From b386e902888fa932705a96756d903db9a1a4e863 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Thu, 2 Aug 2018 16:09:09 +0200
Subject: xmove: add license

see issue #43716
---
 pkgs/applications/misc/xmove/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/xmove/default.nix b/pkgs/applications/misc/xmove/default.nix
index 32729d57475f..e461a2c8816a 100644
--- a/pkgs/applications/misc/xmove/default.nix
+++ b/pkgs/applications/misc/xmove/default.nix
@@ -14,5 +14,6 @@ stdenv.mkDerivation {
 
   meta = {
     platforms = stdenv.lib.platforms.linux;
+    license = stdenv.lib.licenses.mit;
   };
 }
-- 
cgit 1.4.1


From b876df06733c8f850a5aadd125e80725687b06d9 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Sat, 4 Aug 2018 16:28:21 +0200
Subject: twmn: add license

see issue #43176
---
 pkgs/applications/misc/twmn/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/twmn/default.nix b/pkgs/applications/misc/twmn/default.nix
index 020aa963541e..0667ec49b328 100644
--- a/pkgs/applications/misc/twmn/default.nix
+++ b/pkgs/applications/misc/twmn/default.nix
@@ -30,5 +30,6 @@ stdenv.mkDerivation rec {
     homepage = https://github.com/sboli/twmn;
     platforms = with stdenv.lib.platforms; linux;
     maintainers = [ stdenv.lib.maintainers.matejc ];
+    license = stdenv.lib.licenses.lgpl3;
   };
 }
-- 
cgit 1.4.1


From 9c9f5aaeb220937784899ba4b168b9c39f338627 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Sat, 4 Aug 2018 16:47:10 +0200
Subject: tasknc: add license

see issue #43716
---
 pkgs/applications/misc/tasknc/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/tasknc/default.nix b/pkgs/applications/misc/tasknc/default.nix
index e44690a5bd79..bf0e964d591f 100644
--- a/pkgs/applications/misc/tasknc/default.nix
+++ b/pkgs/applications/misc/tasknc/default.nix
@@ -38,5 +38,6 @@ stdenv.mkDerivation rec {
     description = "A ncurses wrapper around taskwarrior";
     maintainers = with maintainers; [ infinisil ];
     platforms = platforms.linux; # Cannot test others
+    license = licenses.mit;
   };
 }
-- 
cgit 1.4.1


From 1857fe6c149c3ca5d57985b2915e85a967c73425 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Sat, 4 Aug 2018 19:09:20 +0200
Subject: rxvt_unicode: add license

see issue #43716
---
 pkgs/applications/misc/rxvt_unicode/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/rxvt_unicode/default.nix b/pkgs/applications/misc/rxvt_unicode/default.nix
index 4ee9f461760c..0e59ef5512d8 100644
--- a/pkgs/applications/misc/rxvt_unicode/default.nix
+++ b/pkgs/applications/misc/rxvt_unicode/default.nix
@@ -67,5 +67,6 @@ stdenv.mkDerivation (rec {
     downloadPage = "http://dist.schmorp.de/rxvt-unicode/Attic/";
     maintainers = [ ];
     platforms = platforms.unix;
+    license = licenses.gpl3;
   };
 })
-- 
cgit 1.4.1


From 4d432df0a54e57e612efdcec468cd6078a133413 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Sun, 5 Aug 2018 16:11:26 +0200
Subject: cointop: add license

see issue #43716
---
 pkgs/applications/misc/cointop/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/cointop/default.nix b/pkgs/applications/misc/cointop/default.nix
index 2ac335759ce4..23d76afff0ce 100644
--- a/pkgs/applications/misc/cointop/default.nix
+++ b/pkgs/applications/misc/cointop/default.nix
@@ -26,5 +26,6 @@ buildGoPackage rec {
     homepage  = https://cointop.sh;
     platforms = stdenv.lib.platforms.linux; # cannot test others
     maintainers = [ ];
+    license = stdenv.lib.licenses.asl20;
   };
 }
-- 
cgit 1.4.1


From 2348623b95d54f87172b46c487694e721287f529 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Sun, 5 Aug 2018 16:39:08 +0200
Subject: fetchmail: add license

see issue #43716
---
 pkgs/applications/misc/fetchmail/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/fetchmail/default.nix b/pkgs/applications/misc/fetchmail/default.nix
index 5cd8f572ad48..8304cb0f8d1c 100644
--- a/pkgs/applications/misc/fetchmail/default.nix
+++ b/pkgs/applications/misc/fetchmail/default.nix
@@ -29,5 +29,6 @@ stdenv.mkDerivation {
 
     platforms = stdenv.lib.platforms.unix;
     maintainers = [ stdenv.lib.maintainers.peti ];
+    license = stdenv.lib.licenses.gpl2Plus;
   };
 }
-- 
cgit 1.4.1


From 9b16e0e5942460212aafc9ae8960cfba6c80f63a Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Mon, 6 Aug 2018 12:07:14 +0200
Subject: pdfmod: add license

see issue #43716
---
 pkgs/applications/misc/pdfmod/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/pdfmod/default.nix b/pkgs/applications/misc/pdfmod/default.nix
index 2c0d642863ed..45d83b5872fa 100644
--- a/pkgs/applications/misc/pdfmod/default.nix
+++ b/pkgs/applications/misc/pdfmod/default.nix
@@ -44,5 +44,6 @@ stdenv.mkDerivation rec {
     description = "A simple application for modifying PDF documents";
     platforms = platforms.all;
     maintainers = with maintainers; [ obadz ];
+    license = licenses.gpl2Plus;
   };
 }
-- 
cgit 1.4.1


From 2a7f6d6960740b2d12d58c69ebe892e0db85847f Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Mon, 6 Aug 2018 12:09:23 +0200
Subject: pdfshuffler: add license

see issue #43716
---
 pkgs/applications/misc/pdfshuffler/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/pdfshuffler/default.nix b/pkgs/applications/misc/pdfshuffler/default.nix
index e06f4407534b..025ad9cd30a1 100644
--- a/pkgs/applications/misc/pdfshuffler/default.nix
+++ b/pkgs/applications/misc/pdfshuffler/default.nix
@@ -36,5 +36,6 @@ python3Packages.buildPythonApplication rec {
     description = "Merge or split pdf documents and rotate, crop and rearrange their pages";
     platforms = platforms.linux;
     maintainers = with maintainers; [ mic92 ];
+    license = licenses.gpl3;
   };
 }
-- 
cgit 1.4.1


From 94b42449ebf4b00eb3a3f6fef3cad9bcc79db542 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Thu, 9 Aug 2018 12:48:52 +0200
Subject: osmctools: add license

see issue #43716
---
 pkgs/applications/misc/osmctools/default.nix | 1 +
 1 file changed, 1 insertion(+)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/osmctools/default.nix b/pkgs/applications/misc/osmctools/default.nix
index e70be8201b34..bb53782fb7d2 100644
--- a/pkgs/applications/misc/osmctools/default.nix
+++ b/pkgs/applications/misc/osmctools/default.nix
@@ -42,5 +42,6 @@ stdenv.mkDerivation rec {
       https://wiki.openstreetmap.org/wiki/Osmfilter
     ];
     platforms = platforms.unix;
+    license = licenses.agpl3;
   };
 }
-- 
cgit 1.4.1


From 807f582d639ac92f3ecf909b0c3767a1bf9ca78b Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Thu, 9 Aug 2018 00:22:59 +0200
Subject: mysql-workbench: 6.3.8 → 8.0.12
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/applications/misc/mysql-workbench/default.nix | 159 ++++++++----------
 .../misc/mysql-workbench/fix-gdal-includes.patch   |  47 ++++++
 .../misc/mysql-workbench/hardcode-paths.patch      | 187 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix                    |   2 +-
 4 files changed, 303 insertions(+), 92 deletions(-)
 create mode 100644 pkgs/applications/misc/mysql-workbench/fix-gdal-includes.patch
 create mode 100644 pkgs/applications/misc/mysql-workbench/hardcode-paths.patch

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/mysql-workbench/default.nix b/pkgs/applications/misc/mysql-workbench/default.nix
index 76517f874642..7068d8aedd37 100644
--- a/pkgs/applications/misc/mysql-workbench/default.nix
+++ b/pkgs/applications/misc/mysql-workbench/default.nix
@@ -1,118 +1,95 @@
-{ stdenv, fetchurl, makeWrapper, cmake, pkgconfig
-, glibc, gnome-keyring, gtk, gtkmm, pcre, swig, sudo
-, mysql, libxml2, libctemplate, libmysqlconnectorcpp
-, vsqlite, tinyxml, gdal, libiodbc, libpthreadstubs
-, libXdmcp, libuuid, libzip, libgnome-keyring, file
-, pythonPackages, jre, autoconf, automake, libtool
-, boost, glibmm, libsigcxx, pangomm, libX11, openssl
-, proj, cairo, libglade
+{ stdenv, fetchurl, substituteAll, cmake, ninja, pkgconfig
+, glibc, gtk3, gtkmm3, pcre, swig, antlr4_7, sudo
+, mysql, libxml2, libmysqlconnectorcpp
+, vsqlite, gdal, libiodbc, libpthreadstubs
+, libXdmcp, libuuid, libzip, libsecret, libssh
+, python2, jre
+, boost, libsigcxx, libX11, openssl
+, proj, cairo, libxkbcommon, epoxy, wrapGAppsHook
+, at-spi2-core, dbus, bash, coreutils
 }:
 
 let
-  inherit (pythonPackages) pexpect pycrypto python paramiko;
+  inherit (python2.pkgs) paramiko pycairo pyodbc;
 in stdenv.mkDerivation rec {
   pname = "mysql-workbench";
-  version = "6.3.8";
+  version = "8.0.12";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "http://dev.mysql.com/get/Downloads/MySQLGUITools/mysql-workbench-community-${version}-src.tar.gz";
-    sha256 = "1bxd828nrawmym6d8awh1vrni8dsbwh1k5am1lrq5ihp5c3kw9ka";
+    sha256 = "0d6k1kw0bi3q5dlilzlgds1gcrlf7pis4asm3d6pssh2jmn5hh82";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ cmake gnome-keyring gtk gtk.dev gtkmm pcre swig python sudo
-    paramiko mysql libxml2 libctemplate libmysqlconnectorcpp vsqlite tinyxml gdal libiodbc file
-    libpthreadstubs libXdmcp libuuid libzip libgnome-keyring libgnome-keyring.dev jre autoconf
-    automake libtool boost glibmm glibmm.dev libsigcxx pangomm libX11 pexpect pycrypto openssl
-    proj cairo cairo.dev makeWrapper libglade ] ;
-
-  prePatch = ''
-    for f in backend/wbpublic/{grt/spatial_handler.h,grtui/geom_draw_box.h,objimpl/db.query/db_query_Resultset.cpp} ;
-    do
-      sed -i 's@#include <gdal/@#include <@' $f ;
-    done
+  patches = [
+    ./fix-gdal-includes.patch
+    (substituteAll {
+      src = ./hardcode-paths.patch;
+      catchsegv = "${glibc.bin}/bin/catchsegv";
+      bash = "${bash}/bin/bash";
+      cp = "${coreutils}/bin/cp";
+      dd = "${coreutils}/bin/dd";
+      ls = "${coreutils}/bin/ls";
+      mkdir = "${coreutils}/bin/mkdir";
+      nohup = "${coreutils}/bin/nohup";
+      rm = "${coreutils}/bin/rm";
+      rmdir = "${coreutils}/bin/rmdir";
+      sudo = "${sudo}/bin/sudo";
+    })
+  ];
 
-    sed -i '32s@mysqlparser@mysqlparser sqlparser@' library/mysql.parser/CMakeLists.txt
+  nativeBuildInputs = [
+    cmake ninja pkgconfig jre swig wrapGAppsHook
+  ];
 
-    cat <<EOF > ext/antlr-runtime/fix-configure
-    #!${stdenv.shell}
-    echo "fixing bundled antlr3c configure" ;
-    sed -i 's@/usr/bin/file@${file}/bin/file@' configure
-    sed -i '12121d' configure
-    EOF
-    chmod +x ext/antlr-runtime/fix-configure
-    sed -i '236s@&&@& ''${PROJECT_SOURCE_DIR}/ext/antlr-runtime/fix-configure &@' CMakeLists.txt
+  buildInputs = [
+    gtk3 gtkmm3 libX11 antlr4_7.runtime.cpp python2 mysql libxml2
+    libmysqlconnectorcpp vsqlite gdal boost libssh openssl
+    libiodbc pcre cairo libuuid libzip libsecret
+    libsigcxx proj
+    # python dependencies:
+    paramiko pycairo pyodbc # sqlanydb
+    # transitive dependencies:
+    libpthreadstubs libXdmcp libxkbcommon epoxy at-spi2-core dbus
+  ];
 
-    substituteInPlace $(pwd)/frontend/linux/workbench/mysql-workbench.in --replace "catchsegv" "${glibc.bin}/bin/catchsegv"
-    substituteInPlace $(pwd)/frontend/linux/workbench/mysql-workbench.in --replace "/usr/lib/x86_64-linux-gnu" "${proj}/lib"
-    patchShebangs $(pwd)/library/mysql.parser/grammar/build-parser
-    patchShebangs $(pwd)/tools/get_wb_version.sh
+  postPatch = ''
+    patchShebangs tools/get_wb_version.sh
   '';
 
   NIX_CFLAGS_COMPILE = [
-    "-I${libsigcxx}/lib/sigc++-2.0/include"
-    "-I${pangomm}/lib/pangomm-1.4/include"
-    "-I${glibmm}/lib/giomm-2.4/include"
+    # error: 'OGRErr OGRSpatialReference::importFromWkt(char**)' is deprecated
+    "-Wno-error=deprecated-declarations"
   ];
 
   cmakeFlags = [
-    "-DCMAKE_CXX_FLAGS=-std=c++11"
     "-DMySQL_CONFIG_PATH=${mysql}/bin/mysql_config"
-    "-DCTemplate_INCLUDE_DIR=${libctemplate}/include"
-    "-DCAIRO_INCLUDE_DIRS=${cairo.dev}/include"
-    "-DGTK2_GDKCONFIG_INCLUDE_DIR=${gtk}/lib/gtk-2.0/include"
-    "-DGTK2_GLIBCONFIG_INCLUDE_DIR=${gtk.dev}/include"
-    "-DGTK2_GTKMMCONFIG_INCLUDE_DIR=${gtkmm}/lib/gtkmm-2.4/include"
-    "-DGTK2_GDKMMCONFIG_INCLUDE_DIR=${gtkmm}/lib/gdkmm-2.4/include"
-    "-DGTK2_GLIBMMCONFIG_INCLUDE_DIR=${glibmm}/lib/glibmm-2.4/include"
+    "-DIODBC_CONFIG_PATH=${libiodbc}/bin/iodbc-config"
+    "-DWITH_ANTLR_JAR=${antlr4_7.jarLocation}"
   ];
 
-  postInstall = ''
-    patchShebangs $out/share/mysql-workbench/extras/build_freetds.sh
-
-    for i in $out/lib/mysql-workbench/modules/wb_utils_grt.py \
-             $out/lib/mysql-workbench/modules/wb_server_management.py \
-             $out/lib/mysql-workbench/modules/wb_admin_grt.py; do
-      substituteInPlace $i \
-        --replace "/bin/bash" ${stdenv.shell} \
-        --replace "/usr/bin/sudo" ${sudo}/bin/sudo
-    done
+  # There is already an executable and a wrapper in bindir
+  # No need to wrap both
+  dontWrapGApps = true;
 
-    wrapProgram "$out/bin/mysql-workbench" \
-      --prefix LD_LIBRARY_PATH : "${python}/lib" \
-      --prefix LD_LIBRARY_PATH : "$(cat ${stdenv.cc}/nix-support/orig-cc)/lib64" \
-      --prefix PATH : "${gnome-keyring}/bin" \
-      --prefix PATH : "${python}/bin" \
-      --set PYTHONPATH $PYTHONPATH \
-      --run '
-# The gnome-keyring-daemon must be running.  To allow for environments like
-# kde, xfce where this is not so, we start it first.
-# It is cleaned up using a supervisor subshell which detects that
-# the parent has finished via the closed pipe as terminate signal idiom,
-# used because we cannot clean up after ourselves due to the exec call.
-
-# Start gnome-keyring-daemon, export the environment variables it asks us to set.
-for expr in $( gnome-keyring-daemon --start ) ; do eval "export "$expr ; done
-
-# Prepare fifo pipe.
-FIFOCTL="/tmp/gnome-keyring-daemon-ctl.$$.fifo"
-[ -p $FIFOCTL ] && rm $FIFOCTL
-mkfifo $FIFOCTL
-
-# Supervisor subshell waits reading from pipe, will receive EOF when parent
-# closes pipe on termination.  Negate read with ! operator to avoid subshell
-# quitting when read EOF returns 1 due to -e option being set.
-(
-    exec 19< $FIFOCTL
-    ! read -u 19
-
-    kill $GNOME_KEYRING_PID
-    rm $FIFOCTL
-) &
+  preFixup = ''
+    gappsWrapperArgs+=(
+      --prefix PATH : "${python2}/bin"
+      --prefix PROJSO : "${proj}/lib/libproj.so"
+      --set PYTHONPATH $PYTHONPATH
+    )
+  '';
 
-exec 19> $FIFOCTL
-            '
+  # Let’s wrap the programs not ending with bin
+  # until https://bugs.mysql.com/bug.php?id=91948 is fixed
+  postFixup = ''
+    find -L "$out/bin" -type f -executable -print0 \
+      | while IFS= read -r -d ''' file; do
+      if [[ "''${file}" != *-bin ]]; then
+        echo "Wrapping program ''${file}"
+        wrapProgram "''${file}" "''${gappsWrapperArgs[@]}"
+      fi
+    done
   '';
 
   meta = with stdenv.lib; {
@@ -127,6 +104,6 @@ exec 19> $FIFOCTL
     homepage = http://wb.mysql.com/;
     license = licenses.gpl2;
     maintainers = [ maintainers.kkallio ];
-    platforms = [ "x86_64-linux" ];
+    platforms = platforms.linux;
   };
 }
diff --git a/pkgs/applications/misc/mysql-workbench/fix-gdal-includes.patch b/pkgs/applications/misc/mysql-workbench/fix-gdal-includes.patch
new file mode 100644
index 000000000000..0a5c31fd40a2
--- /dev/null
+++ b/pkgs/applications/misc/mysql-workbench/fix-gdal-includes.patch
@@ -0,0 +1,47 @@
+--- a/backend/wbpublic/grt/spatial_handler.h
++++ b/backend/wbpublic/grt/spatial_handler.h
+@@ -24,12 +24,12 @@
+ #ifndef SPATIAL_HANDLER_H_
+ #define SPATIAL_HANDLER_H_
+ 
+-#include <gdal/ogrsf_frmts.h>
+-#include <gdal/ogr_api.h>
+-#include <gdal/gdal_pam.h>
+-#include <gdal/memdataset.h>
+-#include <gdal/gdal_alg.h>
+-#include <gdal/gdal.h>
++#include <ogrsf_frmts.h>
++#include <ogr_api.h>
++#include <gdal_pam.h>
++#include <memdataset.h>
++#include <gdal_alg.h>
++#include <gdal.h>
+ #include <deque>
+ #include "base/geometry.h"
+ #include "wbpublic_public_interface.h"
+--- a/backend/wbpublic/grtui/geom_draw_box.h
++++ b/backend/wbpublic/grtui/geom_draw_box.h
+@@ -25,7 +25,7 @@
+ #define _GEOM_DRAW_BOX_H_
+ 
+ #include <mforms/drawbox.h>
+-#include <gdal/ogr_geometry.h>
++#include <ogr_geometry.h>
+ #include "wbpublic_public_interface.h"
+ 
+ class WBPUBLICBACKEND_PUBLIC_FUNC GeomDrawBox : public mforms::DrawBox {
+--- a/backend/wbpublic/objimpl/db.query/db_query_Resultset.cpp
++++ b/backend/wbpublic/objimpl/db.query/db_query_Resultset.cpp
+@@ -21,9 +21,9 @@
+  * 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA 
+  */
+ 
+-#include <gdal/ogrsf_frmts.h>
+-#include <gdal/ogr_api.h>
+-#include <gdal/gdal.h>
++#include <ogrsf_frmts.h>
++#include <ogr_api.h>
++#include <gdal.h>
+ 
+ #include <grts/structs.db.query.h>
+ #include <grtpp_util.h>
diff --git a/pkgs/applications/misc/mysql-workbench/hardcode-paths.patch b/pkgs/applications/misc/mysql-workbench/hardcode-paths.patch
new file mode 100644
index 000000000000..dddf992e4c12
--- /dev/null
+++ b/pkgs/applications/misc/mysql-workbench/hardcode-paths.patch
@@ -0,0 +1,187 @@
+--- a/frontend/linux/workbench/mysql-workbench.in
++++ b/frontend/linux/workbench/mysql-workbench.in
+@@ -99,8 +99,8 @@
+ if test "$WB_DEBUG" != ""; then
+   $WB_DEBUG $MWB_BINARIES_DIR/mysql-workbench-bin "$@"
+ else
+-  if type -p catchsegv > /dev/null; then
+-  catchsegv $MWB_BINARIES_DIR/mysql-workbench-bin "$@"
++  if type -p @catchsegv@ > /dev/null; then
++  @catchsegv@ $MWB_BINARIES_DIR/mysql-workbench-bin "$@"
+   else
+   $MWB_BINARIES_DIR/mysql-workbench-bin "$@"
+   fi
+--- a/plugins/migration/frontend/migration_bulk_copy_data.py
++++ b/plugins/migration/frontend/migration_bulk_copy_data.py
+@@ -110,7 +110,7 @@
+         return 'sh'
+ 
+     def generate_import_script(self, connection_args, path_to_file, schema_name):
+-        output = ['#!/bin/bash']
++        output = ['#!/usr/bin/env bash']
+         output.append('MYPATH=\`pwd\`')
+         
+         output.append('if [ -f \$MYPATH/%s ] ; then' % self.error_log_name)
+@@ -164,7 +164,7 @@
+         return 'sh'
+ 
+     def generate_import_script(self, connection_args, path_to_file, schema_name):
+-        output = ['#!/bin/bash']
++        output = ['#!/usr/bin/env bash']
+         output.append('MYPATH=\`pwd\`')
+         
+         output.append('if [ -f \$MYPATH/%s ] ; then' % self.error_log_name)
+@@ -417,7 +417,7 @@
+     
+         with open(script_path, 'w+') as f:
+             os.chmod(script_path, 0700)
+-            f.write('#!/bin/bash\n\n')
++            f.write('#!/usr/bin/env bash\n\n')
+             f.write('MYPATH=`pwd`\n')
+             
+             f.write("arg_source_password=\"<put source password here>\"\n")
+@@ -521,7 +521,7 @@
+     
+         with open(script_path, 'w+') as f:
+             os.chmod(script_path, 0700)
+-            f.write('#!/bin/bash\n\n')
++            f.write('#!/usr/bin/env bash\n\n')
+             f.write('MYPATH=`pwd`\n')
+             
+             f.write("arg_source_password=\"<put source password here>\"\n")
+--- a/plugins/wb.admin/backend/wb_server_control.py
++++ b/plugins/wb.admin/backend/wb_server_control.py
+@@ -39,7 +39,7 @@
+ 
+ UnixVariant = {
+     "" : {
+-        'sudo_command' : "/usr/bin/sudo -k -S -p EnterPasswordHere ",
++        'sudo_command' : "@sudo@ -k -S -p EnterPasswordHere ",
+     }
+ }
+ 
+--- a/plugins/wb.admin/backend/wb_server_management.py
++++ b/plugins/wb.admin/backend/wb_server_management.py
+@@ -40,7 +40,7 @@
+ 
+ def reset_sudo_prefix():
+     global default_sudo_prefix
+-    default_sudo_prefix       = '/usr/bin/sudo -k -S -p EnterPasswordHere'
++    default_sudo_prefix       = '@sudo@ -k -S -p EnterPasswordHere'
+ 
+ reset_sudo_prefix()
+ 
+@@ -100,7 +100,7 @@
+ 
+     if to_spawn:
+         command += ' &'
+-        sudo_prefix += ' /usr/bin/nohup'
++        sudo_prefix += ' @nohup@'
+       
+     # If as_user is the CURRENT then there's no need to sudo
+     if as_user != Users.CURRENT:
+@@ -111,7 +111,7 @@
+         if '/bin/sh' in sudo_prefix or '/bin/bash' in sudo_prefix:
+             command = "LANG=C " + sudo_prefix + " \"" + command.replace('\\', '\\\\').replace('"', r'\"').replace('$','\\$') + "\""
+         else:
+-            command = "LANG=C " + sudo_prefix + " /bin/bash -c \"" + command.replace('\\', '\\\\').replace('"', r'\"').replace('$','\\$') + "\""
++            command = "LANG=C " + sudo_prefix + " @bash@ -c \"" + command.replace('\\', '\\\\').replace('"', r'\"').replace('$','\\$') + "\""
+ 
+     return command
+ 
+@@ -896,9 +896,9 @@
+             if as_user == Users.CURRENT:
+                 raise PermissionDeniedError("Cannot set owner of directory %s" % path)        
+             else:
+-                command = "/bin/mkdir %s && chown %s %s" % (quote_path(path), with_owner, quote_path(path))
++                command = "@mkdir@ %s && chown %s %s" % (quote_path(path), with_owner, quote_path(path))
+         else:
+-            command = "/bin/mkdir %s" % (quote_path(path))
++            command = "@mkdir@ %s" % (quote_path(path))
+             
+         res = self.process_ops.exec_cmd(command,
+                                         as_user   = as_user,
+@@ -927,7 +927,7 @@
+     @useAbsPath("path")
+     def remove_directory(self, path, as_user = Users.CURRENT, user_password = None):
+         output = StringIO.StringIO()
+-        res = self.process_ops.exec_cmd('/bin/rmdir ' + quote_path(path),
++        res = self.process_ops.exec_cmd('@rmdir@ ' + quote_path(path),
+                                         as_user   = as_user,
+                                         user_password = user_password,
+                                         output_handler = output.write,
+@@ -940,7 +940,7 @@
+     @useAbsPath("path")
+     def remove_directory_recursive(self, path, as_user = Users.CURRENT, user_password = None):
+         output = StringIO.StringIO()
+-        res = self.process_ops.exec_cmd('/bin/rm -R ' + quote_path(path),
++        res = self.process_ops.exec_cmd('@rm@ -R ' + quote_path(path),
+                                         as_user   = as_user,
+                                         user_password = user_password,
+                                         output_handler = output.write,
+@@ -953,7 +953,7 @@
+     @useAbsPath("path")
+     def delete_file(self, path, as_user = Users.CURRENT, user_password = None):
+         output = StringIO.StringIO()
+-        res = self.process_ops.exec_cmd("/bin/rm " + quote_path(path),
++        res = self.process_ops.exec_cmd("@rm@ " + quote_path(path),
+                                         as_user   = as_user,
+                                         user_password = user_password,
+                                         output_handler = output.write,
+@@ -1001,7 +1001,7 @@
+     def _copy_file(self, source, dest, as_user = Users.CURRENT, user_password = None):
+         output = StringIO.StringIO()
+         
+-        res = self.process_ops.exec_cmd("LC_ALL=C /bin/cp " + quote_path(source) + " " + quote_path(dest),
++        res = self.process_ops.exec_cmd("LC_ALL=C @cp@ " + quote_path(source) + " " + quote_path(dest),
+                       as_user   = as_user,
+                       user_password = user_password,
+                       output_handler = output.write,
+@@ -1077,9 +1077,9 @@
+             # for ls -l, the output format changes depending on stdout being a terminal or not
+             # since both cases are possible, we need to handle both at the same time (1st line being total <nnnn> or not)
+             # the good news is that if the line is there, then it will always start with total, regardless of the locale
+-            command = 'LC_ALL=C /bin/ls -l -p %s' % quote_path(path)
++            command = 'LC_ALL=C @ls@ -l -p %s' % quote_path(path)
+         else:
+-            command = 'LC_ALL=C /bin/ls -1 -p %s' % quote_path(path)
++            command = 'LC_ALL=C @ls@ -1 -p %s' % quote_path(path)
+             
+         output = StringIO.StringIO()
+         res = self.process_ops.exec_cmd(command,
+@@ -2160,9 +2160,9 @@
+     def get_range(self, start, end):
+         f = StringIO.StringIO()
+         if not self._need_sudo:
+-            ret = self.server_helper.execute_command("/bin/dd if=%s ibs=1 skip=%i count=%i 2> /dev/null" % (quote_path(self.path), start, end-start), as_user = Users.CURRENT, user_password=None, output_handler=f.write)
++            ret = self.server_helper.execute_command("@dd@ if=%s ibs=1 skip=%i count=%i 2> /dev/null" % (quote_path(self.path), start, end-start), as_user = Users.CURRENT, user_password=None, output_handler=f.write)
+         else:
+-            ret = self.server_helper.execute_command("/bin/dd if=%s ibs=1 skip=%i count=%i 2> /dev/null" % (quote_path(self.path), start, end-start), as_user = Users.ADMIN, user_password=self.get_password, output_handler=f.write)
++            ret = self.server_helper.execute_command("@dd@ if=%s ibs=1 skip=%i count=%i 2> /dev/null" % (quote_path(self.path), start, end-start), as_user = Users.ADMIN, user_password=self.get_password, output_handler=f.write)
+ 
+         if ret != 0:
+             raise RuntimeError("Could not get data from file %s" % self.path)
+@@ -2170,9 +2170,9 @@
+ 
+     def read_task(self, offset, file):
+         if not self._need_sudo:
+-            self.server_helper.execute_command("/bin/dd if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.CURRENT, user_password=None, output_handler=file.write)
++            self.server_helper.execute_command("@dd@ if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.CURRENT, user_password=None, output_handler=file.write)
+         else:
+-            self.server_helper.execute_command("/bin/dd if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.ADMIN, user_password=self.get_password, output_handler=file.write)
++            self.server_helper.execute_command("@dd@ if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.ADMIN, user_password=self.get_password, output_handler=file.write)
+         # this will signal the reader end that there's no more data
+         file.close()
+ 
+@@ -2198,9 +2198,9 @@
+         self._pos = offset
+         f = StringIO.StringIO()
+         if not self._need_sudo:
+-            self.server_helper.execute_command("/bin/dd if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.CURRENT, user_password=None, output_handler=f.write)
++            self.server_helper.execute_command("@dd@ if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.CURRENT, user_password=None, output_handler=f.write)
+         else:
+-            self.server_helper.execute_command("/bin/dd if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.ADMIN, user_password=self._password, output_handler=f.write)
++            self.server_helper.execute_command("@dd@ if=%s ibs=1 skip=%i 2> /dev/null" % (quote_path(self.path), offset), as_user = Users.ADMIN, user_password=self._password, output_handler=f.write)
+         self.data = f
+         self.data.seek(0)
+         if self.skip_first_newline:
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 97219c8a9228..6eb83ceb1ae0 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21501,7 +21501,7 @@ with pkgs;
 
   mnemonicode = callPackage ../misc/mnemonicode { };
 
-  mysql-workbench = newScope gnome2 ../applications/misc/mysql-workbench (let mysql = mysql57; in {
+  mysql-workbench = callPackage ../applications/misc/mysql-workbench (let mysql = mysql57; in {
     gdal = gdal.override {mysql = mysql // {lib = {dev = mysql;};};};
     mysql = mysql;
     pcre = pcre-cpp;
-- 
cgit 1.4.1


From d3977e154147d27861cafc2add425d30fb92d33d Mon Sep 17 00:00:00 2001
From: Florian Klink <flokli@flokli.de>
Date: Thu, 9 Aug 2018 20:03:16 +0200
Subject: masterpdfeditor: 4.3.89 -> 5.1.00 (#44821)

This bumps masterpdfeditor's version to their 5 series.
The download for masterpdfeditor 4 is gone from their servers :-/
---
 pkgs/applications/misc/masterpdfeditor/default.nix | 24 +++++++++++-----------
 1 file changed, 12 insertions(+), 12 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/masterpdfeditor/default.nix b/pkgs/applications/misc/masterpdfeditor/default.nix
index 943f36a57acd..ac6cf2b91c69 100644
--- a/pkgs/applications/misc/masterpdfeditor/default.nix
+++ b/pkgs/applications/misc/masterpdfeditor/default.nix
@@ -1,16 +1,16 @@
-{ stdenv, fetchurl, sane-backends, qtbase, qtsvg, autoPatchelfHook }:
+{ stdenv, fetchurl, sane-backends, qtbase, qtsvg, nss, autoPatchelfHook }:
 let
-  version = "4.3.89";
+  version = "5.1.00";
 in stdenv.mkDerivation {
   name = "masterpdfeditor-${version}";
   src = fetchurl {
     url = "https://code-industry.net/public/master-pdf-editor-${version}_qt5.amd64.tar.gz";
-    sha256 = "0k5bzlhqglskiiq86nmy18mnh5bf2w3mr9cq3pibrwn5pisxnxxc";
+    sha256 = "1s2zhx9xr1ny5s8hmlb99v3z1v26vmx87iixk8cdgndz046p9bg9";
   };
 
   nativeBuildInputs = [ autoPatchelfHook ];
 
-  buildInputs = [ sane-backends qtbase qtsvg ];
+  buildInputs = [ nss qtbase qtsvg sane-backends stdenv.cc.cc ];
 
   dontStrip = true;
 
@@ -18,15 +18,15 @@ in stdenv.mkDerivation {
    p=$out/opt/masterpdfeditor
    mkdir -p $out/bin $p $out/share/applications $out/share/pixmaps
 
-   substituteInPlace masterpdfeditor4.desktop \
-     --replace 'Exec=/opt/master-pdf-editor-4' "Exec=$out/bin" \
-     --replace 'Path=/opt/master-pdf-editor-4' "Path=$out/bin" \
-     --replace 'Icon=/opt/master-pdf-editor-4' "Icon=$out/share/pixmaps"
-   cp -v masterpdfeditor4.png $out/share/pixmaps/
-   cp -v masterpdfeditor4.desktop $out/share/applications
+   substituteInPlace masterpdfeditor5.desktop \
+     --replace 'Exec=/opt/master-pdf-editor-5' "Exec=$out/bin" \
+     --replace 'Path=/opt/master-pdf-editor-5' "Path=$out/bin" \
+     --replace 'Icon=/opt/master-pdf-editor-5' "Icon=$out/share/pixmaps"
+   cp -v masterpdfeditor5.png $out/share/pixmaps/
+   cp -v masterpdfeditor5.desktop $out/share/applications
 
-   cp -v masterpdfeditor4 $p/
-   ln -s $p/masterpdfeditor4 $out/bin/masterpdfeditor4
+   cp -v masterpdfeditor5 $p/
+   ln -s $p/masterpdfeditor5 $out/bin/masterpdfeditor5
    cp -v -r stamps templates lang fonts $p
 
    install -D license.txt $out/share/$name/LICENSE
-- 
cgit 1.4.1


From f1f8a0c2dcd91d4f4a647a3509bd1d4c32379cc9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 9 Aug 2018 11:39:35 -0700
Subject: mdp: 1.0.12 -> 1.0.13 (#44747)

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/mdp/versions.
---
 pkgs/applications/misc/mdp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/mdp/default.nix b/pkgs/applications/misc/mdp/default.nix
index fd0a8ea1fe4e..5af524a456ba 100644
--- a/pkgs/applications/misc/mdp/default.nix
+++ b/pkgs/applications/misc/mdp/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, ncurses }:
 
 stdenv.mkDerivation rec {
-  version = "1.0.12";
+  version = "1.0.13";
   name = "mdp-${version}";
 
   src = fetchFromGitHub {
     owner = "visit1985";
     repo = "mdp";
     rev = version;
-    sha256 = "04izj9i9rxmgswjh2iawqs6qglfv44zfv042smmcvfh1pm43361i";
+    sha256 = "0snmglsmgfavgv6cnlb0j54sr0paf570ajpwk1b3g81v078hz2aq";
   };
 
   makeFlags = [ "PREFIX=$(out)" ];
-- 
cgit 1.4.1


From 87215c4ad9bd947bd21db6841e9c6fc3770c4ded Mon Sep 17 00:00:00 2001
From: Leon Isenberg <ljli@users.noreply.github.com>
Date: Thu, 9 Aug 2018 21:15:44 +0200
Subject: keepass-keeagent: 0.8.1 -> 0.10.1

---
 pkgs/applications/misc/keepass-plugins/keeagent/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/keepass-plugins/keeagent/default.nix b/pkgs/applications/misc/keepass-plugins/keeagent/default.nix
index cd83d2a44e1d..80bf5deceb16 100644
--- a/pkgs/applications/misc/keepass-plugins/keeagent/default.nix
+++ b/pkgs/applications/misc/keepass-plugins/keeagent/default.nix
@@ -1,19 +1,19 @@
 { stdenv, buildEnv, fetchzip, mono }:
 
 let
-  version = "0.8.1";
+  version = "0.10.1";
   drv = stdenv.mkDerivation {
     name = "keeagent-${version}";
 
     src = fetchzip {
-      url = http://lechnology.com/wp-content/uploads/2016/07/KeeAgent_v0.8.1.zip;
-      sha256 = "16x1qrnzg0xkvi7w29wj3z0ldmql2vcbwxksbsmnidzmygwg98hk";
+      url = "https://lechnology.com/wp-content/uploads/2018/04/KeeAgent_v0.10.1.zip";
+      sha256 = "0j7az6l9wcr8z66mfplkxwydd4bgz2p2vd69xncf0nxlfb0lshh7";
       stripRoot = false;
     };
 
     meta = {
       description = "KeePass plugin to allow other programs to access SSH keys stored in a KeePass database for authentication";
-      homepage    = http://lechnology.com/software/keeagent;
+      homepage    = "http://lechnology.com/software/keeagent";
       platforms   = with stdenv.lib.platforms; linux;
       license     = stdenv.lib.licenses.gpl2;
       maintainers = [ ];
-- 
cgit 1.4.1


From 100297e7157e4a4fe81d40b80fa71b2cf1934bd3 Mon Sep 17 00:00:00 2001
From: Yannik Sander <ysndr@users.noreply.github.com>
Date: Thu, 9 Aug 2018 21:25:44 +0200
Subject: update: latte-dock 0.7.5 -> 0.8.0 (#44644)

---
 pkgs/applications/misc/latte-dock/default.nix | 29 +++++++++++++++------------
 1 file changed, 16 insertions(+), 13 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/latte-dock/default.nix b/pkgs/applications/misc/latte-dock/default.nix
index eafe0b9b5c64..c22c014bf5f5 100644
--- a/pkgs/applications/misc/latte-dock/default.nix
+++ b/pkgs/applications/misc/latte-dock/default.nix
@@ -1,28 +1,31 @@
-{ mkDerivation, lib, cmake, xorg, plasma-framework, fetchFromGitHub
-, extra-cmake-modules, karchive, kwindowsystem, qtx11extras, kcrash }:
+{ mkDerivation, lib, cmake, xorg, plasma-framework, fetchurl
+, extra-cmake-modules, karchive, kwindowsystem, qtx11extras, kcrash, knewstuff }:
 
-let version = "0.7.5"; in
+mkDerivation rec {
+  pname = "latte-dock";
+  version = "0.8.0";
+  name = "${pname}-${version}";
 
-mkDerivation {
-  name = "latte-dock-${version}";
-
-  src = fetchFromGitHub {
-    owner = "psifidotos";
-    repo = "Latte-Dock";
-    rev = "v${version}";
-    sha256 = "0fblbx6qk4miag1mhiyns7idsw03p9pj3xc3xxxnb5rpj1fy0ifv";
+  src = fetchurl {
+    url = "https://download.kde.org/stable/${pname}/${name}.tar.xz";
+    sha256 = "1zg9r162r66vcvj5rzgy61mda89sk5yfy96g5p1aahbim0rgbdbs";
+    name = "${name}.tar.xz";
   };
 
   buildInputs = [ plasma-framework xorg.libpthreadstubs xorg.libXdmcp xorg.libSM ];
 
   nativeBuildInputs = [ extra-cmake-modules cmake karchive kwindowsystem
-    qtx11extras kcrash ];
+    qtx11extras kcrash knewstuff ];
+
+
 
   meta = with lib; {
     description = "Dock-style app launcher based on Plasma frameworks";
     homepage = https://github.com/psifidotos/Latte-Dock;
     license = licenses.gpl2;
     platforms = platforms.unix;
-    maintainers = [ maintainers.benley ];
+    maintainers = [ maintainers.benley maintainers.ysndr ];
   };
+
+
 }
-- 
cgit 1.4.1


From fad7857438483b9b350b2a43bdb9738327f3a584 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Thu, 9 Aug 2018 17:13:39 -0400
Subject: img2pdf init at 0.3.1 (#44833)

* img2pdf: init at 0.3.1

* img2pdf: take buildPythonApplication and fetchPypi from python3Packages
---
 pkgs/applications/misc/img2pdf/default.nix | 27 +++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/applications/misc/img2pdf/default.nix

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/img2pdf/default.nix b/pkgs/applications/misc/img2pdf/default.nix
new file mode 100644
index 000000000000..9b6ac086efdf
--- /dev/null
+++ b/pkgs/applications/misc/img2pdf/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, python3Packages }:
+
+with python3Packages;
+
+buildPythonApplication rec {
+  pname = "img2pdf";
+  version = "0.3.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "071s3gf28nb8ifxkix7dzjny6vib7791mnp0v3f4zagcjcic22a4";
+  };
+
+  doCheck = false; # needs pdfrw
+
+  propagatedBuildInputs = [
+    pillow
+  ];
+
+  meta = with stdenv.lib; {
+    description = "Convert images to PDF via direct JPEG inclusion";
+    homepage = https://gitlab.mister-muffin.de/josch/img2pdf;
+    license = licenses.lgpl2;
+    platforms = platforms.unix;
+    maintainers = [ maintainers.veprbl ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index fca205f120d8..9b6a720e2ac1 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16856,6 +16856,8 @@ with pkgs;
 
   inherit (nodePackages) imapnotify;
 
+  img2pdf = callPackage ../applications/misc/img2pdf { };
+
   # Impressive, formerly known as "KeyJNote".
   impressive = callPackage ../applications/office/impressive { };
 
-- 
cgit 1.4.1


From 6044c12bea9c1e80d5aec85fe0bbed9a7ed335b3 Mon Sep 17 00:00:00 2001
From: Ingolf Wagner <contact@ingolf-wagner.de>
Date: Fri, 10 Aug 2018 09:02:53 +0200
Subject: memo : 0.5 -> 0.6 (#44853)

---
 pkgs/applications/misc/memo/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/memo/default.nix b/pkgs/applications/misc/memo/default.nix
index 072ea7e42dc5..c112cf0c928f 100644
--- a/pkgs/applications/misc/memo/default.nix
+++ b/pkgs/applications/misc/memo/default.nix
@@ -1,4 +1,5 @@
 { fetchFromGitHub, silver-searcher, tree, man, stdenv,
+  git,
   pandocSupport ? true, pandoc ? null
   , ... }:
 
@@ -8,13 +9,13 @@ stdenv.mkDerivation rec {
 
   name = "memo-${version}";
 
-  version = "0.5";
+  version = "0.6";
 
   src = fetchFromGitHub {
     owner  = "mrVanDalo";
     repo   = "memo";
     rev    = "${version}";
-    sha256 = "1kq8hmq4lgvkk717nhmdryr90g61xm0jm7y8dzya8jsxsn531gm8";
+    sha256 = "1cvjs36f6vxzfz5d63yhyw8j7gdw5hn6cfzccf7ag08lamjhfhbr";
   };
 
   installPhase = let
@@ -28,6 +29,7 @@ stdenv.mkDerivation rec {
       --replace "ack_cmd=ack"       "ack_cmd=${silver-searcher}/bin/ag" \
       --replace "tree_cmd=tree"     "tree_cmd=${tree}/bin/tree" \
       --replace "man_cmd=man"       "man_cmd=${man}/bin/man" \
+      --replace "git_cmd=git"       "git_cmd=${git}/bin/git" \
       --replace "pandoc_cmd=pandoc" "${pandocReplacement}"
     mv memo $out/bin/
     mv doc/memo.1 $out/share/man/man1/memo.1
-- 
cgit 1.4.1


From 64134b3a2ca1fff4564ed2901805f72d08d1a8ad Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Fri, 10 Aug 2018 09:15:12 +0200
Subject: polybar: 3.2.0 -> 3.2.1

---
 pkgs/applications/misc/polybar/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/polybar/default.nix b/pkgs/applications/misc/polybar/default.nix
index 347b77c7ab4a..5c116f163035 100644
--- a/pkgs/applications/misc/polybar/default.nix
+++ b/pkgs/applications/misc/polybar/default.nix
@@ -23,11 +23,11 @@ assert i3GapsSupport -> ! i3Support     && jsoncpp != null && i3-gaps != null;
 
 stdenv.mkDerivation rec {
     name = "polybar-${version}";
-    version = "3.2.0";
+    version = "3.2.1";
     src = fetchgit {
       url = "https://github.com/jaagr/polybar";
       rev = version;
-      sha256 = "0p94brndysvmmbidhl4ds4w3qvddb752s4vryp0qckb0hz3knqk8";
+      sha256 = "1z45swj2l0h8x8li7prl963cgl6zm3birsswpij8qwcmjaj5l8vz";
     };
 
     meta = with stdenv.lib; {
-- 
cgit 1.4.1


From a023ec647ffb9a31d1a7eb0c496a2f7487168c91 Mon Sep 17 00:00:00 2001
From: Johannes Frankenau <johannes@frankenau.net>
Date: Fri, 10 Aug 2018 09:15:22 +0200
Subject: polybar: add and enable libnl support

---
 pkgs/applications/misc/polybar/default.nix | 17 +++++++++++------
 1 file changed, 11 insertions(+), 6 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/polybar/default.nix b/pkgs/applications/misc/polybar/default.nix
index 5c116f163035..0c358e4221a1 100644
--- a/pkgs/applications/misc/polybar/default.nix
+++ b/pkgs/applications/misc/polybar/default.nix
@@ -1,23 +1,26 @@
 { cairo, cmake, fetchgit, libXdmcp, libpthreadstubs, libxcb, pcre, pkgconfig
-, python2 , stdenv, xcbproto, xcbutil, xcbutilimage, xcbutilrenderutil
-, xcbutilwm, xcbutilxrm, makeWrapper
+, python2, stdenv, xcbproto, xcbutil, xcbutilcursor, xcbutilimage
+, xcbutilrenderutil, xcbutilwm, xcbutilxrm, makeWrapper
 
 # optional packages-- override the variables ending in 'Support' to enable or
 # disable modules
 , alsaSupport   ? true,  alsaLib       ? null
-, iwSupport     ? true,  wirelesstools ? null
 , githubSupport ? false, curl          ? null
 , mpdSupport    ? false, mpd_clientlib ? null
 , pulseSupport  ? false, libpulseaudio ? null
+, iwSupport     ? false, wirelesstools ? null
+, nlSupport     ? true,  libnl         ? null
 , i3Support ? false, i3GapsSupport ? false, i3 ? null, i3-gaps ? null, jsoncpp ? null
 }:
 
 assert alsaSupport   -> alsaLib       != null;
 assert githubSupport -> curl          != null;
-assert iwSupport     -> wirelesstools != null;
 assert mpdSupport    -> mpd_clientlib != null;
 assert pulseSupport  -> libpulseaudio != null;
 
+assert iwSupport     -> ! nlSupport && wirelesstools != null;
+assert nlSupport     -> ! iwSupport && libnl         != null;
+
 assert i3Support     -> ! i3GapsSupport && jsoncpp != null && i3      != null;
 assert i3GapsSupport -> ! i3Support     && jsoncpp != null && i3-gaps != null;
 
@@ -44,14 +47,16 @@ stdenv.mkDerivation rec {
 
     buildInputs = [
       cairo libXdmcp libpthreadstubs libxcb pcre python2 xcbproto xcbutil
-      xcbutilimage xcbutilrenderutil xcbutilwm xcbutilxrm
+      xcbutilcursor xcbutilimage xcbutilrenderutil xcbutilwm xcbutilxrm
 
       (if alsaSupport   then alsaLib       else null)
       (if githubSupport then curl          else null)
-      (if iwSupport     then wirelesstools else null)
       (if mpdSupport    then mpd_clientlib else null)
       (if pulseSupport  then libpulseaudio else null)
 
+      (if iwSupport     then wirelesstools else null)
+      (if nlSupport     then libnl         else null)
+
       (if i3Support || i3GapsSupport then jsoncpp else null)
       (if i3Support then i3 else null)
       (if i3GapsSupport then i3-gaps else null)
-- 
cgit 1.4.1


From d39d2fa09f408369472ecfd95edafc30608ee3eb Mon Sep 17 00:00:00 2001
From: Vladyslav Mykhailichenko <dywedir@pm.me>
Date: Fri, 10 Aug 2018 15:08:27 +0300
Subject: gutenberg: 0.4.0 -> 0.4.1

---
 pkgs/applications/misc/gutenberg/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/gutenberg/default.nix b/pkgs/applications/misc/gutenberg/default.nix
index 186475e2cd59..c5982f68201d 100644
--- a/pkgs/applications/misc/gutenberg/default.nix
+++ b/pkgs/applications/misc/gutenberg/default.nix
@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   name = "gutenberg-${version}";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchFromGitHub {
     owner = "Keats";
     repo = "gutenberg";
     rev = "v${version}";
-    sha256 = "1i2jcyq6afswxyjifhl5irv84licsad7c83yiy17454mplvrmyg2";
+    sha256 = "0is7156aim2ad8xg2f5068crc4gfvm89x8gxa25vc25p0yr1bpla";
   };
 
-  cargoSha256 = "0hzxwvb5m8mvpfxys4ikkaag6khflh5bfglmay11wf6ayighv834";
+  cargoSha256 = "146vlr85n9d06am5ki76fh1vb5r8a4lzx5b7dmgi292kc3dsn41z";
 
   nativeBuildInputs = [ cmake pkgconfig openssl ];
   buildInputs = stdenv.lib.optionals stdenv.isDarwin [ CoreServices cf-private ];
-- 
cgit 1.4.1


From 498be8d390806b8e05a23e47db0d9757793ff270 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 11 Aug 2018 00:57:14 -0700
Subject: urh: 2.2.2 -> 2.2.3 (#44669)

---
 pkgs/applications/misc/urh/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/urh/default.nix b/pkgs/applications/misc/urh/default.nix
index 7bf9aca029b9..56da0cf22efe 100644
--- a/pkgs/applications/misc/urh/default.nix
+++ b/pkgs/applications/misc/urh/default.nix
@@ -2,13 +2,13 @@
 
 python3Packages.buildPythonApplication rec {
   name = "urh-${version}";
-  version = "2.2.2";
+  version = "2.2.3";
 
   src = fetchFromGitHub {
     owner = "jopohl";
     repo = "urh";
     rev = "v${version}";
-    sha256 = "0ncvfl5iyngw3lr2g7awpskrrld6y0x7w0xyp827lcr7x73fvqgp";
+    sha256 = "1iq84590cjpf2rlxb60fy4hxi7vir27bbb10axbwrqwnp5cc4bql";
   };
 
   buildInputs = [ hackrf rtl-sdr ];
-- 
cgit 1.4.1


From bd4ef2def38983d92699fb5e1ff719f83736bb80 Mon Sep 17 00:00:00 2001
From: Pascal Wittmann <mail@pascal-wittmann.de>
Date: Sat, 11 Aug 2018 10:00:34 +0200
Subject: calibre: 3.28.0 -> 3.29.0

---
 pkgs/applications/misc/calibre/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix
index 0a98f387ff86..15d894b0413d 100644
--- a/pkgs/applications/misc/calibre/default.nix
+++ b/pkgs/applications/misc/calibre/default.nix
@@ -5,12 +5,12 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "3.28.0";
+  version = "3.29.0";
   name = "calibre-${version}";
 
   src = fetchurl {
     url = "https://download.calibre-ebook.com/${version}/${name}.tar.xz";
-    sha256 = "0b3vv03c6m6972sk8zj3zc5sq6b9837irnfgjlqhv9z5i75m0414";
+    sha256 = "1r29vi8j51r0nnzpjbg34ryvizzkn31sq1iz7z748wjfgr87wmyh";
   };
 
   patches = [
-- 
cgit 1.4.1


From b26fcaa5c0debe40b4af5100391d8c09dcd25d6c Mon Sep 17 00:00:00 2001
From: Bas van Dijk <v.dijk.bas@gmail.com>
Date: Sat, 11 Aug 2018 15:49:32 +0200
Subject: pgmanage: 10.3.0 -> 10.3.1

---
 pkgs/applications/misc/pgmanage/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'pkgs/applications/misc')

diff --git a/pkgs/applications/misc/pgmanage/default.nix b/pkgs/applications/misc/pgmanage/default.nix
index a548c149665a..a17f34378a8b 100644
--- a/pkgs/applications/misc/pgmanage/default.nix
+++ b/pkgs/applications/misc/pgmanage/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "pgmanage-${version}";
-  version = "10.3.0";
+  version = "10.3.1";
 
   src = fetchFromGitHub {
     owner  = "pgManage";
     repo   = "pgManage";
     rev    = "v${version}";
-    sha256 = "105gmwkifq04qmp5kpgybwjyx01528r6m3x1pxbvnfyni8sf74qj";
+    sha256 = "0ym1arla9wfkmr5n6h6dfyd680vlnng5s5j5nyxi2gl2wxqqhxzz";
   };
 
   patchPhase = ''
-- 
cgit 1.4.1