| Commit message (Collapse) | Author | Age | ||
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| * | | Merge pull request #22817 from jbedo/r | Domen Kožar | 2017-02-27 | |
| |\ \ | | | | | | | R: 3.2.4 -> 3.3.2 | |||
| | * | | R: unmark edgeR and limma as broken | Justin Bedo | 2017-02-24 | |
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| | * | | R: 3.2.4 -> 3.3.2 | Justin Bedo | 2017-02-24 | |
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| * / | R: fix bio3d build | Domen Kožar | 2017-02-27 | |
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| * | ~/.nixpkgs -> ~/.config/nixpkgs | Eelco Dolstra | 2017-02-01 | |
| | | | | | | | The former is still respected as a fallback for config.nix for backwards compatibility (but not for overlays because they're a new feature). | |||
| * | RStudio: Optionally allow packages from custom R environment | Chris Hodapp | 2017-01-27 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | https://nixos.org/nixpkgs/manual/#r-packages contains a method for setting up an R environment with a specific set of libraries, and it creates an R wrapper which points R to those libraries. The package RStudio relies on the standard R package, which then cannot access any of the libraries specified in a custom R environment. While one may easily use pkgs.rstudio.override to change rstudio's R dependency to the custom R environment, this accomplishes nothing because while RStudio runs the correct R wrapper it clears out the environment variable R_LIBS_SITE - and so it is still unable to use any of those packages. In order to work around this problem, these changes allow the user to optionally modify rstudio's wrapper to set environment variable R_PROFILE_USER to an R script which sets R's .libPaths(..) to point to the same libraries; that script is generated from R_LIBS_SITE in the R wrapper. By default, this change has no effect. If R is overridden to something else, and if useRPackages is changed from its default of false, then the change described above is made; for instance: { packageOverrides = pkgs: let self = pkgs.pkgs; in rec { rEnv = pkgs.rWrapper.override { packages = with self.rPackages; [ dplyr ggplot2 e1071 rpart reshape ]; }; rstudioEnv = pkgs.rstudio.override { R = rEnv; useRPackages = true; }; }; } | |||
| * | r-modules: fix snpStats package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix VariantAnnotation package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rtracklayer package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix Rsubread package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix gmapR package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix oligo package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix affyio package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix BitSeq package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix bamsignals package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix affyPLM package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix xml2 package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix XBRL package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix WhopGenome package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix tkrplot package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix tiff package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix TAQMNGR package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix spate package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix showtext package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix seqminer package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix seqinr package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix RVowpalWabbit package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rtiff package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rtfbs package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix Rssa package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix RSclient package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rphast package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix Rmpfr package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rmatio package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rJava package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix RJaCGH package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix Rhtslib package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix Rhpc package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rggobi package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix RGtk2 package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix RcppOctave package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix RcppCNPy package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rcdd package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix rbamtools package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix R2SWF package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix sysfonts package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix PopGenome package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix PKI package | mimadrid | 2017-01-06 | |
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| * | r-modules: fix mwaved package | mimadrid | 2017-01-06 | |
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| * | r-module: fix kza package | mimadrid | 2017-01-06 | |
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