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* gildas: 20180801_a -> 20180901_a (#46159)Sebastien Maret2018-09-25
| | | | | | | | | * gildas: 20180801_a -> 20180801_b - Update gildas - Remove a patch that has been applied upstream * gildas: 20180801_b -> 20180901_a
* Merge pull request #45941 from NixOS/staging-nextFrederik Rietdijk2018-09-23
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| * Merge master into staging-nextFrederik Rietdijk2018-09-18
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| * \ Merge branch 'master' into staging-nextUli Baum2018-09-13
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| * \ \ Merge branch 'master' into staging-nextVladimír Čunát2018-09-04
| |\ \ \ | | | | | | | | | | | | | | | Hydra: ?compare=1477053
| * \ \ \ Merge master into stagingFrederik Rietdijk2018-09-02
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| * \ \ \ \ Merge branch 'master' into stagingVladimír Čunát2018-09-01
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | A few trivial conflicts due to *Platforms mass replace.
| * | | | | | gnome-documents, tlaplus: fix glib referencesVladimír Čunát2018-08-30
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| * | | | | | Merge #44910: cmake: 3.11.2 -> 3.12.1Vladimír Čunát2018-08-30
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| | * | | | | | kicad: use default cmakeAndrew Childs2018-08-13
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| * | | | | | | Merge branch 'master' into stagingVladimír Čunát2018-08-30
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* | | | | | | | | platypus: 2017-03-07 -> 2018-07-22Orivej Desh2018-09-21
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* | | | | | | | | samtools: 1.8 -> 1.9Orivej Desh2018-09-21
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* | | | | | | | siesta: init at 4.0.2Chris Ostrouchov2018-09-14
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* | | | | | | | quantum-espresso: init at 6.3Chris Ostrouchov2018-09-14
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* | | | | | | | tamarin-prover: fix ghc 8.4 build (#46597)Maximilian Bosch2018-09-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | See https://hydra.nixos.org/build/81125645 `tamarin-prover' upstream has a patch to fix GHC 8.4 compilation (and uses stack lts-12.1 now), but it's not released yet: https://github.com/tamarin-prover/tamarin-prover/commit/a08f6e400772899b9b0fc16befc50391cd70696b The build is divided in several derivations, therefore the patch had to be splitted and rebased for `lib/term', `lib/theory' and `lib/utils' to ensure that the patch applies properly during the `patchPhase'. Addresses #45960
* | | | | | | | seaview: init at 4.7 (#46595)Markus J. Ankenbrand2018-09-13
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* | | | | | | gromacs: 2018.2 -> 2018.3 (#46275)R. RyanTM2018-09-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from gromacs
* | | | | | | star: 2.6.0c -> 2.6.1a (#46176)R. RyanTM2018-09-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from star
* | | | | | | Merge pull request #45102 from jbedo/hisat2Matthew Bauer2018-09-10
|\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | hisat2: init 2.1.0
| * | | | | | | hisat2: init 2.1.0Justin Bedo2018-08-17
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* | | | | | | | Merge pull request #46211 from r-ryantm/auto-update/picard-toolsMatthew Bauer2018-09-10
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | picard-tools: 2.18.11 -> 2.18.12
| * | | | | | | | picard-tools: 2.18.11 -> 2.18.12R. RyanTM2018-09-06
| | |_|_|_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from picard-tools
* | | | | | | | almonds: update licenseSilvan Mosberger2018-09-09
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* | | | | | | | root: add licenseMarkus Kowalewski2018-09-08
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* | | | | | | | pynac: add licenseMarkus Kowalewski2018-09-08
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* | | | | | | | prooftree: add licenseMarkus Kowalewski2018-09-08
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* | | | | | | | drgeo: add license + homepageMarkus Kowalewski2018-09-08
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* | | | | | | | sage: re-add pkg-config aliasesTimo Kaufmann2018-09-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Those were removed because they were added to openblas itself. There was an error with that however and it will take some time until the fix makes its way through staging. For the time being, reverting this part of 26d5d030fe498b64a307af35ff96ff215ccd967a will fix the sage build. This commit should be reverted once 408eacbc896ecc6d0e25238963ecbd412d78ce3c is in master.
* | | | | | | | sage: fix numpy and scipy integrationTimo Kaufmann2018-09-07
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* | | | | | | | Merge pull request #46268 from r-ryantm/auto-update/jmolTimo Kaufmann2018-09-07
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | jmol: 14.29.17 -> 14.29.19
| * | | | | | | | jmol: 14.29.17 -> 14.29.19R. RyanTM2018-09-06
| |/ / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from jmol
* | | | | | | | lib/trivial: add a few examples of usage of assertMsg/assertOneOfProfpatsch2018-09-06
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* | | | | | | | gildas: add alternative url for the source code (#46145)Sebastien Maret2018-09-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | For each new release, the upstream developers of Gildas move the source code of the previous release to a different directory. Add this directory to the list of url to avoid build failure at each new release.
* | | | | | | | snakemake: add maintainers (#46117)Renato Garcia2018-09-05
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* | | | | | | | Merge pull request #46053 from danieldk/mxnet-fixesxeji2018-09-05
|\ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | pythonPackages.mxnet: fix build
| * | | | | | | | mxnet: fix library dependencies.Daniël de Kok2018-09-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - mxnet now builds the open source MKL DNN library. However, this was not included with the build. - mxnet builds its own OpenMP library, even when OpenMP is provided by the system. This leads to problems, so remove the included OpenMP implementation: https://github.com/apache/incubator-mxnet/pull/12160
* | | | | | | | | gildas: ignore clang warnings for unused command line argumentsSebastien Maret2018-09-05
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | See #46044
* | | | | | | | | gildas: fix makefile ruleSebastien Maret2018-09-04
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* / / / / / / / mxnet: 1.1.0 -> 1.2.1 (#46026)Daniël de Kok2018-09-04
|/ / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Update and fix the build: - Perl is a build-time requirement. - Fix hardcoded /bin/bash invocation.
* | | | | | | Merge pull request #45730 from Helkafen/snakemakeRyan Mulligan2018-09-02
|\ \ \ \ \ \ \ | |_|_|_|_|_|/ |/| | | | | | snakemake: init at 5.2.2
| * | | | | | python.pkgs.snakemake: init at 5.2.2Sebastian Meric de Bellefon2018-09-01
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* | | | | | Merge pull request #45921 from markuskowa/homepagesxeji2018-09-02
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| * | | | | plm: remove dead homepage link, mark as brokenMarkus Kowalewski2018-09-02
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| * | | | | symmetrica: update homepageMarkus Kowalewski2018-09-02
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| * | | | | jags: update homepage + fix licenseMarkus Kowalewski2018-09-02
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| * | | | | jonprl: update homepageMarkus Kowalewski2018-09-02
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* | | | | | Merge branch 'staging-next'Vladimír Čunát2018-09-01
|\ \ \ \ \ \ | |/ / / / / |/| | | | | | | | | | | The failure diff seems good-enough on Hydra now.
| * | | | | Merge branch 'master' into staging-nextRobert Schütz2018-08-31
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| * \ \ \ \ \ Merge master into staging-nextFrederik Rietdijk2018-08-29
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