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* Merge pull request #81783 from r-ryantm/auto-update/gmshMario Rodas2020-03-05
|\ | | | | gmsh: 4.5.2 -> 4.5.4
| * gmsh: 4.5.2 -> 4.5.4R. RyanTM2020-03-05
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* | Merge pull request #81722 from r-ryantm/auto-update/workcraftMario Rodas2020-03-05
|\ \ | | | | | | workcraft: 3.2.5 -> 3.2.6
| * | workcraft: 3.2.5 -> 3.2.6R. RyanTM2020-03-04
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* | | gromacs: 2020 -> 2020.1R. RyanTM2020-03-04
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* | Merge pull request #81706 from r-ryantm/auto-update/picard-toolsMario Rodas2020-03-04
|\ \ | | | | | | picard-tools: 2.21.8 -> 2.22.0
| * | picard-tools: 2.21.8 -> 2.22.0R. RyanTM2020-03-04
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* | Merge pull request #81692 from r-ryantm/auto-update/leanGabriel Ebner2020-03-04
|\ \ | | | | | | lean: 3.6.0 -> 3.6.1
| * | lean: 3.6.0 -> 3.6.1R. RyanTM2020-03-04
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* | python3Packages.monosat: Fix hashAiken Cairncross2020-03-03
| | | | | | | | PR #81562 inadvertently broke these builds
* | Merge pull request #81604 from markuskowa/upd-octopusmarkuskowa2020-03-03
|\ \ | | | | | | octopus: 9.1 -> 9.2
| * | octopus: 9.1 -> 9.2Markus Kowalewski2020-03-03
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* | | Merge pull request #80977 from r-ryantm/auto-update/quantum-espressomarkuskowa2020-03-03
|\ \ \ | |/ / |/| | quantum-espresso: 6.4.1 -> 6.5
| * | quantum-espresso: 6.4.1 -> 6.5R. RyanTM2020-02-24
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* | | python3Packages.monosat: Fix Python 3.8 buildAiken Cairncross2020-03-03
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* | | marvin: 20.4.0 -> 20.6.0Brenton Horne2020-03-02
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* | | Merge pull request #81063 from NixOS/netpbmJan Tojnar2020-03-02
|\ \ \ | | | | | | | | netpbm: 10.82.01 → 10.89.1
| * | | netpbm: split into multiple outputsJan Tojnar2020-03-01
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* / | truvari:1.3.2->1.3.4scalavision2020-03-02
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* | torchPackages, torch-repl: removeMatthieu Coudron2020-02-28
| | | | | | | | | | | | | | | | | | See https://github.com/NixOS/nixpkgs/issues/71888 and https://github.com/NixOS/nixpkgs/issues/56398 To sump up, development has moved on to other technologies than lua: https://github.com/torch/torch7#development-status and the current packages are broken anyway.
* | mcy: init at 2020.02.05Austin Seipp2020-02-27
| | | | | | | | Signed-off-by: Austin Seipp <aseipp@pobox.com>
* | symbiyosys: fix calls to external programsAustin Seipp2020-02-27
| | | | | | | | | | | | | | | | | | | | | | | | | | 48085826f broke symbiyosys when it needed to call `yosys-abc`: when `ABCEXTERNAL` is set in the Makefile, then `yosys-abc` is not built. But in general `sby` was just calling programs out of the ambient environment. Fix that for most programs it can invoke: it now has a direct dependency on boolector, aiger, abc, yosys, etc. This also does some other minor clean up. Signed-off-by: Austin Seipp <aseipp@pobox.com>
* | lean: 3.5.1 -> 3.6.0Mario Rodas2020-02-26
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* | Merge pull request #80640 from smaret/gildas-20200201aDmitry Kalinkin2020-02-25
|\ \ | | | | | | gildas: 20200101_a -> 20200201_a
| * | gildas: 20200101_a -> 20200201_aSébastien Maret2020-02-20
| | | | | | | | | | | | | | | | | | | | | | | | - Upgrade gildas to the latest version - Remove a patch that has been included upstream - Re-enable parallel building (fixed upstream)
* | | gtkwave: 3.3.103 -> 3.3.104R. RyanTM2020-02-24
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* | | Merge pull request #80292 from bcdarwin/mrtrixLinus Heckemann2020-02-24
|\ \ \ | | | | | | | | mrtrix: init at 3.0_RC3_latest
| * | | mrtrix: init at 3.0_RC3_latestBen Darwin2020-02-16
| | | | | | | | | | | | | | | | | | | | | | | | This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff. Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
* | | | Merge pull request #80759 from Thra11/fix-rTimo Kaufmann2020-02-23
|\ \ \ \ | | | | | | | | | | Fix R
| * | | | R: fix build on aarch64 by removing a failing testTom Hall2020-02-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | I believe this test is currently incorrect on aarch64 and expects a warning about loss of precision with much smaller numbers than the platform's long doubles can handle.
| * | | | R: Enable java support on all platformsTom Hall2020-02-19
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* | | | shogun: 6.0.0 -> 6.1.4Edward Tjörnhammar2020-02-21
| |_|/ |/| | | | | | | | | | | | | | | | | Also migrate to opencv3 to address #72739, the PR didn't build for me. Disable testing and ccache since they were broken. Co-authored-by: Robert Scott <code@humanleg.org.uk>
* | | Merge pull request #80576 from bhipple/u/rust-cargo-elanGabriel Ebner2020-02-20
|\ \ \ | | | | | | | | elan: upgrade cargo fetcher and cargoSha256
| * | | elan: upgrade cargo fetcher and cargoSha256Benjamin Hipple2020-02-19
| |/ / | | | | | | | | | Infra upgrade as part of #79975; ran `nixpkgs-review wip` successfully.
* / / geogebra: 5-0-570-0 -> 5-0-573-0Maximilian Bosch2020-02-20
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* | Merge pull request #80122 from r-ryantm/auto-update/kallistoDaniel Schaefer2020-02-15
|\ \ | | | | | | kallisto: 0.46.1 -> 0.46.2
| * | kallisto: 0.46.1 -> 0.46.2R. RyanTM2020-02-15
| |/ | | | | | | Co-authored-by: Daniel Schaefer <git@danielschaefer.me>
* | lean: 3.4.2 -> 3.5.1Junyoung Clare Jang2020-02-15
| | | | | | | | 3.4.2 is not compilable with GCC >= 9.1
* | verilator: 4.026 -> 4.028R. RyanTM2020-02-14
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* | treewide: change fetchCargoTarball default to opt-outBenjamin Hipple2020-02-13
|/ | | | | | | | | | | Changes the default fetcher in the Rust Platform to be the newer `fetchCargoTarball`, and changes every application using the current default to instead opt out. This commit does not change any hashes or cause any rebuilds. Once integrated, we will start deleting the opt-outs and recomputing hashes. See #79975 for details.
* Merge pull request #79778 from jbedo/dellyDmitry Kalinkin2020-02-11
|\ | | | | delly: 0.8.1 -> 0.8.2
| * delly: 0.8.1 -> 0.8.2Justin Bedo2020-02-11
| | | | | | | | Backported patch required for htslib 1.10.2
* | Merge pull request #79534 from r-ryantm/auto-update/lastRyan Mulligan2020-02-10
|\ \ | |/ |/| last: 1045 -> 1047
| * last: 1045 -> 1047R. RyanTM2020-02-08
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* | marvin: 20.3.0 -> 20.4.0Brenton Horne2020-02-10
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* | kicad-unstable: update update.sh && updateEvils2020-02-10
| | | | | | | | | | | | use /tmp instead of XDG_RUNTIME_DIR which is /run/user/1000, which defaults to 10% of RAM and kicad-packages3d needs ~6gb
* | kicad: simplify component namesEvils2020-02-10
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* | minc_tools: enable building conversion toolsBen Darwin2020-02-10
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* | minc_tools: 2017-09-11 -> unstable-2019-12-04Ben Darwin2020-02-10
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* | clp: 1.17.3 -> 1.17.5R. RyanTM2020-02-10
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