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* Merge pull request #34651 from mnacamura/r-darwin-libcxxPeter Simons2018-02-07
|\ | | | | R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin
| * R: add libcxx to default LDFLAGS and CPPFLAGS on DarwinMitsuhiro Nakamura2018-02-06
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* | samtools: 1.6 -> 1.7Renato Alves2018-02-06
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* | sage: fix non-deterministic build failuresTimo Kaufmann2018-02-05
| | | | | | | | | | | | | | The build was failing on some machines because of a `find` command that touched files in different orders on different machines. That confused `make`s timestamp mechanism.
* | symbiyosys: 2018.01.10 -> 2018.02.04Austin Seipp2018-02-04
| | | | | | | | Signed-off-by: Austin Seipp <aseipp@pobox.com>
* | bitscope: create derivations with version infoBjørn Forsman2018-02-03
| | | | | | | | | | So far the store paths produced by the bitscope derivations have been version-less. Fix it.
* | Merge branch 'master' into stagingVladimír Čunát2018-01-30
|\| | | | | | | Hydra: ?compare=1430035
| * muscle: init at 3.8.31Renato Alves2018-01-28
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* | Merge remote-tracking branch 'upstream/master' into stagingTuomas Tynkkynen2018-01-27
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| * Merge pull request #34156 from arcadio/starAlexey Shmalko2018-01-27
| |\ | | | | | | star: init at 2.5.3a
| | * star: init at 2.5.3aArcadio Rubio García2018-01-24
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* | | Merge branch 'master' into stagingVladimír Čunát2018-01-27
|\| | | | | | | | | | | Hydra: ?compare=1429281
| * | sage: 8.0 -> 8.1, fix sandbox buildTimo Kaufmann2018-01-26
| | | | | | | | | | | | | | | | | | The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
| * | Merge pull request #34119 from arcadio/masteradisbladis2018-01-25
| |\ \ | | | | | | | | igv: 2.3.98 -> 2.4.6
| | * | igv: 2.3.98 -> 2.4.6Arcadio Rubio García2018-01-21
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| * | Merge pull request #34199 from arcadio/kallistoSamuel Leathers2018-01-24
| |\ \ | | | | | | | | kallisto: init at 0.43.1
| | * | kallisto: init at 0.43.1Arcadio Rubio García2018-01-24
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* | | Merge remote-tracking branch 'upstream/master' into HEADFrederik Rietdijk2018-01-24
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| * | R: fix dylib install_name on darwinDaiderd Jordan2018-01-24
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| * | Merge pull request #34169 from Infinisil/add/almondsFrederik Rietdijk2018-01-23
| |\ \ | | | | | | | | almonds: init at 2015-12-27
| | * | almonds: init at 2015-12-27Silvan Mosberger2018-01-23
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| * | | Merge pull request #34125 from arcadio/bwaadisbladis2018-01-23
| |\ \ \ | | | | | | | | | | bwa: 0.7.16a -> 0.7.17
| | * | | bwa: 0.7.16a -> 0.7.17Arcadio Rubio García2018-01-22
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| * | | Merge pull request #34139 from arcadio/bedtoolsadisbladis2018-01-23
| |\ \ \ | | |_|/ | |/| | bedtools: 2.26.0 -> 2.27.1
| | * | bedtools: 2.26.0 -> 2.27.1Arcadio Rubio García2018-01-22
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* | / lean: fixup nativeBuildInputs vs buildInputsWill Dietz2018-01-22
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* | Merge pull request #34140 from arcadio/picardadisbladis2018-01-22
|\ \ | | | | | | picard-tools: 2.7.1 -> 2.17.4
| * | picard-tools: 2.7.1 -> 2.17.4Arcadio Rubio García2018-01-22
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* / bowtie2: 2.3.3.1 -> 2.3.4Arcadio Rubio García2018-01-22
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* Merge pull request #33924 from markuskowa/molden-prSarah Brofeldt2018-01-21
|\ | | | | molden: init at 5.7
| * molden: init at 5.7Markus Kowalewski2018-01-15
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* | weka: 3.8.1 -> 3.8.2Miguel Madrid Mencía2018-01-18
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* | maintainers: remove mornfall from packagesYegor Timoshenko2018-01-17
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* dcm2niix: cmake is native, styleAshley Gillman2018-01-15
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* dcm2niix: init at 1.0.20170130Ashley Gillman2018-01-15
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* bitscope: refactored to pass nixpkgs-lintDavid Asabina2018-01-14
| | | | | | | | | | | | The linter (nixpkgs-lint) was not able to find the bitscope packages because `recurseIntoAttrs` was not applied to the suite's set. The name supplied to `buildFHSUserEnv` produces a binary that corresponds to the binary names in the deb packages (e.g.: bitscope-dso, bitscope-chart, bitscope-logic, etc), however; this name does not constitute a valid nixpkgs name. Valid nixpkgs names satisfy the `/(.*)(-[0-9].*)$/` pattern, therefore a valid name is merged into the derivation produced by `buildFHSUserEnv`.
* Merge pull request #33851 from vbgl/why3-0.88.3adisbladis2018-01-15
|\ | | | | why3: 0.88.1 -> 0.88.3
| * why3: 0.88.1 -> 0.88.3Vincent Laporte2018-01-14
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* | Merge pull request #33839 from mimadrid/update/gephi-0.9.2adisbladis2018-01-15
|\ \ | | | | | | gephi: 0.9.1 -> 0.9.2
| * | gephi: 0.9.1 -> 0.9.2Miguel Madrid Mencía2018-01-13
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* / cytoscape: 3.5.1 -> 3.6.0Miguel Madrid Mencía2018-01-13
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* qgroundcontrol: 2.9.4 -> 3.2.7, unbreak buildadisbladis2018-01-13
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* librepcb-unstable: init at 2017-12-29 (#33630)Luz2018-01-11
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* symbiyosys: 2017.12.06 -> 2018.01.10Austin Seipp2018-01-10
| | | | Signed-off-by: Austin Seipp <aseipp@pobox.com>
* giac: fix buildSymphorien Gibol2018-01-10
| | | | | | giac was broken somewhere between 310ad4 and b33b4a, see https://hydra.nixos.org/build/67137469 libgfortran.so.3 was not found
* treewide: homepage+src updates (found by repology, #33263)Samuel Dionne-Riel2018-01-05
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* z3: 4.5.0-2017-11-06 -> 4.6.0Austin Seipp2018-01-03
| | | | Signed-off-by: Austin Seipp <aseipp@pobox.com>
* Merge branch 'master' into stagingVladimír Čunát2017-12-31
|\ | | | | | | | | A few thousand rebuilds from master, again. Hydra: ?compare=1422362
| * cntk: mark as brokenOrivej Desh2017-12-31
| | | | | | | | | | It never succeeded to build. @abbradar did not respond at https://github.com/NixOS/nixpkgs/commit/94dc37d6223ff6e47745afa92d2fb0efcb3df44f
| * tamarin-prover: enable testsAustin Seipp2017-12-30
| | | | | | | | Signed-off-by: Austin Seipp <aseipp@pobox.com>
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