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* paml: 4.9c -> 4.9gRyan Mulligan2018-03-09
| | | | | | | | Semi-automatic update. These checks were done: - built on NixOS - Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.) - found 4.9g in filename of file in /nix/store/70p59yxnlzhbj8ig1ax8lrrsdbcf37zp-paml-4.9g
* shogun: add patch for json-c 0.13Robin Gloster2018-03-05
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* Merge branch 'master'Vladimír Čunát2018-03-05
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| * gpredict: Added hamlib to buildInputs to control radios, and wrapped with ↵Roger Qiu2018-03-04
| | | | | | | | wrapGAppsHook to fix gnome errors
| * sage: Make build more platform independantTimo Kaufmann2018-03-04
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| * tlaplus: init at 1.5.6Austin Seipp2018-03-02
| | | | | | | | Signed-off-by: Austin Seipp <aseipp@pobox.com>
| * root: 6.10.08 -> 6.12.06Ryan Mulligan2018-03-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/pq2 -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --version` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -V` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -v` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --version` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory version` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` and found version 6.12.06 - found 6.12.06 with grep in /nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06 cc "@veprbl"
| * tulip: 4.9.0 -> 5.1.0Ryan Mulligan2018-02-28
| | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config -h` got 0 exit code - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --help` got 0 exit code - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config help` got 0 exit code - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --version` and found version 5.1.0 - found 5.1.0 with grep in /nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0 cc ""
| * picard-tools: 2.17.4 -> 2.17.10Ryan Mulligan2018-02-28
| | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - found 2.17.10 with grep in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10 - found 2.17.10 in filename of file in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10 cc "@jbedo"
| * pari: 2.9.3 -> 2.9.4Ryan Mulligan2018-02-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/tex2mail help` got 0 exit code - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp --help` got 0 exit code - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp help` got 0 exit code - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` got 0 exit code - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` got 0 exit code - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -V` and found version 2.9.4 - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -v` and found version 2.9.4 - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --version` and found version 2.9.4 - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` and found version 2.9.4 - ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` and found version 2.9.4 - found 2.9.4 with grep in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4 - found 2.9.4 in filename of file in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4 cc "@ertes @raskin @AndersonTorres"
| * Merge pull request #36094 from ryantm/auto-update/wxmaxima-17.10.1-to-18.02.0Peter Simons2018-02-28
| |\ | | | | | | wxmaxima: 17.10.1 -> 18.02.0
| | * wxmaxima: 17.10.1 -> 18.02.0Ryan Mulligan2018-02-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - found 18.02.0 with grep in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0 - found 18.02.0 in filename of file in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0 cc "@peti"
| * | verilator: 3.900 -> 3.920Ryan Mulligan2018-02-28
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin -V` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin --version` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg -V` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg --version` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg -V` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg --version` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator -V` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator --version` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage -V` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage --version` and found version 3.920 - ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_profcfunc help` got 0 exit code - found 3.920 with grep in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920 - found 3.920 in filename of file in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920 cc "@thoughtpolice"
| * Merge pull request #35713 from ryantm/auto-update/fricas-1.3.1-to-1.3.2Frederik Rietdijk2018-02-27
| |\ | | | | | | fricas: 1.3.1 -> 1.3.2
| | * fricas: 1.3.1 -> 1.3.2Ryan Mulligan2018-02-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` got 0 exit code - ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` and found version 1.3.2 - ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/efricas --help` got 0 exit code - found 1.3.2 with grep in /nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2 cc "@sprock"
| * | Merge pull request #35720 from ryantm/auto-update/igv-2.4.6-to-2.4.8Frederik Rietdijk2018-02-27
| |\ \ | | | | | | | | igv: 2.4.6 -> 2.4.8
| | * | igv: 2.4.6 -> 2.4.8Ryan Mulligan2018-02-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - found 2.4.8 with grep in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8 - found 2.4.8 in filename of file in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8 cc "@mimadrid"
| * | | lp_solve: 5.5.2.0 -> 5.5.2.5Ryan Mulligan2018-02-26
| |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` got 0 exit code - ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` and found version 5.5.2.5 - found 5.5.2.5 with grep in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5 - found 5.5.2.5 in filename of file in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5 cc "@smironov"
| * | Merge pull request #35555 from ryantm/auto-update/bcftools-1.6-to-1.7adisbladis2018-02-26
| |\ \ | | | | | | | | bcftools: 1.6 -> 1.7
| | * | bcftools: 1.6 -> 1.7Ryan Mulligan2018-02-25
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` got 0 exit code - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` got 0 exit code - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` got 0 exit code - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -v` and found version 1.7 - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --version` and found version 1.7 - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools version` and found version 1.7 - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` and found version 1.7 - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` and found version 1.7 - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` and found version 1.7 - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats -h` got 0 exit code - ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats --help` got 0 exit code - found 1.7 with grep in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7
| * | cryptoverif: 1.22 -> 1.28Ryan Mulligan2018-02-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28/bin/cryptoverif --help` got 0 exit code - found 1.28 with grep in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28 - found 1.28 in filename of file in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
| * | gpredict: 1.3 → 2.2.1Jan Tojnar2018-02-26
| | |
| * | Merge pull request #35566 from ryantm/auto-update/bowtie2-2.3.4-to-2.3.4.1adisbladis2018-02-26
| |\ \ | | | | | | | | bowtie2: 2.3.4 -> 2.3.4.1
| | * | bowtie2: 2.3.4 -> 2.3.4.1Ryan Mulligan2018-02-25
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -V` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -v` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -V` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -v` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` got 0 exit code - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --version` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` and found version 2.3.4.1 - ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` and found version 2.3.4.1 - found 2.3.4.1 with grep in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1 - found 2.3.4.1 in filename of file in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
| * | Merge pull request #35583 from ryantm/auto-update/cbc-2.9.5-to-2.9.9adisbladis2018-02-26
| |\ \ | | | | | | | | cbc: 2.9.5 -> 2.9.9
| | * | cbc: 2.9.5 -> 2.9.9Ryan Mulligan2018-02-25
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` got 0 exit code - ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp version` and found version 2.9.9 - ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` and found version 2.9.9 - ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` got 0 exit code - ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc version` and found version 2.9.9 - ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` and found version 2.9.9 - found 2.9.9 with grep in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9 - found 2.9.9 in filename of file in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
| * | cntk: fix build without CUDANikolay Amiantov2018-02-25
| | |
| * | mxnet: 0.11.0 -> 1.1.0Nikolay Amiantov2018-02-25
| | |
| * | caffe: add nccl supportNikolay Amiantov2018-02-25
| | |
| * | caffe: depend on opencv3Nikolay Amiantov2018-02-25
| | | | | | | | | | | | | | | | | | openblas is used since it's propagated from OpenCV and ATLAS compiled without architecture-specific optimizations is generally slower than OpenBLAS as I heard.
| * | cntk: 2.2 -> 2.4Nikolay Amiantov2018-02-25
| | | | | | | | | | | | | | | Comment for `broken` indicates that it never worked at all, which is strange since on my machine it did. Anyway it works now for me.
| * | treewide: unquote homepage in my packagesNikolay Amiantov2018-02-25
| |/ | | | | | | I don't like this personally but we have #27809 as a precedent.
| * tree-wide: autorename gnome packages to use dashesJan Tojnar2018-02-25
| |
* | treewide: transition mesa to libGLU_combinedAlexander V. Nikolaev2018-02-24
| |
* | treewide: transition from mesa_glu to libGLUAlexander V. Nikolaev2018-02-24
|/
* qalculate-gtk: 2.1.0 -> 2.2.1Gabriel Ebner2018-02-24
|
* sage: explicitly use gfortran6Timo Kaufmann2018-02-23
| | | | | The recent change from gfortran=gfortran6 to gfortran=gfortran7 broke the build.
* bcal: init at 1.7Johannes Frankenau2018-02-21
|
* Merge staging and PR #35021Vladimír Čunát2018-02-16
|\ | | | | | | | | It's the last staging commit (mostly) built on Hydra, and a minimal fix for Darwin regression in pysqlite.
| * Merge remote-tracking branch 'upstream/master' into HEADFrederik Rietdijk2018-02-14
| |\
| * | avy: fixes to work with clang and muslWill Dietz2018-02-13
| | |
| * | cvc4: build in parallelWill Dietz2018-02-13
| | |
| * | cvc4: patch up fpu_control usageWill Dietz2018-02-13
| | |
| * | picosat: fix ar and ranlib usage for crossWill Dietz2018-02-13
| | |
| * | picosat: fixup include for unistd.hWill Dietz2018-02-13
| | |
| * | boolector: patch usage of ar and ranlib for crossWill Dietz2018-02-13
| | | | | | | | | | | | eep.
| * | boolector: fix missing stdint.h includeWill Dietz2018-02-13
| | |
* | | coq: 8.7.1 -> 8.7.2John Wiegley2018-02-15
| | |
* | | eprover: fix build in non-GCC environmentsVincent Laporte2018-02-14
| |/ |/|
* | z3: also needs setuptoolsJörg Thalheim2018-02-14
| |
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