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Commit message (Collapse)AuthorAge
* simgrid: 3.20 -> 3.21Tristan Helmich (omniIT)2018-11-02
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* sasmodels: unstable -> 4.2.0Adam Washington2018-10-17
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* root5: init at 5.34.36Dmitry Kalinkin2018-09-24
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* root: add licenseMarkus Kowalewski2018-09-08
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* snakemake: add maintainers (#46117)Renato Garcia2018-09-05
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* python.pkgs.snakemake: init at 5.2.2Sebastian Meric de Bellefon2018-09-01
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* Merge branch 'master' into staging-nextVladimír Čunát2018-08-17
|\ | | | | | | Hydra: ?compare=1473892
| * Update simgrid 3.19.1 -> 3.20 + parallel tests + enable darwin (#42721)Michael Mercier2018-08-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * simgrid: 3.19.1 -> 3.20 Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/simgrid/versions. These checks were done: - built on NixOS - /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicc passed the binary check. - /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicxx passed the binary check. - /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpirun passed the binary check. - Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/tesh had a zero exit code or showed the expected version - /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid-colorizer passed the binary check. - Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_update_xml had a zero exit code or showed the expected version - /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_convert_TI_traces passed the binary check. - Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpimain had a zero exit code or showed the expected version - /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/graphicator passed the binary check. - 6 of 9 passed binary check by having a zero exit code. - 4 of 9 passed binary check by having the new version present in output. - found 3.20 with grep in /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20 - directory tree listing: https://gist.github.com/edefc2f1a2e81412484edc2e45986e03 - du listing: https://gist.github.com/a44f7d57537e93152a8e6c569f8ed1ae * simgrid: 3.19.1 -> 3.20 + add darwin - Fix dependencies to enable build on darwin - Add ctest flag to enable parallel testing * Use simpler parallel testing logic because it is already done in nixpkgs/pkgs/stdenv/generic/setup.sh
* | treewide: Make configureFlags listsJohn Ericson2018-08-03
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* pkgs/*: remove unreferenced function argumentsvolth2018-07-21
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* [bot]: remove unreferenced codevolth2018-07-20
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* golly: 3.1 -> 3.2R. RyanTM2018-07-13
| | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/golly/versions.
* Merge pull request #42590 from TimPut/openmvsbuildfixMatthew Bauer2018-06-28
|\ | | | | openmvs: build with CGAL 4.12
| * openmvs: fix CGAL 4.12 dependencytim put2018-06-26
| | | | | | | | patch executables with openMVS library path
* | openmvg: 1.1 -> 1.3tim put2018-06-25
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* simgrid: 3.17 -> 3.19.1Ryan Mulligan2018-05-28
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* simgrid: cleanupYegor Timoshenko2018-05-25
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* treewide: add version to packagesMatthew Bauer2018-05-25
| | | | | | | | | Lots of packages are missing versions in their name. This adds them where appropriate. These were found with this command: $ nix-env -qa -f. | grep -v '\-[0-9A-Za-z.-_+]*$' | grep -v '^hook$' See issue #41007.
* sasview: fix build (#40433)Maximilian Bosch2018-05-13
| | | | | | | | | | | | | | | | | | | | The package breaks currently breaks with the following message: ``` fixed-output derivation produced path '/nix/store/5dh1mdj027ad8sprk12fqa5h5bpdxs5n-sasview' with sha256 hash '12k1w4yq1mzjxcp2cqb562c7cbwzhi54rsbmgi0fax0i1660q167' instead of the expected hash '05la54wwzzlkhmj8vkr0bvzagyib6z6mgwqbddzjs5y1wd48vpcx' ``` To fix the build the following changes were applied: * Switched to latest master for now as the older releases have a broken `py.test` configuration and altering hashes. * Added `checkPhase` which invokes `py.test` directly and drops duplicated files from `dist/tmpbuild`. * Rebased the patches `pyparsing-fix.patch` and `local_config.patch` for the latest master revision. Additionally refer to the discussion in #40381 for further reference.
* treewide: stdenv.lib.platforms.gnu -> ... gnu ++ linuxWill Dietz2018-04-30
| | | | Include all linux platforms.
* Merge pull request #39360 from lsix/update_motuLancelot SIX2018-04-25
|\ | | | | motuclient: 1.4.00 -> 1.5.00
| * motuclient: 1.4.00 -> 1.5.00Lancelot SIX2018-04-23
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* | Merge pull request #38740 from r-ryantm/auto-update/cytoscapeMatthew Justin Bauer2018-04-18
|\ \ | |/ |/| cytoscape: 3.6.0 -> 3.6.1
| * cytoscape: 3.6.0 -> 3.6.1R. RyanTM2018-04-11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/cytoscape/versions. These checks were done: - built on NixOS - ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code - ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code - found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1 - directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554
* | openmvg: mark as brokenxeji2018-04-12
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* Merge pull request #36852 from rprospero/sasview-for-prMatthew Justin Bauer2018-04-09
|\ | | | | sasview: init at 4.1.2
| * Remove lint from Sasview packageAdam Washington2018-03-22
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| * Make xhtml2pdf its own package in python-packagesAdam Washington2018-03-21
| | | | | | | | | | xhtml2pdf now uses the main package html5lib with just an override to pull the correct version number.
| * sasview: init at 4.1.2Adam Washington2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | Sasview is a data fitting and analysis package for small angle scattering data. More information can be found at https://www.sasview.org. There is some unfortunate cruft to this commit. SasView uses the xhtml2pdf python package, which has a specific version of html5lib as a dependency. This module manually loads that version into sasview. I haven't made xhtml2pdf available as its own package due to these circumstances.
* | openmvs-unstable: 2017-05-01 -> 2018-05-26Jörg Thalheim2018-04-08
| | | | | | | | fix build
* | gephi: build from sourcesvolth2018-03-19
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* Merge branch 'master'Vladimír Čunát2018-03-05
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| * root: 6.10.08 -> 6.12.06Ryan Mulligan2018-03-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/pq2 -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --version` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` got 0 exit code - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -V` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -v` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --version` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory version` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` and found version 6.12.06 - ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` and found version 6.12.06 - found 6.12.06 with grep in /nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06 cc "@veprbl"
| * tulip: 4.9.0 -> 5.1.0Ryan Mulligan2018-02-28
| | | | | | | | | | | | | | | | | | | | | | | | | | Semi-automatic update. These checks were performed: - built on NixOS - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config -h` got 0 exit code - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --help` got 0 exit code - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config help` got 0 exit code - ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --version` and found version 5.1.0 - found 5.1.0 with grep in /nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0 cc ""
* | treewide: transition mesa to libGLU_combinedAlexander V. Nikolaev2018-02-24
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* Merge pull request #33839 from mimadrid/update/gephi-0.9.2adisbladis2018-01-15
|\ | | | | gephi: 0.9.1 -> 0.9.2
| * gephi: 0.9.1 -> 0.9.2Miguel Madrid Mencía2018-01-13
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* | cytoscape: 3.5.1 -> 3.6.0Miguel Madrid Mencía2018-01-13
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* Fix typoMERCIER Michael2017-11-28
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* Add myself as maintainerMERCIER Michael2017-11-27
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* simgrid: 3.15 -> 3.17 + clean + add optionsMERCIER Michael2017-11-27
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* golly: 2.8 -> 3.1Michael Raskin2017-11-11
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* fix source root locations.Piotr Bogdan2017-11-02
| | | | | | | | | | These have changed following commit https://github.com/NixOS/nixpkgs/commit/c3255fe8ec326d2c8fe9462d49ed83aa64d3e68f. See also: - https://github.com/NixOS/nixpkgs/pull/31004 - https://github.com/NixOS/nixpkgs/pull/31106
* root: 6.10.04 -> 6.10.08Dmitry Kalinkin2017-10-20
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* Merge branch 'master' into stagingOrivej Desh2017-10-02
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * master: (271 commits) pysmbc: clarify license pysmbc: fix license bazel: 0.5.4 -> 0.6.0 (#29990) googler: init at 3.3 go: declare support for aarch64 firefox-beta-bin: 56.0b5 -> 57.0b4 spotify: 1.0.64.401.g9d720389-21 -> 1.0.64.407.g9bd02c2d-26 gogs: 0.11.19 -> 0.11.29 grafana: 4.5.1 -> 4.5.2 mopidy-iris: 3.4.1 -> 3.4.9 nextcloud: 12.0.2 -> 12.0.3 haskell-json-autotype: jailbreak to fix build within LTS 9.x kore: fix up kore: init at 2.0.0 glusterfs service: fix issues with useRpcbind tig: 2.2.2 -> 2.3.0 haskell-hspec-core: enable test suite again hackage-packages.nix: automatic Haskell package set update librsvg: fix thumbnailer path awscli: 1.11.108 -> 1.11.162 ...
| * gplates: mark as brokenFranz Pletz2017-09-30
| | | | | | | | (cherry picked from commit 5b09ca07b8cf3ea87838a5b4af555e2830948ff1)
| * openmodelica: mark as broken, unmaintainedFranz Pletz2017-09-30
| | | | | | | | (cherry picked from commit d9298e3a00edc796b040373a64a6284f60813278)
* | misc pkgs: Basic sed to get fix `pkgconfig` and `autoreconfHook` `buildInputs`John Ericson2017-09-21
|/ | | | Only acts on one-line dependency lists.
* root: add noSplash optionDmitry Kalinkin2017-08-30
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* root: 6.10.02 -> 6.10.04Dmitry Kalinkin2017-08-22
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