diff options
Diffstat (limited to 'pkgs')
-rw-r--r-- | pkgs/applications/science/misc/snakemake/default.nix | 41 | ||||
-rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 43 insertions, 0 deletions
diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix new file mode 100644 index 000000000000..6b0570814f2b --- /dev/null +++ b/pkgs/applications/science/misc/snakemake/default.nix @@ -0,0 +1,41 @@ +{ + stdenv +, python +}: + +python.buildPythonPackage rec { + pname = "snakemake"; + version = "5.2.2"; + + propagatedBuildInputs = with python; [ + appdirs + ConfigArgParse + datrie + docutils + jsonschema + pyyaml + ratelimiter + requests + wrapt + ]; + + src = python.fetchPypi { + inherit pname version; + sha256 = "adffe7e24b4a613a9e8bf0a2a320b3cea236d86afb9132bb0bbbc08b8e35a3a3"; + }; + + doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json + + meta = with stdenv.lib; { + homepage = http://snakemake.bitbucket.io; + license = licenses.mit; + description = "Python-based execution environment for make-like workflows"; + longDescription = '' + Snakemake is a workflow management system that aims to reduce the complexity of + creating workflows by providing a fast and comfortable execution environment, + together with a clean and readable specification language in Python style. Snakemake + workflows are essentially Python scripts extended by declarative code to define + rules. Rules describe how to create output files from input files. + ''; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 975b526bc222..46e8b0e2dd7d 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -8677,6 +8677,8 @@ with pkgs; smc = callPackage ../tools/misc/smc { }; + snakemake = callPackage ../applications/science/misc/snakemake { python = python3Packages; }; + snowman = qt5.callPackage ../development/tools/analysis/snowman { }; sparse = callPackage ../development/tools/analysis/sparse { }; |