5 files changed, 16 insertions, 7 deletions
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a50dc4007136..e2cdc3a51cec 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -27455,8 +27455,6 @@ with pkgs;
 
   yaws = callPackage ../servers/http/yaws { };
 
-  youtrack = callPackage ../servers/jetbrains/youtrack.nix { };
-
   zabbixFor = version: rec {
     agent = (callPackages ../servers/monitoring/zabbix/agent.nix {}).${version};
     proxy-mysql = (callPackages ../servers/monitoring/zabbix/proxy.nix { mysqlSupport = true; }).${version};
@@ -34326,9 +34324,9 @@ with pkgs;
 
   openbrf = libsForQt5.callPackage ../applications/misc/openbrf { };
 
-  opencpn = darwin.apple_sdk_11_0.callPackage ../applications/misc/opencpn {
+  opencpn = callPackage ../applications/misc/opencpn {
     inherit (darwin) DarwinTools;
-    inherit (darwin.apple_sdk_11_0.frameworks) AppKit;
+    inherit (darwin.apple_sdk.frameworks) AppKit;
   };
 
   openfx = callPackage ../development/libraries/openfx { };
diff --git a/pkgs/top-level/coq-packages.nix b/pkgs/top-level/coq-packages.nix
index fed85970d9bb..4a79bee73fdf 100644
--- a/pkgs/top-level/coq-packages.nix
+++ b/pkgs/top-level/coq-packages.nix
@@ -125,6 +125,7 @@ let
       vcfloat = callPackage ../development/coq-modules/vcfloat {};
       Velisarios = callPackage ../development/coq-modules/Velisarios {};
       Verdi = callPackage ../development/coq-modules/Verdi {};
+      vscoq-language-server = callPackage ../development/coq-modules/vscoq-language-server {};
       VST = callPackage ../development/coq-modules/VST ((lib.optionalAttrs
         (lib.versionAtLeast self.coq.version "8.14") {
           compcert = self.compcert.override {
diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix
index 751a13b34ce7..c3ff83d20c83 100644
--- a/pkgs/top-level/php-packages.nix
+++ b/pkgs/top-level/php-packages.nix
@@ -370,7 +370,8 @@ lib.makeScope pkgs.newScope (self: with self; {
           configureFlags = [
             "--enable-dom"
           ];
-          patches = lib.optionals (lib.versionOlder php.version "8.2.14") [
+          # Add a PHP lower version bound constraint to avoid applying the patch on older PHP versions.
+          patches = lib.optionals (lib.versionOlder php.version "8.2.14" && lib.versionAtLeast php.version "8.1") [
             # Fix tests with libxml 2.12
             # Part of 8.3.1RC1+, 8.2.14RC1+
             (fetchpatch {
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index c3253da82ad7..c46adcf249fd 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -8373,6 +8373,8 @@ self: super: with self; {
 
   ninja = callPackage ../development/python-modules/ninja { inherit (pkgs) ninja; };
 
+  nipreps-versions = callPackage ../development/python-modules/nipreps-versions { };
+
   nipy = callPackage ../development/python-modules/nipy { };
 
   nipype = callPackage ../development/python-modules/nipype {
@@ -8385,6 +8387,8 @@ self: super: with self; {
 
   nitransforms = callPackage ../development/python-modules/nitransforms { };
 
+  niworkflows = callPackage ../development/python-modules/niworkflows { };
+
   nix-kernel = callPackage ../development/python-modules/nix-kernel {
     inherit (pkgs) nix;
   };
@@ -14026,6 +14030,8 @@ self: super: with self; {
 
   svgelements = callPackage ../development/python-modules/svgelements { };
 
+  svgutils = callPackage ../development/python-modules/svgutils { };
+
   svgwrite = callPackage ../development/python-modules/svgwrite { };
 
   sv-ttk = callPackage ../development/python-modules/sv-ttk { };
@@ -14126,8 +14132,7 @@ self: super: with self; {
   tblib = callPackage ../development/python-modules/tblib { };
 
   tblite = callPackage ../development/libraries/science/chemistry/tblite/python.nix {
-    tblite = pkgs.tblite;
-    meson = pkgs.meson;
+    inherit (pkgs) tblite meson simple-dftd3;
   };
 
   tbm-utils = callPackage ../development/python-modules/tbm-utils { };
@@ -14166,6 +14171,8 @@ self: super: with self; {
 
   tempita = callPackage ../development/python-modules/tempita { };
 
+  templateflow = callPackage ../development/python-modules/templateflow { };
+
   tempora = callPackage ../development/python-modules/tempora { };
 
   tenacity = callPackage ../development/python-modules/tenacity { };
diff --git a/pkgs/top-level/qt6-packages.nix b/pkgs/top-level/qt6-packages.nix
index 665d2a653eee..571a12ef50d6 100644
--- a/pkgs/top-level/qt6-packages.nix
+++ b/pkgs/top-level/qt6-packages.nix
@@ -88,6 +88,8 @@ makeScopeWithSplicing' {
   # is, to allow users to choose the right build if needed.
   sddm = callPackage ../applications/display-managers/sddm {};
 
+  waylib = callPackage ../development/libraries/waylib { };
+
   } // lib.optionalAttrs pkgs.config.allowAliases {
     # Convert to a throw on 01-01-2023.
     # Warnings show up in various cli tool outputs, throws do not.