diff options
Diffstat (limited to 'pkgs/development/r-modules/default.nix')
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 68 |
1 files changed, 55 insertions, 13 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index b3611d14e4b2..5c0ed284e4ae 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -409,7 +409,6 @@ let Cairo = [ pkgs.pkgconfig ]; Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ]; qtutils = [ pkgs.qt4 ]; - ecoretriever = [ pkgs.which ]; tcltk2 = [ pkgs.tcl pkgs.tk ]; tikzDevice = [ pkgs.which pkgs.texlive.combined.scheme-medium ]; rPython = [ pkgs.which ]; @@ -630,7 +629,6 @@ let "rioja" "ripa" "rite" - "rnbn" "RNCEP" "RQDA" "RSDA" @@ -662,7 +660,6 @@ let "SYNCSA" "SyNet" "tcltk2" - "TDMR" "TED" "TestScorer" "TIMP" @@ -695,24 +692,29 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ "acs" # build is broken - "AffyTiling" # build is broken "agRee" # depends on broken package BRugs-0.8-6 "aLFQ" # depends on broken package bio3d-2.3-1 + "anamiR" # depends on broken package RMySQL-0.10.11 + "AneuFinder" # depends on broken package Rhtslib-1.6.0 "animation" # build is broken "anim_plots" # depends on broken package animation-2.4 "annmap" # depends on broken package RMySQL-0.10.9 "apaStyle" # depends on broken package gdtools-0.1.3 "apaTables" # depends on broken package OpenMx-2.7.4 + "aptg" # depends on broken package brranching-0.2.0 "ArrayExpressHTS" # build is broken "arrayQualityMetrics" # build is broken "auRoc" # depends on broken package OpenMx-2.7.4 + "bamsignals" # depends on broken package Rhtslib-1.6.0 "BatchQC" # build is broken + "bayesCL" # build is broken "bayou" # depends on broken package animation-2.4 "bedr" # build is broken "BETS" # build is broken "BiGGR" # depends on broken package rsbml-2.30.0 "bio3d" # build is broken "bioassayR" # depends on broken package ChemmineR-2.24.2 + "bioCancer" # depends on broken package covr-2.2.2 "biomformat" # depends on broken package r-rhdf5-2.16.0 "biotools" # depends on broken package rpanel-1.1-3 "birte" # build is broken @@ -734,6 +736,8 @@ let "categoryCompare" # depends on broken package RCytoscape-1.21.1 "Causata" # depends on broken package RMySQL-0.10.9 "cdcfluview" # depends on broken package V8-1.2 + "CexoR" # depends on broken package Rhtslib-1.6.0 + "ChAMP" # depends on broken package goseq-1.26.0 "ChemmineDrugs" # depends on broken package ChemmineR-2.24.2 "ChemmineR" # build is broken "chinese_misc" # build is broken @@ -762,13 +766,14 @@ let "csaw" # build is broken "ctsem" # depends on broken package OpenMx-2.7.4 "cudaBayesreg" # build is broken - "curlconverter" # depends on broken package V8-1.2 "cytofkit" # depends on broken package flowCore-1.38.2 + "CytoML" # depends on broken package flowCore-1.40.6 "daff" # depends on broken package V8-1.2 "dagbag" # build is broken "dagitty" # depends on broken package V8-1.2 "dagLogo" # depends on broken package MotIV-1.28.0 "DAISIE" # depends on broken package animation-2.4 + "DataEntry" # build is broken "dataMaid" # build is broken "dataone" # build is broken "datapack" # build is broken @@ -777,7 +782,9 @@ let "DCM" # build is broken "DDD" # depends on broken package animation-2.4 "deBInfer" # depends on broken package PBSddesolve-1.12.2 + "debrowser" # depends on broken package V8-1.4 "DecisionCurve" # build is broken + "DeepBlueR" # build is broken "deepSNV" # build is broken "DEGraph" # depends on broken package RCytoscape-1.21.1 "DEploid" # build is broken @@ -787,7 +794,6 @@ let "DirichletMultinomial" # build is broken "diveRsity" # build is broken "DmelSGI" # depends on broken package r-rhdf5-2.16.0 - "DNAprofiles" # build is broken "docxtools" # build is broken "DOQTL" # depends on broken package r-rhdf5-2.16.0 "DOT" # depends on broken package V8-1.2 @@ -801,11 +807,14 @@ let "euroMix" # build is broken "evobiR" # depends on broken package animation-2.4 "exifr" # build is broken + "ExperimentHubData" # build is broken "exprso" # build is broken "fastR" # build is broken + "fCCAC" # depends on broken package Rhtslib-1.6.0 "fdq" # depends on broken package gdtools-0.1.3 "Fgmutils" # depends on broken package gdtools-0.1.3 "flan" # build is broken + "flextable" # depends on broken package gdtools-0.1.4 "flowAI" # depends on broken package r-flowCore-1.38.2 "flowBeads" # depends on broken package r-flowCore-1.38.2 "flowBin" # depends on broken package r-flowCore-1.38.2 @@ -822,6 +831,7 @@ let "flowMeans" # depends on broken package r-flowCore-1.38.2 "flowMerge" # depends on broken package r-flowCore-1.38.2 "flowPeaks" # build is broken + "flowPloidy" # depends on broken package flowCore-1.40.6 "flowQB" # depends on broken package r-flowCore-1.38.2 "flowQ" # depends on broken package flowCore-1.38.2 "FlowSOM" # depends on broken package r-flowCore-1.38.2 @@ -848,6 +858,8 @@ let "gazepath" # build is broken "gdtools" # build is broken "GENE_E" # depends on broken package r-rhdf5-2.16.0 + "GenoGAM" # build is broken + "genomation" # depends on broken package Rhtslib-1.6.0 "geojson" # depends on broken package r-protolite-1.5 "geojsonio" # depends on broken package V8-1.2 "geojsonlint" # depends on broken package V8-1.2 @@ -855,19 +867,22 @@ let "gfer" # depends on broken package V8-1.2 "ggcyto" # depends on broken package r-flowCore-1.38.2 "ggghost" # depends on broken package animation-2.4 + "ggimage" # depends on broken package gridGraphics-0.1-5 "ggiraph" # depends on broken package gdtools-0.1.3 "ggiraphExtra" # depends on broken package gdtools-0.1.3 "ggseas" # build is broken + "gmapR" # build is broken "gmatrix" # depends on broken package cudatoolkit-8.0.61 "gMCP" # build is broken "gmDatabase" # depends on broken package RMySQL-0.10.9 "gmum_r" # build is broken - "goldi" # build is broken "googleformr" # build is broken + "goseq" # build is broken "gpg" # build is broken "gpuR" # build is broken "gputools" # depends on broken package cudatoolkit-8.0.61 "GraphPAC" # build is broken + "greengenes13_5MgDb" # build is broken "gridGraphics" # build is broken "GSCA" # depends on broken package r-rhdf5-2.16.0 "GUIDE" # depends on broken package rpanel-1.1-3 @@ -877,11 +892,14 @@ let "harrietr" # build is broken "HDF5Array" # depends on broken package r-rhdf5-2.16.0 "healthyFlowData" # depends on broken package r-flowCore-1.38.2 + "hexSticker" # depends on broken package gridGraphics-0.1-5 "HierO" # build is broken "HilbertVisGUI" # build is broken "HiPLARM" # build is broken "hisse" # depends on broken package animation-2.4 + "hoardeR" # depends on broken package Rhtslib-1.6.0 "homomorpheR" # depends on broken package sodium-0.4 + "HTSeqGenie" # depends on broken package gmapR-1.16.0 "HTSSIP" # depends on broken package r-rhdf5-2.16.0 "idm" # depends on broken package animation-2.4 "ifaTools" # depends on broken package OpenMx-2.7.4 @@ -889,7 +907,7 @@ let "IHWpaper" # depends on broken package r-lpsymphony-1.0.2 "IlluminaHumanMethylation450k_db" # build is broken "immunoClust" # depends on broken package r-flowCore-1.38.2 - "inSilicoMerging" # build is broken + "imputeR" # depends on broken package ridge-2.2 "intansv" # build is broken "interactiveDisplay" # build is broken "ionicons" # depends on broken package rsvg-1.0 @@ -902,8 +920,10 @@ let "KoNLP" # build is broken "largeList" # build is broken "largeVis" # build is broken + "lavaan_shiny" # depends on broken package OpenMx-2.7.10 "lawn" # depends on broken package V8-1.2 "LCMCR" # build is broken + "LeArEst" # depends on broken package opencpu-1.6.1 "lefse" # build is broken "lfe" # build is broken "lgcp" # depends on broken package rpanel-1.1-3 @@ -926,6 +946,7 @@ let "MBESS" # depends on broken package OpenMx-2.7.4 "mBvs" # build is broken "mcaGUI" # build is broken + "mcPAFit" # build is broken "mdsr" # depends on broken package RMySQL-0.10.9 "Mediana" # depends on broken package gdtools-0.1.3 "melviewr" # build is broken @@ -936,13 +957,14 @@ let "metagear" # build is broken "MetaIntegrator" # depends on broken package RMySQL-0.10.9 "metaSEM" # depends on broken package OpenMx-2.7.4 + "methylKit" # depends on broken package Rhtslib-1.6.0 "MigClim" # build is broken "minimist" # depends on broken package V8-1.2 "miscF" # depends on broken package BRugs-0.8-6 "mixlink" # build is broken "MLSeq" # build is broken - "MMDiff" # depends on broken package r-DiffBind-2.0.9 "mmnet" # build is broken + "MODIStsp" # build is broken "MonetDBLite" # build is broken "mongolite" # build is broken "monogeneaGM" # depends on broken package animation-2.4 @@ -969,7 +991,9 @@ let "ndjson" # build is broken "ndtv" # depends on broken package animation-2.4 "NetRep" # depends on broken package r-RhpcBLASctl-0.15-148 + "networkBMA" # build is broken "nlts" # build is broken + "normr" # depends on broken package Rhtslib-1.6.0 "NORRRM" # build is broken "odbc" # build is broken "officer" # depends on broken package gdtools-0.1.3 @@ -979,10 +1003,12 @@ let "OpenMx" # build is broken "optbdmaeAT" # build is broken "optBiomarker" # depends on broken package rpanel-1.1-3 + "optrcdmaeAT" # build is broken "ora" # depends on broken package ROracle-1.3-1 "OUwie" # depends on broken package animation-2.4 "PAA" # build is broken "paleotree" # depends on broken package animation-2.4 + "PathoStat" # depends on broken package BatchQC-1.2.1 "PathSelectMP" # build is broken "PatternClass" # build is broken "PBD" # depends on broken package animation-2.4 @@ -999,6 +1025,7 @@ let "PGA" # build is broken "PGPC" # depends on broken package ChemmineR-2.24.2 "ph2bye" # depends on broken package animation-2.4 + "PharmacoGx" # build is broken "PhyInformR" # depends on broken package animation-2.4 "phylocurve" # depends on broken package animation-2.4 "phyloseq" # depends on broken package r-rhdf5-2.16.0 @@ -1008,6 +1035,7 @@ let "PING" # depends on broken package PICS-2.16.0 "plateCore" # depends on broken package r-flowCore-1.38.2 "plfMA" # build is broken + "plink" # build is broken "podkat" # build is broken "PottsUtils" # depends on broken package BRugs-0.8-6 "powell" # build is broken @@ -1043,11 +1071,12 @@ let "RapidPolygonLookup" # depends on broken package PBSmapping-2.69.76 "RAppArmor" # build is broken "raptr" # depends on broken package PBSmapping-2.69.76 - "RBerkeley" # build is broken "RbioRXN" # depends on broken package ChemmineR-2.24.2 "Rblpapi" # build is broken + "RCAS" # depends on broken package Rhtslib-1.6.0 "Rchemcpp" # depends on broken package ChemmineR-2.24.2 "rchess" # depends on broken package V8-1.2 + "RchivalTag" # depends on broken package PBSmapping-2.69.76 "RchyOptimyx" # depends on broken package r-flowCore-1.38.2 "RcmdrPlugin_FuzzyClust" # build is broken "RcmdrPlugin_PcaRobust" # build is broken @@ -1060,6 +1089,7 @@ let "rcqp" # build is broken "rcrypt" # build is broken "RCytoscape" # build is broken + "rdataretriever" # build is broken "rDEA" # build is broken "RDieHarder" # build is broken "REBayes" # depends on broken package Rmosek-1.2.5.1 @@ -1075,8 +1105,10 @@ let "Rgnuplot" # build is broken "rgp" # build is broken "rgpui" # depends on broken package rgp-0.4-1 + "rgsepd" # depends on broken package goseq-1.26.0 "rhdf5" # build is broken "RhpcBLASctl" # build is broken + "Rhtslib" # build is broken "ridge" # build is broken "rjade" # depends on broken package V8-1.2 "rJPSGCS" # build is broken @@ -1089,12 +1121,14 @@ let "rmapshaper" # depends on broken package V8-1.2 "rMAT" # build is broken "Rmosek" # build is broken + "rmumps" # build is broken "RMySQL" # build is broken + "rnaturalearth" # depends on broken package sf-0.4-1 "RnavGraph" # build is broken "rnetcarto" # build is broken + "ROI_plugin_clp" # depends on broken package clpAPI-1.2.7 "ROI_plugin_cplex" # depends on broken package Rcplex-0.3-3 "ROI_plugin_symphony" # depends on broken package Rsymphony-0.1-26 - "Rolexa" # build is broken "ROracle" # build is broken "RPA" # depends on broken package r-rhdf5-2.16.0 "RPANDA" # depends on broken package animation-2.4 @@ -1103,6 +1137,7 @@ let "Rphylopars" # depends on broken package animation-2.4 "Rpoppler" # build is broken "RQuantLib" # build is broken + "Rsampletrees" # build is broken "RSAP" # build is broken "rsbml" # build is broken "RSCABS" # build is broken @@ -1119,9 +1154,9 @@ let "RVideoPoker" # depends on broken package rpanel-1.1-3 "rzmq" # build is broken "s2" # build is broken - "Sabermetrics" # build is broken "sapFinder" # build is broken "sbrl" # build is broken + "SC3" # depends on broken package scater-1.2.0 "scater" # depends on broken package r-rhdf5-2.16.0 "scran" # depends on broken package r-rhdf5-2.16.0 "SDD" # depends on broken package rpanel-1.1-3 @@ -1129,6 +1164,7 @@ let "seasonalview" # build is broken "Sejong" # build is broken "SemiCompRisks" # build is broken + "semPlot" # depends on broken package OpenMx-2.7.10 "semtree" # depends on broken package OpenMx-2.7.4 "seqbias" # build is broken "SeqGrapheR" # build is broken @@ -1141,11 +1177,11 @@ let "SimInf" # build is broken "simsalapar" # build is broken "smapr" # depends on broken package r-rhdf5-2.16.0 + "SMITE" # depends on broken package goseq-1.26.0 "SnakeCharmR" # build is broken "sodium" # build is broken "soilphysics" # depends on broken package rpanel-1.1-3 "sortinghat" # build is broken - "spade" # depends on broken package r-flowCore-1.38.2 "spdynmod" # depends on broken package animation-2.4 "spocc" # depends on broken package V8-1.2 "spongecake" # build is broken @@ -1159,20 +1195,24 @@ let "subspaceMOA" # depends on broken package animation-2.4 "svglite" # depends on broken package gdtools-0.1.3 "sybilSBML" # build is broken + "SymTS" # build is broken "synthACS" # depends on broken package acs-2.0 "tcpl" # depends on broken package RMySQL-0.10.9 "TDA" # build is broken "TED" # depends on broken package animation-2.4 "tesseract" # build is broken + "texPreview" # depends on broken package magick-0.4 "textreadr" # build is broken "textTinyR" # build is broken "TFBSTools" # depends on broken package CNEr-1.8.3 + "tilegramsR" # depends on broken package sf-0.4-1 "TKF" # depends on broken package animation-2.4 "tmap" # depends on broken package V8-1.2 "tmaptools" # depends on broken package V8-1.2 "tofsims" # build is broken "toxboot" # depends on broken package RMySQL-0.10.9 "TransView" # build is broken + "treatSens" # build is broken "treeplyr" # depends on broken package animation-2.4 "TSMySQL" # depends on broken package RMySQL-0.10.9 "uaparserjs" # depends on broken package V8-1.2 @@ -1181,12 +1221,14 @@ let "umx" # depends on broken package OpenMx-2.7.4 "userfriendlyscience" # depends on broken package OpenMx-2.7.4 "V8" # build is broken + "VariantTools" # depends on broken package gmapR-1.16.0 "VBmix" # build is broken "vcfR" # build is broken "vdiffr" # depends on broken package gdtools-0.1.3 "vmsbase" # depends on broken package PBSmapping-2.69.76 "wallace" # depends on broken package V8-1.2 "wand" # build is broken + "WebGestaltR" # depends on broken package PythonInR-0.1-3 "webp" # build is broken "wordbankr" # depends on broken package RMySQL-0.10.9 "x13binary" # build is broken |