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-rw-r--r--pkgs/development/python-modules/accelerate/default.nix27
-rw-r--r--pkgs/development/python-modules/adafruit-nrfutil/default.nix6
-rw-r--r--pkgs/development/python-modules/aenum/default.nix4
-rw-r--r--pkgs/development/python-modules/afdko/default.nix4
-rw-r--r--pkgs/development/python-modules/aioairq/default.nix4
-rw-r--r--pkgs/development/python-modules/aiobotocore/default.nix4
-rw-r--r--pkgs/development/python-modules/aiofiles/default.nix8
-rw-r--r--pkgs/development/python-modules/aiogram/default.nix6
-rw-r--r--pkgs/development/python-modules/aiohttp-socks/default.nix4
-rw-r--r--pkgs/development/python-modules/aiojobs/default.nix4
-rw-r--r--pkgs/development/python-modules/aiosql/default.nix4
-rw-r--r--pkgs/development/python-modules/aioxmpp/default.nix5
-rw-r--r--pkgs/development/python-modules/alembic/default.nix4
-rw-r--r--pkgs/development/python-modules/allure-behave/default.nix4
-rw-r--r--pkgs/development/python-modules/allure-pytest/default.nix4
-rw-r--r--pkgs/development/python-modules/allure-python-commons-test/default.nix4
-rw-r--r--pkgs/development/python-modules/allure-python-commons/default.nix4
-rw-r--r--pkgs/development/python-modules/amazon-ion/default.nix6
-rw-r--r--pkgs/development/python-modules/amazon-kclpy/default.nix4
-rw-r--r--pkgs/development/python-modules/ansible/default.nix4
-rw-r--r--pkgs/development/python-modules/anthropic/default.nix4
-rw-r--r--pkgs/development/python-modules/anyio/default.nix10
-rw-r--r--pkgs/development/python-modules/aocd/default.nix42
-rw-r--r--pkgs/development/python-modules/apache-beam/default.nix4
-rw-r--r--pkgs/development/python-modules/aprslib/default.nix4
-rw-r--r--pkgs/development/python-modules/apsw/default.nix4
-rw-r--r--pkgs/development/python-modules/argon2-cffi-bindings/default.nix6
-rw-r--r--pkgs/development/python-modules/argon2-cffi/default.nix40
-rw-r--r--pkgs/development/python-modules/argos-translate-files/default.nix4
-rw-r--r--pkgs/development/python-modules/argostranslate/default.nix4
-rw-r--r--pkgs/development/python-modules/ariadne/default.nix4
-rw-r--r--pkgs/development/python-modules/array-record/default.nix4
-rw-r--r--pkgs/development/python-modules/arviz/default.nix14
-rw-r--r--pkgs/development/python-modules/asana/default.nix6
-rw-r--r--pkgs/development/python-modules/asf-search/default.nix4
-rw-r--r--pkgs/development/python-modules/asn1tools/default.nix19
-rw-r--r--pkgs/development/python-modules/astroquery/default.nix7
-rw-r--r--pkgs/development/python-modules/asttokens/default.nix4
-rw-r--r--pkgs/development/python-modules/async-timeout/default.nix4
-rw-r--r--pkgs/development/python-modules/atpublic/default.nix8
-rw-r--r--pkgs/development/python-modules/auth0-python/default.nix9
-rw-r--r--pkgs/development/python-modules/autoflake/default.nix4
-rw-r--r--pkgs/development/python-modules/autopep8/default.nix4
-rw-r--r--pkgs/development/python-modules/av/default.nix4
-rw-r--r--pkgs/development/python-modules/awkward-cpp/default.nix4
-rw-r--r--pkgs/development/python-modules/awkward/default.nix11
-rw-r--r--pkgs/development/python-modules/aws-adfs/default.nix4
-rw-r--r--pkgs/development/python-modules/aws-sam-translator/default.nix28
-rw-r--r--pkgs/development/python-modules/aws-xray-sdk/default.nix4
-rw-r--r--pkgs/development/python-modules/awslambdaric/default.nix6
-rw-r--r--pkgs/development/python-modules/awswrangler/default.nix4
-rw-r--r--pkgs/development/python-modules/azure-cosmos/default.nix4
-rw-r--r--pkgs/development/python-modules/azure-mgmt-trafficmanager/default.nix4
-rw-r--r--pkgs/development/python-modules/bash_kernel/default.nix6
-rw-r--r--pkgs/development/python-modules/bbox/default.nix4
-rw-r--r--pkgs/development/python-modules/beartype/default.nix6
-rw-r--r--pkgs/development/python-modules/bitcoinlib/default.nix6
-rw-r--r--pkgs/development/python-modules/bitstring/default.nix11
-rw-r--r--pkgs/development/python-modules/blinker/default.nix25
-rw-r--r--pkgs/development/python-modules/blinkpy/default.nix8
-rw-r--r--pkgs/development/python-modules/blosc2/default.nix4
-rw-r--r--pkgs/development/python-modules/blspy/default.nix7
-rw-r--r--pkgs/development/python-modules/botocore/default.nix4
-rw-r--r--pkgs/development/python-modules/bottle/default.nix4
-rw-r--r--pkgs/development/python-modules/bottombar/default.nix4
-rw-r--r--pkgs/development/python-modules/bqplot/default.nix4
-rw-r--r--pkgs/development/python-modules/bqscales/default.nix8
-rw-r--r--pkgs/development/python-modules/breathe/default.nix12
-rw-r--r--pkgs/development/python-modules/brian2/default.nix4
-rw-r--r--pkgs/development/python-modules/brotli/default.nix6
-rw-r--r--pkgs/development/python-modules/brotlicffi/default.nix6
-rw-r--r--pkgs/development/python-modules/build/default.nix16
-rw-r--r--pkgs/development/python-modules/bytewax/default.nix4
-rw-r--r--pkgs/development/python-modules/castepxbin/default.nix2
-rw-r--r--pkgs/development/python-modules/catppuccin/default.nix4
-rw-r--r--pkgs/development/python-modules/cepa/default.nix16
-rw-r--r--pkgs/development/python-modules/certifi/default.nix4
-rw-r--r--pkgs/development/python-modules/cfn-lint/default.nix4
-rw-r--r--pkgs/development/python-modules/chardet/default.nix4
-rw-r--r--pkgs/development/python-modules/charset-normalizer/default.nix17
-rw-r--r--pkgs/development/python-modules/cheroot/default.nix4
-rw-r--r--pkgs/development/python-modules/chia-rs/default.nix6
-rw-r--r--pkgs/development/python-modules/circuitbreaker/default.nix10
-rw-r--r--pkgs/development/python-modules/cirq-core/default.nix2
-rw-r--r--pkgs/development/python-modules/cleanlab/default.nix6
-rw-r--r--pkgs/development/python-modules/click-odoo-contrib/default.nix4
-rw-r--r--pkgs/development/python-modules/click/default.nix14
-rw-r--r--pkgs/development/python-modules/clickhouse-cli/default.nix5
-rw-r--r--pkgs/development/python-modules/clickhouse-connect/default.nix6
-rw-r--r--pkgs/development/python-modules/cliff/default.nix4
-rw-r--r--pkgs/development/python-modules/cohere/default.nix4
-rw-r--r--pkgs/development/python-modules/colored/default.nix31
-rw-r--r--pkgs/development/python-modules/comm/default.nix4
-rw-r--r--pkgs/development/python-modules/compreffor/default.nix4
-rw-r--r--pkgs/development/python-modules/configparser/default.nix10
-rw-r--r--pkgs/development/python-modules/contourpy/default.nix12
-rw-r--r--pkgs/development/python-modules/correctionlib/default.nix4
-rw-r--r--pkgs/development/python-modules/coverage/default.nix4
-rw-r--r--pkgs/development/python-modules/crate/default.nix9
-rw-r--r--pkgs/development/python-modules/cronsim/default.nix12
-rw-r--r--pkgs/development/python-modules/cryptodatahub/default.nix67
-rw-r--r--pkgs/development/python-modules/cryptolyzer/default.nix4
-rw-r--r--pkgs/development/python-modules/cryptoparser/default.nix22
-rw-r--r--pkgs/development/python-modules/cvxopt/default.nix4
-rw-r--r--pkgs/development/python-modules/cvxpy/default.nix2
-rw-r--r--pkgs/development/python-modules/cx-freeze/default.nix4
-rw-r--r--pkgs/development/python-modules/cython-test-exception-raiser/default.nix38
-rw-r--r--pkgs/development/python-modules/cytoolz/default.nix4
-rw-r--r--pkgs/development/python-modules/dalle-mini/default.nix4
-rw-r--r--pkgs/development/python-modules/dash/default.nix4
-rw-r--r--pkgs/development/python-modules/dask-awkward/default.nix4
-rw-r--r--pkgs/development/python-modules/dask/default.nix7
-rw-r--r--pkgs/development/python-modules/databases/default.nix4
-rw-r--r--pkgs/development/python-modules/databricks-sql-connector/default.nix4
-rw-r--r--pkgs/development/python-modules/dataset/default.nix4
-rw-r--r--pkgs/development/python-modules/datasets/default.nix4
-rw-r--r--pkgs/development/python-modules/datasette/default.nix2
-rw-r--r--pkgs/development/python-modules/datauri/default.nix19
-rw-r--r--pkgs/development/python-modules/dbt-bigquery/default.nix4
-rw-r--r--pkgs/development/python-modules/dbt-core/default.nix4
-rw-r--r--pkgs/development/python-modules/dbt-redshift/default.nix4
-rw-r--r--pkgs/development/python-modules/dbt-snowflake/default.nix4
-rw-r--r--pkgs/development/python-modules/dbus-deviation/default.nix5
-rw-r--r--pkgs/development/python-modules/deal/default.nix4
-rw-r--r--pkgs/development/python-modules/deap/default.nix4
-rw-r--r--pkgs/development/python-modules/debugpy/default.nix13
-rw-r--r--pkgs/development/python-modules/deepdiff/default.nix12
-rw-r--r--pkgs/development/python-modules/defcon/default.nix4
-rw-r--r--pkgs/development/python-modules/deprecated/default.nix6
-rw-r--r--pkgs/development/python-modules/devtools/default.nix4
-rw-r--r--pkgs/development/python-modules/diff-match-patch/default.nix35
-rw-r--r--pkgs/development/python-modules/dill/default.nix8
-rw-r--r--pkgs/development/python-modules/dinghy/default.nix4
-rw-r--r--pkgs/development/python-modules/dirty-equals/default.nix83
-rw-r--r--pkgs/development/python-modules/distlib/default.nix4
-rw-r--r--pkgs/development/python-modules/distrax/default.nix4
-rw-r--r--pkgs/development/python-modules/dj-rest-auth/default.nix4
-rw-r--r--pkgs/development/python-modules/django-allauth/default.nix61
-rw-r--r--pkgs/development/python-modules/django-anymail/default.nix4
-rw-r--r--pkgs/development/python-modules/django-environ/default.nix4
-rw-r--r--pkgs/development/python-modules/django-extensions/default.nix13
-rw-r--r--pkgs/development/python-modules/django-filter/default.nix29
-rw-r--r--pkgs/development/python-modules/django-hijack/default.nix4
-rw-r--r--pkgs/development/python-modules/django-import-export/default.nix4
-rw-r--r--pkgs/development/python-modules/django-mailman3/default.nix12
-rw-r--r--pkgs/development/python-modules/django-pattern-library/default.nix54
-rw-r--r--pkgs/development/python-modules/django-redis/default.nix10
-rw-r--r--pkgs/development/python-modules/django-storages/default.nix81
-rw-r--r--pkgs/development/python-modules/django-stubs/default.nix4
-rw-r--r--pkgs/development/python-modules/django-taggit/default.nix15
-rw-r--r--pkgs/development/python-modules/django/3.nix4
-rw-r--r--pkgs/development/python-modules/django/4.nix4
-rw-r--r--pkgs/development/python-modules/docker/default.nix4
-rw-r--r--pkgs/development/python-modules/docopt-ng/default.nix13
-rw-r--r--pkgs/development/python-modules/docutils/default.nix4
-rw-r--r--pkgs/development/python-modules/dogpile-cache/default.nix34
-rw-r--r--pkgs/development/python-modules/draftjs-exporter/default.nix6
-rw-r--r--pkgs/development/python-modules/duo-client/default.nix4
-rw-r--r--pkgs/development/python-modules/dynalite-devices/default.nix4
-rw-r--r--pkgs/development/python-modules/editables/default.nix10
-rw-r--r--pkgs/development/python-modules/einops/default.nix11
-rw-r--r--pkgs/development/python-modules/elasticsearch-dsl/default.nix4
-rw-r--r--pkgs/development/python-modules/elasticsearch/default.nix4
-rw-r--r--pkgs/development/python-modules/email-validator/default.nix20
-rw-r--r--pkgs/development/python-modules/envisage/default.nix15
-rw-r--r--pkgs/development/python-modules/eradicate/default.nix4
-rw-r--r--pkgs/development/python-modules/execnet/default.nix39
-rw-r--r--pkgs/development/python-modules/ezyrb/default.nix4
-rw-r--r--pkgs/development/python-modules/faker/default.nix4
-rw-r--r--pkgs/development/python-modules/fastapi/default.nix75
-rw-r--r--pkgs/development/python-modules/fastavro/default.nix4
-rw-r--r--pkgs/development/python-modules/faster-whisper/default.nix6
-rw-r--r--pkgs/development/python-modules/filelock/default.nix4
-rw-r--r--pkgs/development/python-modules/finvizfinance/default.nix4
-rw-r--r--pkgs/development/python-modules/flake8/default.nix4
-rw-r--r--pkgs/development/python-modules/flasgger/default.nix63
-rw-r--r--pkgs/development/python-modules/flask-appbuilder/default.nix4
-rw-r--r--pkgs/development/python-modules/flask-limiter/default.nix4
-rw-r--r--pkgs/development/python-modules/flask-login/default.nix12
-rw-r--r--pkgs/development/python-modules/flask-migrate/default.nix2
-rw-r--r--pkgs/development/python-modules/flask-restful/default.nix3
-rw-r--r--pkgs/development/python-modules/flask-restx/default.nix6
-rw-r--r--pkgs/development/python-modules/flask-security-too/default.nix4
-rw-r--r--pkgs/development/python-modules/flask-sqlalchemy/default.nix10
-rw-r--r--pkgs/development/python-modules/flask-wtf/default.nix6
-rw-r--r--pkgs/development/python-modules/flask/default.nix15
-rw-r--r--pkgs/development/python-modules/flax/default.nix4
-rw-r--r--pkgs/development/python-modules/flet-core/default.nix4
-rw-r--r--pkgs/development/python-modules/flet/default.nix4
-rw-r--r--pkgs/development/python-modules/fontmake/default.nix4
-rw-r--r--pkgs/development/python-modules/fonttools/default.nix6
-rw-r--r--pkgs/development/python-modules/formulaic/default.nix6
-rw-r--r--pkgs/development/python-modules/frozenlist/default.nix23
-rw-r--r--pkgs/development/python-modules/fsspec/default.nix9
-rw-r--r--pkgs/development/python-modules/fugashi/default.nix4
-rw-r--r--pkgs/development/python-modules/gentools/default.nix6
-rw-r--r--pkgs/development/python-modules/geoalchemy2/default.nix4
-rw-r--r--pkgs/development/python-modules/gevent/default.nix13
-rw-r--r--pkgs/development/python-modules/glean-parser/default.nix4
-rw-r--r--pkgs/development/python-modules/glfw/default.nix4
-rw-r--r--pkgs/development/python-modules/google-api-python-client/default.nix4
-rw-r--r--pkgs/development/python-modules/google-auth-oauthlib/default.nix4
-rw-r--r--pkgs/development/python-modules/google-auth/default.nix13
-rw-r--r--pkgs/development/python-modules/googleapis-common-protos/default.nix4
-rw-r--r--pkgs/development/python-modules/gphoto2/default.nix4
-rw-r--r--pkgs/development/python-modules/gptcache/default.nix8
-rw-r--r--pkgs/development/python-modules/gradio/default.nix4
-rw-r--r--pkgs/development/python-modules/graspologic/default.nix4
-rw-r--r--pkgs/development/python-modules/grpcio-health-checking/default.nix4
-rw-r--r--pkgs/development/python-modules/grpcio-status/default.nix4
-rw-r--r--pkgs/development/python-modules/grpcio-testing/default.nix4
-rw-r--r--pkgs/development/python-modules/grpcio-tools/default.nix4
-rw-r--r--pkgs/development/python-modules/gssapi/default.nix4
-rw-r--r--pkgs/development/python-modules/gst-python/default.nix4
-rw-r--r--pkgs/development/python-modules/h5netcdf/default.nix9
-rw-r--r--pkgs/development/python-modules/h5py/default.nix4
-rw-r--r--pkgs/development/python-modules/hacking/default.nix4
-rw-r--r--pkgs/development/python-modules/hatch-jupyter-builder/default.nix4
-rw-r--r--pkgs/development/python-modules/hatch-nodejs-version/default.nix4
-rw-r--r--pkgs/development/python-modules/hatch-requirements-txt/default.nix4
-rw-r--r--pkgs/development/python-modules/hdbscan/default.nix4
-rw-r--r--pkgs/development/python-modules/hdf5plugin/default.nix4
-rw-r--r--pkgs/development/python-modules/holidays/default.nix6
-rw-r--r--pkgs/development/python-modules/httpbin/default.nix29
-rw-r--r--pkgs/development/python-modules/httpcore/default.nix34
-rw-r--r--pkgs/development/python-modules/httpie/default.nix5
-rw-r--r--pkgs/development/python-modules/httpx-socks/default.nix4
-rw-r--r--pkgs/development/python-modules/httpx/default.nix4
-rw-r--r--pkgs/development/python-modules/hupper/default.nix4
-rw-r--r--pkgs/development/python-modules/hvac/default.nix4
-rw-r--r--pkgs/development/python-modules/hypothesis-auto/default.nix28
-rw-r--r--pkgs/development/python-modules/hypothesis/default.nix4
-rw-r--r--pkgs/development/python-modules/hyppo/default.nix6
-rw-r--r--pkgs/development/python-modules/ifcopenshell/default.nix6
-rw-r--r--pkgs/development/python-modules/image-go-nord/default.nix6
-rw-r--r--pkgs/development/python-modules/imageio-ffmpeg/default.nix4
-rw-r--r--pkgs/development/python-modules/imageio/default.nix4
-rw-r--r--pkgs/development/python-modules/iminuit/default.nix26
-rw-r--r--pkgs/development/python-modules/importlib-resources/default.nix4
-rw-r--r--pkgs/development/python-modules/inflect/default.nix4
-rw-r--r--pkgs/development/python-modules/influxdb/default.nix2
-rw-r--r--pkgs/development/python-modules/ipdb/default.nix2
-rw-r--r--pkgs/development/python-modules/ipykernel/default.nix4
-rw-r--r--pkgs/development/python-modules/ipython/default.nix16
-rw-r--r--pkgs/development/python-modules/ipywidgets/default.nix4
-rw-r--r--pkgs/development/python-modules/iso8601/default.nix4
-rw-r--r--pkgs/development/python-modules/jaraco-classes/default.nix8
-rw-r--r--pkgs/development/python-modules/jaraco-functools/default.nix4
-rw-r--r--pkgs/development/python-modules/jaraco-itertools/default.nix4
-rw-r--r--pkgs/development/python-modules/jaxopt/default.nix2
-rw-r--r--pkgs/development/python-modules/jedi-language-server/default.nix8
-rw-r--r--pkgs/development/python-modules/jiwer/default.nix4
-rw-r--r--pkgs/development/python-modules/jsonpickle/default.nix4
-rw-r--r--pkgs/development/python-modules/jsonpointer/default.nix4
-rw-r--r--pkgs/development/python-modules/jsonschema-spec/default.nix4
-rw-r--r--pkgs/development/python-modules/jsonschema/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyter-client/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyter-collaboration/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyter-console/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyter-core/default.nix10
-rw-r--r--pkgs/development/python-modules/jupyter-events/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyterlab-git/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyterlab-widgets/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyterlab/default.nix4
-rw-r--r--pkgs/development/python-modules/jupyterlab_server/default.nix4
-rw-r--r--pkgs/development/python-modules/justnimbus/default.nix6
-rw-r--r--pkgs/development/python-modules/kaggle/default.nix7
-rw-r--r--pkgs/development/python-modules/kaptan/default.nix18
-rw-r--r--pkgs/development/python-modules/kbcstorage/default.nix10
-rw-r--r--pkgs/development/python-modules/keras/default.nix6
-rw-r--r--pkgs/development/python-modules/keystoneauth1/default.nix9
-rw-r--r--pkgs/development/python-modules/kiwisolver/default.nix4
-rw-r--r--pkgs/development/python-modules/klein/default.nix40
-rw-r--r--pkgs/development/python-modules/kubernetes/default.nix4
-rw-r--r--pkgs/development/python-modules/labelbox/default.nix4
-rw-r--r--pkgs/development/python-modules/labgrid/default.nix6
-rw-r--r--pkgs/development/python-modules/langchain/default.nix4
-rw-r--r--pkgs/development/python-modules/langchainplus-sdk/default.nix4
-rw-r--r--pkgs/development/python-modules/langsmith/default.nix4
-rw-r--r--pkgs/development/python-modules/lark/default.nix21
-rw-r--r--pkgs/development/python-modules/ledger-bitcoin/default.nix4
-rw-r--r--pkgs/development/python-modules/ledgercomm/default.nix6
-rw-r--r--pkgs/development/python-modules/libarchive-c/default.nix6
-rw-r--r--pkgs/development/python-modules/librosa/default.nix21
-rw-r--r--pkgs/development/python-modules/lightgbm/default.nix35
-rw-r--r--pkgs/development/python-modules/limits/default.nix4
-rw-r--r--pkgs/development/python-modules/linear_operator/default.nix6
-rw-r--r--pkgs/development/python-modules/linkify-it-py/default.nix24
-rw-r--r--pkgs/development/python-modules/linode-api/default.nix6
-rw-r--r--pkgs/development/python-modules/loguru/default.nix4
-rw-r--r--pkgs/development/python-modules/m2r/default.nix4
-rw-r--r--pkgs/development/python-modules/magic-wormhole/default.nix39
-rw-r--r--pkgs/development/python-modules/manifestoo-core/default.nix4
-rw-r--r--pkgs/development/python-modules/markdown-it-py/default.nix4
-rw-r--r--pkgs/development/python-modules/mashumaro/default.nix4
-rw-r--r--pkgs/development/python-modules/matplotlib/default.nix4
-rw-r--r--pkgs/development/python-modules/maya/default.nix32
-rw-r--r--pkgs/development/python-modules/md2gemini/default.nix4
-rw-r--r--pkgs/development/python-modules/mdformat-gfm/default.nix6
-rw-r--r--pkgs/development/python-modules/mdit-py-plugins/default.nix4
-rw-r--r--pkgs/development/python-modules/mediapy/default.nix4
-rw-r--r--pkgs/development/python-modules/meep/default.nix6
-rw-r--r--pkgs/development/python-modules/mesa/default.nix4
-rw-r--r--pkgs/development/python-modules/meson-python/add-build-flags.sh16
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-rw-r--r--pkgs/development/python-modules/sv-ttk/default.nix4
-rw-r--r--pkgs/development/python-modules/symengine/default.nix6
-rw-r--r--pkgs/development/python-modules/tableauserverclient/default.nix4
-rw-r--r--pkgs/development/python-modules/tables/default.nix6
-rw-r--r--pkgs/development/python-modules/tabula-py/default.nix4
-rw-r--r--pkgs/development/python-modules/tblib/default.nix4
-rw-r--r--pkgs/development/python-modules/tenacity/default.nix4
-rw-r--r--pkgs/development/python-modules/tensorboard-data-server/default.nix4
-rw-r--r--pkgs/development/python-modules/tensorboard/default.nix4
-rw-r--r--pkgs/development/python-modules/termcolor/default.nix4
-rw-r--r--pkgs/development/python-modules/testfixtures/default.nix4
-rw-r--r--pkgs/development/python-modules/testtools/default.nix4
-rw-r--r--pkgs/development/python-modules/textacy/default.nix4
-rw-r--r--pkgs/development/python-modules/tf2onnx/default.nix6
-rw-r--r--pkgs/development/python-modules/thefuzz/default.nix4
-rw-r--r--pkgs/development/python-modules/thinc/default.nix14
-rw-r--r--pkgs/development/python-modules/tifffile/default.nix4
-rw-r--r--pkgs/development/python-modules/tiktoken/Cargo.lock181
-rw-r--r--pkgs/development/python-modules/tiktoken/default.nix19
-rw-r--r--pkgs/development/python-modules/tiledb/default.nix4
-rw-r--r--pkgs/development/python-modules/time-machine/default.nix4
-rw-r--r--pkgs/development/python-modules/timm/default.nix4
-rw-r--r--pkgs/development/python-modules/tinycss2/default.nix6
-rw-r--r--pkgs/development/python-modules/torchinfo/default.nix4
-rw-r--r--pkgs/development/python-modules/torchlibrosa/default.nix13
-rw-r--r--pkgs/development/python-modules/torchmetrics/default.nix4
-rw-r--r--pkgs/development/python-modules/towncrier/default.nix4
-rw-r--r--pkgs/development/python-modules/tox/default.nix4
-rw-r--r--pkgs/development/python-modules/tqdm/default.nix12
-rw-r--r--pkgs/development/python-modules/trainer/default.nix4
-rw-r--r--pkgs/development/python-modules/traitlets/default.nix4
-rw-r--r--pkgs/development/python-modules/traitsui/default.nix11
-rw-r--r--pkgs/development/python-modules/treeo/default.nix6
-rw-r--r--pkgs/development/python-modules/trio/default.nix21
-rw-r--r--pkgs/development/python-modules/trove-classifiers/default.nix4
-rw-r--r--pkgs/development/python-modules/twisted/default.nix83
-rw-r--r--pkgs/development/python-modules/txredisapi/default.nix31
-rw-r--r--pkgs/development/python-modules/typed-settings/default.nix4
-rw-r--r--pkgs/development/python-modules/typeguard/default.nix26
-rw-r--r--pkgs/development/python-modules/types-docutils/default.nix4
-rw-r--r--pkgs/development/python-modules/types-pillow/default.nix4
-rw-r--r--pkgs/development/python-modules/types-setuptools/default.nix4
-rw-r--r--pkgs/development/python-modules/types-toml/default.nix4
-rw-r--r--pkgs/development/python-modules/types-typed-ast/default.nix4
-rw-r--r--pkgs/development/python-modules/tzdata/default.nix4
-rw-r--r--pkgs/development/python-modules/tzlocal/default.nix4
-rw-r--r--pkgs/development/python-modules/uamqp/default.nix6
-rw-r--r--pkgs/development/python-modules/uc-micro-py/default.nix24
-rw-r--r--pkgs/development/python-modules/ucsmsdk/default.nix6
-rw-r--r--pkgs/development/python-modules/ufo2ft/default.nix4
-rw-r--r--pkgs/development/python-modules/ufoLib2/default.nix4
-rw-r--r--pkgs/development/python-modules/uharfbuzz/default.nix6
-rw-r--r--pkgs/development/python-modules/ujson/default.nix4
-rw-r--r--pkgs/development/python-modules/univers/default.nix4
-rw-r--r--pkgs/development/python-modules/urllib3/default.nix11
-rw-r--r--pkgs/development/python-modules/urwid/default.nix48
-rw-r--r--pkgs/development/python-modules/uvicorn/default.nix6
-rw-r--r--pkgs/development/python-modules/validators/default.nix8
-rw-r--r--pkgs/development/python-modules/vcrpy/default.nix8
-rw-r--r--pkgs/development/python-modules/vector/default.nix4
-rw-r--r--pkgs/development/python-modules/velbus-aio/default.nix2
-rw-r--r--pkgs/development/python-modules/virtualenv/default.nix4
-rw-r--r--pkgs/development/python-modules/vncdo/default.nix6
-rw-r--r--pkgs/development/python-modules/vulture/default.nix4
-rw-r--r--pkgs/development/python-modules/w3lib/default.nix4
-rw-r--r--pkgs/development/python-modules/wagtail-localize/default.nix4
-rw-r--r--pkgs/development/python-modules/wagtail/default.nix6
-rw-r--r--pkgs/development/python-modules/watchfiles/default.nix7
-rw-r--r--pkgs/development/python-modules/watermark/default.nix6
-rw-r--r--pkgs/development/python-modules/weaviate-client/default.nix4
-rw-r--r--pkgs/development/python-modules/webcolors/default.nix11
-rw-r--r--pkgs/development/python-modules/websocket-client/default.nix4
-rw-r--r--pkgs/development/python-modules/websockets/default.nix6
-rw-r--r--pkgs/development/python-modules/werkzeug/default.nix28
-rw-r--r--pkgs/development/python-modules/widgetsnbextension/default.nix4
-rw-r--r--pkgs/development/python-modules/willow/default.nix50
-rw-r--r--pkgs/development/python-modules/wtf-peewee/default.nix17
-rw-r--r--pkgs/development/python-modules/xapp/default.nix4
-rw-r--r--pkgs/development/python-modules/xarray/default.nix4
-rw-r--r--pkgs/development/python-modules/xdg/default.nix6
-rw-r--r--pkgs/development/python-modules/xformers/default.nix6
-rw-r--r--pkgs/development/python-modules/xxhash/default.nix4
-rw-r--r--pkgs/development/python-modules/xyzservices/default.nix14
-rw-r--r--pkgs/development/python-modules/yangson/default.nix4
-rw-r--r--pkgs/development/python-modules/yark/default.nix4
-rw-r--r--pkgs/development/python-modules/zarr/default.nix4
-rw-r--r--pkgs/development/python-modules/zict/default.nix31
-rw-r--r--pkgs/development/python-modules/zope-deferredimport/default.nix4
-rw-r--r--pkgs/development/python-modules/zope-testbrowser/default.nix4
-rw-r--r--pkgs/development/python-modules/zopfli/default.nix4
-rw-r--r--pkgs/development/python-modules/zstandard/default.nix4
698 files changed, 4563 insertions, 3385 deletions
diff --git a/pkgs/development/python-modules/accelerate/default.nix b/pkgs/development/python-modules/accelerate/default.nix
index 9aefa2294878..de51ac126950 100644
--- a/pkgs/development/python-modules/accelerate/default.nix
+++ b/pkgs/development/python-modules/accelerate/default.nix
@@ -2,7 +2,6 @@
 , lib
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 , pythonAtLeast
 , pythonOlder
 , pytestCheckHook
@@ -19,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "accelerate";
-  version = "0.21.0";
+  version = "0.23.0";
   format = "pyproject";
   disabled = pythonOlder "3.7";
 
@@ -27,18 +26,9 @@ buildPythonPackage rec {
     owner = "huggingface";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-BwM3gyNhsRkxtxLNrycUGwBmXf8eq/7b56/ykMryt5w=";
+    hash = "sha256-pFkEgE1NGLPBW1CeGU0RJr+1Nj/y58ZcljyOnJuR47A=";
   };
 
-  patches = [
-    # fix import error when torch>=2.0.1 and torch.distributed is disabled
-    # https://github.com/huggingface/accelerate/pull/1800
-    (fetchpatch {
-      url = "https://github.com/huggingface/accelerate/commit/32701039d302d3875c50c35ab3e76c467755eae9.patch";
-      hash = "sha256-Hth7qyOfx1sC8UaRdbYTnyRXD/VRKf41GtLc0ee1t2I=";
-    })
-  ];
-
   nativeBuildInputs = [ setuptools ];
 
   propagatedBuildInputs = [
@@ -64,6 +54,19 @@ buildPythonPackage rec {
     # try to download data:
     "FeatureExamplesTests"
     "test_infer_auto_device_map_on_t0pp"
+
+    # require socket communication
+    "test_explicit_dtypes"
+    "test_gated"
+    "test_invalid_model_name"
+    "test_invalid_model_name_transformers"
+    "test_no_metadata"
+    "test_no_split_modules"
+    "test_remote_code"
+    "test_transformers_model"
+
+    # set the environment variable, CC, which conflicts with standard environment
+    "test_patch_environment_key_exists"
   ] ++ lib.optionals (stdenv.isLinux && stdenv.isAarch64) [
     # usual aarch64-linux RuntimeError: DataLoader worker (pid(s) <...>) exited unexpectedly
     "CheckpointTest"
diff --git a/pkgs/development/python-modules/adafruit-nrfutil/default.nix b/pkgs/development/python-modules/adafruit-nrfutil/default.nix
index 43071fa93f0e..0197bf21927f 100644
--- a/pkgs/development/python-modules/adafruit-nrfutil/default.nix
+++ b/pkgs/development/python-modules/adafruit-nrfutil/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "adafruit-nrfutil";
-  version = "0.5.3.post17";
+  version = "1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -20,8 +20,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "adafruit";
     repo = "Adafruit_nRF52_nrfutil";
-    rev = version;
-    hash = "sha256-mHHKOQE9AGBX8RAyaPOy+JS3fTs98+AFdq9qsVy7go4=";
+    rev = "refs/tags/appveyor-test-release-${version}";
+    hash = "sha256-wsspDg8XwEtJwJye6Z3TXaIN1TcfI7gYDah3L/xiiLo=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/aenum/default.nix b/pkgs/development/python-modules/aenum/default.nix
index ba7fcaa46e64..d1ff94519646 100644
--- a/pkgs/development/python-modules/aenum/default.nix
+++ b/pkgs/development/python-modules/aenum/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "aenum";
-  version = "3.1.12";
+  version = "3.1.15";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-PlMckYYKgfiF9+bpfSGa6XcsuJlYAIR4iTXa19l0LvA=";
+    hash = "sha256-jL12zRjE+HD/ObJChNPqAo++hzGljfOqWB5DTFdblVk=";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/afdko/default.nix b/pkgs/development/python-modules/afdko/default.nix
index 214a85f8c915..a821e9d87890 100644
--- a/pkgs/development/python-modules/afdko/default.nix
+++ b/pkgs/development/python-modules/afdko/default.nix
@@ -34,14 +34,14 @@
 
 buildPythonPackage rec {
   pname = "afdko";
-  version = "3.9.3";
+  version = "4.0.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-v0fIhf3P5Xjdn5/ryRNj0Q2YHAisMqi5RTmJQabaUO0=";
+    hash = "sha256-66faoWBuCW0lQZP8/mBJLT+ErRGBl396HdG1RfPOYcM=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/aioairq/default.nix b/pkgs/development/python-modules/aioairq/default.nix
index 342a2fc978f3..73be4e3f64cf 100644
--- a/pkgs/development/python-modules/aioairq/default.nix
+++ b/pkgs/development/python-modules/aioairq/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "aioairq";
-  version = "0.2.4";
+  version = "0.3.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.9";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "CorantGmbH";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-+5FyBfsB3kjyX/V9CdZ072mZ3THyvALyym+uk7/kZLo=";
+    hash = "sha256-9OO3ox6q08QQcYfz4ArsKy/6jR329bAQPUo+mVYuhJs=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/aiobotocore/default.nix b/pkgs/development/python-modules/aiobotocore/default.nix
index 6f7ef895c373..9de5593a2562 100644
--- a/pkgs/development/python-modules/aiobotocore/default.nix
+++ b/pkgs/development/python-modules/aiobotocore/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "aiobotocore";
-  version = "2.5.2";
+  version = "2.6.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "aio-libs";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-twIo5qJht7oZye5lbiPwLFa/5dCwgCm+OkwuCuWU0cU=";
+    hash = "sha256-e8FBUG08yWNL9B51Uv4ftYx1C0kcdoweOreUtvvvTAk=";
   };
 
   # Relax version constraints: aiobotocore works with newer botocore versions
diff --git a/pkgs/development/python-modules/aiofiles/default.nix b/pkgs/development/python-modules/aiofiles/default.nix
index 28d4f5f368dc..fe72ff28c78b 100644
--- a/pkgs/development/python-modules/aiofiles/default.nix
+++ b/pkgs/development/python-modules/aiofiles/default.nix
@@ -2,7 +2,7 @@
 , lib
 , buildPythonPackage
 , fetchFromGitHub
-, poetry-core
+, hatchling
 , pytest-asyncio
 , pytestCheckHook
 , pythonOlder
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "aiofiles";
-  version = "23.1.0";
+  version = "23.2.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -19,11 +19,11 @@ buildPythonPackage rec {
     owner = "Tinche";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-ouBqqt0CJYxxQqbG9jn4p8zO+nKjqZgPjZpiZic67ss=";
+    hash = "sha256-EbRQD/AoTMWAlPOMWmD0UdFjRyjt5MUBkJtcydUCdHM=";
   };
 
   nativeBuildInputs = [
-    poetry-core
+    hatchling
   ];
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/aiogram/default.nix b/pkgs/development/python-modules/aiogram/default.nix
index ceb3f9603ede..7638c4efb48f 100644
--- a/pkgs/development/python-modules/aiogram/default.nix
+++ b/pkgs/development/python-modules/aiogram/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "aiogram";
-  version = "2.25.1";
+  version = "3.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -25,8 +25,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "aiogram";
     repo = "aiogram";
-    rev = "v${version}";
-    hash = "sha256-g8nuvna7DpXElvjBehnGKHUsrf+nyQcoKNnyR59RALo=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-bWwK761gn7HsR9ObcBDfvQH0fJfTAo0QAcL/HcNdHik=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/aiohttp-socks/default.nix b/pkgs/development/python-modules/aiohttp-socks/default.nix
index 9b157264a7e9..0a60d0af2801 100644
--- a/pkgs/development/python-modules/aiohttp-socks/default.nix
+++ b/pkgs/development/python-modules/aiohttp-socks/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "aiohttp-socks";
-  version = "0.8.1";
+  version = "0.8.3";
 
   src = fetchPypi {
     inherit version;
     pname = "aiohttp_socks";
-    hash = "sha256-duWEJDS5Ts3EWNRZ8MJcD7buMh3FRKA+bJiO3P7QWz0=";
+    hash = "sha256-aqtSj2aeCHMBj9N3c7gzouK6KEJDvmcoF/pAG8eUHsY=";
   };
 
   propagatedBuildInputs = [ aiohttp attrs python-socks ];
diff --git a/pkgs/development/python-modules/aiojobs/default.nix b/pkgs/development/python-modules/aiojobs/default.nix
index a3b982e22d5a..094e7509ee3c 100644
--- a/pkgs/development/python-modules/aiojobs/default.nix
+++ b/pkgs/development/python-modules/aiojobs/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "aiojobs";
-  version = "1.1.0";
+  version = "1.2.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = "aio-libs";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-FHdEVt/XXmuTrPAETyod3fHJIK1wg957/+QMAhZG1xk=";
+    hash = "sha256-/+PTHLrZyf2UuYkLWkNgzf9amFywDJnP2OKVWvARcAA=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/aiosql/default.nix b/pkgs/development/python-modules/aiosql/default.nix
index 88a1c7aa37ca..d7d87003e1a7 100644
--- a/pkgs/development/python-modules/aiosql/default.nix
+++ b/pkgs/development/python-modules/aiosql/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "aiosql";
-  version = "8.0";
+  version = "9.0";
   outputs = [ "out" "doc" ];
   format = "pyproject";
 
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "nackjicholson";
     repo = "aiosql";
     rev = "refs/tags/${version}";
-    hash = "sha256-cE89w1CbDqlkryRr3yAdSxAtWzV1+O+n41ihTwYWelE=";
+    hash = "sha256-AwuZ3y/qAyZzffTG6mHLk0b+zFB9307VjAX8g1pvWto=";
   };
 
   sphinxRoot = "docs/source";
diff --git a/pkgs/development/python-modules/aioxmpp/default.nix b/pkgs/development/python-modules/aioxmpp/default.nix
index edc9b8def3da..6c7660f9f3e1 100644
--- a/pkgs/development/python-modules/aioxmpp/default.nix
+++ b/pkgs/development/python-modules/aioxmpp/default.nix
@@ -60,6 +60,11 @@ buildPythonPackage rec {
     "benchmarks"
   ];
 
+  disabledTests = [
+    # AttributeError: 'zoneinfo.ZoneInfo' object has no attribute 'normalize'
+    "test_convert_field_datetime_default_locale"
+  ];
+
   meta = {
     changelog = "https://github.com/horazont/aioxmpp/blob/${src.rev}/docs/api/changelog.rst";
     description = "Pure-python XMPP library for asyncio";
diff --git a/pkgs/development/python-modules/alembic/default.nix b/pkgs/development/python-modules/alembic/default.nix
index 4a60bfca201f..c1bb0f1d3c7d 100644
--- a/pkgs/development/python-modules/alembic/default.nix
+++ b/pkgs/development/python-modules/alembic/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "alembic";
-  version = "1.9.4";
+  version = "1.12.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-TTvTLs27e7+0ip/p5tb9aoMaG1nQPibikiECNzc+fbU=";
+    hash = "sha256-jnZFwy5PIAZ15p8HRUFTNetZo2Y/X+tIer+gswxFiIs=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/allure-behave/default.nix b/pkgs/development/python-modules/allure-behave/default.nix
index 2dc57281e8f3..a67ff5e98d9b 100644
--- a/pkgs/development/python-modules/allure-behave/default.nix
+++ b/pkgs/development/python-modules/allure-behave/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "allure-behave";
-  version = "2.12.0";
+  version = "2.13.2";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-CxdB1gliajS6dUUhnD+yRMVj0zglGEwZC6RDmirH+pg=";
+    hash = "sha256-mxXb7+1tvf5EmVbD6eOmGfza9lAjbEVoxWZBSeZmPxQ=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/allure-pytest/default.nix b/pkgs/development/python-modules/allure-pytest/default.nix
index a08f4bc93a43..cdfbf4c142c5 100644
--- a/pkgs/development/python-modules/allure-pytest/default.nix
+++ b/pkgs/development/python-modules/allure-pytest/default.nix
@@ -18,13 +18,13 @@
 
 buildPythonPackage rec {
   pname = "allure-pytest";
-  version = "2.12.0";
+  version = "2.13.2";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-hbc7Hb6ZCLpPhLgBGKk+EEnALdWTIJJg2MHJUM8ob2w=";
+    hash = "sha256-IiQxWejsgc4rUlS0ATgCGYghsbQvEY9p1KKJOWYHx7M=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/allure-python-commons-test/default.nix b/pkgs/development/python-modules/allure-python-commons-test/default.nix
index aaba8d9fccf7..c358a2f14d7f 100644
--- a/pkgs/development/python-modules/allure-python-commons-test/default.nix
+++ b/pkgs/development/python-modules/allure-python-commons-test/default.nix
@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "allure-python-commons-test";
-  version = "2.12.0";
+  version = "2.13.2";
 
   disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-TaeQF9EZ5tLMmVSwnWgrxsRz5lh0O3BZLLEUawd8BeI=";
+    hash = "sha256-Xh6NtqiuTg7UxKqJ7/p45rCUQGWiGDEaNAslzeYtgfg=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/allure-python-commons/default.nix b/pkgs/development/python-modules/allure-python-commons/default.nix
index b92ee139b6ba..0b50f23f77c4 100644
--- a/pkgs/development/python-modules/allure-python-commons/default.nix
+++ b/pkgs/development/python-modules/allure-python-commons/default.nix
@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "allure-python-commons";
-  version = "2.12.0";
+  version = "2.13.2";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1cNi3QEWfwhjMYIumxkS1Ob9bLwtGgBt0EjnfoKnrnM=";
+    hash = "sha256-igNoEzAjGx3q3Ya5f/aIQcZZEyARSuY4Vw8e1g16IDM=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/amazon-ion/default.nix b/pkgs/development/python-modules/amazon-ion/default.nix
index 21db57509745..0a2479dd38f4 100644
--- a/pkgs/development/python-modules/amazon-ion/default.nix
+++ b/pkgs/development/python-modules/amazon-ion/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "amazon-ion";
-  version = "0.9.3";
+  version = "0.10.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -18,9 +18,9 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "amzn";
     repo = "ion-python";
-    rev = "v${version}";
+    rev = "refs/tags/v${version}";
     fetchSubmodules = true;
-    hash = "sha256-FLwzHcge+vLcRY4gOzrxS3kWlprCkRXX5KeGOoTJDSw=";
+    hash = "sha256-pCm3jd/dVqO/uIvT5N/w5yoUWU6ni62Pl2A862e+qSk=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/amazon-kclpy/default.nix b/pkgs/development/python-modules/amazon-kclpy/default.nix
index 623ab60ed63a..fca55e3bc0dc 100644
--- a/pkgs/development/python-modules/amazon-kclpy/default.nix
+++ b/pkgs/development/python-modules/amazon-kclpy/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "amazon-kclpy";
-  version = "2.1.1";
+  version = "2.1.3";
 
   src = fetchFromGitHub {
     owner = "awslabs";
     repo = "amazon-kinesis-client-python";
     rev = "refs/tags/v${version}";
-    hash = "sha256-Z0MC4SbZS82beMA7UunEfs4KvrmhW5xAhFeb7WXA7DM=";
+    hash = "sha256-3BhccRJd6quElXZSix1aVIqWr9wdcTTziDhnIOLiPPo=";
   };
 
   # argparse is just required for python2.6
diff --git a/pkgs/development/python-modules/ansible/default.nix b/pkgs/development/python-modules/ansible/default.nix
index f7c41aa12ba2..71bd13c7ab49 100644
--- a/pkgs/development/python-modules/ansible/default.nix
+++ b/pkgs/development/python-modules/ansible/default.nix
@@ -21,7 +21,7 @@
 
 let
   pname = "ansible";
-  version = "8.3.0";
+  version = "8.4.0";
 in
 buildPythonPackage {
   inherit pname version;
@@ -31,7 +31,7 @@ buildPythonPackage {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-XlgAHX1twz5dFWyjQ4g7YT7JiPaTZLCkP3Ek/ktb4vI=";
+    hash = "sha256-8zxJJpBZL60SaE6Yl/beLaFcn24ey3kTdwOgZHCvLOY=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/anthropic/default.nix b/pkgs/development/python-modules/anthropic/default.nix
index 8344af439070..ef0ffe778e46 100644
--- a/pkgs/development/python-modules/anthropic/default.nix
+++ b/pkgs/development/python-modules/anthropic/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "anthropic";
-  version = "0.3.11";
+  version = "0.3.13";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     owner = "anthropics";
     repo = "anthropic-sdk-python";
     rev = "refs/tags/v${version}";
-    hash = "sha256-bjagT0I0/N76CGf1b8EBNyOTzPBWybr2I2yO5NWO3po=";
+    hash = "sha256-2sw/tzbKd0d4sSHM+PYTE/XeqkycFFLfG1c/lyrU4Jc=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/anyio/default.nix b/pkgs/development/python-modules/anyio/default.nix
index 3508554d308d..06112cccdc3f 100644
--- a/pkgs/development/python-modules/anyio/default.nix
+++ b/pkgs/development/python-modules/anyio/default.nix
@@ -28,7 +28,7 @@
 
 buildPythonPackage rec {
   pname = "anyio";
-  version = "3.7.1";
+  version = "4.0.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -36,8 +36,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "agronholm";
     repo = pname;
-    rev = version;
-    hash = "sha256-9/pAcVTzw9v57E5l4d8zNyBJM+QNGEuLKrQ0WUBW5xw=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-gUFd2gHWIElYfzOvg7Yx7iJyhU6+iAcJpHTVsJtxTsk=";
   };
 
   env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
@@ -84,6 +84,10 @@ buildPythonPackage rec {
     "test_exception_group_children"
     "test_exception_group_host"
     "test_exception_group_filtering"
+    # timing sensitive
+    # assert threading.active_count() == initial_count + 1
+    # assert 4 == (4 + 1)
+    "test_run_sync_from_thread_pooling"
   ] ++ lib.optionals stdenv.isDarwin [
     # PermissionError: [Errno 1] Operation not permitted: '/dev/console'
     "test_is_block_device"
diff --git a/pkgs/development/python-modules/aocd/default.nix b/pkgs/development/python-modules/aocd/default.nix
index b58c31ea7320..f1a31ee243b8 100644
--- a/pkgs/development/python-modules/aocd/default.nix
+++ b/pkgs/development/python-modules/aocd/default.nix
@@ -10,6 +10,9 @@
 , pytest-raisin
 , pytest-socket
 , requests-mock
+, pook
+, numpy
+, rich
 , pebble
 , python-dateutil
 , termcolor
@@ -20,8 +23,8 @@
 
 buildPythonPackage rec {
   pname = "aocd";
-  version = "1.3.2";
-  format = "setuptools";
+  version = "2.0.1";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
@@ -29,7 +32,7 @@ buildPythonPackage rec {
     owner = "wimglenn";
     repo = "advent-of-code-data";
     rev = "refs/tags/v${version}";
-    hash = "sha256-yY8ItXZZp0yVs4viJzduMPq8Q8NKd34uvlGaVUE2GjQ=";
+    hash = "sha256-YZvcR97uHceloqwoP+azaBmj3GLusYNbItLIaeJ3QD0=";
   };
 
   propagatedBuildInputs = [
@@ -40,6 +43,7 @@ buildPythonPackage rec {
     pebble
     tzlocal
     setuptools
+    rich # for example parser aoce. must either be here or checkInputs
   ];
 
   # Too many failing tests
@@ -52,6 +56,33 @@ buildPythonPackage rec {
     "test_run_and_autosubmit"
     "test_run_and_no_autosubmit"
     "test_load_input_from_file"
+    "test_examples_cache" # IndexError: list index out of range
+    "test_example_partial" # ValueError: not enough values to unpack (expected 1, got 0)
+    "test_run_against_examples" # AssertionError: assert '2022/25 - The Puzzle Title' in ''
+    "test_aocd_no_examples" # SystemExit: 2
+    "test_aocd_examples" # SystemExit: 2
+    "test_aoce" # SystemExit: 1
+
+    # TypeError: sequence item 0: expected str instance, bool found
+    # Likely because they use `pook.get` to get a webpage
+    "test_submit_prevents_bad_guesses_too_high"
+    "test_submit_prevents_bad_guesses_too_low"
+    "test_submit_prevents_bad_guesses_known_incorrect"
+    "test_submit_correct_answer"
+    "test_correct_submit_reopens_browser_on_answer_page"
+    "test_server_error"
+    "test_submit_when_already_solved"
+    "test_submitted_too_recently_autoretry"
+    "test_submitted_too_recently_autoretry_quiet"
+    "test_submit_when_submitted_too_recently_no_autoretry"
+    "test_submit_wrong_answer "
+    "test_correct_submit_records_good_answer"
+    "test_submits_for_partb_when_already_submitted_parta"
+    "test_submit_when_parta_solved_but_answer_unsaved"
+    "test_submit_saves_both_answers_if_possible"
+    "test_submit_puts_level1_by_default"
+    "test_cannot_submit_same_bad_answer_twice"
+    "test_submit_float_warns"
   ];
 
   nativeCheckInputs = [
@@ -60,6 +91,11 @@ buildPythonPackage rec {
     pytest-freezegun
     pytest-raisin
     pytest-socket
+  ];
+
+  checkInputs = [
+    pook
+    numpy
     requests-mock
   ];
 
diff --git a/pkgs/development/python-modules/apache-beam/default.nix b/pkgs/development/python-modules/apache-beam/default.nix
index 92a9203a93f6..d0e36a989b94 100644
--- a/pkgs/development/python-modules/apache-beam/default.nix
+++ b/pkgs/development/python-modules/apache-beam/default.nix
@@ -48,13 +48,13 @@
 
 buildPythonPackage rec {
   pname = "apache-beam";
-  version = "2.45.0";
+  version = "2.50.0";
 
   src = fetchFromGitHub {
     owner = "apache";
     repo = "beam";
     rev = "refs/tags/v${version}";
-    hash = "sha256-e+6Vt+SlOxi16udsdx7WFoDWYupuXhggpoEZPe4tPr0=";
+    hash = "sha256-qaxYWPVdMlegvH/W66UBoQbcQ5Ac/3DNoQs8xo+KfLc=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/aprslib/default.nix b/pkgs/development/python-modules/aprslib/default.nix
index ce73dadd8d66..ab56bf58b8e3 100644
--- a/pkgs/development/python-modules/aprslib/default.nix
+++ b/pkgs/development/python-modules/aprslib/default.nix
@@ -2,7 +2,6 @@
 , buildPythonPackage
 , fetchFromGitHub
 , fetchpatch
-, mox3
 , pytestCheckHook
 }:
 
@@ -24,8 +23,9 @@ buildPythonPackage rec {
     })
   ];
 
+  doCheck = false; # mox3 is disabled on python311
+
   nativeCheckInputs = [
-    mox3
     pytestCheckHook
   ];
 
diff --git a/pkgs/development/python-modules/apsw/default.nix b/pkgs/development/python-modules/apsw/default.nix
index 5964274881c6..59576a129d68 100644
--- a/pkgs/development/python-modules/apsw/default.nix
+++ b/pkgs/development/python-modules/apsw/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "apsw";
-  version = "3.42.0.0";
+  version = "3.43.1.0";
   format = "setuptools";
 
   disabled = isPyPy;
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "rogerbinns";
     repo = "apsw";
     rev = "refs/tags/${version}";
-    hash = "sha256-pLkYTyf2BGRLs4bChb+eo2i5gRRUUJDFyfCBTSJ1RkQ=";
+    hash = "sha256-x+bSft37DgF2tXXCL6ac86g1+mj/wJeDLoCSiVSXedA=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/argon2-cffi-bindings/default.nix b/pkgs/development/python-modules/argon2-cffi-bindings/default.nix
index 3f1f3f86666c..77182cbd6a43 100644
--- a/pkgs/development/python-modules/argon2-cffi-bindings/default.nix
+++ b/pkgs/development/python-modules/argon2-cffi-bindings/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, libargon2
 , cffi
 , setuptools-scm
 }:
@@ -14,14 +15,19 @@ buildPythonPackage rec {
     sha256 = "bb89ceffa6c791807d1305ceb77dbfacc5aa499891d2c55661c6459651fc39e3";
   };
 
+  buildInputs = [ libargon2 ];
+
   nativeBuildInputs = [
     setuptools-scm
+    cffi
   ];
 
   propagatedBuildInputs = [
     cffi
   ];
 
+  env.ARGON2_CFFI_USE_SYSTEM = 1;
+
   # tarball doesn't include tests, but the upstream tests are minimal
   doCheck = false;
   pythonImportsCheck = [ "_argon2_cffi_bindings" ];
diff --git a/pkgs/development/python-modules/argon2-cffi/default.nix b/pkgs/development/python-modules/argon2-cffi/default.nix
index 2282a06e5c64..da9022c93f19 100644
--- a/pkgs/development/python-modules/argon2-cffi/default.nix
+++ b/pkgs/development/python-modules/argon2-cffi/default.nix
@@ -1,46 +1,32 @@
-{ cffi
-, six
-, enum34
-, hypothesis
-, pytest
-, wheel
+{ hypothesis
+, pytestCheckHook
 , buildPythonPackage
 , fetchPypi
-, flit-core
-, isPy3k
 , lib
-, stdenv
+, hatchling
+, hatch-vcs
+, hatch-fancy-pypi-readme
 , argon2-cffi-bindings
 }:
 
 buildPythonPackage rec {
   pname = "argon2-cffi";
-  version = "21.3.0";
+  version = "23.1.0";
   format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    sha256 = "d384164d944190a7dd7ef22c6aa3ff197da12962bd04b17f64d4e93d934dba5b";
+    pname = "argon2_cffi";
+    inherit version;
+    hash = "sha256-h5w+eaJynOdo67fTbUYJ46eKTKLsOp8SKGygV+PQ2wg=";
   };
 
-  nativeBuildInputs = [
-    flit-core
-  ];
+  nativeBuildInputs = [ hatchling hatch-vcs hatch-fancy-pypi-readme ];
 
-  propagatedBuildInputs = [ cffi six argon2-cffi-bindings ]
-    ++ lib.optional (!isPy3k) enum34;
+  propagatedBuildInputs = [ argon2-cffi-bindings ];
 
-  propagatedNativeBuildInputs = [
-    argon2-cffi-bindings
-    cffi
-  ];
+  nativeCheckInputs = [ hypothesis pytestCheckHook ];
 
-  ARGON2_CFFI_USE_SSE2 = lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) "0";
-
-  nativeCheckInputs = [ hypothesis pytest wheel ];
-  checkPhase = ''
-    pytest tests
-  '';
+  pythonImportsCheck = [ "argon2" ];
 
   meta = with lib; {
     description = "Secure Password Hashes for Python";
diff --git a/pkgs/development/python-modules/argos-translate-files/default.nix b/pkgs/development/python-modules/argos-translate-files/default.nix
index 1acab31b723c..0f0e3ea22354 100644
--- a/pkgs/development/python-modules/argos-translate-files/default.nix
+++ b/pkgs/development/python-modules/argos-translate-files/default.nix
@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "argos-translate-files";
-  version = "1.1.3";
+  version = "1.1.4";
 
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c6931ea8fbabdc24903ceaabfe848be0fa4a0477d00451a8dfbc1525b623f0ba";
+    sha256 = "sha256-YSTqqd+Kv2QVlAjA0lf4IRx7rJ1DmvB0JIReBv3yZcM=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/argostranslate/default.nix b/pkgs/development/python-modules/argostranslate/default.nix
index 8a1cadfb8803..2347730ad4cb 100644
--- a/pkgs/development/python-modules/argostranslate/default.nix
+++ b/pkgs/development/python-modules/argostranslate/default.nix
@@ -18,13 +18,13 @@ let
 in
 buildPythonPackage rec {
   pname = "argostranslate";
-  version = "1.8.0";
+  version = "1.8.1";
 
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9b109255d6a2c692c6f3bfbde494d1a27b3d5ed1c1d1d78711cdc1b1e3744c64";
+    sha256 = "sha256-8eVmEHwsQ9/5NPmKJzZ4aX4nkh4+mna5K1BC+lXLXcE=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/ariadne/default.nix b/pkgs/development/python-modules/ariadne/default.nix
index 23d45893fe4f..3810934eefeb 100644
--- a/pkgs/development/python-modules/ariadne/default.nix
+++ b/pkgs/development/python-modules/ariadne/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "ariadne";
-  version = "0.18.1";
+  version = "0.20.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -26,7 +26,7 @@ buildPythonPackage rec {
     owner = "mirumee";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-E7uC+l0Yjol8UPLF4CV+PN49tOUJXNUS5yYdF1oyfwU=";
+    hash = "sha256-v3CaLMTo/zbNEoE3K+aWnFTCgLetcnN7vOU/sFqLq2k=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/array-record/default.nix b/pkgs/development/python-modules/array-record/default.nix
index f278c34fbe1d..1c82445f0e4f 100644
--- a/pkgs/development/python-modules/array-record/default.nix
+++ b/pkgs/development/python-modules/array-record/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "array-record";
-  version = "0.4.0";
+  version = "0.4.1";
   format = "wheel";
 
   disabled = python.pythonVersion != "3.10";
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     pname = "array_record";
     dist = "py310";
     python = "py310";
-    hash = "sha256-VHDU6RLR/z3/tNxJiDdAruz1cva6cHu5NzMlsKrLYXg=";
+    hash = "sha256-agyO1v36ryzs09XGucE+EWrTKZZJYRyP0YTWRVf7q6g=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/arviz/default.nix b/pkgs/development/python-modules/arviz/default.nix
index fee3f12b80ca..b37e7d9a8a18 100644
--- a/pkgs/development/python-modules/arviz/default.nix
+++ b/pkgs/development/python-modules/arviz/default.nix
@@ -32,16 +32,16 @@
 
 buildPythonPackage rec {
   pname = "arviz";
-  version = "0.15.1";
-  format = "setuptools";
+  version = "0.16.1";
+  pyproject = true;
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.9";
 
   src = fetchFromGitHub {
     owner = "arviz-devs";
-    repo = pname;
+    repo = "arviz";
     rev = "refs/tags/v${version}";
-    hash = "sha256-jjA+yltvpPZldIxXXqu1bXCLqpiU5/NBYTPlI9ImGVs=";
+    hash = "sha256-kixWGj0M0flTq5rXSiPB0nfZaGYRvvMBGAJpehdW8KY=";
   };
 
   propagatedBuildInputs = [
@@ -93,6 +93,10 @@ buildPythonPackage rec {
     "test_plot_pair"
     # Array mismatch
     "test_plot_ts"
+    # The following two tests fail in a common venv-based setup.
+    # An issue has been opened upstream: https://github.com/arviz-devs/arviz/issues/2282
+    "test_plot_ppc_discrete"
+    "test_plot_ppc_discrete_save_animation"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/asana/default.nix b/pkgs/development/python-modules/asana/default.nix
index 410c8d6a24f1..f3b6787dd66b 100644
--- a/pkgs/development/python-modules/asana/default.nix
+++ b/pkgs/development/python-modules/asana/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "asana";
-  version = "3.2.1";
+  version = "4.0.11";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -18,8 +18,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "asana";
     repo = "python-asana";
-    rev = "refs/tags/v${version}";
-    hash = "sha256-hvAyKGoNkX3bs7Mz2h7SnOa5T6J88c0YiTR/L8fgfi8=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-B98X8ErmoMIpXu4KKvRGgtElPs/va2+UIR+ARUgafgo=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/asf-search/default.nix b/pkgs/development/python-modules/asf-search/default.nix
index 3fd043766778..a5177a6b7e18 100644
--- a/pkgs/development/python-modules/asf-search/default.nix
+++ b/pkgs/development/python-modules/asf-search/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "asf-search";
-  version = "6.3.1";
+  version = "6.6.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -26,7 +26,7 @@ buildPythonPackage rec {
     owner = "asfadmin";
     repo = "Discovery-asf_search";
     rev = "refs/tags/v${version}";
-    hash = "sha256-9mhb8PEpRdFjbPBZ/B8he/UcRSLryBQU0Dgjcii7LGY=";
+    hash = "sha256-w4xpCqNal0BHsmf1cL4k/DKzs/e9WQXTQNJNs8puJUU=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/asn1tools/default.nix b/pkgs/development/python-modules/asn1tools/default.nix
index 8bc58e992c86..89abcb152639 100644
--- a/pkgs/development/python-modules/asn1tools/default.nix
+++ b/pkgs/development/python-modules/asn1tools/default.nix
@@ -7,6 +7,7 @@
 , pyparsing
 , python
 , pythonOlder
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
@@ -25,14 +26,22 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     bitstruct
-    diskcache
-    prompt-toolkit
     pyparsing
   ];
 
-  checkPhase = ''
-    ${python.interpreter} setup.py test
-  '';
+  passthru.optional-depdendencies = {
+    shell = [
+      prompt-toolkit
+    ];
+    cache = [
+      diskcache
+    ];
+  };
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ] ++ lib.flatten (builtins.attrValues passthru.optional-depdendencies);
+
 
   pythonImportsCheck = [
     "asn1tools"
diff --git a/pkgs/development/python-modules/astroquery/default.nix b/pkgs/development/python-modules/astroquery/default.nix
index 7b5a24378dde..610238559a2c 100644
--- a/pkgs/development/python-modules/astroquery/default.nix
+++ b/pkgs/development/python-modules/astroquery/default.nix
@@ -53,6 +53,11 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
+  pytestFlagsArray = [
+    # DeprecationWarning: 'cgi' is deprecated and slated for removal in Python 3.13
+    "-W" "ignore::DeprecationWarning"
+  ];
+
   # Tests must be run in the build directory. The tests create files
   # in $HOME/.astropy so we need to set HOME to $TMPDIR.
   preCheck = ''
@@ -66,8 +71,6 @@ buildPythonPackage rec {
     description = "Functions and classes to access online data resources";
     homepage = "https://astroquery.readthedocs.io/";
     license = licenses.bsd3;
-    # Broken since a certain astropy update, due to API incompatibility
-    broken = true;
     maintainers = [ maintainers.smaret ];
   };
 }
diff --git a/pkgs/development/python-modules/asttokens/default.nix b/pkgs/development/python-modules/asttokens/default.nix
index 89c959293df3..452abd626e0b 100644
--- a/pkgs/development/python-modules/asttokens/default.nix
+++ b/pkgs/development/python-modules/asttokens/default.nix
@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "asttokens";
-  version = "2.2.1";
+  version = "2.4.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-RiIRCypvMLd+FHOv+ql+cRvC8H0/EISEIP8YmO2+lPM=";
+    hash = "sha256-LgFxuZGyyVmsxsSTGASSNoRKXaHWW6JnLEiAwciUg04=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/async-timeout/default.nix b/pkgs/development/python-modules/async-timeout/default.nix
index 55297bea9cbd..59c8b51fbb67 100644
--- a/pkgs/development/python-modules/async-timeout/default.nix
+++ b/pkgs/development/python-modules/async-timeout/default.nix
@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "async-timeout";
-  version = "4.0.2";
+  version = "4.0.3";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-IWPhZA3bUreoyA0KZ6CFh+XSRcycVTp0qEcFa8KXaxU=";
+    hash = "sha256-RkDZa+hNgtAu1Z6itxBaD3szq+hwNwPNCrC/h8QnUi8=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/atpublic/default.nix b/pkgs/development/python-modules/atpublic/default.nix
index d856aa544cb1..20fc37d45999 100644
--- a/pkgs/development/python-modules/atpublic/default.nix
+++ b/pkgs/development/python-modules/atpublic/default.nix
@@ -3,25 +3,25 @@
 , fetchPypi
 , pytestCheckHook
 , pythonOlder
-, pdm-pep517
+, pdm-backend
 , sybil
 , typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "atpublic";
-  version = "3.1.1";
+  version = "4.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-MJjuEtAQfMUAnWH06A5e3PrEzaK9qgRkSvdYJ8sSGxg=";
+    hash = "sha256-D0BDMhnhJO3xFcbDY4CMpvDhz6fRYNhrL7lHkwhtEpQ=";
   };
 
   nativeBuildInputs = [
-    pdm-pep517
+    pdm-backend
   ];
 
   propagatedBuildInputs = lib.optionals (pythonOlder "3.8") [
diff --git a/pkgs/development/python-modules/auth0-python/default.nix b/pkgs/development/python-modules/auth0-python/default.nix
index 06313ed12ce1..b40a680fb381 100644
--- a/pkgs/development/python-modules/auth0-python/default.nix
+++ b/pkgs/development/python-modules/auth0-python/default.nix
@@ -5,6 +5,8 @@
 , callee
 , fetchFromGitHub
 , mock
+, poetry-core
+, poetry-dynamic-versioning
 , pyjwt
 , pytestCheckHook
 , pythonOlder
@@ -14,7 +16,7 @@
 buildPythonPackage rec {
   pname = "auth0-python";
   version = "4.4.2";
-  format = "setuptools";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
@@ -25,6 +27,11 @@ buildPythonPackage rec {
     hash = "sha256-RBkAuZQx7mBxVCpo5PoBiEge8+yTmp0XpcnxCkOsM6U=";
   };
 
+  nativeBuildInputs = [
+    poetry-core
+    poetry-dynamic-versioning
+  ];
+
   propagatedBuildInputs = [
     requests
     pyjwt
diff --git a/pkgs/development/python-modules/autoflake/default.nix b/pkgs/development/python-modules/autoflake/default.nix
index 9446a6dc2b4c..0897abe77b84 100644
--- a/pkgs/development/python-modules/autoflake/default.nix
+++ b/pkgs/development/python-modules/autoflake/default.nix
@@ -9,12 +9,12 @@
 }:
 buildPythonPackage rec {
   pname = "autoflake";
-  version = "2.0.1";
+  version = "2.2.1";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-HOUgExt/OWkVJC/pHlciH01CQIUpu+Ouk62v7ShlkeA=";
+    hash = "sha256-Yre2RJppLDybDJFpGbvCFkjacoHoUGvPjT+CgOQx68E=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/autopep8/default.nix b/pkgs/development/python-modules/autopep8/default.nix
index b34a78351bd9..9a177d7b4936 100644
--- a/pkgs/development/python-modules/autopep8/default.nix
+++ b/pkgs/development/python-modules/autopep8/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "autopep8";
-  version = "2.0.2";
+  version = "2.0.4";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "hhatto";
     repo = "autopep8";
     rev = "refs/tags/v${version}";
-    hash = "sha256-+EZgo7xtYKMgpcntU5FtPrfikDDpnvGHhorhtoqDsvE=";
+    hash = "sha256-TuaDnZqn9mRUsoDJkj9JK4ztvzl9JTwAk8nghIkZBvw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/av/default.nix b/pkgs/development/python-modules/av/default.nix
index 64f12ed24a1a..b930fd80b99d 100644
--- a/pkgs/development/python-modules/av/default.nix
+++ b/pkgs/development/python-modules/av/default.nix
@@ -9,7 +9,7 @@
 , setuptools
 
 # runtime
-, ffmpeg-headless
+, ffmpeg_5-headless
 
 # tests
 , numpy
@@ -38,7 +38,7 @@ buildPythonPackage rec {
   ];
 
   buildInputs = [
-    ffmpeg-headless
+    ffmpeg_5-headless
   ];
 
   preCheck = ''
diff --git a/pkgs/development/python-modules/awkward-cpp/default.nix b/pkgs/development/python-modules/awkward-cpp/default.nix
index a8107fac2b84..16bae9a42597 100644
--- a/pkgs/development/python-modules/awkward-cpp/default.nix
+++ b/pkgs/development/python-modules/awkward-cpp/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "awkward-cpp";
-  version = "22";
+  version = "23";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-IWeWNvshz+NxX4ijIyaleRmThNstpKYplcMQUC1/6F8=";
+    hash = "sha256-c+Rg8+CMIvuDaeuME6ERyfMqeaLMfQHklnXdXQiSNt4=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/awkward/default.nix b/pkgs/development/python-modules/awkward/default.nix
index 81881d519392..f8fd32caa696 100644
--- a/pkgs/development/python-modules/awkward/default.nix
+++ b/pkgs/development/python-modules/awkward/default.nix
@@ -3,8 +3,10 @@
 , fetchPypi
 , pythonOlder
 , awkward-cpp
+, cupy
 , hatch-fancy-pypi-readme
 , hatchling
+, importlib-metadata
 , numba
 , numpy
 , packaging
@@ -15,14 +17,14 @@
 
 buildPythonPackage rec {
   pname = "awkward";
-  version = "2.3.1";
+  version = "2.4.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-NLROXEbh4MKvBFuj+4+Wa2u37P9vuQ0Ww8kK+CYWt5E=";
+    hash = "sha256-soMmJ2JXhoR7rmCjtb+5388WfwnDrEbILyMvJqdymro=";
   };
 
   nativeBuildInputs = [
@@ -34,13 +36,16 @@ buildPythonPackage rec {
     awkward-cpp
     numpy
     packaging
-  ]  ++ lib.optionals (pythonOlder "3.11") [
+  ] ++ lib.optionals (pythonOlder "3.11") [
     typing-extensions
+  ] ++ lib.optionals (pythonOlder "3.12") [
+    importlib-metadata
   ];
 
   dontUseCmakeConfigure = true;
 
   nativeCheckInputs = [
+    cupy
     pytestCheckHook
     numba
     setuptools
diff --git a/pkgs/development/python-modules/aws-adfs/default.nix b/pkgs/development/python-modules/aws-adfs/default.nix
index 3a32d82ec935..7dc2a217987f 100644
--- a/pkgs/development/python-modules/aws-adfs/default.nix
+++ b/pkgs/development/python-modules/aws-adfs/default.nix
@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "aws-adfs";
-  version = "2.8.1";
+  version = "2.8.2";
   pyproject = true;
 
   disabled = pythonOlder "3.7";
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     owner = "venth";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-tpCDP924lNSaPJggj3A94U2Ur+TgxTXtV660OyQJEeY=";
+    hash = "sha256-hMM7Z0s9t5vetgskiy7nb1W/kKCKHe0Q3kT2ngUVADA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/aws-sam-translator/default.nix b/pkgs/development/python-modules/aws-sam-translator/default.nix
index 7fe9fdac96eb..5a7b1af3e8f1 100644
--- a/pkgs/development/python-modules/aws-sam-translator/default.nix
+++ b/pkgs/development/python-modules/aws-sam-translator/default.nix
@@ -2,6 +2,7 @@
 , boto3
 , buildPythonPackage
 , fetchFromGitHub
+, fetchpatch
 , jsonschema
 , parameterized
 , pydantic
@@ -28,6 +29,13 @@ buildPythonPackage rec {
     hash = "sha256-uOfBR0bvLVyBcfSAkSqOx4KjmSYbfktpJlxKjipfj50=";
   };
 
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/aws/serverless-application-model/commit/e41b0f02204635a655100b68dd38220af32a2728.patch";
+      hash = "sha256-V6KXdXQUr9fvLzxI6sUMrSRnGX5SrAaDygcaQ87FaQ8=";
+    })
+  ];
+
   postPatch = ''
     substituteInPlace pytest.ini \
       --replace " --cov samtranslator --cov-report term-missing --cov-fail-under 95" ""
@@ -57,6 +65,26 @@ buildPythonPackage rec {
     sed -i '2ienv =\n\tAWS_DEFAULT_REGION=us-east-1' pytest.ini
   '';
 
+  disabledTests = [
+    # urllib3 2.0 compat
+    "test_plugin_accepts_different_sar_client"
+    "test_plugin_accepts_flags"
+    "test_plugin_accepts_parameters"
+    "test_plugin_default_values"
+    "test_plugin_invalid_configuration_raises_exception"
+    "test_plugin_must_setup_correct_name"
+    "test_must_process_applications"
+    "test_must_process_applications_validate"
+    "test_process_invalid_applications"
+    "test_process_invalid_applications_validate"
+    "test_resolve_intrinsics"
+    "test_sar_service_calls"
+    "test_sar_success_one_app"
+    "test_sar_throttling_doesnt_stop_processing"
+    "test_sleep_between_sar_checks"
+    "test_unexpected_sar_error_stops_processing"
+  ];
+
   meta = with lib; {
     description = "Python library to transform SAM templates into AWS CloudFormation templates";
     homepage = "https://github.com/awslabs/serverless-application-model";
diff --git a/pkgs/development/python-modules/aws-xray-sdk/default.nix b/pkgs/development/python-modules/aws-xray-sdk/default.nix
index 3be1c09b5fbe..e2fb2414a2c0 100644
--- a/pkgs/development/python-modules/aws-xray-sdk/default.nix
+++ b/pkgs/development/python-modules/aws-xray-sdk/default.nix
@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "aws-xray-sdk";
-  version = "2.11.0";
+  version = "2.12.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-eINfyEHwPlUIWPGKmXPquGGPR/ItL1nt8TBXj6VFqGc=";
+    hash = "sha256-KVr8I3BzqAlW19TyfDGDDty5qMzKnviqRJkLre8V5bc=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/awslambdaric/default.nix b/pkgs/development/python-modules/awslambdaric/default.nix
index d79b3448f212..1d89f2e93241 100644
--- a/pkgs/development/python-modules/awslambdaric/default.nix
+++ b/pkgs/development/python-modules/awslambdaric/default.nix
@@ -16,14 +16,14 @@
 
 buildPythonPackage rec {
   pname = "awslambdaric";
-  version = "2.0.0";
+  version = "2.0.7";
   disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "aws";
     repo = "aws-lambda-python-runtime-interface-client";
-    rev = version;
-    sha256 = "1amlaq119mk8fa3fxi3d6vgp83vcd81mbk53jzbixacklmcsp50k";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-9PgdLzeSafglguXksMetzopbDlBWlGDSSXiZHfuWgE8=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/awswrangler/default.nix b/pkgs/development/python-modules/awswrangler/default.nix
index 806016afbffc..65f5bcf36e94 100644
--- a/pkgs/development/python-modules/awswrangler/default.nix
+++ b/pkgs/development/python-modules/awswrangler/default.nix
@@ -24,7 +24,7 @@
 
 buildPythonPackage rec {
   pname = "awswrangler";
-  version = "3.3.0";
+  version = "3.4.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -33,7 +33,7 @@ buildPythonPackage rec {
     owner = "aws";
     repo = "aws-sdk-pandas";
     rev = "refs/tags/${version}";
-    hash = "sha256-Sb5yqbEqGmwhPoG21+uMnl8Jdn3Gc455guceQhAflWY=";
+    hash = "sha256-ZHEWG/A3lNwSw3MxguqjvgAOx5IHei43ku7GVJh8tLY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-cosmos/default.nix b/pkgs/development/python-modules/azure-cosmos/default.nix
index 9cbbd8e64b06..f41bc696d56f 100644
--- a/pkgs/development/python-modules/azure-cosmos/default.nix
+++ b/pkgs/development/python-modules/azure-cosmos/default.nix
@@ -6,12 +6,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "3.2.0";
+  version = "4.5.1";
   pname = "azure-cosmos";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4f77cc558fecffac04377ba758ac4e23f076dc1c54e2cf2515f85bc15cbde5c6";
+    sha256 = "sha256-xK2oOBMG7sQTwBvFCneOJk3D9Pr6nWlvnfhDYUjSrqg=";
   };
 
   propagatedBuildInputs = [ six requests ];
diff --git a/pkgs/development/python-modules/azure-mgmt-trafficmanager/default.nix b/pkgs/development/python-modules/azure-mgmt-trafficmanager/default.nix
index a0da387c627a..c5190b6d3368 100644
--- a/pkgs/development/python-modules/azure-mgmt-trafficmanager/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-trafficmanager/default.nix
@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-trafficmanager";
-  version = "1.0.0";
+  version = "1.1.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    hash = "sha256-R0F2HoA0bE7dTLPycTaOqYBj+ATQFeJFwv4EjtK1lqg=";
+    hash = "sha256-Nb8ZAr8VidYm41lx5aqgCeiECUZytHm3mM0buNTy/fk=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/bash_kernel/default.nix b/pkgs/development/python-modules/bash_kernel/default.nix
index 582e7c5dccf1..331b9c91707a 100644
--- a/pkgs/development/python-modules/bash_kernel/default.nix
+++ b/pkgs/development/python-modules/bash_kernel/default.nix
@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "bash_kernel";
-  version = "0.9.0";
-  format = "pyproject";
+  version = "0.9.1";
+  format = "flit";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-BCPwUS72+DplThQ5o2lxiJmjjyeUj+IbZlst8dvzp8c=";
+    sha256 = "sha256-AYPVPjYP+baEcQUqmiiagWIXMlFrA04njpcgtdFaFis=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/bbox/default.nix b/pkgs/development/python-modules/bbox/default.nix
index 88a019dda8e9..4f1d0cef7fd0 100644
--- a/pkgs/development/python-modules/bbox/default.nix
+++ b/pkgs/development/python-modules/bbox/default.nix
@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "bbox";
-  version = "0.9.2";
+  version = "0.9.4";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ucR7mg9eubEefjC7ratEgrb9h++a26z8KV38n3N2kcw=";
+    hash = "sha256-GGQhKkdwmrYPEhtldPY3WUInSniU/B40NZvt1gXEuzg=";
   };
 
   propagatedBuildInputs = [ pyquaternion numpy ];
diff --git a/pkgs/development/python-modules/beartype/default.nix b/pkgs/development/python-modules/beartype/default.nix
index 62dbfd059b11..42b3ea063de5 100644
--- a/pkgs/development/python-modules/beartype/default.nix
+++ b/pkgs/development/python-modules/beartype/default.nix
@@ -3,22 +3,24 @@
 , fetchPypi
 , pytestCheckHook
 , pythonOlder
+, typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "beartype";
-  version = "0.14.0";
+  version = "0.15.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-VG5ujc3aHW2fkG6k6xUYqgHJxfWkQOSVkXstr1PL1Zg=";
+    hash = "sha256-Kvao2KcmfM99Jx4aO9kIr7wCXSoJqlESNWfX17N0ON8=";
   };
 
   nativeCheckInputs = [
     pytestCheckHook
+    typing-extensions
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/bitcoinlib/default.nix b/pkgs/development/python-modules/bitcoinlib/default.nix
index 037ea8b5ebfe..3b1ead8d8962 100644
--- a/pkgs/development/python-modules/bitcoinlib/default.nix
+++ b/pkgs/development/python-modules/bitcoinlib/default.nix
@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "bitcoinlib";
-  version = "0.12.0";
+  version = "0.12.2";
 
   disabled = !isPy3k;
 
@@ -10,12 +10,12 @@ buildPythonPackage rec {
     owner = "petertodd";
     repo = "python-bitcoinlib";
     rev = "refs/tags/python-bitcoinlib-v${version}";
-    hash = "sha256-jguybrH86z6NWLaucQEYjvH2Gkoh3Aqh/PLZ6l8Qel4=";
+    hash = "sha256-jfd2Buy6GSCH0ZeccRREC1NmlS6Mq1qtNv/NLNJOsX0=";
   };
 
   postPatch = ''
     substituteInPlace bitcoin/core/key.py --replace \
-      "ctypes.util.find_library('ssl.35') or ctypes.util.find_library('ssl') or 'libeay32'" \
+      "ctypes.util.find_library('ssl.35') or ctypes.util.find_library('ssl') or ctypes.util.find_library('libeay32')" \
       "'${lib.getLib openssl}/lib/libssl${stdenv.hostPlatform.extensions.sharedLibrary}'"
   '';
 
diff --git a/pkgs/development/python-modules/bitstring/default.nix b/pkgs/development/python-modules/bitstring/default.nix
index a61a159a71ec..55a6094c131b 100644
--- a/pkgs/development/python-modules/bitstring/default.nix
+++ b/pkgs/development/python-modules/bitstring/default.nix
@@ -2,13 +2,14 @@
 , buildPythonPackage
 , fetchFromGitHub
 , pythonOlder
+, bitarray
 , setuptools
 , unittestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "bitstring";
-  version = "4.0.2";
+  version = "4.1.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -16,14 +17,18 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "scott-griffiths";
     repo = pname;
-    rev = "bitstring-${version}";
-    hash = "sha256-LghfDjf/Z1dEU0gjH1cqMb04ChnW+aGDjmN+RAhMWW8=";
+    rev = "refs/tags/bitstring-${version}";
+    hash = "sha256-e4OnXwEuXz5m8d2PZOL5zDw8iGEzUg8LLk+xs/eGleA=";
   };
 
   nativeBuildInputs = [
     setuptools
   ];
 
+  propagatedBuildInputs = [
+    bitarray
+  ];
+
   nativeCheckInputs = [ unittestCheckHook ];
 
   pythonImportsCheck = [ "bitstring" ];
diff --git a/pkgs/development/python-modules/blinker/default.nix b/pkgs/development/python-modules/blinker/default.nix
index 88bd08c92554..9864bbae3c61 100644
--- a/pkgs/development/python-modules/blinker/default.nix
+++ b/pkgs/development/python-modules/blinker/default.nix
@@ -2,24 +2,37 @@
 , buildPythonPackage
 , fetchPypi
 , pytestCheckHook
+, pytest-asyncio
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "blinker";
-  version = "1.5";
+  version = "1.6.2";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-kj5eL2nBVfLMQtr7vXDhbj/eJNLUqiq3L744YjiJJGI=";
+    hash = "sha256-Sv095m7zqfgGdVn7ehy+VVwX3L4VlxsF0bYlw+er4hM=";
   };
 
-  nativeCheckInputs = [ pytestCheckHook ];
+  nativeBuildInputs = [
+    setuptools
+  ];
 
-  pythonImportsCheck = [ "blinker" ];
+  pythonImportsCheck = [
+    "blinker"
+  ];
+
+  nativeCheckInputs = [
+    pytest-asyncio
+    pytestCheckHook
+  ];
 
   meta = with lib; {
-    homepage = "https://pythonhosted.org/blinker/";
-    description = "Fast, simple object-to-object and broadcast signaling";
+    changelog = "https://github.com/pallets-eco/blinker/releases/tag/${version}";
+    description = "Fast Python in-process signal/event dispatching system";
+    homepage = "https://github.com/pallets-eco/blinker/";
     license = licenses.mit;
     maintainers = with maintainers; [ ];
   };
diff --git a/pkgs/development/python-modules/blinkpy/default.nix b/pkgs/development/python-modules/blinkpy/default.nix
index 51e5e3b0f472..619e181e8d56 100644
--- a/pkgs/development/python-modules/blinkpy/default.nix
+++ b/pkgs/development/python-modules/blinkpy/default.nix
@@ -1,6 +1,8 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, aiofiles
+, aiohttp
 , pytestCheckHook
 , python-dateutil
 , python-slugify
@@ -12,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "blinkpy";
-  version = "0.21.0";
+  version = "0.22.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
@@ -21,10 +23,12 @@ buildPythonPackage rec {
     owner = "fronzbot";
     repo = "blinkpy";
     rev = "refs/tags/v${version}";
-    hash = "sha256-0sEZlnS6CJj8nMyjtSFZRALRKdmY0Uu5N6sozPiDG6w=";
+    hash = "sha256-r8kf5L6bvtivqd9dSi8om1wIi8IHmipKFckNMPT515I=";
   };
 
   propagatedBuildInputs = [
+    aiofiles
+    aiohttp
     python-dateutil
     python-slugify
     requests
diff --git a/pkgs/development/python-modules/blosc2/default.nix b/pkgs/development/python-modules/blosc2/default.nix
index 80cec5ca1ec3..a4c1db3d7b70 100644
--- a/pkgs/development/python-modules/blosc2/default.nix
+++ b/pkgs/development/python-modules/blosc2/default.nix
@@ -26,7 +26,7 @@
 
 buildPythonPackage rec {
   pname = "blosc2";
-  version = "2.1.1";
+  version = "2.2.7";
   format = "pyproject";
 
   src = fetchFromGitHub {
@@ -34,7 +34,7 @@ buildPythonPackage rec {
     repo = "python-blosc2";
     rev = "refs/tags/v${version}";
     fetchSubmodules = true;
-    hash = "sha256-nbPMLkTye0/Q05ubE35LssN677sUIQErPTxjAtSuGgI=";
+    hash = "sha256-5a94Zm6sYl/nSfkcFbKG7PkyXwLB6bAoIvfaq0yVGHo=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/blspy/default.nix b/pkgs/development/python-modules/blspy/default.nix
index 41d8c13dc56e..929f1c90b7ce 100644
--- a/pkgs/development/python-modules/blspy/default.nix
+++ b/pkgs/development/python-modules/blspy/default.nix
@@ -48,6 +48,13 @@ buildPythonPackage rec {
     })
   ];
 
+  # ImportError: cannot import name 'setuptools' from 'setuptools'
+  # this is resolved in the next release, v2
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "from setuptools import Extension, setup, setuptools" "from setuptools import Extension, setup"
+  '';
+
   nativeBuildInputs = [ cmake setuptools-scm ];
 
   buildInputs = [ boost gmp.static pybind11 ];
diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix
index 1693f2258bcc..3dac327a48be 100644
--- a/pkgs/development/python-modules/botocore/default.nix
+++ b/pkgs/development/python-modules/botocore/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.31.9"; # N.B: if you change this, change boto3 and awscli to a matching version
+  version = "1.31.48"; # N.B: if you change this, change boto3 and awscli to a matching version
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-vYSdOslfF4E4Xtgx11OgSj7IcKWdZZgXWq7dcdwrr18=";
+    hash = "sha256-btFvZqpu1gcP7SbWl2TLFMd1nkzAscGRKDzEiwXWXek=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/bottle/default.nix b/pkgs/development/python-modules/bottle/default.nix
index 7a97b9990230..e64883140316 100644
--- a/pkgs/development/python-modules/bottle/default.nix
+++ b/pkgs/development/python-modules/bottle/default.nix
@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "bottle";
-  version = "0.12.24";
+  version = "0.12.25";
 
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-JIASGnPoc4CYm3fjK9IJLRkOfqfXHm8bj3r36rnVTqM=";
+    hash = "sha256-4anJSXCubXELP7RSYpTf64byy0qB7/OkuY3ED7Dl4CE=";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/bottombar/default.nix b/pkgs/development/python-modules/bottombar/default.nix
index e3e9bb38cc11..ab7a9b06d64f 100644
--- a/pkgs/development/python-modules/bottombar/default.nix
+++ b/pkgs/development/python-modules/bottombar/default.nix
@@ -6,14 +6,14 @@
 
 buildPythonPackage rec {
   pname = "bottombar";
-  version = "1.0";
+  version = "2.1";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "evalf";
     repo = "bottombar";
     rev = "refs/tags/v${version}";
-    hash = "sha256-/3m34HcYmmEf92H3938dYV1Q6k44KaCb9TDx9nDNPnM=";
+    hash = "sha256-W+Cbcgb664nVT/nsFdDruT688JWG2NZnF5hDDezTgnw=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/bqplot/default.nix b/pkgs/development/python-modules/bqplot/default.nix
index 5695be669bbc..a1737d339a3d 100644
--- a/pkgs/development/python-modules/bqplot/default.nix
+++ b/pkgs/development/python-modules/bqplot/default.nix
@@ -14,14 +14,14 @@
 
 buildPythonPackage rec {
   pname = "bqplot";
-  version = "0.12.39";
+  version = "0.12.40";
 
   format = "pyproject";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-FNjeb5pNGUW76mwTIOpNHJMlb3JoN3T24AINzFefPdI=";
+    hash = "sha256-7L/ovwTwRFju5G3Cwvgla0wVIdRvlEOOm+GTieT4b7k=";
   };
 
   # upstream seems in flux for 0.13 release. they seem to want to migrate from
diff --git a/pkgs/development/python-modules/bqscales/default.nix b/pkgs/development/python-modules/bqscales/default.nix
index 8b0ebb610ad9..c8fa7879bd75 100644
--- a/pkgs/development/python-modules/bqscales/default.nix
+++ b/pkgs/development/python-modules/bqscales/default.nix
@@ -3,6 +3,8 @@
 , pythonOlder
 , fetchPypi
 , hatchling
+, hatch-jupyter-builder
+, jupyterlab
 , jupyter-packaging
 , ipywidgets
 , numpy
@@ -12,13 +14,13 @@
 
 buildPythonPackage rec {
   pname = "bqscales";
-  version = "0.3.1";
+  version = "0.3.3";
   format = "pyproject";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-C+/GLpqYpePngbn5W0MwvpdmVgFZF7aGHyKMgO5XM90=";
+    hash = "sha256-SlnNw4dWOzRedwIN3kCyl95qVqkY92QGOMS3Eyoqk0I=";
   };
 
   # We relax dependencies here instead of pulling in a patch because upstream
@@ -35,7 +37,9 @@ buildPythonPackage rec {
   '';
 
   nativeBuildInputs = [
+    hatch-jupyter-builder
     hatchling
+    jupyterlab
     jupyter-packaging
   ];
 
diff --git a/pkgs/development/python-modules/breathe/default.nix b/pkgs/development/python-modules/breathe/default.nix
index cfb919682e44..81068d4c0796 100644
--- a/pkgs/development/python-modules/breathe/default.nix
+++ b/pkgs/development/python-modules/breathe/default.nix
@@ -2,7 +2,6 @@
 , buildPythonPackage
 , docutils
 , fetchFromGitHub
-, fetchpatch
 , pytestCheckHook
 , pythonOlder
 , sphinx
@@ -10,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "breathe";
-  version = "4.34.0";
+  version = "4.35.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -19,16 +18,9 @@ buildPythonPackage rec {
     owner = "michaeljones";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-OOc3XQjqQa0cVpA+/HHco+koL+0whUm5qC7x3xiEdwQ=";
+    hash = "sha256-LJXvtScyWRL8zfj877bJ4xuIbLV9IN3Sn9KPUTLMjMI=";
   };
 
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/breathe-doc/breathe/commit/de3504c81c7cefc87c8229743f93232ca00a685d.patch";
-      hash = "sha256-UGld5j0F/hnTuS7KUFvgQL52xCUdaJ3/NeuEuHhpCxI=";
-    })
-  ];
-
   propagatedBuildInputs = [
     docutils
     sphinx
diff --git a/pkgs/development/python-modules/brian2/default.nix b/pkgs/development/python-modules/brian2/default.nix
index 6ebd89a7b346..2b3bcbff5076 100644
--- a/pkgs/development/python-modules/brian2/default.nix
+++ b/pkgs/development/python-modules/brian2/default.nix
@@ -14,12 +14,12 @@
 
 buildPythonPackage rec {
   pname = "brian2";
-  version = "2.5.1";
+  version = "2.5.4";
 
   src = fetchPypi {
     pname = "Brian2";
     inherit version;
-    hash = "sha256-x1EcS7PFCsjPYsq3Lt87SJRW4J5DE/OfdFs3NuyHiLw=";
+    hash = "sha256-XMXSOwcH8fLgzXCcT+grjYxhBdtF4H/Vr+S7J4GYZSw=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/brotli/default.nix b/pkgs/development/python-modules/brotli/default.nix
index b70302fe9ea6..91e907c3af33 100644
--- a/pkgs/development/python-modules/brotli/default.nix
+++ b/pkgs/development/python-modules/brotli/default.nix
@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "brotli";
-  version = "1.0.9";
+  version = "1.1.0";
 
   src = fetchFromGitHub {
     owner = "google";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-tFnXSXv8t3l3HX6GwWLhEtgpqz0c7Yom5U3k47pWM7o=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-MvceRcle2dSkkucC2PlsCizsIf8iv95d8Xjqew266wc=";
     # .gitattributes is not correct or GitHub does not parse it correct and the archive is missing the test data
     forceFetchGit = true;
   };
diff --git a/pkgs/development/python-modules/brotlicffi/default.nix b/pkgs/development/python-modules/brotlicffi/default.nix
index 5e0600d343a8..fd30ab86c07c 100644
--- a/pkgs/development/python-modules/brotlicffi/default.nix
+++ b/pkgs/development/python-modules/brotlicffi/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "brotlicffi";
-  version = "1.0.9.2";
-  disabled = pythonOlder "3.6";
+  version = "1.1.0.0";
+  disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "python-hyper";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0qx7an7772brmx1rbbrqzqnkqqvicc70mx740nl31kzzyv4jjs00";
+    sha256 = "sha256-oW4y1WBJ7+4XwNwwSSR0qUqN03cZYXUYQ6EAwce9dzI=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/build/default.nix b/pkgs/development/python-modules/build/default.nix
index f86f47e2bd85..4b06298f1d26 100644
--- a/pkgs/development/python-modules/build/default.nix
+++ b/pkgs/development/python-modules/build/default.nix
@@ -13,22 +13,22 @@
 , pytestCheckHook
 , pythonOlder
 , setuptools
-, toml
 , tomli
+, wheel
 }:
 
 buildPythonPackage rec {
   pname = "build";
-  version = "0.10.0";
+  version = "1.0.3";
   format = "pyproject";
 
-  disabled = pythonOlder "3.6";
+  disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "pypa";
-    repo = pname;
-    rev = version;
-    hash = "sha256-kXFrfTb7+68EV+gSENL81IFSR+ue7Fl6R2gsuFFBJhI=";
+    repo = "build";
+    rev = "refs/tags/${version}";
+    hash = "sha256-SGWpm+AGIfqKMpDfmz2aMYmcs+XVREbHIXSuU4R7U/k=";
   };
 
   nativeBuildInputs = [
@@ -49,7 +49,7 @@ buildPythonPackage rec {
   passthru.tests = {
     pytest = buildPythonPackage {
       pname = "${pname}-pytest";
-      inherit version;
+      inherit src version;
       format = "other";
 
       dontBuild = true;
@@ -63,7 +63,7 @@ buildPythonPackage rec {
         pytest-xdist
         pytestCheckHook
         setuptools
-        toml
+        wheel
       ];
 
       pytestFlagsArray = [
diff --git a/pkgs/development/python-modules/bytewax/default.nix b/pkgs/development/python-modules/bytewax/default.nix
index 61e6b3142fb9..c27d756070de 100644
--- a/pkgs/development/python-modules/bytewax/default.nix
+++ b/pkgs/development/python-modules/bytewax/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "bytewax";
-  version = "0.16.2";
+  version = "0.17.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     owner = "bytewax";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-PHjKEZMNhtLliOSGt4XHQFDm8Rc4TejQUVSqFN6Au38=";
+    hash = "sha256-Cv2bTgs3XfYOcHK628/RgGol7S6E4WfHb7gHXXjBhig=";
   };
 
   env = {
diff --git a/pkgs/development/python-modules/castepxbin/default.nix b/pkgs/development/python-modules/castepxbin/default.nix
index b02cac817fe2..007a9543d6f1 100644
--- a/pkgs/development/python-modules/castepxbin/default.nix
+++ b/pkgs/development/python-modules/castepxbin/default.nix
@@ -19,7 +19,7 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "zhubonan";
     repo = "castepxbin";
-    rev = "v${version}";
+    rev = "refs/tags/v${version}";
     hash = "sha256-6kumVnm4PLRxuKO6Uz0iHzfYuu21hFC7EPRsc3S1kxE=";
   };
 
diff --git a/pkgs/development/python-modules/catppuccin/default.nix b/pkgs/development/python-modules/catppuccin/default.nix
index 5a53233fff87..c938b389c28a 100644
--- a/pkgs/development/python-modules/catppuccin/default.nix
+++ b/pkgs/development/python-modules/catppuccin/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "catppuccin";
-  version = "1.1.1";
+  version = "1.3.2";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-mHNuV3yIuFL2cixDOr+//+/b9iD2fN82cfLzZkegxKc=";
+    hash = "sha256-iRQF9U6QvbyOSdp0OALc/Efl4IL1w17WGOZRbhzlqGA=";
   };
 
   propagatedBuildInputs = [ pygments ];
diff --git a/pkgs/development/python-modules/cepa/default.nix b/pkgs/development/python-modules/cepa/default.nix
index 708decb2964f..67c45a26665b 100644
--- a/pkgs/development/python-modules/cepa/default.nix
+++ b/pkgs/development/python-modules/cepa/default.nix
@@ -1,4 +1,10 @@
-{ lib, buildPythonPackage, fetchPypi, python, mock }:
+{ lib
+, buildPythonPackage
+, fetchpatch
+, fetchPypi
+, python
+, mock
+}:
 
 buildPythonPackage rec {
   pname = "cepa";
@@ -9,6 +15,14 @@ buildPythonPackage rec {
     hash = "sha256-P7xwGsP8ic1/abxYptDXNbAU+kC2Hiwu/Tge0g21ipY=";
   };
 
+  patches = [
+    (fetchpatch {
+      name = "python-3.11-compatibility.patch";
+      url = "https://github.com/onionshare/cepa/commit/0bf9aee7151e65594c532826bb04636e1d80fb6f.patch";
+      hash = "sha256-roSt9N5OvnOOxKZUee86zGXt0AsZCcbBdV2cLz1MB2k=";
+    })
+  ];
+
   postPatch = ''
     rm test/unit/installation.py
     sed -i "/test.unit.installation/d" test/settings.cfg
diff --git a/pkgs/development/python-modules/certifi/default.nix b/pkgs/development/python-modules/certifi/default.nix
index 7931432bd5e1..8a2fd3bb88cf 100644
--- a/pkgs/development/python-modules/certifi/default.nix
+++ b/pkgs/development/python-modules/certifi/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "certifi";
-  version = "2023.05.07";
+  version = "2023.07.22";
 
   disabled = pythonOlder "3.6";
 
@@ -16,7 +16,7 @@ buildPythonPackage rec {
     owner = pname;
     repo = "python-certifi";
     rev = version;
-    hash = "sha256-KXm0CtuZJL9VgFeY+DV0rdjaKqPQCqcoGPCkeGieTX8=";
+    hash = "sha256-V3bptJDNMGXlCMg6GHj792IrjfsG9+F/UpQKxeM0QOc=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/cfn-lint/default.nix b/pkgs/development/python-modules/cfn-lint/default.nix
index ed5377d9783a..f52bf2f667ae 100644
--- a/pkgs/development/python-modules/cfn-lint/default.nix
+++ b/pkgs/development/python-modules/cfn-lint/default.nix
@@ -20,7 +20,7 @@
 
 buildPythonPackage rec {
   pname = "cfn-lint";
-  version = "0.79.6";
+  version = "0.79.11";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -29,7 +29,7 @@ buildPythonPackage rec {
     owner = "aws-cloudformation";
     repo = "cfn-python-lint";
     rev = "refs/tags/v${version}";
-    hash = "sha256-5Lb8dA8HqDdEO/Ehv5y/JlP+te46mzrTw/kNHBb9l38=";
+    hash = "sha256-dVLKMoZzP2q3bejEIslgpQgkPJOJUeEsXyyk8HRP6h0=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/chardet/default.nix b/pkgs/development/python-modules/chardet/default.nix
index 69353dcaec28..7c78de37d36d 100644
--- a/pkgs/development/python-modules/chardet/default.nix
+++ b/pkgs/development/python-modules/chardet/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "chardet";
-  version = "5.1.0";
+  version = "5.2.0";
   format = "pyproject";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-DWJxK5VrwVT4X7CiZuKjxZE8KWfgA0hwGzJBHW3vMeU=";
+    hash = "sha256-Gztv9HmoxBS8P6LAhSmVaVxKAm3NbQYzst0JLKOcHPc=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/charset-normalizer/default.nix b/pkgs/development/python-modules/charset-normalizer/default.nix
index d567c41dbe6f..c2856a49060f 100644
--- a/pkgs/development/python-modules/charset-normalizer/default.nix
+++ b/pkgs/development/python-modules/charset-normalizer/default.nix
@@ -1,17 +1,15 @@
 { lib
+, aiohttp
 , buildPythonPackage
 , fetchFromGitHub
 , pytestCheckHook
 , pythonOlder
-
-  # popular downstream dependencies
-, aiohttp
 , requests
 }:
 
 buildPythonPackage rec {
   pname = "charset-normalizer";
-  version = "3.0.1";
+  version = "3.2.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.5";
@@ -20,18 +18,18 @@ buildPythonPackage rec {
     owner = "Ousret";
     repo = "charset_normalizer";
     rev = "refs/tags/${version}";
-    hash = "sha256-2kXs6ZdemA6taV4aa9xBKLmhbSgpybjg3Z61EUFabrk=";
+    hash = "sha256-CfL5rlrwJs9453z+1xPUzs1B3OyjFBaU6klzY7gJCzA=";
   };
 
-  nativeCheckInputs = [
-    pytestCheckHook
-  ];
-
   postPatch = ''
     substituteInPlace setup.cfg \
       --replace " --cov=charset_normalizer --cov-report=term-missing" ""
   '';
 
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
   pythonImportsCheck = [
     "charset_normalizer"
   ];
@@ -41,6 +39,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Python module for encoding and language detection";
     homepage = "https://charset-normalizer.readthedocs.io/";
+    changelog = "https://github.com/Ousret/charset_normalizer/blob/${version}/CHANGELOG.md";
     license = licenses.mit;
     maintainers = with maintainers; [ fab ];
   };
diff --git a/pkgs/development/python-modules/cheroot/default.nix b/pkgs/development/python-modules/cheroot/default.nix
index 11ce178e6906..679c5464b8f5 100644
--- a/pkgs/development/python-modules/cheroot/default.nix
+++ b/pkgs/development/python-modules/cheroot/default.nix
@@ -20,13 +20,13 @@
 
 buildPythonPackage rec {
   pname = "cheroot";
-  version = "9.0.0";
+  version = "10.0.0";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-PUetnuGey+wUS0dYOZA2aS/b9npAuW7vH7FFQ2ez0zg=";
+    hash = "sha256-WcShh3/vmWmzw8CAyqrzd+J4CRlDeFP8DTKp30CzEfA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/chia-rs/default.nix b/pkgs/development/python-modules/chia-rs/default.nix
index b8ce9ce755bc..7afec2e1a426 100644
--- a/pkgs/development/python-modules/chia-rs/default.nix
+++ b/pkgs/development/python-modules/chia-rs/default.nix
@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "chia-rs";
-  version = "0.2.0";
+  version = "0.2.10";
 
   src = fetchFromGitHub {
     owner = "chia-network";
     repo = "chia_rs";
-    rev = version;
-    hash = "sha256-kjURkzynrrb5iD5s77Q3nETt71SCGGazm/2lt9HS5JU=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-MFVWdpfvmvGfWIuVdrigGucP52/dB4xCO4Pn1RvUJnM=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/circuitbreaker/default.nix b/pkgs/development/python-modules/circuitbreaker/default.nix
index 05fce26d6e65..9218d82847cc 100644
--- a/pkgs/development/python-modules/circuitbreaker/default.nix
+++ b/pkgs/development/python-modules/circuitbreaker/default.nix
@@ -1,14 +1,15 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, mock
 , pytestCheckHook
+, pytest-asyncio
+, pytest-mock
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "circuitbreaker";
-  version = "1.4.0";
+  version = "2.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
@@ -17,12 +18,13 @@ buildPythonPackage rec {
     owner = "fabfuel";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-l0ASt9CQmgJmWpRrghElbff/gaNOmxNh+Wj0C0p4jE0=";
+    hash = "sha256-jaDCMGCZZu3STluYeHDNgdEPf2DNq7bXJ0LPV3JZdk0=";
   };
 
   nativeCheckInputs = [
-    mock
     pytestCheckHook
+    pytest-asyncio
+    pytest-mock
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/cirq-core/default.nix b/pkgs/development/python-modules/cirq-core/default.nix
index bc3a92fe4ac5..fe6a04480f66 100644
--- a/pkgs/development/python-modules/cirq-core/default.nix
+++ b/pkgs/development/python-modules/cirq-core/default.nix
@@ -48,7 +48,7 @@ buildPythonPackage rec {
   postPatch = ''
     substituteInPlace requirements.txt \
       --replace "matplotlib~=3.0" "matplotlib"
-  '';
+   '';
 
   propagatedBuildInputs = [
     duet
diff --git a/pkgs/development/python-modules/cleanlab/default.nix b/pkgs/development/python-modules/cleanlab/default.nix
index 0ac79e306c17..f1de682c40b5 100644
--- a/pkgs/development/python-modules/cleanlab/default.nix
+++ b/pkgs/development/python-modules/cleanlab/default.nix
@@ -16,7 +16,7 @@
 }:
 let
   pname = "cleanlab";
-  version = "2.4.0";
+  version = "2.5.0";
 in
 buildPythonPackage {
   inherit pname version;
@@ -27,8 +27,8 @@ buildPythonPackage {
   src = fetchFromGitHub {
     owner = "cleanlab";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-XFrjjBJA0OQEAspnQQiSIW4td0USJDXTp9C/91mobp8=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-5XQQVrhjpvjwtFM79DqttObmw/GQLkMQVXb5jhiC8e0=";
   };
 
   # postPatch = ''
diff --git a/pkgs/development/python-modules/click-odoo-contrib/default.nix b/pkgs/development/python-modules/click-odoo-contrib/default.nix
index b0ddaef004b9..ced0f6678407 100644
--- a/pkgs/development/python-modules/click-odoo-contrib/default.nix
+++ b/pkgs/development/python-modules/click-odoo-contrib/default.nix
@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "click-odoo-contrib";
-  version = "1.16.1";
+  version = "1.17.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-VFoS/lOw/jbJNj9xfgZHKzR6JDTwnlCAItq4mZ3RA6I=";
+    hash = "sha256-my6dWmAqvelihtB9SzFje01dZenkkNneKqcgwKtbOuA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/click/default.nix b/pkgs/development/python-modules/click/default.nix
index 6d748af8b5a2..8569eede0bbb 100644
--- a/pkgs/development/python-modules/click/default.nix
+++ b/pkgs/development/python-modules/click/default.nix
@@ -1,7 +1,7 @@
 { lib
 , buildPythonPackage
 , pythonOlder
-, fetchPypi
+, fetchFromGitHub
 , importlib-metadata
 , pytestCheckHook
 
@@ -15,12 +15,16 @@
 
 buildPythonPackage rec {
   pname = "click";
-  version = "8.1.6";
+  version = "8.1.7";
+  format = "setuptools";
+
   disabled = pythonOlder "3.7";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-SO6EmVGRlSegRb/jv3uqipWcQjE04aW5jAXCC6daHL0=";
+  src = fetchFromGitHub {
+    owner = "pallets";
+    repo = "click";
+    rev = "refs/tags/${version}";
+    hash = "sha256-8YqIKRyw5MegnRwAO7YTCZateEFQFTH2PHpE8gTPTow=";
   };
 
   propagatedBuildInputs = lib.optionals (pythonOlder "3.8") [
diff --git a/pkgs/development/python-modules/clickhouse-cli/default.nix b/pkgs/development/python-modules/clickhouse-cli/default.nix
index 9e986383dc57..3c807716e03d 100644
--- a/pkgs/development/python-modules/clickhouse-cli/default.nix
+++ b/pkgs/development/python-modules/clickhouse-cli/default.nix
@@ -10,11 +10,12 @@
 
 buildPythonPackage rec {
   pname = "clickhouse-cli";
-  version = "0.3.8";
+  version = "0.3.9";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-pa3vkIyNblS1LOwBReTqg8JAR2Ii32a2QIHWjau0uZE=";
+    hash = "sha256-gkgLAedUtzGv/4P+D56M2Pb5YecyqyVYp06ST62sjdY=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/clickhouse-connect/default.nix b/pkgs/development/python-modules/clickhouse-connect/default.nix
index e2a2915fe38b..1d693b3629f3 100644
--- a/pkgs/development/python-modules/clickhouse-connect/default.nix
+++ b/pkgs/development/python-modules/clickhouse-connect/default.nix
@@ -23,7 +23,7 @@
 }:
 buildPythonPackage rec {
   pname = "clickhouse-connect";
-  version = "0.6.8";
+  version = "0.6.11";
 
   format = "setuptools";
 
@@ -32,8 +32,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     repo = "clickhouse-connect";
     owner = "ClickHouse";
-    rev = "v${version}";
-    hash = "sha256-T1vUXhOngPvA4wrg5jVzIiqj0B0gEnk/BS5OdopHgkA=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-1ItHRbfV8tSH5h0f+/bXIBIWfAxh4Umxqm4N4MT7oek=";
   };
 
   nativeBuildInputs = [ cython_3 ];
diff --git a/pkgs/development/python-modules/cliff/default.nix b/pkgs/development/python-modules/cliff/default.nix
index f6feaaf39562..978c1c3f62f8 100644
--- a/pkgs/development/python-modules/cliff/default.nix
+++ b/pkgs/development/python-modules/cliff/default.nix
@@ -17,11 +17,11 @@
 
 buildPythonPackage rec {
   pname = "cliff";
-  version = "4.2.0";
+  version = "4.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-l/wx6TVS477GZL6dVa1/kNwqtCqtjfKaW5hbZEybjPI=";
+    hash = "sha256-/FtuvI+4FTMncLJIXuNsCXU5N8N8zk8yJ83U4Qsz6sw=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/cohere/default.nix b/pkgs/development/python-modules/cohere/default.nix
index 29ec01f23823..0966ba8ae28c 100644
--- a/pkgs/development/python-modules/cohere/default.nix
+++ b/pkgs/development/python-modules/cohere/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "cohere";
-  version = "4.21";
+  version = "4.26.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-9hFDj0Cd/F1aChU6WFNJ9agLFpxxArWZTZmZ7PhECGY=";
+    hash = "sha256-kiU5VooOWhqnjdhSHAIGV+D4pm9Qupz2oo0TZz9ASY8=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/colored/default.nix b/pkgs/development/python-modules/colored/default.nix
index 1a8c55dfde09..af696f384f15 100644
--- a/pkgs/development/python-modules/colored/default.nix
+++ b/pkgs/development/python-modules/colored/default.nix
@@ -1,24 +1,33 @@
 { lib
 , buildPythonPackage
-, fetchPypi
-, nose
+, fetchFromGitLab
+, flit-core
+, unittestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "colored";
-  version = "1.4.4";
-  format = "setuptools";
+  version = "2.2.3";
+  format = "pyproject";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-BP9NTdUUJ0/juZohu1L7lvJojAHpP7p77zciHny1bOA=";
+  src = fetchFromGitLab {
+    owner = "dslackw";
+    repo = "colored";
+    rev = "refs/tags/${version}";
+    hash = "sha256-4APFAIN+cmPPd6qbqVC9iU4YntNEjoPbJXZywG1hsBY=";
   };
 
-  nativeCheckInputs = [ nose ];
+  nativeBuildInputs = [
+    flit-core
+  ];
+
+  nativeCheckInputs = [
+    unittestCheckHook
+  ];
 
-  checkPhase = ''
-    nosetests
-  '';
+  unittestFlagsArray = [
+    "unittests"
+  ];
 
   pythonImportsCheck = [
     "colored"
diff --git a/pkgs/development/python-modules/comm/default.nix b/pkgs/development/python-modules/comm/default.nix
index 2f42ef87e928..627c1630489d 100644
--- a/pkgs/development/python-modules/comm/default.nix
+++ b/pkgs/development/python-modules/comm/default.nix
@@ -8,7 +8,7 @@
 
 let
   pname = "comm";
-  version = "0.1.3";
+  version = "0.1.4";
 in
 buildPythonPackage {
   inherit pname version;
@@ -18,7 +18,7 @@ buildPythonPackage {
     owner = "ipython";
     repo = "comm";
     rev = "refs/tags/v${version}";
-    hash = "sha256-5IUE2g00GT231hjuM7mLPst0QTk2Y+Re302FRDq65C8=";
+    hash = "sha256-6GvAyiTm+zQ5sSynuJhAg50PaMTY9EFqVVsD3K2wTkY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/compreffor/default.nix b/pkgs/development/python-modules/compreffor/default.nix
index 0b5e684fdf91..f587a2963800 100644
--- a/pkgs/development/python-modules/compreffor/default.nix
+++ b/pkgs/development/python-modules/compreffor/default.nix
@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "compreffor";
-  version = "0.5.4";
+  version = "0.5.5";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-MGulQEUGPrQ30T3VYzwRRlvzvWkFqNzqsNzAjtjX9xU=";
+    hash = "sha256-9NMmIJC8Q4hRC/H2S7OrgoWSQ9SRIPHxHvZpPrPCvHo=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/configparser/default.nix b/pkgs/development/python-modules/configparser/default.nix
index b703e5de599b..9dc6d16097a2 100644
--- a/pkgs/development/python-modules/configparser/default.nix
+++ b/pkgs/development/python-modules/configparser/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "configparser";
-  version = "5.3.0";
+  version = "6.0.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-i+JngktUHAmwjbEkkX9Iq1JabD6DcBHzEweBoiTFcJA=";
+    hash = "sha256-7JFKseVsZy3h9cNIOWTmj3GzTkV5BLe3bga5Iq7AZ6g=";
   };
 
   nativeBuildInputs = [ setuptools-scm ];
@@ -18,6 +18,12 @@ buildPythonPackage rec {
     export LC_ALL=${if stdenv.isDarwin then "en_US" else "C"}.UTF-8
   '';
 
+  preCheck = ''
+    # avoid FileNotFoundError
+    # FileNotFoundError: [Errno 2] No such file or directory: 'cfgparser.3'
+    cd tests
+  '';
+
   meta = with lib; {
     description = "Updated configparser from Python 3.7 for Python 2.6+.";
     homepage = "https://github.com/jaraco/configparser";
diff --git a/pkgs/development/python-modules/contourpy/default.nix b/pkgs/development/python-modules/contourpy/default.nix
index dfefc1b4486e..f5af82e55ff3 100644
--- a/pkgs/development/python-modules/contourpy/default.nix
+++ b/pkgs/development/python-modules/contourpy/default.nix
@@ -4,8 +4,10 @@
 , pythonOlder
 
 # build
+, meson
+, meson-python
+, ninja
 , pybind11
-, setuptools
 
 # propagates
 , numpy
@@ -23,7 +25,7 @@
 
 let countourpy = buildPythonPackage rec {
   pname = "contourpy";
-  version = "1.0.7";
+  version = "1.1.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -32,12 +34,14 @@ let countourpy = buildPythonPackage rec {
     owner = "contourpy";
     repo = "contourpy";
     rev = "refs/tags/v${version}";
-    hash = "sha256-n04b9yUoUMH2H7t8um/8h5XaL3hzY/uNMYmOKTVKEPA=";
+    hash = "sha256-7M+5HMDqQI4UgVfW/MXsVyz/yM6wjTcJEdw7vPvzuNY=";
   };
 
   nativeBuildInputs = [
+    meson
+    meson-python
+    ninja
     pybind11
-    setuptools
   ];
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/correctionlib/default.nix b/pkgs/development/python-modules/correctionlib/default.nix
index 2156bd978229..45be07ce4dce 100644
--- a/pkgs/development/python-modules/correctionlib/default.nix
+++ b/pkgs/development/python-modules/correctionlib/default.nix
@@ -18,12 +18,12 @@
 
 buildPythonPackage rec {
   pname = "correctionlib";
-  version = "2.2.2";
+  version = "2.3.3";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-h3eggtPLSF/8ShQ5xzowZW1KSlcI/YBsPu3lsSyzHkw=";
+    hash = "sha256-4WXY7XfZVYaJD63y7fPB6tCsc+wGAsgnFlgtFbX5IK0=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/coverage/default.nix b/pkgs/development/python-modules/coverage/default.nix
index 4e1f780e3613..2bcfe6c34655 100644
--- a/pkgs/development/python-modules/coverage/default.nix
+++ b/pkgs/development/python-modules/coverage/default.nix
@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "coverage";
-  version = "7.2.1";
+  version = "7.3.1";
   # uses f strings
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-x38qkJPM8yndUjqbKzyFTCDSo9lott7zuCAnLKZzIkI=";
+    hash = "sha256-bLf+FYHetnt4LBUxNlQeIJAaoxLO7a8UZ9yzUlV4eVI=";
   };
 
   # No tests in archive
diff --git a/pkgs/development/python-modules/crate/default.nix b/pkgs/development/python-modules/crate/default.nix
index 6535ab5f6c8d..2a6b5a1fc1ee 100644
--- a/pkgs/development/python-modules/crate/default.nix
+++ b/pkgs/development/python-modules/crate/default.nix
@@ -1,25 +1,26 @@
 { lib
 , fetchPypi
 , buildPythonPackage
+, dask
 , urllib3
 , geojson
+, pandas
 , pythonOlder
 , sqlalchemy
 , pytestCheckHook
 , pytz
-, stdenv
 }:
 
 buildPythonPackage rec {
   pname = "crate";
-  version = "0.31.1";
+  version = "0.33.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-SYjzyPqKR6BpC5z3P/ASDXe0mwi8Hz413b8Fm7cc5zo=";
+    hash = "sha256-bzsJnWw4rLjl1VrjmfNq4PudrnWPB1FzIuWAc9WmT6M=";
   };
 
   propagatedBuildInputs = [
@@ -29,6 +30,8 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
+    dask
+    pandas
     pytestCheckHook
     pytz
   ];
diff --git a/pkgs/development/python-modules/cronsim/default.nix b/pkgs/development/python-modules/cronsim/default.nix
index ef4e533a977c..098dbe711d9d 100644
--- a/pkgs/development/python-modules/cronsim/default.nix
+++ b/pkgs/development/python-modules/cronsim/default.nix
@@ -1,20 +1,22 @@
 { lib
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
 , pytestCheckHook
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "cronsim";
-  version = "2.3";
+  version = "2.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-ebFYIOANXZLmM6cbovwBCJH8Wr/HlJbOR9YGp8Jw7pc=";
+  src = fetchFromGitHub {
+    owner = "cuu508";
+    repo = "cronsim";
+    rev = "refs/tags/${version}";
+    hash = "sha256-TSVFkMCMmrMXaPJPPNjIML+z98i1iIYuKH7hHiZnJkg=";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/cryptodatahub/default.nix b/pkgs/development/python-modules/cryptodatahub/default.nix
new file mode 100644
index 000000000000..734569297796
--- /dev/null
+++ b/pkgs/development/python-modules/cryptodatahub/default.nix
@@ -0,0 +1,67 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitLab
+
+# build-system
+, setuptools
+
+# dependencies
+, asn1crypto
+, attrs
+, pathlib2
+, python-dateutil
+, six
+, urllib3
+
+# tests
+, beautifulsoup4
+, pyfakefs
+, unittestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "cryptodatahub";
+  version = "0.10.1";
+  format = "pyproject";
+
+  src = fetchFromGitLab {
+    owner = "coroner";
+    repo = "cryptodatahub";
+    rev = "v${version}";
+    hash = "sha256-eLdK5gFrLnbIBB1NTeQzpdCLPdATVjzPn5LhhUsDuwo=";
+  };
+
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  propagatedBuildInputs = [
+    asn1crypto
+    attrs
+    pathlib2
+    python-dateutil
+    six
+    urllib3
+  ];
+
+  pythonImportsCheck = [ "cryptodatahub" ];
+
+  nativeCheckInputs = [
+    beautifulsoup4
+    pyfakefs
+    unittestCheckHook
+  ];
+
+  preCheck = ''
+    # failing tests
+    rm test/updaters/test_common.py
+  '';
+
+  meta = with lib; {
+    description = "Repository of cryptography-related data";
+    homepage = "https://gitlab.com/coroner/cryptodatahub";
+    changelog = "https://gitlab.com/coroner/cryptodatahub/-/blob/${src.rev}/CHANGELOG.rst";
+    license = licenses.mpl20;
+    maintainers = with maintainers; [ ];
+  };
+}
diff --git a/pkgs/development/python-modules/cryptolyzer/default.nix b/pkgs/development/python-modules/cryptolyzer/default.nix
index f25c46907b61..da45bb33ffc0 100644
--- a/pkgs/development/python-modules/cryptolyzer/default.nix
+++ b/pkgs/development/python-modules/cryptolyzer/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "cryptolyzer";
-  version = "0.8.4";
+  version = "0.10.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "CryptoLyzer";
     inherit version;
-    hash = "sha256-7qMNz8F0B3bph/nHkS1VrkcF1bETWAklXFOlMWu3K9s=";
+    hash = "sha256-jb2yin3W+VfqFWJbQOXNml0xJEbSr1SfSSFupfxBHRs=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/cryptoparser/default.nix b/pkgs/development/python-modules/cryptoparser/default.nix
index afbbe513b21b..1eab372381bc 100644
--- a/pkgs/development/python-modules/cryptoparser/default.nix
+++ b/pkgs/development/python-modules/cryptoparser/default.nix
@@ -1,26 +1,36 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, setuptools
 , attrs
-, six
 , asn1crypto
+, cryptodatahub
 , python-dateutil
+, urllib3
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "cryptoparser";
-  version = "0.8.4";
+  version = "0.10.0";
+  format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-Sn4sfzu1Y1gC+4K9WdiZW92cYuVbUsBXcNbNQOv0BRw=";
+    pname = "CryptoParser";
+    inherit version;
+    hash = "sha256-43V82/nxtOa9y4fVOMsxhoSQpDxTyOcHIGsbRr0euAk=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
-    attrs
-    six
     asn1crypto
+    attrs
+    cryptodatahub
     python-dateutil
+    urllib3
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/cvxopt/default.nix b/pkgs/development/python-modules/cvxopt/default.nix
index 8c1da0f7f5c4..0a2b13ad4c81 100644
--- a/pkgs/development/python-modules/cvxopt/default.nix
+++ b/pkgs/development/python-modules/cvxopt/default.nix
@@ -21,13 +21,13 @@ assert (!blas.isILP64) && (!lapack.isILP64);
 
 buildPythonPackage rec {
   pname = "cvxopt";
-  version = "1.3.0";
+  version = "1.3.2";
 
   disabled = isPyPy; # hangs at [translation:info]
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ALGyMvnR+QLVeKnXWBS2f6AgdY1a5CLijKjO9iafpcY=";
+    hash = "sha256-NGH6QsGyJAuk2h2YXKc1A5FBV/xMd0FzJ+1tfYWs2+Y=";
   };
 
   buildInputs = (if stdenv.isDarwin then [ openblas ] else [ blas lapack ]);
diff --git a/pkgs/development/python-modules/cvxpy/default.nix b/pkgs/development/python-modules/cvxpy/default.nix
index 3d15d8d7776c..0fb8be981e10 100644
--- a/pkgs/development/python-modules/cvxpy/default.nix
+++ b/pkgs/development/python-modules/cvxpy/default.nix
@@ -67,6 +67,8 @@ buildPythonPackage rec {
     "test_diffcp_sdp_example"
     "test_huber"
     "test_partial_problem"
+    # https://github.com/cvxpy/cvxpy/issues/2174
+    "test_scipy_mi_time_limit_reached"
   ] ++ lib.optionals stdenv.isAarch64 [
     "test_ecos_bb_mi_lp_2" # https://github.com/cvxpy/cvxpy/issues/1241#issuecomment-780912155
   ];
diff --git a/pkgs/development/python-modules/cx-freeze/default.nix b/pkgs/development/python-modules/cx-freeze/default.nix
index b30fa8e5659f..db03a359a6bd 100644
--- a/pkgs/development/python-modules/cx-freeze/default.nix
+++ b/pkgs/development/python-modules/cx-freeze/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "cx-freeze";
-  version = "6.14.4";
+  version = "6.15.7";
   format = "pyproject";
 
   disabled = pythonOlder "3.5";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "cx_Freeze";
     inherit version;
-    hash = "sha256-ydox+o4B0t/dYD+nDiY5CmWupt1iMzyU2fA4tCqgVcg=";
+    hash = "sha256-+X9FWkpG7gwHbZIqKftT7/RioWXdBCP6J+J8KkRTtAs=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/cython-test-exception-raiser/default.nix b/pkgs/development/python-modules/cython-test-exception-raiser/default.nix
new file mode 100644
index 000000000000..e6f3f8b451b3
--- /dev/null
+++ b/pkgs/development/python-modules/cython-test-exception-raiser/default.nix
@@ -0,0 +1,38 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, cython
+, setuptools
+, wheel
+}:
+
+buildPythonPackage rec {
+  pname = "cython-test-exception-raiser";
+  version = "1.0.2";
+  format = "pyproject";
+
+  src = fetchFromGitHub {
+    owner = "twisted";
+    repo = "cython-test-exception-raiser";
+    rev = "v${version}";
+    hash = "sha256-fwMq0pOrFUJnPndH/a6ghoo6mlcVSxtsWazqE9mCx3M=";
+  };
+
+  nativeBuildInputs = [
+    cython
+    setuptools
+    wheel
+  ];
+
+  pythonImportsCheck = [
+    "cython_test_exception_raiser"
+  ];
+
+  meta = with lib; {
+    description = "Testing only. A cython simple extension which is used as helper for twisted/twisted Failure tests";
+    homepage = "https://github.com/twisted/cython-test-exception-raiser";
+    changelog = "https://github.com/twisted/cython-test-exception-raiser/blob/${src.rev}/CHANGELOG.rst";
+    license = with licenses; [ publicDomain mit ];
+    maintainers = with maintainers; [ ];
+  };
+}
diff --git a/pkgs/development/python-modules/cytoolz/default.nix b/pkgs/development/python-modules/cytoolz/default.nix
index 768950237acb..ce24c505b83b 100644
--- a/pkgs/development/python-modules/cytoolz/default.nix
+++ b/pkgs/development/python-modules/cytoolz/default.nix
@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "cytoolz";
-  version = "0.12.1";
+  version = "0.12.2";
   disabled = isPy27 || isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-/DOQk5dIHJDePOyDG/uI2X4iDckZOdmWkgIC8YS0ZI4=";
+    hash = "sha256-MdSwRV1y2RRkX4A9kX2vTzFNEVxw3gV404IN64sQH2Y=";
   };
 
   nativeBuildInputs = [ cython ];
diff --git a/pkgs/development/python-modules/dalle-mini/default.nix b/pkgs/development/python-modules/dalle-mini/default.nix
index 0f5a0f07e06d..f20b693d3870 100644
--- a/pkgs/development/python-modules/dalle-mini/default.nix
+++ b/pkgs/development/python-modules/dalle-mini/default.nix
@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "dalle-mini";
-  version = "0.1.4";
+  version = "0.1.5";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-UwCcoKbGxZT5XB+Mtv8kAHFdj0iLw8U1Ayo60y3Tm7U=";
+    hash = "sha256-k4XILjNNz0FPcAzwPEeqe5Lj24S2Y139uc9o/1IUS1c=";
   };
 
   format = "setuptools";
diff --git a/pkgs/development/python-modules/dash/default.nix b/pkgs/development/python-modules/dash/default.nix
index d990d710d639..5d99a40c004b 100644
--- a/pkgs/development/python-modules/dash/default.nix
+++ b/pkgs/development/python-modules/dash/default.nix
@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "dash";
-  version = "2.10.2";
+  version = "2.13.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -30,7 +30,7 @@ buildPythonPackage rec {
     owner = "plotly";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-OcY4nEtIfR9nvBaBwpHeUJkHXwWZp+LZxjhEkwjRC9k=";
+    hash = "sha256-+pTxEPuXtcu+ZekphqXD/k2tQ5werH/1ueGJOxA8pZw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/dask-awkward/default.nix b/pkgs/development/python-modules/dask-awkward/default.nix
index a0ae12d7c13e..a913f577b77b 100644
--- a/pkgs/development/python-modules/dask-awkward/default.nix
+++ b/pkgs/development/python-modules/dask-awkward/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "dask-awkward";
-  version = "2023.8.1";
+  version = "2023.9.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "dask-contrib";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-sSsd35Psf3VEydkNxtd9mSBzV23S7fRM/jhbC9T62kY=";
+    hash = "sha256-eGdOFI2KCpheMQcUH1jokyBO96dqyUlcl98jcgdRkYA=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix
index 355e16553be0..341a133c987c 100644
--- a/pkgs/development/python-modules/dask/default.nix
+++ b/pkgs/development/python-modules/dask/default.nix
@@ -38,7 +38,7 @@
 
 buildPythonPackage rec {
   pname = "dask";
-  version = "2023.8.0";
+  version = "2023.9.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -47,7 +47,7 @@ buildPythonPackage rec {
     owner = "dask";
     repo = "dask";
     rev = "refs/tags/${version}";
-    hash = "sha256-ZKjfxTJCu3EUOKz16+VP8+cPqQliFNc7AU1FPC1gOXw=";
+    hash = "sha256-NJLZyxVS5L25wC79mZ6kRjxxd5dYcjWiC3x3A5Topm8=";
   };
 
   nativeBuildInputs = [
@@ -140,6 +140,9 @@ buildPythonPackage rec {
     "test_dot"
     "test_dot_nan"
     "test_merge_column_with_nulls"
+    # FileNotFoundError: [Errno 2] No such file or directory: '/build/tmp301jryv_/createme/0.part'
+    "test_to_csv_nodir"
+    "test_to_json_results"
   ];
 
   __darwinAllowLocalNetworking = true;
diff --git a/pkgs/development/python-modules/databases/default.nix b/pkgs/development/python-modules/databases/default.nix
index 2f731daa1131..bbd16ffb126d 100644
--- a/pkgs/development/python-modules/databases/default.nix
+++ b/pkgs/development/python-modules/databases/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "databases";
-  version = "0.7.0";
+  version = "0.8.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "encode";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-3RRHXkM8/GoIcO6Y1EZGbnp/X5gzYkW/PV4bzGay6ZI=";
+    hash = "sha256-e3iMZBPdldZFuS7FyhbGj9SufnH5hBBt8MEUjixXfqA=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/databricks-sql-connector/default.nix b/pkgs/development/python-modules/databricks-sql-connector/default.nix
index 8d087712a539..f47949a6198e 100644
--- a/pkgs/development/python-modules/databricks-sql-connector/default.nix
+++ b/pkgs/development/python-modules/databricks-sql-connector/default.nix
@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "databricks-sql-connector";
-  version = "2.4.0";
+  version = "2.9.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     owner = "databricks";
     repo = "databricks-sql-python";
     rev = "refs/tags/v${version}";
-    hash = "sha256-V8Nl6xr96Xnd1gkw9R0aqXkitLESsAyW7ufTYn6ttLg=";
+    hash = "sha256-y4Pmkgq3hv6mVu0zBsoiqNOcsHM0mxTNiJOCCZ+rwA8=";
   };
 
   pythonRelaxDeps = [
diff --git a/pkgs/development/python-modules/dataset/default.nix b/pkgs/development/python-modules/dataset/default.nix
index a3f2d67d35a7..9446920d0b05 100644
--- a/pkgs/development/python-modules/dataset/default.nix
+++ b/pkgs/development/python-modules/dataset/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "dataset";
-  version = "1.6.0";
+  version = "1.6.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-fNvJBdZjtYKvhGzwULfP2iDNUrqhxiwRlhlFrHfmGdU=";
+    hash = "sha256-d9NiEY9nqMu0hI29MKs2K5+nz+vb+vQmycUAyziWmpk=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/datasets/default.nix b/pkgs/development/python-modules/datasets/default.nix
index eae7b663dd99..0802ae5cf6f6 100644
--- a/pkgs/development/python-modules/datasets/default.nix
+++ b/pkgs/development/python-modules/datasets/default.nix
@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "datasets";
-  version = "2.14.4";
+  version = "2.14.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
@@ -30,7 +30,7 @@ buildPythonPackage rec {
     owner = "huggingface";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-2XC5k546JvqUV4xeL1SRQOHDzItL1CE3bJQMjva3IkY=";
+    hash = "sha256-oLB6laY/Si071mBKoWlZpd1fqr/wNtAnhRvBKLjeEuE=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/datasette/default.nix b/pkgs/development/python-modules/datasette/default.nix
index 55c9cd652aa8..e5d169b6d3cc 100644
--- a/pkgs/development/python-modules/datasette/default.nix
+++ b/pkgs/development/python-modules/datasette/default.nix
@@ -43,7 +43,7 @@ buildPythonPackage rec {
 
   postPatch = ''
     substituteInPlace setup.py \
-      --replace '"pytest-runner"' "
+      --replace '"pytest-runner"' ""
   '';
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/datauri/default.nix b/pkgs/development/python-modules/datauri/default.nix
index 4c89eb9ba279..d5ed9bf0525e 100644
--- a/pkgs/development/python-modules/datauri/default.nix
+++ b/pkgs/development/python-modules/datauri/default.nix
@@ -1,31 +1,38 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, setuptools
+, pydantic
 , pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "datauri";
-  version = "1.1.0";
+  version = "2.0.0";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "fcurella";
     repo = "python-datauri";
-    rev = "v${version}";
-    hash = "sha256-Eevd/xxKgxvvsAfI/L/KShH+PfxffBGyVwKewLgyEu0=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-k4tlWRasGa2oQykCD9QJl65UAoZQMJVdyCfqlUBBgqY=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   pythonImportsCheck = [
     "datauri"
   ];
 
   nativeCheckInputs = [
+    pydantic
     pytestCheckHook
   ];
 
-  disabledTestPaths = [
-    # UnicodeDecodeError: 'utf-8' codec can't decode
-    "tests/test_file_ebcdic.txt"
+  disabledTests = [
+    "test_pydantic" # incompatible with pydantic v2
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/dbt-bigquery/default.nix b/pkgs/development/python-modules/dbt-bigquery/default.nix
index 9d456c84d22c..5b1e9aeeb946 100644
--- a/pkgs/development/python-modules/dbt-bigquery/default.nix
+++ b/pkgs/development/python-modules/dbt-bigquery/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "dbt-bigquery";
-  version = "1.5.3";
+  version = "1.6.4";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "dbt-labs";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-mzqUdT+dI7U0tHHcr0joIB1UCfKXrDdqhtVFShjIKus=";
+    hash = "sha256-m458gg5TQ7jznhA9QNi8KQ+ICxdQn58mS0jvyZ88Fmg=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/dbt-core/default.nix b/pkgs/development/python-modules/dbt-core/default.nix
index e927665bdc85..930dd5618ccf 100644
--- a/pkgs/development/python-modules/dbt-core/default.nix
+++ b/pkgs/development/python-modules/dbt-core/default.nix
@@ -30,14 +30,14 @@
 
 buildPythonPackage rec {
   pname = "dbt-core";
-  version = "1.5.5";
+  version = "1.6.2";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "dbt-labs";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-aAe3sNa4CxqynsFHoTLEYWo12jEF/LAyYMqnpy5cTbg=";
+    hash = "sha256-zmZdFOB0jQHamRJ7Zuzr/augP6Y2smAdUvqSXDZDuwo=";
   };
 
   sourceRoot = "${src.name}/core";
diff --git a/pkgs/development/python-modules/dbt-redshift/default.nix b/pkgs/development/python-modules/dbt-redshift/default.nix
index b757683e9516..46f62dcafd7e 100644
--- a/pkgs/development/python-modules/dbt-redshift/default.nix
+++ b/pkgs/development/python-modules/dbt-redshift/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "dbt-redshift";
-  version = "1.5.8";
+  version = "1.6.1";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "dbt-labs";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-T7cNszIroOT8TNfOzZpdJDR1+5ybhkXvyvvM5zokVgo=";
+    hash = "sha256-5sgge55BwvC00Gj3UvLS/uzCgNSi4j4YdVlg/LuJI+s=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/dbt-snowflake/default.nix b/pkgs/development/python-modules/dbt-snowflake/default.nix
index b32f7fbd9a6b..dccf0ed7f989 100644
--- a/pkgs/development/python-modules/dbt-snowflake/default.nix
+++ b/pkgs/development/python-modules/dbt-snowflake/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "dbt-snowflake";
-  version = "1.5.2";
+  version = "1.6.2";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "dbt-labs";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-Oz9BDvxSG4kOteuwKiPccxlsmQtOEwDLVyirDSWy1kY=";
+    hash = "sha256-AOO3VbU1R3/snH7U7K9XXokBGXtf9Udpv7eR5HCBxss=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/dbus-deviation/default.nix b/pkgs/development/python-modules/dbus-deviation/default.nix
index 016b18f25081..164c543a5ed7 100644
--- a/pkgs/development/python-modules/dbus-deviation/default.nix
+++ b/pkgs/development/python-modules/dbus-deviation/default.nix
@@ -9,12 +9,17 @@
 buildPythonPackage rec {
   pname = "dbus-deviation";
   version = "0.6.1";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
     hash = "sha256-4GuI7+IjiF0nJd9Rz3ybe0Y9HG8E6knUaQh0MY0Ot6M=";
   };
 
+  postPatch = ''
+    sed -i "/'sphinx',/d" setup.py
+  '';
+
   nativeBuildInputs = [
     setuptools-git
     sphinx
diff --git a/pkgs/development/python-modules/deal/default.nix b/pkgs/development/python-modules/deal/default.nix
index 861f9c6847ce..0333bb37ce3b 100644
--- a/pkgs/development/python-modules/deal/default.nix
+++ b/pkgs/development/python-modules/deal/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "deal";
-  version = "4.24.0";
+  version = "4.24.2";
   format = "pyproject";
   disabled = pythonOlder "3.7";
 
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     owner = "life4";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-5gd46SMucH0rek9talMJ74TMRRvUm5Up6pCusUIHDjE=";
+    hash = "sha256-bdIoKOOC7qSer9Cp9A55HG960xunKXT2WiXp0UC6tsI=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/deap/default.nix b/pkgs/development/python-modules/deap/default.nix
index a6e901199204..4f0d493c0f80 100644
--- a/pkgs/development/python-modules/deap/default.nix
+++ b/pkgs/development/python-modules/deap/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "deap";
-  version = "1.3.3";
+  version = "1.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-h3LxsP/wQtXlFrCuusLHBiQwRap9DejguGWPOAGBzzE=";
+    hash = "sha256-zAHemJLfp9G8mAPasoiS/q0XfwGCyB20c2CiQOrXeP8=";
   };
 
   propagatedBuildInputs = [ numpy matplotlib ];
diff --git a/pkgs/development/python-modules/debugpy/default.nix b/pkgs/development/python-modules/debugpy/default.nix
index 2cf365846246..85389fba2fb2 100644
--- a/pkgs/development/python-modules/debugpy/default.nix
+++ b/pkgs/development/python-modules/debugpy/default.nix
@@ -2,10 +2,8 @@
 , stdenv
 , buildPythonPackage
 , pythonOlder
-, pythonAtLeast
 , fetchFromGitHub
 , substituteAll
-, fetchpatch
 , gdb
 , django
 , flask
@@ -23,7 +21,7 @@ buildPythonPackage rec {
   version = "1.8.0";
   format = "setuptools";
 
-  disabled = pythonOlder "3.8" || pythonAtLeast "3.13";
+  disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "microsoft";
@@ -110,13 +108,8 @@ buildPythonPackage rec {
   __darwinAllowLocalNetworking = true;
 
   disabledTests = [
-    # https://github.com/microsoft/debugpy/issues/1241
-    "test_flask_breakpoint_multiproc"
-
-    # DeprecationWarning: pkg_resources is deprecated as an API
-    # Supposedly fixed in https://github.com/microsoft/debugpy/pull/1374,
-    # but still fails for a nix build
-    "test_gevent"
+    # testsuite gets stuck at this one
+    "test_attach_pid_client"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/deepdiff/default.nix b/pkgs/development/python-modules/deepdiff/default.nix
index 7f1f0481d228..93deb8c10b81 100644
--- a/pkgs/development/python-modules/deepdiff/default.nix
+++ b/pkgs/development/python-modules/deepdiff/default.nix
@@ -11,12 +11,13 @@
 , python-dateutil
 , pyyaml
 , toml
+, tomli-w
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "deepdiff";
-  version = "6.3.0";
+  version = "6.4.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -25,7 +26,7 @@ buildPythonPackage rec {
     owner = "seperman";
     repo = "deepdiff";
     rev = "refs/tags/${version}";
-    hash = "sha256-txZ1X1J8DwueDRpLP3OuRA+S9hc5G3YCmEG+AS6ZAkI=";
+    hash = "sha256-oO5+ZCDgqonxaHR95tSrPkZDar/fzr1FXtl6J2W3PeU=";
   };
 
   postPatch = ''
@@ -52,8 +53,15 @@ buildPythonPackage rec {
     numpy
     pytestCheckHook
     python-dateutil
+    tomli-w
   ] ++ passthru.optional-dependencies.cli;
 
+  disabledTests = [
+    # not compatible with pydantic 2.x
+    "test_pydantic1"
+    "test_pydantic2"
+  ];
+
   pythonImportsCheck = [
     "deepdiff"
   ];
diff --git a/pkgs/development/python-modules/defcon/default.nix b/pkgs/development/python-modules/defcon/default.nix
index 8d5d9da29a02..3203f0bb973e 100644
--- a/pkgs/development/python-modules/defcon/default.nix
+++ b/pkgs/development/python-modules/defcon/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "defcon";
-  version = "0.10.2";
+  version = "0.10.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ruOW5taeRa5lyCZHgTktTCkRaTSyc3rXbYIwtAwYKkQ=";
+    hash = "sha256-Vt4m18dfFk7qA+KLwRtMdpxo1wX6GG38rrVsJ/mkzAw=";
     extension = "zip";
   };
 
diff --git a/pkgs/development/python-modules/deprecated/default.nix b/pkgs/development/python-modules/deprecated/default.nix
index 4c8dae04e7bd..ed2cf8a01171 100644
--- a/pkgs/development/python-modules/deprecated/default.nix
+++ b/pkgs/development/python-modules/deprecated/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "deprecated";
-  version = "1.2.13";
+  version = "1.2.14";
   outputs = [ "out" "doc" ];
 
   src = fetchFromGitHub {
     owner = "tantale";
     repo = "deprecated";
-    rev = "v${version}";
-    hash = "sha256-rCDUY/TVmJqhrxDah62lEhqpr05JNZSyiFNTlHvSnmw=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-H5Gp2F/ChMeEH4fSYXIB34syDIzDymfN949ksJnS0k4=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/devtools/default.nix b/pkgs/development/python-modules/devtools/default.nix
index ec386f8e0b29..08a5f2e7f50c 100644
--- a/pkgs/development/python-modules/devtools/default.nix
+++ b/pkgs/development/python-modules/devtools/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "devtools";
-  version = "0.11.0";
+  version = "0.12.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "samuelcolvin";
     repo = "python-${pname}";
     rev = "refs/tags/v${version}";
-    hash = "sha256-ogogXZnuSFkWktCin+cyefjqIbGFRBVIeOrZJAa3hOE=";
+    hash = "sha256-1HFbNswdKa/9cQX0Gf6lLW1V5Kt/N4X6/5kQDdzp1Wo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/diff-match-patch/default.nix b/pkgs/development/python-modules/diff-match-patch/default.nix
index 3e05deb5e2d3..93d9e3288dda 100644
--- a/pkgs/development/python-modules/diff-match-patch/default.nix
+++ b/pkgs/development/python-modules/diff-match-patch/default.nix
@@ -1,21 +1,32 @@
-{ lib, buildPythonPackage, fetchPypi, python }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, flit-core
+, unittestCheckHook
+}:
 
 buildPythonPackage rec {
   pname = "diff-match-patch";
-  version = "20200713";
-
-  meta = {
-    homepage = "https://github.com/diff-match-patch-python/diff-match-patch";
-    description = "Diff, Match and Patch libraries for Plain Text";
-    license = lib.licenses.asl20;
-  };
+  version = "20230430";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "da6f5a01aa586df23dfc89f3827e1cafbb5420be9d87769eeb079ddfd9477a18";
+    hash = "sha256-lTAZzbnJ0snke1sSvP889HRvxFmOtAYHb6H8J+ah8Vw=";
   };
 
-  checkPhase = ''
-    ${python.interpreter} -m unittest -v diff_match_patch.tests
-  '';
+  nativeBuildInputs = [
+    flit-core
+  ];
+
+  nativeCheckInputs = [
+    unittestCheckHook
+  ];
+
+  meta = with lib; {
+    homepage = "https://github.com/diff-match-patch-python/diff-match-patch";
+    description = "Diff, Match and Patch libraries for Plain Text";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ ];
+  };
 }
diff --git a/pkgs/development/python-modules/dill/default.nix b/pkgs/development/python-modules/dill/default.nix
index 3caf068a1270..d6fdd2b97d2d 100644
--- a/pkgs/development/python-modules/dill/default.nix
+++ b/pkgs/development/python-modules/dill/default.nix
@@ -2,6 +2,7 @@
 , buildPythonPackage
 , fetchFromGitHub
 , python
+, pythonOlder
 , setuptools
 
 # passthru tests
@@ -11,14 +12,16 @@
 
 buildPythonPackage rec {
   pname = "dill";
-  version = "0.3.6";
+  version = "0.3.7";
   format = "pyproject";
 
+  disabled = pythonOlder "3.7";
+
   src = fetchFromGitHub {
     owner = "uqfoundation";
     repo = pname;
     rev = "refs/tags/dill-${version}";
-    hash = "sha256-lh1o/TqnqtYN9xTZom33y1/7ZhMEAFpheLdtalwgObQ=";
+    hash = "sha256-1cRGA5RuNjlpc3jq9SAsUYgmPauIV8zRF9SxOmveljI=";
   };
 
   nativeBuildInputs = [
@@ -40,6 +43,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Serialize all of python (almost)";
     homepage = "https://github.com/uqfoundation/dill/";
+    changelog = "https://github.com/uqfoundation/dill/releases/tag/dill-${version}";
     license = licenses.bsd3;
     maintainers = with maintainers; [ tjni ];
   };
diff --git a/pkgs/development/python-modules/dinghy/default.nix b/pkgs/development/python-modules/dinghy/default.nix
index aea49cde6f18..cae8c8abcc66 100644
--- a/pkgs/development/python-modules/dinghy/default.nix
+++ b/pkgs/development/python-modules/dinghy/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "dinghy";
-  version = "1.2.0";
+  version = "1.3.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "nedbat";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-xtcNcykfgcWvifso0xaeMT31+G5x4HCp+tLAIEEq4cw=";
+    hash = "sha256-a1CHbPSoiR3JbuAXYPJc1EsSq13DbrOttk9zLFF9+cM=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/dirty-equals/default.nix b/pkgs/development/python-modules/dirty-equals/default.nix
index 5d0c94686926..9f40226e6bb3 100644
--- a/pkgs/development/python-modules/dirty-equals/default.nix
+++ b/pkgs/development/python-modules/dirty-equals/default.nix
@@ -9,43 +9,48 @@
 , pytz
 }:
 
-buildPythonPackage rec {
-  pname = "dirty-equals";
-  version = "0.7.0";
-  format = "pyproject";
-
-  disabled = pythonOlder "3.8";
-
-  src = fetchFromGitHub {
-    owner = "samuelcolvin";
-    repo = pname;
-    rev = "refs/tags/v${version}";
-    hash = "sha256-ShbkPGj1whOQ11bFLUSTfvVEVlvc3JUzRDICbBohgMM=";
+let
+  dirty-equals = buildPythonPackage rec {
+    pname = "dirty-equals";
+    version = "0.7.0";
+    format = "pyproject";
+
+    disabled = pythonOlder "3.8";
+
+    src = fetchFromGitHub {
+      owner = "samuelcolvin";
+      repo = pname;
+      rev = "refs/tags/v${version}";
+      hash = "sha256-ShbkPGj1whOQ11bFLUSTfvVEVlvc3JUzRDICbBohgMM=";
+    };
+
+    nativeBuildInputs = [
+      hatchling
+    ];
+
+    propagatedBuildInputs = [
+      pytz
+    ];
+
+    doCheck = false;
+    passthru.tests.pytest = dirty-equals.overrideAttrs { doCheck = true; };
+
+    nativeCheckInputs = [
+      pydantic
+      pytest-examples
+      pytestCheckHook
+    ];
+
+    pythonImportsCheck = [
+      "dirty_equals"
+    ];
+
+    meta = with lib; {
+      description = "Module for doing dirty (but extremely useful) things with equals";
+      homepage = "https://github.com/samuelcolvin/dirty-equals";
+      changelog = "https://github.com/samuelcolvin/dirty-equals/releases/tag/v${version}";
+      license = with licenses; [ mit ];
+      maintainers = with maintainers; [ fab ];
+    };
   };
-
-  nativeBuildInputs = [
-    hatchling
-  ];
-
-  propagatedBuildInputs = [
-    pytz
-  ];
-
-  nativeCheckInputs = [
-    pydantic
-    pytest-examples
-    pytestCheckHook
-  ];
-
-  pythonImportsCheck = [
-    "dirty_equals"
-  ];
-
-  meta = with lib; {
-    description = "Module for doing dirty (but extremely useful) things with equals";
-    homepage = "https://github.com/samuelcolvin/dirty-equals";
-    changelog = "https://github.com/samuelcolvin/dirty-equals/releases/tag/v${version}";
-    license = with licenses; [ mit ];
-    maintainers = with maintainers; [ fab ];
-  };
-}
+in dirty-equals
diff --git a/pkgs/development/python-modules/distlib/default.nix b/pkgs/development/python-modules/distlib/default.nix
index f9668720653b..ca91e77a6672 100644
--- a/pkgs/development/python-modules/distlib/default.nix
+++ b/pkgs/development/python-modules/distlib/default.nix
@@ -7,12 +7,12 @@
 
 buildPythonPackage rec {
   pname = "distlib";
-  version = "0.3.6";
+  version = "0.3.7";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-FLrS2bBNOjYSesl/MLEqGSaPIRBj2PjuT0cQiJbhG0Y=";
+    hash = "sha256-na/lSzSgKOr9lQOdXl1IUaE3NFQPEzEGDTHJkW5xR6g=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/distrax/default.nix b/pkgs/development/python-modules/distrax/default.nix
index 69679a8bbf7f..80dc392c603d 100644
--- a/pkgs/development/python-modules/distrax/default.nix
+++ b/pkgs/development/python-modules/distrax/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "distrax";
-  version = "0.1.3";
+  version = "0.1.4";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-x9ORfhGX5catEZMfR+iXkZSRa/wIb0B3CrCWOWf35Ks=";
+    hash = "sha256-klXT5wfnWUGMrf5sQhYqz7Foc/Ou5y4GIFgtTff1ZFQ=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/dj-rest-auth/default.nix b/pkgs/development/python-modules/dj-rest-auth/default.nix
index a2219ae22cc5..4bd5d486d4a9 100644
--- a/pkgs/development/python-modules/dj-rest-auth/default.nix
+++ b/pkgs/development/python-modules/dj-rest-auth/default.nix
@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "dj-rest-auth";
-  version = "4.0.1";
+  version = "5.0.1";
 
   src = fetchFromGitHub {
     owner = "iMerica";
     repo = "dj-rest-auth";
     rev = "refs/tags/${version}";
-    hash = "sha256-+ladx0b/bvvUW8zLjtG8IiWWdfPTqqm/KYbEK9uiFaU=";
+    hash = "sha256-PTFUZ54vKlufKCQyJb+QB/+hI15r+Z0auTjnc38yMLg=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/django-allauth/default.nix b/pkgs/development/python-modules/django-allauth/default.nix
index 439c4c2cb564..49864b0b9bbb 100644
--- a/pkgs/development/python-modules/django-allauth/default.nix
+++ b/pkgs/development/python-modules/django-allauth/default.nix
@@ -1,18 +1,35 @@
 { lib
 , buildPythonPackage
-, django
 , fetchFromGitHub
-, python3-openid
 , pythonOlder
+
+# build-system
+, setuptools
+
+# dependencies
+, django
+, python3-openid
 , requests
 , requests-oauthlib
 , pyjwt
+
+# optional-dependencies
+, python3-saml
+, qrcode
+
+# tests
+, pillow
+, pytestCheckHook
+, pytest-django
+
+# passthru tests
+, dj-rest-auth
 }:
 
 buildPythonPackage rec {
   pname = "django-allauth";
-  version = "0.54.0";
-  format = "setuptools";
+  version = "0.57.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
@@ -20,13 +37,12 @@ buildPythonPackage rec {
     owner = "pennersr";
     repo = pname;
     rev = version;
-    hash = "sha256-0yJsHJhYeiCHQg/QzFD/metb97rcUJ+LYlsl7fGYmuM=";
+    hash = "sha256-zhKqvm43rw28UKNFdfJ2C1dIeZfPqmchb1rJykm1lx4=";
   };
 
-  postPatch = ''
-    chmod +x manage.py
-    patchShebangs manage.py
-  '';
+  nativeBuildInputs = [
+    setuptools
+  ];
 
   propagatedBuildInputs = [
     django
@@ -37,19 +53,34 @@ buildPythonPackage rec {
   ]
   ++ pyjwt.optional-dependencies.crypto;
 
-  checkPhase = ''
-    # test is out of date
-    rm allauth/socialaccount/providers/cern/tests.py
-
-    ./manage.py test
-  '';
+  passthru.optional-dependencies = {
+    saml = [
+      python3-saml
+    ];
+    mfa = [
+      qrcode
+    ];
+  };
 
   pythonImportsCheck = [
     "allauth"
   ];
 
+  nativeCheckInputs = [
+    pillow
+    pytestCheckHook
+    pytest-django
+  ]
+  ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
+
+  passthru.tests = {
+    inherit dj-rest-auth;
+  };
+
   meta = with lib; {
+    changelog = "https://github.com/pennersr/django-allauth/blob/${version}/ChangeLog.rst";
     description = "Integrated set of Django applications addressing authentication, registration, account management as well as 3rd party (social) account authentication";
+    downloadPage = "https://github.com/pennersr/django-allauth";
     homepage = "https://www.intenct.nl/projects/django-allauth";
     license = licenses.mit;
     maintainers = with maintainers; [ derdennisop ];
diff --git a/pkgs/development/python-modules/django-anymail/default.nix b/pkgs/development/python-modules/django-anymail/default.nix
index fb8ca502695d..50b86d7fb90a 100644
--- a/pkgs/development/python-modules/django-anymail/default.nix
+++ b/pkgs/development/python-modules/django-anymail/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname = "django-anymail";
-  version = "9.0";
+  version = "10.1";
 
   src = fetchFromGitHub {
     owner = "anymail";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-qEYBHsaHo1gmrsa6q7DQiUJurC7cXhv5e/SQ7R3Tkzc=";
+    hash = "sha256-unmbYQFLeqfqE1uFLMPLUad1UqA+sgbTzwRfpRhM3ik=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/django-environ/default.nix b/pkgs/development/python-modules/django-environ/default.nix
index bb3cd1acf7ce..b0e3f6eb0c40 100644
--- a/pkgs/development/python-modules/django-environ/default.nix
+++ b/pkgs/development/python-modules/django-environ/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "django-environ";
-  version = "0.9.0";
+  version = "0.11.2";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-v/U4FTMFYyjJrAL3F5C9W/HOqBsb7rZI8ouByeg+CiE=";
+    hash = "sha256-8yqHqgiZiUwn1OF3b6a0d+gWTtf2s+QQpiptcsqvZL4=";
   };
 
   # The testsuite fails to modify the base environment
diff --git a/pkgs/development/python-modules/django-extensions/default.nix b/pkgs/development/python-modules/django-extensions/default.nix
index 99e9fe078ff4..eb46b6b86920 100644
--- a/pkgs/development/python-modules/django-extensions/default.nix
+++ b/pkgs/development/python-modules/django-extensions/default.nix
@@ -1,7 +1,6 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 , django
 , factory-boy
 , mock
@@ -16,23 +15,15 @@
 
 buildPythonPackage rec {
   pname = "django-extensions";
-  version = "3.2.1";
+  version = "3.2.3";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-i8A/FMba1Lc3IEBzefP3Uu23iGcDGYqo5bNv+u6hKQI=";
+    hash = "sha256-A2+5FBv0IhTJPkwgd7je+B9Ac64UHJEa3HRBbWr2FxM=";
   };
 
-  patches = [
-    (fetchpatch {
-      # pygments 2.14 compat for tests
-      url = "https://github.com/django-extensions/django-extensions/commit/61ebfe38f8fca9225b41bec5418e006e6a8815e1.patch";
-      hash = "sha256-+sxaQMmKi/S4IlfHqARPGhaqc+F1CXUHVFyeU/ArW2U=";
-    })
-  ];
-
   postPatch = ''
     substituteInPlace setup.cfg \
       --replace "--cov=django_extensions --cov-report html --cov-report term" ""
diff --git a/pkgs/development/python-modules/django-filter/default.nix b/pkgs/development/python-modules/django-filter/default.nix
index 1225a3301a10..dcbcede30563 100644
--- a/pkgs/development/python-modules/django-filter/default.nix
+++ b/pkgs/development/python-modules/django-filter/default.nix
@@ -1,43 +1,44 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, flit-core
 , django
-, djangorestframework, python, mock
+, djangorestframework
+, pytestCheckHook
+, pytest-django
+, python
 }:
 
 buildPythonPackage rec {
   pname = "django-filter";
-  version = "22.1";
+  version = "23.3";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-7Uc7duhPfoOyURuyBQw++zbRNSB9ASjf465LNuNZS6U=";
+    hash = "sha256-AV/hVVguGAW0Bik0Tkps88xARQgn0pTQQLS4wXSan6Y=";
   };
 
+  nativeBuildInputs = [ flit-core ];
+
   propagatedBuildInputs = [ django ];
 
   pythonImportsCheck = [
     "django_filters"
   ];
 
-  # Tests fail (needs the 'crispy_forms' module not packaged on nixos)
-  doCheck = false;
-
   nativeCheckInputs = [
     djangorestframework
-    django
-    mock
+    pytestCheckHook
+    pytest-django
   ];
 
-  checkPhase = ''
-    runHook preCheck
-    ${python.interpreter} runtests.py tests
-    runHook postCheck
-  '';
+  env.DJANGO_SETTINGS_MODULE = "tests.settings";
 
   meta = with lib; {
     description = "Reusable Django application for allowing users to filter querysets dynamically";
-    homepage = "https://pypi.org/project/django-filter/";
+    homepage = "https://github.com/carltongibson/django-filter";
+    changelog = "https://github.com/carltongibson/django-filter/blob/v${version}/CHANGES.rst";
     license = licenses.bsd3;
     maintainers = with maintainers; [ mmai ];
   };
diff --git a/pkgs/development/python-modules/django-hijack/default.nix b/pkgs/development/python-modules/django-hijack/default.nix
index ef77abefeeae..01e1593a82ce 100644
--- a/pkgs/development/python-modules/django-hijack/default.nix
+++ b/pkgs/development/python-modules/django-hijack/default.nix
@@ -19,14 +19,14 @@
 
 buildPythonPackage rec {
   pname = "django-hijack";
-  version = "3.3.0";
+  version = "3.4.1";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "django-hijack";
     repo = "django-hijack";
     rev = "refs/tags/${version}";
-    hash = "sha256-ytQ4xxkBAC3amQbenD8RO5asrbfNAjOspWUY3c2hkig=";
+    hash = "sha256-y8KT/Fbk2eQDbGzcJtLdwS6jPCNoTWXousvqY+GlFnQ=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/django-import-export/default.nix b/pkgs/development/python-modules/django-import-export/default.nix
index bc87f6f5dfd6..5f68c82b1f56 100644
--- a/pkgs/development/python-modules/django-import-export/default.nix
+++ b/pkgs/development/python-modules/django-import-export/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "django-import-export";
-  version = "3.2.0";
+  version = "3.3.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "django-import-export";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-ws9gUPCr5nM8HGbCt9+6IFjLgAKiCMQRkY/yfIb2mng=";
+    hash = "sha256-9eFBFTx+M28tbIKflldvDJW1po5ht/5FBX5ImfHGFuk=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/django-mailman3/default.nix b/pkgs/development/python-modules/django-mailman3/default.nix
index 6639257740bc..c68c554b9b9e 100644
--- a/pkgs/development/python-modules/django-mailman3/default.nix
+++ b/pkgs/development/python-modules/django-mailman3/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, fetchpatch
 
 # propagates
 , django-gravatar2
@@ -24,6 +25,17 @@ buildPythonPackage rec {
     hash = "sha256-GpI1W0O9aJpLF/mcS23ktJDZsP69S2zQy7drOiWBnTM=";
   };
 
+  patches = [
+    (fetchpatch {
+      url = "https://gitlab.com/mailman/django-mailman3/-/commit/840d0d531a0813de9a30e72427e202aea21b40fe.patch";
+      hash = "sha256-vltvsIP/SWpQZeXDUB+GWlTu+ghFMUqIT8i6CrYcmGo=";
+    })
+    (fetchpatch {
+      url = "https://gitlab.com/mailman/django-mailman3/-/commit/25c55e31d28f2fa8eb23f0e83c12f9b0a05bfbf0.patch";
+      hash = "sha256-ug5tBmnVfJTn5ufDDVg/cEtsZM59jQYJpQZV51T3qIc=";
+    })
+  ];
+
   postPatch = ''
     substituteInPlace setup.py \
       --replace 'django>=3.2,<4.2' 'django>=3.2,<4.3'
diff --git a/pkgs/development/python-modules/django-pattern-library/default.nix b/pkgs/development/python-modules/django-pattern-library/default.nix
index 00b6fe9c978f..76d376d11c09 100644
--- a/pkgs/development/python-modules/django-pattern-library/default.nix
+++ b/pkgs/development/python-modules/django-pattern-library/default.nix
@@ -1,47 +1,59 @@
-{ beautifulsoup4
-, buildPythonPackage
-, django
+{ buildPythonPackage
 , fetchFromGitHub
+, fetchpatch
 , lib
-, markdown
+
+# build-system
 , poetry-core
-, python
+
+# dependencies
+, django
+, markdown
 , pyyaml
+
+# tests
+, beautifulsoup4
+, pytestCheckHook
+, pytest-django
 }:
 
 buildPythonPackage rec {
   pname = "django-pattern-library";
-  version = "1.0.0";
+  version = "1.0.1";
   format = "pyproject";
 
   src = fetchFromGitHub {
-    repo = pname;
     owner = "torchbox";
+    repo = "django-pattern-library";
     rev = "v${version}";
-    sha256 = "sha256-V299HpbfNLa9cpVhBfzD41oe95xqh+ktQVMMVvm5Xao=";
+    hash = "sha256-Q8rv7RDlstTSlwmbmHV0vrnCV/lwz6VJf27BUllA34Y=";
   };
 
+  patches = [
+    (fetchpatch {
+      # https://github.com/torchbox/django-pattern-library/pull/232
+      url = "https://github.com/torchbox/django-pattern-library/commit/e7a9a8928a885941391fb584eba81578a292ee7d.patch";
+      hash = "sha256-3uUoxdVYEiF+to88qZRhOkh1++RfmsqCzO9JNMDqz6g=";
+    })
+  ];
+
+  nativeBuildInputs = [
+    poetry-core
+  ];
+
   propagatedBuildInputs = [
     django
     pyyaml
     markdown
   ];
 
-  postPatch = ''
-    substituteInPlace pyproject.toml \
-    --replace poetry.masonry.api poetry.core.masonry.api
-  '';
-
-  nativeBuildInputs = [ poetry-core ];
-
-  checkInputs = [
+  nativeCheckInputs = [
     beautifulsoup4
+    pytestCheckHook
+    pytest-django
   ];
 
-  checkPhase = ''
-    export DJANGO_SETTINGS_MODULE=tests.settings.dev
-    ${python.interpreter} -m django test
-  '';
+  env.DJANGO_SETTINGS_MODULE = "tests.settings.dev";
 
   pythonImportsCheck = [ "pattern_library" ];
 
@@ -51,7 +63,5 @@ buildPythonPackage rec {
     changelog = "https://github.com/torchbox/django-pattern-library/blob/v${version}/CHANGELOG.md";
     license = licenses.bsd3;
     maintainers = with maintainers; [ sephi ];
-    # https://github.com/torchbox/django-pattern-library/issues/212
-    broken = lib.versionAtLeast django.version "4.2";
   };
 }
diff --git a/pkgs/development/python-modules/django-redis/default.nix b/pkgs/development/python-modules/django-redis/default.nix
index e7aed3f22b59..26a9c784f88d 100644
--- a/pkgs/development/python-modules/django-redis/default.nix
+++ b/pkgs/development/python-modules/django-redis/default.nix
@@ -20,7 +20,7 @@
 
 let
   pname = "django-redis";
-  version = "5.3.0";
+  version = "5.4.0";
 in
 buildPythonPackage {
   inherit pname version;
@@ -30,8 +30,8 @@ buildPythonPackage {
   src = fetchFromGitHub {
     owner = "jazzband";
     repo = "django-redis";
-    rev = version;
-    hash = "sha256-eX9rUUvpkRrkZ82YalWn8s9DTw6nsbGzi1A6ibRoQGw=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-m7z3c7My24vrSSnyfDQ/LlWhy7pV4U0L8LATMvkfczc=";
   };
 
   postPatch = ''
@@ -71,12 +71,12 @@ buildPythonPackage {
     # ModuleNotFoundError: No module named 'test_cache_options'
     "test_custom_key_function"
     # ModuleNotFoundError: No module named 'test_client'
+    "test_delete_pattern_calls_delete_for_given_keys"
     "test_delete_pattern_calls_get_client_given_no_client"
     "test_delete_pattern_calls_make_pattern"
-    "test_delete_pattern_calls_scan_iter_with_count_if_itersize_given"
     "test_delete_pattern_calls_pipeline_delete_and_execute"
     "test_delete_pattern_calls_scan_iter"
-    "test_delete_pattern_calls_delete_for_given_keys"
+    "test_delete_pattern_calls_scan_iter_with_count_if_itersize_given"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/django-storages/default.nix b/pkgs/development/python-modules/django-storages/default.nix
index 5b638aa05b34..1bce8c0d751e 100644
--- a/pkgs/development/python-modules/django-storages/default.nix
+++ b/pkgs/development/python-modules/django-storages/default.nix
@@ -1,53 +1,90 @@
 { lib
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
+
+# build-system
+, setuptools
+
+# dependencies
 , django
+
+# optional-dependencies
 , azure-storage-blob
 , boto3
 , dropbox
 , google-cloud-storage
 , libcloud
 , paramiko
+
+# tests
+, cryptography
+, moto
+, pytestCheckHook
+, rsa
 }:
 
 buildPythonPackage rec {
   pname = "django-storages";
-  version = "1.13.2";
+  version = "1.14";
+  format = "pyproject";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-y63RXJCc63JH1P/FA/Eqm+w2mZ340L73wx5XF31RJog=";
+  src = fetchFromGitHub {
+    owner = "jschneier";
+    repo = "django-storages";
+    rev = "refs/tags/${version}";
+    hash = "sha256-q+vQm1T5/ueGPfwzuUOmSI/nESchqJc4XizJieBsLWc=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
     django
   ];
 
-  preCheck = ''
-    export DJANGO_SETTINGS_MODULE=tests.settings
-    # timezone issues https://github.com/jschneier/django-storages/issues/1171
-    substituteInPlace tests/test_sftp.py \
-      --replace 'test_accessed_time' 'dont_test_accessed_time' \
-      --replace 'test_modified_time' 'dont_test_modified_time'
-  '';
-
-  nativeCheckInputs = [
-    azure-storage-blob
-    boto3
-    dropbox
-    google-cloud-storage
-    libcloud
-    paramiko
-  ];
+  passthru.optional-dependencies = {
+    azure = [
+      azure-storage-blob
+    ];
+    boto3 = [
+      boto3
+    ];
+    dropbox = [
+      dropbox
+    ];
+    google = [
+      google-cloud-storage
+    ];
+    libcloud = [
+      libcloud
+    ];
+    s3 = [
+      boto3
+    ];
+    sftp = [
+      paramiko
+    ];
+  };
 
   pythonImportsCheck = [
     "storages"
   ];
 
+  env.DJANGO_SETTINGS_MODULE = "tests.settings";
+
+  nativeCheckInputs = [
+    cryptography
+    moto
+    pytestCheckHook
+    rsa
+  ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
+
   meta = with lib; {
+    changelog = "https://github.com/jschneier/django-storages/blob/${version}/CHANGELOG.rst";
     description = "Collection of custom storage backends for Django";
+    downloadPage = "https://github.com/jschneier/django-storages/";
     homepage = "https://django-storages.readthedocs.io";
-    changelog = "https://github.com/jschneier/django-storages/blob/${version}/CHANGELOG.rst";
     license = licenses.bsd3;
     maintainers = with maintainers; [ mmai ];
   };
diff --git a/pkgs/development/python-modules/django-stubs/default.nix b/pkgs/development/python-modules/django-stubs/default.nix
index fe7e96579cdb..6dcc875884e0 100644
--- a/pkgs/development/python-modules/django-stubs/default.nix
+++ b/pkgs/development/python-modules/django-stubs/default.nix
@@ -14,14 +14,14 @@
 
 buildPythonPackage rec {
   pname = "django-stubs";
-  version = "4.2.3";
+  version = "4.2.4";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-2tqzm0bZro83qOh5xZDzmp4EK1ZcA/oMWo91S0QbHyM=";
+    hash = "sha256-fUoTLDgVGYFehlwnqJ7KQby9BgVoMlByJIFqQ9dcYBw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/django-taggit/default.nix b/pkgs/development/python-modules/django-taggit/default.nix
index 4260f76e03c5..81326d195a2d 100644
--- a/pkgs/development/python-modules/django-taggit/default.nix
+++ b/pkgs/development/python-modules/django-taggit/default.nix
@@ -2,7 +2,6 @@
 , buildPythonPackage
 , pythonOlder
 , fetchPypi
-, fetchpatch
 , django
 , djangorestframework
 , python
@@ -10,24 +9,16 @@
 
 buildPythonPackage rec {
   pname = "django-taggit";
-  version = "3.1.0";
+  version = "4.0.0";
   format = "setuptools";
 
-  disabled = pythonOlder "3.6";
+  disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-yPLk6uOHk5CJs9ddHYZJ4AiICXDAaM6dDoL4f9XilQg=";
+    hash = "sha256-TVLenTckWpufmMDscf3M8dIoPjjohm1Ap65qO2eHoWE=";
   };
 
-  patches = [
-    (fetchpatch {
-      # Django 4.2 support; https://github.com/jazzband/django-taggit/pull/850
-      url = "https://github.com/jazzband/django-taggit/commit/5f19cfbaa14e8d6d4d1679529eb168a87ca97908.patch";
-      hash = "sha256-KcsiACLy3+1JoFquu//Kz+iAySZQAVIuBEKzNZaaR9s=";
-    })
-  ];
-
   propagatedBuildInputs = [
     django
   ];
diff --git a/pkgs/development/python-modules/django/3.nix b/pkgs/development/python-modules/django/3.nix
index 9c8e13842422..7796c31ebd0e 100644
--- a/pkgs/development/python-modules/django/3.nix
+++ b/pkgs/development/python-modules/django/3.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "django";
-  version = "3.2.20";
+  version = "3.2.22";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     pname = "Django";
     inherit version;
-    hash = "sha256-3sKhFnh7jhSWIBS/eOEgu6RUE1EI4a+em5Gt57KWTEA=";
+    hash = "sha256-g7bWawbkhIB9d4Jj/cf5GG1NwYYvz6ZQeDBEasawYLo=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/django/4.nix b/pkgs/development/python-modules/django/4.nix
index d694ff7fb033..582a2fab79c2 100644
--- a/pkgs/development/python-modules/django/4.nix
+++ b/pkgs/development/python-modules/django/4.nix
@@ -42,14 +42,14 @@
 
 buildPythonPackage rec {
   pname = "Django";
-  version = "4.2.5";
+  version = "4.2.6";
   format = "pyproject";
 
   disabled = pythonOlder "3.10";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-XlwclUj/t3lrSopHgumi5aPfNhUln8G/0+vHO2RhRsE=";
+    hash = "sha256-CPQfRotjM1rqDZBMVyngJQMA9qGQe/KTplSZSWzbxo8=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/docker/default.nix b/pkgs/development/python-modules/docker/default.nix
index f4c59515315c..80c73f2fe0a6 100644
--- a/pkgs/development/python-modules/docker/default.nix
+++ b/pkgs/development/python-modules/docker/default.nix
@@ -14,14 +14,14 @@
 
 buildPythonPackage rec {
   pname = "docker";
-  version = "6.0.1";
+  version = "6.1.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-iWxCguXHr1xF6LaDsLDDOTKXT+blD8aQagqDYWqz2pc=";
+    hash = "sha256-qm0XgwBFul7wFo1eqjTTe+6xE5SMQTr/4dWZH8EfmiA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/docopt-ng/default.nix b/pkgs/development/python-modules/docopt-ng/default.nix
index a6297780a83a..cdeda778e0dc 100644
--- a/pkgs/development/python-modules/docopt-ng/default.nix
+++ b/pkgs/development/python-modules/docopt-ng/default.nix
@@ -1,17 +1,24 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, pdm-backend
 }:
 
 buildPythonPackage rec {
   pname = "docopt-ng";
-  version = "0.8.1";
+  version = "0.9.0";
+  format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-6mphooj8hk7uayLW/iiqIC1Z/Ib60F8W/145zE6n9uM=";
+    pname = "docopt_ng";
+    inherit version;
+    hash = "sha256-kcbaELW7by6eJTRYKfuCeMeK8Bn2/ECIetSbBgSDsdc=";
   };
 
+  nativeBuildInputs = [
+    pdm-backend
+  ];
+
   pythonImportsCheck = [ "docopt" ];
   doCheck = false; # no tests in the package
 
diff --git a/pkgs/development/python-modules/docutils/default.nix b/pkgs/development/python-modules/docutils/default.nix
index ca7fcae7406e..136f679fcf6e 100644
--- a/pkgs/development/python-modules/docutils/default.nix
+++ b/pkgs/development/python-modules/docutils/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "docutils";
-  version = "0.19";
+  version = "0.20.1";
 
   disabled = pythonOlder "3.7";
 
@@ -16,7 +16,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-M5laZ1PDC39Xf+v8LFBBH+xqrH9//rfEz+WZEHLc+eY=";
+    hash = "sha256-8IpOJ2w6FYOobc4+NKuj/gTQK7ot1R7RYQYkToqSPjs=";
   };
 
   # Only Darwin needs LANG, but we could set it in general.
diff --git a/pkgs/development/python-modules/dogpile-cache/default.nix b/pkgs/development/python-modules/dogpile-cache/default.nix
index 4f5337fdb04c..069d08f4d551 100644
--- a/pkgs/development/python-modules/dogpile-cache/default.nix
+++ b/pkgs/development/python-modules/dogpile-cache/default.nix
@@ -2,41 +2,45 @@
 , buildPythonPackage
 , fetchPypi
 , pythonOlder
+, setuptools
 , pytestCheckHook
-, mock
 , mako
 , decorator
 , stevedore
+, typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "dogpile-cache";
-  version = "1.2.0";
+  version = "1.2.2";
+  format = "pyproject";
+
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     pname = "dogpile.cache";
     inherit version;
-    hash = "sha256-R1VMhgzrSE3Vrvn/H4j+yz1K72u5IRlFD1vLqgJrv7E=";
+    hash = "sha256-/ZAiwNnLra3yCUI5GpWtrylr6AtC2qjiAvjeHCHxmLI=";
   };
 
-  preCheck = ''
-    # Disable concurrency tests that often fail,
-    # probably some kind of timing issue.
-    rm tests/test_lock.py
-    # Failing tests. https://bitbucket.org/zzzeek/dogpile.cache/issues/116
-    rm tests/cache/test_memcached_backend.py
-  '';
-
-  dontUseSetuptoolsCheck = true;
+  nativeBuildInputs = [
+    setuptools
+  ];
 
-  nativeCheckInputs = [ pytestCheckHook mock mako ];
+  propagatedBuildInputs = [
+    decorator
+    stevedore
+    typing-extensions
+  ];
 
-  propagatedBuildInputs = [ decorator stevedore ];
+  nativeCheckInputs = [
+    pytestCheckHook
+    mako
+  ];
 
   meta = with lib; {
     description = "A caching front-end based on the Dogpile lock";
-    homepage = "https://bitbucket.org/zzzeek/dogpile.cache";
+    homepage = "https://github.com/sqlalchemy/dogpile.cache";
     license = licenses.bsd3;
     maintainers = with maintainers; [ ];
   };
diff --git a/pkgs/development/python-modules/draftjs-exporter/default.nix b/pkgs/development/python-modules/draftjs-exporter/default.nix
index aac2ed2f6baf..ef94901e9aac 100644
--- a/pkgs/development/python-modules/draftjs-exporter/default.nix
+++ b/pkgs/development/python-modules/draftjs-exporter/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "draftjs-exporter";
-  version = "2.1.7";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     repo = "draftjs_exporter";
     owner = "springload";
-    rev = "v${version}";
-    sha256 = "sha256-tw0r9RnQdIwcY+pqnW8fcV0o2LzmxW0MZPn5drNgK80=";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-4MmCVRx350p6N9XqTZSo8ROI/OJ0s4aKSYH9+Oxgvf4=";
   };
 
   passthru.optional-dependencies = {
diff --git a/pkgs/development/python-modules/duo-client/default.nix b/pkgs/development/python-modules/duo-client/default.nix
index 088e9dc844cb..05f9f0c9a406 100644
--- a/pkgs/development/python-modules/duo-client/default.nix
+++ b/pkgs/development/python-modules/duo-client/default.nix
@@ -11,13 +11,13 @@
 
 buildPythonPackage rec {
   pname = "duo-client";
-  version = "4.7.1";
+  version = "5.0.1";
 
   src = fetchFromGitHub {
     owner = "duosecurity";
     repo = "duo_client_python";
     rev = "refs/tags/${version}";
-    hash = "sha256-nnKujvhOtuNnlFrbmYtD7L++S7DK0Qqrc0LyAVYe7Xg=";
+    hash = "sha256-G0XLZZaQTPD64WXN34wq2z+YtzECgtC2nJXzDxAlgyg=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/dynalite-devices/default.nix b/pkgs/development/python-modules/dynalite-devices/default.nix
index cb899bb04c07..7066271182ef 100644
--- a/pkgs/development/python-modules/dynalite-devices/default.nix
+++ b/pkgs/development/python-modules/dynalite-devices/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "dynalite-devices";
-  version = "0.1.48";
+  version = "0.47";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "ziv1234";
     repo = "python-dynalite-devices";
     rev = "refs/tags/v${version}";
-    hash = "sha256-i88aIsRNsToSceQdwfspJg+Y5MO5zC4O6EkyhrYR27g=";
+    hash = "sha256-kJo4e5vhgWzijLUhQd9VBVk1URpg9SXhOA60dJYashM=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/editables/default.nix b/pkgs/development/python-modules/editables/default.nix
index 0211a855b3b4..f3db3a96d26f 100644
--- a/pkgs/development/python-modules/editables/default.nix
+++ b/pkgs/development/python-modules/editables/default.nix
@@ -1,18 +1,24 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, flit-core
 , pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "editables";
-  version = "0.3";
+  version = "0.5";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-FnUk43c1jtHxN05hwmjw16S/fb0EbGVve0EM3hYWGxo=";
+    hash = "sha256-MJYn2bXErcDmaNjG+nusG6fIxdQVwtJ/YPCB+OgNHeI=";
   };
 
+  nativeBuildInputs = [
+    flit-core
+  ];
+
   nativeCheckInputs = [
     pytestCheckHook
   ];
diff --git a/pkgs/development/python-modules/einops/default.nix b/pkgs/development/python-modules/einops/default.nix
index 03c67d7ce527..a1e0b65aec20 100644
--- a/pkgs/development/python-modules/einops/default.nix
+++ b/pkgs/development/python-modules/einops/default.nix
@@ -3,16 +3,18 @@
 , chainer
 , fetchFromGitHub
 , hatchling
+, jupyter
 , nbconvert
 , numpy
 , parameterized
+, pillow
 , pytestCheckHook
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "einops";
-  version = "0.6.0";
+  version = "0.6.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -21,21 +23,22 @@ buildPythonPackage rec {
     owner = "arogozhnikov";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-/bnp8IhDxp8EB/PoW5Dz+7rOru0/odOrts84aq4qyJw=";
+    hash = "sha256-+TaxaxOc5jAm79tIK0NHZ58HgcgdCANrSo/602YaF8E=";
   };
 
   nativeBuildInputs = [ hatchling ];
 
   nativeCheckInputs = [
     chainer
+    jupyter
     nbconvert
     numpy
     parameterized
+    pillow
     pytestCheckHook
   ];
 
-  # No CUDA in sandbox
-  EINOPS_SKIP_CUPY = 1;
+  env.EINOPS_TEST_BACKENDS = "numpy,chainer";
 
   preCheck = ''
     export HOME=$(mktemp -d);
diff --git a/pkgs/development/python-modules/elasticsearch-dsl/default.nix b/pkgs/development/python-modules/elasticsearch-dsl/default.nix
index 2fe746ea7f38..e5bdc6571cc9 100644
--- a/pkgs/development/python-modules/elasticsearch-dsl/default.nix
+++ b/pkgs/development/python-modules/elasticsearch-dsl/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "elasticsearch-dsl";
-  version = "7.4.0";
+  version = "8.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c4a7b93882918a413b63bed54018a1685d7410ffd8facbc860ee7fd57f214a6d";
+    sha256 = "sha256-ZkEK34gfArigMuilsqPuCT/e7eS4FPvwTA9s4EmbdHI=";
   };
 
   propagatedBuildInputs = [ elasticsearch python-dateutil six ];
diff --git a/pkgs/development/python-modules/elasticsearch/default.nix b/pkgs/development/python-modules/elasticsearch/default.nix
index b8c25ce5ac31..a07ba8c6d188 100644
--- a/pkgs/development/python-modules/elasticsearch/default.nix
+++ b/pkgs/development/python-modules/elasticsearch/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage (rec {
   pname = "elasticsearch";
-  version = "7.16.3";
+  version = "8.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8adf8bc351ed55df7296be1009d38a1c999c0abc7d8700fa88533f1ad6087c5e";
+    sha256 = "sha256-0zZ/wBPgT8eq00mm3p+tHuBPttYnsOeJaqUFwS/eXgQ=";
   };
 
   # Check is disabled because running them destroy the content of the local cluster!
diff --git a/pkgs/development/python-modules/email-validator/default.nix b/pkgs/development/python-modules/email-validator/default.nix
index 76b5b6fbe34a..99ae071f4ae3 100644
--- a/pkgs/development/python-modules/email-validator/default.nix
+++ b/pkgs/development/python-modules/email-validator/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "email-validator";
-  version = "1.3.1";
+  version = "2.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -18,7 +18,7 @@ buildPythonPackage rec {
     owner = "JoshData";
     repo = "python-${pname}";
     rev = "refs/tags/v${version}";
-    hash = "sha256-JW6Yrotm3HjUOUtNFxRorkrJKjzuwIXwjpUuMWEyLV0=";
+    hash = "sha256-o7UREa+IBiFjmqx0p+4XJCcoHQ/R6r2RtoezEcWvgbg=";
   };
 
   propagatedBuildInputs = [
@@ -30,18 +30,10 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
-  disabledTests = [
-    # fails with dns.resolver.NoResolverConfiguration due to network sandboxing
-    "test_deliverability_no_records"
-    "test_deliverability_found"
-    "test_deliverability_fails"
-    "test_deliverability_dns_timeout"
-    "test_email_example_reserved_domain"
-    "test_main_single_good_input"
-    "test_main_multi_input"
-    "test_main_input_shim"
-    "test_validate_email__with_caching_resolver"
-    "test_validate_email__with_configured_resolver"
+  disabledTestPaths = [
+    # dns.resolver.NoResolverConfiguration: cannot open /etc/resolv.conf
+    "tests/test_deliverability.py"
+    "tests/test_main.py"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/envisage/default.nix b/pkgs/development/python-modules/envisage/default.nix
index c49579a03fe1..74f70ee4979b 100644
--- a/pkgs/development/python-modules/envisage/default.nix
+++ b/pkgs/development/python-modules/envisage/default.nix
@@ -13,25 +13,16 @@
 
 buildPythonPackage rec {
   pname = "envisage";
-  version = "6.1.0";
-  format = "setuptools";
+  version = "7.0.3";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-AATsUNcYLB4vtyvuooAMDZx8p5fayijb6yJoUKTCW40=";
+    hash = "sha256-97GviL86j/8qmsbja7SN6pkp4/YSIEz+lK7WKwMWyeM=";
   };
 
-  patches = [
-    # TODO: remove on next release
-    (fetchpatch {
-      name = "fix-mistake-in-menu-group-specification.patch";
-      url = "https://github.com/enthought/envisage/commit/f23ea3864a5f6ffca665d47dec755992e062029b.patch";
-      hash = "sha256-l4CWB4jRkSmoTDoV8CtP2w87Io2cLINKfOSaSPy7cXE=";
-    })
-  ];
-
   # for the optional dependency ipykernel, only versions < 6 are
   # supported, so it's not included in the tests, and not propagated
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/eradicate/default.nix b/pkgs/development/python-modules/eradicate/default.nix
index cddeddfef8c2..511f8d17ecbe 100644
--- a/pkgs/development/python-modules/eradicate/default.nix
+++ b/pkgs/development/python-modules/eradicate/default.nix
@@ -7,7 +7,7 @@
 
 buildPythonPackage rec {
   pname = "eradicate";
-  version = "2.2.0";
+  version = "2.3.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -16,7 +16,7 @@ buildPythonPackage rec {
     owner = "wemake-services";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-pVjvzW3UVeLMLLYcU0SIE19GEHFmouoA/JKSweTZSGo=";
+    hash = "sha256-ikiqNe1a+OeRraNBbtAx6v3LsTajWlgxm4wR2Tcbmjk=";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/execnet/default.nix b/pkgs/development/python-modules/execnet/default.nix
index 528e849290db..eb184c180d5b 100644
--- a/pkgs/development/python-modules/execnet/default.nix
+++ b/pkgs/development/python-modules/execnet/default.nix
@@ -2,31 +2,22 @@
 , buildPythonPackage
 , isPyPy
 , fetchPypi
-, fetchpatch
+, hatchling
+, hatch-vcs
+, gevent
 , pytestCheckHook
-, setuptools-scm
-, apipkg
-, py
 }:
 
 buildPythonPackage rec {
   pname = "execnet";
-  version = "1.9.0";
-  format = "setuptools";
+  version = "2.0.2";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8f694f3ba9cc92cab508b152dcfe322153975c29bda272e2fd7f3f00f36e47c5";
+    hash = "sha256-zFm8RCN0L9ca0icSLrDdRNtR77PcQJW0WsmgjHcAlq8=";
   };
 
-  patches = [
-    (fetchpatch {
-      # Fix test compat with pytest 7.2.0
-      url = "https://github.com/pytest-dev/execnet/commit/c0459b92bc4a42b08281e69b8802d24c5d3415d4.patch";
-      hash = "sha256-AT2qr7AUpFXcPps525U63A7ARcEVmf0HM6ya73Z2vi0=";
-    })
-  ];
-
   postPatch = ''
     # remove vbox tests
     rm testing/test_termination.py
@@ -38,21 +29,27 @@ buildPythonPackage rec {
   '';
 
   nativeBuildInputs = [
-    setuptools-scm
-  ];
-
-  propagatedBuildInputs = [
-    apipkg
+    hatchling
+    hatch-vcs
   ];
 
   # sometimes crashes with: OSError: [Errno 9] Bad file descriptor
   doCheck = !isPyPy;
 
   nativeCheckInputs = [
-    py # no longer required with 1.10.0
+    gevent
     pytestCheckHook
   ];
 
+  disabledTests = [
+    # gets stuck
+    "test_popen_io"
+    # OSError: [Errno 9] Bad file descriptor
+    "test_stdouterrin_setnull"
+  ];
+
+  pytestFlagsArray = [ "-vvv" ];
+
   pythonImportsCheck = [
     "execnet"
   ];
diff --git a/pkgs/development/python-modules/ezyrb/default.nix b/pkgs/development/python-modules/ezyrb/default.nix
index f6d9ecaf876a..aaeda3f40e73 100644
--- a/pkgs/development/python-modules/ezyrb/default.nix
+++ b/pkgs/development/python-modules/ezyrb/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "ezyrb";
-  version = "1.3.0.post2305";
+  version = "1.3.0.post2309";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "mathLab";
     repo = "EZyRB";
     rev = "refs/tags/v${version}";
-    hash = "sha256-uYwLz5NY+8lO8hZnAhqv+5PlcCSm6OOFWra47pwQhxg=";
+    hash = "sha256-9g7FCyGZc9TDR9MummM1KJJZs31Oo50N/U6HjKM90Nw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/faker/default.nix b/pkgs/development/python-modules/faker/default.nix
index 7e26264bc3e7..4f0a1e701352 100644
--- a/pkgs/development/python-modules/faker/default.nix
+++ b/pkgs/development/python-modules/faker/default.nix
@@ -12,12 +12,12 @@
 
 buildPythonPackage rec {
   pname = "faker";
-  version = "17.3.0";
+  version = "19.6.1";
 
   src = fetchPypi {
     pname = "Faker";
     inherit version;
-    hash = "sha256-JrKGSlMyCU8sfzlo3uurzmm+Oe1dtNvyK0+guj0aza4=";
+    hash = "sha256-XWt4gLO+pwgHXd+Rk4QkRT8HBTpZ+PoEU8GHDfb/MpI=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/fastapi/default.nix b/pkgs/development/python-modules/fastapi/default.nix
index c0c4b36d3439..553f313bd0b6 100644
--- a/pkgs/development/python-modules/fastapi/default.nix
+++ b/pkgs/development/python-modules/fastapi/default.nix
@@ -1,27 +1,41 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, pydantic
+, pythonOlder
+
+# build-system
+, hatchling
+
+# dependencies
 , starlette
-, pytestCheckHook
-, pytest-asyncio
-, aiosqlite
-, databases
+, pydantic
+, typing-extensions
+
+# tests
+, dirty-equals
 , flask
-, httpx
-, hatchling
-, orjson
 , passlib
-, peewee
+, pytest-asyncio
+, pytestCheckHook
 , python-jose
 , sqlalchemy
 , trio
-, pythonOlder
+
+# optional-dependencies
+, httpx
+, jinja2
+, python-multipart
+, itsdangerous
+, pyyaml
+, ujson
+, orjson
+, email-validator
+, uvicorn
 }:
 
 buildPythonPackage rec {
   pname = "fastapi";
-  version = "0.95.2";
+  version = "0.103.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -30,40 +44,43 @@ buildPythonPackage rec {
     owner = "tiangolo";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-wD39CqUZOgwpG/NEGz/pXgQsadzUoM/elxfEXthOlHo=";
+    hash = "sha256-2J8c3S4Ca+c5bI0tyjMJArJKux9qPmu+ohqve5PhSGI=";
   };
 
   nativeBuildInputs = [
     hatchling
   ];
 
-  postPatch = ''
-    substituteInPlace pyproject.toml \
-      --replace '"databases[sqlite] >=0.3.2,<0.7.0",' "" \
-      --replace "starlette==" "starlette>="
-  '';
-
   propagatedBuildInputs = [
     starlette
     pydantic
+    typing-extensions
   ];
 
-  nativeCheckInputs = [
-    aiosqlite
-    # databases FIXME incompatible with SQLAlchemy 2.0
-    flask
+  passthru.optional-dependencies.all = [
     httpx
+    jinja2
+    python-multipart
+    itsdangerous
+    pyyaml
+    ujson
     orjson
+    email-validator
+    uvicorn
+    # pydantic-settings
+    # pydantic-extra-types
+  ] ++ uvicorn.optional-dependencies.standard;
+
+  nativeCheckInputs = [
+    dirty-equals
+    flask
     passlib
-    peewee
-    python-jose
     pytestCheckHook
     pytest-asyncio
-    sqlalchemy
+    python-jose
     trio
-  ]
-  ++ passlib.optional-dependencies.bcrypt
-  ++ pydantic.optional-dependencies.email;
+    sqlalchemy
+  ] ++ passthru.optional-dependencies.all;
 
   pytestFlagsArray = [
     # ignoring deprecation warnings to avoid test failure from
@@ -92,6 +109,8 @@ buildPythonPackage rec {
     "test_trace"
     # Unexpected number of warnings caught
     "test_warn_duplicate_operation_id"
+    # assert state["except"] is True
+    "test_dependency_gets_exception"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/fastavro/default.nix b/pkgs/development/python-modules/fastavro/default.nix
index 85b9eecb57e8..54a475c08b01 100644
--- a/pkgs/development/python-modules/fastavro/default.nix
+++ b/pkgs/development/python-modules/fastavro/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "fastavro";
-  version = "1.8.2";
+  version = "1.8.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -24,7 +24,7 @@ buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-UPnWVYiZJdP6r7Bm1H9DMXpLi26c9tpXeEkLXVJxWdM=";
+    hash = "sha256-W+fFZAQU7W6gDqB6LOrG8se6mBATFZWmepTt1HSphbE=";
   };
 
   preBuild = ''
diff --git a/pkgs/development/python-modules/faster-whisper/default.nix b/pkgs/development/python-modules/faster-whisper/default.nix
index 563c4b7e4f48..b632f9f28772 100644
--- a/pkgs/development/python-modules/faster-whisper/default.nix
+++ b/pkgs/development/python-modules/faster-whisper/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "faster-whisper";
-  version = "0.7.1";
+  version = "0.8.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "guillaumekln";
     repo = "faster-whisper";
-    rev = "v${version}";
-    hash = "sha256-NTk0S+dMChygnC7Wix62AFO4NNSPJuKXyqoEyWiQhII=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-MVcopBIwmgoklVROfIp35uvFgNQDVDNDfJwITV9sLSQ=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/filelock/default.nix b/pkgs/development/python-modules/filelock/default.nix
index 3215a9010882..74cd6e727dbd 100644
--- a/pkgs/development/python-modules/filelock/default.nix
+++ b/pkgs/development/python-modules/filelock/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "filelock";
-  version = "3.12.2";
+  version = "3.12.4";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ACdAUY2KpZomsMduEPuMbhXq6CXTS2/fZwMz/XuTjYE=";
+    hash = "sha256-Lm8knx82VCkWBuBGsJ8f1erDmzYGZMJ/Wq0HIBL4vL0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/finvizfinance/default.nix b/pkgs/development/python-modules/finvizfinance/default.nix
index 064b8291b8ce..1491b254e835 100644
--- a/pkgs/development/python-modules/finvizfinance/default.nix
+++ b/pkgs/development/python-modules/finvizfinance/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "finvizfinance";
-  version = "0.14.5";
+  version = "0.14.6";
   format = "setuptools";
 
   disabled = pythonOlder "3.5";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "lit26";
     repo = "finvizfinance";
     rev = "refs/tags/v${version}";
-    hash = "sha256-yhOa/CS+9UdI+TVMObBsOqIp9XggMJvNjteSMa5DJcM=";
+    hash = "sha256-YRdOj0n2AUGRicQCENoXWad5MnRyTqQFxqisTFnClac=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/flake8/default.nix b/pkgs/development/python-modules/flake8/default.nix
index 860f449fd8b3..4a05efc146ba 100644
--- a/pkgs/development/python-modules/flake8/default.nix
+++ b/pkgs/development/python-modules/flake8/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "flake8";
-  version = "6.0.0";
+  version = "6.1.0";
 
   disabled = pythonOlder "3.8";
 
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "PyCQA";
     repo = "flake8";
     rev = version;
-    hash = "sha256-dN9LlLpQ/ZoVIFrAQ1NxMvsHqWsgdJVLUIAFwkheEL4=";
+    hash = "sha256-N8bufkn1CUREHusVc2mQ1YlNr7lrESEZGmlN68bhgbE=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/flasgger/default.nix b/pkgs/development/python-modules/flasgger/default.nix
new file mode 100644
index 000000000000..4bb5e9fe30d9
--- /dev/null
+++ b/pkgs/development/python-modules/flasgger/default.nix
@@ -0,0 +1,63 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, fetchpatch
+
+# dependencies
+, flask
+, jsonschema
+, mistune
+, pyyaml
+, six
+, werkzeug
+
+# tests
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "flasgger";
+  version = "0.9.5";
+  format = "setuptools";
+
+  src = fetchFromGitHub {
+    owner = "flasgger";
+    repo = "flasgger";
+    rev = version;
+    hash = "sha256-cYFMKZxpi69gVWqyZUltCL0ZwcfIABNsJKqAhN2TTSg=";
+  };
+
+  patches = [
+    (fetchpatch {
+      # flask 2.3 compat
+      url = "https://github.com/flasgger/flasgger/commit/ab77be7c6de1d4b361f0eacfa37290239963f890.patch";
+      hash = "sha256-ZbE5pPUP23nZAP/qcdeWkwzrZgqJSRES7oFta8U1uVQ=";
+    })
+  ];
+
+  propagatedBuildInputs = [
+    flask
+    jsonschema
+    mistune
+    pyyaml
+    six
+    werkzeug
+  ];
+
+  pythonImportsCheck = [
+    "flasgger"
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
+  doCheck = false; # missing flex dependency
+
+  meta = with lib; {
+    description = "Easy OpenAPI specs and Swagger UI for your Flask API";
+    homepage = "https://github.com/flasgger/flasgger/";
+    license = licenses.mit;
+    maintainers = with maintainers; [ ];
+  };
+}
diff --git a/pkgs/development/python-modules/flask-appbuilder/default.nix b/pkgs/development/python-modules/flask-appbuilder/default.nix
index eaf132e943c3..6309e0ddd2c0 100644
--- a/pkgs/development/python-modules/flask-appbuilder/default.nix
+++ b/pkgs/development/python-modules/flask-appbuilder/default.nix
@@ -27,7 +27,7 @@
 
 buildPythonPackage rec {
   pname = "flask-appbuilder";
-  version = "4.3.1";
+  version = "4.3.6";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -35,7 +35,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "Flask-AppBuilder";
     inherit version;
-    hash = "sha256-FP92HEGOsufHtaIySqDiScD3QUu3iQhWdtvkOecUvuI=";
+    hash = "sha256-jKlxD6fScEdH0ZXhG0h9RaVx9AVZ2DmdnV36QuofPHg=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/flask-limiter/default.nix b/pkgs/development/python-modules/flask-limiter/default.nix
index 1305234e43f7..ff532ffd12d9 100644
--- a/pkgs/development/python-modules/flask-limiter/default.nix
+++ b/pkgs/development/python-modules/flask-limiter/default.nix
@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "flask-limiter";
-  version = "3.3.1";
+  version = "3.5.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     owner = "alisaifee";
     repo = "flask-limiter";
     rev = "refs/tags/${version}";
-    hash = "sha256-UtmMd180bwFm426YevARq6r7DL182dI7dGAUPFKLWuM=";
+    hash = "sha256-ZaHw8+l1sBCeNj0tYdUw1f4BUvEj6plOSoH0GUzNg+0=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/flask-login/default.nix b/pkgs/development/python-modules/flask-login/default.nix
index c1b8c15bea03..1caf53c7a2d8 100644
--- a/pkgs/development/python-modules/flask-login/default.nix
+++ b/pkgs/development/python-modules/flask-login/default.nix
@@ -36,10 +36,20 @@ buildPythonPackage rec {
     semantic-version
   ];
 
-  disabledTests = lib.optionals (pythonAtLeast "3.10") [
+  disabledTests = [
+    # https://github.com/maxcountryman/flask-login/issues/747
+    "test_remember_me_accepts_duration_as_int"
+    "test_remember_me_custom_duration_uses_custom_cookie"
+    "test_remember_me_refresh_every_request"
+    "test_remember_me_uses_custom_cookie_parameters"
+  ] ++ lib.optionals (pythonAtLeast "3.10") [
     "test_hashable"
   ];
 
+  pytestFlagsArray = [
+    "-W" "ignore::DeprecationWarning"
+  ];
+
   pythonImportsCheck = [
     "flask_login"
   ];
diff --git a/pkgs/development/python-modules/flask-migrate/default.nix b/pkgs/development/python-modules/flask-migrate/default.nix
index 819c9d239231..a7a5da621630 100644
--- a/pkgs/development/python-modules/flask-migrate/default.nix
+++ b/pkgs/development/python-modules/flask-migrate/default.nix
@@ -20,7 +20,7 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "miguelgrinberg";
     repo = "Flask-Migrate";
-    rev = "v${version}";
+    rev = "refs/tags/v${version}";
     hash = "sha256-fdnoX7ypTpH2mQ+7Xuhzdh706Of7PIVhHQGVbe0jv1s=";
   };
 
diff --git a/pkgs/development/python-modules/flask-restful/default.nix b/pkgs/development/python-modules/flask-restful/default.nix
index 9db70e044e19..68072b7ddde9 100644
--- a/pkgs/development/python-modules/flask-restful/default.nix
+++ b/pkgs/development/python-modules/flask-restful/default.nix
@@ -48,6 +48,9 @@ buildPythonPackage rec {
   disabledTests = [
     # Broke in flask 2.2 upgrade
     "test_exception_header_forwarded"
+    # Broke in werkzeug 2.3 upgrade
+    "test_media_types_method"
+    "test_media_types_q"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/flask-restx/default.nix b/pkgs/development/python-modules/flask-restx/default.nix
index cdee90d222a6..42132b2da539 100644
--- a/pkgs/development/python-modules/flask-restx/default.nix
+++ b/pkgs/development/python-modules/flask-restx/default.nix
@@ -58,6 +58,12 @@ buildPythonPackage rec {
     "--deselect=tests/test_logging.py::LoggingTest::test_override_app_level"
   ];
 
+  disabledTests = [
+    # broken in werkzeug 2.3 upgrade
+    "test_media_types_method"
+    "test_media_types_q"
+  ];
+
   pythonImportsCheck = [
     "flask_restx"
   ];
diff --git a/pkgs/development/python-modules/flask-security-too/default.nix b/pkgs/development/python-modules/flask-security-too/default.nix
index e18cc8579ba9..529a1a63913a 100644
--- a/pkgs/development/python-modules/flask-security-too/default.nix
+++ b/pkgs/development/python-modules/flask-security-too/default.nix
@@ -46,7 +46,7 @@
 
 buildPythonPackage rec {
   pname = "flask-security-too";
-  version = "5.1.2";
+  version = "5.3.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -54,7 +54,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "Flask-Security-Too";
     inherit version;
-    hash = "sha256-lZzm43m30y+2qjxNddFEeg9HDlQP9afq5VtuR25zaLc=";
+    hash = "sha256-n12DCRPqxm8YhFeVrl99BEvdDYNq6rzP662rain3k1Q=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/flask-sqlalchemy/default.nix b/pkgs/development/python-modules/flask-sqlalchemy/default.nix
index 550d9adf416f..7146c38e5a30 100644
--- a/pkgs/development/python-modules/flask-sqlalchemy/default.nix
+++ b/pkgs/development/python-modules/flask-sqlalchemy/default.nix
@@ -3,7 +3,7 @@
 , fetchPypi
 , flask
 , mock
-, pdm-pep517
+, flit-core
 , pytestCheckHook
 , pythonOlder
 , sqlalchemy
@@ -11,19 +11,19 @@
 
 buildPythonPackage rec {
   pname = "flask-sqlalchemy";
-  version = "3.0.3";
+  version = "3.1.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.9";
 
   src = fetchPypi {
-    pname = "Flask-SQLAlchemy";
+    pname = "flask_sqlalchemy";
     inherit version;
-    hash = "sha256-J2QzXzydfr3J7WBEr6+Yqun6UNegdM71Xd4wfslZA+w=";
+    hash = "sha256-5LaLuIGALdoafYeLL8hMBtHuV/tAuHTT3Jfav6NrgxI=";
   };
 
   nativeBuildInputs = [
-    pdm-pep517
+    flit-core
   ];
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/flask-wtf/default.nix b/pkgs/development/python-modules/flask-wtf/default.nix
index 036b4dd5a05e..a106945df060 100644
--- a/pkgs/development/python-modules/flask-wtf/default.nix
+++ b/pkgs/development/python-modules/flask-wtf/default.nix
@@ -8,6 +8,7 @@
 , wtforms
 , email-validator
 , pytestCheckHook
+, setuptools
 }:
 
 buildPythonPackage rec {
@@ -25,6 +26,7 @@ buildPythonPackage rec {
 
   nativeBuildInputs = [
     hatchling
+    setuptools
   ];
 
   propagatedBuildInputs = [
@@ -41,6 +43,10 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
+  pytestFlagsArray = [
+    "-W" "ignore::DeprecationWarning"
+  ];
+
   meta = with lib; {
     description = "Simple integration of Flask and WTForms.";
     license = licenses.bsd3;
diff --git a/pkgs/development/python-modules/flask/default.nix b/pkgs/development/python-modules/flask/default.nix
index b7914ad3777e..154625f6c52a 100644
--- a/pkgs/development/python-modules/flask/default.nix
+++ b/pkgs/development/python-modules/flask/default.nix
@@ -2,7 +2,9 @@
 , buildPythonPackage
 , fetchPypi
 , asgiref
+, blinker
 , click
+, flit-core
 , importlib-metadata
 , itsdangerous
 , jinja2
@@ -19,16 +21,21 @@
 
 buildPythonPackage rec {
   pname = "flask";
-  version = "2.2.5";
+  version = "2.3.3";
+  format = "pyproject";
 
   src = fetchPypi {
-    pname = "Flask";
-    inherit version;
-    hash = "sha256-7e6bCn/yZiG9WowQ/0hK4oc3okENmbC7mmhQx/uXeqA=";
+    inherit pname version;
+    hash = "sha256-CcNHqSqn/0qOfzIGeV8w2CZlS684uHPQdEzVccpgnvw=";
   };
 
+  nativeBuildInputs = [
+    flit-core
+  ];
+
   propagatedBuildInputs = [
     click
+    blinker
     itsdangerous
     jinja2
     werkzeug
diff --git a/pkgs/development/python-modules/flax/default.nix b/pkgs/development/python-modules/flax/default.nix
index bea9667a1a18..0a6b086fe516 100644
--- a/pkgs/development/python-modules/flax/default.nix
+++ b/pkgs/development/python-modules/flax/default.nix
@@ -19,13 +19,13 @@
 
 buildPythonPackage rec {
   pname = "flax";
-  version = "0.6.5";
+  version = "0.7.4";
 
   src = fetchFromGitHub {
     owner = "google";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-Vv68BK83gTIKj0r9x+twdhqmRYziD0vxQCdHkYSeTak=";
+    hash = "sha256-i48omag/1Si3mCCGfsUD9qeejyeCLWzvvwKJqH8vm8k=";
   };
 
   nativeBuildInputs = [ jaxlib pythonRelaxDepsHook ];
diff --git a/pkgs/development/python-modules/flet-core/default.nix b/pkgs/development/python-modules/flet-core/default.nix
index ed55629dca03..bf1e8b2d693a 100644
--- a/pkgs/development/python-modules/flet-core/default.nix
+++ b/pkgs/development/python-modules/flet-core/default.nix
@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "flet-core";
-  version = "0.7.4";
+  version = "0.10.1";
   format = "pyproject";
 
   src = fetchPypi {
     pname = "flet_core";
     inherit version;
-    hash = "sha256-8WG7odYiGrew4GwD+MUuzQPmDn7V/GmocBproqsbCNw=";
+    hash = "sha256-YLtHnKBlXkUJJkQzxnDkfl6+gSGm05GXYPGEU3XO/jI=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/flet/default.nix b/pkgs/development/python-modules/flet/default.nix
index 4c41e5972600..c6541372d66b 100644
--- a/pkgs/development/python-modules/flet/default.nix
+++ b/pkgs/development/python-modules/flet/default.nix
@@ -19,12 +19,12 @@
 
 buildPythonPackage rec {
   pname = "flet";
-  version = "0.7.4";
+  version = "0.10.1";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-vFPjN+5wIygtP035odAOSdF9PQe6eXz6CJ9Q0d8ScFo=";
+    hash = "sha256-Ogy4F9/beSb3GCpwPsN+8hsVroRoHTSojqg+5eXwcRI=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/fontmake/default.nix b/pkgs/development/python-modules/fontmake/default.nix
index 1f684becb94c..a6bd37c0153e 100644
--- a/pkgs/development/python-modules/fontmake/default.nix
+++ b/pkgs/development/python-modules/fontmake/default.nix
@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "fontmake";
-  version = "3.5.1";
+  version = "3.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-njJArNq7nhdoq0Si3+RUDE+VJSwuUvk+e7WeuNaluK0=";
+    hash = "sha256-Nb09/BRPR0H3rHrbDIhcrgOyJp55KCIdPvUr/vh2Z0U=";
     extension = "zip";
   };
 
diff --git a/pkgs/development/python-modules/fonttools/default.nix b/pkgs/development/python-modules/fonttools/default.nix
index 845ca18e4a62..3c167debba37 100644
--- a/pkgs/development/python-modules/fonttools/default.nix
+++ b/pkgs/development/python-modules/fonttools/default.nix
@@ -24,7 +24,8 @@
 
 buildPythonPackage rec {
   pname = "fonttools";
-  version = "4.38.0";
+  version = "4.42.1";
+  format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
@@ -32,7 +33,7 @@ buildPythonPackage rec {
     owner  = pname;
     repo   = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-cdZI2kwR3zzS6eiiXGpeHIp+kgPCPEsTOSTV60pODTM=";
+    hash = "sha256-fcFFJi9Hr0m74LwFIhhhm/bMfxepAvg4/ymU53MmsPg=";
   };
 
   nativeBuildInputs = [ setuptools-scm ];
@@ -60,6 +61,7 @@ buildPythonPackage rec {
   ] ++ lib.concatLists (lib.attrVals ([
     "woff"
     "interpolatable"
+    "ufo"
   ] ++ lib.optionals (!skia-pathops.meta.broken) [
     "pathops" # broken
   ] ++ [
diff --git a/pkgs/development/python-modules/formulaic/default.nix b/pkgs/development/python-modules/formulaic/default.nix
index 3cfe44c55d53..fcb8ddc1b00b 100644
--- a/pkgs/development/python-modules/formulaic/default.nix
+++ b/pkgs/development/python-modules/formulaic/default.nix
@@ -17,15 +17,15 @@
 
 buildPythonPackage rec {
   pname = "formulaic";
-  version = "0.5.2";
+  version = "0.6.4";
 
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "matthewwardrop";
     repo = "formulaic";
-    rev = "v${version}";
-    hash = "sha256-sIvHTuUS/nkcDjRgZCoEOY2negIOsarzH0PeXJsavWc=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-lpza5FDO/QOsiLYdxNT1o62lHfFeD6YahFz/zgH3K0I=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/frozenlist/default.nix b/pkgs/development/python-modules/frozenlist/default.nix
index 957e9f5d057a..06ff0d1c7dcc 100644
--- a/pkgs/development/python-modules/frozenlist/default.nix
+++ b/pkgs/development/python-modules/frozenlist/default.nix
@@ -4,33 +4,32 @@
 , fetchFromGitHub
 , pytestCheckHook
 , pythonOlder
+, setuptools
+, wheel
 }:
 
 buildPythonPackage rec {
   pname = "frozenlist";
-  version = "1.3.3";
-  format = "setuptools";
+  version = "1.4.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "aio-libs";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-lJWRdXvuzyvJwNSpv0+ojY4rwws3jwDtlLOqYyLPrZc=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-sI6jnrTxDbW0sNVodpCjBnA31VAAmunwMp9s8GkoHGI=";
   };
 
   nativeBuildInputs = [
     cython
-  ];
-
-  nativeCheckInputs = [
-    pytestCheckHook
+    setuptools
+    wheel
   ];
 
   postPatch = ''
-    substituteInPlace pytest.ini \
-      --replace "--cov=frozenlist" ""
+    sed -i "/addopts =/d" pytest.ini
   '';
 
   preBuild = ''
@@ -41,6 +40,10 @@ buildPythonPackage rec {
     "frozenlist"
   ];
 
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
   meta = with lib; {
     description = "Python module for list-like structure";
     homepage = "https://github.com/aio-libs/frozenlist";
diff --git a/pkgs/development/python-modules/fsspec/default.nix b/pkgs/development/python-modules/fsspec/default.nix
index e158692e9af7..89d493bc87d6 100644
--- a/pkgs/development/python-modules/fsspec/default.nix
+++ b/pkgs/development/python-modules/fsspec/default.nix
@@ -29,7 +29,7 @@
 
 buildPythonPackage rec {
   pname = "fsspec";
-  version = "2023.4.0";
+  version = "2023.9.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -38,7 +38,7 @@ buildPythonPackage rec {
     owner = "fsspec";
     repo = "filesystem_spec";
     rev = version;
-    hash = "sha256-qkvhmXJNxA8v+kbZ6ulxJAQr7ReQpb+JkbhOUnL59KM=";
+    hash = "sha256-1ai+/8akUlP9kfzSKYEpDnobBfUC6EAPFPVVxh4jb/0=";
   };
 
   propagatedBuildInputs = [
@@ -146,6 +146,11 @@ buildPythonPackage rec {
     "test_touch"
   ];
 
+  disabledTestPaths = [
+    # JSON decoding issues
+    "fsspec/implementations/tests/test_dbfs.py"
+  ];
+
   pythonImportsCheck = [
     "fsspec"
   ];
diff --git a/pkgs/development/python-modules/fugashi/default.nix b/pkgs/development/python-modules/fugashi/default.nix
index 6a8c1ac9db2d..264771ed5a4b 100644
--- a/pkgs/development/python-modules/fugashi/default.nix
+++ b/pkgs/development/python-modules/fugashi/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "fugashi";
-  version = "1.2.1";
+  version = "1.3.0";
   format = "setuptools";
   disabled = pythonOlder "3.7";
 
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "polm";
     repo = "fugashi";
     rev = "refs/tags/v${version}";
-    hash = "sha256-VDqRhJiNDbKFE284EAUS0d5T9cl8kgyHjh+r/HjjDY8=";
+    hash = "sha256-4i7Q+TtXTQNSJ1EIcS8KHrVPdCJAgZh86Y6lB8772XU=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/gentools/default.nix b/pkgs/development/python-modules/gentools/default.nix
index d3f45cdea7f0..c53dd68fb815 100644
--- a/pkgs/development/python-modules/gentools/default.nix
+++ b/pkgs/development/python-modules/gentools/default.nix
@@ -4,14 +4,14 @@
 
 buildPythonPackage rec {
   pname = "gentools";
-  version = "1.1.0";
+  version = "1.2.1";
 
   # Pypi doesn't ship the tests, so we fetch directly from GitHub
   src = fetchFromGitHub {
     owner = "ariebovenberg";
     repo = pname;
-    rev = "v${version}";
-    sha256 = "1sm6cqi7fv2k3pc68r7wvvjjz8y6cjmz8bvxgqfa4v4wxibwnwrl";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-RBUIji3FOIRjfp4t7zBAVSeiWaYufz4ID8nTWmhDkf8=";
   };
 
   propagatedBuildInputs =
diff --git a/pkgs/development/python-modules/geoalchemy2/default.nix b/pkgs/development/python-modules/geoalchemy2/default.nix
index d216f43f76ac..c29d6d4bec09 100644
--- a/pkgs/development/python-modules/geoalchemy2/default.nix
+++ b/pkgs/development/python-modules/geoalchemy2/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "geoalchemy2";
-  version = "0.13.3";
+  version = "0.14.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -21,7 +21,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "GeoAlchemy2";
     inherit version;
-    hash = "sha256-2Fp96qmiMJAXM/dBnWv/VnS4cwZR3hoH8rZCOqSSXQk=";
+    hash = "sha256-Ygsxy/l6NoskhtvPzTbaIIGCfpM9QWO8uUIEO3m1Reg=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/gevent/default.nix b/pkgs/development/python-modules/gevent/default.nix
index b21e40c7a600..938cb99cf8fa 100644
--- a/pkgs/development/python-modules/gevent/default.nix
+++ b/pkgs/development/python-modules/gevent/default.nix
@@ -1,5 +1,6 @@
 { lib
 , fetchPypi
+, fetchpatch
 , buildPythonPackage
 , isPyPy
 , python
@@ -7,6 +8,7 @@
 , cffi
 , cython_3
 , greenlet
+, importlib-metadata
 , setuptools
 , wheel
 , zope_event
@@ -26,6 +28,15 @@ buildPythonPackage rec {
     hash = "sha256-HKAdoXbuN7NSeicC99QNvJ/7jPx75aA7+k+e7EXlXEY=";
   };
 
+  patches = [
+    # Replace deprecated pkg_resources with importlib-metadata
+    (fetchpatch {
+      url = "https://github.com/gevent/gevent/commit/bd96d8e14dc99f757de22ab4bb98439f912dab1e.patch";
+      hash = "sha256-Y+cxIScuEgAVYmmxBJ8OI+JuJ4G+iiROTcRdWglo3l0=";
+      includes = [ "src/gevent/events.py" ];
+    })
+  ];
+
   nativeBuildInputs = [
     cython_3
     setuptools
@@ -39,6 +50,7 @@ buildPythonPackage rec {
   ];
 
   propagatedBuildInputs = [
+    importlib-metadata
     zope_event
     zope_interface
   ] ++ lib.optionals (!isPyPy) [
@@ -50,6 +62,7 @@ buildPythonPackage rec {
 
   pythonImportsCheck = [
     "gevent"
+    "gevent.events"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/glean-parser/default.nix b/pkgs/development/python-modules/glean-parser/default.nix
index 71ff271a1419..7ab2855d8d73 100644
--- a/pkgs/development/python-modules/glean-parser/default.nix
+++ b/pkgs/development/python-modules/glean-parser/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "glean-parser";
-  version = "7.2.1";
+  version = "9.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "glean_parser";
     inherit version;
-    hash = "sha256-EUlqwAT+QhuRTH+9yaHWIOSCHVbh2fZVI9OFjNuQe70=";
+    hash = "sha256-dwBKds89CaanZA4b5I6u01Q2s23joQp5SOCjdTXn/Xc=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/glfw/default.nix b/pkgs/development/python-modules/glfw/default.nix
index 12a2e40aecc5..db9f369a3497 100644
--- a/pkgs/development/python-modules/glfw/default.nix
+++ b/pkgs/development/python-modules/glfw/default.nix
@@ -7,7 +7,7 @@
 
 buildPythonPackage rec {
   pname = "glfw";
-  version = "2.5.9";
+  version = "2.6.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -16,7 +16,7 @@ buildPythonPackage rec {
     owner = "FlorianRhiem";
     repo = "pyGLFW";
     rev = "refs/tags/v${version}";
-    hash = "sha256-IQcUL+vVIjI/c8/GFkmw7kMmOJG/xAlxudgspC8pDvI=";
+    hash = "sha256-3K+mDSz4ifVYkUvhd2XDPbhh6UCY4y54YqNLoAYDsP0=";
   };
 
   # Patch path to GLFW shared object
diff --git a/pkgs/development/python-modules/google-api-python-client/default.nix b/pkgs/development/python-modules/google-api-python-client/default.nix
index 24bf908942fc..ecf2b36ab9db 100644
--- a/pkgs/development/python-modules/google-api-python-client/default.nix
+++ b/pkgs/development/python-modules/google-api-python-client/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "google-api-python-client";
-  version = "2.97.0";
+  version = "2.99.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-SCdykYlIdqHKftQSfgVegfgeY0PO0bVEpyAK4sEZ3Nc=";
+    hash = "sha256-5zP9DyyHk7GgANXmmsgbG57AZltEW37YO9u7ADiXMwY=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/google-auth-oauthlib/default.nix b/pkgs/development/python-modules/google-auth-oauthlib/default.nix
index 29adb27c72bf..2a24f4c04b03 100644
--- a/pkgs/development/python-modules/google-auth-oauthlib/default.nix
+++ b/pkgs/development/python-modules/google-auth-oauthlib/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "google-auth-oauthlib";
-  version = "1.0.0";
+  version = "1.1.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-43UGSWSCC0ciGn4bfuH9dwUbYyPD+ePhl4X3irZ+z8U=";
+    hash = "sha256-g+qMOwiB5FN5C6/0RI6KYRKsh3jR3p2gtoAQuEOTevs=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/google-auth/default.nix b/pkgs/development/python-modules/google-auth/default.nix
index 13f0ea961f0d..4785bed59fb3 100644
--- a/pkgs/development/python-modules/google-auth/default.nix
+++ b/pkgs/development/python-modules/google-auth/default.nix
@@ -5,6 +5,7 @@
 , buildPythonPackage
 , cachetools
 , cryptography
+, fetchpatch
 , fetchPypi
 , flask
 , freezegun
@@ -37,6 +38,18 @@ buildPythonPackage rec {
     hash = "sha256-so6ASOV3J+fPDlvY5ydrISrvR2ZUoJURNUqoJ1O0XGY=";
   };
 
+  patches = [
+    # Although the migration to urllib3-2.0.0 is incomplete,
+    # the discussion in the following PR has addressed the concerns.
+    # https://github.com/googleapis/google-auth-library-python/pull/1290
+    (fetchpatch {
+      name = "support-urllib3_2.patch";
+      url = "https://github.com/googleapis/google-auth-library-python/commit/9ed006d02d7c9de3e6898ee819648c2fd3367c1d.patch";
+      hash = "sha256-64g0GzZeyO8l/s1jqfsogr8pTOBbG9xfp/UeVZNA4q8=";
+      includes = [ "google/auth/transport/urllib3.py" ];
+    })
+  ];
+
   propagatedBuildInputs = [
     cachetools
     pyasn1-modules
diff --git a/pkgs/development/python-modules/googleapis-common-protos/default.nix b/pkgs/development/python-modules/googleapis-common-protos/default.nix
index dbf098fae7be..64dc4d2c7182 100644
--- a/pkgs/development/python-modules/googleapis-common-protos/default.nix
+++ b/pkgs/development/python-modules/googleapis-common-protos/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "googleapis-common-protos";
-  version = "1.58.0";
+  version = "1.60.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-xyclHsAllH1UUYS6F+NXiED8OiSgUWoCBHntq2YEV98=";
+    hash = "sha256-5z67QECY20BbqV0eGuCqkcPhWnHaAxou62suI+e8Nwg=";
   };
 
   propagatedBuildInputs = [ grpc protobuf ];
diff --git a/pkgs/development/python-modules/gphoto2/default.nix b/pkgs/development/python-modules/gphoto2/default.nix
index bea5b01ab152..a9c49b57063d 100644
--- a/pkgs/development/python-modules/gphoto2/default.nix
+++ b/pkgs/development/python-modules/gphoto2/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "gphoto2";
-  version = "2.3.4";
+  version = "2.5.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-mEbF/fOtw0cU/bx7DgQcmmJ/yqal8Hs/1KaLGC3e4/c=";
+    hash = "sha256-l9B6PEIGf8rkUlYApOytW2s9OhgcxMHVlDgfQR5ZnoA=";
   };
 
   nativeBuildInputs = [ pkg-config ];
diff --git a/pkgs/development/python-modules/gptcache/default.nix b/pkgs/development/python-modules/gptcache/default.nix
index 9fd2c80c3c49..3172e8d7bc89 100644
--- a/pkgs/development/python-modules/gptcache/default.nix
+++ b/pkgs/development/python-modules/gptcache/default.nix
@@ -4,12 +4,14 @@
 , cachetools
 , numpy
 , pythonOlder
+, redis
+, redis-om
 , requests
 }:
 
 buildPythonPackage rec {
   pname = "gptcache";
-  version = "0.1.37";
+  version = "0.1.41";
   format = "setuptools";
 
   disabled = pythonOlder "3.8.1";
@@ -18,12 +20,14 @@ buildPythonPackage rec {
     owner = "zilliztech";
     repo = "GPTCache";
     rev = "refs/tags/${version}";
-    hash = "sha256-eQu3O6jPL1BRObA99XA2EOznn9NaArVRouqD1Ypz/4w=";
+    hash = "sha256-0jQziywoDQQuNaB1G7YovX7473PfI7u5fTRQMidf3NA=";
   };
 
   propagatedBuildInputs = [
     cachetools
     numpy
+    redis
+    redis-om
     requests
   ];
 
diff --git a/pkgs/development/python-modules/gradio/default.nix b/pkgs/development/python-modules/gradio/default.nix
index c09b55496bef..5d051ef80ec2 100644
--- a/pkgs/development/python-modules/gradio/default.nix
+++ b/pkgs/development/python-modules/gradio/default.nix
@@ -53,7 +53,7 @@
 
 buildPythonPackage rec {
   pname = "gradio";
-  version = "3.43.1";
+  version = "3.44.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -62,7 +62,7 @@ buildPythonPackage rec {
   # and has more frequent releases compared to github tags
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-a8eHw8jedrse1dpgup9BL60oXx4wvOk8X5z5DP1DWOs=";
+    hash = "sha256-3mXs9PwlzUo89VosBWtnsOzDQf/T22Yv7s5j6OLLp3M=";
   };
 
   # fix packaging.ParserSyntaxError, which can't handle comments
diff --git a/pkgs/development/python-modules/graspologic/default.nix b/pkgs/development/python-modules/graspologic/default.nix
index 5ea1e5c55eb9..afc5b2edad2e 100644
--- a/pkgs/development/python-modules/graspologic/default.nix
+++ b/pkgs/development/python-modules/graspologic/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "graspologic";
-  version = "2.0.1";
+  version = "3.2.0";
 
   disabled = isPy27;
 
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "microsoft";
     repo = "graspologic";
     rev = "refs/tags/v${version}";
-    hash = "sha256-EmbCA4JpY2OIwXrRWjBxA4iNm0ddQODjoGmHIYgvAWs=";
+    hash = "sha256-yXhEI/8qm526D+Ehqqfb+j+sbbh83Q4OWC+UM7cgCjU=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/grpcio-health-checking/default.nix b/pkgs/development/python-modules/grpcio-health-checking/default.nix
index c202a1f7c659..ce1a78f02cfd 100644
--- a/pkgs/development/python-modules/grpcio-health-checking/default.nix
+++ b/pkgs/development/python-modules/grpcio-health-checking/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "grpcio-health-checking";
-  version = "1.56.2";
+  version = "1.58.0";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-XNodihNovizaBPkoSotzzuCf8+J37sjd2avPL+92s3I=";
+    hash = "sha256-B9WGI/J77PGGyGLLrn39elS9Y/SzdZTHfIuPyTPxHC8=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/grpcio-status/default.nix b/pkgs/development/python-modules/grpcio-status/default.nix
index 991549ea9ed9..c03c1faa9d4f 100644
--- a/pkgs/development/python-modules/grpcio-status/default.nix
+++ b/pkgs/development/python-modules/grpcio-status/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "grpcio-status";
-  version = "1.57.0";
+  version = "1.58.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-sJjamd8e6+WDN/j3jlDfmQJzzKzBIm/d60fFkOPfngI=";
+    hash = "sha256-C0LnDAQFpmqC2emGf6JV/lnmGJZKYJmyBWjDHdkJl2Y=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/grpcio-testing/default.nix b/pkgs/development/python-modules/grpcio-testing/default.nix
index 9e7b61e12b9e..904c0b24a0ab 100644
--- a/pkgs/development/python-modules/grpcio-testing/default.nix
+++ b/pkgs/development/python-modules/grpcio-testing/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "grpcio-testing";
-  version = "1.57.0";
+  version = "1.58.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-xFMqJlY+Ehn0K3bXqdiGEvL2X3Pm7IPhHHPWTi8ecOk=";
+    hash = "sha256-ABZMp+VTsyf2HE50cnHf9wdCOeGlAqpbuMWlbsWE/qY=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/grpcio-tools/default.nix b/pkgs/development/python-modules/grpcio-tools/default.nix
index 78e3cdaae7f1..285f3477deaa 100644
--- a/pkgs/development/python-modules/grpcio-tools/default.nix
+++ b/pkgs/development/python-modules/grpcio-tools/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "grpcio-tools";
-  version = "1.57.0";
+  version = "1.58.0";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-LxYTDYac4n7NYjGUVHtkndZXMz7H6GRMxXHGRXgam4U=";
+    hash = "sha256-b02AzrWR4xyk3O7HR9vlYTLhOSoKm7HI/gAdG1ysiYo=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/gssapi/default.nix b/pkgs/development/python-modules/gssapi/default.nix
index 30619532a4a5..56b79e8c08b6 100644
--- a/pkgs/development/python-modules/gssapi/default.nix
+++ b/pkgs/development/python-modules/gssapi/default.nix
@@ -17,14 +17,14 @@
 
 buildPythonPackage rec {
   pname = "gssapi";
-  version = "1.8.2";
+  version = "1.8.3";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "pythongssapi";
     repo = "python-${pname}";
     rev = "refs/tags/v${version}";
-    hash = "sha256-qz4EWAO++yq72/AGwyNOtH/fTRSFbiCo/K98htROUxI=";
+    hash = "sha256-H1JfdvxJvX5dmC9aTqIOkjAqFEL44KoUXEhoYj2uRY8=";
   };
 
   # It's used to locate headers
diff --git a/pkgs/development/python-modules/gst-python/default.nix b/pkgs/development/python-modules/gst-python/default.nix
index efa4fba8513a..2f9ced5aec75 100644
--- a/pkgs/development/python-modules/gst-python/default.nix
+++ b/pkgs/development/python-modules/gst-python/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "gst-python";
-  version = "1.22.5";
+  version = "1.22.6";
 
   format = "other";
 
@@ -22,7 +22,7 @@ buildPythonPackage rec {
 
   src = fetchurl {
     url = "${meta.homepage}/src/gst-python/${pname}-${version}.tar.xz";
-    hash = "sha256-vwUjJBXPYBgUKuUd07iXu3NDJoe1zheGv0btximM5bA=";
+    hash = "sha256-Ud4tbROxLOCV6sl8C5TuWcKuujcSu3Rit4xNV93hdsU=";
   };
 
   # Python 2.x is not supported.
diff --git a/pkgs/development/python-modules/h5netcdf/default.nix b/pkgs/development/python-modules/h5netcdf/default.nix
index 680e94028c09..1c97861f1eee 100644
--- a/pkgs/development/python-modules/h5netcdf/default.nix
+++ b/pkgs/development/python-modules/h5netcdf/default.nix
@@ -1,29 +1,30 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
 , h5py
 , pytestCheckHook
 , netcdf4
 , pythonOlder
+, setuptools
 , setuptools-scm
 }:
 
 buildPythonPackage rec {
   pname = "h5netcdf";
-  version = "1.1.0";
-  format = "setuptools";
+  version = "1.2.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-kyw7Vzvtc3Dr/J6ALNYPGk2lI277EbNu7/iXMk12v1Y=";
+    hash = "sha256-f2snM73gbqJXW3mmRQ2b1cOJGP9MsqNVvyK76Mhsa88=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
 
   nativeBuildInputs = [
+    setuptools
     setuptools-scm
   ];
 
diff --git a/pkgs/development/python-modules/h5py/default.nix b/pkgs/development/python-modules/h5py/default.nix
index 427caf0211e6..3fb20fad4c3b 100644
--- a/pkgs/development/python-modules/h5py/default.nix
+++ b/pkgs/development/python-modules/h5py/default.nix
@@ -21,7 +21,7 @@ let
   mpi = hdf5.mpi;
   mpiSupport = hdf5.mpiSupport;
 in buildPythonPackage rec {
-  version = "3.8.0";
+  version = "3.9.0";
   pname = "h5py";
   format = "pyproject";
 
@@ -29,7 +29,7 @@ in buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-b+rYLwxAAM841T+cAweA2Bv6AiAhiu4TuQt3Ack32V8=";
+    hash = "sha256-5gTbZSHB42fGvX+tI5yEf1PMRmRvLSZRNy0Frl6V+Bc=";
   };
 
   # avoid strict pinning of numpy
diff --git a/pkgs/development/python-modules/hacking/default.nix b/pkgs/development/python-modules/hacking/default.nix
index 3ea0b24f0684..bd92a2712228 100644
--- a/pkgs/development/python-modules/hacking/default.nix
+++ b/pkgs/development/python-modules/hacking/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "hacking";
-  version = "5.0.0";
+  version = "6.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-qzWyCK8/FHpvlZUnMxw4gK5BrCHMzra/1oqE9OtW4CY=";
+    hash = "sha256-YdeEb8G58m7CFnjpkHQmkJX5ZNe72M1kbrbIxML4jcE=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/hatch-jupyter-builder/default.nix b/pkgs/development/python-modules/hatch-jupyter-builder/default.nix
index 8ce6f73c547b..fe641977812f 100644
--- a/pkgs/development/python-modules/hatch-jupyter-builder/default.nix
+++ b/pkgs/development/python-modules/hatch-jupyter-builder/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "hatch-jupyter-builder";
-  version = "0.8.2";
+  version = "0.8.3";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "jupyterlab";
     repo = "hatch-jupyter-builder";
     rev = "refs/tags/v${version}";
-    hash = "sha256-Ns5jrVfTAA7NuvUok3/13nIpXSSVZ6WRkgHyTuxkSKA=";
+    hash = "sha256-UywhFJ8d1+lSFOF5ECsknDeQuO7ppckdy5IqAT14ius=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/hatch-nodejs-version/default.nix b/pkgs/development/python-modules/hatch-nodejs-version/default.nix
index ed849eaa52aa..806bffe56cc1 100644
--- a/pkgs/development/python-modules/hatch-nodejs-version/default.nix
+++ b/pkgs/development/python-modules/hatch-nodejs-version/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "hatch-nodejs-version";
-  version = "0.3.1";
+  version = "0.3.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "agoose77";
     repo = "hatch-nodejs-version";
     rev = "refs/tags/v${version}";
-    hash = "sha256-txF392XiRqHndTEYw6QVk12Oqw9E6cOwF81hUyp2oh4=";
+    hash = "sha256-hknlb11DCe+b55CfF3Pr62ccWPxVrjQ197ZagSiH/zU=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/hatch-requirements-txt/default.nix b/pkgs/development/python-modules/hatch-requirements-txt/default.nix
index af74b15b0214..a6246b3a4746 100644
--- a/pkgs/development/python-modules/hatch-requirements-txt/default.nix
+++ b/pkgs/development/python-modules/hatch-requirements-txt/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "hatch-requirements-txt";
-  version = "0.3.0";
+  version = "0.4.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "repo-helper";
     repo = "hatch-requirements-txt";
     rev = "refs/tags/v${version}";
-    hash = "sha256-Gyt5Fs8uqVe0cOKtxFeg1n1WMyeK5Iokh71ynb2i5cM=";
+    hash = "sha256-qk+70o/41BLxCuz3SOXkGYSEmUZOG1oLYcFUmlarqmY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/hdbscan/default.nix b/pkgs/development/python-modules/hdbscan/default.nix
index 1971516a00fa..75d8a4a990ce 100644
--- a/pkgs/development/python-modules/hdbscan/default.nix
+++ b/pkgs/development/python-modules/hdbscan/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "hdbscan";
-  version = "0.8.28";
+  version = "0.8.33";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-7tr3Hy87vt/Ew42hrUiXRUzl69R5LhponJecKFPtwFo=";
+    hash = "sha256-V/q8Xw5F9I0kB7NccxGSq8iWN2QR/n5LuDb/oD04+Q0=";
   };
   patches = [
     # should be included in next release
diff --git a/pkgs/development/python-modules/hdf5plugin/default.nix b/pkgs/development/python-modules/hdf5plugin/default.nix
index 5d231b2b0a60..38782e3240c0 100644
--- a/pkgs/development/python-modules/hdf5plugin/default.nix
+++ b/pkgs/development/python-modules/hdf5plugin/default.nix
@@ -6,14 +6,14 @@
 
 buildPythonPackage rec {
   pname = "hdf5plugin";
-  version = "4.1.3";
+  version = "4.2.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "silx-kit";
     repo = "hdf5plugin";
     rev = "refs/tags/v${version}";
-    hash = "sha256-0emCZ+r5dCRBT2xaNsgYskcGcLF/9Jf6K7FFi/PA+60=";
+    hash = "sha256-y0iDPAfm66FdclPREPnvurupWd9ZUgz8PqFd/JoapDc=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/holidays/default.nix b/pkgs/development/python-modules/holidays/default.nix
index 0f3f8ae66054..976766f0a4df 100644
--- a/pkgs/development/python-modules/holidays/default.nix
+++ b/pkgs/development/python-modules/holidays/default.nix
@@ -4,6 +4,7 @@
 , fetchFromGitHub
 , hijri-converter
 , korean-lunar-calendar
+, polib
 , pytestCheckHook
 , python-dateutil
 , pythonOlder
@@ -11,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "holidays";
-  version = "0.29";
+  version = "0.32";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
@@ -20,7 +21,7 @@ buildPythonPackage rec {
     owner = "dr-prodigy";
     repo = "python-holidays";
     rev = "refs/tags/v.${version}";
-    hash = "sha256-ijhqu0LzQzpjDSe9ZjNhgdjq/DJuD7oVbRTLX97nGHM=";
+    hash = "sha256-YAh5gR4KcUgXzeXy3xyGeokDFsyd9FqRQ5j1TC6wCQY=";
   };
 
   propagatedBuildInputs = [
@@ -31,6 +32,7 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
+    polib
     pytestCheckHook
   ];
 
diff --git a/pkgs/development/python-modules/httpbin/default.nix b/pkgs/development/python-modules/httpbin/default.nix
index 570b75eddc46..cc15e00748c0 100644
--- a/pkgs/development/python-modules/httpbin/default.nix
+++ b/pkgs/development/python-modules/httpbin/default.nix
@@ -1,43 +1,40 @@
 { lib
-, brotlipy
+, brotlicffi
 , buildPythonPackage
 , decorator
-, fetchpatch
 , fetchPypi
 , flask
 , flask-limiter
+, flasgger
 , itsdangerous
 , markupsafe
 , raven
 , six
 , pytestCheckHook
+, setuptools
 , werkzeug
 }:
 
 buildPythonPackage rec {
   pname = "httpbin";
-  version = "0.7.0";
-  format = "setuptools";
+  version = "0.10.1";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-y7N3kMkVdfTxV1f0KtQdn3KesifV7b6J5OwXVIbbjfo=";
+    hash = "sha256-e4WWvrDnWntlPDnR888mPW1cR20p4d9ve7K3C/nwaj0=";
   };
 
-  patches = [
-    (fetchpatch {
-      # Replaces BaseResponse class with Response class for Werkezug 2.1.0 compatibility
-      # https://github.com/postmanlabs/httpbin/pull/674
-      url = "https://github.com/postmanlabs/httpbin/commit/5cc81ce87a3c447a127e4a1a707faf9f3b1c9b6b.patch";
-      hash = "sha256-SbEWjiqayMFYrbgAPZtSsXqSyCDUz3z127XgcKOcrkE=";
-    })
+  nativeBuildInputs = [
+    setuptools
   ];
 
   propagatedBuildInputs = [
-    brotlipy
+    brotlicffi
     decorator
     flask
     flask-limiter
+    flasgger
     itsdangerous
     markupsafe
     raven
@@ -49,10 +46,6 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
-  pytestFlagsArray = [
-    "test_httpbin.py"
-  ];
-
   disabledTests = [
     # Tests seems to be outdated
     "test_anything"
@@ -70,7 +63,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "HTTP Request and Response Service";
-    homepage = "https://github.com/kennethreitz/httpbin";
+    homepage = "https://github.com/psf/httpbin";
     license = licenses.mit;
     maintainers = with maintainers; [ ];
   };
diff --git a/pkgs/development/python-modules/httpcore/default.nix b/pkgs/development/python-modules/httpcore/default.nix
index 9f3905f55182..91cd904e3afe 100644
--- a/pkgs/development/python-modules/httpcore/default.nix
+++ b/pkgs/development/python-modules/httpcore/default.nix
@@ -3,6 +3,8 @@
 , buildPythonPackage
 , certifi
 , fetchFromGitHub
+, hatchling
+, hatch-fancy-pypi-readme
 , h11
 , h2
 , pproxy
@@ -20,8 +22,8 @@
 
 buildPythonPackage rec {
   pname = "httpcore";
-  version = "0.17.2";
-  format = "setuptools";
+  version = "0.18.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
@@ -29,9 +31,14 @@ buildPythonPackage rec {
     owner = "encode";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-qAoORhzBbjXxgtzTqbAxWBxrohzfwDWm5mxxrgeXt48=";
+    hash = "sha256-UEpERsB7jZlMqRtyHxLYBisfDbTGaAiTtsgU1WUpvtA=";
   };
 
+  nativeBuildInputs = [
+    hatchling
+    hatch-fancy-pypi-readme
+  ];
+
   propagatedBuildInputs = [
     anyio
     certifi
@@ -57,18 +64,19 @@ buildPythonPackage rec {
   ] ++ passthru.optional-dependencies.http2
     ++ passthru.optional-dependencies.socks;
 
-  pythonImportsCheck = [
-    "httpcore"
+  disabledTests = [
+    # https://github.com/encode/httpcore/discussions/813
+    "test_connection_pool_timeout_during_request"
+    "test_connection_pool_timeout_during_response"
+    "test_h11_timeout_during_request"
+    "test_h11_timeout_during_response"
+    "test_h2_timeout_during_handshake"
+    "test_h2_timeout_during_request"
+    "test_h2_timeout_during_response"
   ];
 
-  preCheck = ''
-    # remove upstreams pytest flags which cause:
-    # httpcore.ConnectError: TLS/SSL connection has been closed (EOF) (_ssl.c:997)
-    rm setup.cfg
-  '';
-
-  pytestFlagsArray = [
-    "--asyncio-mode=strict"
+  pythonImportsCheck = [
+    "httpcore"
   ];
 
   __darwinAllowLocalNetworking = true;
diff --git a/pkgs/development/python-modules/httpie/default.nix b/pkgs/development/python-modules/httpie/default.nix
index 22b6918bccc9..43f69ecd3c9b 100644
--- a/pkgs/development/python-modules/httpie/default.nix
+++ b/pkgs/development/python-modules/httpie/default.nix
@@ -106,6 +106,11 @@ buildPythonPackage rec {
     "test_valid_xml"
     "test_xml_format_options"
     "test_xml_xhtm"
+    # httpbin compatibility issues
+    "test_compress_form"
+    "test_binary_suppresses_when_terminal"
+    "test_binary_suppresses_when_not_terminal_but_pretty"
+    "test_binary_included_and_correct_when_suitable"
   ] ++ lib.optionals stdenv.isDarwin [
     # flaky
     "test_daemon_runner"
diff --git a/pkgs/development/python-modules/httpx-socks/default.nix b/pkgs/development/python-modules/httpx-socks/default.nix
index 992ddf1c6932..58e6fded6e1a 100644
--- a/pkgs/development/python-modules/httpx-socks/default.nix
+++ b/pkgs/development/python-modules/httpx-socks/default.nix
@@ -23,7 +23,7 @@
 
 buildPythonPackage rec {
   pname = "httpx-socks";
-  version = "0.7.6";
+  version = "0.7.8";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -32,7 +32,7 @@ buildPythonPackage rec {
     owner = "romis2012";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-rLcYC8IO2eCWAL4QIiUg/kyigybq6VNTUjNDXx4KPHc=";
+    hash = "sha256-I00+yB+aRnIMUQIJ7Lvr6LsHpf+gibkHh+2XgpeQn5U=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/httpx/default.nix b/pkgs/development/python-modules/httpx/default.nix
index 11204ec8b9b4..7e451532af04 100644
--- a/pkgs/development/python-modules/httpx/default.nix
+++ b/pkgs/development/python-modules/httpx/default.nix
@@ -29,7 +29,7 @@
 
 buildPythonPackage rec {
   pname = "httpx";
-  version = "0.24.1";
+  version = "0.25.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -38,7 +38,7 @@ buildPythonPackage rec {
     owner = "encode";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-qG6fgijNgQKjpSG6sg0+0yqeAU6qV7czR8NgWe63LIg=";
+    hash = "sha256-zQVavjU66ksO0FB1h32e0YUhOGiQ4jHPvjgLhtxjU6s=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/hupper/default.nix b/pkgs/development/python-modules/hupper/default.nix
index da287226ff53..11f37dcac28e 100644
--- a/pkgs/development/python-modules/hupper/default.nix
+++ b/pkgs/development/python-modules/hupper/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "hupper";
-  version = "1.11";
+  version = "1.12";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-FcEb13XY+YCVt0W05lihfCXIbjtzJ1yuiWrByNUzyxg=";
+    hash = "sha256-GLFlPZgyyfjn00AZhsfnryrmeDYWvgvEBr/gsUE0pcY=";
   };
 
   # FIXME: watchdog dependency is disabled on Darwin because of #31865, which causes very silent
diff --git a/pkgs/development/python-modules/hvac/default.nix b/pkgs/development/python-modules/hvac/default.nix
index 7f8c9c5bea8a..6fe396897114 100644
--- a/pkgs/development/python-modules/hvac/default.nix
+++ b/pkgs/development/python-modules/hvac/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "hvac";
-  version = "1.2.0";
+  version = "1.2.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-b1qg1rgTi1hdRlbR/gG12HYWMQyASEuQnMhMLLjwZP0=";
+    hash = "sha256-x4bj36HzUjmBDlMXzMrb41j0m4yQAaHy9ot5olC5+KE=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/hypothesis-auto/default.nix b/pkgs/development/python-modules/hypothesis-auto/default.nix
index 49638e825823..ad6ae8dbd96c 100644
--- a/pkgs/development/python-modules/hypothesis-auto/default.nix
+++ b/pkgs/development/python-modules/hypothesis-auto/default.nix
@@ -1,41 +1,27 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
 , hypothesis
 , poetry-core
 , pydantic
 , pytest
+, pytestCheckHook
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "hypothesis-auto";
-  version = "1.1.4";
+  version = "1.1.5";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-XiwvsJ3AmEJRLYBjC7eSNZodM9LARzrUfuI9oL6eMrE=";
+    pname = "hypothesis_auto";
+    inherit version;
+    hash = "sha256-U0vcOB9jXmUV5v2IwybVu2arY1FpPnKkP7m2kbD1kRw=";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "switch-to-poetry-core.patch";
-      url = "https://github.com/timothycrosley/hypothesis-auto/commit/8277b4232617c0433f80e9c2844452b9fae67a65.patch";
-      hash = "sha256-/0z0nphtQnUBiLYhhzLZT59kQgktSugaBg+ePNxy0qI=";
-    })
-  ];
-
-  postPatch = ''
-    # https://github.com/timothycrosley/hypothesis-auto/pull/20
-    substituteInPlace pyproject.toml \
-      --replace 'pydantic = ">=0.32.2<2.0.0"' 'pydantic = ">=0.32.2, <2.0.0"' \
-      --replace 'hypothesis = ">=4.36<6.0.0"' 'hypothesis = "*"'
-  '';
-
   nativeBuildInputs = [
     poetry-core
   ];
@@ -50,6 +36,10 @@ buildPythonPackage rec {
     "hypothesis_auto"
   ];
 
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
   meta = with lib; {
     description = "Enables fully automatic tests for type annotated functions";
     homepage = "https://github.com/timothycrosley/hypothesis-auto/";
diff --git a/pkgs/development/python-modules/hypothesis/default.nix b/pkgs/development/python-modules/hypothesis/default.nix
index a5692c631508..4cc5aab3bffe 100644
--- a/pkgs/development/python-modules/hypothesis/default.nix
+++ b/pkgs/development/python-modules/hypothesis/default.nix
@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "hypothesis";
-  version = "6.68.2";
+  version = "6.84.3";
   outputs = [ "out" ];
   format = "setuptools";
 
@@ -31,7 +31,7 @@ buildPythonPackage rec {
     owner = "HypothesisWorks";
     repo = "hypothesis";
     rev = "hypothesis-python-${version}";
-    hash = "sha256-SgX8esTyC3ulFIv9mZJUoBA5hiv7Izr2hyD+NOudkpE=";
+    hash = "sha256-wymZ/tJBGcP57B3BuDlBT7kbUxNwW4/SSmvwLSa5PvM=";
   };
 
   # I tried to package sphinx-selective-exclude, but it throws
diff --git a/pkgs/development/python-modules/hyppo/default.nix b/pkgs/development/python-modules/hyppo/default.nix
index 223ef9fe7a43..709c7180f004 100644
--- a/pkgs/development/python-modules/hyppo/default.nix
+++ b/pkgs/development/python-modules/hyppo/default.nix
@@ -14,15 +14,15 @@
 
 buildPythonPackage rec {
   pname = "hyppo";
-  version = "0.3.2";
+  version = "0.4.0";
 
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "neurodata";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-DQ5DrQrFBJ3dnGAjD1c/7GCJeR3g+aL2poR4hwOvmPA=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-QRE3oSxTEobTQ/7DzCAUOdjzIZmWUn9bgPmJWj6JuZg=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/ifcopenshell/default.nix b/pkgs/development/python-modules/ifcopenshell/default.nix
index e2c945c2834e..eb1c71601c92 100644
--- a/pkgs/development/python-modules/ifcopenshell/default.nix
+++ b/pkgs/development/python-modules/ifcopenshell/default.nix
@@ -14,15 +14,15 @@
 
 buildPythonPackage rec {
   pname = "ifcopenshell";
-  version = "210410";
+  version = "230915";
   format = "other";
 
   src = fetchFromGitHub {
     owner  = "IfcOpenShell";
     repo   = "IfcOpenShell";
-    rev    = "blenderbim-${version}";
+    rev = "refs/tags/blenderbim-${version}";
     fetchSubmodules = true;
-    sha256 = "1g52asxrqcfj01iqvf03k3bb6rg3v04hh1wc3nmn329a2lwjbxpw";
+    sha256 = "sha256-dHw+5AlJbeuUeaxv7eE2XfLjR/K5S00dMSCtoWVcEB8=";
   };
 
   nativeBuildInputs = [ gcc10 cmake ];
diff --git a/pkgs/development/python-modules/image-go-nord/default.nix b/pkgs/development/python-modules/image-go-nord/default.nix
index 519ac772a59e..ff7c654c9ea3 100644
--- a/pkgs/development/python-modules/image-go-nord/default.nix
+++ b/pkgs/development/python-modules/image-go-nord/default.nix
@@ -2,14 +2,14 @@
 
 buildPythonPackage rec {
   pname = "image-go-nord";
-  version = "0.1.5";
+  version = "0.1.7";
   disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "Schrodinger-Hat";
     repo = "ImageGoNord-pip";
-    rev = "v${version}";
-    hash = "sha256-O34COlGsXExJShRd2zvhdescNfYXWLNuGpkjcH3koPU=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-vXABG3aJ6bwT37hfo909oF8qfAY3ZW18xvr1V8vSy5w=";
   };
 
   propagatedBuildInputs = [ pillow ];
diff --git a/pkgs/development/python-modules/imageio-ffmpeg/default.nix b/pkgs/development/python-modules/imageio-ffmpeg/default.nix
index cdffa669edcf..3f2b7de89dde 100644
--- a/pkgs/development/python-modules/imageio-ffmpeg/default.nix
+++ b/pkgs/development/python-modules/imageio-ffmpeg/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "imageio-ffmpeg";
-  version = "0.4.8";
+  version = "0.4.9";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-/aoFrRD+Bwt/qOX2FcsNKPO5t5HQCvbSoR5pQVjRCqk=";
+    hash = "sha256-ObzRZgEY7zYPpAR0VlAQcTZGYaqdkCHT0mxY8e4ggfU=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/imageio/default.nix b/pkgs/development/python-modules/imageio/default.nix
index 6989a12bf865..083170fd438b 100644
--- a/pkgs/development/python-modules/imageio/default.nix
+++ b/pkgs/development/python-modules/imageio/default.nix
@@ -16,14 +16,14 @@
 
 buildPythonPackage rec {
   pname = "imageio";
-  version = "2.28.1";
+  version = "2.31.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-XbUIe+XIFOz34sfTChoVyX7Kl9jCbzHdxU12fUpDvOg=";
+    hash = "sha256-dMaoMtgbetWoqAl23qWO4DPT4rmaVJkMvXibTLCzFGE=";
   };
 
   patches = lib.optionals (!stdenv.isDarwin) [
diff --git a/pkgs/development/python-modules/iminuit/default.nix b/pkgs/development/python-modules/iminuit/default.nix
index c1d896f698e1..3969b1c9ca51 100644
--- a/pkgs/development/python-modules/iminuit/default.nix
+++ b/pkgs/development/python-modules/iminuit/default.nix
@@ -1,27 +1,43 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, pythonOlder
+
+# build-system
 , cmake
+, scikit-build-core
+, pybind11
+, pathspec
+, ninja
+, pyproject-metadata
+
+# dependencies
 , numpy
+
+# tests
 , pytestCheckHook
-, pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "iminuit";
-  version = "2.21.3";
-  format = "setuptools";
+  version = "2.24.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-+zE/DMJ+IhubIhvNd5s6Zo+0x3sPkKv9UzaDPsvawBY=";
+    hash = "sha256-JatjHDyOAksbzHyW9mM4yqxUpKIyTVXx47pWF4FuRP0=";
   };
 
   nativeBuildInputs = [
     cmake
-  ];
+    scikit-build-core
+    pybind11
+    pathspec
+    ninja
+    pyproject-metadata
+  ] ++ scikit-build-core.optional-dependencies.pyproject;
 
   propagatedBuildInputs = [
     numpy
diff --git a/pkgs/development/python-modules/importlib-resources/default.nix b/pkgs/development/python-modules/importlib-resources/default.nix
index b470eb12a4ea..8b6afb522b6a 100644
--- a/pkgs/development/python-modules/importlib-resources/default.nix
+++ b/pkgs/development/python-modules/importlib-resources/default.nix
@@ -11,14 +11,14 @@
 
 buildPythonPackage rec {
   pname = "importlib-resources";
-  version = "5.12.0";
+  version = "6.0.1";
   format = "pyproject";
   disabled = isPy27;
 
   src = fetchPypi {
     pname = "importlib_resources";
     inherit version;
-    hash = "sha256-S+glib9cHXmZrt8qRRWdEMs8pPGbInH4eSvI5tp7IvY=";
+    hash = "sha256-Q1lFfkJwhGK5YmoEZXxiCK15nOtB5cWMV/+g5qCYpdQ=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/inflect/default.nix b/pkgs/development/python-modules/inflect/default.nix
index 9805f72ef830..10f5a56763ef 100644
--- a/pkgs/development/python-modules/inflect/default.nix
+++ b/pkgs/development/python-modules/inflect/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "inflect";
-  version = "6.0.4";
+  version = "7.0.0";
   disabled = isPy27;
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-GEJkmhe2ytZoEqXJvfrLYxDh57bdijHwJnZt8bYmEus=";
+    hash = "sha256-Y9qTJa0p2oHsI+BVtBIleVq3k7TstIO+XcH6Nj/UcX4=";
   };
 
   nativeBuildInputs = [ setuptools-scm ];
diff --git a/pkgs/development/python-modules/influxdb/default.nix b/pkgs/development/python-modules/influxdb/default.nix
index ce6bccdd409f..e270df9746d2 100644
--- a/pkgs/development/python-modules/influxdb/default.nix
+++ b/pkgs/development/python-modules/influxdb/default.nix
@@ -2,7 +2,6 @@
 , buildPythonPackage
 , python-dateutil
 , fetchPypi
-, fetchpatch
 , mock
 , msgpack
 , nose
@@ -56,6 +55,7 @@ buildPythonPackage rec {
     #   b'foo[30 chars]_one="1",column_two=1i 0\nfoo,tag_one=red,tag_[46 chars]00\n'
     "test_write_points_from_dataframe_with_nan_json"
     "test_write_points_from_dataframe_with_tags_and_nan_json"
+    "test_write_points_from_dataframe_with_numeric_precision"
     # Reponse is not empty but `s = '孝'` and the JSON decoder chokes on that
     "test_query_with_empty_result"
     # Pandas API changes cause it to no longer infer datetimes in the expected manner
diff --git a/pkgs/development/python-modules/ipdb/default.nix b/pkgs/development/python-modules/ipdb/default.nix
index 4aec18990732..f5911b627c8d 100644
--- a/pkgs/development/python-modules/ipdb/default.nix
+++ b/pkgs/development/python-modules/ipdb/default.nix
@@ -5,6 +5,7 @@
 , decorator
 , ipython
 , isPyPy
+, exceptiongroup
 , tomli
 , setuptools
 , unittestCheckHook
@@ -30,6 +31,7 @@ buildPythonPackage rec {
     ipython
     decorator
   ] ++ lib.optionals (pythonOlder "3.11") [
+    exceptiongroup
     tomli
   ];
 
diff --git a/pkgs/development/python-modules/ipykernel/default.nix b/pkgs/development/python-modules/ipykernel/default.nix
index aeb19ec9f2bd..74cb52629af5 100644
--- a/pkgs/development/python-modules/ipykernel/default.nix
+++ b/pkgs/development/python-modules/ipykernel/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "ipykernel";
-  version = "6.21.2";
+  version = "6.25.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-bpITSE5M4fsUJn7kNeGPI8w6BjTmNbn7TtRne4Tg/fg=";
+    hash = "sha256-9Gjd0fF6y0jIzmf8+km6bUbU+awEOMH0Qb58PRNyIws=";
   };
 
   # debugpy is optional, see https://github.com/ipython/ipykernel/pull/767
diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix
index d0fd08146bcf..a730531bf873 100644
--- a/pkgs/development/python-modules/ipython/default.nix
+++ b/pkgs/development/python-modules/ipython/default.nix
@@ -2,7 +2,6 @@
 , stdenv
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
 , pythonOlder
 
 # Build dependencies
@@ -12,6 +11,7 @@
 , appnope
 , backcall
 , decorator
+, exceptiongroup
 , jedi
 , matplotlib-inline
 , pexpect
@@ -20,6 +20,7 @@
 , pygments
 , stack-data
 , traitlets
+, typing-extensions
 
 # Test dependencies
 , pytestCheckHook
@@ -28,13 +29,13 @@
 
 buildPythonPackage rec {
   pname = "ipython";
-  version = "8.11.0";
+  version = "8.15.0";
   format = "pyproject";
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "735cede4099dbc903ee540307b9171fbfef4aa75cfcacc5a273b2cda2f02be04";
+    sha256 = "sha256-K661vmlJ7uv1MhUPgXRvgzPizM4C3hx+7d4/I+1enx4=";
   };
 
   nativeBuildInputs = [
@@ -52,6 +53,10 @@ buildPythonPackage rec {
     pygments
     stack-data
     traitlets
+  ] ++ lib.optionals (pythonOlder "3.11") [
+    exceptiongroup
+  ] ++ lib.optionals (pythonOlder "3.10") [
+    typing-extensions
   ] ++ lib.optionals stdenv.isDarwin [
     appnope
   ];
@@ -64,8 +69,8 @@ buildPythonPackage rec {
     export HOME=$TMPDIR
 
     # doctests try to fetch an image from the internet
-    substituteInPlace pytest.ini \
-      --replace "--ipdoctest-modules" "--ipdoctest-modules --ignore=IPython/core/display.py"
+    substituteInPlace pyproject.toml \
+      --replace '"--ipdoctest-modules",' '"--ipdoctest-modules", "--ignore=IPython/core/display.py",'
   '';
 
   nativeCheckInputs = [
@@ -83,6 +88,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "IPython: Productive Interactive Computing";
+    downloadPage = "https://github.com/ipython/ipython/";
     homepage = "https://ipython.org/";
     changelog = "https://github.com/ipython/ipython/blob/${version}/docs/source/whatsnew/version${lib.versions.major version}.rst";
     license = licenses.bsd3;
diff --git a/pkgs/development/python-modules/ipywidgets/default.nix b/pkgs/development/python-modules/ipywidgets/default.nix
index 5432d31c5472..0de6db55b941 100644
--- a/pkgs/development/python-modules/ipywidgets/default.nix
+++ b/pkgs/development/python-modules/ipywidgets/default.nix
@@ -13,12 +13,12 @@
 
 buildPythonPackage rec {
   pname = "ipywidgets";
-  version = "8.0.6";
+  version = "8.1.1";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-3n13nyBF1g3p9sJfZT/a4tuleJjmoShElLO6ILaJO7g=";
+    hash = "sha256-QCEe+1Vq3sb6RQzMKnfVnKRKBg9PnxNoM99ZyfU45ug=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/iso8601/default.nix b/pkgs/development/python-modules/iso8601/default.nix
index c3e022cdb38b..ade0c71ee887 100644
--- a/pkgs/development/python-modules/iso8601/default.nix
+++ b/pkgs/development/python-modules/iso8601/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "iso8601";
-  version = "1.1.0";
+  version = "2.0.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-MoEee4He7iBj6m0ulPiBmobR84EeSdI2I6QfqDK+8D8=";
+    hash = "sha256-c5lg03x0x3vZvVRqdlYsy1gf49SCD/XDFB60nIOf2o8=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jaraco-classes/default.nix b/pkgs/development/python-modules/jaraco-classes/default.nix
index 8c9b32fb11ee..317fc3e3dc1a 100644
--- a/pkgs/development/python-modules/jaraco-classes/default.nix
+++ b/pkgs/development/python-modules/jaraco-classes/default.nix
@@ -6,14 +6,16 @@
 
 buildPythonPackage rec {
   pname = "jaraco-classes";
-  version = "3.1.1";
+  version = "3.3.0";
+  format = "pyproject";
+
   disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "jaraco";
     repo = "jaraco.classes";
-    rev = "v${version}";
-    sha256 = "0wzrcsxi9gb65inayg0drm08iaw37jm1lqxhz3860i6pwjh503pr";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-DW8qf6G6997vBOaO1+Bdx4LBvKfpl/MiiFqWJYKE/pg=";
   };
 
   pythonNamespaces = [ "jaraco" ];
diff --git a/pkgs/development/python-modules/jaraco-functools/default.nix b/pkgs/development/python-modules/jaraco-functools/default.nix
index 9cd5e9988f66..0cc2fa124db5 100644
--- a/pkgs/development/python-modules/jaraco-functools/default.nix
+++ b/pkgs/development/python-modules/jaraco-functools/default.nix
@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "jaraco-functools";
-  version = "3.6.0";
+  version = "3.9.0";
   format = "pyproject";
 
   src = fetchPypi {
     pname = "jaraco.functools";
     inherit version;
-    hash = "sha256-Lho74Rq67O5fWrjdWJY4voMEzEy5E2H+Xmg/S22ft6M=";
+    hash = "sha256-ixN7D+rMF/70us7gTAEcnobyNBCZyHCh0S0743sypjg=";
   };
 
   nativeBuildInputs = [ setuptools-scm ];
diff --git a/pkgs/development/python-modules/jaraco-itertools/default.nix b/pkgs/development/python-modules/jaraco-itertools/default.nix
index 906733508c25..23722cc20c4b 100644
--- a/pkgs/development/python-modules/jaraco-itertools/default.nix
+++ b/pkgs/development/python-modules/jaraco-itertools/default.nix
@@ -4,13 +4,13 @@
 
 buildPythonPackage rec {
   pname = "jaraco-itertools";
-  version = "6.2.1";
+  version = "6.4.1";
   format = "pyproject";
 
   src = fetchPypi {
     pname = "jaraco.itertools";
     inherit version;
-    hash = "sha256-YJjts3xrgCPzeU1CWIoTv3WyygK0D/l5XIRry+DBtGw=";
+    hash = "sha256-MU/OVi67RepIIqmLvXsi5f6sfVEY28Gk8ess0Ea/+kc=";
   };
 
   pythonNamespaces = [ "jaraco" ];
diff --git a/pkgs/development/python-modules/jaxopt/default.nix b/pkgs/development/python-modules/jaxopt/default.nix
index ff4743372a18..6320619c1383 100644
--- a/pkgs/development/python-modules/jaxopt/default.nix
+++ b/pkgs/development/python-modules/jaxopt/default.nix
@@ -24,7 +24,7 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "google";
     repo = pname;
-    rev = "refs/tags/${pname}-v${version}";
+    rev = "refs/tags/jaxopt-v${version}";
     hash = "sha256-5+GfRFzXyc1Ukp86NeK0qstTq9fkx+eDb4iXvxzRoKs=";
   };
 
diff --git a/pkgs/development/python-modules/jedi-language-server/default.nix b/pkgs/development/python-modules/jedi-language-server/default.nix
index 35749407a36e..10969de0673e 100644
--- a/pkgs/development/python-modules/jedi-language-server/default.nix
+++ b/pkgs/development/python-modules/jedi-language-server/default.nix
@@ -9,14 +9,14 @@
 , pydantic
 , pyhamcrest
 , pytestCheckHook
-, python-jsonrpc-server
+, python-lsp-jsonrpc
 , pythonOlder
 , pythonRelaxDepsHook
 }:
 
 buildPythonPackage rec {
   pname = "jedi-language-server";
-  version = "0.40.0";
+  version = "0.41.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     owner = "pappasam";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-+3VgONZzlobgs4wujCaGTTYpIgYrWgWwYgKQqirS7t8=";
+    hash = "sha256-1ujEhoxWcCM1g640aLE60YGiNQLB+G7t7oLVZXW8AMM=";
   };
 
   pythonRelaxDeps = [
@@ -48,7 +48,7 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     pytestCheckHook
     pyhamcrest
-    python-jsonrpc-server
+    python-lsp-jsonrpc
   ];
 
   preCheck = ''
diff --git a/pkgs/development/python-modules/jiwer/default.nix b/pkgs/development/python-modules/jiwer/default.nix
index b92d1e71755a..d042726daa6a 100644
--- a/pkgs/development/python-modules/jiwer/default.nix
+++ b/pkgs/development/python-modules/jiwer/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "jiwer";
-  version = "3.0.2";
+  version = "3.0.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "jitsi";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-z+M0/mftitLV2OaaQvTdRehtt16FFeBjqR//S5ad1XE=";
+    hash = "sha256-32bpSBYl6yxb4lJhHnfnYhtye7DaBZT0VAe9rDcleTc=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jsonpickle/default.nix b/pkgs/development/python-modules/jsonpickle/default.nix
index d60fd41d7045..4fc2f49119dc 100644
--- a/pkgs/development/python-modules/jsonpickle/default.nix
+++ b/pkgs/development/python-modules/jsonpickle/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "jsonpickle";
-  version = "3.0.1";
+  version = "3.0.2";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-AyU4gEeV5zuU6tQQgArDh/223pj4iCrJV/zSR+OoUgA=";
+    hash = "sha256-43q7pL+zykpGR9KLufRwZDb3tGyKgzO0pxirr6jkazc=";
   };
 
   nativeCheckInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/jsonpointer/default.nix b/pkgs/development/python-modules/jsonpointer/default.nix
index 646824b064a7..f05b886cfb12 100644
--- a/pkgs/development/python-modules/jsonpointer/default.nix
+++ b/pkgs/development/python-modules/jsonpointer/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "jsonpointer";
-  version = "2.3";
+  version = "2.4";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-l8ulFSbIKSgiGP65nasbHmvfjv0cQ9ydV74JPA1pyZo=";
+    hash = "sha256-WFzugrcCEfqeYEO3u4nbbhqklSQ0Dd6K1rYyBuponYg=";
   };
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/jsonschema-spec/default.nix b/pkgs/development/python-modules/jsonschema-spec/default.nix
index 3353e5ec4380..0da22f2cf98f 100644
--- a/pkgs/development/python-modules/jsonschema-spec/default.nix
+++ b/pkgs/development/python-modules/jsonschema-spec/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "jsonschema-spec";
-  version = "0.2.3";
+  version = "0.2.4";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -28,7 +28,7 @@ buildPythonPackage rec {
     owner = "p1c2u";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-Sa97DwPnGMLmT00hVdkoGO7C0vrvtwxvUvv9lq4nCY4=";
+    hash = "sha256-1Flb3XQCGhrAYzTvriSVhHDb/Z/uvCyZdbav2u7f3sg=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/jsonschema/default.nix b/pkgs/development/python-modules/jsonschema/default.nix
index 0f3d69b18d8c..d8c235efed23 100644
--- a/pkgs/development/python-modules/jsonschema/default.nix
+++ b/pkgs/development/python-modules/jsonschema/default.nix
@@ -28,14 +28,14 @@
 
 buildPythonPackage rec {
   pname = "jsonschema";
-  version = "4.18.4";
+  version = "4.19.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-+zZCc1OZ+pWMDSqtcFeQFVRZbGM0n09rKDxJPPaSol0=";
+    hash = "sha256-bh51aawTvoE5st0sIaVdNQBm7j+A3wbGCLOYzcbzDo8=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/jupyter-client/default.nix b/pkgs/development/python-modules/jupyter-client/default.nix
index 5aa400a1694c..2d7234051d23 100644
--- a/pkgs/development/python-modules/jupyter-client/default.nix
+++ b/pkgs/development/python-modules/jupyter-client/default.nix
@@ -15,12 +15,12 @@
 
 buildPythonPackage rec {
   pname = "jupyter_client";
-  version = "8.0.3";
+  version = "8.3.1";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-7WVJi+pth2752No+DbPdM8XRKfWyZF9WrgOZN4KWa9A=";
+    hash = "sha256-YClLLVuGk1bIk/V7God+plENYNRc9LOAV/FnLYVpmsk=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jupyter-collaboration/default.nix b/pkgs/development/python-modules/jupyter-collaboration/default.nix
index de73ea621b47..6c2842eb6d0c 100644
--- a/pkgs/development/python-modules/jupyter-collaboration/default.nix
+++ b/pkgs/development/python-modules/jupyter-collaboration/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "jupyter-collaboration";
-  version = "1.1.0";
+  version = "1.2.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -27,7 +27,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "jupyter_collaboration";
     inherit version;
-    hash = "sha256-3OxduJ93TmbS/fKSKmVXs5vj2IZMX5MqKPTeGklFCbM=";
+    hash = "sha256-qhcCPAgHlBwt+Lt8NdDa+ZPhNNotCvNtz9WQx6OHvOc=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/jupyter-console/default.nix b/pkgs/development/python-modules/jupyter-console/default.nix
index e847c341f4d8..715557bad733 100644
--- a/pkgs/development/python-modules/jupyter-console/default.nix
+++ b/pkgs/development/python-modules/jupyter-console/default.nix
@@ -2,9 +2,9 @@
 , buildPythonPackage
 , fetchPypi
 , pythonOlder
-, substituteAll
 , hatchling
 , ipykernel
+, exceptiongroup
 , ipython
 , jupyter-client
 , jupyter-core
@@ -51,6 +51,8 @@ buildPythonPackage rec {
     pygments
     pyzmq
     traitlets
+  ] ++ lib.optionals (pythonOlder "3.11") [
+    exceptiongroup
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/jupyter-core/default.nix b/pkgs/development/python-modules/jupyter-core/default.nix
index a25681dda45a..fb5880a4f226 100644
--- a/pkgs/development/python-modules/jupyter-core/default.nix
+++ b/pkgs/development/python-modules/jupyter-core/default.nix
@@ -2,7 +2,6 @@
 , buildPythonPackage
 , pythonOlder
 , fetchFromGitHub
-, fetchpatch
 , hatchling
 , platformdirs
 , traitlets
@@ -11,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "jupyter-core";
-  version = "5.2.0";
+  version = "5.3.1";
   disabled = pythonOlder "3.7";
 
   format = "pyproject";
@@ -20,16 +19,11 @@ buildPythonPackage rec {
     owner = "jupyter";
     repo = "jupyter_core";
     rev = "refs/tags/v${version}";
-    hash = "sha256-X3P3bTLhpWIa6EHdxZ/KFiQNAnhszha2cfZ8PynZPRs=";
+    hash = "sha256-kQ7oNEC5L19PTPaX6C2bP5FYuzlsFsS0TABsw6VvoL8=";
   };
 
   patches = [
     ./tests_respect_pythonpath.patch
-    (fetchpatch {
-      # add support for platformdirs>=3
-      url = "https://github.com/jupyter/jupyter_core/commit/ff4086cdbdac2ea79c18632e4e35acebc1f7cf57.patch";
-      hash = "sha256-UhHO58xZ4hH47NBhOhsfBjgsUtA+1EIHxPBvnKA5w28=";
-    })
   ];
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jupyter-events/default.nix b/pkgs/development/python-modules/jupyter-events/default.nix
index a60983e40420..98e6ea22df6e 100644
--- a/pkgs/development/python-modules/jupyter-events/default.nix
+++ b/pkgs/development/python-modules/jupyter-events/default.nix
@@ -23,14 +23,14 @@
 
 buildPythonPackage rec {
   pname = "jupyter-events";
-  version = "0.6.3";
+  version = "0.7.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "jupyter";
     repo = "jupyter_events";
     rev = "refs/tags/v${version}";
-    hash = "sha256-k+OyCKUN9hC6J1Ff2DDb2ECLvmWkkK1HtNxfKVXyl8g=";
+    hash = "sha256-hOx2/WiFpDjtmP+qC6Ew2VY4/gdvXuv2k76qtmS+61M=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jupyterlab-git/default.nix b/pkgs/development/python-modules/jupyterlab-git/default.nix
index e894a8c88d8d..7c0522c75401 100644
--- a/pkgs/development/python-modules/jupyterlab-git/default.nix
+++ b/pkgs/development/python-modules/jupyterlab-git/default.nix
@@ -17,14 +17,14 @@
 
 buildPythonPackage rec {
   pname = "jupyterlab-git";
-  version = "0.41.0";
+  version = "0.42.0";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     pname = "jupyterlab_git";
     inherit version;
-    hash = "sha256-UXZ9qgAvCKfPCzchFOtwbv8vNPEtcLU0dwBGTmiHSD4=";
+    hash = "sha256-GFnox6KnwKWFqsUWY0QYzMShXlH9KFSY3rRJA4RAiCk=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jupyterlab-widgets/default.nix b/pkgs/development/python-modules/jupyterlab-widgets/default.nix
index 2418b8db4d35..4d668da9bde6 100644
--- a/pkgs/development/python-modules/jupyterlab-widgets/default.nix
+++ b/pkgs/development/python-modules/jupyterlab-widgets/default.nix
@@ -4,12 +4,12 @@
 
 buildPythonPackage rec {
   pname = "jupyterlab-widgets";
-  version = "3.0.7";
+  version = "3.0.9";
 
   src = fetchPypi {
     pname = "jupyterlab_widgets";
     inherit version;
-    hash = "sha256-w6UO1b9Sigx6hpCWUDr1RwL4bdodtGmu4cktwMAbQ8o=";
+    hash = "sha256-YAWk6XTHvu6EBg/fujQaMhhJUEbeiuPsZIiOX+Gf20w=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jupyterlab/default.nix b/pkgs/development/python-modules/jupyterlab/default.nix
index 81c7f862f6ad..a99d4d468c95 100644
--- a/pkgs/development/python-modules/jupyterlab/default.nix
+++ b/pkgs/development/python-modules/jupyterlab/default.nix
@@ -20,14 +20,14 @@
 
 buildPythonPackage rec {
   pname = "jupyterlab";
-  version = "4.0.3";
+  version = "4.0.6";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-4U0c5GphMCgRHQ1Hah19awlAA7dGK6xmn1tHgxeryzk=";
+    hash = "sha256-bEOuWmof0v36/LNFQASVi95tp2Mxq7RM/8b55Daxm6E=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/jupyterlab_server/default.nix b/pkgs/development/python-modules/jupyterlab_server/default.nix
index 2ec4ccf47e7e..6deb3912730b 100644
--- a/pkgs/development/python-modules/jupyterlab_server/default.nix
+++ b/pkgs/development/python-modules/jupyterlab_server/default.nix
@@ -20,14 +20,14 @@
 
 buildPythonPackage rec {
   pname = "jupyterlab_server";
-  version = "2.24.0";
+  version = "2.25.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Tm+Z4KVXm7vDLkScTbsDlWHU8aeCfVczJz7VZzjyHwc=";
+    hash = "sha256-d8Lx8oLWEPleSW4g1b8dKncGgm37exjzN4rihw0nL7c=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/justnimbus/default.nix b/pkgs/development/python-modules/justnimbus/default.nix
index cc302cc5865b..ecea9ef4a549 100644
--- a/pkgs/development/python-modules/justnimbus/default.nix
+++ b/pkgs/development/python-modules/justnimbus/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "justnimbus";
-  version = "0.6.0";
+  version = "0.7.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -16,8 +16,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "kvanzuijlen";
     repo = pname;
-    rev = version;
-    hash = "sha256-uQ5Nc5sxqHeAuavyfX4Q6Umsd54aileJjFwOOU6X7Yg=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-arUdjZiEJx0L1YcCNxqlE4ItoTEzd/TYVgqDPIqomMg=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/kaggle/default.nix b/pkgs/development/python-modules/kaggle/default.nix
index e2cb5e76f046..ce68748ac7e2 100644
--- a/pkgs/development/python-modules/kaggle/default.nix
+++ b/pkgs/development/python-modules/kaggle/default.nix
@@ -1,4 +1,5 @@
 { buildPythonPackage
+, bleach
 , certifi
 , fetchPypi
 , lib
@@ -8,19 +9,19 @@
 , requests
 , tqdm
 , urllib3
-, bleach
 }:
 
 buildPythonPackage rec {
   pname = "kaggle";
-  version = "1.5.13";
+  version = "1.5.16";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-g2TFbDYSXLgZWHbZEdC8nvvBcxZ+ljuenveTeJupp/4=";
+    sha256 = "sha256-prNUL1kM80GlrUQdWuAhvpO9ZEQclsdYsVSQNJWjpgA=";
   };
 
   propagatedBuildInputs = [
+    bleach
     certifi
     python-dateutil
     python-slugify
diff --git a/pkgs/development/python-modules/kaptan/default.nix b/pkgs/development/python-modules/kaptan/default.nix
index 5597980acde1..c86e2a2d6f3a 100644
--- a/pkgs/development/python-modules/kaptan/default.nix
+++ b/pkgs/development/python-modules/kaptan/default.nix
@@ -2,16 +2,18 @@
 , buildPythonPackage
 , fetchPypi
 , pyyaml
-, pytest
+, pytestCheckHook
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "kaptan";
   version = "0.6.0";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-EBMwpE/e3oiFhvMBC9FFwOxIpIBrxWQp+lSHpndAIfg=";
+    hash = "sha256-EBMwpE/e3oiFhvMBC9FFwOxIpIBrxWQp+lSHpndAIfg=";
   };
 
   postPatch = ''
@@ -20,9 +22,17 @@ buildPythonPackage rec {
     substituteInPlace requirements/base.txt --replace 'PyYAML>=3.13,<6' 'PyYAML>=3.13'
   '';
 
-  propagatedBuildInputs = [ pyyaml ];
+  nativeBuildInputs = [
+    setuptools
+  ];
 
-  nativeCheckInputs = [ pytest ];
+  propagatedBuildInputs = [
+    pyyaml
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
   meta = with lib; {
     description = "Configuration manager for python applications";
diff --git a/pkgs/development/python-modules/kbcstorage/default.nix b/pkgs/development/python-modules/kbcstorage/default.nix
index 199ab908efd7..04d5b17c55e9 100644
--- a/pkgs/development/python-modules/kbcstorage/default.nix
+++ b/pkgs/development/python-modules/kbcstorage/default.nix
@@ -4,6 +4,8 @@
 , pythonOlder
 
 # build
+, setuptools
+, setuptools-git-versioning
 , setuptools-scm
 
 # propagates
@@ -17,8 +19,8 @@
 }:
 buildPythonPackage rec {
   pname = "sapi-python-client";
-  version = "0.5.0";
-  format = "setuptools";
+  version = "0.7.1";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
@@ -26,12 +28,14 @@ buildPythonPackage rec {
     owner = "keboola";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-79v9quhzeNRXcm6Z7BhD76lTZtw+Z0T1yK3zhrdreXw=";
+    hash = "sha256-74sChw6eMkBtfHV6hiaaLNOr/J0Sa73LB93Z8muLaiI=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
 
   nativeBuildInputs = [
+    setuptools
+    setuptools-git-versioning
     setuptools-scm
   ];
 
diff --git a/pkgs/development/python-modules/keras/default.nix b/pkgs/development/python-modules/keras/default.nix
index a2a90aa851d3..f5275ea1a2a6 100644
--- a/pkgs/development/python-modules/keras/default.nix
+++ b/pkgs/development/python-modules/keras/default.nix
@@ -6,12 +6,14 @@
 
 buildPythonPackage rec {
   pname = "keras";
-  version = "2.11.0";
+  version = "2.14.0";
   format = "wheel";
 
   src = fetchPypi {
     inherit format pname version;
-    hash = "sha256-OMb/8OqaiwaicXc2VlySpzyM2bHCOecSXMsYi3hI9l4=";
+    hash = "sha256-10KdHSExzH6x8uouwzAifH2dONqz398ueN7+5OzEP80=";
+    python = "py3";
+    dist = "py3";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/keystoneauth1/default.nix b/pkgs/development/python-modules/keystoneauth1/default.nix
index 71faf0c4cf18..134f5af0632f 100644
--- a/pkgs/development/python-modules/keystoneauth1/default.nix
+++ b/pkgs/development/python-modules/keystoneauth1/default.nix
@@ -24,11 +24,11 @@
 
 buildPythonPackage rec {
   pname = "keystoneauth1";
-  version = "5.1.2";
+  version = "5.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-2fdIStX8mwu7fsw8vzeVoXBpT72EglEzHlS6SLvuzHI=";
+    hash = "sha256-AXwrm1mUU8kpQHUO27IPF2hxIbKJARS/nTbfFKBicRc=";
   };
 
   postPatch = ''
@@ -62,8 +62,11 @@ buildPythonPackage rec {
     testtools
   ];
 
+  # test_keystoneauth_betamax_fixture is incompatible with urllib3 2.0.0
+  # https://bugs.launchpad.net/keystoneauth/+bug/2020112
   checkPhase = ''
-    stestr run
+    stestr run \
+      -E "keystoneauth1.tests.unit.test_betamax_fixture.TestBetamaxFixture.test_keystoneauth_betamax_fixture"
   '';
 
   pythonImportsCheck = [ "keystoneauth1" ];
diff --git a/pkgs/development/python-modules/kiwisolver/default.nix b/pkgs/development/python-modules/kiwisolver/default.nix
index 0a985bc3dee0..bc905e77269a 100644
--- a/pkgs/development/python-modules/kiwisolver/default.nix
+++ b/pkgs/development/python-modules/kiwisolver/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "kiwisolver";
-  version = "1.4.4";
+  version = "1.4.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1BmXUZ/LpKHkbrSi/jG8EvD/lXsrgbrCjbJHRPMz6VU=";
+    hash = "sha256-5X5WOlf7IqFC2jTziswvwaXIZLwpyhUXqIq8lj5g1uw=";
   };
 
   env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-I${lib.getDev libcxx}/include/c++/v1";
diff --git a/pkgs/development/python-modules/klein/default.nix b/pkgs/development/python-modules/klein/default.nix
index 641388fbdd57..c19746970a71 100644
--- a/pkgs/development/python-modules/klein/default.nix
+++ b/pkgs/development/python-modules/klein/default.nix
@@ -1,35 +1,46 @@
 { lib
-, stdenv
-, attrs
 , buildPythonPackage
 , fetchFromGitHub
+, pythonOlder
+
+# build-system
+, setuptools
+, wheel
+
+# dependencies
+, attrs
 , hyperlink
-, hypothesis
 , incremental
-, python
-, pythonOlder
-, treq
 , tubes
 , twisted
-, typing-extensions
 , werkzeug
 , zope_interface
+
+# tests
+, idna
+, python
+, treq
 }:
 
 buildPythonPackage rec {
   pname = "klein";
-  version = "unstable-2022-06-26";
-  format = "setuptools";
+  version = "unstable-2023-09-05";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "twisted";
     repo = pname;
-    rev = "d8c2b92a3c77aa64c596696fb6f07172ecf94a74";
-    hash = "sha256-RDZqavkteUbARV78OctZtLIrE4RoYDVAanjwE5i/ZeM=";
+    rev = "44b356ede27a667252ae5392014c802f0492c017";
+    hash = "sha256-zHdyyx5IseFWr25BGLL0dDM8/5BDehsvbxIci+DEo9s=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+    wheel
+  ];
+
   propagatedBuildInputs = [
     attrs
     hyperlink
@@ -38,17 +49,17 @@ buildPythonPackage rec {
     tubes
     werkzeug
     zope_interface
-  ] ++ lib.optionals (pythonOlder "3.8") [
-    typing-extensions
   ];
 
   nativeCheckInputs = [
-    hypothesis
+    idna
     treq
   ];
 
   checkPhase = ''
+    runHook preCheck
     ${python.interpreter} -m twisted.trial klein
+    runHook postCheck
   '';
 
   pythonImportsCheck = [
@@ -56,6 +67,7 @@ buildPythonPackage rec {
   ];
 
   meta = with lib; {
+    changelog = "https://github.com/twisted/klein/releases/tag/${version}";
     description = "Klein Web Micro-Framework";
     homepage = "https://github.com/twisted/klein";
     license = licenses.mit;
diff --git a/pkgs/development/python-modules/kubernetes/default.nix b/pkgs/development/python-modules/kubernetes/default.nix
index 8e97d083cd9e..2b28f76d051a 100644
--- a/pkgs/development/python-modules/kubernetes/default.nix
+++ b/pkgs/development/python-modules/kubernetes/default.nix
@@ -24,7 +24,7 @@
 
 buildPythonPackage rec {
   pname = "kubernetes";
-  version = "26.1.0";
+  version = "27.2.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -33,7 +33,7 @@ buildPythonPackage rec {
     owner = "kubernetes-client";
     repo = "python";
     rev = "refs/tags/v${version}";
-    hash = "sha256-2QkQGZ4Dho2PykH90ijosWWBzhQoCHoWhRL3ruOiDBg=";
+    hash = "sha256-KqQ7wUu5Se4WYOdtk9vMU3M5oyz0WgIltSEliCD7s10=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/labelbox/default.nix b/pkgs/development/python-modules/labelbox/default.nix
index f5c9bdfed9e2..c0b635abf460 100644
--- a/pkgs/development/python-modules/labelbox/default.nix
+++ b/pkgs/development/python-modules/labelbox/default.nix
@@ -30,7 +30,7 @@
 
 buildPythonPackage rec {
   pname = "labelbox";
-  version = "3.38.0";
+  version = "3.52.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -39,7 +39,7 @@ buildPythonPackage rec {
     owner = "Labelbox";
     repo = "labelbox-python";
     rev = "refs/tags/v.${version}";
-    hash = "sha256-AyQPI19As49GML3kVXtHtRNOKthrpkQ7MCmww+F6owc=";
+    hash = "sha256-t0Q+6tnUPK2oqjdAwwYeSebgn2EQ1fBivw115L8ndOg=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/labgrid/default.nix b/pkgs/development/python-modules/labgrid/default.nix
index bcae9b88398d..0e96bf2fe9ae 100644
--- a/pkgs/development/python-modules/labgrid/default.nix
+++ b/pkgs/development/python-modules/labgrid/default.nix
@@ -23,13 +23,13 @@
 
 buildPythonPackage rec {
   pname = "labgrid";
-  version = "0.4.1";
+  version = "23.0.3";
 
   src = fetchFromGitHub {
     owner = "labgrid-project";
     repo = "labgrid";
-    rev = "v${version}";
-    sha256 = "0ih04lh1q3dysps4vfmk2rhqqrsimssadsxvbxdsnim2yihrrw47";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-yhlBqqCLOt6liw4iv8itG6E4QfIa7cW76QJqefUM5dw=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/langchain/default.nix b/pkgs/development/python-modules/langchain/default.nix
index 865ce51b07db..6f77951ccec5 100644
--- a/pkgs/development/python-modules/langchain/default.nix
+++ b/pkgs/development/python-modules/langchain/default.nix
@@ -86,7 +86,7 @@
 
 buildPythonPackage rec {
   pname = "langchain";
-  version = "0.0.285";
+  version = "0.0.291";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -95,7 +95,7 @@ buildPythonPackage rec {
     owner = "hwchase17";
     repo = "langchain";
     rev = "refs/tags/v${version}";
-    hash = "sha256-3vOfwn8qvPd9dPRnsX14bVSLQQKHLPS5r15S8yAQFpw=";
+    hash = "sha256-Ilmu4l+DCu2soX5kANegk/DMvr2x9AXUcQ1aZOKbQJc=";
   };
 
   sourceRoot = "${src.name}/libs/langchain";
diff --git a/pkgs/development/python-modules/langchainplus-sdk/default.nix b/pkgs/development/python-modules/langchainplus-sdk/default.nix
index 1ea97ccdb11e..8747c0a8d9e8 100644
--- a/pkgs/development/python-modules/langchainplus-sdk/default.nix
+++ b/pkgs/development/python-modules/langchainplus-sdk/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "langchainplus-sdk";
-  version = "0.0.20";
+  version = "0.0.21";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -18,7 +18,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     inherit version;
     pname = "langchainplus_sdk";
-    hash = "sha256-PTAOLjKQ9ozJ2ELAWflFjeumDndsnnkDCWiMrRv7shk=";
+    hash = "sha256-frjZnQnOe6IHKrQk+Q/xMc5Akb+eBQ/eBzP545Fq6Xk=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/langsmith/default.nix b/pkgs/development/python-modules/langsmith/default.nix
index cdb89dc49121..062815772653 100644
--- a/pkgs/development/python-modules/langsmith/default.nix
+++ b/pkgs/development/python-modules/langsmith/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "langsmith";
-  version = "0.0.35";
+  version = "0.0.37";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "langchain-ai";
     repo = "langsmith-sdk";
     rev = "refs/tags/v${version}";
-    hash = "sha256-TR4vBsRImMLs7CTlBt1NHL+n65jXxBNbOY7wIlfFBfM=";
+    hash = "sha256-xtyGL1Voyoik3fN//xhPNetC+yera4Wd+DZJTnLhW7g=";
   };
 
   sourceRoot = "${src.name}/python";
diff --git a/pkgs/development/python-modules/lark/default.nix b/pkgs/development/python-modules/lark/default.nix
index b5ba6c7583f1..3158b626c2a6 100644
--- a/pkgs/development/python-modules/lark/default.nix
+++ b/pkgs/development/python-modules/lark/default.nix
@@ -1,23 +1,38 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, python
+, fetchpatch
 , regex
 , pytestCheckHook
 , js2py
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "lark";
-  version = "1.1.5";
+  version = "1.1.7";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "lark-parser";
     repo = "lark";
     rev = "refs/tags/${version}";
-    hash = "sha256-drvF+0PSOdrha2rfpntrM8xIbeb0S7eNtfioxkdjEKw=";
+    hash = "sha256-k74tozIgJuwtUqKKmYHlfLpCWyT2hdoygRJiIpw+GDE=";
   };
 
+  patches = [
+    # include .lark files in package data
+    # https://github.com/lark-parser/lark/pull/1308
+    (fetchpatch {
+      url = "https://github.com/lark-parser/lark/commit/656334cb8793fd4e08a12843eaced5a7bb518be3.patch";
+      hash = "sha256-pYeNnFfXJ8xkR0KsU/KMWJ8nF+BhP9PXEANiVhT254s=";
+    })
+  ];
+
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   # Optional import, but fixes some re known bugs & allows advanced regex features
   propagatedBuildInputs = [ regex ];
 
diff --git a/pkgs/development/python-modules/ledger-bitcoin/default.nix b/pkgs/development/python-modules/ledger-bitcoin/default.nix
index edfc9c7f22f2..afffe79b26bc 100644
--- a/pkgs/development/python-modules/ledger-bitcoin/default.nix
+++ b/pkgs/development/python-modules/ledger-bitcoin/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "ledger-bitcoin";
-  version = "0.2.1";
+  version = "0.2.2";
   format = "pyproject";
 
   src = fetchPypi {
     inherit version;
     pname = "ledger_bitcoin";
-    hash = "sha256-AWl/q2MzzspNIo6yf30S92PgM/Ygsb+1lJsg7Asztso=";
+    hash = "sha256-MEZuwIthIOwBkRdR7dEsEznO+GVBeOf7/5xmwNW1SvI=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/ledgercomm/default.nix b/pkgs/development/python-modules/ledgercomm/default.nix
index 092378a142b8..15bac008f0d5 100644
--- a/pkgs/development/python-modules/ledgercomm/default.nix
+++ b/pkgs/development/python-modules/ledgercomm/default.nix
@@ -2,20 +2,22 @@
 , buildPythonPackage
 , fetchPypi
 , setuptools
+, setuptools-scm
  }:
 
 buildPythonPackage rec {
   pname = "ledgercomm";
-  version = "1.1.2";
+  version = "1.2.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-izOPbwv+34Xq8mpq9+QRIGhd+z4pVnGJSMnYOktRVbs=";
+    hash = "sha256-HunJjIRa3IpSL/3pZPf6CroLxEK/l7ihh737VOAILgU=";
   };
 
   nativeBuildInputs = [
     setuptools
+    setuptools-scm
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/libarchive-c/default.nix b/pkgs/development/python-modules/libarchive-c/default.nix
index 943ed138f991..43f2e11ef3df 100644
--- a/pkgs/development/python-modules/libarchive-c/default.nix
+++ b/pkgs/development/python-modules/libarchive-c/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "libarchive-c";
-  version = "4.0";
+  version = "5.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "Changaco";
     repo = "python-${pname}";
-    rev = version;
-    sha256 = "1ar7lj1lpisklq2q07d95yhlbfq25g9g61hcj8whj17mq8vrvml1";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-8e3Tnek5q5NJneSVIrbFNTQPjHZ7Ieb14uiKjQwufTE=";
   };
 
   LC_ALL="en_US.UTF-8";
diff --git a/pkgs/development/python-modules/librosa/default.nix b/pkgs/development/python-modules/librosa/default.nix
index 03cdeea14e51..a93b6b0d99cb 100644
--- a/pkgs/development/python-modules/librosa/default.nix
+++ b/pkgs/development/python-modules/librosa/default.nix
@@ -33,7 +33,7 @@
 
 buildPythonPackage rec {
   pname = "librosa";
-  version = "0.10.0";
+  version = "0.10.1";
   format = "pyproject";
 
   src = fetchFromGitHub {
@@ -41,22 +41,23 @@ buildPythonPackage rec {
     repo = "librosa";
     rev = "refs/tags/${version}";
     fetchSubmodules = true; # for test data
-    hash = "sha256-MXzPIcbG8b1JwhEyAZG4DRObGaHq+ipVHMrZCzaxLdE=";
+    hash = "sha256-zbmU87hI9A1CVcBZ/5FU8z0t6SS4jfJk9bj9kLe/EHI=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   patches = [
-    # https://github.com/librosa/librosa/pull/1731
     (fetchpatch {
-      name = "support-scipy-1.11.patch";
-      url = "https://github.com/librosa/librosa/commit/12dee8eabed7df14c5622b52c05393ddfeb11f4b.patch";
-      hash = "sha256-JxTXU0Mc+QYpsafjoGLaIccD7EdCYJvIVianeosYpw4=";
+      # https://github.com/librosa/librosa/issues/1754
+      # https://github.com/librosa/librosa/pull/1755
+      name = "matplotlib-3.8-compat.patch";
+      url = "https://github.com/librosa/librosa/commit/beef47885ce1255b43b65e48ea2054ddace37c6c.patch";
+      hash = "sha256-rrnlUHXHY2me4BWGs3wFq8WJmz75CbXTWKFp3VdJKzE=";
     })
   ];
 
-  nativeBuildInputs = [
-    setuptools
-  ];
-
   postPatch = ''
     substituteInPlace setup.cfg \
       --replace "--cov-report term-missing --cov librosa --cov-report=xml " ""
diff --git a/pkgs/development/python-modules/lightgbm/default.nix b/pkgs/development/python-modules/lightgbm/default.nix
index 38ec2aaa5b40..d2fc8cbc13a2 100644
--- a/pkgs/development/python-modules/lightgbm/default.nix
+++ b/pkgs/development/python-modules/lightgbm/default.nix
@@ -2,33 +2,47 @@
 , stdenv
 , buildPythonPackage
 , fetchPypi
+
+# build-system
 , cmake
+, ninja
+, pathspec
+, pyproject-metadata
+, scikit-build-core
+
+# dependencies
+, llvmPackages
 , numpy
 , scipy
 , scikit-learn
-, llvmPackages ? null
 , pythonOlder
-, python
+
+# optionals: gpu
+, boost
+, cudatoolkit
 , ocl-icd
 , opencl-headers
-, boost
 , gpuSupport ? stdenv.isLinux
 }:
 
 buildPythonPackage rec {
   pname = "lightgbm";
-  version = "3.3.5";
-  format = "setuptools";
+  version = "4.1.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ELj73PhR5PaKHwLzjZm9xEx8f7mxpi3PkkoNKf9zOVw=";
+    hash = "sha256-vuWd0mmpOwk/LGENSmaDp+qHxj0+o1xiISPOLAILKrw=";
   };
 
   nativeBuildInputs = [
     cmake
+    ninja
+    pathspec
+    pyproject-metadata
+    scikit-build-core
   ];
 
   dontUseCmakeConfigure = true;
@@ -37,6 +51,7 @@ buildPythonPackage rec {
     llvmPackages.openmp
   ]) ++ (lib.optionals gpuSupport [
     boost
+    cudatoolkit
     ocl-icd
     opencl-headers
   ]);
@@ -47,13 +62,7 @@ buildPythonPackage rec {
     scikit-learn
   ];
 
-  buildPhase = ''
-    runHook preBuild
-
-    ${python.pythonForBuild.interpreter} setup.py bdist_wheel ${lib.optionalString gpuSupport "--gpu"}
-
-    runHook postBuild
-  '';
+  pypaBuildFlags = lib.optionalString gpuSupport "--config-setting=cmake.define.USE_CUDA=ON";
 
   postConfigure = ''
     export HOME=$(mktemp -d)
diff --git a/pkgs/development/python-modules/limits/default.nix b/pkgs/development/python-modules/limits/default.nix
index 8ee100670418..2146f1b9a0bc 100644
--- a/pkgs/development/python-modules/limits/default.nix
+++ b/pkgs/development/python-modules/limits/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "limits";
-  version = "3.5.0";
+  version = "3.6.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -34,7 +34,7 @@ buildPythonPackage rec {
     postFetch = ''
       rm "$out/limits/_version.py"
     '';
-    hash = "sha256-O4yENynvon9xM8F/r0NMSpSh6Hl2EoTcXgldrwzo24M=";
+    hash = "sha256-VLfFWFcwLgEEvPUKQ00QjEq1HN28OpE6Eu1eyF+TwXU=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/linear_operator/default.nix b/pkgs/development/python-modules/linear_operator/default.nix
index f42522016c1f..1bf11865dfc0 100644
--- a/pkgs/development/python-modules/linear_operator/default.nix
+++ b/pkgs/development/python-modules/linear_operator/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "linear_operator";
-  version = "0.5.1";
+  version = "0.5.2";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "cornellius-gp";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-7NkcvVDwFaLHBZZhq7aKY3cWxe90qeKmodP6cVsdrPM=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-OuE6jx9Q4IU+b2a+mrglRdBOReN1tt/thetNXxwk1GI=";
   };
 
   env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/linkify-it-py/default.nix b/pkgs/development/python-modules/linkify-it-py/default.nix
index 21c99442f7bd..660e3cd2d9b9 100644
--- a/pkgs/development/python-modules/linkify-it-py/default.nix
+++ b/pkgs/development/python-modules/linkify-it-py/default.nix
@@ -4,12 +4,13 @@
 , pythonOlder
 , pytestCheckHook
 , uc-micro-py
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "linkify-it-py";
-  version = "2.0.0";
-  format = "setuptools";
+  version = "2.0.2";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
@@ -17,13 +18,24 @@ buildPythonPackage rec {
     owner = "tsutsu3";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-3bgkhIC6tHl5zieiyllvqFCKwLms55m8MGt1xGhQ4Dk=";
+    hash = "sha256-e3k2RblqvzWSSIrJL6ib2dxFw7T5vXlN8DrCV1qEr6w=";
   };
 
-  propagatedBuildInputs = [ uc-micro-py ];
+  nativeBuildInputs = [
+    setuptools
+  ];
 
-  nativeCheckInputs = [ pytestCheckHook ];
-  pythonImportsCheck = [ "linkify_it" ];
+  propagatedBuildInputs = [
+    uc-micro-py
+  ];
+
+  pythonImportsCheck = [
+    "linkify_it"
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
   meta = with lib; {
     description = "Links recognition library with full unicode support";
diff --git a/pkgs/development/python-modules/linode-api/default.nix b/pkgs/development/python-modules/linode-api/default.nix
index 906f5eb40a06..4c1b77bf86a9 100644
--- a/pkgs/development/python-modules/linode-api/default.nix
+++ b/pkgs/development/python-modules/linode-api/default.nix
@@ -9,15 +9,15 @@
 
 buildPythonPackage rec {
   pname = "linode-api";
-  version = "5.0.0";
+  version = "5.7.2";
   disabled = pythonOlder "3.6";
 
   # Sources from Pypi exclude test fixtures
   src = fetchFromGitHub {
     owner = "linode";
     repo = "python-linode-api";
-    rev = version;
-    sha256 = "0lqi15vks4fxbki1l7n1bfzygjy3w17d9wchjxvp22ijmas44yai";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-RU/GyNYV05iYVNanMqKMmoksXWrxTQ2H2XvaIwSSslA=";
   };
 
   propagatedBuildInputs = [ requests ];
diff --git a/pkgs/development/python-modules/loguru/default.nix b/pkgs/development/python-modules/loguru/default.nix
index 75cc1f9b2c61..93e9d8937bd8 100644
--- a/pkgs/development/python-modules/loguru/default.nix
+++ b/pkgs/development/python-modules/loguru/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "loguru";
-  version = "0.7.0";
+  version = "0.7.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "Delgan";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-JwhJPX58KrPdX237L43o77spycLAVFv3K9njJiRK30Y=";
+    hash = "sha256-1xcPAOOhjFmWSxmPj6NICRur3ITOuQRNNKPJlfp89Jw=";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/m2r/default.nix b/pkgs/development/python-modules/m2r/default.nix
index 942699156a93..02dd3c540ac4 100644
--- a/pkgs/development/python-modules/m2r/default.nix
+++ b/pkgs/development/python-modules/m2r/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "m2r";
-  version = "0.2.1";
+  version = "0.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bf90bad66cda1164b17e5ba4a037806d2443f2a4d5ddc9f6a5554a0322aaed99";
+    sha256 = "sha256-qvtn/EnPsdieRqNEOsdH4V9LtC3yDtBPBnrZ777iVqs=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/magic-wormhole/default.nix b/pkgs/development/python-modules/magic-wormhole/default.nix
index 95635b94d505..d25daaf21bc0 100644
--- a/pkgs/development/python-modules/magic-wormhole/default.nix
+++ b/pkgs/development/python-modules/magic-wormhole/default.nix
@@ -2,6 +2,11 @@
 , stdenv
 , buildPythonPackage
 , fetchPypi
+
+# build-system
+, setuptools
+
+# dependencies
 , spake2
 , pynacl
 , six
@@ -9,11 +14,15 @@
 , twisted
 , autobahn
 , automat
-, hkdf
 , tqdm
 , click
 , humanize
 , txtorcon
+
+# optional-dependencies
+, noiseprotocol
+
+# tests
 , nettools
 , mock
 , magic-wormhole-transit-relay
@@ -23,13 +32,18 @@
 
 buildPythonPackage rec {
   pname = "magic-wormhole";
-  version = "0.12.0";
+  version = "0.13.0";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0q41j99718y7m95zg1vaybnsp31lp6lhyqkbv4yqz5ys6jixh3qv";
+    hash = "sha256-rDvWgoYnDn8UnAYUmo5Anl+jTX/rDoiESibSnu0tFRY=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
     spake2
     pynacl
@@ -38,25 +52,29 @@ buildPythonPackage rec {
     twisted
     autobahn
     automat
-    hkdf
     tqdm
     click
     humanize
     txtorcon
-  ] ++ autobahn.optional-dependencies.twisted
+  ]
+  ++ autobahn.optional-dependencies.twisted
   ++ twisted.optional-dependencies.tls;
 
+  passthru.optional-dependencies = {
+    dilation = [
+      noiseprotocol
+    ];
+  };
+
   nativeCheckInputs = [
     mock
     magic-wormhole-transit-relay
     magic-wormhole-mailbox-server
     pytestCheckHook
-  ];
+  ]
+  ++ passthru.optional-dependencies.dilation;
 
-  disabledTests = [
-    # Expected: (<class 'wormhole.errors.WrongPasswordError'>,) Got: Failure instance: Traceback (failure with no frames): <class 'wormhole.errors.LonelyError'>:
-    "test_welcome"
-  ] ++ lib.optionals stdenv.isDarwin [
+  disabledTests = lib.optionals stdenv.isDarwin [
     # These tests doesn't work within Darwin's sandbox
     "test_version"
     "test_text"
@@ -92,6 +110,7 @@ buildPythonPackage rec {
   '';
 
   meta = with lib; {
+    changelog = "https://github.com/magic-wormhole/magic-wormhole/blob/${version}/NEWS.md";
     description = "Securely transfer data between computers";
     homepage = "https://github.com/magic-wormhole/magic-wormhole";
     license = licenses.mit;
diff --git a/pkgs/development/python-modules/manifestoo-core/default.nix b/pkgs/development/python-modules/manifestoo-core/default.nix
index 3135ded66ebf..4d23928da1ac 100644
--- a/pkgs/development/python-modules/manifestoo-core/default.nix
+++ b/pkgs/development/python-modules/manifestoo-core/default.nix
@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "manifestoo-core";
-  version = "0.11.0";
+  version = "1.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit version;
     pname = "manifestoo_core";
-    hash = "sha256-ZZAJDOtGcYWm0yS5bMOUdM1Jf+kfurwiLsJwyTYPz/4=";
+    hash = "sha256-cnEbws2NDxVkLEgLsYw2VQQWP69nC1SVixl9a6vHPmo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/markdown-it-py/default.nix b/pkgs/development/python-modules/markdown-it-py/default.nix
index b1a031bd2a31..ed3df6f804eb 100644
--- a/pkgs/development/python-modules/markdown-it-py/default.nix
+++ b/pkgs/development/python-modules/markdown-it-py/default.nix
@@ -26,7 +26,7 @@
 
 buildPythonPackage rec {
   pname = "markdown-it-py";
-  version = "2.2.0";
+  version = "3.0.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
@@ -35,7 +35,7 @@ buildPythonPackage rec {
     owner = "executablebooks";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-qdRU1BxczFDGoIEtl0ZMkKNn4p5tec8YuPt5ZwX5fYM=";
+    hash = "sha256-cmjLElJA61EysTUFMVY++Kw0pI4wOIXOyCY3To9fpQc=";
   };
 
   # fix downstrem usage of markdown-it-py[linkify]
diff --git a/pkgs/development/python-modules/mashumaro/default.nix b/pkgs/development/python-modules/mashumaro/default.nix
index 97eeb09d7b8a..f898acad5144 100644
--- a/pkgs/development/python-modules/mashumaro/default.nix
+++ b/pkgs/development/python-modules/mashumaro/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "mashumaro";
-  version = "3.9.1";
+  version = "3.10";
   format = "pyproject";
   disabled = pythonOlder "3.7";
 
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     owner = "Fatal1ty";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-VDB6313lvKuLJFOnuzEaiiRLUBOvbdjfowgl3nvG8Y0=";
+    hash = "sha256-PvMEwIxurDGwYMCmNFThedxDY4vwATHYwMlXkucNuwM=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/matplotlib/default.nix b/pkgs/development/python-modules/matplotlib/default.nix
index e5df4ea7d4ea..4ac081e26a20 100644
--- a/pkgs/development/python-modules/matplotlib/default.nix
+++ b/pkgs/development/python-modules/matplotlib/default.nix
@@ -79,7 +79,7 @@ let
 in
 
 buildPythonPackage rec {
-  version = "3.7.2";
+  version = "3.8.0";
   pname = "matplotlib";
   format = "pyproject";
 
@@ -87,7 +87,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-qM25Hd2wRDa9LwmLj99LgTUuaM9NLGdW/MQUeRB2Vps=";
+    hash = "sha256-34UF4cGdXCwmr/NJeny9PM/C6XBD0eTbPnavo5kWS2k=";
   };
 
   env.XDG_RUNTIME_DIR = "/tmp";
diff --git a/pkgs/development/python-modules/maya/default.nix b/pkgs/development/python-modules/maya/default.nix
index 15e619558016..e96d66826583 100644
--- a/pkgs/development/python-modules/maya/default.nix
+++ b/pkgs/development/python-modules/maya/default.nix
@@ -1,21 +1,27 @@
 { lib
 , fetchFromGitHub
-, fetchpatch
 , buildPythonPackage
+
+# build-system
+, setuptools
+
+# dependencies
 , dateparser
 , humanize
+, tzlocal
 , pendulum
-, pytz
 , snaptime
-, tzlocal
-, pytestCheckHook
+, pytz
+
+# tests
 , freezegun
-, pytest-mock
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "maya";
   version = "0.6.1";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "kennethreitz";
@@ -24,16 +30,16 @@ buildPythonPackage rec {
     hash = "sha256-4fUyUqVQk/AcQL3xMnU1cQlF5yiD/N9NPAsUPuDTTNY=";
   };
 
-  # fix humanize incompatibility
-  # https://github.com/timofurrer/maya/commit/d9cd563d1b1ba16bcff4dacb4ef49edd4e32fd1d.patch
-  # ^ does not apply on 0.6.1
   postPatch = ''
+    # function was made private in humanize
     substituteInPlace maya/core.py \
-      --replace  \
-        "humanize.time.abs_timedelta" \
-        "humanize.time._abs_timedelta"
+      --replace "humanize.time.abs_timedelta" "humanize.time._abs_timedelta"
   '';
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
     dateparser
     humanize
@@ -44,15 +50,13 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
-    pytestCheckHook
     freezegun
-    pytest-mock
+    pytestCheckHook
   ];
 
   meta = with lib; {
     description = "Datetimes for Humans";
     homepage = "https://github.com/kennethreitz/maya";
     license = licenses.mit;
-    maintainers = with maintainers; [ pbsds ];
   };
 }
diff --git a/pkgs/development/python-modules/md2gemini/default.nix b/pkgs/development/python-modules/md2gemini/default.nix
index e50c405334c1..c0b6eec7f838 100644
--- a/pkgs/development/python-modules/md2gemini/default.nix
+++ b/pkgs/development/python-modules/md2gemini/default.nix
@@ -3,7 +3,7 @@
 
 buildPythonPackage rec {
   pname = "md2gemini";
-  version = "1.9.0";
+  version = "1.9.1";
 
   propagatedBuildInputs = [ mistune cjkwrap wcwidth ];
   nativeCheckInputs = [ pytestCheckHook ];
@@ -11,7 +11,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-d1zuK+NqoPS36ihh8qx9gOET94tApY+SGStsc/bITnU=";
+    hash = "sha256-XreDqqzH3UQ+RIBOrvHpaBb7PXcPPptjQx5cjpI+VzQ=";
   };
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/mdformat-gfm/default.nix b/pkgs/development/python-modules/mdformat-gfm/default.nix
index 2b48bcfa45de..de5a1d2ac68b 100644
--- a/pkgs/development/python-modules/mdformat-gfm/default.nix
+++ b/pkgs/development/python-modules/mdformat-gfm/default.nix
@@ -4,7 +4,6 @@
 , linkify-it-py
 , markdown-it-py
 , mdformat
-, mdformat-gfm
 , mdformat-tables
 , mdit-py-plugins
 , poetry-core
@@ -45,6 +44,11 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
+  disabledTests = [
+    "test_default_style__api"
+    "test_default_style__cli"
+  ];
+
   pythonImportsCheck = [
     "mdformat_gfm"
   ];
diff --git a/pkgs/development/python-modules/mdit-py-plugins/default.nix b/pkgs/development/python-modules/mdit-py-plugins/default.nix
index 772d9547088b..ad3e8580f11d 100644
--- a/pkgs/development/python-modules/mdit-py-plugins/default.nix
+++ b/pkgs/development/python-modules/mdit-py-plugins/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "mdit-py-plugins";
-  version = "0.3.5";
+  version = "0.4.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "executablebooks";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-U6Qh/1GklW9ZXBXmjPLuxga0JS/Cyga1iorcMEA+WP8=";
+    hash = "sha256-YBJu0vIOD747DrJLcqiZMHq34+gHdXeGLCw1OxxzIJ0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/mediapy/default.nix b/pkgs/development/python-modules/mediapy/default.nix
index c37aa8f867e5..2c58382a4779 100644
--- a/pkgs/development/python-modules/mediapy/default.nix
+++ b/pkgs/development/python-modules/mediapy/default.nix
@@ -11,14 +11,14 @@
 
 buildPythonPackage rec {
   pname = "mediapy";
-  version = "1.1.8";
+  version = "1.1.9";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-mVhBM+NQEkLYByp/kCPFJCAY26La5CWjcPl6PgclA9A=";
+    hash = "sha256-WUOxtE0NfXi0fpdasZTqixPhVV2+Refatvf6dgCb0Z8=";
   };
 
   nativeBuildInputs = [ flit-core ];
diff --git a/pkgs/development/python-modules/meep/default.nix b/pkgs/development/python-modules/meep/default.nix
index df0dd2cb1bb1..1e0dbb166839 100644
--- a/pkgs/development/python-modules/meep/default.nix
+++ b/pkgs/development/python-modules/meep/default.nix
@@ -33,13 +33,13 @@ assert !lapack.isILP64;
 
 buildPythonPackage rec {
   pname = "meep";
-  version = "1.25.0";
+  version = "1.27.0";
 
   src = fetchFromGitHub {
     owner = "NanoComp";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-4rIz2RXLSWzZbRuv8d4nidOa0ULYc4QHIdaYrGu1WkI=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-9ha6YPlvq2HUTuEqngFOAJUqCahBi7L7O8qsIMMfbrY=";
   };
 
   format = "other";
diff --git a/pkgs/development/python-modules/mesa/default.nix b/pkgs/development/python-modules/mesa/default.nix
index 2f441ca71106..fe4e8dd598d5 100644
--- a/pkgs/development/python-modules/mesa/default.nix
+++ b/pkgs/development/python-modules/mesa/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "mesa";
-  version = "1.2.1";
+  version = "2.1.1";
   format = "setuptools";
 
   # According to their docs, this library is for Python 3+.
@@ -21,7 +21,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "Mesa";
     inherit version;
-    hash = "sha256-SJiAuQSnatBnsZpwF3KyBTd1oiNjCpJEepq7t0QjoAQ=";
+    hash = "sha256-1wyXndB7xQy1jnfHsIqMQgsvmGYUhjDuSBB2M0GcXC4=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/meson-python/add-build-flags.sh b/pkgs/development/python-modules/meson-python/add-build-flags.sh
index d2535d1fd59a..d9327960eb1d 100644
--- a/pkgs/development/python-modules/meson-python/add-build-flags.sh
+++ b/pkgs/development/python-modules/meson-python/add-build-flags.sh
@@ -1,6 +1,10 @@
-# Add all of mesonFlags to -Csetup-args for pypa builds
-for f in $mesonFlags; do
-  pypaBuildFlags+=" -Csetup-args=$f"
-  # This requires pip>23.0.1, see: https://meson-python.readthedocs.io/en/latest/how-to-guides/config-settings.html
-  pipBuildFlags+=" --config-settings=setup-args=$f"
-done
+mesonPythonBuildFlagsHook() {
+  # Add all of mesonFlags to -Csetup-args for pypa builds
+  for f in $mesonFlags; do
+    pypaBuildFlags+=" -Csetup-args=$f"
+    # This requires pip>23.0.1, see: https://meson-python.readthedocs.io/en/latest/how-to-guides/config-settings.html
+    pipBuildFlags+=" --config-settings=setup-args=$f"
+  done
+}
+
+postConfigureHooks+=(mesonPythonBuildFlagsHook)
diff --git a/pkgs/development/python-modules/meson-python/default.nix b/pkgs/development/python-modules/meson-python/default.nix
index 4b45ee4e77d3..84031db71b80 100644
--- a/pkgs/development/python-modules/meson-python/default.nix
+++ b/pkgs/development/python-modules/meson-python/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname = "meson-python";
-  version = "0.13.1";
+  version = "0.14.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit version;
     pname = "meson_python";
-    hash = "sha256-Y7MXAAFCXEL6TP7a25BRy9KJJf+O7XxA02ugCZ48dhg=";
+    hash = "sha256-uWhmaQMmVE3+RSWDdTrD9DMTIn6f2UFnAajfkK8hIjQ=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/mido/default.nix b/pkgs/development/python-modules/mido/default.nix
index 9b9b25ee3768..65702b23c7ad 100644
--- a/pkgs/development/python-modules/mido/default.nix
+++ b/pkgs/development/python-modules/mido/default.nix
@@ -6,15 +6,18 @@
 , portmidi
 , python-rtmidi
 , pytestCheckHook
+, setuptools
+, setuptools-scm
 }:
 
 buildPythonPackage rec {
   pname = "mido";
-  version = "1.2.10";
+  version = "1.3.0";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "17b38a8e4594497b850ec6e78b848eac3661706bfc49d484a36d91335a373499";
+    sha256 = "sha256-hCguOs40vKP5hCINstvLmCRc/q+4VCYMAuAAdQ3Khqo=";
   };
 
   patches = [
@@ -24,6 +27,11 @@ buildPythonPackage rec {
     })
   ];
 
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+  ];
+
   propagatedBuildInputs = [
     python-rtmidi
   ];
diff --git a/pkgs/development/python-modules/mistletoe/default.nix b/pkgs/development/python-modules/mistletoe/default.nix
index 98844b1e8e51..c95a26eb6e04 100644
--- a/pkgs/development/python-modules/mistletoe/default.nix
+++ b/pkgs/development/python-modules/mistletoe/default.nix
@@ -1,20 +1,21 @@
 { lib
 , fetchPypi
 , buildPythonPackage
+, parameterized
 , pythonOlder
 , pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "mistletoe";
-  version = "1.0.1";
+  version = "1.2.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-sfia+weaGxpULp7ywI3UUKB6K9k1wDyrIsMorXyk2Og=";
+    hash = "sha256-fQwas3RwR9Fp+fxLkl0cuj9cE+rwuQw2W3LkflnQCgI=";
   };
 
   pythonImportsCheck = [
@@ -22,6 +23,7 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
+    parameterized
     pytestCheckHook
   ];
 
diff --git a/pkgs/development/python-modules/mizani/default.nix b/pkgs/development/python-modules/mizani/default.nix
index 8e9975fb223d..467da5dd80af 100644
--- a/pkgs/development/python-modules/mizani/default.nix
+++ b/pkgs/development/python-modules/mizani/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "mizani";
-  version = "0.9.2";
+  version = "0.10.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.9";
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "has2k1";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-6jdQxRqulE5hIzzmdr9kR5gsLrzt0lfJun5blJjTUY0=";
+    hash = "sha256-JrE12dU0Es4VwUZLcbB8mabifnpxZ7Qt68WJ22HvPm4=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/mkdocs-material/default.nix b/pkgs/development/python-modules/mkdocs-material/default.nix
index 7f45b1ecc7ae..59c433145b02 100644
--- a/pkgs/development/python-modules/mkdocs-material/default.nix
+++ b/pkgs/development/python-modules/mkdocs-material/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "mkdocs-material";
-  version = "9.1.13";
+  version = "9.3.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -28,7 +28,7 @@ buildPythonPackage rec {
     owner = "squidfunk";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-S+cCNcQR8Y1UGj+4Nfy9Z10N/9PRq13fSeR2YFntxWI=";
+    hash = "sha256-2Z1U71agXxkYp1OFYd/xInAfN5SVI9FQf39b8DkX10o=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/mkdocs-mermaid2-plugin/default.nix b/pkgs/development/python-modules/mkdocs-mermaid2-plugin/default.nix
index 54499fdbd07d..86037b0c18ec 100644
--- a/pkgs/development/python-modules/mkdocs-mermaid2-plugin/default.nix
+++ b/pkgs/development/python-modules/mkdocs-mermaid2-plugin/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "mkdocs-mermaid2-plugin";
-  version = "1.0.8";
+  version = "1.1.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "fralau";
     repo = "mkdocs-mermaid2-plugin";
     rev = "refs/tags/v${version}";
-    hash = "sha256-0h/EMfp6D14ZJcQe3U2r/RQ/VNejOK9bLP6AMNiB0Rc=";
+    hash = "sha256-9vYLkGUnL+rnmZntcgFzOvXQdf6angb9DRsmrBjnPUY=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix b/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix
index ff9326a8ba7d..f28fbf5ff7b6 100644
--- a/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix
+++ b/pkgs/development/python-modules/mkdocs-swagger-ui-tag/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "mkdocs-swagger-ui-tag";
-  version = "0.6.4";
+  version = "0.6.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = "Blueswen";
     repo = "mkdocs-swagger-ui-tag";
     rev = "refs/tags/v${version}";
-    hash = "sha256-/Spvj3lt7p+ZUbA/7xaQMLCSmHOOsoCRliqaAN+YU3g=";
+    hash = "sha256-08/nwJC7p5pwSXJicoJbZ8Xsc3yOvxWxzaCIS6aQ9uI=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/mkdocs/default.nix b/pkgs/development/python-modules/mkdocs/default.nix
index ac3c2c851c63..61c8bdcd13c1 100644
--- a/pkgs/development/python-modules/mkdocs/default.nix
+++ b/pkgs/development/python-modules/mkdocs/default.nix
@@ -14,8 +14,11 @@
 , importlib-metadata
 , jinja2
 , markdown
+, markupsafe
 , mergedeep
 , packaging
+, pathspec
+, platformdirs
 , pyyaml
 , pyyaml-env-tag
 , watchdog
@@ -28,7 +31,7 @@
 
 buildPythonPackage rec {
   pname = "mkdocs";
-  version = "1.4.2";
+  version = "1.5.2";
   format = "pyproject";
   disabled = pythonOlder "3.6";
 
@@ -36,29 +39,28 @@ buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-/NxiKbCd2acYcNe5ww3voM9SGVE2IDqknngqApkDbNs=";
+    hash = "sha256-9sV1bewsHVJEc2kTyGxDM6SjDTEKEc/HSY6gWBC5tvE=";
   };
 
-  postPatch = ''
-    substituteInPlace pyproject.toml \
-      --replace "Markdown >=3.2.1, <3.4" "Markdown"
-  '';
-
   nativeBuildInputs = [
     hatchling
   ];
 
   propagatedBuildInputs = [
     click
+    ghp-import
     jinja2
     markdown
+    markupsafe
     mergedeep
+    packaging
+    pathspec
+    platformdirs
     pyyaml
     pyyaml-env-tag
-    ghp-import
-    importlib-metadata
     watchdog
-    packaging
+  ] ++ lib.optionals (pythonOlder "3.10") [
+    importlib-metadata
   ];
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/mkdocstrings/default.nix b/pkgs/development/python-modules/mkdocstrings/default.nix
index fbbdb91feb2d..d8fb50f586b2 100644
--- a/pkgs/development/python-modules/mkdocstrings/default.nix
+++ b/pkgs/development/python-modules/mkdocstrings/default.nix
@@ -8,13 +8,13 @@
 , mkdocs-autorefs
 , pymdown-extensions
 , pytestCheckHook
-, pdm-pep517
+, pdm-backend
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "mkdocstrings";
-  version = "0.21.2";
+  version = "0.23.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "mkdocstrings";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-pi0BEe/zhG/V9wh2CO91Cc7Mze93+2tbVo6/2LGQ6Nw=";
+    hash = "sha256-t7wxm600XgYl1jsqjOpZdWcmqR9qafdKTaz/xDPdDPY=";
   };
 
   postPatch = ''
@@ -33,7 +33,7 @@ buildPythonPackage rec {
   '';
 
   nativeBuildInputs = [
-    pdm-pep517
+    pdm-backend
   ];
 
   propagatedBuildInputs = [
@@ -61,6 +61,8 @@ buildPythonPackage rec {
   disabledTests = [
     # Not all requirements are available
     "test_disabling_plugin"
+    # Circular dependency on mkdocstrings-python
+    "test_extended_templates"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/mlflow/default.nix b/pkgs/development/python-modules/mlflow/default.nix
index 14f4b76b48cf..41ebc9545cef 100644
--- a/pkgs/development/python-modules/mlflow/default.nix
+++ b/pkgs/development/python-modules/mlflow/default.nix
@@ -38,14 +38,14 @@
 
 buildPythonPackage rec {
   pname = "mlflow";
-  version = "2.5.0";
+  version = "2.7.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-+ZKujqnHNQI0S69IxOxEeqnvv6iWW8CQho5hYyNPTrA=";
+    hash = "sha256-3q8PXydgjpUm1p//zKcMgirJDqKQpvPkuz36GyCbARE=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/mlxtend/default.nix b/pkgs/development/python-modules/mlxtend/default.nix
index 6f9294e83b13..0da165ada2b6 100644
--- a/pkgs/development/python-modules/mlxtend/default.nix
+++ b/pkgs/development/python-modules/mlxtend/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "mlxtend";
-  version = "0.21.0";
+  version = "0.22.0";
   disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "rasbt";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-7G4tIoQGS7/YPpAhUn0CRf8fl/DdjdqySPWgJEL0trA=";
+    hash = "sha256-YLCNLpg2qrdFon0/gdggJd9XovHwRHAdleBFQc18qzE=";
   };
 
   nativeCheckInputs = [ pytestCheckHook ];
diff --git a/pkgs/development/python-modules/mne-python/default.nix b/pkgs/development/python-modules/mne-python/default.nix
index 46bc25672e18..940c633d4115 100644
--- a/pkgs/development/python-modules/mne-python/default.nix
+++ b/pkgs/development/python-modules/mne-python/default.nix
@@ -20,7 +20,7 @@
 
 buildPythonPackage rec {
   pname = "mne-python";
-  version = "1.3.1";
+  version = "1.5.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -29,7 +29,7 @@ buildPythonPackage rec {
     owner = "mne-tools";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-jvrk6m1Cd5ig2LXq6sAIbHDhmtG1gH/7WNAc7oet+tg=";
+    hash = "sha256-djVQkj8ktIOxe1xmi+XuIvdS1WdDzozgTJNJhWAhuBo=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/mocket/default.nix b/pkgs/development/python-modules/mocket/default.nix
index ff8d2856cc99..49125a286e90 100644
--- a/pkgs/development/python-modules/mocket/default.nix
+++ b/pkgs/development/python-modules/mocket/default.nix
@@ -22,14 +22,14 @@
 
 buildPythonPackage rec {
   pname = "mocket";
-  version = "3.11.0";
+  version = "3.11.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-OIdLP3hHnPZ9MqrHt6G5t2SSO342+jTACgzxM6RjVYM=";
+    hash = "sha256-sEPLUN9nod4AKYcoCNQZ4FBblUCLCPV1dFOrNC6xDWo=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/mockfs/default.nix b/pkgs/development/python-modules/mockfs/default.nix
new file mode 100644
index 000000000000..234a3d14d696
--- /dev/null
+++ b/pkgs/development/python-modules/mockfs/default.nix
@@ -0,0 +1,47 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, setuptools
+, setuptools-scm
+, wheel
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "mockfs";
+  version = "1.1.4";
+  format = "pyproject";
+
+  src = fetchFromGitHub {
+    owner = "mockfs";
+    repo = "mockfs";
+    rev = "v${version}";
+    hash = "sha256-JwSkOI0dz9ZetfE0ZL3CthvcCSXGFYX+yQZy/oC6VBk=";
+  };
+
+  postPatch = ''
+    sed -i '/addopts/d' pytest.ini
+  '';
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+    wheel
+  ];
+
+  pythonImportsCheck = [ "mockfs" ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
+  meta = with lib; {
+    description = "A simple mock filesystem for use in unit tests";
+    homepage = "https://github.com/mockfs/mockfs";
+    changelog = "https://github.com/mockfs/mockfs/blob/${src.rev}/CHANGES.rst";
+    license = licenses.mit;
+    maintainers = with maintainers; [ ];
+  };
+}
diff --git a/pkgs/development/python-modules/moddb/default.nix b/pkgs/development/python-modules/moddb/default.nix
index 102410dc6bbb..a0205d5c4676 100644
--- a/pkgs/development/python-modules/moddb/default.nix
+++ b/pkgs/development/python-modules/moddb/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "moddb";
-  version = "0.8.1";
+  version = "0.9.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "ClementJ18";
     repo = "moddb";
     rev = "v${version}";
-    hash = "sha256-Pl/Wc0CL31+ZLFfy6yUfrZzsECifnEpWVGRHZVaFWG4=";
+    hash = "sha256-2t5QQAmSLOrdNCl0XdsFPdP2UF10/qq69DovqeQ1Vt8=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/mongoengine/default.nix b/pkgs/development/python-modules/mongoengine/default.nix
index cb0be3e5ea9f..c4b7b7135e2b 100644
--- a/pkgs/development/python-modules/mongoengine/default.nix
+++ b/pkgs/development/python-modules/mongoengine/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "mongoengine";
-  version = "0.26.0";
+  version = "0.27.0";
   disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "MongoEngine";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-mPz9Nyoyke++e9vBWSKunc9VGHCP8pbmldgKty5HIMA=";
+    hash = "sha256-UCd7RpsSNDKh3vgVRYrFYWYVLQuK7WI0n/Moukhq5dM=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/monty/default.nix b/pkgs/development/python-modules/monty/default.nix
index 37107a1b1b52..cebb9c382c7c 100644
--- a/pkgs/development/python-modules/monty/default.nix
+++ b/pkgs/development/python-modules/monty/default.nix
@@ -9,12 +9,13 @@
 , pytestCheckHook
 , pythonOlder
 , ruamel-yaml
+, torch
 , tqdm
 }:
 
 buildPythonPackage rec {
   pname = "monty";
-  version = "2023.4.10";
+  version = "2023.9.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -23,7 +24,7 @@ buildPythonPackage rec {
     owner = "materialsvirtuallab";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-9of56ErJ03hU+KqxUjR4IiyU4XLJoothSwODlzSWv9Y=";
+    hash = "sha256-VzOu0gLQcobWQs8uMFzI4CyN+1OVx94VqhJYB+rMpMI=";
   };
 
   postPatch = ''
@@ -43,6 +44,7 @@ buildPythonPackage rec {
     pydantic
     pymongo
     pytestCheckHook
+    torch
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/more-itertools/default.nix b/pkgs/development/python-modules/more-itertools/default.nix
index 86a1b5d3d32d..df3804095665 100644
--- a/pkgs/development/python-modules/more-itertools/default.nix
+++ b/pkgs/development/python-modules/more-itertools/default.nix
@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "more-itertools";
-  version = "9.1.0";
+  version = "10.1.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-yrqjQa0DieqDwXqUVmpTrkydBzSYYeyxTcbQNFz5rF0=";
+    hash = "sha256-Ymw2n6DrN7rAKRvOglmzMv1ZrHkvpUl7WYNzCc1bEUo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/moto/default.nix b/pkgs/development/python-modules/moto/default.nix
index c30fc5311d04..73e95a6e1ead 100644
--- a/pkgs/development/python-modules/moto/default.nix
+++ b/pkgs/development/python-modules/moto/default.nix
@@ -33,6 +33,7 @@
 
 # tests
 , freezegun
+, py-partiql-parser
 , pytestCheckHook
 , pytest-xdist
 , sure
@@ -40,14 +41,14 @@
 
 buildPythonPackage rec {
   pname = "moto";
-  version = "4.1.3";
+  version = "4.2.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-yCAMyqlEDC6dqgvV4L12inGdtaLILqjXgvDj+gmjxeI=";
+    hash = "sha256-7jTEw/U5ANlTGAlGkgyduhJ6SD4u1A5tv5PUri52Dnw=";
   };
 
   nativeBuildInputs = [
@@ -83,6 +84,7 @@ buildPythonPackage rec {
 
   nativeCheckInputs = [
     freezegun
+    py-partiql-parser
     pytestCheckHook
     sure
   ];
@@ -105,12 +107,21 @@ buildPythonPackage rec {
     "--deselect=tests/test_iotdata/test_iotdata.py::test_basic"
     "--deselect=tests/test_iotdata/test_iotdata.py::test_delete_field_from_device_shadow"
     "--deselect=tests/test_iotdata/test_iotdata.py::test_publish"
-    "--deselect=tests/test_s3/test_server.py::test_s3_server_bucket_versioning"
+    "--deselect=tests/test_moto_api/recorder/test_recorder.py::TestRecorder::test_s3_upload_data"
+    "--deselect=tests/test_moto_api/recorder/test_recorder.py::TestRecorder::test_s3_upload_file_using_requests"
     "--deselect=tests/test_s3/test_multiple_accounts_server.py::TestAccountIdResolution::test_with_custom_request_header"
+    "--deselect=tests/test_s3/test_s3.py::test_presigned_put_url_with_approved_headers"
+    "--deselect=tests/test_s3/test_s3.py::test_presigned_put_url_with_custom_headers"
+    "--deselect=tests/test_s3/test_s3.py::test_put_chunked_with_v4_signature_in_body"
+    "--deselect=tests/test_s3/test_s3.py::test_upload_from_file_to_presigned_url"
+    "--deselect=tests/test_s3/test_server.py::test_s3_server_bucket_versioning"
+    "--deselect=tests/test_s3/test_server.py::test_s3_server_post_cors_multiple_origins"
 
     # Disable tests that require docker daemon
+    "--deselect=tests/test_core/test_docker.py::test_docker_is_running_and_available"
     "--deselect=tests/test_events/test_events_lambdatriggers_integration.py::test_creating_bucket__invokes_lambda"
     "--deselect=tests/test_s3/test_s3_lambda_integration.py::test_objectcreated_put__invokes_lambda"
+    "--deselect=tests/test_sqs/test_sqs_integration.py"
 
     # json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
     "--deselect=tests/test_cloudformation/test_cloudformation_stack_integration.py::test_lambda_function"
diff --git a/pkgs/development/python-modules/motor/default.nix b/pkgs/development/python-modules/motor/default.nix
index 704c8697ce8d..3e4cf4d574ad 100644
--- a/pkgs/development/python-modules/motor/default.nix
+++ b/pkgs/development/python-modules/motor/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "motor";
-  version = "3.1.1";
+  version = "3.3.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "mongodb";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-PD41ZyUFY4fYaO4Fo7kiTWcn1a6LOd81K3PWAAagmr4=";
+    hash = "sha256-iJz3JiW9cVT3G1rLQwWQXcPfPBRGsIwVLs4gauM+pYo=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/msal/default.nix b/pkgs/development/python-modules/msal/default.nix
index 123008106b8e..31febd203db8 100644
--- a/pkgs/development/python-modules/msal/default.nix
+++ b/pkgs/development/python-modules/msal/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "msal";
-  version = "1.23.0";
+  version = "1.24.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-JcmjOs+EMB+T0f2+nxqcYM04rw1f/9v6N4E4/HvB6Gs=";
+    hash = "sha256-fS7NrUGl9zuyuBPzBhpM9HySRiEQWo7RN1hvy52Pgn4=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/multipledispatch/default.nix b/pkgs/development/python-modules/multipledispatch/default.nix
index ed55b0421cd8..0953e46a5545 100644
--- a/pkgs/development/python-modules/multipledispatch/default.nix
+++ b/pkgs/development/python-modules/multipledispatch/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "multipledispatch";
-  version = "0.6.0";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a7ab1451fd0bf9b92cab3edbd7b205622fb767aeefb4fb536c2e3de9e0a38bea";
+    sha256 = "sha256-XIOZFUZcaCBsPpxHM1eQghbCg4O0JTYeXRRFlL+Fp+A=";
   };
 
   # No tests in archive
diff --git a/pkgs/development/python-modules/multiprocess/default.nix b/pkgs/development/python-modules/multiprocess/default.nix
index 962a70726adb..647281b8b4ee 100644
--- a/pkgs/development/python-modules/multiprocess/default.nix
+++ b/pkgs/development/python-modules/multiprocess/default.nix
@@ -6,14 +6,14 @@
 
 buildPythonPackage rec {
   pname = "multiprocess";
-  version = "0.70.14";
+  version = "0.70.15";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "uqfoundation";
     repo = pname;
     rev = "refs/tags/multiprocess-${version}";
-    hash = "sha256-pjYOEOI5No9gT0XchmH6FSJ9uDqEnaLj/PyHT2a90jo=";
+    hash = "sha256-fpyFBrQXy5TwbHmce3qg1RiM8JnH3J5skl3es1IQPiw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/munch/default.nix b/pkgs/development/python-modules/munch/default.nix
index f6ca7c1d6905..0ff62dcbee2b 100644
--- a/pkgs/development/python-modules/munch/default.nix
+++ b/pkgs/development/python-modules/munch/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "munch";
-  version = "2.5.0";
+  version = "4.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2d735f6f24d4dba3417fa448cae40c6e896ec1fdab6cdb5e6510999758a4dbd2";
+    sha256 = "sha256-VCyxUUYSYyFqTjfD/Zr8Ql/urziqowJc0qmB+ttCIjU=";
   };
 
   propagatedBuildInputs = [ six pbr ];
diff --git a/pkgs/development/python-modules/mypy/default.nix b/pkgs/development/python-modules/mypy/default.nix
index 90fafe527bd7..0ee96a6d690d 100644
--- a/pkgs/development/python-modules/mypy/default.nix
+++ b/pkgs/development/python-modules/mypy/default.nix
@@ -2,14 +2,12 @@
 , stdenv
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 , pythonOlder
 
 # build-system
 , setuptools
 , types-psutil
 , types-setuptools
-, types-typed-ast
 
 # propagates
 , mypy-extensions
@@ -32,7 +30,7 @@
 
 buildPythonPackage rec {
   pname = "mypy";
-  version = "1.4.1";
+  version = "1.5.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -41,23 +39,14 @@ buildPythonPackage rec {
     owner = "python";
     repo = "mypy";
     rev = "refs/tags/v${version}";
-    hash = "sha256-2PeE/L9J6J0IuUpHZasemM8xxefNJrdzYnutgJjevWQ=";
+    hash = "sha256-qs+axm2+UWNuWzLW8CI4qBV7k7Ra8gBajid8mYKDsso=";
   };
 
-  patches = [
-    (fetchpatch {
-      # pytest 7.4 compat
-      url = "https://github.com/python/mypy/commit/0a020fa73cf5339a80d81c5b44e17116a5c5307e.patch";
-      hash = "sha256-3HQPo+V7T8Gr92clXAt5QJUJPmhjnGjQgFq0qR0whfw=";
-    })
-  ];
-
   nativeBuildInputs = [
     mypy-extensions
     setuptools
     types-psutil
     types-setuptools
-    types-typed-ast
     typing-extensions
   ] ++ lib.optionals (pythonOlder "3.11") [
     tomli
diff --git a/pkgs/development/python-modules/mysqlclient/default.nix b/pkgs/development/python-modules/mysqlclient/default.nix
index 7b85fcf54b54..d821adc3bb25 100644
--- a/pkgs/development/python-modules/mysqlclient/default.nix
+++ b/pkgs/development/python-modules/mysqlclient/default.nix
@@ -1,11 +1,16 @@
-{ lib, buildPythonPackage, fetchPypi, libmysqlclient }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, libmysqlclient
+, pkg-config
+}:
 
 buildPythonPackage rec {
   pname = "mysqlclient";
-  version = "2.1.1";
+  version = "2.2.0";
 
   nativeBuildInputs = [
-    libmysqlclient
+    pkg-config
   ];
 
   buildInputs = [
@@ -17,7 +22,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-godX5Bn7Ed1sXtJXbsksPvqpOg98OeJjWG0e53nD14I=";
+    hash = "sha256-BDaERfnEh9irt6h449I+kj5gcsBKbDIPng3IqC77oU4=";
   };
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/myst-docutils/default.nix b/pkgs/development/python-modules/myst-docutils/default.nix
index 3a51d240c5ae..66c07489dfaa 100644
--- a/pkgs/development/python-modules/myst-docutils/default.nix
+++ b/pkgs/development/python-modules/myst-docutils/default.nix
@@ -13,12 +13,13 @@
 
 buildPythonPackage rec {
   pname = "myst-docutils";
-  version = "1.0.0";
+  version = "2.0.0";
   format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-fbh97Z/5TnnMHj2bGZ4UvJkPpYtrTTcFOgpLWgHUYk0=";
+    pname = "myst_docutils";
+    inherit version;
+    hash = "sha256-WmmPEg+bINmeId+pjR6bbp8qzjfSXfEel+sQEdPIu8Y=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/myst-parser/default.nix b/pkgs/development/python-modules/myst-parser/default.nix
index f2beeb85036f..0e6b2204ddbb 100644
--- a/pkgs/development/python-modules/myst-parser/default.nix
+++ b/pkgs/development/python-modules/myst-parser/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "myst-parser";
-  version = "1.0.0";
+  version = "2.0.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -28,7 +28,7 @@ buildPythonPackage rec {
     owner = "executablebooks";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-Kewd6/4yawpRuyCe8Na0BGUMo59tr2fc97VlGbVJ8mI=";
+    hash = "sha256-1BW7Z+0rs5Up+VZ3vDygnhLzE9Y2BqEMnTnflboweu0=";
   };
 
   nativeBuildInputs = [ flit-core ];
diff --git a/pkgs/development/python-modules/napalm/default.nix b/pkgs/development/python-modules/napalm/default.nix
index eabbadc1d614..9b835d52737a 100644
--- a/pkgs/development/python-modules/napalm/default.nix
+++ b/pkgs/development/python-modules/napalm/default.nix
@@ -1,58 +1,76 @@
-{ lib, buildPythonPackage, fetchFromGitHub, fetchpatch, setuptools, cffi
-, paramiko, requests, future, textfsm, jinja2, netaddr, pyyaml, pyeapi, netmiko
-, junos-eznc, ciscoconfparse, scp, lxml, ncclient, pytestCheckHook, ddt, mock
-, pythonOlder, invoke }:
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+
+# build-system
+, setuptools
+, cffi
+
+# dependencies
+, future
+, jinja2
+, junos-eznc
+, lxml
+, ncclient
+, netaddr
+, netmiko
+, netutils
+, paramiko
+, pyeapi
+, pyyaml
+, requests
+, scp
+, textfsm
+, ttp
+, ttp-templates
+, typing-extensions
+
+# tests
+, pytestCheckHook
+, ddt
+, mock
+ }:
 
 buildPythonPackage rec {
   pname = "napalm";
-  version = "3.4.1";
-  format = "setuptools";
+  version = "4.1.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "napalm-automation";
     repo = "napalm";
-    rev = version;
-    hash = "sha256-TNWRJtc6+VS6wgJGGvCPDoFQmOKQAyXdjFQo9bPJ2F8=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-JqjuYMJcP58UMn1pPYg7x8KpqCKQUs19Ng9HbI2iX38=";
   };
 
-  patches = [
-    # netmiko 4.0.0 support
-    (fetchpatch{
-      url = "https://github.com/napalm-automation/napalm/commit/4b8cc85db3236099a04f742cf71773e74d9dd70e.patch";
-      excludes = [ "requirements.txt" ];
-      hash = "sha256-DBKp+wiKd+/j2xAqaQL3UCcGQd6wnWcNTsNXBBt9c98=";
-    })
-    (fetchpatch{
-      url = "https://github.com/napalm-automation/napalm/commit/4a8b5b1823335dd79aa5269c038a1f08ecd35cdd.patch";
-      hash = "sha256-uiou/rzmnFf4wAvXwmUsGJx99GeHWKJB2JrMM1kLakM=";
-    })
+  nativeBuildInputs = [
+    setuptools
   ];
 
-  postPatch = ''
-    substituteInPlace requirements.txt \
-      --replace "netmiko>=3.3.0,<4.0.0" "netmiko"
-  '';
-
   propagatedBuildInputs = [
     cffi
-    paramiko
-    requests
     future
-    textfsm
-    invoke
     jinja2
+    junos-eznc
+    lxml
+    ncclient
     netaddr
-    pyyaml
-    pyeapi
     netmiko
-    junos-eznc
-    ciscoconfparse
+    # breaks infinite recursion
+    (netutils.override { napalm = null; })
+    paramiko
+    pyeapi
+    pyyaml
+    requests
     scp
     setuptools
-    lxml
-    ncclient
+    textfsm
+    ttp
+    ttp-templates
+    typing-extensions
   ];
 
   nativeCheckInputs = [ pytestCheckHook mock ddt ];
diff --git a/pkgs/development/python-modules/napari-npe2/default.nix b/pkgs/development/python-modules/napari-npe2/default.nix
index fc81042527b8..61cf2978a8e5 100644
--- a/pkgs/development/python-modules/napari-npe2/default.nix
+++ b/pkgs/development/python-modules/napari-npe2/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "napari-npe2";
-  version = "0.7.0";
+  version = "0.7.2";
 
   format = "pyproject";
 
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     owner = "napari";
     repo = "npe2";
     rev = "refs/tags/v${version}";
-    hash = "sha256-6kHyz7jMZO3385XaNJ4zFBoQiU1SIRyYZsUeMH5EBXo=";
+    hash = "sha256-PjoLocNTkcAnBNRbPi+MZqZtQ2bjWPIUVz0+k8nIn2A=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/nbclient/default.nix b/pkgs/development/python-modules/nbclient/default.nix
index 6c386ee01854..745de65f4b2e 100644
--- a/pkgs/development/python-modules/nbclient/default.nix
+++ b/pkgs/development/python-modules/nbclient/default.nix
@@ -19,7 +19,7 @@
 
 let nbclient = buildPythonPackage rec {
   pname = "nbclient";
-  version = "0.7.2";
+  version = "0.8.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -28,7 +28,7 @@ let nbclient = buildPythonPackage rec {
     owner = "jupyter";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-2H6Oi1tK/GrtfMTR1j12tZdRzQkFUxXzMSpfCtGPyWE=";
+    hash = "sha256-uBCYmrl/Zfw58hd12z20jLVwGSPv+M3fMo1mfV2GO/M=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/nbconvert/default.nix b/pkgs/development/python-modules/nbconvert/default.nix
index e7fb3dfba472..68d3de53cb3a 100644
--- a/pkgs/development/python-modules/nbconvert/default.nix
+++ b/pkgs/development/python-modules/nbconvert/default.nix
@@ -33,7 +33,7 @@ let
   };
 in buildPythonPackage rec {
   pname = "nbconvert";
-  version = "7.7.3";
+  version = "7.8.0";
 
   disabled = pythonOlder "3.8";
 
@@ -41,7 +41,7 @@ in buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-SlmWv1880WqgQxiXuhqkxkhCwgefQ0s9xrjEslLvM1U=";
+    hash = "sha256-9bwVoSR+FN1Bzu8MCjvHACDgFldusFeNpi8cW0+VBHk=";
   };
 
   # Add $out/share/jupyter to the list of paths that are used to search for
diff --git a/pkgs/development/python-modules/nbformat/default.nix b/pkgs/development/python-modules/nbformat/default.nix
index 354a937a6105..290663e78a81 100644
--- a/pkgs/development/python-modules/nbformat/default.nix
+++ b/pkgs/development/python-modules/nbformat/default.nix
@@ -15,13 +15,13 @@
 
 buildPythonPackage rec {
   pname = "nbformat";
-  version = "5.9.1";
+  version = "5.9.2";
   format = "pyproject";
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-On9S0EBjnL2KOJAhjIsP+5MhFYjFdEbJAJXjK6WIG10=";
+    hash = "sha256-X5i1uhmX3/F1534MF9XBCpbq7Sy9HeNTPR/DXV4REZI=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/netmiko/default.nix b/pkgs/development/python-modules/netmiko/default.nix
index 7258acb2aad1..513c3ade941f 100644
--- a/pkgs/development/python-modules/netmiko/default.nix
+++ b/pkgs/development/python-modules/netmiko/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "netmiko";
-  version = "4.1.2";
+  version = "4.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-9e3iooZw09/TRwBhRoZl+A+bSQbtIOaw+02eHJvmevw=";
+    hash = "sha256-et3m/j6mMzYij0moY2UMLYP7DmgODw0Vi1sPsExBAOE=";
   };
 
   buildInputs = [ setuptools ];
diff --git a/pkgs/development/python-modules/netutils/default.nix b/pkgs/development/python-modules/netutils/default.nix
index c1f43e64f8f0..517c90b3f449 100644
--- a/pkgs/development/python-modules/netutils/default.nix
+++ b/pkgs/development/python-modules/netutils/default.nix
@@ -3,6 +3,7 @@
 , buildPythonPackage
 , fetchFromGitHub
 , jinja2
+, jsonschema
 , napalm
 , poetry-core
 , pytestCheckHook
@@ -30,6 +31,12 @@ buildPythonPackage rec {
   ];
 
   propagatedBuildInputs = [
+    jsonschema
+    napalm
+  ];
+
+  passthru.optional-dependencies.optionals = [
+    jsonschema
     napalm
   ];
 
diff --git a/pkgs/development/python-modules/networkx/default.nix b/pkgs/development/python-modules/networkx/default.nix
index 5342b12dc8b2..b793bc57bf0e 100644
--- a/pkgs/development/python-modules/networkx/default.nix
+++ b/pkgs/development/python-modules/networkx/default.nix
@@ -11,12 +11,12 @@
 buildPythonPackage rec {
   pname = "networkx";
   # upgrade may break sage, please test the sage build or ping @timokau on upgrade
-  version = "3.0";
+  version = "3.1";
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-mpmSNFNTYYrpgznCtj2CAcOBwpRPOKKrSctFpMZn5BI=";
+    hash = "sha256-3jRjNUCPhN4Orab/n6+v/5vNoR8KDfqpMRM967FGq2E=";
   };
 
   propagatedBuildInputs = [ decorator setuptools ];
diff --git a/pkgs/development/python-modules/nilearn/default.nix b/pkgs/development/python-modules/nilearn/default.nix
index 5a79242daa06..921af46b15d5 100644
--- a/pkgs/development/python-modules/nilearn/default.nix
+++ b/pkgs/development/python-modules/nilearn/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "nilearn";
-  version = "0.10.0";
+  version = "0.10.1";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-zH8QaOA4B2Un6tG9NjQ2+I9ejSHou1ezI7MLkm/HVTo=";
+    hash = "sha256-koo2Tn7XfRXQK38icZfqfHj0Ty/ngP61VdbXz5Iy+EY=";
   };
 
   nativeCheckInputs = [ pytestCheckHook ];
diff --git a/pkgs/development/python-modules/nose2/default.nix b/pkgs/development/python-modules/nose2/default.nix
index 648d954be7d0..81fcdce60d1e 100644
--- a/pkgs/development/python-modules/nose2/default.nix
+++ b/pkgs/development/python-modules/nose2/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "nose2";
-  version = "0.12.0";
+  version = "0.13.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-lW55ub1VjuCLYgDAWtLHZGW344YMDAU3aGCJKFwyARM=";
+    hash = "sha256-V8aK1nbvS4i1BpSTfrUvSUOqHKJhB0tJCbbhYwRrRvA=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/notebook-shim/default.nix b/pkgs/development/python-modules/notebook-shim/default.nix
index 985cc63158e6..3bdb11416863 100644
--- a/pkgs/development/python-modules/notebook-shim/default.nix
+++ b/pkgs/development/python-modules/notebook-shim/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "notebook-shim";
-  version = "0.2.2";
+  version = "0.2.3";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "jupyter";
     repo = "notebook_shim";
     rev = "refs/tags/v${version}";
-    hash = "sha256-/z4vXSBqeL2wSqJ0kFNgU0TSGUGByhxHNya8EO55+7s=";
+    hash = "sha256-eAYZuNYqOMKC6joDbbKk4Q4nrfdbO7b+yZeSvMdWWrI=";
   };
 
   nativeBuildInputs = [ hatchling ];
diff --git a/pkgs/development/python-modules/notebook/default.nix b/pkgs/development/python-modules/notebook/default.nix
index 95f387653d97..0532d2472a7f 100644
--- a/pkgs/development/python-modules/notebook/default.nix
+++ b/pkgs/development/python-modules/notebook/default.nix
@@ -16,14 +16,14 @@
 
 buildPythonPackage rec {
   pname = "notebook";
-  version = "7.0.2";
+  version = "7.0.3";
   disabled = pythonOlder "3.8";
 
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1w1qB0GMgpvV9UM3zpk7cQUmHZAm+dP+aOm4qhog2po=";
+    hash = "sha256-B/PFBi/Q5uaYZEN6A0erxIXZkaroepLEfWWWmfVxtyk=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/numba/default.nix b/pkgs/development/python-modules/numba/default.nix
index a12524d46d1e..51a043b8d7f3 100644
--- a/pkgs/development/python-modules/numba/default.nix
+++ b/pkgs/development/python-modules/numba/default.nix
@@ -12,7 +12,6 @@
 , importlib-metadata
 , substituteAll
 , runCommand
-, fetchpatch
 
 , config
 
@@ -29,15 +28,16 @@ let
 in buildPythonPackage rec {
   # Using an untagged version, with numpy 1.25 support, when it's released
   # also drop the versioneer patch in postPatch
-  version = "unstable-2023-08-11";
+  version = "0.58.0rc2";
   pname = "numba";
   format = "setuptools";
+
   disabled = pythonOlder "3.8" || pythonAtLeast "3.12";
 
   src = fetchFromGitHub {
     owner = "numba";
     repo = "numba";
-    rev = "6f0c5060a69656319ab0bae1d8bb89484cd5631f";
+    rev = "refs/tags/${version}";
     # Upstream uses .gitattributes to inject information about the revision
     # hash and the refname into `numba/_version.py`, see:
     #
@@ -50,7 +50,7 @@ in buildPythonPackage rec {
     # use `forceFetchGit = true;`.` If in the future we'll observe the hash
     # changes too often, we can always use forceFetchGit, and inject the
     # relevant strings ourselves, using `sed` commands, in extraPostFetch.
-    hash = "sha256-34qEn/i2X6Xu1cjuiRrmrm/HryNoN+Am4A4pJ90srAE=";
+    hash = "sha256-ktFBjzd2vEahdr86lhVLVFEadCIhPP3hRF/EuZhHCC4=";
   };
   env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-I${lib.getDev libcxx}/include/c++/v1";
 
@@ -78,13 +78,6 @@ in buildPythonPackage rec {
       cuda_toolkit_lib_path = cudatoolkit.lib;
     })
   ];
-  # with untagged version we need to specify the correct version ourselves
-
-  postPatch = ''
-    substituteInPlace setup.py --replace "version=versioneer.get_version()" "version='0.57.1'"
-    substituteInPlace numba/_version.py \
-      --replace 'git_refnames = " (HEAD -> main)"' 'git_refnames = "tag: 0.57.1"'
-  '';
 
   postFixup = lib.optionalString cudaSupport ''
     find $out -type f \( -name '*.so' -or -name '*.so.*' \) | while read lib; do
diff --git a/pkgs/development/python-modules/numexpr/default.nix b/pkgs/development/python-modules/numexpr/default.nix
index 63d95622c061..6acc3e53f4e4 100644
--- a/pkgs/development/python-modules/numexpr/default.nix
+++ b/pkgs/development/python-modules/numexpr/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "numexpr";
-  version = "2.8.4";
+  version = "2.8.6";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1UMlN0GNGGkbkRXWFdbaoX7oJ1uu8+3xr7v4vGmAYUc=";
+    hash = "sha256-Yzb426P0VuQaT/w8l+tj2JxzWJ/24XBxQSJLkwJjJg0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix
index 344a458c9a87..d2d85bddf3b6 100644
--- a/pkgs/development/python-modules/numpy/default.nix
+++ b/pkgs/development/python-modules/numpy/default.nix
@@ -1,12 +1,11 @@
 { lib
 , stdenv
 , fetchPypi
-, fetchpatch
 , python
 , buildPythonPackage
 , gfortran
 , hypothesis
-, pytest
+, pytestCheckHook
 , typing-extensions
 , blas
 , lapack
@@ -42,24 +41,17 @@ let
   };
 in buildPythonPackage rec {
   pname = "numpy";
-  version = "1.25.1";
+  version = "1.25.2";
   format = "setuptools";
   disabled = pythonOlder "3.9" || pythonAtLeast "3.12";
 
   src = fetchPypi {
     inherit pname version;
     extension = "tar.gz";
-    hash = "sha256-mjqfOmFIDMCGEXtCaovYaGnCE/xAcuYG8BxOS2brkr8=";
+    hash = "sha256-/WCOGcjXxVAh3/1Dv+VJL6uMwQXMiYb4E/jDwEizh2A=";
   };
 
   patches = [
-    # f2py.f90mod_rules generates code with invalid function pointer conversions, which are
-    # clang 16 makes an error by default.
-    (fetchpatch {
-      url = "https://github.com/numpy/numpy/commit/609fee4324f3521d81a3454f5fcc33abb0d3761e.patch";
-      hash = "sha256-6Dbmf/RWvQJPTIjvchVaywHGcKCsgap/0wAp5WswuCo=";
-    })
-
     # Disable `numpy/core/tests/test_umath.py::TestComplexFunctions::test_loss_of_precision[complex256]`
     # on x86_64-darwin because it fails under Rosetta 2 due to issues with trig functions and
     # 80-bit long double complex numbers.
@@ -102,19 +94,41 @@ in buildPythonPackage rec {
   enableParallelBuilding = true;
 
   nativeCheckInputs = [
-    pytest
+    pytestCheckHook
     hypothesis
     typing-extensions
   ];
 
-  checkPhase = ''
-    runHook preCheck
-    pushd "$out"
-    ${python.interpreter} -c 'import numpy, sys; sys.exit(numpy.test("fast", verbose=10) is False)'
-    popd
-    runHook postCheck
+  preCheck = ''
+    cd "$out"
   '';
 
+  # https://github.com/numpy/numpy/blob/a277f6210739c11028f281b8495faf7da298dbef/numpy/_pytesttester.py#L180
+  pytestFlagsArray = [
+    "-m" "not\\ slow" # fast test suite
+  ];
+
+  # https://github.com/numpy/numpy/issues/24548
+  disabledTests = lib.optionals stdenv.isi686 [
+    "test_new_policy" # AssertionError: assert False
+    "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded
+    "test_float_remainder_overflow" # AssertionError: FloatingPointError not raised by divmod
+    "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1
+  ] ++ lib.optionals stdenv.isAarch32 [
+    "test_impossible_feature_enable" # AssertionError: Failed to generate error
+    "test_features" # AssertionError: Failure Detection
+    "test_new_policy" # AssertionError: assert False
+    "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded
+    "test_unary_spurious_fpexception"#  AssertionError: Got warnings: [<warnings.WarningMessage object at 0xd1197430>]
+    "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1
+    "test_real" # AssertionError: selectedrealkind(16): expected 10 but got -1
+    "test_quad_precision" # AssertionError: selectedrealkind(32): expected 16 but got -1
+    "test_big_arrays" # ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger tha...
+    "test_multinomial_pvals_float32" # Failed: DID NOT RAISE <class 'ValueError'>
+  ] ++ lib.optionals stdenv.isAarch64 [
+    "test_big_arrays" # OOM on a 16G machine
+  ];
+
   passthru = {
     # just for backwards compatibility
     blas = blas.provider;
diff --git a/pkgs/development/python-modules/nutils/default.nix b/pkgs/development/python-modules/nutils/default.nix
index da52ca153e48..421131e7f8e2 100644
--- a/pkgs/development/python-modules/nutils/default.nix
+++ b/pkgs/development/python-modules/nutils/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "nutils";
-  version = "7.3";
+  version = "8.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "evalf";
     repo = "nutils";
     rev = "refs/tags/v${version}";
-    hash = "sha256-3VtQFnR8vihxoIyRkbE1a1Rs8Np3/79PWNKReTBZDg8=";
+    hash = "sha256-6VvzUKKUB5SkmvC7PFPqGayc51t3PTMPwrxgZI5+jHA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/okta/default.nix b/pkgs/development/python-modules/okta/default.nix
index f2e19e4a6340..d6068b59e043 100644
--- a/pkgs/development/python-modules/okta/default.nix
+++ b/pkgs/development/python-modules/okta/default.nix
@@ -22,14 +22,14 @@
 
 buildPythonPackage rec {
   pname = "okta";
-  version = "2.9.2";
+  version = "2.9.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-kbzqriybzN/86vov3Q+kH2lj9plK1GzWPlc/Nc/nWF0=";
+    hash = "sha256-mOKVCRp8cLY7p0AVbvphWdB3II6eB6HlN8i1HrVUH+o=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/onnxconverter-common/default.nix b/pkgs/development/python-modules/onnxconverter-common/default.nix
index d45d82da0e3a..dfe5a03e7cc7 100644
--- a/pkgs/development/python-modules/onnxconverter-common/default.nix
+++ b/pkgs/development/python-modules/onnxconverter-common/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "onnxconverter-common";
-  version = "1.13.0";
+  version = "1.14.0";
 
   format = "setuptools";
 
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "microsoft";
     repo = "onnxconverter-common";
     rev = "refs/tags/v${version}";
-    hash = "sha256-VT9ly0d0Yhw1J6C521oUyaCx4WtFSdpyk8EdIKlre3c=";
+    hash = "sha256-NbHyjLcr/Gq1zRiJW3ZBpEVQGVQGhp7SmfVd5hBIi2o=";
   };
 
   propagatedBuildInputs = [
@@ -29,6 +29,10 @@ buildPythonPackage rec {
     onnx
   ];
 
+  pythonImportsCheck = [
+    "onnxconverter_common"
+  ];
+
   nativeCheckInputs = [
     onnxruntime
     unittestCheckHook
diff --git a/pkgs/development/python-modules/openaiauth/default.nix b/pkgs/development/python-modules/openaiauth/default.nix
index 68eead616b47..da10f6ffbe55 100644
--- a/pkgs/development/python-modules/openaiauth/default.nix
+++ b/pkgs/development/python-modules/openaiauth/default.nix
@@ -7,7 +7,7 @@
 
 buildPythonPackage rec {
   pname = "openaiauth";
-  version = "2.0.0";
+  version = "3.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -15,7 +15,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     inherit version;
     pname = "OpenAIAuth";
-    hash = "sha256-wmVR+cN/uJ75l62uzmHqpvEcnjzi6CU0kQ2e/5LxkBw=";
+    hash = "sha256-9SrptiheiM5s9YI6Ht68ahDGMFADWfBQgAWUBY3EEJ8=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/openapi-core/default.nix b/pkgs/development/python-modules/openapi-core/default.nix
index b9593b0e13c1..282c659291a4 100644
--- a/pkgs/development/python-modules/openapi-core/default.nix
+++ b/pkgs/development/python-modules/openapi-core/default.nix
@@ -28,7 +28,7 @@
 
 buildPythonPackage rec {
   pname = "openapi-core";
-  version = "0.18.0";
+  version = "0.18.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -37,7 +37,7 @@ buildPythonPackage rec {
     owner = "p1c2u";
     repo = "openapi-core";
     rev = "refs/tags/${version}";
-    hash = "sha256-2OcGaZQwzgxcwrXinmJjFc91620Ri0O79c8WZWfDdlQ=";
+    hash = "sha256-8zD4SDGH7Pcu54CcBTJ9Q2sbYfWP4OyNh5STatZ7pAk=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/openllm-core/default.nix b/pkgs/development/python-modules/openllm-core/default.nix
index 3f2c80cf0a57..e69054b1cbcd 100644
--- a/pkgs/development/python-modules/openllm-core/default.nix
+++ b/pkgs/development/python-modules/openllm-core/default.nix
@@ -22,7 +22,7 @@
 
 buildPythonPackage rec {
   pname = "openllm-core";
-  version = "0.2.27";
+  version = "0.3.4";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -31,7 +31,7 @@ buildPythonPackage rec {
     owner = "bentoml";
     repo = "OpenLLM";
     rev = "refs/tags/v${version}";
-    hash = "sha256-R69Qsx9360pJx+7oyhHdeAXUjTAdevPmaBl9gj+AA8U=";
+    hash = "sha256-uRXsIcsgu+EAxzUGKt9+PIoO1kvo6rWT569D5qXFrAQ=";
   };
 
   sourceRoot = "source/openllm-core";
diff --git a/pkgs/development/python-modules/openstackdocstheme/default.nix b/pkgs/development/python-modules/openstackdocstheme/default.nix
index 2d2fbc0dbdd8..00b2128db2aa 100644
--- a/pkgs/development/python-modules/openstackdocstheme/default.nix
+++ b/pkgs/development/python-modules/openstackdocstheme/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "openstackdocstheme";
-  version = "3.0.1";
+  version = "3.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-yB1CdOqWV7hEfUYdtqQ/fd4sNfy7Sp7YJbRQhK5egLk=";
+    hash = "sha256-PwSWLJr5Hjwz8cRXXutnE4Jc+vLcL3TJTZl6biK/4E4=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/opentelemetry-api/default.nix b/pkgs/development/python-modules/opentelemetry-api/default.nix
index 1ccb00617ac0..289784d4ac41 100644
--- a/pkgs/development/python-modules/opentelemetry-api/default.nix
+++ b/pkgs/development/python-modules/opentelemetry-api/default.nix
@@ -14,15 +14,15 @@
 let
   self = buildPythonPackage rec {
     pname = "opentelemetry-api";
-    version = "1.18.0";
+    version = "1.20.0";
     disabled = pythonOlder "3.7";
 
     # to avoid breakage, every package in opentelemetry-python must inherit this version, src, and meta
     src = fetchFromGitHub {
       owner = "open-telemetry";
       repo = "opentelemetry-python";
-      rev = "refs/tags/v${self.version}";
-      hash = "sha256-8xf4TqEkBeueejQBckFGwBNN4Gyo+/7/my6Z1Mnei5Q=";
+      rev = "refs/tags/v${version}";
+      hash = "sha256-tOg3G6BjHInY5TFYyS7/JA4mQajeP0b1QjrZBGqiqnM=";
     };
 
     sourceRoot = "${src.name}/opentelemetry-api";
diff --git a/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-common/default.nix b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-common/default.nix
index 71c742c0ba2a..8a43e9b4cda4 100644
--- a/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-common/default.nix
+++ b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-common/default.nix
@@ -2,6 +2,7 @@
 , buildPythonPackage
 , pythonOlder
 , hatchling
+, backoff
 , opentelemetry-api
 , opentelemetry-proto
 , opentelemetry-sdk
@@ -23,6 +24,7 @@ buildPythonPackage {
   ];
 
   propagatedBuildInputs = [
+    backoff
     opentelemetry-sdk
     opentelemetry-proto
   ];
diff --git a/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix b/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix
index 331a5e864374..4ee758ea564d 100644
--- a/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix
+++ b/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "opentelemetry-instrumentation";
-  version = "0.39b0";
+  version = "1.16.0";
   disabled = pythonOlder "3.7";
 
   # to avoid breakage, every package in opentelemetry-python-contrib must inherit this version, src, and meta
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "open-telemetry";
     repo = "opentelemetry-python-contrib";
     rev = "refs/tags/v${version}";
-    hash = "sha256-MPBOdurEQhA9BPRgVftejjtkvN/zRQEJDjQcS2QW3xc=";
+    hash = "sha256-6tGQjPBej2zv5yJN0S46le3kyD7q3TELYyDmyxlp5Wo=";
   };
 
   sourceRoot = "${src.name}/opentelemetry-instrumentation";
diff --git a/pkgs/development/python-modules/optimum/default.nix b/pkgs/development/python-modules/optimum/default.nix
index 0c8a9a738aa1..2742f9aab8bf 100644
--- a/pkgs/development/python-modules/optimum/default.nix
+++ b/pkgs/development/python-modules/optimum/default.nix
@@ -22,7 +22,7 @@
 
 buildPythonPackage rec {
   pname = "optimum";
-  version = "1.12.0";
+  version = "1.13.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -31,7 +31,7 @@ buildPythonPackage rec {
     owner = "huggingface";
     repo = "optimum";
     rev = "refs/tags/v${version}";
-    hash = "sha256-/Z7Gh8pAa5z96X7rdcuq6kxtpF53EFGIYOu1ft8w+XM=";
+    hash = "sha256-heTyGgHC9tfS0hFv83sdxVApcXa63GQLG9Nwgi30GFo=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/orange-canvas-core/default.nix b/pkgs/development/python-modules/orange-canvas-core/default.nix
index 2673151654a3..9c5381171e2f 100644
--- a/pkgs/development/python-modules/orange-canvas-core/default.nix
+++ b/pkgs/development/python-modules/orange-canvas-core/default.nix
@@ -8,22 +8,21 @@
 , docutils
 , filelock
 , lockfile
+, numpy
 , pytest-qt
 , pytestCheckHook
-, python
 , qasync
 , qt5
-, writeShellScript
-, xvfb-run
+, requests-cache
 }:
 
 buildPythonPackage rec {
   pname = "orange-canvas-core";
-  version = "0.1.31";
+  version = "0.1.32";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-kqh/c0pEWFLqf1BMD79li1MqLpH/4xrdTH9+/7YO/tg=";
+    hash = "sha256-UE5LHsG7BrJqC0rNRtUUqmXSPsYRVqodiU5DsB/6ECo=";
   };
 
   propagatedBuildInputs = [
@@ -34,7 +33,9 @@ buildPythonPackage rec {
     docutils
     filelock
     lockfile
+    numpy
     qasync
+    requests-cache
   ];
 
   pythonImportsCheck = [ "orangecanvas" ];
diff --git a/pkgs/development/python-modules/orange3/default.nix b/pkgs/development/python-modules/orange3/default.nix
index cff4a603c846..fa1204ffa733 100644
--- a/pkgs/development/python-modules/orange3/default.nix
+++ b/pkgs/development/python-modules/orange3/default.nix
@@ -44,7 +44,7 @@
 let
   self = buildPythonPackage rec {
     pname = "orange3";
-    version = "3.35.0";
+    version = "3.36.0";
     format = "pyproject";
 
     disabled = pythonOlder "3.7";
@@ -53,7 +53,7 @@ let
       owner = "biolab";
       repo = "orange3";
       rev = "refs/tags/${version}";
-      hash = "sha256-dj/Z4uOjA4nidd45dnHZDyHZP6Fy/MGC8asqOPV7U7A=";
+      hash = "sha256-0HIhBdufc46cTOSXa0koelTfZd5sY7QantmwGWggoCU=";
     };
 
     postPatch = ''
diff --git a/pkgs/development/python-modules/orjson/default.nix b/pkgs/development/python-modules/orjson/default.nix
index 934b65298f4e..5297cb920d33 100644
--- a/pkgs/development/python-modules/orjson/default.nix
+++ b/pkgs/development/python-modules/orjson/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "orjson";
-  version = "3.9.4";
+  version = "3.9.7";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -25,13 +25,13 @@ buildPythonPackage rec {
     owner = "ijl";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-WS4qynQmJIVdDf0sYK/HFVQ+F5nfoJwx/zzmaL6YTRc=";
+    hash = "sha256-VkCwvksUtgvFLSMy2fHLxrpZjcWYhincSM4fX/Gwl0I=";
   };
 
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src;
     name = "${pname}-${version}";
-    hash = "sha256-hGUXPTiKvKygxQzxXAO/+bD34eLnpkhQ7r/g27E+d4I=";
+    hash = "sha256-IwWbd7LE/t1UEo/bdC0bXl2K8hYyvDPbyHLBIurfb/8=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/ormar/default.nix b/pkgs/development/python-modules/ormar/default.nix
index 90b56b3cd4d7..e50d9b2788fa 100644
--- a/pkgs/development/python-modules/ormar/default.nix
+++ b/pkgs/development/python-modules/ormar/default.nix
@@ -27,7 +27,7 @@
 
 buildPythonPackage rec {
   pname = "ormar";
-  version = "0.12.1";
+  version = "0.12.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -36,7 +36,7 @@ buildPythonPackage rec {
     owner = "collerek";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-7d0vmYDN1EjzNWmylb/As4ywo8YYzQ88UwigIsVnwMM=";
+    hash = "sha256-Yd5ex0bcy61zq5Sn2dKeb98s/CMxUWnyGx6jFWQ3RUs=";
   };
 
   pythonRelaxDeps = [
diff --git a/pkgs/development/python-modules/oslo-config/default.nix b/pkgs/development/python-modules/oslo-config/default.nix
index b70de2a16e4f..50a544c1d7fb 100644
--- a/pkgs/development/python-modules/oslo-config/default.nix
+++ b/pkgs/development/python-modules/oslo-config/default.nix
@@ -14,12 +14,12 @@
 
 buildPythonPackage rec {
   pname = "oslo-config";
-  version = "9.1.1";
+  version = "9.2.0";
 
   src = fetchPypi {
     pname = "oslo.config";
     inherit version;
-    hash = "sha256-sHZUtT2HeSro5zmWKtcpxSnJk4oRjYkezp7jHVlxa8k=";
+    hash = "sha256-/+sBymWmA9VSWQXxqIozGb4Jzixqw3bEMSquwoMJWHg=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/oslo-db/default.nix b/pkgs/development/python-modules/oslo-db/default.nix
index 659d8b816bb9..a8052d4211c0 100644
--- a/pkgs/development/python-modules/oslo-db/default.nix
+++ b/pkgs/development/python-modules/oslo-db/default.nix
@@ -16,12 +16,12 @@
 
 buildPythonPackage rec {
   pname = "oslo-db";
-  version = "12.3.1";
+  version = "14.0.0";
 
   src = fetchPypi {
     pname = "oslo.db";
     inherit version;
-    hash = "sha256-Gd7FAkDwj7q1rnZzVOtZF1oUdz8CcdeDpX/KxJ5KbaE=";
+    hash = "sha256-nAipzYOOv/rSHrMBL64AKg93v5Vpb6RNBbG2OiJ+n8E=";
   };
 
   nativeBuildInputs = [ pbr ];
diff --git a/pkgs/development/python-modules/oslo-i18n/default.nix b/pkgs/development/python-modules/oslo-i18n/default.nix
index bfa608448146..e4d0f9f75d93 100644
--- a/pkgs/development/python-modules/oslo-i18n/default.nix
+++ b/pkgs/development/python-modules/oslo-i18n/default.nix
@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "oslo-i18n";
-  version = "6.0.0";
+  version = "6.1.0";
 
   src = fetchPypi {
     pname = "oslo.i18n";
     inherit version;
-    hash = "sha256-7RBoa3X3xgeCUXemaRVfTiWc459hQ6N19jWbvKpKNc0=";
+    hash = "sha256-4rgp8gW/HrYgR1bMNAJ9EZSUti0nH+7oYL+BbKegfq0=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/oslo-utils/default.nix b/pkgs/development/python-modules/oslo-utils/default.nix
index f076574bfd60..0d55f870e5fa 100644
--- a/pkgs/development/python-modules/oslo-utils/default.nix
+++ b/pkgs/development/python-modules/oslo-utils/default.nix
@@ -23,12 +23,12 @@
 
 buildPythonPackage rec {
   pname = "oslo-utils";
-  version = "6.1.0";
+  version = "6.2.1";
 
   src = fetchPypi {
     pname = "oslo.utils";
     inherit version;
-    hash = "sha256-drwBCNUKypcraP7IKY55G1+8vrmlGifGmGtBsKamLus=";
+    hash = "sha256-EyK6BfoP88Gor8cn/PlF31qoLWWEcn0uBK8Di1roQkQ=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/paddle2onnx/default.nix b/pkgs/development/python-modules/paddle2onnx/default.nix
index 171940104444..a3853022f0a6 100644
--- a/pkgs/development/python-modules/paddle2onnx/default.nix
+++ b/pkgs/development/python-modules/paddle2onnx/default.nix
@@ -9,7 +9,7 @@
 }:
 let
   pname = "paddle2onnx";
-  version = "1.0.6";
+  version = "1.0.9";
   format = "wheel";
   pyShortVersion = "cp${builtins.replaceStrings ["."] [""] python.pythonVersion}";
   src = fetchPypi {
@@ -18,7 +18,7 @@ let
     python = pyShortVersion;
     abi = pyShortVersion;
     platform = "manylinux_2_12_x86_64.manylinux2010_x86_64";
-    hash = "sha256-qHy6+RKh/gjy1mBmIj+1ENcHuIERkOeM6rrd5GNfX+Q=";
+    hash = "sha256-QnXfcbfzRt1sSagnDLP3ZRLH3KNqK76L+KvifTU6MJQ=";
   };
 in
 buildPythonPackage {
diff --git a/pkgs/development/python-modules/palettable/default.nix b/pkgs/development/python-modules/palettable/default.nix
index bd13c288894a..2f7cb7138c4c 100644
--- a/pkgs/development/python-modules/palettable/default.nix
+++ b/pkgs/development/python-modules/palettable/default.nix
@@ -2,19 +2,23 @@
 , buildPythonPackage
 , fetchPypi
 , pytestCheckHook
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "palettable";
-  version = "3.3.2";
-
-  format = "setuptools";
+  version = "3.3.3";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-aoZ8Qlov8ojqtDVr7ewA3gBt7jbJmmFHwuGwXeeJrJ8=";
+    sha256 = "sha256-CU3X2aX8HMpIVHc+XB/GoxWzO9WzqPRwZJKPrK8EkKg=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   nativeCheckInputs = [
     pytestCheckHook
   ];
diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix
index e64f61e0ddec..147366a2c514 100644
--- a/pkgs/development/python-modules/pandas/default.nix
+++ b/pkgs/development/python-modules/pandas/default.nix
@@ -1,13 +1,15 @@
 { lib
 , stdenv
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
 , pythonOlder
 
 # build-system
 , cython
+, meson-python
+, meson
 , oldest-supported-numpy
-, setuptools
+, pkg-config
 , versioneer
 , wheel
 
@@ -63,24 +65,42 @@
 
 buildPythonPackage rec {
   pname = "pandas";
-  version = "2.0.3";
+  version = "2.1.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-wC83Kojg0X820wk6ZExzz8F4jodqfEvLQCCndRLiBDw=";
+  src = fetchFromGitHub {
+    owner = "pandas-dev";
+    repo = "pandas";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-QwMW/qc1n51DaVhUnIaG0bdOvDitvvPh6ftoDawiYlc=";
   };
 
+  patches = [
+    # https://github.com/pandas-dev/pandas/issues/54888#issuecomment-1701186809
+    ./installer-fix.patch
+  ];
+
+  postPatch = ''
+    substituteInPlace pyproject.toml \
+      --replace "meson-python==0.13.1" "meson-python>=0.13.1" \
+      --replace "meson==1.0.1" "meson>=1.0.1"
+  '';
+
   nativeBuildInputs = [
-    setuptools
     cython
+    meson-python
+    meson
     numpy
-    oldest-supported-numpy
+    pkg-config
     versioneer
     wheel
-  ] ++ versioneer.optional-dependencies.toml;
+  ]
+  ++ versioneer.optional-dependencies.toml
+  ++ lib.optionals (pythonOlder "3.12") [
+    oldest-supported-numpy
+  ];
 
   enableParallelBuilding = true;
 
@@ -193,10 +213,9 @@ buildPythonPackage rec {
 
   pytestFlagsArray = [
     # https://github.com/pandas-dev/pandas/blob/main/test_fast.sh
-    "--skip-db"
-    "--skip-slow"
-    "--skip-network"
-    "-m" "'not single_cpu and not slow_arm'"
+    "-m" "'not single_cpu and not slow and not network and not db and not slow_arm'"
+    # https://github.com/pandas-dev/pandas/issues/54907
+    "--no-strict-data-files"
     "--numprocesses" "4"
   ];
 
diff --git a/pkgs/development/python-modules/pandas/installer-fix.patch b/pkgs/development/python-modules/pandas/installer-fix.patch
new file mode 100644
index 000000000000..b1659c9dbb3d
--- /dev/null
+++ b/pkgs/development/python-modules/pandas/installer-fix.patch
@@ -0,0 +1,25 @@
+diff --git a/pandas/_libs/meson.build b/pandas/_libs/meson.build
+index f302c649bc..ddce9ea2d6 100644
+--- a/pandas/_libs/meson.build
++++ b/pandas/_libs/meson.build
+@@ -113,8 +113,4 @@ foreach ext_name, ext_dict : libs_sources
+     )
+ endforeach
+ 
+-py.install_sources('__init__.py',
+-                    pure: false,
+-                    subdir: 'pandas/_libs')
+-
+ subdir('window')
+diff --git a/pandas/_libs/tslibs/meson.build b/pandas/_libs/tslibs/meson.build
+index 14d2eef46d..a862345c3a 100644
+--- a/pandas/_libs/tslibs/meson.build
++++ b/pandas/_libs/tslibs/meson.build
+@@ -30,7 +30,3 @@ foreach ext_name, ext_dict : tslibs_sources
+         install: true
+     )
+ endforeach
+-
+-py.install_sources('__init__.py',
+-                    pure: false,
+-                    subdir: 'pandas/_libs/tslibs')
diff --git a/pkgs/development/python-modules/parametrize-from-file/default.nix b/pkgs/development/python-modules/parametrize-from-file/default.nix
index 4306579bc517..79a073af9955 100644
--- a/pkgs/development/python-modules/parametrize-from-file/default.nix
+++ b/pkgs/development/python-modules/parametrize-from-file/default.nix
@@ -1,10 +1,8 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
 , flit-core
 , pytestCheckHook
-, coveralls
 , numpy
 , decopatch
 , more-itertools
@@ -16,23 +14,15 @@
 
 buildPythonPackage rec {
   pname = "parametrize-from-file";
-  version = "0.17.0";
+  version = "0.18.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit version;
     pname = "parametrize_from_file";
-    hash = "sha256-suxQht9YS+8G0RXCTuEahaI60daBda7gpncLmwySIbE=";
+    hash = "sha256-mYE8J7XWlvCS2H3kt0bB8dyPHFDqmW8NiH9UCrNccAU=";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "replace contextlib2-with-contextlib.patch";
-      url = "https://github.com/kalekundert/parametrize_from_file/commit/edee706770a713130da7c4b38b0a07de1bd79c1b.patch";
-      hash = "sha256-VkPKGkYYTB5XCavtEEnFJ+EdNUUhITz/euwlYAPC/tQ=";
-    })
-  ];
-
   # patch out coveralls since it doesn't provide us value
   preBuild = ''
     sed -i '/coveralls/d' ./pyproject.toml
diff --git a/pkgs/development/python-modules/paramiko/default.nix b/pkgs/development/python-modules/paramiko/default.nix
index 278556fe4885..278bb0583e35 100644
--- a/pkgs/development/python-modules/paramiko/default.nix
+++ b/pkgs/development/python-modules/paramiko/default.nix
@@ -5,23 +5,23 @@
 , fetchpatch
 , fetchPypi
 , gssapi
+, icecream
 , invoke
 , mock
 , pyasn1
 , pynacl
-, pytest-relaxed
 , pytestCheckHook
 , six
 }:
 
 buildPythonPackage rec {
   pname = "paramiko";
-  version = "2.11.0";
+  version = "3.3.1";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-AD5r7nwDTCH7sFG/g9wKnuQQYgTdPFMFTHFFLMTsOTg=";
+    hash = "sha256-ajd3qWGshtvvN1xfW41QAUoaltD9fwVKQ7yIATSw/3c=";
   };
 
   patches = [
@@ -31,11 +31,6 @@ buildPythonPackage rec {
       url = "https://github.com/paramiko/paramiko/commit/18e38b99f515056071fb27b9c1a4f472005c324a.patch";
       hash = "sha256-bPDghPeLo3NiOg+JwD5CJRRLv2VEqmSx1rOF2Tf8ZDA=";
     })
-    (fetchpatch {
-      name = "fix-sftp-tests.patch";
-      url = "https://github.com/paramiko/paramiko/commit/47cfed55575c21ac558e6d00a4ab1814406be651.patch";
-      hash = "sha256-H3nKT8+4CTEDoiqnlhFfuKnc/65GGfwwAm9H2lwrlK8=";
-    })
   ];
 
   propagatedBuildInputs = [
@@ -52,6 +47,7 @@ buildPythonPackage rec {
   };
 
   nativeCheckInputs = [
+    icecream
     mock
     pytestCheckHook
   ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
@@ -70,6 +66,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     homepage = "https://github.com/paramiko/paramiko/";
+    changelog = "https://github.com/paramiko/paramiko/blob/${version}/sites/www/changelog.rst";
     description = "Native Python SSHv2 protocol library";
     license = licenses.lgpl21Plus;
     longDescription = ''
diff --git a/pkgs/development/python-modules/parse-type/default.nix b/pkgs/development/python-modules/parse-type/default.nix
index e795ab3d49d3..e7ebfb5c63e4 100644
--- a/pkgs/development/python-modules/parse-type/default.nix
+++ b/pkgs/development/python-modules/parse-type/default.nix
@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "parse-type";
-  version = "0.6.0";
+  version = "0.6.2";
 
   src = fetchFromGitHub {
     owner = "jenisys";
     repo = "parse_type";
-    rev = "v${version}";
-    hash = "sha256-v79zzAAwXYoK2N8ZPl1L90qOwMRexAV2wCTMvo4vrSc=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-dunvcSi+nN5VruvRUPIEpkyUsmeS+kIYDfS8ibDR96s=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/parse/default.nix b/pkgs/development/python-modules/parse/default.nix
index 1ce34bfaab68..7956a2971b51 100644
--- a/pkgs/development/python-modules/parse/default.nix
+++ b/pkgs/development/python-modules/parse/default.nix
@@ -1,18 +1,27 @@
-{ lib, fetchPypi
-, buildPythonPackage, python
+{ lib, fetchFromGitHub
+, buildPythonPackage
+, setuptools
+, pytestCheckHook
 }:
 buildPythonPackage rec {
   pname = "parse";
-  version = "1.19.0";
+  version = "1.19.1";
+  format = "pyproject";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "9ff82852bcb65d139813e2a5197627a94966245c897796760a3a2a8eb66f020b";
+  src = fetchFromGitHub {
+    owner = "r1chardj0n3s";
+    repo = "parse";
+    rev = "refs/tags/${version}";
+    hash = "sha256-f08SlkGnwhSh0ajTKFqBAGGFvLj8nWBZVb6uClbRaP4=";
   };
 
-  checkPhase = ''
-    ${python.interpreter} test_parse.py
-  '';
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
   meta = with lib; {
     homepage = "https://github.com/r1chardj0n3s/parse";
diff --git a/pkgs/development/python-modules/parsedmarc/default.nix b/pkgs/development/python-modules/parsedmarc/default.nix
index 5002f564094c..912768621d10 100644
--- a/pkgs/development/python-modules/parsedmarc/default.nix
+++ b/pkgs/development/python-modules/parsedmarc/default.nix
@@ -41,7 +41,7 @@ let
 in
 buildPythonPackage rec {
   pname = "parsedmarc";
-  version = "8.4.2";
+  version = "8.6.1";
 
   disabled = pythonOlder "3.7";
 
@@ -49,7 +49,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-6dP9zQI0jYiE+lUhmFBNp8Sv9povm9Pa4R4TuzAmEQk=";
+    hash = "sha256-lnIhXkBodvLWVeqiwFcnU4M53zwWDmtFz+9TThQY63I=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/partd/default.nix b/pkgs/development/python-modules/partd/default.nix
index d633b8dfceb1..52e76646875e 100644
--- a/pkgs/development/python-modules/partd/default.nix
+++ b/pkgs/development/python-modules/partd/default.nix
@@ -12,12 +12,12 @@
 
 buildPythonPackage rec {
   pname = "partd";
-  version = "1.3.0";
+  version = "1.4.0";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-zpGrzcYXjWaLyqQxeRpakX2QI0HLGT9UP+RF1JRmBIU=";
+    hash = "sha256-qg/zXbvMgHrjdNtWMy9MGzm0b2e/KXX1FR4LQYau0NU=";
   };
 
   nativeCheckInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/path/default.nix b/pkgs/development/python-modules/path/default.nix
index 93f1fbcabe55..ee0329c4050d 100644
--- a/pkgs/development/python-modules/path/default.nix
+++ b/pkgs/development/python-modules/path/default.nix
@@ -1,27 +1,23 @@
 { lib
+, appdirs
 , buildPythonPackage
-, pythonOlder
 , fetchPypi
-
-# build time
-, setuptools-scm
-
-# tests
-, pytestCheckHook
-, appdirs
 , packaging
+, pytestCheckHook
+, pythonOlder
+, setuptools-scm
 }:
 
 buildPythonPackage rec {
   pname = "path";
-  version = "16.6.0";
+  version = "16.7.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-vqOBbh1U9OM6rHjSAxoLDtL5XmnbhbRdUfF9+XBx2mk=";
+    hash = "sha256-K0d/WIcDPzy+oc/YVT7mpqSY6yVAoZ9KoIKCKq3Oowo=";
   };
 
   nativeBuildInputs = [
@@ -45,6 +41,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Object-oriented file system path manipulation";
     homepage = "https://github.com/jaraco/path";
+    changelog = "https://github.com/jaraco/path/blob/v${version}/NEWS.rst";
     license = licenses.mit;
     maintainers = with maintainers; [ ];
   };
diff --git a/pkgs/development/python-modules/pathos/default.nix b/pkgs/development/python-modules/pathos/default.nix
index 6f60593054b1..cf9d9eaa48ca 100644
--- a/pkgs/development/python-modules/pathos/default.nix
+++ b/pkgs/development/python-modules/pathos/default.nix
@@ -1,16 +1,16 @@
 { lib
 , buildPythonPackage
-, fetchFromGitHub
 , dill
+, fetchFromGitHub
+, multiprocess
 , pox
 , ppft
-, multiprocess
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "pathos";
-  version = "0.3.0";
+  version = "0.3.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "uqfoundation";
     repo = pname;
     rev = "refs/tags/pathos-${version}";
-    hash = "sha256-Jc7pMVjOUSaZydRh87FsHivEAXpX9v6EbZNkHwPeq/Q=";
+    hash = "sha256-uQv1t3TRbvoQv86wNOdc5k0cgKt9kvnw5/DGbbbE46w=";
   };
 
   propagatedBuildInputs = [
@@ -39,6 +39,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Parallel graph management and execution in heterogeneous computing";
     homepage = "https://pathos.readthedocs.io/";
+    changelog = "https://github.com/uqfoundation/pathos/releases/tag/pathos-${version}";
     license = licenses.bsd3;
     maintainers = with maintainers; [ ];
   };
diff --git a/pkgs/development/python-modules/pathspec/default.nix b/pkgs/development/python-modules/pathspec/default.nix
index b43bcdb2382b..5b97cea17b79 100644
--- a/pkgs/development/python-modules/pathspec/default.nix
+++ b/pkgs/development/python-modules/pathspec/default.nix
@@ -14,12 +14,12 @@
 
 buildPythonPackage rec {
   pname = "pathspec";
-  version = "0.11.0";
+  version = "0.11.2";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ZNM41OCRTpHBeSMh5pB7Wlk/GrGFHef8JpVXohsw67w=";
+    hash = "sha256-4NjQrC8S2mGVbrIwa2n5RptC9N6w88tu1HuczpmWztM=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pcpp/default.nix b/pkgs/development/python-modules/pcpp/default.nix
index 704e979c2caa..0985d32afb55 100644
--- a/pkgs/development/python-modules/pcpp/default.nix
+++ b/pkgs/development/python-modules/pcpp/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "pcpp";
-  version = "1.21";
+  version = "1.30";
 
   src = fetchFromGitHub {
     owner = "ned14";
     repo = "pcpp";
-    rev = "v${version}";
-    sha256 = "0k52qyxzdngdhyn4sya2qn1w1a4ll0mcla4h4gb1v91fk4lw25dm";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-Fs+CMV4eRKcB+KdV93ncgcqaMnO5etnMY/ivmSJh3Wc=";
     fetchSubmodules = true;
   };
 
diff --git a/pkgs/development/python-modules/pdfplumber/default.nix b/pkgs/development/python-modules/pdfplumber/default.nix
index a43eaae34a80..37809324e275 100644
--- a/pkgs/development/python-modules/pdfplumber/default.nix
+++ b/pkgs/development/python-modules/pdfplumber/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "pdfplumber";
-  version = "0.9.0";
+  version = "0.10.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     owner = "jsvine";
     repo = "pdfplumber";
     rev = "refs/tags/v${version}";
-    hash = "sha256-cGTn1JTSp1YvksemjlvvToZcVauZ7GKINiNmG5f4zKg=";
+    hash = "sha256-nuHHEVOYm2/PkXIs9Ze5y5xyJMLkxqp3q3u4gV8Ks80=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/pdm-backend/default.nix b/pkgs/development/python-modules/pdm-backend/default.nix
index 96f626b24b61..0572a1e633b8 100644
--- a/pkgs/development/python-modules/pdm-backend/default.nix
+++ b/pkgs/development/python-modules/pdm-backend/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "pdm-backend";
-  version = "2.1.4";
+  version = "2.1.6";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "pdm-project";
     repo = "pdm-backend";
     rev = "refs/tags/${version}";
-    hash = "sha256-46HTamiy+8fiGVeviYqXsjwu+PEBE38y19cBVRc+zm0=";
+    hash = "sha256-ZEci8VeKYuORs9iAzaEqrtVBh9fMWHlLsFH1e5PRLwA=";
   };
 
   env.PDM_BUILD_SCM_VERSION = version;
diff --git a/pkgs/development/python-modules/peewee-migrate/default.nix b/pkgs/development/python-modules/peewee-migrate/default.nix
index da6f60403c33..dc7cefd00c0d 100644
--- a/pkgs/development/python-modules/peewee-migrate/default.nix
+++ b/pkgs/development/python-modules/peewee-migrate/default.nix
@@ -17,24 +17,26 @@
 
 buildPythonPackage rec {
   pname = "peewee-migrate";
-  version = "1.10.1";
+  version = "1.12.2";
   format = "pyproject";
 
+  disabled = pythonOlder "3.8";
+
   src = fetchFromGitHub {
     owner = "klen";
     repo = "peewee_migrate";
     rev = "refs/tags/${version}";
-    hash = "sha256-SBHeXHfhYjyXr+tODryKQfxZKy7l4ez5C6eU6FjS2qI=";
+    hash = "sha256-jxM2cvlDsoiUlVoxdS3wpUKlwMveMraiR431A8kIdgI=";
   };
 
-  nativeBuildInputs = [
-    poetry-core
-  ];
-
   postPatch = ''
     sed -i '/addopts/d' pyproject.toml
   '';
 
+  nativeBuildInputs = [
+    poetry-core
+  ];
+
   propagatedBuildInputs = [
     peewee
     click
@@ -49,6 +51,11 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
+  disabledTests = [
+    #  sqlite3.OperationalError: error in table order after drop column...
+    "test_migrator"
+  ];
+
   meta = with lib; {
     description = "Simple migration engine for Peewee";
     homepage = "https://github.com/klen/peewee_migrate";
diff --git a/pkgs/development/python-modules/peewee/default.nix b/pkgs/development/python-modules/peewee/default.nix
index 7f494813a19a..ca5d4f45677c 100644
--- a/pkgs/development/python-modules/peewee/default.nix
+++ b/pkgs/development/python-modules/peewee/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "peewee";
-  version = "3.16.2";
+  version = "3.16.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -24,7 +24,7 @@ buildPythonPackage rec {
     owner = "coleifer";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-eHTbVhgVqxMR3ZuaC6FPyYbxRpRBi53EfDqERpPBjVQ=";
+    hash = "sha256-QeJaGTKZHmzN+J8uUGXQJXCTINX7iP30u+s+GDP/kpQ=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/pg8000/default.nix b/pkgs/development/python-modules/pg8000/default.nix
index 9e0815ddfc71..ee580829bbe0 100644
--- a/pkgs/development/python-modules/pg8000/default.nix
+++ b/pkgs/development/python-modules/pg8000/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "pg8000";
-  version = "1.29.4";
+  version = "1.30.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-dtKqF1ejC8ceAwfa4Yw3TjNqaRI+awRuIGqWYR+iozA=";
+    hash = "sha256-wEKA5mocz7UWbbXBZBZMLhuPYq+u3/0hFFGlMproSik=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pika/default.nix b/pkgs/development/python-modules/pika/default.nix
index ff3b9207182e..ead9239f5cde 100644
--- a/pkgs/development/python-modules/pika/default.nix
+++ b/pkgs/development/python-modules/pika/default.nix
@@ -1,11 +1,19 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+
+# build-system
+, setuptools
+
+# dependencies
 , gevent
-, nose2
-, mock
 , twisted
 , tornado
+
+# tests
+, nose2
+, mock
+
 }:
 
 buildPythonPackage rec {
@@ -20,9 +28,20 @@ buildPythonPackage rec {
     hash = "sha256-60Z+y3YXazUghfnOy4e7HzM18iju5m5OEt4I3Wg6ty4=";
   };
 
-  propagatedBuildInputs = [ gevent tornado twisted ];
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  propagatedBuildInputs = [
+    gevent
+    tornado
+    twisted
+  ];
 
-  nativeCheckInputs = [ nose2 mock ];
+  nativeCheckInputs = [
+    nose2
+    mock
+  ];
 
   postPatch = ''
     # don't stop at first test failure
@@ -45,7 +64,9 @@ buildPythonPackage rec {
   '';
 
   meta = with lib; {
+    changelog = "https://github.com/pika/pika/releases/tag/${version}";
     description = "Pure-Python implementation of the AMQP 0-9-1 protocol";
+    downloadPage = "https://github.com/pika/pika";
     homepage = "https://pika.readthedocs.org";
     license = licenses.bsd3;
     maintainers = with maintainers; [ ];
diff --git a/pkgs/development/python-modules/pillow-heif/default.nix b/pkgs/development/python-modules/pillow-heif/default.nix
index fe243c6a0324..6edc041ed481 100644
--- a/pkgs/development/python-modules/pillow-heif/default.nix
+++ b/pkgs/development/python-modules/pillow-heif/default.nix
@@ -1,18 +1,29 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+
+# build-system
 , cmake
-, pillow
-, pytest
 , nasm
+
+# native dependencies
 , libheif
 , libaom
 , libde265
 , x265
+
+# dependencies
+, pillow
+
+# tests
+, opencv4
+, numpy
+, pympler
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
-  pname = "pillow_heif";
+  pname = "pillow-heif";
   version = "0.13.0";
   format = "setuptools";
 
@@ -23,16 +34,37 @@ buildPythonPackage rec {
     hash = "sha256-GbOW29rGpLMS7AfShuO6UCzcspdHtFS7hyNKori0otI=";
   };
 
-  nativeBuildInputs = [ cmake nasm ];
-  buildInputs = [ libheif libaom libde265 x265 ];
-  propagatedBuildInputs = [ pillow ];
-  nativeCheckInputs = [ pytest ];
+  nativeBuildInputs = [
+    cmake
+    nasm
+  ];
 
   dontUseCmakeConfigure = true;
 
-  pythonImportsCheck = [ "pillow_heif" ];
+  buildInputs = [
+    libaom
+    libde265
+    libheif
+    x265
+  ];
+
+  propagatedBuildInputs = [
+    pillow
+  ];
+
+  pythonImportsCheck = [
+    "pillow_heif"
+  ];
+
+  nativeCheckInputs = [
+    opencv4
+    numpy
+    pympler
+    pytestCheckHook
+  ];
 
   meta = {
+    changelog = "https://github.com/bigcat88/pillow_heif/releases/tag/v${version}";
     description = "Python library for working with HEIF images and plugin for Pillow";
     homepage = "https://github.com/bigcat88/pillow_heif";
     license = with lib.licenses; [ bsd3 lgpl3 ];
diff --git a/pkgs/development/python-modules/pillow/default.nix b/pkgs/development/python-modules/pillow/default.nix
index bf3b1991c39a..ebfcdd8d5574 100644
--- a/pkgs/development/python-modules/pillow/default.nix
+++ b/pkgs/development/python-modules/pillow/default.nix
@@ -3,7 +3,6 @@
 , buildPythonPackage
 , pythonOlder
 , fetchPypi
-, fetchpatch
 , isPyPy
 , defusedxml, olefile, freetype, libjpeg, zlib, libtiff, libwebp, libxcrypt, tcl, lcms2, tk, libX11
 , libxcb, openjpeg, libimagequant, pyroma, numpy, pytestCheckHook, setuptools
@@ -13,7 +12,7 @@
 
 import ./generic.nix (rec {
   pname = "pillow";
-  version = "10.0.0";
+  version = "10.0.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -21,19 +20,9 @@ import ./generic.nix (rec {
   src = fetchPypi {
     pname = "Pillow";
     inherit version;
-    hash = "sha256-nIK1s+BDx68NlXktDSDM9o9hof7Gs1MOcYtohCJyc5Y=";
+    hash = "sha256-1ylnsGvpMA/tXPvItbr87sSL983H2rZrHSVJA1KHGR0=";
   };
 
-  patches = [
-    # Pull in zlib-1.3 fix pending upstream inclusion
-    #   https://github.com/python-pillow/Pillow/pull/7344
-    (fetchpatch {
-      name = "zlib-1.3.patch";
-      url = "https://github.com/python-pillow/Pillow/commit/9ef7cb39def45b0fe1cdf4828ca20838a1fc39d1.patch";
-      hash = "sha256-N7V6Xz+SBHSm3YIgmbty7zbqkv8MzpLMhU4Xxerhx8w=";
-    })
-  ];
-
   passthru.tests = {
     inherit imageio matplotlib pilkit pydicom reportlab;
   };
diff --git a/pkgs/development/python-modules/plaster-pastedeploy/default.nix b/pkgs/development/python-modules/plaster-pastedeploy/default.nix
index ad1fa2d68fd1..9e6263351daa 100644
--- a/pkgs/development/python-modules/plaster-pastedeploy/default.nix
+++ b/pkgs/development/python-modules/plaster-pastedeploy/default.nix
@@ -1,7 +1,6 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
 , plaster
 , pastedeploy
 , pytestCheckHook
@@ -9,22 +8,14 @@
 
 buildPythonPackage rec {
   pname = "plaster-pastedeploy";
-  version = "0.6";
+  version = "1.0.1";
 
   src = fetchPypi {
-    inherit pname version;
-    sha256 = "c231130cb86ae414084008fe1d1797db7e61dc5eaafb5e755de21387c27c6fae";
+    pname = "plaster_pastedeploy";
+    inherit version;
+    hash = "sha256-viYubS5BpyZIddqi/ihQy7BhVyi83JKCj9xyc244FBI=";
   };
 
-  patches = [
-    # Fix tests compatibility with pastedeploy 2+
-    # https://github.com/Pylons/plaster_pastedeploy/pull/17
-    (fetchpatch {
-      url = "https://github.com/Pylons/plaster_pastedeploy/commit/d77d81a57e917c67a20332beca8f418651172905.patch";
-      sha256 = "0n5vnqn8kad41kn9grcwiic6c6rhvy1ji3w81s2v9xyk0bd9yryf";
-    })
-  ];
-
   propagatedBuildInputs = [ plaster pastedeploy ];
 
   nativeCheckInputs = [ pytestCheckHook ];
diff --git a/pkgs/development/python-modules/platformdirs/default.nix b/pkgs/development/python-modules/platformdirs/default.nix
index f64a76d3e625..777ba72bcc2c 100644
--- a/pkgs/development/python-modules/platformdirs/default.nix
+++ b/pkgs/development/python-modules/platformdirs/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "platformdirs";
-  version = "3.9.1";
+  version = "3.10.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-gBiXdnBWp0SlpE6TQPONTXEsQ2XFGCANGdNM/gv7V5s=";
+    hash = "sha256-Ytilbs29oxuwLfoKTXNQxlh8qBF39F2ZRK8imd57A1w=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/plotly/default.nix b/pkgs/development/python-modules/plotly/default.nix
index 201f2fcfc4bd..4698a84cefb1 100644
--- a/pkgs/development/python-modules/plotly/default.nix
+++ b/pkgs/development/python-modules/plotly/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "plotly";
-  version = "5.13.1";
+  version = "5.16.1";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-kO6aH+4N2jDigw4SmFUIHqF70bBqVTpiti3hXK/xohk=";
+    hash = "sha256-KVrCXt6xjIk6u3Hcrc6gdbeP1v3wfO5CF6ThAJZnkls=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/plotnine/default.nix b/pkgs/development/python-modules/plotnine/default.nix
index 717f530ef16d..241dced9f7e5 100644
--- a/pkgs/development/python-modules/plotnine/default.nix
+++ b/pkgs/development/python-modules/plotnine/default.nix
@@ -17,14 +17,14 @@
 
 buildPythonPackage rec {
   pname = "plotnine";
-  version = "0.10.1";
+  version = "0.12.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-2RKgS2ONz4IsUaZ4i4VmQjI0jVFfFR2zpkwAAZZvaEE=";
+    hash = "sha256-o43LNgf8ADweWa4MnVNdrngXZQ0cvC5W5W5bPeiN/pk=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/plyer/default.nix b/pkgs/development/python-modules/plyer/default.nix
index f190dcb6b24e..5b8bc870b838 100644
--- a/pkgs/development/python-modules/plyer/default.nix
+++ b/pkgs/development/python-modules/plyer/default.nix
@@ -2,35 +2,22 @@
 
 buildPythonPackage rec {
   pname = "plyer";
-  version = "2.0.0";
+  version = "2.1.0";
 
   src = fetchFromGitHub {
     owner = "kivy";
     repo = pname;
-    rev = version;
-    sha256 = "15z1wpq6s69s76r6akzgg340bpc21l2r1j8270gp7i1rpnffcjwm";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-7Icb2MVj5Uit86lRHxal6b7y9gIJ3UT2HNqpA9DYWVE=";
   };
 
-  patches = [
-    # fix naming of the DOCUMENTS dir
-    (fetchpatch {
-      url = "https://github.com/rski/plyer/commit/99dabb2d62248fc3ea5705c2720abf71c9fc378b.patch";
-      hash = "sha256-bbnw0TxH4FGTso5dopzquDCjrjZAy+6CJauqi/nfstA=";
-    })
-    # fix handling of the ~/.config/user-dirs.dir file
-    (fetchpatch {
-      url = "https://github.com/rski/plyer/commit/f803697a1fe4fb5e9c729ee6ef1997b8d64f3ccd.patch";
-      hash = "sha256-akuh//P5puz2PwcBRXZQ4KoGk+fxi4jn2H3pTIT5M78=";
-    })
-  ];
-
   postPatch = ''
     rm -r examples
     # remove all the wifi stuff. Depends on a python wifi module that has not been updated since 2016
     find -iname "wifi*" -exec rm {} \;
     substituteInPlace plyer/__init__.py \
       --replace "wifi = Proxy('wifi', facades.Wifi)" "" \
-      --replace "'wifi'" ""
+      --replace "'wifi', " ""
     substituteInPlace plyer/facades/__init__.py \
       --replace "from plyer.facades.wifi import Wifi" ""
   '';
diff --git a/pkgs/development/python-modules/plyfile/default.nix b/pkgs/development/python-modules/plyfile/default.nix
index 130fba959ea3..20495ba0dd01 100644
--- a/pkgs/development/python-modules/plyfile/default.nix
+++ b/pkgs/development/python-modules/plyfile/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "plyfile";
-  version = "0.7.4";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9e9a18d22a3158fcd74df38761d43a7facc6df75126f2ab9f4e9a5d4d2188652";
+    sha256 = "sha256-TOrt8e2Ss6Jrdm/IxWzaG5sjkOwpmxbe3i5f1FCXJho=";
   };
 
   propagatedBuildInputs = [ numpy ];
diff --git a/pkgs/development/python-modules/poetry-core/default.nix b/pkgs/development/python-modules/poetry-core/default.nix
index 1205b860b8da..fc8da7447ffb 100644
--- a/pkgs/development/python-modules/poetry-core/default.nix
+++ b/pkgs/development/python-modules/poetry-core/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "poetry-core";
-  version = "1.6.1";
+  version = "1.7.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -24,47 +24,9 @@ buildPythonPackage rec {
     owner = "python-poetry";
     repo = pname;
     rev = version;
-    hash = "sha256-Gc22Y2T4uO39jiOqEUFeOfnVCbknuDjmzFPZgk2eY74=";
+    hash = "sha256-OfY2zc+5CgOrgbiPVnvMdT4h1S7Aek8S7iThl6azmsk=";
   };
 
-  # revert update of vendored dependencies to unbreak e.g. zeroconf on x86_64-darwin
-  patches = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [
-    (fetchpatch {
-      url = "https://github.com/python-poetry/poetry-core/commit/0bdf29e9631fda9436066a07ca8e69a4aa97a31e.patch";
-      revert = true;
-      hash = "sha256-Uqlv17GUcmVkB6ZFePtrbUonsbkiIXay7LLuT/WcPh8=";
-    })
-    (fetchpatch {
-      url = "https://github.com/python-poetry/poetry-core/commit/48447a18a60c43240bf075fc0c2501f6d68f0211.patch";
-      revert = true;
-      hash = "sha256-23GazppqYmuAmkE/xMtuzng2PbxhYNwgtmsvb6lfvig=";
-    })
-    (fetchpatch {
-      url = "https://github.com/python-poetry/poetry-core/commit/bc97ac6030049a01e5337fcb53493112a9c75a81.patch";
-      revert = true;
-      hash = "sha256-8NAG+Xm/BNL16NONZJRNB3JiRRKvjMsZJH2FWlw+dHk=";
-    })
-    (fetchpatch {
-      url = "https://github.com/python-poetry/poetry-core/commit/835bc91393fbb983de6227d67b076aea1360ea68.patch";
-      revert = true;
-      hash = "sha256-Z5viypprDY9GGeX6luBsIoSI9D0lN9g14U9uMh4DTfA=";
-    })
-    (fetchpatch {
-      url = "https://github.com/python-poetry/poetry-core/commit/80d7dcdc722dee0e09e5f3303b663003d794832c.patch";
-      revert = true;
-      hash = "sha256-CPjkNCmuAiowp/kyKqnEfUQNmXK95RMJOIa24nG6xi8=";
-    })
-    (fetchpatch {
-      url = "https://github.com/python-poetry/poetry-core/commit/43fd7fe62676421b3661c96844b5d7cf49b87c07.patch";
-      excludes = [
-        "vendors/poetry.lock"
-        "vendors/pyproject.toml"
-      ];
-      revert = true;
-      hash = "sha256-mbu16qFH9ymDZ0KIMiYMy7js5OmxY7z5qg6ZfgfgeLs=";
-    })
-  ];
-
   nativeCheckInputs = [
     build
     git
diff --git a/pkgs/development/python-modules/polling/default.nix b/pkgs/development/python-modules/polling/default.nix
new file mode 100644
index 000000000000..22e7e0c3916d
--- /dev/null
+++ b/pkgs/development/python-modules/polling/default.nix
@@ -0,0 +1,42 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, setuptools
+, wheel
+, mock
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "polling";
+  version = "0.3.0";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "justiniso";
+    repo = "polling";
+    rev = "v${version}";
+    hash = "sha256-Qy2QxCWzAjZMJ6yxZiDT/80I2+rLimoG8/SYxq960Tk=";
+  };
+
+  nativeBuildInputs = [
+    setuptools
+    wheel
+  ];
+
+  pythonImportsCheck = [
+    "polling"
+  ];
+
+  nativeCheckInputs = [
+    mock
+    pytestCheckHook
+  ];
+
+  meta = with lib; {
+    description = "Powerful polling utility in Python";
+    homepage = "http://github.com/justiniso/polling";
+    license = licenses.mit;
+    maintainers = with maintainers; [ ];
+  };
+}
diff --git a/pkgs/development/python-modules/pomegranate/default.nix b/pkgs/development/python-modules/pomegranate/default.nix
index 8c94f8bd1a67..57d6dd0b9ab6 100644
--- a/pkgs/development/python-modules/pomegranate/default.nix
+++ b/pkgs/development/python-modules/pomegranate/default.nix
@@ -2,7 +2,6 @@
 , lib
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 , numpy
 , scipy
 , cython
@@ -16,14 +15,15 @@
 
 buildPythonPackage rec {
   pname = "pomegranate";
-  version = "0.14.8";
+  version = "1.0.0";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "jmschrei";
     # no tags for recent versions: https://github.com/jmschrei/pomegranate/issues/974
-    rev = "0652e955c400bc56df5661db3298a06854c7cce8";
-    sha256 = "16g49nl2bgnh6nh7bd21s393zbksdvgp9l13ww2diwhplj6hlly3";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-EnxKlRRfsOIDLAhYOq7bUSbI/NvPoSyYCZ9D5VCXFGQ=";
   };
 
   propagatedBuildInputs = [ numpy scipy cython networkx joblib pyyaml ];
diff --git a/pkgs/development/python-modules/pooch/default.nix b/pkgs/development/python-modules/pooch/default.nix
index 06c4617c0ce9..b8ba613ba350 100644
--- a/pkgs/development/python-modules/pooch/default.nix
+++ b/pkgs/development/python-modules/pooch/default.nix
@@ -2,10 +2,12 @@
 , buildPythonPackage
 , isPy27
 , fetchPypi
+, setuptools
 , setuptools-scm
+, wheel
 , pytestCheckHook
 , packaging
-, appdirs
+, platformdirs
 , requests
 , tqdm
 , paramiko
@@ -14,46 +16,62 @@
 
 buildPythonPackage rec {
   pname = "pooch";
-  version = "1.6.0";
+  version = "1.7.0";
   format = "pyproject";
+
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-V9IOxLEN1pTSsFu2S8axCcboWmwUBXlM6H7Ys0GrP0Q=";
+    hash = "sha256-8XShBBtkR/Du+IYPdtF/YO0vhX3A76OHp/CCKK8F2Zg=";
   };
 
-  nativeBuildInputs = [ setuptools-scm ];
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+    wheel
+  ];
 
-  propagatedBuildInputs = [ packaging appdirs requests ];
+  propagatedBuildInputs = [
+    packaging
+    platformdirs
+    requests
+  ];
+
+  passthru = {
+    optional-dependencies = {
+      progress = [ tqdm ];
+      sftp = [ paramiko ];
+      xxhash = [ xxhash ];
+    };
+  };
+  preCheck = ''
+    export HOME=$TMPDIR
+  '';
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
-  preCheck = "HOME=$TMPDIR";
-  nativeCheckInputs = [ pytestCheckHook ];
   # tries to touch network
   disabledTests = [
+    "check_availability"
+    "decompress"
+    "downloader"
+    "extractprocessor_fails"
+    "integration"
+    "pooch_corrupted"
     "pooch_custom_url"
     "pooch_download"
     "pooch_logging_level"
     "pooch_update"
-    "pooch_corrupted"
-    "check_availability"
-    "downloader"
+    "processor"
+    "test_fetch"
+    "test_load_registry_from_doi"
     "test_retrieve"
     "test_stream_download"
-    "test_fetch"
-    "decompress"
-    "extractprocessor_fails"
-    "processor"
-    "integration"
-  ];
 
-  passthru = {
-    optional-dependencies = {
-      progress = [ tqdm ];
-      sftp = [ paramiko ];
-      xxhash = [ xxhash ];
-    };
-  };
+  ];
 
   meta = with lib; {
     description = "A friend to fetch your data files.";
diff --git a/pkgs/development/python-modules/portend/default.nix b/pkgs/development/python-modules/portend/default.nix
index 4dfd663ac871..73356631615f 100644
--- a/pkgs/development/python-modules/portend/default.nix
+++ b/pkgs/development/python-modules/portend/default.nix
@@ -1,13 +1,17 @@
 { lib, buildPythonPackage, fetchPypi
+, pythonOlder
 , pytestCheckHook, setuptools-scm, tempora  }:
 
 buildPythonPackage rec {
   pname = "portend";
-  version = "3.1.0";
+  version = "3.2.0";
+  format = "pyproject";
+
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "239e3116045ea823f6df87d6168107ad75ccc0590e37242af0cc1e98c5d224e4";
+    sha256 = "sha256-UlCjUsGclZ12fKyHi4Kdk+XcdiWlFDOZoqANxmKP+3I=";
   };
 
   nativeBuildInputs = [ setuptools-scm ];
@@ -16,6 +20,10 @@ buildPythonPackage rec {
 
   nativeCheckInputs = [ pytestCheckHook ];
 
+  pythonImportsCheck = [
+    "portend"
+  ];
+
   # Some of the tests use localhost networking.
   __darwinAllowLocalNetworking = true;
 
diff --git a/pkgs/development/python-modules/portpicker/default.nix b/pkgs/development/python-modules/portpicker/default.nix
index f9b8f7993ffd..2595e20622d9 100644
--- a/pkgs/development/python-modules/portpicker/default.nix
+++ b/pkgs/development/python-modules/portpicker/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "portpicker";
-  version = "1.5.2";
+  version = "1.6.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-xVaDrXJfXACkG8fbAiUiPovgJLH6Vk0DntM5Dk/Uj7M=";
+    hash = "sha256-vVB/1vlvZe4CeB8uZ06dxsmbv6bjw5mS45FiBMnUMfo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pot/default.nix b/pkgs/development/python-modules/pot/default.nix
index 455ee183a26f..a6251b3ea479 100644
--- a/pkgs/development/python-modules/pot/default.nix
+++ b/pkgs/development/python-modules/pot/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "pot";
-  version = "0.8.2";
+  version = "0.9.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -27,7 +27,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "POT";
     inherit version;
-    hash = "sha256-PKmuPI83DPy7RkOgHHPdPJJz5NT/fpr123AVTzTLwgQ=";
+    hash = "sha256-gcJTJ6ABl/8Rwf5SIc8YGtHf/mFWRBUuLhFd3d9eWRs=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/ppft/default.nix b/pkgs/development/python-modules/ppft/default.nix
index 3a868d78d86d..cd801f497a8c 100644
--- a/pkgs/development/python-modules/ppft/default.nix
+++ b/pkgs/development/python-modules/ppft/default.nix
@@ -25,6 +25,7 @@ buildPythonPackage rec {
 
   # darwin seems to hang
   doCheck = !stdenv.isDarwin;
+
   checkPhase = ''
     runHook preCheck
     ${python.interpreter} -m ppft.tests
@@ -38,6 +39,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Distributed and parallel Python";
     homepage = "https://ppft.readthedocs.io/";
+    changelog = "https://github.com/uqfoundation/ppft/releases/tag/ppft-${version}";
     license = licenses.bsd3;
     maintainers = with maintainers; [ ];
   };
diff --git a/pkgs/development/python-modules/preshed/default.nix b/pkgs/development/python-modules/preshed/default.nix
index b253525aacd1..e0d37c51a2b1 100644
--- a/pkgs/development/python-modules/preshed/default.nix
+++ b/pkgs/development/python-modules/preshed/default.nix
@@ -11,14 +11,14 @@
 
 buildPythonPackage rec {
   pname = "preshed";
-  version = "3.0.8";
+  version = "3.0.9";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-bHTHAHiAm/3doXvpZIPEHQbXF5NLB8q3khAR2BdYs1c=";
+    hash = "sha256-chhjxSRP/NJlGtCSiVGix8d7EC9OEaJRrYXTfudiFmA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/prompt-toolkit/default.nix b/pkgs/development/python-modules/prompt-toolkit/default.nix
index bd676fc23c17..2869c042d2d0 100644
--- a/pkgs/development/python-modules/prompt-toolkit/default.nix
+++ b/pkgs/development/python-modules/prompt-toolkit/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "prompt-toolkit";
-  version = "3.0.38";
+  version = "3.0.39";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "prompt_toolkit";
     inherit version;
-    hash = "sha256-I6xdUFOKmjjIveBf7LR9C0A+zQZihXqG+Ib3mFY9W5s=";
+    hash = "sha256-BFBa3mh9wm3EKEsa0ZqDvi8q/oPnqCis4McvOh33Kqw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/proto-plus/default.nix b/pkgs/development/python-modules/proto-plus/default.nix
index d6ef622698a9..d75842e507a2 100644
--- a/pkgs/development/python-modules/proto-plus/default.nix
+++ b/pkgs/development/python-modules/proto-plus/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "proto-plus";
-  version = "1.22.2";
+  version = "1.22.3";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-DozaPVpjTZiVt1xXPJNSwWSGy3XesOB4tf2jTbQkMWU=";
+    hash = "sha256-/c0JcTy9QkgHQNL+KcmQ9/vYhaZ+/DKKqL5u4+n3ams=";
   };
 
   propagatedBuildInputs = [ protobuf ];
diff --git a/pkgs/development/python-modules/psycopg/default.nix b/pkgs/development/python-modules/psycopg/default.nix
index e2d775f0b3b3..38554ad8e97a 100644
--- a/pkgs/development/python-modules/psycopg/default.nix
+++ b/pkgs/development/python-modules/psycopg/default.nix
@@ -35,13 +35,13 @@
 
 let
   pname = "psycopg";
-  version = "3.1.10";
+  version = "3.1.11";
 
   src = fetchFromGitHub {
     owner = "psycopg";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-GdgzHmzPCK3wq/8sCc1NaPEVwl4Q5OBZMp86RXkhE0M=";
+    hash = "sha256-cQTGaiVgdgaq1fmDdtqvc+uCp66S+s0GsTcFTARR+SI=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/psycopg2/default.nix b/pkgs/development/python-modules/psycopg2/default.nix
index b697c66613b3..bfe33e1ec3ad 100644
--- a/pkgs/development/python-modules/psycopg2/default.nix
+++ b/pkgs/development/python-modules/psycopg2/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "psycopg2";
-  version = "2.9.5";
+  version = "2.9.7";
   format = "setuptools";
 
   # Extension modules don't work well with PyPy. Use psycopg2cffi instead.
@@ -21,7 +21,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-pSRtLmg6ly4hh6hxS1ws+BVsBkYp+amxqHPBcw2eJFo=";
+    hash = "sha256-8AzDW9cRnx/tF7hb0QB4VRlN3iy9jeAauOuxdIdECtg=";
   };
 
   outputs = [ "out" "doc" ];
diff --git a/pkgs/development/python-modules/psygnal/default.nix b/pkgs/development/python-modules/psygnal/default.nix
index c4a1565ccc2d..c9a1f710b671 100644
--- a/pkgs/development/python-modules/psygnal/default.nix
+++ b/pkgs/development/python-modules/psygnal/default.nix
@@ -8,13 +8,14 @@
 , pydantic
 , pytestCheckHook
 , pythonOlder
+, toolz
 , typing-extensions
 , wrapt
 }:
 
 buildPythonPackage rec {
   pname = "psygnal";
-  version = "0.9.0";
+  version = "0.9.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -23,7 +24,7 @@ buildPythonPackage rec {
     owner = "pyapp-kit";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-9rYG0XqwFJQojnvM5ygm1RVu9NbeFASns0llOGKaP+4=";
+    hash = "sha256-Ki2s057aqaZa+kOpAlhBYFpZeuDX42+txQXFuBtXd04=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
@@ -42,6 +43,7 @@ buildPythonPackage rec {
     numpy
     pydantic
     pytestCheckHook
+    toolz
     wrapt
   ];
 
diff --git a/pkgs/development/python-modules/py3status/default.nix b/pkgs/development/python-modules/py3status/default.nix
index 9d44aff94394..f0f5484aeb56 100644
--- a/pkgs/development/python-modules/py3status/default.nix
+++ b/pkgs/development/python-modules/py3status/default.nix
@@ -23,11 +23,11 @@
 
 buildPythonPackage rec {
   pname = "py3status";
-  version = "3.51";
+  version = "3.53";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-x4MftAC1TyR4FEvl+ytwCYg2cm5qAG/X/MJUhJRGlkU=";
+    hash = "sha256-vZrzHERjAg9J004A2dAbq8hKmAUslCTaRdwEAe9JRqU=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pyarr/default.nix b/pkgs/development/python-modules/pyarr/default.nix
index 41fa4afc215b..2da0b65e5bed 100644
--- a/pkgs/development/python-modules/pyarr/default.nix
+++ b/pkgs/development/python-modules/pyarr/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "pyarr";
-  version = "4.1.0";
+  version = "5.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-3DX02V3Srpx6hqimWbesxfkDqslVH4+8uXY7XYDmjX0=";
+    hash = "sha256-jlcc9Kj1MYSsnvJkKZXXWWJVDx3KIuojjbGtl8kDUpw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pyatag/default.nix b/pkgs/development/python-modules/pyatag/default.nix
index ff2b4c2dcffc..405c39398d5e 100644
--- a/pkgs/development/python-modules/pyatag/default.nix
+++ b/pkgs/development/python-modules/pyatag/default.nix
@@ -7,7 +7,7 @@
 
 buildPythonPackage rec {
   pname = "pyatag";
-  version = "0.3.6.2";
+  version = "3.5.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -16,7 +16,7 @@ buildPythonPackage rec {
     owner = "MatsNl";
     repo = "pyatag";
     rev = "refs/tags/${version}";
-    hash = "sha256-yJEPDNjEv2lGrBQ78sl7nseVRemsG7hTdBGH5trciYU=";
+    hash = "sha256-hyGos0LFVKv63jf1ODPFfk+R47oyHea+8MGvxeKpop8=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pybids/default.nix b/pkgs/development/python-modules/pybids/default.nix
index 33660d9165e8..f801b878ae75 100644
--- a/pkgs/development/python-modules/pybids/default.nix
+++ b/pkgs/development/python-modules/pybids/default.nix
@@ -18,24 +18,14 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.15.6";
+  version = "0.16.3";
   pname = "pybids";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-OjWW08tyVDHkF0X3Pa+10HYD/7Gysp5DkEt9LaVxsdM=";
+    hash = "sha256-EOJ5NQyNFMpgLA1EaaXkv3/zk+hkPIMaVGrnNba4LMM=";
   };
 
-  patches = [
-    # remove after next release
-    (fetchpatch {
-      name = "fix-pybids-sqlalchemy-dep";
-      url = "https://github.com/bids-standard/pybids/commit/5f008dfc282394ef94a68d47dba37ceead9eac9a.patch";
-      hash = "sha256-gx6w35XqDBZ8cTGHeY/mz2xNQqza9E5z8bRJR7mbPcg=";
-      excludes = [ "pyproject.toml" ];  # not in PyPI dist
-    })
-  ];
-
   nativeBuildInputs = [ pythonRelaxDepsHook ];
 
   pythonRelaxDeps = [ "sqlalchemy" ];
diff --git a/pkgs/development/python-modules/pybigwig/default.nix b/pkgs/development/python-modules/pybigwig/default.nix
index 3101066ff251..efbc350530e5 100644
--- a/pkgs/development/python-modules/pybigwig/default.nix
+++ b/pkgs/development/python-modules/pybigwig/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "pybigwig";
-  version = "0.3.20";
+  version = "0.3.22";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -18,7 +18,7 @@ buildPythonPackage rec {
     owner = "deeptools";
     repo = "pyBigWig";
     rev = "refs/tags/${version}";
-    hash = "sha256-uYKxM0HOG4fus5geBFjbfbv6G1kDvMaAwhk0w/e1YII=";
+    hash = "sha256-wJC5eXIC9PNlbCtmq671WuoIJVkh3aX7K6WArJWjyFg=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/pybotvac/default.nix b/pkgs/development/python-modules/pybotvac/default.nix
index 004572279abb..a104e1e1aeb7 100644
--- a/pkgs/development/python-modules/pybotvac/default.nix
+++ b/pkgs/development/python-modules/pybotvac/default.nix
@@ -19,6 +19,10 @@ buildPythonPackage rec {
     hash = "sha256-SXIs9AUXWm1H49MVDT4z6msNPaW5sAU20rcsWZ7ERdU=";
   };
 
+  patches = [
+    ./urllib3-2.0-compat.patch
+  ];
+
   propagatedBuildInputs = [
     requests
     requests-oauthlib
diff --git a/pkgs/development/python-modules/pybotvac/urllib3-2.0-compat.patch b/pkgs/development/python-modules/pybotvac/urllib3-2.0-compat.patch
new file mode 100644
index 000000000000..8b6ef4e91cc3
--- /dev/null
+++ b/pkgs/development/python-modules/pybotvac/urllib3-2.0-compat.patch
@@ -0,0 +1,21 @@
+diff --git a/pybotvac/robot.py b/pybotvac/robot.py
+index f87546f..e9a61de 100644
+--- a/pybotvac/robot.py
++++ b/pybotvac/robot.py
+@@ -6,7 +6,6 @@ from datetime import datetime, timezone
+ from email.utils import format_datetime

+ 

+ import requests

+-import urllib3

+ from voluptuous import (

+     ALLOW_EXTRA,

+     All,

+@@ -21,8 +20,6 @@ from voluptuous import (
+ from .exceptions import NeatoRobotException, NeatoUnsupportedDevice

+ from .neato import Neato  # For default Vendor argument

+ 

+-# Disable warning due to SubjectAltNameWarning in certificate

+-urllib3.disable_warnings(urllib3.exceptions.SubjectAltNameWarning)

+ 

+ _LOGGER = logging.getLogger(__name__)

+ 

diff --git a/pkgs/development/python-modules/pycairo/default.nix b/pkgs/development/python-modules/pycairo/default.nix
index 84c64b79df06..ff2f2e581906 100644
--- a/pkgs/development/python-modules/pycairo/default.nix
+++ b/pkgs/development/python-modules/pycairo/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "pycairo";
-  version = "1.23.0";
+  version = "1.24.0";
 
   disabled = pythonOlder "3.6";
 
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "pygobject";
     repo = "pycairo";
     rev = "refs/tags/v${version}";
-    hash = "sha256-tkyVTJUdL2pBpBUpWsiDPKnd5OV88w3TdEOMxMc+hPM=";
+    hash = "sha256-eAE0YPZAV90MP6g1V1T80suaRV15ts38kYt6Djb78Xk=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pycddl/default.nix b/pkgs/development/python-modules/pycddl/default.nix
index 389717400670..9cd2d1fab202 100644
--- a/pkgs/development/python-modules/pycddl/default.nix
+++ b/pkgs/development/python-modules/pycddl/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "pycddl";
-  version = "0.4.0";
+  version = "0.5.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-w0CGbPeiXyS74HqZXyiXhvaAMUaIj5onwjl9gWKAjqY=";
+    hash = "sha256-LdecJPSov2Y/QI4MWb20DcF0EtMuDO0VwiQDUeD55GI=";
   };
 
   nativeBuildInputs = with rustPlatform; [ maturinBuildHook cargoSetupHook ];
@@ -37,7 +37,7 @@ buildPythonPackage rec {
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src;
     name = "${pname}-${version}";
-    hash = "sha256-g96eeaqN9taPED4u+UKUcoitf5aTGFrW2/TOHoHEVHs=";
+    hash = "sha256-FJET2Xb1cq4aePFhPXpp2oEPIOtpugYWNFAa2Dj0F6Y=";
   };
 
   nativeCheckInputs = [ pytestCheckHook psutil cbor2 ];
diff --git a/pkgs/development/python-modules/pyclipper/default.nix b/pkgs/development/python-modules/pyclipper/default.nix
index 1b9eba36b96d..45e5ff27ee55 100644
--- a/pkgs/development/python-modules/pyclipper/default.nix
+++ b/pkgs/development/python-modules/pyclipper/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "pyclipper";
-  version = "1.3.0.post4";
+  version = "1.3.0.post5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -18,7 +18,7 @@ buildPythonPackage rec {
     owner = "fonttools";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-FMqOZ0WOorTtbdweeu9UdoUNWOPrcwc+0SK+55XxyQQ=";
+    hash = "sha256-FKpP+tgJFzhij3wDQsAgwrTNnny7lgmN+tlSQ9JgG+Q=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/pycodestyle/default.nix b/pkgs/development/python-modules/pycodestyle/default.nix
index cdbec2770080..250537774c2a 100644
--- a/pkgs/development/python-modules/pycodestyle/default.nix
+++ b/pkgs/development/python-modules/pycodestyle/default.nix
@@ -3,11 +3,12 @@
 , fetchPypi
 , lib
 , python
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "pycodestyle";
-  version = "2.10.0";
+  version = "2.11.0";
 
   disabled = pythonOlder "3.6";
 
@@ -15,26 +16,22 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-NHGHvbR2Mp2Y9pXCE9cpWoRtEVL/T+m6y4qVkLjucFM=";
+    hash = "sha256-JZvMF4V9ios7SiMnMkt55fAgoTwWB0Zw+cjI+HLqdtA=";
   };
 
-  patches = [
-    # https://github.com/PyCQA/pycodestyle/issues/1151
-    # Applies a modified version of an upstream patch that only applied
-    # to Python 3.12.
-    ./python-3.11.4-compat.patch
+  pythonImportsCheck = [
+    "pycodestyle"
   ];
 
-  # https://github.com/PyCQA/pycodestyle/blob/2.10.0/tox.ini#L13
-  checkPhase = ''
+  nativCheckInputs = [
+    pytestCheckHook
+  ];
+
+  # https://github.com/PyCQA/pycodestyle/blob/2.11.0/tox.ini#L16
+  postCheck = ''
     ${python.interpreter} -m pycodestyle --statistics pycodestyle.py
-    ${python.interpreter} -m pycodestyle --max-doc-length=72 --testsuite testsuite
-    ${python.interpreter} -m pycodestyle --max-doc-length=72 --doctest
-    ${python.interpreter} -m unittest discover testsuite -vv
   '';
 
-  pythonImportsCheck = [ "pycodestyle" ];
-
   meta = with lib; {
     changelog = "https://github.com/PyCQA/pycodestyle/blob/${version}/CHANGES.txt";
     description = "Python style guide checker";
diff --git a/pkgs/development/python-modules/pycodestyle/python-3.11.4-compat.patch b/pkgs/development/python-modules/pycodestyle/python-3.11.4-compat.patch
deleted file mode 100644
index d8a0d7953776..000000000000
--- a/pkgs/development/python-modules/pycodestyle/python-3.11.4-compat.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-diff --git a/testsuite/test_api.py b/testsuite/test_api.py
-index 8dde32ff..38e34acf 100644
---- a/testsuite/test_api.py
-+++ b/testsuite/test_api.py
-@@ -329,7 +329,10 @@ def test_check_nullbytes(self):
-         count_errors = pep8style.input_file('stdin', lines=['\x00\n'])
- 
-         stdout = sys.stdout.getvalue()
--        expected = "stdin:1:1: E901 ValueError"
-+        if sys.version_info < (3, 11, 4):
-+            expected = "stdin:1:1: E901 ValueError"
-+        else:
-+            expected = "stdin:1:1: E901 SyntaxError: source code string cannot contain null bytes"  # noqa: E501
-         self.assertTrue(stdout.startswith(expected),
-                         msg='Output %r does not start with %r' %
-                         (stdout, expected))
diff --git a/pkgs/development/python-modules/pycognito/default.nix b/pkgs/development/python-modules/pycognito/default.nix
index 22947f9e1369..a66c0ef49117 100644
--- a/pkgs/development/python-modules/pycognito/default.nix
+++ b/pkgs/development/python-modules/pycognito/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "pycognito";
-  version = "2022.12.0";
+  version = "2023.5.0";
   disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "pvizeli";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-WepDna9f3Z3dBxWdE6G7nbl3yPK5vMG+7X1rxbZwdjE=";
+    hash = "sha256-2Aqid2bd5BAnWQ+Wtji0zXjLAmSpyJNGqJ0VroGi6lY=";
   };
 
   propagatedBuildInputs = [
@@ -47,6 +47,11 @@ buildPythonPackage rec {
 
   pytestFlagsArray = [ "tests.py" ];
 
+  disabledTests = [
+    # requires network access
+    "test_srp_requests_http_auth"
+  ];
+
   pythonImportsCheck = [ "pycognito" ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/pycurl/default.nix b/pkgs/development/python-modules/pycurl/default.nix
index cacb67496c8c..fb4aacf3b83d 100644
--- a/pkgs/development/python-modules/pycurl/default.nix
+++ b/pkgs/development/python-modules/pycurl/default.nix
@@ -3,7 +3,6 @@
 , buildPythonPackage
 , isPyPy
 , fetchPypi
-, fetchpatch
 , pythonOlder
 , curl
 , openssl
@@ -14,24 +13,14 @@
 
 buildPythonPackage rec {
   pname = "pycurl";
-  version = "7.45.1";
+  version = "7.45.2";
   disabled = isPyPy || (pythonOlder "3.5"); # https://github.com/pycurl/pycurl/issues/208
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-qGOtGP9Hj1VFkkBXiHza5CLhsnRuQWdGFfaHSY6luIo=";
+    hash = "sha256-VzBZC+AnE2Slvd2eJFycwPtxDEy6y92VJkoxItIyJMo=";
   };
 
-  patches = [
-    # Pull upstream patch for curl-3.83:
-    #  https://github.com/pycurl/pycurl/pull/753
-    (fetchpatch {
-      name = "curl-3.83.patch";
-      url = "https://github.com/pycurl/pycurl/commit/d47c68b1364f8a1a45ab8c584c291d44b762f7b1.patch";
-      hash = "sha256-/lGq7O7ZyytzBAxWJPigcWdvypM7OHLBcp9ItmX7z1g=";
-    })
-  ];
-
   preConfigure = ''
     substituteInPlace setup.py --replace '--static-libs' '--libs'
     export PYCURL_SSL_LIBRARY=openssl
@@ -75,6 +64,14 @@ buildPythonPackage rec {
     "test_libcurl_ssl_gnutls"
     # AssertionError: assert 'crypto' in ['curl']
     "test_ssl_in_static_libs"
+    # tests that require curl with http3Support
+    "test_http_version_3"
+    # https://github.com/pycurl/pycurl/issues/819
+    "test_multi_socket_select"
+    # https://github.com/pycurl/pycurl/issues/729
+    "test_multi_socket_action"
+    # https://github.com/pycurl/pycurl/issues/822
+    "test_request_with_verifypeer"
   ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [
     # Fatal Python error: Segmentation fault
     "cadata_test"
diff --git a/pkgs/development/python-modules/pydal/default.nix b/pkgs/development/python-modules/pydal/default.nix
index b5de4635b47e..18fd4dc70b4a 100644
--- a/pkgs/development/python-modules/pydal/default.nix
+++ b/pkgs/development/python-modules/pydal/default.nix
@@ -1,38 +1,46 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, python
+, pytestCheckHook
+, pythonOlder
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "pydal";
-  version = "20221110.1";
-  format = "setuptools";
+  version = "20230521.1";
+  format = "pyproject";
+
+  disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-fD6JHHD42JGONidvIQoZWbt7rfOydvRxkZhv/PW2o5A=";
+    hash = "sha256-EEeKYeYnxbjLdpH39+v3IQhFSFMWST0310DCl/ttGEU=";
   };
 
-  postPatch = ''
-    # this test has issues with an import statement
-    # rm tests/tags.py
-    sed -i '/from .tags import/d' tests/__init__.py
-
-    # this assertion errors without obvious reason
-    sed -i '/self.assertEqual(csv0, str(r4))/d' tests/caching.py
-
-    # some sql tests fail against sqlite engine
-    sed -i '/from .sql import/d' tests/__init__.py
-  '';
-
-  pythonImportsCheck = [ "pydal" ];
-
-  checkPhase = ''
-    runHook preCheck
-    ${python.interpreter} -m unittest tests
-    runHook postCheck
-  '';
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
+  pytestFlagsArray = [
+    "tests/*.py"
+    # these tests already seem to be broken on the upstream
+    "--deselect=tests/nosql.py::TestFields::testRun"
+    "--deselect=tests/nosql.py::TestSelect::testGroupByAndDistinct"
+    "--deselect=tests/nosql.py::TestExpressions::testOps"
+    "--deselect=tests/nosql.py::TestExpressions::testRun"
+    "--deselect=tests/nosql.py::TestImportExportUuidFields::testRun"
+    "--deselect=tests/nosql.py::TestConnection::testRun"
+    "--deselect=tests/validation.py::TestValidateAndInsert::testRun"
+    "--deselect=tests/validation.py::TestValidateUpdateInsert::testRun"
+    "--deselect=tests/validators.py::TestValidators::test_IS_IN_DB"
+  ];
+
+  pythonImportsCheck = ["pydal"];
 
   meta = with lib; {
     description = "Python Database Abstraction Layer";
diff --git a/pkgs/development/python-modules/pydantic-core/Cargo.lock b/pkgs/development/python-modules/pydantic-core/Cargo.lock
deleted file mode 100644
index 05a29d770d83..000000000000
--- a/pkgs/development/python-modules/pydantic-core/Cargo.lock
+++ /dev/null
@@ -1,662 +0,0 @@
-# This file is automatically @generated by Cargo.
-# It is not intended for manual editing.
-version = 3
-
-[[package]]
-name = "ahash"
-version = "0.8.3"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2c99f64d1e06488f620f932677e24bc6e2897582980441ae90a671415bd7ec2f"
-dependencies = [
- "cfg-if",
- "getrandom",
- "once_cell",
- "version_check",
-]
-
-[[package]]
-name = "aho-corasick"
-version = "1.0.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "43f6cb1bf222025340178f382c426f13757b2960e89779dfcb319c32542a5a41"
-dependencies = [
- "memchr",
-]
-
-[[package]]
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-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc"
-
-[[package]]
-name = "windows_aarch64_msvc"
-version = "0.48.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3"
-
-[[package]]
-name = "windows_i686_gnu"
-version = "0.48.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241"
-
-[[package]]
-name = "windows_i686_msvc"
-version = "0.48.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00"
-
-[[package]]
-name = "windows_x86_64_gnu"
-version = "0.48.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1"
-
-[[package]]
-name = "windows_x86_64_gnullvm"
-version = "0.48.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953"
-
-[[package]]
-name = "windows_x86_64_msvc"
-version = "0.48.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a"
diff --git a/pkgs/development/python-modules/pydantic-core/default.nix b/pkgs/development/python-modules/pydantic-core/default.nix
index 7826712acb6e..6e273aaef4c9 100644
--- a/pkgs/development/python-modules/pydantic-core/default.nix
+++ b/pkgs/development/python-modules/pydantic-core/default.nix
@@ -14,64 +14,74 @@
 , dirty-equals
 }:
 
-buildPythonPackage rec {
-  pname = "pydantic-core";
-  version = "2.3.0";
-  format = "pyproject";
+let
+  pydantic-core = buildPythonPackage rec {
+    pname = "pydantic-core";
+    version = "2.6.3";
+    format = "pyproject";
 
-  src = fetchFromGitHub {
-    owner = "pydantic";
-    repo = "pydantic-core";
-    rev = "v${version}";
-    hash = "sha256-Wi+b+xiJtVi3KIy6bzT29kyHFSI7mbMNrLa/Iu3cTEY=";
-  };
+    src = fetchFromGitHub {
+      owner = "pydantic";
+      repo = "pydantic-core";
+      rev = "refs/tags/v${version}";
+      hash = "sha256-bEVACTlzELXPoCtEHMR1s87KJn/qnE0lO1O4RmdjmPM=";
+    };
 
-  patches = [
-    ./01-remove-benchmark-flags.patch
-  ];
+    patches = [
+      ./01-remove-benchmark-flags.patch
+    ];
 
-  cargoDeps = rustPlatform.importCargoLock {
-    lockFile = ./Cargo.lock;
-  };
+    cargoDeps = rustPlatform.fetchCargoTarball {
+      inherit src;
+      name = "${pname}-${version}";
+      hash = "sha256-h9SmMLg/W11h/SQz8Te5OoCKdyG6Fctc5ftqbVQFSwU=";
+    };
+
+    nativeBuildInputs = [
+      cargo
+      rustPlatform.cargoSetupHook
+      rustPlatform.maturinBuildHook
+      rustc
+      typing-extensions
+    ];
+
+    buildInputs = lib.optionals stdenv.isDarwin [
+      libiconv
+    ];
+
+    propagatedBuildInputs = [
+      typing-extensions
+    ];
 
-  nativeBuildInputs = [
-    cargo
-    rustPlatform.cargoSetupHook
-    rustPlatform.maturinBuildHook
-    rustc
-    typing-extensions
-  ];
+    pythonImportsCheck = [ "pydantic_core" ];
 
-  buildInputs = lib.optionals stdenv.isDarwin [
-    libiconv
-  ];
+    # escape infinite recursion with pydantic via dirty-equals
+    doCheck = false;
+    passthru.tests.pytest = pydantic-core.overrideAttrs { doCheck = true; };
 
-  propagatedBuildInputs = [
-    typing-extensions
-  ];
+    nativeCheckInputs = [
+      pytestCheckHook
+      hypothesis
+      pytest-timeout
+      dirty-equals
+      pytest-mock
+    ];
 
-  pythonImportsCheck = [ "pydantic_core" ];
+    disabledTests = [
+      # RecursionError: maximum recursion depth exceeded while calling a Python object
+      "test_recursive"
+    ];
 
-  nativeCheckInputs = [
-    pytestCheckHook
-    hypothesis
-    pytest-timeout
-    dirty-equals
-    pytest-mock
-  ];
-  disabledTests = [
-    # RecursionError: maximum recursion depth exceeded while calling a Python object
-    "test_recursive"
-  ];
-  disabledTestPaths = [
-    # no point in benchmarking in nixpkgs build farm
-    "tests/benchmarks"
-  ];
+    disabledTestPaths = [
+      # no point in benchmarking in nixpkgs build farm
+      "tests/benchmarks"
+    ];
 
-  meta = with lib; {
-    description = "Core validation logic for pydantic written in rust";
-    homepage = "https://github.com/pydantic/pydantic-core";
-    license = licenses.mit;
-    maintainers = with maintainers; [ blaggacao ];
+    meta = with lib; {
+      description = "Core validation logic for pydantic written in rust";
+      homepage = "https://github.com/pydantic/pydantic-core";
+      license = licenses.mit;
+      maintainers = with maintainers; [ blaggacao ];
+    };
   };
-}
+in pydantic-core
diff --git a/pkgs/development/python-modules/pydantic-extra-types/default.nix b/pkgs/development/python-modules/pydantic-extra-types/default.nix
new file mode 100644
index 000000000000..539873a1a4be
--- /dev/null
+++ b/pkgs/development/python-modules/pydantic-extra-types/default.nix
@@ -0,0 +1,54 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, hatchling
+, pydantic
+, phonenumbers
+, pycountry
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "pydantic-extra-types";
+  version = "2.1.0";
+  format = "pyproject";
+
+  src = fetchFromGitHub {
+    owner = "pydantic";
+    repo = "pydantic-extra-types";
+    rev = "v${version}";
+    hash = "sha256-QPBOHIssTsWQlEg2WRpLRKrB6zmae43EExnPn5P4oAY=";
+  };
+
+  nativeBuildInputs = [
+    hatchling
+  ];
+
+  propagatedBuildInputs = [
+    pydantic
+  ];
+
+  passthru.optional-dependencies = {
+    all = [
+      phonenumbers
+      pycountry
+    ];
+  };
+
+  pythonImportsCheck = [ "pydantic_extra_types" ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ] ++ passthru.optional-dependencies.all;
+
+  pytestFlagsArray = [
+    "-W" "ignore::DeprecationWarning"
+  ];
+
+  meta = with lib; {
+    description = "Extra Pydantic types";
+    homepage = "https://github.com/pydantic/pydantic-extra-types";
+    license = licenses.mit;
+    maintainers = with maintainers; [ ];
+  };
+}
diff --git a/pkgs/development/python-modules/pydantic-settings/default.nix b/pkgs/development/python-modules/pydantic-settings/default.nix
new file mode 100644
index 000000000000..a375ded35f04
--- /dev/null
+++ b/pkgs/development/python-modules/pydantic-settings/default.nix
@@ -0,0 +1,51 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, hatchling
+, pydantic
+, python-dotenv
+, pytestCheckHook
+, pytest-examples
+, pytest-mock
+}:
+
+buildPythonPackage rec {
+  pname = "pydantic-settings";
+  version = "2.0.3";
+  format = "pyproject";
+
+  src = fetchFromGitHub {
+    owner = "pydantic";
+    repo = "pydantic-settings";
+    rev = "v${version}";
+    hash = "sha256-3V6daCibvVr8RKo2o+vHC++QgIYKAOyRg11ATrCzM5Y=";
+  };
+
+  nativeBuildInputs = [
+    hatchling
+  ];
+
+  propagatedBuildInputs = [
+    pydantic
+    python-dotenv
+  ];
+
+  pythonImportsCheck = [ "pydantic_settings" ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-examples
+    pytest-mock
+  ];
+
+  preCheck = ''
+    export HOME=$TMPDIR
+  '';
+
+  meta = with lib; {
+    description = "Settings management using pydantic";
+    homepage = "https://github.com/pydantic/pydantic-settings";
+    license = licenses.mit;
+    maintainers = with maintainers; [ ];
+  };
+}
diff --git a/pkgs/development/python-modules/pydantic/default.nix b/pkgs/development/python-modules/pydantic/default.nix
index ea4943a06506..4384e51db22b 100644
--- a/pkgs/development/python-modules/pydantic/default.nix
+++ b/pkgs/development/python-modules/pydantic/default.nix
@@ -33,7 +33,7 @@
 
 buildPythonPackage rec {
   pname = "pydantic";
-  version = "1.10.9";
+  version = "1.10.12";
   format = "setuptools";
 
   outputs = [
@@ -48,18 +48,9 @@ buildPythonPackage rec {
     owner = "pydantic";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-POqMxBJUFFS1TnO9h5W7jYwFlukBOng0zbtq4kzmMB4=";
+    hash = "sha256-3XnbPGU90wLCPEryFAOky6Iy73Dvgzzh+GbOKW8hZ4U=";
   };
 
-  patches = [
-    # Fixes racy doctests build failures on really fast machines
-    # FIXME: remove after next release
-    (fetchpatch {
-      url = "https://github.com/pydantic/pydantic/pull/6103/commits/f05014a30340e608155683aaca17d275f93a0380.diff";
-      hash = "sha256-sr47hpl37SSFFbK+/h3hGlF6Pl6L8XPKDU0lZZV7Vzs=";
-    })
-  ];
-
   postPatch = ''
     sed -i '/flake8/ d' Makefile
   '';
diff --git a/pkgs/development/python-modules/pydexcom/default.nix b/pkgs/development/python-modules/pydexcom/default.nix
index 412373f09a29..57031c90f97c 100644
--- a/pkgs/development/python-modules/pydexcom/default.nix
+++ b/pkgs/development/python-modules/pydexcom/default.nix
@@ -1,20 +1,30 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, setuptools
+, setuptools-scm
 , requests
 }:
 
 buildPythonPackage rec {
   pname = "pydexcom";
-  version = "0.2.3";
+  version = "0.3.1";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "gagebenne";
     repo = pname;
-    rev = version;
-    hash = "sha256-ItDGnUUUTwCz4ZJtFVlMYjjoBPn2h8QZgLzgnV2T/Qk=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-VZ8Y8W3oEQ3W8eubMbHLfQAXK8cL6+OTyBFwtEe0cBE=";
   };
 
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+  ];
+
   propagatedBuildInputs = [ requests ];
 
   # tests are interacting with the Dexcom API
diff --git a/pkgs/development/python-modules/pydicom/default.nix b/pkgs/development/python-modules/pydicom/default.nix
index a2100c83c8df..11114257714d 100644
--- a/pkgs/development/python-modules/pydicom/default.nix
+++ b/pkgs/development/python-modules/pydicom/default.nix
@@ -11,13 +11,13 @@
 
 let
   pname = "pydicom";
-  version = "2.4.2";
+  version = "2.4.3";
 
   src = fetchFromGitHub {
     owner = "pydicom";
     repo = "pydicom";
     rev = "refs/tags/v${version}";
-    hash = "sha256-FNZVu2/7kBGeP4iTH53bsApfHzHFxr5bxqbqkI4T95E=";
+    hash = "sha256-PF4iA/FPxPYD8OfgWqKRndwi2vURuzh6tlEwduxs/3E=";
   };
 
   # Pydicom needs pydicom-data to run some tests. If these files aren't downloaded
diff --git a/pkgs/development/python-modules/pyeapi/default.nix b/pkgs/development/python-modules/pyeapi/default.nix
index f7923144bae2..2ca3ff02edd9 100644
--- a/pkgs/development/python-modules/pyeapi/default.nix
+++ b/pkgs/development/python-modules/pyeapi/default.nix
@@ -1,7 +1,6 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, fetchpatch
 , setuptools
 , mock
 , netaddr
@@ -11,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "pyeapi";
-  version = "0.8.4";
+  version = "1.0.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -19,8 +18,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "arista-eosplus";
     repo = pname;
-    rev = "v${version}";
-    sha256 = "13chya6wix5jb82k67gr44bjx35gcdwz80nsvpv0gvzs6shn4d7b";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-GZBoCoAqij54rZezRDF/ihJDQ5T6FFyDSRXGV3//avQ=";
   };
 
   nativeBuildInputs = [
@@ -36,28 +35,6 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
-  patches = [
-    # Fix usage of collection, https://github.com/arista-eosplus/pyeapi/pull/223
-    (fetchpatch {
-      name = "fix-collection-usage.patch";
-      url = "https://github.com/arista-eosplus/pyeapi/commit/81754f57eb095703cc474f527a0915360af76f68.patch";
-      hash = "sha256-ZNBTPRNmXCFVJeRAJxzIHmCOXZiGwU6t4ekSupU3BX8=";
-    })
-    (fetchpatch {
-      name = "fix-collection-usage-2.patch";
-      url = "https://github.com/arista-eosplus/pyeapi/commit/cc9c584e4a3167e3c1624cccb6bc0d9c9bcdbc1c.patch";
-      hash = "sha256-EY0i1Skm1llEQAAzvrb2yelhhLBkqKAFJB5ObAIxAYo=";
-      excludes = [
-        ".github/workflows/ci.yml"
-      ];
-    })
-    (fetchpatch {
-      name = "fix-collection-usage-3.patch";
-      url = "https://github.com/arista-eosplus/pyeapi/commit/dc35ab076687ea71665ae9524480b05a4e893909.patch";
-      hash = "sha256-xPaYULCPTxiQGB9Im/qLet+XebW9wq+TAfrxcgQxcoE=";
-    })
-  ];
-
   pytestFlagsArray = [
     "test/unit"
   ];
diff --git a/pkgs/development/python-modules/pyee/default.nix b/pkgs/development/python-modules/pyee/default.nix
index a009186dd019..0efcb94259fe 100644
--- a/pkgs/development/python-modules/pyee/default.nix
+++ b/pkgs/development/python-modules/pyee/default.nix
@@ -6,25 +6,29 @@
 , pytest-trio
 , pytestCheckHook
 , pythonOlder
+, setuptools
+, setuptools-scm
 , twisted
 , typing-extensions
-, vcversioner
+, wheel
 }:
 
 buildPythonPackage rec {
   pname = "pyee";
-  version = "9.0.4";
-  format = "setuptools";
+  version = "11.0.0";
+  format = "pyproject";
 
-  disabled = pythonOlder "3.6";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-J3DEkoq8ch9GtwXmpysMWUgMSmnJqDygsAu5lPHqSzI=";
+    hash = "sha256-J8aCvOYL2txdPiPqzUEB3zKMAoCISj2cB/Ok4+WV3ic=";
   };
 
-  buildInputs = [
-    vcversioner
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+    wheel
   ];
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pyface/default.nix b/pkgs/development/python-modules/pyface/default.nix
index b976989f6b5b..fd0f1409ca75 100644
--- a/pkgs/development/python-modules/pyface/default.nix
+++ b/pkgs/development/python-modules/pyface/default.nix
@@ -3,22 +3,27 @@
 , buildPythonPackage
 , importlib-metadata
 , importlib-resources
+, setuptools
 , traits
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "pyface";
-  version = "7.4.4";
-  format = "setuptools";
+  version = "8.0.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-0F+qxFOUvVWYWQahIM8AEv58rCxmNJYsBTC2pjUO2yI=";
+    hash = "sha256-fhNhg0e3pkjtIM29T9GlFkj1AQKR815OD/G/cKcgy/g=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
     importlib-metadata
     importlib-resources
diff --git a/pkgs/development/python-modules/pyfakefs/default.nix b/pkgs/development/python-modules/pyfakefs/default.nix
index 416ec7c39bca..912754373f3e 100644
--- a/pkgs/development/python-modules/pyfakefs/default.nix
+++ b/pkgs/development/python-modules/pyfakefs/default.nix
@@ -7,13 +7,13 @@
 }:
 
 buildPythonPackage rec {
-  version = "5.1.0";
+  version = "5.2.4";
   pname = "pyfakefs";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-MWxgJmQNFKa0+95x/ZZ0V20bVxDe2o+r3oqtUdeF28M=";
+    hash = "sha256-PgQPN5IIYIag3CGRsF/nCUOOFoqv4ulPzb7444WSCNg=";
   };
 
   postPatch = ''
@@ -32,6 +32,12 @@ buildPythonPackage rec {
   nativeCheckInputs = [ pytestCheckHook ];
   # https://github.com/jmcgeheeiv/pyfakefs/issues/581 (OSError: [Errno 9] Bad file descriptor)
   disabledTests = [ "test_open_existing_pipe" ];
+
+  disabledTestPaths = [
+    # try to import opentimelineio but nixpkgs doesn't have it as of 2023-09-16
+    "pyfakefs/pytest_tests/segfault_test.py"
+  ];
+
   pythonImportsCheck = [ "pyfakefs" ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/pyflakes/default.nix b/pkgs/development/python-modules/pyflakes/default.nix
index d83c02783729..2dea4630c575 100644
--- a/pkgs/development/python-modules/pyflakes/default.nix
+++ b/pkgs/development/python-modules/pyflakes/default.nix
@@ -2,13 +2,12 @@
 , buildPythonPackage
 , pythonOlder
 , fetchPypi
-, fetchpatch, isPy311
 , pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "pyflakes";
-  version = "3.0.1";
+  version = "3.1.0";
 
   disabled = pythonOlder "3.6";
 
@@ -16,17 +15,9 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-7IsnamtgvYDe/tJa3X5DmIHBnmSFCv2bNGKD1BZf0P0=";
+    hash = "sha256-oKrgNMRE2wBxqgd5crpHaNQMgw2VOf1Fv0zT+PaZLvw=";
   };
 
-  patches = lib.optional isPy311 # could be made unconditional on rebuild
-    (fetchpatch {
-      name = "tests-py311.patch";
-      url = "https://github.com/PyCQA/pyflakes/commit/836631f2f73d45baa4021453d89fc9fd6f52be58.diff";
-      hash = "sha256-xlgql+bN0HsGnTMkwax3ZG/5wrbkUl/kQkjlr3lsgRw=";
-    })
-  ;
-
   nativeCheckInputs = [
     pytestCheckHook
   ];
diff --git a/pkgs/development/python-modules/pygame-gui/default.nix b/pkgs/development/python-modules/pygame-gui/default.nix
index e7539a814505..3c530d199f81 100644
--- a/pkgs/development/python-modules/pygame-gui/default.nix
+++ b/pkgs/development/python-modules/pygame-gui/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "pygame-gui";
-  version = "068";
+  version = "069";
   # nixpkgs-update: no auto update
 
   src = fetchFromGitHub {
     owner = "MyreMylar";
     repo = "pygame_gui";
     rev = "refs/tags/v_${version}";
-    hash = "sha256-BCgSCOnuIqjpROpEtkzkvIXK7dIO0dNYsPmQSwXfmTQ=";
+    hash = "sha256-IXU00Us1odbfS7jLPMYuCPv2l/5TUZdYKES7xHs+EWg=";
   };
 
   propagatedBuildInputs = [ pygame python-i18n ];
diff --git a/pkgs/development/python-modules/pygame/default.nix b/pkgs/development/python-modules/pygame/default.nix
index 140b233e3428..f4ceeb9b978c 100644
--- a/pkgs/development/python-modules/pygame/default.nix
+++ b/pkgs/development/python-modules/pygame/default.nix
@@ -6,7 +6,7 @@
 
 buildPythonPackage rec {
   pname = "pygame";
-  version = "2.2.0";
+  version = "2.5.1";
 
   disabled = pythonOlder "3.6";
 
@@ -15,11 +15,11 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
-    rev = version;
+    rev = "refs/tags/${version}";
     # Unicode file names lead to different checksums on HFS+ vs. other
     # filesystems because of unicode normalisation. The documentation
     # has such files and will be removed.
-    hash = "sha256-SMkY3uN3kAlb/pbm047W0G8MJ7G8mCsfGVSPhzd5aEo=";
+    hash = "sha256-0mVbjfNYTfuo8uyd7NFKlneUZMt78mcitQ5nCgPxmFs=";
     postFetch = "rm -rf $out/docs/reST";
   };
 
diff --git a/pkgs/development/python-modules/pygccxml/default.nix b/pkgs/development/python-modules/pygccxml/default.nix
index f4f842852b0c..10336a27549f 100644
--- a/pkgs/development/python-modules/pygccxml/default.nix
+++ b/pkgs/development/python-modules/pygccxml/default.nix
@@ -4,12 +4,13 @@
 , buildPythonPackage
 , llvmPackages
 , pythonOlder
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "pygccxml";
-  version = "2.3.0";
-  format = "setuptools";
+  version = "2.4.0";
+  pyproject = true;
 
   disabled = pythonOlder "3.7";
 
@@ -17,9 +18,13 @@ buildPythonPackage rec {
     owner = "gccxml";
     repo = "pygccxml";
     rev = "refs/tags/v${version}";
-    hash = "sha256-+cmp41iWbkUSLNFLvEPHocpTQAX2CpD8HMXLIYcy+8k=";
+    hash = "sha256-rw99afv68c92LWmKUErB1y0Cts69UEpI0GCxSMvD+B8=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   buildInputs = [
     castxml
     llvmPackages.libcxxStdenv
diff --git a/pkgs/development/python-modules/pygit2/default.nix b/pkgs/development/python-modules/pygit2/default.nix
index c7e4979d1372..5505b1c3a83f 100644
--- a/pkgs/development/python-modules/pygit2/default.nix
+++ b/pkgs/development/python-modules/pygit2/default.nix
@@ -6,7 +6,7 @@
 , cffi
 , fetchPypi
 , isPyPy
-, libgit2_1_6
+, libgit2
 , pycparser
 , pytestCheckHook
 , pythonOlder
@@ -14,22 +14,22 @@
 
 buildPythonPackage rec {
   pname = "pygit2";
-  version = "1.12.2";
+  version = "1.13.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-VuhdDmbelX1ZnR77JAnTmv7v2PAQCb/aB5a0Kktng1g=";
+    hash = "sha256-bd43Q2+rFCZK09bLxarj/VVeualoCnv91uVkzXe14rg=";
   };
 
   preConfigure = lib.optionalString stdenv.isDarwin ''
-    export DYLD_LIBRARY_PATH="${libgit2_1_6}/lib"
+    export DYLD_LIBRARY_PATH="${libgit2}/lib"
   '';
 
   buildInputs = [
-    libgit2_1_6
+    libgit2
   ];
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pygls/default.nix b/pkgs/development/python-modules/pygls/default.nix
index 7ca6b344c9a2..caf3e014eed6 100644
--- a/pkgs/development/python-modules/pygls/default.nix
+++ b/pkgs/development/python-modules/pygls/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "pygls";
-  version = "1.0.1";
+  version = "1.0.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "openlawlibrary";
     repo = "pygls";
     rev = "refs/tags/v${version}";
-    hash = "sha256-ovm897Vu6HRziGee3NioM1BA65mLe3F5Z2k0E+A35Gs=";
+    hash = "sha256-z673NRlnudFyDjKoM+xCbMRTFwh+tjUf4BaNtjwvKx8=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/pygments/default.nix b/pkgs/development/python-modules/pygments/default.nix
index 8f32d26ebc24..f2b89cbcefd5 100644
--- a/pkgs/development/python-modules/pygments/default.nix
+++ b/pkgs/development/python-modules/pygments/default.nix
@@ -13,13 +13,13 @@
 let pygments = buildPythonPackage
   rec {
     pname = "pygments";
-    version = "2.15.1";
+    version = "2.16.1";
     format = "pyproject";
 
     src = fetchPypi {
       pname = "Pygments";
       inherit version;
-      hash = "sha256-is5NPB3UgYlLIAX1YOrQ+fGe5k/pgzZr4aIeFx0Sd1w=";
+      hash = "sha256-Ha/wSUggxpvIlB5AeqIPV3N07og2TuEKmP2+Cuzpbik=";
     };
 
     nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pygmo/default.nix b/pkgs/development/python-modules/pygmo/default.nix
index 147198087fa5..0ce6a2fd3f99 100644
--- a/pkgs/development/python-modules/pygmo/default.nix
+++ b/pkgs/development/python-modules/pygmo/default.nix
@@ -18,13 +18,13 @@
 
 toPythonModule (stdenv.mkDerivation rec {
   pname = "pygmo";
-  version = "2.19.0";
+  version = "2.19.5";
 
   src = fetchFromGitHub {
     owner = "esa";
     repo = "pygmo2";
     rev = "refs/tags/v${version}";
-    hash = "sha256-gjmZf66AcNaAMqyLerBgRu5RUzV6qrT7DigTNE39AwI=";
+    hash = "sha256-szQyw5kYfrQEeXRQzjQ0hzULuzTfmGod6ZxG9PDRj5M=";
   };
 
   cmakeFlags = [
diff --git a/pkgs/development/python-modules/pygtkspellcheck/default.nix b/pkgs/development/python-modules/pygtkspellcheck/default.nix
index 767eb706bb7f..a467ff074643 100644
--- a/pkgs/development/python-modules/pygtkspellcheck/default.nix
+++ b/pkgs/development/python-modules/pygtkspellcheck/default.nix
@@ -1,19 +1,39 @@
-{ lib, buildPythonPackage, fetchPypi, gobject-introspection, gtk3, pyenchant, pygobject3 }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, gobject-introspection
+, gtk3
+, poetry-core
+, pyenchant
+, pygobject3
+}:
 
 buildPythonPackage rec {
   pname = "pygtkspellcheck";
-  version = "5.0.1";
+  version = "5.0.2";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-hIHf1LBmFhPWN138jaAAOpmx+frbe6XM22+jG+OWcvw=";
+    hash = "sha256-rWV/ghoMWHOAmT8ablwOjJSEhtvPqT/UdoZBXL5Nj0s=";
   };
 
-  nativeBuildInputs = [ gobject-introspection ];
-  propagatedBuildInputs = [ pyenchant pygobject3 gtk3 ];
+  nativeBuildInputs = [
+    gobject-introspection
+    poetry-core
+  ];
+
+  propagatedBuildInputs = [
+    pyenchant
+    pygobject3
+    gtk3
+  ];
 
   doCheck = false; # there are no tests
-  pythonImportsCheck = [ "gtkspellcheck" ];
+
+  pythonImportsCheck = [
+    "gtkspellcheck"
+  ];
 
   meta = with lib; {
     homepage = "https://github.com/koehlma/pygtkspellcheck";
diff --git a/pkgs/development/python-modules/pyhepmc/default.nix b/pkgs/development/python-modules/pyhepmc/default.nix
index 7e59dbf9b112..76197c47c2fd 100644
--- a/pkgs/development/python-modules/pyhepmc/default.nix
+++ b/pkgs/development/python-modules/pyhepmc/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "pyhepmc";
-  version = "2.12.0";
+  version = "2.13.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "scikit-hep";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-po1ad02dpY69RRhaRApskH6tdOaSIsCl5PgpjsAzyKo=";
+    hash = "sha256-M18Bq6WrAINpgPx5+uh8dufPBxIklRHpbBWUYMC8v10=";
     fetchSubmodules = true;
   };
 
diff --git a/pkgs/development/python-modules/pyicu/default.nix b/pkgs/development/python-modules/pyicu/default.nix
index f8100ad3ddbb..901bec161445 100644
--- a/pkgs/development/python-modules/pyicu/default.nix
+++ b/pkgs/development/python-modules/pyicu/default.nix
@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "pyicu";
-  version = "2.10.2";
+  version = "2.11";
   format = "setuptools";
 
   src = fetchPypi {
     pname = "PyICU";
     inherit version;
-    hash = "sha256-DDMJ7qf6toV1B6zmJANRW2D+CWy/tPkNFPVf91xUQcE=";
+    hash = "sha256-OrUxJkz+kTKz0qxdcI2ppGSdJfbmgTcwrIjPBAoIqEQ=";
   };
 
   nativeBuildInputs = [ icu ]; # for icu-config, but should be replaced with pkg-config
diff --git a/pkgs/development/python-modules/pymanopt/default.nix b/pkgs/development/python-modules/pymanopt/default.nix
index 0ade36294d96..d6fbdacf4650 100644
--- a/pkgs/development/python-modules/pymanopt/default.nix
+++ b/pkgs/development/python-modules/pymanopt/default.nix
@@ -11,14 +11,14 @@
 
 buildPythonPackage rec {
   pname = "pymanopt";
-  version = "2.1.1";
+  version = "2.2.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-nbSxqMmYWi71s74bbB9LAlPKEslTqG/j266cLfNHrwg=";
+    hash = "sha256-pDFRYhswcuAHG9pcqvzXIy3Ivhxe5R5Ric7AFRh7MK4=";
   };
 
   propagatedBuildInputs = [ numpy scipy torch ];
diff --git a/pkgs/development/python-modules/pymdown-extensions/default.nix b/pkgs/development/python-modules/pymdown-extensions/default.nix
index 1f4bcb1cce29..f6fea35270e5 100644
--- a/pkgs/development/python-modules/pymdown-extensions/default.nix
+++ b/pkgs/development/python-modules/pymdown-extensions/default.nix
@@ -44,14 +44,14 @@ let
 in
 buildPythonPackage rec {
   pname = "pymdown-extensions";
-  version = "10.1.0";
+  version = "10.3";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "facelessuser";
     repo = "pymdown-extensions";
     rev = "refs/tags/${version}";
-    hash = "sha256-KqDEmWAWXdDpQPsP9Vrced+Ozz9IZiD8rCG57hPR7Xs=";
+    hash = "sha256-R35R2dHfjcVQbEa2319FEMjPGl1Y5/u2KEHeR0wTYEo=";
   };
 
   nativeBuildInputs = [ hatchling ];
diff --git a/pkgs/development/python-modules/pymongo/default.nix b/pkgs/development/python-modules/pymongo/default.nix
index 292e7fceead6..bb6196f775a2 100644
--- a/pkgs/development/python-modules/pymongo/default.nix
+++ b/pkgs/development/python-modules/pymongo/default.nix
@@ -7,14 +7,14 @@
 
 buildPythonPackage rec {
   pname = "pymongo";
-  version = "4.3.3";
+  version = "4.5.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-NOlf+wpov/vDtDfy0fJfyRb+899c3u0JktpfQvrpuAc=";
+    hash = "sha256-aB8lLkOz7wVMqRYWNfgbcw9NjK3Siz8rIAT1py+FOYI=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pymorphy3/default.nix b/pkgs/development/python-modules/pymorphy3/default.nix
index c4642b906544..2ef0e9629bd5 100644
--- a/pkgs/development/python-modules/pymorphy3/default.nix
+++ b/pkgs/development/python-modules/pymorphy3/default.nix
@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "pymorphy3";
-  version = "1.2.0";
+  version = "1.2.1";
 
   src = fetchFromGitHub {
     owner = "no-plagiarism";
     repo = pname;
-    rev = version;
-    hash = "sha256-5MXAYcjZPUrGf5G5e7Yml1SLukrZURA0TCv0GiP56rM=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-JTRG+UtNXnS9GFUrgHNVCktb3HdH98wDFgzDPp6oVcQ=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pymupdf/default.nix b/pkgs/development/python-modules/pymupdf/default.nix
index 0bea5f8c51b5..d7e69706e51f 100644
--- a/pkgs/development/python-modules/pymupdf/default.nix
+++ b/pkgs/development/python-modules/pymupdf/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "pymupdf";
-  version = "1.22.5";
+  version = "1.23.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "PyMuPDF";
     inherit version;
-    hash = "sha256-XsjVEGdSKXUp0NaNRs/EzpmRSqvZm+hD8VmaGELWP+k=";
+    hash = "sha256-AhR4rmx26IWSQdu5cGEskIColX2L1pe7oLRTHcHPT4c=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/pynndescent/default.nix b/pkgs/development/python-modules/pynndescent/default.nix
index b7075b9619d7..0d0171b1b066 100644
--- a/pkgs/development/python-modules/pynndescent/default.nix
+++ b/pkgs/development/python-modules/pynndescent/default.nix
@@ -14,14 +14,14 @@
 
 buildPythonPackage rec {
   pname = "pynndescent";
-  version = "0.5.8";
+  version = "0.5.10";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-p8VSVpv2BKEB/VS7odJ8EjieBllF3uOmd3pRjGOkbys=";
+    hash = "sha256-XV3Gg8A+9V/j3faThZcgyhj4XG5uW7C08UhwJ41SiK0=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/pynput/default.nix b/pkgs/development/python-modules/pynput/default.nix
index 394c6f87b65c..88c46532d997 100644
--- a/pkgs/development/python-modules/pynput/default.nix
+++ b/pkgs/development/python-modules/pynput/default.nix
@@ -1,22 +1,61 @@
-{ lib, stdenv, buildPythonPackage, fetchPypi, sphinx, setuptools-lint, xlib, evdev }:
+{ lib
+, stdenv
+, buildPythonPackage
+, fetchFromGitHub
+
+# build-system
+, setuptools
+, setuptools-lint
+, sphinx
+
+# dependencies
+, xlib
+, evdev
+, darwin
+, six
+
+ # tests
+, unittestCheckHook
+ }:
 
 buildPythonPackage rec {
   pname = "pynput";
   version = "1.7.6";
+  format = "pyproject";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "3a5726546da54116b687785d38b1db56997ce1d28e53e8d22fc656d8b92e533c";
+  src = fetchFromGitHub {
+    owner = "moses-palmer";
+    repo = "pynput";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-gRq4LS9NvPL98N0Jk09Z0GfoHS09o3zM284BEWS+NW4=";
   };
 
-  nativeBuildInputs = [ sphinx ];
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "'sphinx >=1.3.1'" ""
+  '';
 
-  propagatedBuildInputs = [ setuptools-lint xlib ]
-  ++ lib.optionals stdenv.isLinux [
-    evdev
+  nativeBuildInputs = [
+    setuptools
+    setuptools-lint
+    sphinx
   ];
 
-  doCheck = false;
+  propagatedBuildInputs = [
+    six
+  ] ++ lib.optionals stdenv.isLinux [
+    evdev
+    xlib
+  ] ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [
+    ApplicationServices
+    Quartz
+  ]);
+
+  doCheck = false; # requires running X server
+
+  nativeCheckInputs = [
+    unittestCheckHook
+  ];
 
   meta = with lib; {
     broken = stdenv.isDarwin;
diff --git a/pkgs/development/python-modules/pynws/default.nix b/pkgs/development/python-modules/pynws/default.nix
index edc9eb26440e..d2dd95f42451 100644
--- a/pkgs/development/python-modules/pynws/default.nix
+++ b/pkgs/development/python-modules/pynws/default.nix
@@ -19,7 +19,7 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "MatthewFlamm";
     repo = pname;
-    rev = "v${version}";
+    rev = "refs/tags/v${version}";
     hash = "sha256-x56kfnmdVV0Fc7XSI60rrtEl4k3uzpIdZxTofUbkUHU=";
   };
 
diff --git a/pkgs/development/python-modules/pyocd/default.nix b/pkgs/development/python-modules/pyocd/default.nix
index 699b6c3cf553..ecc92bc3bd38 100644
--- a/pkgs/development/python-modules/pyocd/default.nix
+++ b/pkgs/development/python-modules/pyocd/default.nix
@@ -21,11 +21,11 @@
 
 buildPythonPackage rec {
   pname = "pyocd";
-  version = "0.34.3";
+  version = "0.35.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2zDr6fnA2MCTT/hNVvk7u3gugMo+nUF2E2VsOPhJXH4=";
+    sha256 = "sha256-AugIT007JtTXx0cLtHD9TtxsK/K6eB492U2k+EVxyXU=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/pyodbc/default.nix b/pkgs/development/python-modules/pyodbc/default.nix
index d3e7faf03cd3..d8cf1f260da2 100644
--- a/pkgs/development/python-modules/pyodbc/default.nix
+++ b/pkgs/development/python-modules/pyodbc/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "pyodbc";
-  version = "4.0.35";
+  version = "4.0.39";
   format = "setuptools";
 
   disabled = pythonOlder "3.7" || isPyPy; # use pypypdbc instead
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-krmvSOi5KEVbyLlL89oFdR+uwJMqEe7iN8GJxtQ55cg=";
+    hash = "sha256-5Si7cN1tYpnuQphokl3whm4+kZx3K57/ecjheSDY8RY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pyparted/default.nix b/pkgs/development/python-modules/pyparted/default.nix
index b8c0812cfbaa..4d473ae094d8 100644
--- a/pkgs/development/python-modules/pyparted/default.nix
+++ b/pkgs/development/python-modules/pyparted/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "pyparted";
-  version = "3.12.0";
+  version = "3.13.0";
   disabled = isPyPy;
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "dcantrell";
-    rev = "v${version}";
-    hash = "sha256-LfBLR0A/wnfBtXISAAY6Nl4vnk1rtY03F+PT8UIMrEs=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-AiUCCrEbDD0OxrvXs1YN3/1IE7SuVasC2YCirIG58iU=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/pypdf/default.nix b/pkgs/development/python-modules/pypdf/default.nix
index 585d12e8fb04..df58a17aee20 100644
--- a/pkgs/development/python-modules/pypdf/default.nix
+++ b/pkgs/development/python-modules/pypdf/default.nix
@@ -25,7 +25,7 @@
 
 buildPythonPackage rec {
   pname = "pypdf";
-  version = "3.15.1";
+  version = "3.16.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
@@ -34,7 +34,7 @@ buildPythonPackage rec {
     rev = "refs/tags/${version}";
     # fetch sample files used in tests
     fetchSubmodules = true;
-    hash = "sha256-0KMZnMIeTkra2Il4HGDBtm8HLP8zpMXgUD4V5U5fYy0=";
+    hash = "sha256-vE5ujknMpufBuwWqtjkLegTRe4eDAvBVPCVM6It2pHQ=";
   };
 
   outputs = [
diff --git a/pkgs/development/python-modules/pyperf/default.nix b/pkgs/development/python-modules/pyperf/default.nix
index e6ae36f0cf8a..fc87620c6b9c 100644
--- a/pkgs/development/python-modules/pyperf/default.nix
+++ b/pkgs/development/python-modules/pyperf/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "pyperf";
-  version = "2.5.0";
+  version = "2.6.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-n9m+W1ciTmi1pbiPcSbxW2yGZ1c/YqCjn68U1v3ROQk=";
+    hash = "sha256-Fxrqabjv3mEhDlEhZth2Tndlqcdni3aAUhdLAfNJ8kc=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/pyproject-api/default.nix b/pkgs/development/python-modules/pyproject-api/default.nix
index 6cbef5b8a77f..4ba62fc1e310 100644
--- a/pkgs/development/python-modules/pyproject-api/default.nix
+++ b/pkgs/development/python-modules/pyproject-api/default.nix
@@ -27,7 +27,7 @@
 
 buildPythonPackage rec {
   pname = "pyproject-api";
-  version = "1.5.4";
+  version = "1.6.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -36,7 +36,7 @@ buildPythonPackage rec {
     owner = "tox-dev";
     repo = "pyproject-api";
     rev = "refs/tags/${version}";
-    hash = "sha256-HX+5BypfEOfQ3vg3vha0QCVrEarjMu/Q8id+xgmWGfA=";
+    hash = "sha256-XQD+36NP2zKUp/QRlgKhwzfMYBh6GVlCYXURXs2qeO8=";
   };
 
   outputs = [
diff --git a/pkgs/development/python-modules/pyqtgraph/default.nix b/pkgs/development/python-modules/pyqtgraph/default.nix
index 2b7b4a1377a7..9e8a876213e8 100644
--- a/pkgs/development/python-modules/pyqtgraph/default.nix
+++ b/pkgs/development/python-modules/pyqtgraph/default.nix
@@ -10,7 +10,7 @@
 , pytestCheckHook
 , freefont_ttf
 , makeFontsConf
-, fetchpatch
+, setuptools
 }:
 
 let
@@ -20,21 +20,18 @@ let
 in
 buildPythonPackage rec {
   pname = "pyqtgraph";
-  version = "0.12.2";
+  version = "0.13.3";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "pyqtgraph";
     repo = "pyqtgraph";
-    rev = "pyqtgraph-${version}";
-    sha256 = "093kkxwj75nb508vz7px4x7lxrwpaff10pl15m4h74hjwyvbsg3d";
+    rev = "refs/tags/pyqtgraph-${version}";
+    hash = "sha256-kFTNhv8pgIRSJX0ePmp1I0+MGfCaW8b86baIYZ2bZQM=";
   };
 
-  # TODO: remove when updating to 0.12.3
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/pyqtgraph/pyqtgraph/commit/2de5cd78da92b48e48255be2f41ae332cf8bb675.patch";
-      sha256 = "1hy86psqyl6ipvbg23zvackkd6f7ajs6qll0mbs0x2zmrj92hk00";
-    })
+  nativeBuildInputs = [
+    setuptools
   ];
 
   propagatedBuildInputs = [
@@ -53,6 +50,11 @@ buildPythonPackage rec {
     export FONTCONFIG_FILE=${fontsConf}
   '';
 
+  pytestFlagsArray = [
+    # we only want to run unittests
+    "tests"
+  ];
+
   disabledTests = lib.optionals (!stdenv.hostPlatform.isx86) [
     # small precision-related differences on other architectures,
     # upstream doesn't consider it serious.
diff --git a/pkgs/development/python-modules/pyramid-multiauth/default.nix b/pkgs/development/python-modules/pyramid-multiauth/default.nix
index f0feafaa5961..c70e7f0b0b64 100644
--- a/pkgs/development/python-modules/pyramid-multiauth/default.nix
+++ b/pkgs/development/python-modules/pyramid-multiauth/default.nix
@@ -1,22 +1,37 @@
 { lib
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
 , pyramid
+, unittestCheckHook
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "pyramid-multiauth";
   version = "1.0.1";
+  pyproject = true;
 
-  src = fetchPypi {
-    pname = "pyramid-multiauth";
-    inherit version;
-    sha256 = "6d8785558e1d0bbe0d0da43e296efc0fbe0de5071d1f9b1091e891f0e4ec9682";
+  src = fetchFromGitHub {
+    owner = "mozilla-services";
+    repo = "pyramid_multiauth";
+    rev = "refs/tags/${version}";
+    hash = "sha256-+Aa+Vc4qCqDe/W5m/RBpYAyOMJkBv+ZGSqElJlkHqs4=";
   };
 
-  propagatedBuildInputs = [ pyramid ];
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  propagatedBuildInputs = [
+    pyramid
+  ];
+
+  nativeCheckInputs = [
+    unittestCheckHook
+  ];
 
   meta = with lib; {
+    changelog = "https://github.com/mozilla-services/pyramid_multiauth/releases/tag/${version}";
     description = "Authentication policy for Pyramid that proxies to a stack of other authentication policies";
     homepage = "https://github.com/mozilla-services/pyramid_multiauth";
     license = licenses.mpl20;
diff --git a/pkgs/development/python-modules/pyreadstat/default.nix b/pkgs/development/python-modules/pyreadstat/default.nix
index 808b0e5428e9..1f616e00acbe 100644
--- a/pkgs/development/python-modules/pyreadstat/default.nix
+++ b/pkgs/development/python-modules/pyreadstat/default.nix
@@ -1,7 +1,7 @@
 { lib
 , stdenv
 , buildPythonPackage
-, cython
+, cython_3
 , fetchFromGitHub
 , libiconv
 , pandas
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "pyreadstat";
-  version = "1.2.2";
+  version = "1.2.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,11 +22,11 @@ buildPythonPackage rec {
     owner = "Roche";
     repo = "pyreadstat";
     rev = "refs/tags/v${version}";
-    hash = "sha256-CvovylOTTyXm0ucTwNSFZzkcA0H8H76BSg4vjB2Pe4M=";
+    hash = "sha256-Rd2nHsEYfr1I5gu2+iXIdHKvF/QgMD+vK6SIK/ytrmo=";
   };
 
   nativeBuildInputs = [
-    cython
+    cython_3
   ];
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/pyrevolve/default.nix b/pkgs/development/python-modules/pyrevolve/default.nix
index 754baf91ad38..d60b2164051c 100644
--- a/pkgs/development/python-modules/pyrevolve/default.nix
+++ b/pkgs/development/python-modules/pyrevolve/default.nix
@@ -2,17 +2,18 @@
 , buildPythonPackage
 , fetchFromGitHub
 , contexttimer
+, setuptools
 , versioneer
 , cython
 , numpy
-, pytest
+, pytestCheckHook
 , pythonOlder
 }:
 
 buildPythonPackage rec {
   pname = "pyrevolve";
-  version = "2.2.2";
-  format = "setuptools";
+  version = "2.2.3";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
@@ -20,12 +21,18 @@ buildPythonPackage rec {
     owner = "devitocodes";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-JLDn3WEBcdO8YYzt/MWOHB/1kcmbmZUsiH00/4Uwlxo=";
+    hash = "sha256-z1G8DXG06Capd87x02zqrtYyBrX4xmJP94t4bgaR2PE=";
   };
 
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace ', "flake8"' ""
+  '';
+
   nativeBuildInputs = [
-    versioneer
     cython
+    setuptools
+    versioneer
   ];
 
   propagatedBuildInputs = [
@@ -33,12 +40,12 @@ buildPythonPackage rec {
     numpy
   ];
 
-  nativeCheckInputs = [ pytest ];
-  # Using approach bellow bcs the tests fail with the pytestCheckHook, throwing the following error
-  # ImportError: cannot import name 'crevolve' from partially initialized module 'pyrevolve'
-  # (most likely due to a circular import)
-  checkPhase = ''
-    pytest
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
+  preCheck = ''
+    rm -rf pyrevolve
   '';
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/pyscard/default.nix b/pkgs/development/python-modules/pyscard/default.nix
index 106fa03a082b..cfa2f64c38b3 100644
--- a/pkgs/development/python-modules/pyscard/default.nix
+++ b/pkgs/development/python-modules/pyscard/default.nix
@@ -1,4 +1,11 @@
-{ lib, stdenv, fetchpatch, fetchPypi, buildPythonPackage, swig, pcsclite, PCSC }:
+{ lib
+, stdenv
+, fetchPypi
+, buildPythonPackage
+, swig
+, pcsclite
+, PCSC
+}:
 
 let
   # Package does not support configuring the pcsc library.
@@ -6,23 +13,14 @@ let
 in
 
 buildPythonPackage rec {
-  version = "2.0.2";
+  version = "2.0.7";
   pname = "pyscard";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "05de0579c42b4eb433903aa2fb327d4821ebac262434b6584da18ed72053fd9e";
+    hash = "sha256-J4BUUl+nX76LEEYNh+3NA6cK2U1oixE0Xkc5mH+Fwb8=";
   };
 
-  patches = [
-    # present in master - remove after 2.0.2
-    (fetchpatch {
-      name = "darwin-typo-test-fix.patch";
-      url = "https://github.com/LudovicRousseau/pyscard/commit/ce842fcc76fd61b8b6948d0b07306d82ad1ec12a.patch";
-      sha256 = "0wsaj87wp9d2vnfzwncfxp2w95m0zhr7zpkmg5jccn06z52ihis3";
-    })
-  ];
-
   postPatch = if withApplePCSC then ''
     substituteInPlace smartcard/scard/winscarddll.c \
       --replace "/System/Library/Frameworks/PCSC.framework/PCSC" \
diff --git a/pkgs/development/python-modules/pysnooz/default.nix b/pkgs/development/python-modules/pysnooz/default.nix
index dd8d6ea4fcde..4ff2513685f6 100644
--- a/pkgs/development/python-modules/pysnooz/default.nix
+++ b/pkgs/development/python-modules/pysnooz/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "pysnooz";
-  version = "0.8.6";
+  version = "0.10.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.9";
@@ -26,7 +26,7 @@ buildPythonPackage rec {
     owner = "AustinBrunkhorst";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-hJwIObiuFEAVhgZXYB9VCeAlewBBnk0oMkP83MUCpyU=";
+    hash = "sha256-jOXmaJprU35sdNRrBBx/YUyiDyyaE1qodWksXkTSEe0=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/pyspnego/default.nix b/pkgs/development/python-modules/pyspnego/default.nix
index c553b6242b2a..910796165340 100644
--- a/pkgs/development/python-modules/pyspnego/default.nix
+++ b/pkgs/development/python-modules/pyspnego/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "pyspnego";
-  version = "0.8.0";
+  version = "0.9.2";
 
   disabled = pythonOlder "3.7";
 
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "jborean93";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-3nFxUu2P8dGt80HRGYOliGHXLrtc83C96kJW27CgXV0=";
+    hash = "sha256-A0vVpEI8TKelZ96dIqSc01SX1gU3pDUVSOV6jap2WtU=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pysptk/default.nix b/pkgs/development/python-modules/pysptk/default.nix
index 4051dc789d3c..e1d3a631549d 100644
--- a/pkgs/development/python-modules/pysptk/default.nix
+++ b/pkgs/development/python-modules/pysptk/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "pysptk";
-  version = "0.2.0";
+  version = "0.2.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-nZchBqagUn26vGmUc3+5S57mnQQ2/4vqOz00DUUF1+U=";
+    hash = "sha256-dFqNWJRDDTlvveZVv3WWUi+KJ8sey4N0qRuBcqmkWIM=";
   };
 
   PYSPTK_BUILD_VERSION = 0;
diff --git a/pkgs/development/python-modules/pystemd/default.nix b/pkgs/development/python-modules/pystemd/default.nix
index ed282f06b2a1..dcaeb3355bfa 100644
--- a/pkgs/development/python-modules/pystemd/default.nix
+++ b/pkgs/development/python-modules/pystemd/default.nix
@@ -10,10 +10,10 @@
 
 buildPythonPackage rec {
   pname = "pystemd";
-  version = "0.10.0";
+  version = "0.13.2";
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-10qBS/2gEIXbGorZC+PLJ9ryOlGrawPn4p7IEfoq6Fk=";
+    hash = "sha256-Tc+ksTpVaFxJ09F8EGMeyhjDN3D2Yxb47yM3uJUcwUQ=";
   };
 
   disabled = python.pythonOlder "3.4";
diff --git a/pkgs/development/python-modules/pystray/default.nix b/pkgs/development/python-modules/pystray/default.nix
index cf6a79853cbc..a6d073dbd669 100644
--- a/pkgs/development/python-modules/pystray/default.nix
+++ b/pkgs/development/python-modules/pystray/default.nix
@@ -5,15 +5,17 @@
 , xlib
 , six
 , xvfb-run
-, sphinx
+, setuptools
 , gobject-introspection
 , pygobject3
 , gtk3
-, libayatana-appindicator }:
+, libayatana-appindicator
+}:
 
 buildPythonPackage rec {
   pname = "pystray";
   version = "0.19.2";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "moses-palmer";
@@ -22,9 +24,28 @@ buildPythonPackage rec {
     hash = "sha256-8B178MSe4ujlnGBmQhIu+BoAh1doP9V5cL0ermLQTvs=";
   };
 
-  nativeBuildInputs = [ gobject-introspection sphinx ];
-  propagatedBuildInputs = [ pillow xlib six pygobject3 gtk3 libayatana-appindicator ];
-  nativeCheckInputs = [ xvfb-run ];
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "'sphinx >=1.3.1'" ""
+  '';
+
+  nativeBuildInputs = [
+    gobject-introspection
+    setuptools
+  ];
+
+  propagatedBuildInputs = [
+    pillow
+    xlib
+    six
+    pygobject3
+    gtk3
+    libayatana-appindicator
+  ];
+
+  nativeCheckInputs = [
+    xvfb-run
+  ];
 
   checkPhase = ''
     rm tests/icon_tests.py # test needs user input
diff --git a/pkgs/development/python-modules/pytablewriter/default.nix b/pkgs/development/python-modules/pytablewriter/default.nix
index cea21215f216..8b37c75e9c24 100644
--- a/pkgs/development/python-modules/pytablewriter/default.nix
+++ b/pkgs/development/python-modules/pytablewriter/default.nix
@@ -117,6 +117,7 @@ buildPythonPackage rec {
   disabledTestPaths = [
     "test/writer/binary/test_excel_writer.py"
     "test/writer/binary/test_sqlite_writer.py"
+    "test/writer/test_elasticsearch_writer.py"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/pytest-aiohttp/default.nix b/pkgs/development/python-modules/pytest-aiohttp/default.nix
index 4a70b0d98057..9cd6ec0491a9 100644
--- a/pkgs/development/python-modules/pytest-aiohttp/default.nix
+++ b/pkgs/development/python-modules/pytest-aiohttp/default.nix
@@ -1,7 +1,9 @@
 { lib
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
+, setuptools
 , setuptools-scm
+, wheel
 , aiohttp
 , pytest
 , pytest-asyncio
@@ -10,22 +12,26 @@
 
 buildPythonPackage rec {
   pname = "pytest-aiohttp";
-  version = "1.0.4";
+  version = "1.0.5";
 
-  format = "setuptools";
+  format = "pyproject";
 
   __darwinAllowLocalNetworking = true;
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "39ff3a0d15484c01d1436cbedad575c6eafbf0f57cdf76fb94994c97b5b8c5a4";
+  src = fetchFromGitHub {
+    owner = "aio-libs";
+    repo = "pytest-aiohttp";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-UACf0frMTOAgSsXQ0oqROHKR1zn4OfLPhd9MwBK002Y=";
   };
 
   nativeBuildInputs = [
+    setuptools
     setuptools-scm
+    wheel
   ];
 
-  SETUPTOOLS_SCM_PRETEND_VERSION = version;
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
 
   buildInputs = [
     pytest
@@ -40,15 +46,9 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
-  disabledTestPaths = [
-    # pytest 7.2.0 incompatibilities
-    # https://github.com/aio-libs/pytest-aiohttp/issues/50
-    "tests/test_fixtures.py"
-  ];
-
   meta = with lib; {
     homepage = "https://github.com/aio-libs/pytest-aiohttp/";
-    changelog = "https://github.com/aio-libs/pytest-aiohttp/blob/v${version}/CHANGES.rst";
+    changelog = "https://github.com/aio-libs/pytest-aiohttp/blob/${src.rev}/CHANGES.rst";
     description = "Pytest plugin for aiohttp support";
     license = licenses.asl20;
     maintainers = with maintainers; [ dotlambda ];
diff --git a/pkgs/development/python-modules/pytest-ansible/default.nix b/pkgs/development/python-modules/pytest-ansible/default.nix
index 0b941d9be607..4fbfb942edda 100644
--- a/pkgs/development/python-modules/pytest-ansible/default.nix
+++ b/pkgs/development/python-modules/pytest-ansible/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "pytest-ansible";
-  version = "3.2.1";
+  version = "4.1.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.9";
@@ -24,7 +24,7 @@ buildPythonPackage rec {
     owner = "ansible";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-fSerRbd7QeEdTfyy2lVLq7FKHWWT0MlutonunHhM5M4=";
+    hash = "sha256-TV/dR4eTiwjrgamwRCig10acaf3MpAzLu0fHF0V2pzw=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/pytest-base-url/default.nix b/pkgs/development/python-modules/pytest-base-url/default.nix
index 4110a0191f3c..a6aa15890b85 100644
--- a/pkgs/development/python-modules/pytest-base-url/default.nix
+++ b/pkgs/development/python-modules/pytest-base-url/default.nix
@@ -46,6 +46,11 @@ buildPythonPackage rec {
     "tests"
   ];
 
+  disabledTests = [
+    # should be xfail? or mocking doesn't work
+    "test_url_fails"
+  ];
+
   pythonImportsCheck = [
     "pytest_base_url"
   ];
diff --git a/pkgs/development/python-modules/pytest-benchmark/default.nix b/pkgs/development/python-modules/pytest-benchmark/default.nix
index 135b0c2295e3..f9011b6d721b 100644
--- a/pkgs/development/python-modules/pytest-benchmark/default.nix
+++ b/pkgs/development/python-modules/pytest-benchmark/default.nix
@@ -2,6 +2,7 @@
 , aspectlib
 , buildPythonPackage
 , elasticsearch
+, elastic-transport
 , fetchFromGitHub
 , fetchpatch
 , freezegun
@@ -11,6 +12,7 @@
 , pygal
 , pytest
 , pytestCheckHook
+, pytest-xdist
 , pythonOlder
 , isPy311
 }:
@@ -45,19 +47,24 @@ buildPythonPackage rec {
     py-cpuinfo
   ];
 
+  passthru.optional-dependencies = {
+    aspect = [ aspectlib ];
+    histogram = [ pygal ];
+    elasticsearch = [ elasticsearch ];
+  };
+
   pythonImportsCheck = [
     "pytest_benchmark"
   ];
 
   nativeCheckInputs = [
-    aspectlib
-    elasticsearch
+    elastic-transport
     freezegun
     git
     mercurial
-    pygal
     pytestCheckHook
-  ];
+    pytest-xdist
+  ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
 
   preCheck = ''
     export PATH="$out/bin:$PATH"
diff --git a/pkgs/development/python-modules/pytest-check/default.nix b/pkgs/development/python-modules/pytest-check/default.nix
index 1f11f31e2139..d8a188af25de 100644
--- a/pkgs/development/python-modules/pytest-check/default.nix
+++ b/pkgs/development/python-modules/pytest-check/default.nix
@@ -8,12 +8,13 @@
 
 buildPythonPackage rec {
   pname = "pytest-check";
-  version = "2.1.4";
+  version = "2.2.1";
   format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-AbN/1wPaD6ZntwF68fBGDHRKhfHuh2de4+D5Ssw98XI=";
+    pname = "pytest_check";
+    inherit version;
+    hash = "sha256-3rN/iB36DV4kbymWI4rvdFp5ANezUjp0FgV3K4osSVI=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pytest-console-scripts/default.nix b/pkgs/development/python-modules/pytest-console-scripts/default.nix
index 1cf1db5fe1a8..5170a7a902ac 100644
--- a/pkgs/development/python-modules/pytest-console-scripts/default.nix
+++ b/pkgs/development/python-modules/pytest-console-scripts/default.nix
@@ -11,14 +11,14 @@
 
 buildPythonPackage rec {
   pname = "pytest-console-scripts";
-  version = "1.3.1";
+  version = "1.4.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-XGw9qunPn77Q5lUHISiThgAZPcACpc8bGHJIZEugKFc=";
+    hash = "sha256-WoJu2EzAr6IC655EOB19di973ajgwj+feafx9Ez0qJU=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/pytest-doctestplus/default.nix b/pkgs/development/python-modules/pytest-doctestplus/default.nix
index b3f445cad431..d4f5a3c5c5ab 100644
--- a/pkgs/development/python-modules/pytest-doctestplus/default.nix
+++ b/pkgs/development/python-modules/pytest-doctestplus/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, numpy
 , packaging
 , pytest
 , pytestCheckHook
@@ -11,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "pytest-doctestplus";
-  version = "0.12.1";
+  version = "1.0.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-epeeS+mdkRbgesBmxfANRfOHZ319d5877zDG/6jHkYE=";
+    hash = "sha256-9lBEDcrt4T7W19pzv7SsWF1AqAREujVC0+buzbJ11J8=";
   };
 
   nativeBuildInputs = [
@@ -35,6 +36,7 @@ buildPythonPackage rec {
   ];
 
   nativeCheckInputs = [
+    numpy
     pytestCheckHook
   ];
 
diff --git a/pkgs/development/python-modules/pytest-env/default.nix b/pkgs/development/python-modules/pytest-env/default.nix
index 1d03413290a7..92ed531c6fbf 100644
--- a/pkgs/development/python-modules/pytest-env/default.nix
+++ b/pkgs/development/python-modules/pytest-env/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "pytest-env";
-  version = "0.8.2";
+  version = "1.0.1";
   format = "pyproject";
 
   src = fetchPypi {
     pname = "pytest_env";
     inherit version;
-    hash = "sha256-uu2bO2uud711uSOODtHuaQOkKAaunWrv+4dUzVWE1P8=";
+    hash = "sha256-YD/iFujgOl0TSYnLQTF8Waq+8BPSJQxxuGSrB5j75vY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pytest-html/default.nix b/pkgs/development/python-modules/pytest-html/default.nix
index f5b20cb1b508..3375a7a0a0bd 100644
--- a/pkgs/development/python-modules/pytest-html/default.nix
+++ b/pkgs/development/python-modules/pytest-html/default.nix
@@ -1,19 +1,65 @@
-{ lib, buildPythonPackage, fetchPypi, pythonOlder
-, pytest, pytest-metadata, setuptools-scm }:
-
-buildPythonPackage rec {
+{ lib
+, buildNpmPackage
+, buildPythonPackage
+, fetchPypi
+, pythonOlder
+, hatch-vcs
+, hatchling
+, jinja2
+, pytest
+, pytest-metadata
+}:
+let
   pname = "pytest-html";
-  version = "3.2.0";
-  disabled = pythonOlder "3.6";
+  version = "4.0.2";
 
   src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-xOL0uwv/xDf1GtIXSoo+cd+Bu8L2iUYE5gSvGPvmh8M=";
+    pname = "pytest_html";
+    inherit version;
+    hash = "sha256-iGgrno5ROSRyVGpwohObJ9a8GDSkr9PkHaM8nZ+R5KQ=";
+  };
+
+  web-assets = buildNpmPackage {
+    pname = "${pname}-web-assets";
+    inherit version src;
+
+    npmDepsHash = "sha256-aRod+SzVSb4bqEJzthfl/mH+DpbIe+j2+dNtrrhO2xU=";
+
+    installPhase = ''
+      runHook preInstall
+
+      install -Dm644 src/pytest_html/resources/{app.js,style.css} -t $out/lib
+
+      runHook postInstall
+    '';
   };
+in
+
+buildPythonPackage {
+  inherit pname version src;
+  format = "pyproject";
+
+  disabled = pythonOlder "3.6";
+
+  nativeBuildInputs = [
+    hatch-vcs
+    hatchling
+  ];
+  buildInputs = [ pytest web-assets ];
+  propagatedBuildInputs = [ jinja2 pytest-metadata ];
+
+  env.HATCH_BUILD_NO_HOOKS = true;
+
+  preBuild = ''
+    install -Dm644 ${web-assets}/lib/{app.js,style.css} -t src/pytest_html/resources
+  '';
+
+  # tests require network access
+  doCheck = false;
 
-  nativeBuildInputs = [ setuptools-scm ];
-  buildInputs = [ pytest ];
-  propagatedBuildInputs = [ pytest-metadata ];
+  pythonImportsCheck = [
+    "pytest_html"
+  ];
 
   meta = with lib; {
     description = "Plugin for generating HTML reports";
diff --git a/pkgs/development/python-modules/pytest-httpbin/default.nix b/pkgs/development/python-modules/pytest-httpbin/default.nix
index edfc988cc6c3..db94f2b6e163 100644
--- a/pkgs/development/python-modules/pytest-httpbin/default.nix
+++ b/pkgs/development/python-modules/pytest-httpbin/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "pytest-httpbin";
-  version = "1.0.2";
+  version = "2.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -19,8 +19,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "kevin1024";
     repo = "pytest-httpbin";
-    rev = "v${version}";
-    hash = "sha256-S4ThQx4H3UlKhunJo35esPClZiEn7gX/Qwo4kE1QMTI=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-tq9nz2na94HkLACt7xB1MUanh9/JOoe2vyEm5sAq0/4=";
   };
 
   buildInputs = [
@@ -32,17 +32,16 @@ buildPythonPackage rec {
     six
   ];
 
-  preCheck = ''
-    # Remove assertion that doesn't hold for Flask 2.1.0
-    substituteInPlace tests/test_server.py \
-      --replace "assert response.headers['Location'].startswith('https://')" ""
-  '';
-
   nativeCheckInputs = [
     pytestCheckHook
     requests
   ];
 
+  disabledTests = [
+    # incompatible with flask 2.3
+    "test_redirect_location_is_https_for_secure_server"
+  ];
+
   __darwinAllowLocalNetworking = true;
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/pytest-httpx/default.nix b/pkgs/development/python-modules/pytest-httpx/default.nix
index da22eea8d7f1..dbcfafc0a5fe 100644
--- a/pkgs/development/python-modules/pytest-httpx/default.nix
+++ b/pkgs/development/python-modules/pytest-httpx/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "pytest-httpx";
-  version = "0.22.0";
+  version = "0.25.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = "Colin-b";
     repo = "pytest_httpx";
     rev = "refs/tags/v${version}";
-    hash = "sha256-J5Y5G3/8d9hAtDFqweqA73amnXUpPbmb0uTrCslpl9k=";
+    hash = "sha256-8cuXsHyS9OaYXzKXgwan+mBFocyr39B9G8wr8I1pmg4=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pytest-jupyter/default.nix b/pkgs/development/python-modules/pytest-jupyter/default.nix
index f9e49cf09144..6f5f6484a570 100644
--- a/pkgs/development/python-modules/pytest-jupyter/default.nix
+++ b/pkgs/development/python-modules/pytest-jupyter/default.nix
@@ -22,14 +22,14 @@
 
 let self = buildPythonPackage rec {
   pname = "pytest-jupyter";
-  version = "0.6.2";
+  version = "0.7.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "jupyter-server";
     repo = "pytest-jupyter";
     rev = "refs/tags/v${version}";
-    hash = "sha256-kY4QHrlj0opEBywe4SpwE4Ck6l6JIzEosx6uuXh+yCQ=";
+    hash = "sha256-ZocpIBHnXTvQdjWU8yVhGK49I+FFct+teDhghiMnvW0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pytest-localserver/default.nix b/pkgs/development/python-modules/pytest-localserver/default.nix
index 23ac11d84ad0..4ab9c74be35e 100644
--- a/pkgs/development/python-modules/pytest-localserver/default.nix
+++ b/pkgs/development/python-modules/pytest-localserver/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "pytest-localserver";
-  version = "0.7.1";
+  version = "0.8.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-53tGVVy0OJMdIZxUvPn1lTwEB9ZFQ2pgK1cwur/T/js=";
+    hash = "sha256-XZDOfQhddB51n6hU29LnxbVXMh1pUXmJTrQOIQ6i/zA=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pytest-mypy-plugins/default.nix b/pkgs/development/python-modules/pytest-mypy-plugins/default.nix
index 4c041ce40c89..f4c809218fb0 100644
--- a/pkgs/development/python-modules/pytest-mypy-plugins/default.nix
+++ b/pkgs/development/python-modules/pytest-mypy-plugins/default.nix
@@ -1,19 +1,22 @@
 { lib
 , buildPythonPackage
-, chevron
 , decorator
 , fetchFromGitHub
+, jinja2
+, jsonschema
 , mypy
+, packaging
 , pytest
 , pytestCheckHook
 , pythonOlder
 , pyyaml
 , regex
+, tomlkit
 }:
 
 buildPythonPackage rec {
   pname = "pytest-mypy-plugins";
-  version = "1.11.1";
+  version = "3.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +25,7 @@ buildPythonPackage rec {
     owner = "typeddjango";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-UlNjqloAl0Qmy3EQ73e+KmsHeJN3eBkkBJxCehpOs48=";
+    hash = "sha256-kIA2tVOsKsav4tRqZiWCMcRgbRnxAEo7SpmxC2pt9B0=";
   };
 
   buildInputs = [
@@ -30,11 +33,18 @@ buildPythonPackage rec {
   ];
 
   propagatedBuildInputs = [
-    chevron
-    pyyaml
-    mypy
     decorator
+    jinja2
+    jsonschema
+    mypy
+    packaging
+    pyyaml
     regex
+    tomlkit
+  ];
+
+  pythonImportsCheck = [
+    "pytest_mypy_plugins"
   ];
 
   nativeCheckInputs = [
@@ -46,16 +56,8 @@ buildPythonPackage rec {
     export PATH="$PATH:$out/bin";
   '';
 
-  pythonImportsCheck = [
-    "pytest_mypy_plugins"
-  ];
-
-  disabledTests = [
-    # ...TypecheckAssertionError: Invalid output:
-    "with_out"
-    "add_mypypath_env_var_to_package_searc"
-    "error_case"
-    "skip_if_false"
+  disabledTestPaths = [
+    "pytest_mypy_plugins/tests/test_explicit_configs.py"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/pytest-param-files/default.nix b/pkgs/development/python-modules/pytest-param-files/default.nix
index 80dea1dbeaad..55923b5ed266 100644
--- a/pkgs/development/python-modules/pytest-param-files/default.nix
+++ b/pkgs/development/python-modules/pytest-param-files/default.nix
@@ -2,30 +2,38 @@
 , buildPythonPackage
 , fetchFromGitHub
 , flit-core
+, ruamel-yaml
 , pytest
 , pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "pytest-param-files";
-  version = "0.3.4";
+  version = "0.6.0";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "chrisjsewell";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-Q7wWoggJN2w2a2umQHx5TsVcugqpovBEtOKruNMZQ8A=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-hgEEfKf9Kmah5WDNHoFWQJKLOs9Z5BDHiebXCdDc1zE=";
   };
 
-  format = "pyproject";
-
-  nativeBuildInputs = [ flit-core ];
+  nativeBuildInputs = [
+    flit-core
+  ];
 
   buildInputs = [
     pytest
   ];
 
-  pythonImportsCheck = [ "pytest_param_files" ];
+  propagatedBuildInputs = [
+    ruamel-yaml
+  ];
+
+  pythonImportsCheck = [
+    "pytest_param_files"
+  ];
 
   nativeCheckInputs = [
     pytestCheckHook
diff --git a/pkgs/development/python-modules/pytest-regressions/default.nix b/pkgs/development/python-modules/pytest-regressions/default.nix
index a9e56d3c43e2..e804a0482dc1 100644
--- a/pkgs/development/python-modules/pytest-regressions/default.nix
+++ b/pkgs/development/python-modules/pytest-regressions/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "pytest-regressions";
-  version = "2.4.2";
+  version = "2.5.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-6riee6SqM5vf4HsxBH6OanCx54RudKi7/DGliNAecwM=";
+    hash = "sha256-gYx4hMHP87q/ie67AsvCezB4VrGYVCfCTVLLgSoQb9k=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/pytest-trio/default.nix b/pkgs/development/python-modules/pytest-trio/default.nix
index 36f31a0288c8..872e9dc8fc0d 100644
--- a/pkgs/development/python-modules/pytest-trio/default.nix
+++ b/pkgs/development/python-modules/pytest-trio/default.nix
@@ -3,14 +3,14 @@
 
 buildPythonPackage rec {
   pname = "pytest-trio";
-  version = "0.7.0";
+  version = "0.8.0";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "python-trio";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0bhh2nknhp14jzsx4zzpqm4qnfaihyi65cjf6kf6qgdhc0ax6nf4";
+    sha256 = "sha256-gUH35Yk/pBD2EdCEt8D0XQKWU8BwmX5xtAW10qRhoYk=";
   };
 
   buildInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/pytest/default.nix b/pkgs/development/python-modules/pytest/default.nix
index 5fde855e58e3..d557bcf15e93 100644
--- a/pkgs/development/python-modules/pytest/default.nix
+++ b/pkgs/development/python-modules/pytest/default.nix
@@ -21,12 +21,12 @@
 
 buildPythonPackage rec {
   pname = "pytest";
-  version = "7.4.0";
+  version = "7.4.2";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-tL+MRb1Zk07YQAGtUeEbTuQNQKEinSx5+cWSsKP2vYo=";
+    hash = "sha256-p2YlnPq1ZKKtUssarhuIGnXD6340yjd5aXwj7UfEcGk=";
   };
 
   outputs = [
diff --git a/pkgs/development/python-modules/python-arango/default.nix b/pkgs/development/python-modules/python-arango/default.nix
index e9224b543b57..20a4819948ad 100644
--- a/pkgs/development/python-modules/python-arango/default.nix
+++ b/pkgs/development/python-modules/python-arango/default.nix
@@ -1,15 +1,24 @@
 { lib
-, arangodb
 , buildPythonPackage
 , fetchFromGitHub
 , pythonOlder
 , pytestCheckHook
-, pyjwt
-, pytest
-, mock
+
+# build-system
+, setuptools
+, setuptools-scm
+
+# dependencies
+, urllib3
 , requests
 , requests-toolbelt
-, setuptools
+, pyjwt
+, importlib-metadata
+, packaging
+
+# tests
+, arangodb
+, mock
 }:
 
 let
@@ -23,8 +32,8 @@ in
 
 buildPythonPackage rec {
   pname = "python-arango";
-  version = "7.5.7";
-  format = "setuptools";
+  version = "7.6.2";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
@@ -32,14 +41,24 @@ buildPythonPackage rec {
     owner = "ArangoDB-Community";
     repo = "python-arango";
     rev = "refs/tags/${version}";
-    hash = "sha256-cd2xE5rYLl3NOv/DZjmHRPCe224k4XyPjo9aXV1ZhvU=";
+    hash = "sha256-1n+3Rl945NQ3Ugd6UKhN429vTz1ky2Qr43fI0TrgrBU=";
   };
 
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+  ];
+
   propagatedBuildInputs = [
+    importlib-metadata
     requests
     requests-toolbelt
+    packaging
     pyjwt
     setuptools
+    urllib3
   ];
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/python-dbusmock/default.nix b/pkgs/development/python-modules/python-dbusmock/default.nix
index f350f6df619b..acb47fceb8b1 100644
--- a/pkgs/development/python-modules/python-dbusmock/default.nix
+++ b/pkgs/development/python-modules/python-dbusmock/default.nix
@@ -20,13 +20,13 @@ let
   '';
 in buildPythonPackage rec {
   pname = "python-dbusmock";
-  version = "0.28.7";
+  version = "0.29.1";
 
   src = fetchFromGitHub {
     owner = "martinpitt";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-AxRgoXPiFFFHQSj5/jU55hwWzHtutfjmD2IKGxYwd0A=";
+    hash = "sha256-sfvVLPTSTXjwyB0a2NyDIONv01FXZ40nHZwwo3oqI90=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/python-engineio/default.nix b/pkgs/development/python-modules/python-engineio/default.nix
index 9a0269c983f0..990cbd1be317 100644
--- a/pkgs/development/python-modules/python-engineio/default.nix
+++ b/pkgs/development/python-modules/python-engineio/default.nix
@@ -10,13 +10,14 @@
 , pytestCheckHook
 , pythonOlder
 , requests
+, simple-websocket
 , tornado
 , websocket-client
 }:
 
 buildPythonPackage rec {
   pname = "python-engineio";
-  version = "4.6.1";
+  version = "4.7.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -25,7 +26,21 @@ buildPythonPackage rec {
     owner = "miguelgrinberg";
     repo = "python-engineio";
     rev = "refs/tags/v${version}";
-    hash = "sha256-za2JY5Gu9MEqi3W1zxcuwYiJ5XLc43ig6Hdx/4JwDbY=";
+    hash = "sha256-jHXpPnrQlIpmQ2sY4y6AUx/6W8Pf+683s4NmmlwZO58=";
+  };
+
+  propagatedBuildInputs = [
+    simple-websocket
+  ];
+
+  passthru.optional-dependencies = {
+    client = [
+      requests
+      websocket-client
+    ];
+    asyncio_client = [
+      aiohttp
+    ];
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/python-lzo/default.nix b/pkgs/development/python-modules/python-lzo/default.nix
index 38a31fbb6cb6..e3f1b0922a6a 100644
--- a/pkgs/development/python-modules/python-lzo/default.nix
+++ b/pkgs/development/python-modules/python-lzo/default.nix
@@ -1,22 +1,32 @@
-{ lib, fetchPypi, buildPythonPackage, lzo, nose }:
+{ lib, fetchPypi, buildPythonPackage, lzo, pytestCheckHook, setuptools, wheel }:
 
 buildPythonPackage rec {
   pname = "python-lzo";
-  version = "1.14";
+  version = "1.15";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "83cbd8ecaae284735250e31d6c0ecc18ac08763fab2a8c910dc5a6910db6250c";
+    hash = "sha256-pXqqAMXDoFFd2fdCa6LPYBdn3BncAj2LmdShOwoye0k=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+    wheel
+  ];
+
   buildInputs = [ lzo ];
-  propagatedBuildInputs = [ ];
-  nativeCheckInputs = [ nose ];
+
+  nativeCheckInputs = [ pytestCheckHook ];
+
+  pythonImportsCheck = [
+    "lzo"
+  ];
 
   meta = with lib; {
     homepage = "https://github.com/jd-boyd/python-lzo";
     description = "Python bindings for the LZO data compression library";
-    license = licenses.gpl2;
+    license = licenses.gpl2Only;
     maintainers = [ maintainers.jbedo ];
   };
 }
diff --git a/pkgs/development/python-modules/python-multipart/default.nix b/pkgs/development/python-modules/python-multipart/default.nix
index 9078f41aeaca..3c04398e56d4 100644
--- a/pkgs/development/python-modules/python-multipart/default.nix
+++ b/pkgs/development/python-modules/python-multipart/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, hatchling
 , pytestCheckHook
 , mock
 , pyyaml
@@ -9,14 +10,19 @@
 
 buildPythonPackage rec {
   pname = "python-multipart";
-  version = "0.0.5";
-  format = "setuptools";
+  version = "0.0.6";
+  format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    sha256 = "f7bb5f611fc600d15fa47b3974c8aa16e93724513b49b5f95c81e6624c83fa43";
+    pname = "python_multipart";
+    inherit version;
+    hash = "sha256-6ZJagLtmhSnxtnx/2wpdrN18v8b7C/8+pEP+Ir3WITI=";
   };
 
+  nativeBuildInputs = [
+    hatchling
+  ];
+
   propagatedBuildInputs = [
     six
   ];
diff --git a/pkgs/development/python-modules/python-ndn/default.nix b/pkgs/development/python-modules/python-ndn/default.nix
index a96501dbbf3c..6c47e8189a92 100644
--- a/pkgs/development/python-modules/python-ndn/default.nix
+++ b/pkgs/development/python-modules/python-ndn/default.nix
@@ -23,7 +23,7 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "named-data";
     repo = pname;
-    rev = "v${version}";
+    rev = "refs/tags/v${version}";
     hash = "sha256-ArTP4LQu7VNjI/N13gMTc1SDiNmW5l4GdLYOk8JEfKg=";
   };
 
diff --git a/pkgs/development/python-modules/python-osc/default.nix b/pkgs/development/python-modules/python-osc/default.nix
index 27a5a084fa45..500e6beb0b0e 100644
--- a/pkgs/development/python-modules/python-osc/default.nix
+++ b/pkgs/development/python-modules/python-osc/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "python-osc";
-  version = "1.8.1";
+  version = "1.8.3";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-69a3z4rjhzgPSOnW1zabrRwXahr2YI79eIi1C08OdK0=";
+    hash = "sha256-pc4bpWyNgt9Ryz8pRrXdM6cFInkazEuFZOYtKyCtnKo=";
   };
 
   pythonImportsCheck = [ "pythonosc" ];
diff --git a/pkgs/development/python-modules/python-socks/default.nix b/pkgs/development/python-modules/python-socks/default.nix
index 4cb8273b78bc..c6b59b0ac985 100644
--- a/pkgs/development/python-modules/python-socks/default.nix
+++ b/pkgs/development/python-modules/python-socks/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "python-socks";
-  version = "2.1.1";
+  version = "2.4.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.6.2";
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     owner = "romis2012";
     repo = "python-socks";
     rev = "refs/tags/v${version}";
-    hash = "sha256-QvUuCS8B/6+dgzWrflizLfNlAUeOPpUPtmFaE6LGYGc=";
+    hash = "sha256-HnZrnsxPmRJzrvJbKS5r+di+msykDwWS7TB5CitIve8=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/python-tado/default.nix b/pkgs/development/python-modules/python-tado/default.nix
index 97e6215f1d9d..017be9041dc1 100644
--- a/pkgs/development/python-modules/python-tado/default.nix
+++ b/pkgs/development/python-modules/python-tado/default.nix
@@ -6,9 +6,9 @@
 , requests
 }:
 
-buildPythonPackage {
+buildPythonPackage rec {
   pname = "python-tado";
-  version = "0.16.0";
+  version = "0.17.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.5";
@@ -17,8 +17,8 @@ buildPythonPackage {
     owner = "wmalgadey";
     repo = "PyTado";
     # https://github.com/wmalgadey/PyTado/issues/62
-    rev = "674dbc450170a380e76460c22d6ba943dfedb8e9";
-    hash = "sha256-gduqQVw/a64aDzTHFmgZu7OVB53jZb7L5vofzL3Ho6s=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-w1qtSEpnZCs7+M/0Gywz9AeMxUzz2csHKm9SxBKzmz4=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/python-telegram-bot/default.nix b/pkgs/development/python-modules/python-telegram-bot/default.nix
index 93969551842b..262f1d22e8ca 100644
--- a/pkgs/development/python-modules/python-telegram-bot/default.nix
+++ b/pkgs/development/python-modules/python-telegram-bot/default.nix
@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "python-telegram-bot";
-  version = "20.5";
+  version = "20.6";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -30,7 +30,7 @@ buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-/AdGpOl87EeVDCAZLjtan7ttE2vUL0gi1qeM18ilYEQ=";
+    hash = "sha256-t6yHl2uNdGaTLdbQTXp3+zds2pab4T6Pe69mu31HahA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/python-telegram/default.nix b/pkgs/development/python-modules/python-telegram/default.nix
index a79362a93422..405f74bebda8 100644
--- a/pkgs/development/python-modules/python-telegram/default.nix
+++ b/pkgs/development/python-modules/python-telegram/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "python-telegram";
-  version = "0.15.0";
+  version = "0.18.0";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Na2NIiVgYexKbEqjN58hfkgxwFdCTL7Z7D3WEhL4wXA=";
+    hash = "sha256-UbJW/op01qe/HchfJUlBPBY9/W8NbZkEmFM8gZ5+EmI=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/python-uinput/default.nix b/pkgs/development/python-modules/python-uinput/default.nix
index efb1288943af..8a187257ca76 100644
--- a/pkgs/development/python-modules/python-uinput/default.nix
+++ b/pkgs/development/python-modules/python-uinput/default.nix
@@ -1,5 +1,8 @@
-{ lib, buildPythonPackage, fetchPypi
-, udev }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, udev
+}:
 
 buildPythonPackage rec {
   pname = "python-uinput";
@@ -14,6 +17,8 @@ buildPythonPackage rec {
 
   NIX_CFLAGS_LINK = "-ludev";
 
+  doCheck = false; # no tests
+
   meta = with lib; {
     description = "Pythonic API to Linux uinput kernel module";
     homepage = "https://tjjr.fi/sw/python-uinput/";
diff --git a/pkgs/development/python-modules/python-ulid/default.nix b/pkgs/development/python-modules/python-ulid/default.nix
new file mode 100644
index 000000000000..db1456dc3186
--- /dev/null
+++ b/pkgs/development/python-modules/python-ulid/default.nix
@@ -0,0 +1,48 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+, hatch-fancy-pypi-readme
+, hatch-vcs
+, hatchling
+, freezegun
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "python-ulid";
+  version = "2.2.0";
+  pyproject = true;
+
+  disabled = pythonOlder "3.9";
+
+  src = fetchFromGitHub {
+    owner = "mdomke";
+    repo = "python-ulid";
+    rev = "refs/tags/${version}";
+    hash = "sha256-d5jCPxWUOfw/OCtbA9Db9+s1D5DAdL+vbPR8zavgbbo=";
+  };
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeBuildInputs = [
+    hatch-fancy-pypi-readme
+    hatch-vcs
+    hatchling
+  ];
+
+  nativeCheckInputs = [
+    freezegun
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [ "ulid" ];
+
+  meta = with lib; {
+    description = "ULID implementation for Python";
+    homepage = "https://github.com/mdomke/python-ulid";
+    changelog = "https://github.com/mdomke/python-ulid/blob/${src.rev}/CHANGELOG.rst";
+    license = licenses.mit;
+    maintainers = with maintainers; [ natsukium ];
+  };
+}
diff --git a/pkgs/development/python-modules/python3-saml/default.nix b/pkgs/development/python-modules/python3-saml/default.nix
index 981f963db389..7a5d8bccaa31 100644
--- a/pkgs/development/python-modules/python3-saml/default.nix
+++ b/pkgs/development/python-modules/python3-saml/default.nix
@@ -24,14 +24,23 @@ buildPythonPackage rec {
   };
 
   patches = [
+    # skip tests with expired test data
+    # upstream issue: https://github.com/SAML-Toolkits/python3-saml/issues/373
     (fetchpatch {
       name = "test-expired.patch";
       url = "https://github.com/SAML-Toolkits/python3-saml/commit/bd65578e5a21494c89320094c61c1c77250bea33.diff";
       hash = "sha256-9Trew6R5JDjtc0NRGoklqMVDEI4IEqFOdK3ezyBU6gI=";
     })
-    # skip tests with expired test data
-    # upstream issue: https://github.com/SAML-Toolkits/python3-saml/issues/373
-    ./skip-broken-tests.patch
+    (fetchpatch {
+      name = "test-expired.patch";
+      url = "https://github.com/SAML-Toolkits/python3-saml/commit/ea3a6d4ee6ea0c5cfb0f698d8c0ed25638150f47.patch";
+      hash = "sha256-Q9+GM+mCEZK0QVp7ulH2hORVig2411OvkC4+o36DeXg=";
+    })
+    (fetchpatch {
+      name = "test-expired.patch";
+      url = "https://github.com/SAML-Toolkits/python3-saml/commit/feb0d1d954ee4d0ad1ad1d7d536bf9e83fa9431b.patch";
+      hash = "sha256-NURGI4FUnFlWRZfkioU9IYmZ+Zk9FKfZchjdn7N9abU=";
+    })
   ];
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/python3-saml/skip-broken-tests.patch b/pkgs/development/python-modules/python3-saml/skip-broken-tests.patch
deleted file mode 100644
index ea845e7da3de..000000000000
--- a/pkgs/development/python-modules/python3-saml/skip-broken-tests.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-diff --git a/tests/src/OneLogin/saml2_tests/response_test.py b/tests/src/OneLogin/saml2_tests/response_test.py
-index fbe714f..bbed3c2 100644
---- a/tests/src/OneLogin/saml2_tests/response_test.py
-+++ b/tests/src/OneLogin/saml2_tests/response_test.py
-@@ -562,6 +562,7 @@ class OneLogin_Saml2_Response_Test(unittest.TestCase):
-         response_2 = OneLogin_Saml2_Response(settings, xml_2)
-         self.assertTrue(response_2.check_one_condition())
- 
-+    @unittest.skip("test data expired")
-     def testCheckOneAuthnStatement(self):
-         """
-         Tests the check_one_authnstatement method of SamlResponse
-@@ -970,6 +971,7 @@ class OneLogin_Saml2_Response_Test(unittest.TestCase):
-         with self.assertRaisesRegex(Exception, 'Could not validate timestamp: expired. Check system clock.'):
-             response_2.is_valid(self.get_request_data(), raise_exceptions=True)
- 
-+    @unittest.skip("test data expired")
-     def testIsInValidNoStatement(self):
-         """
-         Tests the is_valid method of the OneLogin_Saml2_Response
-@@ -1080,6 +1082,7 @@ class OneLogin_Saml2_Response_Test(unittest.TestCase):
-         with self.assertRaisesRegex(Exception, 'Found an Attribute element with duplicated Name'):
-             response.get_attributes()
- 
-+    @unittest.skip("test data expired")
-     def testIsInValidDestination(self):
-         """
-         Tests the is_valid method of the OneLogin_Saml2_Response class
diff --git a/pkgs/development/python-modules/pytorch-pfn-extras/default.nix b/pkgs/development/python-modules/pytorch-pfn-extras/default.nix
index 3bd169bc1af8..138dc5f502fa 100644
--- a/pkgs/development/python-modules/pytorch-pfn-extras/default.nix
+++ b/pkgs/development/python-modules/pytorch-pfn-extras/default.nix
@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "pytorch-pfn-extras";
-  version = "0.6.4";
+  version = "0.7.2";
 
   src = fetchFromGitHub {
     owner = "pfnet";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-x1aE/55+2QwYG3Hhy35j26jLAj9O5orrU/c4KlTTOcc=";
+    hash = "sha256-juoLw/qfq4YF7opyR7cTYCVzUa9pXVvQnvGntcQhBr4=";
   };
 
   propagatedBuildInputs = [ numpy packaging torch typing-extensions ];
diff --git a/pkgs/development/python-modules/pytz/default.nix b/pkgs/development/python-modules/pytz/default.nix
index ad4f76baf667..8d4bcfbb3c6f 100644
--- a/pkgs/development/python-modules/pytz/default.nix
+++ b/pkgs/development/python-modules/pytz/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "pytz";
-  version = "2023.3";
+  version = "2023.3.post1";
 
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-HYzinbGJGR+1UzjubQOH2Cq1nz0A6sEDQS1k4OvQxYg=";
+    hash = "sha256-e0/dvrlKHrpLVX2iTxn9+dtXUZJUQnCpEB2FCfn0PXs=";
   };
 
   nativeCheckInputs = [ unittestCheckHook ];
diff --git a/pkgs/development/python-modules/pyvis/default.nix b/pkgs/development/python-modules/pyvis/default.nix
index c4698744531b..a9fea2dc6830 100644
--- a/pkgs/development/python-modules/pyvis/default.nix
+++ b/pkgs/development/python-modules/pyvis/default.nix
@@ -6,31 +6,38 @@
 , jinja2
 , ipython
 , jsonpickle
+, pytestCheckHook
 , numpy
 }:
 
 buildPythonPackage rec {
   pname = "pyvis";
-  version = "0.2.1";
+  version = "0.3.2";
+  format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "WestHealth";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-cER5XYxnURzRLtrisWBu2kxtOiRqgaRTJYyaCMh2qqE=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-eo9Mk2c0hrBarCrzwmkXha3Qt4Bl1qR7Lhl9EkUx96E=";
   };
 
-  patches = [
-    # Fix test: https://github.com/WestHealth/pyvis/issues/138
-    (fetchpatch {
-      url = "https://github.com/WestHealth/pyvis/commit/eaa24b882401e2e74353efa78bf4e71a880cfc47.patch";
-      hash = "sha256-hyDypavoCM36SiuQda1U4FLUPdAjTIMtaeZ0KqfHKzI=";
-    })
+  propagatedBuildInputs = [
+    jinja2
+    networkx
+    ipython
+    jsonpickle
   ];
 
-  propagatedBuildInputs = [ networkx jinja2 ipython jsonpickle ];
+  nativeCheckInputs = [
+    pytestCheckHook
+    numpy
+  ];
 
-  nativeCheckInputs = [ numpy ];
+  disabledTestPaths = [
+    # jupyter integration test with selenium and webdriver_manager
+    "pyvis/tests/test_html.py"
+  ];
 
   pythonImportsCheck = [ "pyvis" ];
 
@@ -38,6 +45,6 @@ buildPythonPackage rec {
     homepage = "https://github.com/WestHealth/pyvis";
     description = "Python package for creating and visualizing interactive network graphs";
     license = licenses.bsd3;
-    maintainers = with maintainers; [ ];
+    maintainers = with maintainers; [ pbsds ];
   };
 }
diff --git a/pkgs/development/python-modules/pyvo/default.nix b/pkgs/development/python-modules/pyvo/default.nix
index 72801ee30690..4498b4f15090 100644
--- a/pkgs/development/python-modules/pyvo/default.nix
+++ b/pkgs/development/python-modules/pyvo/default.nix
@@ -14,23 +14,15 @@
 
 buildPythonPackage rec {
   pname = "pyvo";
-  version = "1.4";
+  version = "1.4.2";
 
   disabled = pythonOlder "3.8"; # according to setup.cfg
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-R2ttLoFd6Ic0KZl49dzN5NtWAqPpXRaeki6X8CRGsCw=";
+    hash = "sha256-Zv4piGWs/XJbxfGHUHctfxuImbjluxd1chUgvtV9lcs=";
   };
 
-  patches = [
-    # Backport Python 3.11 support.
-    (fetchpatch {
-      url = "https://patch-diff.githubusercontent.com/raw/astropy/pyvo/pull/385.patch";
-      sha256 = "IHf3W9fIT8XFvyM41PUiJkt1j+B3RkX3TS4FOnRUMDk=";
-    })
-  ];
-
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pywebview/default.nix b/pkgs/development/python-modules/pywebview/default.nix
index 84e2a3f64442..04df94d137ef 100644
--- a/pkgs/development/python-modules/pywebview/default.nix
+++ b/pkgs/development/python-modules/pywebview/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "pywebview";
-  version = "4.1";
+  version = "4.3.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.5";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     owner = "r0x0r";
     repo = "pywebview";
     rev = "refs/tags/${version}";
-    hash = "sha256-oqyWT0GaZ201OMVRcRpm1dma6NonTMmTx5SKnjzQl3M=";
+    hash = "sha256-8BkbO7C8cYDIQWWCKaXFjfD45L5KVG1tDZJl+uW5g9g=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pyyaml-include/default.nix b/pkgs/development/python-modules/pyyaml-include/default.nix
index 92ec25186f50..176d402e99c1 100644
--- a/pkgs/development/python-modules/pyyaml-include/default.nix
+++ b/pkgs/development/python-modules/pyyaml-include/default.nix
@@ -1,25 +1,35 @@
-{ lib, buildPythonPackage, fetchPypi
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
 , pytestCheckHook
 , pyyaml
+, setuptools
 , setuptools-scm
-, setuptools-scm-git-archive
-, toml
+, wheel
 }:
 
 buildPythonPackage rec {
   pname = "pyyaml-include";
-  version = "1.3";
+  version = "1.3.1";
+  format = "pyproject";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-9/vrjnG1C+Dm4HRy98edv7GhW63pyToHg2n/SeV+Z3E=";
+  src = fetchFromGitHub {
+    owner = "tanbro";
+    repo = "pyyaml-include";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-xsNMIEBYqMVQp+H8R7XpFCwROXA8I6bFvAuHrRvC+DI=";
   };
 
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
   nativeBuildInputs = [
-    pyyaml
+    setuptools
     setuptools-scm
-    setuptools-scm-git-archive
-    toml
+    wheel
+  ];
+
+  propagatedBuildInputs = [
+    pyyaml
   ];
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/pyzmq/default.nix b/pkgs/development/python-modules/pyzmq/default.nix
index 74f5b3afc1d6..88fbf7d63c05 100644
--- a/pkgs/development/python-modules/pyzmq/default.nix
+++ b/pkgs/development/python-modules/pyzmq/default.nix
@@ -7,18 +7,19 @@
 , pythonOlder
 , tornado
 , zeromq
+, pytest-asyncio
 }:
 
 buildPythonPackage rec {
   pname = "pyzmq";
-  version = "24.0.1";
+  version = "25.1.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-IW9dfbtnFmdZ5ZsEebyoK4rPm+1gFbUmuOsQFD+wjnc=";
+    hash = "sha256-JZwiSFtxq6zfqL95cgzXvPS50SizDqVU8BrnH9v9qiM=";
   };
 
   buildInputs = [
@@ -32,6 +33,7 @@ buildPythonPackage rec {
   nativeCheckInputs = [
     pytestCheckHook
     tornado
+    pytest-asyncio
   ];
 
   pythonImportsCheck = [
@@ -40,6 +42,9 @@ buildPythonPackage rec {
 
   pytestFlagsArray = [
     "$out/${python.sitePackages}/zmq/tests/" # Folder with tests
+    # pytest.ini is missing in pypi's sdist
+    # https://github.com/zeromq/pyzmq/issues/1853#issuecomment-1592731986
+    "--asyncio-mode auto"
   ];
 
   disabledTests = [
diff --git a/pkgs/development/python-modules/qcelemental/default.nix b/pkgs/development/python-modules/qcelemental/default.nix
index 9ac348304e5e..78fdcc99d267 100644
--- a/pkgs/development/python-modules/qcelemental/default.nix
+++ b/pkgs/development/python-modules/qcelemental/default.nix
@@ -2,11 +2,11 @@
 , buildPythonPackage
 , lib
 , fetchPypi
+, poetry-core
 , networkx
 , numpy
 , pint
 , pydantic
-, poetry-core
 , pytestCheckHook
 , pythonOlder
 }:
@@ -24,7 +24,9 @@ buildPythonPackage rec {
     hash = "sha256-oU6FEM2/2mRe8UYcGv0C77WZMRcz27pfg/zR1haKbd0=";
   };
 
-  nativeBuildInputs = [ poetry-core ];
+  nativeBuildInputs = [
+    poetry-core
+  ];
 
   propagatedBuildInputs = [
     networkx
diff --git a/pkgs/development/python-modules/qcodes-loop/default.nix b/pkgs/development/python-modules/qcodes-loop/default.nix
index ee9cb180a35a..80355c1b5341 100644
--- a/pkgs/development/python-modules/qcodes-loop/default.nix
+++ b/pkgs/development/python-modules/qcodes-loop/default.nix
@@ -27,7 +27,7 @@
 
 buildPythonPackage rec {
   pname = "qcodes-loop";
-  version = "0.1.1";
+  version = "0.1.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -35,7 +35,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     inherit version;
     pname = "qcodes_loop";
-    hash = "sha256-pDR0Ws8cYQifftdE9dKcSzMxmouFo4tJmQvNanm6zyM=";
+    hash = "sha256-TizNSC49n4Xc2BmJNziARlVXYQxp/LtwmKpgqQkQ3a8=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/qcodes/default.nix b/pkgs/development/python-modules/qcodes/default.nix
index fb70d6d1f788..2083000992bc 100644
--- a/pkgs/development/python-modules/qcodes/default.nix
+++ b/pkgs/development/python-modules/qcodes/default.nix
@@ -18,6 +18,7 @@
 , numpy
 , opencensus
 , opencensus-ext-azure
+, opentelemetry-api
 , packaging
 , pandas
 , pyvisa
@@ -53,14 +54,14 @@
 
 buildPythonPackage rec {
   pname = "qcodes";
-  version = "0.39.1";
+  version = "0.40.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-2gJ/WeynabiGB1Z66+qaUbf6/1wogf/XjIE2mCAXUZY=";
+    sha256 = "sha256-C8/ltX3tSxCbbheuel3BjIkRBl/E92lK709QYx+2FL0=";
   };
 
   postPatch = ''
@@ -86,6 +87,7 @@ buildPythonPackage rec {
     numpy
     opencensus
     opencensus-ext-azure
+    opentelemetry-api
     packaging
     pandas
     pillow
@@ -159,9 +161,10 @@ buildPythonPackage rec {
   '';
 
   meta = with lib; {
+    changelog = "https://github.com/QCoDeS/Qcodes/releases/tag/v${version}";
     description = "Python-based data acquisition framework";
+    downloadPage = "https://github.com/QCoDeS/Qcodes";
     homepage = "https://qcodes.github.io/Qcodes/";
-    changelog = "https://github.com/QCoDeS/Qcodes/releases/tag/v${version}";
     license = licenses.mit;
     maintainers = with maintainers; [ evilmav ];
   };
diff --git a/pkgs/development/python-modules/qdldl/default.nix b/pkgs/development/python-modules/qdldl/default.nix
index 25d28dc4d069..8369bbf2a33d 100644
--- a/pkgs/development/python-modules/qdldl/default.nix
+++ b/pkgs/development/python-modules/qdldl/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "qdldl";
-  version = "0.1.5.post3";
+  version = "0.1.7.post0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-acCS9uH8I/t3moCmLm/N/i66BcklhgJIxNZ1T0c2k48=";
+    hash = "sha256-80ahFMg0LubU29ZHHu8xQZn7Jo0797lYhco1H94rAj8=";
   };
 
   dontUseCmakeConfigure = true;
diff --git a/pkgs/development/python-modules/qiskit-aer/default.nix b/pkgs/development/python-modules/qiskit-aer/default.nix
index 60d5efc9e329..e774990fb999 100644
--- a/pkgs/development/python-modules/qiskit-aer/default.nix
+++ b/pkgs/development/python-modules/qiskit-aer/default.nix
@@ -31,7 +31,7 @@
 
 buildPythonPackage rec {
   pname = "qiskit-aer";
-  version = "0.11.2";
+  version = "0.12.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
@@ -40,7 +40,7 @@ buildPythonPackage rec {
     owner = "Qiskit";
     repo = "qiskit-aer";
     rev = "refs/tags/${version}";
-    hash = "sha256-ew9ucqOWDztjB+hJTh9WkJiutVBJyVQobtEcWeUwEcw=";
+    hash = "sha256-K8Avh1j9j5CGdEYIeJJRF+PjUFXvVILkZLqX1QClInE=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix b/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix
index 8e2de37788d3..4bf996a26507 100644
--- a/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix
+++ b/pkgs/development/python-modules/qiskit-ibmq-provider/default.nix
@@ -40,7 +40,7 @@ let
 in
 buildPythonPackage rec {
   pname = "qiskit-ibmq-provider";
-  version = "0.20.1";
+  version = "0.20.2";
 
   disabled = pythonOlder "3.6";
 
@@ -48,7 +48,7 @@ buildPythonPackage rec {
     owner = "Qiskit";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-BFiGMPiO9Xcl8EiTZYiwHCpo7z+tRaBkIb8GTo01rBA=";
+    hash = "sha256-7dIspeJpukLDfICoBPPZZWdzkVumtvh+NRxvtmnvWH0=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/qiskit-machine-learning/default.nix b/pkgs/development/python-modules/qiskit-machine-learning/default.nix
index 28d572afc378..1c23fb3b0398 100644
--- a/pkgs/development/python-modules/qiskit-machine-learning/default.nix
+++ b/pkgs/development/python-modules/qiskit-machine-learning/default.nix
@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "qiskit-machine-learning";
-  version = "0.5.0";
+  version = "0.6.1";
 
   disabled = pythonOlder "3.6";
 
@@ -29,7 +29,7 @@ buildPythonPackage rec {
     owner = "qiskit";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-wK0ZRNnU7WJlTWRJ2ce6LN6WGKlkh5jBrbXMDYcPQJI=";
+    hash = "sha256-oSLQvZGEq/nBj7ktDEq3BMk7xyYiLGpBDmKxuXtMTfs=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/qiskit-nature/default.nix b/pkgs/development/python-modules/qiskit-nature/default.nix
index 629dc04bd3f4..8fc30687f69e 100644
--- a/pkgs/development/python-modules/qiskit-nature/default.nix
+++ b/pkgs/development/python-modules/qiskit-nature/default.nix
@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "qiskit-nature";
-  version = "0.5.2";
+  version = "0.6.2";
 
   disabled = pythonOlder "3.6";
 
@@ -29,7 +29,7 @@ buildPythonPackage rec {
     owner = "Qiskit";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-rUY5fnsWg2UisF0tGORvHot8laCs8eVAvuVKUOG5ibw=";
+    hash = "sha256-X/4jA/e2nmmaVEiCgd/4KJc/sAdcYDkyKzvyVztovXM=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/qiskit-terra/default.nix b/pkgs/development/python-modules/qiskit-terra/default.nix
index f6c5010fbfb7..2c290493b063 100644
--- a/pkgs/development/python-modules/qiskit-terra/default.nix
+++ b/pkgs/development/python-modules/qiskit-terra/default.nix
@@ -58,15 +58,15 @@ in
 
 buildPythonPackage rec {
   pname = "qiskit-terra";
-  version = "0.21.0";
+  version = "0.25.1";
 
   disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "qiskit";
     repo = pname;
-    rev = version;
-    hash = "sha256-imktzBpgP+lq6FsVWIUK82+t76gKTgt53kPfKOnsseQ=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-4/LVKDNxKsRztCtU/mMfKMVHHJqfadZXmxeOlnlz9Tc=";
   };
 
   nativeBuildInputs = [ setuptools-rust rustc cargo rustPlatform.cargoSetupHook ];
diff --git a/pkgs/development/python-modules/qpsolvers/default.nix b/pkgs/development/python-modules/qpsolvers/default.nix
index 367416c29602..1ab12f28412c 100644
--- a/pkgs/development/python-modules/qpsolvers/default.nix
+++ b/pkgs/development/python-modules/qpsolvers/default.nix
@@ -14,14 +14,14 @@
 }:
 buildPythonPackage rec {
   pname = "qpsolvers";
-  version = "3.4.0";
+  version = "4.0.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "qpsolvers";
     repo = "qpsolvers";
-    rev = "v${version}";
-    hash = "sha256-GrYAhTWABBvU6rGoHi00jBa7ryjCNgzO/hQBTdSW9cg=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-KkV61pBkIh+4Qav9TVobEBUCyMa6Xqg+eygnOoQRpcQ=";
   };
 
   pythonImportsCheck = [ "qpsolvers" ];
diff --git a/pkgs/development/python-modules/quart-cors/default.nix b/pkgs/development/python-modules/quart-cors/default.nix
index 8ffe47b4eda4..78f3f0311f88 100644
--- a/pkgs/development/python-modules/quart-cors/default.nix
+++ b/pkgs/development/python-modules/quart-cors/default.nix
@@ -12,18 +12,19 @@
 
 # tests
 , pytestCheckHook
+, pytest-asyncio
 }:
 
 buildPythonPackage rec {
   pname = "quart-cors";
-  version = "0.6.0";
+  version = "0.7.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "pgjones";
     repo = "quart-cors";
     rev = "refs/tags/${version}";
-    hash = "sha256-SbnYrpeyEn47JgP9p3Us0zfkjC1sJ7jPPUIHYHAiSgc=";
+    hash = "sha256-qUzs0CTZHf3fGADBXPkd3CjZ6dnz1t3cTxflMErvz/k=";
   };
 
   nativeBuildInputs = [
@@ -47,6 +48,7 @@ buildPythonPackage rec {
 
   nativeCheckInputs = [
     pytestCheckHook
+    pytest-asyncio
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/quart/default.nix b/pkgs/development/python-modules/quart/default.nix
index 932d972eef76..6cf51d6920ff 100644
--- a/pkgs/development/python-modules/quart/default.nix
+++ b/pkgs/development/python-modules/quart/default.nix
@@ -75,6 +75,11 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
+  disabledTestPaths = [
+    # remove after 0.18.4
+    "tests/test_signals.py"
+  ];
+
   meta = with lib; {
     description = "An async Python micro framework for building web applications";
     homepage = "https://github.com/pallets/quart/";
diff --git a/pkgs/development/python-modules/rdflib/default.nix b/pkgs/development/python-modules/rdflib/default.nix
index dc5ddf9cdfdb..471439b28e5c 100644
--- a/pkgs/development/python-modules/rdflib/default.nix
+++ b/pkgs/development/python-modules/rdflib/default.nix
@@ -4,6 +4,9 @@
 , fetchFromGitHub
 , pythonOlder
 
+# builds
+, poetry-core
+
 # propagates
 , isodate
 , pyparsing
@@ -25,18 +28,22 @@
 
 buildPythonPackage rec {
   pname = "rdflib";
-  version = "6.2.0";
-  format = "setuptools";
+  version = "7.0.0";
+  format = "pyproject";
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchFromGitHub {
     owner = "RDFLib";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-GkqfSyApOFKPIiIYXhgaRZuMawk7PRYmxGDhnRI+Rz0=";
+    hash = "sha256-VCjvgXMun1Hs+gPeqjzLXbIX1NBQ5aMLz0aWlwsm0iY=";
   };
 
+  nativeBuildInputs = [
+    poetry-core
+  ];
+
   propagatedBuildInputs = [
     isodate
     html5lib
@@ -76,6 +83,7 @@ buildPythonPackage rec {
     "testGuessFormatForParse"
     "test_infix_owl_example1"
     "test_context"
+    "test_example"
     "test_guess_format_for_parse"
     "rdflib.extras.infixowl"
   ] ++ lib.optionals stdenv.isDarwin [
diff --git a/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix b/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix
index 0451d63cc3d1..fc2fd653083d 100644
--- a/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix
+++ b/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "readthedocs-sphinx-ext";
-  version = "2.2.0";
+  version = "2.2.2";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-5e/82CWBYRGjd6t6iXuBkhUTj45eisyG+ZIYMo+VckA=";
+    hash = "sha256-kiF77xTZE3e88nvffaNj5XSzseQYC2Xu9ufPpV8P0Lg=";
   };
 
   propagatedBuildInputs = [ requests ];
diff --git a/pkgs/development/python-modules/recipe-scrapers/default.nix b/pkgs/development/python-modules/recipe-scrapers/default.nix
index f2a9f17ab670..c5b7fcb88b76 100644
--- a/pkgs/development/python-modules/recipe-scrapers/default.nix
+++ b/pkgs/development/python-modules/recipe-scrapers/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "recipe-scrapers";
-  version = "14.43.0";
+  version = "14.46.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "hhursev";
     repo = "recipe-scrapers";
     rev = "refs/tags/${version}";
-    hash = "sha256-ik/ADmu6yGY7xWXCAn0kcWJphANIIwM8QKWjm9xoVYQ=";
+    hash = "sha256-XCcunwqmcvPC5AVxR9mit06BRDTYfu/CeTXg3IH7Dy0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/recordlinkage/default.nix b/pkgs/development/python-modules/recordlinkage/default.nix
index 4d8ab8e8a8c9..7b92cfacebf9 100644
--- a/pkgs/development/python-modules/recordlinkage/default.nix
+++ b/pkgs/development/python-modules/recordlinkage/default.nix
@@ -15,6 +15,7 @@
 , scipy
 , setuptools
 , setuptools-scm
+, wheel
 }:
 
 buildPythonPackage rec {
@@ -32,6 +33,7 @@ buildPythonPackage rec {
   nativeBuildInputs = [
     setuptools
     setuptools-scm
+    wheel
   ];
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/redis-om/default.nix b/pkgs/development/python-modules/redis-om/default.nix
new file mode 100644
index 000000000000..af0170cbf322
--- /dev/null
+++ b/pkgs/development/python-modules/redis-om/default.nix
@@ -0,0 +1,85 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+, unasync
+, poetry-core
+, python
+, click
+, hiredis
+, more-itertools
+, pydantic
+, python-ulid
+, redis
+, types-redis
+, typing-extensions
+, pkgs
+, pytest-asyncio
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "redis-om";
+  version = "0.2.1";
+  pyproject = true;
+
+  disabled = pythonOlder "3.8";
+
+  src = fetchFromGitHub {
+    owner = "redis";
+    repo = "redis-om-python";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-jQS0VTYZeAj3+OVFy+JP4mUFBPo+a5D/kdJKagFraaA=";
+  };
+
+  nativeBuildInputs = [
+    unasync
+    poetry-core
+  ];
+
+  propagatedBuildInputs = [
+    click
+    hiredis
+    more-itertools
+    pydantic
+    python-ulid
+    redis
+    types-redis
+    typing-extensions
+  ];
+
+  preBuild = ''
+    ${python.pythonForBuild.interpreter} make_sync.py
+  '';
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-asyncio
+  ];
+
+  preCheck = ''
+    ${pkgs.redis}/bin/redis-server &
+    REDIS_PID=$!
+  '';
+
+  postCheck = ''
+    kill $REDIS_PID
+  '';
+
+  # probably require redisearch
+  # https://github.com/redis/redis-om-python/issues/532
+  doCheck = false;
+
+  pythonImportsCheck = [
+    "aredis_om"
+    "redis_om"
+  ];
+
+  meta = with lib; {
+    description = "Object mapping, and more, for Redis and Python";
+    homepage = "https://github.com/redis/redis-om-python";
+    changelog = "https://github.com/redis/redis-om-python/releases/tag/${src.rev}";
+    license = licenses.mit;
+    maintainers = with maintainers; [ natsukium ];
+  };
+}
diff --git a/pkgs/development/python-modules/redis/default.nix b/pkgs/development/python-modules/redis/default.nix
index d99b25374a13..2616e1da9f4d 100644
--- a/pkgs/development/python-modules/redis/default.nix
+++ b/pkgs/development/python-modules/redis/default.nix
@@ -21,14 +21,14 @@
 
 buildPythonPackage rec {
   pname = "redis";
-  version = "4.5.4";
+  version = "5.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-c+w12k2iZ9aEfkf2hzD91fYuLKaePvWIXGp4qTdMOJM=";
+    hash = "sha256-XOpsDTNcmnMypGDthynOq7TQxInHKFsKhtu/igF70SA=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/redshift-connector/default.nix b/pkgs/development/python-modules/redshift-connector/default.nix
index 1c739ebb0780..7bf21823e7bb 100644
--- a/pkgs/development/python-modules/redshift-connector/default.nix
+++ b/pkgs/development/python-modules/redshift-connector/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "redshift-connector";
-  version = "2.0.911";
+  version = "2.0.914";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -24,7 +24,7 @@ buildPythonPackage rec {
     owner = "aws";
     repo = "amazon-redshift-python-driver";
     rev = "refs/tags/v${version}";
-    hash = "sha256-D1LpFGYEpGmkYCAJbYJaQStDnol90mH8X4S6iXg6Nfs=";
+    hash = "sha256-fGOo9FgVMI6ayyB3EMN6RGThwWciShcBZzWTZWtOt8E=";
   };
 
   # disable test coverage
diff --git a/pkgs/development/python-modules/reedsolo/default.nix b/pkgs/development/python-modules/reedsolo/default.nix
index 65006ea823ab..a2fb336f70b4 100644
--- a/pkgs/development/python-modules/reedsolo/default.nix
+++ b/pkgs/development/python-modules/reedsolo/default.nix
@@ -1,35 +1,40 @@
 { lib
 , buildPythonPackage
-, fetchpatch
 , fetchFromGitHub
+
+# build-system
 , cython
-, nose
+, setuptools
+
+# tests
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "reedsolo";
-  version = "1.5.4";
+  version = "1.7.0";
+  format = "pyproject";
 
   # Pypi does not have the tests
   src = fetchFromGitHub {
     owner = "tomerfiliba";
     repo = "reedsolomon";
-    rev = "v${version}";
-    hash = "sha256-GUMdL5HclXxqMYasq9kUE7fCqOkjr1D20wjd/E+xPBk=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-nzdD1oGXHSeGDD/3PpQQEZYGAwn9ahD2KNYGqpgADh0=";
   };
 
-  patches = [
-    (fetchpatch {
-      # python3.10 compat; https://github.com/tomerfiliba/reedsolomon/pull/38
-      url = "https://github.com/tomerfiliba/reedsolomon/commit/63e5bd9fc3ca503990c212eb2c77c10589e6d6c3.patch";
-      hash = "sha256-47g+jUsJEAyqGnlzRA1oSyc2XFPUOfH0EW+vcOJzsxI=";
-    })
+  nativeBuildInputs = [
+    cython
+    setuptools
   ];
 
-  nativeBuildInputs = [ cython ];
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
-  nativeCheckInputs = [ nose ];
-  checkPhase = "nosetests";
+  disabledTestPaths = [
+    "tests/test_creedsolo.py" # TODO: package creedsolo
+  ];
 
   meta = with lib; {
     description = "Pure-python universal errors-and-erasures Reed-Solomon Codec";
diff --git a/pkgs/development/python-modules/referencing/default.nix b/pkgs/development/python-modules/referencing/default.nix
index 37e418f3ea44..dc09aa3594a4 100644
--- a/pkgs/development/python-modules/referencing/default.nix
+++ b/pkgs/development/python-modules/referencing/default.nix
@@ -15,7 +15,7 @@
 let
   self = buildPythonPackage rec {
     pname = "referencing";
-    version = "0.30.0";
+    version = "0.30.2";
     format = "pyproject";
 
     disabled = pythonOlder "3.7";
@@ -25,7 +25,7 @@ let
       repo = "referencing";
       rev = "refs/tags/v${version}";
       fetchSubmodules = true;
-      hash = "sha256-nJSnZM3gg2+yfFAnOJzzXsmIEQdNf5ypt5R0O60NphA=";
+      hash = "sha256-C2gKjoaMcUWz/QOsqpv4TkozQyI+zEIQf3GMf5w40aw=";
     };
 
     SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/releases/default.nix b/pkgs/development/python-modules/releases/default.nix
index 9c1fc34cae46..05c6d5ae75d0 100644
--- a/pkgs/development/python-modules/releases/default.nix
+++ b/pkgs/development/python-modules/releases/default.nix
@@ -7,14 +7,14 @@
 
 buildPythonPackage rec {
   pname = "releases";
-  version = "1.6.3";
+  version = "2.1.1";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "bitprophet";
     repo = pname;
     rev = version;
-    hash = "sha256-XX2e6bjBNMun31h0sNJ9ieZE01U+PhA5JYYNOuMgD20=";
+    hash = "sha256-IgEKAUk97R3ZvqvexD/ptT8i0uf48K+DKkk4q3pn3G8=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/remarshal/default.nix b/pkgs/development/python-modules/remarshal/default.nix
index 5d2e002538c2..32916774ee36 100644
--- a/pkgs/development/python-modules/remarshal/default.nix
+++ b/pkgs/development/python-modules/remarshal/default.nix
@@ -18,14 +18,14 @@
 
 buildPythonPackage rec {
   pname = "remarshal";
-  version = "0.17.0";
+  version = "0.17.1";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "dbohdan";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-FytVq9p7Yo0lS5rHj0crPIpHFjxolW8esSPkj2wLfaI=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-2WxMh5P/8NvElymnMU3JzQU0P4DMXFF6j15OxLaS+VA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/reolink/default.nix b/pkgs/development/python-modules/reolink/default.nix
index 45105965cb6c..06143c2922f4 100644
--- a/pkgs/development/python-modules/reolink/default.nix
+++ b/pkgs/development/python-modules/reolink/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "reolink";
-  version = "0.64";
+  version = "0053";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
     owner = "fwestenberg";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-3r5BwVlNolji2HIGjqv8gkizx4wWxrKYkiNmSJedKmI=";
+    hash = "sha256-DZcTfmzO9rBhhRN2RkgoPwUPE+LPPeZgc8kmhYU9V2I=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/reportlab/default.nix b/pkgs/development/python-modules/reportlab/default.nix
index 608debea5693..664d87040c45 100644
--- a/pkgs/development/python-modules/reportlab/default.nix
+++ b/pkgs/development/python-modules/reportlab/default.nix
@@ -3,6 +3,7 @@
 , fetchPypi
 , freetype
 , pillow
+, setuptools
 , glibcLocales
 , python
 , isPyPy
@@ -12,26 +13,18 @@ let
   ft = freetype.overrideAttrs (oldArgs: { dontDisableStatic = true; });
 in buildPythonPackage rec {
   pname = "reportlab";
-  version = "3.6.13";
+  version = "4.0.4";
+  format = "pyproject";
+
+  # See https://bitbucket.org/pypy/compatibility/wiki/reportlab%20toolkit
+  disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-b3XTP3o3IM9HNxq2PO0PDr0a622xk4aukviXegm+lhE=";
+    hash = "sha256-f3CztWr/XxHLQTbFGg9aVv5uTI+7rHuQMHbbmajvMcE=";
   };
 
-  patches = [
-    ./darwin-m1-compat.patch
-  ];
-
-  nativeCheckInputs = [ glibcLocales ];
-
-  buildInputs = [ ft ];
-  propagatedBuildInputs = [ pillow ];
-
   postPatch = ''
-    substituteInPlace setup.py \
-      --replace "mif = findFile(d,'ft2build.h')" "mif = findFile('${lib.getDev ft}','ft2build.h')"
-
     # Remove all the test files that require access to the internet to pass.
     rm tests/test_lib_utils.py
     rm tests/test_platypus_general.py
@@ -42,16 +35,34 @@ in buildPythonPackage rec {
     rm tests/test_graphics_charts.py
   '';
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  buildInputs = [
+    ft
+  ];
+
+  propagatedBuildInputs = [
+    pillow
+  ];
+
+  nativeCheckInputs = [
+    glibcLocales
+  ];
+
   checkPhase = ''
-    cd tests
+    runHook preCheck
+    pushd tests
     LC_ALL="en_US.UTF-8" ${python.interpreter} runAll.py
+    popd
+    runHook postCheck
   '';
 
-  # See https://bitbucket.org/pypy/compatibility/wiki/reportlab%20toolkit
-  disabled = isPyPy;
-
-  meta = {
+  meta = with lib; {
     description = "An Open Source Python library for generating PDFs and graphics";
     homepage = "http://www.reportlab.com/";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ ];
   };
 }
diff --git a/pkgs/development/python-modules/reproject/default.nix b/pkgs/development/python-modules/reproject/default.nix
index 00060c08bc2e..81ab320c77f9 100644
--- a/pkgs/development/python-modules/reproject/default.nix
+++ b/pkgs/development/python-modules/reproject/default.nix
@@ -3,8 +3,11 @@
 , astropy-extension-helpers
 , astropy-healpix
 , buildPythonPackage
+, cloudpickle
 , cython
+, dask
 , fetchPypi
+, fsspec
 , numpy
 , oldest-supported-numpy
 , pytest-astropy
@@ -12,18 +15,19 @@
 , pythonOlder
 , scipy
 , setuptools-scm
+, zarr
 }:
 
 buildPythonPackage rec {
   pname = "reproject";
-  version = "0.10.0";
+  version = "0.12.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-OKxPPKcVVrEVUGR8Zaphn7ur9HOuqQKa9gnMo2RQQME=";
+    hash = "sha256-jb4efKT5jMY0ECV+ab5rpUHEk+tT4T2MioCRxs92TbI=";
   };
 
   postPatch = ''
@@ -42,9 +46,13 @@ buildPythonPackage rec {
   propagatedBuildInputs = [
     astropy
     astropy-healpix
+    cloudpickle
+    dask
+    fsspec
     numpy
     scipy
-  ];
+    zarr
+  ] ++ dask.optional-dependencies.array;
 
   nativeCheckInputs = [
     pytest-astropy
@@ -65,6 +73,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "Reproject astronomical images";
+    downloadPage = "https://github.com/astropy/reproject";
     homepage = "https://reproject.readthedocs.io";
     license = licenses.bsd3;
     maintainers = with maintainers; [ smaret ];
diff --git a/pkgs/development/python-modules/requests-cache/default.nix b/pkgs/development/python-modules/requests-cache/default.nix
index f85d2b2debe8..d04f25ae0e01 100644
--- a/pkgs/development/python-modules/requests-cache/default.nix
+++ b/pkgs/development/python-modules/requests-cache/default.nix
@@ -1,23 +1,28 @@
 { lib
-, appdirs
 , attrs
 , buildPythonPackage
 , bson
 , boto3
 , botocore
 , cattrs
-, exceptiongroup
 , fetchFromGitHub
 , itsdangerous
+, platformdirs
 , poetry-core
+, psutil
 , pymongo
 , pytestCheckHook
+, pytest-rerunfailures
+, pytest-xdist
 , pythonOlder
 , pyyaml
 , redis
 , requests
 , requests-mock
+, responses
 , rich
+, tenacity
+, time-machine
 , timeout-decorator
 , ujson
 , urllib3
@@ -26,7 +31,7 @@
 
 buildPythonPackage rec {
   pname = "requests-cache";
-  version = "0.9.8";
+  version = "1.1.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -35,7 +40,7 @@ buildPythonPackage rec {
     owner = "requests-cache";
     repo = "requests-cache";
     rev = "refs/tags/v${version}";
-    hash = "sha256-Xbzbwz80xY8IDPDhZEUhmmiCFJZvSQMQ6EmE4EL7QGo=";
+    hash = "sha256-kJqy7aK67JFtmsrwMtze/wTM9qch9YYj2eUzGJRJreQ=";
   };
 
   nativeBuildInputs = [
@@ -43,10 +48,9 @@ buildPythonPackage rec {
   ];
 
   propagatedBuildInputs = [
-    appdirs
     attrs
     cattrs
-    exceptiongroup
+    platformdirs
     requests
     urllib3
     url-normalize
@@ -78,9 +82,15 @@ buildPythonPackage rec {
   };
 
   nativeCheckInputs = [
+    psutil
     pytestCheckHook
+    pytest-rerunfailures
+    pytest-xdist
     requests-mock
+    responses
     rich
+    tenacity
+    time-machine
     timeout-decorator
   ]
   ++ passthru.optional-dependencies.json
@@ -98,6 +108,9 @@ buildPythonPackage rec {
   disabledTests = [
     # Tests are flaky in the sandbox
     "test_remove_expired_responses"
+    # Tests that broke with urllib 2.0.5
+    "test_request_only_if_cached__stale_if_error__expired"
+    "test_stale_if_error__error_code"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/requests-toolbelt/default.nix b/pkgs/development/python-modules/requests-toolbelt/default.nix
index d7b6f01d16c2..0d4bf487d7bf 100644
--- a/pkgs/development/python-modules/requests-toolbelt/default.nix
+++ b/pkgs/development/python-modules/requests-toolbelt/default.nix
@@ -29,6 +29,16 @@ buildPythonPackage rec {
     trustme
   ];
 
+  disabledTests = [
+    # incompatible with urllib3 2.0
+    "test_dump_response"
+    "test_dump_all"
+    "test_prepared_request_override_base"
+    "test_prepared_request_with_base"
+    "test_request_override_base"
+    "test_request_with_base"
+  ];
+
   pythonImportsCheck = [
     "requests_toolbelt"
   ];
diff --git a/pkgs/development/python-modules/rich/default.nix b/pkgs/development/python-modules/rich/default.nix
index 24a25e2756a5..86c3ac1ffeeb 100644
--- a/pkgs/development/python-modules/rich/default.nix
+++ b/pkgs/development/python-modules/rich/default.nix
@@ -18,7 +18,7 @@
 
 buildPythonPackage rec {
   pname = "rich";
-  version = "13.3.5";
+  version = "13.5.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     owner = "Textualize";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-PnyO5u0gxfYKT6xr0k3H0lbLl9wKPl6oxR1mM9A0Hys=";
+    hash = "sha256-ycDmFJa68OOrNqIy/hGKxbjoaIbiniiO4UAPNSyZvDk=";
   };
 
   nativeBuildInputs = [
@@ -46,6 +46,20 @@ buildPythonPackage rec {
     pytestCheckHook
   ];
 
+  disabledTests = [
+    # pygments 2.16 compat
+    # https://github.com/Textualize/rich/issues/3088
+    "test_card_render"
+    "test_markdown_render"
+    "test_markdown_render"
+    "test_python_render"
+    "test_python_render_simple"
+    "test_python_render_simple_passing_lexer_instance"
+    "test_python_render_indent_guides"
+    "test_option_no_wrap"
+    "test_syntax_highlight_ranges"
+  ];
+
   pythonImportsCheck = [
     "rich"
   ];
diff --git a/pkgs/development/python-modules/rkm-codes/default.nix b/pkgs/development/python-modules/rkm-codes/default.nix
index ca003ed90697..0a8869052d60 100644
--- a/pkgs/development/python-modules/rkm-codes/default.nix
+++ b/pkgs/development/python-modules/rkm-codes/default.nix
@@ -7,27 +7,27 @@
 
 buildPythonPackage rec {
   pname = "rkm-codes";
-  version = "0.5";
+  version = "0.6";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "KenKundert";
     repo = "rkm_codes";
-    rev = "v${version}";
-    hash = "sha256-r4F72iHxH7BoPtgYm1RD6BeSZszKRrpeBQccmT4wzuw=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-CkLLZuWcNL8sqAupc7lHXu0DXUXrX3qwd1g/ekyHdw4=";
   };
 
-  format = "pyproject";
   nativeBuildInputs = [
     flit-core
   ];
+
   propagatedBuildInputs = [
     setuptools
   ];
 
   # this has a circular dependency on quantiphy
   preBuild = ''
-    sed -i '/quantiphy/d' ./setup.py
-    sed -i '/pytest-runner/d' ./setup.py
+    sed -i '/quantiphy/d' pyproject.toml
   '';
 
   # this import check will fail as quantiphy is imported by this package
diff --git a/pkgs/development/python-modules/rlax/default.nix b/pkgs/development/python-modules/rlax/default.nix
index bb7044a89d44..6793cf747b5f 100644
--- a/pkgs/development/python-modules/rlax/default.nix
+++ b/pkgs/development/python-modules/rlax/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "rlax";
-  version = "0.1.5";
+  version = "0.1.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-GRqiGacyHZpVKUqfAteMjRV4EtdHkSgfFRj/H76bBVo=";
+    hash = "sha256-C3nFOv/zxvAoz6WZ0RAZffzEbxIx/XrGabO4QPxrik8=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/robotframework-databaselibrary/default.nix b/pkgs/development/python-modules/robotframework-databaselibrary/default.nix
index 8dfbb32fe08d..eea465ee8fb9 100644
--- a/pkgs/development/python-modules/robotframework-databaselibrary/default.nix
+++ b/pkgs/development/python-modules/robotframework-databaselibrary/default.nix
@@ -5,12 +5,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.2.4";
+  version = "1.3.1";
   pname = "robotframework-databaselibrary";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "627d872b3dda6a308a650ac9e676dadedf9c294e4ef70ad207cbb86b78eb8847";
+    sha256 = "sha256-C+shwpGbiA+YS8t9ApJEv6mYQVd3fVvY3qWzDF6vYqU=";
   };
 
   # unit tests are impure
diff --git a/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix b/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix
index fe33d2e3f6f4..114c24aa1c98 100644
--- a/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix
+++ b/pkgs/development/python-modules/robotframework-seleniumlibrary/default.nix
@@ -13,7 +13,7 @@
 }:
 
 buildPythonPackage rec {
-  version = "6.1.0";
+  version = "6.1.2";
   pname = "robotframework-seleniumlibrary";
 
   # no tests included in PyPI tarball
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner = "robotframework";
     repo = "SeleniumLibrary";
     rev = "refs/tags/v${version}";
-    sha256 = "sha256-iCZU+9xFUPoyucdQ/26dgxAm8jRf92P3JyA2KqV8bYI=";
+    sha256 = "sha256-QbAwPm1Y76KPIcHkopiyISULQSwUet021erFa/zi8Zw=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/robotsuite/default.nix b/pkgs/development/python-modules/robotsuite/default.nix
index 4fd25ec8067e..544beaf12072 100644
--- a/pkgs/development/python-modules/robotsuite/default.nix
+++ b/pkgs/development/python-modules/robotsuite/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "robotsuite";
-  version = "2.3.1";
+  version = "2.3.2";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-iugVKUPl6HTTO8K1EbSqAk1fl/fsEPoOcsOnnAgcEas=";
+    hash = "sha256-sPmOoR5K+gMfyPk2QMbiDNmWPRcqKrsz6ZPBAKR/3XY=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/rpds-py/default.nix b/pkgs/development/python-modules/rpds-py/default.nix
index 8b6eb61e72f6..6cd3f5dea28e 100644
--- a/pkgs/development/python-modules/rpds-py/default.nix
+++ b/pkgs/development/python-modules/rpds-py/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "rpds-py";
-  version = "0.9.2";
+  version = "0.10.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -20,13 +20,13 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "rpds_py";
     inherit version;
-    hash = "sha256-jXDo8UkA8mV8JJ6k3vljvthqKbgfgfW3a1qSFWgN6UU=";
+    hash = "sha256-/MHrt1YaPiSmWI98be0V2ArsIsZqBwx1dVm1exf/0cs=";
   };
 
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src;
     name = "${pname}-${version}";
-    hash = "sha256-2LiQ+beFj9+kykObPNtqcg+F+8wBDzvWcauwDLHa7Yo=";
+    hash = "sha256-iWy6BHVsKsZB0SVrh3CVhryaavk4gAQVvRdu9xBiDRg=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/rpy2/default.nix b/pkgs/development/python-modules/rpy2/default.nix
index 58e38eb56294..837d77b4dce2 100644
--- a/pkgs/development/python-modules/rpy2/default.nix
+++ b/pkgs/development/python-modules/rpy2/default.nix
@@ -24,13 +24,13 @@
 }:
 
 buildPythonPackage rec {
-    version = "3.5.12";
+    version = "3.5.14";
     pname = "rpy2";
 
     disabled = isPyPy;
     src = fetchPypi {
       inherit version pname;
-      hash = "sha256-7q33lP0qpUj4hWjGodJufDgQzUp2Soeyw7MdMZQtbUU=";
+      hash = "sha256-X0auMdNuEXvjZq1K4CSTwBWsa6WevjtM1yAAdTMvxIE=";
     };
 
     patches = [
@@ -81,6 +81,10 @@ buildPythonPackage rec {
 
     doCheck = !stdenv.isDarwin;
 
+    # newlines in environment variables are a problem due to
+    # https://github.com/rpy2/rpy2/issues/1066
+    preCheck = "unset postPatch";
+
     nativeCheckInputs = [
       pytestCheckHook
     ];
diff --git a/pkgs/development/python-modules/rtmixer/default.nix b/pkgs/development/python-modules/rtmixer/default.nix
index 1d9b8114df7b..361ba5e7fb56 100644
--- a/pkgs/development/python-modules/rtmixer/default.nix
+++ b/pkgs/development/python-modules/rtmixer/default.nix
@@ -11,14 +11,14 @@
 
 buildPythonPackage rec {
   pname = "rtmixer";
-  version = "0.1.1";
+  version = "0.1.4";
   disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "spatialaudio";
     repo = "python-rtmixer";
-    rev = version;
-    sha256 = "1bvgzzxiypvvb3qacbcry6761x9sk3dnx7jga7pli63f69vakg4y";
+    rev = "refs/tags/${version}";
+    sha256 = "sha256-S8aVfxoG0o5GarDX5ZIDQ3GKOT32NtttQJ449FI9Fy0=";
     fetchSubmodules = true;
   };
 
diff --git a/pkgs/development/python-modules/ruamel-yaml-clib/default.nix b/pkgs/development/python-modules/ruamel-yaml-clib/default.nix
index 7975629b4e12..a7a362bcf4ab 100644
--- a/pkgs/development/python-modules/ruamel-yaml-clib/default.nix
+++ b/pkgs/development/python-modules/ruamel-yaml-clib/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchhg
+, cython
 }:
 
 buildPythonPackage rec {
@@ -19,6 +20,11 @@ buildPythonPackage rec {
 
   # circular dependency with ruamel-yaml
   # pythonImportsCheck = [ "_ruamel_yaml" ];
+  nativeBuildInputs = [ cython ];
+
+  # Fix incompatible function pointer conversion errors with clang 16.
+  patches = [ ./fix-incompatible-function-pointers.patch ];
+  preBuild = "cython _ruamel_yaml.pyx -3 --module-name _ruamel_yaml -I.";
 
   meta = with lib; {
     description = "YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order";
diff --git a/pkgs/development/python-modules/ruamel-yaml-clib/fix-incompatible-function-pointers.patch b/pkgs/development/python-modules/ruamel-yaml-clib/fix-incompatible-function-pointers.patch
new file mode 100644
index 000000000000..99debf22e5ae
--- /dev/null
+++ b/pkgs/development/python-modules/ruamel-yaml-clib/fix-incompatible-function-pointers.patch
@@ -0,0 +1,79 @@
+Based on https://sourceforge.net/p/ruamel-yaml-clib/code/merge-requests/4/ with additions
+for `input_handler` and `output_handler`.
+
+--- a/_ruamel_yaml.pxd
++++ b/_ruamel_yaml.pxd
+@@ -2,15 +2,15 @@
+ cdef extern from "_ruamel_yaml.h":
+ 
+     void malloc(int l)
+-    void memcpy(char *d, char *s, int l)
++    void memcpy(unsigned char *d, char *s, int l)
+     int strlen(char *s)
+     int PyString_CheckExact(object o)
+     int PyUnicode_CheckExact(object o)
+     char *PyString_AS_STRING(object o)
+     int PyString_GET_SIZE(object o)
+-    object PyString_FromStringAndSize(char *v, int l)
++    object PyString_FromStringAndSize(unsigned char *v, size_t l)
+     object PyUnicode_FromString(char *u)
+-    object PyUnicode_DecodeUTF8(char *u, int s, char *e)
++    object PyUnicode_DecodeUTF8(unsigned char *u, size_t s, char *e)
+     object PyUnicode_AsUTF8String(object o)
+     int PY_MAJOR_VERSION
+ 
+@@ -85,11 +85,11 @@
+         YAML_MAPPING_START_EVENT
+         YAML_MAPPING_END_EVENT
+ 
+-    ctypedef int yaml_read_handler_t(void *data, char *buffer,
+-            int size, int *size_read) except 0
+-
+-    ctypedef int yaml_write_handler_t(void *data, char *buffer,
+-            int size) except 0
++    ctypedef int yaml_read_handler_t(void *data, unsigned char *buffer,
++            size_t size, size_t *size_read) except 0
++
++    ctypedef int yaml_write_handler_t(void *data, unsigned char *buffer,
++            size_t size) except 0
+ 
+     ctypedef struct yaml_mark_t:
+         int index
+@@ -112,7 +112,7 @@
+         char *handle
+         char *suffix
+     ctypedef struct _yaml_token_scalar_data_t:
+-        char *value
++        unsigned char *value
+         int length
+         yaml_scalar_style_t style
+     ctypedef struct _yaml_token_version_directive_data_t:
+@@ -151,7 +151,7 @@
+     ctypedef struct _yaml_event_scalar_data_t:
+         char *anchor
+         char *tag
+-        char *value
++        unsigned char *value
+         int length
+         int plain_implicit
+         int quoted_implicit
+--- a/_ruamel_yaml.pyx
++++ b/_ruamel_yaml.pyx
+@@ -904,7 +904,7 @@
+                 raise error
+         return 1
+
+-cdef int input_handler(void *data, char *buffer, int size, int *read) except 0:
++cdef int input_handler(void *data, unsigned char *buffer, size_t size, size_t *read) except 0:
+     cdef CParser parser
+     parser = <CParser>data
+     if parser.stream_cache is None:
+@@ -1514,7 +1514,7 @@
+             self.ascend_resolver()
+         return 1
+
+-cdef int output_handler(void *data, char *buffer, int size) except 0:
++cdef int output_handler(void *data, unsigned char *buffer, size_t size) except 0:
+     cdef CEmitter emitter
+     emitter = <CEmitter>data
+     if emitter.dump_unicode == 0:
diff --git a/pkgs/development/python-modules/s3transfer/default.nix b/pkgs/development/python-modules/s3transfer/default.nix
index a609bbe99b69..361764818605 100644
--- a/pkgs/development/python-modules/s3transfer/default.nix
+++ b/pkgs/development/python-modules/s3transfer/default.nix
@@ -9,16 +9,16 @@
 
 buildPythonPackage rec {
   pname = "s3transfer";
-  version = "0.6.1";
+  version = "0.6.2";
   format = "setuptools";
 
-  disabled = pythonOlder "3.6";
+  disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "boto";
     repo = pname;
     rev = version;
-    hash = "sha256-cL4IOfWLRUJC5zCzmN/qRf0N/IV/MDHF/j2JDX5hlUE=";
+    hash = "sha256-hoHNblnCSZteHmI5sJN72WrX7tveNFZqmL1jFKQmdag=";
   };
 
   propagatedBuildInputs = [ botocore ];
diff --git a/pkgs/development/python-modules/safetensors/default.nix b/pkgs/development/python-modules/safetensors/default.nix
index 06a2c3966a2d..976d6b9b3fa8 100644
--- a/pkgs/development/python-modules/safetensors/default.nix
+++ b/pkgs/development/python-modules/safetensors/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "safetensors";
-  version = "0.3.1";
+  version = "0.3.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -25,13 +25,13 @@ buildPythonPackage rec {
     owner = "huggingface";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-RoIBD+zBKVzXE8OpI8GR371YPxceR4P8B9T1/AHc9vA=";
+    hash = "sha256-U+indMoLFN6vMZkJTWFG08lsdXuK5gOfgaHmUVl6DPk=";
   };
 
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src;
     sourceRoot = "${src.name}/bindings/python";
-    hash = "sha256-tC0XawmKWNGCaByHQfJEfmHM3m/qgTuIpcRaEFJC6dM";
+    hash = "sha256-MhRs9tFCmVZI5O0EVRUbo4ZnUVRQ0EfQTU+E1K+qKZI=";
   };
 
   sourceRoot = "${src.name}/bindings/python";
diff --git a/pkgs/development/python-modules/sanic/default.nix b/pkgs/development/python-modules/sanic/default.nix
index b27b75e91b22..752802df209c 100644
--- a/pkgs/development/python-modules/sanic/default.nix
+++ b/pkgs/development/python-modules/sanic/default.nix
@@ -141,6 +141,10 @@ buildPythonPackage rec {
     "test_default_reload_shutdown_order"
     # App not found.
     "test_input_is_dir"
+    # HTTP 500 with Websocket subprotocols
+    "test_websocket_route_with_subprotocols"
+    # Socket closes early
+    "test_no_exceptions_when_cancel_pending_request"
   ];
 
   disabledTestPaths = [
diff --git a/pkgs/development/python-modules/scancode-toolkit/default.nix b/pkgs/development/python-modules/scancode-toolkit/default.nix
index 9c82820f8416..2affddbb6a4c 100644
--- a/pkgs/development/python-modules/scancode-toolkit/default.nix
+++ b/pkgs/development/python-modules/scancode-toolkit/default.nix
@@ -61,13 +61,13 @@
 
 buildPythonPackage rec {
   pname = "scancode-toolkit";
-  version = "31.2.6";
+  version = "32.0.6";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-VvhgXZpV58DHeY5+7nPbrbTTVuHkawFw5akbm4hPnBY=";
+    hash = "sha256-suqk7LOnZgSJGlaHq81LDOSCHZWdsJOUbma6MEpHxSM=";
   };
 
   dontConfigure = true;
diff --git a/pkgs/development/python-modules/scikit-bio/default.nix b/pkgs/development/python-modules/scikit-bio/default.nix
index 2c4920cf4c15..a1b355f1b832 100644
--- a/pkgs/development/python-modules/scikit-bio/default.nix
+++ b/pkgs/development/python-modules/scikit-bio/default.nix
@@ -20,13 +20,13 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.5.8";
+  version = "0.5.9";
   pname = "scikit-bio";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1VqDw+XyyhEydE4UCSM/th2a8MWpXet7KR5uNAcSuGs=";
+    hash = "sha256-euBE3IvuIxkAJIrcOoZZB352FA1WrJ9CvQH7eYEBSRA=";
   };
 
   nativeBuildInputs = [ cython ];
diff --git a/pkgs/development/python-modules/scikit-misc/default.nix b/pkgs/development/python-modules/scikit-misc/default.nix
index 2cb24d76b2b9..2a988049f447 100644
--- a/pkgs/development/python-modules/scikit-misc/default.nix
+++ b/pkgs/development/python-modules/scikit-misc/default.nix
@@ -14,13 +14,13 @@
 
 buildPythonPackage rec {
   pname = "scikit-misc";
-  version = "0.2.0";
+  version = "0.3.0";
   format = "pyproject";
 
   src = fetchPypi {
     pname = "scikit_misc";
     inherit version;
-    hash = "sha256-rBTdTpNeRC/DSrHFg7ZhHUYD0G9IgoqFx+A+LCxYK7w=";
+    hash = "sha256-mom0Ch+b3bViErh9ueVYiGfVz5SQUSqCCcGsBJ7+Nrg=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/scikit-rf/default.nix b/pkgs/development/python-modules/scikit-rf/default.nix
index 6940859b9f6a..130e56896e31 100644
--- a/pkgs/development/python-modules/scikit-rf/default.nix
+++ b/pkgs/development/python-modules/scikit-rf/default.nix
@@ -31,7 +31,7 @@
 
 buildPythonPackage rec {
   pname = "scikit-rf";
-  version = "0.28.0";
+  version = "0.29.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -40,7 +40,7 @@ buildPythonPackage rec {
     owner = "scikit-rf";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-cTvWNfIs2bAOYpXDg6ghZA4tRXlaNbUZwcaZMjCi/YY=";
+    hash = "sha256-rBOw1rIEF8Ia6xXlXxVzRRiUxrOjOAlipFuKiL+gRl0=";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/scikit-survival/default.nix b/pkgs/development/python-modules/scikit-survival/default.nix
index 7e2b8bf8bfd9..b2c4218e5f33 100644
--- a/pkgs/development/python-modules/scikit-survival/default.nix
+++ b/pkgs/development/python-modules/scikit-survival/default.nix
@@ -17,12 +17,12 @@
 
 buildPythonPackage rec {
   pname = "scikit-survival";
-  version = "0.20.0";
+  version = "0.21.0";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-24+8Sociq6u3KnoGSdV5Od5t/OT1uPkv19i3p5ezLjw=";
+    hash = "sha256-rcdEtlmD3O2BQuwxRlOJ/HOEBdWJBRJR5UR6rZoeArw=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/scipy/default.nix b/pkgs/development/python-modules/scipy/default.nix
index 7312e53ed413..2c5ecd42585c 100644
--- a/pkgs/development/python-modules/scipy/default.nix
+++ b/pkgs/development/python-modules/scipy/default.nix
@@ -32,8 +32,8 @@ let
   #     nix-shell maintainers/scripts/update.nix --argstr package python3.pkgs.scipy
   #
   # The update script uses sed regexes to replace them with the updated hashes.
-  version = "1.11.2";
-  srcHash = "sha256-7FE740/yKUXtujVX60fQB/xvCZFfV69FRihvSi6+UWo=";
+  version = "1.11.3";
+  srcHash = "sha256-swxRfFjTcKjKQv6GFdWNR6IKhdJQYhZSR7UWLtcnrXw=";
   datasetsHashes = {
     ascent = "1qjp35ncrniq9rhzb14icwwykqg2208hcssznn3hz27w39615kh3";
     ecg = "1bwbjp43b7znnwha5hv6wiz3g0bhwrpqpi75s12zidxrbwvd62pj";
@@ -79,8 +79,9 @@ in buildPythonPackage {
   # Relax deps a bit
   postPatch = ''
     substituteInPlace pyproject.toml \
+      --replace 'meson-python>=0.12.1,<0.14.0' 'meson-python' \
       --replace 'numpy==' 'numpy>=' \
-      --replace "pybind11>=2.10.4,<2.11.0" "pybind11>=2.10.4,<2.12.0" \
+      --replace "pybind11>=2.10.4,<2.11.1" "pybind11>=2.10.4,<2.12.0" \
       --replace 'wheel<0.41.0' 'wheel'
   '';
 
@@ -214,6 +215,7 @@ in buildPythonPackage {
 
   meta = with lib; {
     description = "SciPy (pronounced 'Sigh Pie') is open-source software for mathematics, science, and engineering";
+    downloadPage = "https://github.com/scipy/scipy";
     homepage = "https://www.scipy.org/";
     license = licenses.bsd3;
     maintainers = with maintainers; [ fridh doronbehar ];
diff --git a/pkgs/development/python-modules/seaborn/default.nix b/pkgs/development/python-modules/seaborn/default.nix
index 267b6065ed73..de5bbed11998 100644
--- a/pkgs/development/python-modules/seaborn/default.nix
+++ b/pkgs/development/python-modules/seaborn/default.nix
@@ -1,8 +1,7 @@
 { lib
 , stdenv
 , buildPythonPackage
-, fetchpatch
-, fetchPypi
+, fetchFromGitHub
 , flit-core
 , matplotlib
 , pytest-xdist
@@ -11,38 +10,23 @@
 , pandas
 , pythonOlder
 , scipy
+, statsmodels
 }:
 
 buildPythonPackage rec {
   pname = "seaborn";
-  version = "0.12.2";
+  version = "0.13.0rc0";
   format = "pyproject";
 
-  disabled = pythonOlder "3.6";
+  disabled = pythonOlder "3.8";
 
-  src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-N0ZF82UJ0NyriVy6W0fa8Fhvd7/js2yXxgfbfaW+ATk=";
+  src = fetchFromGitHub {
+    owner = "mwaskom";
+    repo = "seaborn";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-bNuTDXUjdOwqJN1U20eaeSa4/Q3Fe2XMqulqVmDLFEU=";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "fix-test-using-matplotlib-3.7.patch";
-      url = "https://github.com/mwaskom/seaborn/commit/db7ae11750fc2dfb695457239708448d54e9b8cd.patch";
-      hash = "sha256-LbieI0GeC/0NpFVxV/NRQweFjP/lj/TR2D/SLMPYqJg=";
-    })
-    (fetchpatch {
-      name = "fix-pandas-deprecation.patch";
-      url = "https://github.com/mwaskom/seaborn/commit/a48601d6bbf8381f9435be48624f1a77d6fbfced.patch";
-      hash = "sha256-LuN8jn6Jo9Fvdl5iGZ2LgINYujSDvvs+hSclnadV1F4=";
-    })
-    (fetchpatch {
-      name = "fix-tests-using-numpy-1.25.patch";
-      url = "https://github.com/mwaskom/seaborn/commit/b6737d5aec9a91bb8840cdda896a7970e1830d56.patch";
-      hash = "sha256-Xj82yyB5Vy2xKRl0ideDmJ5Zr4Xc+8cEHU/liVwMSvE=";
-    })
-  ];
-
   nativeBuildInputs = [
     flit-core
   ];
@@ -51,9 +35,15 @@ buildPythonPackage rec {
     matplotlib
     numpy
     pandas
-    scipy
   ];
 
+  passthru.optional-dependencies = {
+    stats = [
+      scipy
+      statsmodels
+    ];
+  };
+
   nativeCheckInputs = [
     pytest-xdist
     pytestCheckHook
@@ -62,10 +52,6 @@ buildPythonPackage rec {
   disabledTests = [
     # requires internet connection
     "test_load_dataset_string_error"
-
-    # per https://github.com/mwaskom/seaborn/issues/3431, we can enable this
-    # once matplotlib releases version > 3.7.2
-    "test_share_xy"
   ] ++ lib.optionals (!stdenv.hostPlatform.isx86) [
     # overly strict float tolerances
     "TestDendrogram"
@@ -82,6 +68,7 @@ buildPythonPackage rec {
   meta = with lib; {
     description = "Statistical data visualization";
     homepage = "https://seaborn.pydata.org/";
+    changelog = "https://github.com/mwaskom/seaborn/blob/master/doc/whatsnew/${src.rev}.rst";
     license = with licenses; [ bsd3 ];
     maintainers = with maintainers; [ fridh ];
   };
diff --git a/pkgs/development/python-modules/selenium/default.nix b/pkgs/development/python-modules/selenium/default.nix
index 053b42d90e9a..fdb052a47499 100644
--- a/pkgs/development/python-modules/selenium/default.nix
+++ b/pkgs/development/python-modules/selenium/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "selenium";
-  version = "4.8.0";
+  version = "4.12.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     repo = "selenium";
     # check if there is a newer tag with or without -python suffix
     rev = "refs/tags/selenium-${version}";
-    hash = "sha256-YTi6SNtTWuEPlQ3PTeis9osvtnWmZ7SRQbne9fefdco=";
+    hash = "sha256-A2lI40bPSIri/0yp6C3aJZBX5p6ON1fWGfJTcul9/2o=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/setuptools-rust/default.nix b/pkgs/development/python-modules/setuptools-rust/default.nix
index e71d8bc78dc0..e1c04780b8e8 100644
--- a/pkgs/development/python-modules/setuptools-rust/default.nix
+++ b/pkgs/development/python-modules/setuptools-rust/default.nix
@@ -6,25 +6,40 @@
 , semantic-version
 , setuptools
 , setuptools-scm
+, tomli
 , typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "setuptools-rust";
-  version = "1.6.0";
+  version = "1.7.0";
+  format = "pyproject";
+
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-yG5zTerDMFl5mL+8CNpFGH5rJ4N+I72R6tsyBzI5ImI=";
+    hash = "sha256-xxAJmZSCNaOK5+VV/hmapmwlPcOEsSX12FRzv4Hq46M=";
   };
 
-  nativeBuildInputs = [ setuptools-scm ];
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+  ];
+
+  propagatedBuildInputs = [
+    semantic-version
+    setuptools
+    typing-extensions
+  ] ++ lib.optionals (pythonOlder "3.11") [
+    tomli
+  ];
 
-  propagatedBuildInputs = [ semantic-version setuptools typing-extensions ];
+  pythonImportsCheck = [
+    "setuptools_rust"
+  ];
 
   doCheck = false;
-  pythonImportsCheck = [ "setuptools_rust" ];
 
   passthru.tests.pyo3 = callPackage ./pyo3-test { };
 
diff --git a/pkgs/development/python-modules/setuptools/default.nix b/pkgs/development/python-modules/setuptools/default.nix
index ad7638f3cb38..93912d4b4ad3 100644
--- a/pkgs/development/python-modules/setuptools/default.nix
+++ b/pkgs/development/python-modules/setuptools/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "setuptools";
-  version = "68.0.0";
+  version = "68.2.2";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "pypa";
     repo = "setuptools";
     rev = "refs/tags/v${version}";
-    hash = "sha256-Ew/DpI5XsYMB4kBfkFeeB5wv5cjx4oYTddZCWLgBHBs=";
+    hash = "sha256-PpZbITlYp/cA+8jmObw8g69TK+oE9YEXD3NNJixExB4=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/sh/default.nix b/pkgs/development/python-modules/sh/default.nix
index 20e4d95928ea..46332d0d528a 100644
--- a/pkgs/development/python-modules/sh/default.nix
+++ b/pkgs/development/python-modules/sh/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "sh";
-  version = "2.0.2";
+  version = "2.0.6";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "amoffat";
     repo = "sh";
     rev = "refs/tags/${version}";
-    hash = "sha256-qMYaGNEvv2z47IHFGqb64TRpN3JHycpEmhYhDjrUi6s=";
+    hash = "sha256-c4Ms4ydcW7LgmAI1WuYD74nzILuY/Xg+JePJe0q5AQQ=";
   };
 
   nativeBuildInputs = [
@@ -27,7 +27,7 @@ buildPythonPackage rec {
   ];
 
   pytestFlagsArray = [
-    "tests/test.py"
+    "tests"
   ];
 
   # A test needs the HOME directory to be different from $TMPDIR.
diff --git a/pkgs/development/python-modules/simple-salesforce/default.nix b/pkgs/development/python-modules/simple-salesforce/default.nix
index 8598f04918c3..5da242e7b4c3 100644
--- a/pkgs/development/python-modules/simple-salesforce/default.nix
+++ b/pkgs/development/python-modules/simple-salesforce/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "simple-salesforce";
-  version = "1.12.4";
+  version = "1.12.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-nYL2kSDS6DSrBzAKbg7Wj6boSZ52+T/yX+NYnYQ9rQo=";
+    hash = "sha256-mj7lbBGEybsEzWo4TYmPrN3mBXItdo/JomVIYmzIDAY=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/simple-websocket/default.nix b/pkgs/development/python-modules/simple-websocket/default.nix
index 475478826ea3..5af426fb5ba2 100644
--- a/pkgs/development/python-modules/simple-websocket/default.nix
+++ b/pkgs/development/python-modules/simple-websocket/default.nix
@@ -24,9 +24,12 @@ buildPythonPackage rec {
     wheel
   ];
 
+  propagatedBuildInputs = [
+    wsproto
+  ];
+
   nativeCheckInputs = [
     pytestCheckHook
-    wsproto
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/simpy/default.nix b/pkgs/development/python-modules/simpy/default.nix
index 2be43f157a16..e1544a0b89a6 100644
--- a/pkgs/development/python-modules/simpy/default.nix
+++ b/pkgs/development/python-modules/simpy/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "simpy";
-  version = "4.0.1";
+  version = "4.0.2";
   format = "setuptools";
 
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b36542e2faab612f861c5ef4da17220ac1553f5892b3583c67281dbe4faad404";
+    sha256 = "sha256-bYrcAinfawL7fibc0TOHA7T09j8WelrCpyE8uAq6RIQ=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/single-version/default.nix b/pkgs/development/python-modules/single-version/default.nix
index 53989afe94f8..558126bbbd71 100644
--- a/pkgs/development/python-modules/single-version/default.nix
+++ b/pkgs/development/python-modules/single-version/default.nix
@@ -8,25 +8,16 @@
 
 buildPythonPackage rec {
   pname = "single-version";
-  version = "1.5.1";
+  version = "1.6.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "hongquan";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-I8ATQzPRH9FVjqPoqrNjYMBU5azpmkLjRmHcz943C10=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-dUmJhNCPuq/7WGzFQXLjb8JrQgQn7qyBqzPWaKzD9hc=";
   };
 
-  patches = [
-    # https://github.com/hongquan/single-version/pull/4
-    (fetchpatch {
-      name = "use-poetry-core.patch";
-      url = "https://github.com/hongquan/single-version/commit/0cdf9795cb0522e90a8dc00306f1ff7bb85621ad.patch";
-      hash = "sha256-eT9G1XvkNF0+NKgx+yN7ei53xIEMvnc7V/KtPLqlWik=";
-    })
-  ];
-
   nativeBuildInputs = [ poetry-core ];
 
   nativeCheckInputs = [ pytestCheckHook ];
diff --git a/pkgs/development/python-modules/sip/default.nix b/pkgs/development/python-modules/sip/default.nix
index 5d6fde555d6f..f4870f2fa6f1 100644
--- a/pkgs/development/python-modules/sip/default.nix
+++ b/pkgs/development/python-modules/sip/default.nix
@@ -2,22 +2,24 @@
 , stdenv
 , buildPythonPackage
 , fetchPypi
+, pythonOlder
 , setuptools
 , wheel
 , packaging
 , ply
 , toml
+, tomli
 }:
 
 buildPythonPackage rec {
   pname = "sip";
-  version = "6.7.7";
+  version = "6.7.11";
 
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-3unAb6iubUQaQB+SKGf8YZbt2idO69n7/sVPB2nCqeI=";
+    hash = "sha256-8Nwyh6CxcuVmSTHIeEd1DUfk/c2k/jYrUUr47dZVtGk=";
   };
 
   nativeBuildInputs = [
@@ -25,7 +27,9 @@ buildPythonPackage rec {
     wheel
   ];
 
-  propagatedBuildInputs = [ packaging ply toml ];
+  propagatedBuildInputs = [ packaging ply toml ] ++ lib.optionals (pythonOlder "3.11") [
+    tomli
+  ];
 
   # There aren't tests
   doCheck = false;
diff --git a/pkgs/development/python-modules/skia-pathops/default.nix b/pkgs/development/python-modules/skia-pathops/default.nix
index 0fefc6d41f7c..d12726ec391c 100644
--- a/pkgs/development/python-modules/skia-pathops/default.nix
+++ b/pkgs/development/python-modules/skia-pathops/default.nix
@@ -16,13 +16,13 @@
 
 buildPythonPackage rec {
   pname = "skia-pathops";
-  version = "0.7.4";
+  version = "0.8.0.post1";
 
   src = fetchPypi {
     pname = "skia-pathops";
     inherit version;
     extension = "zip";
-    hash = "sha256-Ci/e6Ht62wGMv6bpXvnkKZ7WOwCAvidnejD/77ypE1A=";
+    hash = "sha256-oFYkneL2H6VRFrnuVVE8aja4eK7gDJFFDkBNFgZIXLs=";
   };
 
   postPatch = ''
@@ -36,6 +36,14 @@ buildPythonPackage rec {
       --replace "-mthumb" ""
     substituteInPlace src/cpp/skia-builder/skia/src/core/SkOpts.cpp \
       --replace "defined(SK_CPU_ARM64)" "0"
+  '' + lib.optionalString (stdenv.isDarwin && stdenv.isx86_64) /* old compiler? */ ''
+    patch -p1 <<EOF
+    --- a/src/cpp/skia-builder/skia/include/private/base/SkTArray.h
+    +++ b/src/cpp/skia-builder/skia/include/private/base/SkTArray.h
+    @@ -492 +492 @@:
+    -    static constexpr int kMaxCapacity = SkToInt(std::min(SIZE_MAX / sizeof(T), (size_t)INT_MAX));
+    +    static constexpr int kMaxCapacity = SkToInt(std::min<size_t>(SIZE_MAX / sizeof(T), (size_t)INT_MAX));
+    EOF
   '';
 
   nativeBuildInputs = [ cython ninja setuptools-scm ]
diff --git a/pkgs/development/python-modules/skrl/default.nix b/pkgs/development/python-modules/skrl/default.nix
index 266fb65bf213..20f43924b9d0 100644
--- a/pkgs/development/python-modules/skrl/default.nix
+++ b/pkgs/development/python-modules/skrl/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "skrl";
-  version = "0.10.2";
+  version = "1.0.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
@@ -24,7 +24,7 @@ buildPythonPackage rec {
     owner = "Toni-SM";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-OY5+bUPg+G1eKFMvHlXSHwc2WWHTpyoyCKjY3MvlLyM=";
+    hash = "sha256-89OoJanmaB74SLF1qMI8WFBdN1czS7Yr7BmojaRdo4M=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/smart-open/default.nix b/pkgs/development/python-modules/smart-open/default.nix
index 078101b1d6a2..df0cbdc8a01c 100644
--- a/pkgs/development/python-modules/smart-open/default.nix
+++ b/pkgs/development/python-modules/smart-open/default.nix
@@ -11,6 +11,7 @@
 , moto
 , paramiko
 , pytestCheckHook
+, responses
 }:
 
 buildPythonPackage rec {
@@ -27,27 +28,49 @@ buildPythonPackage rec {
     hash = "sha256-fciNaVw603FAcgrSrND+LEycJffmnFQij2ZpatYZ/e4=";
   };
 
-  propagatedBuildInputs = [
-    azure-common
-    azure-core
-    azure-storage-blob
-    boto3
-    google-cloud-storage
-    requests
+  passthru.optional-dependencies = {
+    s3 = [
+      boto3
+    ];
+    gcs = [
+      google-cloud-storage
+    ];
+    azure = [
+      azure-storage-blob
+      azure-common
+      azure-core
+    ];
+    http = [
+      requests
+    ];
+    webhdfs = [
+      requests
+    ];
+    ssh = [
+      paramiko
+    ];
+  };
+
+  pythonImportsCheck = [
+    "smart_open"
   ];
 
   nativeCheckInputs = [
     moto
-    paramiko
     pytestCheckHook
-  ];
+    responses
+  ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
 
   pytestFlagsArray = [
     "smart_open"
   ];
 
-  pythonImportsCheck = [
-    "smart_open"
+  disabledTests = [
+    # https://github.com/RaRe-Technologies/smart_open/issues/784
+    "test_https_seek_forward"
+    "test_seek_from_current"
+    "test_seek_from_end"
+    "test_seek_from_start"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/snitun/default.nix b/pkgs/development/python-modules/snitun/default.nix
index 35d7a877fed1..9701824a4df2 100644
--- a/pkgs/development/python-modules/snitun/default.nix
+++ b/pkgs/development/python-modules/snitun/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "snitun";
-  version = "0.36.1";
+  version = "0.36.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "NabuCasa";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-ViFAPAA6uU5MQNHCTIw0OTR8eZPgF34GqRP+py6L6RU=";
+    hash = "sha256-ViNsmTq1iLxNujA71b9JZB5AZ79ZbiqdTyDeBGd4gUA=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix b/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix
index 8f1f2cb95423..41f7c2e10c3d 100644
--- a/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix
+++ b/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "snowflake-sqlalchemy";
-  version = "1.4.6";
+  version = "1.5.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-xkx8QlabOCodqj4tRYxpln0z+HHVwYdqlXkaitzmKx8=";
+    hash = "sha256-PtD3fQnIqd79NcYFdDMlpNwhCY6PHGL/wDR/QnKdsFo=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/somajo/default.nix b/pkgs/development/python-modules/somajo/default.nix
index 98f98741a986..14530ec68aba 100644
--- a/pkgs/development/python-modules/somajo/default.nix
+++ b/pkgs/development/python-modules/somajo/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "somajo";
-  version = "2.2.4";
+  version = "2.3.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "tsproisl";
     repo = "SoMaJo";
     rev = "refs/tags/v${version}";
-    hash = "sha256-vO3wEM3WkPQqq+ureJY+cpRHQ4cOLPV6DukA5LOscEM=";
+    hash = "sha256-CNGSol77Q3uAZPLeV43NhIffO31tnZoMYOsevkZh3pc=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/soupsieve/default.nix b/pkgs/development/python-modules/soupsieve/default.nix
index e26a04192f48..1ae1cb7b8d2b 100644
--- a/pkgs/development/python-modules/soupsieve/default.nix
+++ b/pkgs/development/python-modules/soupsieve/default.nix
@@ -7,12 +7,12 @@
 
 buildPythonPackage rec {
   pname = "soupsieve";
-  version = "2.4";
+  version = "2.5";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-4o26nKbHwAFz405LpXRI8GiLtoG3xei/SXHar8CT1po=";
+    hash = "sha256-VmPVp7O/ru4LxDcuf8SPnP9JQLPuxUpkUcxSmfEJdpA=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/soxr/default.nix b/pkgs/development/python-modules/soxr/default.nix
index 20532f4c00fa..941b6e596a2f 100644
--- a/pkgs/development/python-modules/soxr/default.nix
+++ b/pkgs/development/python-modules/soxr/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "soxr";
-  version = "0.3.5";
+  version = "0.3.6";
   format = "pyproject";
 
   src = fetchFromGitHub {
@@ -27,7 +27,7 @@ buildPythonPackage rec {
     repo = "python-soxr";
     rev = "refs/tags/v${version}";
     fetchSubmodules = true;
-    hash = "sha256-q/K7XlqvDHAna+fqN6iiJ9wD8efsuwHiEfKjXS46jz8=";
+    hash = "sha256-H2sueQq32o/9EHENANKVoiWlFoSF88P0LZ7DfEh/Esg=";
   };
 
   env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/spacy-alignments/default.nix b/pkgs/development/python-modules/spacy-alignments/default.nix
index ff6e0eff1f04..9bcb74a242ff 100644
--- a/pkgs/development/python-modules/spacy-alignments/default.nix
+++ b/pkgs/development/python-modules/spacy-alignments/default.nix
@@ -2,7 +2,6 @@
 , stdenv
 , cargo
 , fetchPypi
-, fetchpatch
 , buildPythonPackage
 , isPy3k
 , rustPlatform
@@ -13,19 +12,19 @@
 
 buildPythonPackage rec {
   pname = "spacy-alignments";
-  version = "0.8.4";
+  version = "0.9.0";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1HApl/RZ0w5Tf2OPu1QBUa36uIqilp+dDbPjujn0e9s=";
+    hash = "sha256-jcNYghWR9Xbu97/hAYe8ewa5oMQ4ofNGFwY4cY7/EmM=";
   };
 
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src;
     name = "${pname}-${version}";
-    hash = "sha256-oFSruBnoodv6/0/OrmJ/2SVoWm3u3FGtzVJ9xgp0+Cg=";
+    hash = "sha256-I5uI+qFyb4/ArpUZi4yS/E/bmwoW7+CalMq02Gnm9S8=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/spacy-transformers/default.nix b/pkgs/development/python-modules/spacy-transformers/default.nix
index db50edc66aff..6a34745848d1 100644
--- a/pkgs/development/python-modules/spacy-transformers/default.nix
+++ b/pkgs/development/python-modules/spacy-transformers/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "spacy-transformers";
-  version = "1.2.5";
+  version = "1.3.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-+VIQXcffodzR6QEr2ZfvEIBGIxqKwsNZotI+Eh0EOIw=";
+    hash = "sha256-vxzDGLa+LoKnLpaqG7kGLfSLxqQdW+9AXw2YzBAz0UY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/spacy/default.nix b/pkgs/development/python-modules/spacy/default.nix
index a3cf5a63cf50..944fef7909c1 100644
--- a/pkgs/development/python-modules/spacy/default.nix
+++ b/pkgs/development/python-modules/spacy/default.nix
@@ -37,14 +37,14 @@
 
 buildPythonPackage rec {
   pname = "spacy";
-  version = "3.5.4";
+  version = "3.6.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-mpwWfp3Ov++sx12sNKjnK+y+NI60W78GpsBSOuBaxCU=";
+    hash = "sha256-YyOphwauLVVhaUsDqLC1dRiHoAKQOkiU5orrKcxnIWY=";
   };
 
   pythonRelaxDeps = [
@@ -81,7 +81,7 @@ buildPythonPackage rec {
     typing-extensions
   ];  postPatch = ''
     substituteInPlace setup.cfg \
-      --replace "typer>=0.3.0,<0.5.0" "typer>=0.3.0"
+      --replace "thinc>=8.1.8,<8.2.0" "thinc>=8.1.8"
   '';
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/spglib/default.nix b/pkgs/development/python-modules/spglib/default.nix
index 6bbff9e28f3a..95d73246aab9 100644
--- a/pkgs/development/python-modules/spglib/default.nix
+++ b/pkgs/development/python-modules/spglib/default.nix
@@ -1,25 +1,54 @@
-{ lib, buildPythonPackage, fetchPypi, numpy, pytest, pyyaml }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+
+# build-system
+, scikit-build-core
+, cmake
+, pathspec
+, ninja
+, pyproject-metadata
+
+# dependencies
+, numpy
+
+# tests
+, pytestCheckHook
+, pyyaml
+}:
 
 buildPythonPackage rec {
   pname = "spglib";
-  version = "2.0.2";
+  version = "2.1.0";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-HQgewi2kq0/DGY6URd2tbewiYcQ5J4MRUdk+OUImEKo=";
+    hash = "sha256-gUNUX9/8EfvNpNcFpra81Iid6bw1JLeN+GajbdDeCks=";
   };
 
-  propagatedBuildInputs = [ numpy ];
+  nativeBuildInputs = [
+    scikit-build-core
+    cmake
+    pathspec
+    ninja
+    pyproject-metadata
+  ];
+
+  dontUseCmakeConfigure = true;
 
-  nativeCheckInputs = [ pytest pyyaml ];
+  propagatedBuildInputs = [
+    numpy
+  ];
 
-  # pytestCheckHook doesn't work
-  # ImportError: cannot import name '_spglib' from partially initialized module 'spglib'
-  checkPhase = ''
-    pytest
-  '';
+  nativeCheckInputs = [
+    pytestCheckHook
+    pyyaml
+  ];
 
-  pythonImportsCheck = [ "spglib" ];
+  pythonImportsCheck = [
+    "spglib"
+  ];
 
   meta = with lib; {
     description = "Python bindings for C library for finding and handling crystal symmetries";
diff --git a/pkgs/development/python-modules/sphinx-autoapi/default.nix b/pkgs/development/python-modules/sphinx-autoapi/default.nix
index d8d98a803b8c..3d47f22c8726 100644
--- a/pkgs/development/python-modules/sphinx-autoapi/default.nix
+++ b/pkgs/development/python-modules/sphinx-autoapi/default.nix
@@ -1,41 +1,50 @@
 { lib
-, astroid
 , buildPythonPackage
 , fetchPypi
-, jinja2
-, mock
-, pytestCheckHook
 , pythonOlder
+
+# build-system
+, setuptools
+
+# dependencies
+, astroid
+, anyascii
+, jinja2
 , pyyaml
 , sphinx
-, stdenv
-, typing-extensions
-, unidecode
+
+# tests
+, beautifulsoup4
+, mock
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "sphinx-autoapi";
-  version = "2.0.1";
-  format = "setuptools";
+  version = "2.1.1";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-zfR5aMIIUvT+sMzv0J5BS7ggr4r4+C+rFaJLCaPRuro=";
+    hash = "sha256-+625bnkCDWsOxF2IhRe/gW1rWHotNA++HsMRNeMApsg=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
+    anyascii
     astroid
     jinja2
     pyyaml
     sphinx
-    unidecode
-  ] ++ lib.optionals (pythonOlder "3.11") [
-    typing-extensions
   ];
 
   nativeCheckInputs = [
+    beautifulsoup4
     mock
     pytestCheckHook
   ];
diff --git a/pkgs/development/python-modules/sphinx-autodoc-typehints/default.nix b/pkgs/development/python-modules/sphinx-autodoc-typehints/default.nix
index aca87f3c893c..d99577fd234e 100644
--- a/pkgs/development/python-modules/sphinx-autodoc-typehints/default.nix
+++ b/pkgs/development/python-modules/sphinx-autodoc-typehints/default.nix
@@ -10,7 +10,7 @@
 
 let
   pname = "sphinx-autodoc-typehints";
-  version = "1.23.0";
+  version = "1.24.0";
 in
 
 buildPythonPackage {
@@ -22,7 +22,7 @@ buildPythonPackage {
   src = fetchPypi {
     pname = "sphinx_autodoc_typehints";
     inherit version;
-    hash = "sha256-XUTimWYzza2kmbbSeklt3528ld0fDwn3s3lAJJ5h9uk=";
+    hash = "sha256-lORABmlBuyN3BLuIB4Xi0F6K5UBsiGdP7vu5OK0Nxq8=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/sphinx-automodapi/default.nix b/pkgs/development/python-modules/sphinx-automodapi/default.nix
index 7560b37036d3..3071d86dc46b 100644
--- a/pkgs/development/python-modules/sphinx-automodapi/default.nix
+++ b/pkgs/development/python-modules/sphinx-automodapi/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "sphinx-automodapi";
-  version = "0.14.1";
+  version = "0.16.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -20,8 +20,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "astropy";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-olD9LIyFCNEu287wQIRqoabfrdcdyZpNc69jq/e1304=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-7/b3PlgoqXyzmj4KDoHJf5gd3SUSiyhkpcDWl3u+0Bs=";
   };
 
   propagatedBuildInputs = [ sphinx ];
diff --git a/pkgs/development/python-modules/sphinx-comments/default.nix b/pkgs/development/python-modules/sphinx-comments/default.nix
index fc2e9517ce23..2ffed0c091fb 100644
--- a/pkgs/development/python-modules/sphinx-comments/default.nix
+++ b/pkgs/development/python-modules/sphinx-comments/default.nix
@@ -7,6 +7,7 @@
 buildPythonPackage rec {
   pname = "sphinx-comments";
   version = "0.0.3";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
diff --git a/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix b/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix
index 612717120f83..33e346638e9c 100644
--- a/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix
+++ b/pkgs/development/python-modules/sphinx-multitoc-numbering/default.nix
@@ -7,6 +7,7 @@
 buildPythonPackage rec {
   pname = "sphinx-multitoc-numbering";
   version = "0.1.3";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
diff --git a/pkgs/development/python-modules/sphinx-prompt/default.nix b/pkgs/development/python-modules/sphinx-prompt/default.nix
index cc5d5f0b2eca..776752d74c45 100644
--- a/pkgs/development/python-modules/sphinx-prompt/default.nix
+++ b/pkgs/development/python-modules/sphinx-prompt/default.nix
@@ -1,21 +1,33 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, sphinxHook
+, poetry-core
+, poetry-dynamic-versioning
 , sphinx
 }:
 
 buildPythonPackage rec {
   pname = "sphinx-prompt";
-  version = "1.5.0";
+  version = "1.7.0"; # read before updating past 1.7.0 https://github.com/sbrunner/sphinx-prompt/issues/398
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "sbrunner";
     repo = "sphinx-prompt";
-    rev = version;
-    hash = "sha256-ClUPAIyPrROJw4GXeakA8U443Vlhy3P/2vFnAtyrPHU=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-/XxUSsW8Bowks7P+d6iTlklyMIfTb2otXva/VtRVAkM=";
   };
 
+  postPatch = ''
+    substituteInPlace pyproject.toml \
+      --replace '"poetry-plugin-tweak-dependencies-version", ' ""
+  '';
+
+  nativeBuildInputs = [
+    poetry-core
+    poetry-dynamic-versioning
+  ];
+
   propagatedBuildInputs = [ sphinx ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/sphinx-pytest/default.nix b/pkgs/development/python-modules/sphinx-pytest/default.nix
index ecb2cbf55e77..a034b2b3f01d 100644
--- a/pkgs/development/python-modules/sphinx-pytest/default.nix
+++ b/pkgs/development/python-modules/sphinx-pytest/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "sphinx-pytest";
-  version = "0.0.3";
+  version = "0.1.1";
 
   src = fetchFromGitHub {
     owner = "chrisjsewell";
     repo = pname;
-    rev = "v${version}";
-    hash = "sha256-vRHPq6BAuhn5QvHG2BGen9v6ezA3RgFVtustsNxU+n8=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-26cV6mfNos/1YLhz5aVQVb54qsiyHWdcHtvmmSzMurk=";
   };
 
   format = "pyproject";
diff --git a/pkgs/development/python-modules/sphinx-rtd-theme/default.nix b/pkgs/development/python-modules/sphinx-rtd-theme/default.nix
index 613f19981216..fe056b3e70bc 100644
--- a/pkgs/development/python-modules/sphinx-rtd-theme/default.nix
+++ b/pkgs/development/python-modules/sphinx-rtd-theme/default.nix
@@ -11,13 +11,13 @@
 
 buildPythonPackage rec {
   pname = "sphinx-rtd-theme";
-  version = "1.2.0";
+  version = "1.3.0";
   format = "setuptools";
 
   src = fetchPypi {
     pname = "sphinx_rtd_theme";
     inherit version;
-    hash = "sha256-oNi9Gi7VLgszjL4ZxLLu88XnoEh2l1PaxqnwWce2Qbg=";
+    hash = "sha256-WQsDDHq7nPA47AU7leU4C1xw1hWR6wtVIGP758QfCTE=";
   };
 
   preBuild = ''
diff --git a/pkgs/development/python-modules/sphinx-tabs/default.nix b/pkgs/development/python-modules/sphinx-tabs/default.nix
index a2714c2d1260..1c43bcd6a661 100644
--- a/pkgs/development/python-modules/sphinx-tabs/default.nix
+++ b/pkgs/development/python-modules/sphinx-tabs/default.nix
@@ -1,7 +1,10 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, pythonImportsCheckHook
+
+# build-system
+, setuptools
+
 # documentation build dependencies
 , sphinxHook
 # runtime dependencies
@@ -16,6 +19,8 @@
 buildPythonPackage rec {
   pname = "sphinx-tabs";
   version = "3.4.1";
+  format = "pyproject";
+
   outputs = [ "out" "doc" ];
 
   src = fetchFromGitHub {
@@ -30,7 +35,7 @@ buildPythonPackage rec {
   '';
 
   nativeBuildInputs = [
-    pythonImportsCheckHook
+    setuptools
     sphinxHook
   ];
 
diff --git a/pkgs/development/python-modules/sphinx-thebe/default.nix b/pkgs/development/python-modules/sphinx-thebe/default.nix
index 1bf8685282ee..d2e05c755a25 100644
--- a/pkgs/development/python-modules/sphinx-thebe/default.nix
+++ b/pkgs/development/python-modules/sphinx-thebe/default.nix
@@ -8,7 +8,7 @@
 buildPythonPackage rec {
   pname = "sphinx-thebe";
   version = "0.2.1";
-  format = "setuptools";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
diff --git a/pkgs/development/python-modules/sphinx-togglebutton/default.nix b/pkgs/development/python-modules/sphinx-togglebutton/default.nix
index 391fb9205c95..3b3e146b98e8 100644
--- a/pkgs/development/python-modules/sphinx-togglebutton/default.nix
+++ b/pkgs/development/python-modules/sphinx-togglebutton/default.nix
@@ -1,23 +1,35 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, setuptools
 , wheel
-, sphinx
 , docutils
+, sphinx
 }:
 
 buildPythonPackage rec {
   pname = "sphinx-togglebutton";
   version = "0.3.2";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
     hash = "sha256-qwyLNmQnsB5MiYAtXQeEcsQn+m6dEtUhw0+gRCVZ3Ho=";
   };
 
-  propagatedBuildInputs = [ wheel sphinx docutils ];
+  nativeBuildInputs = [
+    setuptools
+    wheel
+  ];
+
+  propagatedBuildInputs = [
+    docutils
+    sphinx
+  ];
 
-  pythonImportsCheck = [ "sphinx_togglebutton" ];
+  pythonImportsCheck = [
+    "sphinx_togglebutton"
+  ];
 
   meta = with lib; {
     description = "Toggle page content and collapse admonitions in Sphinx";
diff --git a/pkgs/development/python-modules/sphinx-version-warning/default.nix b/pkgs/development/python-modules/sphinx-version-warning/default.nix
index 52a6a26124cd..1fb89f3a2849 100644
--- a/pkgs/development/python-modules/sphinx-version-warning/default.nix
+++ b/pkgs/development/python-modules/sphinx-version-warning/default.nix
@@ -15,9 +15,11 @@
 # Latest tagged release release "1.1.2" (Nov 2018) does not contain
 # documenation, it was added in commits Aug 10, 2019. Repository does not have
 # any activity since then.
-buildPythonPackage rec {
+buildPythonPackage {
   pname = "sphinx-version-warning";
   version = "unstable-2019-08-10";
+  format = "pyproject";
+
   outputs = [ "out" "doc" ];
 
   src = fetchFromGitHub {
diff --git a/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix b/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix
index 530803478614..ad89521a5b59 100644
--- a/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix
+++ b/pkgs/development/python-modules/sphinxcontrib-apidoc/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "sphinxcontrib-apidoc";
-  version = "0.3.0";
+  version = "0.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-cpv1ks97fdV8TAV5T3MtwCYScnXXhcKlSUUh/d53P7k=";
+    hash = "sha256-/lnRWIJHKqk8Jzevvepr7bNM41y9NKpJR5CfXfFQCq0=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/sphinxcontrib-bibtex/default.nix b/pkgs/development/python-modules/sphinxcontrib-bibtex/default.nix
index 4a0dcda23887..8c7cd9b966a9 100644
--- a/pkgs/development/python-modules/sphinxcontrib-bibtex/default.nix
+++ b/pkgs/development/python-modules/sphinxcontrib-bibtex/default.nix
@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "sphinxcontrib-bibtex";
-  version = "2.5.0";
+  version = "2.6.1";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-cbQuXbDi4oTyQ4dTJr+ZNqqadjKCJ311BIgm/vWwDqo=";
+    hash = "sha256-BGtJ8HCuUnavNMG43bm8lWLvbeL3pS03qRy45T9UuGM=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix b/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix
index 5830ff0caf57..111db7922b49 100644
--- a/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix
+++ b/pkgs/development/python-modules/sphinxcontrib-confluencebuilder/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, flit-core
 , docutils
 , sphinx
 , requests
@@ -9,13 +10,19 @@
 
 buildPythonPackage rec {
   pname = "sphinxcontrib-confluencebuilder";
-  version = "2.0.0";
+  version = "2.3.0";
+  format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    hash = "sha256-RyShQt/t8tnE5ZHM0WDQ+jrvXem3y24tCpj3s6Thq+g=";
+    pname = "sphinxcontrib_confluencebuilder";
+    inherit version;
+    hash = "sha256-Zpe2n131afnq4IhQEEZtquvSEkkjv/uznXt2tQhGfZA=";
   };
 
+  nativeBuildInputs = [
+    flit-core
+  ];
+
   propagatedBuildInputs = [
     docutils
     sphinx
diff --git a/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix b/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix
index 45027ba15c43..ad800984ee46 100644
--- a/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix
+++ b/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix
@@ -1,20 +1,30 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, flit-core
+, jinja2
 , sphinxcontrib-serializinghtml
-, six
 }:
 
 buildPythonPackage rec {
   pname = "sphinxcontrib-websupport";
-  version = "1.2.4";
+  version = "1.2.6";
+  format = "pyproject";
 
   src = fetchPypi {
-    inherit pname version;
-    sha256 = "4edf0223a0685a7c485ae5a156b6f529ba1ee481a1417817935b20bde1956232";
+    pname = "sphinxcontrib_websupport";
+    inherit version;
+    hash = "sha256-1ZK+jhEmG7vGRmjyWO/E/ULJOrYXQRFDtSRf4wxjPYw=";
   };
 
-  propagatedBuildInputs = [ six sphinxcontrib-serializinghtml ];
+  nativeBuildInputs = [
+    flit-core
+  ];
+
+  propagatedBuildInputs = [
+    jinja2
+    sphinxcontrib-serializinghtml
+  ];
 
   doCheck = false;
 
diff --git a/pkgs/development/python-modules/sphinxcontrib-youtube/default.nix b/pkgs/development/python-modules/sphinxcontrib-youtube/default.nix
index 795556797b93..67249bd88283 100644
--- a/pkgs/development/python-modules/sphinxcontrib-youtube/default.nix
+++ b/pkgs/development/python-modules/sphinxcontrib-youtube/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "sphinxcontrib-youtube";
-  version = "1.2.0";
+  version = "1.3.0";
   format = "pyproject";
 
   nativeBuildInputs = [ flit-core ];
@@ -16,8 +16,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "sphinx-contrib";
     repo = "youtube";
-    rev = "v${version}";
-    hash = "sha256-SUnnrzYJ6cOktE0IdnRWTvPGcL/eVS9obtHBMpS2s4A=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-/mu/OGMc+iP7DV36fmE8pb5y6MMOQ0fmzT8R7RP/tjM=";
   };
 
   propagatedBuildInputs = [ sphinx requests ];
diff --git a/pkgs/development/python-modules/sphinxemoji/default.nix b/pkgs/development/python-modules/sphinxemoji/default.nix
index 726ba8132b01..02abae52c4d1 100644
--- a/pkgs/development/python-modules/sphinxemoji/default.nix
+++ b/pkgs/development/python-modules/sphinxemoji/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, setuptools
 , sphinx
 , sphinxHook
 }:
@@ -8,6 +9,7 @@
 buildPythonPackage rec {
   pname = "sphinxemoji";
   version = "0.2.0";
+  format = "pyproject";
 
   outputs = [ "out" "doc" ];
 
@@ -18,14 +20,15 @@ buildPythonPackage rec {
     hash = "sha256-TLhjpJpUIoDAe3RZ/7sjTgdW+5s7OpMEd1/w0NyCQ3A=";
   };
 
-  propagatedBuildInputs = [
-    sphinx
-   ];
-
   nativeBuildInputs = [
+    setuptools
     sphinxHook
   ];
 
+  propagatedBuildInputs = [
+    sphinx
+   ];
+
   pythonImportsCheck = [
     "sphinxemoji"
   ];
diff --git a/pkgs/development/python-modules/sqlalchemy-utils/default.nix b/pkgs/development/python-modules/sqlalchemy-utils/default.nix
index d3ad0bf97038..84b42ad27f2f 100644
--- a/pkgs/development/python-modules/sqlalchemy-utils/default.nix
+++ b/pkgs/development/python-modules/sqlalchemy-utils/default.nix
@@ -37,13 +37,13 @@
 
 buildPythonPackage rec {
   pname = "sqlalchemy-utils";
-  version = "0.40.0";
+  version = "0.41.1";
   format = "setuptools";
 
   src = fetchPypi {
     inherit version;
     pname = "SQLAlchemy-Utils";
-    hash = "sha256-r4AwiaeSmAP662FzuQ8p0aZ60C8dHnMvQLBUqOs8c3A=";
+    hash = "sha256-ohgb/wHuuER544Vx0sBxjrUgQvmv2MGU0NAod+hLfXQ=";
   };
 
   patches = [
@@ -92,6 +92,7 @@ buildPythonPackage rec {
     "--deselect tests/functions/test_database.py::TestDatabasePostgresCreateDatabaseCloseConnection::test_create_database_twice"
     "--deselect tests/functions/test_database.py::TestDatabasePostgresPg8000::test_create_and_drop"
     "--deselect tests/functions/test_database.py::TestDatabasePostgresPsycoPG2CFFI::test_create_and_drop"
+    "--deselect tests/functions/test_database.py::TestDatabasePostgresPsycoPG3::test_create_and_drop"
   ];
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/sqlalchemy/default.nix b/pkgs/development/python-modules/sqlalchemy/default.nix
index 2f5f5d1a8e2c..95e357cabda9 100644
--- a/pkgs/development/python-modules/sqlalchemy/default.nix
+++ b/pkgs/development/python-modules/sqlalchemy/default.nix
@@ -40,7 +40,7 @@
 
 buildPythonPackage rec {
   pname = "SQLAlchemy";
-  version = "2.0.19";
+  version = "2.0.21";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -49,7 +49,7 @@ buildPythonPackage rec {
     owner = "sqlalchemy";
     repo = "sqlalchemy";
     rev = "refs/tags/rel_${lib.replaceStrings [ "." ] [ "_" ] version}";
-    hash = "sha256-97q04wQVtlV2b6VJHxvnQ9ep76T5umn1KI3hXh6a8kU=";
+    hash = "sha256-ldBn+pdZfqnBKdYkOcG47ScH/hBgeJBeIvn1hCIBw/A=";
   };
 
   nativeBuildInputs =[
diff --git a/pkgs/development/python-modules/stack-data/default.nix b/pkgs/development/python-modules/stack-data/default.nix
index e1649db165bc..cba83f5df09b 100644
--- a/pkgs/development/python-modules/stack-data/default.nix
+++ b/pkgs/development/python-modules/stack-data/default.nix
@@ -47,6 +47,10 @@ buildPythonPackage rec {
     typeguard
   ];
 
+  # https://github.com/alexmojaki/stack_data/issues/50
+  # incompatible with typeguard>=3
+  doCheck = false;
+
   disabledTests = [
     # AssertionError
     "test_example"
diff --git a/pkgs/development/python-modules/starlette/default.nix b/pkgs/development/python-modules/starlette/default.nix
index 1c08e61f6660..acac9c99f13a 100644
--- a/pkgs/development/python-modules/starlette/default.nix
+++ b/pkgs/development/python-modules/starlette/default.nix
@@ -22,7 +22,7 @@
 
 buildPythonPackage rec {
   pname = "starlette";
-  version = "0.27.0";
+  version = "0.31.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -31,18 +31,13 @@ buildPythonPackage rec {
     owner = "encode";
     repo = pname;
     rev = "refs/tags/${version}";
-    hash = "sha256-qT3ZJQY5l1K88llJdKoSkwHvfcWwjH6JysMnHYGknqw=";
+    hash = "sha256-Tq414cEpXX8MQDR0KYyB+J7lFqorbiwP/sGnUFvs7wA=";
   };
 
   nativeBuildInputs = [
     hatchling
   ];
 
-  postPatch = ''
-    # remove coverage arguments to pytest
-    sed -i '/--cov/d' setup.cfg
-  '';
-
   propagatedBuildInputs = [
     anyio
     itsdangerous
@@ -79,6 +74,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     changelog = "https://github.com/encode/starlette/releases/tag/${version}";
+    downloadPage = "https://github.com/encode/starlette";
     homepage = "https://www.starlette.io/";
     description = "The little ASGI framework that shines";
     license = licenses.bsd3;
diff --git a/pkgs/development/python-modules/steamship/default.nix b/pkgs/development/python-modules/steamship/default.nix
index e79b9993b883..5309312bba35 100644
--- a/pkgs/development/python-modules/steamship/default.nix
+++ b/pkgs/development/python-modules/steamship/default.nix
@@ -16,12 +16,12 @@
 
 buildPythonPackage rec {
   pname = "steamship";
-  version = "2.17.27";
+  version = "2.17.28";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Wgz0jkMaMUTM7ubb/TsGaQm8UbdPtEvzapl0h4xrqq0=";
+    hash = "sha256-NdWQiHu5YDIEtL4zJj5Vydjmwq1b5aqVcmqIe7zYv3g=";
   };
 
   pythonRelaxDeps = [
diff --git a/pkgs/development/python-modules/stravalib/default.nix b/pkgs/development/python-modules/stravalib/default.nix
index b05e147dcaa9..df64dbebab50 100644
--- a/pkgs/development/python-modules/stravalib/default.nix
+++ b/pkgs/development/python-modules/stravalib/default.nix
@@ -16,12 +16,12 @@
 
 buildPythonPackage rec {
   pname = "stravalib";
-  version = "1.2.0";
+  version = "1.5";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-P00oxUz0oVQB969c/N2wpKLe09wtvQWPH4DH4EZUaxc=";
+    hash = "sha256-OEdMRg3KjUrXt/CgJgsUqa/sVFAE0JONNZg5MBKtxmY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/strawberry-graphql/default.nix b/pkgs/development/python-modules/strawberry-graphql/default.nix
index 761a14fbfd03..93704c953ee8 100644
--- a/pkgs/development/python-modules/strawberry-graphql/default.nix
+++ b/pkgs/development/python-modules/strawberry-graphql/default.nix
@@ -42,7 +42,7 @@
 
 buildPythonPackage rec {
   pname = "strawberry-graphql";
-  version = "0.205.0";
+  version = "0.208.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -51,7 +51,7 @@ buildPythonPackage rec {
     owner = "strawberry-graphql";
     repo = "strawberry";
     rev = "refs/tags/${version}";
-    hash = "sha256-58pBsTQM3t5rj4AywhMqmCUzUQB4BH9FAF7J3p6Qkok=";
+    hash = "sha256-Gp58q1oZblbEQftEiq3il12eVIVF68jbGiqLdlolHvU=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/stripe/default.nix b/pkgs/development/python-modules/stripe/default.nix
index 9f1f11e1c18c..c70241afeb37 100644
--- a/pkgs/development/python-modules/stripe/default.nix
+++ b/pkgs/development/python-modules/stripe/default.nix
@@ -3,22 +3,24 @@
 , fetchPypi
 , requests
 , pythonOlder
+, typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "stripe";
-  version = "5.5.0";
+  version = "6.5.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-BKlzKzekYijs8OSWFjo+3ZNZaw5iAAKfvEiRFjhifhk=";
+    hash = "sha256-9fTHare5AfJjHvd3QdBpMg8zKMHjGRjax+20qgSssP0=";
   };
 
   propagatedBuildInputs = [
     requests
+    typing-extensions
   ];
 
   # Tests require network connectivity and there's no easy way to disable them
diff --git a/pkgs/development/python-modules/sunpy/default.nix b/pkgs/development/python-modules/sunpy/default.nix
index e81365767432..a676f28d2758 100644
--- a/pkgs/development/python-modules/sunpy/default.nix
+++ b/pkgs/development/python-modules/sunpy/default.nix
@@ -31,14 +31,14 @@
 
 buildPythonPackage rec {
   pname = "sunpy";
-  version = "4.1.3";
+  version = "5.0.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-YNShjuLC7gBRn11oAd5Kp5CfCn92vAo/K4QNIXm/Mtc=";
+    hash = "sha256-7tmyywyfQw1T9qr5UbPH/KR+AmmhSaHunkeUGRKDl+Q=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/sv-ttk/default.nix b/pkgs/development/python-modules/sv-ttk/default.nix
index 3032761032e2..660d32a6735c 100644
--- a/pkgs/development/python-modules/sv-ttk/default.nix
+++ b/pkgs/development/python-modules/sv-ttk/default.nix
@@ -6,7 +6,7 @@
 
 buildPythonPackage rec {
   pname = "sv-ttk";
-  version = "2.4.5";
+  version = "2.5.5";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -14,7 +14,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     inherit version;
     pname = "sv_ttk";
-    hash = "sha256-ysRhRxrml+wmluH8F5AE7vZYXrTNUg5ZzI+26jwpOpc=";
+    hash = "sha256-m7/iq6bMb5/fcNeTMQRlQ8lmb8zMeLrV/2SKmYfjzts=";
   };
 
   # No tests available
diff --git a/pkgs/development/python-modules/symengine/default.nix b/pkgs/development/python-modules/symengine/default.nix
index 60ae59584805..38ceda098209 100644
--- a/pkgs/development/python-modules/symengine/default.nix
+++ b/pkgs/development/python-modules/symengine/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "symengine";
-  version = "0.9.2";
+  version = "0.10.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "symengine";
     repo = "symengine.py";
-    rev = "v${version}";
-    hash = "sha256-ZHplYEG97foy/unOdSokFFkDl4LK5TI4kypHSLpcCM4=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-03lHip0iExfptrUe5ObA6xXrsfS4QJPrh1Z0v7q2lDI=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/tableauserverclient/default.nix b/pkgs/development/python-modules/tableauserverclient/default.nix
index 601fdee70310..c473a3755fe0 100644
--- a/pkgs/development/python-modules/tableauserverclient/default.nix
+++ b/pkgs/development/python-modules/tableauserverclient/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "tableauserverclient";
-  version = "0.25";
+  version = "0.26";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-01TRYkXEWagFrSB7zvP6Bj4YvIFoaVkgrIm/gSWkILY=";
+    sha256 = "sha256-vn7A7n0Z4kTtrm8MEoUJiv94K3qA/4Kx8lElhDM/LlI=";
   };
 
   propagatedBuildInputs = [ defusedxml requests packaging ];
diff --git a/pkgs/development/python-modules/tables/default.nix b/pkgs/development/python-modules/tables/default.nix
index 8705f64817e8..c1726ee97a85 100644
--- a/pkgs/development/python-modules/tables/default.nix
+++ b/pkgs/development/python-modules/tables/default.nix
@@ -36,6 +36,12 @@ buildPythonPackage rec {
       url = "https://github.com/PyTables/PyTables/commit/337792561e5924124efd20d6fea6bbbd2428b2aa.patch";
       hash = "sha256-pz3A/jTPWXXlzr+Yl5PRUvdSAinebFsoExfek4RUHkc=";
     })
+    (fetchpatch {
+      name = "numexpr-2.8.5-compatibility.patch";
+      url = "https://github.com/PyTables/PyTables/commit/1a235490ebe1a138da1139cfa19829b5f0a2af37.patch";
+      includes = [ "tables/tests/test_queries.py" ];
+      hash = "sha256-uMS+Z2Zcz68ILMQaBdIDMnCyasozCaCGOiGIyw0+Evc=";
+    })
   ];
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/tabula-py/default.nix b/pkgs/development/python-modules/tabula-py/default.nix
index 585cf7205e1f..b985ebf8d893 100644
--- a/pkgs/development/python-modules/tabula-py/default.nix
+++ b/pkgs/development/python-modules/tabula-py/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "tabula-py";
-  version = "2.7.0";
+  version = "2.8.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "chezou";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-SV4QLvk7dXtU0/husS5A5mBYvbTejLyO9PpiO2oBtjs=";
+    hash = "sha256-QqTfbSwGaNRXBiAzB1fsEawxCvlIunB1j2jSFD9imPI=";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/tblib/default.nix b/pkgs/development/python-modules/tblib/default.nix
index 2f06b665d33f..0441fb2894fd 100644
--- a/pkgs/development/python-modules/tblib/default.nix
+++ b/pkgs/development/python-modules/tblib/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "tblib";
-  version = "1.7.0";
+  version = "2.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "059bd77306ea7b419d4f76016aef6d7027cc8a0785579b5aad198803435f882c";
+    sha256 = "sha256-pt8w8nLAi/i+ZuB3X62GIAXZUKa4RJuU98eIcx1w7Nc=";
   };
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/tenacity/default.nix b/pkgs/development/python-modules/tenacity/default.nix
index 91017b840359..5fe70090feea 100644
--- a/pkgs/development/python-modules/tenacity/default.nix
+++ b/pkgs/development/python-modules/tenacity/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "tenacity";
-  version = "8.2.2";
+  version = "8.2.3";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Q68DeCK9ACkCWHfzstl8xNe7DCmRAAo9WdcVF8XJaeA=";
+    hash = "sha256-U5jvDXjmP0AAfB+0wL/5bhkROU0vqNGU93YZwF/2zIo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/tensorboard-data-server/default.nix b/pkgs/development/python-modules/tensorboard-data-server/default.nix
index d6df4fc0b241..5ff48c7cc3d1 100644
--- a/pkgs/development/python-modules/tensorboard-data-server/default.nix
+++ b/pkgs/development/python-modules/tensorboard-data-server/default.nix
@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "tensorboard-data-server";
-  version = "0.6.1";
+  version = "0.7.1";
   format = "wheel";
   disabled = pythonOlder "3.6";
 
@@ -11,7 +11,7 @@ buildPythonPackage rec {
     inherit version format;
     dist = "py3";
     python = "py3";
-    hash = "sha256-gJ/piHaC01wffR9U8PQPmLsfdxsUJltFPKBR4s5Y/Kc=";
+    hash = "sha256-mTi9OfUEF5ezOSEGb7oOqwOg3RDRiHoF5irliEGtTD8=";
   };
 
   pythonImportsCheck = [ "tensorboard_data_server" ];
diff --git a/pkgs/development/python-modules/tensorboard/default.nix b/pkgs/development/python-modules/tensorboard/default.nix
index c49fcad07531..73c76d74771c 100644
--- a/pkgs/development/python-modules/tensorboard/default.nix
+++ b/pkgs/development/python-modules/tensorboard/default.nix
@@ -23,7 +23,7 @@
 
 buildPythonPackage rec {
   pname = "tensorboard";
-  version = "2.11.0";
+  version = "2.14.0";
   format = "wheel";
   disabled = pythonOlder "3.6";
 
@@ -31,7 +31,7 @@ buildPythonPackage rec {
     inherit pname version format;
     dist = "py3";
     python = "py3";
-    hash = "sha256-oOWS7oeWLhevPw3Of6rj+70jkDAVnp5iXM6BC341xT0=";
+    hash = "sha256-Nmf5dF2ZKAg2rWcwIjYshA9g7Y/v1aPjC/Bx9aj9ABc=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/termcolor/default.nix b/pkgs/development/python-modules/termcolor/default.nix
index ba5244f66af3..0d40a1b44f96 100644
--- a/pkgs/development/python-modules/termcolor/default.nix
+++ b/pkgs/development/python-modules/termcolor/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "termcolor";
-  version = "2.2.0";
+  version = "2.3.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-38isPzUHiPI7KUez5s+lpTtjC2EubNiWWgFad2AguZo=";
+    hash = "sha256-tbCPaJN/E4/pL2wIm5nx4toK5WxSt4v3B1/ZVCD9mlo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/testfixtures/default.nix b/pkgs/development/python-modules/testfixtures/default.nix
index 4ccc1251a8fb..64b49efbd1de 100644
--- a/pkgs/development/python-modules/testfixtures/default.nix
+++ b/pkgs/development/python-modules/testfixtures/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "testfixtures";
-  version = "7.1.0";
+  version = "7.2.0";
   format = "setuptools";
   # DO NOT CONTACT upstream.
   # https://github.com/simplistix/ is only concerned with internal CI process.
@@ -25,7 +25,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-RWzk85MWDyfNaEClNw7PSnDxchc39eZ6KveebIF4BKQ=";
+    hash = "sha256-jIwg3TDqETVIUHWEodqud5JI26pXEmcseruXCfD7+LI=";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/testtools/default.nix b/pkgs/development/python-modules/testtools/default.nix
index e0780dd768cb..c4f74d377d5f 100644
--- a/pkgs/development/python-modules/testtools/default.nix
+++ b/pkgs/development/python-modules/testtools/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "testtools";
-  version = "2.5.0";
+  version = "2.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "57c13433d94f9ffde3be6534177d10fb0c1507cc499319128958ca91a65cb23f";
+    sha256 = "sha256-KLZeFMDy0+y7+19VydzeXk+qgKwWo3qCOQmh/jy8swo=";
   };
 
   propagatedBuildInputs = [ pbr python-mimeparse extras ];
diff --git a/pkgs/development/python-modules/textacy/default.nix b/pkgs/development/python-modules/textacy/default.nix
index 2986f3428eb1..80c40f7d5514 100644
--- a/pkgs/development/python-modules/textacy/default.nix
+++ b/pkgs/development/python-modules/textacy/default.nix
@@ -21,13 +21,13 @@
 
 buildPythonPackage rec {
   pname = "textacy";
-  version = "0.12.0";
+  version = "0.13.0";
   disabled = pythonOlder "3.7";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2c92bdd6b47305447b64e4cb6cc43c11675f021f910a8074bc8149dbf5325e5b";
+    sha256 = "sha256-a+AkSMCPx9fE7fhSiQBuOaSlPvdHIB/yS2dcZS9AxoY=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/tf2onnx/default.nix b/pkgs/development/python-modules/tf2onnx/default.nix
index b1fe7abfae25..f1359e6fdaac 100644
--- a/pkgs/development/python-modules/tf2onnx/default.nix
+++ b/pkgs/development/python-modules/tf2onnx/default.nix
@@ -24,14 +24,14 @@
 
 buildPythonPackage rec {
   pname = "tf2onnx";
-  version = "1.14.0";
+  version = "1.15.1";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "onnx";
     repo = "tensorflow-onnx";
-    rev = "v${version}";
-    hash = "sha256-JpXwf+GLjn0krsb5KnEhVuemWa0V2+wF10neDsdtOfI=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-HqzcoPPX9+NOj0uFfOSVI2MNCkxq1NmLqXflwdi5RF0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/thefuzz/default.nix b/pkgs/development/python-modules/thefuzz/default.nix
index 2748381f7dc2..8d240fe19e3e 100644
--- a/pkgs/development/python-modules/thefuzz/default.nix
+++ b/pkgs/development/python-modules/thefuzz/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "thefuzz";
-  version = "0.19.0";
+  version = "0.20.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-b3Em2y8silQhKwXjp0DkX0KRxJfXXSB1Fyj2Nbt0qj0=";
+    hash = "sha256-ol5JeGscRgPH/G4taea8ZgmCopGWmLU2/4NU4GMcxA0=";
   };
 
   propagatedBuildInputs = [ levenshtein ];
diff --git a/pkgs/development/python-modules/thinc/default.nix b/pkgs/development/python-modules/thinc/default.nix
index a712f0078b9a..18f8623f4539 100644
--- a/pkgs/development/python-modules/thinc/default.nix
+++ b/pkgs/development/python-modules/thinc/default.nix
@@ -21,6 +21,7 @@
 , pytestCheckHook
 , python
 , pythonOlder
+, setuptools
 , srsly
 , tqdm
 , typing-extensions
@@ -29,16 +30,25 @@
 
 buildPythonPackage rec {
   pname = "thinc";
-  version = "8.1.10";
+  version = "8.2.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-bEpI19oH4EToSmjLubIvMvhJCZWiurC/xg5BLRSvuZE=";
+    hash = "sha256-gsoeeDHjVNdMZ3bth9vXP0qtWe0ljIdGy+hoaIGG/Ek=";
   };
 
+  postPatch = ''
+    substituteInPlace setup.cfg \
+      --replace "preshed>=3.0.2,<3.1.0" "preshed"
+  '';
+
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   buildInputs = [
     cython
   ] ++ lib.optionals stdenv.isDarwin [
diff --git a/pkgs/development/python-modules/tifffile/default.nix b/pkgs/development/python-modules/tifffile/default.nix
index b1102c44e95d..1b9582a71c8b 100644
--- a/pkgs/development/python-modules/tifffile/default.nix
+++ b/pkgs/development/python-modules/tifffile/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "tifffile";
-  version = "2023.7.18";
+  version = "2023.8.30";
   format = "setuptools";
 
   disabled = pythonOlder "3.9";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-WlpiSy96t/N+nsQXSuLfGAW5ZY+JAT+bS1VQZy9l8qE=";
+    hash = "sha256-aoxTsBKihrddCaFJirMvIC8kzGJwoQW11ZEdxEJvFio=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/tiktoken/Cargo.lock b/pkgs/development/python-modules/tiktoken/Cargo.lock
index 1d992854518e..e65fd819d3d4 100644
--- a/pkgs/development/python-modules/tiktoken/Cargo.lock
+++ b/pkgs/development/python-modules/tiktoken/Cargo.lock
@@ -4,9 +4,9 @@ version = 3
 
 [[package]]
 name = "aho-corasick"
-version = "0.7.20"
+version = "1.0.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cc936419f96fa211c1b9166887b38e5e40b19958e5b895be7c1f93adec7071ac"
+checksum = "0c378d78423fdad8089616f827526ee33c19f2fddbd5de1629152c9593ba4783"
 dependencies = [
  "memchr",
 ]
@@ -40,12 +40,11 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
 
 [[package]]
 name = "bstr"
-version = "1.4.0"
+version = "1.6.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c3d4260bcc2e8fc9df1eac4919a720effeb63a3f0952f5bf4944adfa18897f09"
+checksum = "4c2f7349907b712260e64b0afe2f84692af14a454be26187d9df565c7f69266a"
 dependencies = [
  "memchr",
- "once_cell",
  "regex-automata",
  "serde",
 ]
@@ -58,9 +57,9 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
 
 [[package]]
 name = "fancy-regex"
-version = "0.10.0"
+version = "0.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0678ab2d46fa5195aaf59ad034c083d351377d4af57f3e073c074d0da3e3c766"
+checksum = "b95f7c0680e4142284cf8b22c14a476e87d61b004a3a0861872b32ef7ead40a2"
 dependencies = [
  "bit-set",
  "regex",
@@ -74,15 +73,15 @@ checksum = "bfa799dd5ed20a7e349f3b4639aa80d74549c81716d9ec4f994c9b5815598306"
 
 [[package]]
 name = "libc"
-version = "0.2.140"
+version = "0.2.148"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "99227334921fae1a979cf0bfdfcc6b3e5ce376ef57e16fb6fb3ea2ed6095f80c"
+checksum = "9cdc71e17332e86d2e1d38c1f99edcb6288ee11b815fb1a4b049eaa2114d369b"
 
 [[package]]
 name = "lock_api"
-version = "0.4.9"
+version = "0.4.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "435011366fe56583b16cf956f9df0095b405b82d76425bc8981c0e22e60ec4df"
+checksum = "c1cc9717a20b1bb222f333e6a92fd32f7d8a18ddc5a3191a11af45dcbf4dcd16"
 dependencies = [
  "autocfg",
  "scopeguard",
@@ -90,24 +89,24 @@ dependencies = [
 
 [[package]]
 name = "memchr"
-version = "2.5.0"
+version = "2.6.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d"
+checksum = "8f232d6ef707e1956a43342693d2a31e72989554d58299d7a88738cc95b0d35c"
 
 [[package]]
 name = "memoffset"
-version = "0.6.5"
+version = "0.9.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5aa361d4faea93603064a027415f07bd8e1d5c88c9fbf68bf56a285428fd79ce"
+checksum = "5a634b1c61a95585bd15607c6ab0c4e5b226e695ff2800ba0cdccddf208c406c"
 dependencies = [
  "autocfg",
 ]
 
 [[package]]
 name = "once_cell"
-version = "1.17.1"
+version = "1.18.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3"
+checksum = "dd8b5dd2ae5ed71462c540258bedcb51965123ad7e7ccf4b9a8cafaa4a63576d"
 
 [[package]]
 name = "parking_lot"
@@ -121,31 +120,31 @@ dependencies = [
 
 [[package]]
 name = "parking_lot_core"
-version = "0.9.7"
+version = "0.9.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9069cbb9f99e3a5083476ccb29ceb1de18b9118cafa53e90c9551235de2b9521"
+checksum = "93f00c865fe7cabf650081affecd3871070f26767e7b2070a3ffae14c654b447"
 dependencies = [
  "cfg-if",
  "libc",
  "redox_syscall",
  "smallvec",
- "windows-sys",
+ "windows-targets",
 ]
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.54"
+version = "1.0.67"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e472a104799c74b514a57226160104aa483546de37e839ec50e3c2e41dd87534"
+checksum = "3d433d9f1a3e8c1263d9456598b16fec66f4acc9a74dacffd35c7bb09b3a1328"
 dependencies = [
  "unicode-ident",
 ]
 
 [[package]]
 name = "pyo3"
-version = "0.17.3"
+version = "0.19.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "268be0c73583c183f2b14052337465768c07726936a260f480f0857cb95ba543"
+checksum = "e681a6cfdc4adcc93b4d3cf993749a4552018ee0a9b65fc0ccfad74352c72a38"
 dependencies = [
  "cfg-if",
  "indoc",
@@ -160,9 +159,9 @@ dependencies = [
 
 [[package]]
 name = "pyo3-build-config"
-version = "0.17.3"
+version = "0.19.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "28fcd1e73f06ec85bf3280c48c67e731d8290ad3d730f8be9dc07946923005c8"
+checksum = "076c73d0bc438f7a4ef6fdd0c3bb4732149136abd952b110ac93e4edb13a6ba5"
 dependencies = [
  "once_cell",
  "target-lexicon",
@@ -170,9 +169,9 @@ dependencies = [
 
 [[package]]
 name = "pyo3-ffi"
-version = "0.17.3"
+version = "0.19.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0f6cb136e222e49115b3c51c32792886defbfb0adead26a688142b346a0b9ffc"
+checksum = "e53cee42e77ebe256066ba8aa77eff722b3bb91f3419177cf4cd0f304d3284d9"
 dependencies = [
  "libc",
  "pyo3-build-config",
@@ -180,67 +179,73 @@ dependencies = [
 
 [[package]]
 name = "pyo3-macros"
-version = "0.17.3"
+version = "0.19.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "94144a1266e236b1c932682136dc35a9dee8d3589728f68130c7c3861ef96b28"
+checksum = "dfeb4c99597e136528c6dd7d5e3de5434d1ceaf487436a3f03b2d56b6fc9efd1"
 dependencies = [
  "proc-macro2",
  "pyo3-macros-backend",
  "quote",
- "syn",
+ "syn 1.0.109",
 ]
 
 [[package]]
 name = "pyo3-macros-backend"
-version = "0.17.3"
+version = "0.19.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c8df9be978a2d2f0cdebabb03206ed73b11314701a5bfe71b0d753b81997777f"
+checksum = "947dc12175c254889edc0c02e399476c2f652b4b9ebd123aa655c224de259536"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn",
+ "syn 1.0.109",
 ]
 
 [[package]]
 name = "quote"
-version = "1.0.26"
+version = "1.0.33"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4424af4bf778aae2051a77b60283332f386554255d722233d09fbfc7e30da2fc"
+checksum = "5267fca4496028628a95160fc423a33e8b2e6af8a5302579e322e4b520293cae"
 dependencies = [
  "proc-macro2",
 ]
 
 [[package]]
 name = "redox_syscall"
-version = "0.2.16"
+version = "0.3.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fb5a58c1855b4b6819d59012155603f0b22ad30cad752600aadfcb695265519a"
+checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29"
 dependencies = [
  "bitflags",
 ]
 
 [[package]]
 name = "regex"
-version = "1.7.3"
+version = "1.9.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b1f693b24f6ac912f4893ef08244d70b6067480d2f1a46e950c9691e6749d1d"
+checksum = "697061221ea1b4a94a624f67d0ae2bfe4e22b8a17b6a192afb11046542cc8c47"
 dependencies = [
  "aho-corasick",
  "memchr",
+ "regex-automata",
  "regex-syntax",
 ]
 
 [[package]]
 name = "regex-automata"
-version = "0.1.10"
+version = "0.3.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6c230d73fb8d8c1b9c0b3135c5142a8acee3a0558fb8db5cf1cb65f8d7862132"
+checksum = "c2f401f4955220693b56f8ec66ee9c78abffd8d1c4f23dc41a23839eb88f0795"
+dependencies = [
+ "aho-corasick",
+ "memchr",
+ "regex-syntax",
+]
 
 [[package]]
 name = "regex-syntax"
-version = "0.6.29"
+version = "0.7.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f162c6dd7b008981e4d40210aca20b4bd0f9b60ca9271061b07f78537722f2e1"
+checksum = "dbb5fb1acd8a1a18b3dd5be62d25485eb770e05afb408a9627d14d451bae12da"
 
 [[package]]
 name = "rustc-hash"
@@ -250,21 +255,35 @@ checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2"
 
 [[package]]
 name = "scopeguard"
-version = "1.1.0"
+version = "1.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd"
+checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49"
 
 [[package]]
 name = "serde"
-version = "1.0.159"
+version = "1.0.188"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3c04e8343c3daeec41f58990b9d77068df31209f2af111e059e9fe9646693065"
+checksum = "cf9e0fcba69a370eed61bcf2b728575f726b50b55cba78064753d708ddc7549e"
+dependencies = [
+ "serde_derive",
+]
+
+[[package]]
+name = "serde_derive"
+version = "1.0.188"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4eca7ac642d82aa35b60049a6eccb4be6be75e599bd2e9adb5f875a737654af2"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn 2.0.36",
+]
 
 [[package]]
 name = "smallvec"
-version = "1.10.0"
+version = "1.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a507befe795404456341dfab10cef66ead4c041f62b8b11bbb92bffe5d0953e0"
+checksum = "62bb4feee49fdd9f707ef802e22365a35de4b7b299de4763d44bfea899442ff9"
 
 [[package]]
 name = "syn"
@@ -278,14 +297,25 @@ dependencies = [
 ]
 
 [[package]]
+name = "syn"
+version = "2.0.36"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "91e02e55d62894af2a08aca894c6577281f76769ba47c94d5756bec8ac6e7373"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "unicode-ident",
+]
+
+[[package]]
 name = "target-lexicon"
-version = "0.12.6"
+version = "0.12.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8ae9980cab1db3fceee2f6c6f643d5d8de2997c58ee8d25fb0cc8a9e9e7348e5"
+checksum = "9d0e916b1148c8e263850e1ebcbd046f333e0683c724876bb0da63ea4373dc8a"
 
 [[package]]
 name = "tiktoken"
-version = "0.3.3"
+version = "0.5.1"
 dependencies = [
  "bstr",
  "fancy-regex",
@@ -296,9 +326,9 @@ dependencies = [
 
 [[package]]
 name = "unicode-ident"
-version = "1.0.8"
+version = "1.0.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4"
+checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b"
 
 [[package]]
 name = "unindent"
@@ -307,19 +337,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "e1766d682d402817b5ac4490b3c3002d91dfa0d22812f341609f97b08757359c"
 
 [[package]]
-name = "windows-sys"
-version = "0.45.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "75283be5efb2831d37ea142365f009c02ec203cd29a3ebecbc093d52315b66d0"
-dependencies = [
- "windows-targets",
-]
-
-[[package]]
 name = "windows-targets"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8e5180c00cd44c9b1c88adb3693291f1cd93605ded80c250a75d472756b4d071"
+checksum = "9a2fa6e2155d7247be68c096456083145c183cbbbc2764150dda45a87197940c"
 dependencies = [
  "windows_aarch64_gnullvm",
  "windows_aarch64_msvc",
@@ -332,42 +353,42 @@ dependencies = [
 
 [[package]]
 name = "windows_aarch64_gnullvm"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "597a5118570b68bc08d8d59125332c54f1ba9d9adeedeef5b99b02ba2b0698f8"
+checksum = "2b38e32f0abccf9987a4e3079dfb67dcd799fb61361e53e2882c3cbaf0d905d8"
 
 [[package]]
 name = "windows_aarch64_msvc"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e08e8864a60f06ef0d0ff4ba04124db8b0fb3be5776a5cd47641e942e58c4d43"
+checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc"
 
 [[package]]
 name = "windows_i686_gnu"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f"
+checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e"
 
 [[package]]
 name = "windows_i686_msvc"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060"
+checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406"
 
 [[package]]
 name = "windows_x86_64_gnu"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36"
+checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e"
 
 [[package]]
 name = "windows_x86_64_gnullvm"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3"
+checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc"
 
 [[package]]
 name = "windows_x86_64_msvc"
-version = "0.42.2"
+version = "0.48.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0"
+checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538"
diff --git a/pkgs/development/python-modules/tiktoken/default.nix b/pkgs/development/python-modules/tiktoken/default.nix
index 13eaecc0fb4d..3cf68063f119 100644
--- a/pkgs/development/python-modules/tiktoken/default.nix
+++ b/pkgs/development/python-modules/tiktoken/default.nix
@@ -6,7 +6,9 @@
 , rustPlatform
 , cargo
 , rustc
+, setuptools
 , setuptools-rust
+, wheel
 , libiconv
 , requests
 , regex
@@ -14,10 +16,10 @@
 }:
 let
   pname = "tiktoken";
-  version = "0.3.3";
+  version = "0.5.1";
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-l7WLe/2pRXkeyFXlPRZujsIMY3iUK5OFGmyRnd+dBJY=";
+    hash = "sha256-J+dzVkIyAE9PgQ/R+FI2Zz7DpW7X8SBvye2GcOvtuXo=";
   };
   postPatch = ''
     cp ${./Cargo.lock} Cargo.lock
@@ -25,18 +27,20 @@ let
 in
 buildPythonPackage {
   inherit pname version src postPatch;
-  format = "setuptools";
+  format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   nativeBuildInput = [
+    setuptools
     setuptools-rust
+    wheel
   ];
 
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src postPatch;
     name = "${pname}-${version}";
-    hash = "sha256-27xR7xVH/u40Xl4VbJW/yEbURf0UcGPG5QK/04igseA=";
+    hash = "sha256-Q7XO+auj4tKDAGbqNn9pmJg8EJvooN2ie0lWwZVrld4=";
   };
 
   nativeBuildInputs = [
@@ -54,6 +58,13 @@ buildPythonPackage {
     blobfile
   ];
 
+  # almost all tests require network access
+  doCheck = false;
+
+  pythonImportsCheck = [
+    "tiktoken"
+  ];
+
   meta = with lib; {
     description = "tiktoken is a fast BPE tokeniser for use with OpenAI's models.";
     homepage = "https://github.com/openai/tiktoken";
diff --git a/pkgs/development/python-modules/tiledb/default.nix b/pkgs/development/python-modules/tiledb/default.nix
index 34597923f3be..516a22f44cce 100644
--- a/pkgs/development/python-modules/tiledb/default.nix
+++ b/pkgs/development/python-modules/tiledb/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "tiledb";
-  version = "0.20.0";
+  version = "0.23.0";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "TileDB-Inc";
     repo = "TileDB-Py";
     rev = "refs/tags/${version}";
-    hash = "sha256-Be83b9JVxGxPYoOfqTfVm7qAjZD7cfH5BG6tbSHXhIQ=";
+    hash = "sha256-QxqUYu8y+k5SLRFtxpcs57gnAHgXIre0smURlqUzC1s=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/time-machine/default.nix b/pkgs/development/python-modules/time-machine/default.nix
index a8749adfb616..799570ada1b8 100644
--- a/pkgs/development/python-modules/time-machine/default.nix
+++ b/pkgs/development/python-modules/time-machine/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "time-machine";
-  version = "2.11.0";
+  version = "2.12.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "adamchainz";
     repo = pname;
     rev = version;
-    hash = "sha256-4HwHNowif0/YflznQrn8YRITjuiaBCB2mFIO0iCf6tA=";
+    hash = "sha256-vBww78/3vC3IA4Nh9Ne+rBo/CO9FggjP+TUUV2/ih9c=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/timm/default.nix b/pkgs/development/python-modules/timm/default.nix
index e67ed91c135f..63f32e9563cd 100644
--- a/pkgs/development/python-modules/timm/default.nix
+++ b/pkgs/development/python-modules/timm/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "timm";
-  version = "0.9.2";
+  version = "0.9.7";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -23,7 +23,7 @@ buildPythonPackage rec {
     owner = "huggingface";
     repo = "pytorch-image-models";
     rev = "refs/tags/v${version}";
-    hash = "sha256-gYrc8ds6urZvwDsTnzPjxjSTiAGzUD3RlCf0wogCrDI=";
+    hash = "sha256-poLyhwdpZpSH0w95Uj5n/fRoMe7fK0auMDWUna1d6/U=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/tinycss2/default.nix b/pkgs/development/python-modules/tinycss2/default.nix
index 35c8578cab44..5e6f441d3d3b 100644
--- a/pkgs/development/python-modules/tinycss2/default.nix
+++ b/pkgs/development/python-modules/tinycss2/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "tinycss2";
-  version = "1.1.1";
+  version = "1.2.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.6";
@@ -17,10 +17,10 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "kozea";
     repo = "tinycss2";
-    rev = "v${version}";
+    rev = "refs/tags/v${version}";
     # for tests
     fetchSubmodules = true;
-    hash = "sha256-RUF/3cjNgDFofoxl9iKY3u5ZAVVQmXu2Qbb5U4brdcQ=";
+    hash = "sha256-rJtxMmW30NK+E+Dhh/fu6FPrEojWWdoEWNt0raYEubs=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/torchinfo/default.nix b/pkgs/development/python-modules/torchinfo/default.nix
index 420a5fd8dfc5..e22993e8d23f 100644
--- a/pkgs/development/python-modules/torchinfo/default.nix
+++ b/pkgs/development/python-modules/torchinfo/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "torchinfo";
-  version = "1.7.2";
+  version = "1.64";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -18,7 +18,7 @@ buildPythonPackage rec {
     owner = "TylerYep";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-O+I7BNQ5moV/ZcbbuP/IFoi0LO0WsGHBbSfgPmFu1Ec=";
+    hash = "sha256-gcl8RxCD017FP4LtB60WVtOh7jg2Otv/vNd9hKneEAU=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/torchlibrosa/default.nix b/pkgs/development/python-modules/torchlibrosa/default.nix
index bab73b0dae93..ca8f890c0e62 100644
--- a/pkgs/development/python-modules/torchlibrosa/default.nix
+++ b/pkgs/development/python-modules/torchlibrosa/default.nix
@@ -2,7 +2,6 @@
 , lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
 , librosa
 , numpy
 , torch
@@ -10,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "torchlibrosa";
-  version = "0.0.9";
+  version = "0.1.0";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-+LzejKvLlJIIwWm9rYPCWQDSueIwnG5gbkwNE+wbv0A=";
+    hash = "sha256-Yqi+7fnJtBQaBiNN8/ECKfe6huZ2eMzuAkiexO8EQCg=";
   };
 
   propagatedBuildInputs = [
@@ -24,14 +23,6 @@ buildPythonPackage rec {
     torch
   ];
 
-  patches = [
-    # Fix run against librosa 0.9.0, https://github.com/qiuqiangkong/torchlibrosa/pull/8
-    (fetchpatch {
-      url = "https://github.com/qiuqiangkong/torchlibrosa/commit/eec7e7559a47d0ef0017322aee29a31dad0572d5.patch";
-      hash = "sha256-c1x3MA14Plm7+lVuqiuLWgSY6FW615qnKbcWAfbrcas=";
-    })
-  ];
-
   # Project has no tests.
   # In order to make pythonImportsCheck work, NUMBA_CACHE_DIR env var need to
   # be set to a writable dir (https://github.com/numba/numba/issues/4032#issuecomment-488102702).
diff --git a/pkgs/development/python-modules/torchmetrics/default.nix b/pkgs/development/python-modules/torchmetrics/default.nix
index e3d51f7b551f..f458db0ced03 100644
--- a/pkgs/development/python-modules/torchmetrics/default.nix
+++ b/pkgs/development/python-modules/torchmetrics/default.nix
@@ -15,7 +15,7 @@
 
 let
   pname = "torchmetrics";
-  version = "0.11.4";
+  version = "1.1.2";
 in
 buildPythonPackage {
   inherit pname version;
@@ -24,7 +24,7 @@ buildPythonPackage {
     owner = "PyTorchLightning";
     repo = "metrics";
     rev = "refs/tags/v${version}";
-    hash = "sha256-K8QLdDpnS4N8s3zXsifFloRXW/QXEm36mJXXKEBEJBs=";
+    hash = "sha256-qbO2POXJp2O0VL16zY5mb6TDpogs1L34anFVeSf502g=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/towncrier/default.nix b/pkgs/development/python-modules/towncrier/default.nix
index 06ec0f00a5b2..03b916883438 100644
--- a/pkgs/development/python-modules/towncrier/default.nix
+++ b/pkgs/development/python-modules/towncrier/default.nix
@@ -16,14 +16,14 @@
 
 buildPythonPackage rec {
   pname = "towncrier";
-  version = "22.12.0";
+  version = "23.6.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-nEnX519kaprqAq6QTAvBY5yP0UoBKS0rEjuNMHVkA00=";
+    hash = "sha256-/Cm9WrRyfI2s++Y29/tdxTuZgFti2hyWshSDYVn/cME=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/tox/default.nix b/pkgs/development/python-modules/tox/default.nix
index de9707116600..1b0bf1755ab7 100644
--- a/pkgs/development/python-modules/tox/default.nix
+++ b/pkgs/development/python-modules/tox/default.nix
@@ -24,14 +24,14 @@
 
 buildPythonPackage rec {
   pname = "tox";
-  version = "4.4.6";
+  version = "4.11.3";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "tox-dev";
     repo = "tox";
     rev = "refs/tags/${version}";
-    hash = "sha256-kWvYN2PA4al2X813Mu4R/n2ZLsZ+MaYCCWNfmYD3nBo=";
+    hash = "sha256-VLoWRAiQ1TP9S0f8TKwQ0H2Lgemd+dTzSM+TjhioDMk=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/tqdm/default.nix b/pkgs/development/python-modules/tqdm/default.nix
index 891771ebc698..640e62212081 100644
--- a/pkgs/development/python-modules/tqdm/default.nix
+++ b/pkgs/development/python-modules/tqdm/default.nix
@@ -2,7 +2,9 @@
 , stdenv
 , buildPythonPackage
 , fetchPypi
+, setuptools
 , setuptools-scm
+, wheel
 , pytestCheckHook
 , pytest-asyncio
 , pytest-timeout
@@ -14,15 +16,18 @@
 
 buildPythonPackage rec {
   pname = "tqdm";
-  version = "4.64.1";
+  version = "4.66.1";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-X09oKgBJUcG0ULx1PHEOkoDFdGzm/+3uJT3by/VM8eQ=";
+    hash = "sha256-2I5lH5242FUaYlVtPP+eMDQnTKXWbpMZfPJJDi3Lacc=";
   };
 
   nativeBuildInputs = [
+    setuptools
     setuptools-scm
+    wheel
   ];
 
   nativeCheckInputs = [
@@ -38,8 +43,7 @@ buildPythonPackage rec {
     lib.optional (!stdenv.isi686 && !stdenv.hostPlatform.isRiscV) pandas;
 
   pytestFlagsArray = [
-    # pytest-asyncio 0.17.0 compat; https://github.com/tqdm/tqdm/issues/1289
-    "--asyncio-mode=strict"
+    "-W" "ignore::FutureWarning"
   ];
 
   # Remove performance testing.
diff --git a/pkgs/development/python-modules/trainer/default.nix b/pkgs/development/python-modules/trainer/default.nix
index 43f147a6a9ca..466d6db8da5a 100644
--- a/pkgs/development/python-modules/trainer/default.nix
+++ b/pkgs/development/python-modules/trainer/default.nix
@@ -16,7 +16,7 @@
 
 let
   pname = "trainer";
-  version = "0.0.29";
+  version = "0.0.31";
 in
 buildPythonPackage {
   inherit pname version;
@@ -26,7 +26,7 @@ buildPythonPackage {
     owner = "coqui-ai";
     repo = "Trainer";
     rev = "refs/tags/v${version}";
-    hash = "sha256-ISEIIJReYKT3tEAF9/pckPg2+aYkBJyRWo6fvWZ/asI=";
+    hash = "sha256-avZuujeWG/UGkj7fcGB99Fw7KYktJPIDf8oB4wjoiD4=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/traitlets/default.nix b/pkgs/development/python-modules/traitlets/default.nix
index aa37946026f9..6df71a041b25 100644
--- a/pkgs/development/python-modules/traitlets/default.nix
+++ b/pkgs/development/python-modules/traitlets/default.nix
@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "traitlets";
-  version = "5.9.0";
+  version = "5.10.0";
   format = "pyproject";
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-9s3iGpxoz3Vq8CA19y1acjv2B+hi574z7OUFq/Sjutk=";
+    hash = "sha256-9YTqIJJARm5m6R88gap9AEukz3lJkLDHdZOKFUQhfNE=";
   };
 
   nativeBuildInputs = [ hatchling ];
diff --git a/pkgs/development/python-modules/traitsui/default.nix b/pkgs/development/python-modules/traitsui/default.nix
index de0928508844..0c7245225d10 100644
--- a/pkgs/development/python-modules/traitsui/default.nix
+++ b/pkgs/development/python-modules/traitsui/default.nix
@@ -1,6 +1,7 @@
 { lib
 , fetchPypi
 , buildPythonPackage
+, setuptools
 , traits
 , pyface
 , pythonOlder
@@ -8,16 +9,20 @@
 
 buildPythonPackage rec {
   pname = "traitsui";
-  version = "7.4.3";
-  format = "setuptools";
+  version = "8.0.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-2zJRfpYioFgMIyCeE/gDLOoA5hxndJNnCf9F52M11bk=";
+    hash = "sha256-kBudHLxFUT4Apzl2d7CYRBsod0tojzChWbrUgBv0A2Q=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   propagatedBuildInputs = [
     traits
     pyface
diff --git a/pkgs/development/python-modules/treeo/default.nix b/pkgs/development/python-modules/treeo/default.nix
index 1560e1810ba6..789eb346e8c6 100644
--- a/pkgs/development/python-modules/treeo/default.nix
+++ b/pkgs/development/python-modules/treeo/default.nix
@@ -12,14 +12,14 @@ buildPythonPackage rec {
   # Note that there is a version 0.4.0, but it was released in error. At the
   # time of writing (2022-03-29), v0.0.11 is the latest as reported on GitHub
   # and PyPI.
-  version = "0.0.11";
+  version = "0.4.0";
   format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "cgarciae";
     repo = pname;
-    rev = version;
-    hash = "sha256-zs3F8i+G5OX/A9wOO60xVuvnm2QqrL+dHIrC0qwH37o=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-0py7sKjq6WqdsZwTq61jqaIbULTfwtpz29TTpt8M2Zw=";
   };
 
   # See https://github.com/cgarciae/treex/issues/68.
diff --git a/pkgs/development/python-modules/trio/default.nix b/pkgs/development/python-modules/trio/default.nix
index fb985e890a77..c01db3259a7d 100644
--- a/pkgs/development/python-modules/trio/default.nix
+++ b/pkgs/development/python-modules/trio/default.nix
@@ -6,6 +6,7 @@
 , idna
 , outcome
 , pytestCheckHook
+, pytest-trio
 , pyopenssl
 , trustme
 , sniffio
@@ -16,15 +17,24 @@
 , coreutils
 }:
 
+let
+  # escape infinite recursion with pytest-trio
+  pytest-trio' = (pytest-trio.override {
+    trio = null;
+  }).overrideAttrs {
+    doCheck = false;
+    pythonImportsCheck = [];
+  };
+in
 buildPythonPackage rec {
   pname = "trio";
-  version = "0.22.0";
+  version = "0.22.2";
   format = "setuptools";
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-zmjxxUAKR7E3xaTecsfJAb1OeiT73r/ptB3oxsBOqs8=";
+    hash = "sha256-OIfPGMi8yJRDNCAwVGg4jax2ky6WaK+hxJqjgGtqzLM=";
   };
 
   propagatedBuildInputs = [
@@ -46,13 +56,16 @@ buildPythonPackage rec {
     jedi
     pyopenssl
     pytestCheckHook
+    pytest-trio'
     trustme
     yapf
   ];
 
   preCheck = ''
-    substituteInPlace trio/tests/test_subprocess.py \
+    substituteInPlace trio/_tests/test_subprocess.py \
       --replace "/bin/sleep" "${coreutils}/bin/sleep"
+
+    export HOME=$TMPDIR
   '';
 
   # It appears that the build sandbox doesn't include /etc/services, and these tests try to use it.
@@ -64,6 +77,8 @@ buildPythonPackage rec {
     "static_tool_sees_all_symbols"
     # tests pytest more than python
     "fallback_when_no_hook_claims_it"
+    # requires mypy
+    "test_static_tool_sees_class_members"
   ];
 
   pytestFlagsArray = [
diff --git a/pkgs/development/python-modules/trove-classifiers/default.nix b/pkgs/development/python-modules/trove-classifiers/default.nix
index 7cd0dd7ca8a5..e9691044a926 100644
--- a/pkgs/development/python-modules/trove-classifiers/default.nix
+++ b/pkgs/development/python-modules/trove-classifiers/default.nix
@@ -9,14 +9,14 @@
 let
   self = buildPythonPackage rec {
     pname = "trove-classifiers";
-    version = "2023.7.6";
+    version = "2023.8.7";
     format = "setuptools";
 
     disabled = pythonOlder "3.7";
 
     src = fetchPypi {
       inherit pname version;
-      hash = "sha256-io4Wi1HSD+1gcEODHTdjK7UJGdHICmTg8Tk3RGkaiyI=";
+      hash = "sha256-yfKgqF1UXlNi6Wfk8Gn1b939kSFeIv+kjGb7KDUhMZo=";
     };
 
     postPatch = ''
diff --git a/pkgs/development/python-modules/twisted/default.nix b/pkgs/development/python-modules/twisted/default.nix
index 6c9014d5bd33..801adb77da37 100644
--- a/pkgs/development/python-modules/twisted/default.nix
+++ b/pkgs/development/python-modules/twisted/default.nix
@@ -1,34 +1,42 @@
 { lib
 , stdenv
 , buildPythonPackage
-, pythonAtLeast
 , pythonOlder
 , fetchPypi
 , fetchpatch
 , python
-, appdirs
+
+# build-system
+, hatchling
+, hatch-fancy-pypi-readme
+
+# dependencies
 , attrs
 , automat
-, bcrypt
 , constantly
+, hyperlink
+, incremental
+, typing-extensions
+, zope_interface
+
+# optional-dependencies
+, appdirs
+, bcrypt
 , cryptography
-, git
-, glibcLocales
 , h2
-, hyperlink
-, hypothesis
 , idna
-, incremental
 , priority
 , pyasn1
-, pyhamcrest
-, pynacl
 , pyopenssl
 , pyserial
 , service-identity
-, setuptools
-, typing-extensions
-, zope_interface
+
+# tests
+, cython-test-exception-raiser
+, git
+, glibcLocales
+, pyhamcrest
+, hypothesis
 
   # for passthru.tests
 , cassandra-driver
@@ -46,16 +54,15 @@
 
 buildPythonPackage rec {
   pname = "twisted";
-  version = "22.10.0";
-  format = "setuptools";
+  version = "23.8.0";
+  format = "pyproject";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
-    pname = "Twisted";
-    inherit version;
+    inherit pname version;
     extension = "tar.gz";
-    hash = "sha256-Mqy9QKlPX0bntCwQm/riswIlCUVWF4Oot6BZBI8tTTE=";
+    hash = "sha256-PHM2Ct0XM2piLA2BHCos4phmtuWbESX9ZQmxclIJiiQ=";
   };
 
   patches = [
@@ -70,42 +77,27 @@ buildPythonPackage rec {
       url = "https://github.com/mweinelt/twisted/commit/e69e652de671aac0abf5c7e6c662fc5172758c5a.patch";
       hash = "sha256-LmvKUTViZoY/TPBmSlx4S9FbJNZfB5cxzn/YcciDmoI=";
     })
-    # remove half broken pyasn1 integration that blow up with pyasn 0.5.0
-    # https://github.com/twisted/twisted/pull/11843
-    (fetchpatch {
-      url = "https://github.com/twisted/twisted/commit/bdee0eb835a76b2982beaf10c85269ff25ea09fa.patch";
-      excludes = [ "pyproject.toml" "tox.ini" ];
-      hash = "sha256-oGAHmZMpMWfK+2zEDjHD115sW7exCYqfORVOLw+Wa6M=";
-    })
-  ] ++ lib.optionals (pythonAtLeast "3.11") [
-    (fetchpatch {
-      url = "https://github.com/twisted/twisted/pull/11734.diff";
-      excludes = [ ".github/workflows/*" ];
-      hash = "sha256-Td08pDxHwl7fPLCA6rUySuXpy8YmZfvXPHGsBpdcmSo=";
-    })
-    (fetchpatch {
-      url = "https://github.com/twisted/twisted/commit/00bf5be704bee022ba4d9b24eb6c2c768b4a1921.patch";
-      hash = "sha256-fnBzczm3OlhbjRcePIQ7dSX6uldlCZ9DJTS+UFO2nAQ=";
-    })
   ];
 
   __darwinAllowLocalNetworking = true;
 
+  nativeBuildInputs = [
+    hatchling
+    hatch-fancy-pypi-readme
+    incremental
+  ];
+
   propagatedBuildInputs = [
     attrs
     automat
     constantly
     hyperlink
     incremental
-    setuptools
     typing-extensions
     zope_interface
   ];
 
   postPatch = ''
-    substituteInPlace pyproject.toml \
-      --replace '"pyasn1 >= 0.4",' ""
-
     echo 'ListingTests.test_localeIndependent.skip = "Timezone issue"'>> src/twisted/conch/test/test_cftp.py
     echo 'ListingTests.test_newFile.skip = "Timezone issue"'>> src/twisted/conch/test/test_cftp.py
     echo 'ListingTests.test_newSingleDigitDayOfMonth.skip = "Timezone issue"'>> src/twisted/conch/test/test_cftp.py
@@ -128,6 +120,13 @@ buildPythonPackage rec {
     # fails since migrating to libxcrypt
     echo 'HelperTests.test_refuteCryptedPassword.skip = "OSError: Invalid argument"' >> src/twisted/conch/test/test_checkers.py
 
+    # expectation mismatch with `python -m twisted --help` and `python -m twisted.trial --help` usage output
+    echo 'MainTests.test_twisted.skip = "Expectation Mismatch"' >> src/twisted/test/test_main.py
+    echo 'MainTests.test_trial.skip = "Expectation Mismatch"' >> src/twisted/test/test_main.py
+
+    # tests for missing https support in usage
+    echo 'ServiceTests.test_HTTPSFailureOnMissingSSL.skip = "Expectation Mismatch"' >> src/twisted/web/test/test_tap.py
+
     # not packaged
     substituteInPlace src/twisted/test/test_failure.py \
       --replace "from cython_test_exception_raiser import raiser  # type: ignore[import]" "raiser = None"
@@ -154,12 +153,15 @@ buildPythonPackage rec {
   '';
 
   nativeCheckInputs = [
+    cython-test-exception-raiser
     git
     glibcLocales
     hypothesis
     pyhamcrest
   ]
   ++ passthru.optional-dependencies.conch
+  ++ passthru.optional-dependencies.http2
+  ++ passthru.optional-dependencies.serial
   # not supported on aarch64-darwin: https://github.com/pyca/pyopenssl/issues/873
   ++ lib.optionals (!(stdenv.isDarwin && stdenv.isAarch64)) passthru.optional-dependencies.tls;
 
@@ -171,9 +173,8 @@ buildPythonPackage rec {
   '';
 
   passthru = {
-    optional-dependencies = rec {
+    optional-dependencies = {
       conch = [ appdirs bcrypt cryptography pyasn1 ];
-      conch_nacl = conch ++ [ pynacl ];
       http2 = [ h2 priority ];
       serial = [ pyserial ];
       tls = [ idna pyopenssl service-identity ];
diff --git a/pkgs/development/python-modules/txredisapi/default.nix b/pkgs/development/python-modules/txredisapi/default.nix
index 9d8b268b30b2..315e7f8e2713 100644
--- a/pkgs/development/python-modules/txredisapi/default.nix
+++ b/pkgs/development/python-modules/txredisapi/default.nix
@@ -1,20 +1,39 @@
-{ lib, buildPythonPackage, fetchFromGitHub, nixosTests, six, twisted }:
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, setuptools
+, six
+, twisted
+, nixosTests
+}:
 
 buildPythonPackage rec {
   pname = "txredisapi";
-  version = "1.4.7";
+  version = "1.4.9";
+  format = "pyproject";
 
   src = fetchFromGitHub {
     owner = "IlyaSkriblovsky";
     repo = "txredisapi";
-    rev = "1.4.7";
-    sha256 = "1f7j3c5l7jcfphvsk7nqmgyb4jaydbzq081m555kw0f9xxak0pgq";
+    rev = "refs/tags/${version}";
+    hash = "sha256-6Z2vurTAw9YHxvEiixtdxBH0YHj+Y9aTdsSkafPMZus=";
   };
 
-  propagatedBuildInputs = [ six twisted ];
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  propagatedBuildInputs = [
+    six
+    twisted
+  ]
+  ++ twisted.optional-dependencies.tls;
+
+  pythonImportsCheck = [
+    "txredisapi"
+  ];
 
   doCheck = false;
-  pythonImportsCheck = [ "txredisapi" ];
 
   passthru.tests.unit-tests = nixosTests.txredisapi;
 
diff --git a/pkgs/development/python-modules/typed-settings/default.nix b/pkgs/development/python-modules/typed-settings/default.nix
index af8b9c5ef364..3511a87127ba 100644
--- a/pkgs/development/python-modules/typed-settings/default.nix
+++ b/pkgs/development/python-modules/typed-settings/default.nix
@@ -14,7 +14,7 @@
 
 buildPythonPackage rec {
   pname = "typed-settings";
-  version = "2.0.2";
+  version = "23.0.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
   src = fetchPypi {
     pname = "typed_settings";
     inherit version;
-    hash = "sha256-AYHA1xFS0g99cloGIjvi8loKS/Q/AteyLiLH8rf+2No=";
+    hash = "sha256-gnwiSCVWU0mpUDiHt9GE2DtfFd2xpOsDL5r/fFctkg4=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/typeguard/default.nix b/pkgs/development/python-modules/typeguard/default.nix
index c2a6171e1b81..7fd258e9123f 100644
--- a/pkgs/development/python-modules/typeguard/default.nix
+++ b/pkgs/development/python-modules/typeguard/default.nix
@@ -2,6 +2,7 @@
 , fetchPypi
 , pythonOlder
 , lib
+, setuptools
 , setuptools-scm
 , pytestCheckHook
 , typing-extensions
@@ -13,30 +14,39 @@
 
 buildPythonPackage rec {
   pname = "typeguard";
-  version = "2.13.3";
+  version = "4.1.5";
+  format = "pyproject";
+
   disabled = pythonOlder "3.5";
-  outputs = [ "out" "doc" ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "00edaa8da3a133674796cf5ea87d9f4b4c367d77476e185e80251cc13dfbb8c4";
+    hash = "sha256-6goRO7wRG8/8kHieuyFWJcljQR9wlqfpBi1ORjDBVf0=";
   };
 
+  outputs = [
+    "out"
+    "doc"
+  ];
+
   nativeBuildInputs = [
     glibcLocales
+    setuptools
     setuptools-scm
     sphinxHook
     sphinx-autodoc-typehints
     sphinx-rtd-theme
   ];
 
-  LC_ALL = "en_US.utf-8";
+  propagatedBuildInputs = [
+    typing-extensions
+  ];
 
-  postPatch = ''
-    substituteInPlace setup.cfg --replace " --cov" ""
-  '';
+  env.LC_ALL = "en_US.utf-8";
 
-  nativeCheckInputs = [ pytestCheckHook typing-extensions ];
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
   disabledTestPaths = [
     # mypy tests aren't passing with latest mypy
diff --git a/pkgs/development/python-modules/types-docutils/default.nix b/pkgs/development/python-modules/types-docutils/default.nix
index d42e2c0a2c84..c67234d5f25d 100644
--- a/pkgs/development/python-modules/types-docutils/default.nix
+++ b/pkgs/development/python-modules/types-docutils/default.nix
@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "types-docutils";
-  version = "0.19.1.6";
+  version = "0.20.0.3";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ozSnA6hoiRDQhpRk8fb4vTMNdYQ72rT4k1R7+ylBegE=";
+    hash = "sha256-SSjnkPQrmdWDOZD5nI3Z+p8Wgl9u0wOAypgYRtNocM0=";
   };
 
   # Module doesn't have tests
diff --git a/pkgs/development/python-modules/types-pillow/default.nix b/pkgs/development/python-modules/types-pillow/default.nix
index c3c63592624f..74b85c6e4a4d 100644
--- a/pkgs/development/python-modules/types-pillow/default.nix
+++ b/pkgs/development/python-modules/types-pillow/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "types-pillow";
-  version = "10.0.0.2";
+  version = "10.0.0.3";
   format = "setuptools";
 
   src = fetchPypi {
     inherit version;
     pname = "types-Pillow";
-    hash = "sha256-/gk4CrItQSztmJoGfp7kr3Gfo6R7obU7IytGUUqHEEI=";
+    hash = "sha256-rgyHfTY9o0m7uCxUY8nngDcpDMB9NxTLDOr10vf1yCU=";
   };
 
   # Modules doesn't have tests
diff --git a/pkgs/development/python-modules/types-setuptools/default.nix b/pkgs/development/python-modules/types-setuptools/default.nix
index efa9b6cf24b7..bac128984bfb 100644
--- a/pkgs/development/python-modules/types-setuptools/default.nix
+++ b/pkgs/development/python-modules/types-setuptools/default.nix
@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "types-setuptools";
-  version = "67.4.0.3";
+  version = "68.2.0.0";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-GelY39vxxaYo5UwqfuhJNQUa+3J40MHNsIrBlHV+47E=";
+    hash = "sha256-pCFvHi7ynQiYd7OvOrKs9InrhpzK+QUSXGnS3Dky/YU=";
   };
 
   # Module doesn't have tests
diff --git a/pkgs/development/python-modules/types-toml/default.nix b/pkgs/development/python-modules/types-toml/default.nix
index 3e475b17cfd1..140664989f3b 100644
--- a/pkgs/development/python-modules/types-toml/default.nix
+++ b/pkgs/development/python-modules/types-toml/default.nix
@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "types-toml";
-  version = "0.10.8.5";
+  version = "0.10.8.7";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-v4D859LXS+kRSPR7iNmuWt6xAkq+8iqi/bq8A21rizw=";
+    hash = "sha256-WLB4HGgeZx/wtcAxkwmRBon0q0DookMeIF1wyUu277E=";
   };
 
   # Module doesn't have tests
diff --git a/pkgs/development/python-modules/types-typed-ast/default.nix b/pkgs/development/python-modules/types-typed-ast/default.nix
index ad4207769a1d..32671d584641 100644
--- a/pkgs/development/python-modules/types-typed-ast/default.nix
+++ b/pkgs/development/python-modules/types-typed-ast/default.nix
@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "types-typed-ast";
-  version = "1.5.8.6";
+  version = "1.5.8.7";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-lUO1hj25e0EqKx1fQHyQgzY2WgutME1k6DKKdp9IwjA=";
+    hash = "sha256-93lfb51ZezUhIxQEC5k/ZhO1HYFzjtzjweOj6e9lUSQ=";
   };
 
   # Module doesn't have tests
diff --git a/pkgs/development/python-modules/tzdata/default.nix b/pkgs/development/python-modules/tzdata/default.nix
index 879024957937..91bbc854a26d 100644
--- a/pkgs/development/python-modules/tzdata/default.nix
+++ b/pkgs/development/python-modules/tzdata/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "tzdata";
-  version = "2022.7";
+  version = "2023.3";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-/l+Gbt3YuW6fy6l4+OUDyQmxnqfv2hHlLjlJS606e/o=";
+    hash = "sha256-Ee8eCOVKyw1Plb2xvgXaZZZz3krL0hv5xp6UzF6Qejo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/tzlocal/default.nix b/pkgs/development/python-modules/tzlocal/default.nix
index 5b32b4343a05..e9ab0bc6abe3 100644
--- a/pkgs/development/python-modules/tzlocal/default.nix
+++ b/pkgs/development/python-modules/tzlocal/default.nix
@@ -12,7 +12,7 @@
 
 buildPythonPackage rec {
   pname = "tzlocal";
-  version = "4.3"; # version needs to be compatible with APScheduler
+  version = "5.0.1"; # version needs to be compatible with APScheduler
 
   disabled = pythonOlder "3.7";
 
@@ -20,7 +20,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-PyHQnhsqqfLazKEtokDKN947pSN6k63f1tWTr+kHM1U=";
+    hash = "sha256-RuuZrUvbcfP3K30k9CZ3U+JAlE7PwW8l0nGbqJgnqAM=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/uamqp/default.nix b/pkgs/development/python-modules/uamqp/default.nix
index 2ae0d32a5679..207ad3d43727 100644
--- a/pkgs/development/python-modules/uamqp/default.nix
+++ b/pkgs/development/python-modules/uamqp/default.nix
@@ -16,13 +16,13 @@
 
 buildPythonPackage rec {
   pname = "uamqp";
-  version = "1.6.4";
+  version = "1.6.5";
 
   src = fetchFromGitHub {
     owner = "Azure";
     repo = "azure-uamqp-python";
-    rev = "refs/tags/v.${version}";
-    hash = "sha256-OjZTroaBuUB/dakl5gAYigJkim9EFiCwUEBo7z35vhQ=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-q8FxM4PBXLD5q68nrUJ+TGkui1yQJ3HHNF7jn+e+HkA=";
   };
 
   patches = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [
diff --git a/pkgs/development/python-modules/uc-micro-py/default.nix b/pkgs/development/python-modules/uc-micro-py/default.nix
index d83a4cbd54d2..f6aa059d709c 100644
--- a/pkgs/development/python-modules/uc-micro-py/default.nix
+++ b/pkgs/development/python-modules/uc-micro-py/default.nix
@@ -3,24 +3,34 @@
 , fetchFromGitHub
 , pythonOlder
 , pytestCheckHook
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "uc-micro-py";
-  version = "1.0.1";
-  format = "setuptools";
+  version = "1.0.2";
+  format = "pyproject";
 
-  disabled = pythonOlder "3.6";
+  disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "tsutsu3";
     repo = "uc.micro-py";
-    rev = "v${version}";
-    hash = "sha256-23mKwoRGjtxpCOC26V8bAN5QEHLDOoSqPeTlUuIrxZ0=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-PUeWYG/VyxCfhB7onAcDFow1yYqArjmfMT99+058P7U=";
   };
 
-  nativeCheckInputs = [ pytestCheckHook ];
-  pythonImportsCheck = [ "uc_micro" ];
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  pythonImportsCheck = [
+    "uc_micro"
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
   meta = with lib; {
     description = "Micro subset of unicode data files for linkify-it-py";
diff --git a/pkgs/development/python-modules/ucsmsdk/default.nix b/pkgs/development/python-modules/ucsmsdk/default.nix
index f9d1cf6c1d79..90f5b783cc8d 100644
--- a/pkgs/development/python-modules/ucsmsdk/default.nix
+++ b/pkgs/development/python-modules/ucsmsdk/default.nix
@@ -7,14 +7,14 @@
 
 buildPythonPackage rec {
   pname = "ucsmsdk";
-  version = "0.9.14";
+  version = "0.9.15";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "CiscoUcs";
     repo = "ucsmsdk";
-    rev = "v${version}";
-    hash = "sha256-lSkURvKRgW+qV1A8OT4WYsMGlxxIqaFnxQ3Rnlixdw0=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-xNRfsIfhoVI5ORWn6NmLCuMMJregIZWQ20QBiBsA1Pc=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/ufo2ft/default.nix b/pkgs/development/python-modules/ufo2ft/default.nix
index 9ed1ec78e1bd..98087eaae75d 100644
--- a/pkgs/development/python-modules/ufo2ft/default.nix
+++ b/pkgs/development/python-modules/ufo2ft/default.nix
@@ -21,12 +21,12 @@
 
 buildPythonPackage rec {
   pname = "ufo2ft";
-  version = "2.30.0";
+  version = "2.33.4";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ZpO55rNXkVbqMdGxsZn77gJnGBbM8c8GIAaQnTzVnf8=";
+    hash = "sha256-e6p/H1Vub0Ln0VhQvwsVLuD/p8uNG5oCPhfQPCTl1nY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/ufoLib2/default.nix b/pkgs/development/python-modules/ufoLib2/default.nix
index eba49e474aaf..c2fef2e4656a 100644
--- a/pkgs/development/python-modules/ufoLib2/default.nix
+++ b/pkgs/development/python-modules/ufoLib2/default.nix
@@ -15,12 +15,12 @@
 
 buildPythonPackage rec {
   pname = "ufoLib2";
-  version = "0.14.0";
+  version = "0.16.0";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-OdUJfNe3nOQyCf3nT9/5y/C8vZXnSAWiLHvZ8GXMViw=";
+    hash = "sha256-SfDcf3LMrP5/rv4NU9N5cdRWZNiwVj7zaVb6e/pVor0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/uharfbuzz/default.nix b/pkgs/development/python-modules/uharfbuzz/default.nix
index b93552c4e07f..34bb5fef6df4 100644
--- a/pkgs/development/python-modules/uharfbuzz/default.nix
+++ b/pkgs/development/python-modules/uharfbuzz/default.nix
@@ -11,7 +11,7 @@
 
 buildPythonPackage rec {
   pname = "uharfbuzz";
-  version = "0.37.0";
+  version = "0.37.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.5";
@@ -19,9 +19,9 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "harfbuzz";
     repo = "uharfbuzz";
-    rev = "v${version}";
+    rev = "refs/tags/v${version}";
     fetchSubmodules = true;
-    hash = "sha256-CZp+/5fG5IBawnIZLeO9lXke8rodqRcSf+ofyF584mc=";
+    hash = "sha256-876gFYyMqeGYoXMdBguV6bi7DJKHJs9HNLw9xRu+Mxk=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/ujson/default.nix b/pkgs/development/python-modules/ujson/default.nix
index 02376023260d..9816c88f3e6b 100644
--- a/pkgs/development/python-modules/ujson/default.nix
+++ b/pkgs/development/python-modules/ujson/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "ujson";
-  version = "5.7.0";
+  version = "5.8.0";
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-54jl1dyuj2EYrJtF0LiRoNVfesSA7dy38HJj8rzzeyM=";
+    hash = "sha256-eOMY3vSt6JikYbPZKnn5RB5+Dk0q1UGavtQzbXAsdCU=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/univers/default.nix b/pkgs/development/python-modules/univers/default.nix
index ea450651da7e..3308be6a9b29 100644
--- a/pkgs/development/python-modules/univers/default.nix
+++ b/pkgs/development/python-modules/univers/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "univers";
-  version = "30.10.0";
+  version = "30.11.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-IJeM9Nzfqs1B0xP43i6u65XSEVPdiGhXWuORglbNARI=";
+    hash = "sha256-xyrg8B+C5xUN8zHLrMbAe/MWjZb8fCL0MIAz2w4B7/U=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/urllib3/default.nix b/pkgs/development/python-modules/urllib3/default.nix
index 13ef39be76db..a5a3e6b8b644 100644
--- a/pkgs/development/python-modules/urllib3/default.nix
+++ b/pkgs/development/python-modules/urllib3/default.nix
@@ -5,6 +5,7 @@
 , certifi
 , cryptography
 , fetchPypi
+, hatchling
 , idna
 , isPyPy
 , mock
@@ -20,14 +21,18 @@
 
 buildPythonPackage rec {
   pname = "urllib3";
-  version = "1.26.16";
-  format = "setuptools";
+  version = "2.0.5";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-jxNfZQJ1a95rKpsomJ31++h8mXDOyqaQQe3M5/BYmxQ=";
+    hash = "sha256-E6vzc4LqLOb7dE1NrWeDjuyFfJ9PVwCYkYBeC14SNZQ=";
   };
 
+  nativeBuildInputs = [
+    hatchling
+  ];
+
   # FIXME: remove backwards compatbility hack
   propagatedBuildInputs = passthru.optional-dependencies.brotli
     ++ passthru.optional-dependencies.socks;
diff --git a/pkgs/development/python-modules/urwid/default.nix b/pkgs/development/python-modules/urwid/default.nix
index 014382b21501..7f9512be2cb1 100644
--- a/pkgs/development/python-modules/urwid/default.nix
+++ b/pkgs/development/python-modules/urwid/default.nix
@@ -1,43 +1,57 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
-, isPy3k
+
+# build-system
+, setuptools
+, setuptools-scm
+, wheel
+
+# tests
 , glibcLocales
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "urwid";
-  version = "2.1.2";
-  format = "setuptools";
+  version = "2.2.1";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "588bee9c1cb208d0906a9f73c613d2bd32c3ed3702012f51efe318a3f2127eae";
+    hash = "sha256-4zkRqxjyxz/dvpvyFtAh504gstWqm+MEA8WPVRMbuKE=";
   };
 
-  patches = [
-    # https://github.com/urwid/urwid/pull/517
-    (fetchpatch {
-      name = "python311-compat.patch";
-      url = "https://github.com/urwid/urwid/commit/42c1ed1eeb663179b265bae9b384d7ec11c8a9b5.patch";
-      hash = "sha256-Oz8O/M6AdqbB6C/BB5rtxp8FgdGhZUxkSxKIyq5Dmho=";
-    })
+  postPatch = ''
+    sed -i '/addopts =/d' pyproject.toml
+  '';
+
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+    wheel
   ];
 
-  # tests need to be able to set locale
-  LC_ALL = "en_US.UTF-8";
-  nativeCheckInputs = [ glibcLocales ];
+  nativeCheckInputs = [
+    glibcLocales
+    pytestCheckHook
+  ];
+
+  env.LC_ALL = "en_US.UTF8";
 
-  # tests which assert on strings don't decode results correctly
-  doCheck = isPy3k;
+  disabledTestPaths = [
+    # expect call hangs
+    "urwid/tests/test_vterm.py"
+  ];
 
   pythonImportsCheck = [
     "urwid"
   ];
 
   meta = with lib; {
+    changelog = "https://github.com/urwid/urwid/releases/tag/${version}";
     description = "A full-featured console (xterm et al.) user interface library";
+    downloadPage = "https://github.com/urwid/urwid";
     homepage = "https://urwid.org/";
     license = licenses.lgpl21Plus;
     maintainers = with maintainers; [ ];
diff --git a/pkgs/development/python-modules/uvicorn/default.nix b/pkgs/development/python-modules/uvicorn/default.nix
index 9baa150afb71..bbec8df096fa 100644
--- a/pkgs/development/python-modules/uvicorn/default.nix
+++ b/pkgs/development/python-modules/uvicorn/default.nix
@@ -17,7 +17,7 @@
 
 buildPythonPackage rec {
   pname = "uvicorn";
-  version = "0.23.1";
+  version = "0.23.2";
   disabled = pythonOlder "3.8";
 
   format = "pyproject";
@@ -25,8 +25,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "encode";
     repo = pname;
-    rev = version;
-    hash = "sha256-X/G6K0X4G1EsMIBpvqy62zZ++8paTHNqgYLi+B7YK+0=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-98Ahb6syD/J9StwaOqVj/MCdzbHOgey0sixp7SJnROE=";
   };
 
   outputs = [
diff --git a/pkgs/development/python-modules/validators/default.nix b/pkgs/development/python-modules/validators/default.nix
index 1c0131c0549d..8e29effda9a2 100644
--- a/pkgs/development/python-modules/validators/default.nix
+++ b/pkgs/development/python-modules/validators/default.nix
@@ -1,14 +1,14 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, poetry-core
 , pytestCheckHook
 , pythonOlder
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "validators";
-  version = "0.21.1";
+  version = "0.22.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
@@ -17,11 +17,11 @@ buildPythonPackage rec {
     owner = "python-validators";
     repo = "validators";
     rev = "refs/tags/${version}";
-    hash = "sha256-b5K1WP+cEAjPBXu9sAZQf1J5H7PLnn94400Zd/0Y9ew=";
+    hash = "sha256-Qu6Tu9uIluT1KBJYkFjDFt9AWN2Kez3uCYDQknXqYrU=";
   };
 
   nativeBuildInputs = [
-    poetry-core
+    setuptools
   ];
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/vcrpy/default.nix b/pkgs/development/python-modules/vcrpy/default.nix
index 043d08a022bb..fc4283766b52 100644
--- a/pkgs/development/python-modules/vcrpy/default.nix
+++ b/pkgs/development/python-modules/vcrpy/default.nix
@@ -1,7 +1,6 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, mock
 , pytest-httpbin
 , pytestCheckHook
 , pythonOlder
@@ -13,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "vcrpy";
-  version = "4.2.1";
+  version = "5.1.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-fNPoGixJLgHCgfGAvMKoa1ILFz0rZWy12J2ZR1Qj4BM=";
+    hash = "sha256-u/FTLyYYoE8RvOKpmvOpZHoyyICVcpP/keCl8Ye2s9I=";
   };
 
   propagatedBuildInputs = [
@@ -41,6 +40,9 @@ buildPythonPackage rec {
 
   disabledTests = [
     "TestVCRConnection"
+    # https://github.com/kevin1024/vcrpy/issues/645
+    "test_get_vcr_with_matcher"
+    "test_testcase_playback"
   ];
 
   pythonImportsCheck = [
diff --git a/pkgs/development/python-modules/vector/default.nix b/pkgs/development/python-modules/vector/default.nix
index 03f38e12a6f1..cbfe657219e8 100644
--- a/pkgs/development/python-modules/vector/default.nix
+++ b/pkgs/development/python-modules/vector/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "vector";
-  version = "1.0.0";
+  version = "1.1.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-T62k/dqlwb1ppbopb/2UjMy1da16vlPRSWD1b+Mt1ME=";
+    hash = "sha256-aVdFHlnOUI9hgzVRnFPzDOuItwU9ZfPRZkWf1wjtOLU=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/velbus-aio/default.nix b/pkgs/development/python-modules/velbus-aio/default.nix
index 03c44ef031c0..0b06bf91548d 100644
--- a/pkgs/development/python-modules/velbus-aio/default.nix
+++ b/pkgs/development/python-modules/velbus-aio/default.nix
@@ -18,7 +18,7 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "Cereal2nd";
     repo = pname;
-    rev = version;
+    rev = "refs/tags/${version}";
     hash = "sha256-v2B+tDqvQTm+K+cvTRM8LnfaFp5CTsI8/B5clBDNE08=";
     fetchSubmodules = true;
   };
diff --git a/pkgs/development/python-modules/virtualenv/default.nix b/pkgs/development/python-modules/virtualenv/default.nix
index 10602bfd4f3a..18db218039d3 100644
--- a/pkgs/development/python-modules/virtualenv/default.nix
+++ b/pkgs/development/python-modules/virtualenv/default.nix
@@ -21,14 +21,14 @@
 
 buildPythonPackage rec {
   pname = "virtualenv";
-  version = "20.24.0";
+  version = "20.24.5";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-4qfO+dqIDWk7kz23ZUNndU8U4gZQ3GDo7nOFVx+Fk6M=";
+    hash = "sha256-6DYZZ/bab73xQmSDv+n8qCh8JCrAvDBCmQVyHO+/91I=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/vncdo/default.nix b/pkgs/development/python-modules/vncdo/default.nix
index b6d12a67185c..5f27bba823c4 100644
--- a/pkgs/development/python-modules/vncdo/default.nix
+++ b/pkgs/development/python-modules/vncdo/default.nix
@@ -9,13 +9,13 @@
 
 buildPythonPackage rec {
   pname = "vncdo";
-  version = "0.12.0";
+  version = "1.1.0";
 
   src = fetchFromGitHub {
     owner = "sibson";
     repo = "vncdotool";
-    rev = "v${version}";
-    sha256 = "0h3ccr8zi7xpgn6hz43x1045x5l4bhha7py8x00g8bv6gaqlbwxn";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-m8msWa8uUuDEjEUlXHCgYi0HFPKXLVXpXLyuQ3quNbA=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/vulture/default.nix b/pkgs/development/python-modules/vulture/default.nix
index b56835032490..e3fcad870a95 100644
--- a/pkgs/development/python-modules/vulture/default.nix
+++ b/pkgs/development/python-modules/vulture/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "vulture";
-  version = "2.7";
+  version = "2.9.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Z/uAoBTtn9tZndRLuWy1QxEDKhBBBvwucG73ptrYgDI=";
+    hash = "sha256-tqKqYytv1RSIqO6sZQq0pQm7GgMugZQ4F6ii5qY6MLM=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/w3lib/default.nix b/pkgs/development/python-modules/w3lib/default.nix
index 08ce68fdd616..66e48a2b7f29 100644
--- a/pkgs/development/python-modules/w3lib/default.nix
+++ b/pkgs/development/python-modules/w3lib/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "w3lib";
-  version = "2.1.1";
+  version = "2.1.2";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-DhGY8bdFGVtrPdGkzWYBH7+C8wpNnauu4fnlyG8CAnQ=";
+    hash = "sha256-7Vt06ZfuoqvjwTIfkW40QUTujpBypvM0Y+6OV/hYpLE=";
   };
 
   nativeCheckInputs = [
diff --git a/pkgs/development/python-modules/wagtail-localize/default.nix b/pkgs/development/python-modules/wagtail-localize/default.nix
index 085eca293d11..29439bb2a2d1 100644
--- a/pkgs/development/python-modules/wagtail-localize/default.nix
+++ b/pkgs/development/python-modules/wagtail-localize/default.nix
@@ -16,7 +16,7 @@
 
 buildPythonPackage rec {
   pname = "wagtail-localize";
-  version = "1.5.1";
+  version = "1.5.2";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
     repo = pname;
     owner = "wagtail";
     rev = "refs/tags/v${version}";
-    hash = "sha256-RjJyx3sr69voJxa3lH8Nq/liZ3eMoTfZ4phykj7neZA=";
+    hash = "sha256-7r2FFfWGqjE3Z7wsdf6KwwbUZ+wXqOscsL/2CepSMLY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/wagtail/default.nix b/pkgs/development/python-modules/wagtail/default.nix
index 54c30dabc781..cc5fa6c5a9a0 100644
--- a/pkgs/development/python-modules/wagtail/default.nix
+++ b/pkgs/development/python-modules/wagtail/default.nix
@@ -24,14 +24,14 @@
 
 buildPythonPackage rec {
   pname = "wagtail";
-  version = "5.0.2";
+  version = "5.1.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-3r0h34el2zRF1l/94S7xTjBqJPWtSQFQvtVW8Mjq0rs=";
+    hash = "sha256-IR/wzXBZ+Win/EOFUDsg2AHB5otW9YMeCmpPxgCllD8=";
   };
 
   postPatch = ''
@@ -58,7 +58,7 @@ buildPythonPackage rec {
     requests
     telepath
     willow
-  ];
+  ] ++ willow.optional-dependencies.heif;
 
   # Tests are in separate derivation because they require a package that depends
   # on wagtail (wagtail-factories)
diff --git a/pkgs/development/python-modules/watchfiles/default.nix b/pkgs/development/python-modules/watchfiles/default.nix
index 1c61ab19c708..cb113420006b 100644
--- a/pkgs/development/python-modules/watchfiles/default.nix
+++ b/pkgs/development/python-modules/watchfiles/default.nix
@@ -6,13 +6,11 @@
 , fetchFromGitHub
 , rustPlatform
 , rustc
-, setuptools-rust
 , pythonOlder
 , dirty-equals
 , pytest-mock
 , pytest-timeout
 , pytestCheckHook
-, python
 , CoreServices
 , libiconv
 }:
@@ -73,6 +71,11 @@ buildPythonPackage rec {
     rm -rf watchfiles
   '';
 
+  disabledTests = [
+    #  BaseExceptionGroup: unhandled errors in a TaskGroup (1 sub-exception)
+    "test_awatch_interrupt_raise"
+  ];
+
   pythonImportsCheck = [
     "watchfiles"
   ];
diff --git a/pkgs/development/python-modules/watermark/default.nix b/pkgs/development/python-modules/watermark/default.nix
index 6cb717679d1a..29b600624e87 100644
--- a/pkgs/development/python-modules/watermark/default.nix
+++ b/pkgs/development/python-modules/watermark/default.nix
@@ -9,7 +9,7 @@
 
 buildPythonPackage rec {
   pname = "watermark";
-  version = "2.3.1";
+  version = "2.4.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -17,8 +17,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "rasbt";
     repo = pname;
-    rev = "refs/tags/${version}";
-    hash = "sha256-E3UxdGlxTcvkiKa3RoG9as6LybyW+QrCUZvA9VHwxlk=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-4/1Y7cdh1tF33jgPrqdxCGPcRnnxx+Wf8lyztF54Ck0=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/weaviate-client/default.nix b/pkgs/development/python-modules/weaviate-client/default.nix
index 3e56109bcbe3..3ba0e22f83a1 100644
--- a/pkgs/development/python-modules/weaviate-client/default.nix
+++ b/pkgs/development/python-modules/weaviate-client/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "weaviate-client";
-  version = "3.22.1";
+  version = "3.24.1";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-r/Yb0/XXTfIKYjKEQ+OqnIYNUzD9+xnE2N3ETLYEAy8=";
+    hash = "sha256-4HM1DCG9TcpcDqxd1dlftHQnjHFaryBB44LYa7dRisg=";
   };
 
   SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/webcolors/default.nix b/pkgs/development/python-modules/webcolors/default.nix
index 5ec245676a6a..7ee91e7ea2b4 100644
--- a/pkgs/development/python-modules/webcolors/default.nix
+++ b/pkgs/development/python-modules/webcolors/default.nix
@@ -3,20 +3,25 @@
 , fetchPypi
 , pythonOlder
 , unittestCheckHook
+, setuptools
 }:
 
 buildPythonPackage rec {
   pname = "webcolors";
-  version = "1.12";
-  format = "setuptools";
+  version = "1.13";
+  format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-FtBD06CP1qGxt+Pp5iZA0JeQ3OgNK91HkqF1s1/nlKk=";
+    hash = "sha256-wiW2dMg/qSO+k9I1MwzgMANz0CiFzvIyOIE7DVZoMEo=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+  ];
+
   nativeCheckInputs = [ unittestCheckHook ];
 
   unittestFlagsArray = [ "-s" "tests" ];
diff --git a/pkgs/development/python-modules/websocket-client/default.nix b/pkgs/development/python-modules/websocket-client/default.nix
index a2873a26f07d..26c27825f7bd 100644
--- a/pkgs/development/python-modules/websocket-client/default.nix
+++ b/pkgs/development/python-modules/websocket-client/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "websocket-client";
-  version = "1.5.1";
+  version = "1.6.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Pwnm2CMIklRxMhd/V1pOPnPP3wZSbiDMAqocO0cYTUA=";
+    hash = "sha256-Oq0l0xKEJmvPz9H9inQ/YygjBaNkuNCUikO9YGrMZS8=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/websockets/default.nix b/pkgs/development/python-modules/websockets/default.nix
index 98bc6cc863ca..ec6e429f5945 100644
--- a/pkgs/development/python-modules/websockets/default.nix
+++ b/pkgs/development/python-modules/websockets/default.nix
@@ -8,7 +8,7 @@
 
 buildPythonPackage rec {
   pname = "websockets";
-  version = "10.4";
+  version = "11.0.3";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
@@ -16,8 +16,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "aaugustin";
     repo = pname;
-    rev = version;
-    hash = "sha256-IylvnaS8cHatA+WMc5uY9E+l+52INqOMITU1VJPO2xY=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-RdkbIiZI/UYsWdnnl5gJPsnJ/6adfFtkiXC7MO/HwcI=";
   };
 
   patchPhase = ''
diff --git a/pkgs/development/python-modules/werkzeug/default.nix b/pkgs/development/python-modules/werkzeug/default.nix
index e5b6a93eae6d..db045e77c52f 100644
--- a/pkgs/development/python-modules/werkzeug/default.nix
+++ b/pkgs/development/python-modules/werkzeug/default.nix
@@ -3,6 +3,7 @@
 , buildPythonPackage
 , pythonOlder
 , fetchPypi
+, flit-core
 , watchdog
 , ephemeral-port-reserve
 , pytest-timeout
@@ -15,30 +16,37 @@
 
 buildPythonPackage rec {
   pname = "werkzeug";
-  version = "2.2.3";
-  format = "setuptools";
+  version = "2.3.7";
+  format = "pyproject";
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchPypi {
-    pname = "Werkzeug";
-    inherit version;
-    hash = "sha256-LhzMlBfU2jWLnebxdOOsCUOR6h1PvvLWZ4ZdgZ39Cv4=";
+    inherit pname version;
+    hash = "sha256-K4wORHtLnbzIXdl7butNy69si2w74L1lTiVVPgohV9g=";
   };
 
+  nativeBuildInputs = [
+    flit-core
+  ];
+
   propagatedBuildInputs = [
     markupsafe
-  ] ++ lib.optionals (!stdenv.isDarwin) [
-    # watchdog requires macos-sdk 10.13+
-    watchdog
   ];
 
+  passthru.optional-dependencies = {
+    watchdog = lib.optionals (!stdenv.isDarwin) [
+      # watchdog requires macos-sdk 10.13[
+      watchdog
+    ];
+  };
+
   nativeCheckInputs = [
     ephemeral-port-reserve
     pytest-timeout
     pytest-xprocess
     pytestCheckHook
-  ];
+  ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);
 
   disabledTests = lib.optionals stdenv.isDarwin [
     "test_get_machine_id"
diff --git a/pkgs/development/python-modules/widgetsnbextension/default.nix b/pkgs/development/python-modules/widgetsnbextension/default.nix
index a27ebf2ec589..679e19722f45 100644
--- a/pkgs/development/python-modules/widgetsnbextension/default.nix
+++ b/pkgs/development/python-modules/widgetsnbextension/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "widgetsnbextension";
-  version = "4.0.7";
+  version = "4.0.9";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-6mfBenzUrjWPj0bDswTEBpi8BCNzLj8nMyHuFBIyyL4=";
+    hash = "sha256-PB9eRtwRZt/UCkLWhealE5b9NP+Hh0Kj5HxvDMSio4U=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/willow/default.nix b/pkgs/development/python-modules/willow/default.nix
index f7030f7c874e..1787faa38905 100644
--- a/pkgs/development/python-modules/willow/default.nix
+++ b/pkgs/development/python-modules/willow/default.nix
@@ -1,34 +1,62 @@
 { lib
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
 , pythonOlder
 
+# build-system
+, flit-core
+
 # dependencies
 , filetype
-, defusedxml,
+, defusedxml
+
+# optional-dependencies
+, pillow-heif
+
+# tests
+, numpy
+, opencv4
+, pillow
+, pytestCheckHook
+, wand
 }:
 
 buildPythonPackage rec {
   pname = "willow";
-  version = "1.5.1";
-  format = "setuptools";
+  version = "1.6.2";
+  format = "pyproject";
 
   disabled = pythonOlder "2.7";
 
-  src = fetchPypi {
-    pname = "Willow";
-    inherit version;
-    hash = "sha256-t6SQkRATP9seIodZLgZzzCVeAobhzVNCfuaN8ckiDEw=";
+  src = fetchFromGitHub {
+    owner = "wagtail";
+    repo = "Willow";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-dW2FVN3/mBAhVQ094uBsnXzdyTRKgHUDx0SWLm3g374=";
   };
 
+  nativeBuildInputs = [
+    flit-core
+  ];
+
   propagatedBuildInputs = [
     filetype
     defusedxml
   ];
 
-  # Test data is not included
-  # https://github.com/torchbox/Willow/issues/34
-  doCheck = false;
+  passthru.optional-dependencies = {
+    heif = [
+      pillow-heif
+    ];
+  };
+
+  nativeCheckInputs = [
+    numpy
+    opencv4
+    pytestCheckHook
+    pillow
+    wand
+  ] ++ passthru.optional-dependencies.heif;
 
   meta = with lib; {
     description = "A Python image library that sits on top of Pillow, Wand and OpenCV";
diff --git a/pkgs/development/python-modules/wtf-peewee/default.nix b/pkgs/development/python-modules/wtf-peewee/default.nix
index 326a56461a45..d4e37b597681 100644
--- a/pkgs/development/python-modules/wtf-peewee/default.nix
+++ b/pkgs/development/python-modules/wtf-peewee/default.nix
@@ -1,7 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
+, setuptools
 , peewee
 , wtforms
 , python
@@ -9,19 +9,16 @@
 
 buildPythonPackage rec {
   pname = "wtf-peewee";
-  version = "3.0.3";
+  version = "3.0.4";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "faa953fe3f705d4f2b48f3c1a81c5c5a6a38f9ed1378c9a830e6efc1b0fccb15";
+    hash = "sha256-cTbYRdvAUTY86MPR33BH+nA6H/epR8sgHDgOBQ/TUkQ=";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "fix-wtforms3.patch";
-      url = "https://github.com/coleifer/wtf-peewee/commit/b1764f4474c73a9a2b34ae6b7db61274f5252a7f.patch";
-      sha256 = "0maz3fm9bi8p80nk9sdb34xq55xq8ihm51y7k0m8ck9aaypvwbig";
-    })
+  nativeBuildInputs = [
+    setuptools
   ];
 
   propagatedBuildInputs = [
@@ -30,7 +27,9 @@ buildPythonPackage rec {
   ];
 
   checkPhase = ''
+    runHook preCheck
     ${python.interpreter} runtests.py
+    runHook postCheck
   '';
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/xapp/default.nix b/pkgs/development/python-modules/xapp/default.nix
index 58de4e7124ad..8b8b795edda9 100644
--- a/pkgs/development/python-modules/xapp/default.nix
+++ b/pkgs/development/python-modules/xapp/default.nix
@@ -15,14 +15,14 @@
 
 buildPythonPackage rec {
   pname = "xapp";
-  version = "2.4.1";
+  version = "21";
 
   format = "other";
 
   src = fetchFromGitHub {
     owner = "linuxmint";
     repo = "python-xapp";
-    rev = version;
+    rev = "refs/tags/master.mint${version}";
     hash = "sha256-Kvhp+biZ+KK9FYma/8cUEaQCHPKMLjOO909kbyMLQ3o=";
   };
 
diff --git a/pkgs/development/python-modules/xarray/default.nix b/pkgs/development/python-modules/xarray/default.nix
index 45e79fdd89d0..12cefa0332aa 100644
--- a/pkgs/development/python-modules/xarray/default.nix
+++ b/pkgs/development/python-modules/xarray/default.nix
@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "xarray";
-  version = "2023.7.0";
+  version = "2023.8.0";
   format = "pyproject";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-2s4v2/G3/xhdnBImokv4PCrlLzJT2/6A4X0RYmANBVw=";
+    hash = "sha256-glxtZCAqcxpOSTIe3R6d+r9L4GgC8bjIo8AKPr/Izt8=";
   };
 
   env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
diff --git a/pkgs/development/python-modules/xdg/default.nix b/pkgs/development/python-modules/xdg/default.nix
index d5583200becb..f44d2e443566 100644
--- a/pkgs/development/python-modules/xdg/default.nix
+++ b/pkgs/development/python-modules/xdg/default.nix
@@ -5,7 +5,7 @@
 }:
 
 buildPythonPackage rec {
-  version = "5.1.1";
+  version = "6.0.0";
   pname = "xdg";
   disabled = isPy27;
   format = "pyproject";
@@ -13,8 +13,8 @@ buildPythonPackage rec {
   src = fetchFromGitHub {
     owner = "srstevenson";
     repo = pname;
-    rev = version;
-    hash = "sha256-z/Zvo2WGw9qA+M3Pt9r35DuxtuhL7/I75LlFEdDOJcc=";
+    rev = "refs/tags/${version}";
+    hash = "sha256-yVuruSKv99IZGNCpY9cKwAe6gJNAWjL+Lol2D1/0hiI=";
   };
 
   nativeBuildInputs = [ poetry-core ];
diff --git a/pkgs/development/python-modules/xformers/default.nix b/pkgs/development/python-modules/xformers/default.nix
index fd2e2e3567c4..0fa17ac6858a 100644
--- a/pkgs/development/python-modules/xformers/default.nix
+++ b/pkgs/development/python-modules/xformers/default.nix
@@ -27,7 +27,7 @@
 #, flash-attn
 }:
 let
-  version = "0.0.21";
+  version = "0.03";
 in
 buildPythonPackage {
   pname = "xformers";
@@ -39,8 +39,8 @@ buildPythonPackage {
   src = fetchFromGitHub {
     owner = "facebookresearch";
     repo = "xformers";
-    rev = "v${version}";
-    hash = "sha256-zYziynjLtqjPPHjDbruuuG9209y0Sh+wYUFHUj+QG2Y=";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-G8f7tny5B8SAQ6+2uOjhY7nD0uOT4sskIwtTdwivQXo=";
     fetchSubmodules = true;
   };
 
diff --git a/pkgs/development/python-modules/xxhash/default.nix b/pkgs/development/python-modules/xxhash/default.nix
index 9062026f742b..10afcbe83789 100644
--- a/pkgs/development/python-modules/xxhash/default.nix
+++ b/pkgs/development/python-modules/xxhash/default.nix
@@ -5,12 +5,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "3.2.0";
+  version = "3.3.0";
   pname = "xxhash";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-Gv1Hr4lVxdtzD2MK1TrnmM9/rgrLZM67PPlNNcR90Ig=";
+    hash = "sha256-w/njIrHr7r1E49nS2bEk4MVQwe9BvVUq/c3XGVFu5Bo=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/xyzservices/default.nix b/pkgs/development/python-modules/xyzservices/default.nix
index 5a03ed14fcbf..797242993f92 100644
--- a/pkgs/development/python-modules/xyzservices/default.nix
+++ b/pkgs/development/python-modules/xyzservices/default.nix
@@ -1,22 +1,28 @@
 { lib
 , buildPythonPackage
-, fetchFromGitHub
 , fetchPypi
 , mercantile
 , pytestCheckHook
 , requests
+, setuptools
+, setuptools-scm
 }:
 
 buildPythonPackage rec {
   pname = "xyzservices";
-  version = "2023.2.0";
-  format = "setuptools";
+  version = "2023.7.0";
+  format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-M0K7pBDXlBKQ7tDlii5arbD3uXhj7EKDsoPEBu5yOig=";
+    hash = "sha256-DskodCIn1vXUNn6ntFf8/tlDQp9N4pSbWwKoLN9VadY=";
   };
 
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+  ];
+
   disabledTests = [
     # requires network connections
     "test_free_providers"
diff --git a/pkgs/development/python-modules/yangson/default.nix b/pkgs/development/python-modules/yangson/default.nix
index 05d26bcd4859..00cdf026c46f 100644
--- a/pkgs/development/python-modules/yangson/default.nix
+++ b/pkgs/development/python-modules/yangson/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "yangson";
-  version = "1.4.18";
+  version = "1.4.19";
   format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-VMgx2MTiOoAw8tW8SckheN950JVbdWWSS3PWDNs0dT0=";
+    hash = "sha256-rYUxv3TEdyr2D3UEmmHcJJtlG6gXJnp1c2pez4H13SU=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/yark/default.nix b/pkgs/development/python-modules/yark/default.nix
index 8c171d9d74ae..9012efc8a81d 100644
--- a/pkgs/development/python-modules/yark/default.nix
+++ b/pkgs/development/python-modules/yark/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname = "yark";
-  version = "1.2.7";
+  version = "1.2.8";
 
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-8O4EpHb1fP/O/t6hS1K1ylSXNKBuiipo7wvEnUJODSw=";
+    hash = "sha256-FXgJ/y8qN7FkR7nhpNgPvUH/EQgw8cgRFqUA9KiJKKM=";
   };
 
   pythonRelaxDeps = [
diff --git a/pkgs/development/python-modules/zarr/default.nix b/pkgs/development/python-modules/zarr/default.nix
index 0f27248c688c..78610073af01 100644
--- a/pkgs/development/python-modules/zarr/default.nix
+++ b/pkgs/development/python-modules/zarr/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "zarr";
-  version = "2.16.0";
+  version = "2.16.1";
   format = "pyproject";
 
   disabled = pythonOlder "3.8";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-hONraVvaDs6lKvmGEnGYTLIqXIZGeZB7e5uj95toT34=";
+    hash = "sha256-QnbPS0plNDEELNU/8igrxNKSpoQkEeiFKZZFBPsHMoY=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/zict/default.nix b/pkgs/development/python-modules/zict/default.nix
index d1e7891eee52..4bd3e7692283 100644
--- a/pkgs/development/python-modules/zict/default.nix
+++ b/pkgs/development/python-modules/zict/default.nix
@@ -1,19 +1,36 @@
-{ lib, buildPythonPackage, fetchPypi
-, pytest, heapdict, pythonOlder }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytestCheckHook
+, pytest-asyncio
+, pytest-repeat
+, pytest-timeout
+, pythonOlder
+, setuptools
+}:
 
 buildPythonPackage rec {
   pname = "zict";
-  version = "2.2.0";
+  version = "3.0.0";
+  format = "pyproject";
+
+  disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-1zZsLiKTMUES3PJDIQhCime5J7AABWGf7vwxDRLYM/M=";
+    hash = "sha256-4yHiY7apeq/AeQw8+zwEZWtwZuZzjDf//MqV2APJ+6U=";
   };
 
-  disabled = pythonOlder "3.6";
+  nativeBuildInputs = [
+    setuptools
+  ];
 
-  buildInputs = [ pytest ];
-  propagatedBuildInputs = [ heapdict ];
+  nativeCheckInputs = [
+    pytest-asyncio
+    pytestCheckHook
+    pytest-repeat
+    pytest-timeout
+  ];
 
   meta = with lib; {
     description = "Mutable mapping tools.";
diff --git a/pkgs/development/python-modules/zope-deferredimport/default.nix b/pkgs/development/python-modules/zope-deferredimport/default.nix
index a2143171dc54..0c0209740332 100644
--- a/pkgs/development/python-modules/zope-deferredimport/default.nix
+++ b/pkgs/development/python-modules/zope-deferredimport/default.nix
@@ -7,12 +7,12 @@
 
 buildPythonPackage rec {
   pname = "zope-deferredimport";
-  version = "4.4";
+  version = "5.0";
 
   src = fetchPypi {
     pname = "zope.deferredimport";
     inherit version;
-    sha256 = "2ae3257256802787e52ad840032f39c1496d3ce0b7e11117f663420e4a4c9add";
+    sha256 = "sha256-Orvw4YwfF2WRTs0dQbVJ5NBFshso5AZfsMHeCtc2ssM=";
   };
 
   propagatedBuildInputs = [ zope-proxy ];
diff --git a/pkgs/development/python-modules/zope-testbrowser/default.nix b/pkgs/development/python-modules/zope-testbrowser/default.nix
index 59c6e676938e..15b3f74a4394 100644
--- a/pkgs/development/python-modules/zope-testbrowser/default.nix
+++ b/pkgs/development/python-modules/zope-testbrowser/default.nix
@@ -19,14 +19,14 @@
 
 buildPythonPackage rec {
   pname = "zope-testbrowser";
-  version = "5.6.1";
+  version = "6.0";
 
   format = "setuptools";
 
   src = fetchPypi {
     pname = "zope.testbrowser";
     inherit version;
-    sha256 = "035bf63d9f7244e885786c3327448a7d9fff521dba596429698b8474961b05e7";
+    sha256 = "sha256-RLd6XpA3q+3DZHai6j3H6XTWE85Sk913zAL4iO4x+ho=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/zopfli/default.nix b/pkgs/development/python-modules/zopfli/default.nix
index 97625a3e3c1c..c8ecd77730d8 100644
--- a/pkgs/development/python-modules/zopfli/default.nix
+++ b/pkgs/development/python-modules/zopfli/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "zopfli";
-  version = "0.2.2";
+  version = "0.2.3";
 
   disabled = pythonOlder "3.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1z1akqx3fjnwa75insch9p08hafikqdvqkj6mxv1k6fr81sxnj9d";
+    sha256 = "sha256-28mEG+3XNgQeteaYLNktqTvuFFdF9UIvN5X28ljNxu8=";
     extension = "zip";
   };
 
diff --git a/pkgs/development/python-modules/zstandard/default.nix b/pkgs/development/python-modules/zstandard/default.nix
index 2da5ae524bb3..2bc20be4d4ed 100644
--- a/pkgs/development/python-modules/zstandard/default.nix
+++ b/pkgs/development/python-modules/zstandard/default.nix
@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "zstandard";
-  version = "0.20.0";
+  version = "0.21.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-YT2q3XLHGxSIdCyvssOzgcOdDJu4xswVeqLV6kXMLvw=";
+    hash = "sha256-8I46ENAaJHh35MthqCoxnqdGw1ajeGVYvtJIHmxAVUY=";
   };
 
   propagatedNativeBuildInputs = [