diff options
Diffstat (limited to 'pkgs/applications')
23 files changed, 464 insertions, 315 deletions
diff --git a/pkgs/applications/audio/distrho/default.nix b/pkgs/applications/audio/distrho/default.nix index a6a7ad22fa1a..5c9211e7f3bb 100644 --- a/pkgs/applications/audio/distrho/default.nix +++ b/pkgs/applications/audio/distrho/default.nix @@ -1,13 +1,14 @@ -{ stdenv, fetchgit, alsaLib, fftwSinglePrec, freetype, libjack2 +{ stdenv, fetchFromGitHub, alsaLib, fftwSinglePrec, freetype, libjack2 , libxslt, lv2, pkgconfig, premake3, xorg, ladspa-sdk }: stdenv.mkDerivation rec { - name = "distrho-ports-unstable-2017-10-10"; + name = "distrho-ports-unstable-2018-01-01"; - src = fetchgit { - url = "https://github.com/DISTRHO/DISTRHO-Ports.git"; - rev = "e11e2b204c14b8e370a0bf5beafa5f162fedb8e9"; - sha256 = "1nd542iian9kr2ldaf7fkkgf900ryzqigks999d1jhms6p0amvfv"; + src = fetchFromGitHub { + owner = "DISTRHO"; + repo = "DISTRHO-Ports"; + rev = "b200e7409aa9f6612c4d948932f6ce6f0a087f5a"; + sha256 = "0672r0a9s6skzkxpjdraziwh5k8ivrfzvi4zcpkcg3zrv2hia2vz"; }; patchPhase = '' diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix index b6ead3c8f527..86faeeb05334 100644 --- a/pkgs/applications/editors/android-studio/default.nix +++ b/pkgs/applications/editors/android-studio/default.nix @@ -27,9 +27,9 @@ in rec { preview = mkStudio { pname = "android-studio-preview"; - version = "3.1.0.7"; # "Android Studio 3.1 Canary 8" - build = "173.4529993"; - sha256Hash = "0mfkzdxbrdqlfqqx83dr9ibkpjwjf54kka9qra9j31zqcmy8rd53"; + version = "3.1.0.8"; # "Android Studio 3.1 Canary 9" + build = "173.4559767"; + sha256Hash = "0wy3bqd4wvvcwlqcv06mwlqgc119pjpc102ix3yacqvki9qyi1r0"; meta = stable.meta // { description = "The Official IDE for Android (preview version)"; diff --git a/pkgs/applications/editors/moe/default.nix b/pkgs/applications/editors/moe/default.nix index a1506eb9d6cc..751b78ab674b 100644 --- a/pkgs/applications/editors/moe/default.nix +++ b/pkgs/applications/editors/moe/default.nix @@ -13,6 +13,12 @@ stdenv.mkDerivation rec { sha256 = "1wsfzy0iia0c89wnx1ilzw54wqcmlp2nz8mkpvc393z0zagrx48q"; }; + prePatch = '' + substituteInPlace window_vector.cc --replace \ + "insert( 0U, 1," \ + "insert( 0U, 1U," + ''; + nativeBuildInputs = [ lzip ]; buildInputs = [ ncurses ]; diff --git a/pkgs/applications/editors/vbindiff/default.nix b/pkgs/applications/editors/vbindiff/default.nix index 3a3a0d1a7812..8d3a5353c989 100644 --- a/pkgs/applications/editors/vbindiff/default.nix +++ b/pkgs/applications/editors/vbindiff/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "vbindiff-${version}"; - version = "3.0_beta4"; + version = "3.0_beta5"; buildInputs = [ ncurses ]; src = fetchurl { url = "https://www.cjmweb.net/vbindiff/${name}.tar.gz"; - sha256 = "0gcqy4ggp60qc6blq1q1gc90xmhip1m6yvvli4hdqlz9zn3mlpbx"; + sha256 = "1f1kj4jki08bnrwpzi663mjfkrx4wnfpzdfwd2qgijlkx5ysjkgh"; }; meta = { diff --git a/pkgs/applications/graphics/gthumb/default.nix b/pkgs/applications/graphics/gthumb/default.nix index d9e0f42e53e3..161e89151249 100644 --- a/pkgs/applications/graphics/gthumb/default.nix +++ b/pkgs/applications/graphics/gthumb/default.nix @@ -6,12 +6,12 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "gthumb"; - version = "${major}.3"; - major = "3.5"; + version = "${major}.0"; + major = "3.6"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${major}/${name}.tar.xz"; - sha256 = "0hka1b3l8mf94zsk7jff87wsb8bz4pj5pixjrs0w2j8jbsa9sggk"; + sha256 = "1zc7myvnzgq7dawjg03rqvwfad7p938m20f25sfhv65jsfq8n928"; }; nativeBuildInputs = [ pkgconfig wrapGAppsHook ]; diff --git a/pkgs/applications/graphics/meme/default.nix b/pkgs/applications/graphics/meme/default.nix new file mode 100644 index 000000000000..2fddc39e0d07 --- /dev/null +++ b/pkgs/applications/graphics/meme/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "meme-unstable-${version}"; + version = "2017-09-10"; + + owner = "nomad-software"; + repo = "meme"; + goPackagePath = "github.com/${owner}/${repo}"; + + src = fetchFromGitHub { + inherit owner repo; + rev = "a6521f2eecb0aac22937b0013747ed9cb40b81ea"; + sha256 = "1gbsv1d58ck6mj89q31s5b0ppw51ab76yqgz39jgwqnkidvzdfly"; + }; + + meta = with stdenv.lib; { + description = "A command line utility for creating image macro style memes"; + homepage = "https://github.com/nomad-software/meme"; + license = licenses.mit; + maintainers = [ maintainers.fgaz ]; + platforms = with platforms; linux ++ darwin; + }; +} diff --git a/pkgs/applications/misc/j4-dmenu-desktop/default.nix b/pkgs/applications/misc/j4-dmenu-desktop/default.nix index 6b4762c0de47..f24951624c58 100644 --- a/pkgs/applications/misc/j4-dmenu-desktop/default.nix +++ b/pkgs/applications/misc/j4-dmenu-desktop/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "j4-dmenu-desktop-${version}"; - version = "2.15"; + version = "2.16"; src = fetchFromGitHub { owner = "enkore"; repo = "j4-dmenu-desktop"; rev = "r${version}"; - sha256 = "1yn45i3hpim2hriaqkq7wmawwsmkynvy2xgz7dg6p5r0ikw5bn1r"; + sha256 = "0714cri8bwpimmiirhzrkbri4xi24k0za6i1aw94d3fnblk2dg9f"; }; postPatch = '' diff --git a/pkgs/applications/misc/styx/default.nix b/pkgs/applications/misc/styx/default.nix index 2cdf047a10fc..f9779beec0f4 100644 --- a/pkgs/applications/misc/styx/default.nix +++ b/pkgs/applications/misc/styx/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { name = "styx-${version}"; - version = "0.7.0"; + version = "0.7.1"; src = fetchFromGitHub { owner = "styx-static"; repo = "styx"; rev = "v${version}"; - sha256 = "044zpj92w96csaddf1qnnc2w2w9iq4b7rzlqqsqnd1s0a87lm1qd"; + sha256 = "01lklz7l9klqmmsncikwjnk3glzyz15c30118s82yd1chwpwhpfl"; }; server = "${caddy.bin}/bin/caddy"; diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix index e9032ee7675c..b0ce1bb73168 100644 --- a/pkgs/applications/networking/browsers/chromium/common.nix +++ b/pkgs/applications/networking/browsers/chromium/common.nix @@ -138,19 +138,14 @@ let # To enable ChromeCast, go to chrome://flags and set "Load Media Router Component Extension" to Enabled # Fixes Chromecast: https://bugs.chromium.org/p/chromium/issues/detail?id=734325 ./patches/fix_network_api_crash.patch - ] # As major versions are added, you can trawl the gentoo and arch repos at + # As major versions are added, you can trawl the gentoo and arch repos at # https://gitweb.gentoo.org/repo/gentoo.git/plain/www-client/chromium/ # https://git.archlinux.org/svntogit/packages.git/tree/trunk?h=packages/chromium # for updated patches and hints about build flags - ++ optionals (versionRange "63" "64") [ - ./patches/chromium-gcc5-r4.patch - (gentooPatch "chromium-gcc5-r5.patch" "0z7rggizzg85wfr8zhw0yfwd3q69lsh3yp297s939jgzp66cwwkw") - ./patches/include-math-for-round.patch + + # (gentooPatch "<patch>" "0000000000000000000000000000000000000000000000000000000000000000") ] ++ optionals (versionRange "64" "65") [ - ## This is a first guess on what patches are needed for 64 - # (gentooPatch "chromium-memcpy-r0.patch" "1d3vra59wjg2lva7ddv55ff6l57mk9k50llsplr0b7vxk0lh0ps5") (gentooPatch "chromium-cups-r0.patch" "0hyjlfh062c8h54j4b27y4dq5yzd4w6mxzywk3s02yf6cj3cbkrl") - # (gentooPatch "chromium-clang-r2.patch" "1lsqr7cbjsad5pyyp6kyrfmcgcqy2z2yzgp4zxwjq95fknrfi5a4") (gentooPatch "chromium-angle-r0.patch" "0izdrqwsyr48117dhvwdsk8c6dkrnq2njida1q4mb1lagvwbz7gc") ] ++ optional enableWideVine ./patches/widevine.patch; @@ -215,6 +210,7 @@ let proprietary_codecs = false; use_sysroot = false; use_gnome_keyring = gnomeKeyringSupport; + ## FIXME remove use_gconf after chromium 65 has become stable use_gconf = gnomeSupport; use_gio = gnomeSupport; enable_nacl = enableNaCl; diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix index b15bc16c89dd..3fe73c8669c8 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix @@ -1,18 +1,18 @@ # This file is autogenerated from update.sh in the same directory. { beta = { - sha256 = "1mkschqjdn3n3709qkxha1zs626vhh33dp80gi3h6hhk8w0gx4sb"; - sha256bin64 = "05hyfm9j127mprj2wjrq3m9qm4zp3bny40164vscr6vkfxvmjh03"; - version = "64.0.3282.71"; + sha256 = "09ris0aj743x3mh7q45z55byxwmw7h6klhibbcazb1axj85ahbil"; + sha256bin64 = "18833sqqfssjvcmf6v7wj9h9gsc07wr09cms5c0k7f8v9dqysc7r"; + version = "64.0.3282.119"; }; dev = { - sha256 = "1b7f1bs9i7dhrccssn5zk4s62sfpmkj8b4w6aq8g4jbyg7hw9pql"; - sha256bin64 = "0lp8m62p8h60hi8h5nskcjdh6k8vq4g00xbq5limg7d6pgc0vyyz"; - version = "65.0.3311.3"; + sha256 = "04vrcsvlanjljah3pbgfz49ygwr9i6zymr1a09kldrnykv770c5l"; + sha256bin64 = "016s8lh94i0m3zyld32vzqfw1c0s97sa143dyww7x26b2mp93lcc"; + version = "65.0.3322.3"; }; stable = { - sha256 = "139x3cbc5pa14x69493ic8i2ank12c9fwiq6pqm11aps88n6ri44"; - sha256bin64 = "03r97jg1fcb23k1xg5qnw5hp5p9m8anyx346nchbas63rfn439km"; - version = "63.0.3239.132"; + sha256 = "09ris0aj743x3mh7q45z55byxwmw7h6klhibbcazb1axj85ahbil"; + sha256bin64 = "18a61myi3wlrk9zr7jjad1zi8k0ls9cnl2nyhjibjlwiz3npwbm5"; + version = "64.0.3282.119"; }; } diff --git a/pkgs/applications/networking/browsers/google-chrome/default.nix b/pkgs/applications/networking/browsers/google-chrome/default.nix index b868c434e234..b1b1132f22b0 100644 --- a/pkgs/applications/networking/browsers/google-chrome/default.nix +++ b/pkgs/applications/networking/browsers/google-chrome/default.nix @@ -38,13 +38,12 @@ with stdenv.lib; -with chromium.upstream-info; - let opusWithCustomModes = libopus.override { withCustomModes = true; }; + version = chromium.upstream-info.version; gtk = if (versionAtLeast version "59.0.0.0") then gtk3 else gtk2; gnome = if (versionAtLeast version "59.0.0.0") then gnome3 else gnome2; @@ -68,7 +67,7 @@ in stdenv.mkDerivation rec { name = "google-chrome${suffix}-${version}"; - src = binary; + src = chromium.upstream-info.binary; buildInputs = [ patchelf diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix index 8f22045578d7..d64c7a20cb99 100644 --- a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix +++ b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix @@ -98,7 +98,7 @@ let fteLibPath = makeLibraryPath [ stdenv.cc.cc gmp ]; # Upstream source - version = "7.0.11"; + version = "7.5"; lang = "en-US"; @@ -108,7 +108,7 @@ let "https://github.com/TheTorProject/gettorbrowser/releases/download/v${version}/tor-browser-linux64-${version}_${lang}.tar.xz" "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz" ]; - sha256 = "0i42jxdka0sq8fp6lj64n0az6m4g72il9qhdn63p0h7y4204i2v4"; + sha256 = "1ia8qv5hj7zrrli5d9qf65s3rlrls0whrx3q96lw63x2gn05nwv7"; }; "i686-linux" = fetchurl { @@ -116,7 +116,7 @@ let "https://github.com/TheTorProject/gettorbrowser/releases/download/v${version}/tor-browser-linux32-${version}_${lang}.tar.xz" "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux32-${version}_${lang}.tar.xz" ]; - sha256 = "1p9s6wqghpkml662vnp5194i8gb9bkqxdr96fmw0fh305cyk25k0"; + sha256 = "1sw1n7jsagyl5cjs265x3k9jzh0j0yh767ixcy17vif5f9dfyzak"; }; }; in diff --git a/pkgs/applications/networking/instant-messengers/slack/default.nix b/pkgs/applications/networking/instant-messengers/slack/default.nix index a32623c1c848..b6f731ee6513 100644 --- a/pkgs/applications/networking/instant-messengers/slack/default.nix +++ b/pkgs/applications/networking/instant-messengers/slack/default.nix @@ -4,7 +4,7 @@ let - version = "3.0.0"; + version = "3.0.5"; rpath = stdenv.lib.makeLibraryPath [ alsaLib @@ -46,7 +46,7 @@ let if stdenv.system == "x86_64-linux" then fetchurl { url = "https://downloads.slack-edge.com/linux_releases/slack-desktop-${version}-amd64.deb"; - sha256 = "17hq31x9k03rvj2sdsdfj6j75v30yrywlsbca4d56a0qsdzysxkw"; + sha256 = "13im5m119cp5v0gvr1vpxjqskr8rvl6pii91b5x522wm7plfhj8s"; } else throw "Slack is not supported on ${stdenv.system}"; diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix index 656c4f03c0e8..0ae1777a839c 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix @@ -1,595 +1,595 @@ { - version = "52.5.2"; + version = "52.6.0"; sources = [ - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-x86_64/ar/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-x86_64/ar/thunderbird-52.6.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha512 = "637ca11b07a86b806ea274cf3cd9a47dc2d23a2700203c1ddfb25bac15bb4ed1eb4749f630021dd0f33f00c43539954d9fecc192d3582e752940ade0930422ef"; + sha512 = "fa4cc97701d7a44e2256149497a72a7057f3b677163b85029a9721fa03b4b518fa8c3564ad727824faf3c81242bc7dfe673f7fbbe1bb2b92aea16b779df8d6f5"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-x86_64/ast/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-x86_64/ast/thunderbird-52.6.0.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha512 = "78c6da93f60134c9b033f270d04b983713dd84ba6af8cd1c0529471dbd3c860085491bc54f0fd37a8373dd5164b064653d9ae6ab12f7748a9722aa61472ed7cb"; + sha512 = "f40ae6c5f72ad797b42c6ada1302eebf63b649bfa2d5838cea7371ad92de8e1eaaa79cd115993d96dd873bca996b12fb20c8f4f40ee4db144cc2bbd5a27ef182"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-x86_64/be/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-x86_64/be/thunderbird-52.6.0.tar.bz2"; locale = "be"; arch = "linux-x86_64"; - sha512 = "7081fddbc88cdd0280bb35c7f16c33f8935d639d91e2ed4258e344565ea6f27d1ed8f2b5daa5d2e861e92357ba65c4c4b05260fab83f0bfaf6e2fa44ab081fbb"; + sha512 = "768453738bda8b0040d3b4cb21b1695dacaa54cacac5ec3130d5e4ebeea4e0ad8303ff2860fe5cfe5915df951aabe2f8a069b979abdc8ab8eb161811d93a8558"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-x86_64/bg/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-x86_64/bg/thunderbird-52.6.0.tar.bz2"; locale = "bg"; arch = "linux-x86_64"; - sha512 = "d5d21dfea54ac7c75c515cd95f0140a21451a3b2c533cc95f0a519a13b950e01c6f1d17e2fdae3610b46fef7450e1d816158a71ae37e8813d8b9dbbde2fbb4e1"; + sha512 = "dbe67671831f90f739a7af794578270f1177ce7e54727c78e6b74d6bc400ca3cff2ed4174b5b38b73ad1ebab0d9d0df34fd6e3ee769cf96e99f4fd84ff69d018"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-x86_64/bn-BD/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-x86_64/bn-BD/thunderbird-52.6.0.tar.bz2"; locale = "bn-BD"; arch = "linux-x86_64"; - sha512 = "c59b5b7381ce8fc65018bd70dce55488b12915d2c9fab7421433d7836cde95a409c2f5206323581bcf7af08b90e7ce8eb3c55b0a4f660734d3e159077ba60374"; + sha512 = "4d7aa1a03c1ec122150611270502fc209406703f0081e4e6ed212d07b327adc67c49db2891b1b62799c48218935200c5f671615a159a900f4d838250ab578798"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-x86_64/br/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-x86_64/br/thunderbird-52.6.0.tar.bz2"; locale = "br"; arch = "linux-x86_64"; - sha512 = "f3d5bea008f0849dc8834d51b6ba0529c2f803e5b059582076baf016fd9a02288d57851e1073c1df3f79f4fdb0f72ca8c707d25f75109d6b33ed60353180e80c"; + sha512 = "9e229670bb1a4263a1922b5c4d6329209d95aed8f92264977c8c9d1de81c89440666602fad19b686fe214e8847e305d531046fc00a77347393d3d38be31f7f1e"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-x86_64/ca/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-x86_64/ca/thunderbird-52.6.0.tar.bz2"; locale = "ca"; arch = "linux-x86_64"; - sha512 = "64d024e4c696cffd4d97566411f7412ae16e98f169101bd36e87efb027555bc163f38ea1898b29a772fe31e1667dd69cc5eb19a96e04982b01b0de3975654292"; 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+ sha512 = "9bbaf000fd2c1fe28f0f64c31c7736a2595399788498ae8be8fdac8dabc709efeacd8fb1f6ae8a095c130ff7620e1b7c6e909959b9c724b7bde736049664357c"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/sq/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/sq/thunderbird-52.6.0.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha512 = "f2dd5958774c81710aa59d7c9cf8543c86d82cd21da16b13ad1580cb2680df5caf973cf28a505fb994ad809264deeceea8806641fa27b9df5a7f26c725030515"; + sha512 = "6f8d71fa87777b11f5ebf14c6811ce9a0c2c380db5b7f3fe774219cc60bea6d4f59de8a3dd193d855725c3a0e5470b36dc0538f94539d637be14de5d8e480c7b"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/sr/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/sr/thunderbird-52.6.0.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha512 = "47a96a821fb825b6624262bbc0138027b842a9a69985af8903a7bfd435f6cbd3211e382899f3cc989cf716759aad927a8be22b2500f42f75362cfad09dbe67fe"; + sha512 = "0bbcd2a98f767a8836d054a97c797a0ea7eac5c08fed9177189474e47e8dc50d395735c0eaf8c6e839ac608084c6e533a3b20fda5e69ad74ada53636f1181359"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/sv-SE/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/sv-SE/thunderbird-52.6.0.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha512 = "978c8c41034137361663f2b12818477baac0e795e4c1ca7f7a013a8e1bb68534ef2a8a9d73e31c1ded7461bc5dc6298fc628dc6190b3657ce415f9687a3ed85e"; + sha512 = "22cc597657e44124162a6b8693022bd4086e3b4e0f9e42342c997bd333e1182163f0ca0c67d91cbb5e18c45605c877eb69d00372c86a9378ed2e7846547f3964"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/ta-LK/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/ta-LK/thunderbird-52.6.0.tar.bz2"; locale = "ta-LK"; arch = "linux-i686"; - sha512 = "970405c59d2589e49c53f0ab37e959c6f3b94bac41929ac6d5776c7b78b91bc0f8a6c1acee1557338b76bb8fc2a9f62f179a0ad10a0a8c984254d39577402556"; + sha512 = "902832bf66b2efd39cf038e9361bf0ee8f9682e73a42895ccf6bb637eeabb8d4d5e8b3b3d28bfa52e537ad1babee6bbb8d033c538a61880920ace6a4a7cadf95"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/tr/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/tr/thunderbird-52.6.0.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha512 = "cec76a997708b5339d5e49baea40125226f4bd708fa57f43f7812e2c7be686515986b90ab6ee525dadcaccbd9b9ea2c961e1a645b2c9634062e3e0c9c00ce2dc"; + sha512 = "70dbb015aa4acf35d5cba0e9d8916bed2603c7e44574c98e98e56edfb68db3ab572402fda5c809d838c51a2e3f135cd3b86f2dde44acd2e1ae2f12cecc276655"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/uk/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/uk/thunderbird-52.6.0.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha512 = "be710c5a5d28b34136ad72456ab9893d7c31dc0f3eea8cfc38d70169c37df5c96fb3aa18b72555e081115d0791f3a634325da191ac004ffc6a38d1412e140e95"; + sha512 = "9fd85a4f4366caea3409cca47df70d2f028c7d85c248ebbe5e7e92005d98d45947639fae2aac8a145e4cad12cc92e368b9f86de4623a7d1a35e0485fb35cff97"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/vi/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/vi/thunderbird-52.6.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha512 = "7d1f59f1fd78609700b6d6246087b88c5190139c79e7e60f2eaba91908ff0afbac0bce0e2a60594cda0800cf68ab0b5568702e0cfcfd1718e4cf46a88f20bc01"; + sha512 = "205b22a39b795946f019cbb9e8c1813a0ca9f59551c9ea30c661fbe43bbf1d87069dd3992e71c83226b2559cdb4db2186b37120c847367b6a4e1b16aba24510f"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/zh-CN/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/zh-CN/thunderbird-52.6.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha512 = "5763d93646a83b8a88e8c4b1c1c72101831f72323b600d576619330e2cf77ac7a9dc668aef5ef59188e0f467db900d1d8f3c2ef299f422f83de51f53519c70be"; + sha512 = "d1a9247b1db70ddba4f0cf80af7b8606e6bf006b31d3e771a4047dd7ccd121114bab900c38c02f36c4b60636caae75047f153bafd06aacf1b546c3d8af01806a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.5.2/linux-i686/zh-TW/thunderbird-52.5.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.6.0/linux-i686/zh-TW/thunderbird-52.6.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha512 = "cd593b08ed5f31dd89b44e9b79b1db324c51facf63e9d9c0c2ad847b9cc13a0548e831a87078c9c0ae910512c4855e6f3ae22d1c40189e082ff6ff26224c35b4"; + sha512 = "a92b42e7e1869ad91d8343072d508df6bb8e67ddf7d929d4911457c5bba04fc1ec7d3218685954a4ded7ecf819bfbef975813fb2bbb9d1da60444b83f1f0fdb9"; } ]; } diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix index 720b20e71290..bfbd97001973 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix @@ -22,11 +22,11 @@ let wrapperTool = if enableGTK3 then wrapGAppsHook else makeWrapper; in stdenv.mkDerivation rec { name = "thunderbird-${version}"; - version = "52.5.2"; + version = "52.6.0"; src = fetchurl { url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz"; - sha512 = "d626d3d37959539b15b5d2ae4a580fcc160380974bfc1a69a1fc8ff2435932e90a69fa386d5ecb6721d9154603c6b7d063e3368f6f995fea057eb593c06ef4ff"; + sha512 = "80742c95ed61d1cb2e72b71bb23bdd211a40240ab4393e9f028a38f902547372084a8f56445e2394484be088a7b9801405f3d6618fb2742601cc968bf34427f0"; }; # New sed no longer tolerates this mistake. diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix index a2a40f0acc80..13cb407391c0 100644 --- a/pkgs/applications/science/biology/igv/default.nix +++ b/pkgs/applications/science/biology/igv/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "igv-${version}"; - version = "2.3.98"; + version = "2.4.6"; src = fetchurl { - url = "http://data.broadinstitute.org/igv/projects/downloads/IGV_${version}.zip"; - sha256 = "1bjdsvx8jsbcry6v7yfclh3vrlsvaw38f3s9587lklj63zj638l2"; + url = "http://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_${version}.zip"; + sha256 = "00p9xhfn6snzm31q9l3dxccsj7rhlci8n3pgpy3k67q91mi2hkna"; }; buildInputs = [ unzip jre ]; diff --git a/pkgs/applications/science/biology/kallisto/default.nix b/pkgs/applications/science/biology/kallisto/default.nix new file mode 100644 index 000000000000..d80ffea9a780 --- /dev/null +++ b/pkgs/applications/science/biology/kallisto/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }: + +stdenv.mkDerivation rec { + name = "kallisto-${version}"; + version = "0.43.1"; + + src = fetchFromGitHub { + repo = "kallisto"; + owner = "pachterlab"; + rev = "v${version}"; + sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz"; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ hdf5 zlib ]; + + meta = with stdenv.lib; { + description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data"; + homepage = https://pachterlab.github.io/kallisto; + license = licenses.bsd2; + platforms = platforms.linux; + maintainers = [ maintainers.arcadio ]; + }; +} diff --git a/pkgs/applications/science/math/sage/default.nix b/pkgs/applications/science/math/sage/default.nix index 24dc4436b0fd..686e93b5d5e2 100644 --- a/pkgs/applications/science/math/sage/default.nix +++ b/pkgs/applications/science/math/sage/default.nix @@ -18,6 +18,7 @@ # - https://git.archlinux.org/svntogit/community.git/tree/trunk?h=packages/sagemath { stdenv +, bash , fetchurl , perl , gfortran @@ -26,13 +27,17 @@ , gettext , which , texlive +, texinfo , hevea }: stdenv.mkDerivation rec { - version = "8.0"; + version = "8.1"; name = "sage-${version}"; + # Modified version of patchShebangs that patches to the sage-internal version if possible + # and falls back to the system version if not. + patchSageShebangs = ./patchSageShebangs.sh; src = fetchurl { # Note that the source is *not* fetched from github, since that doesn't # the upstream folder with all the source tarballs of the spkgs. @@ -70,11 +75,12 @@ stdenv.mkDerivation rec { "http://www-ftp.lip6.fr/pub/math/sagemath/src/sage-${version}.tar.gz" "http://ftp.ntua.gr/pub/sagemath/src/sage-${version}.tar.gz" ]; - sha256 = "1a9rhb8jby6fdqa2s7n2fl9jwqqlsl7qz7dbpbwvg6jwlrvni7fg"; + sha256 = "1cpcs1mr0yii64s152xmxyd450bfzjb22jjj0zh9y3n6g9alzpyq"; }; postPatch = '' substituteAllInPlace src/bin/sage-env + bash=${bash} substituteAllInPlace build/bin/sage-spkg ''; installPhase = '' @@ -84,14 +90,16 @@ stdenv.mkDerivation rec { outputs = [ "out" "doc" ]; buildInputs = [ + bash # needed for the build perl # needed for the build python # needed for the build - gfortran # needed to build giac + gfortran # needed to build giac, openblas autoreconfHook # needed to configure sage with prefix gettext # needed to build the singular spkg hevea # needed to build the docs of the giac spkg which # needed in configure of mpir # needed to build the docs of the giac spkg + texinfo # needed to build maxima (texlive.combine { inherit (texlive) scheme-basic collection-pstricks # needed by giac @@ -102,18 +110,22 @@ stdenv.mkDerivation rec { }) ]; + nativeBuildInputs = [ gfortran perl which ]; + patches = [ # fix usages of /bin/rm ./spkg-singular.patch # help python find the crypt library - ./spkg-python2.patch - ./spkg-python3.patch + # patches python3 and indirectly python2, since those installation files are symlinked + ./spkg-python.patch # fix usages of /usr/bin/perl ./spkg-git.patch # fix usages of /bin/cp and add necessary argument to function call ./spkg-giac.patch # environment ./env.patch + # adjust wrapper shebang and patch shebangs after each spkg build + ./shebangs.patch ]; enableParallelBuilding = true; @@ -144,7 +156,14 @@ stdenv.mkDerivation rec { preBuild = '' # TODO do this conditionally export SAGE_SPKG_INSTALL_DOCS='no' - patchShebangs build + # symlink python to make sure the shebangs are patched to the sage path + # while still being able to use python before building it + # (this is important because otherwise sage will try to install python + # packages globally later on) + ln -s "${python}/bin/python2" $out/bin/python2 + ln -s "$out/bin/python2" $out/bin/python + touch $out/bin/python3 + bash $patchSageShebangs . ''; postBuild = '' @@ -153,9 +172,12 @@ stdenv.mkDerivation rec { rm -rf "$out/sage-root/src/.git" rm -r "$out/sage-root/logs" # Fix dependency cycle between out and doc + rm -f "$out/sage-root/config.log" rm -f "$out/sage-root/config.status" rm -f "$out/sage-root/build/make/Makefile-auto" rm -f "$out/sage-home/.sage/gap/libgap-workspace-"* + # Make sure all shebangs are properly patched + bash $patchSageShebangs $out ''; # TODO there are some doctest failures, which seem harmless. diff --git a/pkgs/applications/science/math/sage/patchSageShebangs.sh b/pkgs/applications/science/math/sage/patchSageShebangs.sh new file mode 100644 index 000000000000..6ddf93af0114 --- /dev/null +++ b/pkgs/applications/science/math/sage/patchSageShebangs.sh @@ -0,0 +1,51 @@ +# This is a slightly modified version of nix's default patchShebangs + +dir="$1" + +echo "patching sage internal script interpreter paths in $( readlink -f "$dir")" + +find "$dir" -type f -perm -0100 | while read f; do + if [ "$(head -1 "$f" | head -c+2)" != '#!' ]; then + # missing shebang => not a script + continue + fi + + oldInterpreterLine=$(head -1 "$f" | tail -c+3) + read -r oldPath arg0 args <<< "$oldInterpreterLine" + + if $(echo "$oldPath" | grep -q "/bin/env$"); then + # Check for unsupported 'env' functionality: + # - options: something starting with a '-' + # - environment variables: foo=bar + if $(echo "$arg0" | grep -q -- "^-.*\|.*=.*"); then + echo "unsupported interpreter directive \"$oldInterpreterLine\" (set dontPatchShebangs=1 and handle shebang patching yourself)" + exit 1 + fi + executable="$arg0" + else + if [ "$oldPath" = "" ]; then + # If no interpreter is specified linux will use /bin/sh. Set + # oldpath="/bin/sh" so that we get /nix/store/.../sh. + oldPath="/bin/sh" + fi + executable="$(basename "$oldPath")" + args="$arg0 $args" + fi + + newPath="$(echo "$out/bin/$executable $args" | sed 's/[[:space:]]*$//')" + if [[ ! -x "$newPath" ]] ; then + newPath="$(command -v "$executable" || true)" + fi + + # Strip trailing whitespace introduced when no arguments are present + newInterpreterLine="$(echo "$newPath $args" | sed 's/[[:space:]]*$//')" + + if [ -n "$oldPath" -a "${oldPath:0:${#NIX_STORE}}" != "$NIX_STORE" ]; then + if [ -n "$newPath" -a "$newPath" != "$oldPath" ]; then + echo "$f: sage interpreter directive changed from \"$oldInterpreterLine\" to \"$newInterpreterLine\"" + # escape the escape chars so that sed doesn't interpret them + escapedInterpreterLine=$(echo "$newInterpreterLine" | sed 's|\\|\\\\|g') + sed -i -e "1 s|.*|#\!$escapedInterpreterLine|" "$f" + fi + fi +done diff --git a/pkgs/applications/science/math/sage/shebangs.patch b/pkgs/applications/science/math/sage/shebangs.patch new file mode 100644 index 000000000000..96ed5a4bc6c3 --- /dev/null +++ b/pkgs/applications/science/math/sage/shebangs.patch @@ -0,0 +1,36 @@ +diff --git a/build/bin/sage-spkg b/build/bin/sage-spkg +index 83e61a7e0d..942ba206c7 100755 +--- a/build/bin/sage-spkg ++++ b/build/bin/sage-spkg +@@ -648,8 +648,12 @@ if ! sage-apply-patches; then + error_msg "Error applying patches" + exit 1 + fi ++ ++@bash@/bin/bash @patchSageShebangs@ . ++ + cd .. + ++ + ################################################################## + # The package has been extracted, prepare for installation + ################################################################## +@@ -671,7 +675,7 @@ write_script_wrapper() { + local tmpscript="$(dirname "$script")/.tmp-${script##*/}" + + cat > "$tmpscript" <<__EOF__ +-#!/usr/bin/env bash ++#! @bash@/bin/bash + + export SAGE_ROOT="$SAGE_ROOT" + export SAGE_SRC="$SAGE_SRC" +@@ -833,6 +837,9 @@ if [ "$UNAME" = "CYGWIN" ]; then + sage-rebase.sh "$SAGE_LOCAL" 2>/dev/null + fi + ++@bash@/bin/bash @patchSageShebangs@ . ++@bash@/bin/bash @patchSageShebangs@ "$out/bin" ++ + echo "Successfully installed $PKG_NAME" + + if [ "$SAGE_CHECK" = "yes" ]; then diff --git a/pkgs/applications/science/math/sage/spkg-python.patch b/pkgs/applications/science/math/sage/spkg-python.patch new file mode 100644 index 000000000000..e39981b6552a --- /dev/null +++ b/pkgs/applications/science/math/sage/spkg-python.patch @@ -0,0 +1,13 @@ +diff --git a/build/pkgs/python3/spkg-build b/build/pkgs/python3/spkg-build +index 56db087ae5..b450703c5f 100644 +--- a/build/pkgs/python3/spkg-build ++++ b/build/pkgs/python3/spkg-build +@@ -27,6 +27,8 @@ fi + export EXTRA_CFLAGS="`testcflags.sh -Wno-unused` $CFLAGS" + unset CFLAGS + ++export LDFLAGS="$LDFLAGS -lcrypt" ++ + if [ "$UNAME" = Darwin ]; then + PYTHON_CONFIGURE="--disable-toolbox-glue $PYTHON_CONFIGURE" + diff --git a/pkgs/applications/science/math/sage/spkg-python2.patch b/pkgs/applications/science/math/sage/spkg-python2.patch deleted file mode 100644 index 5d92d3f8beaf..000000000000 --- a/pkgs/applications/science/math/sage/spkg-python2.patch +++ /dev/null @@ -1,12 +0,0 @@ ---- old/build/pkgs/python2/spkg-install 2017-07-21 14:10:00.000000000 -0500 -+++ new/build/pkgs/python2/spkg-install 2017-10-15 11:26:54.823134067 -0500 -@@ -22,6 +22,9 @@ - - cd src - -+LDFLAGS="-lcrypt $LDFLAGS" -+export LDFLAGS -+ - if [ "$SAGE_DEBUG" = "yes" ]; then - echo "Building Python with pydebug" - PYTHON_CONFIGURE="$PYTHON_CONFIGURE --with-pydebug" diff --git a/pkgs/applications/science/math/sage/spkg-python3.patch b/pkgs/applications/science/math/sage/spkg-python3.patch deleted file mode 100644 index 51827fd11be0..000000000000 --- a/pkgs/applications/science/math/sage/spkg-python3.patch +++ /dev/null @@ -1,12 +0,0 @@ ---- old/build/pkgs/python3/spkg-install 2017-07-21 14:10:00.000000000 -0500 -+++ new/build/pkgs/python3/spkg-install 2017-10-15 13:11:17.769261404 -0500 -@@ -22,6 +22,9 @@ - - cd src - -+LDFLAGS="-lcrypt $LDFLAGS" -+export LDFLAGS -+ - if [ "$SAGE_DEBUG" = "yes" ]; then - echo "Building Python with pydebug" - PYTHON_CONFIGURE="$PYTHON_CONFIGURE --with-pydebug" |