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-rw-r--r--pkgs/applications/science/logic/hol_light/Makefile.patch13
-rw-r--r--pkgs/applications/science/logic/hol_light/default.nix2
-rw-r--r--pkgs/applications/science/math/mathematica/9.nix4
-rw-r--r--pkgs/applications/science/math/mathematica/default.nix4
-rw-r--r--pkgs/applications/science/math/scilab/default.nix10
-rw-r--r--pkgs/applications/science/misc/openmodelica/default.nix4
6 files changed, 24 insertions, 13 deletions
diff --git a/pkgs/applications/science/logic/hol_light/Makefile.patch b/pkgs/applications/science/logic/hol_light/Makefile.patch
new file mode 100644
index 000000000000..2cb05f27a4f6
--- /dev/null
+++ b/pkgs/applications/science/logic/hol_light/Makefile.patch
@@ -0,0 +1,13 @@
+Index: Makefile
+===================================================================
+--- a/Makefile	(révision 199)
++++ b/Makefile	(copie de travail)
+@@ -59,7 +59,7 @@
+              then cp pa_j_3.1x_6.02.1.ml pa_j.ml; \
+              else if test ${CAMLP5_VERSION} = "6.02.2" -o ${CAMLP5_VERSION} = "6.02.3" -o ${CAMLP5_VERSION} = "6.03" -o ${CAMLP5_VERSION} = "6.04" -o ${CAMLP5_VERSION} = "6.05" -o ${CAMLP5_VERSION} = "6.06" ; \
+                   then cp pa_j_3.1x_6.02.2.ml pa_j.ml; \
+-                  else if test ${CAMLP5_VERSION} = "6.06" -o ${CAMLP5_VERSION} = "6.07" -o ${CAMLP5_VERSION} = "6.08" -o ${CAMLP5_VERSION} = "6.09" -o ${CAMLP5_VERSION} = "6.10" -o ${CAMLP5_VERSION} = "6.11" -o ${CAMLP5_VERSION} = "6.12" ; \
++                  else if test ${CAMLP5_VERSION} = "6.06" -o ${CAMLP5_VERSION} = "6.07" -o ${CAMLP5_VERSION} = "6.08" -o ${CAMLP5_VERSION} = "6.09" -o ${CAMLP5_VERSION} = "6.10" -o ${CAMLP5_VERSION} = "6.11" -o ${CAMLP5_VERSION} = "6.12" -o ${CAMLP5_VERSION} = "6.13" -o ${CAMLP5_VERSION} = "6.14" ; \
+                        then cp pa_j_3.1x_6.11.ml pa_j.ml; \
+                        else cp pa_j_3.1x_${CAMLP5_BINARY_VERSION}.xx.ml pa_j.ml; \
+                        fi \
diff --git a/pkgs/applications/science/logic/hol_light/default.nix b/pkgs/applications/science/logic/hol_light/default.nix
index 7653e137e260..8311ac466543 100644
--- a/pkgs/applications/science/logic/hol_light/default.nix
+++ b/pkgs/applications/science/logic/hol_light/default.nix
@@ -20,6 +20,8 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ ocaml camlp5 ];
 
+  patches = [ ./Makefile.patch ];
+
   installPhase = ''
     mkdir -p "$out/lib/hol_light" "$out/bin"
     cp -a  . $out/lib/hol_light
diff --git a/pkgs/applications/science/math/mathematica/9.nix b/pkgs/applications/science/math/mathematica/9.nix
index 3c7f758d91bc..7573b8955b19 100644
--- a/pkgs/applications/science/math/mathematica/9.nix
+++ b/pkgs/applications/science/math/mathematica/9.nix
@@ -12,7 +12,7 @@
 , opencv
 , openssl
 , unixODBC
-, xlibs
+, xorg
 , zlib
 }:
 
@@ -51,7 +51,7 @@ stdenv.mkDerivation rec {
     opencv
     openssl
     unixODBC
-  ] ++ (with xlibs; [
+  ] ++ (with xorg; [
     libX11
     libXext
     libXtst
diff --git a/pkgs/applications/science/math/mathematica/default.nix b/pkgs/applications/science/math/mathematica/default.nix
index 39f2409a987c..233323fceef9 100644
--- a/pkgs/applications/science/math/mathematica/default.nix
+++ b/pkgs/applications/science/math/mathematica/default.nix
@@ -12,7 +12,7 @@
 , opencv
 , openssl
 , unixODBC
-, xlibs
+, xorg
 , zlib
 , libxml2
 , libuuid
@@ -56,7 +56,7 @@ stdenv.mkDerivation rec {
     unixODBC
     libxml2
     libuuid
-  ] ++ (with xlibs; [
+  ] ++ (with xorg; [
     libX11
     libXext
     libXtst
diff --git a/pkgs/applications/science/math/scilab/default.nix b/pkgs/applications/science/math/scilab/default.nix
index bbb34e08c468..8482bd6fe94b 100644
--- a/pkgs/applications/science/math/scilab/default.nix
+++ b/pkgs/applications/science/math/scilab/default.nix
@@ -8,7 +8,7 @@
 , ocaml, withOCaml ? false
 #, withJava ? false
 #, atlasMath, withAtlas ? false
-, x11, withX ? false
+, xlibsWrapper, withX ? false
 }:
 
 stdenv.mkDerivation rec {
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
   buildInputs = [gfortran ncurses]
   ++ lib.optionals withGtk [gtk]
   ++ lib.optionals withOCaml [ocaml]
-  ++ lib.optionals withX [x11]
+  ++ lib.optional withX xlibsWrapper
   ;
 
 
@@ -58,11 +58,7 @@ stdenv.mkDerivation rec {
   # do not compile Java interface
   + " --without-java"
   # use the X Window System
-  + (lib.optionalString withX "
-      --with-x
-      --x-libraries=${x11}/lib
-      --x-includes=${x11}/include
-    ")
+  + lib.optionalString withX "--with-x"
   ;
 
   makeFlags = "all";
diff --git a/pkgs/applications/science/misc/openmodelica/default.nix b/pkgs/applications/science/misc/openmodelica/default.nix
index 3741187067dd..5357ff09b21d 100644
--- a/pkgs/applications/science/misc/openmodelica/default.nix
+++ b/pkgs/applications/science/misc/openmodelica/default.nix
@@ -1,7 +1,7 @@
 {stdenv, fetchgit, fetchsvn, autoconf, automake, libtool, gfortran, clang, cmake, gnumake,
 hwloc, jre, liblapack, blas, hdf5, expat, ncurses, readline, qt4, webkit, which,
 lp_solve, omniorb, sqlite, libatomic_ops, pkgconfig, file, gettext, flex, bison,
-doxygen, boost, openscenegraph, gnome, pangox_compat, xlibs, git, bash, gtk, makeWrapper }:
+doxygen, boost, openscenegraph, gnome, pangox_compat, xorg, git, bash, gtk, makeWrapper }:
 
 let
 
@@ -17,7 +17,7 @@ stdenv.mkDerivation {
   buildInputs = [autoconf cmake automake libtool gfortran clang gnumake
     hwloc jre liblapack blas hdf5 expat ncurses readline qt4 webkit which
     lp_solve omniorb sqlite libatomic_ops pkgconfig file gettext flex bison
-    doxygen boost openscenegraph gnome.gtkglext pangox_compat xlibs.libXmu
+    doxygen boost openscenegraph gnome.gtkglext pangox_compat xorg.libXmu
     git gtk makeWrapper];
 
   patchPhase = ''