diff options
Diffstat (limited to 'pkgs/applications/science/math')
3 files changed, 22 insertions, 1 deletions
diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index a791f9a57727..bc0f7ed88316 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -4,6 +4,9 @@ , curl, Cocoa, Foundation, libobjc, libcxx, tzdata, fetchpatch , withRecommendedPackages ? true , enableStrictBarrier ? false +# R as of writing does not support outputting both .so and .a files; it outputs: +# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored +, static ? false , javaSupport ? (!stdenv.hostPlatform.isAarch32 && !stdenv.hostPlatform.isAarch64) }: @@ -33,6 +36,8 @@ stdenv.mkDerivation rec { substituteInPlace configure --replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib" ''; + dontDisableStatic = static; + preConfigure = '' configureFlagsArray=( --disable-lto @@ -47,7 +52,7 @@ stdenv.mkDerivation rec { --with-libtiff --with-ICU ${stdenv.lib.optionalString enableStrictBarrier "--enable-strict-barrier"} - --enable-R-shlib + ${if static then "--enable-R-static-lib" else "--enable-R-shlib"} AR=$(type -p ar) AWK=$(type -p gawk) CC=$(type -p cc) diff --git a/pkgs/applications/science/math/sage/patches/ignore-cmp-deprecation.patch b/pkgs/applications/science/math/sage/patches/ignore-cmp-deprecation.patch new file mode 100644 index 000000000000..5c1073e13e96 --- /dev/null +++ b/pkgs/applications/science/math/sage/patches/ignore-cmp-deprecation.patch @@ -0,0 +1,13 @@ +diff --git a/src/sage/tests/cmdline.py b/src/sage/tests/cmdline.py +index bd6b76ab82..f8340a8c66 100644 +--- a/src/sage/tests/cmdline.py ++++ b/src/sage/tests/cmdline.py +@@ -872,7 +872,7 @@ def test_executable(args, input="", timeout=100.0, **kwds): + sage: with open(input, 'w') as F: + ....: _ = F.write(s) + sage: test_executable(["sage", "--rst2sws", input, output]) # py2 +- ('', '', 0) ++ ('', '...', 0) + sage: import tarfile # py2 + sage: f = tarfile.open(output, 'r') # py2 + sage: print(f.extractfile('sage_worksheet/worksheet.html').read()) # py2 diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index dc9c9b5c874f..c7a3da68b15e 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -104,6 +104,9 @@ stdenv.mkDerivation rec { url = "https://git.sagemath.org/sage.git/patch?id=d27dc479a5772d59e4bc85d805b6ffd595284f1d"; sha256 = "1nf1s9y7n30lhlbdnam7sghgaq9nasmv96415gl5jlcf7a3hlxk3"; }) + + # ignore a deprecation warning for usage of `cmp` in the attrs library in the doctests + ./patches/ignore-cmp-deprecation.patch ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; |