diff options
Diffstat (limited to 'pkgs/applications/science/biology')
5 files changed, 10 insertions, 10 deletions
diff --git a/pkgs/applications/science/biology/EZminc/default.nix b/pkgs/applications/science/biology/EZminc/default.nix index 17d8944128e2..a2ba038c0599 100644 --- a/pkgs/applications/science/biology/EZminc/default.nix +++ b/pkgs/applications/science/biology/EZminc/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, pkgconfig, libminc, bicpl, itk4, fftwFloat, gsl }: +{ lib, stdenv, fetchFromGitHub, cmake, pkg-config, libminc, bicpl, itk4, fftwFloat, gsl }: stdenv.mkDerivation rec { pname = "EZminc"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0wy8cppf5xpgfqvgb3mqs1cjh81n6qzkk6zxv29wvng8nar9wsy4"; }; - nativeBuildInputs = [ cmake pkgconfig ]; + nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ itk4 libminc bicpl fftwFloat gsl ]; cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake" diff --git a/pkgs/applications/science/biology/exonerate/default.nix b/pkgs/applications/science/biology/exonerate/default.nix index 9f87d0117df5..f7b6bf6c14ce 100644 --- a/pkgs/applications/science/biology/exonerate/default.nix +++ b/pkgs/applications/science/biology/exonerate/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, glib, pkgconfig }: +{ lib, stdenv, fetchurl, glib, pkg-config }: stdenv.mkDerivation rec { version = "2.4.0"; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { buildInputs = [ glib ]; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ pkg-config ]; meta = with lib; { description = "Generic tool for sequence alignment"; diff --git a/pkgs/applications/science/biology/neuron/default.nix b/pkgs/applications/science/biology/neuron/default.nix index 3dbc39684c2d..154965b15214 100644 --- a/pkgs/applications/science/biology/neuron/default.nix +++ b/pkgs/applications/science/biology/neuron/default.nix @@ -1,6 +1,6 @@ { lib, stdenv , fetchurl -, pkgconfig +, pkg-config , automake , autoconf , libtool @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { pname = "neuron"; version = "7.5"; - nativeBuildInputs = [ which pkgconfig automake autoconf libtool ]; + nativeBuildInputs = [ which pkg-config automake autoconf libtool ]; buildInputs = [ ncurses readline python mpi iv ]; src = fetchurl { diff --git a/pkgs/applications/science/biology/sortmerna/default.nix b/pkgs/applications/science/biology/sortmerna/default.nix index 01c65f4bcff4..2efa39ac489d 100644 --- a/pkgs/applications/science/biology/sortmerna/default.nix +++ b/pkgs/applications/science/biology/sortmerna/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, cmake, rocksdb, rapidjson, pkgconfig, fetchFromGitHub, fetchpatch, zlib }: +{ lib, stdenv, cmake, rocksdb, rapidjson, pkg-config, fetchFromGitHub, fetchpatch, zlib }: stdenv.mkDerivation rec { pname = "sortmerna"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0r91viylzr069jm7kpcgb45kagvf8sqcj5zc1af4arl9sgfs1f3j"; }; - nativeBuildInputs = [ cmake pkgconfig ]; + nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ zlib rocksdb rapidjson ]; cmakeFlags = [ diff --git a/pkgs/applications/science/biology/vcftools/default.nix b/pkgs/applications/science/biology/vcftools/default.nix index 61b2ea143b8d..9f88079627e0 100755 --- a/pkgs/applications/science/biology/vcftools/default.nix +++ b/pkgs/applications/science/biology/vcftools/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, zlib, autoreconfHook, pkgconfig, perl }: +{ lib, stdenv, fetchFromGitHub, zlib, autoreconfHook, pkg-config, perl }: stdenv.mkDerivation rec { pname = "vcftools"; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0msb09d2cnm8rlpg8bsc1lhjddvp3kf3i9dsj1qs4qgsdlzhxkyx"; }; - buildInputs = [ autoreconfHook pkgconfig zlib perl ]; + buildInputs = [ autoreconfHook pkg-config zlib perl ]; meta = with lib; { description = "A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project"; |