2 files changed, 38 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/freebayes/builder.sh b/pkgs/applications/science/biology/freebayes/builder.sh
new file mode 100644
index 000000000000..a9f56e77d7e3
--- /dev/null
+++ b/pkgs/applications/science/biology/freebayes/builder.sh
@@ -0,0 +1,11 @@
+source $stdenv/setup
+
+unpackPhase
+
+cd freebayes-*
+
+make
+
+mkdir -p $out/bin
+cp bin/freebayes bin/bamleftalign $out/bin
+cp scripts/* $out/bin
diff --git a/pkgs/applications/science/biology/freebayes/default.nix b/pkgs/applications/science/biology/freebayes/default.nix
new file mode 100644
index 000000000000..ef0da619b25a
--- /dev/null
+++ b/pkgs/applications/science/biology/freebayes/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitHub, cmake, gcc, zlib}:
+
+stdenv.mkDerivation rec {
+  name    = "freebayes-${version}";
+  version = "1.1.0";
+
+  src = fetchFromGitHub {
+    name = "freebayes-${version}-src";
+    owner  = "ekg";
+    repo   = "freebayes";
+    rev    = "refs/tags/v${version}";
+    sha256 = "0xb8aicb36w9mfs1gq1x7mcp3p82kl7i61d162hfncqzg2npg8rr";
+    fetchSubmodules = true;
+  };
+
+  buildInputs = [ cmake gcc zlib ];
+
+  builder = ./builder.sh;
+
+  meta = with stdenv.lib; {
+    description = "Bayesian haplotype-based polymorphism discovery and genotyping";
+    license     = licenses.mit;
+    homepage    = https://github.com/ekg/freebayes;
+    maintainers = with maintainers; [ jdagilliland ];
+    platforms = [ "x86_64-linux" ];
+  };
+}