diff options
Diffstat (limited to 'pkgs/applications/science/biology/plink-ng')
-rw-r--r-- | pkgs/applications/science/biology/plink-ng/default.nix | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/plink-ng/default.nix b/pkgs/applications/science/biology/plink-ng/default.nix new file mode 100644 index 000000000000..eb4d2714a127 --- /dev/null +++ b/pkgs/applications/science/biology/plink-ng/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, zlib, openblas, darwin}: + +stdenv.mkDerivation rec { + name = "plink-ng-${version}"; + version = "1.90b3"; + + src = fetchFromGitHub { + owner = "chrchang"; + repo = "plink-ng"; + rev = "v${version}"; + sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq"; + }; + + buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ; + + buildPhase = '' + sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h + ${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""} + make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std + ''; + + installPhase = '' + mkdir -p $out/bin + cp plink $out/bin + ''; + + meta = { + description = "A comprehensive update to the PLINK association analysis toolset"; + homepage = "https://www.cog-genomics.org/plink2"; + license = stdenv.lib.licenses.gpl3; + platforms = stdenv.lib.platforms.all; + }; +} + |