1 files changed, 35 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/muscle/default.nix b/pkgs/applications/science/biology/muscle/default.nix
new file mode 100644
index 000000000000..9cbabc7ab37e
--- /dev/null
+++ b/pkgs/applications/science/biology/muscle/default.nix
@@ -0,0 +1,35 @@
+{ stdenv, fetchurl }:
+
+stdenv.mkDerivation rec {
+  _name   = "muscle";
+  name    = "${_name}-${version}";
+  version = "3.8.31";
+
+  src = fetchurl {
+    url = "https://www.drive5.com/muscle/downloads${version}/${_name}${version}_src.tar.gz";
+    sha256 = "1b89z0x7h098g99g00nqadgjnb2r5wpi9s11b7ddffqkh9m9dia3";
+  };
+
+  patches = [
+    ./muscle-3.8.31-no-static.patch
+  ];
+
+  preBuild = ''
+    cd ./src/
+    patchShebangs mk
+  '';
+
+  installPhase = ''
+    install -vD muscle $out/bin/muscle
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A multiple sequence alignment method with reduced time and space complexity";
+    license     = licenses.publicDomain;
+    homepage    = https://www.drive5.com/muscle/;
+    maintainers = [ maintainers.unode ];
+    # NOTE: Supposed to be compatible with darwin/intel & PPC but currently fails.
+    # Anyone with access to these platforms is welcome to give it a try
+    platforms   = stdenv.lib.platforms.linux;
+  };
+}