1 files changed, 38 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/inormalize/default.nix b/pkgs/applications/science/biology/inormalize/default.nix
new file mode 100644
index 000000000000..d202db8521cf
--- /dev/null
+++ b/pkgs/applications/science/biology/inormalize/default.nix
@@ -0,0 +1,38 @@
+{ stdenv, fetchFromGitHub, cmake, makeWrapper,
+  perl, GetoptTabular, MNI-Perllib,
+  libminc, EBTKS }:
+
+stdenv.mkDerivation rec {
+  pname = "inormalize";
+  name  = "${pname}-1.0.20";
+
+  src = fetchFromGitHub {
+    owner  = "BIC-MNI";
+    repo   = pname;
+    rev    = "79cea9cdfe7b99abfd40afda89ab2253b596ad2f";
+    sha256 = "1ahqv5q0ljvji99a5q8azjkdf6bgp6nr8lwivkqwqs3jm0k5clq7";
+  };
+
+  patches = [ ./lgmask-interp.patch ./nu_correct_norm-interp.patch ];
+
+  nativeBuildInputs = [ cmake makeWrapper ];
+  buildInputs = [ libminc EBTKS ];
+  propagatedBuildInputs = [ perl GetoptTabular MNI-Perllib ];
+
+  cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" "-DEBTKS_DIR=${EBTKS}/lib/" ];
+
+  checkPhase = "ctest --output-on-failure";  # but no tests
+
+  postFixup = ''
+    for p in $out/bin/*; do
+      wrapProgram $p --prefix PERL5LIB : $PERL5LIB
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = "https://github.com/BIC-MNI/${pname}";
+    description = "Program to normalize intensity of MINC files";
+    maintainers = with maintainers; [ bcdarwin ];
+    platforms = platforms.unix;
+  };
+}