11 files changed, 112 insertions, 132 deletions
diff --git a/pkgs/applications/misc/1password/default.nix b/pkgs/applications/misc/1password/default.nix
index 331f516c88ce..a25d40e29bd0 100644
--- a/pkgs/applications/misc/1password/default.nix
+++ b/pkgs/applications/misc/1password/default.nix
@@ -2,24 +2,24 @@
 
 stdenv.mkDerivation rec {
   name = "1password-${version}";
-  version = "0.5.3";
+  version = "0.5.4";
   src =
     if stdenv.hostPlatform.system == "i686-linux" then
       fetchzip {
         url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_linux_386_v${version}.zip";
-        sha256 = "05s223h1yps4k9kmignl0r5sbh6w7m1hnlmafnf1kiwv7gacvxjc";
+        sha256 = "0wni2hk5b1qfr24vi24jiprpi08k3qgaw9lqp61k41a1sjp3izv0";
         stripRoot = false;
       }
     else if stdenv.hostPlatform.system == "x86_64-linux" then
       fetchzip {
         url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_linux_amd64_v${version}.zip";
-        sha256 = "0p9x1fx0309v8dxxaf88m8x8q15zzqywfmjn6v5wb9v3scp9396v";
+        sha256 = "169d5fl3cfw3xrlpm9nlmwbnp0xgh0la9qybzf8ragp0020nlyih";
         stripRoot = false;
       }
     else if stdenv.hostPlatform.system == "x86_64-darwin" then
       fetchzip {
         url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_darwin_amd64_v${version}.zip";
-        sha256 = "1z2xp9bn93gr4ha6zx65va1fb58a2xlnnmpv583y96gq3vbnqdcj";
+        sha256 = "1scikv7v33kzg9rqsrz97yklxaskvif84br13zg8annm43k5vlma";
         stripRoot = false;
       }
     else throw "Architecture not supported";
diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix
index e4dffa98f39a..594173f11c62 100644
--- a/pkgs/applications/misc/alacritty/default.nix
+++ b/pkgs/applications/misc/alacritty/default.nix
@@ -73,7 +73,10 @@ in buildRustPackage rec {
   buildInputs = rpathLibs
              ++ lib.optionals stdenv.isDarwin darwinFrameworks;
 
- outputs = [ "out" "terminfo" ];
+  outputs = [ "out" "terminfo" ];
+
+  # https://github.com/NixOS/nixpkgs/issues/49693
+  doCheck = !stdenv.isDarwin;
 
   postPatch = ''
     substituteInPlace copypasta/src/x11.rs \
diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix
index 808ff2d6f610..f529fa395d93 100644
--- a/pkgs/applications/misc/josm/default.nix
+++ b/pkgs/applications/misc/josm/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "josm-${version}";
-  version = "14289";
+  version = "14382";
 
   src = fetchurl {
     url = "https://josm.openstreetmap.de/download/josm-snapshot-${version}.jar";
-    sha256 = "102dph3479qskzf72cpb9139pq9ifka6pzna1c6s5rs2il6mfvsb";
+    sha256 = "1a2nx9jr1fvw95gdvl9kj3z0cs6ndafm0k4l0lwfx9p9qn4lgzjg";
   };
 
   buildInputs = [ jdk11 makeWrapper ];
diff --git a/pkgs/applications/misc/mupdf/darwin.patch b/pkgs/applications/misc/mupdf/darwin.patch
index 7466fc2ca62b..be1b84b0012f 100644
--- a/pkgs/applications/misc/mupdf/darwin.patch
+++ b/pkgs/applications/misc/mupdf/darwin.patch
@@ -1,47 +1,30 @@
-diff --git a/Makerules b/Makerules
---- a/Makerules
-+++ b/Makerules
-@@ -81,22 +81,10 @@ HAVE_GLUT ?= yes
- SYS_GLUT_CFLAGS := -Wno-deprecated-declarations
- SYS_GLUT_LIBS := -framework GLUT -framework OpenGL
- 
--CC = xcrun cc
--AR = xcrun ar
--LD = xcrun ld
--RANLIB_CMD = xcrun ranlib $@
--
--# Linux uses pkg-config for system libraries.
--else ifeq "$(OS)" "Linux"
+diff -ruN mupdf-1.14.0-source.orig/Makerules mupdf-1.14.0-source/Makerules
+--- mupdf-1.14.0-source.orig/Makerules	2018-11-02 06:57:12.114012496 +0100
++++ mupdf-1.14.0-source/Makerules	2018-11-02 10:11:56.717232992 +0100
+@@ -80,13 +80,6 @@
+   HAVE_GLUT := yes
+   SYS_GLUT_CFLAGS := -Wno-deprecated-declarations
+   SYS_GLUT_LIBS := -framework GLUT -framework OpenGL
+-  CC = xcrun cc
+-  AR = xcrun ar
+-  LD = xcrun ld
+-  RANLIB = xcrun ranlib
 -
- HAVE_PTHREAD := yes
- SYS_PTHREAD_CFLAGS :=
- SYS_PTHREAD_LIBS := -lpthread
+-else ifeq ($(OS),Linux)
+-  HAVE_OBJCOPY := yes
  
--HAVE_GLUT := yes
--SYS_GLUT_CFLAGS :=
--SYS_GLUT_LIBS := -lglut -lGL
--
- ifeq "$(shell pkg-config --exists 'libcrypto >= 1.1.0' && echo yes)" "yes"
- HAVE_LIBCRYPTO := yes
- SYS_LIBCRYPTO_CFLAGS := -DHAVE_LIBCRYPTO $(shell pkg-config --cflags libcrypto)
-@@ -113,7 +101,7 @@ SYS_CURL_CFLAGS += $(shell pkg-config --cflags openssl)
- SYS_CURL_DEPS += $(shell pkg-config --libs openssl)
- endif
- endif
--SYS_CURL_DEPS += -lpthread -lrt
-+SYS_CURL_DEPS += -lpthread
+   ifeq ($(shell pkg-config --exists freetype2 && echo yes),yes)
+ 	SYS_FREETYPE_CFLAGS := $(shell pkg-config --cflags freetype2)
+@@ -119,12 +112,6 @@
+ 	SYS_CURL_LIBS := $(shell pkg-config --libs libcurl)
+   endif
  
- ifeq "$(shell pkg-config --exists x11 xext && echo yes)" "yes"
- HAVE_X11 := yes
-diff --git a/platform/gl/gl-main.c b/platform/gl/gl-main.c
-index d58f7ba..808af18 100644
---- a/platform/gl/gl-main.c
-+++ b/platform/gl/gl-main.c
-@@ -16,6 +16,7 @@ void glutExit(void) {}
- void glutMouseWheelFunc(void *fn) {}
- void glutInitErrorFunc(void *fn) {}
- void glutInitWarningFunc(void *fn) {}
-+#define glutSetOption(X,Y)
- #endif
- 
- enum
+-  HAVE_GLUT := yes
+-  ifeq ($(HAVE_GLUT),yes)
+-	SYS_GLUT_CFLAGS :=
+-	SYS_GLUT_LIBS := -lglut -lGL
+-  endif
+-
+   HAVE_X11 := $(shell pkg-config --exists x11 xext && echo yes)
+   ifeq ($(HAVE_X11),yes)
+ 	X11_CFLAGS := $(shell pkg-config --cflags x11 xext)
diff --git a/pkgs/applications/misc/mupdf/default.nix b/pkgs/applications/misc/mupdf/default.nix
index bce2a79cde33..d4f59272c9c9 100644
--- a/pkgs/applications/misc/mupdf/default.nix
+++ b/pkgs/applications/misc/mupdf/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchurl, fetchpatch, pkgconfig, freetype, harfbuzz, openjpeg
+{ stdenv, lib, fetchurl, pkgconfig, freetype, harfbuzz, openjpeg
 , jbig2dec, libjpeg , darwin
 , enableX11 ? true, libX11, libXext, libXi, libXrandr
 , enableCurl ? true, curl, openssl
@@ -14,23 +14,17 @@ let
 
 
 in stdenv.mkDerivation rec {
-  version = "1.13.0";
+  version = "1.14.0";
   name = "mupdf-${version}";
 
   src = fetchurl {
     url = "https://mupdf.com/downloads/archive/${name}-source.tar.gz";
-    sha256 = "02faww5bnjw76k6igrjzwf0lnw4xd9ckc8d6ilc3c4gfrdi6j707";
+    sha256 = "093p7lv6pgyymagn28n58fs0np928r0i5p2az9cc4gwccwx4hhy4";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "CVE-2018-10289.patch";
-      url = "https://bugs.ghostscript.com/attachment.cgi?id=15230";
-      sha256 = "0jmpacxd9930g6k57kda9jrcrbk75whdlv8xwmqg5jwn848qvy4q";
-    })
-  ]
+  patches =
     # Use shared libraries to decrease size
-    ++ stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.13-shared_libs-1.patch
+       stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.14-shared_libs.patch
     ++ stdenv.lib.optional stdenv.isDarwin ./darwin.patch
   ;
 
@@ -38,7 +32,7 @@ in stdenv.mkDerivation rec {
     sed -i "s/__OPENJPEG__VERSION__/${openJpegVersion}/" source/fitz/load-jpx.c
   '';
 
-  makeFlags = [ "prefix=$(out)" ];
+  makeFlags = [ "prefix=$(out) USE_SYSTEM_LIBS=yes" ];
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ freetype harfbuzz openjpeg jbig2dec libjpeg freeglut libGLU ]
                 ++ lib.optionals enableX11 [ libX11 libXext libXi libXrandr ]
diff --git a/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch b/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch
deleted file mode 100644
index e29f1f52077c..000000000000
--- a/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch
+++ /dev/null
@@ -1,45 +0,0 @@
---- mupdf-1.12.0-source.orig/Makefile	2017-12-13 15:00:30.000000000 +0100
-+++ mupdf-1.12.0-source/Makefile	2017-12-31 00:05:23.003277481 +0100
-@@ -14,7 +14,7 @@
- # Do not specify CFLAGS or LIBS on the make invocation line - specify
- # XCFLAGS or XLIBS instead. Make ignores any lines in the makefile that
- # set a variable that was set on the command line.
--CFLAGS += $(XCFLAGS) -Iinclude
-+CFLAGS += $(XCFLAGS) -Iinclude -fPIC
- LIBS += $(XLIBS) -lm
- 
- LIBS += $(FREETYPE_LIBS)
-@@ -312,10 +312,10 @@
- 
- # --- Library ---
- 
--MUPDF_LIB = $(OUT)/libmupdf.a
--THIRD_LIB = $(OUT)/libmupdfthird.a
--THREAD_LIB = $(OUT)/libmuthreads.a
--PKCS7_LIB = $(OUT)/libmupkcs7.a
-+MUPDF_LIB = $(OUT)/libmupdf.so
-+THIRD_LIB = $(OUT)/libmupdfthird.so
-+THREAD_LIB = $(OUT)/libmuthreads.so
-+PKCS7_LIB = $(OUT)/libmupkcs7.so
- 
- MUPDF_OBJ := \
- 	$(FITZ_OBJ) \
-@@ -343,13 +343,17 @@
- 	$(ZLIB_OBJ) \
- 	$(LCMS2_OBJ)
- 
--$(MUPDF_LIB) : $(MUPDF_OBJ)
-+$(MUPDF_LIB) : $(MUPDF_OBJ) $(THIRD_LIB) $(THREAD_LIB)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf.so -Wl,--no-undefined
- $(THIRD_LIB) : $(THIRD_OBJ)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdfthird.so -Wl,--no-undefined
- $(THREAD_LIB) : $(THREAD_OBJ)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmuthreads.so -Wl,--no-undefined -lpthread
- $(PKCS7_LIB) : $(PKCS7_OBJ)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupkcs7.so
- 
--INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB)
-+INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) $(THREAD_LIB) $(PKCS7_LIB)
- 
- # --- Tools and Apps ---
- 
diff --git a/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch b/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch
new file mode 100644
index 000000000000..131a1bbbf6bd
--- /dev/null
+++ b/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch
@@ -0,0 +1,39 @@
+--- mupdf-1.14.0-source.orig/Makefile	2018-11-02 06:57:12.114012496 +0100
++++ mupdf-1.14.0-source/Makefile	2018-11-02 09:57:10.067945307 +0100
+@@ -20,7 +20,7 @@
+ # Do not specify CFLAGS or LIBS on the make invocation line - specify
+ # XCFLAGS or XLIBS instead. Make ignores any lines in the makefile that
+ # set a variable that was set on the command line.
+-CFLAGS += $(XCFLAGS) -Iinclude
++CFLAGS += $(XCFLAGS) -Iinclude -fPIC
+ LIBS += $(XLIBS) -lm
+ 
+ ifneq ($(threading),no)
+@@ -190,17 +190,21 @@
+ 
+ # --- Library ---
+ 
+-MUPDF_LIB = $(OUT)/libmupdf.a
+-THIRD_LIB = $(OUT)/libmupdf-third.a
+-THREAD_LIB = $(OUT)/libmupdf-threads.a
+-PKCS7_LIB = $(OUT)/libmupdf-pkcs7.a
++MUPDF_LIB = $(OUT)/libmupdf.so
++THIRD_LIB = $(OUT)/libmupdf-third.so
++THREAD_LIB = $(OUT)/libmupdf-threads.so
++PKCS7_LIB = $(OUT)/libmupdf-pkcs7.so
+ 
+-$(MUPDF_LIB) : $(MUPDF_OBJ)
++$(MUPDF_LIB) : $(MUPDF_OBJ) $(THIRD_LIB) $(THREAD_LIB)
++	$(LINK_CMD) $(THIRD_LIBS) -shared -Wl,-soname -Wl,libmupdf.so -Wl,--no-undefined
+ $(THIRD_LIB) : $(THIRD_OBJ)
++	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-third.so -Wl,--no-undefined
+ $(THREAD_LIB) : $(THREAD_OBJ)
++	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-threads.so -Wl,--no-undefined -lpthread
+ $(PKCS7_LIB) : $(PKCS7_OBJ)
++	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-pkcs7.so
+ 
+-INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB)
++INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) $(THREAD_LIB) $(PKCS7_LIB)
+ 
+ # --- Main tools and viewers ---
+ 
diff --git a/pkgs/applications/misc/notejot/default.nix b/pkgs/applications/misc/notejot/default.nix
index 59ba45e6f376..09c49135ca1c 100644
--- a/pkgs/applications/misc/notejot/default.nix
+++ b/pkgs/applications/misc/notejot/default.nix
@@ -1,9 +1,9 @@
-{ stdenv, fetchFromGitHub, vala, pkgconfig, meson, ninja, python3, granite
+{ stdenv, fetchFromGitHub, vala_0_40, pkgconfig, meson, ninja, python3, granite
 , gtk3, gnome3, gtksourceview, json-glib, gobjectIntrospection, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   pname = "notejot";
-  version = "1.4.5";
+  version = "1.4.7";
 
   name = "${pname}-${version}";
 
@@ -20,11 +20,12 @@ stdenv.mkDerivation rec {
     ninja
     pkgconfig
     python3
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     wrapGAppsHook
   ];
 
   buildInputs = [
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
     gnome3.libgee
     granite
     gtk3
@@ -39,9 +40,9 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "Stupidly-simple sticky notes applet";
-    homepage    = https://github.com/lainsce/notejot;
-    license     = licenses.gpl2Plus;
+    homepage = https://github.com/lainsce/notejot;
+    license = licenses.gpl2Plus;
     maintainers = with maintainers; [ worldofpeace ];
-    platforms   = platforms.linux;
+    platforms = platforms.linux;
   };
 }
diff --git a/pkgs/applications/misc/opentx/default.nix b/pkgs/applications/misc/opentx/default.nix
index 0aecc43d1e53..95a2f2b940c2 100644
--- a/pkgs/applications/misc/opentx/default.nix
+++ b/pkgs/applications/misc/opentx/default.nix
@@ -42,6 +42,7 @@ in stdenv.mkDerivation {
     # XXX I would prefer to include these here, though we will need to file a bug upstream to get that changed.
     #"-DDFU_UTIL_PATH=${dfu-util}/bin/dfu-util"
     #"-DAVRDUDE_PATH=${avrdude}/bin/avrdude"
+    "-DNANO=OFF"
   ];
 
   meta = with stdenv.lib; {
diff --git a/pkgs/applications/misc/regextester/default.nix b/pkgs/applications/misc/regextester/default.nix
index c1b1cfb48a28..6f056292d775 100644
--- a/pkgs/applications/misc/regextester/default.nix
+++ b/pkgs/applications/misc/regextester/default.nix
@@ -3,47 +3,51 @@
 , gettext
 , libxml2
 , pkgconfig
-, gtk3
+, glib
 , granite
+, gtk3
 , gnome3
-, cmake
+, meson
 , ninja
-, vala
-, elementary-cmake-modules
+, gobjectIntrospection
+, gsettings-desktop-schemas
+, vala_0_40
 , wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   name = "regextester-${version}";
-  version = "0.1.7";
+  version = "1.0.1";
 
   src = fetchFromGitHub {
     owner = "artemanufrij";
     repo = "regextester";
     rev = version;
-    sha256 = "07shdm10dc7jz2hka5dc51yp81a0dgc47nmkrp6fs6r9wqx0j30n";
+    sha256 = "1xwwv1hccni1mrbl58f7ly4qfq6738vn24bcbl2q346633cd7kx3";
   };
 
-  XDG_DATA_DIRS = stdenv.lib.concatStringsSep ":" [
-    "${granite}/share"
-    "${gnome3.libgee}/share"
-  ];
-
   nativeBuildInputs = [
     pkgconfig
-    wrapGAppsHook
-    vala
-    cmake
+    meson
     ninja
     gettext
+    gobjectIntrospection
     libxml2
-    elementary-cmake-modules
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
+    wrapGAppsHook
   ];
   buildInputs = [
-    gtk3
+    glib
     granite
+    gtk3
+    gnome3.defaultIconTheme
     gnome3.libgee
+    gsettings-desktop-schemas
   ];
 
+  postInstall = ''
+    ${glib.dev}/bin/glib-compile-schemas $out/share/glib-2.0/schemas
+  '';
+
   meta = with stdenv.lib; {
     description = "A desktop application to test regular expressions interactively";
     homepage = https://github.com/artemanufrij/regextester;
diff --git a/pkgs/applications/misc/tootle/default.nix b/pkgs/applications/misc/tootle/default.nix
index d15b8111fb0b..d7a7de368776 100644
--- a/pkgs/applications/misc/tootle/default.nix
+++ b/pkgs/applications/misc/tootle/default.nix
@@ -7,7 +7,7 @@
 
 let
   pname = "tootle";
-  version = "0.1.5";
+  version = "0.2.0";
 in stdenv.mkDerivation rec {
   name = "${pname}-${version}";
 
@@ -15,7 +15,7 @@ in stdenv.mkDerivation rec {
     owner = "bleakgrey";
     repo = pname;
     rev = version;
-    sha256 = "022h1rh1jk3m1f9al0s1rylmnqnkydyc81idfc8jf1g0frnvn5i6";
+    sha256 = "1z3wyx316nns6gi7vlvcfmalhvxncmvcmmlgclbv6b6hwl5x2ysi";
   };
 
   nativeBuildInputs = [ meson ninja pkgconfig python3 vala gobjectIntrospection wrapGAppsHook ];