diff options
Diffstat (limited to 'nixpkgs/pkgs/development/r-modules/default.nix')
| -rw-r--r-- | nixpkgs/pkgs/development/r-modules/default.nix | 18 |
1 files changed, 16 insertions, 2 deletions
diff --git a/nixpkgs/pkgs/development/r-modules/default.nix b/nixpkgs/pkgs/development/r-modules/default.nix index fb3e6ffb9d00..3a13beb7e789 100644 --- a/nixpkgs/pkgs/development/r-modules/default.nix +++ b/nixpkgs/pkgs/development/r-modules/default.nix @@ -405,7 +405,7 @@ let rjags = [ pkgs.jags ]; rJava = with pkgs; [ zlib bzip2.dev icu xz.dev pcre.dev jdk libzip ]; Rlibeemd = [ pkgs.gsl ]; - rmatio = [ pkgs.zlib.dev ]; + rmatio = [ pkgs.zlib.dev pkgs.pkg-config ]; Rmpfr = with pkgs; [ gmp mpfr.dev ]; Rmpi = [ pkgs.mpi ]; RMySQL = with pkgs; [ zlib libmysqlclient openssl.dev ]; @@ -517,6 +517,7 @@ let packagesWithBuildInputs = { # sort -t '=' -k 2 + asciicast = with pkgs; [ xz.dev bzip2.dev zlib.dev icu.dev ]; svKomodo = [ pkgs.which ]; nat = [ pkgs.which ]; nat_templatebrains = [ pkgs.which ]; @@ -946,7 +947,7 @@ let cargoDeps = pkgs.rustPlatform.fetchCargoTarball { src = attrs.src; sourceRoot = "gifski/src/myrustlib"; - hash = "sha256-vBrTQ+5JZA8554Aasbqw7mbaOfJNQjrOpG00IXAcamI="; + hash = "sha256-e6nuiQU22GiO2I+bu0muyICGrdkCLSZUDHDz2mM2hz0="; }; cargoRoot = "src/myrustlib"; @@ -1003,6 +1004,10 @@ let preConfigure = "patchShebangs configure"; }); + gmailr = old.gmailr.overrideAttrs (attrs: { + postPatch = "patchShebangs configure"; + }); + purrr = old.purrr.overrideAttrs (attrs: { patchPhase = "patchShebangs configure"; }); @@ -1048,6 +1053,15 @@ let ''; }); + pathfindR = old.pathfindR.overrideAttrs (attrs: { + postPatch = '' + substituteInPlace "R/zzz.R" \ + --replace-fail " check_java_version()" " Sys.setenv(JAVA_HOME = \"${lib.getBin pkgs.jre_minimal}\"); check_java_version()" + substituteInPlace "R/active_snw_search.R" \ + --replace-fail "system(paste0(\"java" "system(paste0(\"${lib.getBin pkgs.jre_minimal}/bin/java" + ''; + }); + pbdZMQ = old.pbdZMQ.overrideAttrs (attrs: { postPatch = lib.optionalString stdenv.isDarwin '' for file in R/*.{r,r.in}; do |