2 files changed, 143 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/development/python-modules/nipype/default.nix b/nixpkgs/pkgs/development/python-modules/nipype/default.nix
new file mode 100644
index 000000000000..fe08e1f0789e
--- /dev/null
+++ b/nixpkgs/pkgs/development/python-modules/nipype/default.nix
@@ -0,0 +1,105 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, isPy3k
+# python dependencies
+, click
+, configparser ? null
+, dateutil
+, funcsigs
+, future
+, futures
+, mock
+, networkx
+, nibabel
+, numpy
+, packaging
+, prov
+, psutil
+, pydot
+, pytest
+, pytest_xdist
+, pytest-forked
+, scipy
+, simplejson
+, traits
+, xvfbwrapper
+, pytestcov
+, codecov
+# other dependencies
+, which
+, bash
+, glibcLocales
+, callPackage
+}:
+
+assert !isPy3k -> configparser != null;
+
+let
+
+ # This is a temporary convenience package for changes waiting to be merged into the primary rdflib repo.
+ neurdflib = callPackage ./neurdflib.nix { };
+
+in
+
+buildPythonPackage rec {
+  pname = "nipype";
+  version = "1.1.8";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "d5eec6de7d8e7020106c42b37d17f99de92824440cc79dfa6080f7c2e6d9fecc";
+  };
+
+  postPatch = ''
+    substituteInPlace nipype/interfaces/base/tests/test_core.py \
+      --replace "/usr/bin/env bash" "${bash}/bin/bash"
+  '';
+
+  propagatedBuildInputs = [
+    click
+    dateutil
+    funcsigs
+    future
+    networkx
+    neurdflib
+    nibabel
+    numpy
+    packaging
+    prov
+    psutil
+    pydot
+    scipy
+    simplejson
+    traits
+    xvfbwrapper
+  ] ++ stdenv.lib.optional (!isPy3k) [
+    configparser
+    futures
+  ];
+
+  checkInputs = [
+    codecov
+    glibcLocales
+    mock
+    pytest
+    pytest-forked
+    pytest_xdist
+    pytestcov
+    which
+  ];
+
+  checkPhase = ''
+    LC_ALL="en_US.UTF-8" pytest -v --doctest-modules nipype
+  '';
+
+  # See: https://github.com/nipy/nipype/issues/2839
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    homepage = http://nipy.org/nipype/;
+    description = "Neuroimaging in Python: Pipelines and Interfaces";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ ashgillman ];
+  };
+}
diff --git a/nixpkgs/pkgs/development/python-modules/nipype/neurdflib.nix b/nixpkgs/pkgs/development/python-modules/nipype/neurdflib.nix
new file mode 100644
index 000000000000..3042f7156879
--- /dev/null
+++ b/nixpkgs/pkgs/development/python-modules/nipype/neurdflib.nix
@@ -0,0 +1,38 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, isodate
+, html5lib
+, SPARQLWrapper
+, networkx
+, nose
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "neurdflib";
+  version = "5.0.0.post1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1qgmprixqxycxpjk9wjdmjykma14qqa2wcbx4nsldxi0ga7i7vv5";
+  };
+
+  propagatedBuildInputs = [ isodate html5lib SPARQLWrapper ];
+
+  checkInputs = [ networkx nose ];
+
+  # Python 2 syntax
+  # Failing doctest
+  doCheck = false;
+
+  checkPhase = ''
+    ${python.interpreter} run_tests.py
+  '';
+
+  meta = with lib; {
+    description = "A temporary convenience package for changes waiting to be merged into the primary rdflib repo";
+    homepage = https://pypi.org/project/neurdflib;
+    license = licenses.bsd3;
+  };
+}