1 files changed, 36 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/development/libraries/science/biology/htslib/default.nix b/nixpkgs/pkgs/development/libraries/science/biology/htslib/default.nix
new file mode 100644
index 000000000000..cb3a543ad2af
--- /dev/null
+++ b/nixpkgs/pkgs/development/libraries/science/biology/htslib/default.nix
@@ -0,0 +1,36 @@
+{ lib, stdenv, fetchurl, zlib, bzip2, lzma, curl, perl }:
+
+stdenv.mkDerivation rec {
+  pname = "htslib";
+  version = "1.11";
+
+  src = fetchurl {
+    url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";
+    sha256 = "1mrq4mihzx37yqhj3sfz6da6mw49niia808bzsw2gkkgmadxvyng";
+  };
+
+  # perl is only used during the check phase.
+  nativeBuildInputs = [ perl ];
+
+  buildInputs = [ zlib bzip2 lzma curl ];
+
+  configureFlags = [ "--enable-libcurl" ]; # optional but strongly recommended
+
+  installFlags = [ "prefix=$(out)" ];
+
+  preCheck = ''
+    patchShebangs test/
+  '';
+
+  enableParallelBuilding = true;
+
+  doCheck = true;
+
+  meta = with lib; {
+    description = "A C library for reading/writing high-throughput sequencing data";
+    license = licenses.mit;
+    homepage = "http://www.htslib.org/";
+    platforms = platforms.unix;
+    maintainers = [ maintainers.mimame ];
+  };
+}