diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/logic')
124 files changed, 17551 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/logic/abc/default.nix b/nixpkgs/pkgs/applications/science/logic/abc/default.nix new file mode 100644 index 000000000000..1685bb7aba33 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/abc/default.nix @@ -0,0 +1,39 @@ +{ lib +, stdenv +, fetchFromGitHub +, readline +, cmake +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "abc-verifier"; + version = "unstable-2023-10-13"; + + src = fetchFromGitHub { + owner = "yosyshq"; + repo = "abc"; + rev = "896e5e7dedf9b9b1459fa019f1fa8aa8101fdf43"; + hash = "sha256-ou+E2lvDEOxXRXNygE/TyVi7quqk+CJHRI+HDI0xljE="; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ readline ]; + + installPhase = '' + runHook preInstall + install -Dm755 'abc' "$out/bin/abc" + runHook postInstall + ''; + + # needed by yosys + passthru.rev = finalAttrs.src.rev; + + meta = with lib; { + description = "A tool for squential logic synthesis and formal verification"; + homepage = "https://people.eecs.berkeley.edu/~alanmi/abc"; + license = licenses.mit; + maintainers = with maintainers; [ thoughtpolice Luflosi ]; + mainProgram = "abc"; + platforms = platforms.unix; + }; +}) diff --git a/nixpkgs/pkgs/applications/science/logic/abella/default.nix b/nixpkgs/pkgs/applications/science/logic/abella/default.nix new file mode 100644 index 000000000000..4483b8ad4756 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/abella/default.nix @@ -0,0 +1,41 @@ +{ lib, stdenv, fetchurl, rsync, ocamlPackages }: + +stdenv.mkDerivation (finalAttrs: { + pname = "abella"; + version = "2.0.8"; + + src = fetchurl { + url = "http://abella-prover.org/distributions/abella-${finalAttrs.version}.tar.gz"; + sha256 = "sha256-80b/RUpE3KRY0Qu8eeTxAbk6mwGG6jVTPOP0qFjyj2M="; + }; + + strictDeps = true; + + nativeBuildInputs = [ rsync ] ++ (with ocamlPackages; [ ocaml dune_3 menhir findlib ]); + buildInputs = with ocamlPackages; [ cmdliner yojson ]; + + installPhase = '' + mkdir -p $out/bin + rsync -av _build/default/src/abella.exe $out/bin/abella + + mkdir -p $out/share/emacs/site-lisp/abella/ + rsync -av emacs/ $out/share/emacs/site-lisp/abella/ + + mkdir -p $out/share/abella/examples + rsync -av examples/ $out/share/abella/examples/ + ''; + + meta = { + description = "Interactive theorem prover"; + longDescription = '' + Abella is an interactive theorem prover based on lambda-tree syntax. + This means that Abella is well-suited for reasoning about the meta-theory + of programming languages and other logical systems which manipulate + objects with binding. + ''; + homepage = "https://abella-prover.org"; + license = lib.licenses.gpl3; + maintainers = with lib.maintainers; [ bcdarwin ciil ]; + platforms = lib.platforms.unix; + }; +}) diff --git a/nixpkgs/pkgs/applications/science/logic/acgtk/default.nix b/nixpkgs/pkgs/applications/science/logic/acgtk/default.nix new file mode 100644 index 000000000000..3fa4111668eb --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/acgtk/default.nix @@ -0,0 +1,41 @@ +{ lib, stdenv, fetchFromGitLab, dune_3, ocamlPackages }: + +stdenv.mkDerivation { + + pname = "acgtk"; + version = "2.0.0"; + + src = fetchFromGitLab { + domain = "gitlab.inria.fr"; + owner = "acg"; + repo = "dev/acgtk"; + rev = "release-2.0.0-20231009"; + hash = "sha256-ZymSQkBMBePPw7pJkfLkmqbIkQyIqB+7Pyrih2WAO50="; + }; + + strictDeps = true; + + nativeBuildInputs = with ocamlPackages; [ menhir ocaml findlib dune_3 ]; + + buildInputs = with ocamlPackages; [ + ansiterminal cairo2 cmdliner fmt logs menhirLib mtime ocamlgraph readline sedlex yojson + ]; + + buildPhase = '' + runHook preBuild + dune build --profile=release ''${enableParallelBuilding:+-j $NIX_BUILD_CORES} + runHook postBuild + ''; + + installPhase = '' + dune install --prefix $out --libdir $OCAMLFIND_DESTDIR + ''; + + meta = with lib; { + homepage = "https://acg.loria.fr/"; + description = "A toolkit for developing ACG signatures and lexicon"; + license = licenses.cecill20; + inherit (ocamlPackages.ocaml.meta) platforms; + maintainers = [ maintainers.jirkamarsik ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/aiger/default.nix b/nixpkgs/pkgs/applications/science/logic/aiger/default.nix new file mode 100644 index 000000000000..5b9e8f62aa01 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/aiger/default.nix @@ -0,0 +1,60 @@ +{ lib, stdenv, fetchurl, picosat }: + +stdenv.mkDerivation rec { + pname = "aiger"; + version = "1.9.9"; + + src = fetchurl { + url = "https://fmv.jku.at/aiger/${pname}-${version}.tar.gz"; + sha256 = "1ish0dw0nf9gyghxsdhpy1jjiy5wp54c993swp85xp7m6vdx6l0y"; + }; + + patches = [ + # Fix implicit declaration of `isatty`, which is an error with newer versions of clang. + ./fix-missing-header.patch + ]; + + enableParallelBuilding = true; + + configurePhase = '' + # Set up picosat, so we can build 'aigbmc' + mkdir ../picosat + ln -s ${picosat}/include/picosat/picosat.h ../picosat/picosat.h + ln -s ${picosat}/lib/picosat.o ../picosat/picosat.o + ln -s ${picosat}/share/picosat.version ../picosat/VERSION + ./configure.sh + ''; + + installPhase = '' + mkdir -p $out/bin $dev/include $lib/lib + + # Do the installation manually, as the Makefile has odd + # cyrillic characters, and this is easier than adding + # a whole .patch file. + BINS=( \ + aigand aigdd aigflip aigfuzz aiginfo aigjoin \ + aigmiter aigmove aignm aigor aigreset aigsim \ + aigsplit aigstrip aigtoaig aigtoblif aigtocnf \ + aigtodot aigtosmv aigunconstraint aigunroll \ + andtoaig bliftoaig smvtoaig soltostim wrapstim \ + aigbmc aigdep + ) + + for x in ''${BINS[*]}; do + install -m 755 -s $x $out/bin/$x + done + + cp -v aiger.o $lib/lib + cp -v aiger.h $dev/include + ''; + + outputs = [ "out" "dev" "lib" ]; + + meta = { + description = "And-Inverter Graph (AIG) utilities"; + homepage = "https://fmv.jku.at/aiger/"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ thoughtpolice ]; + platforms = lib.platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/aiger/fix-missing-header.patch b/nixpkgs/pkgs/applications/science/logic/aiger/fix-missing-header.patch new file mode 100644 index 000000000000..5f0101bd7a03 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/aiger/fix-missing-header.patch @@ -0,0 +1,11 @@ +diff -ur a/aigunconstraint.c b/aigunconstraint.c +--- a/aigunconstraint.c 2013-10-06 09:08:03.000000000 -0400 ++++ b/aigunconstraint.c 2023-10-27 08:55:01.678566389 -0400 +@@ -26,6 +26,7 @@ + #include <stdarg.h> + #include <stdlib.h> + #include <string.h> ++#include <unistd.h> + + static const char * USAGE = + "usage: aigunconstraint [-h][-v] [<input> [<output>]]\n" diff --git a/nixpkgs/pkgs/applications/science/logic/alt-ergo/default.nix b/nixpkgs/pkgs/applications/science/logic/alt-ergo/default.nix new file mode 100644 index 000000000000..d84aa5b6918a --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/alt-ergo/default.nix @@ -0,0 +1,40 @@ +{ darwin, fetchurl, lib, ocamlPackages, stdenv }: + +let + pname = "alt-ergo"; + version = "2.5.2"; + + src = fetchurl { + url = "https://github.com/OCamlPro/alt-ergo/releases/download/v${version}/alt-ergo-${version}.tbz"; + hash = "sha256-9GDBcBH49sheO5AjmDsznMEbw0JSrnSOcIIRN40/aJU="; + }; +in + +let alt-ergo-lib = ocamlPackages.buildDunePackage rec { + pname = "alt-ergo-lib"; + inherit version src; + buildInputs = with ocamlPackages; [ ppx_blob ]; + propagatedBuildInputs = with ocamlPackages; [ camlzip dolmen_loop dune-build-info fmt ocplib-simplex seq stdlib-shims zarith ]; +}; in + +let alt-ergo-parsers = ocamlPackages.buildDunePackage rec { + pname = "alt-ergo-parsers"; + inherit version src; + nativeBuildInputs = [ ocamlPackages.menhir ]; + propagatedBuildInputs = [ alt-ergo-lib ] ++ (with ocamlPackages; [ psmt2-frontend ]); +}; in + +ocamlPackages.buildDunePackage { + + inherit pname version src; + + nativeBuildInputs = [ ocamlPackages.menhir ] ++ lib.optionals stdenv.isDarwin [ darwin.sigtool ]; + buildInputs = [ alt-ergo-parsers ] ++ (with ocamlPackages; [ cmdliner dune-site ]); + + meta = { + description = "High-performance theorem prover and SMT solver"; + homepage = "https://alt-ergo.ocamlpro.com/"; + license = lib.licenses.ocamlpro_nc; + maintainers = [ lib.maintainers.thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/anders/default.nix b/nixpkgs/pkgs/applications/science/logic/anders/default.nix new file mode 100644 index 000000000000..eb2be71f1681 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/anders/default.nix @@ -0,0 +1,27 @@ +{ lib, fetchFromGitHub, ocamlPackages }: + +ocamlPackages.buildDunePackage rec { + pname = "anders"; + version = "1.1.1"; + + duneVersion = "3"; + + src = fetchFromGitHub { + owner = "groupoid"; + repo = "anders"; + rev = version; + sha256 = "sha256-JUiZoo2rNLfgs94TlJqUNzul/7ODisCjSFAzhgSp1z4="; + }; + + strictDeps = true; + + nativeBuildInputs = [ ocamlPackages.menhir ]; + buildInputs = [ ocamlPackages.zarith ]; + + meta = with lib; { + description = "Modal Homotopy Type System"; + homepage = "https://homotopy.dev/"; + license = licenses.isc; + maintainers = [ maintainers.suhr ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/aspino/default.nix b/nixpkgs/pkgs/applications/science/logic/aspino/default.nix new file mode 100644 index 000000000000..6b0e75de8066 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/aspino/default.nix @@ -0,0 +1,51 @@ +{ lib, stdenv, fetchurl, fetchFromGitHub, zlib, boost }: + +let + glucose' = fetchurl { + url = "http://www.labri.fr/perso/lsimon/downloads/softwares/glucose-syrup.tgz"; + sha256 = "0bq5l2jabhdfhng002qfk0mcj4pfi1v5853x3c7igwfrgx0jmfld"; + }; +in + +stdenv.mkDerivation { + pname = "aspino"; + version = "unstable-2018-03-24"; + + src = fetchFromGitHub { + owner = "alviano"; + repo = "aspino"; + rev = "4d7483e328bdf9a00ef1eb7f2868e7b0f2a82d56"; + hash = "sha256-R1TpBDGdq+NQQzmzqk0wYaz2Hns3qru0AkAyFPQasPA="; + }; + + buildInputs = [ zlib boost ]; + + postPatch = '' + substituteInPlace Makefile \ + --replace "GCC = g++" "GCC = c++" + substituteInPlace src/main.cc \ + --replace "defined(__linux__)" "defined(__linux__) && defined(__x86_64__)" + substituteInPlace src/MaxSatSolver.cc \ + --replace "occ[i][sign(softLiterals[j])] > 0" "occ[i][sign(softLiterals[j])] != 0" + ''; + + preBuild = '' + cp ${glucose'} patches/glucose-syrup.tgz + ./bootstrap.sh + ''; + + installPhase = '' + runHook preInstall + mkdir -p $out/bin + install -m0755 build/release/{aspino,fairino-{bs,ls,ps},maxino-2015-{k16,kdyn}} $out/bin + runHook postInstall + ''; + + meta = with lib; { + description = "SAT/PseudoBoolean/MaxSat/ASP solver using glucose"; + maintainers = with maintainers; [ gebner ]; + platforms = platforms.unix; + license = licenses.asl20; + homepage = "https://alviano.net/software/maxino/"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/avy/default.nix b/nixpkgs/pkgs/applications/science/logic/avy/default.nix new file mode 100644 index 000000000000..38fef51c56e6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/avy/default.nix @@ -0,0 +1,47 @@ +{ lib, stdenv, fetchgit, cmake, zlib, boost }: + +stdenv.mkDerivation rec { + pname = "avy"; + version = "2019.05.01"; # date of cav19 tag + + src = fetchgit { + url = "https://bitbucket.org/arieg/extavy"; + rev = "cav19"; + sha256 = "0qdzy9srxp5f38x4dbb3prnr9il6cy0kz80avrvd7fxqzy7wdlwy"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ zlib boost.out boost.dev ]; + env.NIX_CFLAGS_COMPILE = toString ([ "-Wno-narrowing" ] + # Squelch endless stream of warnings on same few things + ++ lib.optionals stdenv.cc.isClang [ + "-Wno-empty-body" + "-Wno-tautological-compare" + "-Wc++11-compat-deprecated-writable-strings" + "-Wno-deprecated" + ]); + + prePatch = '' + sed -i -e '1i#include <stdint.h>' abc/src/bdd/dsd/dsd.h + substituteInPlace abc/src/bdd/dsd/dsd.h --replace \ + '((Child = Dsd_NodeReadDec(Node,Index))>=0);' \ + '((intptr_t)(Child = Dsd_NodeReadDec(Node,Index))>=0);' + + patch -p1 -d minisat -i ${./minisat-fenv.patch} + patch -p1 -d glucose -i ${./glucose-fenv.patch} + ''; + + installPhase = '' + mkdir -p $out/bin + cp avy/src/{avy,avybmc} $out/bin/ + ''; + + meta = { + description = "AIGER model checking for Property Directed Reachability"; + homepage = "https://arieg.bitbucket.io/avy/"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ thoughtpolice ]; + platforms = lib.platforms.linux; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/avy/glucose-fenv.patch b/nixpkgs/pkgs/applications/science/logic/avy/glucose-fenv.patch new file mode 100644 index 000000000000..eb0b196966b8 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/avy/glucose-fenv.patch @@ -0,0 +1,57 @@ +diff --git a/core/Main.cc b/core/Main.cc +index fd8fca1..37d2ed5 100644 +--- a/core/Main.cc ++++ b/core/Main.cc +@@ -95,9 +95,13 @@ int main(int argc, char** argv) + setUsageHelp("c USAGE: %s [options] <input-file> <result-output-file>\n\n where input may be either in plain or gzipped DIMACS.\n"); + // printf("This is MiniSat 2.0 beta\n"); + +-#if defined(__linux__) +- fpu_control_t oldcw, newcw; +- _FPU_GETCW(oldcw); newcw = (oldcw & ~_FPU_EXTENDED) | _FPU_DOUBLE; _FPU_SETCW(newcw); ++#if defined(__linux__) && defined(__x86_64__) ++ fenv_t fenv; ++ ++ fegetenv(&fenv); ++ fenv.__control_word &= ~0x300; /* _FPU_EXTENDED */ ++ fenv.__control_word |= 0x200; /* _FPU_DOUBLE */ ++ fesetenv(&fenv); + printf("c WARNING: for repeatability, setting FPU to use double precision\n"); + #endif + // Extra options: +diff --git a/simp/Main.cc b/simp/Main.cc +index 4f4772d..c605f6e 100644 +--- a/simp/Main.cc ++++ b/simp/Main.cc +@@ -96,9 +96,13 @@ int main(int argc, char** argv) + setUsageHelp("c USAGE: %s [options] <input-file> <result-output-file>\n\n where input may be either in plain or gzipped DIMACS.\n"); + + +-#if defined(__linux__) +- fpu_control_t oldcw, newcw; +- _FPU_GETCW(oldcw); newcw = (oldcw & ~_FPU_EXTENDED) | _FPU_DOUBLE; _FPU_SETCW(newcw); ++#if defined(__linux__) && defined(__x86_64__) ++ fenv_t fenv; ++ ++ fegetenv(&fenv); ++ fenv.__control_word &= ~0x300; /* _FPU_EXTENDED */ ++ fenv.__control_word |= 0x200; /* _FPU_DOUBLE */ ++ fesetenv(&fenv); + printf("WARNING: for repeatability, setting FPU to use double precision\n"); + #endif + // Extra options: +diff --git a/utils/System.h b/utils/System.h +index 004d498..2f6d922 100644 +--- a/utils/System.h ++++ b/utils/System.h +@@ -21,8 +21,8 @@ OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWA + #ifndef Glucose_System_h + #define Glucose_System_h + +-#if defined(__linux__) +-#include <fpu_control.h> ++#if defined(__linux__) && defined(__x86_64__) ++#include <fenv.h> + #endif + + #include "glucose/mtl/IntTypes.h" diff --git a/nixpkgs/pkgs/applications/science/logic/avy/minisat-fenv.patch b/nixpkgs/pkgs/applications/science/logic/avy/minisat-fenv.patch new file mode 100644 index 000000000000..31e481bd6696 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/avy/minisat-fenv.patch @@ -0,0 +1,57 @@ +diff --git a/core/Main.cc b/core/Main.cc +index 2b0d97b..9ba985d 100644 +--- a/core/Main.cc ++++ b/core/Main.cc +@@ -77,9 +77,13 @@ int main(int argc, char** argv) + setUsageHelp("USAGE: %s [options] <input-file> <result-output-file>\n\n where input may be either in plain or gzipped DIMACS.\n"); + // printf("This is MiniSat 2.0 beta\n"); + +-#if defined(__linux__) +- fpu_control_t oldcw, newcw; +- _FPU_GETCW(oldcw); newcw = (oldcw & ~_FPU_EXTENDED) | _FPU_DOUBLE; _FPU_SETCW(newcw); ++#if defined(__linux__) && defined(__x86_64__) ++ fenv_t fenv; ++ ++ fegetenv(&fenv); ++ fenv.__control_word &= ~0x300; /* _FPU_EXTENDED */ ++ fenv.__control_word |= 0x200; /* _FPU_DOUBLE */ ++ fesetenv(&fenv); + printf("WARNING: for repeatability, setting FPU to use double precision\n"); + #endif + // Extra options: +diff --git a/simp/Main.cc b/simp/Main.cc +index 2804d7f..7fbdb33 100644 +--- a/simp/Main.cc ++++ b/simp/Main.cc +@@ -78,9 +78,13 @@ int main(int argc, char** argv) + setUsageHelp("USAGE: %s [options] <input-file> <result-output-file>\n\n where input may be either in plain or gzipped DIMACS.\n"); + // printf("This is MiniSat 2.0 beta\n"); + +-#if defined(__linux__) +- fpu_control_t oldcw, newcw; +- _FPU_GETCW(oldcw); newcw = (oldcw & ~_FPU_EXTENDED) | _FPU_DOUBLE; _FPU_SETCW(newcw); ++#if defined(__linux__) && defined(__x86_64__) ++ fenv_t fenv; ++ ++ fegetenv(&fenv); ++ fenv.__control_word &= ~0x300; /* _FPU_EXTENDED */ ++ fenv.__control_word |= 0x200; /* _FPU_DOUBLE */ ++ fesetenv(&fenv); + printf("WARNING: for repeatability, setting FPU to use double precision\n"); + #endif + // Extra options: +diff --git a/utils/System.h b/utils/System.h +index 1758192..840bee5 100644 +--- a/utils/System.h ++++ b/utils/System.h +@@ -21,8 +21,8 @@ OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWA + #ifndef Minisat_System_h + #define Minisat_System_h + +-#if defined(__linux__) +-#include <fpu_control.h> ++#if defined(__linux__) && defined(__x86_64__) ++#include <fenv.h> + #endif + + #include "mtl/IntTypes.h" diff --git a/nixpkgs/pkgs/applications/science/logic/beluga/default.nix b/nixpkgs/pkgs/applications/science/logic/beluga/default.nix new file mode 100644 index 000000000000..693be7f33886 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/beluga/default.nix @@ -0,0 +1,43 @@ +{ lib, fetchFromGitHub, ocamlPackages }: + +ocamlPackages.buildDunePackage rec { + pname = "beluga"; + version = "1.1.1"; + + src = fetchFromGitHub { + owner = "Beluga-lang"; + repo = "Beluga"; + rev = "refs/tags/v${version}"; + hash = "sha256-l/C77czLtlLnpadVx4d9ve9jv/e11jsOgzrbXt+Zo5s="; + }; + + duneVersion = "3"; + + buildInputs = with ocamlPackages; [ + gen + sedlex + extlib + dune-build-info + linenoise + omd + uri + ounit2 + yojson + ]; + + doCheck = true; + + postInstall = '' + mkdir -p $out/share/emacs/site-lisp/beluga/ + cp -r tools/beluga-mode.el $out/share/emacs/site-lisp/beluga + ''; + + meta = with lib; { + description = "A functional language for reasoning about formal systems"; + homepage = "https://complogic.cs.mcgill.ca/beluga"; + changelog = "https://github.com/Beluga-lang/Beluga/releases/tag/v${version}"; + license = licenses.gpl3Plus; + maintainers = [ maintainers.bcdarwin ]; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/bitwuzla/default.nix b/nixpkgs/pkgs/applications/science/logic/bitwuzla/default.nix new file mode 100644 index 000000000000..4af4058339d9 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/bitwuzla/default.nix @@ -0,0 +1,69 @@ +{ stdenv +, fetchFromGitHub +, lib +, python3 +, cmake +, lingeling +, btor2tools +, symfpu +, gtest +, gmp +, cadical +, minisat +, picosat +, cryptominisat +, zlib +, pkg-config + # "*** internal error in 'lglib.c': watcher stack overflow" on aarch64-linux +, withLingeling ? !stdenv.hostPlatform.isAarch64 +}: + +stdenv.mkDerivation rec { + pname = "bitwuzla"; + version = "unstable-2022-10-03"; + + src = fetchFromGitHub { + owner = "bitwuzla"; + repo = "bitwuzla"; + rev = "3bc0f9f1aca04afabe1aff53dd0937924618b2ad"; + hash = "sha256-UXZERl7Nedwex/oUrcf6/GkDSgOQ537WDYm117RfvWo="; + }; + + nativeBuildInputs = [ cmake pkg-config ]; + buildInputs = [ + cadical + cryptominisat + picosat + minisat + btor2tools + symfpu + gmp + zlib + ] ++ lib.optional withLingeling lingeling; + + cmakeFlags = [ + "-DBUILD_SHARED_LIBS=ON" + "-DPicoSAT_INCLUDE_DIR=${lib.getDev picosat}/include/picosat" + "-DBtor2Tools_INCLUDE_DIR=${lib.getDev btor2tools}/include/btor2parser" + "-DBtor2Tools_LIBRARIES=${lib.getLib btor2tools}/lib/libbtor2parser${stdenv.hostPlatform.extensions.sharedLibrary}" + ] ++ lib.optional doCheck "-DTESTING=YES"; + + nativeCheckInputs = [ python3 gtest ]; + # two tests fail on darwin and 3 on aarch64-linux + doCheck = stdenv.hostPlatform.isLinux && (!stdenv.hostPlatform.isAarch64); + preCheck = let + var = if stdenv.isDarwin then "DYLD_LIBRARY_PATH" else "LD_LIBRARY_PATH"; + in + '' + export ${var}=$(readlink -f lib) + patchShebangs .. + ''; + + meta = with lib; { + description = "A SMT solver for fixed-size bit-vectors, floating-point arithmetic, arrays, and uninterpreted functions"; + homepage = "https://bitwuzla.github.io"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ symphorien ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/boolector/default.nix b/nixpkgs/pkgs/applications/science/logic/boolector/default.nix new file mode 100644 index 000000000000..d23db163aeb6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/boolector/default.nix @@ -0,0 +1,67 @@ +{ stdenv, fetchFromGitHub, lib, python3, fetchpatch +, cmake, lingeling, btor2tools, gtest, gmp +}: + +stdenv.mkDerivation rec { + pname = "boolector"; + version = "3.2.3"; + + src = fetchFromGitHub { + owner = "boolector"; + repo = "boolector"; + rev = version; + hash = "sha256-CdfpXUbU1+yEmrNyl+hvHlJfpzzzx356naim6vRafDg="; + }; + + patches = [ + # present in master - remove after 3.2.3 + (fetchpatch { + name = "update-unit-tests-to-cpp-14.patch"; + url = "https://github.com/Boolector/boolector/commit/cc13f371c0c5093d98638ddd213dc835ef3aadf3.patch"; + hash = "sha256-h8DBhAvUu+wXBwmvwRhHnJv3XrbEpBpvX9D1FI/+avc="; + }) + ]; + + nativeBuildInputs = [ cmake gtest ]; + buildInputs = [ lingeling btor2tools gmp ]; + + cmakeFlags = + [ "-DBUILD_SHARED_LIBS=ON" + "-DUSE_LINGELING=YES" + "-DBtor2Tools_INCLUDE_DIR=${btor2tools.dev}/include/btor2parser" + ] ++ (lib.optional (gmp != null) "-DUSE_GMP=YES"); + + nativeCheckInputs = [ python3 ]; + doCheck = true; + preCheck = + let var = if stdenv.isDarwin then "DYLD_LIBRARY_PATH" else "LD_LIBRARY_PATH"; + in + # tests modelgen and modelgensmt2 spawn boolector in another processes and + # macOS strips DYLD_LIBRARY_PATH, hardcode it for testing + lib.optionalString stdenv.isDarwin '' + cp -r bin bin.back + install_name_tool -change libboolector.dylib $(pwd)/lib/libboolector.dylib bin/boolector + '' + '' + export ${var}=$(readlink -f lib) + patchShebangs .. + ''; + + postCheck = lib.optionalString stdenv.isDarwin '' + rm -rf bin + mv bin.back bin + ''; + + # this is what haskellPackages.boolector expects + postInstall = '' + cp $out/include/boolector/boolector.h $out/include/boolector.h + cp $out/include/boolector/btortypes.h $out/include/btortypes.h + ''; + + meta = with lib; { + description = "An extremely fast SMT solver for bit-vectors and arrays"; + homepage = "https://boolector.github.io"; + license = licenses.mit; + platforms = with platforms; linux ++ darwin; + maintainers = with maintainers; [ thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/btor2tools/default.nix b/nixpkgs/pkgs/applications/science/logic/btor2tools/default.nix new file mode 100644 index 000000000000..ce73ea636f29 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/btor2tools/default.nix @@ -0,0 +1,46 @@ +{ lib, stdenv, cmake, fetchFromGitHub, fetchpatch, fixDarwinDylibNames }: + +stdenv.mkDerivation rec { + pname = "btor2tools"; + version = "1.0.0-pre_${src.rev}"; + + src = fetchFromGitHub { + owner = "boolector"; + repo = "btor2tools"; + rev = "9831f9909fb283752a3d6d60d43613173bd8af42"; + sha256 = "0mfqmkgvyw8fa2c09kww107dmk180ch1hp98r5kv41vnc04iqb0s"; + }; + + patches = [ + (fetchpatch { + name = "gcc-13.patch"; + url = "https://github.com/Boolector/btor2tools/commit/037f1fa88fb439dca6f648ad48a3463256d69d8b.patch"; + hash = "sha256-FX1yy9XdUs1tAReOxhEzNHu48DrISzNNMSYoIrhHoFY="; + }) + ]; + + nativeBuildInputs = [ cmake ] ++ lib.optional stdenv.isDarwin fixDarwinDylibNames; + + installPhase = '' + mkdir -p $out $dev/include/btor2parser/ $lib/lib + + cp -vr bin $out + cp -v ../src/btor2parser/btor2parser.h $dev/include/btor2parser + cp -v lib/libbtor2parser.* $lib/lib + ''; + + outputs = [ "out" "dev" "lib" ]; + + cmakeFlags = [ + # RPATH of binary /nix/store/.../bin/btorsim contains a forbidden reference to /build/ + "-DCMAKE_SKIP_BUILD_RPATH=ON" + ]; + + meta = with lib; { + description = "A generic parser and tool package for the BTOR2 format"; + homepage = "https://github.com/Boolector/btor2tools"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cadical/default.nix b/nixpkgs/pkgs/applications/science/logic/cadical/default.nix new file mode 100644 index 000000000000..49ba06e36cc0 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cadical/default.nix @@ -0,0 +1,48 @@ +{ lib, stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + pname = "cadical"; + version = "1.9.4"; + + src = fetchFromGitHub { + owner = "arminbiere"; + repo = "cadical"; + rev = "rel-${version}"; + sha256 = "sha256-cSuvvd7ci8jXzFowS7+V3bor7bXCxaKcGdDU91nIo+k="; + }; + + outputs = [ "out" "dev" "lib" ]; + doCheck = true; + + # the configure script is not generated by autotools and does not accept the + # arguments that the default configurePhase passes like --prefix and --libdir + configurePhase = '' + runHook preConfigure + + ./configure + + runHook postConfigure + ''; + + installPhase = '' + runHook preInstall + + install -Dm0755 build/cadical "$out/bin/cadical" + install -Dm0755 build/mobical "$out/bin/mobical" + install -Dm0644 src/ccadical.h "$dev/include/ccadical.h" + install -Dm0644 src/cadical.hpp "$dev/include/cadical.hpp" + install -Dm0644 build/libcadical.a "$lib/lib/libcadical.a" + mkdir -p "$out/share/doc/${pname}/" + install -Dm0755 {LICEN?E,README*,VERSION} "$out/share/doc/${pname}/" + + runHook postInstall + ''; + + meta = with lib; { + description = "Simplified Satisfiability Solver"; + maintainers = with maintainers; [ shnarazk ]; + platforms = platforms.unix; + license = licenses.mit; + homepage = "https://fmv.jku.at/cadical/"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cbmc/0001-Do-not-download-sources-in-cmake.patch b/nixpkgs/pkgs/applications/science/logic/cbmc/0001-Do-not-download-sources-in-cmake.patch new file mode 100644 index 000000000000..181214093ef8 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cbmc/0001-Do-not-download-sources-in-cmake.patch @@ -0,0 +1,41 @@ +From 206084d2e08198b0b5b67733c407bd3fb74affb1 Mon Sep 17 00:00:00 2001 +From: Jiajie Chen <c@jia.je> +Date: Sun, 2 Jul 2023 22:43:27 +0800 +Subject: [PATCH] Do not download sources in cmake + +--- + src/solvers/CMakeLists.txt | 11 +---------- + 1 file changed, 1 insertion(+), 10 deletions(-) + +diff --git a/src/solvers/CMakeLists.txt b/src/solvers/CMakeLists.txt +index 8bfcf4d13c..6ba858a461 100644 +--- a/src/solvers/CMakeLists.txt ++++ b/src/solvers/CMakeLists.txt +@@ -123,16 +123,6 @@ foreach(SOLVER ${sat_impl}) + elseif("${SOLVER}" STREQUAL "cadical") + message(STATUS "Building solvers with cadical") + +- download_project(PROJ cadical +- URL https://github.com/arminbiere/cadical/archive/rel-1.5.3.tar.gz +- PATCH_COMMAND patch -p1 -i ${CBMC_SOURCE_DIR}/../scripts/cadical-1.5.3-patch +- COMMAND cmake -E copy ${CBMC_SOURCE_DIR}/../scripts/cadical_CMakeLists.txt CMakeLists.txt +- COMMAND ./configure +- URL_MD5 265b1a715000ed3c5b6de36ddd1278a0 +- ) +- +- add_subdirectory(${cadical_SOURCE_DIR} ${cadical_BINARY_DIR}) +- + target_compile_definitions(solvers PUBLIC + SATCHECK_CADICAL HAVE_CADICAL + ) +@@ -140,6 +130,7 @@ foreach(SOLVER ${sat_impl}) + target_include_directories(solvers + PUBLIC + ${cadical_SOURCE_DIR}/src ++ ${cadical_INCLUDE_DIR} + ) + + target_link_libraries(solvers cadical) +-- +2.40.1 + diff --git a/nixpkgs/pkgs/applications/science/logic/cbmc/default.nix b/nixpkgs/pkgs/applications/science/logic/cbmc/default.nix new file mode 100644 index 000000000000..6a878735bb3d --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cbmc/default.nix @@ -0,0 +1,88 @@ +{ lib +, stdenv +, fetchFromGitHub +, testers +, bison +, cadical +, cbmc +, cmake +, flex +, makeWrapper +, perl +}: + +stdenv.mkDerivation rec { + pname = "cbmc"; + version = "5.91.0"; + + src = fetchFromGitHub { + owner = "diffblue"; + repo = pname; + rev = "${pname}-${version}"; + sha256 = "sha256-7DzhGEDS9T6WIjGoxOw9Gf/q+tYNFJDPbQUBV3tbn/I="; + }; + + nativeBuildInputs = [ + bison + cmake + flex + perl + makeWrapper + ]; + + buildInputs = [ cadical ]; + + # do not download sources + # link existing cadical instead + patches = [ + ./0001-Do-not-download-sources-in-cmake.patch + ]; + + postPatch = '' + # do not hardcode gcc + substituteInPlace "scripts/bash-autocomplete/extract_switches.sh" \ + --replace "gcc" "$CC" \ + --replace "g++" "$CXX" + # fix library_check.sh interpreter error + patchShebangs . + '' + lib.optionalString (!stdenv.cc.isGNU) '' + # goto-gcc rely on gcc + substituteInPlace "regression/CMakeLists.txt" \ + --replace "add_subdirectory(goto-gcc)" "" + ''; + + postInstall = '' + # goto-cc expects ls_parse.py in PATH + mkdir -p $out/share/cbmc + mv $out/bin/ls_parse.py $out/share/cbmc/ls_parse.py + chmod +x $out/share/cbmc/ls_parse.py + wrapProgram $out/bin/goto-cc \ + --prefix PATH : "$out/share/cbmc" \ + ''; + + env.NIX_CFLAGS_COMPILE = toString (lib.optionals stdenv.cc.isGNU [ + # Needed with GCC 12 but breaks on darwin (with clang) + "-Wno-error=maybe-uninitialized" + ] ++ lib.optionals stdenv.cc.isClang [ + # fix "argument unused during compilation" + "-Wno-unused-command-line-argument" + ]); + + # TODO: add jbmc support + cmakeFlags = [ "-DWITH_JBMC=OFF" "-Dsat_impl=cadical" "-Dcadical_INCLUDE_DIR=${cadical.dev}/include" ]; + + passthru.tests.version = testers.testVersion { + package = cbmc; + command = "cbmc --version"; + }; + + meta = with lib; { + description = "CBMC is a Bounded Model Checker for C and C++ programs"; + homepage = "http://www.cprover.org/cbmc/"; + license = licenses.bsdOriginal; + maintainers = with maintainers; [ jiegec ]; + platforms = platforms.unix; + # https://github.com/diffblue/cbmc/issues/7423 + broken = stdenv.isLinux && stdenv.isAarch64; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cedille/Fix-to-string.agda-to-compile-with-Agda-2.6.1.patch b/nixpkgs/pkgs/applications/science/logic/cedille/Fix-to-string.agda-to-compile-with-Agda-2.6.1.patch new file mode 100644 index 000000000000..51f1478987eb --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cedille/Fix-to-string.agda-to-compile-with-Agda-2.6.1.patch @@ -0,0 +1,31 @@ +From 563f023aba1034f4f433f412302b825b059ef5a5 Mon Sep 17 00:00:00 2001 +From: Mark Barbone <mark.l.barbone@gmail.com> +Date: Sun, 19 Jul 2020 17:24:30 -0400 +Subject: [PATCH] Fix to-string.agda to compile with Agda 2.6.1 + +--- +Adapted from https://github.com/cedille/cedille/pull/156. + + src/to-string.agda | 6 +++--- + 1 file changed, 3 insertions(+), 3 deletions(-) + +diff --git a/src/to-string.agda b/src/to-string.agda +index 2505942..051a2da 100644 +--- a/src/to-string.agda ++++ b/src/to-string.agda +@@ -100,9 +100,9 @@ no-parens {TK} _ _ _ = tt + no-parens {QUALIF} _ _ _ = tt + no-parens {ARG} _ _ _ = tt + +-pattern ced-ops-drop-spine = cedille-options.options.mk-options _ _ _ _ ff _ _ _ ff _ +-pattern ced-ops-conv-arr = cedille-options.options.mk-options _ _ _ _ _ _ _ _ ff _ +-pattern ced-ops-conv-abs = cedille-options.options.mk-options _ _ _ _ _ _ _ _ tt _ ++pattern ced-ops-drop-spine = cedille-options.mk-options _ _ _ _ ff _ _ _ ff _ ++pattern ced-ops-conv-arr = cedille-options.mk-options _ _ _ _ _ _ _ _ ff _ ++pattern ced-ops-conv-abs = cedille-options.mk-options _ _ _ _ _ _ _ _ tt _ + + drop-spine : cedille-options.options → {ed : exprd} → ctxt → ⟦ ed ⟧ → ⟦ ed ⟧ + drop-spine ops @ ced-ops-drop-spine = h +-- +2.27.0 + diff --git a/nixpkgs/pkgs/applications/science/logic/cedille/default.nix b/nixpkgs/pkgs/applications/science/logic/cedille/default.nix new file mode 100644 index 000000000000..4d026a2d9c7a --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cedille/default.nix @@ -0,0 +1,60 @@ +{ stdenv +, lib +, fetchFromGitHub +, alex +, happy +, Agda +, buildPackages +, ghcWithPackages +}: + +stdenv.mkDerivation rec { + version = "1.1.2"; + pname = "cedille"; + + src = fetchFromGitHub { + owner = "cedille"; + repo = "cedille"; + rev = "v${version}"; + sha256 = "1j745q9sd32fhcb96wjq6xvyqq1k6imppjnya6x0n99fyfnqzvg9"; + fetchSubmodules = true; + }; + + patches = [ + ./Fix-to-string.agda-to-compile-with-Agda-2.6.1.patch + ]; + + nativeBuildInputs = [ alex happy ]; + buildInputs = [ Agda (ghcWithPackages (ps: [ps.ieee])) ]; + + LANG = "en_US.UTF-8"; + LOCALE_ARCHIVE = + lib.optionalString (stdenv.buildPlatform.libc == "glibc") + "${buildPackages.glibcLocales}/lib/locale/locale-archive"; + + postPatch = '' + patchShebangs create-libraries.sh + ''; + + installPhase = '' + install -Dm755 -t $out/bin/ cedille + install -Dm755 -t $out/bin/ core/cedille-core + install -Dm644 -t $out/share/info docs/info/cedille-info-main.info + + mkdir -p $out/lib/ + cp -r lib/ $out/lib/cedille/ + ''; + + meta = with lib; { + description = "An interactive theorem-prover and dependently typed programming language, based on extrinsic (aka Curry-style) type theory"; + homepage = "https://cedille.github.io/"; + license = licenses.mit; + maintainers = with maintainers; [ marsam mpickering ]; + platforms = platforms.unix; + + # Broken due to Agda update. See + # https://github.com/NixOS/nixpkgs/pull/129606#issuecomment-881107449. + broken = true; + hydraPlatforms = platforms.none; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/celf/default.nix b/nixpkgs/pkgs/applications/science/logic/celf/default.nix new file mode 100644 index 000000000000..044a6f3ca1c4 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/celf/default.nix @@ -0,0 +1,36 @@ +{ lib, stdenv, fetchFromGitHub, smlnj }: + +stdenv.mkDerivation rec { + pname = "celf"; + pversion = "2013-07-25"; + name = "${pname}-${pversion}"; + + src = fetchFromGitHub { + owner = "clf"; + repo = pname; + rev = "d61d95900ab316468ae850fa34a2fe9488bc5b59"; + sha256 = "0slrwcxglp0sdbp6wr65cdkl5wcap2i0fqxbwqfi1q3cpb6ph6hq"; + }; + + buildInputs = [ smlnj ]; + + # (can also build with MLton) + buildPhase = '' + export SMLNJ_HOME=${smlnj} + sml < main-export.sml + ''; + + installPhase = '' + mkdir -p $out/bin + cp .heap* $out/bin/ + ./.mkexec ${smlnj}/bin/sml $out/bin celf + ''; + + meta = with lib; { + description = "Linear logic programming system"; + homepage = "https://github.com/clf/celf"; + license = licenses.gpl3; + maintainers = with maintainers; [ bcdarwin ]; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/clprover/clprover.nix b/nixpkgs/pkgs/applications/science/logic/clprover/clprover.nix new file mode 100644 index 000000000000..2a8c058a80bb --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/clprover/clprover.nix @@ -0,0 +1,27 @@ +{ lib, stdenv, fetchzip }: + +stdenv.mkDerivation { + pname = "clprover"; + version = "1.0.3"; + + src = fetchzip { + url = "https://cgi.csc.liv.ac.uk/~ullrich/CLProver++/CLProver++-v1.0.3-18-04-2015.zip"; + sha256 = "10kmlg4m572qwfzi6hkyb0ypb643xw8sfb55xx7866lyh37w1q3s"; + stripRoot = false; + }; + + installPhase = '' + mkdir $out + cp -r bin $out/bin + mkdir -p $out/share/clprover + cp -r examples $out/share/clprover/examples + ''; + + meta = with lib; { + description = "Resolution-based theorem prover for Coalition Logic implemented in C++"; + homepage = "https://cgi.csc.liv.ac.uk/~ullrich/CLProver++/"; + license = licenses.gpl3; # Note that while the website states that it is GPLv2 but the file in the zip as well as the comments in the source state it is GPLv3 + maintainers = with maintainers; [ mgttlinger ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/coq/default.nix b/nixpkgs/pkgs/applications/science/logic/coq/default.nix new file mode 100644 index 000000000000..e52a51936180 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/coq/default.nix @@ -0,0 +1,241 @@ +# - coqide compilation can be disabled by setting buildIde to false +# - The csdp program used for the Micromega tactic is statically referenced. +# However, coq can build without csdp by setting it to null. +# In this case some Micromega tactics will search the user's path for the csdp program and will fail if it is not found. +# - The exact version can be specified through the `version` argument to +# the derivation; it defaults to the latest stable version. + +{ lib, stdenv, fetchzip, writeText, pkg-config, gnumake42 +, customOCamlPackages ? null +, ocamlPackages_4_05, ocamlPackages_4_09, ocamlPackages_4_10, ocamlPackages_4_12 +, ocamlPackages_4_14 +, ncurses +, buildIde ? null # default is true for Coq < 8.14 and false for Coq >= 8.14 +, glib, gnome, wrapGAppsHook, makeDesktopItem, copyDesktopItems +, csdp ? null +, version, coq-version ? null +}@args: +let lib' = lib; in +let lib = import ../../../../build-support/coq/extra-lib.nix {lib = lib';}; in +with builtins; with lib; +let + release = { + "8.5pl1".sha256 = "1976ki5xjg2r907xj9p7gs0kpdinywbwcqlgxqw75dgp0hkgi00n"; + "8.5pl2".sha256 = "109rrcrx7mz0fj7725kjjghfg5ydwb24hjsa5hspa27b4caah7rh"; + "8.5pl3".sha256 = "15c3rdk59nifzihsp97z4vjxis5xmsnrvpb86qiazj143z2fmdgw"; + "8.6.0".sha256 = "148mb48zpdax56c0blfi7v67lx014lnmrvxxasi28hsibyz2lvg4"; + "8.6.0".rev = "V8.6"; + "8.6.1".sha256 = "0llrxcxwy5j87vbbjnisw42rfw1n1pm5602ssx64xaxx3k176g6l"; + "8.7.0".sha256 = "1h18b7xpnx3ix9vsi5fx4zdcbxy7bhra7gd5c5yzxmk53cgf1p9m"; + "8.7.1".sha256 = "0gjn59jkbxwrihk8fx9d823wjyjh5m9gvj9l31nv6z6bcqhgdqi8"; + "8.7.2".sha256 = "0a0657xby8wdq4aqb2xsxp3n7pmc2w4yxjmrb2l4kccs1aqvaj4w"; + "8.8.0".sha256 = "13a4fka22hdxsjk11mgjb9ffzplfxyxp1sg5v1c8nk1grxlscgw8"; + "8.8.1".sha256 = "1hlf58gwazywbmfa48219amid38vqdl94yz21i11b4map6jfwhbk"; + "8.8.2".sha256 = "1lip3xja924dm6qblisk1bk0x8ai24s5xxqxphbdxj6djglj68fd"; + "8.9.0".sha256 = "1dkgdjc4n1m15m1p724hhi5cyxpqbjw6rxc5na6fl3v4qjjfnizh"; + "8.9.1".sha256 = "1xrq6mkhpq994bncmnijf8jwmwn961kkpl4mwwlv7j3dgnysrcv2"; + "8.10.0".sha256 = "138jw94wp4mg5dgjc2asn8ng09ayz1mxdznq342n0m469j803gzg"; + "8.10.1".sha256 = "072v2zkjzf7gj48137wpr3c9j0hg9pdhlr5l8jrgrwynld8fp7i4"; + "8.10.2".sha256 = "0znxmpy71bfw0p6x47i82jf5k7v41zbz9bdpn901ysn3ir8l3wrz"; + "8.11.0".sha256 = "1rfdic6mp7acx2zfwz7ziqk12g95bl9nyj68z4n20a5bcjv2pxpn"; + "8.11.1".sha256 = "0qriy9dy36dajsv5qmli8gd6v55mah02ya334nw49ky19v7518m0"; + "8.11.2".sha256 = "0f77ccyxdgbf1nrj5fa8qvrk1cyfy06fv8gj9kzfvlcgn0cf48sa"; + "8.12.0".sha256 = "18dc7k0piv6v064zgdadpw6mkkxk7j663hb3svgj5236fihjr0cz"; + "8.12.1".sha256 = "1rkcyjjrzcqw9xk93hsq0vvji4f8r5iq0f739mghk60bghkpnb7q"; + "8.12.2".sha256 = "18gscfm039pqhq4msq01nraig5dm9ab98bjca94zldf8jvdv0x2n"; + "8.13.0".sha256 = "1l2c63vskp8kiyxiyi5rpgbmnv67ysn3y4lybd6nj0li5llibifi"; + "8.13.1".sha256 = "15drjcqhsgwqnv02bbidyhk316ypyhz1pxfz2gwsalci9svhkz0v"; + "8.13.2".sha256 = "14d4alp35hngvga9m7cfp5d1nl62xdj0nm4811f2jjblk86gxxk4"; + "8.14.0".sha256 = "0yxjx9kq9bfpk31dc1c6a0pz0827fz7jmrcwwd4n7dc07yi0arq8"; + "8.14.1".sha256 = "0xdqiabgm4lrm6d7lw544zd8xwb1cdcavsxvwwlqq6yid2rl2yli"; + "8.15.0".sha256 = "sha256:0q7jl3bn0d1v9cwdkxykw4frccww6wbh1p8hdrfqw489mkxmh5jh"; + "8.15.1".sha256 = "sha256:1janvmnk3czimp0j5qmnfwx6509vhpjc2q7lcza1bc6dm6kn8n42"; + "8.15.2".sha256 = "sha256:0qibbvzrhsvs6w3zpkhyclndp29jnr6bs9i5skjlpp431jdjjfqd"; + "8.16.0".sha256 = "sha256-3V6kL9j2rn5FHBxq1mtmWWTZS9X5cAyvtUsS6DaM+is="; + "8.16.1".sha256 = "sha256-n7830+zfZeyYHEOGdUo57bH6bb2/SZs8zv8xJhV+iAc="; + "8.17.0".sha256 = "sha256-TGwm7S6+vkeZ8cidvp8pkiAd9tk008jvvPvYgfEOXhM="; + "8.17.1".sha256 = "sha256-x+RwkbxMg9aR0L3WSCtpIz8jwA5cJA4tXAtHMZb20y4="; + "8.18.0".sha256 = "sha256-WhiBs4nzPHQ0R24xAdM49kmxSCPOxiOVMA1iiMYunz4="; + "8.19.0".sha256 = "sha256-ixsYCvCXpBHqJ71hLQklphlwoOO3i/6w2PJjllKqf9k="; + }; + releaseRev = v: "V${v}"; + fetched = import ../../../../build-support/coq/meta-fetch/default.nix + { inherit lib stdenv fetchzip; } + { inherit release releaseRev; location = { owner = "coq"; repo = "coq";}; } + args.version; + version = fetched.version; + coq-version = args.coq-version or (if version != "dev" then versions.majorMinor version else "dev"); + coqAtLeast = v: coq-version == "dev" || versionAtLeast coq-version v; + buildIde = args.buildIde or (!coqAtLeast "8.14"); + ideFlags = optionalString (buildIde && !coqAtLeast "8.10") + "-lablgtkdir ${ocamlPackages.lablgtk}/lib/ocaml/*/site-lib/lablgtk2 -coqide opt"; + csdpPatch = lib.optionalString (csdp != null) '' + substituteInPlace plugins/micromega/sos.ml --replace "; csdp" "; ${csdp}/bin/csdp" + substituteInPlace plugins/micromega/coq_micromega.ml --replace "System.is_in_system_path \"csdp\"" "true" + ''; + ocamlPackages = if customOCamlPackages != null then customOCamlPackages + else with versions; switch coq-version [ + { case = range "8.16" "8.18"; out = ocamlPackages_4_14; } + { case = range "8.14" "8.15"; out = ocamlPackages_4_12; } + { case = range "8.11" "8.13"; out = ocamlPackages_4_10; } + { case = range "8.7" "8.10"; out = ocamlPackages_4_09; } + { case = range "8.5" "8.6"; out = ocamlPackages_4_05; } + ] ocamlPackages_4_14; + ocamlNativeBuildInputs = with ocamlPackages; [ ocaml findlib ] + ++ optional (coqAtLeast "8.14") dune_3; + ocamlPropagatedBuildInputs = [ ] + ++ optional (!coqAtLeast "8.10") ocamlPackages.camlp5 + ++ optional (!coqAtLeast "8.13") ocamlPackages.num + ++ optional (coqAtLeast "8.13") ocamlPackages.zarith; +self = stdenv.mkDerivation { + pname = "coq"; + inherit (fetched) version src; + + passthru = { + inherit coq-version; + inherit ocamlPackages ocamlNativeBuildInputs; + inherit ocamlPropagatedBuildInputs; + # For compatibility + inherit (ocamlPackages) ocaml camlp5 findlib num ; + emacsBufferSetup = pkgs: '' + ; Propagate coq paths to children + (inherit-local-permanent coq-prog-name "${self}/bin/coqtop") + (inherit-local-permanent coq-dependency-analyzer "${self}/bin/coqdep") + (inherit-local-permanent coq-compiler "${self}/bin/coqc") + ; If the coq-library path was already set, re-set it based on our current coq + (when (fboundp 'get-coq-library-directory) + (inherit-local-permanent coq-library-directory (get-coq-library-directory)) + (coq-prog-args)) + (mapc (lambda (arg) + (when (file-directory-p (concat arg "/lib/coq/${coq-version}/user-contrib")) + (setenv "COQPATH" (concat (getenv "COQPATH") ":" arg "/lib/coq/${coq-version}/user-contrib")))) '(${concatStringsSep " " (map (pkg: "\"${pkg}\"") pkgs)})) + ; TODO Abstract this pattern from here and nixBufferBuilders.withPackages! + (defvar nixpkgs--coq-buffer-count 0) + (when (eq nixpkgs--coq-buffer-count 0) + (make-variable-buffer-local 'nixpkgs--is-nixpkgs-coq-buffer) + (defun nixpkgs--coq-inherit (buf) + (inherit-local-inherit-child buf) + (with-current-buffer buf + (setq nixpkgs--coq-buffer-count (1+ nixpkgs--coq-buffer-count)) + (add-hook 'kill-buffer-hook 'nixpkgs--decrement-coq-buffer-count nil t)) + buf) + ; When generating a scomint buffer, do inherit-local inheritance and make it a nixpkgs-coq buffer + (defun nixpkgs--around-scomint-make (orig &rest r) + (if nixpkgs--is-nixpkgs-coq-buffer + (progn + (advice-add 'get-buffer-create :filter-return #'nixpkgs--coq-inherit) + (apply orig r) + (advice-remove 'get-buffer-create #'nixpkgs--coq-inherit)) + (apply orig r))) + (advice-add 'scomint-make :around #'nixpkgs--around-scomint-make) + ; When we have no more coq buffers, tear down the buffer handling + (defun nixpkgs--decrement-coq-buffer-count () + (setq nixpkgs--coq-buffer-count (1- nixpkgs--coq-buffer-count)) + (when (eq nixpkgs--coq-buffer-count 0) + (advice-remove 'scomint-make #'nixpkgs--around-scomint-make) + (fmakunbound 'nixpkgs--around-scomint-make) + (fmakunbound 'nixpkgs--coq-inherit) + (fmakunbound 'nixpkgs--decrement-coq-buffer-count)))) + (setq nixpkgs--coq-buffer-count (1+ nixpkgs--coq-buffer-count)) + (add-hook 'kill-buffer-hook 'nixpkgs--decrement-coq-buffer-count nil t) + (setq nixpkgs--is-nixpkgs-coq-buffer t) + (inherit-local 'nixpkgs--is-nixpkgs-coq-buffer) + ''; + }; + + nativeBuildInputs = [ pkg-config ] + ++ ocamlNativeBuildInputs + ++ optional buildIde copyDesktopItems + ++ optional (buildIde && coqAtLeast "8.10") wrapGAppsHook + ++ optional (!coqAtLeast "8.6") gnumake42; + buildInputs = [ ncurses ] + ++ optionals buildIde + (if coqAtLeast "8.10" + then [ ocamlPackages.lablgtk3-sourceview3 glib gnome.adwaita-icon-theme ] + else [ ocamlPackages.lablgtk ]) + ; + + propagatedBuildInputs = ocamlPropagatedBuildInputs; + + postPatch = '' + UNAME=$(type -tp uname) + RM=$(type -tp rm) + substituteInPlace tools/beautify-archive --replace "/bin/rm" "$RM" + ${lib.optionalString (!coqAtLeast "8.7") "substituteInPlace configure.ml --replace \"md5 -q\" \"md5sum\""} + ${csdpPatch} + ''; + + setupHook = writeText "setupHook.sh" '' + addCoqPath () { + if test -d "''$1/lib/coq/${coq-version}/user-contrib"; then + export COQPATH="''${COQPATH-}''${COQPATH:+:}''$1/lib/coq/${coq-version}/user-contrib/" + fi + } + + addEnvHooks "$targetOffset" addCoqPath + ''; + + preConfigure = if coqAtLeast "8.10" then '' + patchShebangs dev/tools/ + '' else '' + configureFlagsArray=( + ${ideFlags} + ) + ''; + + prefixKey = "-prefix "; + + buildFlags = [ "revision" "coq" ] ++ optional buildIde "coqide" ++ optional (!coqAtLeast "8.14") "bin/votour"; + enableParallelBuilding = true; + + createFindlibDestdir = true; + + desktopItems = optional buildIde (makeDesktopItem { + name = "coqide"; + exec = "coqide"; + icon = "coq"; + desktopName = "CoqIDE"; + comment = "Graphical interface for the Coq proof assistant"; + categories = [ "Development" "Science" "Math" "IDE" "GTK" ]; + }); + + postInstall = let suffix = optionalString (coqAtLeast "8.14") "-core"; in optionalString (!coqAtLeast "8.17") '' + cp bin/votour $out/bin/ + '' + '' + ln -s $out/lib/coq${suffix} $OCAMLFIND_DESTDIR/coq${suffix} + '' + optionalString (coqAtLeast "8.14") '' + ln -s $out/lib/coqide-server $OCAMLFIND_DESTDIR/coqide-server + '' + optionalString buildIde '' + mkdir -p "$out/share/pixmaps" + ln -s "$out/share/coq/coq.png" "$out/share/pixmaps/" + ''; + + meta = { + description = "Coq proof assistant"; + longDescription = '' + Coq is a formal proof management system. It provides a formal language + to write mathematical definitions, executable algorithms and theorems + together with an environment for semi-interactive development of + machine-checked proofs. + ''; + homepage = "https://coq.inria.fr"; + license = licenses.lgpl21; + branch = coq-version; + maintainers = with maintainers; [ roconnor thoughtpolice vbgl Zimmi48 ]; + platforms = platforms.unix; + mainProgram = "coqide"; + }; +}; in +if coqAtLeast "8.17" then self.overrideAttrs(_: { + buildPhase = '' + runHook preBuild + make dunestrap + dune build -p coq-core,coq-stdlib,coq,coqide-server${lib.optionalString buildIde ",coqide"} -j $NIX_BUILD_CORES + runHook postBuild + ''; + installPhase = '' + runHook preInstall + dune install --prefix $out coq-core coq-stdlib coq coqide-server${lib.optionalString buildIde " coqide"} + runHook postInstall + ''; +}) else self diff --git a/nixpkgs/pkgs/applications/science/logic/cryptominisat/default.nix b/nixpkgs/pkgs/applications/science/logic/cryptominisat/default.nix new file mode 100644 index 000000000000..a028803db139 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cryptominisat/default.nix @@ -0,0 +1,30 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, python3 +, boost +}: + +stdenv.mkDerivation rec { + pname = "cryptominisat"; + version = "5.11.15"; + + src = fetchFromGitHub { + owner = "msoos"; + repo = "cryptominisat"; + rev = version; + hash = "sha256-OenuIPo5U0+egWMpxfaKWPLbO5YRQJSXLYptih+ZQQ0="; + }; + + buildInputs = [ python3 boost ]; + nativeBuildInputs = [ cmake ]; + + meta = with lib; { + description = "An advanced SAT Solver"; + homepage = "https://github.com/msoos/cryptominisat"; + license = licenses.mit; + maintainers = with maintainers; [ mic92 ]; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cryptoverif/default.nix b/nixpkgs/pkgs/applications/science/logic/cryptoverif/default.nix new file mode 100644 index 000000000000..5c15b8a17241 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cryptoverif/default.nix @@ -0,0 +1,50 @@ +{ lib, stdenv, fetchurl, ocaml }: + +stdenv.mkDerivation rec { + pname = "cryptoverif"; + version = "2.08pl1"; + + src = fetchurl { + url = "http://prosecco.gforge.inria.fr/personal/bblanche/cryptoverif/cryptoverif${version}.tar.gz"; + hash = "sha256-rmORSZuhds9W2WpNgYf4AJM2jgEUPoJit4G64qLqj5w="; + }; + + /* Fix up the frontend to load the 'default' cryptoverif library + ** from under $out/libexec. By default, it expects to find the files + ** in $CWD which doesn't work. */ + postPatch = '' + substituteInPlace ./src/syntax.ml \ + --replace \"default\" \"$out/libexec/default\" + ''; + + strictDeps = true; + + nativeBuildInputs = [ ocaml ]; + + buildPhase = '' + runHook preBuild + + ./build + + runHook postBuild + ''; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin $out/libexec + cp ./cryptoverif $out/bin + cp ./default.cvl $out/libexec + cp ./default.ocvl $out/libexec + + runHook postInstall + ''; + + meta = { + description = "Cryptographic protocol verifier in the computational model"; + homepage = "https://prosecco.gforge.inria.fr/personal/bblanche/cryptoverif/"; + license = lib.licenses.cecill-b; + platforms = lib.platforms.unix; + maintainers = [ lib.maintainers.thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cubicle/default.nix b/nixpkgs/pkgs/applications/science/logic/cubicle/default.nix new file mode 100644 index 000000000000..c9382c5d0f1a --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cubicle/default.nix @@ -0,0 +1,45 @@ +{ lib +, stdenv +, fetchurl +, autoreconfHook +, which +, ocamlPackages +}: + +stdenv.mkDerivation rec { + pname = "cubicle"; + version = "1.2.0"; + src = fetchurl { + url = "https://github.com/cubicle-model-checker/cubicle/archive/refs/tags/${version}.tar.gz"; + hash = "sha256-/EtbXpyXqRm0jGcMfGLAEwdr92061edjFys1V7/w6/Y="; + }; + + strictDeps = true; + + nativeBuildInputs = [ + autoreconfHook + which + ] ++ (with ocamlPackages; [ + findlib + ocaml + ]); + + buildInputs = with ocamlPackages; [ + functory + num + ]; + + # https://github.com/cubicle-model-checker/cubicle/issues/1 + env = { + OCAMLC = "ocamlfind ocamlc -package num"; + OCAMLOPT = "ocamlfind ocamlopt -package num"; + }; + + meta = with lib; { + description = "An open source model checker for verifying safety properties of array-based systems"; + homepage = "https://cubicle.lri.fr/"; + license = licenses.asl20; + platforms = platforms.unix; + maintainers = with maintainers; [ dwarfmaster ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cvc3/cvc3-2.4.1-gccv6-fix.patch b/nixpkgs/pkgs/applications/science/logic/cvc3/cvc3-2.4.1-gccv6-fix.patch new file mode 100644 index 000000000000..1fb3516b8c27 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cvc3/cvc3-2.4.1-gccv6-fix.patch @@ -0,0 +1,76 @@ +commit 4eb28b907e89be05d92eb704115f821b9b848e60 +Author: Matthew Dawson <matthew@mjdsystems.ca> +Date: Sun Oct 16 22:06:03 2016 -0400 + + Fix gcc v6 compile failures. + + * Use std::hash<const char*> over std::hash<char *>, as throwing away the const is not allowed. + * Use Hash::hash by default in CDMap over std::hash, to get Hash::hash<CVC3::expr> + +diff --git a/src/expr/expr_value.cpp b/src/expr/expr_value.cpp +index 0c85ff6..e4dd251 100644 +--- a/src/expr/expr_value.cpp ++++ b/src/expr/expr_value.cpp +@@ -29,7 +29,7 @@ namespace CVC3 { + // Class ExprValue static members + //////////////////////////////////////////////////////////////////////// + +-std::hash<char*> ExprValue::s_charHash; ++std::hash<const char*> ExprValue::s_charHash; + std::hash<long int> ExprValue::s_intHash; + + //////////////////////////////////////////////////////////////////////// +diff --git a/src/include/cdmap.h b/src/include/cdmap.h +index faf682a..c3b094c 100644 +--- a/src/include/cdmap.h ++++ b/src/include/cdmap.h +@@ -43,9 +43,9 @@ namespace CVC3 { + // Auxiliary class: almost the same as CDO (see cdo.h), but on + // setNull() call it erases itself from the map. + +-template <class Key, class Data, class HashFcn = std::hash<Key> > class CDMap; ++template <class Key, class Data, class HashFcn = Hash::hash<Key> > class CDMap; + +-template <class Key, class Data, class HashFcn = std::hash<Key> > ++template <class Key, class Data, class HashFcn = Hash::hash<Key> > + class CDOmap :public ContextObj { + Key d_key; + Data d_data; +diff --git a/src/include/expr_hash.h b/src/include/expr_hash.h +index b2107d7..baa2eab 100644 +--- a/src/include/expr_hash.h ++++ b/src/include/expr_hash.h +@@ -20,7 +20,6 @@ + * hash_set over Expr class. + */ + /*****************************************************************************/ +- + #ifndef _cvc3__expr_h_ + #include "expr.h" + #endif +diff --git a/src/include/expr_value.h b/src/include/expr_value.h +index 95102b2..f53aa4d 100644 +--- a/src/include/expr_value.h ++++ b/src/include/expr_value.h +@@ -179,7 +179,7 @@ protected: + // Static hash functions. They don't depend on the context + // (ExprManager and such), so it is still thread-safe to have them + // static. +- static std::hash<char*> s_charHash; ++ static std::hash<const char*> s_charHash; + static std::hash<long int> s_intHash; + + static size_t pointerHash(void* p) { return s_intHash((long int)p); } +diff --git a/src/theory_core/theory_core.cpp b/src/theory_core/theory_core.cpp +index df5289f..37ccab9 100644 +--- a/src/theory_core/theory_core.cpp ++++ b/src/theory_core/theory_core.cpp +@@ -710,7 +710,7 @@ TheoryCore::TheoryCore(ContextManager* cm, + // d_termTheorems(cm->getCurrentContext()), + d_predicates(cm->getCurrentContext()), + d_solver(NULL), +- d_simplifyInPlace(false), ++ d_simplifyInPlace(NULL), + d_currentRecursiveSimplifier(NULL), + d_resourceLimit(0), + d_timeBase(0), diff --git a/nixpkgs/pkgs/applications/science/logic/cvc3/default.nix b/nixpkgs/pkgs/applications/science/logic/cvc3/default.nix new file mode 100644 index 000000000000..0385909610e6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cvc3/default.nix @@ -0,0 +1,42 @@ +{ lib, stdenv, fetchurl, flex, bison, gmp, perl }: + +stdenv.mkDerivation rec { + pname = "cvc3"; + version = "2.4.1"; + + src = fetchurl { + url = "https://cs.nyu.edu/acsys/cvc3/releases/${version}/${pname}-${version}.tar.gz"; + sha256 = "1xxcwhz3y6djrycw8sm6xz83wb4hb12rd1n0skvc7fng0rh1snym"; + }; + + buildInputs = [ gmp flex bison perl ]; + + patches = [ ./cvc3-2.4.1-gccv6-fix.patch ]; + + # fails to configure on darwin due to gmp not found + configureFlags = [ "LIBS=-L${gmp}/lib" "CXXFLAGS=-I${gmp.dev}/include" ]; + + postPatch = '' + sed -e "s@ /bin/bash@bash@g" -i Makefile.std + find . -exec sed -e "s@/usr/bin/perl@${perl}/bin/perl@g" -i '{}' ';' + + # bison 3.7 workaround + for f in parsePL parseLisp parsesmtlib parsesmtlib2 ; do + ln -s ../parser/''${f}_defs.h src/include/''${f}.hpp + done + ''; + + meta = with lib; { + description = "A prover for satisfiability modulo theory (SMT)"; + maintainers = with maintainers; + [ raskin ]; + platforms = platforms.unix; + license = licenses.free; + homepage = "https://cs.nyu.edu/acsys/cvc3/index.html"; + }; + passthru = { + updateInfo = { + downloadPage = "https://cs.nyu.edu/acsys/cvc3/download.html"; + }; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cvc4/cvc4-bash-patsub-replacement.patch b/nixpkgs/pkgs/applications/science/logic/cvc4/cvc4-bash-patsub-replacement.patch new file mode 100644 index 000000000000..a97665c2f86c --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cvc4/cvc4-bash-patsub-replacement.patch @@ -0,0 +1,39 @@ +Per https://bodhi.fedoraproject.org/updates/FEDORA-2022-dc47174c36: + +This update fixes a failure to build with source with bash 5.2. Bash's +`patsub_replacement` feature makes ampersand a special character when doing +variable substitution, which was not previously the case. This update instructs +bash to turn off the new behavior. + +The patch itself is adapted from +https://src.fedoraproject.org/rpms/cvc4/blob/f7c24c6ad72a8812d244313f13032fa23d393315/f/cvc4-bash-patsub-replacement.patch. +--- a/src/expr/mkexpr 2020-06-19 10:59:27.000000000 -0600 ++++ b/src/expr/mkexpr 2022-10-11 14:28:31.120453409 -0600 +@@ -16,6 +16,7 @@ + # + + copyright=2010-2014 ++shopt -u patsub_replacement + + filename=`basename "$1" | sed 's,_template,,'` + +--- a/src/expr/mkkind 2020-06-19 10:59:27.000000000 -0600 ++++ b/src/expr/mkkind 2022-10-11 14:34:17.008996126 -0600 +@@ -15,6 +15,7 @@ + # + + copyright=2010-2014 ++shopt -u patsub_replacement + + filename=`basename "$1" | sed 's,_template,,'` + +--- a/src/expr/mkmetakind 2020-06-19 10:59:27.000000000 -0600 ++++ b/src/expr/mkmetakind 2022-10-11 14:34:32.248020036 -0600 +@@ -18,6 +18,7 @@ + # + + copyright=2010-2014 ++shopt -u patsub_replacement + + cat <<EOF + /********************* */ diff --git a/nixpkgs/pkgs/applications/science/logic/cvc4/default.nix b/nixpkgs/pkgs/applications/science/logic/cvc4/default.nix new file mode 100644 index 000000000000..1513c7477985 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cvc4/default.nix @@ -0,0 +1,48 @@ +{ lib, stdenv, fetchFromGitHub, cmake, cln, gmp, git, swig, pkg-config +, readline, libantlr3c, boost, jdk, python3, antlr3_4 +}: + +stdenv.mkDerivation rec { + pname = "cvc4"; + version = "1.8"; + + src = fetchFromGitHub { + owner = "cvc4"; + repo = "cvc4"; + rev = version; + sha256 = "1rhs4pvzaa1wk00czrczp58b2cxfghpsnq534m0l3snnya2958jp"; + }; + + nativeBuildInputs = [ pkg-config cmake ]; + buildInputs = [ gmp git python3.pkgs.toml readline swig libantlr3c antlr3_4 boost jdk python3 ] + ++ lib.optionals (!stdenv.isDarwin) [ cln ]; + configureFlags = [ + "--enable-language-bindings=c,c++,java" + "--enable-gpl" + "--with-readline" + "--with-boost=${boost.dev}" + ] ++ lib.optionals (!stdenv.isDarwin) [ "--with-cln" ]; + + prePatch = '' + patch -p1 -i ${./minisat-fenv.patch} -d src/prop/minisat + patch -p1 -i ${./minisat-fenv.patch} -d src/prop/bvminisat + ''; + + patches = [ + ./cvc4-bash-patsub-replacement.patch + ]; + + preConfigure = '' + patchShebangs ./src/ + ''; + + cmakeBuildType = "Production"; + + meta = with lib; { + description = "A high-performance theorem prover and SMT solver"; + homepage = "http://cvc4.cs.stanford.edu/web/"; + license = licenses.gpl3; + platforms = platforms.unix; + maintainers = with maintainers; [ vbgl thoughtpolice gebner ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/cvc4/minisat-fenv.patch b/nixpkgs/pkgs/applications/science/logic/cvc4/minisat-fenv.patch new file mode 100644 index 000000000000..686d5a1c5b49 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cvc4/minisat-fenv.patch @@ -0,0 +1,65 @@ +From 7f1016ceab9b0f57a935bd51ca6df3d18439b472 Mon Sep 17 00:00:00 2001 +From: Will Dietz <w@wdtz.org> +Date: Tue, 17 Oct 2017 22:57:02 -0500 +Subject: [PATCH] use fenv instead of non-standard fpu_control + +--- + core/Main.cc | 8 ++++++-- + simp/Main.cc | 8 ++++++-- + utils/System.h | 2 +- + 3 files changed, 13 insertions(+), 5 deletions(-) + +diff --git a/core/Main.cc b/core/Main.cc +index 2b0d97b..8ad95fb 100644 +--- a/core/Main.cc ++++ b/core/Main.cc +@@ -78,8 +78,12 @@ int main(int argc, char** argv) + // printf("This is MiniSat 2.0 beta\n"); + + #if defined(__linux__) +- fpu_control_t oldcw, newcw; +- _FPU_GETCW(oldcw); newcw = (oldcw & ~_FPU_EXTENDED) | _FPU_DOUBLE; _FPU_SETCW(newcw); ++ fenv_t fenv; ++ ++ fegetenv(&fenv); ++ fenv.__control_word &= ~0x300; /* _FPU_EXTENDED */ ++ fenv.__control_word |= 0x200; /* _FPU_DOUBLE */ ++ fesetenv(&fenv); + printf("WARNING: for repeatability, setting FPU to use double precision\n"); + #endif + // Extra options: +diff --git a/simp/Main.cc b/simp/Main.cc +index 2804d7f..39bfb71 100644 +--- a/simp/Main.cc ++++ b/simp/Main.cc +@@ -79,8 +79,12 @@ int main(int argc, char** argv) + // printf("This is MiniSat 2.0 beta\n"); + + #if defined(__linux__) +- fpu_control_t oldcw, newcw; +- _FPU_GETCW(oldcw); newcw = (oldcw & ~_FPU_EXTENDED) | _FPU_DOUBLE; _FPU_SETCW(newcw); ++ fenv_t fenv; ++ ++ fegetenv(&fenv); ++ fenv.__control_word &= ~0x300; /* _FPU_EXTENDED */ ++ fenv.__control_word |= 0x200; /* _FPU_DOUBLE */ ++ fesetenv(&fenv); + printf("WARNING: for repeatability, setting FPU to use double precision\n"); + #endif + // Extra options: +diff --git a/utils/System.h b/utils/System.h +index 1758192..c0ad13a 100644 +--- a/utils/System.h ++++ b/utils/System.h +@@ -22,7 +22,7 @@ OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWA + #define Minisat_System_h + + #if defined(__linux__) +-#include <fpu_control.h> ++#include <fenv.h> + #endif + + #include "mtl/IntTypes.h" +-- +2.14.2 + diff --git a/nixpkgs/pkgs/applications/science/logic/cvc5/default.nix b/nixpkgs/pkgs/applications/science/logic/cvc5/default.nix new file mode 100644 index 000000000000..4da837ca46f6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/cvc5/default.nix @@ -0,0 +1,38 @@ +{ lib, stdenv, fetchFromGitHub, pkg-config, cmake, flex, cadical, symfpu, gmp, python3, gtest, libantlr3c, antlr3_4, boost, jdk }: + +stdenv.mkDerivation rec { + pname = "cvc5"; + version = "1.1.1"; + + src = fetchFromGitHub { + owner = "cvc5"; + repo = "cvc5"; + rev = "cvc5-${version}"; + hash = "sha256-TU2ZG6/9bXRPozvEVUiSWixImY38iavD3huhSU8DbCw="; + }; + + nativeBuildInputs = [ pkg-config cmake flex ]; + buildInputs = [ + cadical.dev symfpu gmp gtest libantlr3c antlr3_4 boost jdk + (python3.withPackages (ps: with ps; [ pyparsing tomli ])) + ]; + + preConfigure = '' + patchShebangs ./src/ + ''; + + cmakeBuildType = "Production"; + + cmakeFlags = [ + "-DBUILD_SHARED_LIBS=1" + "-DANTLR3_JAR=${antlr3_4}/lib/antlr/antlr-3.4-complete.jar" + ]; + + meta = with lib; { + description = "A high-performance theorem prover and SMT solver"; + homepage = "https://cvc5.github.io"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = with maintainers; [ shadaj ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/dafny/default.nix b/nixpkgs/pkgs/applications/science/logic/dafny/default.nix new file mode 100644 index 000000000000..5f56d612ab24 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/dafny/default.nix @@ -0,0 +1,65 @@ +{ lib +, buildDotnetModule +, fetchFromGitHub +, writeScript +, jdk11 +, z3 +}: + +buildDotnetModule rec { + pname = "Dafny"; + version = "4.4.0"; + + src = fetchFromGitHub { + owner = "dafny-lang"; + repo = "dafny"; + rev = "v${version}"; + hash = "sha256-rnPZms60vRtefEV+3IeVXoZJU9WMjVxPVioRaEcyw/o="; + }; + + postPatch = '' + cp ${ + writeScript "fake-gradlew-for-dafny" '' + mkdir -p build/libs/ + javac $(find -name "*.java" | grep "^./src/main") -d classes + jar cf build/libs/DafnyRuntime-${version}.jar -C classes dafny + ''} Source/DafnyRuntime/DafnyRuntimeJava/gradlew + + # Needed to fix + # "error NETSDK1129: The 'Publish' target is not supported without + # specifying a target framework. The current project targets multiple + # frameworks, you must specify the framework for the published + # application." + substituteInPlace Source/DafnyRuntime/DafnyRuntime.csproj \ + --replace TargetFrameworks TargetFramework \ + --replace "netstandard2.0;net452" net6.0 + ''; + + buildInputs = [ jdk11 ]; + nugetDeps = ./deps.nix; + + # Build just these projects. Building Source/Dafny.sln includes a bunch of + # unnecessary components like tests. + projectFile = [ + "Source/Dafny/Dafny.csproj" + "Source/DafnyRuntime/DafnyRuntime.csproj" + "Source/DafnyLanguageServer/DafnyLanguageServer.csproj" + ]; + + executables = [ "Dafny" ]; + + # Help Dafny find z3 + makeWrapperArgs = [ "--prefix PATH : ${lib.makeBinPath [ z3 ]}" ]; + + postFixup = '' + ln -s "$out/bin/Dafny" "$out/bin/dafny" || true + ''; + + meta = with lib; { + description = "A programming language with built-in specification constructs"; + homepage = "https://research.microsoft.com/dafny"; + maintainers = with maintainers; [ layus ]; + license = licenses.mit; + platforms = with platforms; (linux ++ darwin); + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/dafny/deps.nix b/nixpkgs/pkgs/applications/science/logic/dafny/deps.nix new file mode 100644 index 000000000000..a786d8b3d6fd --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/dafny/deps.nix @@ -0,0 +1,184 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + +{ fetchNuGet }: [ + (fetchNuGet { pname = "Boogie"; 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+ + installPhase = '' + install -Dt $out/bin drat-trim lrat-check + ''; + + meta = with lib; { + description = "A proof checker for unSAT proofs"; + longDescription = '' + DRAT-trim is a satisfiability proof checking and trimming + utility designed to validate proofs for all known satisfiability + solving and preprocessing techniques. DRAT-trim can also emit + trimmed formulas, optimized proofs, and TraceCheck+ dependency + graphs. + + DRAT-trim has been used as part of the judging process in the + annual SAT Competition in recent years, in order to check + competing SAT solvers' work when they claim that a SAT instance + is unsatisfiable. + + This package also contains the related tool LRAT-check, which checks a + proof format called LRAT which extends DRAT with hint statements to speed + up the checking process. + ''; + homepage = "https://www.cs.utexas.edu/~marijn/drat-trim/"; + license = licenses.mit; + maintainers = with maintainers; [ kini ]; + platforms = platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/easycrypt/default.nix b/nixpkgs/pkgs/applications/science/logic/easycrypt/default.nix new file mode 100644 index 000000000000..2869bcd6e1e3 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/easycrypt/default.nix @@ -0,0 +1,55 @@ +{ lib, stdenv, fetchFromGitHub, 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mode 100644 index 000000000000..ab5653b50912 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/egglog/default.nix @@ -0,0 +1,32 @@ +{ lib +, rustPlatform +, fetchFromGitHub +}: + +rustPlatform.buildRustPackage { + pname = "egglog"; + version = "0-unstable-2024-01-26"; + + src = fetchFromGitHub { + owner = "egraphs-good"; + repo = "egglog"; + rev = "b78f69ca1f7187c363bb31271c8e8958f477f15d"; + hash = "sha256-/1ktyz8wU1yLTdAFPnupK6jUFjiK6nQfotGRNOWiOsA="; + }; + + useNextest = true; + + cargoLock = { + lockFile = ./Cargo.lock; + outputHashes = { + "generic_symbolic_expressions-5.0.3" = "sha256-UX6fS470YJMdNnn0GR3earMGQK3p/YvaFia7IEvGGKg="; + }; + }; + + meta = with lib; { + description = "A fixpoint reasoning system that unifies Datalog and equality saturation"; + homepage = "https://github.com/egraphs-good/egglog"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/ekrhyper/default.nix b/nixpkgs/pkgs/applications/science/logic/ekrhyper/default.nix new file mode 100644 index 000000000000..4a5124b23582 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/ekrhyper/default.nix @@ -0,0 +1,24 @@ +{ lib, stdenv, fetchurl, ocaml, perl }: + +stdenv.mkDerivation rec { + pname = "ekrhyper"; + version = "1_4_21022014"; + + src = fetchurl { + url = "http://userpages.uni-koblenz.de/~bpelzer/ekrhyper/ekrh_${version}.tar.gz"; + sha256 = "sha256-fEe0DIMGj7wO+79/BZf45kykgyTXpbZJsyFSt31XqpM="; + }; + + strictDeps = true; + nativeBuildInputs = [ ocaml perl ]; + setSourceRoot = "export sourceRoot=$(echo */ekrh/src)"; + preInstall = "export INSTALLDIR=$out"; + postInstall = ''for i in "$out/casc"/*; do ln -s "$i" "$out/bin/ekrh-casc-$(basename $i)"; done ''; + + meta = with lib; { + description = "Automated first-order theorem prover"; + license = licenses.gpl2; + maintainers = with maintainers; [ raskin ]; + platforms = platforms.linux; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/elan/0001-dynamically-patchelf-binaries.patch b/nixpkgs/pkgs/applications/science/logic/elan/0001-dynamically-patchelf-binaries.patch new file mode 100644 index 000000000000..74da9d854f34 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/elan/0001-dynamically-patchelf-binaries.patch @@ -0,0 +1,40 @@ +diff --git a/src/elan-dist/src/component/package.rs b/src/elan-dist/src/component/package.rs +index c51e76d..ae8159e 100644 +--- a/src/elan-dist/src/component/package.rs ++++ b/src/elan-dist/src/component/package.rs +@@ -56,6 +56,35 @@ fn unpack_without_first_dir<R: Read>(archive: &mut tar::Archive<R>, path: &Path) + entry + .unpack(&full_path) + .chain_err(|| ErrorKind::ExtractingPackage)?; ++ nix_patch_if_needed(&full_path)?; ++ } ++ ++ Ok(()) ++} ++ ++fn nix_patch_if_needed(dest_path: &Path) -> Result<()> { ++ let is_bin = matches!(dest_path.parent(), Some(p) if p.ends_with("bin")); ++ if is_bin { ++ let _ = ::std::process::Command::new("@patchelf@/bin/patchelf") ++ .arg("--set-interpreter") ++ .arg("@dynamicLinker@") ++ .arg(dest_path) ++ .output(); ++ } ++ ++ if dest_path.file_name() == Some(::std::ffi::OsStr::new("leanc")) { ++ use std::os::unix::fs::PermissionsExt; ++ let new_path = dest_path.with_extension("orig"); ++ ::std::fs::rename(dest_path, &new_path)?; ++ ::std::fs::write(dest_path, format!(r#"#! @shell@ ++LEAN_CC="${{LEAN_CC:-@cc@}}" exec -a "$0" {} "$@" -L {}/lib # use bundled libraries, but not bundled compiler that doesn't know about NIX_LDFLAGS ++"#, new_path.to_str().unwrap(), dest_path.parent().unwrap().parent().unwrap().to_str().unwrap()))?; ++ ::std::fs::set_permissions(dest_path, ::std::fs::Permissions::from_mode(0o755))?; ++ } ++ ++ if dest_path.file_name() == Some(::std::ffi::OsStr::new("llvm-ar")) { ++ ::std::fs::remove_file(dest_path)?; ++ ::std::os::unix::fs::symlink("@ar@", dest_path)?; + } + + Ok(()) diff --git a/nixpkgs/pkgs/applications/science/logic/elan/default.nix b/nixpkgs/pkgs/applications/science/logic/elan/default.nix new file mode 100644 index 000000000000..245f8db13ce6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/elan/default.nix @@ -0,0 +1,69 @@ +{ stdenv, lib, runCommand, patchelf, makeWrapper, pkg-config, curl, runtimeShell +, openssl, zlib, fetchFromGitHub, rustPlatform, libiconv }: + +rustPlatform.buildRustPackage rec { + pname = "elan"; + version = "3.1.1"; + + src = fetchFromGitHub { + owner = "leanprover"; + repo = "elan"; + rev = "v${version}"; + hash = "sha256-/g5bO3UQcg0XYm62KdoWcVQqOV3SIedWUYLufEcblmE="; + }; + + cargoHash = "sha256-f8YVUTxHX1FY2p73DlnLDtCJaG/0JImUtJFraV6ErNM="; + + nativeBuildInputs = [ pkg-config makeWrapper ]; + + OPENSSL_NO_VENDOR = 1; + buildInputs = [ curl zlib openssl ] + ++ lib.optional stdenv.isDarwin libiconv; + + buildFeatures = [ "no-self-update" ]; + + patches = lib.optionals stdenv.isLinux [ + # Run patchelf on the downloaded binaries. + # This is necessary because Lean 4 is now dynamically linked. + (runCommand "0001-dynamically-patchelf-binaries.patch" { + CC = stdenv.cc; + cc = "${stdenv.cc}/bin/cc"; + ar = "${stdenv.cc}/bin/ar"; + patchelf = patchelf; + shell = runtimeShell; + } '' + export dynamicLinker=$(cat $CC/nix-support/dynamic-linker) + substitute ${./0001-dynamically-patchelf-binaries.patch} $out \ + --subst-var patchelf \ + --subst-var dynamicLinker \ + --subst-var cc \ + --subst-var ar \ + --subst-var shell + '') + ]; + + postInstall = '' + pushd $out/bin + mv elan-init elan + for link in lean leanpkg leanchecker leanc leanmake lake; do + ln -s elan $link + done + popd + + # tries to create .elan + export HOME=$(mktemp -d) + mkdir -p "$out/share/"{bash-completion/completions,fish/vendor_completions.d,zsh/site-functions} + $out/bin/elan completions bash > "$out/share/bash-completion/completions/elan" + $out/bin/elan completions fish > "$out/share/fish/vendor_completions.d/elan.fish" + $out/bin/elan completions zsh > "$out/share/zsh/site-functions/_elan" + ''; + + meta = with lib; { + description = "Small tool to manage your installations of the Lean theorem prover"; + homepage = "https://github.com/leanprover/elan"; + changelog = "https://github.com/leanprover/elan/blob/v${version}/CHANGELOG.md"; + license = with licenses; [ asl20 /* or */ mit ]; + maintainers = with maintainers; [ gebner ]; + mainProgram = "elan"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/eprover/default.nix b/nixpkgs/pkgs/applications/science/logic/eprover/default.nix new file mode 100644 index 000000000000..d4a8b7a6b2e8 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/eprover/default.nix @@ -0,0 +1,31 @@ +{ lib, stdenv, fetchurl, which, enableHO ? false }: + +stdenv.mkDerivation rec { + pname = "eprover"; + version = "3.0.03"; + + src = fetchurl { + url = "https://wwwlehre.dhbw-stuttgart.de/~sschulz/WORK/E_DOWNLOAD/V_${version}/E.tgz"; + hash = "sha256-cS5zUe2N9Kd9uzbNpeBtvLbgUN0c3N3tGcYczK3KsdQ="; + }; + + buildInputs = [ which ]; + + preConfigure = '' + sed -e 's/ *CC *= *gcc$//' -i Makefile.vars + ''; + configureFlags = [ + "--exec-prefix=$(out)" + "--man-prefix=$(out)/share/man" + ] ++ lib.optionals enableHO [ + "--enable-ho" + ]; + + meta = with lib; { + description = "Automated theorem prover for full first-order logic with equality"; + homepage = "http://www.eprover.org/"; + license = licenses.gpl2; + maintainers = with maintainers; [ raskin gebner ]; + platforms = platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/fast-downward/default.nix b/nixpkgs/pkgs/applications/science/logic/fast-downward/default.nix new file mode 100644 index 000000000000..a73d141f45b8 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/fast-downward/default.nix @@ -0,0 +1,67 @@ +{ stdenv +, lib +, fetchFromGitHub +, cmake +, python3 +, osi +, cplex +}: + +stdenv.mkDerivation rec { + pname = "fast-downward"; + version = "23.06.0"; + + src = fetchFromGitHub { + owner = "aibasel"; + repo = "downward"; + rev = "release-${version}"; + sha256 = "sha256-yNaMyS47yxc/p5Rs/kHwD/pgjGXnHBdybYdo1GIEmA4="; + }; + + nativeBuildInputs = [ cmake python3.pkgs.wrapPython ]; + buildInputs = [ python3 osi ]; + + cmakeFlags = lib.optionals osi.withCplex [ "-DDOWNWARD_CPLEX_ROOT=${cplex}/cplex" ]; + + configurePhase = '' + python build.py release + ''; + + postPatch = '' + # Needed because the package tries to be too smart. + export CC="$(which $CC)" + export CXX="$(which $CXX)" + ''; + + installPhase = '' + install -Dm755 builds/release/bin/downward $out/libexec/fast-downward/downward + cp -r builds/release/bin/translate $out/libexec/fast-downward/ + install -Dm755 fast-downward.py $out/bin/fast-downward + mkdir -p $out/${python3.sitePackages} + cp -r driver $out/${python3.sitePackages} + + wrapPythonProgramsIn $out/bin "$out $pythonPath" + wrapPythonProgramsIn $out/libexec/fast-downward/translate "$out $pythonPath" + # Because fast-downward calls `python translate.py` we need to return wrapped scripts back. + for i in $out/libexec/fast-downward/translate/.*-wrapped; do + name="$(basename "$i")" + name1="''${name#.}" + name2="''${name1%-wrapped}" + dir="$(dirname "$i")" + dest="$dir/$name2" + echo "Moving $i to $dest" + mv "$i" "$dest" + done + + substituteInPlace $out/${python3.sitePackages}/driver/arguments.py \ + --replace 'args.build = "release"' "args.build = \"$out/libexec/fast-downward\"" + ''; + + meta = with lib; { + description = "A domain-independent planning system"; + homepage = "https://www.fast-downward.org/"; + license = licenses.gpl3Plus; + platforms = platforms.unix; + maintainers = with maintainers; [ abbradar ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/formula/default.nix b/nixpkgs/pkgs/applications/science/logic/formula/default.nix new file mode 100644 index 000000000000..20267e6071c5 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/formula/default.nix @@ -0,0 +1,35 @@ +{ lib, stdenv, fetchFromGitHub, buildDotnetModule, dotnetCorePackages, unstableGitUpdater }: + +buildDotnetModule rec { + pname = "formula-dotnet"; + version = "2.0"; + + src = fetchFromGitHub { + owner = "VUISIS"; + repo = "formula-dotnet"; + rev = "8ee2e6abfd4ce038e1d9cb9c8602dec1ed6c0163"; + sha256 = "sha256-2ulv//YV3OqrfFltgUCeDe4rOPC0qqJ+80/D2lIoih8="; + }; + + nugetDeps = ./nuget.nix; + projectFile = "Src/CommandLine/CommandLine.csproj"; + + postFixup = if stdenv.isLinux then '' + mv $out/bin/CommandLine $out/bin/formula + '' else lib.optionalString stdenv.isDarwin '' + makeWrapper ${dotnetCorePackages.runtime_6_0}/bin/dotnet $out/bin/formula \ + --add-flags "$out/lib/formula-dotnet/CommandLine.dll" \ + --prefix DYLD_LIBRARY_PATH : $out/lib/formula-dotnet/runtimes/macos/native + ''; + + passthru.updateScript = unstableGitUpdater { url = meta.homepage; }; + + meta = with lib; { + description = "Formal Specifications for Verification and Synthesis"; + homepage = "https://github.com/VUISIS/formula-dotnet"; + license = licenses.mspl; + maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; + mainProgram = "formula"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/formula/nuget.nix b/nixpkgs/pkgs/applications/science/logic/formula/nuget.nix new file mode 100644 index 000000000000..e3b0fe67446b --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/formula/nuget.nix @@ -0,0 +1,111 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + +{ fetchNuGet }: [ + (fetchNuGet { pname = "Antlr4.Runtime.Standard"; version = "4.7.2"; sha256 = "1pmrpsgqjfj0nzr1zqzk1m2fm0ynd4nklwq3dhvww08yjg5s0586"; }) + (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) + (fetchNuGet { pname = 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mpfr, boost }: + +stdenv.mkDerivation rec { + pname = "gappa"; + version = "1.4.0"; + + src = fetchurl { + url = "https://gforge.inria.fr/frs/download.php/file/38436/gappa-${version}.tar.gz"; + sha256 = "12x42z901pr05ldmparqdi8sq9s7fxbavhzk2dbq3l6hy247dwbb"; + }; + + buildInputs = [ gmp mpfr boost.dev ]; + + buildPhase = "./remake"; + installPhase = "./remake install"; + + meta = { + homepage = "http://gappa.gforge.inria.fr/"; + description = "Verifying and formally proving properties on numerical programs dealing with floating-point or fixed-point arithmetic"; + license = with lib.licenses; [ cecill20 gpl2 ]; + maintainers = with lib.maintainers; [ vbgl ]; + platforms = lib.platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/glucose/default.nix b/nixpkgs/pkgs/applications/science/logic/glucose/default.nix new file mode 100644 index 000000000000..512f0414f1c6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/glucose/default.nix @@ -0,0 +1,48 @@ +{ lib +, stdenv +, fetchurl +, unzip +, zlib +, enableUnfree ? false +}: + +stdenv.mkDerivation rec { + pname = "glucose" + lib.optionalString enableUnfree "-syrup"; + version = "4.2.1"; + + src = fetchurl { + url = "https://www.labri.fr/perso/lsimon/downloads/softwares/glucose-${version}.zip"; + hash = "sha256-J0J9EKC/4cCiZr/y4lz+Hm7OcmJmMIIWzQ+4c+KhqXg="; + }; + + sourceRoot = "glucose-${version}/sources/${if enableUnfree then "parallel" else "simp"}"; + + postPatch = '' + substituteInPlace Main.cc \ + --replace "defined(__linux__)" "defined(__linux__) && defined(__x86_64__)" + ''; + + nativeBuildInputs = [ unzip ]; + + buildInputs = [ zlib ]; + + makeFlags = [ "r" ]; + + installPhase = '' + runHook preInstall + + install -Dm0755 ${pname}_release $out/bin/${pname} + mkdir -p "$out/share/doc/${pname}-${version}/" + install -Dm0755 ../{LICEN?E,README*,Changelog*} "$out/share/doc/${pname}-${version}/" + + runHook postInstall + ''; + + meta = with lib; { + description = "Modern, parallel SAT solver (${if enableUnfree then "parallel" else "sequential"} version)"; + homepage = "https://www.labri.fr/perso/lsimon/research/glucose/"; + license = if enableUnfree then licenses.unfreeRedistributable else licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ gebner ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/hol/default.nix b/nixpkgs/pkgs/applications/science/logic/hol/default.nix new file mode 100644 index 000000000000..de47df098da1 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/hol/default.nix @@ -0,0 +1,88 @@ +{lib, stdenv, pkgs, fetchurl, graphviz, fontconfig, liberation_ttf, + experimentalKernel ? true}: + +let + pname = "hol4"; + vnum = "14"; +in + +let + version = "k.${vnum}"; + longVersion = "kananaskis-${vnum}"; + holsubdir = "hol-${longVersion}"; + kernelFlag = if experimentalKernel then "--expk" else "--stdknl"; +in + +let + polymlEnableShared = with pkgs; lib.overrideDerivation polyml (attrs: { + configureFlags = [ "--enable-shared" ]; + }); +in + +stdenv.mkDerivation { + name = "${pname}-${version}"; + + src = fetchurl { + url = "mirror://sourceforge/hol/hol/${longVersion}/${holsubdir}.tar.gz"; + sha256 = "6Mc/qsEjzxGqzt6yP6x/1Tmqpwc1UDGlwV1Gl+4pMsY="; + }; + + buildInputs = [polymlEnableShared graphviz fontconfig liberation_ttf]; + + buildCommand = '' + + mkdir chroot-fontconfig + cat ${fontconfig.out}/etc/fonts/fonts.conf > chroot-fontconfig/fonts.conf + sed -e 's@</fontconfig>@@' -i chroot-fontconfig/fonts.conf + echo "<dir>${liberation_ttf}</dir>" >> chroot-fontconfig/fonts.conf + echo "</fontconfig>" >> chroot-fontconfig/fonts.conf + + export FONTCONFIG_FILE=$(pwd)/chroot-fontconfig/fonts.conf + + mkdir -p "$out/src" + cd "$out/src" + + tar -xzf "$src" + cd ${holsubdir} + + substituteInPlace tools/Holmake/Holmake_types.sml \ + --replace "\"/bin/" "\"" \ + + + for f in tools/buildutils.sml help/src-sml/DOT; + do + substituteInPlace $f --replace "\"/usr/bin/dot\"" "\"${graphviz}/bin/dot\"" + done + + #sed -ie "/compute/,999 d" tools/build-sequence # for testing + + poly < tools/smart-configure.sml + + bin/build ${kernelFlag} + + mkdir -p "$out/bin" + ln -st $out/bin $out/src/${holsubdir}/bin/* + # ln -s $out/src/hol4.${version}/bin $out/bin + ''; + + meta = with lib; { + broken = (stdenv.isLinux && stdenv.isAarch64); + description = "Interactive theorem prover based on Higher-Order Logic"; + longDescription = '' + HOL4 is the latest version of the HOL interactive proof + assistant for higher order logic: a programming environment in + which theorems can be proved and proof tools + implemented. Built-in decision procedures and theorem provers + can automatically establish many simple theorems (users may have + to prove the hard theorems themselves!) An oracle mechanism + gives access to external programs such as SMT and BDD + engines. HOL4 is particularly suitable as a platform for + implementing combinations of deduction, execution and property + checking. + ''; + homepage = "http://hol.sourceforge.net/"; + license = licenses.bsd3; + platforms = platforms.unix; + maintainers = with maintainers; [ mudri ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/hol_light/default.nix b/nixpkgs/pkgs/applications/science/logic/hol_light/default.nix new file mode 100644 index 000000000000..813397ba01f9 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/hol_light/default.nix @@ -0,0 +1,65 @@ +{ lib, stdenv, runtimeShell, fetchFromGitHub, fetchpatch, ocaml, findlib, num, camlp5, camlp-streams }: + +let + load_num = + lib.optionalString (num != null) '' + -I ${num}/lib/ocaml/${ocaml.version}/site-lib/num \ + -I ${num}/lib/ocaml/${ocaml.version}/site-lib/top-num \ + -I ${num}/lib/ocaml/${ocaml.version}/site-lib/stublibs \ + ''; + + start_script = + '' + #!${runtimeShell} + cd $out/lib/hol_light + export OCAMLPATH="''${OCAMLPATH-}''${OCAMLPATH:+:}${camlp5}/lib/ocaml/${ocaml.version}/site-lib/" + exec ${ocaml}/bin/ocaml \ + -I \`${camlp5}/bin/camlp5 -where\` \ + ${load_num} \ + -I ${findlib}/lib/ocaml/${ocaml.version}/site-lib/ \ + -I ${camlp-streams}/lib/ocaml/${ocaml.version}/site-lib/camlp-streams camlp_streams.cma \ + -init make.ml + ''; +in + +lib.throwIf (lib.versionAtLeast ocaml.version "5.0") + "hol_light is not available for OCaml ${ocaml.version}" + +stdenv.mkDerivation { + pname = "hol_light"; + version = "unstable-2023-11-03"; + + src = fetchFromGitHub { + owner = "jrh13"; + repo = "hol-light"; + rev = "dcd765c6032f52a0c0bf21fce5da4794a823e880"; + hash = "sha256-k2RBNDo4tc3eobKB84Y2xr0UQJvef0hv6jyFCaDCQFM="; + }; + + patches = [ + (fetchpatch { + url = "https://salsa.debian.org/ocaml-team/hol-light/-/raw/master/debian/patches/0004-Fix-compilation-with-camlp5-7.11.patch"; + sha256 = "180qmxbrk3vb1ix7j77hcs8vsar91rs11s5mm8ir5352rz7ylicr"; + }) + ]; + + strictDeps = true; + + nativeBuildInputs = [ ocaml findlib camlp5 ]; + propagatedBuildInputs = [ camlp-streams num ]; + + installPhase = '' + mkdir -p "$out/lib/hol_light" "$out/bin" + cp -a . $out/lib/hol_light + echo "${start_script}" > "$out/bin/hol_light" + chmod a+x "$out/bin/hol_light" + ''; + + meta = with lib; { + description = "Interactive theorem prover based on Higher-Order Logic"; + homepage = "http://www.cl.cam.ac.uk/~jrh13/hol-light/"; + license = licenses.bsd2; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice maggesi vbgl ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/iprover/default.nix b/nixpkgs/pkgs/applications/science/logic/iprover/default.nix new file mode 100644 index 000000000000..77e5919c0eee --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/iprover/default.nix @@ -0,0 +1,46 @@ +{ lib, stdenv, fetchFromGitLab, ocamlPackages, eprover, z3, zlib }: + +stdenv.mkDerivation rec { + pname = "iprover"; + version = "3.8.1"; + + src = fetchFromGitLab { + owner = "korovin"; + repo = pname; + rev = "f61edb113b705606c7314dc4dce0687832c3169f"; + hash = "sha256-XXqbEoYKjoktE3ZBEIEFjLhA1B75zhnfPszhe8SvbI8="; + }; + + postPatch = '' + substituteInPlace configure --replace Linux Debian + ''; + + strictDeps = true; + + nativeBuildInputs = [ eprover ] ++ (with ocamlPackages; [ + ocaml findlib + ]); + buildInputs = [ zlib ocamlPackages.z3 z3 ] ++ (with ocamlPackages; [ + ocamlgraph yojson zarith + ]); + + preConfigure = "patchShebangs ."; + + installPhase = '' + runHook preInstall + mkdir -p "$out/bin" + cp iproveropt "$out/bin" + + echo -e "#! ${stdenv.shell}\\n$out/bin/iproveropt --clausifier \"${eprover}/bin/eprover\" --clausifier_options \" --tstp-format --silent --cnf \" \"\$@\"" > "$out"/bin/iprover + chmod a+x "$out"/bin/iprover + runHook postInstall + ''; + + meta = with lib; { + description = "An automated first-order logic theorem prover"; + homepage = "http://www.cs.man.ac.uk/~korovink/iprover/"; + maintainers = with maintainers; [ raskin gebner ]; + platforms = platforms.linux; + license = licenses.gpl3; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/isabelle/components/default.nix b/nixpkgs/pkgs/applications/science/logic/isabelle/components/default.nix new file mode 100644 index 000000000000..dd7b605f56af --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/isabelle/components/default.nix @@ -0,0 +1,5 @@ +{ callPackage }: + +{ + isabelle-linter = callPackage ./isabelle-linter.nix {}; +} diff --git a/nixpkgs/pkgs/applications/science/logic/isabelle/components/isabelle-linter.nix b/nixpkgs/pkgs/applications/science/logic/isabelle/components/isabelle-linter.nix new file mode 100644 index 000000000000..d9b8dd5cf28f --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/isabelle/components/isabelle-linter.nix @@ -0,0 +1,35 @@ +{ stdenv, lib, fetchFromGitHub, isabelle }: + +stdenv.mkDerivation rec { + pname = "isabelle-linter"; + version = "2023-1.0.0"; + + src = fetchFromGitHub { + owner = "isabelle-prover"; + repo = "isabelle-linter"; + rev = "Isabelle2023-v1.0.0"; + sha256 = "sha256-q9+qN94NaTzvhbcNQj7yH/VVfs1QgCH8OU8HW+5+s9U="; + }; + + nativeBuildInputs = [ isabelle ]; + + buildPhase = '' + export HOME=$TMP + isabelle components -u $(pwd) + isabelle scala_build + ''; + + installPhase = '' + dir=$out/Isabelle${isabelle.version}/contrib/${pname}-${version} + mkdir -p $dir + cp -r * $dir/ + ''; + + meta = with lib; { + description = "Linter component for Isabelle."; + homepage = "https://github.com/isabelle-prover/isabelle-linter"; + maintainers = with maintainers; [ jvanbruegge ]; + license = licenses.mit; + platforms = platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/isabelle/default.nix b/nixpkgs/pkgs/applications/science/logic/isabelle/default.nix new file mode 100644 index 000000000000..edc4483bcfa9 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/isabelle/default.nix @@ -0,0 +1,251 @@ +{ lib +, stdenv +, fetchurl +, coreutils +, nettools +, java +, scala_3 +, polyml +, veriT +, vampire +, eprover-ho +, naproche +, rlwrap +, perl +, makeDesktopItem +, isabelle-components +, symlinkJoin +, fetchhg +}: + +let + sha1 = stdenv.mkDerivation { + pname = "isabelle-sha1"; + version = "2021-1"; + + src = fetchhg { + url = "https://isabelle.sketis.net/repos/sha1"; + rev = "e0239faa6f42"; + sha256 = "sha256-4sxHzU/ixMAkSo67FiE6/ZqWJq9Nb9OMNhMoXH2bEy4="; + }; + + buildPhase = (if stdenv.isDarwin then '' + LDFLAGS="-dynamic -undefined dynamic_lookup -lSystem" + '' else '' + LDFLAGS="-fPIC -shared" + '') + '' + CFLAGS="-fPIC -I." + $CC $CFLAGS -c sha1.c -o sha1.o + $LD $LDFLAGS sha1.o -o libsha1.so + ''; + + installPhase = '' + mkdir -p $out/lib + cp libsha1.so $out/lib/ + ''; + }; +in stdenv.mkDerivation (finalAttrs: rec { + pname = "isabelle"; + version = "2023"; + + dirname = "Isabelle${version}"; + + src = + if stdenv.isDarwin + then + fetchurl + { + url = "https://isabelle.in.tum.de/website-${dirname}/dist/${dirname}_macos.tar.gz"; + sha256 = "sha256-0VSW2SrHNI3/k4cCCZ724ruXaq7W1NCPsLrXFZ9l1/Q="; + } + else if stdenv.hostPlatform.isx86 + then + fetchurl { + url = "https://isabelle.in.tum.de/website-${dirname}/dist/${dirname}_linux.tar.gz"; + sha256 = "sha256-Go4ZCsDz5gJ7uWG5VLrNJOddMPX18G99FAadpX53Rqg="; + } + else + fetchurl { + url = "https://isabelle.in.tum.de/website-${dirname}/dist/${dirname}_linux_arm.tar.gz"; + hash = "sha256-Tzxxs0gKw6vymbaXIzH8tK5VgUrpOIp9vcWQ/zxnRCc="; + }; + + nativeBuildInputs = [ java ]; + + buildInputs = [ polyml veriT vampire eprover-ho nettools ] + ++ lib.optionals (!stdenv.isDarwin) [ java ]; + + sourceRoot = "${dirname}${lib.optionalString stdenv.isDarwin ".app"}"; + + doCheck = stdenv.hostPlatform.system != "aarch64-linux"; + checkPhase = "bin/isabelle build -v HOL-SMT_Examples"; + + postUnpack = lib.optionalString stdenv.isDarwin '' + mv $sourceRoot ${dirname} + sourceRoot=${dirname} + ''; + + postPatch = '' + patchShebangs lib/Tools/ bin/ + + cat >contrib/verit-*/etc/settings <<EOF + ISABELLE_VERIT=${veriT}/bin/veriT + EOF + + cat >contrib/e-*/etc/settings <<EOF + E_HOME=${eprover-ho}/bin + E_VERSION=${eprover-ho.version} + EOF + + cat >contrib/vampire-*/etc/settings <<EOF + VAMPIRE_HOME=${vampire}/bin + VAMPIRE_VERSION=${vampire.version} + VAMPIRE_EXTRA_OPTIONS="--mode casc" + EOF + + cat >contrib/polyml-*/etc/settings <<EOF + ML_SYSTEM_64=true + ML_SYSTEM=${polyml.name} + ML_PLATFORM=${stdenv.system} + ML_HOME=${polyml}/bin + ML_OPTIONS="--minheap 1000" + POLYML_HOME="\$COMPONENT" + ML_SOURCES="\$POLYML_HOME/src" + EOF + + cat >contrib/jdk*/etc/settings <<EOF + ISABELLE_JAVA_PLATFORM=${stdenv.system} + ISABELLE_JDK_HOME=${java} + EOF + + '' + lib.optionalString stdenv.hostPlatform.isx86 '' + rm contrib/naproche-*/x86*/Naproche-SAD + ln -s ${naproche}/bin/Naproche-SAD contrib/naproche-*/x86*/ + '' + '' + + echo ISABELLE_LINE_EDITOR=${rlwrap}/bin/rlwrap >>etc/settings + + for comp in contrib/jdk* contrib/polyml-* contrib/verit-* contrib/vampire-* contrib/e-*; do + rm -rf $comp/${if stdenv.hostPlatform.isx86 then "x86" else "arm"}* + done + + substituteInPlace lib/Tools/env \ + --replace /usr/bin/env ${coreutils}/bin/env + + substituteInPlace src/Tools/Setup/src/Environment.java \ + --replace 'cmd.add("/usr/bin/env");' "" \ + --replace 'cmd.add("bash");' "cmd.add(\"$SHELL\");" + + substituteInPlace src/Pure/General/sha1.ML \ + --replace '"$ML_HOME/" ^ (if ML_System.platform_is_windows then "sha1.dll" else "libsha1.so")' '"${sha1}/lib/libsha1.so"' + + rm -r heaps + '' + lib.optionalString (stdenv.hostPlatform.system == "x86_64-darwin") '' + substituteInPlace lib/scripts/isabelle-platform \ + --replace 'ISABELLE_APPLE_PLATFORM64=arm64-darwin' "" + '' + lib.optionalString stdenv.isLinux '' + arch=${if stdenv.hostPlatform.system == "x86_64-linux" then "x86_64-linux" + else if stdenv.hostPlatform.isx86 then "x86-linux" + else "arm64-linux"} + for f in contrib/*/$arch/{z3,epclextract,nunchaku,SPASS,zipperposition}; do + patchelf --set-interpreter $(cat ${stdenv.cc}/nix-support/dynamic-linker) "$f"${lib.optionalString stdenv.isAarch64 " || true"} + done + patchelf --set-interpreter $(cat ${stdenv.cc}/nix-support/dynamic-linker) contrib/bash_process-*/platform_$arch/bash_process + for d in contrib/kodkodi-*/jni/$arch; do + patchelf --set-rpath "${lib.concatStringsSep ":" [ "${java}/lib/openjdk/lib/server" "${stdenv.cc.cc.lib}/lib" ]}" $d/*.so + done + patchelf --set-rpath "${stdenv.cc.cc.lib}/lib" contrib/z3-*/$arch/z3 + ''; + + buildPhase = '' + export HOME=$TMP # The build fails if home is not set + setup_name=$(basename contrib/isabelle_setup*) + + #The following is adapted from https://isabelle.sketis.net/repos/isabelle/file/Isabelle2021-1/Admin/lib/Tools/build_setup + TARGET_DIR="contrib/$setup_name/lib" + rm -rf "$TARGET_DIR" + mkdir -p "$TARGET_DIR/isabelle/setup" + declare -a ARGS=("-Xlint:unchecked") + + SOURCES="$(${perl}/bin/perl -e 'while (<>) { if (m/(\S+\.java)/) { print "$1 "; } }' "src/Tools/Setup/etc/build.props")" + for SRC in $SOURCES + do + ARGS["''${#ARGS[@]}"]="src/Tools/Setup/$SRC" + done + echo "Building isabelle setup" + javac -d "$TARGET_DIR" -classpath "${scala_3.bare}/lib/scala3-interfaces-${scala_3.version}.jar:${scala_3.bare}/lib/scala3-compiler_3-${scala_3.version}.jar" "''${ARGS[@]}" + jar -c -f "$TARGET_DIR/isabelle_setup.jar" -e "isabelle.setup.Setup" -C "$TARGET_DIR" isabelle + rm -rf "$TARGET_DIR/isabelle" + + echo "Building HOL heap" + bin/isabelle build -v -o system_heaps -b HOL + ''; + + installPhase = '' + mkdir -p $out/bin + mv $TMP/$dirname $out + cd $out/$dirname + bin/isabelle install $out/bin + + # icon + mkdir -p "$out/share/icons/hicolor/isabelle/apps" + cp "$out/Isabelle${version}/lib/icons/isabelle.xpm" "$out/share/icons/hicolor/isabelle/apps/" + + # desktop item + mkdir -p "$out/share" + cp -r "${desktopItem}/share/applications" "$out/share/applications" + ''; + + desktopItem = makeDesktopItem { + name = "isabelle"; + exec = "isabelle jedit"; + icon = "isabelle"; + desktopName = "Isabelle"; + comment = meta.description; + categories = [ "Education" "Science" "Math" ]; + }; + + meta = with lib; { + description = "A generic proof assistant"; + + longDescription = '' + Isabelle is a generic proof assistant. It allows mathematical formulas + to be expressed in a formal language and provides tools for proving those + formulas in a logical calculus. + ''; + homepage = "https://isabelle.in.tum.de/"; + sourceProvenance = with sourceTypes; [ + fromSource + binaryNativeCode # source bundles binary dependencies + ]; + license = licenses.bsd3; + maintainers = [ maintainers.jwiegley maintainers.jvanbruegge ]; + platforms = platforms.unix; + }; + + passthru.withComponents = f: + let + isabelle = finalAttrs.finalPackage; + base = "$out/${isabelle.dirname}"; + components = f isabelle-components; + in symlinkJoin { + name = "isabelle-with-components-${isabelle.version}"; + paths = [ isabelle ] ++ (builtins.map (c: c.override { inherit isabelle; }) components); + + postBuild = '' + rm $out/bin/* + + cd ${base} + rm bin/* + cp ${isabelle}/${isabelle.dirname}/bin/* bin/ + rm etc/components + cat ${isabelle}/${isabelle.dirname}/etc/components > etc/components + + export HOME=$TMP + bin/isabelle install $out/bin + patchShebangs $out/bin + '' + lib.concatMapStringsSep "\n" (c: '' + echo contrib/${c.pname}-${c.version} >> ${base}/etc/components + '') components; + }; +}) diff --git a/nixpkgs/pkgs/applications/science/logic/key/default.nix b/nixpkgs/pkgs/applications/science/logic/key/default.nix new file mode 100644 index 000000000000..5a48abfc4aa4 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/key/default.nix @@ -0,0 +1,121 @@ +{ lib, stdenv +, fetchurl +, jdk +, gradle_7 +, perl +, jre +, makeWrapper +, makeDesktopItem +, copyDesktopItems +, testers +, key +}: + +let + pname = "key"; + version = "2.10.0"; + src = fetchurl { + url = "https://www.key-project.org/dist/${version}/key-${version}-sources.tgz"; + sha256 = "1f201cbcflqd1z6ysrkh3mff5agspw3v74ybdc3s2lfdyz3b858w"; + }; + sourceRoot = "key-${version}/key"; + + # fake build to pre-download deps into fixed-output derivation + deps = stdenv.mkDerivation { + pname = "${pname}-deps"; + inherit version src sourceRoot; + nativeBuildInputs = [ gradle_7 perl ]; + buildPhase = '' + export GRADLE_USER_HOME=$(mktemp -d) + # https://github.com/gradle/gradle/issues/4426 + ${lib.optionalString stdenv.isDarwin "export TERM=dumb"} + gradle --no-daemon classes testClasses + ''; + # perl code mavenizes pathes (com.squareup.okio/okio/1.13.0/a9283170b7305c8d92d25aff02a6ab7e45d06cbe/okio-1.13.0.jar -> com/squareup/okio/okio/1.13.0/okio-1.13.0.jar) + installPhase = '' + find $GRADLE_USER_HOME/caches/modules-2 -type f -regex '.*\.\(jar\|pom\)' \ + | perl -pe 's#(.*/([^/]+)/([^/]+)/([^/]+)/[0-9a-f]{30,40}/([^/\s]+))$# ($x = $2) =~ tr|\.|/|; "install -Dm444 $1 \$out/$x/$3/$4/$5" #e' \ + | sh + ''; + outputHashMode = "recursive"; + outputHashAlgo = "sha256"; + outputHash = "sha256-GjBUwJxeyJA6vGrPQVtNpcHb4CJlNlY4kHt1PT21xjo="; + }; +in stdenv.mkDerivation rec { + inherit pname version src sourceRoot; + + nativeBuildInputs = [ + jdk + gradle_7 + makeWrapper + copyDesktopItems + ]; + + executable-name = "KeY"; + + desktopItems = [ + (makeDesktopItem { + name = "KeY"; + exec = executable-name; + icon = "key"; + comment = meta.description; + desktopName = "KeY"; + genericName = "KeY"; + categories = [ "Science" ]; + }) + ]; + + # disable tests (broken on darwin) + gradleAction = if stdenv.isDarwin then "assemble" else "build"; + + buildPhase = '' + runHook preBuild + + export GRADLE_USER_HOME=$(mktemp -d) + # https://github.com/gradle/gradle/issues/4426 + ${lib.optionalString stdenv.isDarwin "export TERM=dumb"} + # point to offline repo + sed -ie "s#repositories {#repositories { maven { url '${deps}' }#g" build.gradle + cat <(echo "pluginManagement { repositories { maven { url '${deps}' } } }") settings.gradle > settings_new.gradle + mv settings_new.gradle settings.gradle + gradle --offline --no-daemon ${gradleAction} + + runHook postBuild + ''; + + installPhase = '' + runHook preInstall + + mkdir -p $out/share/java + cp key.ui/build/libs/key-*-exe.jar $out/share/java/KeY.jar + mkdir -p $out/bin + mkdir -p $out/share/icons/hicolor/256x256/apps + cp key.ui/src/main/resources/de/uka/ilkd/key/gui/images/key-color-icon-square.png $out/share/icons/hicolor/256x256/apps/key.png + makeWrapper ${jre}/bin/java $out/bin/KeY \ + --add-flags "-cp $out/share/java/KeY.jar de.uka.ilkd.key.core.Main" + + runHook postInstall + ''; + + passthru.tests.version = + testers.testVersion { + package = key; + command = "KeY --help"; + }; + + meta = with lib; { + description = "Java formal verification tool"; + homepage = "https://www.key-project.org"; # also https://formal.iti.kit.edu/key/ + longDescription = '' + The KeY System is a formal software development tool that aims to + integrate design, implementation, formal specification, and formal + verification of object-oriented software as seamlessly as possible. + At the core of the system is a novel theorem prover for the first-order + Dynamic Logic for Java with a user-friendly graphical interface. + ''; + license = licenses.gpl2; + maintainers = with maintainers; [ fgaz ]; + mainProgram = executable-name; + platforms = platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/kissat/default.nix b/nixpkgs/pkgs/applications/science/logic/kissat/default.nix new file mode 100644 index 000000000000..d1703340527b --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/kissat/default.nix @@ -0,0 +1,53 @@ +{ lib, stdenv, fetchFromGitHub +, drat-trim, p7zip +}: + +stdenv.mkDerivation rec { + pname = "kissat"; + version = "3.1.1"; + + src = fetchFromGitHub { + owner = "arminbiere"; + repo = "kissat"; + rev = "rel-${version}"; + sha256 = "sha256-zK20/vhbVihrxmd52DjByDUO99pBAr8SlJtQpX5fmwY="; + }; + + outputs = [ "out" "dev" "lib" ]; + + nativeCheckInputs = [ drat-trim p7zip ]; + doCheck = true; + + # 'make test' assumes that /etc/passwd is not writable. + patches = [ ./writable-passwd-is-ok.patch ]; + + # the configure script is not generated by autotools and does not accept the + # arguments that the default configurePhase passes like --prefix and --libdir + dontAddPrefix = true; + setOutputFlags = false; + + installPhase = '' + runHook preInstall + + install -Dm0755 build/kissat "$out/bin/kissat" + install -Dm0644 src/kissat.h "$dev/include/kissat.h" + install -Dm0644 build/libkissat.a "$lib/lib/libkissat.a" + mkdir -p "$out/share/doc/kissat/" + install -Dm0644 {LICEN?E,README*,VERSION} "$out/share/doc/kissat/" + + runHook postInstall + ''; + + meta = with lib; { + description = "A 'keep it simple and clean bare metal SAT solver' written in C"; + longDescription = '' + Kissat is a "keep it simple and clean bare metal SAT solver" written in C. + It is a port of CaDiCaL back to C with improved data structures, + better scheduling of inprocessing and optimized algorithms and implementation. + ''; + maintainers = with maintainers; [ shnarazk ]; + platforms = platforms.unix; + license = licenses.mit; + homepage = "https://fmv.jku.at/kissat"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/kissat/writable-passwd-is-ok.patch b/nixpkgs/pkgs/applications/science/logic/kissat/writable-passwd-is-ok.patch new file mode 100644 index 000000000000..f2cca54e1d36 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/kissat/writable-passwd-is-ok.patch @@ -0,0 +1,13 @@ +diff --git a/test/testfile.c b/test/testfile.c +index cb311d5..0726244 100644 +--- a/test/testfile.c ++++ b/test/testfile.c +@@ -92,8 +92,6 @@ do { \ + WRITABLE (true, "../test/file/non-existing"); + WRITABLE (false, "/kissat-test-file-writable"); + WRITABLE (false, "non-existing-directory/file-in-non-existing-directory"); +- if (kissat_file_exists ("/etc/passwd")) +- WRITABLE (false, "/etc/passwd"); + #undef WRITABLE + } + diff --git a/nixpkgs/pkgs/applications/science/logic/klee/default.nix b/nixpkgs/pkgs/applications/science/logic/klee/default.nix new file mode 100644 index 000000000000..68f68355f816 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/klee/default.nix @@ -0,0 +1,134 @@ +{ lib +, stdenv +, callPackage +, fetchFromGitHub +, cmake +, clang +, llvm +, python3 +, zlib +, z3 +, stp +, cryptominisat +, gperftools +, sqlite +, gtest +, lit + +# Build KLEE in debug mode. Defaults to false. +, debug ? false + +# Include debug info in the build. Defaults to true. +, includeDebugInfo ? true + +# Enable KLEE asserts. Defaults to true, since LLVM is built with them. +, asserts ? true + +# Build the KLEE runtime in debug mode. Defaults to true, as this improves +# stack traces of the software under test. +, debugRuntime ? true + +# Enable runtime asserts. Default false. +, runtimeAsserts ? false + +# Extra klee-uclibc config. +, extraKleeuClibcConfig ? {} +}: + +let + # Python used for KLEE tests. + kleePython = python3.withPackages (ps: with ps; [ tabulate ]); + + # The klee-uclibc derivation. + kleeuClibc = callPackage ./klee-uclibc.nix { + inherit stdenv clang llvm extraKleeuClibcConfig debugRuntime runtimeAsserts; + }; +in stdenv.mkDerivation rec { + pname = "klee"; + version = "3.0"; + + src = fetchFromGitHub { + owner = "klee"; + repo = "klee"; + rev = "v${version}"; + hash = "sha256-y5lWmtIcLAthQ0oHYQNd+ir75YaxHZR9Jgiz+ZUFQjY="; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ + cryptominisat + gperftools + llvm + sqlite + stp + z3 + ]; + nativeCheckInputs = [ + gtest + + # Should appear BEFORE lit, since lit passes through python rather + # than the python environment we make. + kleePython + (lit.override { python = kleePython; }) + ]; + + cmakeBuildType = if debug then "Debug" else if !debug && includeDebugInfo then "RelWithDebInfo" else "MinSizeRel"; + + cmakeFlags = let + onOff = val: if val then "ON" else "OFF"; + in [ + "-DKLEE_RUNTIME_BUILD_TYPE=${if debugRuntime then "Debug" else "Release"}" + "-DLLVMCC=${clang}/bin/clang" + "-DLLVMCXX=${clang}/bin/clang++" + "-DKLEE_ENABLE_TIMESTAMP=${onOff false}" + "-DKLEE_UCLIBC_PATH=${kleeuClibc}" + "-DENABLE_KLEE_ASSERTS=${onOff asserts}" + "-DENABLE_POSIX_RUNTIME=${onOff true}" + "-DENABLE_UNIT_TESTS=${onOff true}" + "-DENABLE_SYSTEM_TESTS=${onOff true}" + "-DGTEST_SRC_DIR=${gtest.src}" + "-DGTEST_INCLUDE_DIR=${gtest.src}/googletest/include" + "-Wno-dev" + ]; + + # Silence various warnings during the compilation of fortified bitcode. + env.NIX_CFLAGS_COMPILE = toString ["-Wno-macro-redefined"]; + + prePatch = '' + patchShebangs . + ''; + + doCheck = true; + + passthru = { + # Let the user depend on `klee.uclibc` for klee-uclibc + uclibc = kleeuClibc; + }; + + meta = with lib; { + description = "A symbolic virtual machine built on top of LLVM"; + longDescription = '' + KLEE is a symbolic virtual machine built on top of the LLVM compiler + infrastructure. Currently, there are two primary components: + + 1. The core symbolic virtual machine engine; this is responsible for + executing LLVM bitcode modules with support for symbolic values. This + is comprised of the code in lib/. + + 2. A POSIX/Linux emulation layer oriented towards supporting uClibc, with + additional support for making parts of the operating system environment + symbolic. + + Additionally, there is a simple library for replaying computed inputs on + native code (for closed programs). There is also a more complicated + infrastructure for replaying the inputs generated for the POSIX/Linux + emulation layer, which handles running native programs in an environment + that matches a computed test input, including setting up files, pipes, + environment variables, and passing command line arguments. + ''; + homepage = "https://klee.github.io/"; + license = licenses.ncsa; + platforms = [ "x86_64-linux" ]; + maintainers = with maintainers; [ numinit ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/klee/klee-uclibc.nix b/nixpkgs/pkgs/applications/science/logic/klee/klee-uclibc.nix new file mode 100644 index 000000000000..91086ae84627 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/klee/klee-uclibc.nix @@ -0,0 +1,101 @@ +{ lib +, stdenv +, fetchurl +, fetchFromGitHub +, which +, linuxHeaders +, clang +, llvm +, python3 +, curl +, debugRuntime ? true +, runtimeAsserts ? false +, extraKleeuClibcConfig ? {} +}: + +let + localeSrcBase = "uClibc-locale-030818.tgz"; + localeSrc = fetchurl { + url = "http://www.uclibc.org/downloads/${localeSrcBase}"; + sha256 = "xDYr4xijjxjZjcz0YtItlbq5LwVUi7k/ZSmP6a+uvVc="; + }; + resolvedExtraKleeuClibcConfig = lib.mapAttrsToList (name: value: "${name}=${value}") (extraKleeuClibcConfig // { + "UCLIBC_DOWNLOAD_PREGENERATED_LOCALE_DATA" = "n"; + "RUNTIME_PREFIX" = "/"; + "DEVEL_PREFIX" = "/"; + }); +in stdenv.mkDerivation rec { + pname = "klee-uclibc"; + version = "1.3"; + src = fetchFromGitHub { + owner = "klee"; + repo = "klee-uclibc"; + rev = "klee_uclibc_v${version}"; + sha256 = "sha256-xQ8GWa0Gmd3lbwKodJhrsZeuR4j7NT4zIUh+kNhVY/w="; + }; + + nativeBuildInputs = [ + clang + curl + llvm + python3 + which + ]; + + # Some uClibc sources depend on Linux headers. + UCLIBC_KERNEL_HEADERS = "${linuxHeaders}/include"; + + # HACK: needed for cross-compile. + # See https://www.mail-archive.com/klee-dev@imperial.ac.uk/msg03141.html + KLEE_CFLAGS = "-idirafter ${clang}/resource-root/include"; + + prePatch = '' + patchShebangs ./configure + patchShebangs ./extra + ''; + + # klee-uclibc configure does not support --prefix, so we override configurePhase entirely + configurePhase = '' + ./configure ${lib.escapeShellArgs ( + ["--make-llvm-lib"] + ++ lib.optional (!debugRuntime) "--enable-release" + ++ lib.optional runtimeAsserts "--enable-assertions" + )} + + # Set all the configs we care about. + configs=( + PREFIX=$out + ) + for value in ${lib.escapeShellArgs resolvedExtraKleeuClibcConfig}; do + configs+=("$value") + done + + for configFile in .config .config.cmd; do + for config in "''${configs[@]}"; do + prefix="''${config%%=*}=" + if grep -q "$prefix" "$configFile"; then + sed -i "s"'\001'"''${prefix}"'\001'"#''${prefix}"'\001'"g" "$configFile" + fi + echo "$config" >> "$configFile" + done + done + ''; + + # Link the locale source into the correct place + preBuild = '' + ln -sf ${localeSrc} extra/locale/${localeSrcBase} + ''; + + makeFlags = ["HAVE_DOT_CONFIG=y"]; + + meta = with lib; { + description = "A modified version of uClibc for KLEE."; + longDescription = '' + klee-uclibc is a bitcode build of uClibc meant for compatibility with the + KLEE symbolic virtual machine. + ''; + homepage = "https://klee.github.io/"; + license = licenses.lgpl3; + maintainers = with maintainers; [ numinit ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/lci/default.nix b/nixpkgs/pkgs/applications/science/logic/lci/default.nix new file mode 100644 index 000000000000..593b2c54c5cf --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/lci/default.nix @@ -0,0 +1,16 @@ +{lib, stdenv, fetchurl, readline}: +stdenv.mkDerivation rec { + version = "0.6"; + pname = "lci"; + src = fetchurl { + url = "mirror://sourceforge/lci/${pname}-${version}.tar.gz"; + sha256="204f1ca5e2f56247d71ab320246811c220ed511bf08c9cb7f305cf180a93948e"; + }; + buildInputs = [readline]; + meta = { + description = "Lambda calculus interpreter"; + maintainers = with lib.maintainers; [raskin]; + platforms = with lib.platforms; linux; + license = lib.licenses.gpl3; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/lean/default.nix b/nixpkgs/pkgs/applications/science/logic/lean/default.nix new file mode 100644 index 000000000000..f0bd2ba777db --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/lean/default.nix @@ -0,0 +1,59 @@ +{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, gmp, coreutils }: + +stdenv.mkDerivation rec { + pname = "lean"; + version = "3.51.0"; + + src = fetchFromGitHub { + owner = "leanprover-community"; + repo = "lean"; + # lean's version string contains the commit sha1 it was built + # from. this is then used to check whether an olean file should be + # rebuilt. don't use a tag as rev because this will get replaced into + # src/githash.h.in in preConfigure. + rev = "9fc1dee97a72a3e34d658aefb4b8a95ecd3d477c"; + hash = "sha256-Vcsph4dTNLafeaTtVwJS8tWoWCgcP6pxF0ssZDE/YfM="; + }; + + patches = [ + # Fix gcc-13 build failure + (fetchpatch { + name = "gcc-13.patch"; + url = "https://github.com/leanprover-community/lean/commit/21d264a66d53b0a910178ae7d9529cb5886a39b6.patch"; + hash = "sha256-hBm2QNFS1jdoR6LUQHLReKxMKv7kbkrkrTGJ43YnvfA="; + }) + ]; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ gmp ]; + + cmakeDir = "../src"; + + # Running the tests is required to build the *.olean files for the core + # library. + doCheck = true; + + preConfigure = assert builtins.stringLength src.rev == 40; '' + substituteInPlace src/githash.h.in \ + --subst-var-by GIT_SHA1 "${src.rev}" + substituteInPlace library/init/version.lean.in \ + --subst-var-by GIT_SHA1 "${src.rev}" + ''; + + postPatch = "patchShebangs ."; + + postInstall = lib.optionalString stdenv.isDarwin '' + substituteInPlace $out/bin/leanpkg \ + --replace "greadlink" "${coreutils}/bin/readlink" + ''; + + meta = with lib; { + description = "Automatic and interactive theorem prover"; + homepage = "https://leanprover.github.io/"; + changelog = "https://github.com/leanprover-community/lean/blob/v${version}/doc/changes.md"; + license = licenses.asl20; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice gebner ]; + }; +} + diff --git a/nixpkgs/pkgs/applications/science/logic/lean2/default.nix b/nixpkgs/pkgs/applications/science/logic/lean2/default.nix new file mode 100644 index 000000000000..e30b8af04735 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/lean2/default.nix @@ -0,0 +1,46 @@ +{ lib, stdenv, fetchpatch, fetchFromGitHub, cmake, gmp, mpfr, python3 +, jemalloc, ninja, makeWrapper }: + +stdenv.mkDerivation { + pname = "lean2"; + version = "2018-10-01"; + + src = fetchFromGitHub { + owner = "leanprover"; + repo = "lean2"; + rev = "8072fdf9a0b31abb9d43ab894d7a858639e20ed7"; + sha256 = "12bscgihdgvaq5xi0hqf5r4w386zxm3nkx1n150lv5smhg8ga3gg"; + }; + + patches = [ + # https://github.com/leanprover/lean2/pull/13 + (fetchpatch { + name = "lean2-fix-compilation-error.patch"; + url = "https://github.com/collares/lean2/commit/09b316ce75fd330b3b140d138bcdae2b0e909234.patch"; + sha256 = "060mvqn9y8lsn4l20q9rhamkymzsgh0r1vzkjw78gnj8kjw67jl5"; + }) + ]; + nativeBuildInputs = [ cmake makeWrapper ninja ]; + buildInputs = [ gmp mpfr python3 jemalloc ]; + + preConfigure = '' + patchShebangs bin/leantags + cd src + ''; + + cmakeFlags = [ "-GNinja" ]; + + postInstall = '' + wrapProgram $out/bin/linja --prefix PATH : $out/bin:${ninja}/bin + ''; + + meta = with lib; { + description = "Automatic and interactive theorem prover (version with HoTT support)"; + homepage = "http://leanprover.github.io"; + license = licenses.asl20; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice gebner ]; + broken = stdenv.isAarch64; + mainProgram = "lean"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/lean4/default.nix b/nixpkgs/pkgs/applications/science/logic/lean4/default.nix new file mode 100644 index 000000000000..d8e52a77326c --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/lean4/default.nix @@ -0,0 +1,73 @@ +{ lib +, stdenv +, cmake +, fetchFromGitHub +, git +, gmp +, perl +, testers +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "lean4"; + version = "4.6.0"; + + src = fetchFromGitHub { + owner = "leanprover"; + repo = "lean4"; + rev = "v${finalAttrs.version}"; + hash = "sha256-Anf6uaTFG/c94N7b7HgT5riyOL5xbHeeoYTrrOl2vDA="; + }; + + postPatch = '' + substituteInPlace src/CMakeLists.txt \ + --replace 'set(GIT_SHA1 "")' 'set(GIT_SHA1 "${finalAttrs.src.rev}")' + + # Remove tests that fails in sandbox. + # It expects `sourceRoot` to be a git repository. + rm -rf src/lake/examples/git/ + ''; + + preConfigure = '' + patchShebangs stage0/src/bin/ src/bin/ + ''; + + nativeBuildInputs = [ + cmake + ]; + + buildInputs = [ + gmp + ]; + + nativeCheckInputs = [ + git + perl + ]; + + cmakeFlags = [ + "-DUSE_GITHASH=OFF" + "-DINSTALL_LICENSE=OFF" + ]; + + # Work around https://github.com/NixOS/nixpkgs/issues/166205. + env = lib.optionalAttrs stdenv.cc.isClang { + NIX_LDFLAGS = "-l${stdenv.cc.libcxx.cxxabi.libName}"; + }; + + passthru.tests = { + version = testers.testVersion { + package = finalAttrs.finalPackage; + }; + }; + + meta = with lib; { + description = "Automatic and interactive theorem prover"; + homepage = "https://leanprover.github.io/"; + changelog = "https://github.com/leanprover/lean4/blob/${finalAttrs.src.rev}/RELEASES.md"; + license = licenses.asl20; + platforms = platforms.all; + maintainers = with maintainers; [ marsam ]; + mainProgram = "lean"; + }; +}) diff --git a/nixpkgs/pkgs/applications/science/logic/leo2/default.nix b/nixpkgs/pkgs/applications/science/logic/leo2/default.nix new file mode 100644 index 000000000000..a72444adbba0 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/leo2/default.nix @@ -0,0 +1,53 @@ +{ lib, stdenv, fetchurl, fetchpatch, makeWrapper, eprover, ocaml, camlp4, perl, zlib }: + +stdenv.mkDerivation rec { + pname = "leo2"; + version = "1.7.0"; + + src = fetchurl { + url = "https://page.mi.fu-berlin.de/cbenzmueller/leo/leo2_v${version}.tgz"; + sha256 = "sha256:1b2q7vsz6s9ighypsigqjm1mzjiq3xgnz5id5ssb4rh9zm190r82"; + }; + + strictDeps = true; + + nativeBuildInputs = [ makeWrapper eprover ocaml camlp4 perl ]; + buildInputs = [ zlib ]; + + patches = [ (fetchpatch { + url = "https://github.com/niklasso/minisat/commit/7eb6015313561a2586032574788fcb133eeaa19f.patch"; + stripLen = 1; + extraPrefix = "lib/"; + sha256 = "sha256:01ln7hi6nvvkqkhn9hciqizizz5qspvqffgksvgmzn9x7kdd9pnh"; + }) + ]; + + preConfigure = '' + cd src + patchShebangs configure + substituteInPlace Makefile.pre \ + --replace '+camlp4' "${camlp4}/lib/ocaml/${ocaml.version}/site-lib/camlp4" + ''; + + buildFlags = [ "opt" ]; + + env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-reserved-user-defined-literal"; + + preInstall = "mkdir -p $out/bin"; + + postInstall = '' + mkdir -p "$out/etc" + echo -e "e = ${eprover}/bin/eprover\\nepclextract = ${eprover}/bin/epclextract" > "$out/etc/leoatprc" + + wrapProgram $out/bin/leo \ + --add-flags "--atprc $out/etc/leoatprc" + ''; + + meta = with lib; { + description = "A high-performance typed higher order prover"; + maintainers = [ maintainers.raskin ]; + platforms = platforms.unix; + license = licenses.bsd3; + homepage = "http://www.leoprover.org/"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/leo3/binary.nix b/nixpkgs/pkgs/applications/science/logic/leo3/binary.nix new file mode 100644 index 000000000000..332b28db5fb6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/leo3/binary.nix @@ -0,0 +1,29 @@ +{lib, stdenv, fetchurl, openjdk, runtimeShell}: +stdenv.mkDerivation rec { + pname = "leo3"; + version = "1.2"; + + src = fetchurl { + url = "https://github.com/leoprover/Leo-III/releases/download/v${version}/leo3.jar"; + sha256 = "1lgwxbr1rnk72rnvc8raq5i1q71ckhn998pwd9xk6zf27wlzijk7"; + }; + + dontUnpack = true; + + installPhase = '' + mkdir -p "$out"/{bin,lib/java/leo3} + cp "${src}" "$out/lib/java/leo3/leo3.jar" + echo "#!${runtimeShell}" > "$out/bin/leo3" + echo "'${openjdk}/bin/java' -jar '$out/lib/java/leo3/leo3.jar' \"\$@\"" >> "$out/bin/leo3" + chmod a+x "$out/bin/leo3" + ''; + + meta = with lib; { + description = "An automated theorem prover for classical higher-order logic with choice"; + sourceProvenance = with sourceTypes; [ binaryBytecode ]; + license = licenses.bsd3; + maintainers = [maintainers.raskin]; + platforms = platforms.linux; + homepage = "https://page.mi.fu-berlin.de/lex/leo3/"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/lingeling/default.nix b/nixpkgs/pkgs/applications/science/logic/lingeling/default.nix new file mode 100644 index 000000000000..1abf38b49cf8 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/lingeling/default.nix @@ -0,0 +1,48 @@ +{ lib, stdenv, fetchFromGitHub +, aiger +}: + +stdenv.mkDerivation { + pname = "lingeling"; + # This is the version used in satcomp2020 + version = "pre1_708beb26"; + + src = fetchFromGitHub { + owner = "arminbiere"; + repo = "lingeling"; + rev = "708beb26a7d5b5d5e7abd88d6f552fb1946b07c1"; + sha256 = "1lb2g37nd8qq5hw5g6l691nx5095336yb2zlbaw43mg56hkj8357"; + }; + + configurePhase = '' + ./configure.sh + + # Rather than patch ./configure, just sneak in use of aiger here, since it + # doesn't handle real build products very well (it works on a build-time + # dir, not installed copy)... This is so we can build 'blimc' + substituteInPlace ./makefile \ + --replace 'targets: liblgl.a' 'targets: liblgl.a blimc' \ + --replace '$(AIGER)/aiger.o' '${aiger.lib}/lib/aiger.o' \ + --replace '$(AIGER)/aiger.h' '${aiger.dev}/include/aiger.h' \ + --replace '-I$(AIGER)' '-I${aiger.dev}/include' + ''; + + installPhase = '' + mkdir -p $out/bin $lib/lib $dev/include + + cp lglib.h $dev/include + cp liblgl.a $lib/lib + + cp lingeling plingeling treengeling ilingeling blimc $out/bin + ''; + + outputs = [ "out" "dev" "lib" ]; + + meta = with lib; { + description = "Fast SAT solver"; + homepage = "http://fmv.jku.at/lingeling/"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/logisim-evolution/default.nix b/nixpkgs/pkgs/applications/science/logic/logisim-evolution/default.nix new file mode 100644 index 000000000000..affbfc170b90 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/logisim-evolution/default.nix @@ -0,0 +1,50 @@ +{ lib, stdenv, fetchurl, jre, makeWrapper, copyDesktopItems, makeDesktopItem, unzip }: + +stdenv.mkDerivation rec { + pname = "logisim-evolution"; + version = "3.8.0"; + + src = fetchurl { + url = "https://github.com/logisim-evolution/logisim-evolution/releases/download/v${version}/logisim-evolution-${version}-all.jar"; + sha256 = "sha256-TFm+fa3CMp0OMhnKBc6cLIWGQbIG/OpOOCG7ea7wbCw="; + }; + + dontUnpack = true; + + nativeBuildInputs = [ makeWrapper copyDesktopItems unzip ]; + + desktopItems = [ + (makeDesktopItem { + name = pname; + desktopName = "Logisim-evolution"; + exec = "logisim-evolution"; + icon = "logisim-evolution"; + comment = meta.description; + categories = [ "Education" ]; + }) + ]; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin + makeWrapper ${jre}/bin/java $out/bin/logisim-evolution --add-flags "-jar $src" + + # Create icons + unzip $src "resources/logisim/img/*" + for size in 16 32 48 128 256; do + install -D "./resources/logisim/img/logisim-icon-$size.png" "$out/share/icons/hicolor/''${size}x''${size}/apps/logisim-evolution.png" + done + + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://github.com/logisim-evolution/logisim-evolution"; + description = "Digital logic designer and simulator"; + maintainers = with maintainers; [ emilytrau ]; + sourceProvenance = with sourceTypes; [ binaryBytecode ]; + license = licenses.gpl2Plus; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/logisim/default.nix b/nixpkgs/pkgs/applications/science/logic/logisim/default.nix new file mode 100644 index 000000000000..ea8a1416a77a --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/logisim/default.nix @@ -0,0 +1,51 @@ +{ lib, stdenv, fetchurl, jre, makeWrapper, copyDesktopItems, makeDesktopItem, unzip }: + +stdenv.mkDerivation rec { + pname = "logisim"; + version = "2.7.1"; + + src = fetchurl { + url = "mirror://sourceforge/project/circuit/${lib.versions.majorMinor version}.x/${version}/logisim-generic-${version}.jar"; + sha256 = "1hkvc9zc7qmvjbl9579p84hw3n8wl3275246xlzj136i5b0phain"; + }; + + dontUnpack = true; + + nativeBuildInputs = [ makeWrapper copyDesktopItems unzip ]; + + desktopItems = [ + (makeDesktopItem { + name = pname; + desktopName = "Logisim"; + exec = "logisim"; + icon = "logisim"; + comment = meta.description; + categories = [ "Education" ]; + }) + ]; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin + makeWrapper ${jre}/bin/java $out/bin/logisim --add-flags "-jar $src" + + # Create icons + unzip $src "resources/logisim/img/*" + for size in 16 20 24 48 64 128 + do + install -D "./resources/logisim/img/logisim-icon-$size.png" "$out/share/icons/hicolor/''${size}x''${size}/apps/logisim.png" + done + + runHook postInstall + ''; + + meta = with lib; { + homepage = "http://www.cburch.com/logisim/"; + description = "Educational tool for designing and simulating digital logic circuits"; + maintainers = with maintainers; [ emilytrau ]; + sourceProvenance = with sourceTypes; [ binaryBytecode ]; + license = licenses.gpl2Plus; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/ltl2ba/default.nix b/nixpkgs/pkgs/applications/science/logic/ltl2ba/default.nix new file mode 100644 index 000000000000..30c13c6036f9 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/ltl2ba/default.nix @@ -0,0 +1,31 @@ +{ fetchurl, lib, stdenv }: + +stdenv.mkDerivation rec { + pname = "ltl2ba"; + version = "1.3"; + + src = fetchurl { + url = "http://www.lsv.ens-cachan.fr/~gastin/ltl2ba/${pname}-${version}.tar.gz"; + sha256 = "1bz9gjpvby4mnvny0nmxgd81rim26mqlcnjlznnxxk99575pfa4i"; + }; + + hardeningDisable = [ "format" ]; + + preConfigure = '' + substituteInPlace Makefile \ + --replace "CC=gcc" "" + ''; + + installPhase = '' + mkdir -p $out/bin + mv ltl2ba $out/bin + ''; + + meta = { + description = "Fast translation from LTL formulae to Buchi automata"; + homepage = "http://www.lsv.ens-cachan.fr/~gastin/ltl2ba"; + license = lib.licenses.gpl2Plus; + platforms = lib.platforms.darwin ++ lib.platforms.linux; + maintainers = [ lib.maintainers.thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/mcrl2/default.nix b/nixpkgs/pkgs/applications/science/logic/mcrl2/default.nix new file mode 100644 index 000000000000..854c2c16f5ac --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/mcrl2/default.nix @@ -0,0 +1,31 @@ +{lib, stdenv, fetchurl, cmake, libGLU, libGL, qt5, boost}: + +stdenv.mkDerivation rec { + version = "202307"; + build_nr = "1"; + pname = "mcrl2"; + + src = fetchurl { + url = "https://www.mcrl2.org/download/release/mcrl2-${version}.${build_nr}.tar.gz"; + hash = "sha256-zCHCO8tGyOxqUc0x3t/N3dUh4eG7slemlgK/QZsA4JA="; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ libGLU libGL qt5.qtbase boost ]; + + dontWrapQtApps = true; + + meta = with lib; { + broken = stdenv.isDarwin; + description = "A toolset for model-checking concurrent systems and protocols"; + longDescription = '' + A formal specification language with an associated toolset, + that can be used for modelling, validation and verification of + concurrent systems and protocols + ''; + homepage = "https://www.mcrl2.org/"; + license = licenses.boost; + maintainers = with maintainers; [ moretea ]; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/mcy/default.nix b/nixpkgs/pkgs/applications/science/logic/mcy/default.nix new file mode 100644 index 000000000000..343b50dfd7ef --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/mcy/default.nix @@ -0,0 +1,51 @@ +{ lib, stdenv, fetchFromGitHub +, yosys, python3 +}: + +let + python = python3.withPackages (p: with p; [ flask ]); +in +stdenv.mkDerivation { + pname = "mcy"; + version = "2020.08.03"; + + src = fetchFromGitHub { + owner = "YosysHQ"; + repo = "mcy"; + rev = "62048e69df13f8e03670424626755ae8ef4c36ff"; + sha256 = "15xxgzx1zxzx5kshqyrxnfx33cz6cjzxcdcn6z98jhs9bwyvf96f"; + }; + + buildInputs = [ python ]; + patchPhase = '' + chmod +x scripts/create_mutated.sh + patchShebangs . + + substituteInPlace mcy.py \ + --replace yosys '${yosys}/bin/yosys' \ + --replace 'os.execvp("mcy-dash"' "os.execvp(\"$out/bin/mcy-dash\"" + substituteInPlace mcy-dash.py \ + --replace 'app.run(debug=True)' 'app.run(host="0.0.0.0",debug=True)' \ + --replace 'subprocess.Popen(["mcy"' "subprocess.Popen([\"$out/bin/mcy\"" + substituteInPlace scripts/create_mutated.sh \ + --replace yosys '${yosys}/bin/yosys' + ''; + + # the build needs a bit of work... + buildPhase = "true"; + installPhase = '' + mkdir -p $out/bin $out/share/mcy/{dash,scripts} + install mcy.py $out/bin/mcy && chmod +x $out/bin/mcy + install mcy-dash.py $out/bin/mcy-dash && chmod +x $out/bin/mcy-dash + cp -r dash/. $out/share/mcy/dash/. + cp -r scripts/. $out/share/mcy/scripts/. + ''; + + meta = { + description = "Mutation-based coverage testing for hardware designs, with Yosys"; + homepage = "https://github.com/YosysHQ/mcy"; + license = lib.licenses.isc; + maintainers = with lib.maintainers; [ thoughtpolice ]; + platforms = lib.platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/metis-prover/default.nix b/nixpkgs/pkgs/applications/science/logic/metis-prover/default.nix new file mode 100644 index 000000000000..5b17403dc7f4 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/metis-prover/default.nix @@ -0,0 +1,32 @@ +{ lib, stdenv, fetchFromGitHub, perl, mlton }: + +stdenv.mkDerivation { + pname = "metis-prover"; + version = "2.4.20200713"; + + src = fetchFromGitHub { + owner = "gilith"; + repo = "metis"; + rev = "d17c3a8cf6537212c5c4bfdadcf865bd25723132"; + sha256 = "phu1x0yahK/B2bSOCvlze7UJw8smX9zw6dJTpDD9chM="; + }; + + nativeBuildInputs = [ perl ]; + buildInputs = [ mlton ]; + + patchPhase = "patchShebangs ."; + + buildPhase = "make mlton"; + + installPhase = '' + install -Dm0755 bin/mlton/metis $out/bin/metis + ''; + + meta = with lib; { + description = "Automatic theorem prover for first-order logic with equality"; + homepage = "https://www.gilith.com/research/metis/"; + license = licenses.mit; + maintainers = with maintainers; [ gebner ]; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/minisat/default.nix b/nixpkgs/pkgs/applications/science/logic/minisat/default.nix new file mode 100644 index 000000000000..10d380882744 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/minisat/default.nix @@ -0,0 +1,24 @@ +{ lib, stdenv, fetchFromGitHub, cmake, zlib }: + +stdenv.mkDerivation rec { + pname = "minisat"; + version = "2.2.1"; + + src = fetchFromGitHub { + owner = "stp"; + repo = pname; + rev = "releases/${version}"; + sha256 = "14vcbjnlia00lpyv2fhbmw3wbc9bk9h7bln9zpyc3nwiz5cbjz4a"; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ zlib ]; + + meta = with lib; { + description = "Compact and readable SAT solver"; + maintainers = with maintainers; [ gebner raskin ]; + platforms = platforms.unix; + license = licenses.mit; + homepage = "http://minisat.se/"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/monosat/default.nix b/nixpkgs/pkgs/applications/science/logic/monosat/default.nix new file mode 100644 index 000000000000..5b894d2c9376 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/monosat/default.nix @@ -0,0 +1,99 @@ +{ lib, stdenv, fetchpatch, fetchFromGitHub, cmake, zlib, gmp, jdk8, + # The JDK we use on Darwin currently makes extensive use of rpaths which are + # annoying and break the python library, so let's not bother for now + includeJava ? !stdenv.hostPlatform.isDarwin, includeGplCode ? true }: + +with lib; + +let + boolToCmake = x: if x then "ON" else "OFF"; + + rev = "1.8.0"; + sha256 = "0q3a8x3iih25xkp2bm842sm2hxlb8hxlls4qmvj7vzwrh4lvsl7b"; + + pname = "monosat"; + version = rev; + + src = fetchFromGitHub { + owner = "sambayless"; + repo = pname; + inherit rev sha256; + }; + + patches = [ + # Python 3.8 compatibility + (fetchpatch { + url = "https://github.com/sambayless/monosat/commit/a5079711d0df0451f9840f3a41248e56dbb03967.patch"; + sha256 = "1p2y0jw8hb9c90nbffhn86k1dxd6f6hk5v70dfmpzka3y6g1ksal"; + }) + ]; + + # source behind __linux__ check assumes system is also x86 and + # tries to disable x86/x87-specific extended precision mode + # https://github.com/sambayless/monosat/issues/33 + commonPostPatch = lib.optionalString (!stdenv.hostPlatform.isx86) '' + substituteInPlace src/monosat/Main.cc \ + --replace 'defined(__linux__)' '0' + ''; + + core = stdenv.mkDerivation { + name = "${pname}-${version}"; + inherit src patches; + postPatch = commonPostPatch; + nativeBuildInputs = [ cmake ]; + buildInputs = [ zlib gmp jdk8 ]; + + cmakeFlags = [ + "-DBUILD_STATIC=OFF" + "-DJAVA=${boolToCmake includeJava}" + "-DGPL=${boolToCmake includeGplCode}" + + # file RPATH_CHANGE could not write new RPATH + "-DCMAKE_SKIP_BUILD_RPATH=ON" + ]; + + postInstall = optionalString includeJava '' + mkdir -p $out/share/java + cp monosat.jar $out/share/java + ''; + + passthru = { inherit python; }; + + meta = { + description = "SMT solver for Monotonic Theories"; + platforms = platforms.unix; + license = if includeGplCode then licenses.gpl2 else licenses.mit; + homepage = "https://github.com/sambayless/monosat"; + maintainers = [ maintainers.acairncross ]; + }; + }; + + python = { buildPythonPackage, cython, pytestCheckHook }: buildPythonPackage { + inherit pname version src patches; + + propagatedBuildInputs = [ core cython ]; + + # This tells setup.py to use cython, which should produce faster bindings + MONOSAT_CYTHON = true; + + # After patching src, move to where the actually relevant source is. This could just be made + # the sourceRoot if it weren't for the patch. + postPatch = commonPostPatch + '' + cd src/monosat/api/python + '' + + # The relative paths here don't make sense for our Nix build + # TODO: do we want to just reference the core monosat library rather than copying the + # shared lib? The current setup.py copies the .dylib/.so... + '' + substituteInPlace setup.py \ + --replace 'library_dir = "../../../../"' 'library_dir = "${core}/lib/"' + ''; + + nativeCheckInputs = [ pytestCheckHook ]; + + disabledTests = [ + "test_assertAtMostOne" + "test_assertEqual" + ]; + }; +in core diff --git a/nixpkgs/pkgs/applications/science/logic/msat/default.nix b/nixpkgs/pkgs/applications/science/logic/msat/default.nix new file mode 100644 index 000000000000..dc2b1a221199 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/msat/default.nix @@ -0,0 +1,13 @@ +{ lib, ocamlPackages }: + +with ocamlPackages; buildDunePackage { + pname = "msat-bin"; + + inherit (msat) version src; + + buildInputs = [ camlzip containers msat ]; + + meta = msat.meta // { + description = "SAT solver binary based on the msat library"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/naproche/default.nix b/nixpkgs/pkgs/applications/science/logic/naproche/default.nix new file mode 100644 index 000000000000..f6743745a7b6 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/naproche/default.nix @@ -0,0 +1,38 @@ +{ lib, fetchFromGitHub, haskellPackages, makeWrapper, eprover }: + +with haskellPackages; mkDerivation { + pname = "Naproche-SAD"; + version = "unstable-2023-07-11"; + + src = fetchFromGitHub { + owner = "naproche"; + repo = "naproche"; + rev = "4c399d49a86987369bec6e1ac5ae3739cd6db0a8"; + sha256 = "sha256-Ji6yxbDEcwuYAzIZwK5sHNltK1WBFBfpyoEtoID/U4k="; + }; + + isExecutable = true; + + buildTools = [ hpack makeWrapper ]; + executableHaskellDepends = [ + base array bytestring containers ghc-prim megaparsec mtl network process + split temporary text threads time transformers uuid + ]; + + prePatch = "hpack"; + + checkPhase = '' + export NAPROCHE_EPROVER=${eprover}/bin/eprover + dist/build/Naproche-SAD/Naproche-SAD examples/cantor.ftl.tex -t 60 --tex=on + ''; + + postInstall = '' + wrapProgram $out/bin/Naproche-SAD \ + --set-default NAPROCHE_EPROVER ${eprover}/bin/eprover + ''; + + homepage = "https://github.com/naproche/naproche#readme"; + description = "Write formal proofs in natural language and LaTeX"; + maintainers = with lib.maintainers; [ jvanbruegge ]; + license = lib.licenses.gpl3Only; +} diff --git a/nixpkgs/pkgs/applications/science/logic/netlistsvg/default.nix b/nixpkgs/pkgs/applications/science/logic/netlistsvg/default.nix new file mode 100644 index 000000000000..8458d63f03bb --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/netlistsvg/default.nix @@ -0,0 +1,54 @@ +{ lib +, buildNpmPackage +, fetchFromGitHub +, runCommandLocal +, netlistsvg +, yosys +}: + +buildNpmPackage rec { + pname = "netlistsvg"; + version = "1.0.2"; + + src = fetchFromGitHub { + owner = "nturley"; + repo = "netlistsvg"; + rev = "refs/tags/v${version}"; + hash = "sha256-H37zhjfv7c/TV+pAk70eDiE6ZQ9JjZq1TFvac6OOKBk="; + }; + + postPatch = '' + cp ${./package-lock.json} ./package-lock.json + ''; + + npmDepsHash = "sha256-nKxskNW8YFDloA9Nxs/Rfjew8nX+l9xKB8/8313KoYo="; + + dontNpmBuild = true; + + doCheck = true; + + checkPhase = '' + runHook preCheck + + node --trace-warnings test/test-all.js + + runHook postCheck + ''; + + # An integration test: Synthesize a circuit from hdl and generate a diagram + passthru.tests.netlistsvg-yosys-integration-test = runCommandLocal "netlistsvg-yosys-integration-test" { + nativeBuildInputs = [ netlistsvg yosys ]; + } '' + yosys -p "prep -top helloworld -flatten; aigmap; write_json circuit.json" ${./test.v} + netlistsvg circuit.json -o circuit.svg + test -s circuit.svg + touch $out + ''; + + meta = { + description = "Draw SVG digital circuits schematics from yosys JSON netlists"; + homepage = "https://github.com/nturley/netlistsvg"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ pbsds ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/netlistsvg/package-lock.json 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a/nixpkgs/pkgs/applications/science/logic/netlistsvg/test.v b/nixpkgs/pkgs/applications/science/logic/netlistsvg/test.v new file mode 100644 index 000000000000..940543ae0e67 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/netlistsvg/test.v @@ -0,0 +1,7 @@ +module helloworld ( + input wire[7:0] a, + input wire[7:0] b, + output wire[7:0] c, +); + assign c = a + b; +endmodule diff --git a/nixpkgs/pkgs/applications/science/logic/nuXmv/default.nix b/nixpkgs/pkgs/applications/science/logic/nuXmv/default.nix new file mode 100644 index 000000000000..ad40902e9280 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/nuXmv/default.nix @@ -0,0 +1,34 @@ +{ lib, stdenv, fetchurl, gmp, makeWrapper }: + +stdenv.mkDerivation rec { + pname = "nuXmv"; + version = "2.0.0"; + + src = fetchurl { + url = "https://es-static.fbk.eu/tools/nuxmv/downloads/nuXmv-${version}-${if stdenv.isDarwin then "macosx64" else "linux64"}.tar.gz"; + sha256 = if stdenv.isDarwin + then "sha256-48I+FhJUUam1nMCMMM47CwGO82BYsNz0eHDHXBfqO2E=" + else "sha256-Gf+QgAjTrysZj7qTtt1wcQPganDtO0YtRY4ykhLPzVo="; + }; + + nativeBuildInputs = [ makeWrapper ]; + buildInputs = lib.optionals stdenv.isDarwin [ gmp ]; + installPhase= '' + runHook preInstall + install -Dm755 -t $out/bin ./bin/nuXmv + runHook postInstall + ''; + + postFixup = lib.optionalString stdenv.isDarwin '' + wrapProgram $out/bin/nuXmv --prefix DYLD_LIBRARY_PATH : ${gmp}/lib + ''; + + meta = with lib; { + description = "Symbolic model checker for analysis of finite and infinite state systems"; + homepage = "https://nuxmv.fbk.eu/pmwiki.php"; + sourceProvenance = with sourceTypes; [ binaryNativeCode ]; + license = licenses.unfree; + maintainers = with maintainers; [ siraben ]; + platforms = [ "x86_64-linux" "x86_64-darwin" ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/nusmv/default.nix b/nixpkgs/pkgs/applications/science/logic/nusmv/default.nix new file mode 100644 index 000000000000..d3e3dc998cc0 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/nusmv/default.nix @@ -0,0 +1,37 @@ +{ stdenv +, lib +, fetchurl +, autoPatchelfHook +}: + +stdenv.mkDerivation rec { + pname = "NuSMV"; + version = "2.6.0"; + + src = with stdenv; fetchurl ( + if isx86_64 && isLinux then { + url = "https://nusmv.fbk.eu/distrib/NuSMV-${version}-linux64.tar.gz"; + sha256 = "1370x2vwjndv9ham5q399nn84hvhm1gj1k7pq576qmh4pi12xc8i"; + } else if isx86_32 && isLinux then { + url = "https://nusmv.fbk.eu/distrib/NuSMV-${version}-linux32.tar.gz"; + sha256 = "1qf41czwbqxlrmv0rv2daxgz2hljza5xks85sx3dhwpjy2iav9jb"; + } else throw "only linux x86_64 and x86_32 are currently supported") ; + + + nativeBuildInputs = [ autoPatchelfHook ]; + + installPhase = '' + install -m755 -D bin/NuSMV $out/bin/NuSMV + install -m755 -D bin/ltl2smv $out/bin/ltl2smv + cp -r include $out/include + cp -r share $out/share + ''; + + meta = with lib; { + description = "A new symbolic model checker for the analysis of synchronous finite-state and infinite-state systems"; + homepage = "https://nuxmv.fbk.eu/pmwiki.php"; + maintainers = with maintainers; [ mgttlinger ]; + sourceProvenance = with sourceTypes; [ binaryNativeCode ]; + platforms = platforms.linux; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/open-wbo/default.nix b/nixpkgs/pkgs/applications/science/logic/open-wbo/default.nix new file mode 100644 index 000000000000..3677eb39de6a --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/open-wbo/default.nix @@ -0,0 +1,29 @@ +{ lib, stdenv, fetchFromGitHub, zlib, gmp }: + +stdenv.mkDerivation { + pname = "open-wbo"; + version = "2.0"; + + src = fetchFromGitHub { + owner = "sat-group"; + repo = "open-wbo"; + rev = "f193a3bd802551b13d6424bc1baba6ad35ec6ba6"; + sha256 = "1742i15qfsbf49c4r837wz35c1p7yafvz7ar6vmgcj6cmfwr8jb4"; + }; + + buildInputs = [ zlib gmp ]; + + makeFlags = [ "r" ]; + installPhase = '' + install -Dm0755 open-wbo_release $out/bin/open-wbo + ''; + + meta = with lib; { + broken = (stdenv.isLinux && stdenv.isAarch64); + description = "State-of-the-art MaxSAT and Pseudo-Boolean solver"; + maintainers = with maintainers; [ gebner ]; + platforms = platforms.unix; + license = licenses.mit; + homepage = "http://sat.inesc-id.pt/open-wbo/"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/opensmt/default.nix b/nixpkgs/pkgs/applications/science/logic/opensmt/default.nix new file mode 100644 index 000000000000..5ae032ea3097 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/opensmt/default.nix @@ -0,0 +1,39 @@ +{ stdenv, lib, fetchFromGitHub +, cmake, libedit, gmpxx, bison, flex +, enableReadline ? false, readline +, gtest +}: + +stdenv.mkDerivation rec { + pname = "opensmt"; + version = "2.5.2"; + + src = fetchFromGitHub { + owner = "usi-verification-and-security"; + repo = "opensmt"; + rev = "v${version}"; + sha256 = "sha256-gP2oaTEBVk54oK4Le5VudF7+HM8JXCzVqv8UXc08RFQ="; + }; + + nativeBuildInputs = [ cmake bison flex ]; + buildInputs = [ libedit gmpxx ] + ++ lib.optional enableReadline readline; + + preConfigure = '' + substituteInPlace test/CMakeLists.txt \ + --replace 'FetchContent_Populate' '#FetchContent_Populate' + ''; + cmakeFlags = [ + "-Dgoogletest_SOURCE_DIR=${gtest.src}" + "-Dgoogletest_BINARY_DIR=./gtest-build" + ]; + + meta = with lib; { + broken = (stdenv.isLinux && stdenv.isAarch64); + description = "A satisfiability modulo theory (SMT) solver"; + maintainers = [ maintainers.raskin ]; + platforms = platforms.linux; + license = if enableReadline then licenses.gpl2Plus else licenses.mit; + homepage = "https://github.com/usi-verification-and-security/opensmt"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/ott/default.nix b/nixpkgs/pkgs/applications/science/logic/ott/default.nix new file mode 100644 index 000000000000..a00c565fb4e0 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/ott/default.nix @@ -0,0 +1,48 @@ +{ lib, stdenv, fetchFromGitHub, pkg-config, ocamlPackages, opaline }: + +stdenv.mkDerivation rec { + pname = "ott"; + version = "0.33"; + + src = fetchFromGitHub { + owner = "ott-lang"; + repo = "ott"; + rev = version; + hash = "sha256-GzeEiok5kigcmfqf/K/UxvlKkl55zy0vOyiRZ2HyMiE="; + }; + + + strictDeps = true; + + nativeBuildInputs = [ pkg-config opaline ] ++ (with ocamlPackages; [ findlib ocaml ]); + buildInputs = with ocamlPackages; [ ocamlgraph ]; + + installTargets = "ott.install"; + + postInstall = '' + opaline -prefix $out + '' + # There is `emacsPackages.ott-mode` for this now. + + '' + rm -r $out/share/emacs + ''; + + meta = { + description = "A tool for the working semanticist"; + longDescription = '' + Ott is a tool for writing definitions of programming languages and + calculi. It takes as input a definition of a language syntax and + semantics, in a concise and readable ASCII notation that is close to + what one would write in informal mathematics. It generates LaTeX to + build a typeset version of the definition, and Coq, HOL, and Isabelle + versions of the definition. Additionally, it can be run as a filter, + taking a LaTeX/Coq/Isabelle/HOL source file with embedded (symbolic) + terms of the defined language, parsing them and replacing them by + target-system terms. + ''; + homepage = "http://www.cl.cam.ac.uk/~pes20/ott"; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ jwiegley ]; + platforms = lib.platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/petrinizer/default.nix b/nixpkgs/pkgs/applications/science/logic/petrinizer/default.nix new file mode 100644 index 000000000000..9fd20e3ed4af --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/petrinizer/default.nix @@ -0,0 +1,31 @@ +{ mkDerivation +, async, base, bytestring, containers, fetchFromGitLab, mtl +, parallel-io, parsec, lib, stm, transformers, sbv_7_13}: + +mkDerivation rec { + pname = "petrinizer"; + version = "0.9.1.1"; + + src = fetchFromGitLab { + domain = "gitlab.lrz.de"; + owner = "i7"; + repo = pname; + rev = version; + sha256 = "1n7fzm96gq5rxm2f8w8sr1yzm1zcxpf0b473c6xnhsgqsis5j4xw"; + }; + + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + async base bytestring containers mtl parallel-io parsec sbv_7_13 stm + transformers + ]; + description = "Safety and Liveness Analysis of Petri Nets with SMT solvers"; + license = lib.licenses.gpl3; + maintainers = with lib.maintainers; [ raskin ]; + inherit (sbv_7_13.meta) platforms; + + # dependency sbv no longer builds + hydraPlatforms = lib.platforms.none; + broken = true; +} diff --git a/nixpkgs/pkgs/applications/science/logic/picosat/default.nix b/nixpkgs/pkgs/applications/science/logic/picosat/default.nix new file mode 100644 index 000000000000..1fef05069a69 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/picosat/default.nix @@ -0,0 +1,44 @@ +{ lib, stdenv, fetchurl }: + +stdenv.mkDerivation rec { + pname = "picosat"; + version = "965"; + + src = fetchurl { + url = "https://fmv.jku.at/picosat/${pname}-${version}.tar.gz"; + sha256 = "0m578rpa5rdn08d10kr4lbsdwp4402hpavrz6n7n53xs517rn5hm"; + }; + + prePatch = '' + substituteInPlace picosat.c --replace "sys/unistd.h" "unistd.h" + + substituteInPlace makefile.in \ + --replace 'ar rc' '$(AR) rc' \ + --replace 'ranlib' '$(RANLIB)' + ''; + + configurePhase = "./configure.sh --shared --trace"; + + makeFlags = lib.optional stdenv.isDarwin + "SONAME=-Wl,-install_name,$(out)/lib/libpicosat.so"; + + installPhase = '' + mkdir -p $out/bin $out/lib $out/share $out/include/picosat + cp picomus picomcs picosat picogcnf "$out"/bin + + cp VERSION "$out"/share/picosat.version + cp picosat.o "$out"/lib + cp libpicosat.a "$out"/lib + cp libpicosat.so "$out"/lib + + cp picosat.h "$out"/include/picosat + ''; + + meta = { + description = "SAT solver with proof and core support"; + homepage = "https://fmv.jku.at/picosat/"; + license = lib.licenses.mit; + platforms = lib.platforms.unix; + maintainers = with lib.maintainers; [ roconnor thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/poly/default.nix b/nixpkgs/pkgs/applications/science/logic/poly/default.nix new file mode 100644 index 000000000000..e54f822921ca --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/poly/default.nix @@ -0,0 +1,27 @@ +{lib, stdenv, fetchFromGitHub, gmp, cmake, python3}: + +stdenv.mkDerivation rec { + pname = "libpoly"; + version = "0.1.13"; + + src = fetchFromGitHub { + owner = "SRI-CSL"; + repo = "libpoly"; + # they've pushed to the release branch, use explicit tag + rev = "refs/tags/v${version}"; + sha256 = "sha256-7aFz+6XJOVEA/Fmi0ywd6rZdTW8sHq8MoHqXR0Hc2o4="; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ gmp python3 ]; + + strictDeps = true; + + meta = with lib; { + homepage = "https://github.com/SRI-CSL/libpoly"; + description = "C library for manipulating polynomials"; + license = licenses.lgpl3; + platforms = platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/potassco/clingcon.nix b/nixpkgs/pkgs/applications/science/logic/potassco/clingcon.nix new file mode 100644 index 000000000000..e024ffb9364e --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/potassco/clingcon.nix @@ -0,0 +1,41 @@ +{ lib, stdenv +, fetchFromGitHub +, cmake +, clingo +, catch2 +}: + +stdenv.mkDerivation rec { + pname = "clingcon"; + version = "5.2.0"; + + src = fetchFromGitHub { + owner = "potassco"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-wZfTneoQSqEnLAVE8WyPh9EABmOEhDgRm6yWAF1T7Nk="; + }; + + postPatch = '' + cp ${catch2}/include/catch2/catch.hpp libclingcon/tests/catch.hpp + ''; + + nativeBuildInputs = [ cmake clingo ]; + + cmakeFlags = [ + "-DCLINGCON_MANAGE_RPATH=ON" + "-DPYCLINGCON_ENABLE=OFF" + "-DCLINGCON_BUILD_TESTS=ON" + ]; + + doCheck = true; + + meta = { + description = "Extension of clingo to handle constraints over integers"; + license = lib.licenses.mit; + platforms = lib.platforms.unix; + homepage = "https://potassco.org/"; + downloadPage = "https://github.com/potassco/clingcon/releases/"; + changelog = "https://github.com/potassco/clingcon/releases/tag/v${version}"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/potassco/clingo.nix b/nixpkgs/pkgs/applications/science/logic/potassco/clingo.nix new file mode 100644 index 000000000000..ad3af12429a2 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/potassco/clingo.nix @@ -0,0 +1,26 @@ +{ lib, stdenv, fetchFromGitHub, cmake }: + +stdenv.mkDerivation rec { + pname = "clingo"; + version = "5.7.1"; + + src = fetchFromGitHub { + owner = "potassco"; + repo = "clingo"; + rev = "v${version}"; + sha256 = "sha256-S0JAfMwg49aryKABbC/2oLCEkndVpMVcFE6X0vkbtNc="; + }; + + nativeBuildInputs = [ cmake ]; + + cmakeFlags = [ "-DCLINGO_BUILD_WITH_PYTHON=OFF" ]; + + meta = { + description = "ASP system to ground and solve logic programs"; + license = lib.licenses.mit; + maintainers = [lib.maintainers.raskin]; + platforms = lib.platforms.unix; + homepage = "https://potassco.org/"; + downloadPage = "https://github.com/potassco/clingo/releases/"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/prooftree/default.nix b/nixpkgs/pkgs/applications/science/logic/prooftree/default.nix new file mode 100644 index 000000000000..4e65c018d1a2 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/prooftree/default.nix @@ -0,0 +1,44 @@ +{ lib, stdenv, fetchurl, pkg-config, ncurses, ocamlPackages }: + +stdenv.mkDerivation rec { + pname = "prooftree"; + version = "0.13"; + + src = fetchurl { + url = "https://askra.de/software/prooftree/releases/prooftree-${version}.tar.gz"; + sha256 = "0z1z4wqbqwgppkh2bm89fgy07a0y2m6g4lvcyzs09sm1ysklk2dh"; + }; + + strictDeps = true; + + nativeBuildInputs = [ pkg-config ] ++ (with ocamlPackages; [ ocaml findlib camlp5 ]); + buildInputs = [ ncurses ] ++ (with ocamlPackages; [ lablgtk ]); + + dontAddPrefix = true; + configureFlags = [ "--prefix" "$(out)" ]; + + meta = with lib; { + description = "A program for proof-tree visualization"; + longDescription = '' + Prooftree is a program for proof-tree visualization during interactive + proof development in a theorem prover. It is currently being developed + for Coq and Proof General. Prooftree helps against getting lost between + different subgoals in interactive proof development. It clearly shows + where the current subgoal comes from and thus helps in developing the + right plan for solving it. + + Prooftree uses different colors for the already proven subgoals, the + current branch in the proof and the still open subgoals. Sequent texts + are not displayed in the proof tree itself, but they are shown as a + tool-tip when the mouse rests over a sequent symbol. Long proof commands + are abbreviated in the tree display, but show up in full length as + tool-tip. Both, sequents and proof commands, can be shown in the display + below the tree (on single click) or in a separate window (on double or + shift-click). + ''; + homepage = "http://askra.de/software/prooftree"; + platforms = platforms.unix; + maintainers = [ maintainers.jwiegley ]; + license = licenses.gpl3; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/prover9/default.nix b/nixpkgs/pkgs/applications/science/logic/prover9/default.nix new file mode 100644 index 000000000000..5c476be06e4e --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/prover9/default.nix @@ -0,0 +1,46 @@ +{ lib, stdenv, fetchurl }: + +stdenv.mkDerivation { + pname = "prover9"; + version = "2009-11a"; + + src = fetchurl { + url = "https://www.cs.unm.edu/~mccune/mace4/download/LADR-2009-11A.tar.gz"; + sha256 = "1l2i3d3h5z7nnbzilb6z92r0rbx0kh6yaxn2c5qhn3000xcfsay3"; + }; + + hardeningDisable = [ "format" ]; + + postPatch = '' + RM=$(type -tp rm) + MV=$(type -tp mv) + CP=$(type -tp cp) + for f in Makefile */Makefile; do + substituteInPlace $f --replace "/bin/rm" "$RM" \ + --replace "/bin/mv" "$MV" \ + --replace "/bin/cp" "$CP"; + done + ''; + + buildFlags = [ "all" ]; + + checkPhase = "make test1"; + + installPhase = '' + mkdir -p $out/bin + cp bin/* $out/bin + ''; + + meta = with lib; { + homepage = "https://www.cs.unm.edu/~mccune/mace4/"; + license = licenses.gpl2Only; + description = "Automated theorem prover for first-order and equational logic"; + longDescription = '' + Prover9 is a resolution/paramodulation automated theorem prover + for first-order and equational logic. Prover9 is a successor of + the Otter Prover. This is the LADR command-line version. + ''; + platforms = platforms.linux; + maintainers = with maintainers; [ ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/proverif/default.nix b/nixpkgs/pkgs/applications/science/logic/proverif/default.nix new file mode 100644 index 000000000000..5cd0e5ff9e39 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/proverif/default.nix @@ -0,0 +1,31 @@ +{ lib, stdenv, fetchurl, ocamlPackages }: + +stdenv.mkDerivation rec { + pname = "proverif"; + version = "2.05"; + + src = fetchurl { + url = "https://bblanche.gitlabpages.inria.fr/proverif/proverif${version}.tar.gz"; + hash = "sha256-SHH1PDKrSgRmmgYMSIa6XZCASWlj+5gKmmLSxCnOq8Q="; + }; + + strictDeps = true; + + nativeBuildInputs = with ocamlPackages; [ ocaml findlib ]; + + buildPhase = "./build -nointeract"; + installPhase = '' + runHook preInstall + install -D -t $out/bin proverif proveriftotex + install -D -t $out/share/emacs/site-lisp/ emacs/proverif.el + runHook postInstall + ''; + + meta = { + description = "Cryptographic protocol verifier in the formal model"; + homepage = "https://bblanche.gitlabpages.inria.fr/proverif/"; + license = lib.licenses.gpl2; + platforms = lib.platforms.unix; + maintainers = with lib.maintainers; [ thoughtpolice vbgl ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/redprl/default.nix b/nixpkgs/pkgs/applications/science/logic/redprl/default.nix new file mode 100644 index 000000000000..656f3f1b653e --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/redprl/default.nix @@ -0,0 +1,37 @@ +{ lib, stdenv, fetchFromGitHub, mlton }: + +stdenv.mkDerivation { + pname = "redprl"; + version = "unstable-2019-11-04"; + + src = fetchFromGitHub { + owner = "RedPRL"; + repo = "sml-redprl"; + rev = "c72190de76f7ed1cfbe1d2046c96e99ac5022b0c"; + fetchSubmodules = true; + sha256 = "sha256-xrQT5o0bsIN+mCYUOz9iY4+j3HGROb1I6R2ADcLy8n4="; + }; + + buildInputs = [ mlton ]; + + postPatch = '' + patchShebangs ./script/ + ''; + + buildPhase = '' + ./script/mlton.sh + ''; + + installPhase = '' + mkdir -p $out/bin + mv ./bin/redprl $out/bin + ''; + + meta = with lib; { + description = "A proof assistant for Nominal Computational Type Theory"; + homepage = "http://www.redprl.org/"; + license = licenses.mit; + maintainers = with maintainers; [ acowley ]; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/satallax/default.nix b/nixpkgs/pkgs/applications/science/logic/satallax/default.nix new file mode 100644 index 000000000000..af11cd0d6d8f --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/satallax/default.nix @@ -0,0 +1,89 @@ +{ lib, stdenv, fetchurl, ocaml, zlib, which, eprover, makeWrapper, coq }: +stdenv.mkDerivation rec { + pname = "satallax"; + version = "2.7"; + + strictDeps = true; + + nativeBuildInputs = [ makeWrapper ocaml which eprover coq ]; + buildInputs = [ zlib ]; + + src = fetchurl { + url = "https://www.ps.uni-saarland.de/~cebrown/satallax/downloads/${pname}-${version}.tar.gz"; + sha256 = "1kvxn8mc35igk4vigi5cp7w3wpxk2z3bgwllfm4n3h2jfs0vkpib"; + }; + + patches = [ + # GCC9 doesn't allow default value in friend declaration. + ./fix-declaration-gcc9.patch + ]; + + prePatch = '' + patch -p1 -i ${../avy/minisat-fenv.patch} -d minisat + ''; + + preConfigure = '' + mkdir fake-tools + echo "echo 'Nix-build-host.localdomain'" > fake-tools/hostname + chmod a+x fake-tools/hostname + export PATH="$PATH:$PWD/fake-tools" + + ( + cd picosat-* + ./configure + make + ) + export PATH="$PATH:$PWD/libexec/satallax" + + mkdir -p "$out/libexec/satallax" + cp picosat-*/picosat picosat-*/picomus "$out/libexec/satallax" + + ( + cd minisat + export MROOT=$PWD + cd core + make + cd ../simp + make + ) + ''; + + # error: invalid suffix on literal; C++11 requires a space between literal and identifier + env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-Wno-reserved-user-defined-literal"; + + installPhase = '' + mkdir -p "$out/share/doc/satallax" "$out/bin" "$out/lib" "$out/lib/satallax" + cp bin/satallax.opt "$out/bin/satallax" + wrapProgram "$out/bin/satallax" \ + --suffix PATH : "${lib.makeBinPath [ coq eprover ]}:$out/libexec/satallax" \ + --add-flags "-M" --add-flags "$out/lib/satallax/modes" + + cp LICENSE README "$out/share/doc/satallax" + + cp bin/*.so "$out/lib" + + cp -r modes "$out/lib/satallax/" + cp -r problems "$out/lib/satallax/" + cp -r coq* "$out/lib/satallax/" + ''; + + doCheck = stdenv.isLinux; + + checkPhase = '' + runHook preCheck + if bash ./test | grep ERROR; then + echo "Tests failed" + exit 1 + fi + runHook postCheck + ''; + + meta = { + description = "Automated theorem prover for higher-order logic"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.raskin ]; + platforms = lib.platforms.unix; + downloadPage = "http://www.ps.uni-saarland.de/~cebrown/satallax/downloads.php"; + homepage = "http://www.ps.uni-saarland.de/~cebrown/satallax/index.php"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/satallax/fix-declaration-gcc9.patch b/nixpkgs/pkgs/applications/science/logic/satallax/fix-declaration-gcc9.patch new file mode 100644 index 000000000000..1933fc25c4da --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/satallax/fix-declaration-gcc9.patch @@ -0,0 +1,21 @@ +diff --git i/minisat/core/SolverTypes.h w/minisat/core/SolverTypes.h +--- i/minisat/core/SolverTypes.h ++++ w/minisat/core/SolverTypes.h +@@ -47,7 +47,7 @@ struct Lit { + int x; + + // Use this as a constructor: +- friend Lit mkLit(Var var, bool sign = false); ++ friend Lit mkLit(Var var, bool sign); + + bool operator == (Lit p) const { return x == p.x; } + bool operator != (Lit p) const { return x != p.x; } +@@ -55,7 +55,7 @@ struct Lit { + }; + + +-inline Lit mkLit (Var var, bool sign) { Lit p; p.x = var + var + (int)sign; return p; } ++inline Lit mkLit (Var var, bool sign = false) { Lit p; p.x = var + var + (int)sign; return p; } + inline Lit operator ~(Lit p) { Lit q; q.x = p.x ^ 1; return q; } + inline Lit operator ^(Lit p, bool b) { Lit q; q.x = p.x ^ (unsigned int)b; return q; } + inline bool sign (Lit p) { return p.x & 1; } diff --git a/nixpkgs/pkgs/applications/science/logic/saw-tools/default.nix b/nixpkgs/pkgs/applications/science/logic/saw-tools/default.nix new file mode 100644 index 000000000000..b6291bfae369 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/saw-tools/default.nix @@ -0,0 +1,59 @@ +{ lib, stdenv, fetchurl, gmp4, ncurses, zlib, clang }: + +let + libPath = lib.makeLibraryPath + [ stdenv.cc.libc + stdenv.cc.cc + gmp4 + ncurses + zlib + ] + ":${stdenv.cc.cc.lib}/lib64"; + + url = "https://github.com/GaloisInc/saw-script/releases/download"; + + saw-bin = + if stdenv.hostPlatform.system == "i686-linux" + then fetchurl { + url = url + "/v0.1.1-dev/saw-0.1.1-dev-2015-07-31-CentOS6-32.tar.gz"; + sha256 = "126iag5nnvndi78c921z7vjrjfwcspn1hlxwwhzmqm4rvbhhr9v9"; + } + else fetchurl { + url = url + "/v0.1.1-dev/saw-0.1.1-dev-2015-07-31-CentOS6-64.tar.gz"; + sha256 = "07gyf319v6ama6n1aj96403as04bixi8mbisfy7f7va689zklflr"; + }; +in +stdenv.mkDerivation { + pname = "saw-tools"; + version = "0.1.1-20150731"; + + src = saw-bin; + + installPhase = '' + mkdir -p $out/lib $out/share + + mv bin $out/bin + mv doc $out/share + + ln -s ${ncurses.out}/lib/libtinfo.so.5 $out/lib/libtinfo.so.5 + ln -s ${stdenv.cc.libc}/lib/libpthread.so.0 $out/lib/libpthread.so.0 + + # Add a clang symlink for easy building with a suitable compiler. + ln -s ${clang}/bin/clang $out/bin/saw-clang + ''; + + fixupPhase = '' + for x in bin/bcdump bin/extcore-info bin/jss bin/llvm-disasm bin/lss bin/saw; do + patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ + --set-rpath "$out/lib:${libPath}" $out/$x; + done + ''; + + meta = { + description = "Tools for software verification and analysis"; + homepage = "https://saw.galois.com"; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + license = lib.licenses.bsd3; + platforms = lib.platforms.linux; + maintainers = [ lib.maintainers.thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/sharpsat-td/default.nix b/nixpkgs/pkgs/applications/science/logic/sharpsat-td/default.nix new file mode 100644 index 000000000000..2f2128d542f1 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/sharpsat-td/default.nix @@ -0,0 +1,83 @@ +{ lib +, stdenv +, fetchFromGitHub +, fetchzip +, cmake +, gmp +, mpfr +}: + +let + satlib-bmc = fetchzip { + url = "https://www.cs.ubc.ca/~hoos/SATLIB/Benchmarks/SAT/BMC/bmc.tar.gz"; + stripRoot = false; + sha256 = "sha256-F1Jfrj4iMMf/3LFCShIDMs4JfLkJ51Z4wkL1FDT9b/A="; + }; + + # needed for mpfr 4.2.0+ support + mpreal = fetchFromGitHub { + owner = "advanpix"; + repo = "mpreal"; + rev = "mpfrc++-3.6.9"; + sha256 = "sha256-l61SKEx4pBocADrEGPVacQ6F2ep9IuvNZ8W08dKeZKg="; + }; + +in stdenv.mkDerivation rec { + pname = "sharpsat-td"; + version = "unstable-2021-09-05"; + + src = fetchFromGitHub { + owner = "Laakeri"; + repo = pname; + rev = "b9bb015305ea5d4e1ac7141691d0fe55ca983d31"; + sha256 = "sha256-FE+DUd58eRr5w9RFw0fMHfjIiNDWIcG7XbyWJ/pI28U="; + }; + + postPatch = '' + # just say no to bundled binaries + rm bin/* + + # ensure resultant build calls its own binaries + substituteInPlace src/decomposition.cpp \ + --replace '"../../../flow-cutter-pace17/flow_cutter_pace17"' '"'"$out"'/bin/flow_cutter_pace17"' + substituteInPlace src/preprocessor/treewidth.cpp \ + --replace '"./flow_cutter_pace17"' '"'"$out"'/bin/flow_cutter_pace17"' + + # replace bundled version of mpreal/mpfrc++ + rm -r src/mpfr + cp -r ${mpreal} src/mpfr + ''; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ gmp mpfr ]; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin + install -Dm755 sharpSAT $out/bin/sharpSAT-td + install -Dm755 flow_cutter_pace17 $out/bin/flow_cutter_pace17 + + runHook postInstall + ''; + + doInstallCheck = true; + installCheckPhase = '' + runHook preInstallCheck + + # "correct" answer from https://sites.google.com/site/marcthurley/sharpsat/benchmarks/collected-model-counts + $out/bin/sharpSAT-td -decot 1 -decow 100 -cs 3500 -tmpdir "$TMPDIR" \ + ${satlib-bmc}/bmc-ibm-1.cnf | grep -F 'c s exact arb int 7333984412904350856728851870196181665291102236046537207120878033973328441091390427157620940515935993557837912658856672133150412904529478729364681871717139154252602322050981277183916105207406949425074710972297902317183503443350157267211568852295978718386711142950559533715161449971311118966214098944000' + + runHook postInstallCheck + ''; + + meta = { + description = "A fast solver for the #SAT model counting problem"; + homepage = "https://github.com/Laakeri/sharpsat-td"; + license = with lib.licenses; [ mit asl20 ]; + maintainers = with lib.maintainers; [ ris ]; + # uses clhash, which is non-portable + platforms = [ "x86_64-linux" "x86_64-darwin" ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/spass/default.nix b/nixpkgs/pkgs/applications/science/logic/spass/default.nix new file mode 100644 index 000000000000..77b297b4fbbb --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/spass/default.nix @@ -0,0 +1,42 @@ +{ lib, stdenv, fetchurl, bison, flex }: + +let + baseVersion="3"; + minorVersion="9"; + + extraTools = "FLOTTER prolog2dfg dfg2otter dfg2dimacs dfg2tptp" + + " dfg2ascii dfg2dfg tptp2dfg dimacs2dfg pgen rescmp"; +in + +stdenv.mkDerivation { + pname = "spass"; + version = "${baseVersion}.${minorVersion}"; + + src = fetchurl { + url = "http://www.spass-prover.org/download/sources/spass${baseVersion}${minorVersion}.tgz"; + sha256 = "11cyn3kcff4r79rsw2s0xm6rdb8bi0kpkazv2b48jhcms7xw75qp"; + }; + + sourceRoot = "."; + + nativeBuildInputs = [ bison flex ]; + + buildPhase = '' + make RM="rm -f" proparser.c ${extraTools} opt + ''; + installPhase = '' + mkdir -p $out/bin + install -m0755 SPASS ${extraTools} $out/bin/ + ''; + + meta = with lib; { + description = "Automated theorem prover for first-order logic"; + maintainers = with maintainers; + [ + raskin + ]; + platforms = platforms.unix; + license = licenses.bsd2; + downloadPage = "http://www.spass-prover.org/download/index.html"; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/statverif/default.nix b/nixpkgs/pkgs/applications/science/logic/statverif/default.nix new file mode 100644 index 000000000000..1f6238977551 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/statverif/default.nix @@ -0,0 +1,36 @@ +{ lib, stdenv, fetchurl, ocaml }: + +stdenv.mkDerivation rec { + pname = "statverif"; + version = "1.86pl4"; + + src = fetchurl { + url = "http://prosecco.gforge.inria.fr/personal/bblanche/proverif/proverif${version}.tar.gz"; + sha256 = "163vdcixs764jj8xa08w80qm4kcijf7xj911yp8jvz6pi1q5g13i"; + }; + + pf-patch = fetchurl { + url = "http://markryan.eu/research/statverif/files/proverif-${version}-statverif-2657ab4.patch"; + sha256 = "113jjhi1qkcggbsmbw8fa9ln8vs7vy2r288szks7rn0jjn0wxmbw"; + }; + + strictDeps = true; + + nativeBuildInputs = [ ocaml ]; + + patchPhase = "patch -p1 < ${pf-patch}"; + buildPhase = "./build"; + installPhase = '' + mkdir -p $out/bin + cp ./proverif $out/bin/statverif + cp ./proveriftotex $out/bin/statveriftotex + ''; + + meta = { + description = "Verification of stateful processes (via Proverif)"; + homepage = "https://markryan.eu/research/statverif/"; + license = lib.licenses.gpl2; + platforms = lib.platforms.unix; + maintainers = [ lib.maintainers.thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/stp/default.nix b/nixpkgs/pkgs/applications/science/logic/stp/default.nix new file mode 100644 index 000000000000..fb41ea07f5a1 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/stp/default.nix @@ -0,0 +1,47 @@ +{ lib, stdenv, cmake, boost, bison, flex, fetchFromGitHub, perl +, python3, python3Packages, zlib, minisat, cryptominisat }: + +stdenv.mkDerivation rec { + pname = "stp"; + version = "2.3.3"; + + src = fetchFromGitHub { + owner = "stp"; + repo = "stp"; + rev = version; + sha256 = "1yg2v4wmswh1sigk47drwsxyayr472mf4i47lqmlcgn9hhbx1q87"; + }; + patches = [ + # Fix missing type declaration + # due to undeterminisitic compilation + # of circularly dependent headers + ./stdint.patch + ]; + + postPatch = '' + # Upstream fix for gcc-13 support: + # https://github.com/stp/stp/pull/462 + # Can't apply it as is as patch context changed in ither patches. + # TODO: remove me on 2.4 release + sed -e '1i #include <cstdint>' -i include/stp/AST/ASTNode.h + ''; + + buildInputs = [ boost zlib minisat cryptominisat python3 ]; + nativeBuildInputs = [ cmake bison flex perl ]; + preConfigure = '' + python_install_dir=$out/${python3Packages.python.sitePackages} + mkdir -p $python_install_dir + cmakeFlagsArray=( + $cmakeFlagsArray + "-DBUILD_SHARED_LIBS=ON" + "-DPYTHON_LIB_INSTALL_DIR=$python_install_dir" + ) + ''; + + meta = with lib; { + description = "Simple Theorem Prover"; + maintainers = with maintainers; [ McSinyx ]; + platforms = platforms.linux; + license = licenses.mit; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/stp/stdint.patch b/nixpkgs/pkgs/applications/science/logic/stp/stdint.patch new file mode 100644 index 000000000000..6595d5561731 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/stp/stdint.patch @@ -0,0 +1,16 @@ +diff --git a/include/stp/AST/ASTNode.h b/include/stp/AST/ASTNode.h +index 91acd726182c..0a17db23ffbf 100644 +--- a/include/stp/AST/ASTNode.h ++++ b/include/stp/AST/ASTNode.h +@@ -24,9 +24,10 @@ THE SOFTWARE. + #ifndef ASTNODE_H + #define ASTNODE_H + ++#include "stp/AST/ASTInternal.h" + #include "stp/AST/NodeFactory/HashingNodeFactory.h" ++#include "stp/AST/UsefulDefs.h" + #include "stp/Util/Attributes.h" +-#include "ASTInternal.h" + #include "stp/Globals/Globals.h" + + namespace stp diff --git a/nixpkgs/pkgs/applications/science/logic/surelog/default.nix b/nixpkgs/pkgs/applications/science/logic/surelog/default.nix new file mode 100644 index 000000000000..3b58331562a2 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/surelog/default.nix @@ -0,0 +1,75 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, python3 +, pkg-config +, libuuid +, openjdk +, gperftools +, gtest +, uhdm +, antlr4 +, capnproto +, nlohmann_json +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "surelog"; + version = "1.80"; + + src = fetchFromGitHub { + owner = "chipsalliance"; + repo = finalAttrs.pname; + rev = "v${finalAttrs.version}"; + hash = "sha256-jpt/5h0HnkiJowyVDoMSyiuL6/dokB4xg1sdyctHrDs="; + fetchSubmodules = false; # we use all dependencies from nix + }; + + nativeBuildInputs = [ + cmake + pkg-config + openjdk + (python3.withPackages (p: with p; [ + psutil + orderedmultidict + ])) + gtest + antlr4 + ]; + + buildInputs = [ + libuuid + gperftools + uhdm + capnproto + antlr4.runtime.cpp + nlohmann_json + ]; + + cmakeFlags = [ + "-DSURELOG_USE_HOST_CAPNP=On" + "-DSURELOG_USE_HOST_UHDM=On" + "-DSURELOG_USE_HOST_GTEST=On" + "-DSURELOG_USE_HOST_ANTLR=On" + "-DSURELOG_USE_HOST_JSON=On" + "-DANTLR_JAR_LOCATION=${antlr4.jarLocation}" + ]; + + doCheck = true; + checkPhase = '' + runHook preCheck + make -j $NIX_BUILD_CORES UnitTests + ctest --output-on-failure + runHook postCheck + ''; + + meta = { + description = "SystemVerilog 2017 Pre-processor, Parser, Elaborator, UHDM Compiler"; + homepage = "https://github.com/chipsalliance/Surelog"; + license = lib.licenses.asl20; + mainProgram = "surelog"; + maintainers = with lib.maintainers; [ matthuszagh ]; + platforms = lib.platforms.all; + }; +}) diff --git a/nixpkgs/pkgs/applications/science/logic/symbiyosys/default.nix b/nixpkgs/pkgs/applications/science/logic/symbiyosys/default.nix new file mode 100644 index 000000000000..19c021684b3f --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/symbiyosys/default.nix @@ -0,0 +1,62 @@ +{ lib, stdenv, fetchFromGitHub +, bash, python3, yosys +, yices, boolector, z3, aiger +}: + +stdenv.mkDerivation { + pname = "symbiyosys"; + version = "2021.11.30"; + + src = fetchFromGitHub { + owner = "YosysHQ"; + repo = "SymbiYosys"; + rev = "b409b1179e36d2a3fff66c85b7d4e271769a2d9e"; + hash = "sha256-S7of2upntiMkSdh4kf1RsrjriS31Eh8iEcVvG36isQg="; + }; + + buildInputs = [ ]; + patchPhase = '' + patchShebangs . + + # Fix up Yosys imports + substituteInPlace sbysrc/sby.py \ + --replace "##yosys-sys-path##" \ + "sys.path += [p + \"/share/yosys/python3/\" for p in [\"$out\", \"${yosys}\"]]" + + # Fix various executable references + substituteInPlace sbysrc/sby_core.py \ + --replace '"/usr/bin/env", "bash"' '"${bash}/bin/bash"' \ + --replace ', "btormc"' ', "${boolector}/bin/btormc"' \ + --replace ', "aigbmc"' ', "${aiger}/bin/aigbmc"' + + substituteInPlace sbysrc/sby_core.py \ + --replace '##yosys-program-prefix##' '"${yosys}/bin/"' + + substituteInPlace sbysrc/sby.py \ + --replace '/usr/bin/env python3' '${python3}/bin/python' + ''; + + buildPhase = "true"; + + installPhase = '' + mkdir -p $out/bin $out/share/yosys/python3 + + cp sbysrc/sby_*.py $out/share/yosys/python3/ + cp sbysrc/sby.py $out/bin/sby + + chmod +x $out/bin/sby + ''; + + doCheck = false; # not all provers are yet packaged... + nativeCheckInputs = [ python3 yosys boolector yices z3 aiger ]; + checkPhase = "make test"; + + meta = { + description = "Tooling for Yosys-based verification flows"; + homepage = "https://symbiyosys.readthedocs.io/"; + license = lib.licenses.isc; + maintainers = with lib.maintainers; [ thoughtpolice emily ]; + mainProgram = "sby"; + platforms = lib.platforms.all; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/symfpu/default.nix b/nixpkgs/pkgs/applications/science/logic/symfpu/default.nix new file mode 100644 index 000000000000..af61b7c617c7 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/symfpu/default.nix @@ -0,0 +1,26 @@ +{ lib, stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + pname = "symfpu"; + version = "unstable-2019-05-17"; + + src = fetchFromGitHub { + owner = "martin-cs"; + repo = "symfpu"; + rev = "8fbe139bf0071cbe0758d2f6690a546c69ff0053"; + sha256 = "1jf5lkn67q136ppfacw3lsry369v7mdr1rhidzjpbz18jfy9zl9q"; + }; + + installPhase = '' + mkdir -p $out/symfpu + cp -r * $out/symfpu/ + ''; + + meta = with lib; { + description = "A (concrete or symbolic) implementation of IEEE-754 / SMT-LIB floating-point"; + homepage = "https://github.com/martin-cs/symfpu"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = with maintainers; [ shadaj ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/tamarin-prover/default.nix b/nixpkgs/pkgs/applications/science/logic/tamarin-prover/default.nix new file mode 100644 index 000000000000..09ef2d7d4637 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/tamarin-prover/default.nix @@ -0,0 +1,133 @@ +{ haskellPackages, mkDerivation, fetchFromGitHub, fetchpatch, lib, stdenv +# the following are non-haskell dependencies +, makeWrapper, which, maude, graphviz, glibcLocales +}: + +let + version = "1.8.0"; + src = fetchFromGitHub { + owner = "tamarin-prover"; + repo = "tamarin-prover"; + rev = version; + sha256 = "sha256-ujnaUdbjqajmkphOS4Fs4QBCRGX4JZkQ2p1X2jripww="; + }; + + # tamarin has its own dependencies, but they're kept inside the repo, + # no submodules. this factors out the common metadata among all derivations + common = pname: src: { + inherit pname version src; + + license = lib.licenses.gpl3; + homepage = "https://tamarin-prover.github.io"; + description = "Security protocol verification in the symbolic model"; + maintainers = [ lib.maintainers.thoughtpolice ]; + hydraPlatforms = lib.platforms.linux; # maude is broken on darwin + }; + + # tamarin use symlinks to the LICENSE and Setup.hs files, so for these sublibraries + # we set the patchPhase to fix that. otherwise, cabal cries a lot. + replaceSymlinks = '' + cp --remove-destination ${src}/LICENSE .; + cp --remove-destination ${src}/Setup.hs .; + ''; + + tamarin-prover-utils = mkDerivation (common "tamarin-prover-utils" (src + "/lib/utils") // { + postPatch = replaceSymlinks; + libraryHaskellDepends = with haskellPackages; [ + base64-bytestring blaze-builder + dlist exceptions fclabels safe SHA syb + ]; + }); + + tamarin-prover-term = mkDerivation (common "tamarin-prover-term" (src + "/lib/term") // { + postPatch = replaceSymlinks; + libraryHaskellDepends = (with haskellPackages; [ + attoparsec HUnit + ]) ++ [ tamarin-prover-utils ]; + }); + + tamarin-prover-theory = mkDerivation (common "tamarin-prover-theory" (src + "/lib/theory") // { + postPatch = replaceSymlinks; + doHaddock = false; # broken + libraryHaskellDepends = (with haskellPackages; [ + aeson aeson-pretty parallel uniplate + regex-pcre-builtin regex-posix split + ]) ++ [ tamarin-prover-utils tamarin-prover-term ]; + }); + + tamarin-prover-sapic = mkDerivation (common "tamarin-prover-sapic" (src + "/lib/sapic") // { + postPatch = "cp --remove-destination ${src}/LICENSE ."; + doHaddock = false; # broken + libraryHaskellDepends = (with haskellPackages; [ + raw-strings-qq + ]) ++ [ tamarin-prover-theory ]; + }); + + tamarin-prover-accountability = mkDerivation (common "tamarin-prover-accountability" (src + "/lib/accountability") // { + postPatch = "cp --remove-destination ${src}/LICENSE ."; + doHaddock = false; # broken + libraryHaskellDepends = (with haskellPackages; [ + raw-strings-qq + ]) ++ [ + tamarin-prover-utils + tamarin-prover-term + tamarin-prover-theory + ]; + }); + + tamarin-prover-export = mkDerivation (common "tamarin-prover-export" (src + "/lib/export") // { + postPatch = "cp --remove-destination ${src}/LICENSE ."; + doHaddock = false; # broken + libraryHaskellDepends = (with haskellPackages; [ + HStringTemplate + ]) ++ [ + tamarin-prover-utils + tamarin-prover-term + tamarin-prover-theory + tamarin-prover-sapic + ]; + }); + +in +mkDerivation (common "tamarin-prover" src // { + isLibrary = false; + isExecutable = true; + + patches = [ ]; + + # strip out unneeded deps manually + doHaddock = false; + enableSharedExecutables = false; + postFixup = "rm -rf $out/lib $out/nix-support $out/share/doc"; + + # wrap the prover to be sure it can find maude, sapic, etc + executableToolDepends = [ makeWrapper which maude graphviz ]; + postInstall = '' + wrapProgram $out/bin/tamarin-prover \ + '' + lib.optionalString stdenv.isLinux '' + --set LOCALE_ARCHIVE "${glibcLocales}/lib/locale/locale-archive" \ + '' + '' + --prefix PATH : ${lib.makeBinPath [ which maude graphviz ]} + # so that the package can be used as a vim plugin to install syntax coloration + install -Dt $out/share/vim-plugins/tamarin-prover/syntax/ etc/syntax/spthy.vim + install etc/filetype.vim -D $out/share/vim-plugins/tamarin-prover/ftdetect/tamarin.vim + mkdir -p $out/share/nvim + ln -s $out/share/vim-plugins/tamarin-prover $out/share/nvim/site + # Emacs SPTHY major mode + install -Dt $out/share/emacs/site-lisp etc/spthy-mode.el + ''; + + checkPhase = "./dist/build/tamarin-prover/tamarin-prover test"; + + executableHaskellDepends = (with haskellPackages; [ + binary-instances binary-orphans blaze-html conduit file-embed + gitrev http-types lifted-base monad-control + resourcet shakespeare threads wai warp yesod-core yesod-static + ]) ++ [ tamarin-prover-utils + tamarin-prover-sapic + tamarin-prover-accountability + tamarin-prover-export + tamarin-prover-term + tamarin-prover-theory + ]; +}) diff --git a/nixpkgs/pkgs/applications/science/logic/tlaplus/default.nix b/nixpkgs/pkgs/applications/science/logic/tlaplus/default.nix new file mode 100644 index 000000000000..2d2542a607a5 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/tlaplus/default.nix @@ -0,0 +1,37 @@ +{ lib, stdenv, fetchurl, makeWrapper, jre }: + +stdenv.mkDerivation rec { + pname = "tlaplus"; + version = "1.7.3"; + + src = fetchurl { + url = "https://github.com/tlaplus/tlaplus/releases/download/v${version}/tla2tools.jar"; + sha256 = "sha256-5P8V6oH05voSXAgwBDclSxdxdMalrfaNpElkar4IUZ0="; + }; + + nativeBuildInputs = [ makeWrapper ]; + + dontUnpack = true; + installPhase = '' + mkdir -p $out/share/java $out/bin + cp $src $out/share/java/tla2tools.jar + + makeWrapper ${jre}/bin/java $out/bin/tlc \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar tlc2.TLC" + makeWrapper ${jre}/bin/java $out/bin/tlasany \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar tla2sany.SANY" + makeWrapper ${jre}/bin/java $out/bin/pcal \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar pcal.trans" + makeWrapper ${jre}/bin/java $out/bin/tlatex \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar tla2tex.TLA" + ''; + + meta = { + description = "An algorithm specification language with model checking tools"; + homepage = "http://lamport.azurewebsites.net/tla/tla.html"; + sourceProvenance = with lib.sourceTypes; [ binaryBytecode ]; + license = lib.licenses.mit; + platforms = lib.platforms.unix; + maintainers = with lib.maintainers; [ florentc thoughtpolice mgregson ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/tlaplus/tlaplus18.nix b/nixpkgs/pkgs/applications/science/logic/tlaplus/tlaplus18.nix new file mode 100644 index 000000000000..4f34846a8927 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/tlaplus/tlaplus18.nix @@ -0,0 +1,39 @@ +{ lib, stdenv, fetchurl, makeWrapper, jre }: + +stdenv.mkDerivation rec { + pname = "tlaplus"; + version = "1.8.0"; + + src = fetchurl { + url = "https://github.com/tlaplus/tlaplus/releases/download/v${version}/tla2tools.jar"; + sha256 = "sha256-OXgpd1xuyvhveunlybBi/N6jnxtp/J8Kmp8PYX3eSZ4="; + }; + + nativeBuildInputs = [ makeWrapper ]; + + dontUnpack = true; + installPhase = '' + mkdir -p $out/share/java $out/bin + cp $src $out/share/java/tla2tools.jar + + makeWrapper ${jre}/bin/java $out/bin/tlc \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar tlc2.TLC" + makeWrapper ${jre}/bin/java $out/bin/tlasany \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar tla2sany.SANY" + makeWrapper ${jre}/bin/java $out/bin/pcal \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar pcal.trans" + makeWrapper ${jre}/bin/java $out/bin/tlatex \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar tla2tex.TLA" + makeWrapper ${jre}/bin/java $out/bin/tlarepl \ + --add-flags "-XX:+UseParallelGC -cp $out/share/java/tla2tools.jar tlc2.REPL" + ''; + + meta = { + description = "An algorithm specification language with model checking tools"; + homepage = "http://lamport.azurewebsites.net/tla/tla.html"; + sourceProvenance = with lib.sourceTypes; [ binaryBytecode ]; + license = lib.licenses.mit; + platforms = lib.platforms.unix; + maintainers = with lib.maintainers; [ florentc thoughtpolice mgregson ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/tlaplus/tlaps.nix b/nixpkgs/pkgs/applications/science/logic/tlaplus/tlaps.nix new file mode 100644 index 000000000000..59afbc094e40 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/tlaplus/tlaps.nix @@ -0,0 +1,60 @@ +{ fetchurl +, lib +, stdenv +, ocaml +, isabelle +, cvc3 +, perl +, wget +, which +}: + +stdenv.mkDerivation rec { + pname = "tlaps"; + version = "1.4.5"; + src = fetchurl { + url = "https://tla.msr-inria.inria.fr/tlaps/dist/${version}/tlaps-${version}.tar.gz"; + sha256 = "c296998acd14d5b93a8d5be7ee178007ef179957465966576bda26944b1b7fca"; + }; + + strictDeps = true; + + nativeBuildInputs = [ ocaml isabelle cvc3 perl wget which ]; + + installPhase = '' + mkdir -pv "$out" + export HOME="$out" + export PATH=$out/bin:$PATH + + pushd zenon + ./configure --prefix $out + make + make install + popd + + pushd isabelle + isabelle build -b Pure + popd + + pushd tlapm + ./configure --prefix $out + make all + make install + ''; + + meta = { + description = "Mechanically check TLA+ proofs"; + longDescription = '' + TLA+ is a general-purpose formal specification language that is + particularly useful for describing concurrent and distributed + systems. The TLA+ proof language is declarative, hierarchical, + and scalable to large system specifications. It provides a + consistent abstraction over the various “backend” verifiers. + ''; + homepage = "https://tla.msr-inria.inria.fr/tlaps/content/Home.html"; + license = lib.licenses.bsd2; + platforms = lib.platforms.unix; + maintainers = with lib.maintainers; [ florentc ]; + }; + +} diff --git a/nixpkgs/pkgs/applications/science/logic/tlaplus/toolbox.nix b/nixpkgs/pkgs/applications/science/logic/tlaplus/toolbox.nix new file mode 100644 index 000000000000..86c3db9942a1 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/tlaplus/toolbox.nix @@ -0,0 +1,104 @@ +{ lib +, fetchzip +, makeShellWrapper +, makeDesktopItem +, stdenv +, gtk3 +, libXtst +, glib +, zlib +, wrapGAppsHook +}: + +let + desktopItem = makeDesktopItem rec { + name = "TLA+Toolbox"; + exec = "tla-toolbox"; + icon = "tla-toolbox"; + comment = "IDE for TLA+"; + desktopName = name; + genericName = comment; + categories = [ "Development" ]; + startupWMClass = "TLA+ Toolbox"; + }; + + +in +stdenv.mkDerivation rec { + pname = "tla-toolbox"; + version = "1.7.1"; + src = fetchzip { + url = "https://tla.msr-inria.inria.fr/tlatoolbox/products/TLAToolbox-${version}-linux.gtk.x86_64.zip"; + sha256 = "02a2y2mkfab5cczw8g604m61h4xr0apir49zbd1aq6mmgcgngw80"; + }; + + buildInputs = [ gtk3 ]; + + nativeBuildInputs = [ + makeShellWrapper + wrapGAppsHook + ]; + + dontWrapGApps = true; + + installPhase = '' + runHook preInstall + + mkdir -p "$out/bin" + cp -r "$src" "$out/toolbox" + chmod -R +w "$out/toolbox" + + fixupPhase + gappsWrapperArgsHook + + patchelf \ + --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ + "$out/toolbox/toolbox" + + patchelf \ + --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ + --set-rpath "${lib.makeLibraryPath [ zlib ]}:$(patchelf --print-rpath $(find "$out/toolbox" -name java))" \ + "$(find "$out/toolbox" -name java)" + + patchelf \ + --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ + "$(find "$out/toolbox" -name jspawnhelper)" + + makeShellWrapper $out/toolbox/toolbox $out/bin/tla-toolbox \ + --chdir "$out/toolbox" \ + --add-flags "-data ~/.tla-toolbox" \ + --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ gtk3 libXtst glib zlib ]}" \ + "''${gappsWrapperArgs[@]}" + + echo -e "\nCreating TLA Toolbox icons..." + pushd "$src" + for icon_in in $(find . -path "./plugins/*/icons/full/etool16/tla_launch_check_wiz_*.png") + do + icon_size=$(echo $icon_in | grep -Po "wiz_\K[0-9]+") + icon_out="$out/share/icons/hicolor/$icon_size""x$icon_size/apps/tla-toolbox.png" + mkdir -p "$(dirname $icon_out)" + cp "$icon_in" "$icon_out" + done + popd + + echo -e "\nCreating TLA Toolbox desktop entry..." + cp -r "${desktopItem}/share/applications"* "$out/share/applications" + + runHook postInstall + ''; + + meta = { + homepage = "http://research.microsoft.com/en-us/um/people/lamport/tla/toolbox.html"; + description = "IDE for the TLA+ tools"; + longDescription = '' + Integrated development environment for the TLA+ tools, based on Eclipse. You can use it + to create and edit your specs, run the PlusCal translator, view the pretty-printed + versions of your modules, run the TLC model checker, and run TLAPS, the TLA+ proof system. + ''; + # http://lamport.azurewebsites.net/tla/license.html + license = with lib.licenses; [ mit ]; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + platforms = [ "x86_64-linux" ]; + maintainers = [ ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/tptp/default.nix b/nixpkgs/pkgs/applications/science/logic/tptp/default.nix new file mode 100644 index 000000000000..5df511ebaa8e --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/tptp/default.nix @@ -0,0 +1,50 @@ +{ lib, stdenv, fetchurl, yap, tcsh, perl, patchelf }: + +stdenv.mkDerivation rec { + pname = "TPTP"; + version = "7.2.0"; + + src = fetchurl { + urls = [ + "http://tptp.cs.miami.edu/TPTP/Distribution/TPTP-v${version}.tgz" + "http://tptp.cs.miami.edu/TPTP/Archive/TPTP-v${version}.tgz" + ]; + sha256 = "0yq8452b6mym4yscy46pshg0z2my8xi74b5bp2qlxd5bjwcrg6rl"; + }; + + nativeBuildInputs = [ patchelf ]; + buildInputs = [ tcsh yap perl ]; + + installPhase = '' + sharedir=$out/share/tptp + + mkdir -p $sharedir + cp -r ./ $sharedir + + export TPTP=$sharedir + + tcsh $sharedir/Scripts/tptp2T_install -default + + substituteInPlace $sharedir/TPTP2X/tptp2X_install --replace /bin/mv mv + tcsh $sharedir/TPTP2X/tptp2X_install -default + + patchelf --interpreter $(cat $NIX_CC/nix-support/dynamic-linker) $sharedir/Scripts/tptp4X + + mkdir -p $out/bin + ln -s $sharedir/TPTP2X/tptp2X $out/bin + ln -s $sharedir/Scripts/tptp2T $out/bin + ln -s $sharedir/Scripts/tptp4X $out/bin + ''; + + meta = with lib; { + description = "Thousands of problems for theorem provers and tools"; + maintainers = with maintainers; [ raskin gebner ]; + # 6.3 GiB of data. Installation is unpacking and editing a few files. + # No sense in letting Hydra build it. + # Also, it is unclear what is covered by "verbatim" - we will edit configs + hydraPlatforms = []; + platforms = platforms.all; + sourceProvenance = with sourceTypes; [ binaryNativeCode ]; + license = licenses.unfreeRedistributable; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/twelf/default.nix b/nixpkgs/pkgs/applications/science/logic/twelf/default.nix new file mode 100644 index 000000000000..67779b2b5722 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/twelf/default.nix @@ -0,0 +1,51 @@ +{ lib, stdenv, fetchurl, pkg-config, smlnj, rsync }: + +stdenv.mkDerivation rec { + pname = "twelf"; + version = "1.7.1"; + + src = fetchurl { + url = "http://twelf.plparty.org/releases/twelf-src-${version}.tar.gz"; + sha256 = "0fi1kbs9hrdrm1x4k13angpjasxlyd1gc3ys8ah54i75qbcd9c4i"; + }; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ smlnj rsync ]; + + buildPhase = '' + export SMLNJ_HOME=${smlnj} + make smlnj + ''; + + installPhase = '' + mkdir -p $out/bin + rsync -av bin/{*,.heap} $out/bin/ + bin/.mkexec ${smlnj}/bin/sml $out/ twelf-server twelf-server + + substituteInPlace emacs/twelf-init.el \ + --replace '(concat twelf-root "emacs")' '(concat twelf-root "share/emacs/site-lisp/twelf")' + + mkdir -p $out/share/emacs/site-lisp/twelf/ + rsync -av emacs/ $out/share/emacs/site-lisp/twelf/ + + mkdir -p $out/share/twelf/examples + rsync -av examples/ $out/share/twelf/examples/ + mkdir -p $out/share/twelf/vim + rsync -av vim/ $out/share/twelf/vim/ + ''; + + meta = { + description = "Logic proof assistant"; + longDescription = '' + Twelf is a language used to specify, implement, and prove properties of + deductive systems such as programming languages and logics. Large + research projects using Twelf include the TALT typed assembly language, + a foundational proof-carrying-code system, and a type safety proof for + Standard ML. + ''; + homepage = "http://twelf.org/wiki/Main_Page"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ jwiegley ]; + platforms = lib.platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/uhdm/default.nix b/nixpkgs/pkgs/applications/science/logic/uhdm/default.nix new file mode 100644 index 000000000000..6698e47844a2 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/uhdm/default.nix @@ -0,0 +1,48 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, python3 +, capnproto +, gtest +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "UHDM"; + # When updating this package, also consider updating science/logic/surelog + version = "1.80"; + + src = fetchFromGitHub { + owner = "chipsalliance"; + repo = finalAttrs.pname; + rev = "v${finalAttrs.version}"; + hash = "sha256-/aWiN+DPlIjI89u5kx6QoyrGD4DOJTHXxIZ0qHJNDls="; + fetchSubmodules = false; # we use all dependencies from nix + }; + + nativeBuildInputs = [ + cmake + (python3.withPackages (p: with p; [ orderedmultidict ])) + gtest + ]; + + buildInputs = [ + capnproto + ]; + + cmakeFlags = [ + "-DUHDM_USE_HOST_GTEST=On" + "-DUHDM_USE_HOST_CAPNP=On" + ]; + + doCheck = true; + checkPhase = "make test"; + + meta = { + description = "Universal Hardware Data Model"; + homepage = "https://github.com/chipsalliance/UHDM"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ matthuszagh ]; + platforms = lib.platforms.all; + }; +}) diff --git a/nixpkgs/pkgs/applications/science/logic/vampire/default.nix b/nixpkgs/pkgs/applications/science/logic/vampire/default.nix new file mode 100644 index 000000000000..a3c1aa3f131d --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/vampire/default.nix @@ -0,0 +1,54 @@ +{ lib, stdenv, fetchFromGitHub, fetchpatch, z3, zlib }: + +stdenv.mkDerivation rec { + pname = "vampire"; + version = "4.6.1"; + + src = fetchFromGitHub { + owner = "vprover"; + repo = "vampire"; + rev = "v${version}"; + sha256 = "0z71nxjak3ibp842r8iv37w1x3cbkrmjs88lpvxqb4sgrbyk38zd"; + }; + + buildInputs = [ z3 zlib ]; + + makeFlags = [ "vampire_z3_rel" "CC:=$(CC)" "CXX:=$(CXX)" ]; + + patches = [ + # https://github.com/vprover/vampire/pull/54 + (fetchpatch { + name = "fix-apple-cygwin-defines.patch"; + url = "https://github.com/vprover/vampire/commit/b4bddd3bcac6a7688742da75c369b7b3213f6d1c.patch"; + sha256 = "0i6nrc50wlg1dqxq38lkpx4rmfb3lf7s8f95l4jkvqp0nxa20cza"; + }) + # https://github.com/vprover/vampire/pull/55 + (fetchpatch { + name = "fix-wait-any.patch"; + url = "https://github.com/vprover/vampire/commit/6da10eabb333aec54cdf13833ea33cb851159543.patch"; + sha256 = "1pwfpwpl23bqsgkmmvw6bnniyvp5j9v8l3z9s9pllfabnfcrcz9l"; + }) + ]; + + postPatch = '' + patch -p1 -i ${../avy/minisat-fenv.patch} -d Minisat || true + ''; + + enableParallelBuilding = true; + + fixupPhase = '' + rm -rf z3 + ''; + + installPhase = '' + install -m0755 -D vampire_z3_rel* $out/bin/vampire + ''; + + meta = with lib; { + homepage = "https://vprover.github.io/"; + description = "The Vampire Theorem Prover"; + platforms = platforms.unix; + license = licenses.bsd3; + maintainers = with maintainers; [ gebner ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/verifast/default.nix b/nixpkgs/pkgs/applications/science/logic/verifast/default.nix new file mode 100644 index 000000000000..a1f5ec65a3be --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/verifast/default.nix @@ -0,0 +1,51 @@ +{ lib, stdenv, fetchurl, gtk2, gdk-pixbuf, atk, pango, glib, cairo, freetype +, fontconfig, libxml2, gnome2 }: + +let + + libPath = lib.makeLibraryPath + [ stdenv.cc.libc stdenv.cc.cc gtk2 gdk-pixbuf atk pango glib cairo + freetype fontconfig libxml2 gnome2.gtksourceview + ] + ":${stdenv.cc.cc.lib}/lib64:$out/libexec"; + + patchExe = x: '' + patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ + --set-rpath ${libPath} ${x} + ''; + + patchLib = x: '' + patchelf --set-rpath ${libPath} ${x} + ''; + +in +stdenv.mkDerivation rec { + pname = "verifast"; + version = "21.04"; + + src = fetchurl { + url = "https://github.com/verifast/verifast/releases/download/${version}/${pname}-${version}-linux.tar.gz"; + sha256 = "sha256-PlRsf4wFXoM+E+60SbeKzs/RZK0HNVirX47AnI6NeYM="; + }; + + dontConfigure = true; + dontStrip = true; + installPhase = '' + mkdir -p $out/bin + cp -R bin $out/libexec + + ${patchExe "$out/libexec/verifast"} + ${patchExe "$out/libexec/vfide"} + ${patchLib "$out/libexec/libz3.so"} + ln -s $out/libexec/verifast $out/bin/verifast + ln -s $out/libexec/vfide $out/bin/vfide + ''; + + meta = { + description = "Verification for C and Java programs via separation logic"; + homepage = "https://people.cs.kuleuven.be/~bart.jacobs/verifast/"; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + license = lib.licenses.mit; + platforms = [ "x86_64-linux" ]; + maintainers = [ lib.maintainers.thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/verit/default.nix b/nixpkgs/pkgs/applications/science/logic/verit/default.nix new file mode 100644 index 000000000000..6c0d1061dcab --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/verit/default.nix @@ -0,0 +1,31 @@ +{ lib, stdenv, fetchurl, autoreconfHook, gmp, flex, bison }: + +stdenv.mkDerivation { + pname = "veriT"; + version = "2021.06.2"; + + src = fetchurl { + url = "https://verit.loria.fr/download/2021.06.2/verit-2021.06.2-rmx.tar.gz"; + sha256 = "1yjvvxnsix0rhilc81ycx1s85dymq366c6zh1hwwd8qxp7k1zca2"; + }; + + nativeBuildInputs = [ autoreconfHook flex bison ]; + buildInputs = [ gmp ]; + + # --disable-static actually enables static linking here... + dontDisableStatic = true; + + makeFlags = [ "LEX=${flex}/bin/flex" ]; + + preInstall = '' + mkdir -p $out/bin + ''; + + meta = with lib; { + description = "An open, trustable and efficient SMT-solver"; + homepage = "https://verit.loria.fr/"; + license = licenses.bsd3; + platforms = platforms.unix; + maintainers = [ maintainers.gebner ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/why3/default.nix b/nixpkgs/pkgs/applications/science/logic/why3/default.nix new file mode 100644 index 000000000000..1676ca4c2a4f --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/why3/default.nix @@ -0,0 +1,76 @@ +{ callPackage, fetchurl, lib, stdenv +, ocamlPackages, coqPackages, rubber, hevea, emacs +, version ? "1.7.1" +, ideSupport ? true +, wrapGAppsHook +}: + +stdenv.mkDerivation rec { + pname = "why3"; + inherit version; + + src = fetchurl { + url = "https://why3.gitlabpages.inria.fr/releases/${pname}-${version}.tar.gz"; + hash = { + "1.7.1" = "sha256-rG1hcxFhQ2PlE9RTz9ELliDjCuSzLnJ1togRY637cU4="; + "1.6.0" = "sha256-hFvM6kHScaCtcHCc6Vezl9CR7BFbiKPoTEh7kj0ZJxw="; + }."${version}"; + }; + + strictDeps = true; + + nativeBuildInputs = lib.optional ideSupport + wrapGAppsHook + ++ (with ocamlPackages; [ + ocaml findlib menhir + ]) ++ [ + # Coq Support + coqPackages.coq + ]; + + buildInputs = with ocamlPackages; [ + ocamlgraph zarith + # Emacs compilation of why3.el + emacs + # Documentation + rubber hevea + ] ++ lib.optional ideSupport + # GUI + lablgtk3-sourceview3 + ++ [ + # WebIDE + js_of_ocaml js_of_ocaml-ppx + # S-expression output for why3pp + ppx_deriving ppx_sexp_conv ] + ++ + # Coq Support + (with coqPackages; [ coq flocq ]) + ; + + propagatedBuildInputs = with ocamlPackages; [ camlzip menhirLib num re sexplib ]; + + enableParallelBuilding = true; + + configureFlags = [ "--enable-verbose-make" + (lib.enableFeature ideSupport "ide") + ]; + + outputs = [ "out" "dev" ]; + + installTargets = [ "install" "install-lib" ]; + + postInstall = '' + mkdir -p $dev/lib + mv $out/lib/ocaml $dev/lib/ + ''; + + passthru.withProvers = callPackage ./with-provers.nix {}; + + meta = with lib; { + description = "A platform for deductive program verification"; + homepage = "https://why3.lri.fr/"; + license = licenses.lgpl21; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice vbgl ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/why3/with-provers.nix b/nixpkgs/pkgs/applications/science/logic/why3/with-provers.nix new file mode 100644 index 000000000000..95d5b95718dd --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/why3/with-provers.nix @@ -0,0 +1,33 @@ +{ stdenv, makeWrapper, runCommand, why3 }: +provers: +let configAwkScript = runCommand "why3-conf.awk" { inherit provers; } + '' + for p in $provers; do + for b in $p/bin/*; do + BASENAME=$(basename $b) + echo "/^command =/{ gsub(\"$BASENAME\", \"$b\") }" >> $out + done + done + echo '{ print }' >> $out + ''; +in +stdenv.mkDerivation { + pname = "${why3.pname}-with-provers"; + version = why3.version; + + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ why3 ] ++ provers; + + dontUnpack = true; + + buildPhase = '' + mkdir -p $out/share/why3/ + why3 config detect -C $out/share/why3/why3.conf + awk -i inplace -f ${configAwkScript} $out/share/why3/why3.conf + ''; + + installPhase = '' + mkdir -p $out/bin + makeWrapper ${why3}/bin/why3 $out/bin/why3 --add-flags "--config $out/share/why3/why3.conf" + ''; +} diff --git a/nixpkgs/pkgs/applications/science/logic/workcraft/default.nix b/nixpkgs/pkgs/applications/science/logic/workcraft/default.nix new file mode 100644 index 000000000000..89f6e23c79d3 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/workcraft/default.nix @@ -0,0 +1,32 @@ +{ lib, stdenv, fetchurl, jre, makeWrapper }: + +stdenv.mkDerivation rec { + pname = "workcraft"; + version = "3.4.2"; + + src = fetchurl { + url = "https://github.com/workcraft/workcraft/releases/download/v${version}/workcraft-v${version}-linux.tar.gz"; + sha256 = "sha256-+O6fl/+D89L5xrrTaAnBTfw0tFz/CoKLaBa+OHtdnaA="; + }; + + nativeBuildInputs = [ makeWrapper ]; + + dontConfigure = true; + + installPhase = '' + mkdir -p $out/share + cp -r * $out/share + mkdir $out/bin + makeWrapper $out/share/workcraft $out/bin/workcraft \ + --set JAVA_HOME "${jre}" \ + --set _JAVA_OPTIONS '-Dawt.useSystemAAFontSettings=gasp'; + ''; + + meta = { + homepage = "https://workcraft.org/"; + description = "Framework for interpreted graph modeling, verification and synthesis"; + platforms = lib.platforms.linux; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ timor ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/yices/default.nix b/nixpkgs/pkgs/applications/science/logic/yices/default.nix new file mode 100644 index 000000000000..b97245cab476 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/yices/default.nix @@ -0,0 +1,39 @@ +{ lib, stdenv, fetchFromGitHub, cudd, gmp-static, gperf, autoreconfHook, libpoly }: + +stdenv.mkDerivation rec { + pname = "yices"; + # We never want X.Y.${odd} versions as they are moving development tags. + version = "2.6.4"; + + src = fetchFromGitHub { + owner = "SRI-CSL"; + repo = "yices2"; + rev = "Yices-${version}"; + sha256 = "sha256-qdxh86CkKdm65oHcRgaafTG9GUOoIgTDjeWmRofIpNE="; + }; + + patches = [ + # musl has no ldconfig, create symlinks explicitly + ./linux-no-ldconfig.patch + ]; + postPatch = "patchShebangs tests/regress/check.sh"; + + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ cudd gmp-static gperf libpoly ]; + configureFlags = + [ "--with-static-gmp=${gmp-static.out}/lib/libgmp.a" + "--with-static-gmp-include-dir=${gmp-static.dev}/include" + "--enable-mcsat" + ]; + + enableParallelBuilding = true; + doCheck = true; + + meta = with lib; { + description = "A high-performance theorem prover and SMT solver"; + homepage = "https://yices.csl.sri.com"; + license = licenses.gpl3; + platforms = with platforms; linux ++ darwin; + maintainers = with maintainers; [ thoughtpolice ]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/yices/linux-no-ldconfig.patch b/nixpkgs/pkgs/applications/science/logic/yices/linux-no-ldconfig.patch new file mode 100644 index 000000000000..bad3da6ad4a2 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/yices/linux-no-ldconfig.patch @@ -0,0 +1,13 @@ +--- a/Makefile.build ++++ b/Makefile.build +@@ -474,8 +474,9 @@ install-darwin: install-default + install-solaris: install-default + $(LDCONFIG) -n $(DESTDIR)$(libdir) && (cd $(DESTDIR)$(libdir) && $(LN_S) -f libyices.so.$(YICES_VERSION) libyices.so) + ++# avoid ldconfig as it's not present on musl + install-linux install-unix: install-default +- $(LDCONFIG) -n $(DESTDIR)$(libdir) && (cd $(DESTDIR)$(libdir) && $(LN_S) -f libyices.so.$(YICES_VERSION) libyices.so) ++ (cd $(DESTDIR)$(libdir) && $(LN_S) -f libyices.so.$(YICES_VERSION) libyices.so.$(MAJOR).$(MINOR) && $(LN_S) -f libyices.so.$(MAJOR).$(MINOR) libyices.so) + + # on FreeBSD: the library file is libyices.so.X.Y and ldconfig does not take -n + # TODO: fix this. We must also create a symbolic link: libyices.so.X in libdir diff --git a/nixpkgs/pkgs/applications/science/logic/z3/default.nix b/nixpkgs/pkgs/applications/science/logic/z3/default.nix new file mode 100644 index 000000000000..b247599a0813 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/z3/default.nix @@ -0,0 +1,108 @@ +{ lib +, stdenv +, fetchFromGitHub +, python +, fixDarwinDylibNames +, javaBindings ? false +, ocamlBindings ? false +, pythonBindings ? true +, jdk ? null +, ocaml ? null +, findlib ? null +, zarith ? null +, writeScript +}: + +assert javaBindings -> jdk != null; +assert ocamlBindings -> ocaml != null && findlib != null && zarith != null; + +with lib; + +let common = { version, sha256, patches ? [ ], tag ? "z3" }: + stdenv.mkDerivation rec { + pname = "z3"; + inherit version sha256 patches; + src = fetchFromGitHub { + owner = "Z3Prover"; + repo = "z3"; + rev = "${tag}-${version}"; + sha256 = sha256; + }; + + strictDeps = true; + + nativeBuildInputs = [ python ] + ++ optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames + ++ optional javaBindings jdk + ++ optionals ocamlBindings [ ocaml findlib ] + ; + propagatedBuildInputs = [ python.pkgs.setuptools ] + ++ optionals ocamlBindings [ zarith ]; + enableParallelBuilding = true; + + postPatch = optionalString ocamlBindings '' + export OCAMLFIND_DESTDIR=$ocaml/lib/ocaml/${ocaml.version}/site-lib + mkdir -p $OCAMLFIND_DESTDIR/stublibs + ''; + + configurePhase = concatStringsSep " " + ( + [ "${python.pythonOnBuildForHost.interpreter} scripts/mk_make.py --prefix=$out" ] + ++ optional javaBindings "--java" + ++ optional ocamlBindings "--ml" + ++ optional pythonBindings "--python --pypkgdir=$out/${python.sitePackages}" + ) + "\n" + "cd build"; + + doCheck = true; + checkPhase = '' + make test + ./test-z3 -a + ''; + + postInstall = '' + mkdir -p $dev $lib + mv $out/lib $lib/lib + mv $out/include $dev/include + '' + optionalString pythonBindings '' + mkdir -p $python/lib + mv $lib/lib/python* $python/lib/ + ln -sf $lib/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary} $python/${python.sitePackages}/z3/lib/libz3${stdenv.hostPlatform.extensions.sharedLibrary} + '' + optionalString javaBindings '' + mkdir -p $java/share/java + mv com.microsoft.z3.jar $java/share/java + moveToOutput "lib/libz3java.${stdenv.hostPlatform.extensions.sharedLibrary}" "$java" + ''; + + outputs = [ "out" "lib" "dev" "python" ] + ++ optional javaBindings "java" + ++ optional ocamlBindings "ocaml"; + + meta = with lib; { + description = "A high-performance theorem prover and SMT solver"; + homepage = "https://github.com/Z3Prover/z3"; + changelog = "https://github.com/Z3Prover/z3/releases/tag/z3-${version}"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice ttuegel ]; + }; + }; +in +{ + z3_4_12 = common { + version = "4.12.5"; + sha256 = "sha256-Qj9w5s02OSMQ2qA7HG7xNqQGaUacA1d4zbOHynq5k+A="; + }; + z3_4_11 = common { + version = "4.11.2"; + sha256 = "sha256-OO0wtCvSKwGxnKvu+AfXe4mEzv4nofa7A00BjX+KVjc="; + }; + z3_4_8 = common { + version = "4.8.17"; + sha256 = "sha256-BSwjgOU9EgCcm18Zx0P9mnoPc9ZeYsJwEu0ffnACa+8="; + }; + z3_4_8_5 = common { + tag = "Z3"; + version = "4.8.5"; + sha256 = "sha256-ytG5O9HczbIVJAiIGZfUXC/MuYH7d7yLApaeTRlKXoc="; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/z3/tptp.nix b/nixpkgs/pkgs/applications/science/logic/z3/tptp.nix new file mode 100644 index 000000000000..15f6770404ef --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/z3/tptp.nix @@ -0,0 +1,30 @@ +{lib, stdenv, z3, cmake}: +stdenv.mkDerivation rec { + pname = "z3-tptp"; + version = z3.version; + + src = z3.src; + + sourceRoot = "${src.name}/examples/tptp"; + + nativeBuildInputs = [cmake]; + buildInputs = [z3]; + + preConfigure = '' + echo 'set(Z3_LIBRARIES "-lz3")' >> CMakeLists.new + cat CMakeLists.txt | grep -E 'add_executable|project|link_libraries' >> CMakeLists.new + mv CMakeLists.new CMakeLists.txt + ''; + + installPhase = '' + mkdir -p "$out/bin" + cp "z3_tptp5" "$out/bin/" + ln -s "z3_tptp5" "$out/bin/z3-tptp" + ''; + + meta = { + inherit (z3.meta) license homepage platforms; + description = "TPTP wrapper for Z3 prover"; + maintainers = [lib.maintainers.raskin]; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/zchaff/default.nix b/nixpkgs/pkgs/applications/science/logic/zchaff/default.nix new file mode 100644 index 000000000000..57f673042dc8 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/zchaff/default.nix @@ -0,0 +1,31 @@ +{ lib, clangStdenv, fetchzip }: + +clangStdenv.mkDerivation rec { + pname = "zchaff"; + version = "2007.3.12"; + + src = fetchzip { + url = "https://www.princeton.edu/~chaff/zchaff/zchaff.64bit.${version}.zip"; + sha256 = "sha256-88fAtJb7o+Qv2GohTdmquxMEq4oCbiKbqLFmS7zs1Ak="; + }; + + patches = [ ./sat_solver.patch ]; + postPatch = '' + substituteInPlace zchaff_solver.cpp --replace "// #define VERIFY_ON" "#define VERIFY_ON" + ''; + + makeFlags = [ "CC=${clangStdenv.cc.targetPrefix}c++" ]; + installPhase= '' + runHook preInstall + install -Dm755 -t $out/bin zchaff + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://www.princeton.edu/~chaff/zchaf"; + description = "Accelerated SAT Solver from Princeton"; + license = licenses.mit; + maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; + }; +} diff --git a/nixpkgs/pkgs/applications/science/logic/zchaff/sat_solver.patch b/nixpkgs/pkgs/applications/science/logic/zchaff/sat_solver.patch new file mode 100644 index 000000000000..2a84ba18de24 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/logic/zchaff/sat_solver.patch @@ -0,0 +1,12 @@ +diff --git a/sat_solver.cpp b/sat_solver.cpp +index e191881..07c0926 100644 +--- a/sat_solver.cpp ++++ b/sat_solver2.cpp +@@ -43,6 +43,7 @@ + #include <vector> + #include <dirent.h> + #include "SAT.h" ++#include <cstring> + + using namespace std; + |