2 files changed, 73 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/chemistry/molden/default.nix b/nixpkgs/pkgs/applications/science/chemistry/molden/default.nix
new file mode 100644
index 000000000000..5e5df85a5279
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/chemistry/molden/default.nix
@@ -0,0 +1,44 @@
+{ stdenv, fetchurl, which, gfortran, libGLU, xorg } :
+
+stdenv.mkDerivation rec {
+  version = "6.2";
+  pname = "molden";
+
+  src = fetchurl {
+    url = "ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden${version}.tar.gz";
+    sha256 = "01m5p7v5pz1fi77var50sp1bzlvdckwr6kn4wanvic2jmvgp9q5n";
+  };
+
+  nativeBuildInputs = [ which ];
+  buildInputs = [ gfortran libGLU xorg.libX11 xorg.libXmu ];
+
+  patches = [ ./dont_register_file_types.patch ];
+
+  postPatch = ''
+     substituteInPlace ./makefile --replace '-L/usr/X11R6/lib'  "" \
+                                  --replace '-I/usr/X11R6/include' "" \
+                                  --replace '/usr/local/' $out/ \
+                                  --replace 'sudo' "" \
+				                          --replace '-C surf depend' '-C surf'
+     sed -in '/^# DO NOT DELETE THIS LINE/q;' surf/Makefile
+  '';
+
+  preInstall = ''
+     mkdir -p $out/bin
+  '';
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+     description = "Display and manipulate molecular structures";
+     homepage = "http://www.cmbi.ru.nl/molden/";
+     license = {
+       fullName = "Free for academic/non-profit use";
+       url = "http://www.cmbi.ru.nl/molden/CopyRight.html";
+       free = false;
+     };
+     platforms = platforms.linux;
+     maintainers = with maintainers; [ markuskowa ];
+  };
+}
+
diff --git a/nixpkgs/pkgs/applications/science/chemistry/molden/dont_register_file_types.patch b/nixpkgs/pkgs/applications/science/chemistry/molden/dont_register_file_types.patch
new file mode 100644
index 000000000000..75ce593ed29a
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/chemistry/molden/dont_register_file_types.patch
@@ -0,0 +1,29 @@
+diff --git a/makefile b/makefile
+index 58a9e74..64615b6 100644
+--- a/makefile
++++ b/makefile
+@@ -32,8 +32,6 @@ os :=
+ ifeq ($(uname), Linux)
+  os := $(shell head -n 1 /etc/issue | cut -d" " -f1)
+  ifeq ($(os), Ubuntu)
+-    EXTEN = exten
+-    EXTENZ = exten2
+     LIBSG = -L/usr/X11R6/lib -lGLU -lGL -lX11 -lm
+  endif
+  ifeq ($(os), Debian)
+@@ -278,7 +276,7 @@ LIBSOGL = -lglut -lGLU -lGL -lXmu -lX11 -lm
+ #
+ #LIBSG = -L/usr/X11R6/lib -Wl,-framework -Wl,GLUT -Wl,-framework -Wl,OpenGL -Wl,-framework -Wl,Cocoa -lGLU -lGL -lXmu -lX11 -lm
+ 
+-all:	molden gmolden ambfor/ambfor ambfor/ambmd surf/surf $(EXTEN)
++all:	molden gmolden ambfor/ambfor ambfor/ambmd surf/surf
+ xwin.o:	xwin.c rots.h
+ xwingl.o:	xwin.c rots.h
+ 
+@@ -344,5 +342,5 @@ exten:
+ exten2:
+ 	./register_extension.sh /usr/local/bin
+ 
+-install:	$(EXTENZ)
++install:
+ 	sudo install -t /usr/local/bin -m 755 molden gmolden ambfor/ambfor ambfor/ambmd surf/surf