1 files changed, 53 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/chemistry/jmol/default.nix b/nixpkgs/pkgs/applications/science/chemistry/jmol/default.nix
new file mode 100644
index 000000000000..7f5eb7b76e8c
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/chemistry/jmol/default.nix
@@ -0,0 +1,53 @@
+{ stdenv
+, lib
+, fetchurl
+, unzip
+, makeDesktopItem
+, jre
+}:
+
+let
+  desktopItem = makeDesktopItem {
+    name = "jmol";
+    exec = "jmol";
+    desktopName = "JMol";
+    genericName = "Molecular Modeler";
+    mimeType = "chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;";
+    categories = "Graphics;Education;Science;Chemistry;";
+  };
+in
+stdenv.mkDerivation rec {
+  version = "14.29.31";
+  pname = "jmol";
+
+  src = let
+    baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
+  in fetchurl {
+    url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
+    sha256 = "15mxifm1h145bhyrm9rvmipvg048q8rgwg1sn6jmfgrimy0cjraj";
+  };
+
+  patchPhase = ''
+    sed -i -e "4s:.*:command=${jre}/bin/java:" -e "10s:.*:jarpath=$out/share/jmol/Jmol.jar:" -e "11,21d" jmol
+  '';
+
+  installPhase = ''
+    mkdir -p "$out/share/jmol" "$out/bin"
+
+    ${unzip}/bin/unzip jsmol.zip -d "$out/share/"
+
+    cp *.jar jmol.sh "$out/share/jmol"
+    cp -r ${desktopItem}/share/applications $out/share
+    cp jmol $out/bin
+  '';
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+     description = "A Java 3D viewer for chemical structures";
+     homepage = https://sourceforge.net/projects/jmol;
+     license = licenses.lgpl2;
+     platforms = platforms.all;
+     maintainers = with maintainers; [ timokau mounium ];
+  };
+}