diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/sumatools/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/sumatools/default.nix | 68 |
1 files changed, 68 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/sumatools/default.nix b/nixpkgs/pkgs/applications/science/biology/sumatools/default.nix new file mode 100644 index 000000000000..2a30f33172b9 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/sumatools/default.nix @@ -0,0 +1,68 @@ +{ lib, gccStdenv, fetchFromGitLab, zlib }: + +let + stdenv = gccStdenv; + meta = with lib; { + description = "Fast and exact comparison and clustering of sequences"; + homepage = "https://metabarcoding.org/sumatra"; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.unix; + }; + +in rec { + + # Suma library + sumalibs = stdenv.mkDerivation rec { + version = "1.0.34"; + pname = "sumalibs"; + src = fetchFromGitLab { + domain = "git.metabarcoding.org"; + owner = "obitools"; + repo = pname; + rev = "sumalib_v${version}"; + sha256 = "0hwkrxzfz7m5wdjvmrhkjg8kis378iaqr5n4nhdhkwwhn8x1jn5a"; + }; + makeFlags = [ "PREFIX=$(out)" ]; + inherit meta; + }; + + # Sumatra + sumatra = stdenv.mkDerivation rec { + version = "1.0.34"; + pname = "sumatra"; + src = fetchFromGitLab { + domain = "git.metabarcoding.org"; + owner = "obitools"; + repo = pname; + rev = "${pname}_v${version}"; + sha256 = "1bbpbdkshdc3xffqnr1qfy8qk64ldsmdc3s8mrcrlx132rgbi5f6"; + }; + buildInputs = [ sumalibs zlib ]; + makeFlags = [ + "LIBSUMA=${sumalibs}/lib/libsuma.a" + "LIBSUMAPATH=-L${sumalibs}" + "PREFIX=$(out)" + ]; + inherit meta; + }; + + # Sumaclust + sumaclust = stdenv.mkDerivation rec { + version = "1.0.34"; + pname = "sumaclust"; + src = fetchFromGitLab { + domain = "git.metabarcoding.org"; + owner = "obitools"; + repo = pname; + rev = "${pname}_v${version}"; + sha256 = "0x8yi3k3jxhmv2krp4rcjlj2f9zg0qrk7gx4kpclf9c3yxgsgrds"; + }; + buildInputs = [ sumalibs ]; + makeFlags = [ + "LIBSUMA=${sumalibs}/lib/libsuma.a" + "LIBSUMAPATH=-L${sumalibs}" + "PREFIX=$(out)" + ]; + inherit meta; + }; +} |