1 files changed, 41 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/subread/default.nix b/nixpkgs/pkgs/applications/science/biology/subread/default.nix
new file mode 100644
index 000000000000..62ea61af9192
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/subread/default.nix
@@ -0,0 +1,41 @@
+{ lib
+, stdenv
+, fetchurl
+, zlib
+}:
+
+stdenv.mkDerivation rec {
+  pname = "subread";
+  version = "2.0.6";
+
+  src = fetchurl {
+    url = "mirror://sourceforge/subread/subread-${version}/subread-${version}-source.tar.gz";
+    sha256 = "sha256-8P3aa5hjTSlGAolIwiAlPhCg8nx/pfJJE7ZbOsbLsEU=";
+  };
+
+  buildInputs = [
+    zlib
+  ];
+
+  configurePhase = ''
+    cd src
+    cp Makefile.${if stdenv.isLinux then "Linux" else "MacOS"} Makefile
+  '';
+
+  makeFlags = [ "CC_EXEC=cc" ];
+
+  installPhase = ''
+    mkdir $out
+    cp -r ../bin $out
+  '';
+
+  meta = with lib; {
+    broken = stdenv.isDarwin;
+    description = "High-performance read alignment, quantification and mutation discovery";
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = [ "x86_64-darwin" "x86_64-linux" ];
+    homepage = "https://subread.sourceforge.net/";
+  };
+
+}