1 files changed, 40 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/raxml/default.nix b/nixpkgs/pkgs/applications/science/biology/raxml/default.nix
new file mode 100644
index 000000000000..0cc20b063503
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/raxml/default.nix
@@ -0,0 +1,40 @@
+{ lib, stdenv
+, fetchFromGitHub
+, useMpi ? false
+, mpi
+}:
+
+stdenv.mkDerivation rec {
+  pname = "RAxML${lib.optionalString useMpi "-mpi"}";
+  version = "8.2.13";
+
+  src = fetchFromGitHub {
+    owner = "stamatak";
+    repo = "standard-RAxML";
+    rev = "v${version}";
+    sha256 = "sha256-w+Eqi0GhVira1H6ZnMNeZGBMzDjiGT7JSFpQEVXONyk=";
+  };
+
+  buildInputs = lib.optionals useMpi [ mpi ];
+
+  # TODO darwin, AVX and AVX2 makefile targets
+  buildPhase = if useMpi then ''
+      make -f Makefile.MPI.gcc
+    '' else ''
+      make -f Makefile.SSE3.PTHREADS.gcc
+    '';
+
+  installPhase = if useMpi then ''
+    mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
+  '' else ''
+    mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
+  '';
+
+  meta = with lib; {
+    description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
+    license = licenses.gpl3;
+    homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
+    maintainers = [ maintainers.unode ];
+    platforms = [ "i686-linux" "x86_64-linux" ];
+  };
+}