diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/mrbayes/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/mrbayes/default.nix | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/mrbayes/default.nix b/nixpkgs/pkgs/applications/science/biology/mrbayes/default.nix new file mode 100644 index 000000000000..1dd92af58eb1 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/mrbayes/default.nix @@ -0,0 +1,29 @@ +{stdenv, fetchurl, readline}: + +stdenv.mkDerivation rec { + # FIXME: replace Makefile so we can build MPI & MAC support + + name = "mrbayes-3.1.2"; + src = fetchurl { + url = "mirror://sourceforge/mrbayes/${name}.tar.gz"; + sha256 = "1x7j8ca5wjrqrxmcpvd375ydm3s2pbkzykv8xfhg1jc037g560n6"; + }; + builder = ./builder.sh; + buildInputs = [readline]; + + meta = { + description = "Bayesian Inference of Phylogeny"; + longDescription = '' + Bayesian inference of phylogeny is based upon a + quantity called the posterior probability distribution of trees, which is + the probability of a tree conditioned on the observations. The conditioning + is accomplished using Bayes's theorem. The posterior probability + distribution of trees is impossible to calculate analytically; instead, + MrBayes uses a simulation technique called Markov chain Monte Carlo (or + MCMC) to approximate the posterior probabilities of trees. + ''; + license = "GPL2"; + homepage = http://mrbayes.csit.fsu.edu/; + platforms = stdenv.lib.platforms.linux; + }; +} |