1 files changed, 35 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/mni_autoreg/default.nix b/nixpkgs/pkgs/applications/science/biology/mni_autoreg/default.nix
new file mode 100644
index 000000000000..29ab02ee3139
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/mni_autoreg/default.nix
@@ -0,0 +1,35 @@
+{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper, perlPackages, libminc }:
+
+stdenv.mkDerivation rec {
+  pname = "mni_autoreg";
+  version = "unstable-2022-05-20";
+
+  src = fetchFromGitHub {
+    owner = "BIC-MNI";
+    repo = pname;
+    rev = "be7bd25bf7776974e0f2c1d90b6e7f8ccc0c8874";
+    sha256 = "sGMZbCrdV6yAOgGiqvBFOUr6pGlTCqwy8yNrPxMoKco=";
+  };
+
+  nativeBuildInputs = [ cmake makeWrapper ];
+  buildInputs = [ libminc ];
+  propagatedBuildInputs = with perlPackages; [ perl GetoptTabular MNI-Perllib ];
+
+  cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake" ];
+  # testing broken: './minc_wrapper: Permission denied' from Testing/ellipse0.mnc
+
+  postFixup = ''
+    for prog in autocrop mritoself mritotal xfmtool; do
+      echo $out/bin/$prog
+      wrapProgram $out/bin/$prog --prefix PERL5LIB : $PERL5LIB;
+    done
+  '';
+
+  meta = with lib; {
+    homepage = "https://github.com/BIC-MNI/mni_autoreg";
+    description = "Tools for automated registration using the MINC image format";
+    maintainers = with maintainers; [ bcdarwin ];
+    platforms = platforms.unix;
+    license = licenses.free;
+  };
+}