1 files changed, 36 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/mni_autoreg/default.nix b/nixpkgs/pkgs/applications/science/biology/mni_autoreg/default.nix
new file mode 100644
index 000000000000..5901b696d642
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/mni_autoreg/default.nix
@@ -0,0 +1,36 @@
+{ stdenv, fetchFromGitHub, cmake, makeWrapper, perlPackages, libminc }:
+
+stdenv.mkDerivation rec {
+  pname = "mni_autoreg";
+  name  = "${pname}-2017-09-22";
+
+  src = fetchFromGitHub {
+    owner = "BIC-MNI";
+    repo = pname;
+    rev = "ab99e29987dc029737785baebf24896ec37a2d76";
+    sha256 = "0axl069nv57vmb2wvqq7s9v3bfxwspzmk37bxm4973ai1irgppjq";
+  };
+
+  nativeBuildInputs = [ cmake makeWrapper ];
+  buildInputs = [ libminc ];
+  propagatedBuildInputs = with perlPackages; [ perl GetoptTabular MNI-Perllib ];
+
+  cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" "-DBUILD_TESTING=FALSE" ];
+  # testing broken: './minc_wrapper: Permission denied' from Testing/ellipse0.mnc
+
+  postFixup = ''
+    for prog in autocrop mritoself mritotal xfmtool; do
+      echo $out/bin/$prog
+      wrapProgram $out/bin/$prog --prefix PERL5LIB : $PERL5LIB;
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/BIC-MNI/mni_autoreg;
+    description = "Tools for automated registration using the MINC image format";
+    maintainers = with maintainers; [ bcdarwin ];
+    platforms = platforms.unix;
+    license = licenses.free;
+  };
+}
+