1 files changed, 33 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/minimap2/default.nix b/nixpkgs/pkgs/applications/science/biology/minimap2/default.nix
new file mode 100644
index 000000000000..eeb31dee0538
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/minimap2/default.nix
@@ -0,0 +1,33 @@
+{ lib, stdenv, fetchFromGitHub, zlib }:
+
+stdenv.mkDerivation rec {
+  pname = "minimap2";
+  version = "2.27";
+
+  src = fetchFromGitHub {
+    repo = pname;
+    owner = "lh3";
+    rev = "v${version}";
+    sha256 = "sha256-F6IJrYD2dk+5bKKVIahLiNnD/Hd/CjNQQd9zz0Gkans=";
+  };
+
+  buildInputs = [ zlib ];
+
+  makeFlags = lib.optionals stdenv.isAarch64 [ "arm_neon=1" "aarch64=1" ];
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp minimap2 $out/bin
+    mkdir -p $out/share/man/man1
+    cp minimap2.1 $out/share/man/man1
+  '';
+
+  meta = with lib; {
+    description = "A versatile pairwise aligner for genomic and spliced nucleotide sequences";
+    mainProgram = "minimap2";
+    homepage = "https://lh3.github.io/minimap2";
+    license = licenses.mit;
+    platforms = platforms.all;
+    maintainers = [ maintainers.arcadio ];
+  };
+}