1 files changed, 34 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/minia/default.nix b/nixpkgs/pkgs/applications/science/biology/minia/default.nix
new file mode 100644
index 000000000000..3665639a2cd9
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/minia/default.nix
@@ -0,0 +1,34 @@
+{ lib, stdenv, fetchFromGitHub, cmake, hdf5, boost }:
+
+stdenv.mkDerivation rec {
+  pname = "minia";
+  version = "3.2.1";
+
+  src = fetchFromGitHub {
+    owner = "GATB";
+    repo = "minia";
+    rev = "v${version}";
+    sha256 = "0bmfrywixaaql898l0ixsfkhxjf2hb08ssnqzlzacfizxdp46siq";
+    fetchSubmodules = true;
+  };
+
+  patches = [ ./no-bundle.patch ];
+
+  env.NIX_CFLAGS_COMPILE = toString [ "-Wformat" ];
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ hdf5 boost ];
+
+  prePatch = ''
+    rm -rf thirdparty/gatb-core/gatb-core/thirdparty/{hdf5,boost}
+  '';
+
+  meta = with lib; {
+    description = "Short read genome assembler";
+    mainProgram = "minia";
+    homepage = "https://github.com/GATB/minia";
+    license = licenses.agpl3Plus;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = [ "x86_64-linux" ];
+  };
+}