diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/igv/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/igv/default.nix | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/igv/default.nix b/nixpkgs/pkgs/applications/science/biology/igv/default.nix new file mode 100644 index 000000000000..19ba508d758e --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/igv/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchurl, unzip, jre }: + +stdenv.mkDerivation rec { + name = "igv-${version}"; + version = "2.4.17"; + + src = fetchurl { + url = "https://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_${version}.zip"; + sha256 = "02zl0r1yhyllh000cad6pjk0ic0xm6l05jzkglsf8wdz17nh15nr"; + }; + + buildInputs = [ unzip jre ]; + + installPhase = '' + mkdir -pv $out/{share,bin} + cp -Rv * $out/share/ + + sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh + sed -i 's#java#${jre}/bin/java#g' $out/share/igv.sh + + ln -s $out/share/igv.sh $out/bin/igv + + chmod +x $out/bin/igv + ''; + + meta = with stdenv.lib; { + homepage = https://www.broadinstitute.org/igv/; + description = "A visualization tool for interactive exploration of genomic datasets"; + license = licenses.lgpl21; + platforms = platforms.unix; + maintainers = [ maintainers.mimadrid ]; + }; +} |