diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/ecopcr/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/ecopcr/default.nix | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/ecopcr/default.nix b/nixpkgs/pkgs/applications/science/biology/ecopcr/default.nix new file mode 100644 index 000000000000..9e1b16ff9449 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/ecopcr/default.nix @@ -0,0 +1,37 @@ +{ stdenv, fetchurl, gcc, zlib, python27 }: + +stdenv.mkDerivation rec { + name = "ecopcr-0.8.0"; + + src = fetchurl { + url = "https://git.metabarcoding.org/obitools/ecopcr/uploads/6f37991b325c8c171df7e79e6ae8d080/${name}.tar.gz"; + sha256 = "10c58hj25z78jh0g3zcbx4890yd2qrvaaanyx8mn9p49mmyf5pk6"; + }; + + sourceRoot = "ecoPCR/src"; + + buildInputs = [ gcc python27 zlib ]; + + installPhase = '' + mkdir -p $out/bin + cp -v ecoPCR $out/bin + cp -v ecogrep $out/bin + cp -v ecofind $out/bin + cp -v ../tools/ecoPCRFormat.py $out/bin/ecoPCRFormat + chmod a+x $out/bin/ecoPCRFormat + ''; + + meta = with stdenv.lib; { + description = "Electronic PCR software tool"; + longDescription = '' + ecoPCR is an electronic PCR software developed by the LECA. It + helps you estimate Barcode primers quality. In conjunction with + OBITools, you can postprocess ecoPCR output to compute barcode + coverage and barcode specificity. New barcode primers can be + developed using the ecoPrimers software. + ''; + homepage = https://git.metabarcoding.org/obitools/ecopcr/wikis/home; + license = licenses.cecill20; + maintainers = [ maintainers.metabar ]; + }; +} |