1 files changed, 41 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/diamond/default.nix b/nixpkgs/pkgs/applications/science/biology/diamond/default.nix
new file mode 100644
index 000000000000..854e91b2fcbb
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+++ b/nixpkgs/pkgs/applications/science/biology/diamond/default.nix
@@ -0,0 +1,41 @@
+{ stdenv, fetchurl, cmake, zlib }:
+
+stdenv.mkDerivation rec {
+  name = "diamond-0.8.36";
+
+  src = fetchurl {
+    url = "https://github.com/bbuchfink/diamond/archive/v0.8.36.tar.gz";
+    sha256 = "092smzzjcg51n3x4h84k52ijpz9m40ri838j9k2i463ribc3c8rh";
+  };
+
+  patches = [
+    ./diamond-0.8.36-no-warning.patch
+  ];
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ zlib ];
+
+  meta = with stdenv.lib; {
+    description = "Accelerated BLAST compatible local sequence aligner";
+    longDescription = ''
+      A sequence aligner for protein and translated DNA
+      searches and functions as a drop-in replacement for the NCBI BLAST
+      software tools. It is suitable for protein-protein search as well as
+      DNA-protein search on short reads and longer sequences including contigs
+      and assemblies, providing a speedup of BLAST ranging up to x20,000.
+
+      DIAMOND is developed by Benjamin Buchfink. Feel free to contact him for support (Email Twitter).
+
+      If you use DIAMOND in published research, please cite
+      B. Buchfink, Xie C., D. Huson,
+      "Fast and sensitive protein alignment using DIAMOND",
+      Nature Methods 12, 59-60 (2015).
+        '';
+    homepage = https://github.com/bbuchfink/diamond;
+    license = {
+      fullName = "University of Tuebingen, Benjamin Buchfink";
+      url = https://raw.githubusercontent.com/bbuchfink/diamond/master/src/COPYING;
+    };
+    maintainers = [ maintainers.metabar ];
+  };
+}