1 files changed, 26 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/bowtie2/default.nix b/nixpkgs/pkgs/applications/science/biology/bowtie2/default.nix
new file mode 100644
index 000000000000..818d0fe14ba2
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/bowtie2/default.nix
@@ -0,0 +1,26 @@
+{ lib, stdenv, fetchFromGitHub, cmake, tbb, zlib, python3, perl }:
+
+stdenv.mkDerivation rec {
+  pname = "bowtie2";
+  version = "2.4.4";
+
+  src = fetchFromGitHub {
+    owner = "BenLangmead";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "sha256-2B6w6c/qztyBb1jNA0zg+udQm41ouT1DyB6Ygpi5nC8=";
+  };
+
+  nativeBuildInputs = [ cmake ];
+
+  buildInputs = [ tbb zlib python3 perl ];
+
+  meta = with lib; {
+    description = "An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences";
+    license = licenses.gpl3;
+    homepage = "http://bowtie-bio.sf.net/bowtie2";
+    maintainers = with maintainers; [ rybern ];
+    platforms = platforms.all;
+    broken = stdenv.isAarch64; # only x86 is supported
+  };
+}