1 files changed, 27 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/bowtie2/default.nix b/nixpkgs/pkgs/applications/science/biology/bowtie2/default.nix
new file mode 100644
index 000000000000..e97b5d1a3f4f
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/bowtie2/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitHub, zlib, tbb, python, perl }:
+
+stdenv.mkDerivation rec {
+  pname = "bowtie2";
+  version = "2.3.4.3";
+  name = "${pname}-${version}";
+
+  src = fetchFromGitHub {
+    owner = "BenLangmead";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1zl3cf327y2p7p03cavymbh7b00djc7lncfaqih33n96iy9q8ibp";
+  };
+
+  buildInputs = [ zlib tbb python perl ];
+
+  installFlags = [ "prefix=$(out)" ];
+
+  meta = with stdenv.lib; {
+    description = "An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences";
+    license = licenses.gpl3;
+    homepage = http://bowtie-bio.sf.net/bowtie2;
+    maintainers = with maintainers; [ rybern ];
+    platforms = platforms.all;
+    broken = stdenv.isAarch64;
+  };
+}