diff options
704 files changed, 14281 insertions, 10132 deletions
diff --git a/.dir-locals.el b/.dir-locals.el new file mode 100644 index 000000000000..a53c8aa6db54 --- /dev/null +++ b/.dir-locals.el @@ -0,0 +1,8 @@ +;;; Directory Local Variables +;;; For more information see (info "(emacs) Directory Variables") + +((nil + (bug-reference-bug-regexp . "\\(\\(?:[Ii]ssue \\|[Ff]ixe[ds] \\|[Rr]esolve[ds]? \\|[Cc]lose[ds]? \\|[Pp]\\(?:ull [Rr]equest\\|[Rr]\\) \\|(\\)#\\([0-9]+\\))?\\)") + (bug-reference-url-format . "https://github.com/NixOS/nixpkgs/issues/%s")) + (nix-mode + (tab-width . 2))) diff --git a/doc/cross-compilation.xml b/doc/cross-compilation.xml index 3b433fdcc1d2..a7b43aeec23f 100644 --- a/doc/cross-compilation.xml +++ b/doc/cross-compilation.xml @@ -305,7 +305,7 @@ </section> <section> - <title>Cross packagaing cookbook</title> + <title>Cross packaging cookbook</title> <para> Some frequently problems when packaging for cross compilation are good to diff --git a/doc/functions.xml b/doc/functions.xml index 746ef7131f86..c23f6aa25967 100644 --- a/doc/functions.xml +++ b/doc/functions.xml @@ -521,7 +521,7 @@ merge:"diff3" <callout arearefs='ex-dockerTools-buildImage-2'> <para> <varname>tag</varname> specifies the tag of the resulting image. By - default it's <literal>latest</literal>. + default it's <literal>null</literal>, which indicates that the nix output hash will be used as tag. </para> </callout> <callout arearefs='ex-dockerTools-buildImage-3'> diff --git a/doc/languages-frameworks/python.section.md b/doc/languages-frameworks/python.section.md index c4a5bb0612c9..298920ce166b 100644 --- a/doc/languages-frameworks/python.section.md +++ b/doc/languages-frameworks/python.section.md @@ -436,7 +436,7 @@ Let's split the package definition from the environment definition. We first create a function that builds `toolz` in `~/path/to/toolz/release.nix` ```nix -{ pkgs, buildPythonPackage }: +{ lib, pkgs, buildPythonPackage }: buildPythonPackage rec { pname = "toolz"; @@ -447,7 +447,7 @@ buildPythonPackage rec { sha256 = "43c2c9e5e7a16b6c88ba3088a9bfc82f7db8e13378be7c78d6c14a5f8ed05afd"; }; - meta = { + meta = with lib; { homepage = "http://github.com/pytoolz/toolz/"; description = "List processing tools and functional utilities"; license = licenses.bsd3; @@ -1029,7 +1029,7 @@ To alter a python package using overlays, you would use the following approach: ```nix self: super: -rec { +{ python = super.python.override { packageOverrides = python-self: python-super: { bepasty-server = python-super.bepasty-server.overrideAttrs ( oldAttrs: { @@ -1041,7 +1041,7 @@ rec { }); }; }; - pythonPackages = python.pkgs; + pythonPackages = self.python.pkgs; } ``` diff --git a/lib/attrsets.nix b/lib/attrsets.nix index 19218cfe8ecb..dca39cf79ffa 100644 --- a/lib/attrsets.nix +++ b/lib/attrsets.nix @@ -195,8 +195,9 @@ rec { { x = "foo"; y = "bar"; } => { x = "x-foo"; y = "y-bar"; } */ - mapAttrs = f: set: - listToAttrs (map (attr: { name = attr; value = f attr set.${attr}; }) (attrNames set)); + mapAttrs = builtins.mapAttrs or + (f: set: + listToAttrs (map (attr: { name = attr; value = f attr set.${attr}; }) (attrNames set))); /* Like `mapAttrs', but allows the name of each attribute to be diff --git a/lib/generators.nix b/lib/generators.nix index 073bb6982e14..aa6759087031 100644 --- a/lib/generators.nix +++ b/lib/generators.nix @@ -177,13 +177,15 @@ rec { # PLIST handling toPlist = {}: v: let - expr = ind: x: with builtins; - if isNull x then "" else - if isBool x then bool ind x else - if isInt x then int ind x else + isFloat = builtins.isFloat or (x: false); + expr = ind: x: with builtins; + if isNull x then "" else + if isBool x then bool ind x else + if isInt x then int ind x else if isString x then str ind x else - if isList x then list ind x else - if isAttrs x then attrs ind x else + if isList x then list ind x else + if isAttrs x then attrs ind x else + if isFloat x then float ind x else abort "generators.toPlist: should never happen (v = ${v})"; literal = ind: x: ind + x; @@ -192,6 +194,7 @@ rec { int = ind: x: literal ind "<integer>${toString x}</integer>"; str = ind: x: literal ind "<string>${x}</string>"; key = ind: x: literal ind "<key>${x}</key>"; + float = ind: x: literal ind "<real>${toString x}</real>"; indent = ind: expr "\t${ind}"; diff --git a/lib/lists.nix b/lib/lists.nix index 194e1c200ec9..231c2317c0c4 100644 --- a/lib/lists.nix +++ b/lib/lists.nix @@ -101,7 +101,7 @@ rec { concatMap (x: [x] ++ ["z"]) ["a" "b"] => [ "a" "z" "b" "z" ] */ - concatMap = f: list: concatLists (map f list); + concatMap = builtins.concatMap or (f: list: concatLists (map f list)); /* Flatten the argument into a single list; that is, nested lists are spliced into the top-level lists. diff --git a/lib/trivial.nix b/lib/trivial.nix index 0bcefcbc28de..fac0718a9e73 100644 --- a/lib/trivial.nix +++ b/lib/trivial.nix @@ -102,7 +102,7 @@ rec { # Pull in some builtins not included elsewhere. inherit (builtins) pathExists readFile isBool - isInt add sub lessThan + isInt isFloat add sub lessThan seq deepSeq genericClosure; inherit (lib.strings) fileContents; diff --git a/lib/types.nix b/lib/types.nix index 5aa09d33e9b3..cf6f2aa46e40 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -167,6 +167,13 @@ rec { # s32 = sign 32 4294967296; }; + float = mkOptionType rec { + name = "float"; + description = "floating point number"; + check = isFloat; + merge = mergeOneOption; + }; + str = mkOptionType { name = "str"; description = "string"; diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index 16bd5795b245..bc227725a309 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -1172,6 +1172,11 @@ github = "e-user"; name = "Alexander Kahl"; }; + eadwu = { + email = "edmund.wu@protonmail.com"; + github = "eadwu"; + name = "Edmund Wu"; + }; earldouglas = { email = "james@earldouglas.com"; github = "earldouglas"; @@ -2854,6 +2859,11 @@ github = "nthorne"; name = "Niklas Thörne"; }; + numinit = { + email = "me@numin.it"; + github = "numinit"; + name = "Morgan Jones"; + }; nyanloutre = { email = "paul@nyanlout.re"; github = "nyanloutre"; @@ -2938,6 +2948,11 @@ github = "oxij"; name = "Jan Malakhovski"; }; + oyren = { + email = "m.scheuren@oyra.eu"; + github = "oyren"; + name = "Moritz Scheuren"; + }; pSub = { email = "mail@pascal-wittmann.de"; github = "pSub"; @@ -3175,6 +3190,11 @@ github = "qknight"; name = "Joachim Schiele"; }; + qoelet = { + email = "kenny@machinesung.com"; + github = "qoelet"; + name = "Kenny Shen"; + }; ragge = { email = "r.dahlen@gmail.com"; github = "ragnard"; diff --git a/maintainers/scripts/all-tarballs.nix b/maintainers/scripts/all-tarballs.nix index d981a1fa7dbc..6a4de8a4b951 100644 --- a/maintainers/scripts/all-tarballs.nix +++ b/maintainers/scripts/all-tarballs.nix @@ -6,13 +6,11 @@ $ copy-tarballs.pl --expr 'import <nixpkgs/maintainers/scripts/all-tarballs.nix>' */ -removeAttrs (import ../../pkgs/top-level/release.nix +import ../../pkgs/top-level/release.nix { # Don't apply ‘hydraJob’ to jobs, because then we can't get to the # dependency graph. scrubJobs = false; # No need to evaluate on i686. supportedSystems = [ "x86_64-linux" ]; - }) - [ # Remove jobs whose evaluation depends on a writable Nix store. - "tarball" "unstable" "darwin-tested" - ] + limitedSupportedSystems = []; + } diff --git a/maintainers/scripts/update-python-libraries b/maintainers/scripts/update-python-libraries index 4536662c8420..d95ff4f347e8 100755 --- a/maintainers/scripts/update-python-libraries +++ b/maintainers/scripts/update-python-libraries @@ -262,7 +262,7 @@ def _update_package(path, target): if new_version == version: logging.info("Path {}: no update available for {}.".format(path, pname)) return False - elif new_version <= version: + elif Version(new_version) <= Version(version): raise ValueError("downgrade for {}.".format(pname)) if not new_sha256: raise ValueError("no file available for {}.".format(pname)) diff --git a/nixos/doc/manual/release-notes/rl-1809.xml b/nixos/doc/manual/release-notes/rl-1809.xml index 51e77d24a74e..13b244e12f8c 100644 --- a/nixos/doc/manual/release-notes/rl-1809.xml +++ b/nixos/doc/manual/release-notes/rl-1809.xml @@ -127,6 +127,12 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' Make sure the key file is accessible to the daemon. </para> </listitem> + <listitem> + <para> + <varname>dockerTools.buildImage</varname> now uses <literal>null</literal> as default value for <varname>tag</varname>, + which indicates that the nix output hash will be used as tag. + </para> + </listitem> </itemizedlist> </section> diff --git a/nixos/modules/config/ldap.nix b/nixos/modules/config/ldap.nix index 710dfdd01af5..0693e896f715 100644 --- a/nixos/modules/config/ldap.nix +++ b/nixos/modules/config/ldap.nix @@ -215,11 +215,11 @@ in ); users = mkIf cfg.daemon.enable { - extraGroups.nslcd = { + groups.nslcd = { gid = config.ids.gids.nslcd; }; - extraUsers.nslcd = { + users.nslcd = { uid = config.ids.uids.nslcd; description = "nslcd user."; group = "nslcd"; diff --git a/nixos/modules/config/networking.nix b/nixos/modules/config/networking.nix index 4101ef82f3e1..48c3b41bc091 100644 --- a/nixos/modules/config/networking.nix +++ b/nixos/modules/config/networking.nix @@ -231,10 +231,6 @@ in # a collision with an apparently unrelated environment # variable with the same name exported by dhcpcd. interface_order='lo lo[0-9]*' - '' + optionalString config.services.nscd.enable '' - # Invalidate the nscd cache whenever resolv.conf is - # regenerated. - libc_restart='${pkgs.systemd}/bin/systemctl try-restart --no-block nscd.service 2> /dev/null' '' + optionalString (length resolvconfOptions > 0) '' # Options as described in resolv.conf(5) resolv_conf_options='${concatStringsSep " " resolvconfOptions}' diff --git a/nixos/modules/config/pulseaudio.nix b/nixos/modules/config/pulseaudio.nix index 90cea47b70ae..3fd882789af2 100644 --- a/nixos/modules/config/pulseaudio.nix +++ b/nixos/modules/config/pulseaudio.nix @@ -264,7 +264,7 @@ in { }) (mkIf systemWide { - users.extraUsers.pulse = { + users.users.pulse = { # For some reason, PulseAudio wants UID == GID. uid = assert uid == gid; uid; group = "pulse"; @@ -274,7 +274,7 @@ in { createHome = true; }; - users.extraGroups.pulse.gid = gid; + users.groups.pulse.gid = gid; systemd.services.pulseaudio = { description = "PulseAudio System-Wide Server"; diff --git a/nixos/modules/hardware/nitrokey.nix b/nixos/modules/hardware/nitrokey.nix index bd440de69722..60fc95a75828 100644 --- a/nixos/modules/hardware/nitrokey.nix +++ b/nixos/modules/hardware/nitrokey.nix @@ -36,6 +36,6 @@ in { inherit (cfg) group; } )) ]; - users.extraGroups."${cfg.group}" = {}; + users.groups."${cfg.group}" = {}; }; } diff --git a/nixos/modules/installer/cd-dvd/installation-cd-base.nix b/nixos/modules/installer/cd-dvd/installation-cd-base.nix index 1ed56386e6e7..298b8d88bb59 100644 --- a/nixos/modules/installer/cd-dvd/installation-cd-base.nix +++ b/nixos/modules/installer/cd-dvd/installation-cd-base.nix @@ -30,7 +30,7 @@ with lib; boot.loader.grub.memtest86.enable = true; # Allow the user to log in as root without a password. - users.extraUsers.root.initialHashedPassword = ""; + users.users.root.initialHashedPassword = ""; system.nixos.stateVersion = mkDefault "18.03"; } diff --git a/nixos/modules/installer/cd-dvd/sd-image-aarch64.nix b/nixos/modules/installer/cd-dvd/sd-image-aarch64.nix index ddf91a5656c7..4eb28434e192 100644 --- a/nixos/modules/installer/cd-dvd/sd-image-aarch64.nix +++ b/nixos/modules/installer/cd-dvd/sd-image-aarch64.nix @@ -34,7 +34,7 @@ in boot.kernelParams = ["cma=32M" "console=ttyS0,115200n8" "console=ttyAMA0,115200n8" "console=tty0"]; # FIXME: this probably should be in installation-device.nix - users.extraUsers.root.initialHashedPassword = ""; + users.users.root.initialHashedPassword = ""; sdImage = { populateBootCommands = let diff --git a/nixos/modules/installer/cd-dvd/sd-image-armv7l-multiplatform.nix b/nixos/modules/installer/cd-dvd/sd-image-armv7l-multiplatform.nix index 891923234dda..0d595503f193 100644 --- a/nixos/modules/installer/cd-dvd/sd-image-armv7l-multiplatform.nix +++ b/nixos/modules/installer/cd-dvd/sd-image-armv7l-multiplatform.nix @@ -35,7 +35,7 @@ in boot.kernelParams = ["console=ttyS0,115200n8" "console=ttymxc0,115200n8" "console=ttyAMA0,115200n8" "console=ttyO0,115200n8" "console=ttySAC2,115200n8" "console=tty0"]; # FIXME: this probably should be in installation-device.nix - users.extraUsers.root.initialHashedPassword = ""; + users.users.root.initialHashedPassword = ""; sdImage = { populateBootCommands = let diff --git a/nixos/modules/installer/cd-dvd/sd-image-raspberrypi.nix b/nixos/modules/installer/cd-dvd/sd-image-raspberrypi.nix index fe6cc4161630..aa52844288ca 100644 --- a/nixos/modules/installer/cd-dvd/sd-image-raspberrypi.nix +++ b/nixos/modules/installer/cd-dvd/sd-image-raspberrypi.nix @@ -28,7 +28,7 @@ in boot.kernelPackages = pkgs.linuxPackages_rpi; # FIXME: this probably should be in installation-device.nix - users.extraUsers.root.initialHashedPassword = ""; + users.users.root.initialHashedPassword = ""; sdImage = { populateBootCommands = let diff --git a/nixos/modules/installer/netboot/netboot-base.nix b/nixos/modules/installer/netboot/netboot-base.nix index b12eaccf8707..5e8f7f93d92a 100644 --- a/nixos/modules/installer/netboot/netboot-base.nix +++ b/nixos/modules/installer/netboot/netboot-base.nix @@ -16,5 +16,5 @@ with lib; ]; # Allow the user to log in as root without a password. - users.extraUsers.root.initialHashedPassword = ""; + users.users.root.initialHashedPassword = ""; } diff --git a/nixos/modules/installer/tools/nixos-generate-config.pl b/nixos/modules/installer/tools/nixos-generate-config.pl index a198c2d49b53..165566912401 100644 --- a/nixos/modules/installer/tools/nixos-generate-config.pl +++ b/nixos/modules/installer/tools/nixos-generate-config.pl @@ -619,7 +619,7 @@ $bootLoaderConfig # services.xserver.desktopManager.plasma5.enable = true; # Define a user account. Don't forget to set a password with ‘passwd’. - # users.extraUsers.guest = { + # users.users.guest = { # isNormalUser = true; # uid = 1000; # }; diff --git a/nixos/modules/installer/virtualbox-demo.nix b/nixos/modules/installer/virtualbox-demo.nix index c40e30354206..f58c36587801 100644 --- a/nixos/modules/installer/virtualbox-demo.nix +++ b/nixos/modules/installer/virtualbox-demo.nix @@ -14,7 +14,7 @@ with lib; boot.loader.grub.fsIdentifier = "provided"; # Allow mounting of shared folders. - users.extraUsers.demo.extraGroups = [ "vboxsf" ]; + users.users.demo.extraGroups = [ "vboxsf" ]; # Add some more video drivers to give X11 a shot at working in # VMware and QEMU. diff --git a/nixos/modules/misc/locate.nix b/nixos/modules/misc/locate.nix index ce5765cf1978..dd6a2f67b30d 100644 --- a/nixos/modules/misc/locate.nix +++ b/nixos/modules/misc/locate.nix @@ -101,7 +101,7 @@ in { }; config = mkIf cfg.enable { - users.extraGroups = mkIf isMLocate { mlocate = {}; }; + users.groups = mkIf isMLocate { mlocate = {}; }; security.wrappers = mkIf isMLocate { locate = { diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index c70d52c94cdb..f6628b8e9c51 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -627,6 +627,7 @@ ./services/security/hologram-agent.nix ./services/security/munge.nix ./services/security/oauth2_proxy.nix + ./services/security/oauth2_proxy_nginx.nix ./services/security/physlock.nix ./services/security/shibboleth-sp.nix ./services/security/sks.nix diff --git a/nixos/modules/profiles/demo.nix b/nixos/modules/profiles/demo.nix index c3ee6e98371e..7477795a94e9 100644 --- a/nixos/modules/profiles/demo.nix +++ b/nixos/modules/profiles/demo.nix @@ -3,7 +3,7 @@ { imports = [ ./graphical.nix ]; - users.extraUsers.demo = + users.users.demo = { isNormalUser = true; description = "Demo user account"; extraGroups = [ "wheel" ]; diff --git a/nixos/modules/programs/adb.nix b/nixos/modules/programs/adb.nix index f648d70bd9fa..942572cef9d5 100644 --- a/nixos/modules/programs/adb.nix +++ b/nixos/modules/programs/adb.nix @@ -14,7 +14,7 @@ with lib; description = '' Whether to configure system to use Android Debug Bridge (adb). To grant access to a user, it must be part of adbusers group: - <code>users.extraUsers.alice.extraGroups = ["adbusers"];</code> + <code>users.users.alice.extraGroups = ["adbusers"];</code> ''; relatedPackages = [ ["androidenv" "platformTools"] ]; }; @@ -25,6 +25,6 @@ with lib; config = mkIf config.programs.adb.enable { services.udev.packages = [ pkgs.android-udev-rules ]; environment.systemPackages = [ pkgs.androidenv.platformTools ]; - users.extraGroups.adbusers = {}; + users.groups.adbusers = {}; }; } diff --git a/nixos/modules/programs/gphoto2.nix b/nixos/modules/programs/gphoto2.nix index ca7c6fb28f52..93923ff3133c 100644 --- a/nixos/modules/programs/gphoto2.nix +++ b/nixos/modules/programs/gphoto2.nix @@ -15,7 +15,7 @@ with lib; Whether to configure system to use gphoto2. To grant digital camera access to a user, the user must be part of the camera group: - <code>users.extraUsers.alice.extraGroups = ["camera"];</code> + <code>users.users.alice.extraGroups = ["camera"];</code> ''; }; }; @@ -25,6 +25,6 @@ with lib; config = mkIf config.programs.gphoto2.enable { services.udev.packages = [ pkgs.libgphoto2 ]; environment.systemPackages = [ pkgs.gphoto2 ]; - users.extraGroups.camera = {}; + users.groups.camera = {}; }; } diff --git a/nixos/modules/programs/sway.nix b/nixos/modules/programs/sway.nix index d9503d6004ff..0eaaf6b85b99 100644 --- a/nixos/modules/programs/sway.nix +++ b/nixos/modules/programs/sway.nix @@ -73,7 +73,7 @@ in { permissions = "u+rx,g+rx"; }; - users.extraGroups.sway = {}; + users.groups.sway = {}; security.pam.services.swaylock = {}; hardware.opengl.enable = mkDefault true; diff --git a/nixos/modules/programs/wireshark.nix b/nixos/modules/programs/wireshark.nix index 710d223b6f59..819f15b98a05 100644 --- a/nixos/modules/programs/wireshark.nix +++ b/nixos/modules/programs/wireshark.nix @@ -29,7 +29,7 @@ in { config = mkIf cfg.enable { environment.systemPackages = [ wireshark ]; - users.extraGroups.wireshark = {}; + users.groups.wireshark = {}; security.wrappers.dumpcap = { source = "${wireshark}/bin/dumpcap"; diff --git a/nixos/modules/security/pam_mount.nix b/nixos/modules/security/pam_mount.nix index a5299728348d..8b131c54a2a5 100644 --- a/nixos/modules/security/pam_mount.nix +++ b/nixos/modules/security/pam_mount.nix @@ -40,7 +40,7 @@ in target = "security/pam_mount.conf.xml"; source = let - extraUserVolumes = filterAttrs (n: u: u.cryptHomeLuks != null) config.users.extraUsers; + extraUserVolumes = filterAttrs (n: u: u.cryptHomeLuks != null) config.users.users; userVolumeEntry = user: "<volume user=\"${user.name}\" path=\"${user.cryptHomeLuks}\" mountpoint=\"${user.home}\" />\n"; in pkgs.writeText "pam_mount.conf.xml" '' diff --git a/nixos/modules/security/polkit.nix b/nixos/modules/security/polkit.nix index 7e59408a5b0b..04685f2c9ea1 100644 --- a/nixos/modules/security/polkit.nix +++ b/nixos/modules/security/polkit.nix @@ -94,7 +94,7 @@ in rm -rf /var/lib/{polkit-1,PolicyKit} ''; - users.extraUsers.polkituser = { + users.users.polkituser = { description = "PolKit daemon"; uid = config.ids.uids.polkituser; }; diff --git a/nixos/modules/security/rtkit.nix b/nixos/modules/security/rtkit.nix index afe93f24273d..f6dda21c6006 100644 --- a/nixos/modules/security/rtkit.nix +++ b/nixos/modules/security/rtkit.nix @@ -34,7 +34,7 @@ with lib; services.dbus.packages = [ pkgs.rtkit ]; - users.extraUsers = singleton + users.users = singleton { name = "rtkit"; uid = config.ids.uids.rtkit; description = "RealtimeKit daemon"; diff --git a/nixos/modules/security/sudo.nix b/nixos/modules/security/sudo.nix index 24283e1d6165..361a7e869602 100644 --- a/nixos/modules/security/sudo.nix +++ b/nixos/modules/security/sudo.nix @@ -66,6 +66,9 @@ in security.sudo.extraRules = mkOption { description = '' Define specific rules to be in the <filename>sudoers</filename> file. + More specific rules should come after more general ones in order to + yield the expected behavior. You can use mkBefore/mkAfter to ensure + this is the case when configuration options are merged. ''; default = []; example = [ diff --git a/nixos/modules/services/admin/oxidized.nix b/nixos/modules/services/admin/oxidized.nix index 891ca6323c3c..70f7dd9e3647 100644 --- a/nixos/modules/services/admin/oxidized.nix +++ b/nixos/modules/services/admin/oxidized.nix @@ -83,8 +83,8 @@ in }; config = mkIf cfg.enable { - users.extraGroups.${cfg.group} = { }; - users.extraUsers.${cfg.user} = { + users.groups.${cfg.group} = { }; + users.users.${cfg.user} = { description = "Oxidized service user"; group = cfg.group; home = cfg.dataDir; diff --git a/nixos/modules/services/amqp/activemq/default.nix b/nixos/modules/services/amqp/activemq/default.nix index 261f97617664..27bfd91cd2d5 100644 --- a/nixos/modules/services/amqp/activemq/default.nix +++ b/nixos/modules/services/amqp/activemq/default.nix @@ -93,13 +93,13 @@ in { }; config = mkIf cfg.enable { - users.extraUsers.activemq = { + users.users.activemq = { description = "ActiveMQ server user"; group = "activemq"; uid = config.ids.uids.activemq; }; - users.extraGroups.activemq.gid = config.ids.gids.activemq; + users.groups.activemq.gid = config.ids.gids.activemq; systemd.services.activemq_init = { wantedBy = [ "activemq.service" ]; diff --git a/nixos/modules/services/amqp/rabbitmq.nix b/nixos/modules/services/amqp/rabbitmq.nix index f536d56d7c63..bb6fc0a104df 100644 --- a/nixos/modules/services/amqp/rabbitmq.nix +++ b/nixos/modules/services/amqp/rabbitmq.nix @@ -83,7 +83,7 @@ in { environment.systemPackages = [ pkgs.rabbitmq_server ]; - users.extraUsers.rabbitmq = { + users.users.rabbitmq = { description = "RabbitMQ server user"; home = "${cfg.dataDir}"; createHome = true; @@ -91,7 +91,7 @@ in { uid = config.ids.uids.rabbitmq; }; - users.extraGroups.rabbitmq.gid = config.ids.gids.rabbitmq; + users.groups.rabbitmq.gid = config.ids.gids.rabbitmq; systemd.services.rabbitmq = { description = "RabbitMQ Server"; diff --git a/nixos/modules/services/audio/liquidsoap.nix b/nixos/modules/services/audio/liquidsoap.nix index 1c19ed36bdc7..66f84ef20762 100644 --- a/nixos/modules/services/audio/liquidsoap.nix +++ b/nixos/modules/services/audio/liquidsoap.nix @@ -57,7 +57,7 @@ in config = mkIf (builtins.length streams != 0) { - users.extraUsers.liquidsoap = { + users.users.liquidsoap = { uid = config.ids.uids.liquidsoap; group = "liquidsoap"; extraGroups = [ "audio" ]; @@ -66,7 +66,7 @@ in createHome = true; }; - users.extraGroups.liquidsoap.gid = config.ids.gids.liquidsoap; + users.groups.liquidsoap.gid = config.ids.gids.liquidsoap; systemd.services = builtins.listToAttrs ( map streamService streams ); }; diff --git a/nixos/modules/services/audio/mopidy.nix b/nixos/modules/services/audio/mopidy.nix index 52613d450b51..e2f4ec39f94c 100644 --- a/nixos/modules/services/audio/mopidy.nix +++ b/nixos/modules/services/audio/mopidy.nix @@ -93,7 +93,7 @@ in { }; }; - users.extraUsers.mopidy = { + users.users.mopidy = { inherit uid; group = "mopidy"; extraGroups = [ "audio" ]; @@ -101,7 +101,7 @@ in { home = "${cfg.dataDir}"; }; - users.extraGroups.mopidy.gid = gid; + users.groups.mopidy.gid = gid; }; diff --git a/nixos/modules/services/audio/mpd.nix b/nixos/modules/services/audio/mpd.nix index 94020ed05d67..3add6556d0df 100644 --- a/nixos/modules/services/audio/mpd.nix +++ b/nixos/modules/services/audio/mpd.nix @@ -184,7 +184,7 @@ in { }; }; - users.extraUsers = optionalAttrs (cfg.user == name) (singleton { + users.users = optionalAttrs (cfg.user == name) (singleton { inherit uid; inherit name; group = cfg.group; @@ -193,7 +193,7 @@ in { home = "${cfg.dataDir}"; }); - users.extraGroups = optionalAttrs (cfg.group == name) (singleton { + users.groups = optionalAttrs (cfg.group == name) (singleton { inherit name; gid = gid; }); diff --git a/nixos/modules/services/audio/squeezelite.nix b/nixos/modules/services/audio/squeezelite.nix index f1a60be992d8..57ae38559939 100644 --- a/nixos/modules/services/audio/squeezelite.nix +++ b/nixos/modules/services/audio/squeezelite.nix @@ -54,7 +54,7 @@ in { }; }; - users.extraUsers.squeezelite= { + users.users.squeezelite= { inherit uid; group = "nogroup"; extraGroups = [ "audio" ]; diff --git a/nixos/modules/services/backup/bacula.nix b/nixos/modules/services/backup/bacula.nix index 340b0cf07234..e2806a695398 100644 --- a/nixos/modules/services/backup/bacula.nix +++ b/nixos/modules/services/backup/bacula.nix @@ -397,7 +397,7 @@ in { environment.systemPackages = [ pkgs.bacula ]; - users.extraUsers.bacula = { + users.users.bacula = { group = "bacula"; uid = config.ids.uids.bacula; home = "${libDir}"; @@ -406,6 +406,6 @@ in { shell = "${pkgs.bash}/bin/bash"; }; - users.extraGroups.bacula.gid = config.ids.gids.bacula; + users.groups.bacula.gid = config.ids.gids.bacula; }; } diff --git a/nixos/modules/services/backup/duplicati.nix b/nixos/modules/services/backup/duplicati.nix index 379fde1fe038..80287f30b813 100644 --- a/nixos/modules/services/backup/duplicati.nix +++ b/nixos/modules/services/backup/duplicati.nix @@ -44,13 +44,13 @@ in }; }; - users.extraUsers.duplicati = { + users.users.duplicati = { uid = config.ids.uids.duplicati; home = "/var/lib/duplicati"; createHome = true; group = "duplicati"; }; - users.extraGroups.duplicati.gid = config.ids.gids.duplicati; + users.groups.duplicati.gid = config.ids.gids.duplicati; }; } diff --git a/nixos/modules/services/backup/mysql-backup.nix b/nixos/modules/services/backup/mysql-backup.nix index 3f533fa457dc..f0c273ffebf1 100644 --- a/nixos/modules/services/backup/mysql-backup.nix +++ b/nixos/modules/services/backup/mysql-backup.nix @@ -84,7 +84,7 @@ in }; config = mkIf cfg.enable { - users.extraUsers = optionalAttrs (cfg.user == defaultUser) (singleton + users.users = optionalAttrs (cfg.user == defaultUser) (singleton { name = defaultUser; isSystemUser = true; createHome = false; diff --git a/nixos/modules/services/backup/restic-rest-server.nix b/nixos/modules/services/backup/restic-rest-server.nix index d4b47a099410..d1b775f150dc 100644 --- a/nixos/modules/services/backup/restic-rest-server.nix +++ b/nixos/modules/services/backup/restic-rest-server.nix @@ -95,13 +95,13 @@ in }; }; - users.extraUsers.restic = { + users.users.restic = { group = "restic"; home = cfg.dataDir; createHome = true; uid = config.ids.uids.restic; }; - users.extraGroups.restic.gid = config.ids.uids.restic; + users.groups.restic.gid = config.ids.uids.restic; }; } diff --git a/nixos/modules/services/cluster/hadoop/default.nix b/nixos/modules/services/cluster/hadoop/default.nix index 53c13fd0603d..240938f0d621 100644 --- a/nixos/modules/services/cluster/hadoop/default.nix +++ b/nixos/modules/services/cluster/hadoop/default.nix @@ -52,9 +52,9 @@ with lib; config = mkMerge [ - (mkIf (builtins.hasAttr "yarn" config.users.extraUsers || - builtins.hasAttr "hdfs" config.users.extraUsers ) { - users.extraGroups.hadoop = { + (mkIf (builtins.hasAttr "yarn" config.users.users || + builtins.hasAttr "hdfs" config.users.users) { + users.groups.hadoop = { gid = config.ids.gids.hadoop; }; }) diff --git a/nixos/modules/services/cluster/hadoop/hdfs.nix b/nixos/modules/services/cluster/hadoop/hdfs.nix index 48020e6139cb..a38b6a78d3a5 100644 --- a/nixos/modules/services/cluster/hadoop/hdfs.nix +++ b/nixos/modules/services/cluster/hadoop/hdfs.nix @@ -62,7 +62,7 @@ with lib; (mkIf ( cfg.hdfs.namenode.enabled || cfg.hdfs.datanode.enabled ) { - users.extraUsers.hdfs = { + users.users.hdfs = { description = "Hadoop HDFS user"; group = "hadoop"; uid = config.ids.uids.hdfs; diff --git a/nixos/modules/services/cluster/hadoop/yarn.nix b/nixos/modules/services/cluster/hadoop/yarn.nix index ce5b04a331c5..5345a2732d7e 100644 --- a/nixos/modules/services/cluster/hadoop/yarn.nix +++ b/nixos/modules/services/cluster/hadoop/yarn.nix @@ -27,7 +27,7 @@ with lib; cfg.yarn.resourcemanager.enabled || cfg.yarn.nodemanager.enabled ) { - users.extraUsers.yarn = { + users.users.yarn = { description = "Hadoop YARN user"; group = "hadoop"; uid = config.ids.uids.yarn; diff --git a/nixos/modules/services/cluster/kubernetes/default.nix b/nixos/modules/services/cluster/kubernetes/default.nix index 5e87ae88f5a8..2707c176efd8 100644 --- a/nixos/modules/services/cluster/kubernetes/default.nix +++ b/nixos/modules/services/cluster/kubernetes/default.nix @@ -1145,7 +1145,7 @@ in { ]; environment.systemPackages = [ cfg.package ]; - users.extraUsers = singleton { + users.users = singleton { name = "kubernetes"; uid = config.ids.uids.kubernetes; description = "Kubernetes user"; @@ -1154,7 +1154,7 @@ in { home = cfg.dataDir; createHome = true; }; - users.extraGroups.kubernetes.gid = config.ids.gids.kubernetes; + users.groups.kubernetes.gid = config.ids.gids.kubernetes; # dns addon is enabled by default services.kubernetes.addons.dns.enable = mkDefault true; diff --git a/nixos/modules/services/continuous-integration/buildbot/master.nix b/nixos/modules/services/continuous-integration/buildbot/master.nix index 846efc8b5b9a..8d767de37f00 100644 --- a/nixos/modules/services/continuous-integration/buildbot/master.nix +++ b/nixos/modules/services/continuous-integration/buildbot/master.nix @@ -191,11 +191,11 @@ in { }; config = mkIf cfg.enable { - users.extraGroups = optional (cfg.group == "buildbot") { + users.groups = optional (cfg.group == "buildbot") { name = "buildbot"; }; - users.extraUsers = optional (cfg.user == "buildbot") { + users.users = optional (cfg.user == "buildbot") { name = "buildbot"; description = "Buildbot User."; isNormalUser = true; diff --git a/nixos/modules/services/continuous-integration/buildbot/worker.nix b/nixos/modules/services/continuous-integration/buildbot/worker.nix index a97f571e89df..67c541570b97 100644 --- a/nixos/modules/services/continuous-integration/buildbot/worker.nix +++ b/nixos/modules/services/continuous-integration/buildbot/worker.nix @@ -84,11 +84,11 @@ in { }; config = mkIf cfg.enable { - users.extraGroups = optional (cfg.group == "bbworker") { + users.groups = optional (cfg.group == "bbworker") { name = "bbworker"; }; - users.extraUsers = optional (cfg.user == "bbworker") { + users.users = optional (cfg.user == "bbworker") { name = "bbworker"; description = "Buildbot Worker User."; isNormalUser = true; diff --git a/nixos/modules/services/continuous-integration/buildkite-agent.nix b/nixos/modules/services/continuous-integration/buildkite-agent.nix index d647b7b9fa49..9daf391c73c4 100644 --- a/nixos/modules/services/continuous-integration/buildkite-agent.nix +++ b/nixos/modules/services/continuous-integration/buildkite-agent.nix @@ -185,7 +185,7 @@ in }; config = mkIf config.services.buildkite-agent.enable { - users.extraUsers.buildkite-agent = + users.users.buildkite-agent = { name = "buildkite-agent"; home = cfg.dataDir; createHome = true; diff --git a/nixos/modules/services/continuous-integration/gitlab-runner.nix b/nixos/modules/services/continuous-integration/gitlab-runner.nix index 6d5cea4f77a5..a0aff1b8b5b9 100644 --- a/nixos/modules/services/continuous-integration/gitlab-runner.nix +++ b/nixos/modules/services/continuous-integration/gitlab-runner.nix @@ -134,7 +134,7 @@ in # Make the gitlab-runner command availabe so users can query the runner environment.systemPackages = [ cfg.package ]; - users.extraUsers.gitlab-runner = { + users.users.gitlab-runner = { group = "gitlab-runner"; extraGroups = optional hasDocker "docker"; uid = config.ids.uids.gitlab-runner; @@ -142,6 +142,6 @@ in createHome = true; }; - users.extraGroups.gitlab-runner.gid = config.ids.gids.gitlab-runner; + users.groups.gitlab-runner.gid = config.ids.gids.gitlab-runner; }; } diff --git a/nixos/modules/services/continuous-integration/gocd-agent/default.nix b/nixos/modules/services/continuous-integration/gocd-agent/default.nix index 05adb18fbe91..8126f27c2b0c 100644 --- a/nixos/modules/services/continuous-integration/gocd-agent/default.nix +++ b/nixos/modules/services/continuous-integration/gocd-agent/default.nix @@ -135,12 +135,12 @@ in { }; config = mkIf cfg.enable { - users.extraGroups = optional (cfg.group == "gocd-agent") { + users.groups = optional (cfg.group == "gocd-agent") { name = "gocd-agent"; gid = config.ids.gids.gocd-agent; }; - users.extraUsers = optional (cfg.user == "gocd-agent") { + users.users = optional (cfg.user == "gocd-agent") { name = "gocd-agent"; description = "gocd-agent user"; createHome = true; diff --git a/nixos/modules/services/continuous-integration/gocd-server/default.nix b/nixos/modules/services/continuous-integration/gocd-server/default.nix index 07e00f17f1e8..8f177da129e5 100644 --- a/nixos/modules/services/continuous-integration/gocd-server/default.nix +++ b/nixos/modules/services/continuous-integration/gocd-server/default.nix @@ -113,8 +113,8 @@ in { extraOptions = mkOption { default = [ ]; - example = [ - "-X debug" + example = [ + "-X debug" "-Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005" "-verbose:gc" "-Xloggc:go-server-gc.log" @@ -143,12 +143,12 @@ in { }; config = mkIf cfg.enable { - users.extraGroups = optional (cfg.group == "gocd-server") { + users.groups = optional (cfg.group == "gocd-server") { name = "gocd-server"; gid = config.ids.gids.gocd-server; }; - users.extraUsers = optional (cfg.user == "gocd-server") { + users.users = optional (cfg.user == "gocd-server") { name = "gocd-server"; description = "gocd-server user"; createHome = true; diff --git a/nixos/modules/services/continuous-integration/hydra/default.nix b/nixos/modules/services/continuous-integration/hydra/default.nix index 2fa7c59a965d..c7fe4eeeab99 100644 --- a/nixos/modules/services/continuous-integration/hydra/default.nix +++ b/nixos/modules/services/continuous-integration/hydra/default.nix @@ -194,11 +194,11 @@ in config = mkIf cfg.enable { - users.extraGroups.hydra = { + users.groups.hydra = { gid = config.ids.gids.hydra; }; - users.extraUsers.hydra = + users.users.hydra = { description = "Hydra"; group = "hydra"; createHome = true; @@ -207,7 +207,7 @@ in uid = config.ids.uids.hydra; }; - users.extraUsers.hydra-queue-runner = + users.users.hydra-queue-runner = { description = "Hydra queue runner"; group = "hydra"; useDefaultShell = true; @@ -215,7 +215,7 @@ in uid = config.ids.uids.hydra-queue-runner; }; - users.extraUsers.hydra-www = + users.users.hydra-www = { description = "Hydra web server"; group = "hydra"; useDefaultShell = true; diff --git a/nixos/modules/services/continuous-integration/jenkins/default.nix b/nixos/modules/services/continuous-integration/jenkins/default.nix index c2f4e9c0c5a7..1eca45fbd570 100644 --- a/nixos/modules/services/continuous-integration/jenkins/default.nix +++ b/nixos/modules/services/continuous-integration/jenkins/default.nix @@ -150,12 +150,12 @@ in { pkgs.dejavu_fonts ]; - users.extraGroups = optional (cfg.group == "jenkins") { + users.groups = optional (cfg.group == "jenkins") { name = "jenkins"; gid = config.ids.gids.jenkins; }; - users.extraUsers = optional (cfg.user == "jenkins") { + users.users = optional (cfg.user == "jenkins") { name = "jenkins"; description = "jenkins user"; createHome = true; diff --git a/nixos/modules/services/continuous-integration/jenkins/slave.nix b/nixos/modules/services/continuous-integration/jenkins/slave.nix index a0216caf2b5c..d8f55fb826f2 100644 --- a/nixos/modules/services/continuous-integration/jenkins/slave.nix +++ b/nixos/modules/services/continuous-integration/jenkins/slave.nix @@ -50,12 +50,12 @@ in { }; config = mkIf (cfg.enable && !masterCfg.enable) { - users.extraGroups = optional (cfg.group == "jenkins") { + users.groups = optional (cfg.group == "jenkins") { name = "jenkins"; gid = config.ids.gids.jenkins; }; - users.extraUsers = optional (cfg.user == "jenkins") { + users.users = optional (cfg.user == "jenkins") { name = "jenkins"; description = "jenkins user"; createHome = true; diff --git a/nixos/modules/services/databases/4store-endpoint.nix b/nixos/modules/services/databases/4store-endpoint.nix index d528355671f6..59ed0e5f0afd 100644 --- a/nixos/modules/services/databases/4store-endpoint.nix +++ b/nixos/modules/services/databases/4store-endpoint.nix @@ -52,7 +52,7 @@ with lib; message = "Must specify 4Store database name"; }; - users.extraUsers = singleton + users.users = singleton { name = endpointUser; uid = config.ids.uids.fourstorehttp; description = "4Store SPARQL endpoint user"; diff --git a/nixos/modules/services/databases/4store.nix b/nixos/modules/services/databases/4store.nix index abb62e1f2637..be4351c1c38f 100644 --- a/nixos/modules/services/databases/4store.nix +++ b/nixos/modules/services/databases/4store.nix @@ -43,7 +43,7 @@ with lib; message = "Must specify 4Store database name."; }; - users.extraUsers = singleton + users.users = singleton { name = fourStoreUser; uid = config.ids.uids.fourstore; description = "4Store database user"; diff --git a/nixos/modules/services/databases/cassandra.nix b/nixos/modules/services/databases/cassandra.nix index 1e5cd8f54130..09b3fbd8a62a 100644 --- a/nixos/modules/services/databases/cassandra.nix +++ b/nixos/modules/services/databases/cassandra.nix @@ -420,7 +420,7 @@ in { 9160 ]; - users.extraUsers.cassandra = + users.users.cassandra = if config.ids.uids ? "cassandra" then { uid = config.ids.uids.cassandra; } // cassandraUser else cassandraUser ; diff --git a/nixos/modules/services/databases/clickhouse.nix b/nixos/modules/services/databases/clickhouse.nix index 631d7f8cba79..1b8771cec391 100644 --- a/nixos/modules/services/databases/clickhouse.nix +++ b/nixos/modules/services/databases/clickhouse.nix @@ -27,14 +27,14 @@ with lib; config = mkIf cfg.enable { - users.extraUsers.clickhouse = { + users.users.clickhouse = { name = "clickhouse"; uid = config.ids.uids.clickhouse; group = "clickhouse"; description = "ClickHouse server user"; }; - users.extraGroups.clickhouse.gid = config.ids.gids.clickhouse; + users.groups.clickhouse.gid = config.ids.gids.clickhouse; systemd.services.clickhouse = { description = "ClickHouse server"; diff --git a/nixos/modules/services/databases/couchdb.nix b/nixos/modules/services/databases/couchdb.nix index 52247bfb983e..ca89b1198205 100644 --- a/nixos/modules/services/databases/couchdb.nix +++ b/nixos/modules/services/databases/couchdb.nix @@ -198,13 +198,13 @@ in { }; }; - users.extraUsers.couchdb = { + users.users.couchdb = { description = "CouchDB Server user"; group = "couchdb"; uid = config.ids.uids.couchdb; }; - users.extraGroups.couchdb.gid = config.ids.gids.couchdb; + users.groups.couchdb.gid = config.ids.gids.couchdb; }; } diff --git a/nixos/modules/services/databases/firebird.nix b/nixos/modules/services/databases/firebird.nix index b9f66612d4eb..cc81b440450b 100644 --- a/nixos/modules/services/databases/firebird.nix +++ b/nixos/modules/services/databases/firebird.nix @@ -154,13 +154,13 @@ in # there are some additional settings which should be reviewed ''; - users.extraUsers.firebird = { + users.users.firebird = { description = "Firebird server user"; group = "firebird"; uid = config.ids.uids.firebird; }; - users.extraGroups.firebird.gid = config.ids.gids.firebird; + users.groups.firebird.gid = config.ids.gids.firebird; }; } diff --git a/nixos/modules/services/databases/foundationdb.nix b/nixos/modules/services/databases/foundationdb.nix index 693d2fde9916..91337cf791dc 100644 --- a/nixos/modules/services/databases/foundationdb.nix +++ b/nixos/modules/services/databases/foundationdb.nix @@ -325,14 +325,14 @@ in environment.systemPackages = [ pkg ]; - users.extraUsers = optionalAttrs (cfg.user == "foundationdb") (singleton + users.users = optionalAttrs (cfg.user == "foundationdb") (singleton { name = "foundationdb"; description = "FoundationDB User"; uid = config.ids.uids.foundationdb; group = cfg.group; }); - users.extraGroups = optionalAttrs (cfg.group == "foundationdb") (singleton + users.groups = optionalAttrs (cfg.group == "foundationdb") (singleton { name = "foundationdb"; gid = config.ids.gids.foundationdb; }); diff --git a/nixos/modules/services/databases/hbase.nix b/nixos/modules/services/databases/hbase.nix index 629d02209a9c..4772e897efe2 100644 --- a/nixos/modules/services/databases/hbase.nix +++ b/nixos/modules/services/databases/hbase.nix @@ -122,13 +122,13 @@ in { }; }; - users.extraUsers.hbase = { + users.users.hbase = { description = "HBase Server user"; group = "hbase"; uid = config.ids.uids.hbase; }; - users.extraGroups.hbase.gid = config.ids.gids.hbase; + users.groups.hbase.gid = config.ids.gids.hbase; }; } diff --git a/nixos/modules/services/databases/influxdb.nix b/nixos/modules/services/databases/influxdb.nix index 15b711f57b13..d7a028b25d8d 100644 --- a/nixos/modules/services/databases/influxdb.nix +++ b/nixos/modules/services/databases/influxdb.nix @@ -182,13 +182,13 @@ in ''; }; - users.extraUsers = optional (cfg.user == "influxdb") { + users.users = optional (cfg.user == "influxdb") { name = "influxdb"; uid = config.ids.uids.influxdb; description = "Influxdb daemon user"; }; - users.extraGroups = optional (cfg.group == "influxdb") { + users.groups = optional (cfg.group == "influxdb") { name = "influxdb"; gid = config.ids.gids.influxdb; }; diff --git a/nixos/modules/services/databases/memcached.nix b/nixos/modules/services/databases/memcached.nix index 46bc6fc5c132..7af452e4dced 100644 --- a/nixos/modules/services/databases/memcached.nix +++ b/nixos/modules/services/databases/memcached.nix @@ -64,7 +64,7 @@ in config = mkIf config.services.memcached.enable { - users.extraUsers = optional (cfg.user == "memcached") { + users.users = optional (cfg.user == "memcached") { name = "memcached"; description = "Memcached server user"; }; diff --git a/nixos/modules/services/databases/mongodb.nix b/nixos/modules/services/databases/mongodb.nix index 78dbf0d784cf..4c46d9228e5f 100644 --- a/nixos/modules/services/databases/mongodb.nix +++ b/nixos/modules/services/databases/mongodb.nix @@ -93,7 +93,7 @@ in config = mkIf config.services.mongodb.enable { - users.extraUsers.mongodb = mkIf (cfg.user == "mongodb") + users.users.mongodb = mkIf (cfg.user == "mongodb") { name = "mongodb"; uid = config.ids.uids.mongodb; description = "MongoDB server user"; diff --git a/nixos/modules/services/databases/mysql.nix b/nixos/modules/services/databases/mysql.nix index 15b9c788e872..3eb7879e2d9f 100644 --- a/nixos/modules/services/databases/mysql.nix +++ b/nixos/modules/services/databases/mysql.nix @@ -221,13 +221,13 @@ in mkDefault (if versionAtLeast config.system.nixos.stateVersion "17.09" then "/var/lib/mysql" else "/var/mysql"); - users.extraUsers.mysql = { + users.users.mysql = { description = "MySQL server user"; group = "mysql"; uid = config.ids.uids.mysql; }; - users.extraGroups.mysql.gid = config.ids.gids.mysql; + users.groups.mysql.gid = config.ids.gids.mysql; environment.systemPackages = [mysql]; diff --git a/nixos/modules/services/databases/neo4j.nix b/nixos/modules/services/databases/neo4j.nix index 424e08a6ee34..5015618c4247 100644 --- a/nixos/modules/services/databases/neo4j.nix +++ b/nixos/modules/services/databases/neo4j.nix @@ -139,7 +139,7 @@ in { environment.systemPackages = [ cfg.package ]; - users.extraUsers = singleton { + users.users = singleton { name = "neo4j"; uid = config.ids.uids.neo4j; description = "Neo4j daemon user"; diff --git a/nixos/modules/services/databases/openldap.nix b/nixos/modules/services/databases/openldap.nix index a67c61eb9949..9f2bf5ef8a9c 100644 --- a/nixos/modules/services/databases/openldap.nix +++ b/nixos/modules/services/databases/openldap.nix @@ -145,13 +145,13 @@ in "${configOpts}"; }; - users.extraUsers.openldap = + users.users.openldap = { name = cfg.user; group = cfg.group; uid = config.ids.uids.openldap; }; - users.extraGroups.openldap = + users.groups.openldap = { name = cfg.group; gid = config.ids.gids.openldap; }; diff --git a/nixos/modules/services/databases/opentsdb.nix b/nixos/modules/services/databases/opentsdb.nix index 489cdcffe658..b26fa9093ef4 100644 --- a/nixos/modules/services/databases/opentsdb.nix +++ b/nixos/modules/services/databases/opentsdb.nix @@ -97,13 +97,13 @@ in { }; }; - users.extraUsers.opentsdb = { + users.users.opentsdb = { description = "OpenTSDB Server user"; group = "opentsdb"; uid = config.ids.uids.opentsdb; }; - users.extraGroups.opentsdb.gid = config.ids.gids.opentsdb; + users.groups.opentsdb.gid = config.ids.gids.opentsdb; }; } diff --git a/nixos/modules/services/databases/postgresql.nix b/nixos/modules/services/databases/postgresql.nix index 42d61fa1b368..e33bee9db6e9 100644 --- a/nixos/modules/services/databases/postgresql.nix +++ b/nixos/modules/services/databases/postgresql.nix @@ -183,14 +183,14 @@ in host all all ::1/128 md5 ''; - users.extraUsers.postgres = + users.users.postgres = { name = "postgres"; uid = config.ids.uids.postgres; group = "postgres"; description = "PostgreSQL server user"; }; - users.extraGroups.postgres.gid = config.ids.gids.postgres; + users.groups.postgres.gid = config.ids.gids.postgres; environment.systemPackages = [ postgresql ]; diff --git a/nixos/modules/services/databases/redis.nix b/nixos/modules/services/databases/redis.nix index e4e38a4364a0..cc7b51982d1d 100644 --- a/nixos/modules/services/databases/redis.nix +++ b/nixos/modules/services/databases/redis.nix @@ -217,7 +217,7 @@ in allowedTCPPorts = [ cfg.port ]; }; - users.extraUsers.redis = + users.users.redis = { name = cfg.user; description = "Redis database user"; }; diff --git a/nixos/modules/services/databases/rethinkdb.nix b/nixos/modules/services/databases/rethinkdb.nix index cd8c386b08db..789d9c851d64 100644 --- a/nixos/modules/services/databases/rethinkdb.nix +++ b/nixos/modules/services/databases/rethinkdb.nix @@ -96,12 +96,12 @@ in ''; }; - users.extraUsers.rethinkdb = mkIf (cfg.user == "rethinkdb") + users.users.rethinkdb = mkIf (cfg.user == "rethinkdb") { name = "rethinkdb"; description = "RethinkDB server user"; }; - users.extraGroups = optionalAttrs (cfg.group == "rethinkdb") (singleton + users.groups = optionalAttrs (cfg.group == "rethinkdb") (singleton { name = "rethinkdb"; }); diff --git a/nixos/modules/services/databases/riak-cs.nix b/nixos/modules/services/databases/riak-cs.nix index 198efc29222a..2cb204f729a7 100644 --- a/nixos/modules/services/databases/riak-cs.nix +++ b/nixos/modules/services/databases/riak-cs.nix @@ -145,7 +145,7 @@ in ${cfg.extraAdvancedConfig} ''; - users.extraUsers.riak-cs = { + users.users.riak-cs = { name = "riak-cs"; uid = config.ids.uids.riak-cs; group = "riak"; diff --git a/nixos/modules/services/databases/riak.nix b/nixos/modules/services/databases/riak.nix index e0ebf164aef0..ac086cf55996 100644 --- a/nixos/modules/services/databases/riak.nix +++ b/nixos/modules/services/databases/riak.nix @@ -102,14 +102,14 @@ in ${cfg.extraAdvancedConfig} ''; - users.extraUsers.riak = { + users.users.riak = { name = "riak"; uid = config.ids.uids.riak; group = "riak"; description = "Riak server user"; }; - users.extraGroups.riak.gid = config.ids.gids.riak; + users.groups.riak.gid = config.ids.gids.riak; systemd.services.riak = { description = "Riak Server"; diff --git a/nixos/modules/services/databases/stanchion.nix b/nixos/modules/services/databases/stanchion.nix index a4597cac3cd6..9fe49f51edd2 100644 --- a/nixos/modules/services/databases/stanchion.nix +++ b/nixos/modules/services/databases/stanchion.nix @@ -143,14 +143,14 @@ in ${cfg.extraConfig} ''; - users.extraUsers.stanchion = { + users.users.stanchion = { name = "stanchion"; uid = config.ids.uids.stanchion; group = "stanchion"; description = "Stanchion server user"; }; - users.extraGroups.stanchion.gid = config.ids.gids.stanchion; + users.groups.stanchion.gid = config.ids.gids.stanchion; systemd.services.stanchion = { description = "Stanchion Server"; diff --git a/nixos/modules/services/databases/virtuoso.nix b/nixos/modules/services/databases/virtuoso.nix index 3231fede08fa..6ffc44a5274e 100644 --- a/nixos/modules/services/databases/virtuoso.nix +++ b/nixos/modules/services/databases/virtuoso.nix @@ -54,7 +54,7 @@ with lib; config = mkIf cfg.enable { - users.extraUsers = singleton + users.users = singleton { name = virtuosoUser; uid = config.ids.uids.virtuoso; description = "virtuoso user"; diff --git a/nixos/modules/services/desktops/pipewire.nix b/nixos/modules/services/desktops/pipewire.nix index 263a06156f84..13f3d61e84ca 100644 --- a/nixos/modules/services/desktops/pipewire.nix +++ b/nixos/modules/services/desktops/pipewire.nix @@ -3,20 +3,34 @@ with lib; -{ +let + cfg = config.services.pipewire; + packages = with pkgs; [ pipewire ]; + +in { ###### interface options = { services.pipewire = { enable = mkEnableOption "pipewire service"; + + socketActivation = mkOption { + default = true; + type = types.bool; + description = '' + Automatically run pipewire when connections are made to the pipewire socket. + ''; + }; }; }; ###### implementation - config = mkIf config.services.pipewire.enable { - environment.systemPackages = [ pkgs.pipewire ]; + config = mkIf cfg.enable { + environment.systemPackages = packages; + + systemd.packages = packages; - systemd.packages = [ pkgs.pipewire ]; + systemd.user.sockets.pipewire.wantedBy = lib.mkIf cfg.socketActivation [ "sockets.target" ]; }; meta.maintainers = with lib.maintainers; [ jtojnar ]; diff --git a/nixos/modules/services/editors/infinoted.nix b/nixos/modules/services/editors/infinoted.nix index 9074a4345eae..bba21caca85d 100644 --- a/nixos/modules/services/editors/infinoted.nix +++ b/nixos/modules/services/editors/infinoted.nix @@ -111,12 +111,12 @@ in { }; config = mkIf (cfg.enable) { - users.extraUsers = optional (cfg.user == "infinoted") + users.users = optional (cfg.user == "infinoted") { name = "infinoted"; description = "Infinoted user"; group = cfg.group; }; - users.extraGroups = optional (cfg.group == "infinoted") + users.groups = optional (cfg.group == "infinoted") { name = "infinoted"; }; diff --git a/nixos/modules/services/games/minecraft-server.nix b/nixos/modules/services/games/minecraft-server.nix index d2c8af6de0c5..f50d2897843a 100644 --- a/nixos/modules/services/games/minecraft-server.nix +++ b/nixos/modules/services/games/minecraft-server.nix @@ -45,7 +45,7 @@ in }; config = mkIf cfg.enable { - users.extraUsers.minecraft = { + users.users.minecraft = { description = "Minecraft Server Service user"; home = cfg.dataDir; createHome = true; diff --git a/nixos/modules/services/games/minetest-server.nix b/nixos/modules/services/games/minetest-server.nix index 58b73ac4f6bf..2de42f20f6cc 100644 --- a/nixos/modules/services/games/minetest-server.nix +++ b/nixos/modules/services/games/minetest-server.nix @@ -79,7 +79,7 @@ in }; config = mkIf cfg.enable { - users.extraUsers.minetest = { + users.users.minetest = { description = "Minetest Server Service user"; home = "/var/lib/minetest"; createHome = true; diff --git a/nixos/modules/services/games/terraria.nix b/nixos/modules/services/games/terraria.nix index 21aff780b672..ddf17599296a 100644 --- a/nixos/modules/services/games/terraria.nix +++ b/nixos/modules/services/games/terraria.nix @@ -105,14 +105,14 @@ in }; config = mkIf cfg.enable { - users.extraUsers.terraria = { + users.users.terraria = { description = "Terraria server service user"; home = "/var/lib/terraria"; createHome = true; uid = config.ids.uids.terraria; }; - users.extraGroups.terraria = { + users.groups.terraria = { gid = config.ids.gids.terraria; members = [ "terraria" ]; }; diff --git a/nixos/modules/services/hardware/sane.nix b/nixos/modules/services/hardware/sane.nix index d651ccaa5776..fe05c5a5c06f 100644 --- a/nixos/modules/services/hardware/sane.nix +++ b/nixos/modules/services/hardware/sane.nix @@ -124,7 +124,7 @@ in environment.sessionVariables = env; services.udev.packages = backends; - users.extraGroups."scanner".gid = config.ids.gids.scanner; + users.groups."scanner".gid = config.ids.gids.scanner; }) (mkIf config.services.saned.enable { @@ -152,7 +152,7 @@ in }; }; - users.extraUsers."scanner" = { + users.users."scanner" = { uid = config.ids.uids.scanner; group = "scanner"; }; diff --git a/nixos/modules/services/hardware/tcsd.nix b/nixos/modules/services/hardware/tcsd.nix index d957b5063d38..d4b0a9495d75 100644 --- a/nixos/modules/services/hardware/tcsd.nix +++ b/nixos/modules/services/hardware/tcsd.nix @@ -137,13 +137,13 @@ in serviceConfig.ExecStart = "${pkgs.trousers}/sbin/tcsd -f -c ${tcsdConf}"; }; - users.extraUsers = optionalAttrs (cfg.user == "tss") (singleton + users.users = optionalAttrs (cfg.user == "tss") (singleton { name = "tss"; group = "tss"; uid = config.ids.uids.tss; }); - users.extraGroups = optionalAttrs (cfg.group == "tss") (singleton + users.groups = optionalAttrs (cfg.group == "tss") (singleton { name = "tss"; gid = config.ids.gids.tss; }); diff --git a/nixos/modules/services/hardware/usbmuxd.nix b/nixos/modules/services/hardware/usbmuxd.nix index 7ebd49fa01c2..6a3f7cfd210d 100644 --- a/nixos/modules/services/hardware/usbmuxd.nix +++ b/nixos/modules/services/hardware/usbmuxd.nix @@ -43,13 +43,13 @@ in config = mkIf cfg.enable { - users.extraUsers = optional (cfg.user == defaultUserGroup) { + users.users = optional (cfg.user == defaultUserGroup) { name = cfg.user; description = "usbmuxd user"; group = cfg.group; }; - users.extraGroups = optional (cfg.group == defaultUserGroup) { + users.groups = optional (cfg.group == defaultUserGroup) { name = cfg.group; }; diff --git a/nixos/modules/services/logging/graylog.nix b/nixos/modules/services/logging/graylog.nix index 95f31829882f..74a7b3c9b470 100644 --- a/nixos/modules/services/logging/graylog.nix +++ b/nixos/modules/services/logging/graylog.nix @@ -127,7 +127,7 @@ in config = mkIf cfg.enable { - users.extraUsers = mkIf (cfg.user == "graylog") { + users.users = mkIf (cfg.user == "graylog") { graylog = { uid = config.ids.uids.graylog; description = "Graylog server daemon user"; diff --git a/nixos/modules/services/logging/journalwatch.nix b/nixos/modules/services/logging/journalwatch.nix index d49795fe2b77..adabc6459148 100644 --- a/nixos/modules/services/logging/journalwatch.nix +++ b/nixos/modules/services/logging/journalwatch.nix @@ -197,7 +197,7 @@ in { config = mkIf cfg.enable { - users.extraUsers.${user} = { + users.users.${user} = { isSystemUser = true; createHome = true; home = dataDir; diff --git a/nixos/modules/services/logging/logcheck.nix b/nixos/modules/services/logging/logcheck.nix index a4cab0c94cdc..1477d273d5ee 100644 --- a/nixos/modules/services/logging/logcheck.nix +++ b/nixos/modules/services/logging/logcheck.nix @@ -213,7 +213,7 @@ in mapAttrsToList writeIgnoreRule cfg.ignore ++ mapAttrsToList writeIgnoreCronRule cfg.ignoreCron; - users.extraUsers = optionalAttrs (cfg.user == "logcheck") (singleton + users.users = optionalAttrs (cfg.user == "logcheck") (singleton { name = "logcheck"; uid = config.ids.uids.logcheck; shell = "/bin/sh"; diff --git a/nixos/modules/services/mail/dovecot.nix b/nixos/modules/services/mail/dovecot.nix index 50477fdd25ba..a3eb1653df5b 100644 --- a/nixos/modules/services/mail/dovecot.nix +++ b/nixos/modules/services/mail/dovecot.nix @@ -309,7 +309,7 @@ in ++ optional cfg.enablePop3 "pop3" ++ optional cfg.enableLmtp "lmtp"; - users.extraUsers = [ + users.users = [ { name = "dovenull"; uid = config.ids.uids.dovenull2; description = "Dovecot user for untrusted logins"; @@ -328,7 +328,7 @@ in group = cfg.mailGroup; }); - users.extraGroups = optional (cfg.group == "dovecot2") + users.groups = optional (cfg.group == "dovecot2") { name = "dovecot2"; gid = config.ids.gids.dovecot2; } diff --git a/nixos/modules/services/mail/dspam.nix b/nixos/modules/services/mail/dspam.nix index 89076ff05462..167b5aeccc84 100644 --- a/nixos/modules/services/mail/dspam.nix +++ b/nixos/modules/services/mail/dspam.nix @@ -86,13 +86,13 @@ in { config = mkIf cfg.enable (mkMerge [ { - users.extraUsers = optionalAttrs (cfg.user == "dspam") (singleton + users.users = optionalAttrs (cfg.user == "dspam") (singleton { name = "dspam"; group = cfg.group; uid = config.ids.uids.dspam; }); - users.extraGroups = optionalAttrs (cfg.group == "dspam") (singleton + users.groups = optionalAttrs (cfg.group == "dspam") (singleton { name = "dspam"; gid = config.ids.gids.dspam; }); diff --git a/nixos/modules/services/mail/exim.nix b/nixos/modules/services/mail/exim.nix index f9ee3f909660..06c4b2811b3f 100644 --- a/nixos/modules/services/mail/exim.nix +++ b/nixos/modules/services/mail/exim.nix @@ -77,14 +77,14 @@ in systemPackages = [ exim ]; }; - users.extraUsers = singleton { + users.users = singleton { name = cfg.user; description = "Exim mail transfer agent user"; uid = config.ids.uids.exim; group = cfg.group; }; - users.extraGroups = singleton { + users.groups = singleton { name = cfg.group; gid = config.ids.gids.exim; }; diff --git a/nixos/modules/services/mail/mailhog.nix b/nixos/modules/services/mail/mailhog.nix index 206fb50d31a2..b78f4c8e0e66 100644 --- a/nixos/modules/services/mail/mailhog.nix +++ b/nixos/modules/services/mail/mailhog.nix @@ -24,7 +24,7 @@ in { config = mkIf cfg.enable { - users.extraUsers.mailhog = { + users.users.mailhog = { name = cfg.user; description = "MailHog service user"; }; diff --git a/nixos/modules/services/mail/mlmmj.nix b/nixos/modules/services/mail/mlmmj.nix index b6439b44fb5f..11565bc02f89 100644 --- a/nixos/modules/services/mail/mlmmj.nix +++ b/nixos/modules/services/mail/mlmmj.nix @@ -94,7 +94,7 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = cfg.user; description = "mlmmj user"; home = stateDir; @@ -104,7 +104,7 @@ in useDefaultShell = true; }; - users.extraGroups = singleton { + users.groups = singleton { name = cfg.group; gid = config.ids.gids.mlmmj; }; diff --git a/nixos/modules/services/mail/nullmailer.nix b/nixos/modules/services/mail/nullmailer.nix index 59cb512c115b..418c02af4b7f 100644 --- a/nixos/modules/services/mail/nullmailer.nix +++ b/nixos/modules/services/mail/nullmailer.nix @@ -201,13 +201,13 @@ with lib; }; users = { - extraUsers = singleton { + users = singleton { name = cfg.user; description = "Nullmailer relay-only mta user"; group = cfg.group; }; - extraGroups = singleton { + groups = singleton { name = cfg.group; }; }; diff --git a/nixos/modules/services/mail/opendkim.nix b/nixos/modules/services/mail/opendkim.nix index 59a8373843a1..7855efb46c73 100644 --- a/nixos/modules/services/mail/opendkim.nix +++ b/nixos/modules/services/mail/opendkim.nix @@ -88,13 +88,13 @@ in { config = mkIf cfg.enable { - users.extraUsers = optionalAttrs (cfg.user == "opendkim") (singleton + users.users = optionalAttrs (cfg.user == "opendkim") (singleton { name = "opendkim"; group = cfg.group; uid = config.ids.uids.opendkim; }); - users.extraGroups = optionalAttrs (cfg.group == "opendkim") (singleton + users.groups = optionalAttrs (cfg.group == "opendkim") (singleton { name = "opendkim"; gid = config.ids.gids.opendkim; }); diff --git a/nixos/modules/services/mail/opensmtpd.nix b/nixos/modules/services/mail/opensmtpd.nix index f9b890532ceb..4276552d4f03 100644 --- a/nixos/modules/services/mail/opensmtpd.nix +++ b/nixos/modules/services/mail/opensmtpd.nix @@ -83,12 +83,12 @@ in { ###### implementation config = mkIf cfg.enable { - users.extraGroups = { + users.groups = { smtpd.gid = config.ids.gids.smtpd; smtpq.gid = config.ids.gids.smtpq; }; - users.extraUsers = { + users.users = { smtpd = { description = "OpenSMTPD process user"; uid = config.ids.uids.smtpd; diff --git a/nixos/modules/services/mail/postfix.nix b/nixos/modules/services/mail/postfix.nix index 5ab331ac067f..33249aa3e554 100644 --- a/nixos/modules/services/mail/postfix.nix +++ b/nixos/modules/services/mail/postfix.nix @@ -616,14 +616,14 @@ in setgid = true; }; - users.extraUsers = optional (user == "postfix") + users.users = optional (user == "postfix") { name = "postfix"; description = "Postfix mail server user"; uid = config.ids.uids.postfix; group = group; }; - users.extraGroups = + users.groups = optional (group == "postfix") { name = group; gid = config.ids.gids.postfix; diff --git a/nixos/modules/services/mail/postgrey.nix b/nixos/modules/services/mail/postgrey.nix index d4ae25c066ac..241f75eae279 100644 --- a/nixos/modules/services/mail/postgrey.nix +++ b/nixos/modules/services/mail/postgrey.nix @@ -136,14 +136,14 @@ in { environment.systemPackages = [ pkgs.postgrey ]; users = { - extraUsers = { + users = { postgrey = { description = "Postgrey Daemon"; uid = config.ids.uids.postgrey; group = "postgrey"; }; }; - extraGroups = { + groups = { postgrey = { gid = config.ids.gids.postgrey; }; diff --git a/nixos/modules/services/mail/postsrsd.nix b/nixos/modules/services/mail/postsrsd.nix index a1af16ec9ac1..8f12a16906c5 100644 --- a/nixos/modules/services/mail/postsrsd.nix +++ b/nixos/modules/services/mail/postsrsd.nix @@ -90,13 +90,13 @@ in { services.postsrsd.domain = mkDefault config.networking.hostName; - users.extraUsers = optionalAttrs (cfg.user == "postsrsd") (singleton + users.users = optionalAttrs (cfg.user == "postsrsd") (singleton { name = "postsrsd"; group = cfg.group; uid = config.ids.uids.postsrsd; }); - users.extraGroups = optionalAttrs (cfg.group == "postsrsd") (singleton + users.groups = optionalAttrs (cfg.group == "postsrsd") (singleton { name = "postsrsd"; gid = config.ids.gids.postsrsd; }); diff --git a/nixos/modules/services/mail/rmilter.nix b/nixos/modules/services/mail/rmilter.nix index e17b7516bfff..7f38d7570132 100644 --- a/nixos/modules/services/mail/rmilter.nix +++ b/nixos/modules/services/mail/rmilter.nix @@ -194,14 +194,14 @@ in (mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = cfg.user; description = "rmilter daemon"; uid = config.ids.uids.rmilter; group = cfg.group; }; - users.extraGroups = singleton { + users.groups = singleton { name = cfg.group; gid = config.ids.gids.rmilter; }; @@ -238,12 +238,12 @@ in }) (mkIf (cfg.enable && cfg.rspamd.enable && rspamdCfg.enable) { - users.extraUsers.${cfg.user}.extraGroups = [ rspamdCfg.group ]; + users.users.${cfg.user}.extraGroups = [ rspamdCfg.group ]; }) (mkIf (cfg.enable && cfg.postfix.enable) { services.postfix.extraConfig = cfg.postfix.configFragment; - users.extraUsers.${postfixCfg.user}.extraGroups = [ cfg.group ]; + users.users.${postfixCfg.user}.extraGroups = [ cfg.group ]; }) ]; } diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix index 09fb587e74b5..b3dae60c2c7e 100644 --- a/nixos/modules/services/mail/rspamd.nix +++ b/nixos/modules/services/mail/rspamd.nix @@ -282,14 +282,14 @@ in # Allow users to run 'rspamc' and 'rspamadm'. environment.systemPackages = [ pkgs.rspamd ]; - users.extraUsers = singleton { + users.users = singleton { name = cfg.user; description = "rspamd daemon"; uid = config.ids.uids.rspamd; group = cfg.group; }; - users.extraGroups = singleton { + users.groups = singleton { name = cfg.group; gid = config.ids.gids.rspamd; }; diff --git a/nixos/modules/services/mail/spamassassin.nix b/nixos/modules/services/mail/spamassassin.nix index d483a8c3d67d..0c11ea431368 100644 --- a/nixos/modules/services/mail/spamassassin.nix +++ b/nixos/modules/services/mail/spamassassin.nix @@ -128,14 +128,14 @@ in systemPackages = [ pkgs.spamassassin ]; }; - users.extraUsers = singleton { + users.users = singleton { name = "spamd"; description = "Spam Assassin Daemon"; uid = config.ids.uids.spamd; group = "spamd"; }; - users.extraGroups = singleton { + users.groups = singleton { name = "spamd"; gid = config.ids.gids.spamd; }; diff --git a/nixos/modules/services/misc/airsonic.nix b/nixos/modules/services/misc/airsonic.nix index b92104787a56..083587b8ebb1 100644 --- a/nixos/modules/services/misc/airsonic.nix +++ b/nixos/modules/services/misc/airsonic.nix @@ -107,7 +107,7 @@ in { }; }; - users.extraUsers.airsonic = { + users.users.airsonic = { description = "Airsonic service user"; name = cfg.user; home = cfg.home; diff --git a/nixos/modules/services/misc/apache-kafka.nix b/nixos/modules/services/misc/apache-kafka.nix index 82fa1cc2e7e5..363ac4411e11 100644 --- a/nixos/modules/services/misc/apache-kafka.nix +++ b/nixos/modules/services/misc/apache-kafka.nix @@ -124,7 +124,7 @@ in { environment.systemPackages = [cfg.package]; - users.extraUsers = singleton { + users.users = singleton { name = "apache-kafka"; uid = config.ids.uids.apache-kafka; description = "Apache Kafka daemon user"; diff --git a/nixos/modules/services/misc/autorandr.nix b/nixos/modules/services/misc/autorandr.nix index 3020130ad1f6..4708e16e2a6c 100644 --- a/nixos/modules/services/misc/autorandr.nix +++ b/nixos/modules/services/misc/autorandr.nix @@ -12,6 +12,16 @@ in { services.autorandr = { enable = mkEnableOption "handling of hotplug and sleep events by autorandr"; + + defaultTarget = mkOption { + default = "default"; + type = types.str; + description = '' + Fallback if no monitor layout can be detected. See the docs + (https://github.com/phillipberndt/autorandr/blob/v1.0/README.md#how-to-use) + for further reference. + ''; + }; }; }; @@ -22,13 +32,21 @@ in { environment.systemPackages = [ pkgs.autorandr ]; - systemd.packages = [ pkgs.autorandr ]; - systemd.services.autorandr = { wantedBy = [ "sleep.target" ]; + description = "Autorandr execution hook"; + after = [ "sleep.target" ]; + + serviceConfig = { + StartLimitInterval = 5; + StartLimitBurst = 1; + ExecStart = "${pkgs.autorandr}/bin/autorandr --batch --change --default ${cfg.defaultTarget}"; + Type = "oneshot"; + RemainAfterExit = false; + }; }; }; - meta.maintainers = with maintainers; [ gnidorah ]; + meta.maintainers = with maintainers; [ gnidorah ma27 ]; } diff --git a/nixos/modules/services/misc/bepasty.nix b/nixos/modules/services/misc/bepasty.nix index c499e428af35..62835c194e42 100644 --- a/nixos/modules/services/misc/bepasty.nix +++ b/nixos/modules/services/misc/bepasty.nix @@ -168,14 +168,14 @@ in }) ) cfg.servers; - users.extraUsers = [{ + users.users = [{ uid = config.ids.uids.bepasty; name = user; group = group; home = default_home; }]; - users.extraGroups = [{ + users.groups = [{ name = group; gid = config.ids.gids.bepasty; }]; diff --git a/nixos/modules/services/misc/calibre-server.nix b/nixos/modules/services/misc/calibre-server.nix index 6b19f780ec0c..84c04f403d3a 100644 --- a/nixos/modules/services/misc/calibre-server.nix +++ b/nixos/modules/services/misc/calibre-server.nix @@ -49,12 +49,12 @@ in environment.systemPackages = [ pkgs.calibre ]; - users.extraUsers.calibre-server = { + users.users.calibre-server = { uid = config.ids.uids.calibre-server; group = "calibre-server"; }; - users.extraGroups.calibre-server = { + users.groups.calibre-server = { gid = config.ids.gids.calibre-server; }; diff --git a/nixos/modules/services/misc/cfdyndns.nix b/nixos/modules/services/misc/cfdyndns.nix index 69a33d0b8c1b..dcf416022734 100644 --- a/nixos/modules/services/misc/cfdyndns.nix +++ b/nixos/modules/services/misc/cfdyndns.nix @@ -54,14 +54,14 @@ in }; }; - users.extraUsers = { + users.users = { cfdyndns = { group = "cfdyndns"; uid = config.ids.uids.cfdyndns; }; }; - users.extraGroups = { + users.groups = { cfdyndns = { gid = config.ids.gids.cfdyndns; }; diff --git a/nixos/modules/services/misc/cgminer.nix b/nixos/modules/services/misc/cgminer.nix index d5071d8ff767..b1cf5a7d1104 100644 --- a/nixos/modules/services/misc/cgminer.nix +++ b/nixos/modules/services/misc/cgminer.nix @@ -110,7 +110,7 @@ in config = mkIf config.services.cgminer.enable { - users.extraUsers = optionalAttrs (cfg.user == "cgminer") (singleton + users.users = optionalAttrs (cfg.user == "cgminer") (singleton { name = "cgminer"; uid = config.ids.uids.cgminer; description = "Cgminer user"; diff --git a/nixos/modules/services/misc/couchpotato.nix b/nixos/modules/services/misc/couchpotato.nix index 496487622351..70aa895f76d8 100644 --- a/nixos/modules/services/misc/couchpotato.nix +++ b/nixos/modules/services/misc/couchpotato.nix @@ -34,7 +34,7 @@ in }; }; - users.extraUsers = singleton + users.users = singleton { name = "couchpotato"; group = "couchpotato"; home = "/var/lib/couchpotato/"; @@ -42,7 +42,7 @@ in uid = config.ids.uids.couchpotato; }; - users.extraGroups = singleton + users.groups = singleton { name = "couchpotato"; gid = config.ids.gids.couchpotato; }; diff --git a/nixos/modules/services/misc/dictd.nix b/nixos/modules/services/misc/dictd.nix index 7e3b6431a133..8d3e294622d1 100644 --- a/nixos/modules/services/misc/dictd.nix +++ b/nixos/modules/services/misc/dictd.nix @@ -45,7 +45,7 @@ in # get the command line client on system path to make some use of the service environment.systemPackages = [ pkgs.dict ]; - users.extraUsers = singleton + users.users = singleton { name = "dictd"; group = "dictd"; description = "DICT.org dictd server"; @@ -53,7 +53,7 @@ in uid = config.ids.uids.dictd; }; - users.extraGroups = singleton + users.groups = singleton { name = "dictd"; gid = config.ids.gids.dictd; }; diff --git a/nixos/modules/services/misc/disnix.nix b/nixos/modules/services/misc/disnix.nix index e4517c636e88..b28995a09115 100644 --- a/nixos/modules/services/misc/disnix.nix +++ b/nixos/modules/services/misc/disnix.nix @@ -71,7 +71,7 @@ in ++ optional cfg.useWebServiceInterface "${pkgs.dbus_java}/share/java/dbus.jar"; services.tomcat.webapps = optional cfg.useWebServiceInterface pkgs.DisnixWebService; - users.extraGroups = singleton + users.groups = singleton { name = "disnix"; gid = config.ids.gids.disnix; }; diff --git a/nixos/modules/services/misc/docker-registry.nix b/nixos/modules/services/misc/docker-registry.nix index f628da4ac4c0..9a3966ab30aa 100644 --- a/nixos/modules/services/misc/docker-registry.nix +++ b/nixos/modules/services/misc/docker-registry.nix @@ -140,7 +140,7 @@ in { startAt = optional cfg.enableGarbageCollect cfg.garbageCollectDates; }; - users.extraUsers.docker-registry = { + users.users.docker-registry = { createHome = true; home = cfg.storagePath; }; diff --git a/nixos/modules/services/misc/emby.nix b/nixos/modules/services/misc/emby.nix index e295f0f930e1..b1968784af0f 100644 --- a/nixos/modules/services/misc/emby.nix +++ b/nixos/modules/services/misc/emby.nix @@ -54,14 +54,14 @@ in }; }; - users.extraUsers = mkIf (cfg.user == "emby") { + users.users = mkIf (cfg.user == "emby") { emby = { group = cfg.group; uid = config.ids.uids.emby; }; }; - users.extraGroups = mkIf (cfg.group == "emby") { + users.groups = mkIf (cfg.group == "emby") { emby = { gid = config.ids.gids.emby; }; diff --git a/nixos/modules/services/misc/errbot.nix b/nixos/modules/services/misc/errbot.nix index cb2fa6776240..ac6ba2181de2 100644 --- a/nixos/modules/services/misc/errbot.nix +++ b/nixos/modules/services/misc/errbot.nix @@ -76,8 +76,8 @@ in { }; config = mkIf (cfg.instances != {}) { - users.extraUsers.errbot.group = "errbot"; - users.extraGroups.errbot = {}; + users.users.errbot.group = "errbot"; + users.groups.errbot = {}; systemd.services = mapAttrs' (name: instanceCfg: nameValuePair "errbot-${name}" ( let diff --git a/nixos/modules/services/misc/etcd.nix b/nixos/modules/services/misc/etcd.nix index 7c91462883f1..2d1893dae64b 100644 --- a/nixos/modules/services/misc/etcd.nix +++ b/nixos/modules/services/misc/etcd.nix @@ -188,7 +188,7 @@ in { environment.systemPackages = [ pkgs.etcdctl ]; - users.extraUsers = singleton { + users.users = singleton { name = "etcd"; uid = config.ids.uids.etcd; description = "Etcd daemon user"; diff --git a/nixos/modules/services/misc/exhibitor.nix b/nixos/modules/services/misc/exhibitor.nix index 600bd780e7b0..685e652c0ba0 100644 --- a/nixos/modules/services/misc/exhibitor.nix +++ b/nixos/modules/services/misc/exhibitor.nix @@ -408,7 +408,7 @@ in chmod -R u+w ${cfg.baseDir}/zookeeper/conf ''; }; - users.extraUsers = singleton { + users.users = singleton { name = "zookeeper"; uid = config.ids.uids.zookeeper; description = "Zookeeper daemon user"; diff --git a/nixos/modules/services/misc/felix.nix b/nixos/modules/services/misc/felix.nix index d6ad9dcaebc2..1c5ece868258 100644 --- a/nixos/modules/services/misc/felix.nix +++ b/nixos/modules/services/misc/felix.nix @@ -47,12 +47,12 @@ in ###### implementation config = mkIf cfg.enable { - users.extraGroups = singleton + users.groups = singleton { name = "osgi"; gid = config.ids.gids.osgi; }; - users.extraUsers = singleton + users.users = singleton { name = "osgi"; uid = config.ids.uids.osgi; description = "OSGi user"; diff --git a/nixos/modules/services/misc/folding-at-home.nix b/nixos/modules/services/misc/folding-at-home.nix index 164221cbab7f..122c89ce0680 100644 --- a/nixos/modules/services/misc/folding-at-home.nix +++ b/nixos/modules/services/misc/folding-at-home.nix @@ -42,7 +42,7 @@ in { config = mkIf cfg.enable { - users.extraUsers = singleton + users.users = singleton { name = fahUser; uid = config.ids.uids.foldingathome; description = "Folding@Home user"; diff --git a/nixos/modules/services/misc/gammu-smsd.nix b/nixos/modules/services/misc/gammu-smsd.nix index 2d406b634437..3057d7fd1a09 100644 --- a/nixos/modules/services/misc/gammu-smsd.nix +++ b/nixos/modules/services/misc/gammu-smsd.nix @@ -200,7 +200,7 @@ in { }; config = mkIf cfg.enable { - users.extraUsers.${cfg.user} = { + users.users.${cfg.user} = { description = "gammu-smsd user"; uid = config.ids.uids.gammu-smsd; extraGroups = [ "${cfg.device.group}" ]; diff --git a/nixos/modules/services/misc/geoip-updater.nix b/nixos/modules/services/misc/geoip-updater.nix index e0b9df96f8e8..baf0a8d73d19 100644 --- a/nixos/modules/services/misc/geoip-updater.nix +++ b/nixos/modules/services/misc/geoip-updater.nix @@ -251,7 +251,7 @@ in } ]; - users.extraUsers.geoip = { + users.users.geoip = { group = "root"; description = "GeoIP database updater"; uid = config.ids.uids.geoip; diff --git a/nixos/modules/services/misc/gitea.nix b/nixos/modules/services/misc/gitea.nix index 46efc1df12eb..5d664728e0b5 100644 --- a/nixos/modules/services/misc/gitea.nix +++ b/nixos/modules/services/misc/gitea.nix @@ -337,7 +337,7 @@ in }; users = mkIf (cfg.user == "gitea") { - extraUsers.gitea = { + users.gitea = { description = "Gitea Service"; home = cfg.stateDir; createHome = true; diff --git a/nixos/modules/services/misc/gitit.nix b/nixos/modules/services/misc/gitit.nix index 94a98e0335df..0025d96bd37b 100644 --- a/nixos/modules/services/misc/gitit.nix +++ b/nixos/modules/services/misc/gitit.nix @@ -645,15 +645,15 @@ in config = mkIf cfg.enable { - users.extraUsers.gitit = { - group = config.users.extraGroups.gitit.name; + users.users.gitit = { + group = config.users.groups.gitit.name; description = "Gitit user"; home = homeDir; createHome = true; uid = config.ids.uids.gitit; }; - users.extraGroups.gitit.gid = config.ids.gids.gitit; + users.groups.gitit.gid = config.ids.gids.gitit; systemd.services.gitit = let uid = toString config.ids.uids.gitit; @@ -715,8 +715,8 @@ NAMED ''; serviceConfig = { - User = config.users.extraUsers.gitit.name; - Group = config.users.extraGroups.gitit.name; + User = config.users.users.gitit.name; + Group = config.users.groups.gitit.name; ExecStart = with cfg; gititSh haskellPackages extraPackages; }; }; diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix index e80abf96da48..b09f0408e102 100644 --- a/nixos/modules/services/misc/gitlab.nix +++ b/nixos/modules/services/misc/gitlab.nix @@ -444,7 +444,7 @@ in { # Use postfix to send out mails. services.postfix.enable = mkDefault true; - users.extraUsers = [ + users.users = [ { name = cfg.user; group = cfg.group; home = "${cfg.statePath}/home"; @@ -453,7 +453,7 @@ in { } ]; - users.extraGroups = [ + users.groups = [ { name = cfg.group; gid = config.ids.gids.gitlab; } diff --git a/nixos/modules/services/misc/gitolite.nix b/nixos/modules/services/misc/gitolite.nix index 6e60316d000c..b9c2a966e6f5 100644 --- a/nixos/modules/services/misc/gitolite.nix +++ b/nixos/modules/services/misc/gitolite.nix @@ -140,7 +140,7 @@ in push( @{$RC{ENABLE}}, 'git-annex-shell ua'); ''; - users.extraUsers.${cfg.user} = { + users.users.${cfg.user} = { description = "Gitolite user"; home = cfg.dataDir; createHome = true; @@ -148,7 +148,7 @@ in group = cfg.group; useDefaultShell = true; }; - users.extraGroups."${cfg.group}".gid = config.ids.gids.gitolite; + users.groups."${cfg.group}".gid = config.ids.gids.gitolite; systemd.services."gitolite-init" = { description = "Gitolite initialization"; diff --git a/nixos/modules/services/misc/gogs.nix b/nixos/modules/services/misc/gogs.nix index ba744d37e71c..ee99967c261b 100644 --- a/nixos/modules/services/misc/gogs.nix +++ b/nixos/modules/services/misc/gogs.nix @@ -254,7 +254,7 @@ in }; users = mkIf (cfg.user == "gogs") { - extraUsers.gogs = { + users.gogs = { description = "Go Git Service"; uid = config.ids.uids.gogs; group = "gogs"; @@ -262,7 +262,7 @@ in createHome = true; shell = pkgs.bash; }; - extraGroups.gogs.gid = config.ids.gids.gogs; + groups.gogs.gid = config.ids.gids.gogs; }; warnings = optional (cfg.database.password != "") diff --git a/nixos/modules/services/misc/gollum.nix b/nixos/modules/services/misc/gollum.nix index 0888221ab62f..d1823bc6d4df 100644 --- a/nixos/modules/services/misc/gollum.nix +++ b/nixos/modules/services/misc/gollum.nix @@ -93,8 +93,8 @@ in ''; serviceConfig = { - User = config.users.extraUsers.gollum.name; - Group = config.users.extraGroups.gollum.name; + User = config.users.users.gollum.name; + Group = config.users.groups.gollum.name; PermissionsStartOnly = true; ExecStart = '' ${pkgs.gollum}/bin/gollum \ diff --git a/nixos/modules/services/misc/gpsd.nix b/nixos/modules/services/misc/gpsd.nix index a4a4c7b5d937..3bfcb636a3c6 100644 --- a/nixos/modules/services/misc/gpsd.nix +++ b/nixos/modules/services/misc/gpsd.nix @@ -53,6 +53,14 @@ in ''; }; + nowait = mkOption { + type = types.bool; + default = false; + description = '' + don't wait for client connects to poll GPS + ''; + }; + port = mkOption { type = types.int; default = 2947; @@ -78,14 +86,14 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton + users.users = singleton { name = "gpsd"; inherit uid; description = "gpsd daemon user"; home = "/var/empty"; }; - users.extraGroups = singleton + users.groups = singleton { name = "gpsd"; inherit gid; }; @@ -99,7 +107,8 @@ in ExecStart = '' ${pkgs.gpsd}/sbin/gpsd -D "${toString cfg.debugLevel}" \ -S "${toString cfg.port}" \ - ${if cfg.readonly then "-b" else ""} \ + ${optionalString cfg.readonly "-b"} \ + ${optionalString cfg.nowait "-n"} \ "${cfg.device}" ''; }; diff --git a/nixos/modules/services/misc/home-assistant.nix b/nixos/modules/services/misc/home-assistant.nix index 05555353f207..fdcfe6bc2b8e 100644 --- a/nixos/modules/services/misc/home-assistant.nix +++ b/nixos/modules/services/misc/home-assistant.nix @@ -170,13 +170,13 @@ in { after = wants; }; - users.extraUsers.hass = { + users.users.hass = { home = cfg.configDir; createHome = true; group = "hass"; uid = config.ids.uids.hass; }; - users.extraGroups.hass.gid = config.ids.gids.hass; + users.groups.hass.gid = config.ids.gids.hass; }; } diff --git a/nixos/modules/services/misc/ihaskell.nix b/nixos/modules/services/misc/ihaskell.nix index 6da9cc8c47e6..11597706d0d1 100644 --- a/nixos/modules/services/misc/ihaskell.nix +++ b/nixos/modules/services/misc/ihaskell.nix @@ -38,23 +38,23 @@ in config = mkIf cfg.enable { - users.extraUsers.ihaskell = { - group = config.users.extraGroups.ihaskell.name; + users.users.ihaskell = { + group = config.users.groups.ihaskell.name; description = "IHaskell user"; home = "/var/lib/ihaskell"; createHome = true; uid = config.ids.uids.ihaskell; }; - users.extraGroups.ihaskell.gid = config.ids.gids.ihaskell; + users.groups.ihaskell.gid = config.ids.gids.ihaskell; systemd.services.ihaskell = { description = "IHaskell notebook instance"; wantedBy = [ "multi-user.target" ]; after = [ "network.target" ]; serviceConfig = { - User = config.users.extraUsers.ihaskell.name; - Group = config.users.extraGroups.ihaskell.name; + User = config.users.users.ihaskell.name; + Group = config.users.groups.ihaskell.name; ExecStart = "${pkgs.runtimeShell} -c \"cd $HOME;${ihaskell}/bin/ihaskell-notebook\""; }; }; diff --git a/nixos/modules/services/misc/jackett.nix b/nixos/modules/services/misc/jackett.nix index 87a41ee70b54..db72d36f2ac7 100644 --- a/nixos/modules/services/misc/jackett.nix +++ b/nixos/modules/services/misc/jackett.nix @@ -36,12 +36,12 @@ in }; }; - users.extraUsers.jackett = { + users.users.jackett = { uid = config.ids.uids.jackett; home = "/var/lib/jackett"; group = "jackett"; }; - users.extraGroups.jackett.gid = config.ids.gids.jackett; + users.groups.jackett.gid = config.ids.gids.jackett; }; } diff --git a/nixos/modules/services/misc/mathics.nix b/nixos/modules/services/misc/mathics.nix index 50715858881a..c588a30d76cd 100644 --- a/nixos/modules/services/misc/mathics.nix +++ b/nixos/modules/services/misc/mathics.nix @@ -26,23 +26,23 @@ in { config = mkIf cfg.enable { - users.extraUsers.mathics = { - group = config.users.extraGroups.mathics.name; + users.users.mathics = { + group = config.users.groups.mathics.name; description = "Mathics user"; home = "/var/lib/mathics"; createHome = true; uid = config.ids.uids.mathics; }; - users.extraGroups.mathics.gid = config.ids.gids.mathics; + users.groups.mathics.gid = config.ids.gids.mathics; systemd.services.mathics = { description = "Mathics notebook server"; wantedBy = [ "multi-user.target" ]; after = [ "network.target" ]; serviceConfig = { - User = config.users.extraUsers.mathics.name; - Group = config.users.extraGroups.mathics.name; + User = config.users.users.mathics.name; + Group = config.users.groups.mathics.name; ExecStart = concatStringsSep " " [ "${pkgs.mathics}/bin/mathicsserver" "--port" (toString cfg.port) diff --git a/nixos/modules/services/misc/matrix-synapse.nix b/nixos/modules/services/misc/matrix-synapse.nix index f7441988b272..3e3de9114708 100644 --- a/nixos/modules/services/misc/matrix-synapse.nix +++ b/nixos/modules/services/misc/matrix-synapse.nix @@ -635,7 +635,7 @@ in { }; config = mkIf cfg.enable { - users.extraUsers = [ + users.users = [ { name = "matrix-synapse"; group = "matrix-synapse"; home = cfg.dataDir; @@ -644,7 +644,7 @@ in { uid = config.ids.uids.matrix-synapse; } ]; - users.extraGroups = [ + users.groups = [ { name = "matrix-synapse"; gid = config.ids.gids.matrix-synapse; } ]; diff --git a/nixos/modules/services/misc/mediatomb.nix b/nixos/modules/services/misc/mediatomb.nix index 40ec2831ff09..5c1977d28deb 100644 --- a/nixos/modules/services/misc/mediatomb.nix +++ b/nixos/modules/services/misc/mediatomb.nix @@ -267,12 +267,12 @@ in { serviceConfig.User = "${cfg.user}"; }; - users.extraGroups = optionalAttrs (cfg.group == "mediatomb") (singleton { + users.groups = optionalAttrs (cfg.group == "mediatomb") (singleton { name = "mediatomb"; gid = gid; }); - users.extraUsers = optionalAttrs (cfg.user == "mediatomb") (singleton { + users.users = optionalAttrs (cfg.user == "mediatomb") (singleton { name = "mediatomb"; isSystemUser = true; group = cfg.group; diff --git a/nixos/modules/services/misc/nix-daemon.nix b/nixos/modules/services/misc/nix-daemon.nix index 0ee105e4c6f1..e64df8dc7d2d 100644 --- a/nixos/modules/services/misc/nix-daemon.nix +++ b/nixos/modules/services/misc/nix-daemon.nix @@ -131,10 +131,10 @@ in description = " If set, Nix will perform builds in a sandboxed environment that it will set up automatically for each build. This prevents impurities - in builds by disallowing access to dependencies outside of the Nix - store by using network and mount namespaces in a chroot environment. - This isn't enabled by default for possible performance impacts due to - the initial setup time of a sandbox for each build. It doesn't affect + in builds by disallowing access to dependencies outside of the Nix + store by using network and mount namespaces in a chroot environment. + This isn't enabled by default for possible performance impacts due to + the initial setup time of a sandbox for each build. It doesn't affect derivation hashes, so changing this option will not trigger a rebuild of packages. "; @@ -450,7 +450,7 @@ in nix.nrBuildUsers = mkDefault (lib.max 32 cfg.maxJobs); - users.extraUsers = nixbldUsers; + users.users = nixbldUsers; services.xserver.displayManager.hiddenUsers = map ({ name, ... }: name) nixbldUsers; diff --git a/nixos/modules/services/misc/nix-ssh-serve.nix b/nixos/modules/services/misc/nix-ssh-serve.nix index 5bd9cf9086f1..87ed7f0a61b9 100644 --- a/nixos/modules/services/misc/nix-ssh-serve.nix +++ b/nixos/modules/services/misc/nix-ssh-serve.nix @@ -36,7 +36,7 @@ in { config = mkIf cfg.enable { - users.extraUsers.nix-ssh = { + users.users.nix-ssh = { description = "Nix SSH store user"; uid = config.ids.uids.nix-ssh; useDefaultShell = true; @@ -55,7 +55,7 @@ in { Match All ''; - users.extraUsers.nix-ssh.openssh.authorizedKeys.keys = cfg.keys; + users.users.nix-ssh.openssh.authorizedKeys.keys = cfg.keys; }; } diff --git a/nixos/modules/services/misc/nzbget.nix b/nixos/modules/services/misc/nzbget.nix index a186d57ceba2..f79a04a1d748 100644 --- a/nixos/modules/services/misc/nzbget.nix +++ b/nixos/modules/services/misc/nzbget.nix @@ -86,14 +86,14 @@ let }; }; - users.extraUsers = mkIf (cfg.user == "nzbget") { + users.users = mkIf (cfg.user == "nzbget") { nzbget = { group = cfg.group; uid = config.ids.uids.nzbget; }; }; - users.extraGroups = mkIf (cfg.group == "nzbget") { + users.groups = mkIf (cfg.group == "nzbget") { nzbget = { gid = config.ids.gids.nzbget; }; diff --git a/nixos/modules/services/misc/octoprint.nix b/nixos/modules/services/misc/octoprint.nix index 6883993a893b..baa7c3ade52e 100644 --- a/nixos/modules/services/misc/octoprint.nix +++ b/nixos/modules/services/misc/octoprint.nix @@ -86,13 +86,13 @@ in config = mkIf cfg.enable { - users.extraUsers = optionalAttrs (cfg.user == "octoprint") (singleton + users.users = optionalAttrs (cfg.user == "octoprint") (singleton { name = "octoprint"; group = cfg.group; uid = config.ids.uids.octoprint; }); - users.extraGroups = optionalAttrs (cfg.group == "octoprint") (singleton + users.groups = optionalAttrs (cfg.group == "octoprint") (singleton { name = "octoprint"; gid = config.ids.gids.octoprint; }); diff --git a/nixos/modules/services/misc/osrm.nix b/nixos/modules/services/misc/osrm.nix index 7ec8b15906fc..f89f37ccd9df 100644 --- a/nixos/modules/services/misc/osrm.nix +++ b/nixos/modules/services/misc/osrm.nix @@ -69,7 +69,7 @@ in wantedBy = [ "multi-user.target" ]; serviceConfig = { - User = config.users.extraUsers.osrm.name; + User = config.users.users.osrm.name; ExecStart = '' ${pkgs.osrm-backend}/bin/osrm-routed \ --ip ${cfg.address} \ diff --git a/nixos/modules/services/misc/plex.nix b/nixos/modules/services/misc/plex.nix index 46221ace3084..85f1d4a85562 100644 --- a/nixos/modules/services/misc/plex.nix +++ b/nixos/modules/services/misc/plex.nix @@ -157,14 +157,14 @@ in allowedUDPPorts = [ 1900 5353 32410 32412 32413 32414 ]; }; - users.extraUsers = mkIf (cfg.user == "plex") { + users.users = mkIf (cfg.user == "plex") { plex = { group = cfg.group; uid = config.ids.uids.plex; }; }; - users.extraGroups = mkIf (cfg.group == "plex") { + users.groups = mkIf (cfg.group == "plex") { plex = { gid = config.ids.gids.plex; }; diff --git a/nixos/modules/services/misc/plexpy.nix b/nixos/modules/services/misc/plexpy.nix index df9f12581247..2a589fdfb27f 100644 --- a/nixos/modules/services/misc/plexpy.nix +++ b/nixos/modules/services/misc/plexpy.nix @@ -74,7 +74,7 @@ in }; }; - users.extraUsers = mkIf (cfg.user == "plexpy") { + users.users = mkIf (cfg.user == "plexpy") { plexpy = { group = cfg.group; uid = config.ids.uids.plexpy; }; }; }; diff --git a/nixos/modules/services/misc/pykms.nix b/nixos/modules/services/misc/pykms.nix index 897e856e2a2d..a11296e1bd02 100644 --- a/nixos/modules/services/misc/pykms.nix +++ b/nixos/modules/services/misc/pykms.nix @@ -73,7 +73,7 @@ in { }; users = { - extraUsers.pykms = { + users.pykms = { name = "pykms"; group = "pykms"; home = home; @@ -82,7 +82,7 @@ in { description = "PyKMS daemon user"; }; - extraGroups.pykms = { + groups.pykms = { gid = config.ids.gids.pykms; }; }; diff --git a/nixos/modules/services/misc/radarr.nix b/nixos/modules/services/misc/radarr.nix index 245ad9f9a6df..7738eacc6ae9 100644 --- a/nixos/modules/services/misc/radarr.nix +++ b/nixos/modules/services/misc/radarr.nix @@ -36,12 +36,12 @@ in }; }; - users.extraUsers.radarr = { + users.users.radarr = { uid = config.ids.uids.radarr; home = "/var/lib/radarr"; group = "radarr"; }; - users.extraGroups.radarr.gid = config.ids.gids.radarr; + users.groups.radarr.gid = config.ids.gids.radarr; }; } diff --git a/nixos/modules/services/misc/redmine.nix b/nixos/modules/services/misc/redmine.nix index 3997b3f0dca0..9a9424449f80 100644 --- a/nixos/modules/services/misc/redmine.nix +++ b/nixos/modules/services/misc/redmine.nix @@ -128,13 +128,13 @@ in { } ]; - users.extraUsers = [ + users.users = [ { name = "redmine"; group = "redmine"; uid = config.ids.uids.redmine; } ]; - users.extraGroups = [ + users.groups = [ { name = "redmine"; gid = config.ids.gids.redmine; } ]; diff --git a/nixos/modules/services/misc/ripple-data-api.nix b/nixos/modules/services/misc/ripple-data-api.nix index dbca56b13335..042b496d35ee 100644 --- a/nixos/modules/services/misc/ripple-data-api.nix +++ b/nixos/modules/services/misc/ripple-data-api.nix @@ -185,7 +185,7 @@ in { ]; }; - users.extraUsers = singleton + users.users = singleton { name = "ripple-data-api"; description = "Ripple data api user"; uid = config.ids.uids.ripple-data-api; diff --git a/nixos/modules/services/misc/rippled.nix b/nixos/modules/services/misc/rippled.nix index 8bcf35a8ad38..9d9a0ba44da5 100644 --- a/nixos/modules/services/misc/rippled.nix +++ b/nixos/modules/services/misc/rippled.nix @@ -406,7 +406,7 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton + users.users = singleton { name = "rippled"; description = "Ripple server user"; uid = config.ids.uids.rippled; diff --git a/nixos/modules/services/misc/serviio.nix b/nixos/modules/services/misc/serviio.nix index a6612e9c6adb..8808f2d21931 100644 --- a/nixos/modules/services/misc/serviio.nix +++ b/nixos/modules/services/misc/serviio.nix @@ -63,7 +63,7 @@ in { }; }; - users.extraUsers = [ + users.users = [ { name = "serviio"; group = "serviio"; @@ -74,7 +74,7 @@ in { } ]; - users.extraGroups = [ + users.groups = [ { name = "serviio";} ]; diff --git a/nixos/modules/services/misc/siproxd.nix b/nixos/modules/services/misc/siproxd.nix index 9e8fb6c228f2..dcaf73aca448 100644 --- a/nixos/modules/services/misc/siproxd.nix +++ b/nixos/modules/services/misc/siproxd.nix @@ -161,7 +161,7 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = "siproxyd"; uid = config.ids.uids.siproxd; }; diff --git a/nixos/modules/services/misc/sonarr.nix b/nixos/modules/services/misc/sonarr.nix index ecde2c33bfa9..edba4e6c23eb 100644 --- a/nixos/modules/services/misc/sonarr.nix +++ b/nixos/modules/services/misc/sonarr.nix @@ -36,12 +36,12 @@ in }; }; - users.extraUsers.sonarr = { + users.users.sonarr = { uid = config.ids.uids.sonarr; home = "/var/lib/sonarr"; group = "sonarr"; }; - users.extraGroups.sonarr.gid = config.ids.gids.sonarr; + users.groups.sonarr.gid = config.ids.gids.sonarr; }; } diff --git a/nixos/modules/services/misc/subsonic.nix b/nixos/modules/services/misc/subsonic.nix index c2efd53d413a..1612b197f35f 100644 --- a/nixos/modules/services/misc/subsonic.nix +++ b/nixos/modules/services/misc/subsonic.nix @@ -130,7 +130,7 @@ let cfg = config.services.subsonic; in { ! [ -e "${cfg.home}" ] && [ -d "$oldHome" ] && [ $(${pkgs.coreutils}/bin/stat -c %u "$oldHome") -eq \ - ${toString config.users.extraUsers.subsonic.uid} ]; then + ${toString config.users.users.subsonic.uid} ]; then logger Moving "$oldHome" to "${cfg.home}" ${pkgs.coreutils}/bin/mv -T "$oldHome" "${cfg.home}" fi @@ -152,7 +152,7 @@ let cfg = config.services.subsonic; in { }; }; - users.extraUsers.subsonic = { + users.users.subsonic = { description = "Subsonic daemon user"; home = cfg.home; createHome = true; @@ -160,6 +160,6 @@ let cfg = config.services.subsonic; in { uid = config.ids.uids.subsonic; }; - users.extraGroups.subsonic.gid = config.ids.gids.subsonic; + users.groups.subsonic.gid = config.ids.gids.subsonic; }; } diff --git a/nixos/modules/services/misc/uhub.nix b/nixos/modules/services/misc/uhub.nix index 15071202b9c2..005951b9231e 100644 --- a/nixos/modules/services/misc/uhub.nix +++ b/nixos/modules/services/misc/uhub.nix @@ -161,11 +161,11 @@ in config = mkIf cfg.enable { users = { - extraUsers = singleton { + users = singleton { name = "uhub"; uid = config.ids.uids.uhub; }; - extraGroups = singleton { + groups = singleton { name = "uhub"; gid = config.ids.gids.uhub; }; diff --git a/nixos/modules/services/misc/zookeeper.nix b/nixos/modules/services/misc/zookeeper.nix index 91539592511c..cb7cc97d5a5c 100644 --- a/nixos/modules/services/misc/zookeeper.nix +++ b/nixos/modules/services/misc/zookeeper.nix @@ -144,7 +144,7 @@ in { ''; }; - users.extraUsers = singleton { + users.users = singleton { name = "zookeeper"; uid = config.ids.uids.zookeeper; description = "Zookeeper daemon user"; diff --git a/nixos/modules/services/monitoring/bosun.nix b/nixos/modules/services/monitoring/bosun.nix index 496838a131ba..8bf741adb6e3 100644 --- a/nixos/modules/services/monitoring/bosun.nix +++ b/nixos/modules/services/monitoring/bosun.nix @@ -153,13 +153,13 @@ in { }; }; - users.extraUsers.bosun = { + users.users.bosun = { description = "bosun user"; group = "bosun"; uid = config.ids.uids.bosun; }; - users.extraGroups.bosun.gid = config.ids.gids.bosun; + users.groups.bosun.gid = config.ids.gids.bosun; }; diff --git a/nixos/modules/services/monitoring/collectd.nix b/nixos/modules/services/monitoring/collectd.nix index dfbac3446e03..6606980cdad8 100644 --- a/nixos/modules/services/monitoring/collectd.nix +++ b/nixos/modules/services/monitoring/collectd.nix @@ -97,7 +97,7 @@ in { ''; }; - users.extraUsers = optional (cfg.user == "collectd") { + users.users = optional (cfg.user == "collectd") { name = "collectd"; }; }; diff --git a/nixos/modules/services/monitoring/dd-agent/dd-agent.nix b/nixos/modules/services/monitoring/dd-agent/dd-agent.nix index 6367c8245f71..cf65b6c28cf2 100644 --- a/nixos/modules/services/monitoring/dd-agent/dd-agent.nix +++ b/nixos/modules/services/monitoring/dd-agent/dd-agent.nix @@ -178,7 +178,7 @@ in { config = mkIf cfg.enable { environment.systemPackages = [ pkgs."dd-agent" pkgs.sysstat pkgs.procps ]; - users.extraUsers.datadog = { + users.users.datadog = { description = "Datadog Agent User"; uid = config.ids.uids.datadog; group = "datadog"; @@ -186,7 +186,7 @@ in { createHome = true; }; - users.extraGroups.datadog.gid = config.ids.gids.datadog; + users.groups.datadog.gid = config.ids.gids.datadog; systemd.services.dd-agent = { description = "Datadog agent monitor"; diff --git a/nixos/modules/services/monitoring/fusion-inventory.nix b/nixos/modules/services/monitoring/fusion-inventory.nix index c3b869e00880..9c976c65ea49 100644 --- a/nixos/modules/services/monitoring/fusion-inventory.nix +++ b/nixos/modules/services/monitoring/fusion-inventory.nix @@ -46,7 +46,7 @@ in { config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = "fusion-inventory"; description = "FusionInventory user"; }; diff --git a/nixos/modules/services/monitoring/grafana.nix b/nixos/modules/services/monitoring/grafana.nix index eceb91525db4..3e801f9b838d 100644 --- a/nixos/modules/services/monitoring/grafana.nix +++ b/nixos/modules/services/monitoring/grafana.nix @@ -265,7 +265,7 @@ in { ''; }; - users.extraUsers.grafana = { + users.users.grafana = { uid = config.ids.uids.grafana; description = "Grafana user"; home = cfg.dataDir; diff --git a/nixos/modules/services/monitoring/graphite.nix b/nixos/modules/services/monitoring/graphite.nix index 4b1ad34b3a4e..7ad26c137e51 100644 --- a/nixos/modules/services/monitoring/graphite.nix +++ b/nixos/modules/services/monitoring/graphite.nix @@ -638,13 +638,13 @@ in { cfg.web.enable || cfg.api.enable || cfg.seyren.enable || cfg.pager.enable || cfg.beacon.enable ) { - users.extraUsers = singleton { + users.users = singleton { name = "graphite"; uid = config.ids.uids.graphite; description = "Graphite daemon user"; home = dataDir; }; - users.extraGroups.graphite.gid = config.ids.gids.graphite; + users.groups.graphite.gid = config.ids.gids.graphite; }) ]; } diff --git a/nixos/modules/services/monitoring/heapster.nix b/nixos/modules/services/monitoring/heapster.nix index deee64aa41ea..fbdff2eb5dbe 100644 --- a/nixos/modules/services/monitoring/heapster.nix +++ b/nixos/modules/services/monitoring/heapster.nix @@ -49,7 +49,7 @@ in { }; }; - users.extraUsers = singleton { + users.users = singleton { name = "heapster"; uid = config.ids.uids.heapster; description = "Heapster user"; diff --git a/nixos/modules/services/monitoring/munin.nix b/nixos/modules/services/monitoring/munin.nix index 358ffd431dd4..ff9604c7dbcd 100644 --- a/nixos/modules/services/monitoring/munin.nix +++ b/nixos/modules/services/monitoring/munin.nix @@ -150,14 +150,14 @@ in environment.systemPackages = [ pkgs.munin ]; - users.extraUsers = [{ + users.users = [{ name = "munin"; description = "Munin monitoring user"; group = "munin"; uid = config.ids.uids.munin; }]; - users.extraGroups = [{ + users.groups = [{ name = "munin"; gid = config.ids.gids.munin; }]; diff --git a/nixos/modules/services/monitoring/nagios.nix b/nixos/modules/services/monitoring/nagios.nix index 4914c5db97d2..3e1d727b416e 100644 --- a/nixos/modules/services/monitoring/nagios.nix +++ b/nixos/modules/services/monitoring/nagios.nix @@ -143,7 +143,7 @@ in config = mkIf cfg.enable { - users.extraUsers.nagios = { + users.users.nagios = { description = "Nagios user "; uid = config.ids.uids.nagios; home = nagiosState; diff --git a/nixos/modules/services/monitoring/netdata.nix b/nixos/modules/services/monitoring/netdata.nix index d23b329eeb25..eefddf5a206b 100644 --- a/nixos/modules/services/monitoring/netdata.nix +++ b/nixos/modules/services/monitoring/netdata.nix @@ -100,11 +100,11 @@ in { }; - users.extraUsers = optional (cfg.user == defaultUser) { + users.users = optional (cfg.user == defaultUser) { name = defaultUser; }; - users.extraGroups = optional (cfg.group == defaultUser) { + users.groups = optional (cfg.group == defaultUser) { name = defaultUser; }; diff --git a/nixos/modules/services/monitoring/prometheus/default.nix b/nixos/modules/services/monitoring/prometheus/default.nix index 80122e69d167..5dda763bd56b 100644 --- a/nixos/modules/services/monitoring/prometheus/default.nix +++ b/nixos/modules/services/monitoring/prometheus/default.nix @@ -471,8 +471,8 @@ in { }; config = mkIf cfg.enable { - users.extraGroups.${promGroup}.gid = config.ids.gids.prometheus; - users.extraUsers.${promUser} = { + users.groups.${promGroup}.gid = config.ids.gids.prometheus; + users.users.${promUser} = { description = "Prometheus daemon user"; uid = config.ids.uids.prometheus; group = promGroup; diff --git a/nixos/modules/services/monitoring/riemann-dash.nix b/nixos/modules/services/monitoring/riemann-dash.nix index 523f74cb72b9..7eb4d888b0cc 100644 --- a/nixos/modules/services/monitoring/riemann-dash.nix +++ b/nixos/modules/services/monitoring/riemann-dash.nix @@ -51,9 +51,9 @@ in { config = mkIf cfg.enable { - users.extraGroups.riemanndash.gid = config.ids.gids.riemanndash; + users.groups.riemanndash.gid = config.ids.gids.riemanndash; - users.extraUsers.riemanndash = { + users.users.riemanndash = { description = "riemann-dash daemon user"; uid = config.ids.uids.riemanndash; group = "riemanndash"; diff --git a/nixos/modules/services/monitoring/riemann-tools.nix b/nixos/modules/services/monitoring/riemann-tools.nix index de858813a762..4e8832dadc5e 100644 --- a/nixos/modules/services/monitoring/riemann-tools.nix +++ b/nixos/modules/services/monitoring/riemann-tools.nix @@ -40,9 +40,9 @@ in { config = mkIf cfg.enableHealth { - users.extraGroups.riemanntools.gid = config.ids.gids.riemanntools; + users.groups.riemanntools.gid = config.ids.gids.riemanntools; - users.extraUsers.riemanntools = { + users.users.riemanntools = { description = "riemann-tools daemon user"; uid = config.ids.uids.riemanntools; group = "riemanntools"; diff --git a/nixos/modules/services/monitoring/riemann.nix b/nixos/modules/services/monitoring/riemann.nix index ac5d0134a80d..237de53456f9 100644 --- a/nixos/modules/services/monitoring/riemann.nix +++ b/nixos/modules/services/monitoring/riemann.nix @@ -69,9 +69,9 @@ in { config = mkIf cfg.enable { - users.extraGroups.riemann.gid = config.ids.gids.riemann; + users.groups.riemann.gid = config.ids.gids.riemann; - users.extraUsers.riemann = { + users.users.riemann = { description = "riemann daemon user"; uid = config.ids.uids.riemann; group = "riemann"; diff --git a/nixos/modules/services/monitoring/scollector.nix b/nixos/modules/services/monitoring/scollector.nix index 2684482c6184..6ecb21d628de 100644 --- a/nixos/modules/services/monitoring/scollector.nix +++ b/nixos/modules/services/monitoring/scollector.nix @@ -123,13 +123,13 @@ in { }; }; - users.extraUsers.scollector = { + users.users.scollector = { description = "scollector user"; group = "scollector"; uid = config.ids.uids.scollector; }; - users.extraGroups.scollector.gid = config.ids.gids.scollector; + users.groups.scollector.gid = config.ids.gids.scollector; }; diff --git a/nixos/modules/services/monitoring/statsd.nix b/nixos/modules/services/monitoring/statsd.nix index 7b0e9981cbb1..ea155821ecc9 100644 --- a/nixos/modules/services/monitoring/statsd.nix +++ b/nixos/modules/services/monitoring/statsd.nix @@ -125,7 +125,7 @@ in message = "Only builtin backends (graphite, console, repeater) or backends enumerated in `pkgs.nodePackages` are allowed!"; }) cfg.backends; - users.extraUsers = singleton { + users.users = singleton { name = "statsd"; uid = config.ids.uids.statsd; description = "Statsd daemon user"; diff --git a/nixos/modules/services/monitoring/telegraf.nix b/nixos/modules/services/monitoring/telegraf.nix index 49dc9d8143e6..6bfcd7143e1c 100644 --- a/nixos/modules/services/monitoring/telegraf.nix +++ b/nixos/modules/services/monitoring/telegraf.nix @@ -62,7 +62,7 @@ in { }; }; - users.extraUsers = [{ + users.users = [{ name = "telegraf"; uid = config.ids.uids.telegraf; description = "telegraf daemon user"; diff --git a/nixos/modules/services/monitoring/ups.nix b/nixos/modules/services/monitoring/ups.nix index 29dc68f90cc9..bc755612fd9b 100644 --- a/nixos/modules/services/monitoring/ups.nix +++ b/nixos/modules/services/monitoring/ups.nix @@ -259,7 +259,7 @@ in /* - users.extraUsers = [ + users.users = [ { name = "nut"; uid = 84; home = "/var/lib/nut"; @@ -269,7 +269,7 @@ in } ]; - users.extraGroups = [ + users.groups = [ { name = "nut"; gid = 84; } diff --git a/nixos/modules/services/monitoring/vnstat.nix b/nixos/modules/services/monitoring/vnstat.nix index ca56e4a7b958..cb2f8c07edb9 100644 --- a/nixos/modules/services/monitoring/vnstat.nix +++ b/nixos/modules/services/monitoring/vnstat.nix @@ -16,7 +16,7 @@ in { }; config = mkIf cfg.enable { - users.extraUsers.vnstatd = { + users.users.vnstatd = { isSystemUser = true; description = "vnstat daemon user"; home = "/var/lib/vnstat"; diff --git a/nixos/modules/services/monitoring/zabbix-agent.nix b/nixos/modules/services/monitoring/zabbix-agent.nix index 88a63b4bf161..87857225e7d7 100644 --- a/nixos/modules/services/monitoring/zabbix-agent.nix +++ b/nixos/modules/services/monitoring/zabbix-agent.nix @@ -68,7 +68,7 @@ in config = mkIf cfg.enable { - users.extraUsers = mkIf (!config.services.zabbixServer.enable) (singleton + users.users = mkIf (!config.services.zabbixServer.enable) (singleton { name = "zabbix"; uid = config.ids.uids.zabbix; description = "Zabbix daemon user"; diff --git a/nixos/modules/services/monitoring/zabbix-server.nix b/nixos/modules/services/monitoring/zabbix-server.nix index acd1279ddf47..f62d55457ed4 100644 --- a/nixos/modules/services/monitoring/zabbix-server.nix +++ b/nixos/modules/services/monitoring/zabbix-server.nix @@ -85,7 +85,7 @@ in services.postgresql.enable = useLocalPostgres; - users.extraUsers = singleton + users.users = singleton { name = "zabbix"; uid = config.ids.uids.zabbix; description = "Zabbix daemon user"; diff --git a/nixos/modules/services/network-filesystems/ceph.nix b/nixos/modules/services/network-filesystems/ceph.nix index 5de8ae79a246..4e3bc839d400 100644 --- a/nixos/modules/services/network-filesystems/ceph.nix +++ b/nixos/modules/services/network-filesystems/ceph.nix @@ -332,13 +332,13 @@ in in generators.toINI {} totalConfig; - users.extraUsers = singleton { + users.users = singleton { name = "ceph"; uid = config.ids.uids.ceph; description = "Ceph daemon user"; }; - users.extraGroups = singleton { + users.groups = singleton { name = "ceph"; gid = config.ids.gids.ceph; }; diff --git a/nixos/modules/services/network-filesystems/davfs2.nix b/nixos/modules/services/network-filesystems/davfs2.nix index 6b2a770100c5..c16e12378d75 100644 --- a/nixos/modules/services/network-filesystems/davfs2.nix +++ b/nixos/modules/services/network-filesystems/davfs2.nix @@ -57,12 +57,12 @@ in environment.systemPackages = [ pkgs.davfs2 ]; environment.etc."davfs2/davfs2.conf".source = cfgFile; - users.extraGroups = optionalAttrs (cfg.davGroup == "davfs2") (singleton { + users.groups = optionalAttrs (cfg.davGroup == "davfs2") (singleton { name = "davfs2"; gid = config.ids.gids.davfs2; }); - users.extraUsers = optionalAttrs (cfg.davUser == "davfs2") (singleton { + users.users = optionalAttrs (cfg.davUser == "davfs2") (singleton { name = "davfs2"; createHome = false; group = cfg.davGroup; diff --git a/nixos/modules/services/network-filesystems/ipfs.nix b/nixos/modules/services/network-filesystems/ipfs.nix index ab6d3a3d2fa4..21b664e5b2f9 100644 --- a/nixos/modules/services/network-filesystems/ipfs.nix +++ b/nixos/modules/services/network-filesystems/ipfs.nix @@ -212,7 +212,7 @@ in { user_allow_other ''; }; - users.extraUsers = mkIf (cfg.user == "ipfs") { + users.users = mkIf (cfg.user == "ipfs") { ipfs = { group = cfg.group; home = cfg.dataDir; @@ -222,7 +222,7 @@ in { }; }; - users.extraGroups = mkIf (cfg.group == "ipfs") { + users.groups = mkIf (cfg.group == "ipfs") { ipfs.gid = config.ids.gids.ipfs; }; diff --git a/nixos/modules/services/network-filesystems/tahoe.nix b/nixos/modules/services/network-filesystems/tahoe.nix index 80b34c48f1d2..534862a3c9e4 100644 --- a/nixos/modules/services/network-filesystems/tahoe.nix +++ b/nixos/modules/services/network-filesystems/tahoe.nix @@ -255,7 +255,7 @@ in cp /etc/tahoe-lafs/introducer-"${node}".cfg ${lib.escapeShellArg nodedir}/tahoe.cfg ''; }); - users.extraUsers = flip mapAttrs' cfg.introducers (node: _: + users.users = flip mapAttrs' cfg.introducers (node: _: nameValuePair "tahoe.introducer-${node}" { description = "Tahoe node user for introducer ${node}"; isSystemUser = true; @@ -355,7 +355,7 @@ in cp /etc/tahoe-lafs/${lib.escapeShellArg node}.cfg ${lib.escapeShellArg nodedir}/tahoe.cfg ''; }); - users.extraUsers = flip mapAttrs' cfg.nodes (node: _: + users.users = flip mapAttrs' cfg.nodes (node: _: nameValuePair "tahoe.${node}" { description = "Tahoe node user for node ${node}"; isSystemUser = true; diff --git a/nixos/modules/services/network-filesystems/xtreemfs.nix b/nixos/modules/services/network-filesystems/xtreemfs.nix index 95d7641e8b53..c93e201da56c 100644 --- a/nixos/modules/services/network-filesystems/xtreemfs.nix +++ b/nixos/modules/services/network-filesystems/xtreemfs.nix @@ -432,14 +432,14 @@ in environment.systemPackages = [ xtreemfs ]; - users.extraUsers.xtreemfs = + users.users.xtreemfs = { uid = config.ids.uids.xtreemfs; description = "XtreemFS user"; createHome = true; home = home; }; - users.extraGroups.xtreemfs = + users.groups.xtreemfs = { gid = config.ids.gids.xtreemfs; }; diff --git a/nixos/modules/services/network-filesystems/yandex-disk.nix b/nixos/modules/services/network-filesystems/yandex-disk.nix index 44b0edf62018..e93f45b49867 100644 --- a/nixos/modules/services/network-filesystems/yandex-disk.nix +++ b/nixos/modules/services/network-filesystems/yandex-disk.nix @@ -73,7 +73,7 @@ in config = mkIf cfg.enable { - users.extraUsers = mkIf (cfg.user == null) [ { + users.users = mkIf (cfg.user == null) [ { name = u; uid = config.ids.uids.yandexdisk; group = "nogroup"; diff --git a/nixos/modules/services/networking/amuled.nix b/nixos/modules/services/networking/amuled.nix index 9898f164c5cf..57f02542eafd 100644 --- a/nixos/modules/services/networking/amuled.nix +++ b/nixos/modules/services/networking/amuled.nix @@ -45,14 +45,14 @@ in config = mkIf cfg.enable { - users.extraUsers = mkIf (cfg.user == null) [ + users.users = mkIf (cfg.user == null) [ { name = "amule"; description = "AMule daemon"; group = "amule"; uid = config.ids.uids.amule; } ]; - users.extraGroups = mkIf (cfg.user == null) [ + users.groups = mkIf (cfg.user == null) [ { name = "amule"; gid = config.ids.gids.amule; } ]; diff --git a/nixos/modules/services/networking/aria2.nix b/nixos/modules/services/networking/aria2.nix index df9c92db2e54..98eb00861016 100644 --- a/nixos/modules/services/networking/aria2.nix +++ b/nixos/modules/services/networking/aria2.nix @@ -92,7 +92,7 @@ in allowedTCPPorts = [ config.services.aria2.rpcListenPort ]; }; - users.extraUsers.aria2 = { + users.users.aria2 = { group = "aria2"; uid = config.ids.uids.aria2; description = "aria2 user"; @@ -100,7 +100,7 @@ in createHome = false; }; - users.extraGroups.aria2.gid = config.ids.gids.aria2; + users.groups.aria2.gid = config.ids.gids.aria2; systemd.services.aria2 = { description = "aria2 Service"; diff --git a/nixos/modules/services/networking/asterisk.nix b/nixos/modules/services/networking/asterisk.nix index 514204db33fa..b8ec2b25a227 100644 --- a/nixos/modules/services/networking/asterisk.nix +++ b/nixos/modules/services/networking/asterisk.nix @@ -211,7 +211,7 @@ in environment.etc.asterisk.source = asteriskEtc; - users.extraUsers.asterisk = + users.users.asterisk = { name = asteriskUser; group = asteriskGroup; uid = config.ids.uids.asterisk; @@ -219,7 +219,7 @@ in home = varlibdir; }; - users.extraGroups.asterisk = + users.groups.asterisk = { name = asteriskGroup; gid = config.ids.gids.asterisk; }; diff --git a/nixos/modules/services/networking/avahi-daemon.nix b/nixos/modules/services/networking/avahi-daemon.nix index 9ccdacb20e91..81e11db10409 100644 --- a/nixos/modules/services/networking/avahi-daemon.nix +++ b/nixos/modules/services/networking/avahi-daemon.nix @@ -187,14 +187,14 @@ in services.avahi.hostName = mkDefault config.networking.hostName; - users.extraUsers = singleton + users.users = singleton { name = "avahi"; uid = config.ids.uids.avahi; description = "`avahi-daemon' privilege separation user"; home = "/var/empty"; }; - users.extraGroups = singleton + users.groups = singleton { name = "avahi"; gid = config.ids.gids.avahi; }; diff --git a/nixos/modules/services/networking/bind.nix b/nixos/modules/services/networking/bind.nix index 7775a4bd87fe..abcd1ef6ff5d 100644 --- a/nixos/modules/services/networking/bind.nix +++ b/nixos/modules/services/networking/bind.nix @@ -170,7 +170,7 @@ in config = mkIf config.services.bind.enable { - users.extraUsers = singleton + users.users = singleton { name = bindUser; uid = config.ids.uids.bind; description = "BIND daemon user"; diff --git a/nixos/modules/services/networking/bird.nix b/nixos/modules/services/networking/bird.nix index c25bd0fdc541..9f08cc0a79ed 100644 --- a/nixos/modules/services/networking/bird.nix +++ b/nixos/modules/services/networking/bird.nix @@ -60,11 +60,11 @@ let }; }; users = { - extraUsers.${variant} = { + users.${variant} = { description = "BIRD Internet Routing Daemon user"; group = variant; }; - extraGroups.${variant} = {}; + groups.${variant} = {}; }; }; }; diff --git a/nixos/modules/services/networking/bitlbee.nix b/nixos/modules/services/networking/bitlbee.nix index bd26804788f3..392a8d5c2e7c 100644 --- a/nixos/modules/services/networking/bitlbee.nix +++ b/nixos/modules/services/networking/bitlbee.nix @@ -149,7 +149,7 @@ in config = mkIf config.services.bitlbee.enable { - users.extraUsers = singleton + users.users = singleton { name = "bitlbee"; uid = bitlbeeUid; description = "BitlBee user"; @@ -157,7 +157,7 @@ in createHome = true; }; - users.extraGroups = singleton + users.groups = singleton { name = "bitlbee"; gid = config.ids.gids.bitlbee; }; diff --git a/nixos/modules/services/networking/btsync.nix b/nixos/modules/services/networking/btsync.nix index 6e479a5860ac..33e85ef58e6e 100644 --- a/nixos/modules/services/networking/btsync.nix +++ b/nixos/modules/services/networking/btsync.nix @@ -284,7 +284,7 @@ in services.btsync.package = mkOptionDefault pkgs.bittorrentSync14; - users.extraUsers.btsync = { + users.users.btsync = { description = "Bittorrent Sync Service user"; home = cfg.storagePath; createHome = true; @@ -292,7 +292,7 @@ in group = "btsync"; }; - users.extraGroups = [ + users.groups = [ { name = "btsync"; }]; diff --git a/nixos/modules/services/networking/charybdis.nix b/nixos/modules/services/networking/charybdis.nix index c354ec61fe23..6d57faa9ac2b 100644 --- a/nixos/modules/services/networking/charybdis.nix +++ b/nixos/modules/services/networking/charybdis.nix @@ -71,14 +71,14 @@ in config = mkIf cfg.enable (lib.mkMerge [ { - users.extraUsers = singleton { + users.users = singleton { name = cfg.user; description = "Charybdis IRC daemon user"; uid = config.ids.uids.ircd; group = cfg.group; }; - users.extraGroups = singleton { + users.groups = singleton { name = cfg.group; gid = config.ids.gids.ircd; }; diff --git a/nixos/modules/services/networking/chrony.nix b/nixos/modules/services/networking/chrony.nix index c287ca01feb5..6a89002b42de 100644 --- a/nixos/modules/services/networking/chrony.nix +++ b/nixos/modules/services/networking/chrony.nix @@ -96,12 +96,12 @@ in # Make chronyc available in the system path environment.systemPackages = [ pkgs.chrony ]; - users.extraGroups = singleton + users.groups = singleton { name = "chrony"; gid = config.ids.gids.chrony; }; - users.extraUsers = singleton + users.users = singleton { name = "chrony"; uid = config.ids.uids.chrony; group = "chrony"; diff --git a/nixos/modules/services/networking/cntlm.nix b/nixos/modules/services/networking/cntlm.nix index 3978a1969ce9..4e4e3104c3a8 100644 --- a/nixos/modules/services/networking/cntlm.nix +++ b/nixos/modules/services/networking/cntlm.nix @@ -117,7 +117,7 @@ in }; }; - users.extraUsers.cntlm = { + users.users.cntlm = { name = "cntlm"; description = "cntlm system-wide daemon"; isSystemUser = true; diff --git a/nixos/modules/services/networking/consul.nix b/nixos/modules/services/networking/consul.nix index 6333970cb338..ab3f81037681 100644 --- a/nixos/modules/services/networking/consul.nix +++ b/nixos/modules/services/networking/consul.nix @@ -155,7 +155,7 @@ in config = mkIf cfg.enable ( mkMerge [{ - users.extraUsers."consul" = { + users.users."consul" = { description = "Consul agent daemon user"; uid = config.ids.uids.consul; # The shell is needed for health checks diff --git a/nixos/modules/services/networking/coturn.nix b/nixos/modules/services/networking/coturn.nix index b3c64490d97e..c430ce5af92a 100644 --- a/nixos/modules/services/networking/coturn.nix +++ b/nixos/modules/services/networking/coturn.nix @@ -294,12 +294,12 @@ in { }; config = mkIf cfg.enable { - users.extraUsers = [ + users.users = [ { name = "turnserver"; uid = config.ids.uids.turnserver; description = "coturn TURN server user"; } ]; - users.extraGroups = [ + users.groups = [ { name = "turnserver"; gid = config.ids.gids.turnserver; members = [ "turnserver" ]; diff --git a/nixos/modules/services/networking/dhcpd.nix b/nixos/modules/services/networking/dhcpd.nix index fd7e317eee95..0b2063bc4246 100644 --- a/nixos/modules/services/networking/dhcpd.nix +++ b/nixos/modules/services/networking/dhcpd.nix @@ -197,7 +197,7 @@ in config = mkIf (cfg4.enable || cfg6.enable) { users = { - extraUsers.dhcpd = { + users.dhcpd = { uid = config.ids.uids.dhcpd; description = "DHCP daemon user"; }; diff --git a/nixos/modules/services/networking/dnscache.nix b/nixos/modules/services/networking/dnscache.nix index ba5c8e2d5e53..fc30f50317fe 100644 --- a/nixos/modules/services/networking/dnscache.nix +++ b/nixos/modules/services/networking/dnscache.nix @@ -84,7 +84,7 @@ in { config = mkIf config.services.dnscache.enable { environment.systemPackages = [ pkgs.djbdns ]; - users.extraUsers.dnscache = {}; + users.users.dnscache = {}; systemd.services.dnscache = { description = "djbdns dnscache server"; diff --git a/nixos/modules/services/networking/dnschain.nix b/nixos/modules/services/networking/dnschain.nix index ee1cd3600039..0c2add424bac 100644 --- a/nixos/modules/services/networking/dnschain.nix +++ b/nixos/modules/services/networking/dnschain.nix @@ -141,7 +141,7 @@ in dns = "127.0.0.1:${toString cfg.dns.port}"; }; - users.extraUsers = singleton { + users.users = singleton { name = username; description = "DNSChain daemon user"; home = dataDir; diff --git a/nixos/modules/services/networking/dnsmasq.nix b/nixos/modules/services/networking/dnsmasq.nix index 91a3e54474ac..24d16046c63e 100644 --- a/nixos/modules/services/networking/dnsmasq.nix +++ b/nixos/modules/services/networking/dnsmasq.nix @@ -86,7 +86,7 @@ in services.dbus.packages = [ dnsmasq ]; - users.extraUsers = singleton { + users.users = singleton { name = "dnsmasq"; uid = config.ids.uids.dnsmasq; description = "Dnsmasq daemon user"; diff --git a/nixos/modules/services/networking/ejabberd.nix b/nixos/modules/services/networking/ejabberd.nix index 82ed7fc4a837..ef5e2cee6f20 100644 --- a/nixos/modules/services/networking/ejabberd.nix +++ b/nixos/modules/services/networking/ejabberd.nix @@ -94,7 +94,7 @@ in { config = mkIf cfg.enable { environment.systemPackages = [ cfg.package ]; - users.extraUsers = optionalAttrs (cfg.user == "ejabberd") (singleton + users.users = optionalAttrs (cfg.user == "ejabberd") (singleton { name = "ejabberd"; group = cfg.group; home = cfg.spoolDir; @@ -102,7 +102,7 @@ in { uid = config.ids.uids.ejabberd; }); - users.extraGroups = optionalAttrs (cfg.group == "ejabberd") (singleton + users.groups = optionalAttrs (cfg.group == "ejabberd") (singleton { name = "ejabberd"; gid = config.ids.gids.ejabberd; }); diff --git a/nixos/modules/services/networking/firewall.nix b/nixos/modules/services/networking/firewall.nix index c4bd0e7f9eef..36f1dd8d2479 100644 --- a/nixos/modules/services/networking/firewall.nix +++ b/nixos/modules/services/networking/firewall.nix @@ -148,38 +148,42 @@ let ip46tables -A nixos-fw -m conntrack --ctstate ESTABLISHED,RELATED -j nixos-fw-accept # Accept connections to the allowed TCP ports. - ${concatMapStrings (port: + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (port: '' - ip46tables -A nixos-fw -p tcp --dport ${toString port} -j nixos-fw-accept + ip46tables -A nixos-fw -p tcp --dport ${toString port} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} '' ) cfg.allowedTCPPorts - } + ) cfg.interfaces)} # Accept connections to the allowed TCP port ranges. - ${concatMapStrings (rangeAttr: + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (rangeAttr: let range = toString rangeAttr.from + ":" + toString rangeAttr.to; in '' - ip46tables -A nixos-fw -p tcp --dport ${range} -j nixos-fw-accept + ip46tables -A nixos-fw -p tcp --dport ${range} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} '' ) cfg.allowedTCPPortRanges - } + ) cfg.interfaces)} # Accept packets on the allowed UDP ports. - ${concatMapStrings (port: + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (port: '' - ip46tables -A nixos-fw -p udp --dport ${toString port} -j nixos-fw-accept + ip46tables -A nixos-fw -p udp --dport ${toString port} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} '' ) cfg.allowedUDPPorts - } + ) cfg.interfaces)} # Accept packets on the allowed UDP port ranges. - ${concatMapStrings (rangeAttr: + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (rangeAttr: let range = toString rangeAttr.from + ":" + toString rangeAttr.to; in '' - ip46tables -A nixos-fw -p udp --dport ${range} -j nixos-fw-accept + ip46tables -A nixos-fw -p udp --dport ${range} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} '' ) cfg.allowedUDPPortRanges - } + ) cfg.interfaces)} # Accept IPv4 multicast. Not a big security risk since # probably nobody is listening anyway. @@ -254,106 +258,30 @@ let fi ''; -in - -{ - - ###### interface - - options = { - - networking.firewall.enable = mkOption { - type = types.bool; - default = true; - description = - '' - Whether to enable the firewall. This is a simple stateful - firewall that blocks connection attempts to unauthorised TCP - or UDP ports on this machine. It does not affect packet - forwarding. - ''; - }; - - networking.firewall.logRefusedConnections = mkOption { - type = types.bool; - default = true; - description = - '' - Whether to log rejected or dropped incoming connections. - ''; - }; - - networking.firewall.logRefusedPackets = mkOption { - type = types.bool; - default = false; - description = - '' - Whether to log all rejected or dropped incoming packets. - This tends to give a lot of log messages, so it's mostly - useful for debugging. - ''; - }; - - networking.firewall.logRefusedUnicastsOnly = mkOption { - type = types.bool; - default = true; - description = - '' - If <option>networking.firewall.logRefusedPackets</option> - and this option are enabled, then only log packets - specifically directed at this machine, i.e., not broadcasts - or multicasts. - ''; - }; - - networking.firewall.rejectPackets = mkOption { - type = types.bool; - default = false; - description = - '' - If set, refused packets are rejected rather than dropped - (ignored). This means that an ICMP "port unreachable" error - message is sent back to the client (or a TCP RST packet in - case of an existing connection). Rejecting packets makes - port scanning somewhat easier. - ''; - }; - - networking.firewall.trustedInterfaces = mkOption { - type = types.listOf types.str; - default = [ ]; - example = [ "enp0s2" ]; - description = - '' - Traffic coming in from these interfaces will be accepted - unconditionally. Traffic from the loopback (lo) interface - will always be accepted. - ''; - }; - - networking.firewall.allowedTCPPorts = mkOption { + commonOptions = { + allowedTCPPorts = mkOption { type = types.listOf types.int; default = [ ]; example = [ 22 80 ]; description = - '' + '' List of TCP ports on which incoming connections are accepted. ''; }; - networking.firewall.allowedTCPPortRanges = mkOption { + allowedTCPPortRanges = mkOption { type = types.listOf (types.attrsOf types.int); default = [ ]; example = [ { from = 8999; to = 9003; } ]; description = - '' + '' A range of TCP ports on which incoming connections are accepted. ''; }; - networking.firewall.allowedUDPPorts = mkOption { + allowedUDPPorts = mkOption { type = types.listOf types.int; default = [ ]; example = [ 53 ]; @@ -363,7 +291,7 @@ in ''; }; - networking.firewall.allowedUDPPortRanges = mkOption { + allowedUDPPortRanges = mkOption { type = types.listOf (types.attrsOf types.int); default = [ ]; example = [ { from = 60000; to = 61000; } ]; @@ -372,133 +300,226 @@ in Range of open UDP ports. ''; }; + }; - networking.firewall.allowPing = mkOption { - type = types.bool; - default = true; - description = - '' - Whether to respond to incoming ICMPv4 echo requests - ("pings"). ICMPv6 pings are always allowed because the - larger address space of IPv6 makes network scanning much - less effective. - ''; - }; +in - networking.firewall.pingLimit = mkOption { - type = types.nullOr (types.separatedString " "); - default = null; - example = "--limit 1/minute --limit-burst 5"; - description = - '' - If pings are allowed, this allows setting rate limits - on them. If non-null, this option should be in the form of - flags like "--limit 1/minute --limit-burst 5" - ''; - }; +{ - networking.firewall.checkReversePath = mkOption { - type = types.either types.bool (types.enum ["strict" "loose"]); - default = kernelHasRPFilter; - example = "loose"; - description = - '' - Performs a reverse path filter test on a packet. If a reply - to the packet would not be sent via the same interface that - the packet arrived on, it is refused. + ###### interface - If using asymmetric routing or other complicated routing, set - this option to loose mode or disable it and setup your own - counter-measures. + options = { - This option can be either true (or "strict"), "loose" (only - drop the packet if the source address is not reachable via any - interface) or false. Defaults to the value of - kernelHasRPFilter. + networking.firewall = { + enable = mkOption { + type = types.bool; + default = true; + description = + '' + Whether to enable the firewall. This is a simple stateful + firewall that blocks connection attempts to unauthorised TCP + or UDP ports on this machine. It does not affect packet + forwarding. + ''; + }; - (needs kernel 3.3+) - ''; - }; + logRefusedConnections = mkOption { + type = types.bool; + default = true; + description = + '' + Whether to log rejected or dropped incoming connections. + ''; + }; - networking.firewall.logReversePathDrops = mkOption { - type = types.bool; - default = false; - description = - '' - Logs dropped packets failing the reverse path filter test if - the option networking.firewall.checkReversePath is enabled. - ''; - }; + logRefusedPackets = mkOption { + type = types.bool; + default = false; + description = + '' + Whether to log all rejected or dropped incoming packets. + This tends to give a lot of log messages, so it's mostly + useful for debugging. + ''; + }; - networking.firewall.connectionTrackingModules = mkOption { - type = types.listOf types.str; - default = [ ]; - example = [ "ftp" "irc" "sane" "sip" "tftp" "amanda" "h323" "netbios_sn" "pptp" "snmp" ]; - description = - '' - List of connection-tracking helpers that are auto-loaded. - The complete list of possible values is given in the example. - - As helpers can pose as a security risk, it is advised to - set this to an empty list and disable the setting - networking.firewall.autoLoadConntrackHelpers unless you - know what you are doing. Connection tracking is disabled - by default. - - Loading of helpers is recommended to be done through the - CT target. More info: - https://home.regit.org/netfilter-en/secure-use-of-helpers/ - ''; - }; + logRefusedUnicastsOnly = mkOption { + type = types.bool; + default = true; + description = + '' + If <option>networking.firewall.logRefusedPackets</option> + and this option are enabled, then only log packets + specifically directed at this machine, i.e., not broadcasts + or multicasts. + ''; + }; - networking.firewall.autoLoadConntrackHelpers = mkOption { - type = types.bool; - default = false; - description = - '' - Whether to auto-load connection-tracking helpers. - See the description at networking.firewall.connectionTrackingModules + rejectPackets = mkOption { + type = types.bool; + default = false; + description = + '' + If set, refused packets are rejected rather than dropped + (ignored). This means that an ICMP "port unreachable" error + message is sent back to the client (or a TCP RST packet in + case of an existing connection). Rejecting packets makes + port scanning somewhat easier. + ''; + }; - (needs kernel 3.5+) - ''; - }; + trustedInterfaces = mkOption { + type = types.listOf types.str; + default = [ ]; + example = [ "enp0s2" ]; + description = + '' + Traffic coming in from these interfaces will be accepted + unconditionally. Traffic from the loopback (lo) interface + will always be accepted. + ''; + }; - networking.firewall.extraCommands = mkOption { - type = types.lines; - default = ""; - example = "iptables -A INPUT -p icmp -j ACCEPT"; - description = - '' - Additional shell commands executed as part of the firewall - initialisation script. These are executed just before the - final "reject" firewall rule is added, so they can be used - to allow packets that would otherwise be refused. - ''; - }; + allowPing = mkOption { + type = types.bool; + default = true; + description = + '' + Whether to respond to incoming ICMPv4 echo requests + ("pings"). ICMPv6 pings are always allowed because the + larger address space of IPv6 makes network scanning much + less effective. + ''; + }; - networking.firewall.extraPackages = mkOption { - type = types.listOf types.package; - default = [ ]; - example = literalExample "[ pkgs.ipset ]"; - description = - '' - Additional packages to be included in the environment of the system - as well as the path of networking.firewall.extraCommands. - ''; - }; + pingLimit = mkOption { + type = types.nullOr (types.separatedString " "); + default = null; + example = "--limit 1/minute --limit-burst 5"; + description = + '' + If pings are allowed, this allows setting rate limits + on them. If non-null, this option should be in the form of + flags like "--limit 1/minute --limit-burst 5" + ''; + }; - networking.firewall.extraStopCommands = mkOption { - type = types.lines; - default = ""; - example = "iptables -P INPUT ACCEPT"; - description = - '' - Additional shell commands executed as part of the firewall - shutdown script. These are executed just after the removal - of the NixOS input rule, or if the service enters a failed - state. - ''; - }; + checkReversePath = mkOption { + type = types.either types.bool (types.enum ["strict" "loose"]); + default = kernelHasRPFilter; + example = "loose"; + description = + '' + Performs a reverse path filter test on a packet. If a reply + to the packet would not be sent via the same interface that + the packet arrived on, it is refused. + + If using asymmetric routing or other complicated routing, set + this option to loose mode or disable it and setup your own + counter-measures. + + This option can be either true (or "strict"), "loose" (only + drop the packet if the source address is not reachable via any + interface) or false. Defaults to the value of + kernelHasRPFilter. + + (needs kernel 3.3+) + ''; + }; + + logReversePathDrops = mkOption { + type = types.bool; + default = false; + description = + '' + Logs dropped packets failing the reverse path filter test if + the option networking.firewall.checkReversePath is enabled. + ''; + }; + + connectionTrackingModules = mkOption { + type = types.listOf types.str; + default = [ ]; + example = [ "ftp" "irc" "sane" "sip" "tftp" "amanda" "h323" "netbios_sn" "pptp" "snmp" ]; + description = + '' + List of connection-tracking helpers that are auto-loaded. + The complete list of possible values is given in the example. + + As helpers can pose as a security risk, it is advised to + set this to an empty list and disable the setting + networking.firewall.autoLoadConntrackHelpers unless you + know what you are doing. Connection tracking is disabled + by default. + + Loading of helpers is recommended to be done through the + CT target. More info: + https://home.regit.org/netfilter-en/secure-use-of-helpers/ + ''; + }; + + autoLoadConntrackHelpers = mkOption { + type = types.bool; + default = false; + description = + '' + Whether to auto-load connection-tracking helpers. + See the description at networking.firewall.connectionTrackingModules + + (needs kernel 3.5+) + ''; + }; + + extraCommands = mkOption { + type = types.lines; + default = ""; + example = "iptables -A INPUT -p icmp -j ACCEPT"; + description = + '' + Additional shell commands executed as part of the firewall + initialisation script. These are executed just before the + final "reject" firewall rule is added, so they can be used + to allow packets that would otherwise be refused. + ''; + }; + + extraPackages = mkOption { + type = types.listOf types.package; + default = [ ]; + example = literalExample "[ pkgs.ipset ]"; + description = + '' + Additional packages to be included in the environment of the system + as well as the path of networking.firewall.extraCommands. + ''; + }; + + extraStopCommands = mkOption { + type = types.lines; + default = ""; + example = "iptables -P INPUT ACCEPT"; + description = + '' + Additional shell commands executed as part of the firewall + shutdown script. These are executed just after the removal + of the NixOS input rule, or if the service enters a failed + state. + ''; + }; + + interfaces = mkOption { + default = { + default = mapAttrs (name: value: cfg."${name}") commonOptions; + }; + type = with types; attrsOf (submodule [ { options = commonOptions; } ]); + description = + '' + Interface-specific open ports. Setting this value will override + all values of the <literal>networking.firewall.allowed*</literal> + options. + ''; + }; + } // commonOptions; }; diff --git a/nixos/modules/services/networking/freenet.nix b/nixos/modules/services/networking/freenet.nix index 3903a2c708cb..3da3ab0c7df4 100644 --- a/nixos/modules/services/networking/freenet.nix +++ b/nixos/modules/services/networking/freenet.nix @@ -50,7 +50,7 @@ in serviceConfig.Nice = cfg.nice; }; - users.extraUsers.freenet = { + users.users.freenet = { group = "freenet"; description = "Freenet daemon user"; home = varDir; @@ -58,7 +58,7 @@ in uid = config.ids.uids.freenet; }; - users.extraGroups.freenet.gid = config.ids.gids.freenet; + users.groups.freenet.gid = config.ids.gids.freenet; }; } diff --git a/nixos/modules/services/networking/freeradius.nix b/nixos/modules/services/networking/freeradius.nix index 45cba1ce2770..e192b70c129c 100644 --- a/nixos/modules/services/networking/freeradius.nix +++ b/nixos/modules/services/networking/freeradius.nix @@ -59,7 +59,7 @@ in config = mkIf (cfg.enable) { users = { - extraUsers.radius = { + users.radius = { /*uid = config.ids.uids.radius;*/ description = "Radius daemon user"; }; diff --git a/nixos/modules/services/networking/gale.nix b/nixos/modules/services/networking/gale.nix index fd83f9e3c1b7..7083d87c4073 100644 --- a/nixos/modules/services/networking/gale.nix +++ b/nixos/modules/services/networking/gale.nix @@ -104,7 +104,7 @@ in systemPackages = [ pkgs.gale ]; }; - users.extraUsers = [{ + users.users = [{ name = cfg.user; description = "Gale daemon"; uid = config.ids.uids.gale; @@ -113,7 +113,7 @@ in createHome = true; }]; - users.extraGroups = [{ + users.groups = [{ name = cfg.group; gid = config.ids.gids.gale; }]; diff --git a/nixos/modules/services/networking/gateone.nix b/nixos/modules/services/networking/gateone.nix index 78ff0b76198c..4456a95402ed 100644 --- a/nixos/modules/services/networking/gateone.nix +++ b/nixos/modules/services/networking/gateone.nix @@ -23,12 +23,12 @@ config = mkIf cfg.enable { environment.systemPackages = with pkgs.pythonPackages; [ gateone pkgs.openssh pkgs.procps pkgs.coreutils pkgs.cacert]; - users.extraUsers.gateone = { + users.users.gateone = { description = "GateOne privilege separation user"; uid = config.ids.uids.gateone; home = cfg.settingsDir; }; - users.extraGroups.gateone.gid = config.ids.gids.gateone; + users.groups.gateone.gid = config.ids.gids.gateone; systemd.services.gateone = with pkgs; { description = "GateOne web-based terminal"; diff --git a/nixos/modules/services/networking/git-daemon.nix b/nixos/modules/services/networking/git-daemon.nix index cd3fcd0f8f66..c0020349ec74 100644 --- a/nixos/modules/services/networking/git-daemon.nix +++ b/nixos/modules/services/networking/git-daemon.nix @@ -104,13 +104,13 @@ in config = mkIf cfg.enable { - users.extraUsers = if cfg.user != "git" then {} else singleton + users.users = if cfg.user != "git" then {} else singleton { name = "git"; uid = config.ids.uids.git; description = "Git daemon user"; }; - users.extraGroups = if cfg.group != "git" then {} else singleton + users.groups = if cfg.group != "git" then {} else singleton { name = "git"; gid = config.ids.gids.git; }; diff --git a/nixos/modules/services/networking/gnunet.nix b/nixos/modules/services/networking/gnunet.nix index 008b09e81a57..6a1db81413c5 100644 --- a/nixos/modules/services/networking/gnunet.nix +++ b/nixos/modules/services/networking/gnunet.nix @@ -126,7 +126,7 @@ in config = mkIf config.services.gnunet.enable { - users.extraUsers.gnunet = { + users.users.gnunet = { group = "gnunet"; description = "GNUnet User"; home = homeDir; @@ -134,7 +134,7 @@ in uid = config.ids.uids.gnunet; }; - users.extraGroups.gnunet.gid = config.ids.gids.gnunet; + users.groups.gnunet.gid = config.ids.gids.gnunet; # The user tools that talk to `gnunetd' should come from the same source, # so install them globally. diff --git a/nixos/modules/services/networking/hans.nix b/nixos/modules/services/networking/hans.nix index dd34ef8d4ca1..20e57e4626ef 100644 --- a/nixos/modules/services/networking/hans.nix +++ b/nixos/modules/services/networking/hans.nix @@ -135,7 +135,7 @@ in }; }; - users.extraUsers = singleton { + users.users = singleton { name = hansUser; description = "Hans daemon user"; }; diff --git a/nixos/modules/services/networking/haproxy.nix b/nixos/modules/services/networking/haproxy.nix index 09e48ec4bff0..0438d0bf8d86 100644 --- a/nixos/modules/services/networking/haproxy.nix +++ b/nixos/modules/services/networking/haproxy.nix @@ -52,11 +52,11 @@ with lib; environment.systemPackages = [ pkgs.haproxy ]; - users.extraUsers.haproxy = { + users.users.haproxy = { group = "haproxy"; uid = config.ids.uids.haproxy; }; - users.extraGroups.haproxy.gid = config.ids.uids.haproxy; + users.groups.haproxy.gid = config.ids.uids.haproxy; }; } diff --git a/nixos/modules/services/networking/i2p.nix b/nixos/modules/services/networking/i2p.nix index e6ee5fd1f957..3b6010531f13 100644 --- a/nixos/modules/services/networking/i2p.nix +++ b/nixos/modules/services/networking/i2p.nix @@ -11,14 +11,14 @@ in { ###### implementation config = mkIf cfg.enable { - users.extraUsers.i2p = { + users.users.i2p = { group = "i2p"; description = "i2p User"; home = homeDir; createHome = true; uid = config.ids.uids.i2p; }; - users.extraGroups.i2p.gid = config.ids.gids.i2p; + users.groups.i2p.gid = config.ids.gids.i2p; systemd.services.i2p = { description = "I2P router with administration interface for hidden services"; after = [ "network.target" ]; diff --git a/nixos/modules/services/networking/i2pd.nix b/nixos/modules/services/networking/i2pd.nix index 8f5aeee4a16b..8875309143fd 100644 --- a/nixos/modules/services/networking/i2pd.nix +++ b/nixos/modules/services/networking/i2pd.nix @@ -456,7 +456,7 @@ in config = mkIf cfg.enable { - users.extraUsers.i2pd = { + users.users.i2pd = { group = "i2pd"; description = "I2Pd User"; home = homeDir; @@ -464,7 +464,7 @@ in uid = config.ids.uids.i2pd; }; - users.extraGroups.i2pd.gid = config.ids.gids.i2pd; + users.groups.i2pd.gid = config.ids.gids.i2pd; systemd.services.i2pd = { description = "Minimal I2P router"; diff --git a/nixos/modules/services/networking/iodine.nix b/nixos/modules/services/networking/iodine.nix index 3f41421d27f7..58ad0df4ff20 100644 --- a/nixos/modules/services/networking/iodine.nix +++ b/nixos/modules/services/networking/iodine.nix @@ -140,11 +140,11 @@ in }; }; - users.extraUsers = singleton { + users.users = singleton { name = iodinedUser; uid = config.ids.uids.iodined; description = "Iodine daemon user"; }; - users.extraGroups.iodined.gid = config.ids.gids.iodined; + users.groups.iodined.gid = config.ids.gids.iodined; }; } diff --git a/nixos/modules/services/networking/ircd-hybrid/default.nix b/nixos/modules/services/networking/ircd-hybrid/default.nix index bd583fb020ec..2bd898edf897 100644 --- a/nixos/modules/services/networking/ircd-hybrid/default.nix +++ b/nixos/modules/services/networking/ircd-hybrid/default.nix @@ -112,14 +112,14 @@ in config = mkIf config.services.ircdHybrid.enable { - users.extraUsers = singleton + users.users = singleton { name = "ircd"; description = "IRCD owner"; group = "ircd"; uid = config.ids.uids.ircd; }; - users.extraGroups.ircd.gid = config.ids.gids.ircd; + users.groups.ircd.gid = config.ids.gids.ircd; systemd.services."ircd-hybrid" = { description = "IRCD Hybrid server"; diff --git a/nixos/modules/services/networking/kippo.nix b/nixos/modules/services/networking/kippo.nix index 834de4fdc09f..40c38254a57c 100644 --- a/nixos/modules/services/networking/kippo.nix +++ b/nixos/modules/services/networking/kippo.nix @@ -73,12 +73,12 @@ rec { ${cfg.extraConfig} ''; - users.extraUsers = singleton { + users.users = singleton { name = "kippo"; description = "kippo web server privilege separation user"; uid = 108; # why does config.ids.uids.kippo give an error? }; - users.extraGroups = singleton { name = "kippo";gid=108; }; + users.groups = singleton { name = "kippo";gid=108; }; systemd.services.kippo = with pkgs; { description = "Kippo Web Server"; diff --git a/nixos/modules/services/networking/kresd.nix b/nixos/modules/services/networking/kresd.nix index aac02b811d71..ca34ff9df4ef 100644 --- a/nixos/modules/services/networking/kresd.nix +++ b/nixos/modules/services/networking/kresd.nix @@ -62,13 +62,13 @@ in config = mkIf cfg.enable { environment.etc."kresd.conf".source = configFile; # not required - users.extraUsers = singleton + users.users = singleton { name = "kresd"; uid = config.ids.uids.kresd; group = "kresd"; description = "Knot-resolver daemon user"; }; - users.extraGroups = singleton + users.groups = singleton { name = "kresd"; gid = config.ids.gids.kresd; }; diff --git a/nixos/modules/services/networking/lambdabot.nix b/nixos/modules/services/networking/lambdabot.nix index 5a61a9f96782..b7c8bd008fe1 100644 --- a/nixos/modules/services/networking/lambdabot.nix +++ b/nixos/modules/services/networking/lambdabot.nix @@ -67,7 +67,7 @@ in }; }; - users.extraUsers.lambdabot = { + users.users.lambdabot = { group = "lambdabot"; description = "Lambdabot daemon user"; home = "/var/lib/lambdabot"; @@ -75,7 +75,7 @@ in uid = config.ids.uids.lambdabot; }; - users.extraGroups.lambdabot.gid = config.ids.gids.lambdabot; + users.groups.lambdabot.gid = config.ids.gids.lambdabot; }; diff --git a/nixos/modules/services/networking/lldpd.nix b/nixos/modules/services/networking/lldpd.nix index db1534edfd7c..dec30cc92f6a 100644 --- a/nixos/modules/services/networking/lldpd.nix +++ b/nixos/modules/services/networking/lldpd.nix @@ -20,13 +20,13 @@ in }; config = mkIf cfg.enable { - users.extraUsers._lldpd = { + users.users._lldpd = { description = "lldpd user"; group = "_lldpd"; home = "/var/run/lldpd"; isSystemUser = true; }; - users.extraGroups._lldpd = {}; + users.groups._lldpd = {}; environment.systemPackages = [ pkgs.lldpd ]; systemd.packages = [ pkgs.lldpd ]; diff --git a/nixos/modules/services/networking/mailpile.nix b/nixos/modules/services/networking/mailpile.nix index e164d41483c7..c42d3d5a44cb 100644 --- a/nixos/modules/services/networking/mailpile.nix +++ b/nixos/modules/services/networking/mailpile.nix @@ -41,14 +41,14 @@ in config = mkIf config.services.mailpile.enable { - users.extraUsers.mailpile = + users.users.mailpile = { uid = config.ids.uids.mailpile; description = "Mailpile user"; createHome = true; home = "/var/lib/mailpile"; }; - users.extraGroups.mailpile = + users.groups.mailpile = { gid = config.ids.gids.mailpile; }; diff --git a/nixos/modules/services/networking/matterbridge.nix b/nixos/modules/services/networking/matterbridge.nix index e2f478405953..1fd63348c16c 100644 --- a/nixos/modules/services/networking/matterbridge.nix +++ b/nixos/modules/services/networking/matterbridge.nix @@ -92,12 +92,12 @@ in warnings = optional options.services.matterbridge.configFile.isDefined "The option services.matterbridge.configFile is insecure and should be replaced with services.matterbridge.configPath"; - users.extraUsers = optional (cfg.user == "matterbridge") + users.users = optional (cfg.user == "matterbridge") { name = "matterbridge"; group = "matterbridge"; }; - users.extraGroups = optional (cfg.group == "matterbridge") + users.groups = optional (cfg.group == "matterbridge") { name = "matterbridge"; }; diff --git a/nixos/modules/services/networking/minidlna.nix b/nixos/modules/services/networking/minidlna.nix index 6401631bf620..1858f03cac1f 100644 --- a/nixos/modules/services/networking/minidlna.nix +++ b/nixos/modules/services/networking/minidlna.nix @@ -84,13 +84,13 @@ in '') cfg.mediaDirs} ''; - users.extraUsers.minidlna = { + users.users.minidlna = { description = "MiniDLNA daemon user"; group = "minidlna"; uid = config.ids.uids.minidlna; }; - users.extraGroups.minidlna.gid = config.ids.gids.minidlna; + users.groups.minidlna.gid = config.ids.gids.minidlna; systemd.services.minidlna = { description = "MiniDLNA Server"; diff --git a/nixos/modules/services/networking/mjpg-streamer.nix b/nixos/modules/services/networking/mjpg-streamer.nix index 1286b0c7ef6c..e0a6c112e3cb 100644 --- a/nixos/modules/services/networking/mjpg-streamer.nix +++ b/nixos/modules/services/networking/mjpg-streamer.nix @@ -49,7 +49,7 @@ in { config = mkIf cfg.enable { - users.extraUsers = optional (cfg.user == "mjpg-streamer") { + users.users = optional (cfg.user == "mjpg-streamer") { name = "mjpg-streamer"; uid = config.ids.uids.mjpg-streamer; group = cfg.group; diff --git a/nixos/modules/services/networking/monero.nix b/nixos/modules/services/networking/monero.nix index 31379189f5de..8241c32bad07 100644 --- a/nixos/modules/services/networking/monero.nix +++ b/nixos/modules/services/networking/monero.nix @@ -197,7 +197,7 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = "monero"; uid = config.ids.uids.monero; description = "Monero daemon user"; @@ -205,7 +205,7 @@ in createHome = true; }; - users.extraGroups = singleton { + users.groups = singleton { name = "monero"; gid = config.ids.gids.monero; }; diff --git a/nixos/modules/services/networking/morty.nix b/nixos/modules/services/networking/morty.nix index b31bec9a8627..f24562f11817 100644 --- a/nixos/modules/services/networking/morty.nix +++ b/nixos/modules/services/networking/morty.nix @@ -72,7 +72,7 @@ in config = mkIf config.services.morty.enable { - users.extraUsers.morty = + users.users.morty = { description = "Morty user"; createHome = true; home = "/var/lib/morty"; diff --git a/nixos/modules/services/networking/mosquitto.nix b/nixos/modules/services/networking/mosquitto.nix index d8135f4d0ffa..332dc541345e 100644 --- a/nixos/modules/services/networking/mosquitto.nix +++ b/nixos/modules/services/networking/mosquitto.nix @@ -218,7 +218,7 @@ in ) cfg.users); }; - users.extraUsers.mosquitto = { + users.users.mosquitto = { description = "Mosquitto MQTT Broker Daemon owner"; group = "mosquitto"; uid = config.ids.uids.mosquitto; @@ -226,7 +226,7 @@ in createHome = true; }; - users.extraGroups.mosquitto.gid = config.ids.gids.mosquitto; + users.groups.mosquitto.gid = config.ids.gids.mosquitto; }; } diff --git a/nixos/modules/services/networking/murmur.nix b/nixos/modules/services/networking/murmur.nix index 873d62dbf341..fcc813e6898f 100644 --- a/nixos/modules/services/networking/murmur.nix +++ b/nixos/modules/services/networking/murmur.nix @@ -238,7 +238,7 @@ in }; config = mkIf cfg.enable { - users.extraUsers.murmur = { + users.users.murmur = { description = "Murmur Service user"; home = "/var/lib/murmur"; createHome = true; @@ -248,7 +248,7 @@ in systemd.services.murmur = { description = "Murmur Chat Service"; wantedBy = [ "multi-user.target" ]; - after = [ "network.target "]; + after = [ "network-online.target "]; serviceConfig = { Type = "forking"; diff --git a/nixos/modules/services/networking/namecoind.nix b/nixos/modules/services/networking/namecoind.nix index 11f7d7e5caef..8de23b442f93 100644 --- a/nixos/modules/services/networking/namecoind.nix +++ b/nixos/modules/services/networking/namecoind.nix @@ -153,7 +153,7 @@ in config = ${configFile} ''; - users.extraUsers = singleton { + users.users = singleton { name = "namecoin"; uid = config.ids.uids.namecoin; description = "Namecoin daemon user"; @@ -161,7 +161,7 @@ in createHome = true; }; - users.extraGroups = singleton { + users.groups = singleton { name = "namecoin"; gid = config.ids.gids.namecoin; }; diff --git a/nixos/modules/services/networking/networkmanager.nix b/nixos/modules/services/networking/networkmanager.nix index 4e51725b19de..b0bc1c83d6b7 100644 --- a/nixos/modules/services/networking/networkmanager.nix +++ b/nixos/modules/services/networking/networkmanager.nix @@ -6,6 +6,9 @@ with lib; let cfg = config.networking.networkmanager; + dynamicHostsEnabled = + cfg.dynamicHosts.enable && cfg.dynamicHosts.hostsDirs != {}; + # /var/lib/misc is for dnsmasq.leases. stateDirs = "/var/lib/NetworkManager /var/lib/dhclient /var/lib/misc"; @@ -317,6 +320,52 @@ in { so you don't need to to that yourself. ''; }; + + dynamicHosts = { + enable = mkOption { + type = types.bool; + default = false; + description = '' + Enabling this option requires the + <option>networking.networkmanager.dns</option> option to be + set to <literal>dnsmasq</literal>. If enabled, the directories + defined by the + <option>networking.networkmanager.dynamicHosts.hostsDirs</option> + option will be set up when the service starts. The dnsmasq instance + managed by NetworkManager will then watch those directories for + hosts files (see the <literal>--hostsdir</literal> option of + dnsmasq). This way a non-privileged user can add or override DNS + entries on the local system (depending on what hosts directories + that are configured).. + ''; + }; + hostsDirs = mkOption { + type = with types; attrsOf (submodule { + options = { + user = mkOption { + type = types.str; + default = "root"; + description = '' + The user that will own the hosts directory. + ''; + }; + group = mkOption { + type = types.str; + default = "root"; + description = '' + The group that will own the hosts directory. + ''; + }; + }; + }); + default = {}; + description = '' + Defines a set of directories (relative to + <literal>/run/NetworkManager/hostdirs</literal>) that dnsmasq will + watch for hosts files. + ''; + }; + }; }; }; @@ -325,10 +374,17 @@ in { config = mkIf cfg.enable { - assertions = [{ - assertion = config.networking.wireless.enable == false; - message = "You can not use networking.networkmanager with networking.wireless"; - }]; + assertions = [ + { assertion = config.networking.wireless.enable == false; + message = "You can not use networking.networkmanager with networking.wireless"; + } + { assertion = !dynamicHostsEnabled || (dynamicHostsEnabled && cfg.dns == "dnsmasq"); + message = '' + To use networking.networkmanager.dynamicHosts you also need to set + networking.networkmanager.dns = "dnsmasq" + ''; + } + ]; environment.etc = with cfg.basePackages; [ { source = configFile; @@ -362,11 +418,17 @@ in { ++ lib.imap1 (i: s: { inherit (s) source; target = "NetworkManager/dispatcher.d/${dispatcherTypesSubdirMap.${s.type}}03userscript${lib.fixedWidthNumber 4 i}"; - }) cfg.dispatcherScripts; + }) cfg.dispatcherScripts + ++ optional (dynamicHostsEnabled) + { target = "NetworkManager/dnsmasq.d/dyndns.conf"; + text = concatMapStrings (n: '' + hostsdir=/run/NetworkManager/hostsdirs/${n} + '') (attrNames cfg.dynamicHosts.hostsDirs); + }; environment.systemPackages = cfg.packages; - users.extraGroups = [{ + users.groups = [{ name = "networkmanager"; gid = config.ids.gids.networkmanager; } @@ -374,7 +436,7 @@ in { name = "nm-openvpn"; gid = config.ids.gids.nm-openvpn; }]; - users.extraUsers = [{ + users.users = [{ name = "nm-openvpn"; uid = config.ids.uids.nm-openvpn; extraGroups = [ "networkmanager" ]; @@ -398,6 +460,21 @@ in { ''; }; + systemd.services.nm-setup-hostsdirs = mkIf dynamicHostsEnabled { + wantedBy = [ "network-manager.service" ]; + before = [ "network-manager.service" ]; + partOf = [ "network-manager.service" ]; + script = concatStrings (mapAttrsToList (n: d: '' + mkdir -p "/run/NetworkManager/hostsdirs/${n}" + chown "${d.user}:${d.group}" "/run/NetworkManager/hostsdirs/${n}" + chmod 0775 "/run/NetworkManager/hostsdirs/${n}" + '') cfg.dynamicHosts.hostsDirs); + serviceConfig = { + Type = "oneshot"; + RemainAfterExist = true; + }; + }; + # Turn off NixOS' network management networking = { useDHCP = false; diff --git a/nixos/modules/services/networking/ngircd.nix b/nixos/modules/services/networking/ngircd.nix index 6a5290ffdee2..4b2fa7795922 100644 --- a/nixos/modules/services/networking/ngircd.nix +++ b/nixos/modules/services/networking/ngircd.nix @@ -51,7 +51,7 @@ in { serviceConfig.User = "ngircd"; }; - users.extraUsers.ngircd = { + users.users.ngircd = { uid = config.ids.uids.ngircd; description = "ngircd user."; }; diff --git a/nixos/modules/services/networking/nix-serve.nix b/nixos/modules/services/networking/nix-serve.nix index 8499e7c0f7c4..e83cad949ae8 100644 --- a/nixos/modules/services/networking/nix-serve.nix +++ b/nixos/modules/services/networking/nix-serve.nix @@ -64,7 +64,7 @@ in }; }; - users.extraUsers.nix-serve = { + users.users.nix-serve = { description = "Nix-serve user"; uid = config.ids.uids.nix-serve; }; diff --git a/nixos/modules/services/networking/nntp-proxy.nix b/nixos/modules/services/networking/nntp-proxy.nix index 7eebecb23b00..d24d6f77a491 100644 --- a/nixos/modules/services/networking/nntp-proxy.nix +++ b/nixos/modules/services/networking/nntp-proxy.nix @@ -210,7 +210,7 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton + users.users = singleton { name = proxyUser; uid = config.ids.uids.nntp-proxy; description = "NNTP-Proxy daemon user"; diff --git a/nixos/modules/services/networking/nsd.nix b/nixos/modules/services/networking/nsd.nix index fc910e59c323..cde47bf23eae 100644 --- a/nixos/modules/services/networking/nsd.nix +++ b/nixos/modules/services/networking/nsd.nix @@ -897,12 +897,12 @@ in environment.systemPackages = [ nsdPkg ]; - users.extraGroups = singleton { + users.groups = singleton { name = username; gid = config.ids.gids.nsd; }; - users.extraUsers = singleton { + users.users = singleton { name = username; description = "NSD service user"; home = stateDir; diff --git a/nixos/modules/services/networking/ntpd.nix b/nixos/modules/services/networking/ntpd.nix index 88e6dbf22b9e..342350d49ab3 100644 --- a/nixos/modules/services/networking/ntpd.nix +++ b/nixos/modules/services/networking/ntpd.nix @@ -67,7 +67,7 @@ in environment.systemPackages = [ pkgs.ntp ]; services.timesyncd.enable = mkForce false; - users.extraUsers = singleton + users.users = singleton { name = ntpUser; uid = config.ids.uids.ntp; description = "NTP daemon user"; diff --git a/nixos/modules/services/networking/nylon.nix b/nixos/modules/services/networking/nylon.nix index 4864ecf3f92f..b7b59d95bf02 100644 --- a/nixos/modules/services/networking/nylon.nix +++ b/nixos/modules/services/networking/nylon.nix @@ -151,7 +151,7 @@ in config = mkIf (length(enabledNylons) > 0) { - users.extraUsers.nylon = { + users.users.nylon = { group = "nylon"; description = "Nylon SOCKS Proxy"; home = homeDir; @@ -159,7 +159,7 @@ in uid = config.ids.uids.nylon; }; - users.extraGroups.nylon.gid = config.ids.gids.nylon; + users.groups.nylon.gid = config.ids.gids.nylon; systemd.services = fold (a: b: a // b) {} nylonUnits; diff --git a/nixos/modules/services/networking/oidentd.nix b/nixos/modules/services/networking/oidentd.nix index ba7acd879546..8cf34623ab5e 100644 --- a/nixos/modules/services/networking/oidentd.nix +++ b/nixos/modules/services/networking/oidentd.nix @@ -32,13 +32,13 @@ with lib; optionalString config.networking.enableIPv6 " -a ::"; }; - users.extraUsers.oidentd = { + users.users.oidentd = { description = "Ident Protocol daemon user"; group = "oidentd"; uid = config.ids.uids.oidentd; }; - users.extraGroups.oidentd.gid = config.ids.gids.oidentd; + users.groups.oidentd.gid = config.ids.gids.oidentd; }; diff --git a/nixos/modules/services/networking/openntpd.nix b/nixos/modules/services/networking/openntpd.nix index 241038ca12ed..57638ebc9c01 100644 --- a/nixos/modules/services/networking/openntpd.nix +++ b/nixos/modules/services/networking/openntpd.nix @@ -59,7 +59,7 @@ in environment.etc."ntpd.conf".text = configFile; - users.extraUsers = singleton { + users.users = singleton { name = "ntp"; uid = config.ids.uids.ntp; description = "OpenNTP daemon user"; diff --git a/nixos/modules/services/networking/owamp.nix b/nixos/modules/services/networking/owamp.nix index a0d3e70d8e57..821a0258f4be 100644 --- a/nixos/modules/services/networking/owamp.nix +++ b/nixos/modules/services/networking/owamp.nix @@ -17,13 +17,13 @@ in ###### implementation config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = "owamp"; group = "owamp"; description = "Owamp daemon"; }; - users.extraGroups = singleton { + users.groups = singleton { name = "owamp"; }; diff --git a/nixos/modules/services/networking/pdns-recursor.nix b/nixos/modules/services/networking/pdns-recursor.nix index 26be72d2a61e..d07deb9dcc67 100644 --- a/nixos/modules/services/networking/pdns-recursor.nix +++ b/nixos/modules/services/networking/pdns-recursor.nix @@ -128,7 +128,7 @@ in { config = mkIf cfg.enable { - users.extraUsers."${username}" = { + users.users."${username}" = { home = dataDir; createHome = true; uid = config.ids.uids.pdns-recursor; diff --git a/nixos/modules/services/networking/pdnsd.nix b/nixos/modules/services/networking/pdnsd.nix index f4467b818958..f5b174dd7b7b 100644 --- a/nixos/modules/services/networking/pdnsd.nix +++ b/nixos/modules/services/networking/pdnsd.nix @@ -62,14 +62,14 @@ in }; config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = pdnsdUser; uid = config.ids.uids.pdnsd; group = pdnsdGroup; description = "pdnsd user"; }; - users.extraGroups = singleton { + users.groups = singleton { name = pdnsdGroup; gid = config.ids.gids.pdnsd; }; diff --git a/nixos/modules/services/networking/polipo.nix b/nixos/modules/services/networking/polipo.nix index 847fc88ead4c..529115a1c6e1 100644 --- a/nixos/modules/services/networking/polipo.nix +++ b/nixos/modules/services/networking/polipo.nix @@ -85,7 +85,7 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton + users.users = singleton { name = "polipo"; uid = config.ids.uids.polipo; description = "Polipo caching proxy user"; @@ -93,7 +93,7 @@ in createHome = true; }; - users.extraGroups = singleton + users.groups = singleton { name = "polipo"; gid = config.ids.gids.polipo; members = [ "polipo" ]; diff --git a/nixos/modules/services/networking/prayer.nix b/nixos/modules/services/networking/prayer.nix index 8cd4a0823534..f63f86496bee 100644 --- a/nixos/modules/services/networking/prayer.nix +++ b/nixos/modules/services/networking/prayer.nix @@ -72,14 +72,14 @@ in config = mkIf config.services.prayer.enable { environment.systemPackages = [ prayer ]; - users.extraUsers = singleton + users.users = singleton { name = prayerUser; uid = config.ids.uids.prayer; description = "Prayer daemon user"; home = stateDir; }; - users.extraGroups = singleton + users.groups = singleton { name = prayerGroup; gid = config.ids.gids.prayer; }; diff --git a/nixos/modules/services/networking/prosody.nix b/nixos/modules/services/networking/prosody.nix index 1b4f81f6b56e..a37ef98caec6 100644 --- a/nixos/modules/services/networking/prosody.nix +++ b/nixos/modules/services/networking/prosody.nix @@ -487,7 +487,7 @@ in '') cfg.virtualHosts) } ''; - users.extraUsers.prosody = mkIf (cfg.user == "prosody") { + users.users.prosody = mkIf (cfg.user == "prosody") { uid = config.ids.uids.prosody; description = "Prosody user"; createHome = true; @@ -495,7 +495,7 @@ in home = "${cfg.dataDir}"; }; - users.extraGroups.prosody = mkIf (cfg.group == "prosody") { + users.groups.prosody = mkIf (cfg.group == "prosody") { gid = config.ids.gids.prosody; }; diff --git a/nixos/modules/services/networking/quagga.nix b/nixos/modules/services/networking/quagga.nix index 22204e53203c..5acdd5af8f8f 100644 --- a/nixos/modules/services/networking/quagga.nix +++ b/nixos/modules/services/networking/quagga.nix @@ -95,26 +95,25 @@ in { ###### interface - - options.services.quagga = + imports = [ { - - zebra = (serviceOptions "zebra") // { - - enable = mkOption { - type = types.bool; - default = any isEnabled services; - description = '' - Whether to enable the Zebra routing manager. - - The Zebra routing manager is automatically enabled - if any routing protocols are configured. - ''; + options.services.quagga = { + zebra = (serviceOptions "zebra") // { + enable = mkOption { + type = types.bool; + default = any isEnabled services; + description = '' + Whether to enable the Zebra routing manager. + + The Zebra routing manager is automatically enabled + if any routing protocols are configured. + ''; + }; }; - }; - - } // (genAttrs services serviceOptions); + } + { options.services.quagga = (genAttrs services serviceOptions); } + ]; ###### implementation diff --git a/nixos/modules/services/networking/quassel.nix b/nixos/modules/services/networking/quassel.nix index bc7d6912b5ce..d850bb8b1305 100644 --- a/nixos/modules/services/networking/quassel.nix +++ b/nixos/modules/services/networking/quassel.nix @@ -72,14 +72,14 @@ in config = mkIf cfg.enable { - users.extraUsers = mkIf (cfg.user == null) [ + users.users = mkIf (cfg.user == null) [ { name = "quassel"; description = "Quassel IRC client daemon"; group = "quassel"; uid = config.ids.uids.quassel; }]; - users.extraGroups = mkIf (cfg.user == null) [ + users.groups = mkIf (cfg.user == null) [ { name = "quassel"; gid = config.ids.gids.quassel; }]; diff --git a/nixos/modules/services/networking/radicale.nix b/nixos/modules/services/networking/radicale.nix index 97ee05046ff0..2afab5ee3b3e 100644 --- a/nixos/modules/services/networking/radicale.nix +++ b/nixos/modules/services/networking/radicale.nix @@ -59,7 +59,7 @@ in config = mkIf cfg.enable { environment.systemPackages = [ cfg.package ]; - users.extraUsers = singleton + users.users = singleton { name = "radicale"; uid = config.ids.uids.radicale; description = "radicale user"; @@ -67,7 +67,7 @@ in createHome = true; }; - users.extraGroups = singleton + users.groups = singleton { name = "radicale"; gid = config.ids.gids.radicale; }; diff --git a/nixos/modules/services/networking/radvd.nix b/nixos/modules/services/networking/radvd.nix index 85d7f9e4a41b..020faa34922a 100644 --- a/nixos/modules/services/networking/radvd.nix +++ b/nixos/modules/services/networking/radvd.nix @@ -52,7 +52,7 @@ in config = mkIf cfg.enable { - users.extraUsers.radvd = + users.users.radvd = { uid = config.ids.uids.radvd; description = "Router Advertisement Daemon User"; }; diff --git a/nixos/modules/services/networking/rdnssd.nix b/nixos/modules/services/networking/rdnssd.nix index a102242eae71..887772f6e5f0 100644 --- a/nixos/modules/services/networking/rdnssd.nix +++ b/nixos/modules/services/networking/rdnssd.nix @@ -64,7 +64,7 @@ in }; }; - users.extraUsers.rdnssd = { + users.users.rdnssd = { description = "RDNSSD Daemon User"; uid = config.ids.uids.rdnssd; }; diff --git a/nixos/modules/services/networking/resilio.nix b/nixos/modules/services/networking/resilio.nix index 2956a5ecbc04..ee7f82ac7bee 100644 --- a/nixos/modules/services/networking/resilio.nix +++ b/nixos/modules/services/networking/resilio.nix @@ -236,7 +236,7 @@ in } ]; - users.extraUsers.rslsync = { + users.users.rslsync = { description = "Resilio Sync Service user"; home = cfg.storagePath; createHome = true; @@ -244,7 +244,7 @@ in group = "rslsync"; }; - users.extraGroups = [ { name = "rslsync"; } ]; + users.groups = [ { name = "rslsync"; } ]; systemd.services.resilio = with pkgs; { description = "Resilio Sync Service"; diff --git a/nixos/modules/services/networking/rpcbind.nix b/nixos/modules/services/networking/rpcbind.nix index cddcb09054e0..0a5df6987092 100644 --- a/nixos/modules/services/networking/rpcbind.nix +++ b/nixos/modules/services/networking/rpcbind.nix @@ -37,7 +37,7 @@ with lib; wantedBy = [ "multi-user.target" ]; }; - users.extraUsers.rpc = { + users.users.rpc = { group = "nogroup"; uid = config.ids.uids.rpc; }; diff --git a/nixos/modules/services/networking/sabnzbd.nix b/nixos/modules/services/networking/sabnzbd.nix index cacf753fdcd7..62b24d4377f8 100644 --- a/nixos/modules/services/networking/sabnzbd.nix +++ b/nixos/modules/services/networking/sabnzbd.nix @@ -41,7 +41,7 @@ in config = mkIf cfg.enable { - users.extraUsers.sabnzbd = { + users.users.sabnzbd = { uid = config.ids.uids.sabnzbd; group = "sabnzbd"; description = "sabnzbd user"; @@ -49,7 +49,7 @@ in createHome = true; }; - users.extraGroups.sabnzbd = { + users.groups.sabnzbd = { gid = config.ids.gids.sabnzbd; }; diff --git a/nixos/modules/services/networking/searx.nix b/nixos/modules/services/networking/searx.nix index c7a128ae212d..9412d0ef8a62 100644 --- a/nixos/modules/services/networking/searx.nix +++ b/nixos/modules/services/networking/searx.nix @@ -47,14 +47,14 @@ in config = mkIf config.services.searx.enable { - users.extraUsers.searx = + users.users.searx = { uid = config.ids.uids.searx; description = "Searx user"; createHome = true; home = "/var/lib/searx"; }; - users.extraGroups.searx = + users.groups.searx = { gid = config.ids.gids.searx; }; diff --git a/nixos/modules/services/networking/seeks.nix b/nixos/modules/services/networking/seeks.nix index f5bc60be3457..40729225b6d0 100644 --- a/nixos/modules/services/networking/seeks.nix +++ b/nixos/modules/services/networking/seeks.nix @@ -46,14 +46,14 @@ in config = mkIf config.services.seeks.enable { - users.extraUsers.seeks = + users.users.seeks = { uid = config.ids.uids.seeks; description = "Seeks user"; createHome = true; home = "/var/lib/seeks"; }; - users.extraGroups.seeks = + users.groups.seeks = { gid = config.ids.gids.seeks; }; diff --git a/nixos/modules/services/networking/shairport-sync.nix b/nixos/modules/services/networking/shairport-sync.nix index 908de9efd6fb..0b87140b0d8d 100644 --- a/nixos/modules/services/networking/shairport-sync.nix +++ b/nixos/modules/services/networking/shairport-sync.nix @@ -55,7 +55,7 @@ in services.avahi.publish.enable = true; services.avahi.publish.userServices = true; - users.extraUsers = singleton + users.users = singleton { name = cfg.user; description = "Shairport user"; isSystemUser = true; diff --git a/nixos/modules/services/networking/shout.nix b/nixos/modules/services/networking/shout.nix index 3664c2857739..9784f1d160f3 100644 --- a/nixos/modules/services/networking/shout.nix +++ b/nixos/modules/services/networking/shout.nix @@ -82,7 +82,7 @@ in { }; config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = "shout"; uid = config.ids.uids.shout; description = "Shout daemon user"; diff --git a/nixos/modules/services/networking/smokeping.nix b/nixos/modules/services/networking/smokeping.nix index c5c131cb4c50..9ba6e48f417c 100644 --- a/nixos/modules/services/networking/smokeping.nix +++ b/nixos/modules/services/networking/smokeping.nix @@ -278,7 +278,7 @@ in "fping6".source = "${pkgs.fping}/bin/fping6"; }; environment.systemPackages = [ pkgs.fping ]; - users.extraUsers = singleton { + users.users = singleton { name = cfg.user; isNormalUser = false; isSystemUser = true; diff --git a/nixos/modules/services/networking/sniproxy.nix b/nixos/modules/services/networking/sniproxy.nix index 4d0f36923293..0345c12d3afe 100644 --- a/nixos/modules/services/networking/sniproxy.nix +++ b/nixos/modules/services/networking/sniproxy.nix @@ -82,14 +82,14 @@ in }; }; - users.extraUsers = mkIf (cfg.user == "sniproxy") { + users.users = mkIf (cfg.user == "sniproxy") { sniproxy = { group = cfg.group; uid = config.ids.uids.sniproxy; }; }; - users.extraGroups = mkIf (cfg.group == "sniproxy") { + users.groups = mkIf (cfg.group == "sniproxy") { sniproxy = { gid = config.ids.gids.sniproxy; }; diff --git a/nixos/modules/services/networking/spiped.nix b/nixos/modules/services/networking/spiped.nix index 005d7182351a..e60d9abf42a6 100644 --- a/nixos/modules/services/networking/spiped.nix +++ b/nixos/modules/services/networking/spiped.nix @@ -171,8 +171,8 @@ in message = "A pipe must either encrypt or decrypt"; }) cfg.config; - users.extraGroups.spiped.gid = config.ids.gids.spiped; - users.extraUsers.spiped = { + users.groups.spiped.gid = config.ids.gids.spiped; + users.users.spiped = { description = "Secure Pipe Service user"; group = "spiped"; uid = config.ids.uids.spiped; diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix index 961e72b2b810..8b04fac089ef 100644 --- a/nixos/modules/services/networking/ssh/sshd.nix +++ b/nixos/modules/services/networking/ssh/sshd.nix @@ -49,7 +49,7 @@ let ${concatMapStrings (f: readFile f + "\n") u.openssh.authorizedKeys.keyFiles} ''; }; - usersWithKeys = attrValues (flip filterAttrs config.users.extraUsers (n: u: + usersWithKeys = attrValues (flip filterAttrs config.users.users (n: u: length u.openssh.authorizedKeys.keys != 0 || length u.openssh.authorizedKeys.keyFiles != 0 )); in listToAttrs (map mkAuthKeyFile usersWithKeys); @@ -326,7 +326,7 @@ in config = mkIf cfg.enable { - users.extraUsers.sshd = + users.users.sshd = { isSystemUser = true; description = "SSH privilege separation user"; }; diff --git a/nixos/modules/services/networking/supplicant.nix b/nixos/modules/services/networking/supplicant.nix index dc90a4bcc620..3c4321ab9e9d 100644 --- a/nixos/modules/services/networking/supplicant.nix +++ b/nixos/modules/services/networking/supplicant.nix @@ -183,7 +183,7 @@ in example = literalExample '' { "wlan0 wlan1" = { - configFile = "/etc/wpa_supplicant"; + configFile.path = "/etc/wpa_supplicant.conf"; userControlled.group = "network"; extraConf = ''' ap_scan=1 diff --git a/nixos/modules/services/networking/supybot.nix b/nixos/modules/services/networking/supybot.nix index 2cfb9fc9b923..64eb11068329 100644 --- a/nixos/modules/services/networking/supybot.nix +++ b/nixos/modules/services/networking/supybot.nix @@ -45,7 +45,7 @@ in environment.systemPackages = [ pkgs.pythonPackages.limnoria ]; - users.extraUsers = singleton { + users.users = singleton { name = "supybot"; uid = config.ids.uids.supybot; group = "supybot"; @@ -54,7 +54,7 @@ in createHome = true; }; - users.extraGroups.supybot = { + users.groups.supybot = { name = "supybot"; gid = config.ids.gids.supybot; }; diff --git a/nixos/modules/services/networking/syncthing.nix b/nixos/modules/services/networking/syncthing.nix index e485c073cbdd..c610b3b66606 100644 --- a/nixos/modules/services/networking/syncthing.nix +++ b/nixos/modules/services/networking/syncthing.nix @@ -103,7 +103,7 @@ in { systemd.packages = [ pkgs.syncthing ]; users = mkIf (cfg.user == defaultUser) { - extraUsers."${defaultUser}" = + users."${defaultUser}" = { group = cfg.group; home = cfg.dataDir; createHome = true; @@ -111,7 +111,7 @@ in { description = "Syncthing daemon user"; }; - extraGroups."${defaultUser}".gid = + groups."${defaultUser}".gid = config.ids.gids.syncthing; }; diff --git a/nixos/modules/services/networking/tcpcrypt.nix b/nixos/modules/services/networking/tcpcrypt.nix index ee005e11aa32..a0ccb9950094 100644 --- a/nixos/modules/services/networking/tcpcrypt.nix +++ b/nixos/modules/services/networking/tcpcrypt.nix @@ -29,7 +29,7 @@ in config = mkIf cfg.enable { - users.extraUsers = singleton { + users.users = singleton { name = "tcpcryptd"; uid = config.ids.uids.tcpcryptd; description = "tcpcrypt daemon user"; diff --git a/nixos/modules/services/networking/tinc.nix b/nixos/modules/services/networking/tinc.nix index 77bcdae80191..35cdddc590b8 100644 --- a/nixos/modules/services/networking/tinc.nix +++ b/nixos/modules/services/networking/tinc.nix @@ -209,7 +209,7 @@ in }; in [ cli-wrappers ]; - users.extraUsers = flip mapAttrs' cfg.networks (network: _: + users.users = flip mapAttrs' cfg.networks (network: _: nameValuePair ("tinc.${network}") ({ description = "Tinc daemon user for ${network}"; isSystemUser = true; diff --git a/nixos/modules/services/networking/tinydns.nix b/nixos/modules/services/networking/tinydns.nix index 184888ef05da..7d5db71601ef 100644 --- a/nixos/modules/services/networking/tinydns.nix +++ b/nixos/modules/services/networking/tinydns.nix @@ -32,7 +32,7 @@ with lib; config = mkIf config.services.tinydns.enable { environment.systemPackages = [ pkgs.djbdns ]; - users.extraUsers.tinydns = {}; + users.users.tinydns = {}; systemd.services.tinydns = { description = "djbdns tinydns server"; diff --git a/nixos/modules/services/networking/tox-bootstrapd.nix b/nixos/modules/services/networking/tox-bootstrapd.nix index cb0e6b158651..1d3492151690 100644 --- a/nixos/modules/services/networking/tox-bootstrapd.nix +++ b/nixos/modules/services/networking/tox-bootstrapd.nix @@ -56,7 +56,7 @@ in config = mkIf config.services.toxBootstrapd.enable { - users.extraUsers = singleton + users.users = singleton { name = "tox-bootstrapd"; uid = config.ids.uids.tox-bootstrapd; description = "Tox bootstrap daemon user"; diff --git a/nixos/modules/services/networking/toxvpn.nix b/nixos/modules/services/networking/toxvpn.nix index 5e13402d7645..f5baea9222be 100644 --- a/nixos/modules/services/networking/toxvpn.nix +++ b/nixos/modules/services/networking/toxvpn.nix @@ -57,7 +57,7 @@ with lib; environment.systemPackages = [ pkgs.toxvpn ]; - users.extraUsers = { + users.users = { toxvpn = { uid = config.ids.uids.toxvpn; home = "/var/lib/toxvpn"; diff --git a/nixos/modules/services/networking/tvheadend.nix b/nixos/modules/services/networking/tvheadend.nix index cdd8747ba898..f495c39967e8 100644 --- a/nixos/modules/services/networking/tvheadend.nix +++ b/nixos/modules/services/networking/tvheadend.nix @@ -3,7 +3,7 @@ with lib; let cfg = config.services.tvheadend; - pidFile = "${config.users.extraUsers.tvheadend.home}/tvheadend.pid"; + pidFile = "${config.users.users.tvheadend.home}/tvheadend.pid"; in { @@ -25,7 +25,7 @@ in }; config = mkIf cfg.enable { - users.extraUsers.tvheadend = { + users.users.tvheadend = { description = "Tvheadend Service user"; home = "/var/lib/tvheadend"; createHome = true; diff --git a/nixos/modules/services/networking/unifi.nix b/nixos/modules/services/networking/unifi.nix index 94958bfdd83e..ac10e77ba306 100644 --- a/nixos/modules/services/networking/unifi.nix +++ b/nixos/modules/services/networking/unifi.nix @@ -114,7 +114,7 @@ in config = mkIf cfg.enable { - users.extraUsers.unifi = { + users.users.unifi = { uid = config.ids.uids.unifi; description = "UniFi controller daemon user"; home = "${stateDir}"; diff --git a/nixos/modules/services/networking/vsftpd.nix b/nixos/modules/services/networking/vsftpd.nix index 6b3d658bd852..1f9107c3ce9c 100644 --- a/nixos/modules/services/networking/vsftpd.nix +++ b/nixos/modules/services/networking/vsftpd.nix @@ -193,7 +193,7 @@ in message = "vsftpd: If forceLocalLoginsSSL or forceLocalDataSSL is true then a rsaCertFile must be provided!"; }; - users.extraUsers = + users.users = [ { name = "vsftpd"; uid = config.ids.uids.vsftpd; description = "VSFTPD user"; @@ -207,7 +207,7 @@ in home = cfg.anonymousUserHome; }; - users.extraGroups.ftp.gid = config.ids.gids.ftp; + users.groups.ftp.gid = config.ids.gids.ftp; # If you really have to access root via FTP use mkOverride or userlistDeny # = false and whitelist root diff --git a/nixos/modules/services/networking/znc.nix b/nixos/modules/services/networking/znc.nix index 72313ab2ee14..76e4899c85ee 100644 --- a/nixos/modules/services/networking/znc.nix +++ b/nixos/modules/services/networking/znc.nix @@ -402,7 +402,7 @@ in script = "${pkgs.znc}/bin/znc --foreground --datadir ${cfg.dataDir} ${toString cfg.extraFlags}"; }; - users.extraUsers = optional (cfg.user == defaultUser) + users.users = optional (cfg.user == defaultUser) { name = defaultUser; description = "ZNC server daemon owner"; group = defaultUser; @@ -411,7 +411,7 @@ in createHome = true; }; - users.extraGroups = optional (cfg.user == defaultUser) + users.groups = optional (cfg.user == defaultUser) { name = defaultUser; gid = config.ids.gids.znc; members = [ defaultUser ]; diff --git a/nixos/modules/services/printing/cupsd.nix b/nixos/modules/services/printing/cupsd.nix index c4147986439c..b074d15cbec1 100644 --- a/nixos/modules/services/printing/cupsd.nix +++ b/nixos/modules/services/printing/cupsd.nix @@ -268,7 +268,7 @@ in config = mkIf config.services.printing.enable { - users.extraUsers = singleton + users.users = singleton { name = "cups"; uid = config.ids.uids.cups; group = "lp"; diff --git a/nixos/modules/services/scheduling/atd.nix b/nixos/modules/services/scheduling/atd.nix index 77a3f6b51e80..a32907647a0d 100644 --- a/nixos/modules/services/scheduling/atd.nix +++ b/nixos/modules/services/scheduling/atd.nix @@ -57,14 +57,14 @@ in security.pam.services.atd = {}; - users.extraUsers = singleton + users.users = singleton { name = "atd"; uid = config.ids.uids.atd; description = "atd user"; home = "/var/empty"; }; - users.extraGroups = singleton + users.groups = singleton { name = "atd"; gid = config.ids.gids.atd; }; diff --git a/nixos/modules/services/scheduling/chronos.nix b/nixos/modules/services/scheduling/chronos.nix index 6c39997fec88..9a8ed4c09ac1 100644 --- a/nixos/modules/services/scheduling/chronos.nix +++ b/nixos/modules/services/scheduling/chronos.nix @@ -49,6 +49,6 @@ in { }; }; - users.extraUsers.chronos.uid = config.ids.uids.chronos; + users.users.chronos.uid = config.ids.uids.chronos; }; } diff --git a/nixos/modules/services/scheduling/fcron.nix b/nixos/modules/services/scheduling/fcron.nix index 0ea41f3c3985..ae3828977753 100644 --- a/nixos/modules/services/scheduling/fcron.nix +++ b/nixos/modules/services/scheduling/fcron.nix @@ -115,7 +115,7 @@ in ]; environment.systemPackages = [ pkgs.fcron ]; - users.extraUsers.fcron = { + users.users.fcron = { uid = config.ids.uids.fcron; home = "/var/spool/fcron"; group = "fcron"; diff --git a/nixos/modules/services/scheduling/marathon.nix b/nixos/modules/services/scheduling/marathon.nix index 19c9a708f21f..0961a67770e1 100644 --- a/nixos/modules/services/scheduling/marathon.nix +++ b/nixos/modules/services/scheduling/marathon.nix @@ -93,6 +93,6 @@ in { }; }; - users.extraUsers.${cfg.user} = { }; + users.users.${cfg.user} = { }; }; } diff --git a/nixos/modules/services/search/hound.nix b/nixos/modules/services/search/hound.nix index a94a851e80ec..6740928db9a7 100644 --- a/nixos/modules/services/search/hound.nix +++ b/nixos/modules/services/search/hound.nix @@ -88,12 +88,12 @@ in { }; config = mkIf cfg.enable { - users.extraGroups = optional (cfg.group == "hound") { + users.groups = optional (cfg.group == "hound") { name = "hound"; gid = config.ids.gids.hound; }; - users.extraUsers = optional (cfg.user == "hound") { + users.users = optional (cfg.user == "hound") { name = "hound"; description = "hound code search"; createHome = true; diff --git a/nixos/modules/services/search/kibana.nix b/nixos/modules/services/search/kibana.nix index 9d7d2d799189..5885a72c6628 100644 --- a/nixos/modules/services/search/kibana.nix +++ b/nixos/modules/services/search/kibana.nix @@ -193,7 +193,7 @@ in { environment.systemPackages = [ cfg.package ]; - users.extraUsers = singleton { + users.users = singleton { name = "kibana"; uid = config.ids.uids.kibana; description = "Kibana service user"; diff --git a/nixos/modules/services/security/clamav.nix b/nixos/modules/services/security/clamav.nix index 4161c61ed375..9ad0095252de 100644 --- a/nixos/modules/services/security/clamav.nix +++ b/nixos/modules/services/security/clamav.nix @@ -79,7 +79,7 @@ in config = mkIf (cfg.updater.enable || cfg.daemon.enable) { environment.systemPackages = [ pkg ]; - users.extraUsers = singleton { + users.users = singleton { name = clamavUser; uid = config.ids.uids.clamav; group = clamavGroup; @@ -87,7 +87,7 @@ in home = stateDir; }; - users.extraGroups = singleton { + users.groups = singleton { name = clamavGroup; gid = config.ids.gids.clamav; }; diff --git a/nixos/modules/services/security/fprot.nix b/nixos/modules/services/security/fprot.nix index a12aa01503e3..b1ca4ab23452 100644 --- a/nixos/modules/services/security/fprot.nix +++ b/nixos/modules/services/security/fprot.nix @@ -53,14 +53,14 @@ in { target = "f-prot.conf"; }; - users.extraUsers = singleton + users.users = singleton { name = fprotUser; uid = config.ids.uids.fprot; description = "F-Prot daemon user"; home = stateDir; }; - users.extraGroups = singleton + users.groups = singleton { name = fprotGroup; gid = config.ids.gids.fprot; }; diff --git a/nixos/modules/services/security/oauth2_proxy.nix b/nixos/modules/services/security/oauth2_proxy.nix index 96d78630e6d1..0c5fe8c0ef5f 100644 --- a/nixos/modules/services/security/oauth2_proxy.nix +++ b/nixos/modules/services/security/oauth2_proxy.nix @@ -544,7 +544,7 @@ in cookie.secret = mkDefault null; }; - users.extraUsers.oauth2_proxy = { + users.users.oauth2_proxy = { description = "OAuth2 Proxy"; }; diff --git a/nixos/modules/services/security/oauth2_proxy_nginx.nix b/nixos/modules/services/security/oauth2_proxy_nginx.nix new file mode 100644 index 000000000000..2aa2c57fd22c --- /dev/null +++ b/nixos/modules/services/security/oauth2_proxy_nginx.nix @@ -0,0 +1,64 @@ +{ pkgs, config, lib, ... }: +with lib; +let + cfg = config.services.oauth2_proxy.nginx; +in +{ + options.services.oauth2_proxy.nginx = { + proxy = mkOption { + type = types.string; + default = config.services.oauth2_proxy.httpAddress; + description = '' + The address of the reverse proxy endpoint for oauth2_proxy + ''; + }; + virtualHosts = mkOption { + type = types.listOf types.string; + default = []; + description = '' + A list of nginx virtual hosts to put behind the oauth2 proxy + ''; + }; + }; + config.services.oauth2_proxy = mkIf (cfg.virtualHosts != [] && (hasPrefix "127.0.0.1:" cfg.proxy)) { + enable = true; + }; + config.services.nginx = mkMerge ((optional (cfg.virtualHosts != []) { + recommendedProxySettings = true; # needed because duplicate headers + }) ++ (map (vhost: { + virtualHosts.${vhost} = { + locations."/oauth2/" = { + proxyPass = cfg.proxy; + extraConfig = '' + proxy_set_header X-Scheme $scheme; + proxy_set_header X-Auth-Request-Redirect $request_uri; + ''; + }; + locations."/oauth2/auth" = { + proxyPass = cfg.proxy; + extraConfig = '' + proxy_set_header X-Scheme $scheme; + # nginx auth_request includes headers but not body + proxy_set_header Content-Length ""; + proxy_pass_request_body off; + ''; + }; + locations."/".extraConfig = '' + auth_request /oauth2/auth; + error_page 401 = /oauth2/sign_in; + + # pass information via X-User and X-Email headers to backend, + # requires running with --set-xauthrequest flag + auth_request_set $user $upstream_http_x_auth_request_user; + auth_request_set $email $upstream_http_x_auth_request_email; + proxy_set_header X-User $user; + proxy_set_header X-Email $email; + + # if you enabled --cookie-refresh, this is needed for it to work with auth_request + auth_request_set $auth_cookie $upstream_http_set_cookie; + add_header Set-Cookie $auth_cookie; + ''; + + }; + }) cfg.virtualHosts)); +} diff --git a/nixos/modules/services/security/tor.nix b/nixos/modules/services/security/tor.nix index 15200c49d70a..dcb41d187c2b 100644 --- a/nixos/modules/services/security/tor.nix +++ b/nixos/modules/services/security/tor.nix @@ -686,8 +686,8 @@ in always create a container/VM with a separate Tor daemon instance. ''; - users.extraGroups.tor.gid = config.ids.gids.tor; - users.extraUsers.tor = + users.groups.tor.gid = config.ids.gids.tor; + users.users.tor = { description = "Tor Daemon User"; createHome = true; home = torDirectory; diff --git a/nixos/modules/services/security/vault.nix b/nixos/modules/services/security/vault.nix index 146afec344ab..47c70cf0687b 100644 --- a/nixos/modules/services/security/vault.nix +++ b/nixos/modules/services/security/vault.nix @@ -97,13 +97,13 @@ in } ]; - users.extraUsers.vault = { + users.users.vault = { name = "vault"; group = "vault"; uid = config.ids.uids.vault; description = "Vault daemon user"; }; - users.extraGroups.vault.gid = config.ids.gids.vault; + users.groups.vault.gid = config.ids.gids.vault; systemd.services.vault = { description = "Vault server daemon"; diff --git a/nixos/modules/services/system/dbus.nix b/nixos/modules/services/system/dbus.nix index 248df7351a8c..e04580218442 100644 --- a/nixos/modules/services/system/dbus.nix +++ b/nixos/modules/services/system/dbus.nix @@ -71,14 +71,14 @@ in target = "dbus-1"; }; - users.extraUsers.messagebus = { + users.users.messagebus = { uid = config.ids.uids.messagebus; description = "D-Bus system message bus daemon user"; home = homeDir; group = "messagebus"; }; - users.extraGroups.messagebus.gid = config.ids.gids.messagebus; + users.groups.messagebus.gid = config.ids.gids.messagebus; systemd.packages = [ pkgs.dbus.daemon ]; diff --git a/nixos/modules/services/system/kerberos.nix b/nixos/modules/services/system/kerberos.nix index 4f2e2fdf662b..d85dee089827 100644 --- a/nixos/modules/services/system/kerberos.nix +++ b/nixos/modules/services/system/kerberos.nix @@ -41,8 +41,8 @@ in flags = "REUSE NAMEINARGS"; protocol = "tcp"; user = "root"; - server = "${pkgs.tcp_wrappers}/sbin/tcpd"; - serverArgs = "${pkgs.heimdalFull}/sbin/kadmind"; + server = "${pkgs.tcp_wrappers}/bin/tcpd"; + serverArgs = "${pkgs.heimdalFull}/bin/kadmind"; }; systemd.services.kdc = { @@ -51,13 +51,13 @@ in preStart = '' mkdir -m 0755 -p ${stateDir} ''; - script = "${heimdalFull}/sbin/kdc"; + script = "${heimdalFull}/bin/kdc"; }; systemd.services.kpasswdd = { description = "Kerberos Password Changing daemon"; wantedBy = [ "multi-user.target" ]; - script = "${heimdalFull}/sbin/kpasswdd"; + script = "${heimdalFull}/bin/kpasswdd"; }; }; diff --git a/nixos/modules/services/system/nscd.nix b/nixos/modules/services/system/nscd.nix index eb4b5281c7c6..11a30ea81ba9 100644 --- a/nixos/modules/services/system/nscd.nix +++ b/nixos/modules/services/system/nscd.nix @@ -41,7 +41,7 @@ in config = mkIf cfg.enable { environment.etc."nscd.conf".text = cfg.config; - users.extraUsers.nscd = + users.users.nscd = { isSystemUser = true; description = "Name service cache daemon user"; }; diff --git a/nixos/modules/services/system/uptimed.nix b/nixos/modules/services/system/uptimed.nix index b20d60968032..3c9978ab2269 100644 --- a/nixos/modules/services/system/uptimed.nix +++ b/nixos/modules/services/system/uptimed.nix @@ -20,7 +20,7 @@ in }; config = mkIf cfg.enable { - users.extraUsers.uptimed = { + users.users.uptimed = { description = "Uptimed daemon user"; home = stateDir; createHome = true; diff --git a/nixos/modules/services/torrent/deluge.nix b/nixos/modules/services/torrent/deluge.nix index bff22cd13594..84f0437b9411 100644 --- a/nixos/modules/services/torrent/deluge.nix +++ b/nixos/modules/services/torrent/deluge.nix @@ -55,7 +55,7 @@ in { environment.systemPackages = [ pkgs.deluge ]; - users.extraUsers.deluge = { + users.users.deluge = { group = "deluge"; uid = config.ids.uids.deluge; home = "/var/lib/deluge/"; @@ -63,6 +63,6 @@ in { description = "Deluge Daemon user"; }; - users.extraGroups.deluge.gid = config.ids.gids.deluge; + users.groups.deluge.gid = config.ids.gids.deluge; }; } diff --git a/nixos/modules/services/torrent/peerflix.nix b/nixos/modules/services/torrent/peerflix.nix index 2e3dd9902d72..bed6661f84d6 100644 --- a/nixos/modules/services/torrent/peerflix.nix +++ b/nixos/modules/services/torrent/peerflix.nix @@ -58,6 +58,6 @@ in { }; }; - users.extraUsers.peerflix.uid = config.ids.uids.peerflix; + users.users.peerflix.uid = config.ids.uids.peerflix; }; } diff --git a/nixos/modules/services/torrent/transmission.nix b/nixos/modules/services/torrent/transmission.nix index 3564afd77f41..bf4fb76d0c0c 100644 --- a/nixos/modules/services/torrent/transmission.nix +++ b/nixos/modules/services/torrent/transmission.nix @@ -113,8 +113,8 @@ in # It's useful to have transmission in path, e.g. for remote control environment.systemPackages = [ pkgs.transmission ]; - users.extraGroups.transmission.gid = config.ids.gids.transmission; - users.extraUsers.transmission = { + users.groups.transmission.gid = config.ids.gids.transmission; + users.users.transmission = { group = "transmission"; uid = config.ids.uids.transmission; description = "Transmission BitTorrent user"; diff --git a/nixos/modules/services/web-apps/atlassian/confluence.nix b/nixos/modules/services/web-apps/atlassian/confluence.nix index 84c41b6e53c2..f896d92fd6fc 100644 --- a/nixos/modules/services/web-apps/atlassian/confluence.nix +++ b/nixos/modules/services/web-apps/atlassian/confluence.nix @@ -137,12 +137,12 @@ in }; config = mkIf cfg.enable { - users.extraUsers."${cfg.user}" = { + users.users."${cfg.user}" = { isSystemUser = true; group = cfg.group; }; - users.extraGroups."${cfg.group}" = {}; + users.groups."${cfg.group}" = {}; systemd.services.confluence = { description = "Atlassian Confluence"; diff --git a/nixos/modules/services/web-apps/atlassian/crowd.nix b/nixos/modules/services/web-apps/atlassian/crowd.nix index 778e4afa1e0b..b6cb9f3b7c41 100644 --- a/nixos/modules/services/web-apps/atlassian/crowd.nix +++ b/nixos/modules/services/web-apps/atlassian/crowd.nix @@ -103,12 +103,12 @@ in }; config = mkIf cfg.enable { - users.extraUsers."${cfg.user}" = { + users.users."${cfg.user}" = { isSystemUser = true; group = cfg.group; }; - users.extraGroups."${cfg.group}" = {}; + users.groups."${cfg.group}" = {}; systemd.services.atlassian-crowd = { description = "Atlassian Crowd"; diff --git a/nixos/modules/services/web-apps/atlassian/jira.nix b/nixos/modules/services/web-apps/atlassian/jira.nix index 13c5951524d9..f5ec0a5f31b8 100644 --- a/nixos/modules/services/web-apps/atlassian/jira.nix +++ b/nixos/modules/services/web-apps/atlassian/jira.nix @@ -141,12 +141,12 @@ in }; config = mkIf cfg.enable { - users.extraUsers."${cfg.user}" = { + users.users."${cfg.user}" = { isSystemUser = true; group = cfg.group; }; - users.extraGroups."${cfg.group}" = {}; + users.groups."${cfg.group}" = {}; systemd.services.atlassian-jira = { description = "Atlassian JIRA"; diff --git a/nixos/modules/services/web-apps/frab.nix b/nixos/modules/services/web-apps/frab.nix index d5329ef03c89..d411727a1a54 100644 --- a/nixos/modules/services/web-apps/frab.nix +++ b/nixos/modules/services/web-apps/frab.nix @@ -174,14 +174,14 @@ in config = mkIf cfg.enable { environment.systemPackages = [ frab-rake ]; - users.extraUsers = [ + users.users = [ { name = cfg.user; group = cfg.group; home = "${cfg.statePath}"; } ]; - users.extraGroups = [ { name = cfg.group; } ]; + users.groups = [ { name = cfg.group; } ]; systemd.services.frab = { after = [ "network.target" "gitlab.service" ]; diff --git a/nixos/modules/services/web-apps/matomo.nix b/nixos/modules/services/web-apps/matomo.nix index ef6ac9698e21..ed38eb9ce1e9 100644 --- a/nixos/modules/services/web-apps/matomo.nix +++ b/nixos/modules/services/web-apps/matomo.nix @@ -109,13 +109,13 @@ in { message = "Either services.matomo.nginx or services.matomo.nginx.webServerUser is mandatory"; }]; - users.extraUsers.${user} = { + users.users.${user} = { isSystemUser = true; createHome = true; home = dataDir; group = user; }; - users.extraGroups.${user} = {}; + users.groups.${user} = {}; systemd.services.matomo_setup_update = { # everything needs to set up and up to date before matomo php files are executed diff --git a/nixos/modules/services/web-apps/mattermost.nix b/nixos/modules/services/web-apps/mattermost.nix index 96792c47cd24..8c7fc4056adc 100644 --- a/nixos/modules/services/web-apps/mattermost.nix +++ b/nixos/modules/services/web-apps/mattermost.nix @@ -146,14 +146,14 @@ in config = mkMerge [ (mkIf cfg.enable { - users.extraUsers = optionalAttrs (cfg.user == "mattermost") (singleton { + users.users = optionalAttrs (cfg.user == "mattermost") (singleton { name = "mattermost"; group = cfg.group; uid = config.ids.uids.mattermost; home = cfg.statePath; }); - users.extraGroups = optionalAttrs (cfg.group == "mattermost") (singleton { + users.groups = optionalAttrs (cfg.group == "mattermost") (singleton { name = "mattermost"; gid = config.ids.gids.mattermost; }); diff --git a/nixos/modules/services/web-apps/nexus.nix b/nixos/modules/services/web-apps/nexus.nix index b0eaee6040e3..30876889cf25 100644 --- a/nixos/modules/services/web-apps/nexus.nix +++ b/nixos/modules/services/web-apps/nexus.nix @@ -80,12 +80,12 @@ in }; config = mkIf cfg.enable { - users.extraUsers."${cfg.user}" = { + users.users."${cfg.user}" = { isSystemUser = true; group = cfg.group; }; - users.extraGroups."${cfg.group}" = {}; + users.groups."${cfg.group}" = {}; systemd.services.nexus = { description = "Sonatype Nexus3"; diff --git a/nixos/modules/services/web-apps/restya-board.nix b/nixos/modules/services/web-apps/restya-board.nix index cee725e8fe5f..bc6689bdb271 100644 --- a/nixos/modules/services/web-apps/restya-board.nix +++ b/nixos/modules/services/web-apps/restya-board.nix @@ -358,13 +358,13 @@ in ''; }; - users.extraUsers.restya-board = { + users.users.restya-board = { isSystemUser = true; createHome = false; home = runDir; group = "restya-board"; }; - users.extraGroups.restya-board = {}; + users.groups.restya-board = {}; services.postgresql.enable = mkIf (isNull cfg.database.host) true; diff --git a/nixos/modules/services/web-apps/tt-rss.nix b/nixos/modules/services/web-apps/tt-rss.nix index 1646ee5964fb..2b171aa1b2b2 100644 --- a/nixos/modules/services/web-apps/tt-rss.nix +++ b/nixos/modules/services/web-apps/tt-rss.nix @@ -624,8 +624,8 @@ let }; users = optionalAttrs (cfg.user == "tt_rss") { - extraUsers.tt_rss.group = "tt_rss"; - extraGroups.tt_rss = {}; + users.tt_rss.group = "tt_rss"; + groups.tt_rss = {}; }; }; } diff --git a/nixos/modules/services/web-apps/virtlyst.nix b/nixos/modules/services/web-apps/virtlyst.nix index 2fc67435ce82..e5c0bff2168a 100644 --- a/nixos/modules/services/web-apps/virtlyst.nix +++ b/nixos/modules/services/web-apps/virtlyst.nix @@ -50,7 +50,7 @@ in }; config = mkIf cfg.enable { - users.extraUsers.virtlyst = { + users.users.virtlyst = { home = stateDir; createHome = true; group = mkIf config.virtualisation.libvirtd.enable "libvirtd"; diff --git a/nixos/modules/services/web-servers/apache-httpd/default.nix b/nixos/modules/services/web-servers/apache-httpd/default.nix index f9f2511f45dc..b71ff0531cc8 100644 --- a/nixos/modules/services/web-servers/apache-httpd/default.nix +++ b/nixos/modules/services/web-servers/apache-httpd/default.nix @@ -658,14 +658,14 @@ in warnings = map (cfg: ''apache-httpd's port option is deprecated. Use listen = [{/*ip = "*"; */ port = ${toString cfg.port}";}]; instead'' ) (lib.filter (cfg: cfg.port != 0) allHosts); - users.extraUsers = optionalAttrs (mainCfg.user == "wwwrun") (singleton + users.users = optionalAttrs (mainCfg.user == "wwwrun") (singleton { name = "wwwrun"; group = mainCfg.group; description = "Apache httpd user"; uid = config.ids.uids.wwwrun; }); - users.extraGroups = optionalAttrs (mainCfg.group == "wwwrun") (singleton + users.groups = optionalAttrs (mainCfg.group == "wwwrun") (singleton { name = "wwwrun"; gid = config.ids.gids.wwwrun; }); diff --git a/nixos/modules/services/web-servers/caddy.nix b/nixos/modules/services/web-servers/caddy.nix index fe65fba42a46..4237cfdd9198 100644 --- a/nixos/modules/services/web-servers/caddy.nix +++ b/nixos/modules/services/web-servers/caddy.nix @@ -93,13 +93,13 @@ in { }; }; - users.extraUsers.caddy = { + users.users.caddy = { group = "caddy"; uid = config.ids.uids.caddy; home = cfg.dataDir; createHome = true; }; - users.extraGroups.caddy.gid = config.ids.uids.caddy; + users.groups.caddy.gid = config.ids.uids.caddy; }; } diff --git a/nixos/modules/services/web-servers/hitch/default.nix b/nixos/modules/services/web-servers/hitch/default.nix index 895d02827f71..a6c4cbea1225 100644 --- a/nixos/modules/services/web-servers/hitch/default.nix +++ b/nixos/modules/services/web-servers/hitch/default.nix @@ -102,7 +102,7 @@ with lib; environment.systemPackages = [ pkgs.hitch ]; - users.extraUsers.hitch.group = "hitch"; - users.extraGroups.hitch = {}; + users.users.hitch.group = "hitch"; + users.groups.hitch = {}; }; } diff --git a/nixos/modules/services/web-servers/lighttpd/default.nix b/nixos/modules/services/web-servers/lighttpd/default.nix index d23e810dcc62..7a3df26e47a6 100644 --- a/nixos/modules/services/web-servers/lighttpd/default.nix +++ b/nixos/modules/services/web-servers/lighttpd/default.nix @@ -245,12 +245,12 @@ in serviceConfig.KillSignal = "SIGINT"; }; - users.extraUsers.lighttpd = { + users.users.lighttpd = { group = "lighttpd"; description = "lighttpd web server privilege separation user"; uid = config.ids.uids.lighttpd; }; - users.extraGroups.lighttpd.gid = config.ids.gids.lighttpd; + users.groups.lighttpd.gid = config.ids.gids.lighttpd; }; } diff --git a/nixos/modules/services/web-servers/lighttpd/inginious.nix b/nixos/modules/services/web-servers/lighttpd/inginious.nix index 8c813d116a52..5ff1796e92a1 100644 --- a/nixos/modules/services/web-servers/lighttpd/inginious.nix +++ b/nixos/modules/services/web-servers/lighttpd/inginious.nix @@ -194,7 +194,7 @@ in storageDriver = mkDefault "overlay"; }; - users.extraUsers."lighttpd".extraGroups = [ "docker" ]; + users.users."lighttpd".extraGroups = [ "docker" ]; # Ensure that docker has pulled the required images. systemd.services.inginious-prefetch = { diff --git a/nixos/modules/services/web-servers/meguca.nix b/nixos/modules/services/web-servers/meguca.nix index 8ae86c67a29f..ed7325ff0790 100644 --- a/nixos/modules/services/web-servers/meguca.nix +++ b/nixos/modules/services/web-servers/meguca.nix @@ -104,15 +104,16 @@ in preStart = '' # Ensure folder exists and links are correct or create them mkdir -p ${cfg.baseDir} + chmod 750 ${cfg.baseDir} ln -sf ${pkgs.meguca}/share/meguca/www ${cfg.baseDir} # Ensure the database is correct or create it ${pkgs.sudo}/bin/sudo -u ${postgres.superUser} ${postgres.package}/bin/createuser \ -SDR meguca || true - ${pkgs.sudo}/bin/sudo -u ${postgres.superUser} ${postgres.package}/bin/psql \ - -c "ALTER ROLE meguca WITH PASSWORD '$(cat ${cfg.passwordFile})';" || true ${pkgs.sudo}/bin/sudo -u ${postgres.superUser} ${postgres.package}/bin/createdb \ -T template0 -E UTF8 -O meguca meguca || true + ${pkgs.sudo}/bin/sudo -u meguca ${postgres.package}/bin/psql \ + -c "ALTER ROLE meguca WITH PASSWORD '$(cat ${cfg.passwordFile})';" || true ''; script = '' @@ -139,7 +140,7 @@ in }; users = { - extraUsers.meguca = { + users.meguca = { description = "meguca server service user"; home = cfg.baseDir; createHome = true; @@ -147,7 +148,7 @@ in uid = config.ids.uids.meguca; }; - extraGroups.meguca = { + groups.meguca = { gid = config.ids.gids.meguca; members = [ "meguca" ]; }; diff --git a/nixos/modules/services/web-servers/mighttpd2.nix b/nixos/modules/services/web-servers/mighttpd2.nix index a888f623616e..4e7082c67690 100644 --- a/nixos/modules/services/web-servers/mighttpd2.nix +++ b/nixos/modules/services/web-servers/mighttpd2.nix @@ -119,13 +119,13 @@ in { }; }; - users.extraUsers.mighttpd2 = { + users.users.mighttpd2 = { group = "mighttpd2"; uid = config.ids.uids.mighttpd2; isSystemUser = true; }; - users.extraGroups.mighttpd2.gid = config.ids.gids.mighttpd2; + users.groups.mighttpd2.gid = config.ids.gids.mighttpd2; }; meta.maintainers = with lib.maintainers; [ fgaz ]; diff --git a/nixos/modules/services/web-servers/minio.nix b/nixos/modules/services/web-servers/minio.nix index 7ead33483ea4..f78a966989b6 100644 --- a/nixos/modules/services/web-servers/minio.nix +++ b/nixos/modules/services/web-servers/minio.nix @@ -101,11 +101,11 @@ in }; }; - users.extraUsers.minio = { + users.users.minio = { group = "minio"; uid = config.ids.uids.minio; }; - users.extraGroups.minio.gid = config.ids.uids.minio; + users.groups.minio.gid = config.ids.uids.minio; }; } diff --git a/nixos/modules/services/web-servers/nginx/default.nix b/nixos/modules/services/web-servers/nginx/default.nix index 0aa780bf6da1..355976c4b7cb 100644 --- a/nixos/modules/services/web-servers/nginx/default.nix +++ b/nixos/modules/services/web-servers/nginx/default.nix @@ -613,13 +613,13 @@ in listToAttrs acmePairs ); - users.extraUsers = optionalAttrs (cfg.user == "nginx") (singleton + users.users = optionalAttrs (cfg.user == "nginx") (singleton { name = "nginx"; group = cfg.group; uid = config.ids.uids.nginx; }); - users.extraGroups = optionalAttrs (cfg.group == "nginx") (singleton + users.groups = optionalAttrs (cfg.group == "nginx") (singleton { name = "nginx"; gid = config.ids.gids.nginx; }); diff --git a/nixos/modules/services/web-servers/tomcat.nix b/nixos/modules/services/web-servers/tomcat.nix index bc713a08f18f..d8ccb7ca65d6 100644 --- a/nixos/modules/services/web-servers/tomcat.nix +++ b/nixos/modules/services/web-servers/tomcat.nix @@ -166,12 +166,12 @@ in config = mkIf config.services.tomcat.enable { - users.extraGroups = singleton + users.groups = singleton { name = "tomcat"; gid = config.ids.gids.tomcat; }; - users.extraUsers = singleton + users.users = singleton { name = "tomcat"; uid = config.ids.uids.tomcat; description = "Tomcat user"; diff --git a/nixos/modules/services/web-servers/traefik.nix b/nixos/modules/services/web-servers/traefik.nix index b6c7fef21fb2..700202b1d28f 100644 --- a/nixos/modules/services/web-servers/traefik.nix +++ b/nixos/modules/services/web-servers/traefik.nix @@ -114,12 +114,12 @@ in { }; }; - users.extraUsers.traefik = { + users.users.traefik = { group = "traefik"; home = cfg.dataDir; createHome = true; }; - users.extraGroups.traefik = {}; + users.groups.traefik = {}; }; } diff --git a/nixos/modules/services/web-servers/uwsgi.nix b/nixos/modules/services/web-servers/uwsgi.nix index 356b896a6dc9..3ef78ea77cb2 100644 --- a/nixos/modules/services/web-servers/uwsgi.nix +++ b/nixos/modules/services/web-servers/uwsgi.nix @@ -150,13 +150,13 @@ in { }; }; - users.extraUsers = optionalAttrs (cfg.user == "uwsgi") (singleton + users.users = optionalAttrs (cfg.user == "uwsgi") (singleton { name = "uwsgi"; group = cfg.group; uid = config.ids.uids.uwsgi; }); - users.extraGroups = optionalAttrs (cfg.group == "uwsgi") (singleton + users.groups = optionalAttrs (cfg.group == "uwsgi") (singleton { name = "uwsgi"; gid = config.ids.gids.uwsgi; }); diff --git a/nixos/modules/services/web-servers/varnish/default.nix b/nixos/modules/services/web-servers/varnish/default.nix index bc74d62b116a..63f967185c2d 100644 --- a/nixos/modules/services/web-servers/varnish/default.nix +++ b/nixos/modules/services/web-servers/varnish/default.nix @@ -103,11 +103,11 @@ in }) ]; - users.extraUsers.varnish = { + users.users.varnish = { group = "varnish"; uid = config.ids.uids.varnish; }; - users.extraGroups.varnish.gid = config.ids.uids.varnish; + users.groups.varnish.gid = config.ids.uids.varnish; }; } diff --git a/nixos/modules/services/web-servers/zope2.nix b/nixos/modules/services/web-servers/zope2.nix index 496e34db4a96..1dcc3ac9d8d4 100644 --- a/nixos/modules/services/web-servers/zope2.nix +++ b/nixos/modules/services/web-servers/zope2.nix @@ -103,7 +103,7 @@ in config = mkIf (cfg.instances != {}) { - users.extraUsers.zope2.uid = config.ids.uids.zope2; + users.users.zope2.uid = config.ids.uids.zope2; systemd.services = let diff --git a/nixos/modules/services/x11/display-managers/gdm.nix b/nixos/modules/services/x11/display-managers/gdm.nix index a6a38a21b617..8b08c01ea0db 100644 --- a/nixos/modules/services/x11/display-managers/gdm.nix +++ b/nixos/modules/services/x11/display-managers/gdm.nix @@ -89,7 +89,7 @@ in services.xserver.displayManager.slim.enable = false; - users.extraUsers.gdm = + users.users.gdm = { name = "gdm"; uid = config.ids.uids.gdm; group = "gdm"; @@ -97,7 +97,7 @@ in description = "GDM user"; }; - users.extraGroups.gdm.gid = config.ids.gids.gdm; + users.groups.gdm.gid = config.ids.gids.gdm; # GDM needs different xserverArgs, presumable because using wayland by default. services.xserver.tty = null; diff --git a/nixos/modules/services/x11/display-managers/lightdm.nix b/nixos/modules/services/x11/display-managers/lightdm.nix index 5beadacdfa93..206ede227efa 100644 --- a/nixos/modules/services/x11/display-managers/lightdm.nix +++ b/nixos/modules/services/x11/display-managers/lightdm.nix @@ -42,7 +42,7 @@ let '' [LightDM] ${optionalString cfg.greeter.enable '' - greeter-user = ${config.users.extraUsers.lightdm.name} + greeter-user = ${config.users.users.lightdm.name} greeters-directory = ${cfg.greeter.package} ''} sessions-directory = ${dmcfg.session.desktops} @@ -252,14 +252,14 @@ in session include lightdm ''; - users.extraUsers.lightdm = { + users.users.lightdm = { createHome = true; home = "/var/lib/lightdm-data"; group = "lightdm"; uid = config.ids.uids.lightdm; }; - users.extraGroups.lightdm.gid = config.ids.gids.lightdm; + users.groups.lightdm.gid = config.ids.gids.lightdm; services.xserver.tty = null; # We might start multiple X servers so let the tty increment themselves.. services.xserver.display = null; # We specify our own display (and logfile) in xserver-wrapper up there }; diff --git a/nixos/modules/services/x11/display-managers/sddm.nix b/nixos/modules/services/x11/display-managers/sddm.nix index df782e82ed15..8db7414e811f 100644 --- a/nixos/modules/services/x11/display-managers/sddm.nix +++ b/nixos/modules/services/x11/display-managers/sddm.nix @@ -268,7 +268,7 @@ in ''; }; - users.extraUsers.sddm = { + users.users.sddm = { createHome = true; home = "/var/lib/sddm"; group = "sddm"; @@ -277,7 +277,7 @@ in environment.etc."sddm.conf".source = cfgFile; - users.extraGroups.sddm.gid = config.ids.gids.sddm; + users.groups.sddm.gid = config.ids.gids.sddm; environment.systemPackages = [ sddm ]; services.dbus.packages = [ sddm ]; diff --git a/nixos/modules/services/x11/hardware/libinput.nix b/nixos/modules/services/x11/hardware/libinput.nix index d0a87f183b6f..072004d5dd91 100644 --- a/nixos/modules/services/x11/hardware/libinput.nix +++ b/nixos/modules/services/x11/hardware/libinput.nix @@ -116,7 +116,7 @@ in { }; scrollMethod = mkOption { - type = types.enum [ "twofinger" "edge" "none" ]; + type = types.enum [ "twofinger" "edge" "button" "none" ]; default = "twofinger"; example = "edge"; description = diff --git a/nixos/modules/system/boot/initrd-ssh.nix b/nixos/modules/system/boot/initrd-ssh.nix index 8b3dc2d90eb3..53e993603e27 100644 --- a/nixos/modules/system/boot/initrd-ssh.nix +++ b/nixos/modules/system/boot/initrd-ssh.nix @@ -79,7 +79,7 @@ in boot.initrd.network.ssh.authorizedKeys = mkOption { type = types.listOf types.str; - default = config.users.extraUsers.root.openssh.authorizedKeys.keys; + default = config.users.users.root.openssh.authorizedKeys.keys; description = '' Authorized keys for the root user on initrd. ''; diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index d2fe33488a7a..6593b1a02430 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -798,13 +798,13 @@ in mkdir -m 0700 -p /var/log/journal ''; - users.extraUsers.systemd-network.uid = config.ids.uids.systemd-network; - users.extraGroups.systemd-network.gid = config.ids.gids.systemd-network; - users.extraUsers.systemd-resolve.uid = config.ids.uids.systemd-resolve; - users.extraGroups.systemd-resolve.gid = config.ids.gids.systemd-resolve; + users.users.systemd-network.uid = config.ids.uids.systemd-network; + users.groups.systemd-network.gid = config.ids.gids.systemd-network; + users.users.systemd-resolve.uid = config.ids.uids.systemd-resolve; + users.groups.systemd-resolve.gid = config.ids.gids.systemd-resolve; # Target for ‘charon send-keys’ to hook into. - users.extraGroups.keys.gid = config.ids.gids.keys; + users.groups.keys.gid = config.ids.gids.keys; systemd.targets.keys = { description = "Security Keys"; @@ -840,9 +840,9 @@ in "TMPFS_XATTR" "SECCOMP" ]; - users.extraGroups.systemd-journal.gid = config.ids.gids.systemd-journal; - users.extraUsers.systemd-journal-gateway.uid = config.ids.uids.systemd-journal-gateway; - users.extraGroups.systemd-journal-gateway.gid = config.ids.gids.systemd-journal-gateway; + users.groups.systemd-journal.gid = config.ids.gids.systemd-journal; + users.users.systemd-journal-gateway.uid = config.ids.uids.systemd-journal-gateway; + users.groups.systemd-journal-gateway.gid = config.ids.gids.systemd-journal-gateway; # Generate timer units for all services that have a ‘startAt’ value. systemd.timers = diff --git a/nixos/modules/system/boot/timesyncd.nix b/nixos/modules/system/boot/timesyncd.nix index 57853c5698d0..18aad58b36cc 100644 --- a/nixos/modules/system/boot/timesyncd.nix +++ b/nixos/modules/system/boot/timesyncd.nix @@ -37,8 +37,8 @@ with lib; NTP=${concatStringsSep " " config.services.timesyncd.servers} ''; - users.extraUsers.systemd-timesync.uid = config.ids.uids.systemd-timesync; - users.extraGroups.systemd-timesync.gid = config.ids.gids.systemd-timesync; + users.users.systemd-timesync.uid = config.ids.uids.systemd-timesync; + users.groups.systemd-timesync.gid = config.ids.gids.systemd-timesync; }; diff --git a/nixos/modules/tasks/filesystems/zfs.nix b/nixos/modules/tasks/filesystems/zfs.nix index bfcd81d62159..39f51c363673 100644 --- a/nixos/modules/tasks/filesystems/zfs.nix +++ b/nixos/modules/tasks/filesystems/zfs.nix @@ -58,6 +58,45 @@ let snapshotNames = [ "frequent" "hourly" "daily" "weekly" "monthly" ]; + # When importing ZFS pools, there's one difficulty: These scripts may run + # before the backing devices (physical HDDs, etc.) of the pool have been + # scanned and initialized. + # + # An attempted import with all devices missing will just fail, and can be + # retried, but an import where e.g. two out of three disks in a three-way + # mirror are missing, will succeed. This is a problem: When the missing disks + # are later discovered, they won't be automatically set online, rendering the + # pool redundancy-less (and far slower) until such time as the system reboots. + # + # The solution is the below. poolReady checks the status of an un-imported + # pool, to see if *every* device is available -- in which case the pool will be + # in state ONLINE, as opposed to DEGRADED, FAULTED or MISSING. + # + # The import scripts then loop over this, waiting until the pool is ready or a + # sufficient amount of time has passed that we can assume it won't be. In the + # latter case it makes one last attempt at importing, allowing the system to + # (eventually) boot even with a degraded pool. + importLib = {zpoolCmd, awkCmd, cfgZfs}: '' + poolReady() { + pool="$1" + state="$("${zpoolCmd}" import | "${awkCmd}" "/pool: $pool/ { found = 1 }; /state:/ { if (found == 1) { print \$2; exit } }; END { if (found == 0) { print \"MISSING\" } }")" + if [[ "$state" = "ONLINE" ]]; then + return 0 + else + echo "Pool $pool in state $state, waiting" + return 1 + fi + } + poolImported() { + pool="$1" + "${zpoolCmd}" list "$pool" >/dev/null 2>/dev/null + } + poolImport() { + pool="$1" + "${zpoolCmd}" import -d "${cfgZfs.devNodes}" -N $ZFS_FORCE "$pool" + } + ''; + in { @@ -339,19 +378,26 @@ in ;; esac done - ''] ++ (map (pool: '' + ''] ++ [(importLib { + # See comments at importLib definition. + zpoolCmd = "zpool"; + awkCmd = "awk"; + inherit cfgZfs; + })] ++ (map (pool: '' echo -n "importing root ZFS pool \"${pool}\"..." - trial=0 - until msg="$(zpool import -d ${cfgZfs.devNodes} -N $ZFS_FORCE '${pool}' 2>&1)"; do - sleep 0.25 - echo -n . - trial=$(($trial + 1)) - if [[ $trial -eq 60 ]]; then - break + # Loop across the import until it succeeds, because the devices needed may not be discovered yet. + if ! poolImported "${pool}"; then + for trial in `seq 1 60`; do + poolReady "${pool}" > /dev/null && msg="$(poolImport "${pool}" 2>&1)" && break + sleep 1 + echo -n . + done + echo + if [[ -n "$msg" ]]; then + echo "$msg"; fi - done - echo - if [[ -n "$msg" ]]; then echo "$msg"; fi + poolImported "${pool}" || poolImport "${pool}" # Try one last time, e.g. to import a degraded pool. + fi ${lib.optionalString cfgZfs.requestEncryptionCredentials '' zfs load-key -a ''} @@ -395,10 +441,26 @@ in Type = "oneshot"; RemainAfterExit = true; }; - script = '' - zpool_cmd="${packages.zfsUser}/sbin/zpool" - ("$zpool_cmd" list "${pool}" >/dev/null) || "$zpool_cmd" import -d ${cfgZfs.devNodes} -N ${optionalString cfgZfs.forceImportAll "-f"} "${pool}" - ${optionalString cfgZfs.requestEncryptionCredentials "\"${packages.zfsUser}/sbin/zfs\" load-key -r \"${pool}\""} + script = (importLib { + # See comments at importLib definition. + zpoolCmd="${packages.zfsUser}/sbin/zpool"; + awkCmd="${pkgs.gawk}/bin/awk"; + inherit cfgZfs; + }) + '' + poolImported "${pool}" && exit + echo -n "importing ZFS pool \"${pool}\"..." + # Loop across the import until it succeeds, because the devices needed may not be discovered yet. + for trial in `seq 1 60`; do + poolReady "${pool}" && poolImport "${pool}" && break + sleep 1 + done + poolImported "${pool}" || poolImport "${pool}" # Try one last time, e.g. to import a degraded pool. + if poolImported "${pool}"; then + ${optionalString cfgZfs.requestEncryptionCredentials "\"${packages.zfsUser}/sbin/zfs\" load-key -r \"${pool}\""} + echo "Successfully imported ${pool}" + else + exit 1 + fi ''; }; diff --git a/nixos/modules/tasks/network-interfaces.nix b/nixos/modules/tasks/network-interfaces.nix index a3534e10bb17..7053aa57f803 100644 --- a/nixos/modules/tasks/network-interfaces.nix +++ b/nixos/modules/tasks/network-interfaces.nix @@ -1053,7 +1053,7 @@ in }; } // (listToAttrs (flip map interfaces (i: let - deviceDependency = if config.boot.isContainer + deviceDependency = if (config.boot.isContainer || i.name == "lo") then [] else [ (subsystemDevice i.name) ]; in diff --git a/nixos/modules/testing/test-instrumentation.nix b/nixos/modules/testing/test-instrumentation.nix index 3d46ba72493c..7a7fcbecd64f 100644 --- a/nixos/modules/testing/test-instrumentation.nix +++ b/nixos/modules/testing/test-instrumentation.nix @@ -126,7 +126,7 @@ in networking.usePredictableInterfaceNames = false; # Make it easy to log in as root when running the test interactively. - users.extraUsers.root.initialHashedPassword = mkOverride 150 ""; + users.users.root.initialHashedPassword = mkOverride 150 ""; services.xserver.displayManager.job.logToJournal = true; diff --git a/nixos/modules/virtualisation/docker.nix b/nixos/modules/virtualisation/docker.nix index a9a2095499a7..a1a32c1c59a1 100644 --- a/nixos/modules/virtualisation/docker.nix +++ b/nixos/modules/virtualisation/docker.nix @@ -141,7 +141,7 @@ in config = mkIf cfg.enable (mkMerge [{ environment.systemPackages = [ cfg.package ]; - users.extraGroups.docker.gid = config.ids.gids.docker; + users.groups.docker.gid = config.ids.gids.docker; systemd.packages = [ cfg.package ]; systemd.services.docker = { diff --git a/nixos/modules/virtualisation/libvirtd.nix b/nixos/modules/virtualisation/libvirtd.nix index 024db7f87c2e..87409db4320c 100644 --- a/nixos/modules/virtualisation/libvirtd.nix +++ b/nixos/modules/virtualisation/libvirtd.nix @@ -108,7 +108,7 @@ in { boot.kernelModules = [ "tun" ]; - users.extraGroups.libvirtd.gid = config.ids.gids.libvirtd; + users.groups.libvirtd.gid = config.ids.gids.libvirtd; systemd.packages = [ pkgs.libvirt ]; diff --git a/nixos/modules/virtualisation/lxc-container.nix b/nixos/modules/virtualisation/lxc-container.nix index 0208787e7795..dbb7b881955a 100644 --- a/nixos/modules/virtualisation/lxc-container.nix +++ b/nixos/modules/virtualisation/lxc-container.nix @@ -8,7 +8,7 @@ with lib; ]; # Allow the user to login as root without password. - users.extraUsers.root.initialHashedPassword = mkOverride 150 ""; + users.users.root.initialHashedPassword = mkOverride 150 ""; # Some more help text. services.mingetty.helpLine = diff --git a/nixos/modules/virtualisation/lxd.nix b/nixos/modules/virtualisation/lxd.nix index 3e76cdacfc4b..505c11abd208 100644 --- a/nixos/modules/virtualisation/lxd.nix +++ b/nixos/modules/virtualisation/lxd.nix @@ -73,9 +73,9 @@ in }; - users.extraGroups.lxd.gid = config.ids.gids.lxd; + users.groups.lxd.gid = config.ids.gids.lxd; - users.extraUsers.root = { + users.users.root = { subUidRanges = [ { startUid = 1000000; count = 65536; } ]; subGidRanges = [ { startGid = 1000000; count = 65536; } ]; }; diff --git a/nixos/modules/virtualisation/rkt.nix b/nixos/modules/virtualisation/rkt.nix index 98be4f680c3a..fd662b52df52 100644 --- a/nixos/modules/virtualisation/rkt.nix +++ b/nixos/modules/virtualisation/rkt.nix @@ -59,6 +59,6 @@ in }; }; - users.extraGroups.rkt = {}; + users.groups.rkt = {}; }; } diff --git a/nixos/modules/virtualisation/virtualbox-guest.nix b/nixos/modules/virtualisation/virtualbox-guest.nix index 5da4b7e3bafd..78c6f740788e 100644 --- a/nixos/modules/virtualisation/virtualbox-guest.nix +++ b/nixos/modules/virtualisation/virtualbox-guest.nix @@ -44,7 +44,7 @@ in boot.supportedFilesystems = [ "vboxsf" ]; boot.initrd.supportedFilesystems = [ "vboxsf" ]; - users.extraGroups.vboxsf.gid = config.ids.gids.vboxsf; + users.groups.vboxsf.gid = config.ids.gids.vboxsf; systemd.services.virtualbox = { description = "VirtualBox Guest Services"; diff --git a/nixos/modules/virtualisation/virtualbox-host.nix b/nixos/modules/virtualisation/virtualbox-host.nix index 885d752577d5..8adf3aa919d8 100644 --- a/nixos/modules/virtualisation/virtualbox-host.nix +++ b/nixos/modules/virtualisation/virtualbox-host.nix @@ -86,7 +86,7 @@ in "VirtualBox" ])); - users.extraGroups.vboxusers.gid = config.ids.gids.vboxusers; + users.groups.vboxusers.gid = config.ids.gids.vboxusers; services.udev.extraRules = '' diff --git a/nixos/release.nix b/nixos/release.nix index 67820149437d..f11f372335a0 100644 --- a/nixos/release.nix +++ b/nixos/release.nix @@ -341,6 +341,7 @@ in rec { tests.mesos = callTest tests/mesos.nix {}; tests.misc = callTest tests/misc.nix {}; tests.mongodb = callTest tests/mongodb.nix {}; + tests.mpd = callTest tests/mpd.nix {}; tests.mumble = callTest tests/mumble.nix {}; tests.munin = callTest tests/munin.nix {}; tests.mutableUsers = callTest tests/mutable-users.nix {}; diff --git a/nixos/tests/atd.nix b/nixos/tests/atd.nix index 5260c8ddfb82..ef848c2a374f 100644 --- a/nixos/tests/atd.nix +++ b/nixos/tests/atd.nix @@ -9,7 +9,7 @@ import ./make-test.nix ({ pkgs, lib, ... }: machine = { config, pkgs, ... }: { services.atd.enable = true; - users.extraUsers.alice = { isNormalUser = true; }; + users.users.alice = { isNormalUser = true; }; }; # "at" has a resolution of 1 minute diff --git a/nixos/tests/common/user-account.nix b/nixos/tests/common/user-account.nix index 93aeb60e456a..dc50e14750b0 100644 --- a/nixos/tests/common/user-account.nix +++ b/nixos/tests/common/user-account.nix @@ -1,12 +1,12 @@ { lib, ... }: -{ users.extraUsers.alice = +{ users.users.alice = { isNormalUser = true; description = "Alice Foobar"; password = "foobar"; }; - users.extraUsers.bob = + users.users.bob = { isNormalUser = true; description = "Bob Foobar"; password = "foobar"; diff --git a/nixos/tests/containers-imperative.nix b/nixos/tests/containers-imperative.nix index b89e08f82acb..42bff6a9a3f9 100644 --- a/nixos/tests/containers-imperative.nix +++ b/nixos/tests/containers-imperative.nix @@ -10,7 +10,7 @@ import ./make-test.nix ({ pkgs, ...} : { { config, pkgs, lib, ... }: { imports = [ ../modules/installer/cd-dvd/channel.nix ]; virtualisation.writableStore = true; - virtualisation.memorySize = 768; + virtualisation.memorySize = 1024; # Make sure we always have all the required dependencies for creating a # container available within the VM, because we don't have network access. virtualisation.pathsInNixDB = let diff --git a/nixos/tests/gitolite.nix b/nixos/tests/gitolite.nix index 4b4e081acc5f..d4028efad1d8 100644 --- a/nixos/tests/gitolite.nix +++ b/nixos/tests/gitolite.nix @@ -78,8 +78,8 @@ in # there's nobody around that can input password PreferredAuthentications publickey ''; - users.extraUsers.alice = { isNormalUser = true; }; - users.extraUsers.bob = { isNormalUser = true; }; + users.users.alice = { isNormalUser = true; }; + users.users.bob = { isNormalUser = true; }; }; }; diff --git a/nixos/tests/installer.nix b/nixos/tests/installer.nix index 92f400937b97..8ce9bc21ff77 100644 --- a/nixos/tests/installer.nix +++ b/nixos/tests/installer.nix @@ -43,7 +43,7 @@ let boot.loader.systemd-boot.enable = true; ''} - users.extraUsers.alice = { + users.users.alice = { isNormalUser = true; home = "/home/alice"; description = "Alice Foobar"; diff --git a/nixos/tests/jenkins.nix b/nixos/tests/jenkins.nix index ed55b2ff5871..25629efbfa49 100644 --- a/nixos/tests/jenkins.nix +++ b/nixos/tests/jenkins.nix @@ -18,7 +18,7 @@ import ./make-test.nix ({ pkgs, ...} : { # should have no effect services.jenkinsSlave.enable = true; - users.extraUsers.jenkins.extraGroups = [ "users" ]; + users.users.jenkins.extraGroups = [ "users" ]; systemd.services.jenkins.serviceConfig.TimeoutStartSec = "6min"; }; @@ -27,7 +27,7 @@ import ./make-test.nix ({ pkgs, ...} : { { config, pkgs, ... }: { services.jenkinsSlave.enable = true; - users.extraUsers.jenkins.extraGroups = [ "users" ]; + users.users.jenkins.extraGroups = [ "users" ]; }; }; diff --git a/nixos/tests/lightdm.nix b/nixos/tests/lightdm.nix index 97ec79406b88..d2b561fa67b4 100644 --- a/nixos/tests/lightdm.nix +++ b/nixos/tests/lightdm.nix @@ -16,7 +16,7 @@ import ./make-test.nix ({ pkgs, ...} : { enableOCR = true; testScript = { nodes, ... }: let - user = nodes.machine.config.users.extraUsers.alice; + user = nodes.machine.config.users.users.alice; in '' startAll; $machine->waitForText(qr/${user.description}/); diff --git a/nixos/tests/mpd.nix b/nixos/tests/mpd.nix new file mode 100644 index 000000000000..2950a8d809d6 --- /dev/null +++ b/nixos/tests/mpd.nix @@ -0,0 +1,119 @@ +import ./make-test.nix ({ pkgs, ... }: + let + track = pkgs.fetchurl { + # Sourced from http://freemusicarchive.org/music/Blue_Wave_Theory/Surf_Music_Month_Challenge/Skyhawk_Beach_fade_in + # License: http://creativecommons.org/licenses/by-sa/4.0/ + + name = "Blue_Wave_Theory-Skyhawk_Beach.mp3"; + url = https://freemusicarchive.org/file/music/ccCommunity/Blue_Wave_Theory/Surf_Music_Month_Challenge/Blue_Wave_Theory_-_04_-_Skyhawk_Beach.mp3; + sha256 = "0xw417bxkx4gqqy139bb21yldi37xx8xjfxrwaqa0gyw19dl6mgp"; + }; + + defaultCfg = rec { + user = "mpd"; + group = "mpd"; + dataDir = "/var/lib/mpd"; + musicDirectory = "${dataDir}/music"; + }; + + defaultMpdCfg = with defaultCfg; { + inherit dataDir musicDirectory user group; + enable = true; + }; + + musicService = { user, group, musicDirectory }: { + description = "Sets up the music file(s) for MPD to use."; + requires = [ "mpd.service" ]; + after = [ "mpd.service" ]; + wantedBy = [ "default.target" ]; + script = '' + mkdir -p ${musicDirectory} && chown -R ${user}:${group} ${musicDirectory} + cp ${track} ${musicDirectory} + chown ${user}:${group} ${musicDirectory}/$(basename ${track}) + ''; + }; + + mkServer = { mpd, musicService, }: + { boot.kernelModules = [ "snd-dummy" ]; + sound.enable = true; + services.mpd = mpd; + systemd.services.musicService = musicService; + }; + in { + name = "mpd"; + meta = with pkgs.stdenv.lib.maintainers; { + maintainers = [ emmanuelrosa ]; + }; + + nodes = + { client = + { config, pkgs, ... }: { }; + + serverALSA = + { config, pkgs, ... }: (mkServer { + mpd = defaultMpdCfg // { + network.listenAddress = "any"; + extraConfig = '' + audio_output { + type "alsa" + name "ALSA" + mixer_type "null" + } + ''; + }; + + musicService = with defaultMpdCfg; musicService { inherit user group musicDirectory; }; + }) // { networking.firewall.allowedTCPPorts = [ 6600 ]; }; + + serverPulseAudio = + { config, pkgs, ... }: (mkServer { + mpd = defaultMpdCfg // { + extraConfig = '' + audio_output { + type "pulse" + name "The Pulse" + } + ''; + }; + + musicService = with defaultCfg; musicService { inherit user group musicDirectory; }; + }) // { hardware.pulseaudio.enable = true; }; + }; + + testScript = '' + my $mpc = "${pkgs.mpc_cli}/bin/mpc --wait"; + + # Connects to the given server and attempts to play a tune. + sub play_some_music { + my $server = $_[0]; + + $server->waitForUnit("mpd.service"); + $server->succeed("$mpc update"); + my @tracks = $server->execute("$mpc ls"); + + for my $track (split(/\n/, $tracks[1])) { + $server->succeed("$mpc add $track"); + }; + + my @added_tracks = $server->execute("$mpc listall"); + (length $added_tracks[1]) > 0 or die "Failed to add audio tracks to the playlist."; + + $server->succeed("$mpc play"); + + my @status = $server->execute("$mpc status"); + my @output = split(/\n/, $status[1]); + $output[1] =~ /.*playing.*/ or die "Audio track is not playing, as expected."; + + $server->succeed("$mpc stop"); + }; + + play_some_music($serverALSA); + play_some_music($serverPulseAudio); + + $client->succeed("$mpc -h serverALSA status"); + + # The PulseAudio-based server is configured not to accept external client connections + # to perform the following test: + $client->fail("$mpc -h serverPulseAudio status"); + ''; +}) diff --git a/nixos/tests/openssh.nix b/nixos/tests/openssh.nix index b2d254e9d9d9..230b45206847 100644 --- a/nixos/tests/openssh.nix +++ b/nixos/tests/openssh.nix @@ -17,7 +17,7 @@ in { services.openssh.enable = true; security.pam.services.sshd.limits = [ { domain = "*"; item = "memlock"; type = "-"; value = 1024; } ]; - users.extraUsers.root.openssh.authorizedKeys.keys = [ + users.users.root.openssh.authorizedKeys.keys = [ snakeOilPublicKey ]; }; @@ -29,7 +29,7 @@ in { services.openssh = { enable = true; startWhenNeeded = true; }; security.pam.services.sshd.limits = [ { domain = "*"; item = "memlock"; type = "-"; value = 1024; } ]; - users.extraUsers.root.openssh.authorizedKeys.keys = [ + users.users.root.openssh.authorizedKeys.keys = [ snakeOilPublicKey ]; }; diff --git a/nixos/tests/pam-oath-login.nix b/nixos/tests/pam-oath-login.nix index 4364d6e354a6..eb5966d92139 100644 --- a/nixos/tests/pam-oath-login.nix +++ b/nixos/tests/pam-oath-login.nix @@ -30,7 +30,7 @@ in enable = true; }; - users.extraUsers.alice = { + users.users.alice = { isNormalUser = true; name = "alice"; uid = 1000; diff --git a/nixos/tests/plasma5.nix b/nixos/tests/plasma5.nix index 14ab2e30cabf..e479d3f1cb8f 100644 --- a/nixos/tests/plasma5.nix +++ b/nixos/tests/plasma5.nix @@ -41,7 +41,7 @@ import ./make-test.nix ({ pkgs, ...} : enableOCR = true; testScript = { nodes, ... }: let - user = nodes.machine.config.users.extraUsers.alice; + user = nodes.machine.config.users.users.alice; xdo = "${pkgs.xdotool}/bin/xdotool"; in '' startAll; diff --git a/nixos/tests/sddm.nix b/nixos/tests/sddm.nix index 1ce2b8157842..ac91a89f6695 100644 --- a/nixos/tests/sddm.nix +++ b/nixos/tests/sddm.nix @@ -21,7 +21,7 @@ let enableOCR = true; testScript = { nodes, ... }: let - user = nodes.machine.config.users.extraUsers.alice; + user = nodes.machine.config.users.users.alice; in '' startAll; $machine->waitForText(qr/select your user/i); diff --git a/nixos/tests/slim.nix b/nixos/tests/slim.nix index 7b939d836381..5c76c58cf3f3 100644 --- a/nixos/tests/slim.nix +++ b/nixos/tests/slim.nix @@ -48,7 +48,7 @@ import ./make-test.nix ({ pkgs, ...} : { enableOCR = true; testScript = { nodes, ... }: let - user = nodes.machine.config.users.extraUsers.alice; + user = nodes.machine.config.users.users.alice; in '' startAll; $machine->waitForText(qr/Username:/); diff --git a/nixos/tests/sudo.nix b/nixos/tests/sudo.nix index 35addb0ee805..5d6c8691230a 100644 --- a/nixos/tests/sudo.nix +++ b/nixos/tests/sudo.nix @@ -14,7 +14,7 @@ in { config, lib, pkgs, ... }: with lib; { - users.extraGroups = { foobar = {}; barfoo = {}; baz = { gid = 1337; }; }; + users.groups = { foobar = {}; barfoo = {}; baz = { gid = 1337; }; }; users.users = { test0 = { isNormalUser = true; extraGroups = [ "wheel" ]; }; test1 = { isNormalUser = true; password = password; }; diff --git a/nixos/tests/virtualbox.nix b/nixos/tests/virtualbox.nix index 249571fcedec..008dab8459c8 100644 --- a/nixos/tests/virtualbox.nix +++ b/nixos/tests/virtualbox.nix @@ -334,7 +334,7 @@ let virtualisation.memorySize = 2048; virtualisation.virtualbox.host.enable = true; services.xserver.displayManager.auto.user = "alice"; - users.extraUsers.alice.extraGroups = let + users.users.alice.extraGroups = let inherit (config.virtualisation.virtualbox.host) enableHardening; in lib.mkIf enableHardening (lib.singleton "vboxusers"); }; diff --git a/pkgs/applications/altcoins/particl/particl-core.nix b/pkgs/applications/altcoins/particl/particl-core.nix index f47b04c1daea..5be2bec6c724 100644 --- a/pkgs/applications/altcoins/particl/particl-core.nix +++ b/pkgs/applications/altcoins/particl/particl-core.nix @@ -19,11 +19,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "particl-core-${version}"; - version = "0.16.0.5"; + version = "0.16.1.0"; src = fetchurl { url = "https://github.com/particl/particl-core/archive/v${version}.tar.gz"; - sha256 = "070crn6nnzrbcaj30w0qbybpm9kfd2ghnvmxp29gckgknw6n0vam"; + sha256 = "0rfqywyrl6cgxn3ba91zsa88ph2yf9d1vn706xpyz19pfb6mjfbg"; }; nativeBuildInputs = [ pkgconfig autoreconfHook ]; diff --git a/pkgs/applications/audio/elisa/default.nix b/pkgs/applications/audio/elisa/default.nix index bda9d3b54bb8..4f2ec36152ae 100644 --- a/pkgs/applications/audio/elisa/default.nix +++ b/pkgs/applications/audio/elisa/default.nix @@ -7,13 +7,13 @@ mkDerivation rec { name = "elisa-${version}"; - version = "0.1.80"; + version = "0.2.0"; src = fetchFromGitHub { owner = "KDE"; repo = "elisa"; rev = "v${version}"; - sha256 = "1kyvdxbsfi692zazw8vjy6mwyy0sa4r1cim8gsiv9pphfh5bpxb1"; + sha256 = "0lpzn55b8gf3byzwv9909x40p98aqlh35vidkrwnnbwgygsa85bw"; }; nativeBuildInputs = [ extra-cmake-modules kdoctools wrapGAppsHook ]; diff --git a/pkgs/applications/audio/muse/default.nix b/pkgs/applications/audio/muse/default.nix new file mode 100644 index 000000000000..9687ff3106bd --- /dev/null +++ b/pkgs/applications/audio/muse/default.nix @@ -0,0 +1,76 @@ +{ stdenv +, fetchFromGitHub +, libjack2 +, qt5 +, cmake +, libsndfile +, libsamplerate +, ladspaH +, fluidsynth +, alsaLib +, rtaudio +, lash +, dssi +, liblo +, pkgconfig +, gitAndTools +}: + +stdenv.mkDerivation rec { + name = "muse-sequencer-${version}"; + version = "3.0.2"; + + meta = with stdenv.lib; { + homepage = http://www.muse-sequencer.org; + description = "MIDI/Audio sequencer with recording and editing capabilities"; + longDescription = '' + MusE is a MIDI/Audio sequencer with recording and editing capabilities + written originally by Werner Schweer now developed and maintained + by the MusE development team. + + MusE aims to be a complete multitrack virtual studio for Linux, + it is published under the GNU General Public License. + ''; + license = stdenv.lib.licenses.gpl2; + }; + + src = + fetchFromGitHub { + owner = "muse-sequencer"; + repo = "muse"; + rev = "02d9dc6abd757c3c1783fdd46dacd3c4ef2c0a6d"; + sha256 = "0pn0mcg79z3bhjwxbss3ylypdz3gg70q5d1ij3x8yw65ryxbqf51"; + }; + + + buildInputs = [ + libjack2 + qt5.qtsvg + qt5.qttools + cmake + libsndfile + libsamplerate + ladspaH + fluidsynth + alsaLib + rtaudio + lash + dssi + liblo + pkgconfig + gitAndTools.gitFull + ]; + + sourceRoot = "source/muse3"; + + buildPhase = '' + cd .. + bash compile_muse.sh + ''; + + installPhase = '' + mkdir $out + cd build + make install + ''; +} diff --git a/pkgs/applications/audio/snd/default.nix b/pkgs/applications/audio/snd/default.nix index 9b386ea7ac7e..272d4b6592ac 100644 --- a/pkgs/applications/audio/snd/default.nix +++ b/pkgs/applications/audio/snd/default.nix @@ -4,11 +4,11 @@ }: stdenv.mkDerivation rec { - name = "snd-18.4"; + name = "snd-18.5"; src = fetchurl { url = "mirror://sourceforge/snd/${name}.tar.gz"; - sha256 = "1asc513d0cmbq0ldzpzmfbydvlj5hwpp480qnicgkn96wplp9c7s"; + sha256 = "1m2rw1p9xr9428p9drd3w5irsi12lz23m605lzgk9gjamq9paywy"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix index 2e82216b7e5d..ed18d34e4a9c 100644 --- a/pkgs/applications/editors/android-studio/default.nix +++ b/pkgs/applications/editors/android-studio/default.nix @@ -13,9 +13,9 @@ let sha256Hash = "196yaswbxh2nd83gimjxr8ggr5xkdxq7n3xlh6ax73v59pj4hryq"; }; latestVersion = { - version = "3.3.0.0"; # "Android Studio 3.3 Canary 1" - build = "181.4861037"; - sha256Hash = "1abilixr386x65qzgp6pwdn41y1xi9h8yihgxhc1c97n90f5gab8"; + version = "3.3.0.1"; # "Android Studio 3.3 Canary 2" + build = "181.4869471"; + sha256Hash = "1v2v09gd5vxh4nzbnrjfh0blpzz71i3i7lq5bkjsfl0g82r8j512"; }; in rec { # Old alias diff --git a/pkgs/applications/editors/atom/default.nix b/pkgs/applications/editors/atom/default.nix index a77792254725..142e9b789948 100644 --- a/pkgs/applications/editors/atom/default.nix +++ b/pkgs/applications/editors/atom/default.nix @@ -21,6 +21,7 @@ let mv $out/usr/* $out/ rm -r $out/share/lintian rm -r $out/usr/ + sed -i "s/${pname})/.${pname}-wrapped)/" $out/bin/${pname} # sed -i "s/'${pname}'/'.${pname}-wrapped'/" $out/bin/${pname} wrapProgram $out/bin/${pname} \ --prefix "PATH" : "${gvfs}/bin" @@ -60,12 +61,12 @@ let }; in stdenv.lib.mapAttrs common { atom = { - version = "1.28.0"; - sha256 = "0k09316897qb9ypkqm6w78nz7sj5385xfdm9bm97m8pka7v61g7h"; + version = "1.28.1"; + sha256 = "03phnbsc45i0r799ni9br7s4qjy05fczbca64jd0sr4jhzi7qmlx"; }; atom-beta = { - version = "1.29.0-beta0"; - sha256 = "05xk63wsjfssf8ckph2bgrxaf99fhz3gs8n8pira8cc9yjk7diz7"; + version = "1.29.0-beta1"; + sha256 = "121y716pnq4vpjrymr505prskvi5a2lnn8hw79q8b4hf7yz0j6rb"; }; } diff --git a/pkgs/applications/editors/atom/env.nix b/pkgs/applications/editors/atom/env.nix index c7e1dfe27364..f93d4042a622 100644 --- a/pkgs/applications/editors/atom/env.nix +++ b/pkgs/applications/editors/atom/env.nix @@ -1,11 +1,11 @@ -{ stdenv, lib, zlib, glib, alsaLib, dbus, gtk2, atk, pango, freetype, fontconfig +{ stdenv, lib, zlib, glib, alsaLib, dbus, gtk3, atk, pango, freetype, fontconfig , libgnome-keyring3, gdk_pixbuf, gvfs, cairo, cups, expat, libgpgerror, nspr , gconf, nss, xorg, libcap, systemd, libnotify, libsecret }: let packages = [ - stdenv.cc.cc zlib glib dbus gtk2 atk pango freetype libgnome-keyring3 + stdenv.cc.cc zlib glib dbus gtk3 atk pango freetype libgnome-keyring3 fontconfig gdk_pixbuf cairo cups expat libgpgerror alsaLib nspr gconf nss xorg.libXrender xorg.libX11 xorg.libXext xorg.libXdamage xorg.libXtst xorg.libXcomposite xorg.libXi xorg.libXfixes xorg.libXrandr diff --git a/pkgs/applications/editors/eclipse/plugins.nix b/pkgs/applications/editors/eclipse/plugins.nix index 28fe3e294b5c..8b03d93d1838 100644 --- a/pkgs/applications/editors/eclipse/plugins.nix +++ b/pkgs/applications/editors/eclipse/plugins.nix @@ -487,6 +487,29 @@ rec { }; }; + jdt-codemining = buildEclipsePlugin rec { + name = "jdt-codemining-${version}"; + version = "1.0.0.201806221018"; + + srcFeature = fetchurl { + url = "http://oss.opensagres.fr/jdt-codemining/snapshot/features/jdt-codemining-feature_${version}.jar"; + sha256 = "1vy30rsb9xifn4r1r2n84d48g6riadzli1xvhfs1mf5pkm5ljwl6"; + }; + + srcPlugin = fetchurl { + url = "http://oss.opensagres.fr/jdt-codemining/snapshot/plugins/org.eclipse.jdt.codemining_${version}.jar"; + sha256 = "0qdzlqcjcm2i4mwhmcdml0am83z1dayrcmf37ji7vmw6iwdk1xmp"; + }; + + meta = with stdenv.lib; { + homepage = https://github.com/angelozerr/jdt-codemining; + description = "Provides JDT Java CodeMining"; + license = licenses.epl10; + platforms = platforms.all; + maintainers = [ maintainers.rycee ]; + }; + }; + rustdt = buildEclipseUpdateSite rec { name = "rustdt-${version}"; version = "0.6.2"; diff --git a/pkgs/applications/editors/edbrowse/default.nix b/pkgs/applications/editors/edbrowse/default.nix index 862739b4ed01..28775e48e1a7 100644 --- a/pkgs/applications/editors/edbrowse/default.nix +++ b/pkgs/applications/editors/edbrowse/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { name = "edbrowse-${version}"; - version = "3.7.3"; + version = "3.7.4"; buildInputs = [ curl pcre readline openssl duktape perl html-tidy ]; @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { owner = "CMB"; repo = "edbrowse"; rev = "v${version}"; - sha256 = "19qdxigp0qv5vyy0hpn0czcc8papvivsjrxx7p367ihizm39yzla"; + sha256 = "0i9ivyfy1dd16c89f392kwx6wxgkkpyq2hl32jhzra0fb0zyl0k6"; }; meta = with stdenv.lib; { description = "Command Line Editor Browser"; diff --git a/pkgs/applications/editors/emacs-modes/icicles/default.nix b/pkgs/applications/editors/emacs-modes/icicles/default.nix index 2277ebef4ff0..884d1724ef8d 100644 --- a/pkgs/applications/editors/emacs-modes/icicles/default.nix +++ b/pkgs/applications/editors/emacs-modes/icicles/default.nix @@ -3,14 +3,14 @@ let modules = [ { name = "icicles.el"; sha256 = "0wxak7wh0rrb3h77ay2vypbb53skcfbrv71xkajhax0w12q6zpaj"; } - { name = "icicles-chg.el"; sha256 = "1kqlhisg5g9ycylzqiwxrmmgfw2jw599wisz26wvi48lac2icgg7"; } - { name = "icicles-cmd1.el"; sha256 = "17cpw798bl6p77cmjl7lwdnxa1qpw4z1wacjq2mdc8fh81cyw3am"; } + { name = "icicles-chg.el"; sha256 = "0qavq9vy566l3qi9n8akrqjcgy8n6k0j8d7vsc7p1jhqvvq812gh"; } + { name = "icicles-cmd1.el"; sha256 = "0lgk6ngl9090iqvvw1c227q7p37mr73cc6ap3ky6b0nv3ql8rkyi"; } { name = "icicles-cmd2.el"; sha256 = "15swxk7fr7wsqpf26xzbvyk12ikkvfcyh9w8wmnpc38dmpyq79rb"; } { name = "icicles-doc1.el"; sha256 = "04j5qvj7pqnjh8h2y2sdgi7x55czdp9xn7yysr3bzcmr1rq5p4bz"; } { name = "icicles-doc2.el"; sha256 = "1k8vfhi3fa4bzsxr074bw5q6srvq6z6hi61rzlxdw7pah6qf7hcz"; } { name = "icicles-face.el"; sha256 = "1pvygqzmh6ag0zhfjn1vhdvlhxybwxzj22ah2pc0ls80dlywhi4l"; } - { name = "icicles-fn.el"; sha256 = "1sn56z5rjsvqsy3vs7af7yai0c0qdjvcxvwwc59rhswrbi6zlxz5"; } - { name = "icicles-mac.el"; sha256 = "1wyvqzlpq5n70mggqijb8f5r5q9y1hxxngp64sixy0xszy5d12dk"; } + { name = "icicles-fn.el"; sha256 = "05v7sc2k2mjm1mbnlkpi01aaxnxnb40540y7g70dg534scjd7w36"; } + { name = "icicles-mac.el"; sha256 = "0nhbwswz6xz7q4g8flszgx12q4gi4nx1d3n4jgz6svr2kk2vmlb4"; } { name = "icicles-mcmd.el"; sha256 = "05dniz6337v9r15w8r2zad0n2h6jlygzjp7vw75vvq8mds0acmia"; } { name = "icicles-mode.el"; sha256 = "1xfv8nryf5y2gygg02naawzm5qhrkba3h84g43518r1xc6rgbpp6"; } { name = "icicles-opt.el"; sha256 = "10n4p999ylkapirs75y5fh33lpiyx42i3ajzl2zjfwyr1zksg1iz"; } @@ -20,7 +20,7 @@ let forAll = f: map f modules; in stdenv.mkDerivation rec { - version = "2018-04-16"; + version = "2018-07-02"; name = "icicles-${version}"; srcs = forAll ({name, sha256}: fetchurl { url = "http://www.emacswiki.org/emacs/download/${name}"; inherit sha256; }); diff --git a/pkgs/applications/editors/focuswriter/default.nix b/pkgs/applications/editors/focuswriter/default.nix index 4b14b1333204..997a4bd253c0 100644 --- a/pkgs/applications/editors/focuswriter/default.nix +++ b/pkgs/applications/editors/focuswriter/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "focuswriter-${version}"; - version = "1.6.13"; + version = "1.6.14"; src = fetchurl { url = "https://gottcode.org/focuswriter/focuswriter-${version}-src.tar.bz2"; - sha256 = "1qs9v5r88scahpyw8ndr622fdnaib9789jvl2jnkwi62zcivbf6n"; + sha256 = "1n8ni4bnw5vs7jx28v8r1vk69g2m1q5h9s6xpf8c0bxbcwwg2m5i"; }; nativeBuildInputs = [ pkgconfig qmake qttools ]; diff --git a/pkgs/applications/editors/rednotebook/default.nix b/pkgs/applications/editors/rednotebook/default.nix index 34f6e4409a6d..9456ea3150a4 100644 --- a/pkgs/applications/editors/rednotebook/default.nix +++ b/pkgs/applications/editors/rednotebook/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonApplication, fetchFromGitHub -, gdk_pixbuf, glib, gtk3, pango, webkitgtk +, gdk_pixbuf, glib, gobjectIntrospection, gtk3, pango, webkitgtk , pygobject3, pyyaml }: @@ -17,6 +17,8 @@ buildPythonApplication rec { # We have not packaged tests. doCheck = false; + nativeBuildInputs = [ gobjectIntrospection ]; + propagatedBuildInputs = [ gdk_pixbuf glib gtk3 pango webkitgtk pygobject3 pyyaml diff --git a/pkgs/applications/editors/texstudio/default.nix b/pkgs/applications/editors/texstudio/default.nix index 938f38174796..790c4ea45c02 100644 --- a/pkgs/applications/editors/texstudio/default.nix +++ b/pkgs/applications/editors/texstudio/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "texstudio"; - version = "2.12.8"; + version = "2.12.10"; name = "${pname}-${version}"; src = fetchFromGitHub { owner = "${pname}-org"; repo = pname; rev = version; - sha256 = "0f1az7398rnxmm3m9b2jcz7pd9x445fjsv8w85k2j261n5cyfqx2"; + sha256 = "0mkx7fym41hwd7cdg31ji2hxlv3gxx0sa6bnap51ryxmq8sxdjhq"; }; nativeBuildInputs = [ qt5.qmake pkgconfig ]; diff --git a/pkgs/applications/editors/vim/common.nix b/pkgs/applications/editors/vim/common.nix index a93054a9aeb8..2ce6563be0bd 100644 --- a/pkgs/applications/editors/vim/common.nix +++ b/pkgs/applications/editors/vim/common.nix @@ -1,12 +1,12 @@ { lib, fetchFromGitHub }: rec { - version = "8.1.0001"; + version = "8.1.0146"; src = fetchFromGitHub { owner = "vim"; repo = "vim"; rev = "v${version}"; - sha256 = "056h9cyysyh6hqsr1s9xg94la554f56lwnpk87g013xmqf37bna6"; + sha256 = "1v33h08j15zii0ipw5py18ghsaxlbar0nyx365z1acjhk4vhn9nb"; }; enableParallelBuilding = true; diff --git a/pkgs/applications/editors/vscode/default.nix b/pkgs/applications/editors/vscode/default.nix index 4b1d26742d69..d79a50855f39 100644 --- a/pkgs/applications/editors/vscode/default.nix +++ b/pkgs/applications/editors/vscode/default.nix @@ -1,8 +1,8 @@ { stdenv, lib, callPackage, fetchurl, unzip, atomEnv, makeDesktopItem, - makeWrapper, libXScrnSaver, libxkbfile, libsecret }: + gtk2, makeWrapper, libXScrnSaver, libxkbfile, libsecret }: let - version = "1.24.0"; + version = "1.25.0"; channel = "stable"; plat = { @@ -12,15 +12,16 @@ let }.${stdenv.system}; sha256 = { - "i686-linux" = "17dvyp31kf12mfs6z3cm8rxfrvrmbrk9gbsk3z7v284z64dry9vz"; - "x86_64-linux" = "11m50lb0hvnmvb3qdixgpvdzcljzm94qxl41240g4qh4a36qvr1j"; - "x86_64-darwin" = "1wm6h3f8b33rky5nlrvwx4qx0k9h72aabiz6sm27x1wrs486p3lf"; + "i686-linux" = "1dgn9swqax54pn5ykk97zdkkzyj46jambmnkb67cn44p29bw9s9m"; + "x86_64-linux" = "0w2lzif7iilibvwhvg13gxarwz41qsb72s8hvj87mk5iqfdms1px"; + "x86_64-darwin" = "08xhwvggflzh9lfc5s3jgrqb49yz4jdfii8sfq6v8w3c6yy8cdly"; }.${stdenv.system}; archive_fmt = if stdenv.system == "x86_64-darwin" then "zip" else "tar.gz"; rpath = lib.concatStringsSep ":" [ atomEnv.libPath + "${lib.makeLibraryPath [gtk2]}" "${lib.makeLibraryPath [libsecret]}/libsecret-1.so.0" "${lib.makeLibraryPath [libXScrnSaver]}/libXss.so.1" "${lib.makeLibraryPath [libxkbfile]}/libxkbfile.so.1" diff --git a/pkgs/applications/graphics/ImageMagick/7.0.nix b/pkgs/applications/graphics/ImageMagick/7.0.nix index fb390c0995e0..d8c11f33439a 100644 --- a/pkgs/applications/graphics/ImageMagick/7.0.nix +++ b/pkgs/applications/graphics/ImageMagick/7.0.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, fetchpatch, pkgconfig, libtool , bzip2, zlib, libX11, libXext, libXt, fontconfig, freetype, ghostscript, libjpeg -, lcms2, openexr, libpng, librsvg, libtiff, libxml2, openjpeg, libwebp +, lcms2, openexr, libpng, librsvg, libtiff, libxml2, openjpeg, libwebp, libheif , ApplicationServices , buildPlatform, hostPlatform }: @@ -54,7 +54,7 @@ stdenv.mkDerivation rec { buildInputs = [ zlib fontconfig freetype ghostscript - libpng libtiff libxml2 + libpng libtiff libxml2 libheif ] ++ lib.optionals (!hostPlatform.isMinGW) [ openexr librsvg openjpeg ] diff --git a/pkgs/applications/graphics/ImageMagick/default.nix b/pkgs/applications/graphics/ImageMagick/default.nix index 3af6e19b7011..b767f11da00b 100644 --- a/pkgs/applications/graphics/ImageMagick/default.nix +++ b/pkgs/applications/graphics/ImageMagick/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, fetchpatch, pkgconfig, libtool , bzip2, zlib, libX11, libXext, libXt, fontconfig, freetype, ghostscript, libjpeg -, lcms2, openexr, libpng, librsvg, libtiff, libxml2, openjpeg, libwebp, fftw +, lcms2, openexr, libpng, librsvg, libtiff, libxml2, openjpeg, libwebp, fftw, libheif, libde265 , ApplicationServices , buildPlatform, hostPlatform }: @@ -66,7 +66,7 @@ stdenv.mkDerivation rec { buildInputs = [ zlib fontconfig freetype ghostscript - libpng libtiff libxml2 + libpng libtiff libxml2 libheif libde265 ] ++ lib.optionals (!hostPlatform.isMinGW) [ openexr librsvg openjpeg ] diff --git a/pkgs/applications/graphics/fbida/default.nix b/pkgs/applications/graphics/fbida/default.nix index 2e91f7873501..33d65a860764 100644 --- a/pkgs/applications/graphics/fbida/default.nix +++ b/pkgs/applications/graphics/fbida/default.nix @@ -3,11 +3,11 @@ , epoxy, poppler, mesa_noglu, lirc }: stdenv.mkDerivation rec { - name = "fbida-2.13"; + name = "fbida-2.14"; src = fetchurl { url = "http://dl.bytesex.org/releases/fbida/${name}.tar.gz"; - sha256 = "01yv4qqqfbz9v281y2jlxhxdym3ricyb0zkqkgp5b40qrmfik1x8"; + sha256 = "0f242mix20rgsqz1llibhsz4r2pbvx6k32rmky0zjvnbaqaw1dwm"; }; nativeBuildInputs = [ pkgconfig which ]; @@ -17,12 +17,12 @@ stdenv.mkDerivation rec { mesa_noglu ]; - makeFlags = [ "prefix=$(out)" "verbose=yes" "STRIP=" ]; + makeFlags = [ "prefix=$(out)" "verbose=yes" "STRIP=" "JPEG_VER=62" ]; - patchPhase = - '' + patchPhase = '' sed -e 's@ cpp\>@ gcc -E -@' -i GNUmakefile - ''; + sed -e 's@$(HAVE_LINUX_FB_H)@yes@' -i GNUmakefile + ''; meta = with stdenv.lib; { description = "Image viewing and manipulation programs"; diff --git a/pkgs/applications/graphics/feh/default.nix b/pkgs/applications/graphics/feh/default.nix index dad378affbea..4ec4b76ac047 100644 --- a/pkgs/applications/graphics/feh/default.nix +++ b/pkgs/applications/graphics/feh/default.nix @@ -6,11 +6,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "feh-${version}"; - version = "2.26.4"; + version = "2.27"; src = fetchurl { url = "https://feh.finalrewind.org/${name}.tar.bz2"; - sha256 = "15a7hjg7xwj1hsw3c5k18psvvmbqgn4g79qq03bsvibzl4kqakq7"; + sha256 = "0kn6cka9m76697i495npd60ad64jnfnzv5z6znzyr0vlxx2nhcmg"; }; outputs = [ "out" "man" "doc" ]; diff --git a/pkgs/applications/graphics/gimp/default.nix b/pkgs/applications/graphics/gimp/default.nix index f92594f08e16..8e18d531605c 100644 --- a/pkgs/applications/graphics/gimp/default.nix +++ b/pkgs/applications/graphics/gimp/default.nix @@ -2,18 +2,18 @@ , pango, cairo, freetype, fontconfig, lcms, libpng, libjpeg, poppler, poppler_data, libtiff , libmng, librsvg, libwmf, zlib, libzip, ghostscript, aalib, shared-mime-info , python2Packages, libexif, gettext, xorg, glib-networking, libmypaint, gexiv2 -, harfbuzz, mypaint-brushes, libwebp, libgudev, openexr +, harfbuzz, mypaint-brushes, libwebp, libheif, libgudev, openexr , AppKit, Cocoa, gtk-mac-integration }: let inherit (python2Packages) pygtk wrapPython python; in stdenv.mkDerivation rec { name = "gimp-${version}"; - version = "2.10.2"; + version = "2.10.4"; src = fetchurl { url = "http://download.gimp.org/pub/gimp/v${stdenv.lib.versions.majorMinor version}/${name}.tar.bz2"; - sha256 = "1srkqd9cx1xmny7cyk3b6f14dknb3fd77whm38vlvr7grnpbmc0w"; + sha256 = "14pi0q3wwkapy0inqxk1hjsa2h8lff1z4wgdsyrk29jaw66pdc7z"; }; nativeBuildInputs = [ autoreconfHook pkgconfig intltool gettext wrapPython ]; @@ -21,7 +21,7 @@ in stdenv.mkDerivation rec { buildInputs = [ babl gegl gtk2 glib gdk_pixbuf pango cairo gexiv2 harfbuzz isocodes freetype fontconfig lcms libpng libjpeg poppler poppler_data libtiff openexr - libmng librsvg libwmf zlib libzip ghostscript aalib shared-mime-info libwebp + libmng librsvg libwmf zlib libzip ghostscript aalib shared-mime-info libwebp libheif python pygtk libexif xorg.libXpm glib-networking libmypaint mypaint-brushes ] ++ stdenv.lib.optionals stdenv.isDarwin [ AppKit Cocoa gtk-mac-integration ] ++ stdenv.lib.optionals stdenv.isLinux [ libgudev ]; diff --git a/pkgs/applications/graphics/graphicsmagick/default.nix b/pkgs/applications/graphics/graphicsmagick/default.nix index 872afb39ec6f..2c322128c386 100644 --- a/pkgs/applications/graphics/graphicsmagick/default.nix +++ b/pkgs/applications/graphics/graphicsmagick/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { name = "graphicsmagick-${version}"; - version = "1.3.29"; + version = "1.3.30"; src = fetchurl { url = "mirror://sourceforge/graphicsmagick/GraphicsMagick-${version}.tar.xz"; - sha256 = "1m0cc6kpky06lpcipj7rfwc2jbw2igr0jk97zqmw3j1ld5mg93g1"; + sha256 = "1warar0731xf94r4bn5x1km85rjabl4iq8r0dk3ywmczap3farfr"; }; patches = [ diff --git a/pkgs/applications/graphics/krita/default.nix b/pkgs/applications/graphics/krita/default.nix index 690253947a18..1fd19162a4f7 100644 --- a/pkgs/applications/graphics/krita/default.nix +++ b/pkgs/applications/graphics/krita/default.nix @@ -2,18 +2,19 @@ , karchive, kconfig, kwidgetsaddons, kcompletion, kcoreaddons , kguiaddons, ki18n, kitemmodels, kitemviews, kwindowsystem , kio, kcrash -, boost, libraw, fftw, eigen, exiv2, lcms2, gsl, openexr +, boost, libraw, fftw, eigen, exiv2, libheif, lcms2, gsl, openexr, giflib , openjpeg, opencolorio, vc, poppler_qt5, curl, ilmbase , qtmultimedia, qtx11extras +, python3 }: mkDerivation rec { name = "krita-${version}"; - version = "4.0.3"; + version = "4.1.0"; src = fetchurl { url = "https://download.kde.org/stable/krita/${version}/${name}.tar.gz"; - sha256 = "0zmn29dzqncc80pvy9ymgyzqw8x1ryq8b4x5mr4sz15iyj7xgspr"; + sha256 = "1mbyybc7h3sblbaklvz0cci3ys4zcyi616fgdn06p62v2vw2sybq"; }; nativeBuildInputs = [ cmake extra-cmake-modules ]; @@ -21,9 +22,10 @@ mkDerivation rec { buildInputs = [ karchive kconfig kwidgetsaddons kcompletion kcoreaddons kguiaddons ki18n kitemmodels kitemviews kwindowsystem kio kcrash - boost libraw fftw eigen exiv2 lcms2 gsl openexr + boost libraw fftw eigen exiv2 lcms2 gsl openexr libheif giflib openjpeg opencolorio vc poppler_qt5 curl ilmbase qtmultimedia qtx11extras + python3 ]; NIX_CFLAGS_COMPILE = [ "-I${ilmbase.dev}/include/OpenEXR" ]; diff --git a/pkgs/applications/graphics/write_stylus/default.nix b/pkgs/applications/graphics/write_stylus/default.nix new file mode 100644 index 000000000000..a1c39fadb59d --- /dev/null +++ b/pkgs/applications/graphics/write_stylus/default.nix @@ -0,0 +1,52 @@ +{ stdenv, lib, qtbase, qtsvg, makeWrapper, fetchurl, makeDesktopItem }: +stdenv.mkDerivation rec { + name = "write_stylus-${version}"; + version = "209"; + + desktopItem = makeDesktopItem { + name = "Write"; + exec = "Write"; + comment = "a word processor for hadwriting"; + desktopName = "Write"; + genericName = "Write"; + categories = "Office;Graphics"; + }; + + src = fetchurl { + url = "http://www.styluslabs.com/write/write${version}.tar.gz"; + sha256 = "1p6glp4vdpwl8hmhypayc4cvs3j9jfmjfhhrgqm2xkgl5bfbv2qd"; + }; + sourceRoot = "."; + + dontBuild = true; + + installPhase = '' + mkdir -p $out/bin + cp -R Write $out/ + # symlink the binary to bin/ + ln -s $out/Write/Write $out/bin/Write + + mkdir -p $out/share/applications + ln -s ${desktopItem}/share/applications/* $out/share/applications/ + ''; + preFixup = let + libPath = lib.makeLibraryPath [ + qtbase # libQt5PrintSupport.so.5 + qtsvg # libQt5Svg.so.5 + stdenv.cc.cc.lib # libstdc++.so.6 + ]; + in '' + patchelf \ + --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ + --set-rpath "${libPath}" \ + $out/Write/Write + ''; + + meta = with stdenv.lib; { + homepage = http://www.styluslabs.com/; + description = "Write is a word processor for handwriting."; + platforms = platforms.linux; + license = stdenv.lib.licenses.unfree; + maintainers = with maintainers; [ oyren ]; + }; +} diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix index e565b51cf509..698485fb086f 100644 --- a/pkgs/applications/misc/alacritty/default.nix +++ b/pkgs/applications/misc/alacritty/default.nix @@ -92,6 +92,10 @@ in buildRustPackage rec { patchelf --set-rpath "${stdenv.lib.makeLibraryPath rpathLibs}" $out/bin/alacritty '') + '' + install -D alacritty-completions.zsh "$out/share/zsh/site-functions/_alacritty" + install -D alacritty-completions.bash "$out/etc/bash_completion.d/alacritty-completions.bash" + install -D alacritty-completions.fish "$out/share/fish/vendor_completions.d/alacritty.fish" + runHook postInstall ''; diff --git a/pkgs/applications/misc/barrier/default.nix b/pkgs/applications/misc/barrier/default.nix index 0bc12e269c0e..6151b3d55ab7 100644 --- a/pkgs/applications/misc/barrier/default.nix +++ b/pkgs/applications/misc/barrier/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, cmake, curl, xorg, avahi, qt5, +{ stdenv, fetchpatch, fetchurl, cmake, curl, xorg, avahi, qt5, avahiWithLibdnssdCompat ? avahi.override { withLibdnssdCompat = true; } }: @@ -13,9 +13,18 @@ stdenv.mkDerivation rec { buildInputs = [ cmake curl xorg.libX11 xorg.libXext xorg.libXtst avahiWithLibdnssdCompat ]; propagatedBuildInputs = with qt5; [ qtbase ]; + patches = [ + # Fix compilation on Qt 5.11 + # Patch should be removed on next version bump from 2.1.1! + (fetchpatch { + url = "https://github.com/debauchee/barrier/commit/a956cad0da23f544b874888c6c3540dc7f8f22cf.patch"; + sha256 = "0x5045bdks1f9casp0v7svx9ml1gxhkhw5sqc7xk36h184m24a21"; + }) + ]; + postFixup = '' - substituteInPlace "$out/share/applications/barrier.desktop" --replace "Exec=barrier" "Exec=$out/bin/barrier" - ''; + substituteInPlace "$out/share/applications/barrier.desktop" --replace "Exec=barrier" "Exec=$out/bin/barrier" + ''; meta = { description = "Open-source KVM software"; diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix index cfd869e5592f..c2ae98d71e7f 100644 --- a/pkgs/applications/misc/calibre/default.nix +++ b/pkgs/applications/misc/calibre/default.nix @@ -5,12 +5,12 @@ }: stdenv.mkDerivation rec { - version = "3.26.1"; + version = "3.27.0"; name = "calibre-${version}"; src = fetchurl { url = "https://download.calibre-ebook.com/${version}/${name}.tar.xz"; - sha256 = "0i53095g6wl3ghhpzfrvizj24b8zxbxs1c7bvcj3fpkf43wd45j0"; + sha256 = "1367fhgqynh6ic318wppv4m7343ghvdgazm4qq2jqli8y1gxdfbz"; }; patches = [ diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/misc/chirp/default.nix index 16f63cfcd107..148031273bed 100644 --- a/pkgs/applications/misc/chirp/default.nix +++ b/pkgs/applications/misc/chirp/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "chirp-daily-${version}"; - version = "20180614"; + version = "20180623"; src = fetchurl { url = "https://trac.chirp.danplanet.com/chirp_daily/daily-${version}/${name}.tar.gz"; - sha256 = "011bxd418hrl88rhp6lhja68b2kvnm1b845v41g9qfsagvfmbv3g"; + sha256 = "0s7b5w98rblqfcpvaxkkri0sfqxmqjwgdf8syzva50vm7swrg946"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/misc/coursera-dl/default.nix b/pkgs/applications/misc/coursera-dl/default.nix index a7a2dac26c6e..a6afee13e47b 100644 --- a/pkgs/applications/misc/coursera-dl/default.nix +++ b/pkgs/applications/misc/coursera-dl/default.nix @@ -4,21 +4,21 @@ let pythonPackages = python3.pkgs; in pythonPackages.buildPythonApplication rec { - name = "coursera-dl-${version}"; - version = "0.10.0"; + pname = "coursera-dl"; + version = "0.11.4"; src = fetchFromGitHub { owner = "coursera-dl"; repo = "coursera-dl"; rev = version; - sha256 = "0m3f6ly8c3mkb8yy2y398afswqgy17rz159s1054wzxpb4f85zlb"; + sha256 = "0dn7a6s98dwba62r0dyabq8pryzga4b2wpx88i9bmp7ja1b1f92f"; }; nativeBuildInputs = with pythonPackages; [ pandoc ]; buildInputs = with pythonPackages; [ glibcLocales ]; - propagatedBuildInputs = with pythonPackages; [ beautifulsoup4 ConfigArgParse keyring pyasn1 requests six urllib3 ]; + propagatedBuildInputs = with pythonPackages; [ attrs beautifulsoup4 ConfigArgParse keyring pyasn1 requests six urllib3 ]; checkInputs = with pythonPackages; [ pytest mock ]; diff --git a/pkgs/applications/misc/dbeaver/default.nix b/pkgs/applications/misc/dbeaver/default.nix index 36aca5e17295..ed08356fdc5a 100644 --- a/pkgs/applications/misc/dbeaver/default.nix +++ b/pkgs/applications/misc/dbeaver/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { name = "dbeaver-ce-${version}"; - version = "5.1.1"; + version = "5.1.2"; desktopItem = makeDesktopItem { name = "dbeaver"; @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://dbeaver.io/files/${version}/dbeaver-ce-${version}-linux.gtk.x86_64.tar.gz"; - sha256 = "1ll1q585b7yca9jrgg7iw7i6xhyy1wc9q8hjqj1g3gzdagbrf396"; + sha256 = "1p1klrasasc440qzxsn96lcgfib5qwhl508gvwrbslvmija6m6b2"; }; installPhase = '' diff --git a/pkgs/applications/misc/digitalbitbox/default.nix b/pkgs/applications/misc/digitalbitbox/default.nix index fbd9d47633a1..09b6db3abf9a 100644 --- a/pkgs/applications/misc/digitalbitbox/default.nix +++ b/pkgs/applications/misc/digitalbitbox/default.nix @@ -3,6 +3,7 @@ , curl , fetchFromGitHub , git +, libcap , libevent , libtool , libqrencode @@ -67,6 +68,8 @@ in stdenv.mkDerivation rec { ]; buildInputs = with stdenv.lib; [ + # TODO: remove libcap when pruneLibtoolFiles applies to pulseaudio. + libcap libevent libtool libudev @@ -112,6 +115,8 @@ in stdenv.mkDerivation rec { ${copyUdevRuleToOutput "52-hid-digitalbox.rules" udevRule52} ''; + enableParallelBuilding = true; + meta = with stdenv.lib; { description = "A QT based application for the Digital Bitbox hardware wallet"; longDescription = '' diff --git a/pkgs/applications/misc/dunst/default.nix b/pkgs/applications/misc/dunst/default.nix index 1a809307cc12..12f1f78acb9e 100644 --- a/pkgs/applications/misc/dunst/default.nix +++ b/pkgs/applications/misc/dunst/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, makeWrapper , pkgconfig, which, perl, libXrandr , cairo, dbus, systemd, gdk_pixbuf, glib, libX11, libXScrnSaver -, libXinerama, libnotify, libxdg_basedir, pango, xproto, librsvg +, libXinerama, libnotify, libxdg_basedir, pango, xproto, librsvg, dunstify ? false }: stdenv.mkDerivation rec { @@ -31,7 +31,11 @@ stdenv.mkDerivation rec { "SERVICEDIR_SYSTEMD=$(out)/lib/systemd/user" ]; - postInstall = '' + buildFlags = if dunstify then [ "dunstify" ] else []; + + postInstall = stdenv.lib.optionalString dunstify '' + install -Dm755 dunstify $out/bin + '' + '' wrapProgram $out/bin/dunst \ --set GDK_PIXBUF_MODULE_FILE "$GDK_PIXBUF_MODULE_FILE" ''; diff --git a/pkgs/applications/misc/glava/default.nix b/pkgs/applications/misc/glava/default.nix new file mode 100644 index 000000000000..d115d1ae1d24 --- /dev/null +++ b/pkgs/applications/misc/glava/default.nix @@ -0,0 +1,105 @@ +{ stdenv, fetchurl, writeScript, fetchFromGitHub +, libGL, libX11, libXext, python3, libXrandr, libXrender, libpulseaudio, libXcomposite +, enableGlfw ? false, glfw }: + +let + inherit (stdenv.lib) optional makeLibraryPath; + + version = "1.4.5"; + gladVersion = "0.1.24"; + # glad + # https://github.com/wacossusca34/glava/issues/46#issuecomment-397816520 + glad = fetchFromGitHub { + owner = "Dav1dde"; + repo = "glad"; + rev = "v${gladVersion}"; + sha256 = "0s2c9w064kqa5i07w8zmvgpg1pa3wj86l1nhgw7w56cjhq7cf8h8"; + }; + # gl.xml + gl = fetchurl { + url = https://raw.githubusercontent.com/KhronosGroup/OpenGL-Registry/a24f3f7a4c924fdbc666024f99c70e5b8e34c819/xml/gl.xml; + sha256 = "1mskxjmhb35m8qv255pibf633d8sn1w9rdsf0lj75bhlgy0zi5c7"; + }; + # EGL 1.5 + egl = fetchurl { + url = https://www.khronos.org/registry/EGL/api/KHR/khrplatform.h; + sha256 = "0p0vs4siiya05cvbqq7cw3ci2zvvlfh8kycgm9k9cwvmrkj08349"; + }; + + wrapperScript = writeScript "glava" '' + #!${stdenv.shell} + case "$1" in + --copy-config) + # The binary would symlink it, which won't work in Nix because the + # garbage collector will eventually remove the original files after + # updates + echo "Nix wrapper: Copying glava config to ~/.config/glava" + cp -r --no-preserve=all @out@/etc/xdg/glava ~/.config/glava + ;; + *) + exec @out@/bin/.glava-unwrapped "$@" + esac + ''; +in + stdenv.mkDerivation rec { + name = "glava-${version}"; + + src = fetchFromGitHub { + owner = "wacossusca34"; + repo = "glava"; + rev = "v${version}"; + sha256 = "1zfw8samrzxxbny709rcdz1z77cw1cd46wlfnf7my02kipmqn0nr"; + }; + + buildInputs = [ + libX11 + libXext + libXrandr + libXrender + libpulseaudio + libXcomposite + ] ++ optional enableGlfw glfw; + + nativeBuildInputs = [ + python3 + ]; + + patchPhase = '' + cp -r --no-preserve=all ${glad}/* glad + mkdir -p glad/include/KHR + + cp ${gl} glad/gl.xml + cp ${egl} glad/include/KHR/khrplatform.h + patchShebangs . + ''; + + makeFlags = optional (!enableGlfw) "DISABLE_GLFW=1"; + + installFlags = [ + "DESTDIR=$(out)" + ]; + + fixupPhase = '' + mkdir -p $out/bin + mv $out/usr/bin/glava $out/bin/.glava-unwrapped + rm -rf $out/usr + + patchelf $out/bin/.glava-unwrapped \ + --set-rpath "$(patchelf --print-rpath $out/bin/.glava-unwrapped):${makeLibraryPath [ libGL ]}" \ + + substitute ${wrapperScript} $out/bin/glava --subst-var out + chmod +x $out/bin/glava + ''; + + meta = with stdenv.lib; { + description = '' + OpenGL audio spectrum visualizer + ''; + homepage = https://github.com/wacossusca34/glava; + platforms = platforms.linux; + license = licenses.gpl3; + maintainers = with maintainers; [ + eadwu + ]; + }; + } diff --git a/pkgs/applications/misc/ipmicfg/default.nix b/pkgs/applications/misc/ipmicfg/default.nix index af7d257eed6e..e150ab457e07 100644 --- a/pkgs/applications/misc/ipmicfg/default.nix +++ b/pkgs/applications/misc/ipmicfg/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { name = "ipmicfg-${version}"; - version = "1.27.1"; - buildVersion = "170901"; + version = "1.28.0"; + buildVersion = "180302"; src = fetchzip { url = "ftp://ftp.supermicro.com/utility/IPMICFG/IPMICFG_${version}_build.${buildVersion}.zip"; - sha256 = "11xhzw36pg4has8857pypf44cni8m2mg8qsqi1s4bfjbxlfgxgwk"; + sha256 = "0hw853cwaaxmxy1sa3m7l9gqalwpbbvp4ghk8inr7dzwxjljmr02"; extraPostFetch = "chmod u+rwX,go-rwx+X $out/"; }; diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix index d79e2620c343..97b60080365f 100644 --- a/pkgs/applications/misc/josm/default.nix +++ b/pkgs/applications/misc/josm/default.nix @@ -1,15 +1,15 @@ -{ fetchurl, stdenv, makeDesktopItem, makeWrapper, unzip, bash, jre8 }: +{ fetchurl, stdenv, makeDesktopItem, makeWrapper, unzip, bash, jre10 }: stdenv.mkDerivation rec { name = "josm-${version}"; - version = "13878"; + version = "13996"; src = fetchurl { url = "https://josm.openstreetmap.de/download/josm-snapshot-${version}.jar"; - sha256 = "0f8cbzlrlyq8awhzgbjvsljih19s8dzxhhwb4h2dfiakv1rl6vvx"; + sha256 = "1j98wxw84f5rf3finr38bkr1sh9ckah8pmhmxyhmcw2rxf1mv9bf"; }; - buildInputs = [ jre8 makeWrapper ]; + buildInputs = [ jre10 makeWrapper ]; desktopItem = makeDesktopItem { name = "josm"; @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { mkdir -p $out/bin $out/share/java cp -v $src $out/share/java/josm.jar - makeWrapper ${jre8}/bin/java $out/bin/josm \ + makeWrapper ${jre10}/bin/java $out/bin/josm \ --add-flags "-jar $out/share/java/josm.jar" mkdir -p $out/share/applications diff --git a/pkgs/applications/misc/khard/default.nix b/pkgs/applications/misc/khard/default.nix index c626aaca66bd..075640f702cb 100644 --- a/pkgs/applications/misc/khard/default.nix +++ b/pkgs/applications/misc/khard/default.nix @@ -1,6 +1,22 @@ -{ stdenv, fetchurl, fetchFromGitHub, glibcLocales, python3Packages }: +{ stdenv, fetchurl, fetchFromGitHub, glibcLocales, python3 }: -python3Packages.buildPythonApplication rec { +let + python = python3.override { + packageOverrides = self: super: { + + # https://github.com/pimutils/khal/issues/780 + python-dateutil = super.python-dateutil.overridePythonAttrs (oldAttrs: rec { + version = "2.6.1"; + src = oldAttrs.src.override { + inherit version; + sha256 = "891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca"; + }; + }); + + }; + }; + +in with python.pkgs; buildPythonApplication rec { version = "0.12.2"; name = "khard-${version}"; namePrefix = ""; @@ -14,7 +30,7 @@ python3Packages.buildPythonApplication rec { LC_ALL = "en_US.UTF-8"; buildInputs = [ glibcLocales ]; - propagatedBuildInputs = with python3Packages; [ + propagatedBuildInputs = [ atomicwrites configobj vobject diff --git a/pkgs/applications/misc/kitty/default.nix b/pkgs/applications/misc/kitty/default.nix index 99c8b87bf4f5..38c2494c9f7d 100644 --- a/pkgs/applications/misc/kitty/default.nix +++ b/pkgs/applications/misc/kitty/default.nix @@ -1,11 +1,13 @@ { stdenv, fetchFromGitHub, pkgs, python3Packages, glfw, libunistring, harfbuzz, fontconfig, zlib, pkgconfig, ncurses, imagemagick, makeWrapper, xsel, libstartup_notification, libX11, libXrandr, libXinerama, libXcursor, - libxkbcommon, libXi, libXext }: + libxkbcommon, libXi, libXext, wayland-protocols, wayland, + which +}: with python3Packages; buildPythonApplication rec { - version = "0.10.1"; + version = "0.11.2"; name = "kitty-${version}"; format = "other"; @@ -13,19 +15,24 @@ buildPythonApplication rec { owner = "kovidgoyal"; repo = "kitty"; rev = "v${version}"; - sha256 = "1xwrrj0g70hh8zsjbd05x0js776xlf7c6mdsmrqlw4y7jfnlgl45"; + sha256 = "0vmxgyxrgaqijwd51ldd8pkz7jn9hdcfib1dqr0ai614286v69hw"; }; buildInputs = [ fontconfig glfw ncurses libunistring harfbuzz libX11 libXrandr libXinerama libXcursor libxkbcommon libXi libXext + wayland-protocols wayland ]; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ pkgconfig which sphinx ]; postPatch = '' substituteInPlace kitty/utils.py \ --replace "find_library('startup-notification-1')" "'${libstartup_notification}/lib/libstartup-notification-1.so'" + + substituteInPlace docs/Makefile \ + --replace 'python3 .. +launch $(shell which sphinx-build)' \ + 'PYTHONPATH=$PYTHONPATH:.. HOME=$TMPDIR/nowhere $(shell which sphinx-build)' ''; buildPhase = '' diff --git a/pkgs/applications/misc/krename/default.nix b/pkgs/applications/misc/krename/default.nix index e686ec94a4a3..a0a2776ae360 100644 --- a/pkgs/applications/misc/krename/default.nix +++ b/pkgs/applications/misc/krename/default.nix @@ -1,5 +1,5 @@ { - mkDerivation, fetchFromGitHub, lib, + mkDerivation, fetchurl, lib, extra-cmake-modules, kdoctools, wrapGAppsHook, kconfig, kinit, kjsembed, taglib, exiv2, podofo, kcrash @@ -7,15 +7,14 @@ let pname = "krename"; - version = "20170610"; + version = "5.0.0"; + in mkDerivation rec { name = "${pname}-${version}"; - src = fetchFromGitHub { - owner = "KDE"; - repo = "krename"; - rev = "18000edfec52de0b417d575e14eb078b4bd7b2f3"; - sha256 = "0hsrlfrbi42jqqnkcz682c6yrfi3xpl299672knj22074wr6sv0j"; + src = fetchurl { + url = "mirror://kde/stable/${pname}/${version}/src/${name}.tar.xz"; + sha256 = "136j1dkqrhv458rjh5v3vzjhvq6dhz7k79zk6mmx8zvqacc7cq8a"; }; meta = with lib; { diff --git a/pkgs/applications/misc/orca/default.nix b/pkgs/applications/misc/orca/default.nix index e05cb0ad6f9d..ca06b5fa6df6 100644 --- a/pkgs/applications/misc/orca/default.nix +++ b/pkgs/applications/misc/orca/default.nix @@ -10,7 +10,7 @@ with lib; let pname = "orca"; - version = "3.28.1"; + version = "3.28.2"; in buildPythonApplication rec { name = "${pname}-${version}"; @@ -18,7 +18,7 @@ in buildPythonApplication rec { src = fetchurl { url = "mirror://gnome/sources/${pname}/${gnome3.versionBranch version}/${name}.tar.xz"; - sha256 = "04l5ccn7wf175gyq3blfpx0yh70ny06n161297jwc9idf951852g"; + sha256 = "08rh6ji680g5nrw2n7jrxrw7nwg04sj52jxffcfasgss2f51d38q"; }; patches = [ diff --git a/pkgs/applications/misc/rtv/default.nix b/pkgs/applications/misc/rtv/default.nix index ed54e523c8f8..d20276968244 100644 --- a/pkgs/applications/misc/rtv/default.nix +++ b/pkgs/applications/misc/rtv/default.nix @@ -2,14 +2,14 @@ with pythonPackages; buildPythonApplication rec { - version = "1.22.1"; + version = "1.23.0"; name = "rtv-${version}"; src = fetchFromGitHub { owner = "michael-lazar"; repo = "rtv"; rev = "v${version}"; - sha256 = "1jil8cwhnpf2mclgah7s79j4c38hzm0j6di2mffrqhlsnn2vxbf4"; + sha256 = "0i6iqj3ly1bgsfa9403m5190mfl9yk1x4ific3v31wqfja985nsr"; }; # Tests try to access network diff --git a/pkgs/applications/misc/slic3r/prusa3d.nix b/pkgs/applications/misc/slic3r/prusa3d.nix index f8b5f45d9c51..11a5baa288dd 100644 --- a/pkgs/applications/misc/slic3r/prusa3d.nix +++ b/pkgs/applications/misc/slic3r/prusa3d.nix @@ -33,7 +33,7 @@ let in stdenv.mkDerivation rec { name = "slic3r-prusa-edition-${version}"; - version = "1.40.0"; + version = "1.40.1"; enableParallelBuilding = true; @@ -92,7 +92,7 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "prusa3d"; repo = "Slic3r"; - sha256 = "1cisplrfv6y9ijgl5bs46bxxmid5hl71hjzl73bay2i2bl8hid2f"; + sha256 = "022mdz8824wg68qwgd49gnplw7wn84hqw113xh8l25v3j1jb9zmc"; rev = "version_${version}"; }; diff --git a/pkgs/applications/misc/urh/default.nix b/pkgs/applications/misc/urh/default.nix index cf461c498c1c..7bf9aca029b9 100644 --- a/pkgs/applications/misc/urh/default.nix +++ b/pkgs/applications/misc/urh/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonApplication rec { name = "urh-${version}"; - version = "2.1.1"; + version = "2.2.2"; src = fetchFromGitHub { owner = "jopohl"; repo = "urh"; rev = "v${version}"; - sha256 = "1n8nkrydic2zkglz9hyrf28np3v42b4xwia068b29szivr9fmnrn"; + sha256 = "0ncvfl5iyngw3lr2g7awpskrrld6y0x7w0xyp827lcr7x73fvqgp"; }; buildInputs = [ hackrf rtl-sdr ]; diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix index 9be83bc3678f..aae86ecf0814 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix @@ -1,995 +1,995 @@ { - version = "62.0b3"; + version = "62.0b6"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b3/linux-x86_64/ach/firefox-62.0b3.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b6/linux-x86_64/ach/firefox-62.0b6.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha512 = "30ede248dbc0a8d9375d372dd1c0260dbf7fbbb398d1528400933953da56ef018cf7bac604bef1138a5454fde8cbb96906f65b0afe3605dc9ff5edee91245c41"; + sha512 = "2147f2a452deb1f7ee7c5292a218075b38b541dddaabc6ef28c3bdf115dbfe415b82b3400da057783d13ccc53d7eeca0d8b7ad8c416409acd15787d9b9f9cafb"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b3/linux-x86_64/af/firefox-62.0b3.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b6/linux-x86_64/af/firefox-62.0b6.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha512 = "52227774b4c0f4817c208ca46f68d09fcdd9865867a438ec2eda8dcb66564e7cc7f88d3102dcaa1de6edf428b16167a2460b181facd2b12a2dd0c287deac75e8"; + sha512 = "563b003eeca4180414ef5e78a49cdabe4defe39cf4195b2c4d5b677536bfe05d6532c0c204164fec630e61cd4aa3191fcc1734bb7bc509d32e3eb5f748665a3d"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b3/linux-x86_64/an/firefox-62.0b3.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b6/linux-x86_64/an/firefox-62.0b6.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha512 = "e932625df7fcdfbd8c30898008ac07aa91c446a3785eb3c7cc0998ed5e52659268bc8b86086968534e8108312dacd53de4d0e5d9cd0bdc2f76edd46c29599bd3"; + sha512 = "f976dd3ec18f06640673d82285855fa0762f5a766613dd36551ce6c95dff3db42bd476a5fe161dcd6329d65bdc67ffa3b20b4237e1287985296deb0fbf0f0c92"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b3/linux-x86_64/ar/firefox-62.0b3.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b6/linux-x86_64/ar/firefox-62.0b6.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha512 = "1873b5a75b3b51e69143f8b85442a995d05a2b753e5ddc06b15224b34d694f8f3ccfba3d15e522e12a265813255023258b791e0a95c680af1d07771aac196ef1"; + sha512 = "5def85c259f86f8db459cdced6d402ae7e496b252d79c9026bbcaca4f59fc82bf16eba9b943d5d60d9a4cbc3b17efb80d160a2ba73c2b8f7efcc65b0e87e5676"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b3/linux-x86_64/as/firefox-62.0b3.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b6/linux-x86_64/as/firefox-62.0b6.tar.bz2"; locale = "as"; arch = "linux-x86_64"; - sha512 = "31b0241902ece8d7364e85a5072f8e4f9ee18fb0b45f3f0d11dff4c25499e6488fa47fbe4eaed6ab16fb63d72fa153e8459ef0e455973d0142e3240ebee35503"; 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+ { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/sr/firefox-61.0.1.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha512 = "356bd43b3971cbb151b7cba8b481830e101cb6627900bde5598a942583ca1f5b5b1c13286710b5525b17fb01252e069e6786067f68a0f009e3396efe683e2cd0"; + sha512 = "8853eceb13dba82f95382592009198eedf465618be213659ecb962fb3590451aed7a45fab05749c77f50ef6b5f188f60d15c92af37e6f3325661de35dfcb2d71"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/sv-SE/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/sv-SE/firefox-61.0.1.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha512 = "f4eaddf14567f1e5a783e8ba7c4898603ded65734bf733c51e5105fae94df567bb4fbb600e103192362fac36e64fc6970cc711b87bd806318ab7926af05c93cb"; + sha512 = "7898426b4152fd469fed37b8e84daf73ac93203ee3d625a3efafbec1e2f910e321300d94329115736e1f800d5c538c7a43046e184b932e05b580238faeb63109"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/ta/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/ta/firefox-61.0.1.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha512 = "7325970571cacfb11cd71d8944399c7b2d56ca5303126442ab8f6477c9cfa808eca7a3573ae11f3ff6993b0e071c5ebc315eb898986a11d53fe1e1508542d906"; + sha512 = "cd6248f8946bec179a192411a0f81b48ead19354cde614f1260420b6134b69eadc23f278489756ce55d3a45b94f0f7b89e4fd5a08708899485170540833634b8"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/te/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/te/firefox-61.0.1.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha512 = "a74bd52ddeb2ecd403a5d415f80cf3b456b71c4fffaa86f72911ad40afe13d9e4a9a723b3f8bbd99e542ea0fd3e5d1e85a5575a74357c4f9b7beca509fc76da9"; + sha512 = "6d6ee190eef46bcf6894a429a589fdf0c336eba5e3b96f28f46d6359562e4c88cbdcb18cfa0053fc5f10e4e7e310e9d7aa3a7ea32d3d6772670221d5e9b28272"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/th/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/th/firefox-61.0.1.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha512 = "6764c0967665bead96ec5d887ad41a8c3e846d39fbff9d49cae6655066e992826adbd20770842a649b360675e2614015275490567aa328b98c63f593281d1899"; + sha512 = "44fcee59ff292ae1015cf305440ec2f7d8fcf7888705732927311bea40d4bd140a6e74f0e0bba3788b3f9ea62f18d3fe2c23e12ddf78eda7df57da914d53dc29"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/tr/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/tr/firefox-61.0.1.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha512 = "11bd142d434008755d047b851014b71d237a1b031e2df99e2c4d9c92b9e126fd268c73f88b94107fcdedbddfa1ec79a05f33f3e05ba7a939e51a9f2275557b56"; + sha512 = "a398769dd7950dabb84638e216b1cce7be94693c29bf2989ed313ca7470f7c5bfd471a3663b08dd0c16b3ac28d5e0b1b42b30b05ab812d16914939bb1ece0b2f"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/uk/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/uk/firefox-61.0.1.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha512 = "4cd391146d3d28a4fb1a44b2c0a12126e1f0211024a93868b87d53a1f2595b781c41bef5ba83784f6b0c23f3549f7e3c2d7c6763f96719000277af0071b6c04e"; + sha512 = "fa3301461971158c7dc6ea683b3ba130be99674762dff62cedc5120d8473cf66ddb08579b3a911946a62ff9d575e6baabb5beae7c458af8a5b5a1028c4abeee3"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/ur/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/ur/firefox-61.0.1.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha512 = "afe67297a149755388a9889addfbf52b0a65c738b02d629c143588bade9944bfde503d3a5e08c44e4de8dd5ee7b42750041603f1f27fdfef037adfd9c6af0c38"; + sha512 = "a8d587b5808ca09907e2d788bf5d85df12663d30dc6d28b0c589c98b4e973eafb5a34e0fa69c5cefec992a50249e1c846f1d858e089f5264e6db14c261b6dcf0"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/uz/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/uz/firefox-61.0.1.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha512 = "193e93702158822127c4cd5baa648d66eabbfc67bd02231c2261e5d0ae2db416576f3ddbac1f395eb880feb07f04360e340d1372fe71d4c3793109017e6c186d"; + sha512 = "b502728c13ac63f4017f2ddf655bb894f9486c8538c75cb4e68de06ff2fa93a2ce0a9f3e36180a28aaa0fe4c23d35a5d734ab26110a1631d8bc5aea00f7eaa14"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/vi/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/vi/firefox-61.0.1.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha512 = "dadc73668a7a810f60d4bc829f7b27a3061a289a0ff9c8692e1626f1d4afac61405ac828132b9cf9318149c342986dada06f9e7dfdcbf84e8408dc2db42c93b1"; + sha512 = "22e87ab09fd252886bf0040b43cd18e8d17666efe86da5fa3d6c981f3d85c1eaecf323a27157599d335ab8d09fdd8afd0a34ba7d2daa6069ef54b778074a98e4"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/xh/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/xh/firefox-61.0.1.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha512 = "7b9c7f218dd31fe680b52d3ebd6740b7473be69a770266bedf663fce8831b270584878037bdccef6b6f536ff35f5eda6c28310966b49c77dd8ce59c02b25031b"; + sha512 = "eb941a2457336c1057103736501d6a0eef688750e7a3ecf672bdc7957fc10ac0e681cbb43d6d88e9025182df1c18bdc2e6ed42332359ad464756f46e69240d75"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/zh-CN/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/zh-CN/firefox-61.0.1.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha512 = "38ce127e44eaf06ecb83e9e8a8c8d5df6ce2add352ab37a70105a91e43cec7e2ed027945313ffc35e9d2704341e452fac060469421b15d692a52553d972d64c1"; + sha512 = "ef196dc65cf7d93986d332795f5bee25b8bfb7322d8def53921bc3456c28ddfe555ad9a15fc7805662564d43f17391482442344502ee71cb30a77add41ef5a11"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/61.0/linux-i686/zh-TW/firefox-61.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/61.0.1/linux-i686/zh-TW/firefox-61.0.1.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha512 = "a324d24f47a6d256474b85a4d11a200e877432b0f2bc423d464e5ff0fb7ddf93ade5c3314c64b58973523debead663ddb202d7b86171594f5f5ebe0bd36b057a"; + sha512 = "7bdebc9f67bf6ed0f5b19d95abb2b3550ff5d8da4d9da3f7764340ded15fb16bccf910bdc56c250db789bed735bada5ac8f4a5f5353174d94dabf984e03f7c23"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index f49bfa963189..bdb9dab4f9d2 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -20,10 +20,10 @@ rec { firefox = common rec { pname = "firefox"; - version = "61.0"; + version = "61.0.1"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "0ww2j5gxr7h142lfi0xvckvd7vmnha72j8c0wyyqmmp1rr341f10vfd0hvawiagik4ih6dz8h5pmkl67zdnwqc3z75vwnci20ajlg2s"; + sha512 = "0alkiz89c42y6677n7csk694g9qsfzm8x928i6007mcdyh8ifkg1604pxwp6irid0w3v8cz7b2153jkk4f0qdx85a2r9csh8hbar583"; }; patches = nixpkgsPatches ++ [ @@ -145,16 +145,16 @@ in rec { tor-browser-7-5 = common (rec { pname = "tor-browser"; - version = "7.5.5"; + version = "7.5.6"; isTorBrowserLike = true; # FIXME: fetchFromGitHub is not ideal, unpacked source is >900Mb src = fetchFromGitHub { owner = "SLNOS"; repo = "tor-browser"; - # branch "tor-browser-52.8.1esr-7.5-1-slnos" - rev = "08e246847f0ccbee42f61d9449344d461c886cf1"; - sha256 = "023k7427g2hqkpdsw1h384djlyy6jyidpssrrwzbs3qv4s13slah"; + # branch "tor-browser-52.9.0esr-7.5-2-slnos" + rev = "95bb92d552876a1f4260edf68fda5faa3eb36ad8"; + sha256 = "1ykn3yg4s36g2cpzxbz7s995c33ij8kgyvghx38z4i8siaqxdddy"; }; patches = nixpkgsPatches; diff --git a/pkgs/applications/networking/browsers/firefox/wrapper.nix b/pkgs/applications/networking/browsers/firefox/wrapper.nix index c2b83a0187f8..62fd4f533ea0 100644 --- a/pkgs/applications/networking/browsers/firefox/wrapper.nix +++ b/pkgs/applications/networking/browsers/firefox/wrapper.nix @@ -60,7 +60,7 @@ let ); nativeMessagingHosts = ([ ] - ++ lib.optional (cfg.enableBrowserpass or false) browserpass + ++ lib.optional (cfg.enableBrowserpass or false) (lib.getBin browserpass) ++ lib.optional (cfg.enableGnomeExtensions or false) chrome-gnome-shell ++ lib.optional (cfg.enableUgetIntegrator or false) uget-integrator ++ lib.optional (cfg.enablePlasmaBrowserIntegration or false) plasma-browser-integration diff --git a/pkgs/applications/networking/browsers/qutebrowser/default.nix b/pkgs/applications/networking/browsers/qutebrowser/default.nix index c2f27a0f7fc3..4e0f362360df 100644 --- a/pkgs/applications/networking/browsers/qutebrowser/default.nix +++ b/pkgs/applications/networking/browsers/qutebrowser/default.nix @@ -12,11 +12,11 @@ assert withMediaPlayback -> gst_all_1 != null; let pdfjs = stdenv.mkDerivation rec { name = "pdfjs-${version}"; - version = "1.7.225"; + version = "1.10.100"; src = fetchzip { - url = "https://github.com/mozilla/pdf.js/releases/download/v${version}/${name}-dist.zip"; - sha256 = "0bsmbz7bbh0zpd70dlhss4fjdw7zq356091wld9s7kxnb2rixqd8"; + url = "https://github.com/mozilla/pdf.js/releases/download/${version}/${name}-dist.zip"; + sha256 = "04df4cf6i6chnggfjn6m1z9vb89f01a0l9fj5rk21yr9iirq9rkq"; stripRoot = false; }; @@ -27,15 +27,13 @@ let }; in python3Packages.buildPythonApplication rec { - name = "qutebrowser-${version}${versionPostfix}"; - namePrefix = ""; - version = "1.3.3"; - versionPostfix = ""; + pname = "qutebrowser"; + version = "1.4.0"; # the release tarballs are different from the git checkout! src = fetchurl { - url = "https://github.com/qutebrowser/qutebrowser/releases/download/v${version}/${name}.tar.gz"; - sha256 = "01lrbkddm4wagx4hq6cz5qwvb8q8nlz0xa35k317gvr3pmnvgjk8"; + url = "https://github.com/qutebrowser/qutebrowser/releases/download/v${version}/${pname}-${version}.tar.gz"; + sha256 = "169xgwizw9kpdg0xll5jrxkb1k107cl4j1zx3jhmpsfbgykcnxpz"; }; # Needs tox diff --git a/pkgs/applications/networking/cluster/minikube/default.nix b/pkgs/applications/networking/cluster/minikube/default.nix index 217998bbf82a..7301e45a41f8 100644 --- a/pkgs/applications/networking/cluster/minikube/default.nix +++ b/pkgs/applications/networking/cluster/minikube/default.nix @@ -14,7 +14,7 @@ let in buildGoPackage rec { pname = "minikube"; name = "${pname}-${version}"; - version = "0.27.0"; + version = "0.28.0"; goPackagePath = "k8s.io/minikube"; @@ -22,7 +22,7 @@ in buildGoPackage rec { owner = "kubernetes"; repo = "minikube"; rev = "v${version}"; - sha256 = "00gj8x5p0vxwy0y0g5nnddmq049h7zxvhb73lb4gii5mghr9mkws"; + sha256 = "1gm61w0f33mdax6im42wckfmjgdr5pziiaw2n7yj6jfjrxjnmzmf"; }; buildInputs = [ go-bindata makeWrapper gpgme ] ++ stdenv.lib.optional hostPlatform.isDarwin vmnet; diff --git a/pkgs/applications/networking/cluster/terraform/providers/data.nix b/pkgs/applications/networking/cluster/terraform/providers/data.nix index 7aed4b95dd45..554c56fdae66 100644 --- a/pkgs/applications/networking/cluster/terraform/providers/data.nix +++ b/pkgs/applications/networking/cluster/terraform/providers/data.nix @@ -4,8 +4,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-alicloud"; - version = "1.9.1"; - sha256 = "11rsvzyc74v14n7g0z1mwyykaz7m6bmvi38jx711b6vpxvm2scva"; + version = "1.9.5"; + sha256 = "12yhy0p4xciw70i0gvwzbg39f6mfin2cfdblxyqjlv9bwg26k7jz"; }; archive = { @@ -32,8 +32,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-aws"; - version = "1.16.0"; - sha256 = "0knivwxdjkxyaqka0vvn0lh2ndbg660dw2g03iw00fx6ska1zn0c"; + version = "1.25.0"; + sha256 = "1cg2pch6nip96qdzca7q0ak6308fkjxz9zjdcv74cwg0f65frh7d"; }; azure-classic = { @@ -46,8 +46,15 @@ { owner = "terraform-providers"; repo = "terraform-provider-azurerm"; - version = "1.4.0"; - sha256 = "0g1i1aasi44zn5bdivzqkk1kshq271x2lydjskyqq7jfx27myibb"; + version = "1.7.0"; + sha256 = "0lf83pc5gdmd61i93221zdg9pdzfpfnvhis8kf1s2jlc6zshbabv"; + }; + azurestack = + { + owner = "terraform-providers"; + repo = "terraform-provider-azurestack"; + version = "0.1.0"; + sha256 = "144dfaq16g41i9y2pcq2ilgygndad3vivr6fbygg8yl10m5l4qp0"; }; bitbucket = { @@ -109,8 +116,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-consul"; - version = "1.0.0"; - sha256 = "1008lrvdqn3kk8gwvq094nwknh00b429jmwi0hq4brick7vyvbvz"; + version = "2.1.0"; + sha256 = "1qm29vj8ms37zb4b3bhdv4b4vrl0am134zmc654lb2g582cnj9yw"; }; datadog = { @@ -137,8 +144,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-dns"; - version = "1.0.0"; - sha256 = "05ismwpmpkv9qxn6g5i29y18s1pw4yf2pyvv9ak8hj8idh4z6gz2"; + version = "2.0.0"; + sha256 = "1km0pq1wp0bdccb612z9n0kj9w7hn1yvhk7xszwp2mzs8qmd7flv"; }; dnsimple = { @@ -172,15 +179,22 @@ { owner = "terraform-providers"; repo = "terraform-provider-fastly"; - version = "0.1.4"; - sha256 = "0x8s11c30k9a95mafyb2zl3wh9hgbdm7jgajzy5y4xnnr96ca13k"; + version = "0.2.0"; + sha256 = "0vrvyqhzbrvhyhdkg2y2dgadf5j7bj0cbzd13f9m86d146zlf8lb"; + }; + flexibleengine = + { + owner = "terraform-providers"; + repo = "terraform-provider-flexibleengine"; + version = "1.0.1"; + sha256 = "1xf5cmn434a0zr9qxc7f0jma9gf111cp7fm2vgyhkd62hipafcas"; }; github = { owner = "terraform-providers"; repo = "terraform-provider-github"; - version = "1.0.0"; - sha256 = "0nca90s4bangraly1pcn3jfkfksaw0g2chs5ba6m7z6bhkrj2ylb"; + version = "1.1.0"; + sha256 = "1f0yg2qpr9ffimscy17csh20cq9czkcs96ac79s3kl56f8c95ijm"; }; gitlab = { @@ -193,8 +207,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-google"; - version = "1.10.0"; - sha256 = "08ayi30aqw9lz8qn982vl9m3z4prah60fqq2q9hvscf6qb9g8lr0"; + version = "1.15.0"; + sha256 = "0xwijnv7mzlyzplkylfphph568b9bxavrclnlwvp9ylvklq70nzl"; }; grafana = { @@ -203,12 +217,19 @@ version = "1.0.2"; sha256 = "17pj4mm7ik9llhgckza822866x6986cdcr821f16dchvn3bfbf2i"; }; + hcloud = + { + owner = "terraform-providers"; + repo = "terraform-provider-hcloud"; + version = "1.2.0"; + sha256 = "17zrdzvb9hp02710khvh9pwkavp79zy3y2qzaydgmnrbkks4s8cg"; + }; heroku = { owner = "terraform-providers"; repo = "terraform-provider-heroku"; - version = "0.1.2"; - sha256 = "0dmq5v4bwzndy6l6vx29m5ykn2zhnnbmnla00ad8i7djm1sj1fbg"; + version = "1.0.1"; + sha256 = "1kx74d0ywzim5zj3y5ac80r18igsqax39yv9qaam546a88ya31yy"; }; http = { @@ -228,8 +249,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-ignition"; - version = "1.0.0"; - sha256 = "0hr2zshrx4qfb7xdknsxsa4522kkf84rsqqbliz7ac9nsqpaarf4"; + version = "1.0.1"; + sha256 = "1j9rgwrb4bnm8a44rg3d9fry46wlpfkwxxpkpw9y6l24php0qxh8"; }; influxdb = { @@ -270,8 +291,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-logicmonitor"; - version = "1.1.0"; - sha256 = "16blwfbvx80j5s6809wrlfnkq0qvjasz0zi4ykwzvkqxh00igj7r"; + version = "1.2.0"; + sha256 = "1zir35i8j5w7ra4i7f9k0ghac9b3bar0dy16sqy1kqwbh4ikmhb8"; }; mailgun = { @@ -291,8 +312,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-newrelic"; - version = "1.0.0"; - sha256 = "1bcxq4f50qci54gckx4yax2v2qpazp10n5vcci4cba0bf5l8zx62"; + version = "1.0.1"; + sha256 = "0g4fd2rvx90f2bmjl6jjdvrsx7ayhf30vj9y3mklhxgsd9x83wpq"; }; nomad = { @@ -326,29 +347,29 @@ { owner = "terraform-providers"; repo = "terraform-provider-oneandone"; - version = "1.0.0"; - sha256 = "0q14r36iyn1c1wfky42imkzvkys5znj1yzq27iaxnrsqp4hh7pl2"; + version = "1.1.0"; + sha256 = "1yps2mcdy61afxva7vg0i82s24zkdrn5abwblm0gcgc0cz588r9d"; }; opc = { owner = "terraform-providers"; repo = "terraform-provider-opc"; - version = "1.1.0"; - sha256 = "19yip5v00b57j3h7870hw51nsxcwib7mlhdzzn276z74af6zirsr"; + version = "1.1.2"; + sha256 = "0v413wgnr8h682han88s0n15cdwd9a0dxr9s2mknpi4664c41qlk"; }; openstack = { owner = "terraform-providers"; repo = "terraform-provider-openstack"; - version = "1.3.0"; - sha256 = "0pyp95i6z6il2kl28cvilqi81wqs076d6f0zacjyvmn1d0blqrnx"; + version = "1.6.0"; + sha256 = "14chn2vb8y9rz5irh8m2ky9yxmw2za45gikncjm4gfc3xl6803iq"; }; opentelekomcloud = { owner = "terraform-providers"; repo = "terraform-provider-opentelekomcloud"; - version = "1.0.0"; - sha256 = "1wra9a6cjgsyvbfldvi2xnjk6y9zqv3y06pbq8c8dyjzssd5j591"; + version = "1.1.0"; + sha256 = "04pcgygcz2ld5hp7f29j2z3d4ypy4fm4m1zbbs9l9gc3fya88iny"; }; opsgenie = { @@ -361,8 +382,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-oraclepaas"; - version = "1.0.0"; - sha256 = "1h66ijnq172zk0bkv68iq0sy5l6jlasa2pi9q8fq54ib9sxnfkk2"; + version = "1.2.1"; + sha256 = "0r404rysjhbsxh45ad23k12rs8js2pdczakzavnjx508kr29gcqc"; }; ovh = { @@ -375,22 +396,22 @@ { owner = "terraform-providers"; repo = "terraform-provider-packet"; - version = "1.2.3"; - sha256 = "0vx2pvrxgpy137v3i563w0sdqqrqp6p6sls27fg76cfxrqik5dpk"; + version = "1.2.4"; + sha256 = "11ga29d5bzmn6rzlb6sb28nh1zbbwglinzn185pysqx6n21l6wva"; }; pagerduty = { owner = "terraform-providers"; repo = "terraform-provider-pagerduty"; - version = "1.1.0"; - sha256 = "100zxmpgd5qbzivkc2ja75980yrlz0k50x7448wf1kp2inyylxq0"; + version = "1.1.1"; + sha256 = "1dpl6cnii9kzx9lr1f9vndh7w6mfg5kv6az7dq49lhi16sxwwb6a"; }; panos = { owner = "terraform-providers"; repo = "terraform-provider-panos"; - version = "1.1.0"; - sha256 = "1j3j0bdblw54g2l4xdwm9604n3qfb6zb4b8p081hs5nv004awka4"; + version = "1.3.0"; + sha256 = "1isnhaszld96zpkcbwkf70nhhwmsl2z3s9868cjsac44b27gsvrq"; }; postgresql = { @@ -410,29 +431,29 @@ { owner = "terraform-providers"; repo = "terraform-provider-profitbricks"; - version = "1.1.1"; - sha256 = "0sn48adgpjw20a6jwagarnh5jasq0v36zsbd204j0vx4iam3vm9m"; + version = "1.3.1"; + sha256 = "1g4filwv38rq9wcdbpnpgfnv8qj1kzdnjc8awvbsdlxlj4fa06bi"; }; rabbitmq = { owner = "terraform-providers"; repo = "terraform-provider-rabbitmq"; - version = "0.2.0"; - sha256 = "1pbib43d1iqy8xl03zqwnz77362cb9cq8awcpid714n1sz7nd4im"; + version = "1.0.0"; + sha256 = "1md928243r4c46ihjnavz2375nxnfyhknyc86r9853hwhhyhsx5d"; }; rancher = { owner = "terraform-providers"; repo = "terraform-provider-rancher"; - version = "1.2.0"; - sha256 = "0xxff4mh4cv27mignvanhsz5sf5476ljk7q4h67fy4y0gzyxwpzw"; + version = "1.2.1"; + sha256 = "1z0gqchb268w5mw0519fbx4126nkxb9kvvay8vjj287yxdpi5grj"; }; random = { owner = "terraform-providers"; repo = "terraform-provider-random"; - version = "1.2.0"; - sha256 = "00gzqav21h2x2spczwcddlwl0llhgy03djvjjq9g9wb5yvcf4yll"; + version = "1.3.1"; + sha256 = "0zcvw0vz7mxx46m2jamhmkl7l0k8v0q5fha5z6cra3y2ikhqrnfl"; }; rundeck = { @@ -441,12 +462,19 @@ version = "0.1.0"; sha256 = "0rp8cgnp8in52g7zkl2lj42hns0g27m8f7l42lhfnv6n2vv5qxcg"; }; + runscope = + { + owner = "terraform-providers"; + repo = "terraform-provider-runscope"; + version = "0.1.0"; + sha256 = "05l305423njds2cmmxg67swpdnp3zibs36dq4cfjk47i4byvipjz"; + }; scaleway = { owner = "terraform-providers"; repo = "terraform-provider-scaleway"; - version = "1.3.0"; - sha256 = "1yd2xdr52z0f3ykfhsfgf57zzhjglci8mvbimdf6z8xmdgfhwjbf"; + version = "1.4.1"; + sha256 = "1zxb3981w30hv1aax28ayiy0sl0vzrrwkynp4lmwwhfjyhyagnm1"; }; softlayer = { @@ -459,8 +487,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-spotinst"; - version = "0.1.0"; - sha256 = "04sxdbx6qjxixrv9shnp8fxkss6pylqmphlm1l4q5c83dwk96pka"; + version = "1.0.0"; + sha256 = "1p05wamv70mywfqf0b3nxpvxc0m8ydb5zcl2kpzsrii9mq21pjrf"; }; statuscake = { @@ -494,8 +522,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-triton"; - version = "0.5.0"; - sha256 = "1cbv4bliswiwbhr9bh2m4faazhj0v89jnwn0fndfjw3rka1b97h7"; + version = "0.5.1"; + sha256 = "1bn5x6nmhfkrzpxhyfclls85l9qqffvzx1xsgcb3368lhwzarn2f"; }; ultradns = { @@ -522,7 +550,7 @@ { owner = "terraform-providers"; repo = "terraform-provider-vsphere"; - version = "1.4.1"; - sha256 = "16dgszmcsfzbflqg053av1v8wgwy8m6f2qlk55fg3ww1a59c0wy1"; + version = "1.6.0"; + sha256 = "1xav341bal7lyb206zw2nzgzjvwkda54cgksza44q3jhqznxma47"; }; } diff --git a/pkgs/applications/networking/cluster/terraform/providers/update-all b/pkgs/applications/networking/cluster/terraform/providers/update-all index 24695066fa28..e7ded437edb7 100755 --- a/pkgs/applications/networking/cluster/terraform/providers/update-all +++ b/pkgs/applications/networking/cluster/terraform/providers/update-all @@ -71,7 +71,7 @@ fi org=terraform-providers -repos=$(get_org_repos "$org" | grep terraform-provider- | grep -v terraform-provider-scaffolding | sort) +repos=$(get_org_repos "$org" | grep terraform-provider- | grep -v terraform-provider-scaffolding | grep -v terraform-provider-telefonicaopencloud | sort) # Get all the providers with index diff --git a/pkgs/applications/networking/flexget/default.nix b/pkgs/applications/networking/flexget/default.nix index 9a71f8911c25..cc89f09d6402 100644 --- a/pkgs/applications/networking/flexget/default.nix +++ b/pkgs/applications/networking/flexget/default.nix @@ -60,6 +60,7 @@ buildPythonApplication rec { idna itsdangerous markupsafe plumbum pytz six tzlocal urllib3 webencodings werkzeug zxcvbn-python + backports_functools_lru_cache ] ++ lib.optional (pythonOlder "3.4") pathlib ++ lib.optional delugeSupport deluge; diff --git a/pkgs/applications/networking/instant-messengers/baresip/default.nix b/pkgs/applications/networking/instant-messengers/baresip/default.nix index eff33643ebcf..b7570e85217c 100644 --- a/pkgs/applications/networking/instant-messengers/baresip/default.nix +++ b/pkgs/applications/networking/instant-messengers/baresip/default.nix @@ -3,11 +3,11 @@ , gsm, speex, portaudio, spandsp, libuuid, ccache, libvpx }: stdenv.mkDerivation rec { - version = "0.5.9"; + version = "0.5.10"; name = "baresip-${version}"; src=fetchurl { url = "http://www.creytiv.com/pub/baresip-${version}.tar.gz"; - sha256 = "02bf4fwirf3b7h3cr1jqm0xsjzza4fi9kg88424js2l0xywwzpgf"; + sha256 = "1yx721qnyhgk2lna1p6iwndl767cy0ss5zcwhyjccgqd848b0grr"; }; nativeBuildInputs = [ pkgconfig ]; buildInputs = [zlib openssl libre librem cairo mpg123 diff --git a/pkgs/applications/networking/instant-messengers/hipchat/default.nix b/pkgs/applications/networking/instant-messengers/hipchat/default.nix index dd1ce2264d5f..ac00fb7bbd35 100644 --- a/pkgs/applications/networking/instant-messengers/hipchat/default.nix +++ b/pkgs/applications/networking/instant-messengers/hipchat/default.nix @@ -3,8 +3,7 @@ , libGL, xcbutilkeysyms, xdg_utils, libtool }: let - - version = "4.30.4.1672"; + version = "4.30.5.1676"; rpath = stdenv.lib.makeLibraryPath [ xdg_utils @@ -39,22 +38,13 @@ let systemd libGL ] + ":${stdenv.cc.cc.lib}/lib64"; - - src = - if stdenv.system == "x86_64-linux" then - fetchurl { - url = "https://atlassian.artifactoryonline.com/atlassian/hipchat-apt-client/pool/HipChat4-${version}-Linux.deb"; - sha256 = "1xrwndhbyhcmjcg8h1ib8lp1g51f7jxdhc6p7776zmhlfw94n3rx"; - } - else - throw "HipChat is not supported on ${stdenv.system}"; - -in - -stdenv.mkDerivation { +in stdenv.mkDerivation { name = "hipchat-${version}"; - inherit src; + src = fetchurl { + url = "https://atlassian.artifactoryonline.com/atlassian/hipchat-apt-client/pool/HipChat4-${version}-Linux.deb"; + sha256 = "1fmvarq7zf1cnah2d1l7rxhbiw3dmjcxsldys5is63y204hdh04y"; + }; buildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/networking/instant-messengers/mattermost-desktop/default.nix b/pkgs/applications/networking/instant-messengers/mattermost-desktop/default.nix index b65995ff86a4..60e883e8b9d1 100644 --- a/pkgs/applications/networking/instant-messengers/mattermost-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/mattermost-desktop/default.nix @@ -1,7 +1,7 @@ -{ stdenv, lib, fetchurl, gnome2, atk, cairo, gdk_pixbuf, glib, freetype, -fontconfig, dbus, libX11, xorg, libXi, libXcursor, libXdamage, libXrandr, -libXcomposite, libXext, libXfixes, libXrender, libXtst, libXScrnSaver, nss, -nspr, alsaLib, cups, expat, udev }: +{ stdenv, lib, fetchurl, gnome3, gtk2, pango, atk, cairo, gdk_pixbuf, glib, +freetype, fontconfig, dbus, libX11, xorg, libXi, libXcursor, libXdamage, +libXrandr, libXcomposite, libXext, libXfixes, libXrender, libXtst, +libXScrnSaver, nss, nspr, alsaLib, cups, expat, udev }: let rpath = lib.makeLibraryPath [ alsaLib @@ -14,9 +14,9 @@ let freetype gdk_pixbuf glib - gnome2.GConf - gnome2.gtk - gnome2.pango + gnome3.gconf + gtk2 + pango libX11 libXScrnSaver libXcomposite @@ -38,18 +38,18 @@ let in stdenv.mkDerivation rec { name = "mattermost-desktop-${version}"; - version = "4.1.1"; + version = "4.1.2"; src = if stdenv.system == "x86_64-linux" then fetchurl { url = "https://releases.mattermost.com/desktop/${version}/${name}-linux-x64.tar.gz"; - sha256 = "0kq89xylfv2rfmd4wj08d02gjzywlq1p8xmk313i58334xm7srja"; + sha256 = "16dn6870bs1nfl2082ym9gwvmqb3i5sli48qprap80p7riph6k9s"; } else if stdenv.system == "i686-linux" then fetchurl { url = "https://releases.mattermost.com/desktop/${version}/${name}-linux-ia32.tar.gz"; - sha256 = "1jiknxpb44bhxrl0xa57kf3wxlzifbpnn3vblp8l4pr2wx146pzx"; + sha256 = "145zb1l37fa2slfrrlprlwzcc5km3plxs374yhgix25mlg2afkqr"; } else throw "Mattermost-Desktop is not currently supported on ${stdenv.system}"; diff --git a/pkgs/applications/networking/instant-messengers/riot/riot-web.nix b/pkgs/applications/networking/instant-messengers/riot/riot-web.nix index 9111fa59c293..279f347ccbbb 100644 --- a/pkgs/applications/networking/instant-messengers/riot/riot-web.nix +++ b/pkgs/applications/networking/instant-messengers/riot/riot-web.nix @@ -3,11 +3,11 @@ let configFile = writeText "riot-config.json" conf; in stdenv.mkDerivation rec { name= "riot-web-${version}"; - version = "0.15.5"; + version = "0.15.6"; src = fetchurl { url = "https://github.com/vector-im/riot-web/releases/download/v${version}/riot-v${version}.tar.gz"; - sha256 = "04sij99njkiiwc1q23gwa8z6h4z0riw6yb9z3ds7v2qiyi4sshdz"; + sha256 = "032svv30dhj9gl0v37djn9bnwh7f9bfg2czhmcszdygsd0879x08"; }; installPhase = '' diff --git a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix index 87dddff4bd05..4e26d7683e69 100644 --- a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix @@ -39,7 +39,7 @@ let xorg.libxcb ]; - version = "3.0.2816"; + version = "3.2.2840"; plat = { "i686-linux" = "i386"; @@ -47,8 +47,8 @@ let }.${stdenv.system}; sha256 = { - "i686-linux" = "1ds807j1b8dk9hrnzbg4g9mvn44abw24pxrqns9ai62mh3hvi65p"; - "x86_64-linux" = "13pyyp2c8q0v0ni2hzh2jnbd3i96q68314glbmy4kyh7vm9427lc"; + "i686-linux" = "071ddh2d8wmiybwafwyb97962zj358l0fq7g2r44231653sgybvq"; + "x86_64-linux" = "0qp9ms94smnm7k47b0n0jdzvnm1b7gj25hyinsfc6lghrb6jqw3r"; }.${stdenv.system}; in diff --git a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix index 2f08e8af6c90..98beced062a4 100644 --- a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix +++ b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix @@ -1,16 +1,22 @@ { stdenv, fetchurl, system, makeWrapper, makeDesktopItem, autoPatchelfHook -, dbus, glib, libGL, libX11, libXfixes, libuuid, libxcb, procps -, qtbase, qtdeclarative, qtlocation, qtquickcontrols2, qtscript -, qtwebchannel, qtwebengine +# Dynamic libraries +, dbus, glib, libGL, libX11, libXfixes, libuuid, libxcb, qtbase, qtdeclarative +, qtlocation, qtquickcontrols2, qtscript, qtwebchannel, qtwebengine +# Runtime +, libjpeg_turbo, pciutils, procps +, pulseaudioSupport ? true, libpulseaudio ? null }: +assert pulseaudioSupport -> libpulseaudio != null; + let + inherit (stdenv.lib) concatStringsSep makeBinPath optional optionalString; - version = "2.2.128100.0627"; + version = "2.2.128200.0702"; srcs = { x86_64-linux = fetchurl { url = "https://zoom.us/client/${version}/zoom_x86_64.tar.xz"; - sha256 = "1x98zhs75c22x58zj4vzk8gb9yr7a9hfkbiqhjp5jrvccgz6ncin"; + sha256 = "0n9kyj94bj35gbpwiz4kq7hc8pwfqwnfqf003g4c8gx5pda3g56w"; }; }; @@ -24,11 +30,17 @@ in stdenv.mkDerivation { buildInputs = [ dbus glib libGL libX11 libXfixes libuuid libxcb qtbase qtdeclarative qtlocation qtquickcontrols2 qtscript qtwebchannel qtwebengine + libjpeg_turbo pciutils procps ]; + runtimeDependencies = optional pulseaudioSupport libpulseaudio; + + # Don't remove runtimeDependencies from RPATH via patchelf --shrink-rpath + dontPatchELF = true; + installPhase = let - files = stdenv.lib.concatStringsSep " " [ + files = concatStringsSep " " [ "*.pcm" "*.png" "ZXMPPROOT.cer" @@ -52,8 +64,13 @@ in stdenv.mkDerivation { cp -ar ${files} $packagePath + # TODO Patch this somehow; tries to dlopen './libturbojpeg.so' from cwd + ln -s $(readlink -e "${libjpeg_turbo.out}/lib/libturbojpeg.so") $packagePath/libturbojpeg.so + makeWrapper $packagePath/zoom $out/bin/zoom-us \ - --prefix PATH : "${procps}/bin" + --prefix PATH : "${makeBinPath [ pciutils procps ]}" \ + --set QSG_INFO 1 \ + --run "cd $packagePath" runHook postInstall ''; diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix index 56b9e5cfb04b..05c372d0780e 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix @@ -1,595 +1,595 @@ { - version = "52.8.0"; + version = "52.9.0"; sources = [ - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.8.0/linux-x86_64/ar/thunderbird-52.8.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-x86_64/ar/thunderbird-52.9.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha512 = "7ba3e6d4a64ce91b16d79607c3530deba2d68b09c81f7509991c62a11736ee51278b3cd60ca8063ce94748bf0b483cd9d9ea3be4ba84b24bef56194053502550"; + sha512 = "4585aabb08aaf049622f7cc8b485fb6a28ffd26759c760dab75af679a434d3ea7f356e5255a990f22f362e1506722207c2c2b866718a695dd651a53923a37fb2"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.8.0/linux-x86_64/ast/thunderbird-52.8.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.9.0/linux-x86_64/ast/thunderbird-52.9.0.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha512 = "192442636ec56f7751d752572122c8b435fb28d6801a398dc6d02896d1f99d51feebbdb906f3911da08bb9da2851d3ea29eb064949d53436a6764292a6aeee7e"; + sha512 = "f8558b2b833be94accd96ccd62b9b1fd8f837d11f9f53a514bf19b2007af4c69afac762f091c4116ec4b7ceadc3538183c2370b4b485a430d3b975aa94de0027"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/52.8.0/linux-x86_64/be/thunderbird-52.8.0.tar.bz2"; 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} ]; } diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix index 15d2c58e816c..43684c897302 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix @@ -22,11 +22,11 @@ let wrapperTool = if enableGTK3 then wrapGAppsHook else makeWrapper; in stdenv.mkDerivation rec { name = "thunderbird-${version}"; - version = "52.8.0"; + version = "52.9.0"; src = fetchurl { url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz"; - sha512 = "ce44f32f44244560499c44dbe963a8296cf58cf33e3f26d07be455746ed7f77791084e41bc66b2c90fe46e97fa15ae2041b1f5fcfa94d15b45c4f90172230d03"; + sha512 = "30jv4r8yh270dynqiwlc0yf52f6bka366l48rsppz5nqdb9jvxz04vghhcrp832wrmhd9z6r4b09yb1syhg7n3sl7zsjj2gq1yblhi1"; }; # New sed no longer tolerates this mistake. diff --git a/pkgs/applications/networking/newsreaders/quiterss/0001-Revert-change-WebKit-602.1-c2f.patch b/pkgs/applications/networking/newsreaders/quiterss/0001-Revert-change-WebKit-602.1-c2f.patch deleted file mode 100644 index d9b994d9b37c..000000000000 --- a/pkgs/applications/networking/newsreaders/quiterss/0001-Revert-change-WebKit-602.1-c2f.patch +++ /dev/null @@ -1,157 +0,0 @@ -Date: Wed, 6 Jun 2018 20:46:38 +0200 - -This reverts commit eceda92a16f1f4e5c5b584acd745398571df2bd6. ---- - src/application/mainapplication.cpp | 3 --- - src/application/mainwindow.cpp | 11 ----------- - src/application/mainwindow.h | 2 -- - src/newstabwidget.cpp | 6 +----- - src/newstabwidget.h | 2 +- - src/optionsdialog.cpp | 2 -- - src/webview/webpage.cpp | 13 +------------ - src/webview/webpage.h | 3 --- - 8 files changed, 3 insertions(+), 39 deletions(-) - -diff --git a/src/application/mainapplication.cpp b/src/application/mainapplication.cpp -index e93ec9c1..a5913bdf 100644 ---- a/src/application/mainapplication.cpp -+++ b/src/application/mainapplication.cpp -@@ -566,9 +566,6 @@ void MainApplication::c2fLoadSettings() - settings.beginGroup("ClickToFlash"); - c2fWhitelist_ = settings.value("whitelist", QStringList()).toStringList(); - c2fEnabled_ = settings.value("enabled", true).toBool(); --#if QT_VERSION >= 0x050900 -- c2fEnabled_ = false; --#endif - settings.endGroup(); - } - -diff --git a/src/application/mainwindow.cpp b/src/application/mainwindow.cpp -index 337a7c4e..42255d2c 100644 ---- a/src/application/mainwindow.cpp -+++ b/src/application/mainwindow.cpp -@@ -8140,14 +8140,3 @@ void MainWindow::createBackup() - QFile::copy(settings.fileName(), backupFileName); - } - } -- --void MainWindow::webViewFullScreen(bool on) --{ -- setFullScreen(); -- feedsWidget_->setVisible(!on); -- pushButtonNull_->setVisible(!on); -- tabBarWidget_->setVisible(!on); -- currentNewsTab->newsWidget_->setVisible(!on); -- pushButtonNull_->setVisible(!on); -- statusBar()->setVisible(!on); --} -diff --git a/src/application/mainwindow.h b/src/application/mainwindow.h -index 995f96dc..93b75c11 100644 ---- a/src/application/mainwindow.h -+++ b/src/application/mainwindow.h -@@ -271,8 +271,6 @@ public: - - AdBlockIcon *adBlockIcon() { return adblockIcon_; } - -- void webViewFullScreen(bool on); -- - public slots: - void restoreFeedsOnStartUp(); - void addFeed(); -diff --git a/src/newstabwidget.cpp b/src/newstabwidget.cpp -index 77d74d3b..c6c130f7 100644 ---- a/src/newstabwidget.cpp -+++ b/src/newstabwidget.cpp -@@ -1842,12 +1842,8 @@ void NewsTabWidget::loadNewspaper(int refresh) - *----------------------------------------------------------------------------*/ - void NewsTabWidget::slotSetHtmlWebView(const QString &html, const QUrl &baseUrl) - { -- QUrl url = baseUrl; --#if QT_VERSION >= 0x050900 -- url.setScheme(""); --#endif - webView_->history()->setMaximumItemCount(0); -- webView_->setHtml(html, url); -+ webView_->setHtml(html, baseUrl); - webView_->history()->setMaximumItemCount(100); - } - -diff --git a/src/newstabwidget.h b/src/newstabwidget.h -index 7f5c3957..8d1266ac 100644 ---- a/src/newstabwidget.h -+++ b/src/newstabwidget.h -@@ -127,7 +127,6 @@ public: - QToolBar *newsToolBar_; - QSplitter *newsTabWidgetSplitter_; - -- QWidget *newsWidget_; - WebView *webView_; - QToolBar *webToolBar_; - LocationBar *locationBar_; -@@ -199,6 +198,7 @@ private: - - MainWindow *mainWindow_; - QSqlDatabase db_; -+ QWidget *newsWidget_; - - FeedsModel *feedsModel_; - FeedsProxyModel *feedsProxyModel_; -diff --git a/src/optionsdialog.cpp b/src/optionsdialog.cpp -index 73136dec..c082bc30 100644 ---- a/src/optionsdialog.cpp -+++ b/src/optionsdialog.cpp -@@ -741,9 +741,7 @@ void OptionsDialog::createBrowserWidget() - browserWidget_ = new QTabWidget(); - browserWidget_->addTab(generalBrowserWidget, tr("General")); - browserWidget_->addTab(historyBrowserWidget_, tr("History")); --#if QT_VERSION < 0x050900 - browserWidget_->addTab(click2FlashWidget_, tr("Click to Flash")); --#endif - browserWidget_->addTab(downloadsWidget, tr("Downloads")); - } - -diff --git a/src/webview/webpage.cpp b/src/webview/webpage.cpp -index 6401ec87..0254a167 100644 ---- a/src/webview/webpage.cpp -+++ b/src/webview/webpage.cpp -@@ -51,10 +51,7 @@ WebPage::WebPage(QObject *parent) - this, SLOT(downloadRequested(QNetworkRequest))); - connect(this, SIGNAL(printRequested(QWebFrame*)), - mainApp->mainWindow(), SLOT(slotPrint(QWebFrame*))); --#if QT_VERSION >= 0x050900 -- connect(this, SIGNAL(fullScreenRequested(QWebFullScreenRequest)), -- this, SLOT(slotFullScreenRequested(QWebFullScreenRequest))); --#endif -+ - livingPages_.append(this); - } - -@@ -286,11 +283,3 @@ void WebPage::cleanBlockedObjects() - mainFrame()->scrollToAnchor(mainFrame()->url().fragment()); - } - } -- --#if QT_VERSION >= 0x050900 --void WebPage::slotFullScreenRequested(QWebFullScreenRequest fullScreenRequest) --{ -- fullScreenRequest.accept(); -- mainApp->mainWindow()->webViewFullScreen(fullScreenRequest.toggleOn()); --} --#endif -diff --git a/src/webview/webpage.h b/src/webview/webpage.h -index 5c376c50..91e72758 100644 ---- a/src/webview/webpage.h -+++ b/src/webview/webpage.h -@@ -68,9 +68,6 @@ private slots: - void downloadRequested(const QNetworkRequest &request); - void cleanBlockedObjects(); - void urlChanged(const QUrl &url); --#if QT_VERSION >= 0x050900 -- void slotFullScreenRequested(QWebFullScreenRequest fullScreenRequest); --#endif - - private: - NetworkManagerProxy *networkManagerProxy_; --- -2.16.2 - diff --git a/pkgs/applications/networking/newsreaders/quiterss/default.nix b/pkgs/applications/networking/newsreaders/quiterss/default.nix index 6bd42183d038..6df0817070c2 100644 --- a/pkgs/applications/networking/newsreaders/quiterss/default.nix +++ b/pkgs/applications/networking/newsreaders/quiterss/default.nix @@ -4,20 +4,15 @@ stdenv.mkDerivation rec { name = "quiterss-${version}"; - version = "0.18.11"; + version = "0.18.12"; src = fetchFromGitHub { owner = "QuiteRSS"; repo = "quiterss"; rev = "${version}"; - sha256 = "0n9byhibi2qpgrb7x08knvqnmyn5c7vm24cl6y3zcvz52pz8y2yc"; + sha256 = "0xav9qr8n6310636nfbgx4iix65fs3ya5rz2isxsf38bkjm7r3pa"; }; - # Revert this commit until qt5.qtwebkit (currently an older version) from - # nixpkgs supports it (the commit states WebKit 602.1 while the current - # version in nixos-unstable is 538.1) - patches = [ ./0001-Revert-change-WebKit-602.1-c2f.patch ]; - nativeBuildInputs = [ qmake pkgconfig ]; buildInputs = [ qtbase qttools qtwebkit sqlite.dev ]; diff --git a/pkgs/applications/networking/remote/xrdp/default.nix b/pkgs/applications/networking/remote/xrdp/default.nix index ed1abfcba99d..3061467c82bd 100644 --- a/pkgs/applications/networking/remote/xrdp/default.nix +++ b/pkgs/applications/networking/remote/xrdp/default.nix @@ -3,13 +3,13 @@ let xorgxrdp = stdenv.mkDerivation rec { name = "xorgxrdp-${version}"; - version = "0.2.5"; + version = "0.2.7"; src = fetchFromGitHub { owner = "neutrinolabs"; repo = "xorgxrdp"; rev = "v${version}"; - sha256 = "05ix0bvbgpg0l0f6pyxp64a4785yv16dxf522y7k84b0rag4bxr7"; + sha256 = "15idwgcjgwa9in8y1bblpj67y7w0bfngc2sa0hd9hn0dinrlifrk"; }; nativeBuildInputs = [ pkgconfig autoconf automake which libtool nasm ]; @@ -34,7 +34,7 @@ let }; xrdp = stdenv.mkDerivation rec { - version = "0.9.5"; + version = "0.9.7"; name = "xrdp-${version}"; src = fetchFromGitHub { @@ -42,7 +42,7 @@ let repo = "xrdp"; rev = "refs/heads/runtime-cfg-path-${version}"; # Fixes https://github.com/neutrinolabs/xrdp/issues/609; not a patch on top of the official repo because "xorgxrdp.configureFlags" above includes "xrdp.src" which must be patched already fetchSubmodules = true; - sha256 = "1sm994dic72zvxgwxw9z6an6050976nlnnn2my42pnzj9l5842d8"; + sha256 = "1dw2zl9zh6win1q0kxj08n9fawpcrs1krjh5978wp0jmq8sdbn7k"; }; nativeBuildInputs = [ pkgconfig autoconf automake which libtool nasm ]; diff --git a/pkgs/applications/networking/seafile-client/default.nix b/pkgs/applications/networking/seafile-client/default.nix index 279dc508225b..c9d2a111753d 100644 --- a/pkgs/applications/networking/seafile-client/default.nix +++ b/pkgs/applications/networking/seafile-client/default.nix @@ -5,14 +5,14 @@ with stdenv.lib; stdenv.mkDerivation rec { - version = "6.1.8"; + version = "6.2.1"; name = "seafile-client-${version}"; src = fetchFromGitHub { owner = "haiwen"; repo = "seafile-client"; rev = "v${version}"; - sha256 = "0gy7jfxr5f8qvbqj80g7fzaw9b3vax750c4z5cr7f43rv99284pc"; + sha256 = "02nzihs720pmgr5139s7fz88f7gm19dn1x2kqdpi81k7gdwqq0bp"; }; nativeBuildInputs = [ pkgconfig cmake makeWrapper ]; diff --git a/pkgs/applications/networking/ssb/patchwork-classic/default.nix b/pkgs/applications/networking/ssb/patchwork-classic/default.nix index 361aac4f122c..1f8d0cba6d05 100644 --- a/pkgs/applications/networking/ssb/patchwork-classic/default.nix +++ b/pkgs/applications/networking/ssb/patchwork-classic/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { version = "2.12.0"; - name = "patchwork-clasic-${version}"; + name = "patchwork-classic-${version}"; src = fetchurl { url = "https://github.com/ssbc/patchwork-classic-electron/releases/download/v2.12.0/ssb-patchwork-electron_2.12.0_linux-amd64.deb"; diff --git a/pkgs/applications/office/grisbi/default.nix b/pkgs/applications/office/grisbi/default.nix index 62dcf5dd8a88..7c07082b3041 100644 --- a/pkgs/applications/office/grisbi/default.nix +++ b/pkgs/applications/office/grisbi/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "grisbi-${version}"; - version = "1.0.2"; + version = "1.0.4"; src = fetchurl { url = "mirror://sourceforge/grisbi/${name}.tar.bz2"; - sha256 = "1m31a1h4i59z36ri4a22rrd29byg6wnxq37559042hdhn557kazm"; + sha256 = "1rh2iqvi7lpz5l57vn7qk9azil3y1g65mfbi9hhbx956knh9bpf6"; }; nativeBuildInputs = [ pkgconfig wrapGAppsHook ]; diff --git a/pkgs/applications/office/zotero/default.nix b/pkgs/applications/office/zotero/default.nix index 2f9999ab856c..b070958b756b 100644 --- a/pkgs/applications/office/zotero/default.nix +++ b/pkgs/applications/office/zotero/default.nix @@ -34,6 +34,7 @@ fhsEnv = buildFHSUserEnv { targetPkgs = pkgs: with pkgs; with xorg; [ gtk3 dbus-glib libXt nss + libX11 ]; }; diff --git a/pkgs/applications/science/astronomy/stellarium/default.nix b/pkgs/applications/science/astronomy/stellarium/default.nix index 945294c556f4..111608126718 100644 --- a/pkgs/applications/science/astronomy/stellarium/default.nix +++ b/pkgs/applications/science/astronomy/stellarium/default.nix @@ -6,13 +6,13 @@ mkDerivation rec { name = "stellarium-${version}"; - version = "0.18.0"; + version = "0.18.1"; src = fetchFromGitHub { owner = "Stellarium"; repo = "stellarium"; rev = "v${version}"; - sha256 = "11rh4gan8bhqb2n6a94g773drbq4ffii7aqjwxv97r036579azb2"; + sha256 = "0srwi08azzzayf50dr4dr1zcdcc8hwribzv7xvb7hbp6xp51c813"; }; nativeBuildInputs = [ cmake perl ]; diff --git a/pkgs/applications/science/biology/picard-tools/default.nix b/pkgs/applications/science/biology/picard-tools/default.nix index 830f4af514a5..eea889cb4ab7 100644 --- a/pkgs/applications/science/biology/picard-tools/default.nix +++ b/pkgs/applications/science/biology/picard-tools/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "picard-tools-${version}"; - version = "2.18.7"; + version = "2.18.9"; src = fetchurl { url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar"; - sha256 = "00p5wmd3kb7pr3yvsqz660fsk845dwgj76bllwjfrbiscjdyhy9f"; + sha256 = "0mmyzw75szjycncrgilj1kly3ldawqndxy59059qc8ddbiwn1zky"; }; buildInputs = [ jre makeWrapper ]; diff --git a/pkgs/applications/science/electronics/verilator/default.nix b/pkgs/applications/science/electronics/verilator/default.nix index 9ecc9f20ac16..6ee3f3266f8d 100644 --- a/pkgs/applications/science/electronics/verilator/default.nix +++ b/pkgs/applications/science/electronics/verilator/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { description = "Fast and robust (System)Verilog simulator/compiler"; homepage = "https://www.veripool.org/wiki/verilator"; license = stdenv.lib.licenses.lgpl3; - platforms = stdenv.lib.platforms.linux; + platforms = stdenv.lib.platforms.unix; maintainers = with stdenv.lib.maintainers; [ thoughtpolice ]; }; } diff --git a/pkgs/applications/science/logic/cvc4/default.nix b/pkgs/applications/science/logic/cvc4/default.nix index 91ea7e500144..222021bb1c9f 100644 --- a/pkgs/applications/science/logic/cvc4/default.nix +++ b/pkgs/applications/science/logic/cvc4/default.nix @@ -1,19 +1,19 @@ { stdenv, fetchurl, cln, gmp, swig, pkgconfig , readline, libantlr3c, boost, jdk, autoreconfHook -, python2, antlr3_4 +, python3, antlr3_4 }: stdenv.mkDerivation rec { name = "cvc4-${version}"; - version = "1.5"; + version = "1.6"; src = fetchurl { url = "https://cvc4.cs.stanford.edu/downloads/builds/src/cvc4-${version}.tar.gz"; - sha256 = "0yxxawgc9vd2cz883swjlm76rbdkj48n7a8dfppsami530y2rvhi"; + sha256 = "1iw793zsi48q91lxpf8xl8lnvv0jsj4whdad79rakywkm1gbs62w"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; - buildInputs = [ gmp cln readline swig libantlr3c antlr3_4 boost jdk python2 ]; + buildInputs = [ gmp cln readline swig libantlr3c antlr3_4 boost jdk python3 ]; configureFlags = [ "--enable-language-bindings=c,c++,java" "--enable-gpl" @@ -38,6 +38,6 @@ stdenv.mkDerivation rec { homepage = http://cvc4.cs.nyu.edu/web/; license = licenses.gpl3; platforms = platforms.unix; - maintainers = with maintainers; [ vbgl thoughtpolice ]; + maintainers = with maintainers; [ vbgl thoughtpolice gebner ]; }; } diff --git a/pkgs/applications/science/logic/eprover/default.nix b/pkgs/applications/science/logic/eprover/default.nix index 9b0ba0799c78..95f5385fac3d 100644 --- a/pkgs/applications/science/logic/eprover/default.nix +++ b/pkgs/applications/science/logic/eprover/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "eprover-${version}"; - version = "2.0"; + version = "2.1"; src = fetchurl { url = "https://wwwlehre.dhbw-stuttgart.de/~sschulz/WORK/E_DOWNLOAD/V_${version}/E.tgz"; - sha256 = "1xmwr32pd8lv3f6yh720mdqhi3na505y3zbgcsgh2hwb7b5i3ngb"; + sha256 = "1gh99ajmza33f54idhqkdqxp5zh2k06jsf45drihnrzydlqv1n7l"; }; buildInputs = [ which ]; @@ -16,10 +16,6 @@ stdenv.mkDerivation rec { ''; configureFlags = "--exec-prefix=$(out) --man-prefix=$(out)/share/man"; - postInstall = '' - sed -e s,EXECPATH=.\*,EXECPATH=$out/bin, -i $out/bin/eproof{,_ram} - ''; - meta = with stdenv.lib; { description = "Automated theorem prover for full first-order logic with equality"; homepage = http://www.eprover.org/; diff --git a/pkgs/applications/science/logic/monosat/default.nix b/pkgs/applications/science/logic/monosat/default.nix new file mode 100644 index 000000000000..b0de08e489ad --- /dev/null +++ b/pkgs/applications/science/logic/monosat/default.nix @@ -0,0 +1,73 @@ +{ stdenv, fetchFromGitHub, cmake, zlib, gmp, jdk8, + # The JDK we use on Darwin currenly makes extensive use of rpaths which are + # annoying and break the python library, so let's not bother for now + includeJava ? !stdenv.hostPlatform.isDarwin, includeGplCode ? true }: + +with stdenv.lib; + +let + boolToCmake = x: if x then "ON" else "OFF"; + + rev = "cbaf79cfd01cba97b46cae5a9d7b832771ff442c"; + sha256 = "1nx3wh34y53lrwgh94cskdrdyrj26jn3py7z2cn4bvacz0wzhi6n"; + + pname = "monosat"; + version = substring 0 7 sha256; + + src = fetchFromGitHub { + owner = "sambayless"; + repo = pname; + inherit rev sha256; + }; + + core = stdenv.mkDerivation rec { + name = "${pname}-${version}"; + inherit src; + buildInputs = [ cmake zlib gmp jdk8 ]; + + cmakeFlags = [ "-DJAVA=${boolToCmake includeJava}" "-DGPL=${boolToCmake includeGplCode}" ]; + + # Minor logic bug: https://github.com/sambayless/monosat/issues/11#issuecomment-403297720 + postPatch = '' + substituteInPlace CMakeLists.txt \ + --replace '"&&" "true"' '"||" "true"' + ''; + + postInstall = optionalString includeJava '' + mkdir -p $out/share/java + cp monosat.jar $out/share/java + ''; + + passthru = { inherit python; }; + + meta = { + description = "SMT solver for Monotonic Theories"; + platforms = platforms.unix; + license = if includeGplCode then licenses.gpl2 else licenses.mit; + homepage = https://github.com/sambayless/monosat; + }; + }; + + python = { buildPythonPackage, cython }: buildPythonPackage { + inherit pname version src; + + # The top-level "source" is what fetchFromGitHub gives us. The rest is inside the repo + sourceRoot = "source/src/monosat/api/python/"; + + propagatedBuildInputs = [ core cython ]; + + # The relative paths here don't make sense for our Nix build + # Also, let's use cython since it should produce faster bindings + # TODO: do we want to just reference the core monosat library rather than copying the + # shared lib? The current setup.py copies the .dylib/.so... + postPatch = '' + substituteInPlace setup.py \ + --replace '../../../../libmonosat.dylib' '${core}/lib/libmonosat.dylib' \ + --replace '../../../../libmonosat.so' '${core}/lib/libmonosat.so' \ + --replace 'use_cython=False' 'use_cython=True' + + # This seems to be forgotten and unused. See https://github.com/sambayless/monosat/issues/10 + rm monosat/cnf.py + ''; + }; +in core \ No newline at end of file diff --git a/pkgs/applications/science/logic/potassco/clingo.nix b/pkgs/applications/science/logic/potassco/clingo.nix index 6bf19a2a2f4d..4abfdf9162c0 100644 --- a/pkgs/applications/science/logic/potassco/clingo.nix +++ b/pkgs/applications/science/logic/potassco/clingo.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "clingo"; - version = "5.2.2"; + version = "5.3.0"; src = fetchzip { url = "https://github.com/potassco/clingo/archive/v${version}.tar.gz"; - sha256 = "04rjwpna37gzm8vxr09z3z6ay8y8cxbjd8lga7xvqfpn2l178zjm"; + sha256 = "01czx26p8gv81ahrh650x208hjhd8bx1kb688fmk1m4pw4yg5bfv"; }; buildInputs = []; diff --git a/pkgs/applications/science/logic/vampire/default.nix b/pkgs/applications/science/logic/vampire/default.nix new file mode 100644 index 000000000000..e05839b2a143 --- /dev/null +++ b/pkgs/applications/science/logic/vampire/default.nix @@ -0,0 +1,59 @@ +{ stdenv, fetchFromGitHub, fetchpatch, z3, zlib, git }: + +stdenv.mkDerivation rec { + version = "4.2.2"; + name = "vampire-${version}"; + + src = fetchFromGitHub { + owner = "vprover"; + repo = "vampire"; + rev = version; + sha256 = "080zwgmyhn0b2c6hqlhcgaw7n3frz02sh894v5kk68kzxbqr29w2"; + fetchSubmodules = true; + leaveDotGit = true; + }; + + nativeBuildInputs = [ git ]; + buildInputs = [ z3 zlib ]; + + makeFlags = [ "vampire_z3_rel" "CC:=$(CC)" "CXX:=$(CXX)" ]; + + patches = [ + # https://github.com/vprover/vampire/pull/54 + (fetchpatch { + name = "fix-apple-cygwin-defines.patch"; + url = https://github.com/vprover/vampire/pull/54.patch; + sha256 = "0i6nrc50wlg1dqxq38lkpx4rmfb3lf7s8f95l4jkvqp0nxa20cza"; + }) + # https://github.com/vprover/vampire/pull/55 + (fetchpatch { + name = "fix-wait-any.patch"; + url = https://github.com/vprover/vampire/pull/55.patch; + sha256 = "1pwfpwpl23bqsgkmmvw6bnniyvp5j9v8l3z9s9pllfabnfcrcz9l"; + }) + # https://github.com/vprover/vampire/pull/56 + (fetchpatch { + name = "fenv.patch"; + url = https://github.com/vprover/vampire/pull/56.patch; + sha256 = "0xl3jcyqmk146mg3qj5hdd0pbja6wbq3250zmfhbxqrjh40mm40g"; + }) + ]; + + enableParallelBuilding = true; + + fixupPhase = '' + rm -rf z3 + ''; + + installPhase = '' + install -m0755 -D vampire_z3_rel* $out/bin/vampire + ''; + + meta = with stdenv.lib; { + homepage = "https://vprover.github.io/"; + description = "The Vampire Theorem Prover"; + platforms = platforms.unix; + license = licenses.unfree; + maintainers = with maintainers; [ gebner ]; + }; +} diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index f20b75605d5a..25ebee96a103 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -7,11 +7,11 @@ }: stdenv.mkDerivation rec { - name = "R-3.5.0"; + name = "R-3.5.1"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-3/${name}.tar.gz"; - sha256 = "0w38865laqg28cdhikxdxhx4rfp0kgcn72gakwypsy91br9ja5zx"; + sha256 = "0463bff5eea0f3d93fa071f79c18d0993878fd4f2e18ae6cf22c1639d11457ed"; }; buildInputs = [ @@ -65,8 +65,7 @@ stdenv.mkDerivation rec { installTargets = [ "install" "install-info" "install-pdf" ]; - doCheck = withRecommendedPackages; # R 3.5.0 fails the test suite if the - # recommended packages are not built + doCheck = true; preCheck = "export TZ=CET; bin/Rscript -e 'sessionInfo()'"; enableParallelBuilding = true; diff --git a/pkgs/applications/science/math/bliss/default.nix b/pkgs/applications/science/math/bliss/default.nix new file mode 100644 index 000000000000..b96aa60da686 --- /dev/null +++ b/pkgs/applications/science/math/bliss/default.nix @@ -0,0 +1,37 @@ +{ stdenv, fetchurl, unzip, doxygen }: + +stdenv.mkDerivation rec { + name = "bliss-${version}"; + version = "0.73"; + + src = fetchurl { + url = "http://www.tcs.hut.fi/Software/bliss/${name}.zip"; + sha256 = "f57bf32804140cad58b1240b804e0dbd68f7e6bf67eba8e0c0fa3a62fd7f0f84"; + }; + + patches = fetchurl { + url = "http://scip.zib.de/download/bugfixes/scip-5.0.1/bliss-0.73.patch"; + sha256 = "815868d6586bcd49ff3c28e14ccb536d38b2661151088fe08187c13909c5dab0"; + }; + + nativeBuildInputs = [ unzip doxygen ]; + + preBuild = '' + doxygen Doxyfile + ''; + + installPhase = '' + mkdir -p $out/bin $out/share/doc/bliss $out/lib $out/include + mv bliss $out/bin + mv html/* COPYING* $out/share/doc/bliss + mv *.a $out/lib + mv *.h *.hh $out/include + ''; + + meta = with stdenv.lib; { + description = "bliss is an open source tool for computing automorphism groups and canonical forms of graphs. It has both a command line user interface as well as C++ and C programming language APIs."; + homepage = http://www.tcs.hut.fi/Software/bliss/; + license = licenses.lgpl3; + platforms = [ "i686-linux" "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/science/math/hmetis/default.nix b/pkgs/applications/science/math/hmetis/default.nix new file mode 100644 index 000000000000..9eab9ca39992 --- /dev/null +++ b/pkgs/applications/science/math/hmetis/default.nix @@ -0,0 +1,42 @@ +{ stdenv, fetchurl, ghostscript }: + +stdenv.mkDerivation rec { + name = "hmetis-${version}"; + version = "1.5"; + + src = fetchurl { + url = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/hmetis/hmetis-${version}-linux.tar.gz"; + sha256 = "e835a098c046e9c26cecb8addfea4d18ff25214e49585ffd87038e72819be7e1"; + }; + + nativeBuildInputs = [ ghostscript ]; + + binaryFiles = "hmetis khmetis shmetis"; + + patchPhase = '' + for binaryfile in $binaryFiles; do + patchelf \ + --set-interpreter ${stdenv.glibc}/lib/ld-linux.so.2 \ + --set-rpath ${stdenv.glibc}/lib \ + $binaryfile + done + ''; + + buildPhase = '' + gs -sOutputFile=manual.pdf -sDEVICE=pdfwrite -SNOPAUSE -dBATCH manual.ps + ''; + + installPhase = '' + mkdir -p $out/bin $out/share/doc/hmetis $out/lib + mv $binaryFiles $out/bin + mv manual.pdf $out/share/doc/hmetis + mv libhmetis.a $out/lib + ''; + + meta = with stdenv.lib; { + description = "hMETIS is a set of programs for partitioning hypergraphs"; + homepage = http://glaros.dtc.umn.edu/gkhome/metis/hmetis/overview; + license = licenses.unfree; + platforms = [ "i686-linux" "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix index 11ae3852f067..28bd31506874 100644 --- a/pkgs/applications/science/math/qalculate-gtk/default.nix +++ b/pkgs/applications/science/math/qalculate-gtk/default.nix @@ -1,12 +1,14 @@ -{ stdenv, fetchurl, intltool, autoreconfHook, pkgconfig, libqalculate, gtk3, wrapGAppsHook }: +{ stdenv, fetchFromGitHub, intltool, autoreconfHook, pkgconfig, libqalculate, gtk3, wrapGAppsHook }: stdenv.mkDerivation rec { name = "qalculate-gtk-${version}"; - version = "2.5.0"; + version = "2.6.0"; - src = fetchurl { - url = "https://github.com/Qalculate/qalculate-gtk/archive/v${version}.tar.gz"; - sha256 = "1hwwsdk3mlzvg9fsnv0hpj0s1lfkhycwv3sx2yrjwffzphhmxs7a"; + src = fetchFromGitHub { + owner = "qalculate"; + repo = "qalculate-gtk"; + rev = "v${version}"; + sha256 = "0b2g9ziypcplczsm14b4i2k7vpiw9ll28qskv1fdhyqb0fij3qcx"; }; patchPhase = '' diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index 244a6ea72673..2eb7f8100597 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -104,13 +104,6 @@ stdenv.mkDerivation rec { # https://trac.sagemath.org/ticket/24935 ./patches/sphinx-1.7.patch - # https://trac.sagemath.org/ticket/25320 - (fetchpatch { - name = "zero_division_error_formatting.patch"; - url = "https://git.sagemath.org/sage.git/patch/?h=f79070ddd09fa0ad6b340b097bd8d690a7aa35f0"; - sha256 = "02wsc3wbp8g8dk5jcjyv18d9v537h3zp5v8lwir46j4na4kj0dlb"; - }) - # Adapt hashes to new boost version # https://trac.sagemath.org/ticket/22243 # (this ticket doesn't only upgrade boost but also avoids this problem in the future) diff --git a/pkgs/applications/science/programming/scyther/default.nix b/pkgs/applications/science/programming/scyther/default.nix index beef26c6032a..e0993a580193 100644 --- a/pkgs/applications/science/programming/scyther/default.nix +++ b/pkgs/applications/science/programming/scyther/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, buildEnv, callPackage_i686, fetchFromGitHub, python27Packages, graphviz +{ stdenv, lib, buildEnv, pkgsi686Linux, fetchFromGitHub, python27Packages, graphviz , includeGUI ? true , includeProtocols ? true }: @@ -20,7 +20,7 @@ let platforms = platforms.linux; }; - cli = callPackage_i686 ./cli.nix { + cli = pkgsi686Linux.callPackage ./cli.nix { inherit version src meta; }; @@ -47,7 +47,7 @@ let python27Packages.wxPython graphviz ]; - + installPhase = '' mkdir -p "$out"/gui "$out"/bin cp -r gui/* "$out"/gui diff --git a/pkgs/applications/search/recoll/default.nix b/pkgs/applications/search/recoll/default.nix index 8c442f31cd14..01a4f4023023 100644 --- a/pkgs/applications/search/recoll/default.nix +++ b/pkgs/applications/search/recoll/default.nix @@ -2,7 +2,8 @@ , qt4, xapian, file, python, perl , djvulibre, groff, libxslt, unzip, poppler_utils, antiword, catdoc, lyx , libwpd, unrtf, untex -, ghostscript, gawk, gnugrep, gnused, gnutar, gzip, libiconv }: +, ghostscript, gawk, gnugrep, gnused, gnutar, gzip, libiconv, zlib +, withGui ? true }: assert stdenv.system != "powerpc-linux"; @@ -15,10 +16,13 @@ stdenv.mkDerivation rec { sha256 = "186bj8zx2xw9hwrzvzxdgdin9nj7msiqh5j57w5g7j4abdlsisjn"; }; - configureFlags = [ "--enable-recollq" ] ++ - (if stdenv.isLinux then [ "--with-inotify" ] else [ "--without-inotify" ]); + configureFlags = [ "--enable-recollq" ] + ++ lib.optionals (!withGui) [ "--disable-qtgui" "--disable-x11mon" ] + ++ (if stdenv.isLinux then [ "--with-inotify" ] else [ "--without-inotify" ]); - buildInputs = [ qt4 xapian file python bison ]; + buildInputs = [ xapian file python bison zlib ] + ++ lib.optional withGui qt4 + ++ lib.optional stdenv.isDarwin libiconv; patchPhase = stdenv.lib.optionalString stdenv.isDarwin '' sed -i 's/-Wl,--no-undefined -Wl,--warn-unresolved-symbols//' Makefile.am diff --git a/pkgs/applications/version-management/meld/default.nix b/pkgs/applications/version-management/meld/default.nix index f6816ec15484..3f05bd08f3f4 100644 --- a/pkgs/applications/version-management/meld/default.nix +++ b/pkgs/applications/version-management/meld/default.nix @@ -5,14 +5,14 @@ let pname = "meld"; - version = "3.18.1"; + version = "3.18.2"; inherit (python3Packages) python buildPythonApplication pycairo pygobject3; in buildPythonApplication rec { name = "${pname}-${version}"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${gnome3.versionBranch version}/${name}.tar.xz"; - sha256 = "0yg8i1ff3rsavsaxbnd6dxmfsiyv49kk8rv5wqnyhf2zmfp8rxis"; + sha256 = "109px6phfizi2jqrc7d7k7j6nvmanbfp5lykqfrk2sky77sand0r"; }; buildInputs = [ diff --git a/pkgs/applications/version-management/p4v/default.nix b/pkgs/applications/version-management/p4v/default.nix index 27e029d39d1e..f82b80067bf2 100644 --- a/pkgs/applications/version-management/p4v/default.nix +++ b/pkgs/applications/version-management/p4v/default.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://cdist2.perforce.com/perforce/r17.3/bin.linux26x86_64/p4v.tgz"; - sha256 = "f317607f1bc8877db01ff020b8b0857c2d0f8600474d152749264aea0be66b21"; + sha256 = "9ded42683141e1808535ec3e87d3149f890315c192d6e97212794fd54862b9a4"; }; dontBuild = true; diff --git a/pkgs/applications/video/mpv/default.nix b/pkgs/applications/video/mpv/default.nix index 58628aa1f8e8..7880c3150872 100644 --- a/pkgs/applications/video/mpv/default.nix +++ b/pkgs/applications/video/mpv/default.nix @@ -7,11 +7,13 @@ libGLU_combined ? null, libX11 ? null, libXext ? null, - libXxf86vm ? null + libXxf86vm ? null, + libXrandr ? null -, waylandSupport ? false, - wayland ? null, - libxkbcommon ? null +, waylandSupport ? false + , wayland ? null + , wayland-protocols ? null + , libxkbcommon ? null , rubberbandSupport ? true, rubberband ? null , xineramaSupport ? true, libXinerama ? null @@ -46,8 +48,8 @@ with stdenv.lib; let available = x: x != null; in -assert x11Support -> all available [libGLU_combined libX11 libXext libXxf86vm]; -assert waylandSupport -> all available [wayland libxkbcommon]; +assert x11Support -> all available [libGLU_combined libX11 libXext libXxf86vm libXrandr]; +assert waylandSupport -> all available [wayland wayland-protocols libxkbcommon]; assert rubberbandSupport -> available rubberband; assert xineramaSupport -> x11Support && available libXinerama; assert xvSupport -> x11Support && available libXv; @@ -150,8 +152,8 @@ in stdenv.mkDerivation rec { ++ optional vapoursynthSupport vapoursynth ++ optional archiveSupport libarchive ++ optionals dvdnavSupport [ libdvdnav libdvdnav.libdvdread ] - ++ optionals x11Support [ libX11 libXext libGLU_combined libXxf86vm ] - ++ optionals waylandSupport [ wayland libxkbcommon ] + ++ optionals x11Support [ libX11 libXext libGLU_combined libXxf86vm libXrandr ] + ++ optionals waylandSupport [ wayland wayland-protocols libxkbcommon ] ++ optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ libiconv Cocoa CoreAudio ]); diff --git a/pkgs/applications/video/openshot-qt/default.nix b/pkgs/applications/video/openshot-qt/default.nix index aa9643416485..d1849e2b4b35 100644 --- a/pkgs/applications/video/openshot-qt/default.nix +++ b/pkgs/applications/video/openshot-qt/default.nix @@ -4,13 +4,13 @@ python3Packages.buildPythonApplication rec { name = "openshot-qt-${version}"; - version = "2.4.1"; + version = "2.4.2"; src = fetchFromGitHub { owner = "OpenShot"; repo = "openshot-qt"; rev = "v${version}"; - sha256 = "182dldj9ybs6aqjfrc9dqx1mifdyhv0rf3ifxcp52cm9rz5yv8ml"; + sha256 = "0m4fq9vj8gc5ngk8qf6ikj85qgzxhfk7nnz7n7362dzlfymaz18q"; }; nativeBuildInputs = [ doxygen wrapGAppsHook ]; diff --git a/pkgs/applications/video/openshot-qt/libopenshot.nix b/pkgs/applications/video/openshot-qt/libopenshot.nix index f84e2e83761a..9e5e278ba894 100644 --- a/pkgs/applications/video/openshot-qt/libopenshot.nix +++ b/pkgs/applications/video/openshot-qt/libopenshot.nix @@ -8,13 +8,13 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "libopenshot-${version}"; - version = "0.1.9"; + version = "0.2.0"; src = fetchFromGitHub { owner = "OpenShot"; repo = "libopenshot"; rev = "v${version}"; - sha256 = "0c7q5cfnp481ysyvgzznvix7j4licq9knwrb83g3xqs4cx573xr3"; + sha256 = "15i7wir1ph4g47634f8j3s8ay20zypj6p6fq8781g4w9gzgwrz2c"; }; patchPhase = '' diff --git a/pkgs/build-support/docker/default.nix b/pkgs/build-support/docker/default.nix index b01f0b722724..ff45cf81d7e5 100644 --- a/pkgs/build-support/docker/default.nix +++ b/pkgs/build-support/docker/default.nix @@ -420,8 +420,8 @@ rec { buildImage = args@{ # Image name. name, - # Image tag. - tag ? "latest", + # Image tag, when null then the nix output hash will be used. + tag ? null, # Parent image, to append to. fromImage ? null, # Name of the parent image; will be read from the image otherwise. @@ -471,12 +471,19 @@ rec { buildInputs = [ jshon pigz coreutils findutils jq ]; # Image name and tag must be lowercase imageName = lib.toLower name; - imageTag = lib.toLower tag; + imageTag = if tag == null then "" else lib.toLower tag; inherit fromImage baseJson; layerClosure = writeReferencesToFile layer; passthru.buildArgs = args; passthru.layer = layer; } '' + ${lib.optionalString (tag == null) '' + outName="$(basename "$out")" + outHash=$(echo "$outName" | cut -d - -f 1) + + imageTag=$outHash + ''} + # Print tar contents: # 1: Interpreted as relative to the root directory # 2: With no trailing slashes on directories diff --git a/pkgs/build-support/docker/examples.nix b/pkgs/build-support/docker/examples.nix index ca7f78093794..ec2667310cdd 100644 --- a/pkgs/build-support/docker/examples.nix +++ b/pkgs/build-support/docker/examples.nix @@ -13,6 +13,7 @@ rec { # 1. basic example bash = buildImage { name = "bash"; + tag = "latest"; contents = pkgs.bashInteractive; }; @@ -65,6 +66,7 @@ rec { in buildImage { name = "nginx-container"; + tag = "latest"; contents = pkgs.nginx; runAsRoot = '' @@ -106,6 +108,7 @@ rec { # docker run -it --rm nix nix-store -qR $(nix-build '<nixpkgs>' -A nix) nix = buildImageWithNixDb { name = "nix"; + tag = "latest"; contents = [ # nix-store uses cat program to display results as specified by # the image env variable NIX_PAGER. @@ -121,6 +124,7 @@ rec { # dockerTools chain. onTopOfPulledImage = buildImage { name = "onTopOfPulledImage"; + tag = "latest"; fromImage = nixFromDockerHub; contents = [ pkgs.hello ]; }; @@ -129,6 +133,7 @@ rec { # See issue #34779 and PR #40947 for details. runAsRootExtraCommands = pkgs.dockerTools.buildImage { name = "runAsRootExtraCommands"; + tag = "latest"; contents = [ pkgs.coreutils ]; # The parens here are to create problematic bash to embed and eval. In case # this is *embedded* into the script (with nix expansion) the initial quotes diff --git a/pkgs/build-support/rust/build-rust-crate.nix b/pkgs/build-support/rust/build-rust-crate.nix index 5c738dd7f0b3..be76c283babc 100644 --- a/pkgs/build-support/rust/build-rust-crate.nix +++ b/pkgs/build-support/rust/build-rust-crate.nix @@ -15,6 +15,12 @@ let makeDeps = dependencies: " --extern ${extern}=${dep.out}/lib/lib${extern}-${dep.metadata}${buildPlatform.extensions.sharedLibrary}") ) dependencies); + # This doesn't appear to be officially documented anywhere yet. + # See https://github.com/rust-lang-nursery/rust-forge/issues/101. + target_os = if buildPlatform.isDarwin + then "macos" + else buildPlatform.parsed.kernel.name; + echo_build_heading = colors: '' echo_build_heading() { start="" @@ -101,7 +107,7 @@ let makeDeps = dependencies: export CARGO_PKG_AUTHORS="${authors}" export CARGO_CFG_TARGET_ARCH=${buildPlatform.parsed.cpu.name} - export CARGO_CFG_TARGET_OS=${buildPlatform.parsed.kernel.name} + export CARGO_CFG_TARGET_OS=${target_os} export CARGO_CFG_TARGET_FAMILY="unix" export CARGO_CFG_UNIX=1 export CARGO_CFG_TARGET_ENV="gnu" diff --git a/pkgs/build-support/vm/default.nix b/pkgs/build-support/vm/default.nix index 9cdcc2a752d0..6a6deaa875a7 100644 --- a/pkgs/build-support/vm/default.nix +++ b/pkgs/build-support/vm/default.nix @@ -965,22 +965,22 @@ rec { }; debian8i386 = { - name = "debian-8.10-jessie-i386"; - fullName = "Debian 8.10 Jessie (i386)"; + name = "debian-8.11-jessie-i386"; + fullName = "Debian 8.11 Jessie (i386)"; packagesList = fetchurl { url = mirror://debian/dists/jessie/main/binary-i386/Packages.xz; - sha256 = "1w1gm195dcrndy5486kcv0h9l3br9dqnqyyhmavp4vr5w2zk7amk"; + sha256 = "0adblarhx50yga900il6m25ng0csa81i3wid1dxxmydbdmri7v7d"; }; urlPrefix = mirror://debian; packages = commonDebianPackages; }; debian8x86_64 = { - name = "debian-8.10-jessie-amd64"; - fullName = "Debian 8.10 Jessie (amd64)"; + name = "debian-8.11-jessie-amd64"; + fullName = "Debian 8.11 Jessie (amd64)"; packagesList = fetchurl { url = mirror://debian/dists/jessie/main/binary-amd64/Packages.xz; - sha256 = "045700qsrmd3lng2rw8nfs5ci7pf660lwl6alpzkyjikyp6pg7k8"; + sha256 = "09y1mv4kqllhxpk1ibjsyl5jig5bp0qxw6pp4sn56rglrpygmn5x"; }; urlPrefix = mirror://debian; packages = commonDebianPackages; diff --git a/pkgs/data/fonts/babelstone-han/default.nix b/pkgs/data/fonts/babelstone-han/default.nix index fbf62e3ba386..67080e73c46d 100644 --- a/pkgs/data/fonts/babelstone-han/default.nix +++ b/pkgs/data/fonts/babelstone-han/default.nix @@ -1,7 +1,7 @@ {stdenv, fetchzip}: let - version = "11.0.2"; + version = "11.0.3"; in fetchzip { name = "babelstone-han-${version}"; @@ -10,7 +10,7 @@ in fetchzip { mkdir -p $out/share/fonts/truetype unzip $downloadedFile '*.ttf' -d $out/share/fonts/truetype ''; - sha256 = "003cz520riskjp729y3piqhmnzfw3jyrmb94im7jyvlc7hp14cdh"; + sha256 = "0c8s21kllyilwivrb8gywq818y67w3zpann34hz36vy0wyiswn1c"; meta = with stdenv.lib; { description = "Unicode CJK font with over 36000 Han characters"; diff --git a/pkgs/data/fonts/source-han-code-jp/default.nix b/pkgs/data/fonts/source-han-code-jp/default.nix new file mode 100644 index 000000000000..fc016a457c22 --- /dev/null +++ b/pkgs/data/fonts/source-han-code-jp/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchzip }: + +let + pname = "source-han-code-jp"; + version = "2.011R"; +in fetchzip { + name = "${pname}-${version}"; + + url = "https://github.com/adobe-fonts/${pname}/archive/${version}.zip"; + + postFetch = '' + mkdir -p $out/share/fonts + unzip -j $downloadedFile \*.otf -d $out/share/fonts/opentype + ''; + + sha256 = "184vrjkymcm29k1cx00cdvjchzqr1w17925lmh85f0frx7vwljcd"; + + meta = { + description = "A monospaced Latin font suitable for coding"; + maintainers = with stdenv.lib.maintainers; [ mt-caret ]; + platforms = with stdenv.lib.platforms; all; + homepage = https://blogs.adobe.com/CCJKType/2015/06/source-han-code-jp.html; + license = stdenv.lib.licenses.ofl; + }; +} diff --git a/pkgs/data/icons/arc-icon-theme/default.nix b/pkgs/data/icons/arc-icon-theme/default.nix index 84bf45a52bbe..6529e5c571c2 100644 --- a/pkgs/data/icons/arc-icon-theme/default.nix +++ b/pkgs/data/icons/arc-icon-theme/default.nix @@ -20,7 +20,8 @@ stdenv.mkDerivation rec { description = "Arc icon theme"; homepage = https://github.com/horst3180/arc-icon-theme; license = licenses.gpl3; - platforms = platforms.all; + # moka-icon-theme dependency is restricted to linux + platforms = platforms.linux; maintainers = with maintainers; [ romildo ]; }; } diff --git a/pkgs/data/icons/faba-icon-theme/default.nix b/pkgs/data/icons/faba-icon-theme/default.nix index fdad4f0f46da..e9d9efcfcb02 100644 --- a/pkgs/data/icons/faba-icon-theme/default.nix +++ b/pkgs/data/icons/faba-icon-theme/default.nix @@ -1,25 +1,23 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, elementary-icon-theme, gtk3 }: +{ stdenv, fetchFromGitHub, meson, ninja, gtk3, elementary-icon-theme }: stdenv.mkDerivation rec { name = "${package-name}-${version}"; package-name = "faba-icon-theme"; - version = "2016-09-13"; + version = "4.3"; src = fetchFromGitHub { owner = "moka-project"; repo = package-name; - rev = "00431894bce5fb1b8caccaee064788996be228a7"; - sha256 = "0hif030pd4w3s851k0s65w0mf2pik10ha25ycpsv91gpbgarqcns"; + rev = "v${version}"; + sha256 = "0xh6ppr73p76z60ym49b4d0liwdc96w41cc5p07d48hxjsa6qd6n"; }; - nativeBuildInputs = [ autoreconfHook elementary-icon-theme gtk3 ]; + nativeBuildInputs = [ meson ninja gtk3 elementary-icon-theme ]; postPatch = '' - substituteInPlace Makefile.am --replace '$(DESTDIR)'/usr $out + patchShebangs meson/post_install.py ''; - postFixup = "gtk-update-icon-cache $out/share/icons/Faba"; - meta = with stdenv.lib; { description = "A sexy and modern icon theme with Tango influences"; homepage = https://snwh.org/moka; diff --git a/pkgs/data/icons/faba-mono-icons/default.nix b/pkgs/data/icons/faba-mono-icons/default.nix index bdb6f651e6a5..a4ffefe1f26d 100644 --- a/pkgs/data/icons/faba-mono-icons/default.nix +++ b/pkgs/data/icons/faba-mono-icons/default.nix @@ -24,7 +24,8 @@ stdenv.mkDerivation rec { description = "The full set of Faba monochrome panel icons"; homepage = https://snwh.org/moka; license = licenses.gpl3; - platforms = platforms.all; + # moka-icon-theme dependency is restricted to linux + platforms = platforms.linux; maintainers = with maintainers; [ romildo ]; }; } diff --git a/pkgs/data/icons/moka-icon-theme/default.nix b/pkgs/data/icons/moka-icon-theme/default.nix index f3180db54dcf..2b4bb5d67c3b 100644 --- a/pkgs/data/icons/moka-icon-theme/default.nix +++ b/pkgs/data/icons/moka-icon-theme/default.nix @@ -1,30 +1,29 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, faba-icon-theme, gtk3 }: +{ stdenv, fetchFromGitHub, meson, ninja, gtk3, faba-icon-theme }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "moka-icon-theme"; - version = "5.3.6"; + version = "5.4.0"; src = fetchFromGitHub { owner = "snwh"; repo = pname; rev = "v${version}"; - sha256 = "17f8k8z8xvib4hkxq0cw9j7bhdpqpv5frrkyc4sbyildcbavzzbr"; + sha256 = "015l02im4mha5z91dbchxf6xkp66d346bg3xskwg0rh3lglhjsrd"; }; - nativeBuildInputs = [ autoreconfHook faba-icon-theme gtk3 ]; + nativeBuildInputs = [ meson ninja gtk3 faba-icon-theme ]; postPatch = '' - substituteInPlace Makefile.am --replace '$(DESTDIR)'/usr $out + patchShebangs meson/post_install.py ''; - postFixup = "gtk-update-icon-cache $out/share/icons/Moka"; - meta = with stdenv.lib; { description = "An icon theme designed with a minimal flat style using simple geometry and bright colours"; homepage = https://snwh.org/moka; license = with licenses; [ cc-by-sa-40 gpl3 ]; - platforms = platforms.all; + # darwin cannot deal with file names differing only in case + platforms = platforms.linux; maintainers = with maintainers; [ romildo ]; }; } diff --git a/pkgs/data/misc/hackage/default.nix b/pkgs/data/misc/hackage/default.nix index d25a165e40c4..2e603e22dfa7 100644 --- a/pkgs/data/misc/hackage/default.nix +++ b/pkgs/data/misc/hackage/default.nix @@ -1,6 +1,6 @@ { fetchurl }: fetchurl { - url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/dc7b5d4f0ee056ec87a4a5069b3c68bdd316abd6.tar.gz"; - sha256 = "0llycqa2y6ng5bhzb19ya6p83k0chfycpivg9287gzsmj363j934"; + url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/532d9c821a36f220c928be40465a6ace52bc3818.tar.gz"; + sha256 = "1yqn87r75cdf45wkbfa5vqxvsaxqsmypwjl4pw5w1g8qfrdilr18"; } diff --git a/pkgs/desktops/gnome-3/apps/bijiben/default.nix b/pkgs/desktops/gnome-3/apps/bijiben/default.nix index 5ed4b487bdd9..06510c8f34ac 100644 --- a/pkgs/desktops/gnome-3/apps/bijiben/default.nix +++ b/pkgs/desktops/gnome-3/apps/bijiben/default.nix @@ -5,13 +5,13 @@ , gnome3, libxml2 }: let - version = "3.28.2"; + version = "3.28.3"; in stdenv.mkDerivation rec { name = "bijiben-${version}"; src = fetchurl { url = "mirror://gnome/sources/bijiben/${gnome3.versionBranch version}/${name}.tar.xz"; - sha256 = "1z1dqspjpyym27yav7pr813x7k0jdxifgj5rdxgp4m6cs1ixcvjs"; + sha256 = "0lg92fl6dmrybkxs3gqhyr8rq945y64k51l6s72yiads7pqabli2"; }; doCheck = true; diff --git a/pkgs/desktops/gnome-3/apps/gnome-boxes/default.nix b/pkgs/desktops/gnome-3/apps/gnome-boxes/default.nix index 2a26f9301123..6d55cbe8ee79 100644 --- a/pkgs/desktops/gnome-3/apps/gnome-boxes/default.nix +++ b/pkgs/desktops/gnome-3/apps/gnome-boxes/default.nix @@ -9,13 +9,13 @@ # TODO: ovirt (optional) let - version = "3.28.4"; + version = "3.28.5"; in stdenv.mkDerivation rec { name = "gnome-boxes-${version}"; src = fetchurl { url = "mirror://gnome/sources/gnome-boxes/${gnome3.versionBranch version}/${name}.tar.xz"; - sha256 = "1378zzqdwv0hnirg8k91s5vgkcl1brfild3hgach5jhg78nxdb4j"; + sha256 = "1z1qimspx1nw7l79rardxcx2bydj9nmk60vsdb611xzlqa3hkppm"; }; doCheck = true; diff --git a/pkgs/desktops/gnome-3/apps/gnome-logs/default.nix b/pkgs/desktops/gnome-3/apps/gnome-logs/default.nix index 614308f7b631..ae2b0f29f980 100644 --- a/pkgs/desktops/gnome-3/apps/gnome-logs/default.nix +++ b/pkgs/desktops/gnome-3/apps/gnome-logs/default.nix @@ -1,19 +1,46 @@ -{ stdenv, fetchurl, pkgconfig, gnome3, gtk3, wrapGAppsHook -, gettext, itstool, libxml2, libxslt, docbook_xsl, docbook_xml_dtd_43, systemd }: +{ stdenv, fetchurl, fetchpatch, meson, ninja, pkgconfig, gnome3, glib, gtk3, wrapGAppsHook, desktop-file-utils +, gettext, itstool, libxml2, libxslt, docbook_xsl, docbook_xml_dtd_43, systemd, python3 }: stdenv.mkDerivation rec { name = "gnome-logs-${version}"; - version = "3.28.2"; + version = "3.28.3"; src = fetchurl { url = "mirror://gnome/sources/gnome-logs/${gnome3.versionBranch version}/${name}.tar.xz"; - sha256 = "0qqmw55rrxdz2n9xwn85nm7j9y9i85fxlxjfgv683mbpdyv0gbg0"; + sha256 = "1bpg8172f16sgbhsn2sis3xh2ylrv8vj7j12xdxkmsmfh2k2bqfy"; }; - configureFlags = [ "--disable-tests" ]; + patches = [ + # Fix post_install script + (fetchpatch { + url = https://gitlab.gnome.org/GNOME/gnome-logs/commit/2f498464ac539fdf98199294bfb9205436b9c323.patch; + sha256 = "1v6d8zgd31waliwlvk5xlfjap5h84bpqb1az0wdjm4c2a53iiwlp"; + }) + # Fix a typo in manpage generation + (fetchpatch { + url = https://gitlab.gnome.org/GNOME/gnome-logs/commit/02b782fcd64d4773e2dadbdb9ea74bf3923003b3.patch; + sha256 = "1a8zcp62shspw45s0dvi2iv83qppz4hcw31id6zlwq0dp94vvb46"; + }) + ]; - nativeBuildInputs = [ pkgconfig wrapGAppsHook gettext itstool libxml2 libxslt docbook_xsl docbook_xml_dtd_43 ]; - buildInputs = [ gtk3 systemd gnome3.gsettings-desktop-schemas gnome3.defaultIconTheme ]; + mesonFlags = [ + "-Dtests=true" + "-Dman=true" + ]; + + nativeBuildInputs = [ + (python3.withPackages (pkgs: with pkgs; [ dogtail ])) + meson ninja pkgconfig wrapGAppsHook gettext itstool desktop-file-utils + libxml2 libxslt docbook_xsl docbook_xml_dtd_43 + ]; + buildInputs = [ glib gtk3 systemd gnome3.gsettings-desktop-schemas gnome3.defaultIconTheme ]; + + postPatch = '' + chmod +x meson_post_install.py + patchShebangs meson_post_install.py + ''; + + doCheck = true; passthru = { updateScript = gnome3.updateScript { diff --git a/pkgs/desktops/gnome-3/core/gnome-calculator/default.nix b/pkgs/desktops/gnome-3/core/gnome-calculator/default.nix index 03fdf4b14fe0..794f37fcbbdc 100644 --- a/pkgs/desktops/gnome-3/core/gnome-calculator/default.nix +++ b/pkgs/desktops/gnome-3/core/gnome-calculator/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { name = "gnome-calculator-${version}"; - version = "3.28.1"; + version = "3.28.2"; src = fetchurl { url = "mirror://gnome/sources/gnome-calculator/${gnome3.versionBranch version}/${name}.tar.xz"; - sha256 = "05zpdp9mkfjz22hs7hfjikkxhzmvy02mxrldrjxsv8ff17w9xvic"; + sha256 = "0izsrqc9fm2lh25jr3nzi94p5hh2d3cklxqczbq16by85wr1xm5s"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/gnome-3/default.nix b/pkgs/desktops/gnome-3/default.nix index c035dc408dc0..6605d15a697e 100644 --- a/pkgs/desktops/gnome-3/default.nix +++ b/pkgs/desktops/gnome-3/default.nix @@ -1,18 +1,6 @@ { pkgs, lib }: -let - - pkgsFun = overrides: - let - self = self_ // overrides; - self_ = with self; { - - overridePackages = f: - let newself = pkgsFun (f newself self); - in newself; - - callPackage = pkgs.newScope self; - +lib.makeScope pkgs.newScope (self: with self; { # Convert a version to branch (3.26.18 → 3.26) # Used for finding packages on GNOME mirrors versionBranch = version: builtins.concatStringsSep "." (lib.take 2 (lib.splitString "." version)); @@ -431,7 +419,4 @@ let yelp_xsl = yelp-xsl; # added 2018-02-25 yelp_tools = yelp-tools; # added 2018-02-25 - }; - in self; # pkgsFun - -in pkgsFun {} +}) diff --git a/pkgs/desktops/lxqt/core/pcmanfm-qt/default.nix b/pkgs/desktops/lxqt/core/pcmanfm-qt/default.nix index d9e2a651c3a8..d51e27409649 100644 --- a/pkgs/desktops/lxqt/core/pcmanfm-qt/default.nix +++ b/pkgs/desktops/lxqt/core/pcmanfm-qt/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "pcmanfm-qt"; - version = "0.12.0"; + version = "0.13.0"; src = fetchFromGitHub { owner = "lxde"; repo = pname; rev = version; - sha256 = "050h5w1wph35l5m69qbxzvc96y7y0bg1m7flqdadrp688pbnzcxb"; + sha256 = "0xnhdxx45fmbi5dqic3j2f7yq01s0xysimafj5zqs0a29zw3i4m0"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/mate/mate-utils/default.nix b/pkgs/desktops/mate/mate-utils/default.nix index f96eecb0a4e6..8ea8ab33700c 100644 --- a/pkgs/desktops/mate/mate-utils/default.nix +++ b/pkgs/desktops/mate/mate-utils/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "mate-utils-${version}"; - version = "1.20.0"; + version = "1.20.1"; src = fetchurl { url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz"; - sha256 = "10a6k8gi7cajlkbj1jbvk3s633hw58lan3rc85v8jlrkwm7wmhpl"; + sha256 = "1kr0612h6r2gj3yg4ccyzr844lh640cd4wdj3gl8qzqikjx0n7ka"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/mate/mozo/default.nix b/pkgs/desktops/mate/mozo/default.nix index e98d16d774e2..387df5d45b3d 100644 --- a/pkgs/desktops/mate/mozo/default.nix +++ b/pkgs/desktops/mate/mozo/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "mozo-${version}"; - version = "1.20.0"; + version = "1.20.1"; src = fetchurl { url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz"; - sha256 = "1108avdappfjadd46ld7clhh5m9f4b5khl5y33l377m8ky9dy87g"; + sha256 = "16rkwbq385i2acll0kcsnp4ghdyljylhp06bjdsvbwv6bjspyyrp"; }; pythonPath = [ mate.mate-menus pythonPackages.pygobject3 ]; diff --git a/pkgs/desktops/mate/pluma/default.nix b/pkgs/desktops/mate/pluma/default.nix index c1b57504317d..9dd992c4699f 100644 --- a/pkgs/desktops/mate/pluma/default.nix +++ b/pkgs/desktops/mate/pluma/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "pluma-${version}"; - version = "1.21.0"; + version = "1.21.1"; src = fetchurl { url = "http://pub.mate-desktop.org/releases/${mate.getRelease version}/${name}.tar.xz"; - sha256 = "1y3zl0rzp069pix1vgrhzkkfc3lvhq9ahfgbmc88cwqw9aw3mgk0"; + sha256 = "0sc69bz0h3f4cpgkyda9fnpjfkvbc20ldh6v3jj8fd3n460bc8ai"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/plasma-5/fetch.sh b/pkgs/desktops/plasma-5/fetch.sh index 7635f151c55f..9e5faf96de29 100644 --- a/pkgs/desktops/plasma-5/fetch.sh +++ b/pkgs/desktops/plasma-5/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/plasma/5.13.0/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/plasma/5.13.2/ -A '*.tar.xz' ) diff --git a/pkgs/desktops/plasma-5/srcs.nix b/pkgs/desktops/plasma-5/srcs.nix index 7daf81e64ec9..966237b73a82 100644 --- a/pkgs/desktops/plasma-5/srcs.nix +++ b/pkgs/desktops/plasma-5/srcs.nix @@ -3,363 +3,363 @@ { bluedevil = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/bluedevil-5.13.0.tar.xz"; - sha256 = "1aikg2nlhkzasliiyqa0ijk78mpa1lrpgl7gqh3lva3dvq7w9v3m"; - name = "bluedevil-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/bluedevil-5.13.2.tar.xz"; + sha256 = "16ip2myq0s5d1yjipr0k0cvbq22mc668pms33qhs2836mqxq4c87"; + name = "bluedevil-5.13.2.tar.xz"; }; }; breeze = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/breeze-5.13.0.tar.xz"; - sha256 = "0aaih84h8bh6ljcw6fk7nl4wpvcnk6vqz65s0b1qb8y7q6xr6cd0"; - name = "breeze-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/breeze-5.13.2.tar.xz"; + sha256 = "1yl41rjh2qmplny6x9hm885mwsfn6w5asw8dkp7rk0qpyb607jkq"; + name = "breeze-5.13.2.tar.xz"; }; }; breeze-grub = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/breeze-grub-5.13.0.tar.xz"; - sha256 = "0q0a8ijg7npw5nl20xnna26jvrqdvmil1z7jmc8awdy3bhyi47n6"; - name = "breeze-grub-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/breeze-grub-5.13.2.tar.xz"; + sha256 = "1j2lh8prbdivy7vlv3iyizgkmsc2qwpjkivyn9b9r6gpp0ii0dwk"; + name = "breeze-grub-5.13.2.tar.xz"; }; }; breeze-gtk = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/breeze-gtk-5.13.0.tar.xz"; - sha256 = "131fknmj1aiixzv2vqk2vza1swxcvm5haj3v9h6j3xp1l9q8rr7l"; - name = "breeze-gtk-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/breeze-gtk-5.13.2.tar.xz"; + sha256 = "12hs3nqjf20kcn18ab64qdwc8aq33l220giqfffdb7rh8n7wyknx"; + name = "breeze-gtk-5.13.2.tar.xz"; }; }; breeze-plymouth = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/breeze-plymouth-5.13.0.tar.xz"; - sha256 = "13g4dpx094x4hmhhv5ghbdf59kzlgdxb9b7dpak8bliq3npdh1ri"; - name = "breeze-plymouth-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/breeze-plymouth-5.13.2.tar.xz"; + sha256 = "18020rppw59iwqdrmm0xsmq2cl98z6m5na8walvvzvlqsskc7hh6"; + name = "breeze-plymouth-5.13.2.tar.xz"; }; }; discover = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/discover-5.13.0.tar.xz"; - sha256 = "1xg0n1za12ib70iqyxs0kcqrixxfhghi96qqs0l24cmwfca6g4km"; - name = "discover-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/discover-5.13.2.tar.xz"; + sha256 = "0jh2d9gk72fm2csf8i41hq4i0dd467m3cw5y81wbrz3k9qd3llrb"; + name = "discover-5.13.2.tar.xz"; }; }; drkonqi = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/drkonqi-5.13.0.tar.xz"; - sha256 = "0mm9bssz87camwi7zkgf0ajrnd1pb3gs044k19vgcj85g6knf1bk"; - name = "drkonqi-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/drkonqi-5.13.2.tar.xz"; + sha256 = "1zfd4pbrqp67zqmhydimqdbq49bc5b20d9z8px27l1rgj951ms2j"; + name = "drkonqi-5.13.2.tar.xz"; }; }; kactivitymanagerd = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/kactivitymanagerd-5.13.0.tar.xz"; - sha256 = "10sqzc4mhbbrzsf9bgmlssk836ylxdqvz8k8wzjsqi7r1iiqmcq6"; 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+ name = "plasma-sdk-5.13.2.tar.xz"; }; }; plasma-tests = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/plasma-tests-5.13.0.tar.xz"; - sha256 = "1cclf6cp19y4ylsgqlrq7rjvgpy59dxz91cq14d2fi93h1dcyrra"; - name = "plasma-tests-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/plasma-tests-5.13.2.tar.xz"; + sha256 = "0p7j3nhqvlywg32j627ci58ifn5zq9rgyiw0mv8gn79kghzkfc39"; + name = "plasma-tests-5.13.2.tar.xz"; }; }; plasma-vault = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/plasma-vault-5.13.0.tar.xz"; - sha256 = "1wx0jibn5fmp2ddy28azls9wb23mhpnwkvg8gihq16im62pb499i"; - name = "plasma-vault-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/plasma-vault-5.13.2.tar.xz"; + sha256 = "15w2qyjb4iab302v5n0a8xfiwj9hb62js82v17sln49axcs95xfb"; + name = "plasma-vault-5.13.2.tar.xz"; }; }; plasma-workspace = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/plasma-workspace-5.13.0.tar.xz"; - sha256 = "071za67v4d6kn4qn68r88lgwp9mchb2wh26p2mf0rmqxz3c56ihf"; - name = "plasma-workspace-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/plasma-workspace-5.13.2.tar.xz"; + sha256 = "1rjdh6ikiri6nikl5idhczlk17bzcn29m3g1c7gd67s2fglvak0p"; + name = "plasma-workspace-5.13.2.tar.xz"; }; }; plasma-workspace-wallpapers = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/plasma-workspace-wallpapers-5.13.0.tar.xz"; - sha256 = "1xnssczasr855fl5yaffs6a5dlvivrh7dvzhinfws1pk960vndyb"; - name = "plasma-workspace-wallpapers-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/plasma-workspace-wallpapers-5.13.2.tar.xz"; + sha256 = "0bx7r1xz8k1imi0h9l2rbrk68dbr9zyydj5khvpdbl81c7mmfw8r"; + name = "plasma-workspace-wallpapers-5.13.2.tar.xz"; }; }; plymouth-kcm = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/plymouth-kcm-5.13.0.tar.xz"; - sha256 = "1j7gaqypd5ijrvp4s4ry57q1lix8gfff8pxbwb7n6bnfka6hk8i6"; - name = "plymouth-kcm-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/plymouth-kcm-5.13.2.tar.xz"; + sha256 = "14n8b1ajrw8sx6b1bmlc2krsf3f6f2hwmp6rxay1bn3m3z1blndy"; + name = "plymouth-kcm-5.13.2.tar.xz"; }; }; polkit-kde-agent = { - version = "1-5.13.0"; + version = "1-5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/polkit-kde-agent-1-5.13.0.tar.xz"; - sha256 = "0sab09glz9b8i1ricww8lrvp9ivnfzh4g1nijks7f1wg8nk1vpcm"; - name = "polkit-kde-agent-1-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/polkit-kde-agent-1-5.13.2.tar.xz"; + sha256 = "1z455nh28hhh4f1wxwd6zrxcg4cfpiz02jrbbgqi7x3bflmswc2a"; + name = "polkit-kde-agent-1-5.13.2.tar.xz"; }; }; powerdevil = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/powerdevil-5.13.0.tar.xz"; - sha256 = "0w0x0lgi8xdifz811j749xbgkvqixvrpzamwv0iqn3zgg1m5b5vy"; - name = "powerdevil-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/powerdevil-5.13.2.tar.xz"; + sha256 = "0g9ag9y9pip4q5agvbmp642vjcvj9355gc1j25wh3innml6z7jp0"; + name = "powerdevil-5.13.2.tar.xz"; }; }; sddm-kcm = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/sddm-kcm-5.13.0.tar.xz"; - sha256 = "13mkd1b4c7ihp0s3n80snq70v76vs2gzvfx7f0s2pjq44q07bv5f"; - name = "sddm-kcm-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/sddm-kcm-5.13.2.tar.xz"; + sha256 = "0ya9l65i3lhk9zcnscsy1ps334k2nk7j3ixrv1xbfgr2w1plhkqx"; + name = "sddm-kcm-5.13.2.tar.xz"; }; }; systemsettings = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/systemsettings-5.13.0.tar.xz"; - sha256 = "1imnry86jz2rwwgz470h7pji2hajnj337hvxmrrlr0giijf1amlc"; - name = "systemsettings-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/systemsettings-5.13.2.tar.xz"; + sha256 = "0gzdh4cgvmbr99c96p6pw4a5l181rkpwpwfa79xm8pmr6lmcy254"; + name = "systemsettings-5.13.2.tar.xz"; }; }; user-manager = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/user-manager-5.13.0.tar.xz"; - sha256 = "10w5wr3pxlybqx192xiljni9nbqai33v5j2nvcs032i0ms7fbxpf"; - name = "user-manager-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/user-manager-5.13.2.tar.xz"; + sha256 = "1k3xkyfxs9xbgggs4ymyx1cx7fphxcnh0cfmwqdjbsa6fqjbh7jh"; + name = "user-manager-5.13.2.tar.xz"; }; }; xdg-desktop-portal-kde = { - version = "5.13.0"; + version = "5.13.2"; src = fetchurl { - url = "${mirror}/stable/plasma/5.13.0/xdg-desktop-portal-kde-5.13.0.tar.xz"; - sha256 = "13pnj7mpnv30fqwzpnjrfwmjx4isbkhlznpr6hpvsh0f178zhfz4"; - name = "xdg-desktop-portal-kde-5.13.0.tar.xz"; + url = "${mirror}/stable/plasma/5.13.2/xdg-desktop-portal-kde-5.13.2.tar.xz"; + sha256 = "1vydh7vqycd9fgkiysnz3kf4xqqkvmzr2pmhbng4yz7vy4pci981"; + name = "xdg-desktop-portal-kde-5.13.2.tar.xz"; }; }; } diff --git a/pkgs/development/compilers/ghc/8.6.1.nix b/pkgs/development/compilers/ghc/8.6.1.nix index 51b79ed6bb11..89dcec348433 100644 --- a/pkgs/development/compilers/ghc/8.6.1.nix +++ b/pkgs/development/compilers/ghc/8.6.1.nix @@ -88,8 +88,6 @@ stdenv.mkDerivation (rec { outputs = [ "out" "doc" ]; - patches = stdenv.lib.optional stdenv.isDarwin ./backport-dylib-command-size-limit.patch; - postPatch = "patchShebangs ."; # GHC is a bit confused on its cross terminology. diff --git a/pkgs/development/compilers/graalvm/default.nix b/pkgs/development/compilers/graalvm/default.nix index ff269afd1a64..794467443715 100644 --- a/pkgs/development/compilers/graalvm/default.nix +++ b/pkgs/development/compilers/graalvm/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, fetchhg, fetchurl, mercurial, python27, zlib, makeWrapper, oraclejdk8 }: +{ stdenv, lib, fetchFromGitHub, fetchhg, fetchurl, fetchzip, mercurial, python27, zlib, makeWrapper, oraclejdk8 }: let # pre-download some cache entries ('mx' will not be able to download under nixbld1) @@ -8,69 +8,84 @@ let buildCommand = '' mkdir $out ${lib.concatMapStrings ({url, name, sha1}: '' - ln -s ${fetchurl { inherit url sha1; }} $out/${name} + install -D ${fetchurl { inherit url sha1; }} $out/${name} echo -n ${sha1} > $out/${name}.sha1 '') list} ''; }; jvmci8-mxcache = [ - rec { sha1 = "66215826a684eb6866d4c14a5a4f9c344f1d1eef"; name = "JACOCOCORE_${sha1}.jar"; url = mirror://maven/org/jacoco/org.jacoco.core/0.7.9/org.jacoco.core-0.7.9.jar; } - rec { sha1 = "a365ee459836b2aa18028929923923d15f0c3af9"; name = "JACOCOCORE.sources_${sha1}.jar"; url = mirror://maven/org/jacoco/org.jacoco.core/0.7.9/org.jacoco.core-0.7.9-sources.jar; } - rec { sha1 = "8a7f78fdf2a4e58762890d8e896a9298c2980c10"; name = "JACOCOREPORT_${sha1}.jar"; url = mirror://maven/org/jacoco/org.jacoco.report/0.7.9/org.jacoco.report-0.7.9.jar; } - rec { sha1 = "e6703ef288523a8e63fa756d8adeaa70858d41b0"; name = "JACOCOREPORT.sources_${sha1}.jar"; url = mirror://maven/org/jacoco/org.jacoco.report/0.7.9/org.jacoco.report-0.7.9-sources.jar; } - rec { sha1 = "306816fb57cf94f108a43c95731b08934dcae15c"; name = "JOPTSIMPLE_4_6_${sha1}.jar"; url = mirror://maven/net/sf/jopt-simple/jopt-simple/4.6/jopt-simple-4.6.jar; } - rec { sha1 = "9cd14a61d7aa7d554f251ef285a6f2c65caf7b65"; name = "JOPTSIMPLE_4_6.sources_${sha1}.jar"; url = mirror://maven/net/sf/jopt-simple/jopt-simple/4.6/jopt-simple-4.6-sources.jar; } - rec { sha1 = "b852fb028de645ad2852bbe998e084d253f450a5"; name = "JMH_GENERATOR_ANNPROCESS_1_18_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.18/jmh-generator-annprocess-1.18.jar; } - rec { sha1 = "d455b0dc6108b5e6f1fb4f6cf1c7b4cbedbecc97"; name = "JMH_GENERATOR_ANNPROCESS_1_18.sources_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.18/jmh-generator-annprocess-1.18-sources.jar; } - rec { sha1 = "7aac374614a8a76cad16b91f1a4419d31a7dcda3"; name = "JMH_GENERATOR_ANNPROCESS_1_21_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.21/jmh-generator-annprocess-1.21.jar; } - rec { sha1 = "fb48e2a97df95f8b9dced54a1a37749d2a64d2ae"; name = "JMH_GENERATOR_ANNPROCESS_1_21.sources_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.21/jmh-generator-annprocess-1.21-sources.jar; } - rec { sha1 = "702b8525fcf81454235e5e2fa2a35f15ffc0ec7e"; name = "ASM_DEBUG_ALL_${sha1}.jar"; url = mirror://maven/org/ow2/asm/asm-debug-all/5.0.4/asm-debug-all-5.0.4.jar; } - rec { sha1 = "ec2544ab27e110d2d431bdad7d538ed509b21e62"; name = "COMMONS_MATH3_3_2_${sha1}.jar"; url = mirror://maven/org/apache/commons/commons-math3/3.2/commons-math3-3.2.jar; } - rec { sha1 = "cd098e055bf192a60c81d81893893e6e31a6482f"; name = "COMMONS_MATH3_3_2.sources_${sha1}.jar"; url = mirror://maven/org/apache/commons/commons-math3/3.2/commons-math3-3.2-sources.jar; } - rec { sha1 = "0174aa0077e9db596e53d7f9ec37556d9392d5a6"; name = "JMH_1_18_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.18/jmh-core-1.18.jar; } - rec { sha1 = "7ff1e1aafea436b6aa8b29a8b8f1c2d66be26f5b"; name = "JMH_1_18.sources_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.18/jmh-core-1.18-sources.jar; } - rec { sha1 = "442447101f63074c61063858033fbfde8a076873"; name = "JMH_1_21_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.21/jmh-core-1.21.jar; } - rec { sha1 = "a6fe84788bf8cf762b0e561bf48774c2ea74e370"; name = "JMH_1_21.sources_${sha1}.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.21/jmh-core-1.21-sources.jar; } - rec { sha1 = "2973d150c0dc1fefe998f834810d68f278ea58ec"; name = "JUNIT_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/junit-4.12.jar; } - rec { sha1 = "a6c32b40bf3d76eca54e3c601e5d1470c86fcdfa"; name = "JUNIT.sources_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/junit-4.12-sources.jar; } - rec { sha1 = "42a25dc3219429f0e5d060061f71acb49bf010a0"; name = "HAMCREST_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/hamcrest-core-1.3.jar; } - rec { sha1 = "1dc37250fbc78e23a65a67fbbaf71d2e9cbc3c0b"; name = "HAMCREST.sources_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/hamcrest-core-1.3-sources.jar; } - rec { sha1 = "0d031013db9a80d6c88330c42c983fbfa7053193"; name = "hsdis_${sha1}.so"; url = https://lafo.ssw.uni-linz.ac.at/pub/hsdis/intel/hsdis-amd64-linux-0d031013db9a80d6c88330c42c983fbfa7053193.so; } + rec { sha1 = "66215826a684eb6866d4c14a5a4f9c344f1d1eef"; name = "JACOCOCORE_${sha1}/jacococore.jar"; url = mirror://maven/org/jacoco/org.jacoco.core/0.7.9/org.jacoco.core-0.7.9.jar; } + rec { sha1 = "a365ee459836b2aa18028929923923d15f0c3af9"; name = "JACOCOCORE_${sha1}/jacococore.sources.jar"; url = mirror://maven/org/jacoco/org.jacoco.core/0.7.9/org.jacoco.core-0.7.9-sources.jar; } + rec { sha1 = "8a7f78fdf2a4e58762890d8e896a9298c2980c10"; name = "JACOCOREPORT_${sha1}/jacocoreport.jar"; url = mirror://maven/org/jacoco/org.jacoco.report/0.7.9/org.jacoco.report-0.7.9.jar; } + rec { sha1 = "e6703ef288523a8e63fa756d8adeaa70858d41b0"; name = "JACOCOREPORT_${sha1}/jacocoreport.sources.jar"; url = mirror://maven/org/jacoco/org.jacoco.report/0.7.9/org.jacoco.report-0.7.9-sources.jar; } + rec { sha1 = "306816fb57cf94f108a43c95731b08934dcae15c"; name = "JOPTSIMPLE_4_6_${sha1}/joptsimple-4-6.jar"; url = mirror://maven/net/sf/jopt-simple/jopt-simple/4.6/jopt-simple-4.6.jar; } + rec { sha1 = "9cd14a61d7aa7d554f251ef285a6f2c65caf7b65"; name = "JOPTSIMPLE_4_6_${sha1}/joptsimple-4-6.sources.jar"; url = mirror://maven/net/sf/jopt-simple/jopt-simple/4.6/jopt-simple-4.6-sources.jar; } + rec { sha1 = "b852fb028de645ad2852bbe998e084d253f450a5"; name = "JMH_GENERATOR_ANNPROCESS_1_18_${sha1}/jmh-generator-annprocess-1-18.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.18/jmh-generator-annprocess-1.18.jar; } + rec { sha1 = "d455b0dc6108b5e6f1fb4f6cf1c7b4cbedbecc97"; name = "JMH_GENERATOR_ANNPROCESS_1_18_${sha1}/jmh-generator-annprocess-1-18.sources.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.18/jmh-generator-annprocess-1.18-sources.jar; } + rec { sha1 = "7aac374614a8a76cad16b91f1a4419d31a7dcda3"; name = "JMH_GENERATOR_ANNPROCESS_1_21_${sha1}/jmh-generator-annprocess-1-21.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.21/jmh-generator-annprocess-1.21.jar; } + rec { sha1 = "fb48e2a97df95f8b9dced54a1a37749d2a64d2ae"; name = "JMH_GENERATOR_ANNPROCESS_1_21_${sha1}/jmh-generator-annprocess-1-21.sources.jar"; url = mirror://maven/org/openjdk/jmh/jmh-generator-annprocess/1.21/jmh-generator-annprocess-1.21-sources.jar; } + rec { sha1 = "702b8525fcf81454235e5e2fa2a35f15ffc0ec7e"; name = "ASM_DEBUG_ALL_${sha1}/asm-debug-all.jar"; url = mirror://maven/org/ow2/asm/asm-debug-all/5.0.4/asm-debug-all-5.0.4.jar; } + rec { sha1 = "ec2544ab27e110d2d431bdad7d538ed509b21e62"; name = "COMMONS_MATH3_3_2_${sha1}/commons-math3-3-2.jar"; url = mirror://maven/org/apache/commons/commons-math3/3.2/commons-math3-3.2.jar; } + rec { sha1 = "cd098e055bf192a60c81d81893893e6e31a6482f"; name = "COMMONS_MATH3_3_2_${sha1}/commons-math3-3-2.sources.jar"; url = mirror://maven/org/apache/commons/commons-math3/3.2/commons-math3-3.2-sources.jar; } + rec { sha1 = "0174aa0077e9db596e53d7f9ec37556d9392d5a6"; name = "JMH_1_18_${sha1}/jmh-1-18.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.18/jmh-core-1.18.jar; } + rec { sha1 = "7ff1e1aafea436b6aa8b29a8b8f1c2d66be26f5b"; name = "JMH_1_18_${sha1}/jmh-1-18.sources.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.18/jmh-core-1.18-sources.jar; } + rec { sha1 = "442447101f63074c61063858033fbfde8a076873"; name = "JMH_1_21_${sha1}/jmh-1-21.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.21/jmh-core-1.21.jar; } + rec { sha1 = "a6fe84788bf8cf762b0e561bf48774c2ea74e370"; name = "JMH_1_21_${sha1}/jmh-1-21.sources.jar"; url = mirror://maven/org/openjdk/jmh/jmh-core/1.21/jmh-core-1.21-sources.jar; } + rec { sha1 = "2973d150c0dc1fefe998f834810d68f278ea58ec"; name = "JUNIT_${sha1}/junit.jar"; url = mirror://maven/junit/junit/4.12/junit-4.12.jar; } + rec { sha1 = "a6c32b40bf3d76eca54e3c601e5d1470c86fcdfa"; name = "JUNIT_${sha1}/junit.sources.jar"; url = mirror://maven/junit/junit/4.12/junit-4.12-sources.jar; } + rec { sha1 = "42a25dc3219429f0e5d060061f71acb49bf010a0"; name = "HAMCREST_${sha1}/hamcrest.jar"; url = mirror://maven/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar; } + rec { sha1 = "1dc37250fbc78e23a65a67fbbaf71d2e9cbc3c0b"; name = "HAMCREST_${sha1}/hamcrest.sources.jar"; url = mirror://maven/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3-sources.jar; } + rec { sha1 = "0d031013db9a80d6c88330c42c983fbfa7053193"; name = "jvmci/intel-hsdis-amd64-linux-${sha1}.so"; url = "https://lafo.ssw.uni-linz.ac.at/pub/hsdis/intel/hsdis-amd64-linux-${sha1}.so"; } ]; graal-mxcache = jvmci8-mxcache ++ [ - rec { sha1 = "f2cfb09cee12469ff64f0d698b13de19903bb4f7"; name = "NanoHTTPD-WebSocket_${sha1}.jar"; url = mirror://maven/org/nanohttpd/nanohttpd-websocket/2.3.1/nanohttpd-websocket-2.3.1.jar; } - rec { sha1 = "a8d54d1ca554a77f377eff6bf9e16ca8383c8f6c"; name = "NanoHTTPD_${sha1}.jar"; url = mirror://maven/org/nanohttpd/nanohttpd/2.3.1/nanohttpd-2.3.1.jar; } - rec { sha1 = "aca5eb39e2a12fddd6c472b240afe9ebea3a6733"; name = "org.json_${sha1}.jar"; url = mirror://maven/org/json/json/20160810/json-20160810.jar; } - rec { sha1 = "fdedd5f2522122102f0b3db85fe7aa563a009926"; name = "JLINE_${sha1}.jar"; url = mirror://maven/jline/jline/2.14.5/jline-2.14.5.jar; } - rec { sha1 = "476d9a44cd19d6b55f81571077dfa972a4f8a083"; name = "JAVA_ALLOCATION_INSTRUMENTER_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/java-allocation-instrumenter/java-allocation-instrumenter-8f0db117e64e.jar; } - rec { sha1 = "0da08b8cce7bbf903602a25a3a163ae252435795"; name = "ASM5_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/asm-5.0.4.jar; } - rec { sha1 = "396ce0c07ba2b481f25a70195c7c94922f0d1b0b"; name = "ASM_TREE5_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/asm-tree-5.0.4.jar; } - rec { sha1 = "280c265b789e041c02e5c97815793dfc283fb1e6"; name = "LIBFFI_${sha1}.tar.gz"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/libffi-3.2.1.tar.gz; } - rec { sha1 = "616a4fca49c5d610a3354e78cd97e7627024bb66"; name = "GSON_SHADOWED_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/gson-shadowed-2.2.4.jar; } - rec { sha1 = "b13337a4ffd095c2e27ea401dc6edfca0d23a6e4"; name = "GSON_SHADOWED.sources_${sha1}.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/gson-shadowed-2.2.4-sources.jar; } + rec { sha1 = "f2cfb09cee12469ff64f0d698b13de19903bb4f7"; name = "NanoHTTPD-WebSocket_${sha1}/nanohttpd-websocket.jar"; url = mirror://maven/org/nanohttpd/nanohttpd-websocket/2.3.1/nanohttpd-websocket-2.3.1.jar; } + rec { sha1 = "a8d54d1ca554a77f377eff6bf9e16ca8383c8f6c"; name = "NanoHTTPD_${sha1}/nanohttpd.jar"; url = mirror://maven/org/nanohttpd/nanohttpd/2.3.1/nanohttpd-2.3.1.jar; } + rec { sha1 = "30b13b7efc55b7feea667691509cf59902375001"; name = "ANTLR4_${sha1}/antlr4.jar"; url = mirror://maven/org/antlr/antlr4-runtime/4.7/antlr4-runtime-4.7.jar; } + rec { sha1 = "fdedd5f2522122102f0b3db85fe7aa563a009926"; name = "JLINE_${sha1}/jline.jar"; url = mirror://maven/jline/jline/2.14.5/jline-2.14.5.jar; } + rec { sha1 = "d0bdc21c5e6404726b102998e44c66a738897905"; name = "JAVA_ALLOCATION_INSTRUMENTER_${sha1}/java-allocation-instrumenter.jar"; url = mirror://maven/com/google/code/java-allocation-instrumenter/java-allocation-instrumenter/3.1.0/java-allocation-instrumenter-3.1.0.jar; } + rec { sha1 = "0da08b8cce7bbf903602a25a3a163ae252435795"; name = "ASM5_${sha1}/asm5.jar"; url = mirror://maven/org/ow2/asm/asm/5.0.4/asm-5.0.4.jar; } + rec { sha1 = "396ce0c07ba2b481f25a70195c7c94922f0d1b0b"; name = "ASM_TREE5_${sha1}/asm-tree5.jar"; url = mirror://maven/org/ow2/asm/asm-tree/5.0.4/asm-tree-5.0.4.jar; } + rec { sha1 = "280c265b789e041c02e5c97815793dfc283fb1e6"; name = "LIBFFI_${sha1}/libffi.tar.gz"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/libffi-3.2.1.tar.gz; } + rec { sha1 = "8819cea8bfe22c9c63f55465e296b3855ea41786"; name = "TruffleJSON_${sha1}/trufflejson.jar"; url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/trufflejson-20180130.jar; } + rec { sha1 = "9712a8124c40298015f04a74f61b3d81a51513af"; name = "CHECKSTYLE_8.8_${sha1}/checkstyle-8.8.jar"; url = https://github.com/graalvm/mx/releases/download/checkstyle-8.8/checkstyle-8.8-all.jar; } ]; + findbugs = fetchzip { + name = "findbugs-3.0.0"; + url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/findbugs-3.0.0.zip; + sha256 = "0sf5f9h1s6fmhfigjy81i109j1ani5kzdr4njlpq0mnkkh9fpr7m"; + }; + in rec { mx = stdenv.mkDerivation rec { - version = "5.171.0"; + version = "5.176.4"; name = "mx"; src = fetchFromGitHub { owner = "graalvm"; repo = "mx"; rev = version; - sha256 = "0ag3g49fnjrnlmjb55dbn9l2cwyvanx36f5hyf21ad8px05fh6jv"; + sha256 = "0xmx4hpnd6m9hk49lgwnvwd0q11s2m4d8axwq7zzc8wm10d692xw"; }; nativeBuildInputs = [ makeWrapper ]; buildPhase = '' substituteInPlace mx --replace /bin/pwd pwd + + # forbid network access while simulate success for passing obligatory "VerifyLibraryURL" + substituteInPlace mx.py --replace \ + 'def download(path, urls, verbose=False, abortOnError=True, verifyOnly=False):' \ + 'def download(path, urls, verbose=False, abortOnError=True, verifyOnly=False): + print("FAKE download(path={} urls={} verbose={} abortOnError={} verifyOnly={})".format(path, urls, verbose, abortOnError, verifyOnly)) + return True' ''; installPhase = '' mkdir -p $out/bin cp -dpR * $out/bin - wrapProgram $out/bin/mx --prefix PATH : ${lib.makeBinPath [ python27 mercurial ]} + wrapProgram $out/bin/mx \ + --prefix PATH : ${lib.makeBinPath [ python27 mercurial ]} \ + --set FINDBUGS_HOME ${findbugs} ''; meta = with stdenv.lib; { homepage = https://github.com/graalvm/mx; @@ -82,7 +97,7 @@ in rec { # copy of pkgs.oraclejvm8 with JVMCI interface (TODO: it should work with pkgs.openjdk8 too) jvmci8 = stdenv.mkDerivation rec { - version = "0.43"; + version = "0.45"; name = let n = "jvmci8u171-${version}"; in if (lib.stringLength n) == (lib.stringLength oraclejdk8.name) then @@ -93,7 +108,7 @@ in rec { owner = "graalvm"; repo = "graal-jvmci-8"; rev = "jvmci-${version}"; - sha256 = "0jkp67m7s252kngxnj0yp397pgx5z95v1lbi68v9g4dw050l28rk"; + sha256 = "1nppk9dpamisiadss1iy82i3rf6igndbf1vax85w9lz310kh0d12"; }; buildInputs = [ mx mercurial ]; postUnpack = '' @@ -122,6 +137,8 @@ in rec { installPhase = '' mv jdk1.8.0_*/linux-amd64/product $out find $out -type f -exec sed -i "s#${oraclejdk8}#$out#g" {} \; + + install -v -m0555 -D $MX_CACHE_DIR/jvmci/*hsdis*.so $out/jre/lib/amd64/hsdis-amd64.so ''; dontFixup = true; # do not nuke path of ffmpeg etc dontStrip = true; # why? see in oraclejdk derivation @@ -129,7 +146,7 @@ in rec { }; graalvm8 = stdenv.mkDerivation rec { - version = "1.0.0-rc1"; + version = "1.0.0-rc3"; name = let n = "graal-${version}"; in if (lib.stringLength n) == (lib.stringLength jvmci8.name) then @@ -140,7 +157,7 @@ in rec { owner = "oracle"; repo = "graal"; rev = "vm-${version}"; - sha256 = "1j1m53d8x0mkvqr9lwlkjddfha5jrsq9hxlblbjv1bqcivfmmfn7"; + sha256 = "1hcs4m6ailapgi3bikav1i517vqn5pn595cyqqjfvlnkjwihbnc3"; }; buildInputs = [ mx zlib mercurial jvmci8 ]; postUnpack = '' @@ -161,20 +178,42 @@ in rec { export MX_ALT_OUTPUT_ROOT=$NIX_BUILD_TOP/mxbuild export MX_CACHE_DIR=${makeMxCache graal-mxcache} - ( cd substratevm; mx --java-home $out build --no-daemon ) + ( cd substratevm + + mkdir -p clibraries + mx --java-home $out build + + # bootstrap native-image (that was removed from mx build in https://github.com/oracle/graal/commit/140d7a7edf54ec5872a8ff45869cd1ae499efde4) + mx --java-home $out native-image -cp $MX_ALT_OUTPUT_ROOT/substratevm/dists/svm-driver.jar com.oracle.svm.driver.NativeImage + ) + ( cd tools + mx --java-home $out build + ) ''; installPhase = '' - # add graal files - mkdir -p $out/jre/tools/{profiler,chromeinspector} - cp -pR substratevm/svmbuild/native-image-root/linux-amd64/bin/* $out/jre/bin/ - cp -pLR substratevm/svmbuild/native-image-root/lib/* $out/jre/lib/ || true # ignore "same file" error when dereferencing symlinks - cp -pLR substratevm/svmbuild/native-image-root/tools/* $out/jre/tools/ - cp -pR $MX_ALT_OUTPUT_ROOT/truffle/dists/* $out/jre/lib/truffle/ - cp -pR $MX_ALT_OUTPUT_ROOT/tools/dists/truffle-profiler* $out/jre/tools/profiler/ - cp -pR $MX_ALT_OUTPUT_ROOT/tools/dists/chromeinspector* $out/jre/tools/chromeinspector/ - echo "name=GraalVM ${version}" > $out/jre/lib/amd64/server/vm.properties - ln -s --relative $out/jre/bin/native-image $out/bin/native-image - cp -dpR $out/jre/lib/svm/clibraries $out/jre/lib/svm/builder/ + # add graal files modelling after directory structure of "graalvm-ce" binary distribution + mkdir -p $out/jre/tools/{profiler,chromeinspector,truffle/builder} $out/jre/lib/{graal,include,truffle/include} + cp -vpLR substratevm/svmbuild/native-image-root/lib/* $out/jre/lib/ || true # ignore "same file" error when dereferencing symlinks + cp -vp $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/bin/* $out/jre/lib/amd64/ + cp -vp $MX_ALT_OUTPUT_ROOT/compiler/dists/graal-*processor*.jar $out/jre/lib/graal/ + cp -vp $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/include/* $out/jre/lib/include/ + cp -vp $MX_ALT_OUTPUT_ROOT/compiler/dists/graal-management.jar $out/jre/lib/jvmci/ + cp -vdpR $out/jre/lib/svm/clibraries $out/jre/lib/svm/builder/ + cp -vpR $MX_ALT_OUTPUT_ROOT/truffle/dists/* $out/jre/lib/truffle/ + cp -vp $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/include/* $out/jre/lib/truffle/include/ + cp -vpLR substratevm/svmbuild/native-image-root/tools/* $out/jre/tools/ + cp -vpR $MX_ALT_OUTPUT_ROOT/tools/dists/chromeinspector* $out/jre/tools/chromeinspector/ + cp -vpR $MX_ALT_OUTPUT_ROOT/tools/dists/truffle-profiler* $out/jre/tools/profiler/ + cp -vpR $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/* $out/jre/tools/truffle/ + cp -vp $MX_ALT_OUTPUT_ROOT/truffle/dists/truffle-nfi.jar $out/jre/tools/truffle/builder/ + + echo "name=GraalVM ${version}" > $out/jre/lib/amd64/server/vm.properties + echo -n "graal" > $out/jre/lib/jvmci/compiler-name + echo -n "../truffle/truffle-api.jar:../truffle/truffle-nfi.jar" > $out/jre/lib/jvmci/parentClassLoader.classpath + + install -v -m0555 -D substratevm/com.oracle.svm.driver.nativeimage $out/jre/lib/svm/bin/native-image + ln -s ../lib/svm/bin/native-image $out/jre/bin/native-image + ln -s ../jre/bin/native-image $out/bin/native-image # BUG workaround http://mail.openjdk.java.net/pipermail/graal-dev/2017-December/005141.html substituteInPlace $out/jre/lib/security/java.security \ diff --git a/pkgs/development/compilers/kotlin/default.nix b/pkgs/development/compilers/kotlin/default.nix index 342051230030..89c6151a186b 100644 --- a/pkgs/development/compilers/kotlin/default.nix +++ b/pkgs/development/compilers/kotlin/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchurl, makeWrapper, jre, unzip }: let - version = "1.2.50"; + version = "1.2.51"; in stdenv.mkDerivation rec { inherit version; name = "kotlin-${version}"; src = fetchurl { url = "https://github.com/JetBrains/kotlin/releases/download/v${version}/kotlin-compiler-${version}.zip"; - sha256 = "1abis73ij334vfwn9k4s9rsa1va7h31a9g97g84i2rrp7cq2q1mw"; + sha256 = "0b7rlv4w3bqfxwp0sici8lraskavmx08qgf1jddjcgaxh0f72x4a"; }; propagatedBuildInputs = [ jre ] ; diff --git a/pkgs/development/compilers/mint/crystal2nix.cr b/pkgs/development/compilers/mint/crystal2nix.cr index f2ef5dafdbc3..9b84b20d03a3 100644 --- a/pkgs/development/compilers/mint/crystal2nix.cr +++ b/pkgs/development/compilers/mint/crystal2nix.cr @@ -5,16 +5,23 @@ class PrefetchJSON JSON.mapping(sha256: String) end +class ShardLock + YAML.mapping( + version: String, + shards: Hash(String, Hash(String, String)) + ) +end + File.open "shards.nix", "w+" do |file| file.puts %({) - yaml = YAML.parse(File.read("shard.lock")) - yaml["shards"].as_h.each do |key, value| - owner, repo = value["github"].as_s.split("/") + yaml = ShardLock.from_yaml(File.read("shard.lock")) + yaml.shards.each do |key, value| + owner, repo = value["github"].split("/") url = "https://github.com/#{value["github"]}" rev = if value["version"]? "v#{value["version"]}" else - value["commit"].as_s + value["commit"] end sha256 = "" diff --git a/pkgs/development/compilers/mint/default.nix b/pkgs/development/compilers/mint/default.nix index 40527e879215..0e558e766f77 100644 --- a/pkgs/development/compilers/mint/default.nix +++ b/pkgs/development/compilers/mint/default.nix @@ -28,21 +28,19 @@ let }; in stdenv.mkDerivation rec { - version = "0.0.4"; + version = "0.1.0"; name = "mint-${version}"; src = fetchFromGitHub { owner = "mint-lang"; repo = "mint"; - rev = "0.0.4"; - sha256 = "04zq6qqh2dbqgnywsy6qfpimsr2zg19gs3xls1bphbaygnb2yi3l"; + rev = "0.1.0"; + sha256 = "0n9lnkm2k8lv3wcw0jc7bcpgvcjyp3a8cywn0w7ipb22q8cl0n96"; }; buildInputs = [ crystal zlib openssl duktape ]; buildPhase = '' - mkdir -p $out/bin - - mkdir tmp + mkdir -p $out/bin tmp cd tmp ln -s ${crystalLib} lib cp -r $src/* . diff --git a/pkgs/development/compilers/openjdk/10.nix b/pkgs/development/compilers/openjdk/10.nix index 7882fa49b07e..2c76d59512b6 100644 --- a/pkgs/development/compilers/openjdk/10.nix +++ b/pkgs/development/compilers/openjdk/10.nix @@ -1,6 +1,6 @@ { stdenv, lib, fetchurl, bash, cpio, pkgconfig, file, which, unzip, zip, cups, freetype , alsaLib, bootjdk, cacert, perl, liberation_ttf, fontconfig, zlib, lndir -, libX11, libICE, libXrender, libXext, libXt, libXtst, libXi, libXinerama, libXcursor +, libX11, libICE, libXrender, libXext, libXt, libXtst, libXi, libXinerama, libXcursor, libXrandr , libjpeg, giflib , setJavaClassPath , minimal ? false @@ -36,7 +36,7 @@ let buildInputs = [ cpio file which unzip zip perl bootjdk zlib cups freetype alsaLib libjpeg giflib libX11 libICE libXext libXrender libXtst libXt libXtst - libXi libXinerama libXcursor lndir fontconfig + libXi libXinerama libXcursor libXrandr lndir fontconfig ] ++ lib.optionals (!minimal && enableGnome2) [ gtk3 gnome_vfs GConf glib ]; diff --git a/pkgs/development/compilers/openjdk/8.nix b/pkgs/development/compilers/openjdk/8.nix index 9db5e8ba23c9..57771e383279 100644 --- a/pkgs/development/compilers/openjdk/8.nix +++ b/pkgs/development/compilers/openjdk/8.nix @@ -1,6 +1,6 @@ { stdenv, lib, fetchurl, bash, cpio, pkgconfig, file, which, unzip, zip, cups, freetype , alsaLib, bootjdk, cacert, perl, liberation_ttf, fontconfig, zlib, lndir -, libX11, libICE, libXrender, libXext, libXt, libXtst, libXi, libXinerama, libXcursor +, libX11, libICE, libXrender, libXext, libXt, libXtst, libXi, libXinerama, libXcursor, libXrandr , libjpeg, giflib , setJavaClassPath , minimal ? false @@ -70,7 +70,7 @@ let buildInputs = [ cpio file which unzip zip perl bootjdk zlib cups freetype alsaLib libjpeg giflib libX11 libICE libXext libXrender libXtst libXt libXtst - libXi libXinerama libXcursor lndir fontconfig + libXi libXinerama libXcursor libXrandr lndir fontconfig ] ++ lib.optionals (!minimal && enableGnome2) [ gtk2 gnome_vfs GConf glib ]; diff --git a/pkgs/development/compilers/seexpr/default.nix b/pkgs/development/compilers/seexpr/default.nix index 2760d6ad5d03..a6abe6791d7e 100644 --- a/pkgs/development/compilers/seexpr/default.nix +++ b/pkgs/development/compilers/seexpr/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, cmake, libpng, zlib, qt4, -bison, flex, mesa_glu, pythonPackages +bison, flex, libGLU, pythonPackages }: stdenv.mkDerivation rec { @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { sha256 = "0a44k56jf6dl36fwgg4zpc252wq5lf9cblg74mp73k82hxw439l4"; }; - buildInputs = [ cmake mesa_glu libpng zlib qt4 pythonPackages.pyqt4 bison flex ]; + buildInputs = [ cmake libGLU libpng zlib qt4 pythonPackages.pyqt4 bison flex ]; meta = with stdenv.lib; { description = "Embeddable expression evaluation engine from Disney Animation"; homepage = https://www.disneyanimation.com/technology/seexpr.html; diff --git a/pkgs/development/compilers/wcc/default.nix b/pkgs/development/compilers/wcc/default.nix new file mode 100644 index 000000000000..8cb1e8e5f2cd --- /dev/null +++ b/pkgs/development/compilers/wcc/default.nix @@ -0,0 +1,49 @@ +{ stdenv, fetchFromGitHub, capstone, libbfd, libelf, libiberty, readline }: + +stdenv.mkDerivation rec { + name = "wcc-unstable-${version}"; + version = "2018-04-05"; + + src = fetchFromGitHub { + owner = "endrazine"; + repo = "wcc"; + rev = "f141963ff193d7e1931d41acde36d20d7221e74f"; + sha256 = "1f0w869x0176n5nsq7m70r344gv5qvfmk7b58syc0jls8ghmjvb4"; + fetchSubmodules = true; + }; + + buildInputs = [ capstone libbfd libelf libiberty readline ]; + + postPatch = '' + sed -i src/wsh/include/libwitch/wsh.h src/wsh/scripts/INDEX \ + -e "s#/usr/share/wcc#$out/share/wcc#" + ''; + + installFlags = [ "DESTDIR=$(out)" ]; + + preInstall = '' + mkdir -p $out/usr/bin + ''; + + postInstall = '' + mv $out/usr/* $out + rmdir $out/usr + mkdir -p $out/share/man/man1 + cp doc/manpages/*.1 $out/share/man/man1/ + ''; + + preFixup = '' + # Let patchShebangs rewrite shebangs with wsh. + PATH+=:$out/bin + ''; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = https://github.com/endrazine/wcc; + description = "Witchcraft compiler collection: tools to convert and script ELF files"; + license = licenses.mit; + platforms = [ "x86_64-linux" ]; + maintainers = with maintainers; [ orivej ]; + }; +} diff --git a/pkgs/development/coq-modules/equations/default.nix b/pkgs/development/coq-modules/equations/default.nix index 1867d9605661..fa17d37b4bd3 100644 --- a/pkgs/development/coq-modules/equations/default.nix +++ b/pkgs/development/coq-modules/equations/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, coq }: -let param = - { +let + params = { "8.6" = { version = "1.0"; rev = "v1.0"; @@ -14,8 +14,14 @@ let param = sha256 = "1bavg4zl1xn0jqrdq8iw7xqzdvdf39ligj9saz5m9c507zri952h"; }; - }."${coq.coq-version}" -; in + "8.8" = { + version = "1.0"; + rev = "v1.0-8.8"; + sha256 = "0dd7zd5j2sv5cw3mfwg33ss2vcj634q3qykakc41sv7f3rfgqfnn"; + }; + }; + param = params."${coq.coq-version}"; +in stdenv.mkDerivation rec { @@ -43,7 +49,7 @@ stdenv.mkDerivation rec { }; passthru = { - compatibleCoqVersions = v: builtins.elem v [ "8.6" "8.7" ]; + compatibleCoqVersions = v: builtins.hasAttr v params; }; } diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 966334f1e45c..c3b04c22c2aa 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -665,7 +665,7 @@ self: super: { # Need newer versions of their dependencies than the ones we have in LTS-11.x. cabal2nix = super.cabal2nix.overrideScope (self: super: { hpack = self.hpack_0_28_2; hackage-db = self.hackage-db_2_0_1; }); dbus-hslogger = super.dbus-hslogger.overrideScope (self: super: { dbus = self.dbus_1_0_1; }); - graphviz = (addBuildTool super.graphviz pkgs.graphviz).overrideScope (self: super: { wl-pprint-text = self.wl-pprint-text_1_2_0_0; base-compat = self.base-compat_0_10_1; }); + graphviz = (addBuildTool super.graphviz pkgs.graphviz).overrideScope (self: super: { wl-pprint-text = self.wl-pprint-text_1_2_0_0; base-compat = self.base-compat_0_10_4; }); status-notifier-item = super.status-notifier-item.overrideScope (self: super: { dbus = self.dbus_1_0_1; }); # https://github.com/bos/configurator/issues/22 @@ -989,7 +989,7 @@ self: super: { cp -v embeddedfiles/*.info* $out/share/info/ ''; }); - hledger-ui = overrideCabal super.hledger-ui (drv: { + hledger-ui = (overrideCabal super.hledger-ui (drv: { postInstall = '' for i in $(seq 1 9); do for j in *.$i; do @@ -999,8 +999,8 @@ self: super: { done mkdir -p $out/share/info cp -v *.info* $out/share/info/ - ''; - }); + ''; # hledger-ui 1.10 needs newer fsnotify than lts-11 provides. + })).overrideScope (self: super: { fsnotify = self.fsnotify_0_3_0_1; }); hledger-web = overrideCabal super.hledger-web (drv: { postInstall = '' for i in $(seq 1 9); do @@ -1063,14 +1063,17 @@ self: super: { }); # dhall-json requires a very particular dhall version - dhall-json_1_2_1 = super.dhall-json_1_2_1.override { dhall = self.dhall_1_14_0; }; + dhall-json_1_2_1 = super.dhall-json_1_2_1.override { dhall = self.dhall_1_15_0; }; + + # dhall-nix requires a very particular dhall version + dhall-nix = super.dhall-nix.override { dhall = self.dhall_1_15_0; }; # https://github.com/fpco/streaming-commons/issues/49 streaming-commons = dontCheck super.streaming-commons; # cabal2nix generates a dependency on base-compat, which is the wrong version base-compat-batteries = super.base-compat-batteries.override { - base-compat = super.base-compat_0_10_1; + base-compat = super.base-compat_0_10_4; }; } diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.2.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.2.x.nix index ce24d9a27f48..6ea2db37d21d 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.2.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.2.x.nix @@ -94,4 +94,16 @@ self: super: { haddock-library = dontHaddock (dontCheck self.haddock-library_1_5_0_1); })); + # Hledger depends indirectly on different versions of base-compat. The + # override can probably be removed once we update to LTS 12.x. + hledger-lib = super.hledger-lib.overrideScope (self: super: { base-compat = self.base-compat_0_10_4; }); + hledger = super.hledger.overrideScope (self: super: { + base-compat = self.base-compat_0_10_4; + aeson = self.aeson_1_4_0_0; + }); + hledger-web = super.hledger-web.overrideScope (self: super: { + base-compat = self.base-compat_0_10_4; + aeson = self.aeson_1_4_0_0; + }); + } diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix index 736be056e0e7..b9e8a2bb4725 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix @@ -23,7 +23,6 @@ self: super: { ghc-prim = null; ghci = null; haskeline = null; - hoopl = self.hoopl_3_10_2_2; # no longer a core library in GHC 8.4.x hpc = null; integer-gmp = null; mtl = null; @@ -40,6 +39,9 @@ self: super: { unix = null; xhtml = null; + # Use to be a core-library, but no longer is since GHC 8.4.x. + hoopl = self.hoopl_3_10_2_2; + doctest = dontCheck super.doctest_0_16_0; # tests depend on very recent QuickCheck hackage-db = super.hackage-db_2_0_1; @@ -121,9 +123,6 @@ self: super: { }; }); - ## Bounds related: it wants base-compat 0.9. - criterion = super.criterion_1_4_1_0; - ## Unmerged ## Unmerged. PR: https://github.com/wrengr/bytestring-trie/pull/3 @@ -391,15 +390,17 @@ self: super: { enclosed-exceptions = dontCheck super.enclosed-exceptions; # Older versions don't compile. - base-compat = self.base-compat_0_10_1; + base-compat = self.base-compat_0_10_4; brick = self.brick_0_37_1; - dhall = self.dhall_1_14_0; - dhall_1_13_0 = doJailbreak super.dhall_1_14_0; # support ansi-terminal 0.8.x + criterion = super.criterion_1_5_0_0; + dhall = self.dhall_1_15_0; + # This is probably obsolete: + # dhall_1_15_0 = doJailbreak super.dhall_1_15_0; # support ansi-terminal 0.8.x HaTeX = self.HaTeX_3_19_0_0; hpack = self.hpack_0_28_2; - hspec = dontCheck super.hspec_2_5_3; - hspec-core = dontCheck super.hspec-core_2_5_3; - hspec-discover = self.hspec-discover_2_5_3; + hspec = dontCheck super.hspec_2_5_4; + hspec-core = dontCheck super.hspec-core_2_5_4; + hspec-discover = self.hspec-discover_2_5_4; hspec-smallcheck = self.hspec-smallcheck_0_5_2; matrix = self.matrix_0_3_6_1; pandoc = self.pandoc_2_2_1; @@ -415,24 +416,4 @@ self: super: { # https://github.com/xmonad/xmonad-contrib/issues/235 xmonad-contrib = doJailbreak (appendPatch super.xmonad-contrib ./patches/xmonad-contrib-ghc-8.4.1-fix.patch); - # Contributed by Bertram Felgenhauer <int-e@gmx.de>. - arrows = appendPatch super.arrows (pkgs.fetchpatch { - url = https://raw.githubusercontent.com/lambdabot/lambdabot/ghc-8.4.1/patches/arrows-0.4.4.1.patch; - sha256 = "0j859vclcfnz8n2mw466mv00kjsa9gdbrppjc1m3b68jbypdmfvr"; - }); - - # Contributed by Bertram Felgenhauer <int-e@gmx.de>. - flexible-defaults = appendPatch super.flexible-defaults (pkgs.fetchpatch { - url = https://raw.githubusercontent.com/lambdabot/lambdabot/ghc-8.4.1/patches/flexible-defaults-0.0.1.2.patch; - sha256 = "1bpsqq80h6nxm04wddgcgyzn0fjfsmhccmqb211jqswv5209znx8"; - }); - - lambdabot-core = appendPatch super.lambdabot-core ./patches/lambdabot-core-ghc-8.4.x-fix.patch; - - # Version 1.9.1 excludes base-compat 0.10.x for the benefit of older - # compilers, but ghc 8.4.x works fine with the new version. - hledger-lib = doJailbreak super.hledger-lib; - hledger = doJailbreak super.hledger; - hledger-ui = doJailbreak super.hledger-ui; - } diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix new file mode 100644 index 000000000000..bc540cbe36d6 --- /dev/null +++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix @@ -0,0 +1,47 @@ +{ pkgs, haskellLib }: + +with haskellLib; + +self: super: { + + # Use the latest LLVM. + inherit (pkgs) llvmPackages; + + # Disable GHC 8.6.x core libraries. + array = null; + base = null; + binary = null; + bytestring = null; + Cabal = null; + containers = null; + deepseq = null; + directory = null; + filepath = null; + ghc-boot = null; + ghc-boot-th = null; + ghc-compact = null; + ghc-heap = null; + ghc-prim = null; + ghci = null; + haskeline = null; + hpc = null; + integer-gmp = null; + libiserv = null; + mtl = null; + parsec = null; + pretty = null; + process = null; + rts = null; + stm = null; + template-haskell = null; + terminfo = null; + text = null; + time = null; + transformers = null; + unix = null; + xhtml = null; + + # Use to be a core-library, but no longer is since GHC 8.4.x. + hoopl = self.hoopl_3_10_2_2; + +} diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml index bc2412aca11a..6957614c95cc 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml @@ -38,7 +38,9 @@ core-packages: - ghcjs-base-0 default-package-overrides: - # LTS Haskell 11.15 + # Newer versions require contravariant-1.5.*, which many builds refuse at the moment. + - base-compat-batteries ==0.10.1 + # LTS Haskell 11.16 - abstract-deque ==0.3 - abstract-deque-tests ==0.3 - abstract-par ==0.3.3 @@ -246,9 +248,9 @@ default-package-overrides: - basic-prelude ==0.7.0 - bbdb ==0.8 - bcrypt ==0.0.11 - - beam-core ==0.7.2.1 - - beam-migrate ==0.3.2.0 - - beam-sqlite ==0.3.2.1 + - beam-core ==0.7.2.2 + - beam-migrate ==0.3.2.1 + - beam-sqlite ==0.3.2.2 - bench ==1.0.9 - benchpress ==0.2.2.10 - bencode ==0.6.0.0 @@ -612,7 +614,7 @@ default-package-overrides: - doctemplates ==0.2.2.1 - doctest ==0.13.0 - doctest-discover ==0.1.0.7 - - doctest-driver-gen ==0.2.0.2 + - doctest-driver-gen ==0.2.0.3 - do-list ==1.0.1 - dom-parser ==3.0.0 - dotenv ==0.5.2.5 @@ -736,7 +738,7 @@ default-package-overrides: - flac ==0.1.2 - flac-picture ==0.1.1 - flat-mcmc ==1.5.0 - - flexible-defaults ==0.0.1.2 + - flexible-defaults ==0.0.2 - FloatingHex ==0.4 - floatshow ==0.2.4 - flow ==1.0.12 @@ -776,7 +778,7 @@ default-package-overrides: - functor-classes-compat ==1 - fuzzcheck ==0.1.1 - fuzzyset ==0.1.0.6 - - gauge ==0.2.1 + - gauge ==0.2.2 - gc ==0.0.2 - gd ==3000.7.3 - gdax ==0.6.0.0 @@ -784,7 +786,7 @@ default-package-overrides: - general-games ==1.1.1 - generic-aeson ==0.2.0.9 - generic-arbitrary ==0.1.0 - - generic-deriving ==1.12.1 + - generic-deriving ==1.12.2 - generic-lens ==0.5.1.0 - GenericPretty ==1.2.2 - generic-random ==1.1.0.2 @@ -817,7 +819,7 @@ default-package-overrides: - ghc-exactprint ==0.5.6.1 - ghcid ==0.6.10 - ghcjs-base-stub ==0.1.0.4 - - ghcjs-codemirror ==0.0.0.1 + - ghcjs-codemirror ==0.0.0.2 - ghcjs-perch ==0.3.3.2 - ghc-parser ==0.2.0.2 - ghc-paths ==0.1.0.9 @@ -896,8 +898,8 @@ default-package-overrides: - HandsomeSoup ==0.4.2 - handwriting ==0.1.0.3 - hapistrano ==0.3.5.7 - - happstack-jmacro ==7.0.12 - - happstack-server ==7.5.1 + - happstack-jmacro ==7.0.12.1 + - happstack-server ==7.5.1.1 - happstack-server-tls ==7.1.6.5 - happy ==1.19.9 - hasbolt ==0.1.3.0 @@ -906,7 +908,7 @@ default-package-overrides: - hashids ==1.0.2.4 - hashmap ==1.3.3 - hashtables ==1.2.3.1 - - haskeline ==0.7.4.2 + - haskeline ==0.7.4.3 - haskell-gi ==0.21.3 - haskell-gi-base ==0.21.1 - haskell-gi-overloading ==0.0 @@ -965,7 +967,7 @@ default-package-overrides: - hexml-lens ==0.2.1 - hexpat ==0.20.13 - hexstring ==0.11.1 - - hformat ==0.3.2.0 + - hformat ==0.3.3.0 - hfsevents ==0.1.6 - hid ==0.2.2 - hidapi ==0.1.4 @@ -1065,7 +1067,7 @@ default-package-overrides: - htaglib ==1.1.1 - HTF ==0.13.2.4 - html ==1.0.1.2 - - html-conduit ==1.3.0 + - html-conduit ==1.3.1 - html-email-validate ==0.2.0.0 - html-entity-map ==0.1.0.0 - htoml ==1.0.0.3 @@ -1147,7 +1149,7 @@ default-package-overrides: - inline-c ==0.6.0.6 - inline-c-cpp ==0.2.1.0 - inline-java ==0.8.2 - - inline-r ==0.9.1 + - inline-r ==0.9.2 - insert-ordered-containers ==0.2.1.0 - inspection-testing ==0.2.0.1 - instance-control ==0.1.2.0 @@ -1227,8 +1229,6 @@ default-package-overrides: - l10n ==0.1.0.1 - labels ==0.3.3 - lackey ==1.0.2 - - lambdabot-core ==5.1.0.1 - - lambdabot-irc-plugins ==5.1.0.1 - lame ==0.1.1 - language-c ==0.7.2 - language-c-quote ==0.12.1 @@ -1357,7 +1357,7 @@ default-package-overrides: - messagepack-rpc ==0.5.1 - metrics ==0.4.1.1 - MFlow ==0.4.6.0 - - microformats2-parser ==1.0.1.7 + - microformats2-parser ==1.0.1.8 - microlens ==0.4.8.3 - microlens-aeson ==2.3.0 - microlens-contra ==0.1.0.1 @@ -1372,7 +1372,7 @@ default-package-overrides: - milena ==0.5.2.2 - mime-mail ==0.4.14 - mime-mail-ses ==0.4.1 - - mime-types ==0.1.0.7 + - mime-types ==0.1.0.8 - minimorph ==0.1.6.1 - minio-hs ==1.0.1 - miniutter ==0.4.7.0 @@ -1447,7 +1447,7 @@ default-package-overrides: - murmur-hash ==0.1.0.9 - mustache ==2.3.0 - mutable-containers ==0.3.4 - - mwc-probability ==2.0.3 + - mwc-probability ==2.0.4 - mwc-random ==0.13.6.0 - mwc-random-accelerate ==0.1.0.0 - mysql ==0.1.5 @@ -1477,7 +1477,7 @@ default-package-overrides: - network-anonymous-tor ==0.11.0 - network-attoparsec ==0.12.2 - network-carbon ==1.0.12 - - network-conduit-tls ==1.3.0 + - network-conduit-tls ==1.3.2 - network-house ==0.1.0.2 - network-info ==0.2.0.10 - network-ip ==0.3.0.2 @@ -1626,7 +1626,7 @@ default-package-overrides: - pipes-extras ==1.0.14 - pipes-fastx ==0.3.0.0 - pipes-fluid ==0.6.0.0 - - pipes-group ==1.0.10 + - pipes-group ==1.0.11 - pipes-misc ==0.4.0.1 - pipes-mongodb ==0.1.0.0 - pipes-network ==0.6.5 @@ -1647,7 +1647,7 @@ default-package-overrides: - poly-arity ==0.1.0 - polynomials-bernstein ==1.1.2 - polyparse ==1.12 - - pomaps ==0.0.0.4 + - pomaps ==0.0.1.0 - pooled-io ==0.0.2.1 - PortMidi ==0.1.6.1 - posix-paths ==0.2.1.5 @@ -1699,8 +1699,8 @@ default-package-overrides: - prompt ==0.1.1.2 - protobuf ==0.2.1.2 - protobuf-simple ==0.1.0.5 - - protocol-buffers ==2.4.10 - - protocol-buffers-descriptor ==2.4.10 + - protocol-buffers ==2.4.11 + - protocol-buffers-descriptor ==2.4.11 - protocol-radius ==0.0.1.0 - protocol-radius-test ==0.0.1.0 - proto-lens ==0.2.2.0 @@ -1843,8 +1843,8 @@ default-package-overrides: - say ==0.1.0.0 - sbp ==2.3.16 - sbv ==7.5 - - SCalendar ==1.1.0 - scalendar ==1.2.0 + - SCalendar ==1.1.0 - scalpel ==0.5.1 - scalpel-core ==0.5.1 - scanner ==0.2 @@ -1887,7 +1887,7 @@ default-package-overrides: - servant-generic ==0.1.0.2 - servant-github-webhook ==0.4.1.0 - servant-js ==0.9.3.2 - - servant-JuicyPixels ==0.3.0.3 + - servant-JuicyPixels ==0.3.0.4 - servant-kotlin ==0.1.1.1 - servant-lucid ==0.8 - servant-mock ==0.8.4 @@ -1895,7 +1895,7 @@ default-package-overrides: - servant-purescript ==0.9.0.2 - servant-ruby ==0.7.0.0 - servant-server ==0.13.0.1 - - servant-static-th ==0.2.0.1 + - servant-static-th ==0.2.2.0 - servant-subscriber ==0.6.0.1 - servant-swagger ==1.1.5 - servant-swagger-ui ==0.2.5.3.9.1 @@ -1938,7 +1938,7 @@ default-package-overrides: - skein ==1.0.9.4 - skeletons ==0.4.0 - skylighting ==0.6 - - slack-web ==0.2.0.5 + - slack-web ==0.2.0.6 - slave-thread ==1.0.2 - slug ==0.1.7 - smallcheck ==1.1.4 @@ -2073,7 +2073,7 @@ default-package-overrides: - tasty-expected-failure ==0.11.1.1 - tasty-golden ==2.3.2 - tasty-hedgehog ==0.1.0.2 - - tasty-hspec ==1.1.4 + - tasty-hspec ==1.1.5 - tasty-html ==0.4.1.1 - tasty-hunit ==0.10.0.1 - tasty-kat ==0.0.3 @@ -2125,7 +2125,7 @@ default-package-overrides: - text-zipper ==0.10.1 - tfp ==1.0.0.2 - tf-random ==0.5 - - th-abstraction ==0.2.7.0 + - th-abstraction ==0.2.8.0 - th-data-compat ==0.0.2.6 - th-desugar ==1.7 - these ==0.7.4 @@ -2133,7 +2133,7 @@ default-package-overrides: - th-extras ==0.0.0.4 - th-lift ==0.7.10 - th-lift-instances ==0.1.11 - - th-orphans ==0.13.5 + - th-orphans ==0.13.6 - thread-hierarchy ==0.3.0.0 - thread-local-storage ==0.1.2 - threads ==0.5.1.6 @@ -2424,7 +2424,7 @@ default-package-overrides: - xturtle ==0.2.0.0 - xxhash ==0.0.2 - xxhash-ffi ==0.2.0.0 - - yaml ==0.8.30 + - yaml ==0.8.31.1 - Yampa ==0.10.7 - YampaSynth ==0.2 - yeshql ==3.0.1.3 @@ -2472,7 +2472,7 @@ default-package-overrides: - zeromq4-haskell ==0.7.0 - zim-parser ==0.2.1.0 - zip ==1.0.0 - - zip-archive ==0.3.2.5 + - zip-archive ==0.3.3 - zippers ==0.2.5 - zlib ==0.6.2 - zlib-bindings ==0.1.1.5 @@ -2811,6 +2811,7 @@ dont-distribute-packages: affine-invariant-ensemble-mcmc: [ i686-linux, x86_64-linux, x86_64-darwin ] affine: [ i686-linux, x86_64-linux, x86_64-darwin ] afv: [ i686-linux, x86_64-linux, x86_64-darwin ] + ag-pictgen: [ i686-linux, x86_64-linux, x86_64-darwin ] Agata: [ i686-linux, x86_64-linux, x86_64-darwin ] Agda-executable: [ i686-linux, x86_64-linux, x86_64-darwin ] agda-server: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -2824,7 +2825,17 @@ dont-distribute-packages: airbrake: [ i686-linux, x86_64-linux, x86_64-darwin ] airship: [ i686-linux, x86_64-linux, x86_64-darwin ] airtable-api: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-branches: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-distributed: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-experiment-cairo: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-experiment-chart: [ i686-linux, x86_64-linux, x86_64-darwin ] aivika-experiment-diagrams: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-experiment: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-gpss: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-lattice: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-realtime: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika-transformers: [ i686-linux, x86_64-linux, x86_64-darwin ] + aivika: [ i686-linux, x86_64-linux, x86_64-darwin ] ajhc: [ i686-linux, x86_64-linux, x86_64-darwin ] al: [ i686-linux, x86_64-linux, x86_64-darwin ] AlanDeniseEricLauren: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -2837,6 +2848,7 @@ dont-distribute-packages: algebraic-prelude: [ i686-linux, x86_64-linux, x86_64-darwin ] algebraic: [ i686-linux, x86_64-linux, x86_64-darwin ] algo-s: [ i686-linux, x86_64-linux, x86_64-darwin ] + algolia: [ i686-linux, x86_64-linux, x86_64-darwin ] AlgoRhythm: [ i686-linux, x86_64-linux, x86_64-darwin ] AlgorithmW: [ i686-linux, x86_64-linux, x86_64-darwin ] align-text: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3072,6 +3084,7 @@ dont-distribute-packages: asn1-codec: [ i686-linux, x86_64-linux, x86_64-darwin ] AspectAG: [ i686-linux, x86_64-linux, x86_64-darwin ] assert: [ i686-linux, x86_64-linux, x86_64-darwin ] + asset-map: [ i686-linux, x86_64-linux, x86_64-darwin ] assimp: [ i686-linux, x86_64-linux, x86_64-darwin ] astrds: [ i686-linux, x86_64-linux, x86_64-darwin ] astview: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3191,6 +3204,7 @@ dont-distribute-packages: base-noprelude: [ i686-linux, x86_64-linux, x86_64-darwin ] base64-bytestring-type: [ i686-linux, x86_64-linux, x86_64-darwin ] base64-conduit: [ i686-linux, x86_64-linux, x86_64-darwin ] + baserock-schema: [ i686-linux, x86_64-linux, x86_64-darwin ] basic-sop: [ i686-linux, x86_64-linux, x86_64-darwin ] BASIC: [ i686-linux, x86_64-linux, x86_64-darwin ] basic: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3203,6 +3217,7 @@ dont-distribute-packages: battleships: [ i686-linux, x86_64-linux, x86_64-darwin ] bayes-stack: [ i686-linux, x86_64-linux, x86_64-darwin ] BCMtools: [ i686-linux, x86_64-linux, x86_64-darwin ] + bdcs-api: [ i686-linux, x86_64-linux, x86_64-darwin ] bdcs: [ i686-linux, x86_64-linux, x86_64-darwin ] beam-core: [ i686-linux, x86_64-linux, x86_64-darwin ] beam-migrate: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3300,6 +3315,7 @@ dont-distribute-packages: BiobaseTypes: [ i686-linux, x86_64-linux, x86_64-darwin ] BiobaseVienna: [ i686-linux, x86_64-linux, x86_64-darwin ] BiobaseXNA: [ i686-linux, x86_64-linux, x86_64-darwin ] + biohazard: [ i686-linux, x86_64-linux, x86_64-darwin ] BioHMM: [ i686-linux, x86_64-linux, x86_64-darwin ] bioinformatics-toolkit: [ i686-linux, x86_64-linux, x86_64-darwin ] biophd: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3431,6 +3447,7 @@ dont-distribute-packages: bytestringreadp: [ i686-linux, x86_64-linux, x86_64-darwin ] c-dsl: [ i686-linux, x86_64-linux, x86_64-darwin ] c-io: [ i686-linux, x86_64-linux, x86_64-darwin ] + c-mosquitto: [ i686-linux, x86_64-linux, x86_64-darwin ] c2hsc: [ i686-linux, x86_64-linux, x86_64-darwin ] ca: [ i686-linux, x86_64-linux, x86_64-darwin ] cabal-audit: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3472,6 +3489,8 @@ dont-distribute-packages: CabalSearch: [ i686-linux, x86_64-linux, x86_64-darwin ] cabalvchk: [ i686-linux, x86_64-linux, x86_64-darwin ] cabocha: [ i686-linux, x86_64-linux, x86_64-darwin ] + cachix-api: [ i686-linux, x86_64-linux, x86_64-darwin ] + cachix: [ i686-linux, x86_64-linux, x86_64-darwin ] cacophony: [ i686-linux, x86_64-linux, x86_64-darwin ] caffegraph: [ i686-linux, x86_64-linux, x86_64-darwin ] cake3: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3578,6 +3597,7 @@ dont-distribute-packages: chalkboard: [ i686-linux, x86_64-linux, x86_64-darwin ] charade: [ i686-linux, x86_64-linux, x86_64-darwin ] Chart-diagrams: [ i686-linux, x86_64-linux, x86_64-darwin ] + Chart-gtk: [ i686-linux, x86_64-linux, x86_64-darwin ] chart-histogram: [ i686-linux, x86_64-linux, x86_64-darwin ] Chart-simple: [ i686-linux, x86_64-linux, x86_64-darwin ] chart-unit: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3656,6 +3676,7 @@ dont-distribute-packages: click-clack: [ i686-linux, x86_64-linux, x86_64-darwin ] clif: [ i686-linux, x86_64-linux, x86_64-darwin ] clifford: [ i686-linux, x86_64-linux, x86_64-darwin ] + clifm: [ i686-linux, x86_64-linux, x86_64-darwin ] clingo: [ i686-linux, x86_64-linux, x86_64-darwin ] clippard: [ i686-linux, x86_64-linux, x86_64-darwin ] clipper: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4056,6 +4077,7 @@ dont-distribute-packages: dead-code-detection: [ i686-linux, x86_64-linux, x86_64-darwin ] dead-simple-json: [ i686-linux, x86_64-linux, x86_64-darwin ] debug-me: [ i686-linux, x86_64-linux, x86_64-darwin ] + debug-trace-var: [ i686-linux, x86_64-linux, x86_64-darwin ] debug: [ i686-linux, x86_64-linux, x86_64-darwin ] decepticons: [ i686-linux, x86_64-linux, x86_64-darwin ] decimal-arithmetic: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4098,6 +4120,7 @@ dont-distribute-packages: derp-lib: [ i686-linux, x86_64-linux, x86_64-darwin ] descript-lang: [ i686-linux, x86_64-linux, x86_64-darwin ] deterministic-game-engine: [ i686-linux, x86_64-linux, x86_64-darwin ] + detour-via-uom: [ i686-linux, x86_64-linux, x86_64-darwin ] deunicode: [ i686-linux, x86_64-linux, x86_64-darwin ] dewdrop: [ i686-linux, x86_64-linux, x86_64-darwin ] Dflow: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4147,6 +4170,7 @@ dont-distribute-packages: DifferenceLogic: [ i686-linux, x86_64-linux, x86_64-darwin ] DifferentialEvolution: [ i686-linux, x86_64-linux, x86_64-darwin ] difftodo: [ i686-linux, x86_64-linux, x86_64-darwin ] + digestive-bootstrap: [ i686-linux, x86_64-linux, x86_64-darwin ] digestive-foundation-lucid: [ i686-linux, x86_64-linux, x86_64-darwin ] digestive-functors-heist: [ i686-linux, x86_64-linux, x86_64-darwin ] digestive-functors-hsp: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4491,6 +4515,7 @@ dont-distribute-packages: fastcgi: [ i686-linux, x86_64-linux, x86_64-darwin ] fastedit: [ i686-linux, x86_64-linux, x86_64-darwin ] fastirc: [ i686-linux, x86_64-linux, x86_64-darwin ] + fastly: [ i686-linux, x86_64-linux, x86_64-darwin ] FastPush: [ i686-linux, x86_64-linux, x86_64-darwin ] FastxPipe: [ i686-linux, x86_64-linux, x86_64-darwin ] fathead-util: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4531,6 +4556,7 @@ dont-distribute-packages: FermatsLastMargin: [ i686-linux, x86_64-linux, x86_64-darwin ] fernet: [ i686-linux, x86_64-linux, x86_64-darwin ] FerryCore: [ i686-linux, x86_64-linux, x86_64-darwin ] + festung: [ i686-linux, x86_64-linux, x86_64-darwin ] Feval: [ i686-linux, x86_64-linux, x86_64-darwin ] ffeed: [ i686-linux, x86_64-linux, x86_64-darwin ] fficxx: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4594,6 +4620,7 @@ dont-distribute-packages: flexiwrap: [ i686-linux, x86_64-linux, x86_64-darwin ] flickr: [ i686-linux, x86_64-linux, x86_64-darwin ] flight-igc: [ i686-linux, x86_64-linux, x86_64-darwin ] + flight-kml: [ i686-linux, x86_64-linux, x86_64-darwin ] Flippi: [ i686-linux, x86_64-linux, x86_64-darwin ] flite: [ i686-linux, x86_64-linux, x86_64-darwin ] floating-bits: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4681,6 +4708,7 @@ dont-distribute-packages: fresh: [ i686-linux, x86_64-linux, x86_64-darwin ] friday-devil: [ i686-linux, x86_64-linux, x86_64-darwin ] friday-scale-dct: [ i686-linux, x86_64-linux, x86_64-darwin ] + fromhtml: [ i686-linux, x86_64-linux, x86_64-darwin ] frown: [ i686-linux, x86_64-linux, x86_64-darwin ] frp-arduino: [ i686-linux, x86_64-linux, x86_64-darwin ] frpnow-gtk3: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4703,6 +4731,7 @@ dont-distribute-packages: funbot-client: [ i686-linux, x86_64-linux, x86_64-darwin ] funbot-git-hook: [ i686-linux, x86_64-linux, x86_64-darwin ] funbot: [ i686-linux, x86_64-linux, x86_64-darwin ] + funcons-lambda-cbv-mp: [ i686-linux, x86_64-linux, x86_64-darwin ] funcons-tools: [ i686-linux, x86_64-linux, x86_64-darwin ] function-combine: [ i686-linux, x86_64-linux, x86_64-darwin ] function-instances-algebra: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4910,6 +4939,7 @@ dont-distribute-packages: githud: [ i686-linux, x86_64-linux, x86_64-darwin ] gitignore: [ i686-linux, x86_64-linux, x86_64-darwin ] gitit: [ i686-linux, x86_64-linux, x86_64-darwin ] + gitlab-api: [ i686-linux, x86_64-linux, x86_64-darwin ] gitlib-cmdline: [ i686-linux, x86_64-linux, x86_64-darwin ] gitlib-cross: [ i686-linux, x86_64-linux, x86_64-darwin ] gitlib-libgit2: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5132,6 +5162,7 @@ dont-distribute-packages: graph-utils: [ i686-linux, x86_64-linux, x86_64-darwin ] graph-visit: [ i686-linux, x86_64-linux, x86_64-darwin ] Graph500: [ i686-linux, x86_64-linux, x86_64-darwin ] + graph: [ i686-linux, x86_64-linux, x86_64-darwin ] Graphalyze: [ i686-linux, x86_64-linux, x86_64-darwin ] graphbuilder: [ i686-linux, x86_64-linux, x86_64-darwin ] graphene: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5144,6 +5175,7 @@ dont-distribute-packages: graphtype: [ i686-linux, x86_64-linux, x86_64-darwin ] graql: [ i686-linux, x86_64-linux, x86_64-darwin ] grasp: [ i686-linux, x86_64-linux, x86_64-darwin ] + gray-code: [ i686-linux, x86_64-linux, x86_64-darwin ] gray-extended: [ i686-linux, x86_64-linux, x86_64-darwin ] graylog: [ i686-linux, x86_64-linux, x86_64-darwin ] greencard-lib: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5282,6 +5314,7 @@ dont-distribute-packages: halfs: [ i686-linux, x86_64-linux, x86_64-darwin ] halipeto: [ i686-linux, x86_64-linux, x86_64-darwin ] halive: [ i686-linux, x86_64-linux, x86_64-darwin ] + hall-symbols: [ i686-linux, x86_64-linux, x86_64-darwin ] halma-gui: [ i686-linux, x86_64-linux, x86_64-darwin ] halma-telegram-bot: [ i686-linux, x86_64-linux, x86_64-darwin ] halma: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5404,6 +5437,7 @@ dont-distribute-packages: haskell-names: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-neo4j-client: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-openflow: [ i686-linux, x86_64-linux, x86_64-darwin ] + haskell-overridez: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-packages: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-pdf-presenter: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-platform-test: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5536,6 +5570,7 @@ dont-distribute-packages: hBDD-CMUBDD: [ i686-linux, x86_64-linux, x86_64-darwin ] hBDD-CUDD: [ i686-linux, x86_64-linux, x86_64-darwin ] hbeat: [ i686-linux, x86_64-linux, x86_64-darwin ] + hbf: [ i686-linux, x86_64-linux, x86_64-darwin ] hblas: [ i686-linux, x86_64-linux, x86_64-darwin ] hblock: [ i686-linux, x86_64-linux, x86_64-darwin ] HCard: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5743,6 +5778,7 @@ dont-distribute-packages: HLearn-classification: [ i686-linux, x86_64-linux, x86_64-darwin ] HLearn-datastructures: [ i686-linux, x86_64-linux, x86_64-darwin ] HLearn-distributions: [ i686-linux, x86_64-linux, x86_64-darwin ] + hledger-api: [ i686-linux, x86_64-linux, x86_64-darwin ] hledger-chart: [ i686-linux, x86_64-linux, x86_64-darwin ] hledger-diff: [ i686-linux, x86_64-linux, x86_64-darwin ] hledger-irr: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6060,6 +6096,7 @@ dont-distribute-packages: HTicTacToe: [ i686-linux, x86_64-linux, x86_64-darwin ] htlset: [ i686-linux, x86_64-linux, x86_64-darwin ] html-entities: [ i686-linux, x86_64-linux, x86_64-darwin ] + html-entity: [ i686-linux, x86_64-linux, x86_64-darwin ] html-rules: [ i686-linux, x86_64-linux, x86_64-darwin ] html-tokenizer: [ i686-linux, x86_64-linux, x86_64-darwin ] hts: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6082,6 +6119,7 @@ dont-distribute-packages: http-reverse-proxy: [ i686-linux, x86_64-linux, x86_64-darwin ] http-shed: [ i686-linux, x86_64-linux, x86_64-darwin ] http-wget: [ i686-linux, x86_64-linux, x86_64-darwin ] + http2-client-grpc: [ i686-linux, x86_64-linux, x86_64-darwin ] http2-client: [ i686-linux, x86_64-linux, x86_64-darwin ] https-everywhere-rules-raw: [ i686-linux, x86_64-linux, x86_64-darwin ] https-everywhere-rules: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6224,6 +6262,7 @@ dont-distribute-packages: improve: [ i686-linux, x86_64-linux, x86_64-darwin ] INblobs: [ i686-linux, x86_64-linux, x86_64-darwin ] inch: [ i686-linux, x86_64-linux, x86_64-darwin ] + include-file: [ i686-linux, x86_64-linux, x86_64-darwin ] incremental-computing: [ i686-linux, x86_64-linux, x86_64-darwin ] incremental-maps: [ i686-linux, x86_64-linux, x86_64-darwin ] incremental-parser: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6336,6 +6375,7 @@ dont-distribute-packages: jason: [ i686-linux, x86_64-linux, x86_64-darwin ] java-bridge-extras: [ i686-linux, x86_64-linux, x86_64-darwin ] java-bridge: [ i686-linux, x86_64-linux, x86_64-darwin ] + java-character: [ i686-linux, x86_64-linux, x86_64-darwin ] java-reflect: [ i686-linux, x86_64-linux, x86_64-darwin ] javaclass: [ i686-linux, x86_64-linux, x86_64-darwin ] Javasf: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6424,6 +6464,8 @@ dont-distribute-packages: karakuri: [ i686-linux, x86_64-linux, x86_64-darwin ] karps: [ i686-linux, x86_64-linux, x86_64-darwin ] katip-elasticsearch: [ i686-linux, x86_64-linux, x86_64-darwin ] + katip-rollbar: [ i686-linux, x86_64-linux, x86_64-darwin ] + katip-scalyr-scribe: [ i686-linux, x86_64-linux, x86_64-darwin ] katip-syslog: [ i686-linux, x86_64-linux, x86_64-darwin ] katt: [ i686-linux, x86_64-linux, x86_64-darwin ] kawaii: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6570,6 +6612,7 @@ dont-distribute-packages: layers-game: [ i686-linux, x86_64-linux, x86_64-darwin ] layers: [ i686-linux, x86_64-linux, x86_64-darwin ] layout-bootstrap: [ i686-linux, x86_64-linux, x86_64-darwin ] + layout-rules: [ i686-linux, x86_64-linux, x86_64-darwin ] layouting: [ i686-linux, x86_64-linux, x86_64-darwin ] lazy-hash-cache: [ i686-linux, x86_64-linux, x86_64-darwin ] lazy-hash: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6641,6 +6684,7 @@ dont-distribute-packages: libxml-enumerator: [ i686-linux, x86_64-linux, x86_64-darwin ] libxslt: [ i686-linux, x86_64-linux, x86_64-darwin ] LibZip: [ i686-linux, x86_64-linux, x86_64-darwin ] + life-sync: [ i686-linux, x86_64-linux, x86_64-darwin ] lifted-protolude: [ i686-linux, x86_64-linux, x86_64-darwin ] lifted-stm: [ i686-linux, x86_64-linux, x86_64-darwin ] lifter: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6864,6 +6908,7 @@ dont-distribute-packages: mathblog: [ i686-linux, x86_64-linux, x86_64-darwin ] mathlink: [ i686-linux, x86_64-linux, x86_64-darwin ] matplotlib: [ i686-linux, x86_64-linux, x86_64-darwin ] + matrix-as-xyz: [ i686-linux, x86_64-linux, x86_64-darwin ] matsuri: [ i686-linux, x86_64-linux, x86_64-darwin ] matterhorn: [ i686-linux, x86_64-linux, x86_64-darwin ] mattermost-api-qc: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6916,6 +6961,7 @@ dont-distribute-packages: memo-sqlite: [ i686-linux, x86_64-linux, x86_64-darwin ] memoization-utils: [ i686-linux, x86_64-linux, x86_64-darwin ] memorable-bits: [ i686-linux, x86_64-linux, x86_64-darwin ] + menoh: [ i686-linux, x86_64-linux, x86_64-darwin ] mercury-api: [ i686-linux, x86_64-linux, x86_64-darwin ] merge-bash-history: [ i686-linux, x86_64-linux, x86_64-darwin ] mergeless: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6971,6 +7017,7 @@ dont-distribute-packages: mkbndl: [ i686-linux, x86_64-linux, x86_64-darwin ] ml-w: [ i686-linux, x86_64-linux, x86_64-darwin ] mlist: [ i686-linux, x86_64-linux, x86_64-darwin ] + mltool: [ i686-linux, x86_64-linux, x86_64-darwin ] mmark-cli: [ i686-linux, x86_64-linux, x86_64-darwin ] mmtf: [ i686-linux, x86_64-linux, x86_64-darwin ] mmtl-base: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7014,6 +7061,7 @@ dont-distribute-packages: monad-ste: [ i686-linux, x86_64-linux, x86_64-darwin ] monad-stlike-io: [ i686-linux, x86_64-linux, x86_64-darwin ] monad-stlike-stm: [ i686-linux, x86_64-linux, x86_64-darwin ] + monad-timing: [ i686-linux, x86_64-linux, x86_64-darwin ] monad-tx: [ i686-linux, x86_64-linux, x86_64-darwin ] monad-unify: [ i686-linux, x86_64-linux, x86_64-darwin ] monad-wrap: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7276,6 +7324,7 @@ dont-distribute-packages: Nomyx-Rules: [ i686-linux, x86_64-linux, x86_64-darwin ] Nomyx-Web: [ i686-linux, x86_64-linux, x86_64-darwin ] Nomyx: [ i686-linux, x86_64-linux, x86_64-darwin ] + non-empty-containers: [ i686-linux, x86_64-linux, x86_64-darwin ] non-empty-zipper: [ i686-linux, x86_64-linux, x86_64-darwin ] NonEmptyList: [ i686-linux, x86_64-linux, x86_64-darwin ] nonlinear-optimization-ad: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7307,6 +7356,7 @@ dont-distribute-packages: numhask-histogram: [ i686-linux, x86_64-linux, x86_64-darwin ] numhask-prelude: [ i686-linux, x86_64-linux, x86_64-darwin ] numhask-range: [ i686-linux, x86_64-linux, x86_64-darwin ] + numhask-test: [ i686-linux, x86_64-linux, x86_64-darwin ] numhask: [ i686-linux, x86_64-linux, x86_64-darwin ] Nussinov78: [ i686-linux, x86_64-linux, x86_64-darwin ] Nutri: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7546,6 +7596,7 @@ dont-distribute-packages: persistent-equivalence: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-hssqlppp: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-map: [ i686-linux, x86_64-linux, x86_64-darwin ] + persistent-migration: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-mysql-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-odbc: [ i686-linux, x86_64-linux, x86_64-darwin ] persistent-protobuf: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7725,6 +7776,7 @@ dont-distribute-packages: potoki-cereal: [ i686-linux, x86_64-linux, x86_64-darwin ] potoki-core: [ i686-linux, x86_64-linux, x86_64-darwin ] potoki-hasql: [ i686-linux, x86_64-linux, x86_64-darwin ] + potoki-zlib: [ i686-linux, x86_64-linux, x86_64-darwin ] potoki: [ i686-linux, x86_64-linux, x86_64-darwin ] potrace-diagrams: [ i686-linux, x86_64-linux, x86_64-darwin ] powerpc: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7750,7 +7802,10 @@ dont-distribute-packages: presto-hdbc: [ i686-linux, x86_64-linux, x86_64-darwin ] pretty-relative-time: [ i686-linux, x86_64-linux, x86_64-darwin ] prettyprinter-vty: [ i686-linux, x86_64-linux, x86_64-darwin ] + prim-array: [ i686-linux, x86_64-linux, x86_64-darwin ] primesieve: [ i686-linux, x86_64-linux, x86_64-darwin ] + primitive-containers: [ i686-linux, x86_64-linux, x86_64-darwin ] + primitive-indexed: [ i686-linux, x86_64-linux, x86_64-darwin ] primitive-simd: [ i686-linux, x86_64-linux, x86_64-darwin ] primitive-sort: [ i686-linux, x86_64-linux, x86_64-darwin ] PrimitiveArray-Pretty: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8057,6 +8112,7 @@ dont-distribute-packages: rei: [ i686-linux, x86_64-linux, x86_64-darwin ] reified-records: [ i686-linux, x86_64-linux, x86_64-darwin ] reify: [ i686-linux, x86_64-linux, x86_64-darwin ] + relapse: [ i686-linux, x86_64-linux, x86_64-darwin ] relation: [ i686-linux, x86_64-linux, x86_64-darwin ] relational-postgresql8: [ i686-linux, x86_64-linux, x86_64-darwin ] relative-date: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8292,6 +8348,7 @@ dont-distribute-packages: scrabble-bot: [ i686-linux, x86_64-linux, x86_64-darwin ] scrape-changes: [ i686-linux, x86_64-linux, x86_64-darwin ] ScratchFs: [ i686-linux, x86_64-linux, x86_64-darwin ] + script-monad: [ i686-linux, x86_64-linux, x86_64-darwin ] scrobble: [ i686-linux, x86_64-linux, x86_64-darwin ] scroll: [ i686-linux, x86_64-linux, x86_64-darwin ] scrz: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8316,6 +8373,7 @@ dont-distribute-packages: SelectSequencesFromMSA: [ i686-linux, x86_64-linux, x86_64-darwin ] selenium-server: [ i686-linux, x86_64-linux, x86_64-darwin ] selenium: [ i686-linux, x86_64-linux, x86_64-darwin ] + self-extract: [ i686-linux, x86_64-linux, x86_64-darwin ] selinux: [ i686-linux, x86_64-linux, x86_64-darwin ] Semantique: [ i686-linux, x86_64-linux, x86_64-darwin ] semdoc: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8357,6 +8415,7 @@ dont-distribute-packages: servant-csharp: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-db-postgresql: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-db: [ i686-linux, x86_64-linux, x86_64-darwin ] + servant-dhall: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-ede: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-ekg: [ i686-linux, x86_64-linux, x86_64-darwin ] servant-elm: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8418,6 +8477,7 @@ dont-distribute-packages: shady-graphics: [ i686-linux, x86_64-linux, x86_64-darwin ] shake-ats: [ i686-linux, x86_64-linux, x86_64-darwin ] shake-cabal-build: [ i686-linux, x86_64-linux, x86_64-darwin ] + shake-cabal: [ i686-linux, x86_64-linux, x86_64-darwin ] shake-ext: [ i686-linux, x86_64-linux, x86_64-darwin ] shake-extras: [ i686-linux, x86_64-linux, x86_64-darwin ] shake-minify: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8646,6 +8706,7 @@ dont-distribute-packages: sparsecheck: [ i686-linux, x86_64-linux, x86_64-darwin ] spata: [ i686-linux, x86_64-linux, x86_64-darwin ] spatial-math: [ i686-linux, x86_64-linux, x86_64-darwin ] + spatial-rotations: [ i686-linux, x86_64-linux, x86_64-darwin ] spdx: [ i686-linux, x86_64-linux, x86_64-darwin ] special-functors: [ i686-linux, x86_64-linux, x86_64-darwin ] specialize-th: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8838,6 +8899,7 @@ dont-distribute-packages: svgutils: [ i686-linux, x86_64-linux, x86_64-darwin ] svm-simple: [ i686-linux, x86_64-linux, x86_64-darwin ] svndump: [ i686-linux, x86_64-linux, x86_64-darwin ] + swagger-petstore: [ i686-linux, x86_64-linux, x86_64-darwin ] swapper: [ i686-linux, x86_64-linux, x86_64-darwin ] swearjure: [ i686-linux, x86_64-linux, x86_64-darwin ] swf: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8925,6 +8987,7 @@ dont-distribute-packages: tasty-auto: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-fail-fast: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-groundhog-converters: [ i686-linux, x86_64-linux, x86_64-darwin ] + tasty-hedgehog-coverage: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-integrate: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-jenkins-xml: [ i686-linux, x86_64-linux, x86_64-darwin ] tasty-laws: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8986,6 +9049,7 @@ dont-distribute-packages: test-framework-quickcheck: [ i686-linux, x86_64-linux, x86_64-darwin ] test-framework-sandbox: [ i686-linux, x86_64-linux, x86_64-darwin ] test-framework-skip: [ i686-linux, x86_64-linux, x86_64-darwin ] + test-karya: [ i686-linux, x86_64-linux, x86_64-darwin ] test-pkg: [ i686-linux, x86_64-linux, x86_64-darwin ] test-sandbox-compose: [ i686-linux, x86_64-linux, x86_64-darwin ] test-sandbox-hunit: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9344,6 +9408,7 @@ dont-distribute-packages: utf8-prelude: [ i686-linux, x86_64-linux, x86_64-darwin ] UTFTConverter: [ i686-linux, x86_64-linux, x86_64-darwin ] util: [ i686-linux, x86_64-linux, x86_64-darwin ] + uu-cco-examples: [ i686-linux, x86_64-linux, x86_64-darwin ] uu-options: [ i686-linux, x86_64-linux, x86_64-darwin ] uuagc-diagrams: [ i686-linux, x86_64-linux, x86_64-darwin ] uuid-aeson: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9477,6 +9542,7 @@ dont-distribute-packages: warp-static: [ i686-linux, x86_64-linux, x86_64-darwin ] warp-tls-uid: [ i686-linux, x86_64-linux, x86_64-darwin ] WashNGo: [ i686-linux, x86_64-linux, x86_64-darwin ] + wasm: [ i686-linux, x86_64-linux, x86_64-darwin ] watcher: [ i686-linux, x86_64-linux, x86_64-darwin ] watchit: [ i686-linux, x86_64-linux, x86_64-darwin ] wavefront-obj: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9506,6 +9572,7 @@ dont-distribute-packages: webcrank-wai: [ i686-linux, x86_64-linux, x86_64-darwin ] webcrank: [ i686-linux, x86_64-linux, x86_64-darwin ] webdriver-snoy: [ i686-linux, x86_64-linux, x86_64-darwin ] + webdriver-w3c: [ i686-linux, x86_64-linux, x86_64-darwin ] WeberLogic: [ i686-linux, x86_64-linux, x86_64-darwin ] webfinger-client: [ i686-linux, x86_64-linux, x86_64-darwin ] webkit-javascriptcore: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -9827,6 +9894,7 @@ dont-distribute-packages: zsh-battery: [ i686-linux, x86_64-linux, x86_64-darwin ] zstd: [ i686-linux, x86_64-linux, x86_64-darwin ] ztail: [ i686-linux, x86_64-linux, x86_64-darwin ] + ztar: [ i686-linux, x86_64-linux, x86_64-darwin ] zuramaru: [ i686-linux, x86_64-linux, x86_64-darwin ] Zwaluw: [ i686-linux, x86_64-linux, x86_64-darwin ] zxcvbn-c: [ i686-linux, x86_64-linux, x86_64-darwin ] diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 2a60e3b71e0e..ed76024770cf 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -921,8 +921,8 @@ self: { }: mkDerivation { pname = "Allure"; - version = "0.8.1.2"; - sha256 = "0zm2sipfhg3fc5v33z7agj3sx4xzqlsd41apnqn403ld0ffvzy58"; + version = "0.8.3.0"; + sha256 = "1yzqiidc8qbjlpgs2d3jkikzggyd7ajq7i7l1dgwqv6sh4r030vb"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -2780,6 +2780,7 @@ self: { ]; description = "Utility functions for using the chart library with GTK"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "Chart-simple" = callPackage @@ -5042,10 +5043,10 @@ self: { }: mkDerivation { pname = "Euterpea"; - version = "2.0.4"; - sha256 = "1n0b4ksdrr1457abvij76z8r4ski4cic80picddilpg83mxaasw6"; - revision = "3"; - editedCabalFile = "19llqvhhc1dl8khggvag47xs2ly0kf7wyba4d092r1c9rz4visy9"; + version = "2.0.5"; + sha256 = "186r8a2829sqx4l6n80vifc7g8b5ap66jl3hnqdwzg7s2c0r9saq"; + revision = "1"; + editedCabalFile = "1fy3f610i8nwfipfm1dxgb8807k1vix9d65rgn59k579390xfvw8"; libraryHaskellDepends = [ array arrows base bytestring containers deepseq ghc-prim HCodecs heap PortMidi random stm @@ -7052,6 +7053,30 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "HABQT" = callPackage + ({ mkDerivation, base, hmatrix, hmatrix-gsl, mtl, mwc-random + , newtype-generics, optparse-applicative, QuickCheck, streaming + , utility-ht, validation, vector + }: + mkDerivation { + pname = "HABQT"; + version = "0.1.0.0"; + sha256 = "02lni851v2997im77izycl3x2yw84sm8lsa1alpb0yp6y2f1ghay"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base hmatrix hmatrix-gsl mtl mwc-random newtype-generics streaming + utility-ht validation vector + ]; + executableHaskellDepends = [ base optparse-applicative streaming ]; + testHaskellDepends = [ + base hmatrix mwc-random newtype-generics QuickCheck streaming + utility-ht vector + ]; + description = "Hierarchical adaptive Bayesian quantum tomography for quantum bits"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "HARM" = callPackage ({ mkDerivation, array, base }: mkDerivation { @@ -9990,15 +10015,15 @@ self: { }: mkDerivation { pname = "HsYAML"; - version = "0.1.1.1"; - sha256 = "1qxblx2s67n4jmnzai00hqp92iz3kvmzl1pqyx6l9zgllmh94zrh"; + version = "0.1.1.2"; + sha256 = "1100yzyxbvin48q3dgmzpnhz1gbqaxnkpnwy7ywzj2wrvwrr8hjx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring containers dlist mtl parsec text ]; description = "Pure Haskell YAML 1.2 parser"; - license = stdenv.lib.licenses.gpl3; + license = stdenv.lib.licenses.gpl2; }) {}; "Hsed" = callPackage @@ -10336,8 +10361,8 @@ self: { ({ mkDerivation, base, containers }: mkDerivation { pname = "IntGraph"; - version = "0.1.0.0"; - sha256 = "0b7hycjl4mrs47377h4yisy1kcypz7im9x0rs6w0jblczf7gmk46"; + version = "0.1.1.0"; + sha256 = "08cvlvqvjzcxsnqs9lh493y9yjxv5wcfaqc4pq9rl3wlhixjlrp6"; libraryHaskellDepends = [ base containers ]; testHaskellDepends = [ base containers ]; description = "Dynamically sized graph library"; @@ -21369,8 +21394,8 @@ self: { pname = "ad"; version = "4.3.5"; sha256 = "0q4dvi02k21jq8xf0ywgmcs5mph4hpx5s3y3pj839y0g3x5paplw"; - revision = "4"; - editedCabalFile = "0n1r7ylnabfcd3x88j93r3fjbz8hdlp3hda0zaw7h5cawc7zy01j"; + revision = "5"; + editedCabalFile = "0yzyfqhsafzaqzj8wmjrj5ghm6jwbxya3wxc9sjl59j9q20jc4nq"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ array base comonad containers data-reify erf free nats reflection @@ -21504,6 +21529,8 @@ self: { pname = "adjunctions"; version = "4.4"; sha256 = "1sbal7cbhm12crfnfhkk322jnzgx7lhw3jzq0p463bipagsjwz2h"; + revision = "1"; + editedCabalFile = "0582nnn3fab63nd7ng8smk2c8j7pciiyzfj1na34wqid2hs675as"; libraryHaskellDepends = [ array base comonad containers contravariant distributive free mtl profunctors semigroupoids semigroups tagged transformers @@ -22570,6 +22597,7 @@ self: { executableHaskellDepends = [ base containers uuagc uulib ]; description = "Attribute Grammar picture generation"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "agda-server" = callPackage @@ -22841,14 +22869,15 @@ self: { }: mkDerivation { pname = "aivika"; - version = "5.7"; - sha256 = "1zhzb9pchpj9vk0zc3wb9bpxbw7zfn63m7ng37z46lwyv5s55d5m"; + version = "5.8"; + sha256 = "0yj022qf7afxs8md45qxz42n9i5g60572lz330szbm9ziwdwb1wp"; libraryHaskellDepends = [ array base binary containers deepseq exceptions mtl mwc-random random semigroups vector ]; description = "A multi-method simulation library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-branches" = callPackage @@ -22864,6 +22893,7 @@ self: { ]; description = "Nested discrete event simulation module for the Aivika library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-distributed" = callPackage @@ -22881,6 +22911,7 @@ self: { ]; description = "Parallel distributed discrete event simulation module for the Aivika library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-experiment" = callPackage @@ -22897,6 +22928,7 @@ self: { ]; description = "Simulation experiments for the Aivika library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-experiment-cairo" = callPackage @@ -22913,6 +22945,7 @@ self: { ]; description = "Cairo-based charting backend for the Aivika simulation library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-experiment-chart" = callPackage @@ -22930,6 +22963,7 @@ self: { ]; description = "Simulation experiments with charting for the Aivika library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-experiment-diagrams" = callPackage @@ -22963,6 +22997,7 @@ self: { ]; description = "GPSS-like DSL for Aivika"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-lattice" = callPackage @@ -22979,6 +23014,7 @@ self: { ]; description = "Nested discrete event simulation module for the Aivika library using lattice"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-realtime" = callPackage @@ -22995,6 +23031,7 @@ self: { ]; description = "Soft real-time simulation module for the Aivika library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aivika-transformers" = callPackage @@ -23003,14 +23040,15 @@ self: { }: mkDerivation { pname = "aivika-transformers"; - version = "5.7"; - sha256 = "1nwffb0x7lzl52xqki415dgmag9dg66jv45qirdnmkjs33x0by3r"; + version = "5.8"; + sha256 = "0mndlxvi98k74q2qvzc7wry8ndcgmyi9ph1sas42cbc7a2djnlf0"; libraryHaskellDepends = [ aivika array base containers exceptions mtl mwc-random random semigroups vector ]; description = "Transformers for the Aivika simulation library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ajhc" = callPackage @@ -23419,6 +23457,7 @@ self: { ]; description = "A client implementing the Algolia search API"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "align" = callPackage @@ -23800,6 +23839,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "alternators_1_0_0_0" = callPackage + ({ mkDerivation, base, lens, mmorph, mtl, newtype-generics, stm + , transformers + }: + mkDerivation { + pname = "alternators"; + version = "1.0.0.0"; + sha256 = "0ffk7xhx7n7h5mhb43ss6kprm9mzc0jzdnagz5wdsgqr8a5mnfa4"; + libraryHaskellDepends = [ + base lens mmorph mtl newtype-generics stm transformers + ]; + description = "Handy functions when using transformers"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "altfloat" = callPackage ({ mkDerivation, base, ghc-prim, integer-gmp }: mkDerivation { @@ -26553,17 +26608,18 @@ self: { "amqp-utils" = callPackage ({ mkDerivation, amqp, base, bytestring, connection, containers - , data-default-class, process, text, time, tls, x509-system + , data-default-class, hinotify, magic, process, text, time, tls + , unix, x509-system }: mkDerivation { pname = "amqp-utils"; - version = "0.3.0.0"; - sha256 = "05yz8pgj1g8m2y35psvkkpf0xr9dr0qz0andqv452w0ak7vy54bk"; + version = "0.3.2.1"; + sha256 = "0l7rvxlxqykx0mpg2jk8vx0jib0ibn6ghhl1n28asmqkvx7y6989"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ amqp base bytestring connection containers data-default-class - process text time tls x509-system + hinotify magic process text time tls unix x509-system ]; description = "Generic Haskell AMQP Consumer"; license = stdenv.lib.licenses.gpl3; @@ -27075,8 +27131,8 @@ self: { pname = "ansi-pretty"; version = "0.1.2.1"; sha256 = "1ill2dlzbxn97smkzdqcjfx9z3fw7pgwvz6w36d92n8p7zwik23h"; - revision = "4"; - editedCabalFile = "0yp5wihvl22vfcr0x22xdbvrk79hcahx1kyfpwpvv0jkahc5c03q"; + revision = "5"; + editedCabalFile = "18vg7p8ymwk3kfhvg8cn8vq574x52n8a2c7ihrg4jg1gdsdrn0vi"; libraryHaskellDepends = [ aeson ansi-wl-pprint array base bytestring containers generics-sop nats scientific semigroups tagged text time unordered-containers @@ -29457,6 +29513,7 @@ self: { testHaskellDepends = [ base hspec ]; description = "Asset map support for the JavaScript broccoli-asset-rev library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "assimp" = callPackage @@ -30130,6 +30187,8 @@ self: { pname = "atomic-primops"; version = "0.8.2"; sha256 = "0cyr2x6xqz6s233znrz9rnrfj56m9bmnawwnka0lsqqy1hp8gy37"; + revision = "1"; + editedCabalFile = "0gdcd84x2s4jiry0was74rzv9l53an1q6ad8jiaj37fr4fim0wcc"; libraryHaskellDepends = [ base ghc-prim primitive ]; description = "A safe approach to CAS and other atomic ops in Haskell"; license = stdenv.lib.licenses.bsd3; @@ -30271,8 +30330,8 @@ self: { }: mkDerivation { pname = "ats-pkg"; - version = "2.11.0.8"; - sha256 = "1nk802nm3s5dygk1ldhn4djxwz9priqsm3hpd9wkb6pd80w945m5"; + version = "2.11.0.10"; + sha256 = "0090max9idmqkfppzpwhmnibkmzin9gr6x1r94i0dziaa7x4iwd8"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal cli-setup ]; @@ -31280,8 +31339,8 @@ self: { }: mkDerivation { pname = "avro"; - version = "0.3.0.5"; - sha256 = "04hzx9k3m6k5vlrj9yv02z5x3zq5b5878aa66fj8x2y8306zry39"; + version = "0.3.1.1"; + sha256 = "0hw8r3xv0823qz8w0vs0chyz21bv5hn8013c9684zss5jqygs2yx"; libraryHaskellDepends = [ aeson array base base16-bytestring binary bytestring containers data-binary-ieee754 entropy fail hashable mtl pure-zlib scientific @@ -32625,8 +32684,8 @@ self: { }: mkDerivation { pname = "barbies"; - version = "0.1.2.0"; - sha256 = "1n8m6qi30fz5xx67v0l7dsirrpd8h0smb7qd8d1q3w83yi606kvl"; + version = "0.1.3.1"; + sha256 = "0jddnjygqmcczhg2s1ifqgmbd1liqrkhnza4bmcplwmqkg4bkbr5"; libraryHaskellDepends = [ base bifunctors ]; testHaskellDepends = [ base QuickCheck tasty tasty-quickcheck ]; description = "Classes for working with types that can change clothes"; @@ -32769,12 +32828,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "base-compat_0_10_1" = callPackage + "base-compat_0_10_4" = callPackage ({ mkDerivation, base, unix }: mkDerivation { pname = "base-compat"; - version = "0.10.1"; - sha256 = "0vdv28qylnpqhq6jnhiqvnc0rmbrb0dvnsfdvp094sm7sj9j3v5j"; + version = "0.10.4"; + sha256 = "0ksp990gxs731mq19rzbxrbs43nazfljjc8krlx5bjqblw3kfs8d"; libraryHaskellDepends = [ base unix ]; description = "A compatibility layer for base"; license = stdenv.lib.licenses.mit; @@ -32797,6 +32856,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "base-compat-batteries_0_10_4" = callPackage + ({ mkDerivation, base, base-compat, contravariant, hspec + , hspec-discover, QuickCheck + }: + mkDerivation { + pname = "base-compat-batteries"; + version = "0.10.4"; + sha256 = "11k4k2n88kyaa41431cmjwmnlnhjbqx95r67mgrdxfyqxxwnxwp8"; + libraryHaskellDepends = [ base base-compat contravariant ]; + testHaskellDepends = [ base hspec QuickCheck ]; + testToolDepends = [ hspec-discover ]; + description = "base-compat with extra batteries"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "base-compat-migrate" = callPackage ({ mkDerivation, base, base-compat }: mkDerivation { @@ -32890,6 +32965,21 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "base-orphans_0_8" = callPackage + ({ mkDerivation, base, ghc-prim, hspec, hspec-discover, QuickCheck + }: + mkDerivation { + pname = "base-orphans"; + version = "0.8"; + sha256 = "05s8s9zbnvcwnnd8z23jbdcjpd1h07c8fgaw0g9jl8mlpxbcdvmc"; + libraryHaskellDepends = [ base ghc-prim ]; + testHaskellDepends = [ base hspec QuickCheck ]; + testToolDepends = [ hspec-discover ]; + description = "Backwards-compatible orphan instances for base"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "base-prelude" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -33134,8 +33224,8 @@ self: { }: mkDerivation { pname = "baserock-schema"; - version = "0.0.3.4"; - sha256 = "19r072s5032wcs4j647naixmk3j7h4ppniar78f6hxlkcz1hsc10"; + version = "0.0.3.5"; + sha256 = "0f12xazhmcw82ck3byjwcv7z15mzz0ihkzbdb2d6vph7719yxbg3"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -33152,6 +33242,7 @@ self: { ]; description = "Baserock Definitions Schema"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "basex-client" = callPackage @@ -33583,6 +33674,7 @@ self: { ]; description = "BDCS API Server"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs.gnome3) libgit2-glib;}; "bdd" = callPackage @@ -33655,8 +33747,8 @@ self: { }: mkDerivation { pname = "beam-core"; - version = "0.7.2.1"; - sha256 = "0v9mspr3r7g5n73pgdwipgx2z23cd5g537g8afd1hj22p7d993jw"; + version = "0.7.2.2"; + sha256 = "160ga0w0i1l4nbag6jg8wn3a3csid93x6fdd4j4pah2zk7dswc8j"; libraryHaskellDepends = [ aeson base bytestring containers dlist free ghc-prim hashable microlens mtl network-uri tagged text time vector-sized @@ -33677,8 +33769,8 @@ self: { }: mkDerivation { pname = "beam-migrate"; - version = "0.3.2.0"; - sha256 = "1a6m27cpa2xlwmwfi1374p3a23i2hm8fjfsl6bdn0zpnawgi5rhf"; + version = "0.3.2.1"; + sha256 = "0wwkyg87wf3qcj8c5j3ammdkmjacgzw35pgxbq75bvfkx8k5j69d"; libraryHaskellDepends = [ aeson base beam-core bytestring containers deepseq dependent-map dependent-sum free ghc-prim hashable haskell-src-exts mtl parallel @@ -33699,8 +33791,8 @@ self: { }: mkDerivation { pname = "beam-postgres"; - version = "0.3.2.0"; - sha256 = "09iv1ji1kpavi42z0p4nng057h0q5f16cdsx0yiq53c3ji3yvbnf"; + version = "0.3.2.2"; + sha256 = "1wa2ajwrgha5wbbynh68jbqbivfvmr7habnn89yhhfh6gmxqj5yk"; libraryHaskellDepends = [ aeson base beam-core beam-migrate bytestring case-insensitive conduit free hashable haskell-src-exts lifted-base monad-control @@ -33719,8 +33811,8 @@ self: { }: mkDerivation { pname = "beam-sqlite"; - version = "0.3.2.1"; - sha256 = "1ijgqlywb7gvig32zrhgryq0nkfabyxvxy81c36x9zfpyj36x04k"; + version = "0.3.2.2"; + sha256 = "1k33bbh6zhhm7h88q9rwigrj5fisfgbwza6mfrhbygdpzck473hp"; libraryHaskellDepends = [ aeson attoparsec base beam-core beam-migrate bytestring dlist free hashable mtl network-uri scientific sqlite-simple text time unix @@ -33917,14 +34009,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "bench_1_0_10" = callPackage + "bench_1_0_11" = callPackage ({ mkDerivation, base, criterion, optparse-applicative, process , silently, text, turtle }: mkDerivation { pname = "bench"; - version = "1.0.10"; - sha256 = "0h5lqxzx170a742rjqlngikar58krzyr772hd8f92zg85p1qgqzx"; + version = "1.0.11"; + sha256 = "15rv999kajlmhvd1cajcn8vir3r950c1v2njyywpqaz6anm6ykm8"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -34349,8 +34441,8 @@ self: { pname = "bifunctors"; version = "5.5.2"; sha256 = "04fbsysm6zl8kmvqgffmrqa9bxl9dl2gibrd51asqzg737mb4ark"; - revision = "2"; - editedCabalFile = "0glrvir6md8a1ncr6ah95a5mnn7n9v8yl85afvdx24i9z1nr1319"; + revision = "3"; + editedCabalFile = "102wb8w6b3g6chk4pr9jgz73vm11n10wbn2xg3d90c71rn8x9p0f"; libraryHaskellDepends = [ base base-orphans comonad containers semigroups tagged template-haskell th-abstraction transformers transformers-compat @@ -36083,6 +36175,7 @@ self: { ]; description = "bioinformatics support library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "bioinformatics-toolkit" = callPackage @@ -37119,8 +37212,8 @@ self: { pname = "blank-canvas"; version = "0.6.3"; sha256 = "1d10ngvsgi2hz6xick59rkq1wzfbsgckply2jmg6gz9mf3zj97bk"; - revision = "1"; - editedCabalFile = "0z3ya0rj3s7h6flqj9k5qib7pvvfimaab62z6yyc68zpfwkdzb36"; + revision = "2"; + editedCabalFile = "0sybv2swx9gwpkjh704xfmilm9jhdb66jqc296agpzp85s2s75zz"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base base-compat-batteries base64-bytestring bytestring @@ -38339,8 +38432,8 @@ self: { ({ mkDerivation, base, boolector, c2hs, containers, mtl }: mkDerivation { pname = "boolector"; - version = "0.0.0.1"; - sha256 = "00ngv3asmn58bli7hb3033yn98zj0680m2skid2021p3kv4km3c4"; + version = "0.0.0.2"; + sha256 = "1w7ii42vxm4yyh32avx0x53h1fc1fjfihs15xn9igz5j46qc707j"; libraryHaskellDepends = [ base containers mtl ]; librarySystemDepends = [ boolector ]; libraryToolDepends = [ c2hs ]; @@ -38612,8 +38705,8 @@ self: { pname = "bound"; version = "2.0.1"; sha256 = "0xmvkwambzmji1czxipl9cms5l3v98765b9spmb3wn5n6dpj0ji9"; - revision = "5"; - editedCabalFile = "02xvpawr73xq11lwkj1rp96h3pgpgcp693gawc3wn5zksrr0986i"; + revision = "6"; + editedCabalFile = "18fqzxy3f8r09jwcsfzjlrpvnlz711jq5gcjp4dal1pvsbbw6i09"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base bifunctors binary bytes cereal comonad deepseq hashable mmorph @@ -39789,17 +39882,17 @@ self: { }) {}; "burnt-explorer" = callPackage - ({ mkDerivation, aeson, base, bitcoin-script, bytestring, process - , scientific + ({ mkDerivation, aeson, base, bitcoin-script, bytestring, cassava + , process, scientific }: mkDerivation { pname = "burnt-explorer"; - version = "1.0.0"; - sha256 = "1lddgjbm62k7avxvq8mlw7z4swbjavffk05nx5nla5fll7v4q219"; + version = "2.0.0"; + sha256 = "08r0hzpzyc8frx1k6rxv6b37hbz9yr5gfjsd9ikybx9m78cbgg3n"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - aeson base bitcoin-script bytestring process scientific + aeson base bitcoin-script bytestring cassava process scientific ]; description = "List OP_RETURN cryptocurrency transaction outputs"; license = stdenv.lib.licenses.asl20; @@ -40155,6 +40248,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "bytes_0_15_5" = callPackage + ({ mkDerivation, base, binary, bytestring, Cabal, cabal-doctest + , cereal, containers, directory, doctest, filepath, hashable, mtl + , scientific, text, time, transformers, transformers-compat + , unordered-containers, void + }: + mkDerivation { + pname = "bytes"; + version = "0.15.5"; + sha256 = "063il2vrn0p88r9gzndh4ijs0mxj37khkc9ym9bqdsv7ngk3b683"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + base binary bytestring cereal containers hashable mtl scientific + text time transformers transformers-compat unordered-containers + void + ]; + testHaskellDepends = [ base directory doctest filepath ]; + description = "Sharing code for serialization between binary and cereal"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "byteset" = callPackage ({ mkDerivation, base, binary }: mkDerivation { @@ -40560,6 +40675,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "bytestring-tree-builder_0_2_7_2" = callPackage + ({ mkDerivation, base, base-prelude, bytestring, criterion, deepseq + , QuickCheck, quickcheck-instances, semigroups, tasty, tasty-hunit + , tasty-quickcheck, text + }: + mkDerivation { + pname = "bytestring-tree-builder"; + version = "0.2.7.2"; + sha256 = "03h2nmhyrr63gw4xmflsrmwf80gvayhs32wnpg3k9aqfjzpz4bd1"; + libraryHaskellDepends = [ + base base-prelude bytestring semigroups text + ]; + testHaskellDepends = [ + base-prelude bytestring QuickCheck quickcheck-instances tasty + tasty-hunit tasty-quickcheck + ]; + benchmarkHaskellDepends = [ + base-prelude bytestring criterion deepseq + ]; + description = "A very efficient ByteString builder implementation based on the binary tree"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "bytestring-trie" = callPackage ({ mkDerivation, base, binary, bytestring }: mkDerivation { @@ -40719,6 +40858,7 @@ self: { testHaskellDepends = [ base ]; description = "Simpe mosquito MQTT binding able to work with the Amazons IoT"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) mosquitto;}; "c-storable" = callPackage @@ -41024,8 +41164,8 @@ self: { }: mkDerivation { pname = "cabal-debian"; - version = "4.38"; - sha256 = "0c5c3xd3lipnwdyvnvlxk4wk8gi2akbjwmhnc1bsdyr6g6ihai81"; + version = "4.38.1"; + sha256 = "1sniyy2pappjjhvw1bma593gxdcjlg3j2afx8jgb70h6cbl3769n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -41995,6 +42135,100 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "cachix" = callPackage + ({ mkDerivation, async, base, base16-bytestring, base64-bytestring + , bifunctors, bytestring, cachix-api, conduit, conduit-combinators + , conduit-extra, cookie, cryptonite, dhall, directory, ed25519 + , fsnotify, here, hspec, http-client, http-client-tls, http-conduit + , http-types, lzma-conduit, megaparsec, memory, mmorph + , optparse-applicative, process, protolude, resourcet, servant + , servant-auth, servant-auth-client, servant-client + , servant-generic, servant-streaming-client, streaming, text, unix + , uri-bytestring, versions + }: + mkDerivation { + pname = "cachix"; + version = "0.1.0.0"; + sha256 = "1q2yglmsg5mgky7hmv8na3qpm9ywdn0b0apb7pcn9sib11nbwg5z"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + async base base16-bytestring base64-bytestring bifunctors + bytestring cachix-api conduit conduit-combinators conduit-extra + cookie cryptonite dhall directory ed25519 fsnotify here http-client + http-client-tls http-conduit http-types lzma-conduit megaparsec + memory mmorph optparse-applicative process protolude resourcet + servant servant-auth servant-auth-client servant-client + servant-generic servant-streaming-client streaming text unix + uri-bytestring versions + ]; + executableHaskellDepends = [ + async base base16-bytestring base64-bytestring bifunctors + bytestring cachix-api conduit conduit-combinators conduit-extra + cookie cryptonite dhall directory ed25519 fsnotify here http-client + http-client-tls http-conduit http-types lzma-conduit megaparsec + memory mmorph optparse-applicative process protolude resourcet + servant servant-auth servant-auth-client servant-client + servant-generic servant-streaming-client streaming text unix + uri-bytestring versions + ]; + testHaskellDepends = [ + async base base16-bytestring base64-bytestring bifunctors + bytestring cachix-api conduit conduit-combinators conduit-extra + cookie cryptonite dhall directory ed25519 fsnotify here hspec + http-client http-client-tls http-conduit http-types lzma-conduit + megaparsec memory mmorph optparse-applicative process protolude + resourcet servant servant-auth servant-auth-client servant-client + servant-generic servant-streaming-client streaming text unix + uri-bytestring versions + ]; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "cachix-api" = callPackage + ({ mkDerivation, aeson, amazonka, base, base16-bytestring + , bytestring, conduit, conduit-combinators, cookie, cryptonite + , hspec, http-api-data, http-media, lens, memory, protolude + , servant, servant-auth, servant-auth-server, servant-auth-swagger + , servant-generic, servant-streaming, servant-swagger + , servant-swagger-ui-core, string-conv, swagger2, text + , transformers + }: + mkDerivation { + pname = "cachix-api"; + version = "0.1.0.0"; + sha256 = "13nqy96m5f0kz969ix64d8il5bakhsr9wv550zab9mks3qlz6s6x"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson amazonka base base16-bytestring bytestring conduit + conduit-combinators cookie cryptonite http-api-data http-media lens + memory servant servant-auth servant-auth-server + servant-auth-swagger servant-generic servant-streaming + servant-swagger servant-swagger-ui-core string-conv swagger2 text + transformers + ]; + executableHaskellDepends = [ + aeson amazonka base base16-bytestring bytestring conduit + conduit-combinators cookie cryptonite http-api-data http-media lens + memory servant servant-auth servant-auth-server + servant-auth-swagger servant-generic servant-streaming + servant-swagger servant-swagger-ui-core string-conv swagger2 text + transformers + ]; + testHaskellDepends = [ + aeson amazonka base base16-bytestring bytestring conduit + conduit-combinators cookie cryptonite hspec http-api-data + http-media lens memory protolude servant servant-auth + servant-auth-server servant-auth-swagger servant-generic + servant-streaming servant-swagger servant-swagger-ui-core + string-conv swagger2 text transformers + ]; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "cacophony" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, base16-bytestring , bytestring, criterion, cryptonite, deepseq, directory, exceptions @@ -42853,19 +43087,23 @@ self: { }) {}; "casa-abbreviations-and-acronyms" = callPackage - ({ mkDerivation, base, directory, doctest, filepath, QuickCheck - , template-haskell + ({ mkDerivation, base, bytestring, containers, fuzzy, lens + , monoid-subclasses, optparse-applicative, these, wreq }: mkDerivation { pname = "casa-abbreviations-and-acronyms"; - version = "0.0.1"; - sha256 = "12pcw19jf31kvccqfvsxk49ff7zldq0r3kf6zabvzyr9qbas9gjy"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ - base directory doctest filepath QuickCheck template-haskell + version = "0.0.5"; + sha256 = "1r8p084kfwyg9ivqk1g2c0vhi0dfka3qbpwqj2sh0xh1gfnxhcsv"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers fuzzy lens monoid-subclasses these wreq + ]; + executableHaskellDepends = [ + base fuzzy lens optparse-applicative ]; description = "CASA Abbreviations and Acronyms"; - license = "unknown"; + license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -43910,8 +44148,8 @@ self: { }: mkDerivation { pname = "cdeps"; - version = "0.1.1.4"; - sha256 = "0gqaa8a3q84k5shar58kc5kfdq4f3zp2pz9pg8h78d3fibyz5cmw"; + version = "0.1.1.5"; + sha256 = "0vsljgsgrgb072xk53f02xqrlyp3zv94skmj0q5446ca7i3grppk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -46080,21 +46318,23 @@ self: { }) {}; "clang-pure" = callPackage - ({ mkDerivation, base, bytestring, clang, containers, contravariant - , inline-c, microlens, microlens-contra, singletons, stm - , template-haskell, vector + ({ mkDerivation, base, bytestring, Cabal, clang, containers + , contravariant, inline-c, lens, microlens, microlens-contra + , process, singletons, stm, template-haskell, vector }: mkDerivation { pname = "clang-pure"; - version = "0.2.0.2"; - sha256 = "0k30w0hdvhvdbv03jjs0284639njlcs60fljfffskmpslcxqzm7s"; + version = "0.2.0.3"; + sha256 = "1x7mw4qw5mfkv6nhqaxp9pgry7xdsb3x24fvkpb7c2iigv1yyk8n"; isLibrary = true; isExecutable = true; + setupHaskellDepends = [ base Cabal inline-c process ]; libraryHaskellDepends = [ base bytestring containers contravariant inline-c microlens microlens-contra singletons stm template-haskell vector ]; librarySystemDepends = [ clang ]; + testHaskellDepends = [ base bytestring lens ]; description = "Pure C++ code analysis with libclang"; license = stdenv.lib.licenses.asl20; hydraPlatforms = stdenv.lib.platforms.none; @@ -46165,10 +46405,8 @@ self: { }: mkDerivation { pname = "clash-ghc"; - version = "0.99.1"; - sha256 = "0ybkjqza4wl6v4wghrbm87j7ns3qgsg4lb8g6i8rj9nb8yn43jsm"; - revision = "1"; - editedCabalFile = "1j11iplvng6m882c013fr0jzni1sqmvcw28k5p9icl3dgad990kf"; + version = "0.99.2"; + sha256 = "1f57rxw4v17c8hxxkr41zz9rvwmqm88szvyz44jihkr9m2y79v24"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -46195,8 +46433,8 @@ self: { }: mkDerivation { pname = "clash-lib"; - version = "0.99.1"; - sha256 = "1jrfvi3jxwmzc32nnf2kjyciws649ldixc38g7acsbapkpjhcfy5"; + version = "0.99.2"; + sha256 = "0spkxkh06dqdyv6wjj9511lb0ahj5qjb5q9pyd1nc9kczbv3spvf"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson ansi-wl-pprint attoparsec base bytestring clash-prelude @@ -46234,8 +46472,8 @@ self: { }: mkDerivation { pname = "clash-prelude"; - version = "0.99.1"; - sha256 = "03yys72aq9zhl6g9lw1mvx7ds90ch6jx90n7pv9995lg1nhc83fd"; + version = "0.99.2"; + sha256 = "1gs4f3kg2yq2a9y2xypm4k8mdp141889r7kh9495w3qwljhhpb7i"; libraryHaskellDepends = [ array base bifunctors constraints data-binary-ieee754 data-default deepseq ghc-prim ghc-typelits-extra ghc-typelits-knownnat @@ -46974,6 +47212,7 @@ self: { ]; description = "Command Line Interface File Manager"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "clingo" = callPackage @@ -47585,6 +47824,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "cmark-gfm_0_1_4" = callPackage + ({ mkDerivation, base, blaze-html, bytestring, cheapskate + , criterion, discount, HUnit, markdown, sundown, text + }: + mkDerivation { + pname = "cmark-gfm"; + version = "0.1.4"; + sha256 = "0jjcl7pfack8aksx34m1f80ll0y62ba1fyzdn77xbs2rvlvjzw0m"; + libraryHaskellDepends = [ base bytestring text ]; + testHaskellDepends = [ base HUnit text ]; + benchmarkHaskellDepends = [ + base blaze-html cheapskate criterion discount markdown sundown text + ]; + description = "Fast, accurate GitHub Flavored Markdown parser and renderer"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "cmark-highlight" = callPackage ({ mkDerivation, base, blaze-html, cmark, highlighting-kate, text }: @@ -48465,14 +48722,14 @@ self: { "colonnade" = callPackage ({ mkDerivation, base, bytestring, contravariant, doctest - , profunctors, semigroups, text, vector + , profunctors, text, vector }: mkDerivation { pname = "colonnade"; - version = "1.2.0"; - sha256 = "0a9xh1vg64wyby370djsdcvrhg0vx2bdrwdh7csqri9nbxpzj8jn"; + version = "1.2.0.1"; + sha256 = "12ryrg42qgg1hnflz757fik1lrg51l9bg4145bb678y9c1ixisrj"; libraryHaskellDepends = [ - base bytestring contravariant profunctors semigroups text vector + base bytestring contravariant profunctors text vector ]; testHaskellDepends = [ base doctest ]; description = "Generic types and functions for columnar encoding and decoding"; @@ -48658,6 +48915,8 @@ self: { pname = "colour-space"; version = "0.1.4.0"; sha256 = "0sr341chqhngm7ihyy3ym3w345sk101gznw80iksjwxjg3iiqxmq"; + revision = "1"; + editedCabalFile = "1n9n76g9zjp1i02f964dlfy65m978m8whbcivd063pf1acp9njax"; libraryHaskellDepends = [ base colour constrained-categories JuicyPixels linear linearmap-category manifolds semigroups vector-space @@ -49128,6 +49387,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "comonad_5_0_4" = callPackage + ({ mkDerivation, base, Cabal, cabal-doctest, containers + , contravariant, distributive, doctest, semigroups, tagged + , transformers, transformers-compat + }: + mkDerivation { + pname = "comonad"; + version = "5.0.4"; + sha256 = "09g870c4flp4k3fgbibsd0mmfjani1qcpbcl685v8x89kxzrva3q"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + base containers contravariant distributive semigroups tagged + transformers transformers-compat + ]; + testHaskellDepends = [ base doctest ]; + description = "Comonads"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "comonad-extras" = callPackage ({ mkDerivation, array, base, comonad, containers, distributive , semigroupoids, transformers @@ -49746,12 +50025,12 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "composition-prelude_1_5_0_5" = callPackage + "composition-prelude_1_5_0_6" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "composition-prelude"; - version = "1.5.0.5"; - sha256 = "0nap1qfvp7zjw2z0fz1z700wx27wlgihavp2x4h5jz9jc80ssmra"; + version = "1.5.0.6"; + sha256 = "13rjy6i48nsy3nqk79b4cqgiapjg11knzkzajmxy6ps6iq308vjn"; libraryHaskellDepends = [ base ]; description = "Higher-order function combinators"; license = stdenv.lib.licenses.bsd3; @@ -50162,14 +50441,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "concurrency_1_5_0_0" = callPackage + "concurrency_1_6_0_0" = callPackage ({ mkDerivation, array, atomic-primops, base, exceptions , monad-control, mtl, stm, transformers }: mkDerivation { pname = "concurrency"; - version = "1.5.0.0"; - sha256 = "0c07jkhsi9fy3ssjs19511dxsqq62yqbh9qd90r666wdhs0v86qh"; + version = "1.6.0.0"; + sha256 = "14zbwbp5mgnp3nv40qirnw1b8pv2kp1nqlhg36dnhw7l0mq5dwlk"; libraryHaskellDepends = [ array atomic-primops base exceptions monad-control mtl stm transformers @@ -50289,6 +50568,23 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; + "concurrent-output_1_10_6" = callPackage + ({ mkDerivation, ansi-terminal, async, base, directory, exceptions + , process, stm, terminal-size, text, transformers, unix + }: + mkDerivation { + pname = "concurrent-output"; + version = "1.10.6"; + sha256 = "1qlp1vij4qgcrkw8ym5xdc0pgfwklbhsfh56sgayy3cvpvcac093"; + libraryHaskellDepends = [ + ansi-terminal async base directory exceptions process stm + terminal-size text transformers unix + ]; + description = "Ungarble output from several threads or commands"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "concurrent-rpc" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -51579,6 +51875,26 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; + "constraints_0_10_1" = callPackage + ({ mkDerivation, base, binary, deepseq, ghc-prim, hashable, hspec + , hspec-discover, mtl, semigroups, transformers + , transformers-compat + }: + mkDerivation { + pname = "constraints"; + version = "0.10.1"; + sha256 = "1xy3vv78jxc17hm0z7qqspxjwv7l2jbcbj670yrl2f053qkfr02q"; + libraryHaskellDepends = [ + base binary deepseq ghc-prim hashable mtl semigroups transformers + transformers-compat + ]; + testHaskellDepends = [ base hspec ]; + testToolDepends = [ hspec-discover ]; + description = "Constraint manipulation"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "constraints-emerge" = callPackage ({ mkDerivation, base, constraints, containers, ghc, hashable , hspec, transformers @@ -51686,8 +52002,8 @@ self: { ({ mkDerivation, base, containers, convert, lens, text }: mkDerivation { pname = "container"; - version = "1.1.0"; - sha256 = "19x7jvzc499y4349gallwwy4wpw4pf4azbsp4gr8ly4j0flfgk6g"; + version = "1.1.1"; + sha256 = "1kmi57bx9bahr2vc0b89rgy68r26vn0y531m53fs4avdcadnjl9q"; libraryHaskellDepends = [ base containers convert lens text ]; description = "Containers abstraction and utilities"; license = stdenv.lib.licenses.asl20; @@ -51978,6 +52294,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "contravariant_1_5" = callPackage + ({ mkDerivation, base, StateVar, transformers }: + mkDerivation { + pname = "contravariant"; + version = "1.5"; + sha256 = "1hn31wl0jai2jrwc6cz19aflbv9xbyl3m5ab57zzysddjav6gw3f"; + libraryHaskellDepends = [ base StateVar transformers ]; + description = "Contravariant functors"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "contravariant-extras" = callPackage ({ mkDerivation, base, base-prelude, contravariant, semigroups , template-haskell, tuple-th @@ -52926,6 +53254,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "country_0_1_6" = callPackage + ({ mkDerivation, aeson, attoparsec, base, bytestring, deepseq + , ghc-prim, hashable, primitive, scientific, text + , unordered-containers + }: + mkDerivation { + pname = "country"; + version = "0.1.6"; + sha256 = "0a4r2jnp15xy18s6xpd4p10cgq3hd8qqzhy5lakmzymivwq6xcq9"; + libraryHaskellDepends = [ + aeson attoparsec base bytestring deepseq ghc-prim hashable + primitive scientific text unordered-containers + ]; + testHaskellDepends = [ base ]; + description = "Country data type and functions"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "country-codes" = callPackage ({ mkDerivation, aeson, base, HTF, HUnit, shakespeare, text }: mkDerivation { @@ -53959,28 +54306,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "criterion_1_4_1_0" = callPackage + "criterion_1_5_0_0" = callPackage ({ mkDerivation, aeson, ansi-wl-pprint, base, base-compat , base-compat-batteries, binary, bytestring, cassava, code-page - , containers, deepseq, directory, exceptions, filepath, Glob, HUnit - , js-flot, js-jquery, microstache, mtl, mwc-random - , optparse-applicative, parsec, QuickCheck, semigroups, statistics - , tasty, tasty-hunit, tasty-quickcheck, text, time, transformers - , transformers-compat, vector, vector-algorithms + , containers, criterion-measurement, deepseq, directory, exceptions + , filepath, Glob, HUnit, js-flot, js-jquery, microstache, mtl + , mwc-random, optparse-applicative, parsec, QuickCheck, semigroups + , statistics, tasty, tasty-hunit, tasty-quickcheck, text, time + , transformers, transformers-compat, vector, vector-algorithms }: mkDerivation { pname = "criterion"; - version = "1.4.1.0"; - sha256 = "0v429araqkcw3wwwi6fsp0g7g1hy3l47p061lcy7r4m7d9khd4y4"; + version = "1.5.0.0"; + sha256 = "0j9qaahlnjnwp8glzxn83924mdpnb38inyq696bs2fbdjzh8nq0x"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson ansi-wl-pprint base base-compat-batteries binary bytestring - cassava code-page containers deepseq directory exceptions filepath - Glob js-flot js-jquery microstache mtl mwc-random - optparse-applicative parsec semigroups statistics text time - transformers transformers-compat vector vector-algorithms + cassava code-page containers criterion-measurement deepseq + directory exceptions filepath Glob js-flot js-jquery microstache + mtl mwc-random optparse-applicative parsec semigroups statistics + text time transformers transformers-compat vector vector-algorithms ]; executableHaskellDepends = [ base base-compat-batteries optparse-applicative semigroups @@ -53995,6 +54342,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "criterion-measurement" = callPackage + ({ mkDerivation, aeson, base, base-compat, binary, containers + , deepseq, vector + }: + mkDerivation { + pname = "criterion-measurement"; + version = "0.1.0.0"; + sha256 = "1kn6xcnmjab0rqxjjgrdpbm5z919jwmsraqnpxqkazswgbbj6r7y"; + libraryHaskellDepends = [ + aeson base base-compat binary containers deepseq vector + ]; + description = "Criterion measurement functionality and associated types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "criterion-plus" = callPackage ({ mkDerivation, base, criterion, deepseq, HTF, HUnit, loch-th , monad-control, mtl, optparse-applicative, placeholders @@ -54981,8 +55343,8 @@ self: { }: mkDerivation { pname = "csg"; - version = "0.1.0.2"; - sha256 = "19lqlc8li2cx2kc2y3p4n6s2jz94h490zqnm0fywj7vgp4f11rcm"; + version = "0.1.0.3"; + sha256 = "17ysbi3585ag7a098lv7wjr4xsjm8mm3zz5hfvz2ahis2g151ipx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -56169,17 +56531,17 @@ self: { }) {}; "damnpacket" = callPackage - ({ mkDerivation, attoparsec, base, bytestring, fail, hspec - , html-entities, HUnit, QuickCheck, template-haskell, text - , th-lift-instances + ({ mkDerivation, attoparsec, base, base-compat-batteries + , bytestring, fail, hspec, html-entity, HUnit, QuickCheck + , semigroups, template-haskell, text, th-lift-instances }: mkDerivation { pname = "damnpacket"; - version = "1.1.0"; - sha256 = "07xxlfl4n336k9r8jm12bdx4j8hx02wbq0l2gxlwam6dqpclwa38"; + version = "1.3.0"; + sha256 = "06lkdmbsxqws33ndv7rljpcgqh5iqx33fb227652nh60zw19j0y2"; libraryHaskellDepends = [ - attoparsec base bytestring fail html-entities template-haskell text - th-lift-instances + attoparsec base base-compat-batteries bytestring fail html-entity + semigroups template-haskell text th-lift-instances ]; testHaskellDepends = [ base bytestring hspec HUnit QuickCheck ]; description = "Parsing dAmn messages"; @@ -57168,14 +57530,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "data-diverse_4_5_0_0" = callPackage + "data-diverse_4_6_0_0" = callPackage ({ mkDerivation, base, containers, criterion, deepseq, ghc-prim , hspec, tagged }: mkDerivation { pname = "data-diverse"; - version = "4.5.0.0"; - sha256 = "1wcyv9nh1zaixyaw4527nslmhian6g6z16y69s345wd6zmx8idmr"; + version = "4.6.0.0"; + sha256 = "1m6bxi37c7qkn96296lxfc0x3ab33w7yyjkvf3avla94dd248k89"; libraryHaskellDepends = [ base containers deepseq ghc-prim tagged ]; @@ -57204,14 +57566,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "data-diverse-lens_4_2_0_1" = callPackage + "data-diverse-lens_4_3_0_0" = callPackage ({ mkDerivation, base, data-diverse, data-has, hspec, lens , profunctors, tagged }: mkDerivation { pname = "data-diverse-lens"; - version = "4.2.0.1"; - sha256 = "07nwbvjhwx3qyh2ksk027qgci91nsckgd4yskkbafndpiri1fxds"; + version = "4.3.0.0"; + sha256 = "11nrisgx7yb7qp03s3hxkbygc170fggbi3mcid196dhakxv4kl4p"; libraryHaskellDepends = [ base data-diverse data-has lens profunctors tagged ]; @@ -59559,6 +59921,7 @@ self: { libraryHaskellDepends = [ base template-haskell unicode-show ]; description = "You do not have to write variable names twice in Debug.Trace"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "debug-tracy" = callPackage @@ -60023,14 +60386,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "dejafu_1_10_1_0" = callPackage + "dejafu_1_11_0_1" = callPackage ({ mkDerivation, base, concurrency, containers, contravariant , deepseq, exceptions, leancheck, profunctors, random, transformers }: mkDerivation { pname = "dejafu"; - version = "1.10.1.0"; - sha256 = "17ib90sy40ynlpjagq7f2r2kw040qjgrhwnbncyicaravips3vva"; + version = "1.11.0.1"; + sha256 = "04a4nnipb7qlw0kz4gy7flzndas3zppjxjbp8vvpcc7n5mqcj89x"; libraryHaskellDepends = [ base concurrency containers contravariant deepseq exceptions leancheck profunctors random transformers @@ -60590,6 +60953,30 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "deriving-compat_0_5" = callPackage + ({ mkDerivation, base, base-compat, base-orphans, containers + , ghc-boot-th, ghc-prim, hspec, hspec-discover, QuickCheck, tagged + , template-haskell, th-abstraction, transformers + , transformers-compat + }: + mkDerivation { + pname = "deriving-compat"; + version = "0.5"; + sha256 = "1777569bgb7p1xn9ch90jbg2mk4gph04mzmw3r8c6kq84db1484m"; + libraryHaskellDepends = [ + base containers ghc-boot-th ghc-prim template-haskell + th-abstraction transformers transformers-compat + ]; + testHaskellDepends = [ + base base-compat base-orphans hspec QuickCheck tagged + template-haskell transformers transformers-compat + ]; + testToolDepends = [ hspec-discover ]; + description = "Backports of GHC deriving extensions"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "derp" = callPackage ({ mkDerivation, base, containers }: mkDerivation { @@ -60778,6 +61165,7 @@ self: { ]; description = "JSON and CSV encoding for quantities"; license = stdenv.lib.licenses.mpl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "detrospector" = callPackage @@ -60872,8 +61260,8 @@ self: { }: mkDerivation { pname = "dfinity-radix-tree"; - version = "0.0.0"; - sha256 = "1ksxg3qf7g5hnsrcl3bfcdq81v05xk787g4ry4qj3vlkwss5pcnc"; + version = "0.1.0"; + sha256 = "14q9ick40mz5a0bdz1s7ga4fhw27hkidrsf543nmgm14q5w8q2nf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -60884,9 +61272,10 @@ self: { ]; executableHaskellDepends = [ aeson base base16-bytestring bytestring cmdargs cryptohash-sha256 - data-default-class resourcet text unordered-containers + data-default-class leveldb-haskell resourcet text + unordered-containers ]; - description = "A Merkleized key–value data store"; + description = "A generic data integrity layer"; license = stdenv.lib.licenses.gpl3; }) {}; @@ -62236,6 +62625,7 @@ self: { ]; description = "Speed up form designing using digestive functors and bootstrap"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "digestive-foundation-lucid" = callPackage @@ -63170,6 +63560,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "disposable_1_0_0_0" = callPackage + ({ mkDerivation, base, ghcjs-base-stub, stm }: + mkDerivation { + pname = "disposable"; + version = "1.0.0.0"; + sha256 = "0kzyzbhhjm005fi2n59j4in58kps4rciaza9pzi0qd2xnn9j5iqv"; + libraryHaskellDepends = [ base ghcjs-base-stub stm ]; + description = "Allows storing different resource-releasing actions together"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "dist-upload" = callPackage ({ mkDerivation, base, Cabal, directory, filepath, process }: mkDerivation { @@ -63861,6 +64263,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "distributive_0_6" = callPackage + ({ mkDerivation, base, base-orphans, Cabal, cabal-doctest, doctest + , generic-deriving, hspec, hspec-discover, tagged, transformers + }: + mkDerivation { + pname = "distributive"; + version = "0.6"; + sha256 = "1m61ppv851nifid98fimvpml0z0j3ximj7nxd72hshrslr0i7bx4"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ base base-orphans tagged transformers ]; + testHaskellDepends = [ base doctest generic-deriving hspec ]; + testToolDepends = [ hspec-discover ]; + description = "Distributive functors -- Dual to Traversable"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "diversity" = callPackage ({ mkDerivation, base, containers, data-ordlist, fasta , math-functions, MonadRandom, optparse-applicative, parsec, pipes @@ -64628,22 +65047,6 @@ self: { ({ mkDerivation, base, doctest }: mkDerivation { pname = "doctest-driver-gen"; - version = "0.2.0.2"; - sha256 = "0yil9va8l4q1wp6zz6w699103ym54fw03vsigzj12iql6y06cxxl"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base doctest ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest ]; - description = "Generate driver file for doctest's cabal integration"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "doctest-driver-gen_0_2_0_3" = callPackage - ({ mkDerivation, base, doctest }: - mkDerivation { - pname = "doctest-driver-gen"; version = "0.2.0.3"; sha256 = "1vm9rwym2fdl76kwgkh21z2ixfcvza1df4gba2hm7hkk0n4ndcq6"; isLibrary = true; @@ -66297,6 +66700,8 @@ self: { pname = "dynamic-plot"; version = "0.3.0.0"; sha256 = "0a674aqs9jnkga3a9sp24qyr3fssbizh4p1zwfvzwafnjrbmrc5c"; + revision = "1"; + editedCabalFile = "0f0n6pkgvhgvqh33dlzid3mb35r87w9kirdilky6zk8bcr2li4da"; libraryHaskellDepends = [ base colour colour-space constrained-categories containers data-default deepseq diagrams-cairo diagrams-core diagrams-gtk @@ -67384,6 +67789,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "either_5_0_1" = callPackage + ({ mkDerivation, base, bifunctors, mtl, profunctors, QuickCheck + , semigroupoids, semigroups, test-framework + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "either"; + version = "5.0.1"; + sha256 = "064hjfld7dkzs78sy30k5qkiva3hx24rax6dvzz5ygr2c0zypdkc"; + libraryHaskellDepends = [ + base bifunctors mtl profunctors semigroupoids semigroups + ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Combinators for working with sums"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "either-both" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -68322,6 +68747,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "email-validate_2_3_2_6" = callPackage + ({ mkDerivation, attoparsec, base, bytestring, doctest, hspec + , QuickCheck, template-haskell + }: + mkDerivation { + pname = "email-validate"; + version = "2.3.2.6"; + sha256 = "0chgylvc8xmhp933rdbmpg5sv4y7yg2h6kbf0ip1dzmbd5p55pa5"; + libraryHaskellDepends = [ + attoparsec base bytestring template-haskell + ]; + testHaskellDepends = [ base bytestring doctest hspec QuickCheck ]; + description = "Email address validation"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "email-validate-json" = callPackage ({ mkDerivation, aeson, base, email-validate, text }: mkDerivation { @@ -69618,6 +70060,33 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ersatz_0_4_3" = callPackage + ({ mkDerivation, array, attoparsec, base, bytestring, Cabal + , cabal-doctest, containers, data-default, directory, doctest + , filepath, lens, mtl, parsec, process, semigroups, temporary + , transformers, unordered-containers + }: + mkDerivation { + pname = "ersatz"; + version = "0.4.3"; + sha256 = "0c0yrh342682k47phy5xwc0gya4h9d07j53dakkwhnx0r4p6gjfn"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + array attoparsec base bytestring containers data-default lens mtl + process semigroups temporary transformers unordered-containers + ]; + executableHaskellDepends = [ + array base containers lens mtl parsec semigroups + ]; + testHaskellDepends = [ array base directory doctest filepath mtl ]; + description = "A monad for expressing SAT or QSAT problems using observable sharing"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ersatz-toysat" = callPackage ({ mkDerivation, array, base, containers, ersatz, toysolver , transformers @@ -70958,6 +71427,8 @@ self: { pname = "exceptions"; version = "0.10.0"; sha256 = "1ms9zansv0pwzwdjncvx4kf18lnkjy2p61hvjhvxmjx5bqp93p8y"; + revision = "1"; + editedCabalFile = "1ydvmhi9bj7b1md3wd4l2z2lccgyjgv3ha8milmy2l4lad9xh6xy"; libraryHaskellDepends = [ base mtl stm template-haskell transformers transformers-compat ]; @@ -71689,6 +72160,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "extensible_0_4_10" = callPackage + ({ mkDerivation, aeson, base, bytestring, cassava, comonad + , constraints, deepseq, exceptions, ghc-prim, hashable, lens + , monad-skeleton, mtl, prettyprinter, primitive, profunctors + , QuickCheck, resourcet, semigroups, StateVar, tagged + , template-haskell, text, th-lift, transformers + , unordered-containers, vector + }: + mkDerivation { + pname = "extensible"; + version = "0.4.10"; + sha256 = "012xryq2jz7k6dmrzjh8j3yn9ggyna63vppi6xwdqjxks9xms2zq"; + libraryHaskellDepends = [ + aeson base bytestring cassava comonad constraints deepseq + exceptions ghc-prim hashable monad-skeleton mtl prettyprinter + primitive profunctors QuickCheck resourcet semigroups StateVar + tagged template-haskell text th-lift transformers + unordered-containers vector + ]; + testHaskellDepends = [ base lens QuickCheck template-haskell ]; + description = "Extensible, efficient, optics-friendly data types and effects"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "extensible-data" = callPackage ({ mkDerivation, base, data-lens, hashable, template-haskell , unordered-containers @@ -71752,23 +72248,23 @@ self: { }) {}; "extensible-effects-concurrent" = callPackage - ({ mkDerivation, base, containers, directory, extensible-effects - , filepath, HUnit, lens, logging-effect, monad-control, mtl - , parallel, process, QuickCheck, random, stm, tagged, tasty - , tasty-discover, tasty-hunit, time, transformers + ({ mkDerivation, base, containers, deepseq, directory + , extensible-effects, filepath, HUnit, lens, logging-effect + , monad-control, mtl, parallel, process, QuickCheck, random, stm + , tagged, tasty, tasty-discover, tasty-hunit, time, transformers }: mkDerivation { pname = "extensible-effects-concurrent"; - version = "0.3.0.2"; - sha256 = "1w44dyyi3qgqsmbvnid67cn8mqy85si75wpryhl76b456pgp0ynl"; + version = "0.4.0.0"; + sha256 = "0asqibn8hf4i627k9ms8sak90wmyis919ggb41lra4rlv03r61rc"; libraryHaskellDepends = [ - base containers directory extensible-effects filepath lens + base containers deepseq directory extensible-effects filepath lens logging-effect monad-control mtl parallel process QuickCheck random stm tagged time transformers ]; testHaskellDepends = [ - base containers extensible-effects HUnit lens QuickCheck stm tasty - tasty-discover tasty-hunit + base containers deepseq extensible-effects HUnit lens QuickCheck + stm tasty tasty-discover tasty-hunit ]; description = "Message passing concurrency as extensible-effect"; license = stdenv.lib.licenses.bsd3; @@ -72537,6 +73033,7 @@ self: { testHaskellDepends = [ base hspec text ]; description = "A highly experimental Fastly API client"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "fastparser" = callPackage @@ -73502,6 +73999,7 @@ self: { ]; description = "Remote multi-db SQLCipher server"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "fez-conf" = callPackage @@ -73538,8 +74036,8 @@ self: { }: mkDerivation { pname = "fficxx"; - version = "0.4"; - sha256 = "0c3893jfxxihkjz9m7m25rfa8x4yfim70p8z4jsbdw6j5adgvh8b"; + version = "0.4.1"; + sha256 = "1s1yzvs1j4as4875509hzny1399zimpzyh9zh5g0ddg8dqg5lfi4"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base bytestring Cabal containers data-default directory either @@ -75220,21 +75718,6 @@ self: { }: mkDerivation { pname = "flexible-defaults"; - version = "0.0.1.2"; - sha256 = "1hkdnylmv1inmxgw2rx5wvy06z5spbxq82rs7xkpv4syrz734w42"; - libraryHaskellDepends = [ - base containers template-haskell th-extras transformers - ]; - description = "Generate default function implementations for complex type classes"; - license = stdenv.lib.licenses.publicDomain; - }) {}; - - "flexible-defaults_0_0_2" = callPackage - ({ mkDerivation, base, containers, template-haskell, th-extras - , transformers - }: - mkDerivation { - pname = "flexible-defaults"; version = "0.0.2"; sha256 = "0r4aq6n5h9xnal535hds111vq8whzsvyc3yibmcbp7fndldd9mgk"; libraryHaskellDepends = [ @@ -75242,7 +75725,6 @@ self: { ]; description = "Generate default function implementations for complex type classes"; license = stdenv.lib.licenses.publicDomain; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "flexible-time" = callPackage @@ -75360,6 +75842,7 @@ self: { ]; description = "Parsing of pilot tracklogs dumped as KML"; license = stdenv.lib.licenses.mpl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "flip-cmd" = callPackage @@ -76081,20 +76564,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "foldl_1_4_1" = callPackage + "foldl_1_4_2" = callPackage ({ mkDerivation, base, bytestring, comonad, containers , contravariant, criterion, hashable, mwc-random, primitive - , profunctors, semigroups, text, transformers, unordered-containers - , vector, vector-builder + , profunctors, semigroupoids, semigroups, text, transformers + , unordered-containers, vector, vector-builder }: mkDerivation { pname = "foldl"; - version = "1.4.1"; - sha256 = "0xfwqhn4nzl1fi1v1h7i9haxjy32118lf08rgfiqpw33zzrkyz6d"; + version = "1.4.2"; + sha256 = "14ccc2spv63v7vipfrmk8jbbw2x1dkkxsyzqzcpnkzjw0yg4ghc9"; libraryHaskellDepends = [ base bytestring comonad containers contravariant hashable - mwc-random primitive profunctors semigroups text transformers - unordered-containers vector vector-builder + mwc-random primitive profunctors semigroupoids semigroups text + transformers unordered-containers vector vector-builder ]; benchmarkHaskellDepends = [ base criterion ]; description = "Composable, streaming, and efficient left folds"; @@ -76690,6 +77173,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "formatting_6_3_5" = callPackage + ({ mkDerivation, array, base, bytestring, clock, ghc-prim, hspec + , integer-gmp, old-locale, scientific, semigroups, text, time + , transformers + }: + mkDerivation { + pname = "formatting"; + version = "6.3.5"; + sha256 = "190dlahm0rr5122i09dm81wdawcacskj0mjmniz9ghzqq79wg2iy"; + libraryHaskellDepends = [ + array base bytestring clock ghc-prim integer-gmp old-locale + scientific semigroups text time transformers + ]; + testHaskellDepends = [ base hspec semigroups ]; + description = "Combinator-based type-safe formatting (like printf() or FORMAT)"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "forml" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, cereal , containers, directory, file-embed, ghc-prim, GraphSCC, hslogger @@ -77240,6 +77742,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "free_5_1" = callPackage + ({ mkDerivation, base, comonad, containers, distributive + , exceptions, mtl, profunctors, semigroupoids, template-haskell + , transformers, transformers-base + }: + mkDerivation { + pname = "free"; + version = "5.1"; + sha256 = "117axvibwyz429ixdws6mm3sk5vm0jygdxf45456m8yyh9f4shkh"; + libraryHaskellDepends = [ + base comonad containers distributive exceptions mtl profunctors + semigroupoids template-haskell transformers transformers-base + ]; + description = "Monads for free"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "free-concurrent" = callPackage ({ mkDerivation, base, type-aligned }: mkDerivation { @@ -77869,6 +78389,7 @@ self: { testHaskellDepends = [ base bytestring pandoc process text ]; description = "Simple library for transformation of HTML to other formats"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "frontmatter" = callPackage @@ -78490,6 +79011,7 @@ self: { ]; description = "Basic call-by-value lambda-calculus with operational semantics based on Funcons"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "funcons-tools" = callPackage @@ -78719,8 +79241,8 @@ self: { }: mkDerivation { pname = "funflow"; - version = "1.0.1"; - sha256 = "114fi0z54cl93ympb1vir1fc55q8ijbg09ax4v8k05nmb916p2s0"; + version = "1.1.0"; + sha256 = "1fly82yffcdldjvqkk920rj7aq4ncy71g5zix1cnn1hks6n8xp8b"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -79251,25 +79773,6 @@ self: { "gauge" = callPackage ({ mkDerivation, base, basement, bytestring, deepseq, directory - , HUnit, process, tasty, tasty-hunit, vector - }: - mkDerivation { - pname = "gauge"; - version = "0.2.1"; - sha256 = "0401b5jzfib4wxwicqynhkn79q98hnxrpiqk1b353a6wix55hy1d"; - libraryHaskellDepends = [ - base basement deepseq directory process vector - ]; - testHaskellDepends = [ - base bytestring deepseq directory HUnit tasty tasty-hunit - ]; - benchmarkHaskellDepends = [ base ]; - description = "small framework for performance measurement and analysis"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "gauge_0_2_2" = callPackage - ({ mkDerivation, base, basement, bytestring, deepseq, directory , foundation, process, vector }: mkDerivation { @@ -79285,7 +79788,6 @@ self: { benchmarkHaskellDepends = [ base ]; description = "small framework for performance measurement and analysis"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "gbu" = callPackage @@ -80000,31 +80502,14 @@ self: { "generic-deriving" = callPackage ({ mkDerivation, base, containers, ghc-prim, hspec, hspec-discover - , template-haskell - }: - mkDerivation { - pname = "generic-deriving"; - version = "1.12.1"; - sha256 = "0wwl29f5mlxmrigh0kp35q7aj10ymknnjabmdrdfxpi079rkzzgm"; - revision = "1"; - editedCabalFile = "1vr9lyvcrdiar6ndqnspwvhvrbnc1fvsjyx458ivpcr6j75j0l5j"; - libraryHaskellDepends = [ - base containers ghc-prim template-haskell - ]; - testHaskellDepends = [ base hspec template-haskell ]; - testToolDepends = [ hspec-discover ]; - description = "Generic programming library for generalised deriving"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "generic-deriving_1_12_2" = callPackage - ({ mkDerivation, base, containers, ghc-prim, hspec, hspec-discover , template-haskell, th-abstraction }: mkDerivation { pname = "generic-deriving"; version = "1.12.2"; sha256 = "1i7d6cpj9yhaqb79zays3nqchhaacacjz9bkc0zlwj73y5gvi22n"; + revision = "1"; + editedCabalFile = "0gr20ypr6s0183wmrhmia0zvpbn4dmfyr3wksrkrqj4i8nhj42fz"; libraryHaskellDepends = [ base containers ghc-prim template-haskell th-abstraction ]; @@ -80032,7 +80517,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Generic programming library for generalised deriving"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "generic-enum" = callPackage @@ -80584,12 +81068,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "genvalidity_0_5_0_3" = callPackage + "genvalidity_0_5_1_0" = callPackage ({ mkDerivation, base, hspec, QuickCheck, validity }: mkDerivation { pname = "genvalidity"; - version = "0.5.0.3"; - sha256 = "0xf1sd5g87gvdg1n3g7in7x8x4cf1jnsbaxmq64qmjlns4qr0fnk"; + version = "0.5.1.0"; + sha256 = "17ykq38j9a2lzir6dqz5jgy6ndaafrpkhqhcg96c5ppg7wcxaaj0"; libraryHaskellDepends = [ base QuickCheck validity ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "Testing utilities for the validity library"; @@ -80620,7 +81104,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-aeson_0_2_0_1" = callPackage + "genvalidity-aeson_0_2_0_2" = callPackage ({ mkDerivation, aeson, base, genvalidity, genvalidity-hspec , genvalidity-scientific, genvalidity-text , genvalidity-unordered-containers, genvalidity-vector, hspec @@ -80628,8 +81112,8 @@ self: { }: mkDerivation { pname = "genvalidity-aeson"; - version = "0.2.0.1"; - sha256 = "0cfp5smj5ap5ppsk95yf0qmpbysqypsiccbcdckqkiky73nnvax8"; + version = "0.2.0.2"; + sha256 = "1c77lbw4y6fmrsdzxwm38la161n6k3zvjwisg17ssz0a1bm4y96i"; libraryHaskellDepends = [ aeson base genvalidity genvalidity-scientific genvalidity-text genvalidity-unordered-containers genvalidity-vector QuickCheck @@ -80662,14 +81146,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-bytestring_0_2_0_1" = callPackage + "genvalidity-bytestring_0_2_0_2" = callPackage ({ mkDerivation, base, bytestring, genvalidity, genvalidity-hspec , hspec, QuickCheck, validity, validity-bytestring }: mkDerivation { pname = "genvalidity-bytestring"; - version = "0.2.0.1"; - sha256 = "0lyxaisy2wjsqh0igx74wkjginnza3mmjasi8gdvkzk8kd85jvcl"; + version = "0.2.0.2"; + sha256 = "1qy19j0cyza2a6z59br4wma68081xqsq9m4ndmv195ym04a0bfa3"; libraryHaskellDepends = [ base bytestring genvalidity QuickCheck validity validity-bytestring ]; @@ -80700,14 +81184,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-containers_0_4_0_1" = callPackage + "genvalidity-containers_0_5_0_0" = callPackage ({ mkDerivation, base, containers, genvalidity, genvalidity-hspec , hspec, QuickCheck, validity, validity-containers }: mkDerivation { pname = "genvalidity-containers"; - version = "0.4.0.1"; - sha256 = "1b8q17s22wimh4dgm2igaw6icdc2bqfr7ih28ba6chmnhsjiw9wf"; + version = "0.5.0.0"; + sha256 = "1qjqwsmdcwww4fwd3m40cckwq3xgmm37kc6s25z75w768grr51br"; libraryHaskellDepends = [ base containers genvalidity QuickCheck validity validity-containers ]; @@ -80739,14 +81223,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-hspec_0_6_0_3" = callPackage + "genvalidity-hspec_0_6_1_0" = callPackage ({ mkDerivation, base, doctest, genvalidity, genvalidity-property , hspec, hspec-core, QuickCheck, validity }: mkDerivation { pname = "genvalidity-hspec"; - version = "0.6.0.3"; - sha256 = "195r2yw1ivss2w7criarmw5bpwjfpa19myvxfpkwk769wz9vih63"; + version = "0.6.1.0"; + sha256 = "1m8vlbjnpn5g3gx59z7zspk1bjq6fy56g7i1wxxb1lgmgibydm1m"; libraryHaskellDepends = [ base genvalidity genvalidity-property hspec hspec-core QuickCheck validity @@ -80781,15 +81265,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-hspec-aeson_0_2_0_1" = callPackage + "genvalidity-hspec-aeson_0_3_0_0" = callPackage ({ mkDerivation, aeson, base, bytestring, deepseq, doctest , genvalidity, genvalidity-aeson, genvalidity-hspec , genvalidity-text, hspec, QuickCheck, text }: mkDerivation { pname = "genvalidity-hspec-aeson"; - version = "0.2.0.1"; - sha256 = "0q681wj05vpxrplklvdxcr8l67gm71hvs7b991m7rfslpkx24smh"; + version = "0.3.0.0"; + sha256 = "0bqjfl86gj2201w5yingzizwq8hn63zdhir9wp3p0jiah2zp5rxh"; libraryHaskellDepends = [ aeson base bytestring deepseq genvalidity genvalidity-hspec hspec QuickCheck @@ -80820,14 +81304,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-hspec-binary_0_2_0_1" = callPackage + "genvalidity-hspec-binary_0_2_0_2" = callPackage ({ mkDerivation, base, binary, deepseq, doctest, genvalidity , genvalidity-hspec, hspec, QuickCheck }: mkDerivation { pname = "genvalidity-hspec-binary"; - version = "0.2.0.1"; - sha256 = "1ch48h0z7njxkv8ig8hk3d2s5a1w0ssxy2br05qn43snbdh33vx0"; + version = "0.2.0.2"; + sha256 = "1h14b0m5kq3md5rys07rrn5jjcpk0c09fln40v221z2rrssnh211"; libraryHaskellDepends = [ base binary deepseq genvalidity genvalidity-hspec hspec QuickCheck ]; @@ -80854,14 +81338,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-hspec-cereal_0_2_0_1" = callPackage + "genvalidity-hspec-cereal_0_2_0_2" = callPackage ({ mkDerivation, base, cereal, deepseq, doctest, genvalidity , genvalidity-hspec, hspec, QuickCheck }: mkDerivation { pname = "genvalidity-hspec-cereal"; - version = "0.2.0.1"; - sha256 = "18md81dfwgf6cq6aq4yz0qm0j5myfq8md9zpbb87yrdmrqsvyapn"; + version = "0.2.0.2"; + sha256 = "16r4g9k9rjifvbmy5nwkan6lnwhjvp85nlfihr1in5lwxf3gcl71"; libraryHaskellDepends = [ base cereal deepseq genvalidity genvalidity-hspec hspec QuickCheck ]; @@ -80893,15 +81377,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-hspec-hashable_0_2_0_1" = callPackage + "genvalidity-hspec-hashable_0_2_0_2" = callPackage ({ mkDerivation, base, doctest, genvalidity, genvalidity-hspec , genvalidity-property, hashable, hspec, hspec-core, QuickCheck , validity }: mkDerivation { pname = "genvalidity-hspec-hashable"; - version = "0.2.0.1"; - sha256 = "1llgq9181n24cjd7blan1fc2lgv9039nfwl3sj95z2z9wvy63cgm"; + version = "0.2.0.2"; + sha256 = "0s4z5k4myx4c6sky11l7s2lsvkxgyri11ikq75nfinff8b44h7iw"; libraryHaskellDepends = [ base genvalidity genvalidity-hspec genvalidity-property hashable hspec QuickCheck validity @@ -80954,14 +81438,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-path_0_3_0_1" = callPackage + "genvalidity-path_0_3_0_2" = callPackage ({ mkDerivation, base, criterion, genvalidity, genvalidity-hspec , hspec, path, QuickCheck, validity-path }: mkDerivation { pname = "genvalidity-path"; - version = "0.3.0.1"; - sha256 = "13avz2nlksvp6yam0mjny4fcj77i40vp8an5585n1mzrikadhr8x"; + version = "0.3.0.2"; + sha256 = "1fj0lc1il2yjlj6wmczvnk505c1dlvz4xw2aml0agkal9lpnvz00"; libraryHaskellDepends = [ base genvalidity path QuickCheck validity-path ]; @@ -80990,14 +81474,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "genvalidity-property_0_2_0_2" = callPackage + "genvalidity-property_0_2_1_0" = callPackage ({ mkDerivation, base, directory, doctest, filepath, genvalidity , hspec, QuickCheck, validity }: mkDerivation { pname = "genvalidity-property"; - version = "0.2.0.2"; - sha256 = "1rsxi6d5a4bz2dcxcrsa3xpav2nkxss8hindyncfqgn2af0vk5rp"; + version = "0.2.1.0"; + sha256 = "0xwq2wnrxlxcllina9faxxs8svslpxr73z9cw8asgc4b3hf41drm"; libraryHaskellDepends = [ base genvalidity hspec QuickCheck validity ]; @@ -81064,14 +81548,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-text_0_5_0_1" = callPackage + "genvalidity-text_0_5_0_2" = callPackage ({ mkDerivation, array, base, genvalidity, genvalidity-hspec, hspec , QuickCheck, text, validity, validity-text }: mkDerivation { pname = "genvalidity-text"; - version = "0.5.0.1"; - sha256 = "05dgf67zm9gbk985mz89jm4vdwd1s9rnazmjzwxn9gqkd6niqxyw"; + version = "0.5.0.2"; + sha256 = "1d955278y5522a5aji1i662iynkjn7g88af9myvg6q5b4nig5cqx"; libraryHaskellDepends = [ array base genvalidity QuickCheck text validity validity-text ]; @@ -81100,14 +81584,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-time_0_2_0_2" = callPackage + "genvalidity-time_0_2_1_0" = callPackage ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec , QuickCheck, time, validity-time }: mkDerivation { pname = "genvalidity-time"; - version = "0.2.0.2"; - sha256 = "0b0cyssqirpafla3dxkg6klq0nv6xnbaj10szb714lwiyvcx8dj1"; + version = "0.2.1.0"; + sha256 = "1r28jg9awlx1hzcfdhi0a9a6xlr0f33imqgqyxz4pm9zs4faag7s"; libraryHaskellDepends = [ base genvalidity QuickCheck time validity-time ]; @@ -81178,14 +81662,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-uuid_0_1_0_1" = callPackage + "genvalidity-uuid_0_1_0_2" = callPackage ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec , QuickCheck, uuid, validity, validity-uuid }: mkDerivation { pname = "genvalidity-uuid"; - version = "0.1.0.1"; - sha256 = "1ssihh980iz9kx2apygbw0r5qdb40hnvjkpsn2qw55r8d5hc4sa6"; + version = "0.1.0.2"; + sha256 = "04pladdynmjdcd553cp44nli7k5hxp82rlpyihi1ynm7q3glndfi"; libraryHaskellDepends = [ base genvalidity QuickCheck uuid validity validity-uuid ]; @@ -81216,14 +81700,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "genvalidity-vector_0_2_0_1" = callPackage + "genvalidity-vector_0_2_0_2" = callPackage ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec , QuickCheck, validity, validity-vector, vector }: mkDerivation { pname = "genvalidity-vector"; - version = "0.2.0.1"; - sha256 = "1xinffnzcaws7i6k0l3x89g6kzkg1vhiwkngh5ag69wvpzq3if7n"; + version = "0.2.0.2"; + sha256 = "0f1ycxpvi6jmwakfs26ydzwd8gw8qzlybr2v1ppyvvjn6a7rilhi"; libraryHaskellDepends = [ base genvalidity QuickCheck validity validity-vector vector ]; @@ -82829,6 +83313,8 @@ self: { pname = "ghcjs-base-stub"; version = "0.2.0.0"; sha256 = "05k59a6jg1a5s8zvqfah5rvm5kg34sqpv2zx4chczihx3n9prfv7"; + revision = "1"; + editedCabalFile = "0hvmgwyhv28d39was8bm52anwqh6x4mbd1mzzqxazlm0d0l8bpwp"; libraryHaskellDepends = [ aeson attoparsec base containers deepseq ghc-prim primitive scientific text transformers unordered-containers vector @@ -82842,8 +83328,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "ghcjs-codemirror"; - version = "0.0.0.1"; - sha256 = "04x5h0i4fgyc2c5ihrnk0w3l1f3avvcl115zlnich93nillgbnfw"; + version = "0.0.0.2"; + sha256 = "15r09fdx6q3l8jk8k0hziw9hzvdj7p9jssj8nx78fjkdkxj2rfvc"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base ]; description = "Installs CodeMirror JavaScript files"; @@ -83850,6 +84336,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {webkitgtk-web-extension = null;}; + "gi-wnck" = callPackage + ({ mkDerivation, base, bytestring, Cabal, containers, gi-atk + , gi-gdk, gi-gdkpixbuf, gi-gobject, gi-gtk, haskell-gi + , haskell-gi-base, haskell-gi-overloading, libwnck, text + , transformers + }: + mkDerivation { + pname = "gi-wnck"; + version = "3.0.1"; + sha256 = "06l1gqnznpa7rgimk1l49i3yfzdaawb26vqz3baswrksmi9mhrhh"; + setupHaskellDepends = [ base Cabal haskell-gi ]; + libraryHaskellDepends = [ + base bytestring containers gi-atk gi-gdk gi-gdkpixbuf gi-gobject + gi-gtk haskell-gi haskell-gi-base haskell-gi-overloading text + transformers + ]; + libraryPkgconfigDepends = [ libwnck ]; + doHaddock = false; + description = "Wnck bindings"; + license = stdenv.lib.licenses.lgpl21; + }) {inherit (pkgs.gnome2) libwnck;}; + "gi-xlib" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, haskell-gi , haskell-gi-base, haskell-gi-overloading, text, transformers, x11 @@ -84505,6 +85013,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "githash" = callPackage + ({ mkDerivation, base, bytestring, directory, filepath, hspec + , process, template-haskell, temporary + }: + mkDerivation { + pname = "githash"; + version = "0.1.0.0"; + sha256 = "183f1kbyvcikvm2damm7radhimhlhgnblcvw5j2s794x2h4akcci"; + libraryHaskellDepends = [ + base bytestring directory filepath process template-haskell + ]; + testHaskellDepends = [ + base bytestring directory filepath hspec process template-haskell + temporary + ]; + description = "Compile git revision info into Haskell projects"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "github" = callPackage ({ mkDerivation, aeson, aeson-compat, base, base-compat , base16-bytestring, binary, binary-orphans, byteable, bytestring @@ -84863,6 +85390,7 @@ self: { testHaskellDepends = [ base hspec rio ]; description = "Gitlab Web API"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "gitlib" = callPackage @@ -85313,6 +85841,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "glazier_1_0_0_0" = callPackage + ({ mkDerivation, alternators, base, data-diverse, data-diverse-lens + , dlist, lens, mtl, stm, tagged, transformers, unliftio + , unliftio-core + }: + mkDerivation { + pname = "glazier"; + version = "1.0.0.0"; + sha256 = "193igffdh2sdb8sharv7ycxj0daxii2x2n0c53kbz6cbwi865ig9"; + libraryHaskellDepends = [ + alternators base data-diverse data-diverse-lens dlist lens mtl + transformers unliftio unliftio-core + ]; + testHaskellDepends = [ + alternators base data-diverse data-diverse-lens dlist lens mtl stm + tagged transformers unliftio unliftio-core + ]; + description = "Extensible effects using ContT, State and variants"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "glazier-pipes" = callPackage ({ mkDerivation, base, glazier, mmorph, pipes, stm, stm-extras , transformers @@ -85329,22 +85879,21 @@ self: { }) {}; "glazier-react" = callPackage - ({ mkDerivation, base, containers, deepseq, disposable, dlist, free - , ghcjs-base-stub, glazier, javascript-extras, lens, mmorph, mtl - , pipes-concurrency, profunctors, semigroupoids, stm, text - , transformers, unordered-containers + ({ mkDerivation, alternators, base, containers, data-diverse + , data-diverse-lens, deepseq, dlist, ghcjs-base-stub, glazier + , javascript-extras, lens, lens-misc, mtl, newtype-generics, stm + , tagged, transformers, unliftio, unliftio-core }: mkDerivation { pname = "glazier-react"; - version = "0.6.0.0"; - sha256 = "06myq4g4g4n61l601848irqjribrlq3f4wa9cqkzl19wbfsxbdsp"; + version = "1.0.0.0"; + sha256 = "07srw64bmjhyhc8vvp4qc21smi7h7dmxkcj0ks650clbvh6g5887"; libraryHaskellDepends = [ - base containers deepseq disposable dlist free ghcjs-base-stub - glazier javascript-extras lens mmorph mtl pipes-concurrency - profunctors semigroupoids stm text transformers - unordered-containers + alternators base containers data-diverse data-diverse-lens deepseq + dlist ghcjs-base-stub glazier javascript-extras lens lens-misc mtl + newtype-generics stm tagged transformers unliftio unliftio-core ]; - description = "ReactJS binding using Glazier and Pipes.Fluid"; + description = "ReactJS binding using Glazier.Command."; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -85359,6 +85908,8 @@ self: { pname = "glazier-react-examples"; version = "0.6.0.0"; sha256 = "1a1abb24kfnfqvgrxs8hfpxgfyhiqwc13pgdpsq6rk0c1ys9vhzm"; + revision = "1"; + editedCabalFile = "141zbnixssldmfq12sh0i8i2mwr1kv9m5n2l63p50qlmzrqx4nqx"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -85373,18 +85924,19 @@ self: { }) {}; "glazier-react-widget" = callPackage - ({ mkDerivation, base, containers, disposable, dlist, free - , ghcjs-base-stub, glazier, glazier-react, javascript-extras, lens - , mmorph, mtl, pipes-concurrency, stm, transformers + ({ mkDerivation, base, containers, data-diverse, data-diverse-lens + , deepseq, Diff, dlist, ghcjs-base-stub, glazier, glazier-react + , javascript-extras, lens, lens-misc, monadlist, mtl, tagged + , transformers }: mkDerivation { pname = "glazier-react-widget"; - version = "0.6.0.0"; - sha256 = "1b7ywbyv2maqk8fdxx7g847gh5i25rsxyjy458ysy9gydswngrla"; + version = "1.0.0.0"; + sha256 = "1ac7ybkdi4zafdrhs7sv0db3x5lfalj3ny13rlix8r12bf24mxs0"; libraryHaskellDepends = [ - base containers disposable dlist free ghcjs-base-stub glazier - glazier-react javascript-extras lens mmorph mtl pipes-concurrency - stm transformers + base containers data-diverse data-diverse-lens deepseq Diff dlist + ghcjs-base-stub glazier glazier-react javascript-extras lens + lens-misc monadlist mtl tagged transformers ]; description = "Generic widget library using glazier-react"; license = stdenv.lib.licenses.bsd3; @@ -86064,12 +86616,12 @@ self: { }) {}; "gmpint" = callPackage - ({ mkDerivation, base, gmp }: + ({ mkDerivation, base, gmp, micro-recursion-schemes }: mkDerivation { pname = "gmpint"; - version = "0.1.0.14"; - sha256 = "08a3ksaq1xx8w153v0xd5k7g2b65wgkr1jshj7533pkg59s8zdxs"; - libraryHaskellDepends = [ base ]; + version = "0.1.1.1"; + sha256 = "02zr0acsf7zpyl369c9063qp6dgpblcb73q2m9fwz63ya58ixbk4"; + libraryHaskellDepends = [ base micro-recursion-schemes ]; librarySystemDepends = [ gmp ]; description = "GMP integer conversions"; license = stdenv.lib.licenses.bsd3; @@ -88640,6 +89192,7 @@ self: { testHaskellDepends = [ base smallcheck tasty tasty-smallcheck ]; description = "Class of graphs"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "graph-core" = callPackage @@ -89109,6 +89662,8 @@ self: { pname = "graphs"; version = "0.7.1"; sha256 = "02g21jpz8jm8j1kpszk8vglw1733z2jp32dc650z40nxlmxpmlxc"; + revision = "1"; + editedCabalFile = "1cjyxswlkachki6l4mcaffwpjajyx86jzipzlqjg7c080vwvb19g"; libraryHaskellDepends = [ array base containers transformers transformers-compat void ]; @@ -89238,6 +89793,7 @@ self: { testHaskellDepends = [ base QuickCheck ]; description = "Gray code encoder/decoder"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "gray-extended" = callPackage @@ -92540,8 +93096,8 @@ self: { }: mkDerivation { pname = "hadolint"; - version = "1.8.0"; - sha256 = "1nkms3iqp24xs3v04q3vvc8m8iviq8l38jbw4jksaxbqpwin08bm"; + version = "1.9.0"; + sha256 = "1wsk7h1rd3r7rqmnchj56i3cgac6gf3kchhrpdp22s81lhnw5jkz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -93430,6 +93986,7 @@ self: { ]; description = "Symmetry operations generater of Hall Symbols"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "halma" = callPackage @@ -94463,23 +95020,6 @@ self: { }: mkDerivation { pname = "happstack-jmacro"; - version = "7.0.12"; - sha256 = "1bmffidqi784y1qwgqxncwcw6knklnkliznbdx66gjvkfccv9d5s"; - libraryHaskellDepends = [ - base base64-bytestring bytestring cereal digest happstack-server - jmacro text utf8-string wl-pprint-text - ]; - description = "Support for using JMacro with Happstack"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "happstack-jmacro_7_0_12_1" = callPackage - ({ mkDerivation, base, base64-bytestring, bytestring, cereal - , digest, happstack-server, jmacro, text, utf8-string - , wl-pprint-text - }: - mkDerivation { - pname = "happstack-jmacro"; version = "7.0.12.1"; sha256 = "0bx2wa0pdj73f11xhkk0qq3k8zwh6ccc3kqli9q59617s05wq6zz"; libraryHaskellDepends = [ @@ -94488,7 +95028,6 @@ self: { ]; description = "Support for using JMacro with Happstack"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "happstack-lite" = callPackage @@ -94548,34 +95087,6 @@ self: { }: mkDerivation { pname = "happstack-server"; - version = "7.5.1"; - sha256 = "18cfkwffwfz410x9wjbciynbqs9srpzg60rappzx778lb33px1rj"; - libraryHaskellDepends = [ - base base64-bytestring blaze-html bytestring containers directory - exceptions extensible-exceptions filepath hslogger html - monad-control mtl network network-uri old-locale parsec process - semigroups sendfile syb system-filepath template-haskell text - threads time time-compat transformers transformers-base - transformers-compat unix utf8-string xhtml zlib - ]; - testHaskellDepends = [ - base bytestring containers HUnit parsec zlib - ]; - description = "Web related tools and services"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "happstack-server_7_5_1_1" = callPackage - ({ mkDerivation, base, base64-bytestring, blaze-html, bytestring - , containers, directory, exceptions, extensible-exceptions - , filepath, hslogger, html, HUnit, monad-control, mtl, network - , network-uri, old-locale, parsec, process, semigroups, sendfile - , syb, system-filepath, template-haskell, text, threads, time - , time-compat, transformers, transformers-base, transformers-compat - , unix, utf8-string, xhtml, zlib - }: - mkDerivation { - pname = "happstack-server"; version = "7.5.1.1"; sha256 = "0qgx142xbig19j5j31b4vcgznzaw9c6fg4009vzp9yhvfbfnajk1"; libraryHaskellDepends = [ @@ -94591,7 +95102,6 @@ self: { ]; description = "Web related tools and services"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "happstack-server-tls" = callPackage @@ -96029,8 +96539,8 @@ self: { }: mkDerivation { pname = "haskell-dap"; - version = "0.0.5.0"; - sha256 = "1sb6jqq1nfzaycr1cx4an5yaaad3k8ijig7ss0xa6wvjkyc37xqa"; + version = "0.0.6.0"; + sha256 = "1w14vz2fgj90lx6w7w93zk9blmafpyv32gxzz7pm5fwnbrr07ds2"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base ]; @@ -96668,6 +97178,7 @@ self: { ]; description = "Manage nix overrides for haskell packages"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "haskell-packages" = callPackage @@ -97114,14 +97625,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "haskell-tools-ast_1_1_0_0" = callPackage + "haskell-tools-ast_1_1_0_1" = callPackage ({ mkDerivation, base, classyplate, ghc, mtl, pretty, references , template-haskell, uniplate }: mkDerivation { pname = "haskell-tools-ast"; - version = "1.1.0.0"; - sha256 = "1s5iify3n8bixhrv5gllxbmihddym5vwa46dph36lvv44xxs7gfh"; + version = "1.1.0.1"; + sha256 = "1g450ikg2wi7whw46ibm9pc7jdnk5lng8l7lqryi0nigmrmgz355"; libraryHaskellDepends = [ base classyplate ghc mtl pretty references template-haskell uniplate @@ -97199,15 +97710,15 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "haskell-tools-backend-ghc_1_1_0_0" = callPackage + "haskell-tools-backend-ghc_1_1_0_1" = callPackage ({ mkDerivation, base, bytestring, containers, ghc, ghc-boot-th , haskell-tools-ast, mtl, references, safe, split, template-haskell , transformers, uniplate }: mkDerivation { pname = "haskell-tools-backend-ghc"; - version = "1.1.0.0"; - sha256 = "08a2h70sbzga9c202q0f7j1nqyvqjpx8npfzrkdid45fp04v3aks"; + version = "1.1.0.1"; + sha256 = "030ylilmgn4drp00d3683kwfyq9rky5i8ihpvmqjkphyq7bbwva4"; libraryHaskellDepends = [ base bytestring containers ghc ghc-boot-th haskell-tools-ast mtl references safe split template-haskell transformers uniplate @@ -97228,8 +97739,8 @@ self: { }: mkDerivation { pname = "haskell-tools-builtin-refactorings"; - version = "1.1.0.0"; - sha256 = "0v448flr5n6ppm4zd4cfd467rxan28vpjavw7yk8gj16ff9xv974"; + version = "1.1.0.1"; + sha256 = "0xlcwyydspn73nv7yi1djncqhswszqn9skrm6hm96scfyqvvxbwa"; libraryHaskellDepends = [ aeson base Cabal classyplate containers deepseq directory filepath ghc ghc-paths haskell-tools-ast haskell-tools-backend-ghc @@ -97258,8 +97769,8 @@ self: { }: mkDerivation { pname = "haskell-tools-cli"; - version = "1.1.0.0"; - sha256 = "1yi85v7h9zsnj90kpx681qxyzxdi54s0ah3k95jrwlhiddmf69hx"; + version = "1.1.0.1"; + sha256 = "1gc20ajz1xzp3343j013w0knqdvhwa5hxwvxr6ydpxgrigjxk18p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -97295,8 +97806,8 @@ self: { }: mkDerivation { pname = "haskell-tools-daemon"; - version = "1.1.0.0"; - sha256 = "07m1zprhqvs7gr9vlhms9gypcp8w0f8a0d1xkx3wp0bbl942zcf6"; + version = "1.1.0.1"; + sha256 = "0vq8d7n8k978d2jv4f3sbvccjj9vqydci33xl1axamslani0k8x2"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -97328,8 +97839,8 @@ self: { }: mkDerivation { pname = "haskell-tools-debug"; - version = "1.1.0.0"; - sha256 = "1cr352nw160gwfnhibc9vfnx1sgryjbq2psiz257ci55zpk4zihb"; + version = "1.1.0.1"; + sha256 = "1l84y0pqwcq1y6509gg68flfa1ai5zl2psn57lp1nm17i7cddsjw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -97354,8 +97865,8 @@ self: { }: mkDerivation { pname = "haskell-tools-demo"; - version = "1.1.0.0"; - sha256 = "1sjb6imfx9zraxdcwzn4a0a0alswlxazzqzfzsicyqp8778ifc0l"; + version = "1.1.0.1"; + sha256 = "1rzpwy7fvc51vs9sqpxvja84bqjgrpj6943cc2p06d1ynl7vzmk5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -97385,8 +97896,8 @@ self: { }: mkDerivation { pname = "haskell-tools-experimental-refactorings"; - version = "1.1.0.0"; - sha256 = "0pw13pr7lwlmbi6lqkxfbhlcvjmphsyy7qxkv6hmvwqfdkv805lr"; + version = "1.1.0.1"; + sha256 = "16qdvs68zlzjx5gj8034w5qwc79i640kfdnwc81wi84hch7xwy4p"; libraryHaskellDepends = [ base Cabal containers directory filepath ghc ghc-paths haskell-tools-ast haskell-tools-backend-ghc @@ -97422,14 +97933,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "haskell-tools-prettyprint_1_1_0_0" = callPackage + "haskell-tools-prettyprint_1_1_0_1" = callPackage ({ mkDerivation, base, containers, ghc, haskell-tools-ast, mtl , references, split, text, uniplate }: mkDerivation { pname = "haskell-tools-prettyprint"; - version = "1.1.0.0"; - sha256 = "12py365fg7rmprxpy4qj6q3znq8ah0bzi2gy3lx8s1s8kzq0wyv0"; + version = "1.1.0.1"; + sha256 = "1x8zz8i66cfnvif991bj9nkidp2bwlhs9zfkxwlyhvhrlda45q8f"; libraryHaskellDepends = [ base containers ghc haskell-tools-ast mtl references split text uniplate @@ -97469,7 +97980,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-refactor_1_1_0_0" = callPackage + "haskell-tools-refactor_1_1_0_1" = callPackage ({ mkDerivation, aeson, base, Cabal, containers, directory, either , filepath, ghc, ghc-paths, haskell-tools-ast , haskell-tools-backend-ghc, haskell-tools-prettyprint @@ -97479,8 +97990,8 @@ self: { }: mkDerivation { pname = "haskell-tools-refactor"; - version = "1.1.0.0"; - sha256 = "1r3wh3jg8dmmx8fi7qpzl85gnxypmhp90h451dpb3ykcwfav775s"; + version = "1.1.0.1"; + sha256 = "0kfw41f4js9s6mf533q7vm7ym63hb289j77r2ypm08490bqjhi9g"; libraryHaskellDepends = [ aeson base Cabal containers directory filepath ghc ghc-paths haskell-tools-ast haskell-tools-backend-ghc @@ -97520,15 +98031,15 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "haskell-tools-rewrite_1_1_0_0" = callPackage + "haskell-tools-rewrite_1_1_0_1" = callPackage ({ mkDerivation, base, containers, directory, filepath, ghc , haskell-tools-ast, haskell-tools-prettyprint, mtl, references , tasty, tasty-hunit }: mkDerivation { pname = "haskell-tools-rewrite"; - version = "1.1.0.0"; - sha256 = "1000vm2ihfj8phajnqifhj6q4ghy5jq2xvn7s7l1hh2brd37zah8"; + version = "1.1.0.1"; + sha256 = "0j1925x0qkkm8n0klqbawgd419ra9jrfl4y4hn75j3w4zxzh3v5j"; libraryHaskellDepends = [ base containers ghc haskell-tools-ast haskell-tools-prettyprint mtl references @@ -100006,8 +100517,8 @@ self: { }: mkDerivation { pname = "hbf"; - version = "0.1.0.2"; - sha256 = "07r3m42y3g3ikg0mabqcd309jq2280kg0rn74n2ybmr1vs815fpj"; + version = "0.2.0.0"; + sha256 = "1w0q30vxfw8pz9sjnkiw40sq5m9xdigvnw9ppixzj1kd4d9b29z9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -100030,6 +100541,7 @@ self: { ]; description = "An optimizing Brainfuck compiler and evaluator"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hblas" = callPackage @@ -102671,8 +103183,8 @@ self: { }: mkDerivation { pname = "hformat"; - version = "0.3.2.0"; - sha256 = "1761gw0g7ar4ls4pzm8vq3k48nckd4lliq7f9s7br961215sjgx9"; + version = "0.3.3.0"; + sha256 = "0g9kjfssaksjj3cp0qiwk7v85yy3sb2ryhjnlrdznhm3mnkvp35j"; libraryHaskellDepends = [ ansi-terminal base base-unicode-symbols text ]; @@ -102929,8 +103441,8 @@ self: { }: mkDerivation { pname = "hgis"; - version = "1.0.0.0"; - sha256 = "1j70p3bgy8v1nzpqiv20lpxq7vxi54f9j3mwl8046hanra99wdr5"; + version = "1.0.0.1"; + sha256 = "0plx7k1lba4rdx1c7bnvhaqgnrjzh1br5h69msq4wkn4c9f54lha"; libraryHaskellDepends = [ ansi-wl-pprint base binary bytestring Chart Chart-cairo Chart-diagrams colour composition-prelude data-binary-ieee754 @@ -104687,51 +105199,54 @@ self: { }) {}; "hledger" = callPackage - ({ mkDerivation, ansi-terminal, base, base-compat, bytestring - , cmdargs, containers, criterion, csv, data-default, Decimal, Diff - , directory, file-embed, filepath, hashable, haskeline, here - , hledger-lib, html, HUnit, lucid, megaparsec, mtl, mtl-compat - , old-time, parsec, pretty-show, process, regex-tdfa, safe - , shakespeare, split, tabular, temporary, terminfo, test-framework - , test-framework-hunit, text, time, timeit, transformers - , unordered-containers, utf8-string, utility-ht, wizards + ({ mkDerivation, ansi-terminal, base, base-compat-batteries + , bytestring, cmdargs, containers, criterion, csv, data-default + , Decimal, Diff, directory, file-embed, filepath, hashable + , haskeline, here, hledger-lib, html, HUnit, lucid, megaparsec, mtl + , mtl-compat, old-time, parsec, pretty-show, process, regex-tdfa + , safe, shakespeare, split, tabular, temporary, terminfo + , test-framework, test-framework-hunit, text, time, timeit + , transformers, unordered-containers, utf8-string, utility-ht + , wizards }: mkDerivation { pname = "hledger"; - version = "1.9.1"; - sha256 = "13arzk1l2hxmi8baa68kvl2sha0na34h0dl6isbfpvgnp7w1c0b3"; - revision = "1"; - editedCabalFile = "0qmvkw2zbcpjmkf71janpdpdha45yi29f9kv54rxqbckkh1ziych"; + version = "1.10"; + sha256 = "1ly4sp0lhb3w5nrd77xd84bcyvm000fwwjipm7gq8bjhabw20i7n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - ansi-terminal base base-compat bytestring cmdargs containers csv - data-default Decimal Diff directory file-embed filepath hashable - haskeline here hledger-lib HUnit lucid megaparsec mtl mtl-compat - old-time pretty-show process regex-tdfa safe shakespeare split - tabular temporary terminfo text time transformers + ansi-terminal base base-compat-batteries bytestring cmdargs + containers csv data-default Decimal Diff directory file-embed + filepath hashable haskeline here hledger-lib HUnit lucid megaparsec + mtl mtl-compat old-time parsec pretty-show process regex-tdfa safe + shakespeare split tabular temporary terminfo text time transformers unordered-containers utf8-string utility-ht wizards ]; executableHaskellDepends = [ - ansi-terminal base base-compat bytestring cmdargs containers csv - data-default Decimal directory file-embed filepath haskeline here - hledger-lib HUnit mtl mtl-compat old-time parsec pretty-show - process regex-tdfa safe shakespeare split tabular temporary - terminfo text time unordered-containers utf8-string utility-ht - wizards + ansi-terminal base base-compat-batteries bytestring cmdargs + containers csv data-default Decimal directory file-embed filepath + haskeline here hledger-lib HUnit megaparsec mtl mtl-compat old-time + parsec pretty-show process regex-tdfa safe shakespeare split + tabular temporary terminfo text time transformers + unordered-containers utf8-string utility-ht wizards ]; testHaskellDepends = [ - ansi-terminal base base-compat bytestring cmdargs containers csv - data-default Decimal directory file-embed filepath haskeline here - hledger-lib HUnit mtl mtl-compat old-time parsec pretty-show - process regex-tdfa safe shakespeare split tabular temporary - terminfo test-framework test-framework-hunit text time - unordered-containers utf8-string utility-ht wizards + ansi-terminal base base-compat-batteries bytestring cmdargs + containers csv data-default Decimal directory file-embed filepath + haskeline here hledger-lib HUnit megaparsec mtl mtl-compat old-time + parsec pretty-show process regex-tdfa safe shakespeare split + tabular temporary terminfo test-framework test-framework-hunit text + time transformers unordered-containers utf8-string utility-ht + wizards ]; benchmarkHaskellDepends = [ - ansi-terminal base base-compat criterion directory file-embed - filepath here hledger-lib html pretty-show process shakespeare - tabular temporary terminfo time timeit utility-ht + ansi-terminal base base-compat-batteries bytestring cmdargs + containers criterion csv data-default Decimal directory file-embed + filepath haskeline here hledger-lib html HUnit megaparsec mtl + mtl-compat old-time parsec pretty-show process regex-tdfa safe + shakespeare split tabular temporary terminfo text time timeit + transformers unordered-containers utf8-string utility-ht wizards ]; description = "Command-line interface for the hledger accounting tool"; license = stdenv.lib.licenses.gpl3; @@ -104746,8 +105261,8 @@ self: { }: mkDerivation { pname = "hledger-api"; - version = "1.9.1"; - sha256 = "1krg8pxqcndrs6z196lb7z5nanyp9vxk5ziqpapj0f11ifxcijj8"; + version = "1.10"; + sha256 = "1axcpipq6m4r9bh2633j7l88pc4ax8ycb2q0wivhfq2dp1pbylbf"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -104758,6 +105273,7 @@ self: { ]; description = "Web API server for the hledger accounting tool"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hledger-chart" = callPackage @@ -104848,8 +105364,8 @@ self: { }: mkDerivation { pname = "hledger-irr"; - version = "0.1.1.14"; - sha256 = "06y1y6qgq9arhqwdna1kfafhjwin8qmlczl5rxazms3g45dl72rr"; + version = "0.1.1.15"; + sha256 = "06fbahn3pp73an5xxn0qnh8h7hkjvvl5z4z52vgcpxh13frd65hx"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -104861,59 +105377,56 @@ self: { }) {}; "hledger-lib" = callPackage - ({ mkDerivation, ansi-terminal, array, base, base-compat + ({ mkDerivation, ansi-terminal, array, base, base-compat-batteries , blaze-markup, bytestring, cmdargs, containers, csv, data-default , Decimal, deepseq, directory, doctest, easytest, extra, filepath , Glob, hashtables, HUnit, megaparsec, mtl, mtl-compat, old-time - , parsec, pretty-show, regex-tdfa, safe, split, tabular - , test-framework, test-framework-hunit, text, time, transformers - , uglymemo, utf8-string + , parsec, parser-combinators, pretty-show, regex-tdfa, safe, split + , tabular, test-framework, test-framework-hunit, text, time + , transformers, uglymemo, utf8-string }: mkDerivation { pname = "hledger-lib"; - version = "1.9.1"; - sha256 = "0yxgx4bpqn8vchrfp07d1fqmsscj8w5g63nqd2n49r29d6i5q5az"; - revision = "1"; - editedCabalFile = "1j7yhnjkiw2vm63d6va18kknjxkywb2j0h525ys4z3y6840i8b8k"; + version = "1.10"; + sha256 = "1kj3376gaaq39rwfyhfg7npdsy7z561184wia4rc8ijzf0isz2p1"; libraryHaskellDepends = [ - ansi-terminal array base base-compat blaze-markup bytestring - cmdargs containers csv data-default Decimal deepseq directory extra - filepath hashtables HUnit megaparsec mtl mtl-compat old-time parsec - pretty-show regex-tdfa safe split tabular text time transformers - uglymemo utf8-string + ansi-terminal array base base-compat-batteries blaze-markup + bytestring cmdargs containers csv data-default Decimal deepseq + directory extra filepath hashtables HUnit megaparsec mtl mtl-compat + old-time parsec parser-combinators pretty-show regex-tdfa safe + split tabular text time transformers uglymemo utf8-string ]; testHaskellDepends = [ - ansi-terminal array base base-compat blaze-markup bytestring - cmdargs containers csv data-default Decimal deepseq directory - doctest easytest extra filepath Glob hashtables HUnit megaparsec - mtl mtl-compat old-time parsec pretty-show regex-tdfa safe split - tabular test-framework test-framework-hunit text time transformers - uglymemo utf8-string + ansi-terminal array base base-compat-batteries blaze-markup + bytestring cmdargs containers csv data-default Decimal deepseq + directory doctest easytest extra filepath Glob hashtables HUnit + megaparsec mtl mtl-compat old-time parsec parser-combinators + pretty-show regex-tdfa safe split tabular test-framework + test-framework-hunit text time transformers uglymemo utf8-string ]; description = "Core data types, parsers and functionality for the hledger accounting tools"; license = stdenv.lib.licenses.gpl3; }) {}; "hledger-ui" = callPackage - ({ mkDerivation, ansi-terminal, async, base, base-compat, brick - , cmdargs, containers, data-default, directory, filepath, fsnotify - , hledger, hledger-lib, HUnit, megaparsec, microlens + ({ mkDerivation, ansi-terminal, async, base, base-compat-batteries + , brick, cmdargs, containers, data-default, directory, filepath + , fsnotify, hledger, hledger-lib, HUnit, megaparsec, microlens , microlens-platform, pretty-show, process, safe, split, text , text-zipper, time, transformers, vector, vty }: mkDerivation { pname = "hledger-ui"; - version = "1.9.1"; - sha256 = "18ar9lja583rg06q9dbnrpify6hj99444fjw2z54lr54587151v0"; - revision = "1"; - editedCabalFile = "0dy5vrm969cqp4mz31524z8w1m3lznrr17kgn204rgq91j7zzwx2"; + version = "1.10.1"; + sha256 = "1h4hhsyajpiydvs1p6f4z1s3kblyfn4lvnwwbar6lj4z5jfizm67"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - ansi-terminal async base base-compat brick cmdargs containers - data-default directory filepath fsnotify hledger hledger-lib HUnit - megaparsec microlens microlens-platform pretty-show process safe - split text text-zipper time transformers vector vty + ansi-terminal async base base-compat-batteries brick cmdargs + containers data-default directory filepath fsnotify hledger + hledger-lib HUnit megaparsec microlens microlens-platform + pretty-show process safe split text text-zipper time transformers + vector vty ]; description = "Curses-style user interface for the hledger accounting tool"; license = stdenv.lib.licenses.gpl3; @@ -104939,46 +105452,29 @@ self: { }) {}; "hledger-web" = callPackage - ({ mkDerivation, base, base-compat, blaze-html, blaze-markup - , bytestring, clientsession, cmdargs, conduit-extra, data-default - , directory, filepath, hjsmin, hledger, hledger-lib, hspec - , http-client, http-conduit, HUnit, json, megaparsec, mtl, parsec - , safe, shakespeare, template-haskell, text, time, transformers - , wai, wai-extra, wai-handler-launch, warp, yaml, yesod, yesod-core - , yesod-form, yesod-static, yesod-test + ({ mkDerivation, base, blaze-html, blaze-markup, bytestring + , case-insensitive, clientsession, cmdargs, conduit, conduit-extra + , data-default, directory, filepath, hjsmin, hledger, hledger-lib + , http-client, http-conduit, HUnit, json, megaparsec, mtl + , semigroups, shakespeare, template-haskell, text, time + , transformers, wai, wai-extra, wai-handler-launch, warp, yaml + , yesod, yesod-core, yesod-form, yesod-static }: mkDerivation { pname = "hledger-web"; - version = "1.9.2"; - sha256 = "0b533vs5vrk4wpwgf23l7rvijq4qpi6w5nql2hsjwl3xk2ihfpv3"; - revision = "1"; - editedCabalFile = "1njgbfl71iif3f7z3kkyqgab98md93a56mpl6laq0kw4azgdsajy"; + version = "1.10"; + sha256 = "1hfl9kr3h9lcmy512s3yiv3rp31md7kw5n1145khj2j3l8qd3py9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base base-compat blaze-html blaze-markup bytestring clientsession - cmdargs conduit-extra data-default directory filepath hjsmin - hledger hledger-lib http-client http-conduit HUnit json megaparsec - mtl parsec safe shakespeare template-haskell text time transformers - wai wai-extra wai-handler-launch warp yaml yesod yesod-core - yesod-form yesod-static - ]; - executableHaskellDepends = [ - base base-compat blaze-html blaze-markup bytestring clientsession - cmdargs conduit-extra data-default directory filepath hjsmin - hledger hledger-lib http-client http-conduit HUnit json megaparsec - mtl parsec safe shakespeare template-haskell text time transformers - wai wai-extra wai-handler-launch warp yaml yesod yesod-core - yesod-form yesod-static - ]; - testHaskellDepends = [ - base base-compat blaze-html blaze-markup bytestring clientsession - cmdargs conduit-extra data-default directory filepath hjsmin - hledger hledger-lib hspec http-client http-conduit HUnit json - megaparsec mtl parsec safe shakespeare template-haskell text time - transformers wai wai-extra wai-handler-launch warp yaml yesod - yesod-core yesod-form yesod-static yesod-test + base blaze-html blaze-markup bytestring case-insensitive + clientsession cmdargs conduit conduit-extra data-default directory + filepath hjsmin hledger hledger-lib http-client http-conduit HUnit + json megaparsec mtl semigroups shakespeare template-haskell text + time transformers wai wai-extra wai-handler-launch warp yaml yesod + yesod-core yesod-form yesod-static ]; + executableHaskellDepends = [ base ]; description = "Web interface for the hledger accounting tool"; license = stdenv.lib.licenses.gpl3; maintainers = with stdenv.lib.maintainers; [ peti ]; @@ -105080,8 +105576,8 @@ self: { }: mkDerivation { pname = "hlint"; - version = "2.1.6"; - sha256 = "1sxdbb9zqhydx304v2as4y3r1yaqbgy9vcbygsaz3dy6rkifn23v"; + version = "2.1.7"; + sha256 = "1k693vmk4c7536534v2fd1l5km07xq53py6xnifv110h71g326zf"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -108515,12 +109011,12 @@ self: { license = "GPL"; }) {}; - "hs-bibutils_6_5_0_0" = callPackage + "hs-bibutils_6_6_0_0" = callPackage ({ mkDerivation, base, syb }: mkDerivation { pname = "hs-bibutils"; - version = "6.5.0.0"; - sha256 = "10myn4dg9d7ia40cgnsm3biyzd59w3kkaa4w0f6wc1wchmvmr37q"; + version = "6.6.0.0"; + sha256 = "0n2sz2zl4naspryd49ii858qkjp2lapns5a2gr8zm6vvn5sh1f0l"; libraryHaskellDepends = [ base syb ]; description = "Haskell bindings to bibutils, the bibliography conversion utilities"; license = "GPL"; @@ -110076,28 +110572,30 @@ self: { , attoparsec, base, bytestring, Cabal, containers, cpphs , data-default, deepseq, direct-sqlite, directory, exceptions , filepath, fsnotify, ghc, ghc-boot, ghc-paths, ghc-syb-utils - , haddock-api, haskell-names, haskell-src-exts, hdocs, hformat - , hlint, hspec, HTTP, lens, lifted-base, mmorph, monad-control - , monad-loops, mtl, network, optparse-applicative, process - , regex-pcre-builtin, scientific, simple-log, sqlite-simple, stm - , syb, template-haskell, text, text-region, time, transformers - , transformers-base, uniplate, unix, unordered-containers, vector + , haddock-api, haddock-library, haskell-names, haskell-src-exts + , hdocs, hformat, hlint, hspec, HTTP, lens, lifted-base, mmorph + , monad-control, monad-loops, mtl, network, optparse-applicative + , process, regex-pcre-builtin, scientific, simple-log + , sqlite-simple, stm, syb, template-haskell, text, text-region + , time, transformers, transformers-base, traverse-with-class + , uniplate, unix, unordered-containers, vector }: mkDerivation { pname = "hsdev"; - version = "0.3.1.3"; - sha256 = "1xrggdkaq3b1vsnkrcsm2ji6wcrmxv53lf8x3ki7py9blgjj3vrj"; + version = "0.3.1.4"; + sha256 = "12mz6ahfs693yxi02765v4215dbs2pzqp17w49z38zz3y6kcwmb9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-pretty array async attoparsec base bytestring Cabal containers cpphs data-default deepseq direct-sqlite directory exceptions filepath fsnotify ghc ghc-boot ghc-paths ghc-syb-utils - haddock-api haskell-names haskell-src-exts hdocs hformat hlint HTTP - lens lifted-base mmorph monad-control monad-loops mtl network - optparse-applicative process regex-pcre-builtin scientific - simple-log sqlite-simple stm syb template-haskell text text-region - time transformers transformers-base uniplate unix + haddock-api haddock-library haskell-names haskell-src-exts hdocs + hformat hlint HTTP lens lifted-base mmorph monad-control + monad-loops mtl network optparse-applicative process + regex-pcre-builtin scientific simple-log sqlite-simple stm syb + template-haskell text text-region time transformers + transformers-base traverse-with-class uniplate unix unordered-containers vector ]; executableHaskellDepends = [ @@ -111054,15 +111552,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hspec_2_5_3" = callPackage + "hspec_2_5_4" = callPackage ({ mkDerivation, base, call-stack, directory, hspec-core , hspec-discover, hspec-expectations, hspec-meta, HUnit, QuickCheck , stringbuilder, transformers }: mkDerivation { pname = "hspec"; - version = "2.5.3"; - sha256 = "1rpiaw5m18zdsap7m7ih01awgmnaanq6rshhx9krway1v1y635ab"; + version = "2.5.4"; + sha256 = "19shs06srgq4j3mm0lz09yxqn7hzq4pnyl32wmi9nf2a7s3xwlm8"; libraryHaskellDepends = [ base call-stack hspec-core hspec-discover hspec-expectations HUnit QuickCheck transformers @@ -111160,7 +111658,7 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hspec-core_2_5_3" = callPackage + "hspec-core_2_5_4" = callPackage ({ mkDerivation, ansi-terminal, array, base, call-stack, clock , deepseq, directory, filepath, hspec-expectations, hspec-meta , HUnit, process, QuickCheck, quickcheck-io, random, setenv @@ -111168,8 +111666,8 @@ self: { }: mkDerivation { pname = "hspec-core"; - version = "2.5.3"; - sha256 = "0gm9ydc89xhv56v6zqpmphl6pr4cik98rny3jy4x5vdwixv1yyyi"; + version = "2.5.4"; + sha256 = "1r9h59nqdl3bx4ka1f7fwp9b6724vs1260aa0a9xn18xkabkm72q"; libraryHaskellDepends = [ ansi-terminal array base call-stack clock deepseq directory filepath hspec-expectations HUnit QuickCheck quickcheck-io random @@ -111223,13 +111721,13 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hspec-discover_2_5_3" = callPackage + "hspec-discover_2_5_4" = callPackage ({ mkDerivation, base, directory, filepath, hspec-meta, QuickCheck }: mkDerivation { pname = "hspec-discover"; - version = "2.5.3"; - sha256 = "0ja4360cphbhiaqfjsgm9qzzckvf0yc4f3c6wkr4iydx1km7v0r0"; + version = "2.5.4"; + sha256 = "1wzf6gf7qfq0n045gq4rpr5vs5g6rnwd3i6c4fmaza0k7pxd9znl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -112809,26 +113307,6 @@ self: { }) {}; "html-conduit" = callPackage - ({ mkDerivation, base, bytestring, conduit, containers, hspec - , HUnit, resourcet, tagstream-conduit, text, transformers - , xml-conduit, xml-types - }: - mkDerivation { - pname = "html-conduit"; - version = "1.3.0"; - sha256 = "15pf15w55g39h2fwl4wlq1f0jbfknajb6qyk1l7xv6q7fphhkgvq"; - libraryHaskellDepends = [ - base bytestring conduit containers resourcet tagstream-conduit text - transformers xml-conduit xml-types - ]; - testHaskellDepends = [ - base bytestring containers hspec HUnit xml-conduit - ]; - description = "Parse HTML documents using xml-conduit datatypes"; - license = stdenv.lib.licenses.mit; - }) {}; - - "html-conduit_1_3_1" = callPackage ({ mkDerivation, attoparsec, base, bytestring, conduit , conduit-extra, containers, deepseq, hspec, HUnit, resourcet, text , transformers, xml-conduit, xml-types @@ -112846,7 +113324,6 @@ self: { ]; description = "Parse HTML documents using xml-conduit datatypes"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "html-email-validate" = callPackage @@ -112882,6 +113359,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "html-entity" = callPackage + ({ mkDerivation, attoparsec, base, base-compat, Cabal + , cabal-doctest, doctest, text, unordered-containers + }: + mkDerivation { + pname = "html-entity"; + version = "0.1.1.0"; + sha256 = "0phqz59acf3qjgfpqj8nymgnziz3j66kza6zinbjkzz4qnhbdh0j"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + attoparsec base base-compat text unordered-containers + ]; + testHaskellDepends = [ base doctest ]; + description = "HTML entity decoding and encoding for Text"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "html-entity-map" = callPackage ({ mkDerivation, base, criterion, text, unordered-containers }: mkDerivation { @@ -113274,6 +113772,8 @@ self: { pname = "http-client"; version = "0.5.13"; sha256 = "12q0w3avdkddrp7cgvwkmmfxdi4cz1ajic8jlrgp2plhn8ggnag2"; + revision = "1"; + editedCabalFile = "1ivwpyz9j7p1qp6sc256nb3p7bdprz92kfjgxynn0m6fldbbbvpp"; libraryHaskellDepends = [ array base blaze-builder bytestring case-insensitive containers cookie deepseq exceptions filepath ghc-prim http-types memory @@ -113290,6 +113790,34 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "http-client_0_5_13_1" = callPackage + ({ mkDerivation, array, async, base, blaze-builder, bytestring + , case-insensitive, containers, cookie, deepseq, directory + , exceptions, filepath, ghc-prim, hspec, http-types, memory + , mime-types, monad-control, network, network-uri, random, stm + , streaming-commons, text, time, transformers, zlib + }: + mkDerivation { + pname = "http-client"; + version = "0.5.13.1"; + sha256 = "0szwbgvkkdz56lgi91armkagmb7nnfwbpp4j7cm9zhmffv3ba8g1"; + libraryHaskellDepends = [ + array base blaze-builder bytestring case-insensitive containers + cookie deepseq exceptions filepath ghc-prim http-types memory + mime-types network network-uri random stm streaming-commons text + time transformers + ]; + testHaskellDepends = [ + async base blaze-builder bytestring case-insensitive containers + deepseq directory hspec http-types monad-control network + network-uri streaming-commons text time transformers zlib + ]; + doCheck = false; + description = "An HTTP client engine"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "http-client-auth" = callPackage ({ mkDerivation, base, base64-string, blaze-builder, bytestring , case-insensitive, conduit, crypto-conduit, http-client @@ -113550,6 +114078,37 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "http-conduit_2_3_2" = callPackage + ({ mkDerivation, aeson, base, blaze-builder, bytestring + , case-insensitive, conduit, conduit-extra, connection, cookie + , data-default-class, hspec, http-client, http-client-tls + , http-types, HUnit, mtl, network, resourcet, streaming-commons + , temporary, text, time, transformers, unliftio, unliftio-core + , utf8-string, wai, wai-conduit, warp, warp-tls + }: + mkDerivation { + pname = "http-conduit"; + version = "2.3.2"; + sha256 = "1iay4hr0mj8brkxvgkv1liqa8irl9axfc3qhn8qsvcyq4n1l95km"; + revision = "1"; + editedCabalFile = "0g6rg8r33q5rmrx5287vjfcqwjacchgzyfc8aqqrhrfz3fq5ll0g"; + libraryHaskellDepends = [ + aeson base bytestring conduit conduit-extra http-client + http-client-tls http-types mtl resourcet transformers unliftio-core + ]; + testHaskellDepends = [ + aeson base blaze-builder bytestring case-insensitive conduit + conduit-extra connection cookie data-default-class hspec + http-client http-types HUnit network resourcet streaming-commons + temporary text time transformers unliftio utf8-string wai + wai-conduit warp warp-tls + ]; + doCheck = false; + description = "HTTP client package with conduit interface and HTTPS support"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "http-conduit-browser" = callPackage ({ mkDerivation, base, base64-bytestring, blaze-builder, bytestring , case-insensitive, conduit, containers, cookie, data-default @@ -114196,6 +114755,7 @@ self: { testHaskellDepends = [ base ]; description = "Implement gRPC-over-HTTP2 clients"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "httpd-shed" = callPackage @@ -114556,12 +115116,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hunit-dejafu_1_2_0_5" = callPackage + "hunit-dejafu_1_2_0_6" = callPackage ({ mkDerivation, base, dejafu, exceptions, HUnit }: mkDerivation { pname = "hunit-dejafu"; - version = "1.2.0.5"; - sha256 = "17k7sg2ifvmikzjlzhawc65afq32lva5p79szva6xplghh689xv6"; + version = "1.2.0.6"; + sha256 = "10zndwkgpliyycyynfd34nhzplfhs9cychpznzzcwbpckx3w5ajl"; libraryHaskellDepends = [ base dejafu exceptions HUnit ]; description = "Deja Fu support for the HUnit test framework"; license = stdenv.lib.licenses.mit; @@ -116668,8 +117228,8 @@ self: { pname = "hyphenation"; version = "0.7.1"; sha256 = "1h5i07v2zlka29dj4zysc47p747j88x6z4zm3zwcr5i8yirm0p52"; - revision = "3"; - editedCabalFile = "0pphkzschnqs2xj6kdg52gg2fjsg51lv0djxin8pqqjrdnyq4igy"; + revision = "4"; + editedCabalFile = "0pp7qm40alsfd9z5dvp6l2c7dp9zp0skl9g0iib3jahxs3n8qcrr"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ @@ -118371,8 +118931,8 @@ self: { ({ mkDerivation, base, lens }: mkDerivation { pname = "impossible"; - version = "1.1.2"; - sha256 = "13iwy9pn3w3whg8hqy83mgbzcb156pz88nfcx4axkw9hpkh4810s"; + version = "1.1.3"; + sha256 = "01p9s6nzzlmgg1gr42ys6wkxnzp1jqs3ay8jz5lbm1nkbjlabs4n"; libraryHaskellDepends = [ base lens ]; description = "Set of data and type definitions of impossible types. Impossible types are useful when declaring type classes / type families instances that should not be expanded by GHC until a specific type is provided in order to keep the types nice and readable."; license = stdenv.lib.licenses.asl20; @@ -118530,6 +119090,7 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion ]; description = "Inclusion of files in executables at compile-time"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "incremental" = callPackage @@ -119347,43 +119908,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "inline-r" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, criterion - , data-default-class, deepseq, directory, exceptions, filepath - , ieee754, inline-c, mtl, pretty, primitive, process - , quickcheck-assertions, R, reflection, setenv, silently - , singletons, strict, tasty, tasty-expected-failure, tasty-golden - , tasty-hunit, tasty-quickcheck, template-haskell, temporary, text - , th-lift, th-orphans, transformers, unix, vector + "inline-java_0_8_3" = callPackage + ({ mkDerivation, base, bytestring, Cabal, directory, filepath, ghc + , hspec, jni, jvm, language-java, mtl, process, template-haskell + , temporary, text }: mkDerivation { - pname = "inline-r"; - version = "0.9.1"; - sha256 = "1wpvyagc56yjkxvaw7a64gl2i4qfn4cgb47nx53pc6wcph7cyras"; - revision = "1"; - editedCabalFile = "0gid75ls60mfl0017716mqkypsbsv92lm1lsx2mf8vvd30znhcv0"; + pname = "inline-java"; + version = "0.8.3"; + sha256 = "01xg2ml1khdns5w30n83ibl3k0lc2ym7n0dgvkxgy17b5m8r6kbb"; libraryHaskellDepends = [ - aeson base bytestring containers data-default-class deepseq - exceptions inline-c mtl pretty primitive process reflection setenv - singletons template-haskell text th-lift th-orphans transformers - unix vector - ]; - libraryPkgconfigDepends = [ R ]; - testHaskellDepends = [ - base bytestring directory filepath ieee754 mtl process - quickcheck-assertions silently singletons strict tasty - tasty-expected-failure tasty-golden tasty-hunit tasty-quickcheck - template-haskell temporary text unix vector - ]; - benchmarkHaskellDepends = [ - base criterion filepath primitive process singletons - template-haskell vector + base bytestring Cabal directory filepath ghc jni jvm language-java + mtl process template-haskell temporary text ]; - description = "Seamlessly call R from Haskell and vice versa. No FFI required."; + testHaskellDepends = [ base hspec jni jvm text ]; + description = "Java interop via inline Java code in Haskell modules"; license = stdenv.lib.licenses.bsd3; - }) {inherit (pkgs) R;}; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; - "inline-r_0_9_2" = callPackage + "inline-r" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion , data-default-class, deepseq, directory, exceptions, filepath , ieee754, inline-c, mtl, pretty, primitive, process @@ -119415,7 +119959,6 @@ self: { ]; description = "Seamlessly call R from Haskell and vice versa. No FFI required."; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) R;}; "inliterate" = callPackage @@ -120290,8 +120833,8 @@ self: { pname = "invariant"; version = "0.5"; sha256 = "1zz9a5irmpma5qchvvp7qin1s7cfnhvpg3b452xxysgbxvmcmfw0"; - revision = "1"; - editedCabalFile = "04sxa2jfv613ff3fxpnk0cn31f6fr80gzr7va47nrc0abp34vd7y"; + revision = "2"; + editedCabalFile = "01n0v2qmbyd44z3wvha6vmbf1nr3bar205nk1r8hsq9jsmrfzaj1"; libraryHaskellDepends = [ array base bifunctors comonad containers contravariant ghc-prim profunctors semigroups StateVar stm tagged template-haskell @@ -122434,6 +122977,7 @@ self: { libraryHaskellDepends = [ base diet ]; description = "Functions to simulate Java's Character class"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "java-poker" = callPackage @@ -122499,16 +123043,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "javascript-extras_0_4_0_0" = callPackage - ({ mkDerivation, base, deepseq, ghcjs-base-stub, parallel, text }: + "javascript-extras_0_5_0_0" = callPackage + ({ mkDerivation, base, deepseq, ghcjs-base-stub, newtype-generics + , parallel, text + }: mkDerivation { pname = "javascript-extras"; - version = "0.4.0.0"; - sha256 = "0qpz8q5pr939y35y3r8x83irb2nl9vmh50wzjii824kr25z5wipd"; + version = "0.5.0.0"; + sha256 = "1p87nkjmc5gjbj95wdchvj7ha7v5zfbricibakqkcbsahmgddk4c"; + revision = "1"; + editedCabalFile = "0y29kvmhpngv5qm0hi8kixmpxzgzih0dlpg77658ikw3mn5x30p1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base deepseq ghcjs-base-stub parallel text + base deepseq ghcjs-base-stub newtype-generics parallel text ]; executableHaskellDepends = [ base ghcjs-base-stub ]; description = "Extra javascript functions when using GHCJS"; @@ -123069,19 +123617,20 @@ self: { "jsaddle" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring - , bytestring, containers, deepseq, filepath, ghc-prim, http-types - , lens, primitive, process, random, ref-tf, scientific, stm, text - , time, transformers, unordered-containers, vector + , bytestring, containers, deepseq, exceptions, filepath, ghc-prim + , http-types, lens, primitive, process, random, ref-tf, scientific + , stm, text, time, transformers, unliftio-core + , unordered-containers, vector }: mkDerivation { pname = "jsaddle"; - version = "0.9.4.0"; - sha256 = "0lk4cbvl2n3zcc709hjcnxw3wm1vd49dqlm12cwy9im4aif1zbq1"; + version = "0.9.5.0"; + sha256 = "1b1d8dvj5lqpn0k6ay90jdgm0a05vbchxy4l3r9s4fn4mx56jp9z"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring bytestring containers - deepseq filepath ghc-prim http-types lens primitive process random - ref-tf scientific stm text time transformers unordered-containers - vector + deepseq exceptions filepath ghc-prim http-types lens primitive + process random ref-tf scientific stm text time transformers + unliftio-core unordered-containers vector ]; description = "Interface for JavaScript that works with GHCJS and GHC"; license = stdenv.lib.licenses.mit; @@ -123352,10 +123901,8 @@ self: { }: mkDerivation { pname = "json-autotype"; - version = "1.1.2"; - sha256 = "1gf7g5y46wpkkhdnmvi85h518a59yb5j8ffgrnb82cs5zjwjpa9j"; - revision = "1"; - editedCabalFile = "0qc69s8wcsfy8h8mbz2iyxi02gwissb93wn5gapwisinhm44ldpd"; + version = "2.0.0"; + sha256 = "0mip3k489321sqzzwbv0sbcscv2q9n4lbc63sx8lslsy95da9x68"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -124697,6 +125244,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "kan-extensions_5_2" = callPackage + ({ mkDerivation, adjunctions, array, base, comonad, containers + , contravariant, distributive, free, invariant, mtl, profunctors + , semigroupoids, tagged, transformers, transformers-compat + }: + mkDerivation { + pname = "kan-extensions"; + version = "5.2"; + sha256 = "1lyvyiwwh962j2nnnsqzlvp5zq6z8p3spvhmji99cjvldxc7wwkb"; + libraryHaskellDepends = [ + adjunctions array base comonad containers contravariant + distributive free invariant mtl profunctors semigroupoids tagged + transformers transformers-compat + ]; + description = "Kan extensions, Kan lifts, the Yoneda lemma, and (co)density (co)monads"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "kangaroo" = callPackage ({ mkDerivation, array, base }: mkDerivation { @@ -124773,8 +125339,8 @@ self: { pname = "kansas-comet"; version = "0.4"; sha256 = "1q9rffh6589a5am8mvfzxzwws34vg08rdjxggfabhmg9y9jla6hz"; - revision = "14"; - editedCabalFile = "0iz92v375bvfp1yib7xmvwwci2ndh68fy20597dvc0b6wpjx76lq"; + revision = "16"; + editedCabalFile = "1fnncjd9wjwrnl0247gizlvwklihjbfk21pad6a4mqnaa3li5672"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base containers data-default-class scotty stm text time @@ -125015,6 +125581,7 @@ self: { ]; description = "Katip scribe that logs to Rollbar"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "katip-scalyr-scribe" = callPackage @@ -125033,6 +125600,7 @@ self: { ]; description = "A katip scribe for logging to json"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "katip-syslog" = callPackage @@ -125790,8 +126358,8 @@ self: { pname = "keys"; version = "3.12"; sha256 = "0may9nrlfji2mmypl9q47lcpg4r793hmm4i22x7j4l6zz67sggyl"; - revision = "2"; - editedCabalFile = "0cy2fdxxqg0bgkb8xhnw6zws00d78bpk48xv7zzmvnj549l819ib"; + revision = "3"; + editedCabalFile = "164z97ck2svam9c5gc05jklw8ai5nna7dknwwsp9nvw7wcw1dmln"; libraryHaskellDepends = [ array base comonad containers free hashable semigroupoids semigroups tagged transformers transformers-compat @@ -125801,6 +126369,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "keys_3_12_1" = callPackage + ({ mkDerivation, array, base, comonad, containers, free, hashable + , semigroupoids, semigroups, tagged, transformers + , transformers-compat, unordered-containers + }: + mkDerivation { + pname = "keys"; + version = "3.12.1"; + sha256 = "1yqm4gpshsgswx6w78z64c83gpydh6jhgslx2lnc10nzhy0s9kkz"; + libraryHaskellDepends = [ + array base comonad containers free hashable semigroupoids + semigroups tagged transformers transformers-compat + unordered-containers + ]; + description = "Keyed functors and containers"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "keysafe" = callPackage ({ mkDerivation, aeson, argon2, async, base, bloomfilter , bytestring, containers, deepseq, directory, disk-free-space @@ -126858,8 +127445,8 @@ self: { }: mkDerivation { pname = "lambdabot"; - version = "5.1.0.1"; - sha256 = "195xm7ncqfpj51vipmv7di1yqba9iy6c38a0rqrkji0w13aprp14"; + version = "5.1.0.2"; + sha256 = "1nzjlxyzrri8zw67flqn1arz10mgbmyglhvf6pg4r8w78iwg5nk3"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -126883,8 +127470,8 @@ self: { }: mkDerivation { pname = "lambdabot-core"; - version = "5.1.0.1"; - sha256 = "0w49s8n0bj0fbdjikgy6p2mlbrcq5069m7yqwdwiqmffi7hl5dgb"; + version = "5.1.0.2"; + sha256 = "1n0cqkbiadc169vq7pj5zwvi3yay6db60q8pdk4kci0s9clz4161"; libraryHaskellDepends = [ base binary bytestring containers dependent-map dependent-sum dependent-sum-template directory edit-distance filepath haskeline @@ -126909,8 +127496,8 @@ self: { }: mkDerivation { pname = "lambdabot-haskell-plugins"; - version = "5.1.0.2"; - sha256 = "1vr4f92zsjdr2j1zxb2v1hmyrb4lvq32c08jgind7apkmvqjgm19"; + version = "5.1.0.3"; + sha256 = "1hka7kb2j5nqzv9jljjyylfyrf5z3hsfp2sfgv95y5qsr2b6g96a"; libraryHaskellDepends = [ array arrows base bytestring containers data-memocombinators directory filepath haskell-src-exts-simple hoogle HTTP IOSpec @@ -128990,6 +129577,7 @@ self: { libraryHaskellDepends = [ alex-tools base text ]; description = "A collection of different layout implementations"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "layouting" = callPackage @@ -129668,8 +130256,8 @@ self: { pname = "lens"; version = "4.16.1"; sha256 = "1im4drhbydbawd6i0jsrzpqihnmx4ywpkg7yg94ddwsw3mxwkgpm"; - revision = "1"; - editedCabalFile = "12ycfzkc87fp787a5iq3k20mrfjd6b0r2d0dr7zscfd81sgw4shx"; + revision = "2"; + editedCabalFile = "11h83lj5mba4grhz1qx3irz10ysm9c3k7k6i6xv2cr60q8xin3ri"; setupHaskellDepends = [ base Cabal cabal-doctest filepath ]; libraryHaskellDepends = [ array base base-orphans bifunctors bytestring call-stack comonad @@ -129694,6 +130282,47 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; + "lens_4_17" = callPackage + ({ mkDerivation, array, base, base-orphans, bifunctors, bytestring + , Cabal, cabal-doctest, call-stack, comonad, containers + , contravariant, criterion, deepseq, directory, distributive + , doctest, exceptions, filepath, free, generic-deriving, ghc-prim + , hashable, HUnit, kan-extensions, mtl, nats, parallel, profunctors + , QuickCheck, reflection, semigroupoids, semigroups, simple-reflect + , tagged, template-haskell, test-framework, test-framework-hunit + , test-framework-quickcheck2, test-framework-th, text + , th-abstraction, transformers, transformers-compat + , unordered-containers, vector, void + }: + mkDerivation { + pname = "lens"; + version = "4.17"; + sha256 = "1k087zfy10rijr3cikalj8p58d8ypfmhb4d29bsbw8qhakg68dj7"; + setupHaskellDepends = [ base Cabal cabal-doctest filepath ]; + libraryHaskellDepends = [ + array base base-orphans bifunctors bytestring call-stack comonad + containers contravariant distributive exceptions filepath free + ghc-prim hashable kan-extensions mtl parallel profunctors + reflection semigroupoids semigroups tagged template-haskell text + th-abstraction transformers transformers-compat + unordered-containers vector void + ]; + testHaskellDepends = [ + base bytestring containers deepseq directory doctest filepath + generic-deriving HUnit mtl nats parallel QuickCheck semigroups + simple-reflect test-framework test-framework-hunit + test-framework-quickcheck2 test-framework-th text transformers + unordered-containers vector + ]; + benchmarkHaskellDepends = [ + base bytestring comonad containers criterion deepseq + generic-deriving transformers unordered-containers vector + ]; + description = "Lenses, Folds and Traversals"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "lens-accelerate" = callPackage ({ mkDerivation, accelerate, base, lens }: mkDerivation { @@ -129812,6 +130441,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "lens-family-th_0_5_0_2" = callPackage + ({ mkDerivation, base, hspec, template-haskell, transformers }: + mkDerivation { + pname = "lens-family-th"; + version = "0.5.0.2"; + sha256 = "1rmhcnnlnll4mq7pqld5qg6crxh74gp0fqiwl6wn8l3ssgx5l9ww"; + libraryHaskellDepends = [ base template-haskell ]; + testHaskellDepends = [ base hspec template-haskell transformers ]; + description = "Generate lens-family style lenses"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "lens-labels" = callPackage ({ mkDerivation, base, ghc-prim }: mkDerivation { @@ -129835,6 +130477,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "lens-misc" = callPackage + ({ mkDerivation, base, lens, tagged, template-haskell }: + mkDerivation { + pname = "lens-misc"; + version = "0.0.2.0"; + sha256 = "1jyqxi83imkyd318m17p2z84zqaxyb08mk5gy7q7saay2blmz4jr"; + libraryHaskellDepends = [ base lens tagged template-haskell ]; + description = "Miscellaneous lens utilities"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "lens-named" = callPackage ({ mkDerivation, base, lens, template-haskell }: mkDerivation { @@ -131143,6 +131796,7 @@ self: { ]; testToolDepends = [ tasty-discover ]; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "lift-generics" = callPackage @@ -131153,8 +131807,8 @@ self: { pname = "lift-generics"; version = "0.1.2"; sha256 = "0kk05dp6n93jgxq4x1lrckjrca6lrwa7qklr3vpzc6iyrlbvv7qf"; - revision = "1"; - editedCabalFile = "02hg33ikmwl81zsw8fgppix740rdc3h8fv6nr9b9h37vizhs50zw"; + revision = "2"; + editedCabalFile = "171f8cpn0kw9psikx3n7cdwyqfwg8rr8gf1hja6g7pnm0683l5l8"; libraryHaskellDepends = [ base generic-deriving ghc-prim template-haskell ]; @@ -131594,8 +132248,8 @@ self: { pname = "linear"; version = "1.20.7"; sha256 = "1dna0zf4qwqwvslz0nkkfclvbflfvf10qydnjsi20wijilkbd22b"; - revision = "5"; - editedCabalFile = "0m67chpgxwakx62n22555nr2ii1hvspqcypjdwib9c1jrpg3ss95"; + revision = "6"; + editedCabalFile = "12ksfxwi0dc6laadswfp9ri9z7lnqf9qxh8vawmj2xnz8n1n73vx"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ adjunctions base base-orphans binary bytes cereal containers @@ -131611,6 +132265,35 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "linear_1_20_8" = callPackage + ({ mkDerivation, adjunctions, base, base-orphans, binary, bytes + , bytestring, Cabal, cabal-doctest, cereal, containers, deepseq + , distributive, doctest, ghc-prim, hashable, HUnit, lens + , reflection, semigroupoids, semigroups, simple-reflect, tagged + , template-haskell, test-framework, test-framework-hunit + , transformers, transformers-compat, unordered-containers, vector + , void + }: + mkDerivation { + pname = "linear"; + version = "1.20.8"; + sha256 = "046vkvxlb0s286qr55s0c6db0rlwbm1cmlmwhrrkqbkzhfcipgay"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + adjunctions base base-orphans binary bytes cereal containers + deepseq distributive ghc-prim hashable lens reflection + semigroupoids semigroups tagged template-haskell transformers + transformers-compat unordered-containers vector void + ]; + testHaskellDepends = [ + base binary bytestring deepseq doctest HUnit lens reflection + simple-reflect test-framework test-framework-hunit vector + ]; + description = "Linear Algebra"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "linear-accelerate" = callPackage ({ mkDerivation, accelerate, base, Cabal, cabal-doctest , distributive, doctest, lens, linear @@ -131776,20 +132459,19 @@ self: { }) {}; "linearmap-category" = callPackage - ({ mkDerivation, base, constrained-categories, containers - , free-vector-spaces, ieee754, lens, linear, manifolds-core - , semigroups, tagged, transformers, vector, vector-space + ({ mkDerivation, base, call-stack, constrained-categories + , containers, free-vector-spaces, ieee754, lens, linear + , manifolds-core, semigroups, tagged, transformers, vector + , vector-space }: mkDerivation { pname = "linearmap-category"; - version = "0.3.4.0"; - sha256 = "0idmaw25cz7lk3kr9n0jri776j0qajrlc9j1aki0brvx6p6yh2dp"; - revision = "1"; - editedCabalFile = "0vrx3ws23qg1ygh1ksvgrpz92nhnr1nmrwy8a3ax08n8jcx2nrrw"; + version = "0.3.5.0"; + sha256 = "0qmd0nz343j3j3kprbhwfkglcswfcawfy0y6g4ai6nzdga42nfrf"; libraryHaskellDepends = [ - base constrained-categories containers free-vector-spaces ieee754 - lens linear manifolds-core semigroups tagged transformers vector - vector-space + base call-stack constrained-categories containers + free-vector-spaces ieee754 lens linear manifolds-core semigroups + tagged transformers vector vector-space ]; description = "Native, complete, matrix-free linear algebra"; license = stdenv.lib.licenses.gpl3; @@ -135713,8 +136395,8 @@ self: { pname = "machines"; version = "0.6.3"; sha256 = "1kxypm26xxd30979yrg94pnaaj3yfn180ri3y4z2xsm2m5iyiliz"; - revision = "7"; - editedCabalFile = "00wq0lnz081bcjrnsg2pvn3i08b4ssgqm92n5j0lpqlym2vm0ar8"; + revision = "9"; + editedCabalFile = "1z8khbpx7yjlpm06q7immwk3jm1h2q8kf52aksy11lkmns9ladvl"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ adjunctions base comonad containers distributive mtl pointed @@ -135729,6 +136411,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "machines_0_6_4" = callPackage + ({ mkDerivation, adjunctions, base, Cabal, cabal-doctest, comonad + , conduit, containers, criterion, distributive, doctest, mtl, pipes + , pointed, profunctors, semigroupoids, semigroups, streaming + , transformers, transformers-compat, void + }: + mkDerivation { + pname = "machines"; + version = "0.6.4"; + sha256 = "0s3pvdklanw6a41pyyqrplm3vid63dpy6vd6qhp86dnb4wp2ppkj"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + adjunctions base comonad containers distributive mtl pointed + profunctors semigroupoids semigroups transformers + transformers-compat void + ]; + testHaskellDepends = [ base doctest ]; + benchmarkHaskellDepends = [ + base conduit criterion mtl pipes streaming + ]; + description = "Networked stream transducers"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "machines-amazonka" = callPackage ({ mkDerivation, amazonka, amazonka-autoscaling, amazonka-core , amazonka-ec2, amazonka-s3, amazonka-sts, base @@ -136867,8 +137574,8 @@ self: { }: mkDerivation { pname = "manifold-random"; - version = "0.4.5.0"; - sha256 = "0z21jcrzky80fq172b2s0hwna4g1kzfzval40cdl6glf0l2zfimv"; + version = "0.5.0.0"; + sha256 = "19p2yh8yrav6dljmw8mz3xnghxf2h9a5z5wqxnb6zsrl11mds95g"; libraryHaskellDepends = [ base constrained-categories linearmap-category manifolds random-fu semigroups vector-space @@ -136879,27 +137586,29 @@ self: { }) {}; "manifolds" = callPackage - ({ mkDerivation, base, call-stack, comonad, constrained-categories - , containers, deepseq, free, free-vector-spaces, lens, linear - , linearmap-category, manifolds-core, MemoTrie, number-show - , placeholders, pragmatic-show, QuickCheck, semigroups, tagged + ({ mkDerivation, array, base, call-stack, comonad + , constrained-categories, containers, deepseq, free + , free-vector-spaces, ieee754, lens, linear, linearmap-category + , manifolds-core, MemoTrie, number-show, placeholders + , pragmatic-show, QuickCheck, semigroups, spatial-rotations, tagged , tasty, tasty-hunit, tasty-quickcheck, transformers, vector , vector-space, void }: mkDerivation { pname = "manifolds"; - version = "0.4.5.0"; - sha256 = "0paq7x9nhna74q4y7gvwlvwfpzxil9dx9ysg3r6k5as4i9687442"; + version = "0.5.0.0"; + sha256 = "1261vap8raffngdxmzv042carjdlcssqbpa9vs3qi0x3jbbwiywc"; libraryHaskellDepends = [ - base call-stack comonad constrained-categories containers deepseq - free free-vector-spaces lens linear linearmap-category - manifolds-core MemoTrie number-show placeholders pragmatic-show - QuickCheck semigroups tagged transformers vector vector-space void + array base call-stack comonad constrained-categories containers + deepseq free free-vector-spaces ieee754 lens linear + linearmap-category manifolds-core MemoTrie number-show placeholders + pragmatic-show QuickCheck semigroups spatial-rotations tagged + transformers vector vector-space void ]; testHaskellDepends = [ base constrained-categories containers lens linear - linearmap-category pragmatic-show tasty tasty-hunit - tasty-quickcheck vector-space + linearmap-category pragmatic-show spatial-rotations tasty + tasty-hunit tasty-quickcheck vector-space ]; description = "Coordinate-free hypersurfaces"; license = stdenv.lib.licenses.gpl3; @@ -136910,8 +137619,8 @@ self: { ({ mkDerivation, base, call-stack, tagged, vector-space }: mkDerivation { pname = "manifolds-core"; - version = "0.4.5.0"; - sha256 = "1g2lb8f2l9gwpflifm8idvf2w6if497gc6pgpr7j6s9c7byh8p3p"; + version = "0.5.0.0"; + sha256 = "0b8ac9l2asqlhazl0wlgb0qiyj1adk89m5fvhqqx1nw829dly6gw"; libraryHaskellDepends = [ base call-stack tagged vector-space ]; description = "The basic classes for the manifolds hierarchy"; license = stdenv.lib.licenses.gpl3; @@ -137797,6 +138506,7 @@ self: { ]; description = "Read and Display representation of matrix like \"x,y,z\""; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "matrix-market" = callPackage @@ -139140,6 +139850,7 @@ self: { ]; description = "Haskell binding for Menoh DNN inference library"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {menoh = null;}; "mercury-api" = callPackage @@ -139630,42 +140341,6 @@ self: { }: mkDerivation { pname = "microformats2-parser"; - version = "1.0.1.7"; - sha256 = "1waqcw63ygn6yjs7720l94kssfsrjdxfsp70kri498zsziia9w6y"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-qq attoparsec base base-compat blaze-markup bytestring - containers data-default either errors html-conduit lens-aeson - network-uri pcre-heavy safe tagsoup text time transformers - unordered-containers vector xml-lens xss-sanitize - ]; - executableHaskellDepends = [ - aeson aeson-pretty base base-compat blaze-html blaze-markup - data-default network network-uri options scotty text wai-cli - wai-extra - ]; - testHaskellDepends = [ - aeson-qq base base-compat bytestring data-default hspec - hspec-expectations-pretty-diff html-conduit mtl network-uri - raw-strings-qq template-haskell text time xml-lens - ]; - description = "A Microformats 2 parser"; - license = stdenv.lib.licenses.publicDomain; - }) {}; - - "microformats2-parser_1_0_1_8" = callPackage - ({ mkDerivation, aeson, aeson-pretty, aeson-qq, attoparsec, base - , base-compat, blaze-html, blaze-markup, bytestring, containers - , data-default, either, errors, hspec - , hspec-expectations-pretty-diff, html-conduit, lens-aeson, mtl - , network, network-uri, options, pcre-heavy, raw-strings-qq, safe - , scotty, tagsoup, template-haskell, text, time, transformers - , unordered-containers, vector, wai-cli, wai-extra, xml-lens - , xss-sanitize - }: - mkDerivation { - pname = "microformats2-parser"; version = "1.0.1.8"; sha256 = "0hb5i60w369lngfw5a3bai5zvlgchcf1vvxshp9md77lyl7h49ar"; isLibrary = true; @@ -139688,7 +140363,6 @@ self: { ]; description = "A Microformats 2 parser"; license = stdenv.lib.licenses.publicDomain; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "microformats2-types" = callPackage @@ -140399,23 +141073,11 @@ self: { ({ mkDerivation, base, bytestring, containers, text }: mkDerivation { pname = "mime-types"; - version = "0.1.0.7"; - sha256 = "1fg9cqpp5lswk8ajlq4f41n12c2v2naz179l8dsz6zisjqj4l5l3"; - libraryHaskellDepends = [ base bytestring containers text ]; - description = "Basic mime-type handling types and functions"; - license = stdenv.lib.licenses.mit; - }) {}; - - "mime-types_0_1_0_8" = callPackage - ({ mkDerivation, base, bytestring, containers, text }: - mkDerivation { - pname = "mime-types"; version = "0.1.0.8"; sha256 = "14ccl2842ya17zyj0bpc7vzklbyqvvydpbypn69h2fmhgji192x8"; libraryHaskellDepends = [ base bytestring containers text ]; description = "Basic mime-type handling types and functions"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "minecraft-data" = callPackage @@ -140595,6 +141257,38 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "minio-hs_1_1_0" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , case-insensitive, conduit, conduit-extra, containers, cryptonite + , cryptonite-conduit, directory, filepath, http-client + , http-conduit, http-types, ini, memory, protolude, QuickCheck + , resourcet, tasty, tasty-hunit, tasty-quickcheck, tasty-smallcheck + , temporary, text, time, transformers, unliftio, unliftio-core + , xml-conduit + }: + mkDerivation { + pname = "minio-hs"; + version = "1.1.0"; + sha256 = "0nmjv4khbw5pi01sin6vksh8r7xy6v5y1fadiy9ww2fh9y5ix56b"; + libraryHaskellDepends = [ + aeson base base64-bytestring bytestring case-insensitive conduit + conduit-extra containers cryptonite cryptonite-conduit directory + filepath http-client http-conduit http-types ini memory protolude + resourcet text time transformers unliftio unliftio-core xml-conduit + ]; + testHaskellDepends = [ + aeson base base64-bytestring bytestring case-insensitive conduit + conduit-extra containers cryptonite cryptonite-conduit directory + filepath http-client http-conduit http-types ini memory protolude + QuickCheck resourcet tasty tasty-hunit tasty-quickcheck + tasty-smallcheck temporary text time transformers unliftio + unliftio-core xml-conduit + ]; + description = "A Minio Haskell Library for Amazon S3 compatible cloud storage"; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "minions" = callPackage ({ mkDerivation, ansi-terminal, base, MissingH, process, time }: mkDerivation { @@ -141013,6 +141707,7 @@ self: { ]; description = "Machine Learning Toolbox"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "mltool_0_2_0_1" = callPackage @@ -142157,6 +142852,24 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "monad-metrics_0_2_1_2" = callPackage + ({ mkDerivation, base, clock, ekg-core, exceptions, hashable + , microlens, mtl, text, transformers, unordered-containers + }: + mkDerivation { + pname = "monad-metrics"; + version = "0.2.1.2"; + sha256 = "0zxvdx75psdninvh7f7wqj498wav2cjmn94n5a3f5g8nvrs0n4rq"; + libraryHaskellDepends = [ + base clock ekg-core exceptions hashable microlens mtl text + transformers unordered-containers + ]; + testHaskellDepends = [ base ]; + description = "A convenient wrapper around EKG metrics"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "monad-mock" = callPackage ({ mkDerivation, base, constraints, exceptions, haskell-src-exts , haskell-src-meta, hspec, monad-control, mtl, template-haskell @@ -142551,6 +143264,7 @@ self: { testHaskellDepends = [ base containers hlint hspec transformers ]; description = "Monad transformer for recording timing events"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "monad-tx" = callPackage @@ -143593,6 +144307,40 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "morte_1_6_20" = callPackage + ({ mkDerivation, alex, array, base, binary, code-page, containers + , criterion, deepseq, Earley, formatting, http-client + , http-client-tls, microlens, microlens-mtl, mtl + , optparse-applicative, pipes, QuickCheck, system-fileio + , system-filepath, tasty, tasty-hunit, tasty-quickcheck, text + , transformers + }: + mkDerivation { + pname = "morte"; + version = "1.6.20"; + sha256 = "01m382137sa9if332y9aag8fl77f4sd3i8kxz5cp8g1p10iyjjbl"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + array base binary containers deepseq Earley formatting http-client + http-client-tls microlens microlens-mtl pipes system-fileio + system-filepath text transformers + ]; + libraryToolDepends = [ alex ]; + executableHaskellDepends = [ + base code-page formatting optparse-applicative text + ]; + testHaskellDepends = [ + base mtl QuickCheck system-filepath tasty tasty-hunit + tasty-quickcheck text transformers + ]; + benchmarkHaskellDepends = [ base criterion system-filepath text ]; + description = "A bare-bones calculus of constructions"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "mosaico-lib" = callPackage ({ mkDerivation, base, base-unicode-symbols, colour, diagrams-cairo , diagrams-core, diagrams-gtk, diagrams-lib, glib, gtk, JuicyPixels @@ -145602,8 +146350,8 @@ self: { ({ mkDerivation, base, mwc-random, primitive, transformers }: mkDerivation { pname = "mwc-probability"; - version = "2.0.3"; - sha256 = "18gnr5bjmz2bl717dhvg6hwj6z06y5sw2nmsw7d3vl37qd9rp6by"; + version = "2.0.4"; + sha256 = "0msi72qp5aps3n4ji565r4rzyjg7svwilsh8lch59y2b4q7fvscz"; libraryHaskellDepends = [ base mwc-random primitive transformers ]; description = "Sampling function-based probability distributions"; license = stdenv.lib.licenses.mit; @@ -146691,6 +147439,8 @@ self: { pname = "nats"; version = "1.1.2"; sha256 = "1v40drmhixck3pz3mdfghamh73l4rp71mzcviipv1y8jhrfxilmr"; + revision = "1"; + editedCabalFile = "1jzyysf758lfindlclqpzqcd0lrgrdv0rnz2lg8g1rvv07x2n7zh"; doHaddock = false; description = "Natural numbers"; license = stdenv.lib.licenses.bsd3; @@ -146800,8 +147550,8 @@ self: { pname = "natural-transformation"; version = "0.4"; sha256 = "1by8xwjc23l6pa9l4iv7zp82dykpll3vc3hgxk0pgva724n8xhma"; - revision = "5"; - editedCabalFile = "1wlmkq9k9aym4wig9rn5w6sygq2fg9kd02d18pfzgxw70icqjlq3"; + revision = "6"; + editedCabalFile = "0qdjf1756gmq6vjd1p7i4b398s7j1gqfiaz3yf894h5p6x1ym0zl"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base containers quickcheck-instances tasty tasty-quickcheck @@ -148008,26 +148758,6 @@ self: { }: mkDerivation { pname = "network-conduit-tls"; - version = "1.3.0"; - sha256 = "11a9s8spqccnv2x41846pqgkwvb554lrq7qdas78p7biw1d28vbl"; - libraryHaskellDepends = [ - base bytestring conduit conduit-extra connection data-default-class - network streaming-commons tls transformers unliftio-core - ]; - testHaskellDepends = [ - base bytestring conduit conduit-extra connection HUnit mtl - ]; - description = "Create TLS-aware network code with conduits"; - license = stdenv.lib.licenses.mit; - }) {}; - - "network-conduit-tls_1_3_2" = callPackage - ({ mkDerivation, base, bytestring, conduit, conduit-extra - , connection, data-default-class, HUnit, mtl, network - , streaming-commons, tls, transformers, unliftio-core - }: - mkDerivation { - pname = "network-conduit-tls"; version = "1.3.2"; sha256 = "0zxdsf7isv3l2g58vsvi8iwlrgf85v7ksa8636kr6ffycbhn1zgc"; libraryHaskellDepends = [ @@ -148039,7 +148769,6 @@ self: { ]; description = "Create TLS-aware network code with conduits"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "network-connection" = callPackage @@ -149778,6 +150507,7 @@ self: { sha256 = "1m4js4z27x43bkccbaqnlrmknfdiwqgdvvkfad7r4kgwdmil3mnc"; libraryHaskellDepends = [ base containers ]; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "non-empty-sequence" = callPackage @@ -150755,6 +151485,7 @@ self: { testHaskellDepends = [ base numhask-prelude QuickCheck tasty ]; description = "Laws and tests for numhask"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "nums" = callPackage @@ -151423,25 +152154,26 @@ self: { "odbc" = callPackage ({ mkDerivation, async, base, bytestring, containers, deepseq - , formatting, hspec, optparse-applicative, QuickCheck, semigroups - , text, time, transformers, unixODBC, unliftio-core, weigh + , formatting, hspec, optparse-applicative, parsec, QuickCheck + , semigroups, template-haskell, text, time, transformers, unixODBC + , unliftio-core, weigh }: mkDerivation { pname = "odbc"; - version = "0.0.5"; - sha256 = "06b52hd9bxidp62y2h856ac90pypcv72q533i7lywf4gjj1q0grn"; + version = "0.2.0"; + sha256 = "1dv7h2c6y59dsyhz99k1lzydms618i65jra7gzacf88zb4idnvi7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - async base bytestring containers deepseq formatting semigroups text - time transformers unliftio-core + async base bytestring containers deepseq formatting parsec + semigroups template-haskell text time transformers unliftio-core ]; librarySystemDepends = [ unixODBC ]; executableHaskellDepends = [ base bytestring optparse-applicative text ]; testHaskellDepends = [ - base bytestring hspec QuickCheck text time + base bytestring hspec parsec QuickCheck text time ]; benchmarkHaskellDepends = [ async base text weigh ]; description = "Haskell binding to the ODBC API, aimed at SQL Server driver"; @@ -153968,8 +154700,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "packcheck"; - version = "0.3.0"; - sha256 = "02ixa91wp0jxdc046gi5qxyyw332znkgknfz5chf4j3ydn7qjlha"; + version = "0.3.1"; + sha256 = "1s171bgqpqh61vaf8s91bbpgn816380bma4wb8in4pnnaf2s0xhv"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; benchmarkHaskellDepends = [ base ]; @@ -158256,6 +158988,7 @@ self: { ]; description = "Manual migrations for the persistent library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "persistent-mongoDB" = callPackage @@ -159075,8 +159808,8 @@ self: { }: mkDerivation { pname = "phoityne-vscode"; - version = "0.0.24.0"; - sha256 = "1kk8bfvai1196960cqq6zg5xhs15jzwllw57n247csiifijs0b0v"; + version = "0.0.25.0"; + sha256 = "16l1w92i0nr6a9z4l9cq3372mqgis17nqhdky8a157cqa2if150b"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -160048,6 +160781,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pipes-concurrency_2_0_11" = callPackage + ({ mkDerivation, async, base, contravariant, pipes, semigroups, stm + , void + }: + mkDerivation { + pname = "pipes-concurrency"; + version = "2.0.11"; + sha256 = "03h87b11c64yvj28lxgbvjvqrsx0zfqb92v0apd8ypb9xxabqd4m"; + libraryHaskellDepends = [ + async base contravariant pipes semigroups stm void + ]; + testHaskellDepends = [ async base pipes stm ]; + description = "Concurrency for the pipes ecosystem"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "pipes-conduit" = callPackage ({ mkDerivation, base, conduit, mtl, pipes-core }: mkDerivation { @@ -160166,6 +160916,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pipes-extras_1_0_15" = callPackage + ({ mkDerivation, base, foldl, HUnit, lens, pipes, test-framework + , test-framework-hunit, transformers + }: + mkDerivation { + pname = "pipes-extras"; + version = "1.0.15"; + sha256 = "1cyb05bv5xkarab3090ikpjiqm79lr46n3nalplliz8jr4x67a82"; + libraryHaskellDepends = [ base foldl lens pipes transformers ]; + testHaskellDepends = [ + base HUnit pipes test-framework test-framework-hunit transformers + ]; + description = "Extra utilities for pipes"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "pipes-fastx" = callPackage ({ mkDerivation, attoparsec, base, bytestring, pipes , pipes-attoparsec, pipes-bytestring @@ -160262,8 +161029,8 @@ self: { }: mkDerivation { pname = "pipes-group"; - version = "1.0.10"; - sha256 = "1j37sj0i7lkmk228lchp5kkvf86fiwrkikwwrfibpb6xwixjmlr8"; + version = "1.0.11"; + sha256 = "1570chhj3i587wgsgz70d1p94j524wz86xaal7imwvgmw40gdacc"; libraryHaskellDepends = [ base free pipes pipes-parse transformers ]; @@ -160273,14 +161040,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "pipes-group_1_0_11" = callPackage + "pipes-group_1_0_12" = callPackage ({ mkDerivation, base, doctest, free, lens-family-core, pipes , pipes-parse, transformers }: mkDerivation { pname = "pipes-group"; - version = "1.0.11"; - sha256 = "1570chhj3i587wgsgz70d1p94j524wz86xaal7imwvgmw40gdacc"; + version = "1.0.12"; + sha256 = "1issfj3syi6lfbcdn3bhlbnlh86s92ldsb04c4ac69xipsgyhwqk"; libraryHaskellDepends = [ base free pipes pipes-parse transformers ]; @@ -161761,6 +162528,8 @@ self: { pname = "pointed"; version = "5.0.1"; sha256 = "1p91a762xglckscnhpflxzav8byf49a02mli3983i4kpr2jkaimr"; + revision = "1"; + editedCabalFile = "1ccjmzz3jf5ybrzv7qdwm3qb8rz0yskvi4ackrixyhdk8bg5f3nc"; libraryHaskellDepends = [ base comonad containers data-default-class hashable kan-extensions semigroupoids semigroups stm tagged transformers @@ -162276,29 +163045,6 @@ self: { }: mkDerivation { pname = "pomaps"; - version = "0.0.0.4"; - sha256 = "0mjfzj2j8b6337ivvnry7ylrw5g1ajxpqqzar1wmscm73ybr0xbn"; - libraryHaskellDepends = [ - base containers deepseq ghc-prim lattices - ]; - testHaskellDepends = [ - base ChasingBottoms containers doctest Glob lattices tasty - tasty-hspec tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base criterion deepseq lattices random vector - ]; - description = "Maps and sets of partial orders"; - license = stdenv.lib.licenses.mit; - }) {}; - - "pomaps_0_0_1_0" = callPackage - ({ mkDerivation, base, ChasingBottoms, containers, criterion - , deepseq, doctest, ghc-prim, Glob, lattices, random, tasty - , tasty-hspec, tasty-quickcheck, vector - }: - mkDerivation { - pname = "pomaps"; version = "0.0.1.0"; sha256 = "1vvvpqr3gnps425mv00scmab0hc8h93ylsiw07vm8cpafwkfxii8"; libraryHaskellDepends = [ @@ -162313,7 +163059,6 @@ self: { ]; description = "Maps and sets of partial orders"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "pomodoro" = callPackage @@ -163638,8 +164383,8 @@ self: { }: mkDerivation { pname = "potoki-core"; - version = "2.1"; - sha256 = "04i94rk7skcvaqyapl88iw1npz84jhd1gr17darjvwxyvdvrm1h0"; + version = "2.2"; + sha256 = "19isadkd9dw4wz1230yri345mdn71hx8qcj0mbsih14yv5ignlsv"; libraryHaskellDepends = [ acquire attoparsec base bytestring directory foldl hashable profunctors ptr stm text transformers unagi-chan @@ -163681,6 +164426,7 @@ self: { ]; description = "Streaming ZLib decompression"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "potrace" = callPackage @@ -164860,6 +165606,7 @@ self: { libraryHaskellDepends = [ base ghc-prim primitive semigroups ]; description = "Primitive byte array with type variable"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "prim-ref" = callPackage @@ -164959,6 +165706,8 @@ self: { pname = "primitive"; version = "0.6.4.0"; sha256 = "0r0cda7acvplgwaxy69kviv4jp7kkfi038by68gj4yfx4iwszgjc"; + revision = "1"; + editedCabalFile = "18a14k1yiam1m4l29rin9a0y53yp3nxvkz358nysld8aqwy2qsjv"; libraryHaskellDepends = [ base ghc-prim transformers ]; description = "Primitive memory-related operations"; license = stdenv.lib.licenses.bsd3; @@ -164995,6 +165744,7 @@ self: { base containers gauge ghc-prim primitive random ]; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "primitive-indexed" = callPackage @@ -165006,6 +165756,7 @@ self: { libraryHaskellDepends = [ base primitive ]; testHaskellDepends = [ base doctest QuickCheck ]; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "primitive-simd" = callPackage @@ -165774,14 +166525,31 @@ self: { pname = "profunctors"; version = "5.2.2"; sha256 = "0s1pwjidbn761xk43pmzyvn99hm3psdifjd78ylki7f97aiyd0g9"; - revision = "1"; - editedCabalFile = "1g6fvxq2npnyi8wv9mvwy35an68lrm5bf7xmx9x61mbwdxb6d0cg"; + revision = "2"; + editedCabalFile = "1ywlg9z8nlhd2avgb8c6gbkv8zyk7hvc25926bafyg0m0k8y1amq"; + libraryHaskellDepends = [ + base base-orphans bifunctors comonad contravariant distributive + semigroups tagged transformers + ]; + description = "Profunctors"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "profunctors_5_3" = callPackage + ({ mkDerivation, base, base-orphans, bifunctors, comonad + , contravariant, distributive, semigroups, tagged, transformers + }: + mkDerivation { + pname = "profunctors"; + version = "5.3"; + sha256 = "1dx3nkc27yxsrbrhh3iwhq7dl1xn6bj7n62yx6nh8vmpbg62lqvl"; libraryHaskellDepends = [ base base-orphans bifunctors comonad contravariant distributive semigroups tagged transformers ]; description = "Profunctors"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "progress" = callPackage @@ -166602,24 +167370,6 @@ self: { }: mkDerivation { pname = "protocol-buffers"; - version = "2.4.10"; - sha256 = "0rr7yla1gl199hk2zn7jr1p0nq166mi4dm43ild27y6bvrdc2kvk"; - revision = "1"; - editedCabalFile = "04cv52k497nmh04pflmjrl26vlbczvm3mk4qld0zrwqxkk6v0ris"; - libraryHaskellDepends = [ - array base binary bytestring containers directory filepath mtl - parsec syb utf8-string - ]; - description = "Parse Google Protocol Buffer specifications"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "protocol-buffers_2_4_11" = callPackage - ({ mkDerivation, array, base, binary, bytestring, containers - , directory, filepath, mtl, parsec, syb, utf8-string - }: - mkDerivation { - pname = "protocol-buffers"; version = "2.4.11"; sha256 = "1s41iprw4w6g56phrgali2b59isn2s67nzfwr38yfgib3lm4kjs7"; libraryHaskellDepends = [ @@ -166628,29 +167378,12 @@ self: { ]; description = "Parse Google Protocol Buffer specifications"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "protocol-buffers-descriptor" = callPackage ({ mkDerivation, base, bytestring, containers, protocol-buffers }: mkDerivation { pname = "protocol-buffers-descriptor"; - version = "2.4.10"; - sha256 = "1w4n0yqf5xhbs5yi0xj8ak268chngklc7sif2s3bjr0dwk7fi5d0"; - revision = "1"; - editedCabalFile = "03b3w0yawnjv5hpprkhj49s1fkj9ib03avyxgv3i9vj0n0ngbiz1"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base bytestring containers protocol-buffers - ]; - description = "Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "protocol-buffers-descriptor_2_4_11" = callPackage - ({ mkDerivation, base, bytestring, containers, protocol-buffers }: - mkDerivation { - pname = "protocol-buffers-descriptor"; version = "2.4.11"; sha256 = "06k8sz0i021mizdgh01rx7v08wc767njwppimgmm2hyg6k4bv450"; enableSeparateDataOutput = true; @@ -166659,7 +167392,6 @@ self: { ]; description = "Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "protocol-buffers-descriptor-fork" = callPackage @@ -167456,8 +168188,8 @@ self: { }: mkDerivation { pname = "pure-zlib"; - version = "0.6.3"; - sha256 = "1bsbpzywbh33kp2l7p80g8pnh66fd76sii4900f80x1yjig03gb8"; + version = "0.6.4"; + sha256 = "05rhvhvdn8ly5jldxg3q7ip6zflzqa1wyj8mlcl0scgsngn9lrzb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -170564,14 +171296,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "rank2classes_1_1" = callPackage + "rank2classes_1_1_0_1" = callPackage ({ mkDerivation, base, distributive, doctest, tasty, tasty-hunit , template-haskell, transformers }: mkDerivation { pname = "rank2classes"; - version = "1.1"; - sha256 = "0m7zxgjql399xm97v9jczg13mclnwnwbls8d788iyfqbhlk3slkf"; + version = "1.1.0.1"; + sha256 = "1iw2xanyv7rw995sy3c0dvkjl3js4bd7n2hz0x509pkz8hzsa93w"; libraryHaskellDepends = [ base distributive template-haskell transformers ]; @@ -171196,8 +171928,8 @@ self: { pname = "rcu"; version = "0.2.2"; sha256 = "0lj88xif38zh1qkpfzyarm36khzavqsl8chjma062b1pvhhlc9lk"; - revision = "3"; - editedCabalFile = "1qyc8jb97mfcmijn825s6mr244mx2kqvam5mm519dm6dyk8kchpa"; + revision = "4"; + editedCabalFile = "18gaaz7pj7x9yv2na1zbqavirrj93c7q6z28r4502if0w1w8wk8f"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal cabal-doctest ]; @@ -172164,6 +172896,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "recursion-schemes_5_0_3" = callPackage + ({ mkDerivation, base, base-orphans, comonad, free, HUnit + , template-haskell, th-abstraction, transformers + }: + mkDerivation { + pname = "recursion-schemes"; + version = "5.0.3"; + sha256 = "17x0kjl3yqanx234mb838yy21gw4if6qgzpi5l0b17m8llvp086v"; + revision = "1"; + editedCabalFile = "0r0qwxa0yg6814w8zfdla3k25x971a7pdr06sqws7fz5zri8rrn8"; + libraryHaskellDepends = [ + base base-orphans comonad free template-haskell th-abstraction + transformers + ]; + testHaskellDepends = [ base HUnit template-haskell transformers ]; + description = "Generalized bananas, lenses and barbed wire"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "recursion-schemes-ext" = callPackage ({ mkDerivation, base, composition-prelude, criterion, deepseq , hspec, lens, recursion-schemes @@ -172434,6 +173186,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "reducers_3_12_3" = callPackage + ({ mkDerivation, array, base, bytestring, containers, fingertree + , hashable, semigroupoids, semigroups, text, transformers + , unordered-containers + }: + mkDerivation { + pname = "reducers"; + version = "3.12.3"; + sha256 = "09wf8pl9ycglcv6qj5ba26gkg2s5iy81hsx9xp0q8na0cwvp71ki"; + libraryHaskellDepends = [ + array base bytestring containers fingertree hashable semigroupoids + semigroups text transformers unordered-containers + ]; + description = "Semigroups, specialized containers and a general map/reduce framework"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "reedsolomon" = callPackage ({ mkDerivation, base, bytestring, criterion, exceptions, gitrev , loop, mtl, primitive, profunctors, QuickCheck, random, tasty @@ -172655,6 +173425,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "reflection_2_1_4" = callPackage + ({ mkDerivation, base, template-haskell }: + mkDerivation { + pname = "reflection"; + version = "2.1.4"; + sha256 = "0kf4a5ijw6jfnfibjcrpdy9vzh1n6v2pxia8dhyyqdissiwc8bzj"; + libraryHaskellDepends = [ base template-haskell ]; + description = "Reifies arbitrary terms into types that can be reflected back into terms"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "reflection-extras" = callPackage ({ mkDerivation, aeson, base, constraints, lens, reflection, tagged }: @@ -173885,6 +174667,7 @@ self: { ]; description = "Sensible RLP encoding"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "relation" = callPackage @@ -173939,7 +174722,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "relational-query_0_12_0_0" = callPackage + "relational-query_0_12_0_1" = callPackage ({ mkDerivation, array, base, bytestring, containers, dlist , names-th, persistable-record, product-isomorphic , quickcheck-simple, sql-words, template-haskell, text @@ -173947,8 +174730,8 @@ self: { }: mkDerivation { pname = "relational-query"; - version = "0.12.0.0"; - sha256 = "0rp6fi93wyr0w2rhng8ymn9bdh4pdrn488l0lnm4f5ris50dz2y1"; + version = "0.12.0.1"; + sha256 = "0njmp3209499qvm30dy4k9gc3fpnf00bkkd42f8cif9gi5fhbwhz"; libraryHaskellDepends = [ array base bytestring containers dlist names-th persistable-record product-isomorphic sql-words template-haskell text th-reify-compat @@ -174035,8 +174818,8 @@ self: { }: mkDerivation { pname = "relational-record-examples"; - version = "0.5.1.0"; - sha256 = "0xsd1syrs1fsxkkbc7zb0dwl9wqjyf31n44h4b3la93pcjv4dl7q"; + version = "0.5.1.1"; + sha256 = "0ll6yjp0scbv2fl18b8qplj488a4wp985dr2km0hf4zjb1mri0i0"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -176017,6 +176800,103 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "rfc-env" = callPackage + ({ mkDerivation, base, envy, network, rfc-prelude, time }: + mkDerivation { + pname = "rfc-env"; + version = "0.0.0.1"; + sha256 = "1s3r5wpap3rj7fxx1wvxjk5671jcnllvplz631vagwbyl9p755zh"; + libraryHaskellDepends = [ base envy network rfc-prelude time ]; + description = "Environment variable support from the Robert Fischer Commons"; + license = stdenv.lib.licenses.mit; + }) {}; + + "rfc-http-client" = callPackage + ({ mkDerivation, aeson, base, http-client, http-client-tls + , http-types, lens, network-uri, rfc-prelude, scientific + , servant-server, vector, wreq + }: + mkDerivation { + pname = "rfc-http-client"; + version = "0.0.0.1"; + sha256 = "0ksmv0vhprc8d2ck003jim03js5ifqw1vg7319afmwzzmqp8lwn1"; + libraryHaskellDepends = [ + aeson base http-client http-client-tls http-types lens network-uri + rfc-prelude scientific servant-server vector wreq + ]; + description = "The HTTP client extensions from the Robert Fischer Commons"; + license = stdenv.lib.licenses.mit; + }) {}; + + "rfc-prelude" = callPackage + ({ mkDerivation, aeson, base, bifunctors, bytestring + , classy-prelude, containers, data-default, http-api-data + , integer-logarithms, lens, monad-control, network-uri, text + , text-conversions, time, time-units, transformers, tuple, unliftio + , unliftio-core, uuid-types + }: + mkDerivation { + pname = "rfc-prelude"; + version = "0.0.0.2"; + sha256 = "1d2kvmidbglc60p3zy6wd9af6w27b303znqh09rjms5ifri0k6kf"; + libraryHaskellDepends = [ + aeson base bifunctors bytestring classy-prelude containers + data-default http-api-data integer-logarithms lens monad-control + network-uri text text-conversions time time-units transformers + tuple unliftio unliftio-core uuid-types + ]; + description = "The Prelude from the Robert Fischer Commons"; + license = stdenv.lib.licenses.mit; + }) {}; + + "rfc-psql" = callPackage + ({ mkDerivation, base, bytestring, network, postgresql-typed + , resource-pool, rfc-env, rfc-prelude, transformers + }: + mkDerivation { + pname = "rfc-psql"; + version = "0.0.0.1"; + sha256 = "1vaahacbk0c1zv7md6sb5lymncbzr7xxfn31cmd4dd8gjwdfk4zb"; + libraryHaskellDepends = [ + base bytestring network postgresql-typed resource-pool rfc-env + rfc-prelude transformers + ]; + description = "The PostgreSQL extensions from the Robert Fischer Commons"; + license = stdenv.lib.licenses.mit; + }) {}; + + "rfc-redis" = callPackage + ({ mkDerivation, base, hedis, rfc-env, rfc-prelude, time }: + mkDerivation { + pname = "rfc-redis"; + version = "0.0.0.1"; + sha256 = "00r8mghkgqgf6mh4v5jspahdcpb3bj5i82rmiyasv01a7gp6gzsg"; + libraryHaskellDepends = [ base hedis rfc-env rfc-prelude time ]; + description = "The Redis extensions from the Robert Fischer Commons"; + license = stdenv.lib.licenses.mit; + }) {}; + + "rfc-servant" = callPackage + ({ mkDerivation, aeson, amazonka, base, binary, blaze-html + , data-default, http-types, lens, markdown, natural-transformation + , rfc-http-client, rfc-prelude, rfc-psql, rfc-redis, servant + , servant-blaze, servant-docs, servant-server, servant-swagger + , servant-swagger-ui, swagger2, wai, wreq + }: + mkDerivation { + pname = "rfc-servant"; + version = "0.0.0.1"; + sha256 = "1p4j2lv4hj6bxqbanj4w0j00d1qm7np94gp7ap1kmjkdznsl4vhz"; + libraryHaskellDepends = [ + aeson amazonka base binary blaze-html data-default http-types lens + markdown natural-transformation rfc-http-client rfc-prelude + rfc-psql rfc-redis servant servant-blaze servant-docs + servant-server servant-swagger servant-swagger-ui swagger2 wai wreq + ]; + description = "The Servant extensions from the Robert Fischer Commons"; + license = stdenv.lib.licenses.mit; + }) {}; + "rfc1413-server" = callPackage ({ mkDerivation, base, network-simple, rfc1413-types }: mkDerivation { @@ -177418,8 +178298,8 @@ self: { }: mkDerivation { pname = "row-types"; - version = "0.2.2.0"; - sha256 = "1xv42yzv0xrb1bwqlmpmk7wwmq2mcf6d73g91aycq99hjq18bmcq"; + version = "0.2.3.0"; + sha256 = "1dihp1bd6aw2hn2jbrg9kgq0rvbspbfwvcx6vv9zrq2j0jbbq250"; libraryHaskellDepends = [ base constraints deepseq hashable text unordered-containers ]; @@ -180006,6 +180886,34 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "scotty_0_11_2" = callPackage + ({ mkDerivation, aeson, async, base, blaze-builder, bytestring + , case-insensitive, data-default-class, directory, exceptions, fail + , hpc-coveralls, hspec, hspec-discover, hspec-wai, http-types + , lifted-base, monad-control, mtl, nats, network, regex-compat + , text, transformers, transformers-base, transformers-compat, wai + , wai-extra, warp + }: + mkDerivation { + pname = "scotty"; + version = "0.11.2"; + sha256 = "18lxgnj05p4hk7pp4a84biz2dn387a5vxwzyh1kslns1bra6zn0x"; + libraryHaskellDepends = [ + aeson base blaze-builder bytestring case-insensitive + data-default-class exceptions fail http-types monad-control mtl + nats network regex-compat text transformers transformers-base + transformers-compat wai wai-extra warp + ]; + testHaskellDepends = [ + async base bytestring data-default-class directory hpc-coveralls + hspec hspec-wai http-types lifted-base network text wai + ]; + testToolDepends = [ hspec-discover ]; + description = "Haskell web framework inspired by Ruby's Sinatra, using WAI and Warp"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "scotty-binding-play" = callPackage ({ mkDerivation, base, bytestring, hspec, http-client, HUnit, mtl , scotty, template-haskell, text, transformers @@ -180312,6 +181220,7 @@ self: { ]; description = "Transformer stack of error, reader, writer, state, and prompt monads"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "scrobble" = callPackage @@ -181219,6 +182128,7 @@ self: { executableHaskellDepends = [ base ]; description = "A Haskell library to make self-extracting executables"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "selfrestart" = callPackage @@ -181339,6 +182249,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "semigroupoids_5_3_1" = callPackage + ({ mkDerivation, base, base-orphans, bifunctors, Cabal + , cabal-doctest, comonad, containers, contravariant, distributive + , doctest, hashable, semigroups, tagged, template-haskell + , transformers, transformers-compat, unordered-containers + }: + mkDerivation { + pname = "semigroupoids"; + version = "5.3.1"; + sha256 = "13iqjckq3jzp6rxldrf3bcvk3061ssvsr6y0g5y9jq32z1hyr2fd"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + base base-orphans bifunctors comonad containers contravariant + distributive hashable semigroups tagged template-haskell + transformers transformers-compat unordered-containers + ]; + testHaskellDepends = [ base doctest ]; + description = "Semigroupoids: Category sans id"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "semigroupoids-syntax" = callPackage ({ mkDerivation, base, comonad, containers, contravariant , directory, distributive, doctest, filepath, QuickCheck @@ -181371,6 +182303,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "semigroups_0_18_5" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "semigroups"; + version = "0.18.5"; + sha256 = "17g29h62g1k51ghhvzkw72zksjgi6vs6bfipkj81pqw1dsprcamb"; + libraryHaskellDepends = [ base ]; + description = "Anything that associates"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "semigroups-actions" = callPackage ({ mkDerivation, base, containers, semigroups }: mkDerivation { @@ -182182,26 +183126,6 @@ self: { }: mkDerivation { pname = "servant-JuicyPixels"; - version = "0.3.0.3"; - sha256 = "0kb53kla03clkv0686awjm6nc57r5yw0zmfs02036iplq6cc1yb0"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring http-media JuicyPixels servant - ]; - executableHaskellDepends = [ - base JuicyPixels servant servant-server wai warp - ]; - description = "Servant support for JuicyPixels"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "servant-JuicyPixels_0_3_0_4" = callPackage - ({ mkDerivation, base, bytestring, http-media, JuicyPixels, servant - , servant-server, wai, warp - }: - mkDerivation { - pname = "servant-JuicyPixels"; version = "0.3.0.4"; sha256 = "10crrcrxap7751wifbc28kr1kv0rjvrx3wlnkajgv3xpr05g00kv"; isLibrary = true; @@ -182214,7 +183138,6 @@ self: { ]; description = "Servant support for JuicyPixels"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "servant-aeson-specs" = callPackage @@ -182813,6 +183736,7 @@ self: { ]; description = "Servant Dhall content-type"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "servant-docs" = callPackage @@ -183798,32 +184722,6 @@ self: { }: mkDerivation { pname = "servant-static-th"; - version = "0.2.0.1"; - sha256 = "1np3sh8jcil63kd56smlkcxqg25zsn01s4dx0d1i4cmc610nb33l"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base blaze-html bytestring containers directory filepath http-media - semigroups servant servant-blaze servant-server template-haskell - text - ]; - testHaskellDepends = [ - base blaze-html bytestring directory doctest filepath Glob - hspec-wai servant servant-blaze servant-server tasty tasty-hspec - tasty-hunit wai - ]; - description = "Embed a directory of static files in your Servant server"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "servant-static-th_0_2_2_0" = callPackage - ({ mkDerivation, base, blaze-html, bytestring, containers - , directory, doctest, filepath, Glob, hspec-wai, http-media - , semigroups, servant, servant-blaze, servant-server, tasty - , tasty-hspec, tasty-hunit, template-haskell, text, wai - }: - mkDerivation { - pname = "servant-static-th"; version = "0.2.2.0"; sha256 = "06vl8a9h5gzmfazj390fmxp6p4bwfdszqjdwnpivv03m80lh3v2v"; isLibrary = true; @@ -183840,15 +184738,14 @@ self: { ]; description = "Embed a directory of static files in your Servant server"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "servant-streaming" = callPackage ({ mkDerivation, base, hspec, http-types, QuickCheck, servant }: mkDerivation { pname = "servant-streaming"; - version = "0.2.0.0"; - sha256 = "10cs6yrzy75w8zvjddqw0gcnqmwmk28112vbj9dwpg2qgh1s1194"; + version = "0.3.0.0"; + sha256 = "0k2sgh7qhp54050k6xlz4zi5jf29xnar2iv02f4rg1k5fxjlh3cq"; libraryHaskellDepends = [ base http-types servant ]; testHaskellDepends = [ base hspec http-types QuickCheck servant ]; description = "Servant combinators for the 'streaming' package"; @@ -183863,8 +184760,8 @@ self: { }: mkDerivation { pname = "servant-streaming-client"; - version = "0.2.0.0"; - sha256 = "056k8ysani675ab9x7ls6fns55frw26krcdrsznwc2808bi71p3x"; + version = "0.3.0.0"; + sha256 = "1h3haws61m064zziyzn03n0450swffmr46gsv9k88lrpz8lv5qj2"; libraryHaskellDepends = [ base bytestring http-media http-types resourcet servant servant-client-core servant-streaming streaming @@ -183885,8 +184782,8 @@ self: { }: mkDerivation { pname = "servant-streaming-docs"; - version = "0.2.0.0"; - sha256 = "0a5f5bz4qgk9a7bfgym950mcqxx83629j3x35rmp7faxd50jx055"; + version = "0.3.0.0"; + sha256 = "0jy0na8cavym2vsy1a059n0yjzfb5a0xylyzxpz0i5apafv1xvlz"; libraryHaskellDepends = [ base lens servant servant-docs servant-streaming ]; @@ -183902,8 +184799,8 @@ self: { }: mkDerivation { pname = "servant-streaming-server"; - version = "0.2.0.0"; - sha256 = "1a95hzvcki51109hd563kk23zgv909pwdvpdxah3asbv78b9i7id"; + version = "0.3.0.0"; + sha256 = "0lsh3x6hkbk7p095pkp7ld0m54xlkw0101x6nrxhjvhmw13aiq66"; libraryHaskellDepends = [ base bytestring http-media http-types resourcet servant servant-server servant-streaming streaming streaming-wai wai @@ -184267,8 +185164,8 @@ self: { }: mkDerivation { pname = "serverless-haskell"; - version = "0.6.0"; - sha256 = "0vwvgncayp0wknycg1d3w2dx5nhr4dik9vkcc4mcxw9p479llx5r"; + version = "0.6.1"; + sha256 = "1amv4plafwjnw2nd4hc429zpybvd70c4c76hvnmkwc4d13z3rh3b"; libraryHaskellDepends = [ aeson aeson-casing aeson-extra amazonka-core amazonka-kinesis amazonka-s3 base bytestring case-insensitive http-types iproute @@ -185182,6 +186079,7 @@ self: { ]; description = "Shake library for use with cabal"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "shake-cabal-build" = callPackage @@ -185988,18 +186886,20 @@ self: { "shift" = callPackage ({ mkDerivation, ansi-terminal, base, binary, bytestring - , composition, data-default, lens, optparse-applicative - , system-fileio, system-filepath, text, turtle + , composition-prelude, data-default, microlens + , optparse-applicative, system-fileio, system-filepath, text + , turtle }: mkDerivation { pname = "shift"; - version = "0.2.0.1"; - sha256 = "162b862m73dwdw3ci1k8ihwb2kng7nrn679zk01v5cq3s3qkbqgx"; + version = "0.2.0.2"; + sha256 = "0n9iik288h93dfxrzv5wfalv5c8g0kz3wzg731yqcpad4csw9cq5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - ansi-terminal base binary bytestring composition data-default lens - optparse-applicative system-fileio system-filepath text turtle + ansi-terminal base binary bytestring composition-prelude + data-default microlens optparse-applicative system-fileio + system-filepath text turtle ]; executableHaskellDepends = [ base ]; description = "A tool to quickly switch between directories"; @@ -187334,8 +188234,8 @@ self: { }: mkDerivation { pname = "simple-vec3"; - version = "0.4.0.6"; - sha256 = "1ijwh5xsqiaykm8y39jz4vnzvcbdq2za77ahkb6l7nqfc5ryv5z1"; + version = "0.4.0.7"; + sha256 = "1snhvy9nlwi6ka6lj6qhc3p9wz9q88mj9yr80lir7z0i1qy0yvar"; libraryHaskellDepends = [ base QuickCheck vector ]; testHaskellDepends = [ base doctest doctest-driver-gen tasty tasty-quickcheck @@ -188351,30 +189251,6 @@ self: { }: mkDerivation { pname = "slack-web"; - version = "0.2.0.5"; - sha256 = "1bplhq3qd4hssp6s6710fgxdbmwm0gknsgs0p4n3hz3w30rp6b56"; - libraryHaskellDepends = [ - aeson base containers errors http-api-data http-client - http-client-tls megaparsec mtl servant servant-client - servant-client-core text time transformers - ]; - testHaskellDepends = [ - aeson base containers errors hspec http-api-data megaparsec text - time - ]; - description = "Bindings for the Slack web API"; - license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "slack-web_0_2_0_6" = callPackage - ({ mkDerivation, aeson, base, containers, errors, hspec - , http-api-data, http-client, http-client-tls, megaparsec, mtl - , servant, servant-client, servant-client-core, text, time - , transformers - }: - mkDerivation { - pname = "slack-web"; version = "0.2.0.6"; sha256 = "1rydw71na7qninys7nqyn36mld5a5csvlsf01yzansnn2gvpdh2a"; libraryHaskellDepends = [ @@ -191711,6 +192587,29 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "spatial-rotations" = callPackage + ({ mkDerivation, base, containers, linear, manifolds + , manifolds-core, pragmatic-show, tasty, tasty-hunit + , tasty-quickcheck, vector-space + }: + mkDerivation { + pname = "spatial-rotations"; + version = "0.1.0.0"; + sha256 = "1315zk74kznhizi7wvd48n0j06d1ja3z16240hv16cbsh14lsxhm"; + revision = "1"; + editedCabalFile = "1qsnkxg0r68c675fsvg2wsqkkimlzx9zw92zwmpv69ww42qxrrhy"; + libraryHaskellDepends = [ + base linear manifolds-core vector-space + ]; + testHaskellDepends = [ + base containers manifolds pragmatic-show tasty tasty-hunit + tasty-quickcheck vector-space + ]; + description = "Rotate about any suitable axis"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "spawn" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -194548,26 +195447,27 @@ self: { "staversion" = callPackage ({ mkDerivation, aeson, ansi-wl-pprint, base, bytestring, Cabal - , containers, directory, filepath, hspec, http-client + , containers, directory, filepath, heredoc, hspec, http-client , http-client-tls, http-types, megaparsec, optparse-applicative - , pretty, QuickCheck, semigroups, text, transformers + , pretty, process, QuickCheck, semigroups, text, transformers , transformers-compat, unordered-containers, yaml }: mkDerivation { pname = "staversion"; - version = "0.2.1.4"; - sha256 = "1lhj8cbn8x1dxd9pv0sr298i304vaj4zdpasz1r9avpyxwcq6shc"; + version = "0.2.2.0"; + sha256 = "1pqb2sqhcjpzkxm45gjw4ih4nzky2l4kin80mwzcgd6q3y0n775x"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson ansi-wl-pprint base bytestring Cabal containers directory filepath http-client http-client-tls http-types megaparsec - optparse-applicative pretty semigroups text transformers + optparse-applicative pretty process semigroups text transformers transformers-compat unordered-containers yaml ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ - base bytestring Cabal filepath hspec QuickCheck semigroups text + base bytestring Cabal filepath heredoc hspec QuickCheck semigroups + text ]; description = "What version is the package X in stackage lts-Y.ZZ?"; license = stdenv.lib.licenses.bsd3; @@ -196905,8 +197805,8 @@ self: { pname = "structs"; version = "0.1.1"; sha256 = "0hdajhvd6i81dchdyd42fa17pm53jd7g3irqjfardbbmjx0sqq6z"; - revision = "1"; - editedCabalFile = "16ws2j3bhwawf6z1ipraiz73yvg65dg5l7hvj1lgbrqvn5lqizj3"; + revision = "2"; + editedCabalFile = "1v9gmnj17cm4p491rizvw9xdj255lk1y24gz6s8bqcz56sdb4d4s"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base deepseq ghc-prim primitive template-haskell @@ -198160,6 +199060,7 @@ self: { ]; description = "Auto-generated openapi-petstore API Client"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "swagger-test" = callPackage @@ -199911,6 +200812,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "tagged_0_8_6" = callPackage + ({ mkDerivation, base, deepseq, template-haskell, transformers }: + mkDerivation { + pname = "tagged"; + version = "0.8.6"; + sha256 = "1pciqzxf9ncv954v4r527xkxkn7r5hcr13mfw5dg1xjci3qdw5md"; + libraryHaskellDepends = [ + base deepseq template-haskell transformers + ]; + description = "Haskell 98 phantom types to avoid unsafely passing dummy arguments"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "tagged-binary" = callPackage ({ mkDerivation, base, base-compat, binary, bytestring, pureMD5 }: mkDerivation { @@ -200787,12 +201702,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "tasty-dejafu_1_2_0_6" = callPackage + "tasty-dejafu_1_2_0_7" = callPackage ({ mkDerivation, base, dejafu, random, tagged, tasty }: mkDerivation { pname = "tasty-dejafu"; - version = "1.2.0.6"; - sha256 = "193bf26vccbs0wpdhcqi0pi8mw806acrk1hpr2a7jl70jfwxhp98"; + version = "1.2.0.7"; + sha256 = "1wg6baw9rll5wajbr10av664i0dswy72flfha320137s6s3by2wc"; libraryHaskellDepends = [ base dejafu random tagged tasty ]; description = "Deja Fu support for the Tasty test framework"; license = stdenv.lib.licenses.mit; @@ -200947,6 +201862,7 @@ self: { ]; description = "Coverage tracking for Hedgehog Property-Based Testing via Tasty"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "tasty-hspec" = callPackage @@ -200955,24 +201871,6 @@ self: { }: mkDerivation { pname = "tasty-hspec"; - version = "1.1.4"; - sha256 = "17f4rcga0qnynf1h047chwm5nicmik79lw04kiwpw48ahwc0zkp3"; - revision = "2"; - editedCabalFile = "1ijz75l5jhyxjk6hjrhbsw4470dxfdnwdwn9q3akxbmk095hpzjl"; - libraryHaskellDepends = [ - base hspec hspec-core QuickCheck tasty tasty-quickcheck - tasty-smallcheck - ]; - description = "Hspec support for the Tasty test framework"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "tasty-hspec_1_1_5" = callPackage - ({ mkDerivation, base, hspec, hspec-core, QuickCheck, tasty - , tasty-quickcheck, tasty-smallcheck - }: - mkDerivation { - pname = "tasty-hspec"; version = "1.1.5"; sha256 = "0m0ip2l4rg4pnrvk3mjxkbq2l683psv1x3v9l4rglk2k3pvxq36v"; revision = "1"; @@ -200983,7 +201881,6 @@ self: { ]; description = "Hspec support for the Tasty test framework"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "tasty-html" = callPackage @@ -202891,6 +203788,7 @@ self: { ]; description = "Testing framework"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "test-pkg" = callPackage @@ -203935,7 +204833,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "text-show_3_7_3" = callPackage + "text-show_3_7_4" = callPackage ({ mkDerivation, array, base, base-compat-batteries, base-orphans , bifunctors, bytestring, bytestring-builder, containers , contravariant, criterion, deepseq, deriving-compat @@ -203946,8 +204844,8 @@ self: { }: mkDerivation { pname = "text-show"; - version = "3.7.3"; - sha256 = "1d8wmdndl8qsz90fb67xxbrprlmmp47p4f3ik6psp5m6r0cdvpzg"; + version = "3.7.4"; + sha256 = "068yp74k4ybhvycivnr7x238dl1qdnkjdzf25pcz127294rn9yry"; libraryHaskellDepends = [ array base base-compat-batteries bifunctors bytestring bytestring-builder containers contravariant generic-deriving @@ -203956,20 +204854,13 @@ self: { transformers-compat void ]; testHaskellDepends = [ - array base base-compat-batteries base-orphans bifunctors bytestring - bytestring-builder containers contravariant deriving-compat - generic-deriving ghc-boot-th ghc-prim hspec integer-gmp nats - QuickCheck quickcheck-instances semigroups tagged template-haskell - text th-lift transformers transformers-compat void + array base base-compat-batteries base-orphans bytestring + bytestring-builder deriving-compat generic-deriving ghc-prim hspec + nats QuickCheck quickcheck-instances semigroups tagged + template-haskell text transformers transformers-compat ]; testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ - array base base-compat-batteries bifunctors bytestring - bytestring-builder containers contravariant criterion deepseq - generic-deriving ghc-boot-th ghc-prim integer-gmp nats semigroups - tagged template-haskell text th-lift transformers - transformers-compat void - ]; + benchmarkHaskellDepends = [ base criterion deepseq ghc-prim text ]; description = "Efficient conversion of values into Text"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -204008,36 +204899,33 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "text-show-instances_3_6_4" = callPackage + "text-show-instances_3_6_5" = callPackage ({ mkDerivation, base, base-compat-batteries, bifunctors, binary - , bytestring, containers, directory, generic-deriving, ghc-boot-th - , ghc-prim, haskeline, hoopl, hpc, hspec, hspec-discover - , old-locale, old-time, pretty, process, QuickCheck - , quickcheck-instances, random, semigroups, tagged - , template-haskell, terminfo, text, text-show, th-orphans, time - , transformers, transformers-compat, unix, unordered-containers - , vector, xhtml + , containers, directory, generic-deriving, ghc-boot-th, ghc-prim + , haskeline, hoopl, hpc, hspec, hspec-discover, old-locale + , old-time, pretty, QuickCheck, quickcheck-instances, random + , semigroups, tagged, template-haskell, terminfo, text, text-show + , th-orphans, time, transformers, transformers-compat, unix + , unordered-containers, vector, xhtml }: mkDerivation { pname = "text-show-instances"; - version = "3.6.4"; - sha256 = "1a2aacy6l58b49868hhvqws4900rq9dpb8zwkb5cz45gsb7zpgjf"; - revision = "1"; - editedCabalFile = "0fb704bm4n99vv7cblzsg9l8i6gy2ybppp2xagh4mcrwn5g776l8"; + version = "3.6.5"; + sha256 = "0hljqh31m3199w8ppcihggcya8cj4zmrav5z6fvcn6xn2hzz1cql"; libraryHaskellDepends = [ - base base-compat-batteries bifunctors binary bytestring containers - directory ghc-boot-th haskeline hoopl hpc old-locale old-time - pretty process random semigroups tagged template-haskell terminfo - text text-show time transformers transformers-compat unix - unordered-containers vector xhtml + base base-compat-batteries bifunctors binary containers directory + ghc-boot-th haskeline hoopl hpc old-locale old-time pretty random + semigroups tagged template-haskell terminfo text text-show time + transformers transformers-compat unix unordered-containers vector + xhtml ]; testHaskellDepends = [ - base base-compat-batteries bifunctors binary bytestring containers - directory generic-deriving ghc-boot-th ghc-prim haskeline hoopl hpc - hspec old-locale old-time pretty process QuickCheck - quickcheck-instances random semigroups tagged template-haskell - terminfo text text-show th-orphans time transformers - transformers-compat unix unordered-containers vector xhtml + base base-compat-batteries bifunctors binary containers directory + generic-deriving ghc-boot-th ghc-prim haskeline hoopl hpc hspec + old-locale old-time pretty QuickCheck quickcheck-instances random + tagged template-haskell terminfo text-show th-orphans time + transformers transformers-compat unix unordered-containers vector + xhtml ]; testToolDepends = [ hspec-discover ]; description = "Additional instances for text-show"; @@ -204361,31 +205249,16 @@ self: { ({ mkDerivation, base, containers, ghc-prim, template-haskell }: mkDerivation { pname = "th-abstraction"; - version = "0.2.7.0"; - sha256 = "1233x853gcc18xm0d8ysf7rlkg9aphy2j6hn78yxchalglfwjixf"; - revision = "1"; - editedCabalFile = "1fafzr80vbnamqq72rwnhk1ih3iyxzb8j2xfdgn691irv4fv6839"; - libraryHaskellDepends = [ - base containers ghc-prim template-haskell - ]; - testHaskellDepends = [ base containers template-haskell ]; - description = "Nicer interface for reified information about data types"; - license = stdenv.lib.licenses.isc; - }) {}; - - "th-abstraction_0_2_8_0" = callPackage - ({ mkDerivation, base, containers, ghc-prim, template-haskell }: - mkDerivation { - pname = "th-abstraction"; version = "0.2.8.0"; sha256 = "0n17w4q2ykd0nica4sck2wng6md56rfad8x0icl0l8vnzb9nn4ya"; + revision = "1"; + editedCabalFile = "0yr4bj9ypbls0ysmwrgn2nsjb1xpsb12bjaiwbkzp6nf3kljwnnv"; libraryHaskellDepends = [ base containers ghc-prim template-haskell ]; testHaskellDepends = [ base containers template-haskell ]; description = "Nicer interface for reified information about data types"; license = stdenv.lib.licenses.isc; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "th-alpha" = callPackage @@ -204724,10 +205597,8 @@ self: { }: mkDerivation { pname = "th-orphans"; - version = "0.13.5"; - sha256 = "1b9599vyn0wjwbq7b7n0w25s3wbihdxr958hscfpwc8lg55lsr4m"; - revision = "1"; - editedCabalFile = "1rgsrnh0qvlriz0c2c3q8wbb3ykby8d3lli0j553ml3n1sn9k4zv"; + version = "0.13.6"; + sha256 = "0sfl3pn9kq9da3ji3lsgzgzy82vz6yvsg80dmakc1jvk7awycibp"; libraryHaskellDepends = [ base mtl template-haskell th-lift th-lift-instances th-reify-many ]; @@ -205167,6 +206038,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "thread-local-storage_0_2" = callPackage + ({ mkDerivation, atomic-primops, base, containers, criterion }: + mkDerivation { + pname = "thread-local-storage"; + version = "0.2"; + sha256 = "152j8r7rfixkjrh1ynv2s0586bl65cpy47frhsikd40q64bf0j6n"; + libraryHaskellDepends = [ base containers ]; + testHaskellDepends = [ atomic-primops base ]; + benchmarkHaskellDepends = [ atomic-primops base criterion ]; + description = "Several options for thread-local-storage (TLS) in Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "threadPool" = callPackage ({ mkDerivation, base, process }: mkDerivation { @@ -206053,8 +206938,8 @@ self: { ({ mkDerivation, base, intervals, time }: mkDerivation { pname = "time-patterns"; - version = "0.1.4.2"; - sha256 = "1xh50plr6dk21cpc3mqcq00xakhm7zvnsgwbi0hyk1prgr408asl"; + version = "0.1.4.3"; + sha256 = "0qyg2y41c0bn296zyxfhjjjm0bxn4vmns242vl90j0b0siz69qr0"; libraryHaskellDepends = [ base intervals time ]; description = "Patterns for recurring events"; license = stdenv.lib.licenses.bsd3; @@ -208958,6 +209843,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "trifecta_2" = callPackage + ({ mkDerivation, ansi-terminal, ansi-wl-pprint, array, base + , blaze-builder, blaze-html, blaze-markup, bytestring, Cabal + , cabal-doctest, charset, comonad, containers, deepseq, doctest + , fingertree, ghc-prim, hashable, lens, mtl, parsers, profunctors + , QuickCheck, reducers, semigroups, transformers + , unordered-containers, utf8-string + }: + mkDerivation { + pname = "trifecta"; + version = "2"; + sha256 = "0hznd8i65s81xy13i2qc7cvipw3lfb2yhkv53apbdsh6sbljz5sk"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + ansi-terminal ansi-wl-pprint array base blaze-builder blaze-html + blaze-markup bytestring charset comonad containers deepseq + fingertree ghc-prim hashable lens mtl parsers profunctors reducers + semigroups transformers unordered-containers utf8-string + ]; + testHaskellDepends = [ base doctest parsers QuickCheck ]; + description = "A modern parser combinator library with convenient diagnostics"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "trigger" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, clock, directory , exceptions, filepath, formatting, fsnotify, Glob, hspec, process @@ -209706,6 +210616,30 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "turtle_1_5_10" = callPackage + ({ mkDerivation, ansi-wl-pprint, async, base, bytestring, clock + , containers, criterion, directory, doctest, exceptions, foldl + , hostname, managed, optional-args, optparse-applicative, process + , semigroups, stm, system-fileio, system-filepath, temporary, text + , time, transformers, unix, unix-compat + }: + mkDerivation { + pname = "turtle"; + version = "1.5.10"; + sha256 = "0c2bfwfj1pf3s4kjr4k9g36166pj9wfpp2rrs5blzh77hjmak4rs"; + libraryHaskellDepends = [ + ansi-wl-pprint async base bytestring clock containers directory + exceptions foldl hostname managed optional-args + optparse-applicative process semigroups stm system-fileio + system-filepath temporary text time transformers unix unix-compat + ]; + testHaskellDepends = [ base doctest system-filepath temporary ]; + benchmarkHaskellDepends = [ base criterion text ]; + description = "Shell programming, Haskell-style"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "turtle-options" = callPackage ({ mkDerivation, base, HUnit, optional-args, parsec, text, turtle }: @@ -209782,20 +210716,20 @@ self: { ({ mkDerivation, aeson, ansi-wl-pprint, authenticate-oauth, base , bytestring, composition-prelude, containers, criterion , data-default, directory, extra, hspec, htoml-megaparsec - , http-client, http-client-tls, http-types, lens, megaparsec + , http-client, http-client-tls, http-types, megaparsec, microlens , optparse-applicative, split, text, unordered-containers }: mkDerivation { pname = "tweet-hs"; - version = "1.0.1.40"; - sha256 = "0zbhnx2hl6cgfdzgd3iwmlzkf4kgdz87m0ghmq2irdblfiz5kspr"; + version = "1.0.1.41"; + sha256 = "1ybrsnppy7lnj5z2f8m38cd6ix89j6dlvgc2icl7lj3w14g6cfxm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson ansi-wl-pprint authenticate-oauth base bytestring composition-prelude containers data-default extra htoml-megaparsec - http-client http-client-tls http-types lens megaparsec split text - unordered-containers + http-client http-client-tls http-types megaparsec microlens split + text unordered-containers ]; executableHaskellDepends = [ base bytestring directory optparse-applicative @@ -213285,8 +214219,8 @@ self: { }: mkDerivation { pname = "unordered-intmap"; - version = "0.1.0.0"; - sha256 = "0b4azafy32jwq3s9dy52l9lqkpy7hj4jqin3mj1hnh1qrlnm9jwr"; + version = "0.1.1"; + sha256 = "1vvn510v4gy70lk2bkx45bh7hk0kfdn62j3rp913j57d4c6azynq"; libraryHaskellDepends = [ base deepseq primitive ]; testHaskellDepends = [ base containers deepseq primitive QuickCheck tasty tasty-quickcheck @@ -214427,6 +215361,7 @@ self: { executableHaskellDepends = [ base uu-cco uuagc uuagc-cabal ]; description = "Utilities for compiler construction: example programs"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "uu-cco-hut-parsing" = callPackage @@ -215021,12 +215956,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "validity_0_6_0_0" = callPackage + "validity_0_7_0_0" = callPackage ({ mkDerivation, base, hspec }: mkDerivation { pname = "validity"; - version = "0.6.0.0"; - sha256 = "1ba7dvxz2x3ng4k221xawp0bz4gk4lz5gklklgypavp1fdrhf27q"; + version = "0.7.0.0"; + sha256 = "0xribw98amafihw87ddajk6vlirp7w9b26lrnjgq7jfm4710j95f"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec ]; description = "Validity typeclass"; @@ -215050,14 +215985,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "validity-aeson_0_2_0_1" = callPackage + "validity-aeson_0_2_0_2" = callPackage ({ mkDerivation, aeson, base, validity, validity-scientific , validity-text, validity-unordered-containers, validity-vector }: mkDerivation { pname = "validity-aeson"; - version = "0.2.0.1"; - sha256 = "001smpck69y4bmrzrykjvjnrwjllny83kh1l1c2fyy4zzjw14lpy"; + version = "0.2.0.2"; + sha256 = "010x1sprssj282gv85n63955fmn6ngz6h6qii3174vrxrwlkvh7s"; libraryHaskellDepends = [ aeson base validity validity-scientific validity-text validity-unordered-containers validity-vector @@ -215078,12 +216013,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "validity-bytestring_0_3_0_1" = callPackage + "validity-bytestring_0_3_0_2" = callPackage ({ mkDerivation, base, bytestring, validity }: mkDerivation { pname = "validity-bytestring"; - version = "0.3.0.1"; - sha256 = "1jp1d72qr9axngzgq18k0kvvmc2x8yndpnh9g52zcmm66nkhn2d9"; + version = "0.3.0.2"; + sha256 = "0bwixp9fcblqy6b8kxvzg9l2i9lksn9g71243m2zcan1kh7a1qb2"; libraryHaskellDepends = [ base bytestring validity ]; description = "Validity instances for bytestring"; license = stdenv.lib.licenses.mit; @@ -215101,12 +216036,12 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "validity-containers_0_3_0_1" = callPackage + "validity-containers_0_3_1_0" = callPackage ({ mkDerivation, base, containers, validity }: mkDerivation { pname = "validity-containers"; - version = "0.3.0.1"; - sha256 = "0ksqyr335f0d686j0slpzyph7663xiyv86rblgiaqjjwbj9y1jqf"; + version = "0.3.1.0"; + sha256 = "1ci07x5k9hjpn23pbp4bc0zvml5xbpppsmcxr1qfcg0g4036q29r"; libraryHaskellDepends = [ base containers validity ]; description = "Validity instances for containers"; license = stdenv.lib.licenses.mit; @@ -218485,6 +219420,8 @@ self: { pname = "wai-middleware-static"; version = "0.8.2"; sha256 = "1z5yapcf8j9w71f2na30snmalsajlyi8an2f9qrjdmajabyykr0b"; + revision = "1"; + editedCabalFile = "0n7i81jrjsrav8bpg31avrd18vh95l5z6bfj4fqkrdj4h1v6armi"; libraryHaskellDepends = [ base bytestring containers cryptonite directory expiring-cache-map filepath http-types memory mime-types mtl old-locale semigroups @@ -218700,8 +219637,8 @@ self: { }: mkDerivation { pname = "wai-routes"; - version = "0.10.2"; - sha256 = "0nhimzkws5v7qpfv305lp41qm61q0xxny5vvs0d26jarnmar9crq"; + version = "0.10.3"; + sha256 = "0q7928i2y0j0z68qz1ixgzh3cx2rmyp44vpzc5jxqrrbfsb0z56k"; libraryHaskellDepends = [ aeson base blaze-builder bytestring case-insensitive containers cookie data-default-class filepath http-types mime-types @@ -219314,6 +220251,7 @@ self: { testToolDepends = [ alex happy ]; description = "WebAssembly Language Toolkit and Interpreter"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "watchdog" = callPackage @@ -220096,6 +221034,7 @@ self: { ]; description = "Bindings to the WebDriver API"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "webex-teams-api" = callPackage @@ -221806,9 +222745,12 @@ self: { ({ mkDerivation, base, containers, megaparsec, text }: mkDerivation { pname = "work-time"; - version = "0.1.1.0"; - sha256 = "02rrag1zi266spp6szlxsh23x55r669xz6h4rv7qymp5ww1dj0bf"; + version = "0.1.2.0"; + sha256 = "0vss3ik2q33nqiqy4d4gzyjfgr8grzgjx68lgi7wbwzgqmkk86bz"; + isLibrary = true; + isExecutable = true; libraryHaskellDepends = [ base containers megaparsec text ]; + executableHaskellDepends = [ base text ]; description = "A library for parsing a chat-based work hour reporting scheme"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -224765,6 +225707,27 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; + "xss-sanitize_0_3_6" = callPackage + ({ mkDerivation, attoparsec, base, containers, css-text, hspec + , HUnit, network-uri, tagsoup, text, utf8-string + }: + mkDerivation { + pname = "xss-sanitize"; + version = "0.3.6"; + sha256 = "1d72s3a6520iwwc1wbn9v2znqgbw6a5wwzb23iq8ny9ccnjyx1dk"; + libraryHaskellDepends = [ + attoparsec base containers css-text network-uri tagsoup text + utf8-string + ]; + testHaskellDepends = [ + attoparsec base containers css-text hspec HUnit network-uri tagsoup + text utf8-string + ]; + description = "sanitize untrusted HTML to prevent XSS attacks"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "xtc" = callPackage ({ mkDerivation, base, wx, wxcore }: mkDerivation { @@ -225187,36 +226150,8 @@ self: { }: mkDerivation { pname = "yaml"; - version = "0.8.30"; - sha256 = "11dyjqs1rzhpidzfqdw3lg8rsm32jhjph54kc68k4dwib6fnwnyi"; - configureFlags = [ "-fsystem-libyaml" ]; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson attoparsec base bytestring conduit containers directory - filepath resourcet scientific semigroups template-haskell text - transformers unordered-containers vector - ]; - libraryPkgconfigDepends = [ libyaml ]; - testHaskellDepends = [ - aeson base base-compat bytestring conduit directory hspec HUnit - mockery resourcet temporary text transformers unordered-containers - vector - ]; - description = "Support for parsing and rendering YAML documents"; - license = stdenv.lib.licenses.bsd3; - }) {inherit (pkgs) libyaml;}; - - "yaml_0_8_31" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring - , conduit, containers, directory, filepath, hspec, HUnit, libyaml - , mockery, resourcet, scientific, semigroups, template-haskell - , temporary, text, transformers, unordered-containers, vector - }: - mkDerivation { - pname = "yaml"; - version = "0.8.31"; - sha256 = "1a9b24czyrls3d7lgamm0cmrwkndr8ip3h6d338q79alhdz8ziqm"; + version = "0.8.31.1"; + sha256 = "0lwbdlz2r54nvdr5snmjp5lnkv6wwk118bhy13v1vjz62wclb88v"; configureFlags = [ "-fsystem-libyaml" ]; isLibrary = true; isExecutable = true; @@ -225233,7 +226168,6 @@ self: { ]; description = "Support for parsing and rendering YAML documents"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) libyaml;}; "yaml-combinators" = callPackage @@ -225292,8 +226226,8 @@ self: { }: mkDerivation { pname = "yaml-light-lens"; - version = "0.3.3.4"; - sha256 = "1vvwgb302w2nz05c97gzxkjx7m2lp25bpp3l16bzh92mjvqddpbd"; + version = "0.3.3.5"; + sha256 = "11q6g00qycpr29n1yxpsgpailzk216pr3cfjy7pyrlvfpl4wx24f"; libraryHaskellDepends = [ base bytestring bytestring-lexing containers lens yaml-light ]; @@ -225437,8 +226371,8 @@ self: { pname = "yampa-canvas"; version = "0.2.2"; sha256 = "0g1yvb6snnsbvy2f74lrlqff5zgnvfh2f6r8xdwxi61dk71qsz0n"; - revision = "4"; - editedCabalFile = "1bqjfmssgg0jd6j5x727clk6wawbbh0hq8v0qpj4d5bfv4931pkb"; + revision = "5"; + editedCabalFile = "18my271nsvb26sh5l45ng2zvwnm6fzw589cr9cipbpdaaqhyppfg"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base blank-canvas stm time Yampa ]; @@ -226347,15 +227281,16 @@ self: { }) {}; "yesod-colonnade" = callPackage - ({ mkDerivation, base, blaze-html, blaze-markup, colonnade, text - , yesod-core + ({ mkDerivation, base, blaze-html, blaze-markup, colonnade, conduit + , conduit-extra, text, yesod-core, yesod-elements }: mkDerivation { pname = "yesod-colonnade"; - version = "1.2.0"; - sha256 = "1xbcwaklbly80fimmbi04j9wpl06knjdf1zy0m8i8cb1xmd8nh0k"; + version = "1.3.0.1"; + sha256 = "1x5m3xv4jq2x49fnvxw3v8bvbsx4hdccykcn32fz3cwavp4p1q1p"; libraryHaskellDepends = [ - base blaze-html blaze-markup colonnade text yesod-core + base blaze-html blaze-markup colonnade conduit conduit-extra text + yesod-core yesod-elements ]; description = "Helper functions for using yesod with colonnade"; license = stdenv.lib.licenses.bsd3; @@ -226630,12 +227565,16 @@ self: { }) {}; "yesod-elements" = callPackage - ({ mkDerivation, base, blaze-html, yesod-core }: + ({ mkDerivation, base, blaze-html, blaze-markup, bytestring, text + , yesod-core + }: mkDerivation { pname = "yesod-elements"; - version = "1.0"; - sha256 = "0d0ihp0yk0b07v2ym6vvzj70pwh16ms6xyp7yan4dcavcy8cz86l"; - libraryHaskellDepends = [ base blaze-html yesod-core ]; + version = "1.1"; + sha256 = "0rxx3lxl55q0mxdzfixwy2d0cnzmfxx2zg24k6kdgghg0k77g3d3"; + libraryHaskellDepends = [ + base blaze-html blaze-markup bytestring text yesod-core + ]; description = "Non template haskell markup building function in the spirit of lucid"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -229360,31 +230299,6 @@ self: { "zip-archive" = callPackage ({ mkDerivation, array, base, binary, bytestring, Cabal, containers - , digest, directory, filepath, HUnit, mtl, old-time, pretty - , process, temporary, text, time, unix, unzip, zlib - }: - mkDerivation { - pname = "zip-archive"; - version = "0.3.2.5"; - sha256 = "14xkaj456zpxxbwd1h5prcxiiid42snli4mqm1052jp32c7xhf89"; - isLibrary = true; - isExecutable = true; - setupHaskellDepends = [ base Cabal ]; - libraryHaskellDepends = [ - array base binary bytestring containers digest directory filepath - mtl old-time pretty text time unix zlib - ]; - testHaskellDepends = [ - base bytestring directory filepath HUnit old-time process temporary - time unix - ]; - testToolDepends = [ unzip ]; - description = "Library for creating and modifying zip archives"; - license = stdenv.lib.licenses.bsd3; - }) {inherit (pkgs) unzip;}; - - "zip-archive_0_3_3" = callPackage - ({ mkDerivation, array, base, binary, bytestring, Cabal, containers , digest, directory, filepath, HUnit, mtl, pretty, process , temporary, text, time, unix, unzip, zlib }: @@ -229406,7 +230320,6 @@ self: { testToolDepends = [ unzip ]; description = "Library for creating and modifying zip archives"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) unzip;}; "zip-conduit" = callPackage @@ -229958,6 +230871,7 @@ self: { ]; description = "Creating and extracting arbitrary archives"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "zuramaru" = callPackage diff --git a/pkgs/development/idris-modules/default.nix b/pkgs/development/idris-modules/default.nix index 1dfa4e48899a..25f8dba00b02 100644 --- a/pkgs/development/idris-modules/default.nix +++ b/pkgs/development/idris-modules/default.nix @@ -31,10 +31,9 @@ # Idris wrapper with specified compiler and library paths, used to build packages - idris = - (pkgs.callPackage ./idris-wrapper.nix {}) - idris-no-deps - { path = [ pkgs.gcc ]; lib = [pkgs.gmp]; }; + idris = pkgs.callPackage ./idris-wrapper.nix { + inherit idris-no-deps; + }; # Utilities for building packages diff --git a/pkgs/development/idris-modules/idris-wrapper.nix b/pkgs/development/idris-modules/idris-wrapper.nix index fcd02c4da246..f395bcd95d7c 100644 --- a/pkgs/development/idris-modules/idris-wrapper.nix +++ b/pkgs/development/idris-modules/idris-wrapper.nix @@ -1,14 +1,12 @@ -{ symlinkJoin, makeWrapper, stdenv }: idris: { path, lib }: +{ lib, symlinkJoin, makeWrapper, idris-no-deps, gcc, gmp }: symlinkJoin { - name = idris.name; - src = idris.src; - paths = [ idris ]; + inherit (idris-no-deps) name src meta; + paths = [ idris-no-deps ]; buildInputs = [ makeWrapper ]; - meta.platforms = idris.meta.platforms; postBuild = '' wrapProgram $out/bin/idris \ - --suffix PATH : ${ stdenv.lib.makeBinPath path } \ - --suffix LIBRARY_PATH : ${stdenv.lib.makeLibraryPath lib} - ''; - } + --run 'export IDRIS_CC=''${IDRIS_CC:-${lib.getBin gcc}/bin/gcc}' \ + --suffix LIBRARY_PATH : ${lib.makeLibraryPath [ gmp ]} + ''; +} diff --git a/pkgs/development/interpreters/gauche/default.nix b/pkgs/development/interpreters/gauche/default.nix index c13a26204e26..2478493d41d7 100644 --- a/pkgs/development/interpreters/gauche/default.nix +++ b/pkgs/development/interpreters/gauche/default.nix @@ -1,23 +1,29 @@ -{ stdenv, fetchurl, pkgconfig, texinfo, libiconv, gdbm, openssl, zlib }: +{ stdenv, fetchurl, pkgconfig, texinfo, libiconv, gdbm, openssl, zlib +, mbedtls, cacert +}: stdenv.mkDerivation rec { name = "gauche-${version}"; - version = "0.9.5"; + version = "0.9.6"; src = fetchurl { url = "mirror://sourceforge/gauche/Gauche-${version}.tgz"; - sha256 = "0g77nik15whm5frxb7l0pwzd95qlq949dym5pn5p04p17lhm72jc"; + sha256 = "1bwwwvyxsrp2a4cfib6hn0hcgwzmp2znylm088w09f331miji2fd"; }; nativeBuildInputs = [ pkgconfig texinfo ]; - buildInputs = [ libiconv gdbm openssl zlib ]; + buildInputs = [ libiconv gdbm openssl zlib mbedtls cacert ]; + + postPatch = '' + patchShebangs . + ''; configureFlags = [ - "--enable-multibyte=utf-8" "--with-iconv=${libiconv}" "--with-dbm=gdbm" "--with-zlib=${zlib}" + "--with-ca-bundle=$SSL_CERT_FILE" # TODO: Enable slib # Current slib in nixpkgs is specialized to Guile # "--with-slib=${slibGuile}/lib/slib" diff --git a/pkgs/development/interpreters/lua-5/5.3.nix b/pkgs/development/interpreters/lua-5/5.3.nix index 7f0703c62884..5a4893db0637 100644 --- a/pkgs/development/interpreters/lua-5/5.3.nix +++ b/pkgs/development/interpreters/lua-5/5.3.nix @@ -53,6 +53,7 @@ stdenv.mkDerivation rec { Libs: -L$out/lib -llua -lm Cflags: -I$out/include EOF + ln -s "$out/lib/pkgconfig/lua.pc" "$out/lib/pkgconfig/lua${luaversion}.pc" ''; meta = { diff --git a/pkgs/development/interpreters/python/cpython/2.7/default.nix b/pkgs/development/interpreters/python/cpython/2.7/default.nix index 8dd4d9ad4fa2..cd1a0fc6e18f 100644 --- a/pkgs/development/interpreters/python/cpython/2.7/default.nix +++ b/pkgs/development/interpreters/python/cpython/2.7/default.nix @@ -73,7 +73,7 @@ let # https://github.com/python/cpython/pull/6118 (fetchpatch { name = "type_getattro.patch"; - url = "https://github.com/python/cpython/pull/6118/commits/8c6da2d7e7e719c40fb539b7f7cb7583cccc5527.patch"; + url = "file://${./type_getattro.patch}"; sha256 = "11v9yx20hs3jmw0wggzvmw39qs4mxay4kb8iq2qjydwy9ya61nrd"; }) ] ++ optionals (x11Support && stdenv.isDarwin) [ diff --git a/pkgs/development/interpreters/python/cpython/2.7/type_getattro.patch b/pkgs/development/interpreters/python/cpython/2.7/type_getattro.patch new file mode 100644 index 000000000000..c69c86b642b4 --- /dev/null +++ b/pkgs/development/interpreters/python/cpython/2.7/type_getattro.patch @@ -0,0 +1,62 @@ +--- a/Objects/typeobject.c ++++ b/Objects/typeobject.c +@@ -3137,6 +3137,7 @@ + PyTypeObject *metatype = Py_TYPE(type); + PyObject *meta_attribute, *attribute; + descrgetfunc meta_get; ++ PyObject* res; + + if (!PyUnicode_Check(name)) { + PyErr_Format(PyExc_TypeError, +@@ -3158,6 +3159,7 @@ + meta_attribute = _PyType_Lookup(metatype, name); + + if (meta_attribute != NULL) { ++ Py_INCREF(meta_attribute); + meta_get = Py_TYPE(meta_attribute)->tp_descr_get; + + if (meta_get != NULL && PyDescr_IsData(meta_attribute)) { +@@ -3165,10 +3167,11 @@ + * writes. Assume the attribute is not overridden in + * type's tp_dict (and bases): call the descriptor now. + */ +- return meta_get(meta_attribute, (PyObject *)type, +- (PyObject *)metatype); ++ res = meta_get(meta_attribute, (PyObject *)type, ++ (PyObject *)metatype); ++ Py_DECREF(meta_attribute); ++ return res; + } +- Py_INCREF(meta_attribute); + } + + /* No data descriptor found on metatype. Look in tp_dict of this +@@ -3176,6 +3179,7 @@ + attribute = _PyType_Lookup(type, name); + if (attribute != NULL) { + /* Implement descriptor functionality, if any */ ++ Py_INCREF(attribute); + descrgetfunc local_get = Py_TYPE(attribute)->tp_descr_get; + + Py_XDECREF(meta_attribute); +@@ -3183,11 +3187,12 @@ + if (local_get != NULL) { + /* NULL 2nd argument indicates the descriptor was + * found on the target object itself (or a base) */ +- return local_get(attribute, (PyObject *)NULL, +- (PyObject *)type); ++ res = local_get(attribute, (PyObject *)NULL, ++ (PyObject *)type); ++ Py_DECREF(attribute); ++ return res; + } + +- Py_INCREF(attribute); + return attribute; + } + +--- /dev/null ++++ b/Misc/NEWS.d/next/Core and Builtins/2018-03-14-21-42-17.bpo-25750.lxgkQz.rst +@@ -0,0 +1,2 @@ ++Fix rare Python crash due to bad refcounting in ``type_getattro()`` if a ++descriptor deletes itself from the class. diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix index 5e01a83b7c0c..7d8f5b2caee6 100644 --- a/pkgs/development/libraries/SDL2/default.nix +++ b/pkgs/development/libraries/SDL2/default.nix @@ -1,14 +1,14 @@ -{ stdenv, lib, fetchurl, pkgconfig, audiofile +{ stdenv, lib, fetchurl, pkgconfig, pruneLibtoolFiles , openglSupport ? false, libGL , alsaSupport ? true, alsaLib -, x11Support ? true, libICE, libXi, libXScrnSaver, libXcursor, libXinerama, libXext, libXxf86vm, libXrandr +, x11Support ? true, libX11, xproto, libICE, libXi, libXScrnSaver, libXcursor, libXinerama, libXext, libXxf86vm, libXrandr , waylandSupport ? true, wayland, wayland-protocols, libxkbcommon , dbusSupport ? false, dbus , udevSupport ? false, udev , ibusSupport ? false, ibus , pulseaudioSupport ? true, libpulseaudio , AudioUnit, Cocoa, CoreAudio, CoreServices, ForceFeedback, OpenGL -, libiconv +, audiofile, libiconv }: # NOTE: When editing this expression see if the same change applies to @@ -33,18 +33,26 @@ stdenv.mkDerivation rec { patches = [ ./find-headers.patch ]; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ pkgconfig pruneLibtoolFiles ]; - propagatedBuildInputs = [ libiconv ] + propagatedBuildInputs = dlopenPropagatedBuildInputs; + + dlopenPropagatedBuildInputs = [ ] + # Propagated for #include <GLES/gl.h> in SDL_opengles.h. + ++ optional openglSupport libGL + # Propagated for #include <X11/Xlib.h> and <X11/Xatom.h> in SDL_syswm.h. + ++ optionals x11Support [ libX11 xproto ]; + + dlopenBuildInputs = [ ] + ++ optional alsaSupport alsaLib ++ optional dbusSupport dbus + ++ optional pulseaudioSupport libpulseaudio ++ optional udevSupport udev - ++ optionals x11Support [ libICE libXi libXScrnSaver libXcursor libXinerama libXext libXrandr libXxf86vm ] ++ optionals waylandSupport [ wayland wayland-protocols libxkbcommon ] - ++ optional alsaSupport alsaLib - ++ optional pulseaudioSupport libpulseaudio; + ++ optionals x11Support [ libICE libXi libXScrnSaver libXcursor libXinerama libXext libXrandr libXxf86vm ]; - buildInputs = [ audiofile ] - ++ optional openglSupport libGL + buildInputs = [ audiofile libiconv ] + ++ dlopenBuildInputs ++ optional ibusSupport ibus ++ optionals stdenv.isDarwin [ AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL ]; @@ -76,12 +84,13 @@ stdenv.mkDerivation rec { # SDL API that requires said libraries will fail to start. # # You can grep SDL sources with `grep -rE 'SDL_(NAME|.*_SYM)'` to - # confirm that they actually use most of the `propagatedBuildInputs` - # from above in this way. This is pretty weird. - postFixup = '' + # list the symbols used in this way. + postFixup = let + rpath = makeLibraryPath (dlopenPropagatedBuildInputs ++ dlopenBuildInputs); + in optionalString (stdenv.hostPlatform.extensions.sharedLibrary == ".so") '' for lib in $out/lib/*.so* ; do - if [[ -L "$lib" ]]; then - patchelf --set-rpath "$(patchelf --print-rpath $lib):${lib.makeLibraryPath propagatedBuildInputs}" "$lib" + if ! [[ -L "$lib" ]]; then + patchelf --set-rpath "$(patchelf --print-rpath $lib):${rpath}" "$lib" fi done ''; diff --git a/pkgs/development/libraries/armadillo/default.nix b/pkgs/development/libraries/armadillo/default.nix index abf251f97f97..c61e960e051d 100644 --- a/pkgs/development/libraries/armadillo/default.nix +++ b/pkgs/development/libraries/armadillo/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, cmake, openblasCompat, superlu, hdf5 }: stdenv.mkDerivation rec { - version = "8.500.1"; + version = "8.600.0"; name = "armadillo-${version}"; src = fetchurl { url = "mirror://sourceforge/arma/armadillo-${version}.tar.xz"; - sha256 = "0bm1g93yr79i74382pq1almakpyf42yipiqkqy742jyzwbxhxr5c"; + sha256 = "0h3bj93s7pr7nfwgjx6c49hgf6jlp5ninp921a8krhkzx4swf02z"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/aws-sdk-cpp/default.nix b/pkgs/development/libraries/aws-sdk-cpp/default.nix index 523d3e7ba63f..2144dc4eec26 100644 --- a/pkgs/development/libraries/aws-sdk-cpp/default.nix +++ b/pkgs/development/libraries/aws-sdk-cpp/default.nix @@ -15,13 +15,13 @@ let else throw "Unsupported system!"; in stdenv.mkDerivation rec { name = "aws-sdk-cpp-${version}"; - version = "1.4.70"; + version = "1.4.78"; src = fetchFromGitHub { owner = "awslabs"; repo = "aws-sdk-cpp"; rev = version; - sha256 = "09yybp1nh3w6m3cychx44vvplsy27rxjs948g5gs5qdcgdyx0yx0"; + sha256 = "15nrrv94vp8i1azi2bcpi08wxb2dbqlmy9y6jyfw0n1vkr6gz2fw"; }; # FIXME: might be nice to put different APIs in different outputs diff --git a/pkgs/development/libraries/babl/default.nix b/pkgs/development/libraries/babl/default.nix index a82f4e7dfdae..844028008b02 100644 --- a/pkgs/development/libraries/babl/default.nix +++ b/pkgs/development/libraries/babl/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "babl-0.1.50"; + name = "babl-0.1.52"; src = fetchurl { url = "https://ftp.gtk.org/pub/babl/0.1/${name}.tar.bz2"; - sha256 = "0bavr2y4v88pip7vlca4kwmnksk2qxcvkkdp9jyfi6pzh701sb5m"; + sha256 = "0v7pkr3qd5jnn0pra88d90ixkl5h9ngg6w660nn1cgh4zjh19xs0"; }; doCheck = true; diff --git a/pkgs/development/libraries/boehm-gc/default.nix b/pkgs/development/libraries/boehm-gc/default.nix index 14479a560913..c11d6689624d 100644 --- a/pkgs/development/libraries/boehm-gc/default.nix +++ b/pkgs/development/libraries/boehm-gc/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv, fetchurl, fetchpatch, pkgconfig, libatomic_ops, enableLargeConfig ? false +{ lib, stdenv, fetchurl, fetchpatch, pkgconfig, libatomic_ops +, enableLargeConfig ? false # doc: https://github.com/ivmai/bdwgc/blob/v7.6.6/doc/README.macros#L179 , buildPlatform, hostPlatform }: @@ -25,7 +26,7 @@ stdenv.mkDerivation rec { ''; patches = [ (fetchpatch { - url = "https://raw.githubusercontent.com/gentoo/musl/85b6a600996bdd71162b357e9ba93d8559342432/dev-libs/boehm-gc/files/boehm-gc-7.6.0-sys_select.patch"; + url = "https://gitweb.gentoo.org/proj/musl.git/plain/dev-libs/boehm-gc/files/boehm-gc-7.6.0-sys_select.patch"; sha256 = "1gydwlklvci30f5dpp5ccw2p2qpph5y41r55wx9idamjlq66fbb3"; }) ] ++ # https://github.com/ivmai/bdwgc/pull/208 diff --git a/pkgs/development/libraries/boost/darwin-no-system-python.patch b/pkgs/development/libraries/boost/darwin-no-system-python.patch new file mode 100644 index 000000000000..73e0910336a1 --- /dev/null +++ b/pkgs/development/libraries/boost/darwin-no-system-python.patch @@ -0,0 +1,45 @@ +diff --git a/tools/build/src/tools/python.jam b/tools/build/src/tools/python.jam +index 273b28a..2d2031e 100644 +--- a/tools/build/src/tools/python.jam ++++ b/tools/build/src/tools/python.jam +@@ -428,13 +428,7 @@ local rule windows-installed-pythons ( version ? ) + + local rule darwin-installed-pythons ( version ? ) + { +- version ?= $(.version-countdown) ; +- +- local prefix +- = [ GLOB /System/Library/Frameworks /Library/Frameworks +- : Python.framework ] ; +- +- return $(prefix)/Versions/$(version)/bin/python ; ++ return ; + } + + +@@ -890,25 +884,6 @@ local rule configure ( version ? : cmd-or-prefix ? : includes * : libraries ? : + + # See if we can find a framework directory on darwin. + local framework-directory ; +- if $(target-os) = darwin +- { +- # Search upward for the framework directory. +- local framework-directory = $(libraries[-1]) ; +- while $(framework-directory:D=) && $(framework-directory:D=) != Python.framework +- { +- framework-directory = $(framework-directory:D) ; +- } +- +- if $(framework-directory:D=) = Python.framework +- { +- debug-message framework directory is \"$(framework-directory)\" ; +- } +- else +- { +- debug-message "no framework directory found; using library path" ; +- framework-directory = ; +- } +- } + + local dll-path = $(libraries) ; + diff --git a/pkgs/development/libraries/boost/generic.nix b/pkgs/development/libraries/boost/generic.nix index 34e837f7cd2b..dab6fac6f0cc 100644 --- a/pkgs/development/libraries/boost/generic.nix +++ b/pkgs/development/libraries/boost/generic.nix @@ -87,11 +87,13 @@ stdenv.mkDerivation { inherit src; patchFlags = optionalString (hostPlatform.libc == "msvcrt") "-p0"; - patches = patches ++ optional (hostPlatform.libc == "msvcrt") (fetchurl { - url = "https://svn.boost.org/trac/boost/raw-attachment/tickaet/7262/" - + "boost-mingw.patch"; - sha256 = "0s32kwll66k50w6r5np1y5g907b7lcpsjhfgr7rsw7q5syhzddyj"; - }); + patches = patches + ++ optional stdenv.isDarwin ./darwin-no-system-python.patch + ++ optional (hostPlatform.libc == "msvcrt") (fetchurl { + url = "https://svn.boost.org/trac/boost/raw-attachment/tickaet/7262/" + + "boost-mingw.patch"; + sha256 = "0s32kwll66k50w6r5np1y5g907b7lcpsjhfgr7rsw7q5syhzddyj"; + }); meta = { homepage = http://boost.org/; diff --git a/pkgs/development/libraries/eccodes/default.nix b/pkgs/development/libraries/eccodes/default.nix index a453a70dcad7..5f70a7571bae 100644 --- a/pkgs/development/libraries/eccodes/default.nix +++ b/pkgs/development/libraries/eccodes/default.nix @@ -6,11 +6,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "eccodes-${version}"; - version = "2.7.3"; + version = "2.8.0"; src = fetchurl { url = "https://software.ecmwf.int/wiki/download/attachments/45757960/eccodes-${version}-Source.tar.gz"; - sha256 = "1nvip0cmbhzmgzyi65qw8406p460alw1842dw2r4nq1lpcyi9avg"; + sha256 = "06rf6yzrszfqm74sq3485c7h6m0xjnz35sm31xkk70fxgk129fp0"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/eventlog/default.nix b/pkgs/development/libraries/eventlog/default.nix index b784088dc652..838693ba12d0 100644 --- a/pkgs/development/libraries/eventlog/default.nix +++ b/pkgs/development/libraries/eventlog/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation { Where you had a simple non-structrured string in syslog() you have a combination of description and tag/value pairs. ''; - homepage = http://www.balabit.com/support/community/products/; + homepage = https://www.balabit.com/support/community/products/; license = stdenv.lib.licenses.bsd3; platforms = stdenv.lib.platforms.unix; }; diff --git a/pkgs/development/libraries/flatpak/default.nix b/pkgs/development/libraries/flatpak/default.nix index 9f704dc6a089..9a7acc287cc4 100644 --- a/pkgs/development/libraries/flatpak/default.nix +++ b/pkgs/development/libraries/flatpak/default.nix @@ -4,7 +4,7 @@ , libsoup, lzma, ostree, polkit, python3, systemd, xlibs, valgrind, glib_networking, makeWrapper, gnome3 }: let - version = "0.99.1"; + version = "0.99.2"; desktop_schemas = gnome3.gsettings_desktop_schemas; in stdenv.mkDerivation rec { name = "flatpak-${version}"; @@ -13,7 +13,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "https://github.com/flatpak/flatpak/releases/download/${version}/${name}.tar.xz"; - sha256 = "0f0mfmnc531pifrpkp1qv20wvbvi4la41rwyb3m8lnh1q5bmrch0"; + sha256 = "1cc82nxd290m4ljkd1phllwb3hkhz41h4ncfdrmhbg3gk47zgpyw"; }; patches = [ diff --git a/pkgs/development/libraries/folly/default.nix b/pkgs/development/libraries/folly/default.nix index 97ad0c08ad96..75335f08545e 100644 --- a/pkgs/development/libraries/folly/default.nix +++ b/pkgs/development/libraries/folly/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "folly-${version}"; - version = "2018.06.18.00"; + version = "2018.06.25.00"; src = fetchFromGitHub { owner = "facebook"; repo = "folly"; rev = "v${version}"; - sha256 = "0698wazz99wzfbz29jgkl4rlakypg3v2cnsjg9a0yq83a4y038p7"; + sha256 = "0i0c2130xjrpzf5k29j09ckl1nc9ab2hapf5l6004axq6v1kw9sa"; }; nativeBuildInputs = [ autoreconfHook python pkgconfig ]; diff --git a/pkgs/development/libraries/gegl/4.0.nix b/pkgs/development/libraries/gegl/4.0.nix index 623ee5b3375c..f32bc120170c 100644 --- a/pkgs/development/libraries/gegl/4.0.nix +++ b/pkgs/development/libraries/gegl/4.0.nix @@ -3,13 +3,13 @@ , libwebp, gnome3, libintl }: let - version = "0.4.2"; + version = "0.4.4"; in stdenv.mkDerivation rec { name = "gegl-${version}"; src = fetchurl { url = "https://download.gimp.org/pub/gegl/${stdenv.lib.versions.majorMinor version}/${name}.tar.bz2"; - sha256 = "13bzl0k5l12pk8bkcq4ar7wscbnw7jswhp34mwfsrf10kp0qndba"; + sha256 = "143qwn92xc5wm09p9iwrpw9y0ahha5lcyx1bb0lzwcb1fgd4bjzq"; }; # needs fonts otherwise, don't know how to pass them diff --git a/pkgs/development/libraries/grib-api/default.nix b/pkgs/development/libraries/grib-api/default.nix index 9113b6716649..c8ce99dc90dd 100644 --- a/pkgs/development/libraries/grib-api/default.nix +++ b/pkgs/development/libraries/grib-api/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec{ name = "grib-api-${version}"; - version = "1.26.1"; + version = "1.27.0"; src = fetchurl { url = "https://software.ecmwf.int/wiki/download/attachments/3473437/grib_api-${version}-Source.tar.gz"; - sha256 = "1v1apx9421m8zkjmych5yr66mvqjrrygc98bvyl4miasmsb4ndfs"; + sha256 = "1vx6bx9jhz5vdh2vx5y532ihwgyylagqz6pbx2p2bsx4kmj4pxdd"; }; preConfigure = '' diff --git a/pkgs/development/libraries/gtkspell/3.nix b/pkgs/development/libraries/gtkspell/3.nix index 90bc4fc7f820..d5fc094844a7 100644 --- a/pkgs/development/libraries/gtkspell/3.nix +++ b/pkgs/development/libraries/gtkspell/3.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl, gtk3, aspell, pkgconfig, enchant, isocodes, intltool, gobjectIntrospection}: +{stdenv, fetchurl, gtk3, aspell, pkgconfig, enchant, isocodes, intltool, gobjectIntrospection, vala}: stdenv.mkDerivation rec { name = "gtkspell-${version}"; @@ -11,11 +11,14 @@ stdenv.mkDerivation rec { sha256 = "09jdicmpipmj4v84gnkqwbmj4lh8v0i6pn967rb9jx4zg2ia9x54"; }; - nativeBuildInputs = [ pkgconfig intltool gobjectIntrospection ]; + nativeBuildInputs = [ pkgconfig intltool gobjectIntrospection vala ]; buildInputs = [ aspell gtk3 enchant isocodes ]; propagatedBuildInputs = [ enchant ]; - configureFlags = [ "--enable-introspection" ]; + configureFlags = [ + "--enable-introspection" + "--enable-vala" + ]; meta = with stdenv.lib; { homepage = http://gtkspell.sourceforge.net/; diff --git a/pkgs/development/libraries/harfbuzz/default.nix b/pkgs/development/libraries/harfbuzz/default.nix index 7c67ab48ad4c..88caf7476d02 100644 --- a/pkgs/development/libraries/harfbuzz/default.nix +++ b/pkgs/development/libraries/harfbuzz/default.nix @@ -5,7 +5,7 @@ }: let - version = "1.8.0"; + version = "1.8.1"; inherit (stdenv.lib) optional optionals optionalString; in @@ -14,7 +14,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://www.freedesktop.org/software/harfbuzz/release/harfbuzz-${version}.tar.bz2"; - sha256 = "18wnbq919k5h8pfm1pfy38gs1qzj1hnfr1wq989bix1n2jiii1d1"; + sha256 = "0ifzhqbg4p6ka7ps5c7lapix09i9yy4z7achc1gf91dhvn967vgv"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/iksemel/default.nix b/pkgs/development/libraries/iksemel/default.nix new file mode 100644 index 000000000000..b97f62dcf25c --- /dev/null +++ b/pkgs/development/libraries/iksemel/default.nix @@ -0,0 +1,25 @@ +{ stdenv, autoreconfHook, libtool, pkgconfig, gnutls, fetchFromGitHub, texinfo }: + +stdenv.mkDerivation rec { + name = "iksemel-${version}"; + version = "1.4.2"; + + src = fetchFromGitHub { + owner = "timothytylee"; + repo = "iksemel-1.4"; + rev = "v${version}"; + sha256 = "1xv302p344hnpxqcgs3z6wwxhrik39ckgfw5cjyrw0dkf316z9yh"; + }; + + nativeBuildInputs = [ pkgconfig autoreconfHook libtool texinfo ]; + buildInputs = [ gnutls ]; + + meta = with stdenv.lib; { + description = "XML parser for jabber"; + + homepage = https://github.com/timothytylee/iksemel-1.4; + license = licenses.gpl2; + maintainers = with maintainers; [ disassembler ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/libraries/libaom/default.nix b/pkgs/development/libraries/libaom/default.nix index d11bec2cb4ff..b94c845479aa 100644 --- a/pkgs/development/libraries/libaom/default.nix +++ b/pkgs/development/libraries/libaom/default.nix @@ -1,20 +1,17 @@ -{ stdenv, fetchgit, yasm, perl, cmake, pkgconfig }: +{ stdenv, fetchgit, yasm, perl, cmake, pkgconfig, python3Packages }: stdenv.mkDerivation rec { - name = "libaom-0.1.0"; + name = "libaom-${version}"; + version = "1.0.0"; src = fetchgit { url = "https://aomedia.googlesource.com/aom"; - rev = "105e9b195bb90c9b06edcbcb13b6232dab6db0b7"; - sha256 = "1fl2sca4df01gyn00s0xcwwirxccfnjppvjdrxdnb8f2naj721by"; + rev = "v${version}"; + sha256 = "07h2vhdiq7c3fqaz44rl4vja3dgryi6n7kwbwbj1rh485ski4j82"; }; - buildInputs = [ perl yasm ]; - nativeBuildInputs = [ cmake pkgconfig ]; - - cmakeFlags = [ - "-DCONFIG_UNIT_TESTS=0" - ]; + buildInputs = [ perl yasm ]; + nativeBuildInputs = [ cmake pkgconfig python3Packages.python ]; meta = with stdenv.lib; { description = "AV1 Bitstream and Decoding Library"; @@ -22,4 +19,4 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ kiloreux ]; platforms = platforms.all; }; -} \ No newline at end of file +} diff --git a/pkgs/development/libraries/libdazzle/default.nix b/pkgs/development/libraries/libdazzle/default.nix index 67552181d9a6..7f4eaa5fd14b 100644 --- a/pkgs/development/libraries/libdazzle/default.nix +++ b/pkgs/development/libraries/libdazzle/default.nix @@ -2,7 +2,7 @@ , gtk-doc, docbook_xsl, dbus, xvfb_run, glib, gtk3, gnome3 }: let - version = "3.28.2"; + version = "3.28.3"; pname = "libdazzle"; in stdenv.mkDerivation { @@ -13,7 +13,7 @@ stdenv.mkDerivation { src = fetchurl { url = "mirror://gnome/sources/libdazzle/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "1kfxnyqjwb1r8d4bpr59j1cikd94m6nxf1641hlg7dqlpl9rwlan"; + sha256 = "0q8apibs99yvrwdxlknq4nayss88wsj0rp5fv2x4hh0bgfw8i7w7"; }; nativeBuildInputs = [ ninja meson pkgconfig vala gobjectIntrospection libxml2 gtk-doc docbook_xsl dbus xvfb_run ]; diff --git a/pkgs/development/libraries/libde265/default.nix b/pkgs/development/libraries/libde265/default.nix new file mode 100644 index 000000000000..07823072bad4 --- /dev/null +++ b/pkgs/development/libraries/libde265/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig }: + +stdenv.mkDerivation rec { + version = "1.0.3"; + name = "libde265-${version}"; + + src = fetchFromGitHub { + owner = "strukturag"; + repo = "libde265"; + rev = "v${version}"; + sha256 = "049g77f6c5sbk1h534zi9akj3y5h8zwnca5c9kqqjkn7f17irk10"; + }; + + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + + meta = { + homepage = "https://github.com/strukturag/libde265"; + description = "Open h.265 video codec implementation"; + license = stdenv.lib.licenses.lgpl3; + platforms = stdenv.lib.platforms.unix; + maintainers = with stdenv.lib.maintainers; [ gebner ]; + }; + +} diff --git a/pkgs/development/libraries/libfive/default.nix b/pkgs/development/libraries/libfive/default.nix new file mode 100644 index 000000000000..2c3085fc384f --- /dev/null +++ b/pkgs/development/libraries/libfive/default.nix @@ -0,0 +1,30 @@ +{ stdenv, fetchFromGitHub, cmake, ninja, pkgconfig, eigen3_3, +zlib, libpng, boost, qt5, guile +}: + +stdenv.mkDerivation rec { + name = "libfive-${version}"; + version = "2018-07-01"; + + src = fetchFromGitHub { + owner = "libfive"; + repo = "libfive"; + rev = "0f517dde9521d751310a22f85ee69b2c84690267"; + sha256 = "0bfxysf5f4ripgcv546il8wnw5p0d4s75kdjlwvj32549537hlz0"; + }; + nativeBuildInputs = [ cmake ninja pkgconfig ]; + buildInputs = [ eigen3_3 zlib libpng boost qt5.qtimageformats guile ]; + + # Link "Studio" binary to "libfive-studio" to be more obvious: + postFixup = '' + ln -s "$out/bin/Studio" "$out/bin/libfive-studio" + ''; + + meta = with stdenv.lib; { + description = "Infrastructure for solid modeling with F-Reps in C, C++, and Guile"; + homepage = https://libfive.com/; + maintainers = with maintainers; [ hodapp ]; + license = licenses.lgpl2; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/libraries/libheif/default.nix b/pkgs/development/libraries/libheif/default.nix new file mode 100644 index 000000000000..cdc03c01a022 --- /dev/null +++ b/pkgs/development/libraries/libheif/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, pruneLibtoolFiles, libde265, x265, libpng, libjpeg }: + +stdenv.mkDerivation rec { + version = "1.3.2"; + name = "libheif-${version}"; + + src = fetchFromGitHub { + owner = "strukturag"; + repo = "libheif"; + rev = "v${version}"; + sha256 = "0hk8mzig2kp5f94j4jwqxzjrm7ffk16ffvxl92rf0afsh6vgnz7w"; + }; + + nativeBuildInputs = [ autoreconfHook pkgconfig pruneLibtoolFiles ]; + buildInputs = [ libde265 x265 libpng libjpeg ]; + + enableParallelBuilding = true; + + meta = { + homepage = "http://www.libheif.org/"; + description = "ISO/IEC 23008-12:2017 HEIF image file format decoder and encoder"; + license = stdenv.lib.licenses.lgpl3; + platforms = stdenv.lib.platforms.unix; + maintainers = with stdenv.lib.maintainers; [ gebner ]; + }; + +} diff --git a/pkgs/development/libraries/libndctl/default.nix b/pkgs/development/libraries/libndctl/default.nix index fa48fc390aa0..d9a77f4bb8ba 100644 --- a/pkgs/development/libraries/libndctl/default.nix +++ b/pkgs/development/libraries/libndctl/default.nix @@ -1,8 +1,8 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, autoconf, automake, asciidoc, docbook_xsl, docbook_xml_dtd_45, libxslt, xmlto, pkgconfig, json_c, kmod, which, systemd, utillinux +{ stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, autoconf, automake, asciidoc, docbook_xsl, docbook_xml_dtd_45, libxslt, xmlto, pkgconfig, json_c, kmod, which, systemd, utillinux }: let - version = "60.3"; + version = "61.1"; in stdenv.mkDerivation rec { name = "libndctl-${version}"; @@ -10,7 +10,7 @@ in stdenv.mkDerivation rec { owner = "pmem"; repo = "ndctl"; rev = "v${version}"; - sha256 = "0w19yh6f9skf5zy4bhdjlrn3wdx5xx9cq8j6h04cmw4nla6zj9ar"; + sha256 = "1k996p757nwvkg86firx0yh39dsa9jx5w14rlfl4hlg2h9kkivnx"; }; outputs = [ "out" "man" "dev" ]; @@ -23,6 +23,14 @@ in stdenv.mkDerivation rec { json_c kmod systemd utillinux ]; + patches = [ + (fetchpatch { + name = "add-missing-include-for-ssize_t.patch"; + url = "https://github.com/pmem/ndctl/commit/8f1798d14dda367c659b87362edb312739830ddf.patch"; + sha256 = "1jr5kh087938msl22hgjngbf025n9iplz0czmybfp7lavl73m0pm"; + }) + ]; + preAutoreconf = '' substituteInPlace configure.ac --replace "which" "${which}/bin/which" substituteInPlace git-version --replace /bin/bash ${stdenv.shell} diff --git a/pkgs/development/libraries/libnfs/default.nix b/pkgs/development/libraries/libnfs/default.nix index 2955aaebc010..96bd983e64cd 100644 --- a/pkgs/development/libraries/libnfs/default.nix +++ b/pkgs/development/libraries/libnfs/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "libnfs-${version}"; - version = "2.0.0"; + version = "3.0.0"; src = fetchFromGitHub { owner = "sahlberg"; repo = "libnfs"; rev = "libnfs-${version}"; - sha256 = "1xd1xb09jxwmx7hblv0f9gxv7i1glk3nbj2vyq50zpi158lnf2mb"; + sha256 = "115p55y2cbs92z5lmcnjx1v29lwinpgq4sha9v1kq1vd8674h404"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/development/libraries/libodfgen/default.nix b/pkgs/development/libraries/libodfgen/default.nix index 8a3e22ef31f7..54f1d2617287 100644 --- a/pkgs/development/libraries/libodfgen/default.nix +++ b/pkgs/development/libraries/libodfgen/default.nix @@ -3,11 +3,11 @@ let s = # Generated upstream information rec { baseName="libodfgen"; - version="0.1.6"; + version="0.1.7"; name="${baseName}-${version}"; - hash="1sdr42f0bigip14zhs51m0zdwwzzl1mwmk882l4khpph8jmi1ch3"; - url="mirror://sourceforge/project/libwpd/libodfgen/libodfgen-0.1.6/libodfgen-0.1.6.tar.xz"; - sha256="1sdr42f0bigip14zhs51m0zdwwzzl1mwmk882l4khpph8jmi1ch3"; + hash="0cdq48wlpp8m0qmndybv64r0m4vh0qsqx69cn6ms533cjlgljgij"; + url="mirror://sourceforge/project/libwpd/libodfgen/libodfgen-0.1.7/libodfgen-0.1.7.tar.xz"; + sha256="0cdq48wlpp8m0qmndybv64r0m4vh0qsqx69cn6ms533cjlgljgij"; }; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ diff --git a/pkgs/development/libraries/libqalculate/default.nix b/pkgs/development/libraries/libqalculate/default.nix index a74095bce297..5c7868983708 100644 --- a/pkgs/development/libraries/libqalculate/default.nix +++ b/pkgs/development/libraries/libqalculate/default.nix @@ -1,13 +1,15 @@ -{ stdenv, fetchurl, mpfr, libxml2, intltool, pkgconfig, doxygen, +{ stdenv, fetchFromGitHub, mpfr, libxml2, intltool, pkgconfig, doxygen, autoreconfHook, readline, libiconv, icu, curl, gnuplot, gettext }: stdenv.mkDerivation rec { name = "libqalculate-${version}"; - version = "2.5.0"; + version = "2.6.0b"; - src = fetchurl { - url = "https://github.com/Qalculate/libqalculate/archive/v${version}.tar.gz"; - sha256 = "0xs2qjr93k43p6j126xj20fgb1n2jv56rhgc211yv1l46crbqxfv"; + src = fetchFromGitHub { + owner = "qalculate"; + repo = "libqalculate"; + rev = "v${version}"; + sha256 = "1g0pmf33vrjabxmx6lyysgkxa6hg8qmwk0n5ncl4pr8sdkimswxw"; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/librealsense/default.nix b/pkgs/development/libraries/librealsense/default.nix index b6328a7354cf..464e702acabb 100644 --- a/pkgs/development/libraries/librealsense/default.nix +++ b/pkgs/development/libraries/librealsense/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "librealsense-${version}"; - version = "2.12.0"; + version = "2.13.0"; src = fetchFromGitHub { owner = "IntelRealSense"; repo = "librealsense"; rev = "v${version}"; - sha256 = "1hmrp39x6c8i1l5d0hla0c8k6mf70sdyfjrlnwiqyi2p4s6phyd2"; + sha256 = "0rs7ic95kix173kl1ijb1riigjxnp7yqvps35hfxbhjqbjc2wfgn"; }; buildInputs = [ diff --git a/pkgs/development/libraries/libsearpc/default.nix b/pkgs/development/libraries/libsearpc/default.nix index fae6dc82fcf6..c2f0da910055 100644 --- a/pkgs/development/libraries/libsearpc/default.nix +++ b/pkgs/development/libraries/libsearpc/default.nix @@ -1,15 +1,15 @@ -{stdenv, fetchurl, automake, autoconf, pkgconfig, libtool, python2Packages, glib, jansson}: +{stdenv, fetchFromGitHub, automake, autoconf, pkgconfig, libtool, python2Packages, glib, jansson}: -stdenv.mkDerivation rec -{ - version = "3.0.7"; - seafileVersion = "6.1.0"; +stdenv.mkDerivation rec { + version = "3.0.8"; name = "libsearpc-${version}"; - src = fetchurl - { - url = "https://github.com/haiwen/libsearpc/archive/v${version}.tar.gz"; - sha256 = "0fdrgksdwd4qxp7qvh75y39dy52h2f5wfjbqr00h3rwkbx4npvpg"; + src = fetchFromGitHub { + owner = "haiwen"; + repo = "libsearpc"; + # Tag is missing: https://github.com/haiwen/libsearpc/commit/12a01268825e9c7e17794c58c367e3b4db912ad9 + rev = "12a01268825e9c7e17794c58c367e3b4db912ad9"; + sha256 = "00ck1hl1x0pn22q3ba32dq3ckc4nrsg58irsmrnmalqbsffhcim0"; }; patches = [ ./libsearpc.pc.patch ]; @@ -18,12 +18,13 @@ stdenv.mkDerivation rec buildInputs = [ automake autoconf libtool python2Packages.python python2Packages.simplejson ]; propagatedBuildInputs = [ glib jansson ]; + postPatch = "patchShebangs autogen.sh"; + preConfigure = "./autogen.sh"; buildPhase = "make -j1"; - meta = - { + meta = { homepage = https://github.com/haiwen/libsearpc; description = "A simple and easy-to-use C language RPC framework (including both server side & client side) based on GObject System"; license = stdenv.lib.licenses.lgpl3; diff --git a/pkgs/development/libraries/libvmi/default.nix b/pkgs/development/libraries/libvmi/default.nix new file mode 100644 index 000000000000..28cfe56d59b8 --- /dev/null +++ b/pkgs/development/libraries/libvmi/default.nix @@ -0,0 +1,43 @@ +{ stdenv, + fetchFromGitHub, + autoreconfHook, + bison, + flex, + glib, + pkgconfig, + json_c, + xen, + libvirt, + xenSupport ? true }: + +with stdenv.lib; + +stdenv.mkDerivation rec { + name = "libvmi-${version}"; + version = "0.12.0"; + + src = fetchFromGitHub { + owner = "libvmi"; + repo = "libvmi"; + rev = "v${version}"; + sha256 = "0wbi2nasb1gbci6cq23g6kq7i10rwi1y7r44rl03icr5prqjpdyv"; + }; + + buildInputs = [ glib libvirt json_c ] ++ (optional xenSupport xen); + nativeBuildInputs = [ autoreconfHook bison flex pkgconfig ]; + + configureFlags = optional (!xenSupport) "--disable-xen"; + + meta = with stdenv.lib; { + homepage = "http://libvmi.com/"; + description = "A C library for virtual machine introspection"; + longDescription = '' + LibVMI is a C library with Python bindings that makes it easy to monitor the low-level + details of a running virtual machine by viewing its memory, trapping on hardware events, + and accessing the vCPU registers. + ''; + license = with licenses; [ gpl3 lgpl3 ]; + platforms = platforms.linux; + maintainers = with maintainers; [ lschuermann ]; + }; +} diff --git a/pkgs/development/libraries/libyaml/default.nix b/pkgs/development/libraries/libyaml/default.nix index 150da3d45997..7178e64b6b6a 100644 --- a/pkgs/development/libraries/libyaml/default.nix +++ b/pkgs/development/libraries/libyaml/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation { }; meta = with stdenv.lib; { - homepage = http://pyyaml.org/; + homepage = https://pyyaml.org/; description = "A YAML 1.1 parser and emitter written in C"; license = licenses.mit; platforms = platforms.all; diff --git a/pkgs/development/libraries/poppler/default.nix b/pkgs/development/libraries/poppler/default.nix index f8a17c9f5c3f..9b0593ceb6f8 100644 --- a/pkgs/development/libraries/poppler/default.nix +++ b/pkgs/development/libraries/poppler/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, cmake, ninja, pkgconfig, libiconv, libintl +{ stdenv, lib, fetchurl, cmake, ninja, pkgconfig, libiconv, libintl, fetchpatch , zlib, curl, cairo, freetype, fontconfig, lcms, libjpeg, openjpeg , withData ? true, poppler_data , qt5Support ? false, qtbase ? null @@ -33,6 +33,11 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ninja pkgconfig ]; + patches = lib.optional stdenv.isDarwin (fetchpatch { + url = "https://cgit.freedesktop.org/poppler/poppler/patch/?id=267228bb071016621c80fc8514927905164aaeea"; + sha256 = "0i2sbxz1mrsnj75qgqaadayjgs48ay2mhrbkij95djy6am44m54k"; + }); + # Not sure when and how to pass it. It seems an upstream bug anyway. CXXFLAGS = stdenv.lib.optionalString stdenv.cc.isClang "-std=c++11"; diff --git a/pkgs/development/libraries/qpdf/default.nix b/pkgs/development/libraries/qpdf/default.nix index 7622254afd97..0aa39532325d 100644 --- a/pkgs/development/libraries/qpdf/default.nix +++ b/pkgs/development/libraries/qpdf/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, fetchpatch, libjpeg, zlib, perl }: -let version = "8.0.2"; +let version = "8.1.0"; in stdenv.mkDerivation rec { name = "qpdf-${version}"; src = fetchurl { url = "mirror://sourceforge/qpdf/qpdf/${version}/${name}.tar.gz"; - sha256 = "1hf8jfjar8p7v288d7ccmr8w171mv9kb86b6hq1nk58mnlq1g7mh"; + sha256 = "1m3hcgip6bzjx4gd7wq1328p8zi3pq5savzncdyln6l0lcklh7vx"; }; nativeBuildInputs = [ perl ]; diff --git a/pkgs/development/libraries/qt-5/5.11/fetch.sh b/pkgs/development/libraries/qt-5/5.11/fetch.sh index aaf42c5c5b21..ce82e243af77 100644 --- a/pkgs/development/libraries/qt-5/5.11/fetch.sh +++ b/pkgs/development/libraries/qt-5/5.11/fetch.sh @@ -1,2 +1,2 @@ -WGET_ARGS=( http://download.qt.io/official_releases/qt/5.11/5.11.0/submodules/ \ +WGET_ARGS=( http://download.qt.io/official_releases/qt/5.11/5.11.1/submodules/ \ -A '*.tar.xz' ) diff --git a/pkgs/development/libraries/qt-5/5.11/qtbase-darwin.patch b/pkgs/development/libraries/qt-5/5.11/qtbase-darwin.patch index 86c55f083989..f66351752054 100644 --- a/pkgs/development/libraries/qt-5/5.11/qtbase-darwin.patch +++ b/pkgs/development/libraries/qt-5/5.11/qtbase-darwin.patch @@ -20,9 +20,8 @@ index 341d3bccf2..3368234c26 100644 for (NSString *ifName in wifiInterfaces) { scanThread->interfaceName = QString::fromNSString(ifName); scanThread->start(); -diff --git a/src/plugins/platforms/cocoa/qcocoascreen.mm b/src/plugins/platforms/cocoa/qcoco -ascreen.mm -index a17a02b6..d76c42fa 100644 +diff --git a/src/plugins/platforms/cocoa/qcocoascreen.mm b/src/plugins/platforms/cocoa/qcocoascreen.mm +index a17a02b629..d76c42fa03 100644 --- a/src/plugins/platforms/cocoa/qcocoascreen.mm +++ b/src/plugins/platforms/cocoa/qcocoascreen.mm @@ -114,7 +114,7 @@ void QCocoaScreen::updateGeometry() @@ -35,10 +34,10 @@ index a17a02b6..d76c42fa 100644 m_availableGeometry = qt_mac_flip(QRectF::fromCGRect(nsScreen.visibleFrame), primaryScreenGeometry).toRect(); diff --git a/src/plugins/platforms/cocoa/qcocoawindow.mm b/src/plugins/platforms/cocoa/qcocoawindow.mm -index 54254455e4..e10f62909a 100644 +index 72f3bc0075..a9c058a850 100644 --- a/src/plugins/platforms/cocoa/qcocoawindow.mm +++ b/src/plugins/platforms/cocoa/qcocoawindow.mm -@@ -1674,7 +1674,7 @@ void QCocoaWindow::applyContentBorderThickness(NSWindow *window) +@@ -1676,7 +1676,7 @@ void QCocoaWindow::applyContentBorderThickness(NSWindow *window) if (!m_drawContentBorderGradient) { window.styleMask = window.styleMask & ~NSTexturedBackgroundWindowMask; diff --git a/pkgs/development/libraries/qt-5/5.11/qtbase-revert-no-macos10.10.patch b/pkgs/development/libraries/qt-5/5.11/qtbase-revert-no-macos10.10.patch index e39934802cdf..29776518379d 100644 --- a/pkgs/development/libraries/qt-5/5.11/qtbase-revert-no-macos10.10.patch +++ b/pkgs/development/libraries/qt-5/5.11/qtbase-revert-no-macos10.10.patch @@ -21,7 +21,7 @@ Reviewed-by: Konstantin Ritt <ritt.ks@gmail.com> 3 files changed, 4 insertions(+), 34 deletions(-) diff --git a/src/platformsupport/fontdatabases/mac/qfontengine_coretext.mm b/src/platformsupport/fontdatabases/mac/qfontengine_coretext.mm -index 98b753ef..489d9cd0 100644 +index 98b753eff9..489d9cd031 100644 --- a/src/platformsupport/fontdatabases/mac/qfontengine_coretext.mm +++ b/src/platformsupport/fontdatabases/mac/qfontengine_coretext.mm @@ -47,18 +47,28 @@ @@ -57,7 +57,7 @@ index 98b753ef..489d9cd0 100644 #define kCTFontWeightThin NSFontWeightThin #define kCTFontWeightLight NSFontWeightLight diff --git a/src/plugins/platforms/cocoa/qcocoafiledialoghelper.mm b/src/plugins/platforms/cocoa/qcocoafiledialoghelper.mm -index 94f2125b..272cd9f3 100644 +index 94f2125bad..272cd9f3dc 100644 --- a/src/plugins/platforms/cocoa/qcocoafiledialoghelper.mm +++ b/src/plugins/platforms/cocoa/qcocoafiledialoghelper.mm @@ -162,7 +162,11 @@ QT_NAMESPACE_ALIAS_OBJC_CLASS(QNSOpenSavePanelDelegate); @@ -74,11 +74,11 @@ index 94f2125b..272cd9f3 100644 if (mOptions->isLabelExplicitlySet(QFileDialogOptions::Accept)) [mSavePanel setPrompt:[self strip:options->labelText(QFileDialogOptions::Accept)]]; diff --git a/src/plugins/platforms/cocoa/qnswindowdelegate.mm b/src/plugins/platforms/cocoa/qnswindowdelegate.mm -index 6e5623d6..cdecd86d 100644 +index 057a4c2943..eb55e50622 100644 --- a/src/plugins/platforms/cocoa/qnswindowdelegate.mm +++ b/src/plugins/platforms/cocoa/qnswindowdelegate.mm -@@ -80,6 +80,22 @@ static QRegExp whitespaceRegex = QRegExp(QStringLiteral("\\s*")); - return NSRectFromCGRect(m_cocoaWindow->screen()->availableGeometry().toCGRect()); +@@ -103,6 +103,22 @@ static QRegExp whitespaceRegex = QRegExp(QStringLiteral("\\s*")); + return QCocoaScreen::mapToNative(maximizedFrame); } +#if QT_MACOS_DEPLOYMENT_TARGET_BELOW(__MAC_10_11) diff --git a/pkgs/development/libraries/qt-5/5.11/qtbase.patch b/pkgs/development/libraries/qt-5/5.11/qtbase.patch index ec8d27ebb6c2..fa0b2c51c46e 100644 --- a/pkgs/development/libraries/qt-5/5.11/qtbase.patch +++ b/pkgs/development/libraries/qt-5/5.11/qtbase.patch @@ -12,7 +12,7 @@ index 5208379f9a..92fe29a0ac 100644 QMAKE_LFLAGS_REL_RPATH = diff --git a/mkspecs/features/create_cmake.prf b/mkspecs/features/create_cmake.prf -index 66acedef55..fe01bf8de4 100644 +index 2ed708e085..05e60ff45f 100644 --- a/mkspecs/features/create_cmake.prf +++ b/mkspecs/features/create_cmake.prf @@ -21,7 +21,7 @@ load(cmake_functions) @@ -24,7 +24,7 @@ index 66acedef55..fe01bf8de4 100644 contains(CMAKE_INSTALL_LIBS_DIR, ^(/usr)?/lib(64)?.*): CMAKE_USR_MOVE_WORKAROUND = $$CMAKE_INSTALL_LIBS_DIR CMAKE_OUT_DIR = $$MODULE_BASE_OUTDIR/lib/cmake -@@ -47,49 +47,20 @@ split_incpath { +@@ -51,45 +51,20 @@ split_incpath { $$cmake_extra_source_includes.output } @@ -33,11 +33,9 @@ index 66acedef55..fe01bf8de4 100644 - CMAKE_INCLUDE_DIR = $$[QT_INSTALL_HEADERS]/ - CMAKE_INCLUDE_DIR_IS_ABSOLUTE = True -} -- --isEmpty(QT.$${MODULE}_private.includes)| \ -- !exists($$first(QT.$${MODULE}_private.includes)): \ -- CMAKE_NO_PRIVATE_INCLUDES = true -- ++CMAKE_INCLUDE_DIR = $$NIX_OUTPUT_DEV/include/ ++CMAKE_INCLUDE_DIR_IS_ABSOLUTE = True + -CMAKE_LIB_DIR = $$cmakeRelativePath($$[QT_INSTALL_LIBS], $$[QT_INSTALL_PREFIX]) -contains(CMAKE_LIB_DIR,"^\\.\\./.*") { - CMAKE_LIB_DIR = $$[QT_INSTALL_LIBS]/ @@ -48,25 +46,23 @@ index 66acedef55..fe01bf8de4 100644 - # installed in $${CMAKE_LIB_DIR}/cmake/Qt5$${CMAKE_MODULE_NAME} - CMAKE_RELATIVE_INSTALL_DIR = "$${CMAKE_RELATIVE_INSTALL_LIBS_DIR}../../" -} -+CMAKE_INCLUDE_DIR = $$NIX_OUTPUT_DEV/include/ -+CMAKE_INCLUDE_DIR_IS_ABSOLUTE = True ++CMAKE_BIN_DIR = $$NIX_OUTPUT_BIN/bin/ ++CMAKE_BIN_DIR_IS_ABSOLUTE = True -CMAKE_BIN_DIR = $$cmakeRelativePath($$[QT_HOST_BINS], $$[QT_INSTALL_PREFIX]) -contains(CMAKE_BIN_DIR, "^\\.\\./.*") { - CMAKE_BIN_DIR = $$[QT_HOST_BINS]/ - CMAKE_BIN_DIR_IS_ABSOLUTE = True -} -+CMAKE_BIN_DIR = $$NIX_OUTPUT_BIN/bin/ -+CMAKE_BIN_DIR_IS_ABSOLUTE = True ++CMAKE_LIB_DIR = $$NIX_OUTPUT_OUT/lib/ ++CMAKE_LIB_DIR_IS_ABSOLUTE = True -CMAKE_PLUGIN_DIR = $$cmakeRelativePath($$[QT_INSTALL_PLUGINS], $$[QT_INSTALL_PREFIX]) -contains(CMAKE_PLUGIN_DIR, "^\\.\\./.*") { - CMAKE_PLUGIN_DIR = $$[QT_INSTALL_PLUGINS]/ - CMAKE_PLUGIN_DIR_IS_ABSOLUTE = True -} -+CMAKE_LIB_DIR = $$NIX_OUTPUT_OUT/lib/ -+CMAKE_LIB_DIR_IS_ABSOLUTE = True - +- -win32:!static:!staticlib { - CMAKE_DLL_DIR = $$cmakeRelativePath($$[QT_INSTALL_BINS], $$[QT_INSTALL_PREFIX]) - contains(CMAKE_DLL_DIR, "^\\.\\./.*") { @@ -85,7 +81,7 @@ index 66acedef55..fe01bf8de4 100644 static|staticlib:CMAKE_STATIC_TYPE = true -@@ -169,7 +140,7 @@ contains(CONFIG, plugin) { +@@ -169,7 +144,7 @@ contains(CONFIG, plugin) { cmake_target_file cmake_qt5_plugin_file.files = $$cmake_target_file.output @@ -94,7 +90,7 @@ index 66acedef55..fe01bf8de4 100644 INSTALLS += cmake_qt5_plugin_file return() -@@ -316,7 +287,7 @@ exists($$cmake_macros_file.input) { +@@ -316,7 +291,7 @@ exists($$cmake_macros_file.input) { cmake_qt5_module_files.files += $$cmake_macros_file.output } @@ -264,13 +260,14 @@ index 27f4c277d6..18b4813e25 100644 set_target_properties(Qt5::${Plugin} PROPERTIES \"IMPORTED_LOCATION_${Configuration}\" ${imported_location} diff --git a/mkspecs/features/mac/default_post.prf b/mkspecs/features/mac/default_post.prf -index 50a1ec6764..d6368b769e 100644 +index 21d487f1f9..a0e5c68b7e 100644 --- a/mkspecs/features/mac/default_post.prf +++ b/mkspecs/features/mac/default_post.prf -@@ -25,188 +25,3 @@ qt { +@@ -24,196 +24,3 @@ qt { + } } } - +- -# Add the same default rpaths as Xcode does for new projects. -# This is especially important for iOS/tvOS/watchOS where no other option is possible. -!no_default_rpath { @@ -456,14 +453,21 @@ index 50a1ec6764..d6368b769e 100644 - cache(QMAKE_XCODE_VERSION, stash) - -QMAKE_XCODE_LIBRARY_SUFFIX = $$qtPlatformTargetSuffix() +- +-xcode_product_bundle_identifier_setting.name = PRODUCT_BUNDLE_IDENTIFIER +-xcode_product_bundle_identifier_setting.value = $$QMAKE_TARGET_BUNDLE_PREFIX +-isEmpty(xcode_product_bundle_identifier_setting.value): \ +- xcode_product_bundle_identifier_setting.value = "com.yourcompany" +-xcode_product_bundle_identifier_setting.value = "$${xcode_product_bundle_identifier_setting.value}.${PRODUCT_NAME:rfc1034identifier}" +-QMAKE_MAC_XCODE_SETTINGS += xcode_product_bundle_identifier_setting diff --git a/mkspecs/features/mac/default_pre.prf b/mkspecs/features/mac/default_pre.prf -index f1a4ca77b2..61ed486a76 100644 +index e3534561a5..3b01424e67 100644 --- a/mkspecs/features/mac/default_pre.prf +++ b/mkspecs/features/mac/default_pre.prf -@@ -1,67 +1,3 @@ +@@ -1,60 +1,2 @@ CONFIG = asset_catalogs rez $$CONFIG load(default_pre) - +- -isEmpty(QMAKE_XCODE_DEVELOPER_PATH) { - # Get path of Xcode's Developer directory - QMAKE_XCODE_DEVELOPER_PATH = $$system("/usr/bin/xcode-select --print-path 2>/dev/null") @@ -521,13 +525,6 @@ index f1a4ca77b2..61ed486a76 100644 -xcode_copy_phase_strip_setting.name = COPY_PHASE_STRIP -xcode_copy_phase_strip_setting.value = NO -QMAKE_MAC_XCODE_SETTINGS += xcode_copy_phase_strip_setting -- --xcode_product_bundle_identifier_setting.name = PRODUCT_BUNDLE_IDENTIFIER --xcode_product_bundle_identifier_setting.value = $$QMAKE_TARGET_BUNDLE_PREFIX --isEmpty(xcode_product_bundle_identifier_setting.value): \ -- xcode_product_bundle_identifier_setting.value = "com.yourcompany" --xcode_product_bundle_identifier_setting.value = "$${xcode_product_bundle_identifier_setting.value}.${PRODUCT_NAME:rfc1034identifier}" --QMAKE_MAC_XCODE_SETTINGS += xcode_product_bundle_identifier_setting diff --git a/mkspecs/features/mac/sdk.prf b/mkspecs/features/mac/sdk.prf index 8360dd8b38..8b13789179 100644 --- a/mkspecs/features/mac/sdk.prf @@ -658,7 +655,7 @@ index 1848f00e90..2af93675c5 100644 + MODULE_QMAKE_OUTDIR = $$NIX_OUTPUT_OUT } diff --git a/mkspecs/features/qt_common.prf b/mkspecs/features/qt_common.prf -index f4ae5bde80..6d4c6d223f 100644 +index 415044bb64..7163ef56cd 100644 --- a/mkspecs/features/qt_common.prf +++ b/mkspecs/features/qt_common.prf @@ -32,8 +32,8 @@ contains(TEMPLATE, .*lib) { @@ -1044,10 +1041,10 @@ index cc982b3379..0c5005d3d7 100644 #endif } diff --git a/src/plugins/platforms/xcb/qxcbcursor.cpp b/src/plugins/platforms/xcb/qxcbcursor.cpp -index 8d151b760b..a8b39d282a 100644 +index b401100dd4..b45a290065 100644 --- a/src/plugins/platforms/xcb/qxcbcursor.cpp +++ b/src/plugins/platforms/xcb/qxcbcursor.cpp -@@ -314,10 +314,10 @@ QXcbCursor::QXcbCursor(QXcbConnection *conn, QXcbScreen *screen) +@@ -316,10 +316,10 @@ QXcbCursor::QXcbCursor(QXcbConnection *conn, QXcbScreen *screen) #if QT_CONFIG(xcb_xlib) && QT_CONFIG(library) static bool function_ptrs_not_initialized = true; if (function_ptrs_not_initialized) { diff --git a/pkgs/development/libraries/qt-5/5.11/qtdeclarative.patch b/pkgs/development/libraries/qt-5/5.11/qtdeclarative.patch index 01a975c14ec7..8f5b5d4790fb 100644 --- a/pkgs/development/libraries/qt-5/5.11/qtdeclarative.patch +++ b/pkgs/development/libraries/qt-5/5.11/qtdeclarative.patch @@ -1,8 +1,8 @@ diff --git a/src/qml/qml/qqmlimport.cpp b/src/qml/qml/qqmlimport.cpp -index a7cafa1a9..e17ffd35b 100644 +index 005db4248..685c5b1b2 100644 --- a/src/qml/qml/qqmlimport.cpp +++ b/src/qml/qml/qqmlimport.cpp -@@ -1737,6 +1737,15 @@ QQmlImportDatabase::QQmlImportDatabase(QQmlEngine *e) +@@ -1760,6 +1760,15 @@ QQmlImportDatabase::QQmlImportDatabase(QQmlEngine *e) QString installImportsPath = QLibraryInfo::location(QLibraryInfo::Qml2ImportsPath); addImportPath(installImportsPath); @@ -19,10 +19,10 @@ index a7cafa1a9..e17ffd35b 100644 if (Q_UNLIKELY(!qEnvironmentVariableIsEmpty("QML2_IMPORT_PATH"))) { const QString envImportPath = qEnvironmentVariable("QML2_IMPORT_PATH"); diff --git a/tools/qmlcachegen/qmlcache.prf b/tools/qmlcachegen/qmlcache.prf -index 330da358b..cdf570205 100644 +index 537eaf62e..e21de58f6 100644 --- a/tools/qmlcachegen/qmlcache.prf +++ b/tools/qmlcachegen/qmlcache.prf -@@ -44,7 +44,7 @@ defineReplace(qmlCacheOutputFileName) { +@@ -26,7 +26,7 @@ defineReplace(qmlCacheOutputFileName) { } qmlcacheinst.base = $$QMLCACHE_DESTDIR diff --git a/pkgs/development/libraries/qt-5/5.11/srcs.nix b/pkgs/development/libraries/qt-5/5.11/srcs.nix index f570b793a241..b6668a91606c 100644 --- a/pkgs/development/libraries/qt-5/5.11/srcs.nix +++ b/pkgs/development/libraries/qt-5/5.11/srcs.nix @@ -3,323 +3,323 @@ { qt3d = { - version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qt3d-everywhere-src-5.11.0.tar.xz"; - sha256 = "1h3hb395vpbblwin5bx3zazwcz5gwf2fjawdcqd866mkmcb1am2d"; - name = "qt3d-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qt3d-everywhere-src-5.11.1.tar.xz"; + sha256 = "03fkbrghj40rp8pf5r5979pcvq7qjsj7db446r6fl6slwphmk1nb"; + name = "qt3d-everywhere-src-5.11.1.tar.xz"; }; }; qtactiveqt = { - version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qtactiveqt-everywhere-src-5.11.0.tar.xz"; - sha256 = "019ppkqi8kzd3sjxilig9sqqfw331d3nbq8c3d4xanwqsl6vxak9"; - name = "qtactiveqt-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qtactiveqt-everywhere-src-5.11.1.tar.xz"; + sha256 = "1f9w3dc2wvhz7pqhrsb2p908kc2c6xrqsp82ny8akil4xx6nrvn6"; + name = "qtactiveqt-everywhere-src-5.11.1.tar.xz"; }; }; qtandroidextras = { - version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qtandroidextras-everywhere-src-5.11.0.tar.xz"; - sha256 = "1yw1fsjbs4ibxi01nxk1431v7ky22ll9npxc5x7fpd4w3h6y73gw"; - name = "qtandroidextras-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qtandroidextras-everywhere-src-5.11.1.tar.xz"; + sha256 = "1qiggrz2hdb7vrkvsh71hqdipj3klak0jpn2nq8qpilqxgb9dx76"; + name = "qtandroidextras-everywhere-src-5.11.1.tar.xz"; }; }; qtbase = { - version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qtbase-everywhere-src-5.11.0.tar.xz"; - sha256 = "0rny87ypnkkvyp9p76nim77v6np0cdf1dbjfmcilklzphkdlcvpd"; - name = "qtbase-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qtbase-everywhere-src-5.11.1.tar.xz"; + sha256 = "0ipv18ypbgpxhh49rfplqmflskmnhhwj1bjr5hrwi0jpvar4gl50"; + name = "qtbase-everywhere-src-5.11.1.tar.xz"; }; }; qtcanvas3d = { - version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qtcanvas3d-everywhere-src-5.11.0.tar.xz"; - sha256 = "1kqcaks6lkz8cp9s3pwrvgrr8381rjzf5fbf2bzshdw7psphxiiz"; - name = "qtcanvas3d-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qtcanvas3d-everywhere-src-5.11.1.tar.xz"; + sha256 = "1pif3m1f44jrly2nh0hzid6dmdxqiy5qgx645hz6g5fmpl113d8g"; + name = "qtcanvas3d-everywhere-src-5.11.1.tar.xz"; }; }; qtcharts = { - version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qtcharts-everywhere-src-5.11.0.tar.xz"; - sha256 = "0lg39vd6i0l76spjz6bhb1kkpbk2mgc0hxccj7733xxbxaz14vn4"; - name = "qtcharts-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qtcharts-everywhere-src-5.11.1.tar.xz"; + sha256 = "0avscsni84zrzydilkkp456sbaypyzhkn42qygjdq7wcn045zxk2"; + name = "qtcharts-everywhere-src-5.11.1.tar.xz"; }; }; qtconnectivity = { - 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version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qtx11extras-everywhere-src-5.11.0.tar.xz"; - sha256 = "13vbx61wcd8pnpgk3j5r665pm03s7jp2s98apvc6fhp1njlr0rhi"; - name = "qtx11extras-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qtx11extras-everywhere-src-5.11.1.tar.xz"; + sha256 = "0rccpmhz48kq4xs441lj9mnwpbi6kxwl8y7dj7w7g5zvpv41kwmw"; + name = "qtx11extras-everywhere-src-5.11.1.tar.xz"; }; }; qtxmlpatterns = { - version = "5.11.0"; + version = "5.11.1"; src = fetchurl { - url = "${mirror}/official_releases/qt/5.11/5.11.0/submodules/qtxmlpatterns-everywhere-src-5.11.0.tar.xz"; - sha256 = "13nj2pa706sy874bqbv7y94ypicr4k09x6n2jyxkw93flb5pi8qr"; - name = "qtxmlpatterns-everywhere-src-5.11.0.tar.xz"; + url = "${mirror}/official_releases/qt/5.11/5.11.1/submodules/qtxmlpatterns-everywhere-src-5.11.1.tar.xz"; + sha256 = "0n5gacpni019i2872m4b1p5qaqibhszsdl3xhw3xsckvr0hf25v1"; + name = "qtxmlpatterns-everywhere-src-5.11.1.tar.xz"; }; }; } diff --git a/pkgs/development/libraries/vapoursynth/default.nix b/pkgs/development/libraries/vapoursynth/default.nix index e45337c8cf5d..7344f3a7e2bb 100644 --- a/pkgs/development/libraries/vapoursynth/default.nix +++ b/pkgs/development/libraries/vapoursynth/default.nix @@ -35,6 +35,8 @@ stdenv.mkDerivation rec { (optionalString (!imwriSupport) "--disable-imwri") ]; + enableParallelBuilding = true; + meta = with stdenv.lib; { description = "A video processing framework with the future in mind"; homepage = http://www.vapoursynth.com/; diff --git a/pkgs/development/node-packages/default-v10.nix b/pkgs/development/node-packages/default-v10.nix index 9bdba59b5357..d7df19066bb3 100644 --- a/pkgs/development/node-packages/default-v10.nix +++ b/pkgs/development/node-packages/default-v10.nix @@ -5,4 +5,20 @@ let inherit pkgs system nodejs; }; in -nodePackages +nodePackages // { + + pnpm = nodePackages.pnpm.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = let + pnpmLibPath = stdenv.lib.makeBinPath [ + nodejs.passthru.python + nodejs + ]; + in '' + for prog in $out/bin/*; do + wrapProgram "$prog" --prefix PATH : ${pnpmLibPath} + done + ''; + }; + +} diff --git a/pkgs/development/node-packages/node-packages-v10.json b/pkgs/development/node-packages/node-packages-v10.json index a298a6b95225..50cc105e7fff 100644 --- a/pkgs/development/node-packages/node-packages-v10.json +++ b/pkgs/development/node-packages/node-packages-v10.json @@ -2,4 +2,5 @@ "bower" , "coffee-script" , "grunt-cli" +, "pnpm" ] diff --git a/pkgs/development/node-packages/node-packages-v10.nix b/pkgs/development/node-packages/node-packages-v10.nix index 45b698320431..30b63e5ca4da 100644 --- a/pkgs/development/node-packages/node-packages-v10.nix +++ b/pkgs/development/node-packages/node-packages-v10.nix @@ -210,4 +210,21 @@ in production = true; bypassCache = true; }; + pnpm = nodeEnv.buildNodePackage { + name = "pnpm"; + packageName = "pnpm"; + version = "2.9.0"; + src = fetchurl { + url = "https://registry.npmjs.org/pnpm/-/pnpm-2.9.0.tgz"; + sha1 = "1c2f5ade46b87cc3b1f3b7c66eeb7b0f4df4d968"; + }; + buildInputs = globalBuildInputs; + meta = { + description = "Fast, disk space efficient package manager"; + homepage = https://pnpm.js.org/; + license = "MIT"; + }; + production = true; + bypassCache = true; + }; } \ No newline at end of file diff --git a/pkgs/development/node-packages/node-packages-v6.nix b/pkgs/development/node-packages/node-packages-v6.nix index bcbeeca306af..e183feb99720 100644 --- a/pkgs/development/node-packages/node-packages-v6.nix +++ b/pkgs/development/node-packages/node-packages-v6.nix @@ -112,13 +112,13 @@ let sha512 = "lyJ8sW1PbY3uwuvpOBZ9zMYKshMnQpXmeDHh8dj9j2nJm/xrW0FgB5gLSYOArj5X0IfaXnmhFoJnhS4KbqIMug=="; }; }; - "@types/node-10.5.0" = { + "@types/node-10.5.1" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "10.5.0"; + version = "10.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-10.5.0.tgz"; - sha512 = "baXPuqA7EVcBUpA5so2K26DTzk7NCWBc9xrPMu9PbUMwgusJRm9zJBPhiDmJVEcnTQ3aOxUZeuFHpd9qMYDNRg=="; + url = "https://registry.npmjs.org/@types/node/-/node-10.5.1.tgz"; + sha512 = "AFLl1IALIuyt6oK4AYZsgWVJ/5rnyzQWud7IebaZWWV3YmgtPZkQmYio9R5Ze/2pdd7XfqF5bP+hWS11mAKoOQ=="; }; }; "@types/node-8.10.20" = { @@ -778,6 +778,15 @@ let sha512 = "pgZos1vgOHDiC7gKNbZW8eKvCnNXARv2oqrGQT7Hzbq5Azp7aZG6DJzADnkuSq7RH6qkXp4J/m68yPX/2uBHyQ=="; }; }; + "ajv-6.5.2" = { + name = "ajv"; + packageName = "ajv"; + version = "6.5.2"; + src = fetchurl { + url = "https://registry.npmjs.org/ajv/-/ajv-6.5.2.tgz"; + sha512 = "hOs7GfvI6tUI1LfZddH82ky6mOMyTuY0mk7kE2pWpmhhUSkumzaTO5vbVwij39MdwPQWCV4Zv57Eo06NtL/GVA=="; + }; + }; "ajv-keywords-1.5.1" = { name = "ajv-keywords"; packageName = "ajv-keywords"; @@ -1867,13 +1876,13 @@ let sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3"; }; }; - "aws-sdk-2.265.1" = { + "aws-sdk-2.266.1" = { name = "aws-sdk"; packageName = "aws-sdk"; - version = "2.265.1"; + version = "2.266.1"; src = fetchurl { - url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.265.1.tgz"; - sha512 = "0xL9Lontx71wxwa+adZQGAWGmsXyrJbJmBzcCd6w+/zRAkd/mGX7T0V4mivPZK3QIiaKR8U/TZDmxAwnOryX3Q=="; + url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.266.1.tgz"; + sha512 = "b8lisloCETh0Fx0il540i+Hbgf3hyegQ6ezoJFggfc1HIbqzvIjVJYJhOsYl1fL1o+iMUaVU4ZH8cSyoMFR2Tw=="; }; }; "aws-sign-0.2.0" = { @@ -2686,13 +2695,13 @@ let sha1 = "c60917f26dc235661566c681061c303c2b28842b"; }; }; - "bcrypt-pbkdf-1.0.1" = { + "bcrypt-pbkdf-1.0.2" = { name = "bcrypt-pbkdf"; packageName = "bcrypt-pbkdf"; - version = "1.0.1"; + version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.1.tgz"; - sha1 = "63bc5dcb61331b92bc05fd528953c33462a06f8d"; + url = "https://registry.npmjs.org/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.2.tgz"; + sha1 = "a4301d389b6a43f9b67ff3ca11a3f6637e360e9e"; }; }; "bcryptjs-2.4.3" = { @@ -4396,15 +4405,6 @@ let sha512 = "9ZTaoBaePSCFvNlNGrsyI8ZVACP2svUtq0DkM7t4K2ClAa96sqOIRjAzDTc8zXzFt1cZR46rRzLTiHFSJ+Qw0g=="; }; }; - "charenc-0.0.2" = { - name = "charenc"; - packageName = "charenc"; - version = "0.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/charenc/-/charenc-0.0.2.tgz"; - sha1 = "c0a1d2f3a7092e03774bfa83f14c0fc5790a8667"; - }; - }; "check-error-1.0.2" = { name = "check-error"; packageName = "check-error"; @@ -5368,6 +5368,15 @@ let sha512 = "VlfT9F3V0v+jr4yxPc5gg9s62/fIVWsd2Bk2iD435um1NlGMYdVCq+MjcXnhYq2icNOizHr1kK+5TI6H0Hy0ag=="; }; }; + "commander-2.16.0" = { + name = "commander"; + packageName = "commander"; + version = "2.16.0"; + src = fetchurl { + url = "https://registry.npmjs.org/commander/-/commander-2.16.0.tgz"; + sha512 = "sVXqklSaotK9at437sFlFpyOcJonxe0yST/AG9DkQKUdIE6IqGIMv4SfAQSKaJbSdVEJYItASCrBiVQHq1HQew=="; + }; + }; "commander-2.6.0" = { name = "commander"; packageName = "commander"; @@ -6494,15 +6503,6 @@ let sha1 = "7eeeed9eddc95e22c189382e34624044a89a5a6d"; }; }; - "crypt-0.0.2" = { - name = "crypt"; - packageName = "crypt"; - version = "0.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/crypt/-/crypt-0.0.2.tgz"; - sha1 = "88d7ff7ec0dfb86f713dc87bbb42d044d3e6c41b"; - }; - }; "crypt3-0.2.0" = { name = "crypt3"; packageName = "crypt3"; @@ -8997,6 +8997,15 @@ let sha512 = "bT3/1x1EbZB7phzYu7vCr1v3ONuzDtX8WjuM9c0iYxe+cq+pwcKEoQjl7zd3RpC6YOLgnSy3cTN58M2jcoPDIQ=="; }; }; + "eslint-5.0.1" = { + name = "eslint"; + packageName = "eslint"; + version = "5.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/eslint/-/eslint-5.0.1.tgz"; + sha512 = "D5nG2rErquLUstgUaxJlWB5+gu+U/3VDY0fk/Iuq8y9CUFy/7Y6oF4N2cR1tV8knzQvciIbfqfohd359xTLIKQ=="; + }; + }; "eslint-plugin-no-unsafe-innerhtml-1.0.16" = { name = "eslint-plugin-no-unsafe-innerhtml"; packageName = "eslint-plugin-no-unsafe-innerhtml"; @@ -16811,15 +16820,6 @@ let sha1 = "8b3aac588b8a66e4975e3cdea67f7bb329601fac"; }; }; - "md5-2.2.1" = { - name = "md5"; - packageName = "md5"; - version = "2.2.1"; - src = fetchurl { - url = "https://registry.npmjs.org/md5/-/md5-2.2.1.tgz"; - sha1 = "53ab38d5fe3c8891ba465329ea23fac0540126f9"; - }; - }; "md5.js-1.3.4" = { name = "md5.js"; packageName = "md5.js"; @@ -22191,13 +22191,13 @@ let sha1 = "01ba954276052b783900e63d6118d8fcf3875d7f"; }; }; - "raven-2.6.3" = { - name = "raven"; - packageName = "raven"; - version = "2.6.3"; + "raven-js-3.26.3" = { + name = "raven-js"; + packageName = "raven-js"; + version = "3.26.3"; src = fetchurl { - url = "https://registry.npmjs.org/raven/-/raven-2.6.3.tgz"; - sha512 = "bKre7qlDW+y1+G2bUtCuntdDYc8o5v1T233t0vmJfbj8ttGOgLrGRlYB8saelVMW9KUAJNLrhFkAKOwFWFJonw=="; + url = "https://registry.npmjs.org/raven-js/-/raven-js-3.26.3.tgz"; + sha512 = "VPAsPfK73A9VPcJx5X/kt0GxOqUGpGDM8vdzsYNQXMhYemyZGiW1JX1AI+f4jxm37Apijj6VVtCyJcYFz3ocSQ=="; }; }; "raw-body-0.0.3" = { @@ -24558,13 +24558,13 @@ let sha512 = "FL1b58BDrqS3A11lJ0zEdnJ3UOKqVxawAkF3k7F0CVN7VQ34aZrV+G8BZ1WC9ZL7NyrwsW0oviwsWDgRuVYtJg=="; }; }; - "snyk-1.87.0" = { + "snyk-1.88.0" = { name = "snyk"; packageName = "snyk"; - version = "1.87.0"; + version = "1.88.0"; src = fetchurl { - url = "https://registry.npmjs.org/snyk/-/snyk-1.87.0.tgz"; - sha1 = "8d35801eddaca1ffc3ecc2da1c7ae2dab9bf97d3"; + url = "https://registry.npmjs.org/snyk/-/snyk-1.88.0.tgz"; + sha1 = "10d171427de94f6474d64fdc524d6f87c0ab069e"; }; }; "snyk-config-2.1.0" = { @@ -24576,13 +24576,13 @@ let sha512 = "D1Xz1pZa9lwA9AHogmAigyJGo/iuEGH+rcPB77mFsneVfnuiK9c6IjnsHbEBUf1cePtZvWdGBjs6e75Cvc2AMg=="; }; }; - "snyk-docker-plugin-1.10.2" = { + "snyk-docker-plugin-1.10.3" = { name = "snyk-docker-plugin"; packageName = "snyk-docker-plugin"; - version = "1.10.2"; + version = "1.10.3"; src = fetchurl { - url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.10.2.tgz"; - sha512 = "/pHIhyYhEOUYogn8aXPSt/VMHIxobmNcuU04Jze+NWW/B93emc7i8zxvTgjl4JIsx22sVfnLBSbjDMntk4+X4A=="; + url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.10.3.tgz"; + sha512 = "nIw6zS705SiQLEhBwoO2qsJ3lVN1DZ48tyMgqhlr5f5GuOrwUJ0ivUK5HQUI79xA6pF7tU18495OlbsKuEHUOw=="; }; }; "snyk-go-plugin-1.5.1" = { @@ -28393,15 +28393,6 @@ let sha1 = "67e2e863797215530dff318e5bf9dcebfd47b21a"; }; }; - "uuid-3.0.0" = { - name = "uuid"; - packageName = "uuid"; - version = "3.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/uuid/-/uuid-3.0.0.tgz"; - sha1 = "6728fc0459c450d796a99c31837569bdf672d728"; - }; - }; "uuid-3.0.1" = { name = "uuid"; packageName = "uuid"; @@ -28420,13 +28411,13 @@ let sha512 = "DIWtzUkw04M4k3bf1IcpS2tngXEL26YUD2M0tMDUpnUrz2hgzUBlD55a4FjdLGPvfHxS6uluGWvaVEqgBcVa+g=="; }; }; - "uuid-3.3.0" = { + "uuid-3.3.2" = { name = "uuid"; packageName = "uuid"; - version = "3.3.0"; + version = "3.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/uuid/-/uuid-3.3.0.tgz"; - sha512 = "ijO9N2xY/YaOqQ5yz5c4sy2ZjWmA6AR6zASb/gdpeKZ8+948CxwfMW9RrKVk5may6ev8c0/Xguu32e2Llelpqw=="; + url = "https://registry.npmjs.org/uuid/-/uuid-3.3.2.tgz"; + sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA=="; }; }; "uws-9.14.0" = { @@ -28654,13 +28645,13 @@ let sha1 = "2fb1decd4c466aa88b0f9341af33dc1aff2478d5"; }; }; - "videostream-2.4.2" = { + "videostream-2.4.3" = { name = "videostream"; packageName = "videostream"; - version = "2.4.2"; + version = "2.4.3"; src = fetchurl { - url = "https://registry.npmjs.org/videostream/-/videostream-2.4.2.tgz"; - sha1 = "9560254d00fabdc40955c1a3c282057d8db1d115"; + url = "https://registry.npmjs.org/videostream/-/videostream-2.4.3.tgz"; + sha512 = "8AkDc1SBg3kw8+hHImYKtSamjKfJxMHuCXIcXvCFOAWGU7IcW41hxx7K7bU/tC6zWEck/tgB1rXLxf6o5Pn79Q=="; }; }; "vinyl-0.4.6" = { @@ -29915,13 +29906,13 @@ let sha512 = "Rjp+lMYQOWtgqojx1dEWorjCofi1YN7AoFvYV7b1gx/7dAAeuI4kN5SZiEvr0ZmsZTOpDRcCqrpI10L31tFkBw=="; }; }; - "yargs-12.0.0" = { + "yargs-12.0.1" = { name = "yargs"; packageName = "yargs"; - version = "12.0.0"; + version = "12.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/yargs/-/yargs-12.0.0.tgz"; - sha512 = "wxkoyGB8193wsR6UhjzVQ76VgXx5wLJvGsBd70tuLabLFIDx/Pq9+GFGY3aoWZ8zDMK6KrmdjlUf/h/SMv+eOA=="; + url = "https://registry.npmjs.org/yargs/-/yargs-12.0.1.tgz"; + sha512 = "B0vRAp1hRX4jgIOWFtjfNjd9OA9RWYZ6tqGA9/I/IrTMsxmKvtWy+ersM+jzpQqbC3YfLzeABPdeTgcJ9eu1qQ=="; }; }; "yargs-3.10.0" = { @@ -29978,13 +29969,13 @@ let sha1 = "52acc23feecac34042078ee78c0c007f5085db4c"; }; }; - "yargs-parser-10.0.0" = { + "yargs-parser-10.1.0" = { name = "yargs-parser"; packageName = "yargs-parser"; - version = "10.0.0"; + version = "10.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-10.0.0.tgz"; - sha512 = "+DHejWujTVYeMHLff8U96rLc4uE4Emncoftvn5AjhB1Jw1pWxLzgBUT/WYbPrHmy6YPEBTZQx5myHhVcuuu64g=="; + url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-10.1.0.tgz"; + sha512 = "VCIyR1wJoEBZUqk5PA+oOBF6ypbwh5aNB3I50guxAL/quggdfs4TtNHQrSazFA3fYZ+tEqfs0zIGlv0c/rgjbQ=="; }; }; "yargs-parser-4.2.1" = { @@ -30208,7 +30199,7 @@ in sources."chalk-1.1.3" sources."chmodr-1.0.2" sources."colors-1.3.0" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."convert-source-map-1.5.1" sources."core-js-2.5.7" @@ -30320,7 +30311,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."binary-0.3.0" sources."brace-expansion-1.1.11" sources."buffers-0.1.1" @@ -30329,7 +30320,7 @@ in sources."chromium-pickle-js-0.2.0" sources."co-4.6.0" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."core-util-is-1.0.2" sources."cuint-0.2.2" @@ -30400,7 +30391,7 @@ in sources."traverse-0.3.9" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."verror-1.10.0" sources."wrappy-1.0.2" ]; @@ -30558,7 +30549,7 @@ in ]; }) sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" (sources."bl-1.1.2" // { dependencies = [ sources."readable-stream-2.0.6" @@ -30634,7 +30625,7 @@ in sources."har-schema-2.0.0" (sources."har-validator-2.0.6" // { dependencies = [ - sources."commander-2.15.1" + sources."commander-2.16.0" ]; }) sources."has-ansi-2.0.0" @@ -30801,7 +30792,7 @@ in sources."async-0.2.10" ]; }) - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validator-5.2.0" (sources."verror-1.10.0" // { dependencies = [ @@ -31219,7 +31210,7 @@ in sources."codepage-1.4.0" sources."colour-0.7.1" sources."combined-stream-0.0.7" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."compact2string-1.4.0" sources."concat-map-0.0.1" (sources."concat-stream-1.6.2" // { @@ -31586,7 +31577,7 @@ in sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."colors-1.3.0" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."debug-3.1.0" sources."escape-string-regexp-1.0.5" sources."follow-redirects-1.5.0" @@ -31689,7 +31680,7 @@ in sources."aws4-1.7.0" sources."balanced-match-1.0.0" sources."base64-js-1.3.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."big-integer-1.6.32" sources."block-stream-0.0.9" sources."bn.js-4.11.8" @@ -31733,7 +31724,7 @@ in sources."code-point-at-1.1.0" sources."combine-source-map-0.8.0" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" (sources."compressible-2.0.14" // { dependencies = [ sources."mime-db-1.34.0" @@ -31912,7 +31903,7 @@ in sources."uuid-2.0.3" ]; }) - sources."uuid-3.3.0" + sources."uuid-3.3.2" ]; }) sources."interpret-1.1.0" @@ -32066,7 +32057,7 @@ in (sources."request-2.79.0" // { dependencies = [ sources."qs-6.3.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" ]; }) sources."resolve-1.8.1" @@ -32212,7 +32203,7 @@ in sources."buffer-from-0.1.2" sources."builtins-1.0.3" sources."chalk-1.1.3" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."core-util-is-1.0.2" sources."cross-spawn-4.0.2" @@ -32394,7 +32385,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bencode-1.0.0" (sources."bitfield-rle-2.1.0" // { dependencies = [ @@ -32745,7 +32736,7 @@ in sources."util-deprecate-1.0.2" sources."utile-0.3.0" sources."utp-native-1.7.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."varint-3.0.1" sources."verror-1.10.0" (sources."winston-2.1.1" // { @@ -33114,11 +33105,11 @@ in sources."assert-plus-1.0.0" sources."async-2.6.1" sources."asynckit-0.4.0" - sources."aws-sdk-2.265.1" + sources."aws-sdk-2.266.1" sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."base64-js-1.3.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."buffer-4.9.1" sources."caseless-0.12.0" sources."co-4.6.0" @@ -33230,7 +33221,7 @@ in sources."aws-sign2-0.6.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."binary-extensions-1.11.0" sources."binstall-1.2.0" sources."block-stream-0.0.9" @@ -33247,7 +33238,7 @@ in sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."core-util-is-1.0.2" sources."cross-spawn-4.0.0" @@ -33410,7 +33401,7 @@ in sources."tunnel-agent-0.4.3" sources."tweetnacl-0.14.5" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" (sources."verror-1.10.0" // { dependencies = [ sources."assert-plus-1.0.0" @@ -33678,7 +33669,7 @@ in dependencies = [ sources."acorn-5.7.1" sources."acorn-jsx-4.1.1" - sources."ajv-6.5.1" + sources."ajv-6.5.2" sources."ajv-keywords-3.2.0" sources."ansi-escapes-3.1.0" sources."ansi-regex-2.1.1" @@ -33841,20 +33832,16 @@ in eslint_d = nodeEnv.buildNodePackage { name = "eslint_d"; packageName = "eslint_d"; - version = "5.3.1"; + version = "6.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint_d/-/eslint_d-5.3.1.tgz"; - sha512 = "nD7fk0BxVUHDP+15SuRwDE9JtAJ3BGfqCtiCvCRsZtNRLJ8W+HaOaot06Zk9N4lgUoZTTDFDwlloy4iQt2fMOg=="; + url = "https://registry.npmjs.org/eslint_d/-/eslint_d-6.0.0.tgz"; + sha512 = "NRn6C7G0HzA2hEFlLzD+M/m1eIeTtmxxO45n7Pp+Nk/gBp8mfIXlE8wSLdePt/g0Sl7BhuU/hY/E+kD/8P5LeQ=="; }; dependencies = [ sources."acorn-5.7.1" - (sources."acorn-jsx-3.0.1" // { - dependencies = [ - sources."acorn-3.3.0" - ]; - }) - sources."ajv-5.5.2" - sources."ajv-keywords-2.1.1" + sources."acorn-jsx-4.1.1" + sources."ajv-6.5.2" + sources."ajv-keywords-3.2.0" sources."ansi-escapes-3.1.0" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" @@ -33865,7 +33852,6 @@ in sources."babel-code-frame-6.26.0" sources."balanced-match-1.0.0" sources."brace-expansion-1.1.11" - sources."buffer-from-1.1.0" sources."caller-path-0.1.0" sources."callsites-0.2.0" (sources."chalk-1.1.3" // { @@ -33877,19 +33863,19 @@ in sources."circular-json-0.3.3" sources."cli-cursor-2.1.0" sources."cli-width-2.2.0" - sources."co-4.6.0" sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."concat-map-0.0.1" - sources."concat-stream-1.6.2" - sources."core-util-is-1.0.2" - sources."cross-spawn-5.1.0" + sources."cross-spawn-6.0.5" sources."debug-3.1.0" sources."deep-is-0.1.3" + sources."define-properties-1.1.2" sources."del-2.2.2" sources."doctrine-2.1.0" + sources."es-abstract-1.12.0" + sources."es-to-primitive-1.1.1" sources."escape-string-regexp-1.0.5" - (sources."eslint-4.19.1" // { + (sources."eslint-5.0.1" // { dependencies = [ sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" @@ -33898,35 +33884,39 @@ in sources."supports-color-5.4.0" ]; }) - sources."eslint-scope-3.7.1" + sources."eslint-scope-4.0.0" sources."eslint-visitor-keys-1.0.0" - sources."espree-3.5.4" + sources."espree-4.0.0" sources."esprima-4.0.0" sources."esquery-1.0.1" sources."esrecurse-4.2.1" sources."estraverse-4.2.0" sources."esutils-2.0.2" sources."external-editor-2.2.0" - sources."fast-deep-equal-1.1.0" + sources."fast-deep-equal-2.0.1" sources."fast-json-stable-stringify-2.0.0" sources."fast-levenshtein-2.0.6" sources."figures-2.0.0" sources."file-entry-cache-2.0.0" sources."flat-cache-1.3.0" + sources."foreach-2.0.5" sources."fs.realpath-1.0.0" + sources."function-bind-1.1.1" sources."functional-red-black-tree-1.0.1" sources."glob-7.1.2" sources."globals-11.7.0" sources."globby-5.0.0" sources."graceful-fs-4.1.11" + sources."has-1.0.3" sources."has-ansi-2.0.0" sources."has-flag-3.0.0" + sources."has-symbols-1.0.0" sources."iconv-lite-0.4.23" sources."ignore-3.3.10" sources."imurmurhash-0.1.4" sources."inflight-1.0.6" sources."inherits-2.0.3" - (sources."inquirer-3.3.0" // { + (sources."inquirer-5.2.0" // { dependencies = [ sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" @@ -33935,21 +33925,23 @@ in sources."supports-color-5.4.0" ]; }) + sources."is-callable-1.1.3" + sources."is-date-object-1.0.1" sources."is-fullwidth-code-point-2.0.0" sources."is-path-cwd-1.0.0" sources."is-path-in-cwd-1.0.1" sources."is-path-inside-1.0.1" sources."is-promise-2.1.0" + sources."is-regex-1.0.4" sources."is-resolvable-1.1.0" - sources."isarray-1.0.0" + sources."is-symbol-1.0.1" sources."isexe-2.0.0" sources."js-tokens-3.0.2" sources."js-yaml-3.12.0" - sources."json-schema-traverse-0.3.1" + sources."json-schema-traverse-0.4.1" sources."json-stable-stringify-without-jsonify-1.0.1" sources."levn-0.3.0" sources."lodash-4.17.10" - sources."lru-cache-4.1.3" sources."mimic-fn-1.2.0" sources."minimatch-3.0.4" sources."minimist-0.0.8" @@ -33958,23 +33950,25 @@ in sources."mute-stream-0.0.7" sources."nanolru-1.0.0" sources."natural-compare-1.4.0" + sources."nice-try-1.0.4" sources."object-assign-4.1.1" + sources."object-keys-1.0.12" sources."once-1.4.0" sources."onetime-2.0.1" sources."optionator-0.8.2" sources."os-tmpdir-1.0.2" sources."path-is-absolute-1.0.1" sources."path-is-inside-1.0.2" + sources."path-key-2.0.1" sources."path-parse-1.0.5" sources."pify-2.3.0" sources."pinkie-2.0.4" sources."pinkie-promise-2.0.1" sources."pluralize-7.0.0" sources."prelude-ls-1.1.2" - sources."process-nextick-args-2.0.0" sources."progress-2.0.0" - sources."pseudomap-1.0.2" - sources."readable-stream-2.3.6" + sources."punycode-2.1.1" + sources."regexp.prototype.flags-1.2.0" sources."regexpp-1.1.0" sources."require-uncached-1.0.3" sources."resolve-1.8.1" @@ -33982,9 +33976,7 @@ in sources."restore-cursor-2.0.0" sources."rimraf-2.6.2" sources."run-async-2.3.0" - sources."rx-lite-4.0.8" - sources."rx-lite-aggregates-4.0.8" - sources."safe-buffer-5.1.2" + sources."rxjs-5.5.11" sources."safer-buffer-2.1.2" sources."semver-5.5.0" sources."shebang-command-1.2.0" @@ -33998,7 +33990,7 @@ in sources."strip-ansi-4.0.0" ]; }) - sources."string_decoder-1.1.1" + sources."string.prototype.matchall-2.0.0" sources."strip-ansi-3.0.1" sources."strip-json-comments-2.0.1" (sources."supports-color-3.2.3" // { @@ -34006,7 +33998,8 @@ in sources."has-flag-1.0.0" ]; }) - (sources."table-4.0.2" // { + sources."symbol-observable-1.0.1" + (sources."table-4.0.3" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.1" @@ -34017,13 +34010,11 @@ in sources."through-2.3.8" sources."tmp-0.0.33" sources."type-check-0.3.2" - sources."typedarray-0.0.6" - sources."util-deprecate-1.0.2" + sources."uri-js-4.2.2" sources."which-1.3.1" sources."wordwrap-1.0.0" sources."wrappy-1.0.2" sources."write-0.2.1" - sources."yallist-2.1.2" ]; buildInputs = globalBuildInputs; meta = { @@ -34069,7 +34060,7 @@ in sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" sources."aws4-1.7.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."buffer-from-1.1.0" sources."builtin-modules-1.1.1" sources."camelcase-2.1.1" @@ -34217,7 +34208,7 @@ in sources."tweetnacl-0.14.5" sources."typedarray-0.0.6" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-license-3.0.3" sources."verror-1.10.0" sources."which-1.3.1" @@ -35413,7 +35404,7 @@ in sources."untildify-3.0.3" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" sources."websocket-driver-0.7.0" sources."websocket-extensions-0.1.3" @@ -35632,7 +35623,7 @@ in sources."check-error-1.0.2" sources."color-convert-1.9.2" sources."color-name-1.1.1" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."deep-eql-3.0.1" sources."deep-equal-1.0.1" @@ -35833,7 +35824,7 @@ in dependencies = [ sources."abbrev-1.1.1" sources."bluebird-3.5.1" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."config-chain-1.1.11" sources."editorconfig-0.13.3" sources."ini-1.3.5" @@ -35996,7 +35987,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."basic-auth-2.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."body-parser-1.18.3" sources."boxen-1.3.0" sources."bytes-3.0.0" @@ -36213,7 +36204,7 @@ in sources."update-notifier-2.5.0" sources."url-parse-lax-1.0.0" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" sources."verror-1.10.0" sources."which-1.3.1" @@ -36320,7 +36311,7 @@ in }) sources."base64-arraybuffer-0.1.5" sources."base64id-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."better-assert-1.0.2" sources."binary-extensions-1.11.0" sources."bitsyntax-0.0.4" @@ -36373,7 +36364,7 @@ in sources."colors-1.3.0" sources."combine-lists-1.0.1" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."component-bind-1.0.0" sources."component-emitter-1.2.1" sources."component-inherit-0.0.3" @@ -36856,7 +36847,7 @@ in }) sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."uws-9.14.0" sources."verror-1.10.0" sources."void-elements-2.0.1" @@ -37159,7 +37150,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."boolbase-1.0.0" sources."boom-4.3.1" sources."brace-expansion-1.1.11" @@ -37352,7 +37343,7 @@ in sources."async-0.9.2" ]; }) - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."verror-1.10.0" sources."webidl-conversions-2.0.1" sources."whatwg-url-compat-0.6.5" @@ -37723,7 +37714,7 @@ in (sources."temp-write-3.4.0" // { dependencies = [ sources."pify-3.0.0" - sources."uuid-3.3.0" + sources."uuid-3.3.2" ]; }) sources."tempfile-1.1.1" @@ -37818,7 +37809,7 @@ in sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" sources."aws4-1.7.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."caseless-0.12.0" sources."co-4.6.0" sources."combined-stream-1.0.6" @@ -37865,7 +37856,7 @@ in sources."tough-cookie-2.3.4" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."verror-1.10.0" ]; buildInputs = globalBuildInputs; @@ -38047,7 +38038,7 @@ in sources."unpipe-1.0.0" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.0" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" sources."websocket-driver-0.7.0" sources."websocket-extensions-0.1.3" @@ -38091,7 +38082,7 @@ in sources."balanced-match-1.0.0" sources."base64-arraybuffer-0.1.5" sources."base64id-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."better-assert-1.0.2" sources."binary-extensions-1.11.0" sources."blob-0.0.4" @@ -38308,7 +38299,7 @@ in sources."unpipe-1.0.0" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" sources."verror-1.10.0" sources."ws-3.3.3" @@ -38432,7 +38423,7 @@ in sources."define-property-1.0.0" ]; }) - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."beeper-1.1.1" sources."boom-2.10.1" sources."brace-expansion-1.1.11" @@ -39050,7 +39041,7 @@ in sources."use-3.1.0" sources."user-home-1.1.1" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."v8flags-2.1.1" sources."value-or-function-3.0.0" (sources."verror-1.10.0" // { @@ -39145,7 +39136,7 @@ in sources."argparse-1.0.10" sources."asynckit-0.4.0" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."component-emitter-1.2.1" sources."cookiejar-2.1.2" sources."core-util-is-1.0.2" @@ -39229,7 +39220,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."base64-js-1.2.3" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."buffer-from-1.1.0" sources."builtin-modules-1.1.1" sources."builtins-1.0.3" @@ -39344,7 +39335,7 @@ in sources."typedarray-0.0.6" sources."uid-number-0.0.5" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-license-3.0.3" sources."validate-npm-package-name-3.0.0" sources."verror-1.10.0" @@ -39382,7 +39373,7 @@ in sources."aws-sign2-0.6.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."block-stream-0.0.9" sources."boom-2.10.1" sources."brace-expansion-1.1.11" @@ -39481,7 +39472,7 @@ in sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" (sources."verror-1.10.0" // { dependencies = [ sources."assert-plus-1.0.0" @@ -39543,7 +39534,7 @@ in sources."aws4-1.7.0" sources."balanced-match-1.0.0" sources."base64-js-0.0.8" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."biased-opener-0.2.8" sources."big-integer-1.6.32" sources."block-stream-0.0.9" @@ -39775,7 +39766,7 @@ in sources."untildify-2.1.0" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."v8-debug-1.0.1" sources."v8-profiler-5.7.0" sources."validate-npm-package-license-3.0.3" @@ -40289,7 +40280,7 @@ in sources."balanced-match-1.0.0" sources."basic-auth-2.0.0" sources."bcrypt-1.0.3" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bcryptjs-2.4.3" sources."bl-1.2.2" sources."block-stream-0.0.9" @@ -40644,7 +40635,7 @@ in sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" sources."uue-3.1.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" sources."verror-1.10.0" (sources."websocket-stream-5.1.2" // { @@ -40843,7 +40834,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."block-stream-0.0.9" sources."brace-expansion-1.1.11" sources."caseless-0.12.0" @@ -40970,7 +40961,7 @@ in sources."underscore-1.4.4" sources."underscore.string-2.3.3" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."verror-1.10.0" sources."walk-2.3.13" sources."wide-align-1.1.3" @@ -41015,7 +41006,7 @@ in sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."colors-1.0.3" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."configstore-3.1.2" sources."create-error-class-3.0.2" sources."cross-spawn-5.1.0" @@ -41337,7 +41328,7 @@ in sources."aws4-1.7.0" sources."babybird-0.0.1" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" (sources."bl-1.2.2" // { dependencies = [ sources."isarray-1.0.0" @@ -41624,7 +41615,7 @@ in sources."unpipe-1.0.0" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-license-3.0.3" sources."vary-1.1.2" sources."verror-1.10.0" @@ -42345,14 +42336,14 @@ in sources."async-2.6.1" sources."aws-sign2-0.6.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bl-1.0.3" sources."boom-2.10.1" sources."brace-expansion-1.1.11" sources."caseless-0.11.0" sources."chalk-1.1.3" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."concat-stream-1.5.0" sources."core-util-is-1.0.2" @@ -42981,7 +42972,7 @@ in sources."babel-types-6.26.0" sources."babylon-6.18.0" sources."basic-auth-2.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bindings-1.2.1" sources."bl-1.2.2" sources."body-parser-1.18.3" @@ -43001,7 +42992,7 @@ in sources."co-4.6.0" sources."code-point-at-1.1.0" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."console-control-strings-1.1.0" sources."constantinople-3.1.2" sources."content-disposition-0.5.2" @@ -43238,7 +43229,7 @@ in sources."unzip-response-1.0.2" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" (sources."verror-1.10.0" // { dependencies = [ @@ -43283,7 +43274,7 @@ in sources."balanced-match-1.0.0" sources."base62-0.1.1" sources."brace-expansion-1.1.11" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."commoner-0.10.8" sources."concat-map-0.0.1" sources."defined-1.0.0" @@ -43402,7 +43393,7 @@ in sources."aws-sdk-1.18.0" sources."aws-sign2-0.7.0" sources."aws4-1.7.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."buffer-crc32-0.2.1" sources."bytes-0.2.1" sources."caseless-0.12.0" @@ -43505,7 +43496,7 @@ in sources."tweetnacl-0.14.5" sources."uid2-0.0.3" sources."util-0.4.9" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."verror-1.10.0" sources."xml2js-0.2.4" sources."xmlbuilder-0.4.2" @@ -43654,7 +43645,7 @@ in sources."base64-arraybuffer-0.1.2" sources."base64id-0.1.0" sources."bcrypt-nodejs-0.0.3" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."better-assert-1.0.2" sources."blob-0.0.2" sources."body-parser-1.18.2" @@ -43664,7 +43655,7 @@ in sources."cheerio-0.17.0" sources."co-4.6.0" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."component-bind-1.0.0" sources."component-emitter-1.1.2" sources."component-inherit-0.0.3" @@ -43834,7 +43825,7 @@ in sources."unpipe-1.0.0" sources."utf8-2.0.0" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" sources."verror-1.10.0" (sources."ws-0.4.31" // { @@ -43877,7 +43868,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" (sources."body-parser-1.18.3" // { dependencies = [ sources."bytes-3.0.0" @@ -43895,7 +43886,7 @@ in sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" (sources."compressible-2.0.14" // { dependencies = [ sources."mime-db-1.34.0" @@ -44084,7 +44075,7 @@ in sources."unpipe-1.0.0" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.0" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."vary-1.1.2" sources."verror-1.10.0" sources."wordwrap-0.0.3" @@ -44596,7 +44587,7 @@ in sources."asynckit-0.4.0" sources."aws-sign2-0.6.0" sources."aws4-1.7.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."boom-2.10.1" sources."camelcase-1.2.1" sources."caseless-0.12.0" @@ -44610,7 +44601,7 @@ in sources."co-4.6.0" sources."colors-1.1.2" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."core-util-is-1.0.2" sources."cryptiles-2.0.5" sources."cycle-1.0.3" @@ -45016,10 +45007,10 @@ in ungit = nodeEnv.buildNodePackage { name = "ungit"; packageName = "ungit"; - version = "1.4.26"; + version = "1.4.28"; src = fetchurl { - url = "https://registry.npmjs.org/ungit/-/ungit-1.4.26.tgz"; - sha512 = "hA1Sr7zi6v+RhcJVC4cOySorCh21+Xdw627ewEkLlRXIWVjUnwdj8cEr0gj6apL7E+lqso3NwhZS/GliMyeL2g=="; + url = "https://registry.npmjs.org/ungit/-/ungit-1.4.28.tgz"; + sha512 = "rXb0l9jqiIWeKvrlUnK0/SYOmOKHe3nw1AV/VWqJERMkaoI5XJ1Pfu4pDnqWEtbSLVLE9dvffeleqISO6qK4BQ=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -45048,7 +45039,7 @@ in sources."balanced-match-1.0.0" sources."base64-arraybuffer-0.1.5" sources."base64id-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."better-assert-1.0.2" sources."blob-0.0.4" sources."bluebird-3.5.1" @@ -45062,7 +45053,6 @@ in sources."callsite-1.0.0" sources."camelcase-4.1.0" sources."caseless-0.12.0" - sources."charenc-0.0.2" (sources."cliui-4.1.0" // { dependencies = [ sources."ansi-regex-3.0.0" @@ -45102,11 +45092,10 @@ in sources."crc-3.4.4" sources."cross-spawn-5.1.0" sources."crossroads-0.12.2" - sources."crypt-0.0.2" sources."cycle-1.0.3" sources."dashdash-1.14.1" sources."debug-2.6.9" - sources."decamelize-1.2.0" + sources."decamelize-2.0.0" sources."deep-extend-0.6.0" sources."delayed-stream-0.0.5" sources."delegates-1.0.0" @@ -45163,7 +45152,7 @@ in sources."statuses-1.4.0" ]; }) - sources."find-up-2.1.0" + sources."find-up-3.0.0" sources."forever-agent-0.6.1" (sources."form-data-0.1.3" // { dependencies = [ @@ -45208,11 +45197,11 @@ in sources."invert-kv-1.0.0" sources."ipaddr.js-1.6.0" sources."is-arrayish-0.3.2" - sources."is-buffer-1.1.6" sources."is-builtin-module-1.0.0" sources."is-fullwidth-code-point-1.0.0" sources."is-stream-1.1.0" sources."is-typedarray-1.0.0" + sources."is-wsl-1.1.0" sources."isarray-0.0.1" sources."isexe-2.0.0" sources."isstream-0.1.2" @@ -45234,11 +45223,10 @@ in }) sources."knockout-3.5.0-rc" sources."lcid-1.0.0" - sources."locate-path-2.0.0" + sources."locate-path-3.0.0" sources."locks-0.2.2" sources."lodash-4.17.10" sources."lru-cache-4.1.3" - sources."md5-2.2.1" sources."media-typer-0.3.0" sources."mem-1.1.0" (sources."memorystore-1.6.0" // { @@ -45275,15 +45263,15 @@ in sources."on-finished-2.3.0" sources."on-headers-1.0.1" sources."once-1.4.0" - sources."open-0.0.5" + sources."opn-5.3.0" sources."os-homedir-1.0.2" sources."os-locale-2.1.0" sources."os-tmpdir-1.0.2" sources."osenv-0.1.5" sources."p-finally-1.0.0" - sources."p-limit-1.3.0" - sources."p-locate-2.0.0" - sources."p-try-1.0.0" + sources."p-limit-2.0.0" + sources."p-locate-3.0.0" + sources."p-try-2.0.0" sources."parseqs-0.0.5" sources."parseuri-0.0.5" sources."parseurl-1.3.2" @@ -45303,11 +45291,7 @@ in sources."qs-6.5.2" sources."random-bytes-1.0.0" sources."range-parser-1.2.0" - (sources."raven-2.6.3" // { - dependencies = [ - sources."uuid-3.0.0" - ]; - }) + sources."raven-js-3.26.3" sources."raw-body-2.3.3" (sources."rc-1.2.8" // { dependencies = [ @@ -45398,7 +45382,6 @@ in sources."rimraf-2.2.8" ]; }) - sources."timed-out-4.0.1" sources."to-array-0.1.4" sources."tough-cookie-2.3.4" sources."tunnel-agent-0.6.0" @@ -45412,7 +45395,7 @@ in sources."unpipe-1.0.0" sources."util-deprecate-1.0.2" sources."utils-merge-1.0.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-license-3.0.3" sources."validate-npm-package-name-3.0.0" sources."vary-1.1.2" @@ -45430,9 +45413,10 @@ in sources."wrappy-1.0.2" sources."ws-3.3.3" sources."xmlhttprequest-ssl-1.5.5" + sources."xregexp-4.0.0" sources."y18n-4.0.0" sources."yallist-2.1.2" - (sources."yargs-12.0.0" // { + (sources."yargs-12.0.1" // { dependencies = [ sources."ansi-regex-3.0.0" sources."is-fullwidth-code-point-2.0.0" @@ -45440,7 +45424,7 @@ in sources."strip-ansi-4.0.0" ]; }) - sources."yargs-parser-10.0.0" + sources."yargs-parser-10.1.0" sources."yeast-0.1.2" ]; buildInputs = globalBuildInputs; @@ -45487,7 +45471,7 @@ in sources."aws4-1.7.0" sources."balanced-match-1.0.0" sources."base64-js-0.0.8" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bl-1.2.2" sources."bluebird-3.5.1" sources."brace-expansion-1.1.11" @@ -45521,7 +45505,7 @@ in sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."config-chain-1.1.11" sources."consolidate-0.14.5" @@ -45732,7 +45716,7 @@ in sources."url-to-options-1.0.1" sources."user-home-2.0.0" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-name-3.0.0" sources."verror-1.10.0" sources."ware-1.3.0" @@ -45773,14 +45757,14 @@ in sources."async-2.6.1" sources."aws-sign2-0.6.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bl-1.0.3" sources."boom-2.10.1" sources."brace-expansion-1.1.11" sources."caseless-0.11.0" sources."chalk-1.1.3" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."concat-stream-1.5.0" (sources."config-chain-1.1.11" // { @@ -45922,10 +45906,10 @@ in webpack = nodeEnv.buildNodePackage { name = "webpack"; packageName = "webpack"; - version = "4.13.0"; + version = "4.14.0"; src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-4.13.0.tgz"; - sha512 = "3KMX0uPjJ4cXjl9V/AY+goRQPs7jtKRQn3hhNOG6s8Sx3mmGCQUjQJvjVoGNABVo5svgujIcSLBN8g62EzqIMA=="; + url = "https://registry.npmjs.org/webpack/-/webpack-4.14.0.tgz"; + sha512 = "CgZPUwobJbQlZqpylDNtEazZLfNnGuyFmpk1dHIP2kFchtyMWB+W2wBKPImSnSQ2rbX/WZMKiQax+SZmlUXuQQ=="; }; dependencies = [ sources."@webassemblyjs/ast-1.5.12" @@ -45948,7 +45932,7 @@ in sources."@webassemblyjs/wast-printer-1.5.12" sources."acorn-5.7.1" sources."acorn-dynamic-import-3.0.0" - sources."ajv-6.5.1" + sources."ajv-6.5.2" sources."ajv-keywords-3.2.0" sources."anymatch-2.0.0" sources."aproba-1.2.0" @@ -46658,7 +46642,7 @@ in }) sources."ut_pex-1.2.1" sources."util-deprecate-1.0.2" - (sources."videostream-2.4.2" // { + (sources."videostream-2.4.3" // { dependencies = [ sources."pump-1.0.3" ]; @@ -46701,7 +46685,7 @@ in dependencies = [ sources."@cliqz-oss/firefox-client-0.3.1" sources."@cliqz-oss/node-firefox-connect-1.2.1" - sources."@types/node-10.5.0" + sources."@types/node-10.5.1" sources."JSONSelect-0.2.1" sources."abbrev-1.1.1" sources."acorn-5.7.1" @@ -46796,7 +46780,7 @@ in ]; }) sources."base64-js-0.0.2" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."binary-extensions-1.11.0" sources."bl-1.2.2" sources."bluebird-2.9.34" @@ -46878,7 +46862,7 @@ in sources."colors-0.5.1" sources."columnify-1.5.4" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."common-tags-1.7.2" sources."component-emitter-1.2.1" sources."compress-commons-1.2.2" @@ -47603,7 +47587,7 @@ in }) sources."snapdragon-util-3.0.1" sources."sntp-2.1.0" - (sources."snyk-1.87.0" // { + (sources."snyk-1.88.0" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.1" @@ -47616,7 +47600,7 @@ in sources."debug-3.1.0" ]; }) - (sources."snyk-docker-plugin-1.10.2" // { + (sources."snyk-docker-plugin-1.10.3" // { dependencies = [ sources."debug-3.1.0" sources."request-2.87.0" @@ -47811,7 +47795,7 @@ in sources."user-home-2.0.0" sources."util-0.10.4" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-license-3.0.3" sources."verror-1.10.0" sources."vfile-1.4.0" @@ -47951,7 +47935,7 @@ in sources."define-property-1.0.0" ]; }) - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" (sources."bin-version-2.0.0" // { dependencies = [ sources."execa-0.1.1" @@ -48581,7 +48565,7 @@ in sources."use-3.1.0" sources."user-home-2.0.0" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-license-3.0.3" sources."verror-1.10.0" sources."vinyl-1.2.0" diff --git a/pkgs/development/node-packages/node-packages-v8.nix b/pkgs/development/node-packages/node-packages-v8.nix index 9bea5ebfe962..bcd5d2fa86e7 100644 --- a/pkgs/development/node-packages/node-packages-v8.nix +++ b/pkgs/development/node-packages/node-packages-v8.nix @@ -49,13 +49,13 @@ let sha1 = "cbc4b9a68981bf0b501ccd06a9058acd65309bf7"; }; }; - "@types/node-10.5.0" = { + "@types/node-10.5.1" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "10.5.0"; + version = "10.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-10.5.0.tgz"; - sha512 = "baXPuqA7EVcBUpA5so2K26DTzk7NCWBc9xrPMu9PbUMwgusJRm9zJBPhiDmJVEcnTQ3aOxUZeuFHpd9qMYDNRg=="; + url = "https://registry.npmjs.org/@types/node/-/node-10.5.1.tgz"; + sha512 = "AFLl1IALIuyt6oK4AYZsgWVJ/5rnyzQWud7IebaZWWV3YmgtPZkQmYio9R5Ze/2pdd7XfqF5bP+hWS11mAKoOQ=="; }; }; "@types/superagent-3.5.6" = { @@ -571,13 +571,13 @@ let sha1 = "1101e9544f4a76b1bc3b26d452ca96d7a35e7978"; }; }; - "bcrypt-pbkdf-1.0.1" = { + "bcrypt-pbkdf-1.0.2" = { name = "bcrypt-pbkdf"; packageName = "bcrypt-pbkdf"; - version = "1.0.1"; + version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.1.tgz"; - sha1 = "63bc5dcb61331b92bc05fd528953c33462a06f8d"; + url = "https://registry.npmjs.org/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.2.tgz"; + sha1 = "a4301d389b6a43f9b67ff3ca11a3f6637e360e9e"; }; }; "bencode-1.0.0" = { @@ -1291,6 +1291,15 @@ let sha512 = "VlfT9F3V0v+jr4yxPc5gg9s62/fIVWsd2Bk2iD435um1NlGMYdVCq+MjcXnhYq2icNOizHr1kK+5TI6H0Hy0ag=="; }; }; + "commander-2.16.0" = { + name = "commander"; + packageName = "commander"; + version = "2.16.0"; + src = fetchurl { + url = "https://registry.npmjs.org/commander/-/commander-2.16.0.tgz"; + sha512 = "sVXqklSaotK9at437sFlFpyOcJonxe0yST/AG9DkQKUdIE6IqGIMv4SfAQSKaJbSdVEJYItASCrBiVQHq1HQew=="; + }; + }; "commander-2.3.0" = { name = "commander"; packageName = "commander"; @@ -7420,13 +7429,13 @@ let sha512 = "FSs76hQZsSsdI4YeePxb5SQoWmHxDRznImGiAN905O1svyHvcoQ3hYptu3Y9hPxRHeB3lHzJR5KRZy0Byj7qqg=="; }; }; - "uuid-3.3.0" = { + "uuid-3.3.2" = { name = "uuid"; packageName = "uuid"; - version = "3.3.0"; + version = "3.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/uuid/-/uuid-3.3.0.tgz"; - sha512 = "ijO9N2xY/YaOqQ5yz5c4sy2ZjWmA6AR6zASb/gdpeKZ8+948CxwfMW9RrKVk5may6ev8c0/Xguu32e2Llelpqw=="; + url = "https://registry.npmjs.org/uuid/-/uuid-3.3.2.tgz"; + sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA=="; }; }; "valid-url-1.0.9" = { @@ -7768,7 +7777,7 @@ in sources."@cycle/isolate-3.3.0" sources."@cycle/run-3.4.0" sources."@cycle/time-0.10.1" - sources."@types/node-10.5.0" + sources."@types/node-10.5.1" sources."@types/superagent-3.5.6" sources."ansi-escapes-3.1.0" sources."ansi-regex-2.1.1" @@ -7933,7 +7942,7 @@ in sources."aws-sign2-0.7.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bencode-1.0.0" (sources."bitfield-rle-2.1.0" // { dependencies = [ @@ -8284,7 +8293,7 @@ in sources."util-deprecate-1.0.2" sources."utile-0.3.0" sources."utp-native-1.7.1" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."varint-3.0.1" sources."verror-1.10.0" (sources."winston-2.1.1" // { @@ -8426,7 +8435,7 @@ in sources."aws-sign2-0.6.0" sources."aws4-1.7.0" sources."balanced-match-1.0.0" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."block-stream-0.0.9" sources."boom-2.10.1" sources."brace-expansion-1.1.11" @@ -8525,7 +8534,7 @@ in sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" (sources."verror-1.10.0" // { dependencies = [ sources."assert-plus-1.0.0" @@ -8651,10 +8660,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "2.7.0"; + version = "2.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-2.7.0.tgz"; - sha1 = "cfaf3889c04125abfa20117358d7bcec72902faf"; + url = "https://registry.npmjs.org/pnpm/-/pnpm-2.9.0.tgz"; + sha1 = "1c2f5ade46b87cc3b1f3b7c66eeb7b0f4df4d968"; }; buildInputs = globalBuildInputs; meta = { @@ -8757,7 +8766,7 @@ in sources."aws4-1.7.0" sources."balanced-match-1.0.0" sources."base64-js-0.0.8" - sources."bcrypt-pbkdf-1.0.1" + sources."bcrypt-pbkdf-1.0.2" sources."bl-1.2.2" sources."bluebird-3.5.1" sources."brace-expansion-1.1.11" @@ -8791,7 +8800,7 @@ in sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."concat-map-0.0.1" sources."config-chain-1.1.11" sources."consolidate-0.14.5" @@ -9002,7 +9011,7 @@ in sources."url-to-options-1.0.1" sources."user-home-2.0.0" sources."util-deprecate-1.0.2" - sources."uuid-3.3.0" + sources."uuid-3.3.2" sources."validate-npm-package-name-3.0.0" sources."verror-1.10.0" sources."ware-1.3.0" @@ -9137,7 +9146,7 @@ in sources."color-convert-1.9.2" sources."color-name-1.1.1" sources."combined-stream-1.0.6" - sources."commander-2.15.1" + sources."commander-2.16.0" sources."component-emitter-1.2.1" sources."concat-map-0.0.1" sources."concat-stream-1.6.2" diff --git a/pkgs/development/ocaml-modules/cpdf/default.nix b/pkgs/development/ocaml-modules/cpdf/default.nix index dc6cf491eb44..bcbb96c2c0cb 100644 --- a/pkgs/development/ocaml-modules/cpdf/default.nix +++ b/pkgs/development/ocaml-modules/cpdf/default.nix @@ -24,10 +24,11 @@ stdenv.mkDerivation { cp cpdfmanual.pdf $out/share/doc/cpdf/ ''; - meta = { + meta = with stdenv.lib; { homepage = https://www.coherentpdf.com/; platforms = ocaml.meta.platforms or []; description = "PDF Command Line Tools"; - maintainers = with stdenv.lib.maintainers; [ vbgl ]; + license = licenses.unfree; + maintainers = [ maintainers.vbgl ]; }; } diff --git a/pkgs/development/ocaml-modules/ipaddr/default.nix b/pkgs/development/ocaml-modules/ipaddr/default.nix index 14cbae6c6f8b..20d558e37c1a 100644 --- a/pkgs/development/ocaml-modules/ipaddr/default.nix +++ b/pkgs/development/ocaml-modules/ipaddr/default.nix @@ -1,5 +1,6 @@ { stdenv, buildOcaml, fetchurl, ocamlbuild, findlib -, jbuilder, sexplib, ppx_sexp_conv, ppx_deriving }: +, jbuilder, sexplib, ppx_sexp_conv +}: buildOcaml rec { name = "ipaddr"; @@ -10,8 +11,8 @@ buildOcaml rec { sha256 = "1amb1pbm9ybpxy6190qygpj6nmbzzs2r6vx4xh5r6v89szx9rfxw"; }; - buildInputs = [ findlib ocamlbuild jbuilder ppx_sexp_conv ]; - propagatedBuildInputs = [ ppx_deriving sexplib ]; + buildInputs = [ findlib ocamlbuild jbuilder ]; + propagatedBuildInputs = [ ppx_sexp_conv sexplib ]; inherit (jbuilder) installPhase; diff --git a/pkgs/development/ocaml-modules/janestreet/default.nix b/pkgs/development/ocaml-modules/janestreet/default.nix index 9e3c6622e87a..a4c3c15160d1 100644 --- a/pkgs/development/ocaml-modules/janestreet/default.nix +++ b/pkgs/development/ocaml-modules/janestreet/default.nix @@ -1,605 +1,618 @@ { stdenv, lib, janePackage, ocaml, ocamlbuild, angstrom, cryptokit, ctypes, magic-mime, ocaml-migrate-parsetree, octavius, ounit, ppx_deriving, re, - zarith, num, openssl }: + zarith, num, openssl +, ppxlib +}: rec { - # Jane Street packages, up to ppx_core - - sexplib = janePackage { - name = "sexplib"; - meta.description = "Automated S-expression conversion"; - hash = "1agw649n0rnf6h4y2dr1zs1970nncxgjmf90848vbxv8y9im4yy2"; - propagatedBuildInputs = [ num ]; - }; - - base = janePackage { - name = "base"; - hash = "13brvkkj76syh8ws1k3lnvk88jvc6jxx16nsq5ysh558db91v5x7"; - propagatedBuildInputs = [ sexplib ]; - meta.description = "Full standard library replacement for OCaml"; - }; - ocaml-compiler-libs = janePackage { name = "ocaml-compiler-libs"; - hash = "0dg9jgwwir99y28bki17cqf3v30apd7cf0qdi8hfwb5pkgp9zdng"; + hash = "03jds7bszh8wwpfwxb3dg0gyr1j1872wxwx1xqhry5ir0i84bg0s"; meta.description = "OCaml compiler libraries repackaged"; }; - ppx_ast = janePackage { - name = "ppx_ast"; - hash = "02jsi9b200071i4x0w358by09xabw9v13q7xrx6cdshqxw0q97kf"; - propagatedBuildInputs = [ ocaml-compiler-libs ocaml-migrate-parsetree ]; - meta.description = "OCaml AST used by Jane Street ppx rewriters"; - }; - - ppx_traverse_builtins = janePackage { - name = "ppx_traverse_builtins"; - hash = "0hhw565cwjlr1cwpgkfj0v2kc0lqxyjcrmi9q3hx3344biql8q17"; - meta.description = "Builtins for Ppx_traverse"; + sexplib0 = janePackage { + name = "sexplib0"; + meta.description = "Library containing the definition of S-expressions and some base converters"; + hash = "07v3ggyss7xhfv14bjk1n87sr42iqwj4cgjiv2lcdfkqk49i2bmi"; }; - stdio = janePackage { - name = "stdio"; - hash = "0ydhy4f89f00n0pfgk8fanj6chzx433qnlcrxnddzg4d3dhb4254"; - propagatedBuildInputs = [ base sexplib ]; - meta.description = "Standard IO library for OCaml"; - }; - - ppx_core = janePackage { - name = "ppx_core"; - hash = "0fm26bgf10gk8xl6j4xvwa5s7nmns8rlx7iblb7haj4dxc0qsjhd"; - propagatedBuildInputs = [ ppx_ast ppx_traverse_builtins stdio ]; - meta.description = "Jane Street's standard library for ppx rewriters"; - }; - - # Jane Street packages, up to ppx_base - - ppx_optcomp = janePackage { - name = "ppx_optcomp"; - hash = "134anhlh32s5yjjbiqsrmjw51i08pyghzccmrwg1bipl64q55m6n"; - propagatedBuildInputs = [ ppx_core ]; - meta.description = "Optional compilation for OCaml"; + parsexp = janePackage { + name = "parsexp"; + hash = "1nyq23s5igd8cf3n4qxprjvhbmb6ighb3fy5mw7hxl0mdgsw5fvz"; + propagatedBuildInputs = [ sexplib0 ]; + meta.description = "S-expression parsing library"; }; - ppx_driver = janePackage { - name = "ppx_driver"; - hash = "0kzijcsq32wf33f4spgja3w5jb9s8wnzmr6lpm8lahw05g80q8nj"; - buildInputs = [ ocamlbuild ]; - propagatedBuildInputs = [ ppx_optcomp ]; - meta.description = "Feature-full driver for OCaml AST transformers"; + sexplib = janePackage { + name = "sexplib"; + meta.description = "Library for serializing OCaml values to and from S-expressions"; + hash = "1qfl0m04rpcjvc4yw1hzh6r16jpwmap0sa9ax6zjji67dz4szpyb"; + propagatedBuildInputs = [ num parsexp ]; }; - ppx_metaquot = janePackage { - name = "ppx_metaquot"; - hash = "1wb8pl5v57yy1g0g61mvgnxgn2ix2r5skiz33g8hdjvx91pbgmv4"; - propagatedBuildInputs = [ ppx_driver ]; - meta.description = "Metaquotations for ppx_ast"; + base = janePackage { + name = "base"; + hash = "0ad5xcyds2lwy9dk7gqwygxk5y769ckrgrjcykdalwdh8qfbi6nf"; + propagatedBuildInputs = [ sexplib0 ]; + meta.description = "Full standard library replacement for OCaml"; }; - ppx_type_conv = janePackage { - name = "ppx_type_conv"; - hash = "0xvn00fzj8lb41slkl91p9z62byg0rlnygdxf4xvrqglg04wa9cz"; - propagatedBuildInputs = [ ppx_metaquot ppx_deriving ]; - meta.description = "Support Library for type-driven code generators"; + stdio = janePackage { + name = "stdio"; + hash = "1facajqhvq34g2wrg368y0ajxd6lrj5b3lyzyj0jhdmraxajjcwn"; + propagatedBuildInputs = [ base ]; + meta.description = "Standard IO library for OCaml"; }; - ppx_sexp_conv = janePackage { - name = "ppx_sexp_conv"; - hash = "0kvbm34wbxrcpvrrbh5wq4kzx4yb67iidzcq5x1d4bygvp8x2lzd"; - propagatedBuildInputs = [ ppx_type_conv sexplib ]; - meta.description = "Generation of S-expression conversion functions from type definitions"; + configurator = janePackage { + name = "configurator"; + hash = "0h686630cscav7pil8c3w0gbh6rj4b41dvbnwmicmlkc746q5bfk"; + propagatedBuildInputs = [ stdio ]; + meta.description = "Helper library for gathering system configuration"; }; ppx_compare = janePackage { name = "ppx_compare"; - hash = "1fjrb7bz7wrykf4pm7s4s32030jdw65hi7kzd22ibd1afnkz3xw1"; - propagatedBuildInputs = [ ppx_type_conv ]; + version = "0.11.1"; + hash = "06bq4m1bsm4jlx4g7wh5m99qky7xm4c2g52kaz6pv25hdn5agi2m"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ base ppx_deriving ]; meta.description = "Generation of comparison functions from types"; }; - ppx_enumerate = janePackage { - name = "ppx_enumerate"; - hash = "1b4q1h19bh2xdxgqwdmn5kv95lyvpyf6mfh2fswagf2ajyfshksx"; - propagatedBuildInputs = [ ppx_type_conv ]; - meta.description = "Generate a list containing all values of a finite type"; - }; - - ppx_hash = janePackage { - name = "ppx_hash"; - hash = "12yln0gpf21ifr205qxk7dn83bsj07zhmak2xsjap7xkq4k8g9gc"; - propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ]; - meta.description = "A ppx rewriter that generates hash functions from type expressions and definitions"; - }; - - ppx_js_style = janePackage { - name = "ppx_js_style"; - hash = "11i2cwavbbplhsl5n4zmgpr8gjc4ixa5016vc72y8h78g71jj18n"; - propagatedBuildInputs = [ ppx_metaquot octavius ]; - meta.description = "Code style checker for Jane Street Packages"; - }; - - ppx_base = janePackage { - name = "ppx_base"; - hash = "1rk7dlnhl30prda9q34ic0xv375i52j47bkr664ry3ghklxx6d8y"; - propagatedBuildInputs = [ ppx_enumerate ppx_hash ppx_js_style ]; - meta.description = "Base set of ppx rewriters"; - }; - - # Jane Street packages, up to ppx_bin_prot - - fieldslib = janePackage { - name = "fieldslib"; - hash = "19l05d7hhc74zg48hj0m7sips8z3vpara1f0lvd8h7n46wpbs608"; - propagatedBuildInputs = [ ppx_driver ]; - meta.description = "OCaml record fields as first class values"; + ppx_sexp_conv = janePackage { + name = "ppx_sexp_conv"; + version = "0.11.2"; + hash = "0pqwnqy1xp309wvdcaax4lg02yk64lq2w03mbgfvf6ps5ry4gis9"; + propagatedBuildInputs = [ sexplib0 ppxlib ppx_deriving ]; + meta.description = "Generation of S-expression conversion functions from type definitions"; }; variantslib = janePackage { name = "variantslib"; - hash = "0j1qlz7g8ny1qf3a7d38v2a7sxiis1nwcxkvz0myfsc3dkn716an"; - propagatedBuildInputs = [ ppx_driver ]; + hash = "0hbsk34ghc28h8pzbma923ma2bgnz8lzrgcqqx9bzg161jl4s4r3"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ base ]; meta.description = "OCaml variants as first class values"; }; - ppx_traverse = janePackage { - name = "ppx_traverse"; - hash = "1ps7s4vwvzik9wvmwd0i3a1sjgm0xx32yivc2r8ix9qqwylvjllq"; - propagatedBuildInputs = [ ppx_type_conv ]; - meta.description = "Automatic generation of open recursion classes"; + ppx_variants_conv = janePackage { + name = "ppx_variants_conv"; + version = "0.11.1"; + hash = "1yc0gsds5m2nv39zga8nnrca2n75rkqy5dz4xj1635ybz20hhbjd"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ ppx_deriving variantslib ]; + meta.description = "Generation of accessor and iteration functions for OCaml variant types"; }; - ppx_custom_printf = janePackage { - name = "ppx_custom_printf"; - hash = "113dvmiy07lb6mf0f88avf4cfkix4q029xqi2w0h26xngp88s31p"; - propagatedBuildInputs = [ ppx_sexp_conv ppx_traverse ]; - meta.description = "Printf-style format-strings for user-defined string conversion"; + fieldslib = janePackage { + name = "fieldslib"; + hash = "1yvjvfax56lmn2lxbykcmhgmxypws1vp9lhnyb8bhbavsv8yc6da"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "OCaml record fields as first class values"; }; ppx_fields_conv = janePackage { name = "ppx_fields_conv"; - hash = "1df095qczkzclmdcs1nrm89wswnxivn9kvn6sw65jpvryfkf5v5k"; - propagatedBuildInputs = [ fieldslib ppx_type_conv ]; + hash = "1bb9cmn4js7p3qh8skzyik1pcz6sj1k4xkhf12fg1bjmb5fd0jx1"; + propagatedBuildInputs = [ fieldslib ]; meta.description = "Generation of accessor and iteration functions for OCaml records"; }; - ppx_variants_conv = janePackage { - name = "ppx_variants_conv"; - hash = "1l19rkclf65f8snw2v0yibkvk28by241dkp6jb0076dyghbln451"; - propagatedBuildInputs = [ ppx_type_conv variantslib ]; - meta.description = "Generation of accessor and iteration functions for OCaml variant types"; + ppx_custom_printf = janePackage { + name = "ppx_custom_printf"; + hash = "1dvjzvaxhx53jqwrrlxdckwl1azrhs9kvwb48mhgd0jnz65ny726"; + propagatedBuildInputs = [ ppx_sexp_conv ]; + meta.description = "Printf-style format-strings for user-defined string conversion"; }; bin_prot = janePackage { name = "bin_prot"; - hash = "1yyjpwr2s5l8sm9j77a4cmr92rdx73iy3fwqyxf7dr8hfrmd938v"; + hash = "1mgbyzsr8h0y4s4j9dv7hsdrxyzhhjww5khwg2spi2my7ia95m0l"; propagatedBuildInputs = [ ppx_compare ppx_custom_printf ppx_fields_conv ppx_variants_conv ]; meta.description = "Binary protocol generator"; }; + jane-street-headers = janePackage { + name = "jane-street-headers"; + hash = "0kij4c7qxrja787f3sm3z6mzr322486h2djrlyhnl66vp8hrv8si"; + meta.description = "Jane Street header files"; + }; + ppx_here = janePackage { name = "ppx_here"; - hash = "0ysx25ai7mpzxfpbswd9k38hpxhjm12bj0iw5ghvhdjnnn07kwcv"; - propagatedBuildInputs = [ ppx_driver ]; + hash = "04njv8s4n54x9rg0012ymd6y6lrnqprnh0f0f6s0jcp79q7mv43i"; + buildInputs = [ ppxlib ]; meta.description = "Expands [%here] into its location"; }; - ppx_bin_prot = janePackage { - name = "ppx_bin_prot"; - hash = "06n7gs51847p75baay9ar8n15ynqzhdbnwd8xvp8vxs6krr6wpfd"; - propagatedBuildInputs = [ ppx_here bin_prot ]; - meta.description = "Generation of bin_prot readers and writers from types"; - }; - - # Jane Street packages, up to ppx_jane - ppx_assert = janePackage { name = "ppx_assert"; - hash = "09xrcs2sk1a9vjn16bd1cpz3b52kbck7fhc7zrz24lv121wspiaj"; - propagatedBuildInputs = [ ppx_sexp_conv ppx_here ppx_compare ]; + hash = "0qbdrl0rj0midnb6sdyaz00s0d4nb8zrrdf565lcdsi1rbnyrzan"; + buildInputs = [ ppx_here ]; + propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ]; meta.description = "Assert-like extension nodes that raise useful errors on failure"; }; + ppx_hash = janePackage { + version = "0.11.1"; + name = "ppx_hash"; + hash = "1p0ic6aijxlrdggpmycj12q3cy9xksbq2vq727215maz4snvlf5p"; + propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ]; + meta.description = "A ppx rewriter that generates hash functions from type expressions and definitions"; + }; + ppx_inline_test = janePackage { name = "ppx_inline_test"; - hash = "0ar4lpl3zwb7k1f4clqsw1hyzwa104gf118a2i89c4hvj2721jwf"; - propagatedBuildInputs = [ ppx_metaquot ]; + hash = "11n94fz1asjf5vqdgriv0pvsa5lbfpqcyk525c7816w23vskcvq6"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ base ]; meta.description = "Syntax extension for writing in-line tests in OCaml code"; }; + ppx_sexp_message = janePackage { + name = "ppx_sexp_message"; + hash = "0d94pf0mrmyp905ncgj4w6cc6zpm4nlib6nclslhgs89pxpzg6a0"; + buildInputs = [ ppx_here ]; + propagatedBuildInputs = [ ppx_sexp_conv ]; + meta.description = "A ppx rewriter for easy construction of s-expressions"; + }; + typerep = janePackage { name = "typerep"; - hash = "11na0kag6aggckx7326zq8hh9pzymkwqfxsd25fswskk5lpnvwqv"; + hash = "00j4by75fl9niqvlpiyw6ymlmlmgfzysm8w25cj5wsfsh4yrgr74"; propagatedBuildInputs = [ base ]; meta.description = "Runtime types for OCaml"; }; + ppx_typerep_conv = janePackage { + version = "0.11.1"; + name = "ppx_typerep_conv"; + hash = "0a13dpfrrg0rsm8qni1bh7pqcda30l70z8r6yzi5a64bmwk7g5ah"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ ppx_deriving typerep ]; + meta.description = "Generation of runtime types from type declarations"; + }; + + ppx_js_style = janePackage { + name = "ppx_js_style"; + hash = "1cwqyrkykc8wi60grbid1w072fcvf7k0hd387jz7mxfw44qyb85g"; + propagatedBuildInputs = [ ppxlib octavius ]; + meta.description = "Code style checker for Jane Street Packages"; + }; + + ppx_enumerate = janePackage { + version = "0.11.1"; + name = "ppx_enumerate"; + hash = "0spx9k1v7vjjb6sigbfs69yndgq76v114jhxvzjmffw7q989cyhr"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ ppx_deriving ]; + meta.description = "Generate a list containing all values of a finite type"; + }; + + ppx_base = janePackage { + name = "ppx_base"; + hash = "079caqjbxk1d33hy69017n3dwslqy52alvzjddwpdjb04vjadlk6"; + propagatedBuildInputs = [ ppx_compare ppx_enumerate ppx_hash ppx_js_style ]; + meta.description = "Base set of ppx rewriters"; + }; + ppx_bench = janePackage { name = "ppx_bench"; - hash = "17l5shhi613l02yfipyr4hna3lj94kn6zy746rvsgcibyc7nybq6"; - propagatedBuildInputs = [ ppx_inline_test ]; + hash = "0z98r6y4lpj6dy265m771ylx126hq3v1zjsk74yqvpwwd63gx3jz"; + buildInputs = [ ppxlib ppx_inline_test ]; meta.description = "Syntax extension for writing in-line benchmarks in OCaml code"; }; + ppx_bin_prot = janePackage { + version = "0.11.1"; + name = "ppx_bin_prot"; + hash = "1h60i75bzvhna1axyn662gyrzhh441l79vl142d235i5x31dmnkz"; + buildInputs = [ ppxlib ppx_here ]; + propagatedBuildInputs = [ bin_prot ]; + meta.description = "Generation of bin_prot readers and writers from types"; + }; + ppx_expect = janePackage { name = "ppx_expect"; - hash = "0qq07iqfsbksklwn7rr1wdz79kji0iyq5qkyfwxrxm0ci9fz0h1w"; - propagatedBuildInputs = [ ppx_inline_test ppx_fields_conv ppx_custom_printf ppx_assert ppx_variants_conv re ]; + hash = "1g0r67vfw9jr75pybiw4ysfiswlzyfpbj0gl91rx62gqdhjh1pga"; + buildInputs = [ ppx_assert ppx_custom_printf ppx_fields_conv ppx_here ppx_variants_conv re ]; + propagatedBuildInputs = [ fieldslib ppx_compare ppx_inline_test ppx_sexp_conv ]; meta.description = "Cram like framework for OCaml"; }; ppx_fail = janePackage { name = "ppx_fail"; - hash = "0cwz16xy5s0ijm9y98lh9089ic7wd161njpdncgsxy6lgsjawap2"; - propagatedBuildInputs = [ ppx_here ppx_metaquot ]; + hash = "0d0xadcl7mhp81kspcd2b0nh75h34w5a6s6j9qskjjbjif87wiix"; + buildInputs = [ ppxlib ppx_here ]; meta.description = "Add location to calls to failwiths"; }; ppx_let = janePackage { name = "ppx_let"; - hash = "0smdxkjh4nxrf3mwzfvkjbymvwbz04v70k2gwxsaz5f6wvnhyvmm"; - propagatedBuildInputs = [ ppx_driver ]; + hash = "1ckzwljlb78cdf6xxd24nddnmsihvjrnq75r1b255aj3xgkzsygx"; + buildInputs = [ ppxlib ]; meta.description = "Monadic let-bindings"; }; + ppx_optcomp = janePackage { + name = "ppx_optcomp"; + hash = "1rahkjq6vpffs7wdz1crgbxkdnlfkj1i3j12c2andy4fhj49glcm"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ ppx_deriving ]; + meta.description = "Optional compilation for OCaml"; + }; + ppx_optional = janePackage { name = "ppx_optional"; - hash = "1qmc0yzp9jab8yndxs0ca3qx35wyhfwiknqk0gfjmar2ji87zlzn"; - propagatedBuildInputs = [ ppx_metaquot ]; + hash = "0aw3hvrsdjpw4ik7rf15ghak31vhdr1lgpphr18mj76rnlrhirmx"; + propagatedBuildInputs = [ ppxlib ]; meta.description = "Pattern matching on flat options"; }; ppx_pipebang = janePackage { name = "ppx_pipebang"; - hash = "0lzw6qc9f9g7zkbhhp4603b3mj3jvca4phx40f95d49y370325qx"; - propagatedBuildInputs = [ ppx_metaquot ]; + hash = "0smgq587amlr3hivbbg153p83dj37w30cssp9cffc0v8kg84lfhr"; + buildInputs = [ ppxlib ]; meta.description = "A ppx rewriter that inlines reverse application operators |> and |!"; }; - ppx_sexp_message = janePackage { - name = "ppx_sexp_message"; - hash = "1gddia4ry2pmnh4qj5855a044lqs23g5h038bkny73xg7w06jhrk"; - propagatedBuildInputs = [ ppx_sexp_conv ppx_here ]; - meta.description = "A ppx rewriter for easy construction of s-expressions"; - }; - ppx_sexp_value = janePackage { name = "ppx_sexp_value"; - hash = "1xd5ln997wka8x4dba58yh525a5f36sklngg2z7iyiss7xi4yg7i"; - propagatedBuildInputs = [ ppx_sexp_conv ppx_here ]; + hash = "107zwb580nrmc0l03dl3y3hf12s3c1vv8b8mz6sa4k5afp3s9nkl"; + buildInputs = [ ppx_here ]; + propagatedBuildInputs = [ ppx_sexp_conv ]; meta.description = "A ppx rewriter that simplifies building s-expressions from OCaml values"; }; - ppx_typerep_conv = janePackage { - name = "ppx_typerep_conv"; - hash = "1bk8zgagf6q5lb7icsrbzs05c8dz1gij0clzk39am40l83zs3ain"; - propagatedBuildInputs = [ ppx_type_conv typerep ]; - meta.description = "Generation of runtime types from type declarations"; - }; - ppx_jane = janePackage { name = "ppx_jane"; - hash = "1lhzcfh129dc54bkg16rnldi97682nlzdr8a47ham3hg2kkab8kr"; - propagatedBuildInputs = [ ppx_base ppx_bench ppx_bin_prot ppx_expect ppx_fail ppx_let ppx_optional ppx_pipebang ppx_sexp_message ppx_sexp_value ppx_typerep_conv ]; + hash = "0l1p6llaa60mrc5p9400cqv9yy6h76x5wfq3z1cx5xawy0yz4vlb"; + buildInputs = [ ppxlib ]; + propagatedBuildInputs = [ ppx_assert ppx_base ppx_bench ppx_bin_prot ppx_expect ppx_fail ppx_here ppx_let ppx_optcomp ppx_optional ppx_pipebang ppx_sexp_message ppx_sexp_value ppx_typerep_conv ]; meta.description = "Standard Jane Street ppx rewriters"; }; - # Jane Street packages, up to core - - configurator = janePackage { - name = "configurator"; - hash = "0lydjj4r21ipmc91hyf91mjjvcibk4r7ipan8bqfzb5l490r95rp"; - propagatedBuildInputs = [ base stdio ]; - meta.description = "Helper library for gathering system configuration"; - }; - - jane-street-headers = janePackage { - name = "jane-street-headers"; - hash = "1sqyqzhgi52vq33i8ha2pmjg026qiqmpaqmibs3pfj4jsscwl842"; - meta.description = "Jane Street header files"; + splittable_random = janePackage { + name = "splittable_random"; + hash = "1yrvpm6g62f8k6ihccxhfxpvmxbqxhi7p790a8jkdmyfdd1l6z73"; + propagatedBuildInputs = [ ppx_jane ]; + meta.description = "PRNG that can be split into independent streams"; }; core_kernel = janePackage { name = "core_kernel"; - hash = "00iqd9wcana2blgdih1lq9zqd31agr6az912bhsklyarvvcn9hcb"; - propagatedBuildInputs = [ configurator jane-street-headers ppx_jane ]; + hash = "0xaw8189i9z72fvzbxfv1qrf4wvj8v45bl7g3z7ynsqkvh6smr7d"; + propagatedBuildInputs = [ configurator jane-street-headers sexplib splittable_random ]; meta.description = "Jane Street's standard library overlay (kernel)"; }; spawn = janePackage { + version = "0.12.0"; name = "spawn"; - hash = "1av1pjkiqq3nz0rjmykiylhf0iv6d1ssvqqj6wcc3c0bzvgyih0p"; + hash = "0amgj7g9sjlbjivn1mg7yjdmxd21hgp4a0ak2zrm95dmm4gi846i"; meta.description = "Spawning sub-processes"; }; core = janePackage { + version = "0.11.1"; name = "core"; - hash = "06cra34rlqpmxh4f3v1vps9fs7hy90jjnipdvcf9z8cn925mdj46"; + hash = "0wa2dsfk5m5wlhz915664y9h08idijj5s41hyg8n54dhihvxw2ci"; propagatedBuildInputs = [ core_kernel spawn ]; meta.description = "Jane Street's standard library overlay"; }; - # Jane Street packages, up to core_extended - - re2 = janePackage { - name = "re2"; - version = "0.10.1"; - hash = "1d39brryfaj5fqp1kzw67n1bvfxv28xi058mk5il14wj40y5ldh1"; + textutils_kernel = janePackage { + name = "textutils_kernel"; + hash = "0s1ps7h54vgl76pll3y5qa1bw8f4h8wxc8mg8jq6bz8vxvl0dfv4"; propagatedBuildInputs = [ core_kernel ]; - meta = { - description = "OCaml bindings for RE2"; - broken = stdenv.isDarwin; - }; + meta.description = "The subset of textutils using only core_kernel and working in javascript"; }; textutils = janePackage { name = "textutils"; - hash = "0mnmrp8kd443qx9gahrwr04a8q4hskcad2i1k9amiypbwy566s37"; + hash = "1jmhpaihnndf4pr8xsk7ws70n4mvv34ry0ggqqpfs3wb2vkcdg6j"; propagatedBuildInputs = [ core textutils_kernel ]; meta.description = "Text output utilities"; }; - textutils_kernel = janePackage { - name = "textutils_kernel"; - hash = "0w7nf7sycffff318fxr42ss1fxa3bsy9kj7y27dl1whrajip9mb7"; - propagatedBuildInputs = [ core_kernel ocaml-migrate-parsetree ]; - meta.description = "The subset of textutils using only core_kernel and working in javascript"; + re2 = janePackage { + name = "re2"; + hash = "0bl65d0nmvr7k1mkkcc4aai86l5qzgn1xxwmszshpwhaz87cqghd"; + propagatedBuildInputs = [ core_kernel ]; + meta = { + description = "OCaml bindings for RE2"; + broken = stdenv.isDarwin; + }; }; core_extended = janePackage { name = "core_extended"; - hash = "0g9adnr68l4ggayilmvz9nnf2slvnp0jzknjrxk10cab72l97rv4"; - propagatedBuildInputs = [ core re2 textutils ]; + hash = "1fvnr6zkpbl48dl7nn3j1dpsrr6bi00iqh282wg5lgdhcsjbc0dy"; + propagatedBuildInputs = [ core re re2 textutils ]; postPatch = '' patchShebangs src/discover.sh ''; - meta = { - description = "Jane Street Capital's standard library overlay"; - }; + meta.description = "Jane Street Capital's standard library overlay"; }; - # Jane Street async packages - async_kernel = janePackage { name = "async_kernel"; - hash = "09dzfyfmjf9894yimf1fpnc2l1v342f51a2wjr3d23pw6xnbcrl0"; + hash = "1drxawih7vhhb1mhd291698ly7yb38qzif82jk1adqcvwdb547af"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Jane Street Capital's asynchronous execution library (core)"; }; + protocol_version_header = janePackage { + name = "protocol_version_header"; + hash = "159qmkb0dsfmr1lv2ly50aqszpm24bvrm3sw07n2zhkxgy6q613z"; + propagatedBuildInputs = [ core_kernel ocaml-migrate-parsetree ]; + meta.description = "Protocol aware version negotiation"; + }; + async_rpc_kernel = janePackage { name = "async_rpc_kernel"; - hash = "1ardfr4vwbzc41qa2ccmzp15m9w3nbdl9cy4crvm87fi0ngkhixy"; + hash = "0wl7kp30qxkalk91q5pja9agsvvmdjvb2q7s3m79dlvwwi11l33y"; propagatedBuildInputs = [ core_kernel async_kernel protocol_version_header ]; meta.description = "Platform-independent core of Async RPC library"; }; async_unix = janePackage { name = "async_unix"; - hash = "151pn0543fwvi5gkdkbd05v8y9gjbxi1n69r4jxzc0bh842xx4xz"; + hash = "1y5za5fdh0x82zdjigxci9zm9jnpfd2lfgpjcq4rih3s28f16sf7"; propagatedBuildInputs = [ core async_kernel ]; meta.description = "Jane Street Capital's asynchronous execution library (unix)"; }; async_extra = janePackage { name = "async_extra"; - hash = "0vf3nfj8h7vnigs8l8m1bsg6w3szgaylaps6mbl4dsaihxdc732n"; + hash = "1qac95zlvq34fh2wbwbw0vdzxnba6si8lkal7n09y2lzpwvsifx3"; propagatedBuildInputs = [ async_rpc_kernel async_unix ]; meta.description = "Jane Street's asynchronous execution library (extra)"; }; async = janePackage { name = "async"; - hash = "05ldvyw75648qrjx7q794m9llmlnqklh97lc09fv8biw515dby3d"; + hash = "1i05hzk4mhzj1mw98b2bdbxhnq03jvhkkkw4d948i6265jzrrbv5"; propagatedBuildInputs = [ async_extra ]; meta.description = "Jane Street Capital's asynchronous execution library"; }; async_find = janePackage { name = "async_find"; - hash = "05cpnz1m09h276cq6v3bh7da4iai14gmlh4cnh64v41f8hssw63s"; + hash = "0s0qafx74ri1vr2vv3iy1j7s3p6gp7vyg0mw5g17iafk0w6lv2iq"; propagatedBuildInputs = [ async ]; meta.description = "Directory traversal with Async"; }; async_interactive = janePackage { name = "async_interactive"; - hash = "1h2419l6nlqph3ipp5zdwyq55d3s602i4bv4jhsridmzy6cxxdxs"; + hash = "01rlfcylpiak6a2n6q3chp73cvkhvb65n906dj0flmxmagn7dxd1"; propagatedBuildInputs = [ async ]; meta.description = "Utilities for building simple command-line based user interfaces"; }; async_parallel = janePackage { name = "async_parallel"; - hash = "0r8q73v26w3grj9n9wyrf65cq9w6pfzrmg9iswsy4jjb5r02bpr5"; + hash = "0hak8ba3rfzqhz5hz2annqmsv5bkqzdihhafp0f58ryrlskafwag"; propagatedBuildInputs = [ async ]; meta.description = "Distributed computing library"; }; async_shell = janePackage { name = "async_shell"; - hash = "1snkr944l3a627k23yh8f0lr900dpg2aym2l59fpp75s29pyk5md"; + hash = "1jb01ygfnhabsy72xlcg11vp7rr37sg555sm0k3yxl4r5az3y2ay"; propagatedBuildInputs = [ core_extended async ]; - meta = { - description = "Shell helpers for Async"; - }; + meta.description = "Shell helpers for Async"; }; async_ssl = janePackage { name = "async_ssl"; - hash = "1cb9wpmgifa5vj9gadbav6bq6vxcm3g0jc6wxnkj3hgvnj35j2vy"; + hash = "1p83fzfla4rb820irdrz3f2hp8kq5zrhw47rqmfv6qydlca1bq64"; propagatedBuildInputs = [ async ctypes openssl ]; meta.description = "Async wrappers for SSL"; }; - # Jane Street packages, up to expect_test_helpers - sexp_pretty = janePackage { name = "sexp_pretty"; - hash = "106r91ahzdr8yvphs1s3ck8r89c4qhpcl9q6j5rbxrbihgb71i8d"; - propagatedBuildInputs = [ ppx_base re ]; + hash = "0xskahjggbwvvb82fn0jp1didxbgpmgks76xhwp9s3vqkhgz6918"; + propagatedBuildInputs = [ ppx_base re sexplib ]; meta.description = "S-expression pretty-printer"; }; expect_test_helpers_kernel = janePackage { name = "expect_test_helpers_kernel"; - hash = "027pwfkdnz8rzgg9dqa4x2ir0zn8lav7gh64cih35r455xbfnvpr"; + hash = "0m113vq4m1xm3wmwa08r6qjc7p5f0y3ss8s4i2z591ycgs2fxzlj"; propagatedBuildInputs = [ core_kernel sexp_pretty ]; meta.description = "Helpers for writing expectation tests"; }; expect_test_helpers = janePackage { name = "expect_test_helpers"; - hash = "0rzsgj8h73gx18sz1a1d3pbrjkb0vd6shl1h71n4xl05njcfb73r"; + hash = "13n6h7mimwkbsjdix96ghfrmxjd036m4h4zgl8qag00aacqclvpi"; propagatedBuildInputs = [ async expect_test_helpers_kernel ]; meta.description = "Async helpers for writing expectation tests"; }; - # Miscellaneous Jane Street packages - bignum = janePackage { name = "bignum"; - hash = "0vs52aqq7pwazgv35zdd66c5v5ha1wrgrcmzc17c2qbswy8wcc37"; + hash = "0hqd88fb90rsj1wjj4k79gigcf31c6a45msasw99zzifzppr3w3f"; propagatedBuildInputs = [ core_kernel zarith num ]; meta.description = "Core-flavoured wrapper around zarith's arbitrary-precision rationals"; }; cinaps = janePackage { name = "cinaps"; - hash = "1mwllcakvsirxpbwcqlglwqkiz8cks7vbjf1jvngs9703mx1xdcy"; + hash = "0f8cx4xkkk4wqpcbvva8kxdndbgawljp17dwppc6zpjpkjl8s84j"; propagatedBuildInputs = [ re ]; meta.description = "Trivial Metaprogramming tool using the OCaml toplevel"; }; command_rpc = janePackage { name = "command_rpc"; - hash = "0lq1vcz8qyyqabrz9isw2pw50663lwmq4w3187jp99ygar9lk5n2"; + hash = "111v4km0ds8ixmpmwg9ck36ap97400mqzhijf57kj6wfwgzcmr2g"; propagatedBuildInputs = [ async ]; meta.description = "Utilities for Versioned RPC communication with a child process over stdin and stdout"; }; + # Deprecated libraries + + ppx_ast = janePackage { + name = "ppx_ast"; + hash = "125bzswcwr3nb26ss8ydh8z4218c8fi3s2kvgqp1j1fhc5wwzqgj"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "Deprecated (see ppxlib)"; + }; + + ppx_core = janePackage { + name = "ppx_core"; + hash = "11hgm9mxig4cm3c827f6dns9mjv3pf8g6skf10x0gw9xnp1dmzmx"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "Deprecated (see ppxlib)"; + }; + + ppx_driver = janePackage { + name = "ppx_driver"; + hash = "00kfx6js2kxk57k4v7hiqvwk7h35whgjihnxf75m82rnaf4yzvfi"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "Deprecated (see ppxlib)"; + }; + + ppx_metaquot = janePackage { + name = "ppx_metaquot"; + hash = "1vz8bi56jsz8w0894vgbfsfvmdyh5k1dgv45l8vhkks0s7d3ldji"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "Deprecated (see ppxlib)"; + }; + + ppx_traverse = janePackage { + name = "ppx_traverse"; + hash = "1p2n5da4mxh9fk4gvxlibc706bs5xwkbppxd1x0ip1vln5pabbq5"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "Deprecated (see ppxlib)"; + }; + + ppx_traverse_builtins = janePackage { + name = "ppx_traverse_builtins"; + hash = "0qlf7i8h8k3a9h8nhb0ki3y1knr6wgbm24f1qaqni53fpvzv0pfb"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "Deprecated (see ppxlib)"; + }; + + ppx_type_conv = janePackage { + name = "ppx_type_conv"; + hash = "04dbrglqqhkas25cpjz8xhjcbpk141c35qggzw66bn69izczfmaf"; + propagatedBuildInputs = [ ppxlib ]; + meta.description = "Deprecated (see ppxlib)"; + }; + + # Miscellaneous Jane Street packages + core_bench = janePackage { name = "core_bench"; - hash = "1py68z848gj5wdmknqmzdb6zg65k5zchv6i6vzygi5nszn3zzwgc"; + hash = "10i28ssfdqxxhq0rvnlp581lr1cq2apkhmm8j83fksjkmbxcrasc"; propagatedBuildInputs = [ core_extended ]; - meta = { - description = "Micro-benchmarking library for OCaml"; - }; + meta.description = "Micro-benchmarking library for OCaml"; }; core_profiler = janePackage { name = "core_profiler"; - hash = "1vqkb8fzhs0k94k78whjnsznj85qa18kp0bq73mdkffz9562hdyr"; + hash = "1kaaw3jp3qarbd9rgpjfb9md0dqblf2bxiqb245sqmx4c1346v1c"; propagatedBuildInputs = [ core_extended ]; - meta = { - description = "Profiling library"; - }; + meta.description = "Profiling library"; }; csvfields = janePackage { name = "csvfields"; - hash = "1qvcm2xkpw5ca5za2dfvz154h6kzm565wvynh7fffvrj2q719flm"; + hash = "10zw4fjlniivfdzzz79lnbvcjnhk5y16m1p8mn4xbs23n6mbix0f"; propagatedBuildInputs = [ core expect_test_helpers ]; meta.description = "Runtime support for ppx_xml_conv and ppx_csv_conv"; }; ecaml = janePackage { name = "ecaml"; - hash = "1h8m8nznsyc8md8f5rx3845lpl37ijqpxkpd52w92xy5hlc9bk1k"; + hash = "1is5156q59s427x3q5nh9wsi8h1x77670bmyilqxasy39yway7g8"; propagatedBuildInputs = [ async expect_test_helpers_kernel ]; meta.description = "Writing Emacs plugin in OCaml"; }; email_message = janePackage { name = "email_message"; - hash = "0p56lak1ynqmimapsz529ankgdyd5yk90c0193q8fzv7fvvrzkzd"; + hash = "131jd72k4s8cdbgg6gyg7w5v8mphdlvdx4fgvh8d9a1m7kkvbxfg"; propagatedBuildInputs = [ async angstrom core_extended cryptokit magic-mime ounit ]; - meta = { - description = "E-mail message parser"; - }; + meta.description = "E-mail message parser"; }; incremental_kernel = janePackage { name = "incremental_kernel"; - hash = "15xw3l07fdqk5sla37fdvfnwykvq6fyrj9b2lwhc29rq0444m1yz"; + hash = "02arw8blpmnzlw5jlvavyvpgh3s9q0j9mhi2byz0x8cxknqvvasg"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Library for incremental computations depending only on core_kernel"; }; incremental = janePackage { name = "incremental"; - hash = "14hh7kxj70bpgylnx1fj3s5c40d12sgcb11cnh1xh7nwm190a9c2"; + hash = "1xchd3v4kj56wixjrsnj7m7l0374cgkzybihs2b62mn65xf6n7ki"; propagatedBuildInputs = [ core incremental_kernel ]; meta.description = "Library for incremental computations"; }; incr_map = janePackage { name = "incr_map"; - hash = "0s6c7f8a80s7bnjxcs7mdgm45i24d1j0vw4i2j884z1ssjrk33hw"; + hash = "01vx9aldxpigz5ah9h337xcw73a7r8449v8l2xbralljhs0zglx9"; propagatedBuildInputs = [ incremental_kernel ]; meta.description = "Helpers for incremental operations on map like data structures"; }; ocaml_plugin = janePackage { name = "ocaml_plugin"; - hash = "0b63ciajc9hcjs3pl0chlj475y60i3l5mjzaiqmyz1pryfqpri7r"; + hash = "0fal5j59qkbksg6ak1ngn92pcgg3f9gwfaglpxb7l6bck20kaigp"; buildInputs = [ ocamlbuild ]; propagatedBuildInputs = [ async ]; meta.description = "Automatically build and dynlink ocaml source files"; }; - parsexp = janePackage { - name = "parsexp"; - hash = "1k1z6kyp7c53l0wspz6qpvbb46bbr6aimnr06y6y1prxrpazm62w"; - propagatedBuildInputs = [ ppx_compare ppx_fields_conv ppx_js_style ppx_sexp_value ]; - meta.description = "S-expression parsing library"; - }; - parsexp_io = janePackage { name = "parsexp_io"; - hash = "0l9jrfm1zz0y6bfxla2s0fwjlvs9361ky83z3xwdlc48fgzks3a5"; - propagatedBuildInputs = [ parsexp ]; + hash = "0rhdl40jiirvv6fhgjk50n8wzs3jly5d8dyyyfgpjgl39mwkjjnb"; + propagatedBuildInputs = [ parsexp ppx_js_style ]; meta.description = "S-expression parsing library (IO functions)"; }; patience_diff = janePackage { name = "patience_diff"; - hash = "11ws6hsalmq7zc7wp37mj7zs3qaqkq4zlnwr06ybryv6vz62xj1l"; + hash = "0q7a64fgg97qcd6d8c45gyz63x5vq004axxqvvfg92b8f3x2plx4"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Tool and library implementing patience diff"; }; posixat = janePackage { name = "posixat"; - hash = "0dmjzbpbmzl94h4c1gk6k75wglnvk1kqcm4zs4nb9hy2ja8ldl9x"; - propagatedBuildInputs = [ ppx_sexp_conv ]; + hash = "04rs4sl0r4rg9m6l9kkqkmc4n87sv4a4w9ibq4zsjk9j4n6r2df8"; + propagatedBuildInputs = [ ppx_optcomp ppx_sexp_conv sexplib ]; meta.description = "Binding to the posix *at functions"; }; - protocol_version_header = janePackage { - name = "protocol_version_header"; - hash = "1vl1kfn8n1zdm3vh7228c58vprac4v7mpqks60k8rnzjj4w2mj1n"; - propagatedBuildInputs = [ core_kernel ocaml-migrate-parsetree ]; - meta.description = "Protocol aware version negotiation"; - }; - rpc_parallel = janePackage { name = "rpc_parallel"; - hash = "01nyjqgdj351ykdaqqpaljwzac48x824lzfpma64lbp6plqmjlbf"; + hash = "13dx59x73i8mkwv2qkh8gx6kk8arlvghj57k1jdscdmzmyqc9gvn"; propagatedBuildInputs = [ async ]; meta.description = "Type-safe library for building parallel applications"; }; shexp = janePackage { + version = "0.11.1"; name = "shexp"; - hash = "1ck5gcsdp93194bw6d1i116zplyaqrz1r36h6mvrw5x7i2549n9p"; + hash = "06yssp7bsmabaxvw9bqxyrsji1gkvl7if5adba3v6h4kilqy7rqg"; propagatedBuildInputs = [ posixat spawn ]; meta.description = "Process library and s-expression based shell"; }; topological_sort = janePackage { name = "topological_sort"; - hash = "08w1dx30frj2bxxk8djl23cd43sassjkrmissyhagn9fmq2l904m"; + hash = "1qnz5b1rs45lsl1ycxd1lglpmh8444gy5khhdp5fvxy987zkzklz"; propagatedBuildInputs = [ core_kernel ]; meta.description = "Topological sort algorithm"; }; diff --git a/pkgs/development/ocaml-modules/janestreet/janePackage.nix b/pkgs/development/ocaml-modules/janestreet/janePackage.nix index 5cf22341b88c..d17e595199e1 100644 --- a/pkgs/development/ocaml-modules/janestreet/janePackage.nix +++ b/pkgs/development/ocaml-modules/janestreet/janePackage.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, ocaml, jbuilder, findlib, defaultVersion ? "0.10.0" }: +{ stdenv, fetchFromGitHub, ocaml, jbuilder, findlib, defaultVersion ? "0.11.0" }: { name, version ? defaultVersion, buildInputs ? [], hash, meta, ...}@args: diff --git a/pkgs/development/ocaml-modules/nocrypto/default.nix b/pkgs/development/ocaml-modules/nocrypto/default.nix index 6e68c87b5ff0..67de1863e004 100644 --- a/pkgs/development/ocaml-modules/nocrypto/default.nix +++ b/pkgs/development/ocaml-modules/nocrypto/default.nix @@ -1,6 +1,6 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild, topkg +{ stdenv, fetchurl, fetchpatch, ocaml, findlib, ocamlbuild, topkg , cpuid, ocb-stubblr -, cstruct, zarith, ppx_sexp_conv, sexplib +, cstruct, zarith, ppx_sexp_conv , cstruct-lwt ? null }: @@ -11,16 +11,34 @@ stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-nocrypto-${version}"; version = "0.5.4"; - src = fetchFromGitHub { - owner = "mirleft"; - repo = "ocaml-nocrypto"; - rev = "v${version}"; - sha256 = "0nhnlpbqh3mf9y2cxivlvfb70yfbdpvg6jslzq64xblpgjyg443p"; + src = fetchurl { + url = "https://github.com/mirleft/ocaml-nocrypto/releases/download/v${version}/nocrypto-${version}.tbz"; + sha256 = "0zshi9hlhcz61n5z1k6fx6rsi0pl4xgahsyl2jp0crqkaf3hqwlg"; }; - buildInputs = [ ocaml findlib ocamlbuild topkg cpuid ocb-stubblr - ppx_sexp_conv ]; - propagatedBuildInputs = [ cstruct zarith sexplib ] ++ optional withLwt cstruct-lwt; + unpackCmd = "tar xjf $curSrc"; + + patches = [ + (fetchpatch { + url = "https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/nocrypto/nocrypto.0.5.4-1/files/0001-add-missing-runtime-dependencies-in-_tags.patch"; + sha256 = "1asybwj3rl07b4q4cxwy80a7j17j0i5vzz77p38hymilhc2ky7xn"; + }) + (fetchpatch { + url = "https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/nocrypto/nocrypto.0.5.4-1/files/0002-add-ppx_sexp_conv-as-a-runtime-dependency-in-the-pac.patch"; + sha256 = "0zmp64n5fgkawpkyw0vv0bg0i2c3xbsxqy17vwy92nf5rbardi1r"; + }) + (fetchpatch { + url = "https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/nocrypto/nocrypto.0.5.4-1/files/0003-Auto-detect-ppx_sexp_conv-runtime-library.patch"; + sha256 = "0lngbg5gyd5gs56lbjh6g86cps1y8x1xsqzi0vi1v28al1gn5dhw"; + }) + (fetchpatch { + url = "https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/nocrypto/nocrypto.0.5.4-1/files/0004-pack-package-workaround-ocamlbuild-272.patch"; + sha256 = "16k0w78plvqhl17qiqq1mckxhhcdysqgs94l54a1bn0l6fx3rvb9"; + }) + ]; + + buildInputs = [ ocaml findlib ocamlbuild topkg cpuid ocb-stubblr ]; + propagatedBuildInputs = [ cstruct ppx_sexp_conv zarith ] ++ optional withLwt cstruct-lwt; buildPhase = "${topkg.buildPhase} --with-lwt ${boolToString withLwt}"; inherit (topkg) installPhase; diff --git a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix index b88000eeb32a..9a2af140e312 100644 --- a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix +++ b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix @@ -6,24 +6,19 @@ else stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-ocaml-migrate-parsetree-${version}"; - version = "1.0.7"; + version = "1.0.11"; src = fetchFromGitHub { - owner = "let-def"; + owner = "ocaml-ppx"; repo = "ocaml-migrate-parsetree"; rev = "v${version}"; - sha256 = "0v1h943xv5bd8qy5mr8pvyjbgamhs59nkgr94j3vznabrcfqzkh7"; + sha256 = "05kbgs9n1x64fk6g3wbjnwjd17w10k3k8dzglnc45xg4hr7z651n"; }; buildInputs = [ ocaml findlib ocamlbuild jbuilder ]; propagatedBuildInputs = [ result ]; - installPhase = '' - for p in *.install - do - ${jbuilder.installPhase} $p - done - ''; + inherit (jbuilder) installPhase; meta = { description = "Convert OCaml parsetrees between different major versions"; diff --git a/pkgs/development/ocaml-modules/ppxlib/default.nix b/pkgs/development/ocaml-modules/ppxlib/default.nix new file mode 100644 index 000000000000..889e4acd2b50 --- /dev/null +++ b/pkgs/development/ocaml-modules/ppxlib/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, ocaml, findlib, jbuilder +, ocaml-compiler-libs, ocaml-migrate-parsetree, ppx_derivers, stdio +}: + +stdenv.mkDerivation rec { + version = "0.3.0"; + name = "ocaml${ocaml.version}-ppxlib-${version}"; + + src = fetchFromGitHub { + owner = "ocaml-ppx"; + repo = "ppxlib"; + rev = version; + sha256 = "0csp49jh7zgjnqh46mxbf322whlbmgy7v1a12nvxh97qg6i5fvsy"; + }; + + buildInputs = [ ocaml findlib jbuilder ]; + + propagatedBuildInputs = [ + ocaml-compiler-libs ocaml-migrate-parsetree ppx_derivers stdio + ]; + + buildPhase = "jbuilder build"; + + inherit (jbuilder) installPhase; + + meta = { + description = "Comprehensive ppx tool set"; + license = stdenv.lib.licenses.mit; + maintainers = [ stdenv.lib.maintainers.vbgl ]; + inherit (src.meta) homepage; + inherit (ocaml.meta) platforms; + }; + +} diff --git a/pkgs/development/ocaml-modules/tls/default.nix b/pkgs/development/ocaml-modules/tls/default.nix index 39f82772ffce..1e031b135d29 100644 --- a/pkgs/development/ocaml-modules/tls/default.nix +++ b/pkgs/development/ocaml-modules/tls/default.nix @@ -6,6 +6,10 @@ with stdenv.lib; let withLwt = lwt != null; in +if !versionAtLeast ocaml.version "4.04" +then throw "tls is not available for OCaml ${ocaml.version}" +else + stdenv.mkDerivation rec { version = "0.9.0"; name = "ocaml${ocaml.version}-tls-${version}"; diff --git a/pkgs/development/ocaml-modules/uri/default.nix b/pkgs/development/ocaml-modules/uri/default.nix index 5059ef24aa32..c846cca1282f 100644 --- a/pkgs/development/ocaml-modules/uri/default.nix +++ b/pkgs/development/ocaml-modules/uri/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, ocaml, findlib, jbuilder, ppx_sexp_conv, ounit -, ppx_deriving, re, sexplib, stringext +, re, sexplib, stringext }: stdenv.mkDerivation rec { @@ -13,8 +13,8 @@ stdenv.mkDerivation rec { unpackCmd = "tar -xjf $curSrc"; - buildInputs = [ ocaml findlib jbuilder ppx_sexp_conv ounit ]; - propagatedBuildInputs = [ ppx_deriving re sexplib stringext ]; + buildInputs = [ ocaml findlib jbuilder ounit ]; + propagatedBuildInputs = [ ppx_sexp_conv re sexplib stringext ]; buildPhase = "jbuilder build"; diff --git a/pkgs/development/ocaml-modules/zarith/default.nix b/pkgs/development/ocaml-modules/zarith/default.nix index 5dc6a9056ada..e5d954970589 100644 --- a/pkgs/development/ocaml-modules/zarith/default.nix +++ b/pkgs/development/ocaml-modules/zarith/default.nix @@ -5,9 +5,9 @@ assert stdenv.lib.versionAtLeast ocaml.version "3.12.1"; let param = if stdenv.lib.versionAtLeast ocaml.version "4.02" then { - version = "1.4.1"; - url = http://forge.ocamlcore.org/frs/download.php/1574/zarith-1.4.1.tgz; - sha256 = "0l36hzmfbvdai2kcgynh13vfdim5x2grnaw61fxqalyjm90c3di3"; + version = "1.7"; + url = https://github.com/ocaml/Zarith/archive/release-1.7.tar.gz; + sha256 = "0fmblap5nsbqq0dab63d6b7lsxpc3snkgz7jfldi2qa4s1kbnhfn"; } else { version = "1.3"; url = http://forge.ocamlcore.org/frs/download.php/1471/zarith-1.3.tgz; diff --git a/pkgs/development/perl-modules/lwp-protocol-https-cert-file.patch b/pkgs/development/perl-modules/lwp-protocol-https-cert-file.patch index 119c8b61da36..e9b501c29e26 100644 --- a/pkgs/development/perl-modules/lwp-protocol-https-cert-file.patch +++ b/pkgs/development/perl-modules/lwp-protocol-https-cert-file.patch @@ -1,15 +1,31 @@ -diff -ru -x '*~' LWP-Protocol-https-6.04-orig/lib/LWP/Protocol/https.pm LWP-Protocol-https-6.04/lib/LWP/Protocol/https.pm ---- LWP-Protocol-https-6.04-orig/lib/LWP/Protocol/https.pm 2013-04-29 23:16:18.000000000 +0200 -+++ LWP-Protocol-https-6.04/lib/LWP/Protocol/https.pm 2016-03-02 14:59:01.639844511 +0100 -@@ -24,6 +24,11 @@ +From 321401098f2c86a6f68e186cfc06e030b09484b6 Mon Sep 17 00:00:00 2001 +From: Tyson Whitehead <twhitehead@gmail.com> +Date: Fri, 29 Jun 2018 15:47:00 -0400 +Subject: [PATCH] Respect NIX_SSL_CERT_FILE and SSL_CERT_FILE (in that order) + +--- + lib/LWP/Protocol/https.pm | 8 ++++++++ + 1 file changed, 8 insertions(+) + +diff --git a/lib/LWP/Protocol/https.pm b/lib/LWP/Protocol/https.pm +index f7230e2..c78b9ce 100644 +--- a/lib/LWP/Protocol/https.pm ++++ b/lib/LWP/Protocol/https.pm +@@ -23,6 +23,14 @@ sub _extra_sock_opts + $ssl_opts{SSL_verify_mode} = 0; } if ($ssl_opts{SSL_verify_mode}) { - unless (exists $ssl_opts{SSL_ca_file} || exists $ssl_opts{SSL_ca_path}) { -+ $ssl_opts{SSL_ca_file} = $ENV{'SSL_CERT_FILE'}; ++ unless (exists $ssl_opts{SSL_ca_file} || exists $ssl_opts{SSL_ca_path}) { ++ $ssl_opts{SSL_ca_file} = $ENV{'NIX_SSL_CERT_FILE'} ++ if !defined $ssl_opts{SSL_ca_file}; ++ $ssl_opts{SSL_ca_file} = $ENV{'SSL_CERT_FILE'} ++ if !defined $ssl_opts{SSL_ca_file}; + $ssl_opts{SSL_ca_file} = "/etc/ssl/certs/ca-certificates.crt" + if !defined $ssl_opts{SSL_ca_file} && -e "/etc/ssl/certs/ca-certificates.crt"; + } -+ unless (exists $ssl_opts{SSL_ca_file} || exists $ssl_opts{SSL_ca_path}) { + unless (exists $ssl_opts{SSL_ca_file} || exists $ssl_opts{SSL_ca_path}) { eval { require Mozilla::CA; - }; +-- +2.14.0 + diff --git a/pkgs/development/pharo/vm/default.nix b/pkgs/development/pharo/vm/default.nix index e6269503a4c4..b995e0e2540a 100644 --- a/pkgs/development/pharo/vm/default.nix +++ b/pkgs/development/pharo/vm/default.nix @@ -1,7 +1,7 @@ -{ stdenv, callPackage, callPackage_i686, makeWrapper, ...} @pkgs: +{ stdenv, callPackage, pkgsi686Linux, makeWrapper, ...} @pkgs: let - i686 = callPackage_i686 ./vms.nix {}; + i686 = pkgsi686Linux.callPackage ./vms.nix {}; native = callPackage ./vms.nix {}; in @@ -11,5 +11,3 @@ rec { spur64 = if stdenv.is64bit then native.spur else "none"; multi-vm-wrapper = callPackage ../wrapper { inherit cog32 spur32 spur64; }; } - - diff --git a/pkgs/development/python-modules/agate/default.nix b/pkgs/development/python-modules/agate/default.nix index 57a34268df86..b0992141faa0 100644 --- a/pkgs/development/python-modules/agate/default.nix +++ b/pkgs/development/python-modules/agate/default.nix @@ -1,26 +1,37 @@ -{ stdenv, fetchPypi, buildPythonPackage, isPy3k, - discid, six, parsedatetime, isodate, Babel, pytimeparse, - leather, python-slugify }: +{ lib, fetchFromGitHub, buildPythonPackage, isPy3k +, six, pytimeparse, parsedatetime, Babel +, isodate, python-slugify, leather +, glibcLocales, nose, lxml, cssselect, unittest2 }: buildPythonPackage rec { - pname = "agate"; - version = "1.6.1"; + pname = "agate"; + version = "1.6.1"; - src = fetchPypi { - inherit pname version; - sha256 = "c93aaa500b439d71e4a5cf088d0006d2ce2c76f1950960c8843114e5f361dfd3"; - }; + # PyPI tarball does not include all test files + # https://github.com/wireservice/agate/pull/716 + src = fetchFromGitHub { + owner = "wireservice"; + repo = pname; + rev = version; + sha256 = "077zj8xad8hsa3nqywvf7ircirmx3krxdipl8wr3dynv3l3khcpl"; + }; - propagatedBuildInputs = [ discid six parsedatetime - isodate Babel pytimeparse leather python-slugify ]; + propagatedBuildInputs = [ + six pytimeparse parsedatetime Babel + isodate python-slugify leather + ]; - doCheck = !isPy3k; - # (only) on python3 unittest loader (loadTestsFromModule) fails + checkInputs = [ glibcLocales nose lxml cssselect ] + ++ lib.optional (!isPy3k) unittest2; - meta = with stdenv.lib; { - description = "A Python data analysis library that is optimized for humans instead of machines"; - homepage = https://github.com/wireservice/agate; - license = with licenses; [ mit ]; - maintainers = with maintainers; [ vrthra ]; - }; + checkPhase = '' + LC_ALL="en_US.UTF-8" nosetests tests + ''; + + meta = with lib; { + description = "A Python data analysis library that is optimized for humans instead of machines"; + homepage = https://github.com/wireservice/agate; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ vrthra ]; + }; } diff --git a/pkgs/development/python-modules/alembic/default.nix b/pkgs/development/python-modules/alembic/default.nix index 3fcf0973e7ad..7becf1cffc41 100644 --- a/pkgs/development/python-modules/alembic/default.nix +++ b/pkgs/development/python-modules/alembic/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "alembic"; - version = "0.9.9"; + version = "0.9.10"; src = fetchPypi { inherit pname version; - sha256 = "85bd3ea7633024e4930900bc64fb58f9742dedbc6ebb6ecf25be2ea9a3c1b32e"; + sha256 = "1cd32df9a3b8c1749082ef60ffbe05ff16617b6afadfdabc680dcb9344af33d7"; }; buildInputs = [ pytest pytestcov mock coverage ]; diff --git a/pkgs/development/python-modules/asyncssh/default.nix b/pkgs/development/python-modules/asyncssh/default.nix index ef21cb001b49..6308b1a170fb 100644 --- a/pkgs/development/python-modules/asyncssh/default.nix +++ b/pkgs/development/python-modules/asyncssh/default.nix @@ -4,12 +4,12 @@ buildPythonPackage rec { pname = "asyncssh"; - version = "1.13.1"; + version = "1.13.2"; disabled = pythonOlder "3.4"; src = fetchPypi { inherit pname version; - sha256 = "a44736830741e2bb9c4e3992819288b77ac4af217a46d12f415bb57c18ed9c22"; + sha256 = "e4c07577d021c68d4c8e6d1897987424cc25b58e0726f31ff72476a34ddb6deb"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/authres/default.nix b/pkgs/development/python-modules/authres/default.nix new file mode 100644 index 000000000000..b5aad787dfbf --- /dev/null +++ b/pkgs/development/python-modules/authres/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchPypi, buildPythonPackage, python }: + +buildPythonPackage rec { + pname = "authres"; + version = "1.1.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "1mcllhrwr23hwa2jn3m15k29ks1205ymwafjzchh8ma664hnzv6v"; + }; + + checkPhase = '' + # run doctests + ${python.interpreter} -m authres + ''; + + meta = with stdenv.lib; { + description = "Email Authentication-Results Headers generation and parsing for Python/Python3"; + longDescription = '' + Python module that implements various internet RFC's: 5451/7001/7601 + Authentication-Results Headers generation and parsing for + Python/Python3. + ''; + homepage = https://launchpad.net/authres; + license = licenses.bsd3; + maintainers = with maintainers; [ leenaars ]; + }; +} diff --git a/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix b/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix index 7f4faa8a8b47..3cd37617a393 100644 --- a/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix +++ b/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix @@ -1,26 +1,35 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , pytest , pythonOlder }: if !(pythonOlder "3.3") then null else buildPythonPackage rec { pname = "backports.shutil_get_terminal_size"; - version = "1.0.0"; + version = "unstable-2016-02-21"; - src = fetchPypi { - inherit pname version; - sha256 = "713e7a8228ae80341c70586d1cc0a8caa5207346927e23d09dcbcaf18eadec80"; + # there have been numerous fixes commited since the initial release. + # Most notably fixing a problem where the backport would always return + # terminal size 0. See https://trac.sagemath.org/ticket/25320#comment:5. + # Unfortunately the maintainer seems inactive and has not responded to + # a request for a new release since 2016: + # https://github.com/chrippa/backports.shutil_get_terminal_size/issues/7 + src = fetchFromGitHub { + owner = "chrippa"; + repo = "backports.shutil_get_terminal_size"; + rev = "159e269450dbf37c3a837f6ea7e628d59acbb96a"; + sha256 = "17sgv8vg0xxfdnca45l1mmwwvj29gich5c8kqznnj51kfccch7sg"; }; checkInputs = [ pytest ]; - meta = { + meta = with lib; { description = "A backport of the get_terminal_size function from Python 3.3’s shutil."; homepage = https://github.com/chrippa/backports.shutil_get_terminal_size; - license = with lib.licenses; [ mit ]; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ timokau ]; }; -} \ No newline at end of file +} diff --git a/pkgs/development/python-modules/boto3/default.nix b/pkgs/development/python-modules/boto3/default.nix index 042ad9cf7932..b3a15ba08682 100644 --- a/pkgs/development/python-modules/boto3/default.nix +++ b/pkgs/development/python-modules/boto3/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "boto3"; - version = "1.7.9"; + version = "1.7.48"; src = fetchFromGitHub { owner = "boto"; repo = "boto3"; rev = version; - sha256 = "0yqym19nlayjm1qlh6vvinmk5xw0zskil971n2v9s65ray7sn5lv"; + sha256 = "0pag37yy6693k8xvlyx4f06asab52i89xljy2ip121i60ih3jfw4"; }; propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ]; diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix index 68b5abd906d9..fada751968b3 100644 --- a/pkgs/development/python-modules/botocore/default.nix +++ b/pkgs/development/python-modules/botocore/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "botocore"; - version = "1.10.9"; + version = "1.10.48"; src = fetchPypi { inherit pname version; - sha256 = "19vlf2w05h9818hrhx8al4r9ngfhvhf2pxcwka9s7bc51qnhx4xh"; + sha256 = "1432drc7482nwrppwkk1i6ars3wz9w2g9rsxkz5nlxmyf9qm260j"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-extensions/default.nix b/pkgs/development/python-modules/django-extensions/default.nix index 18fd685f3c2d..3548e930ab3d 100644 --- a/pkgs/development/python-modules/django-extensions/default.nix +++ b/pkgs/development/python-modules/django-extensions/default.nix @@ -1,24 +1,36 @@ -{ stdenv, buildPythonPackage, fetchFromGitHub -, vobject, mock, tox, pytestcov, pytest-django, pytest, shortuuid -, django, six +{ lib, buildPythonPackage, fetchFromGitHub, pythonOlder +, six, typing +, django, shortuuid, python-dateutil, pytest +, pytest-django, pytestcov, mock, vobject +, werkzeug, glibcLocales }: buildPythonPackage rec { pname = "django-extensions"; - version = "1.8.1"; + version = "2.0.7"; src = fetchFromGitHub { - owner = "${pname}"; - repo = "${pname}"; - rev = "${version}"; - sha256 = "08rd9zswvjb9dixzyd3p3l3hw3wwhqkgyjvid65niybzjl1xdb5h"; + owner = pname; + repo = pname; + rev = version; + sha256 = "1xf84wq7ab1zfb3nmf4qgw6mjf5xafjwr3175dyrqrrn6cpvcr4a"; }; - buildInputs = [ vobject mock tox pytestcov pytest-django pytest shortuuid ]; + postPatch = '' + substituteInPlace setup.py --replace "'tox'," "" + ''; - propagatedBuildInputs = [ django six ]; + propagatedBuildInputs = [ six ] ++ lib.optional (pythonOlder "3.5") typing; - meta = with stdenv.lib; { + checkInputs = [ + django shortuuid python-dateutil pytest + pytest-django pytestcov mock vobject + werkzeug glibcLocales + ]; + + LC_ALL = "en_US.UTF-8"; + + meta = with lib; { description = "A collection of custom extensions for the Django Framework"; homepage = https://github.com/django-extensions/django-extensions; license = licenses.mit; diff --git a/pkgs/development/python-modules/dkimpy/default.nix b/pkgs/development/python-modules/dkimpy/default.nix index 01224515d926..dabc3244592a 100644 --- a/pkgs/development/python-modules/dkimpy/default.nix +++ b/pkgs/development/python-modules/dkimpy/default.nix @@ -1,38 +1,25 @@ -{ stdenv, fetchurl, openssl, makeWrapper, buildPythonApplication -, pytest, dnspython }: +{ stdenv, fetchPypi, openssl, makeWrapper, buildPythonPackage +, pytest, dnspython, pynacl, authres, python }: -let - majorversion = "0.6"; - minorversion = "2"; -in buildPythonApplication rec { +buildPythonPackage rec { pname = "dkimpy"; - version = "${majorversion}.${minorversion}"; + version = "0.8.1"; - src = fetchurl { - url = "https://launchpad.net/${pname}/${majorversion}/${majorversion}.${minorversion}/+download/${pname}-${version}.tar.gz"; - sha256 = "1hagz8qk0v4ijfbcdq4z28bpgr2mkpr498z76i1vam2d50chmakl"; - }; + src = fetchPypi { + inherit pname version; + sha256 = "125xakqg2j5jp4k5kafpnpazh9d97ysgayrsgpvm3nkdj4g8hw1j"; +}; checkInputs = [ pytest ]; - propagatedBuildInputs = [ openssl dnspython ]; + propagatedBuildInputs = [ openssl dnspython pynacl authres ]; patchPhase = '' - substituteInPlace dknewkey.py --replace \ + substituteInPlace dkim/dknewkey.py --replace \ /usr/bin/openssl ${openssl}/bin/openssl ''; checkPhase = '' - python ./test.py - ''; - - postInstall = '' - mkdir -p $out/bin $out/libexec - mv $out/bin/*.py $out/libexec - makeWrapper "$out/libexec/dkimverify.py" $out/bin/dkimverify - makeWrapper "$out/libexec/dkimsign.py" $out/bin/dkimsign - makeWrapper "$out/libexec/arcverify.py" $out/bin/arcverify - makeWrapper "$out/libexec/arcsign.py" $out/bin/arcsign - makeWrapper "$out/libexec/dknewkey.py" $out/bin/dknewkey + ${python.interpreter} ./test.py ''; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/dogtail/default.nix b/pkgs/development/python-modules/dogtail/default.nix new file mode 100644 index 000000000000..2d193616e5f6 --- /dev/null +++ b/pkgs/development/python-modules/dogtail/default.nix @@ -0,0 +1,58 @@ +{ lib +, buildPythonPackage +, python +, pygobject3 +, pyatspi +, pycairo +, at-spi2-core +, gobjectIntrospection +, gtk3 +, gsettings-desktop-schemas +, fetchurl +, dbus +, xvfb_run +# , fetchPypi +}: + +buildPythonPackage rec { + pname = "dogtail"; + version = "0.9.10"; + + # https://gitlab.com/dogtail/dogtail/issues/1 + # src = fetchPypi { + # inherit pname version; + # sha256 = "0p5wfssvzr9w0bvhllzbbd8fnp4cca2qxcpcsc33dchrmh5n552x"; + # }; + src = fetchurl { + url = https://gitlab.com/dogtail/dogtail/raw/released/dogtail-0.9.10.tar.gz; + sha256 = "14sycidl8ahj3fwlhpwlpnyd43c302yqr7nqg2hj39pyj7kgk15b"; + }; + + patches = [ + ./nix-support.patch + ]; + + nativeBuildInputs = [ gobjectIntrospection dbus xvfb_run ]; # for setup hooks + propagatedBuildInputs = [ at-spi2-core gtk3 pygobject3 pyatspi pycairo ]; + + checkPhase = '' + runHook preCheck + export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:$XDG_DATA_DIRS + # export NO_AT_BRIDGE=1 + gsettings set org.gnome.desktop.interface toolkit-accessibility true + xvfb-run -s '-screen 0 800x600x24' dbus-run-session \ + --config-file=${dbus.daemon}/share/dbus-1/session.conf \ + ${python.interpreter} nix_run_setup test + runHook postCheck + ''; + + # TODO: Tests require accessibility + doCheck = false; + + meta = { + description = "GUI test tool and automation framework that uses Accessibility technologies to communicate with desktop applications"; + homepage = https://gitlab.com/dogtail/dogtail; + license = lib.licenses.gpl2; + maintainers = with lib.maintainers; [ jtojnar ]; + }; +} diff --git a/pkgs/development/python-modules/dogtail/nix-support.patch b/pkgs/development/python-modules/dogtail/nix-support.patch new file mode 100644 index 000000000000..e8a65bbc87be --- /dev/null +++ b/pkgs/development/python-modules/dogtail/nix-support.patch @@ -0,0 +1,35 @@ +--- a/dogtail/distro.py ++++ b/dogtail/distro.py +@@ -233,6 +233,11 @@ + PackageDb.__init__(self) + + ++class _NixPackageDb(PackageDb): # pragma: no cover ++ def __init__(self): ++ PackageDb.__init__(self) ++ ++ + class JhBuildPackageDb(PackageDb): # pragma: no cover + def __init__(self): + PackageDb.__init__(self) +@@ -324,6 +329,11 @@ + self.packageDb = _SolarisPackageDb() + + ++class Nix(Distro): # pragma: no cover ++ def __init__(self): ++ self.packageDb = _NixPackageDb() ++ ++ + class JHBuild(Distro): # pragma: no cover + def __init__(self): + self.packageDb = JhBuildPackageDb() +@@ -358,6 +368,8 @@ + elif os.path.exists("/etc/release") and \ + re.match(".*Solaris", open("/etc/release").readline()): # pragma: no cover + distro = Solaris() # pragma: no cover ++ elif os.path.exists("/nix/store"): # pragma: no cover ++ distro = Nix() # pragma: no cover + elif os.path.exists("/etc/os-release") and \ + re.match(".*GNOME-Continuous", open("/etc/os-release").readline()): # pragma: no cover + distro = GnomeContinuous() # pragma: no cover diff --git a/pkgs/development/python-modules/flask-autoindex/default.nix b/pkgs/development/python-modules/flask-autoindex/default.nix index f36d7fbca1c4..0c353a34c385 100644 --- a/pkgs/development/python-modules/flask-autoindex/default.nix +++ b/pkgs/development/python-modules/flask-autoindex/default.nix @@ -1,6 +1,6 @@ { stdenv , buildPythonPackage -, fetchFromGitHub +, fetchPypi , flask , flask-silk , future @@ -8,16 +8,11 @@ buildPythonPackage rec { pname = "Flask-AutoIndex"; - version = "2018-06-28"; + version = "0.6.1"; - # master fixes various issues (binary generation, flask syntax) and has no - # major changes - # new release requested: https://github.com/sublee/flask-autoindex/issues/38 - src = fetchFromGitHub { - owner = "sublee"; - repo = "flask-autoindex"; - rev = "e3d449a89d56bf4c171c7c8d90af028e579782cf"; - sha256 = "0bwq2nid4h8vrxspggk064vra4wd804cl2ryyx4j2d1dyywmgjgy"; + src = fetchPypi { + inherit pname version; + sha256 = "0v87sa073hmj64f47sazbiw08kyxsxay100bd5084jwq7c1y92d7"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flask-restful/default.nix b/pkgs/development/python-modules/flask-restful/default.nix index a57823a09872..41735c4d1c6e 100644 --- a/pkgs/development/python-modules/flask-restful/default.nix +++ b/pkgs/development/python-modules/flask-restful/default.nix @@ -1,4 +1,4 @@ -{ stdenv, buildPythonPackage, fetchPypi, isPy3k +{ lib, buildPythonPackage, fetchPypi, fetchpatch, isPy3k , nose, mock, blinker , flask, six, pytz, aniso8601, pycrypto }: @@ -12,19 +12,27 @@ buildPythonPackage rec { sha256 = "01rlvl2iq074ciyn4schmjip7cyplkwkysbb8f610zil06am35ap"; }; -# TypeError: Only byte strings can be passed to C code - patchPhase = if isPy3k then '' + patches = [ + (fetchpatch { + url = https://github.com/flask-restful/flask-restful/commit/54979f0a49b2217babc53c5b65b5df10b6de8e05.patch; + sha256 = "11s6ag6l42g61ccg5jw9j1f26hwgjfa3sp890cbl5r4hy5ycpyr5"; + }) + (fetchpatch { + url = https://github.com/flask-restful/flask-restful/commit/f45e81a45ed03922fd225afe27006315811077e6.patch; + sha256 = "16avd369j5r08d1l23mwbba26zjwnmfqvfvnfz02am3gr5l6p3gl"; + }) + ]; + + postPatch = lib.optionalString isPy3k '' + # TypeError: Only byte strings can be passed to C code rm tests/test_crypto.py tests/test_paging.py - '' else null; -# Disable test broken with aniso > 3.0.0, can be removed when updating to a flask-restful version with commit 54979f0 - preCheck = '' - substituteInPlace "./tests/test_inputs.py" --replace "test_bad_isointervals" "disabled_bad_isointervals" ''; - buildInputs = [ nose mock blinker ]; + + checkInputs = [ nose mock blinker ]; + propagatedBuildInputs = [ flask six pytz aniso8601 pycrypto ]; - PYTHON_EGG_CACHE = "`pwd`/.egg-cache"; - meta = with stdenv.lib; { + meta = with lib; { homepage = "http://flask-restful.readthedocs.io/"; description = "REST API building blocks for Flask"; license = licenses.bsd3; diff --git a/pkgs/development/python-modules/google-api-python-client/default.nix b/pkgs/development/python-modules/google-api-python-client/default.nix index 72172c4a2586..7f71a4ed3ef2 100644 --- a/pkgs/development/python-modules/google-api-python-client/default.nix +++ b/pkgs/development/python-modules/google-api-python-client/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchPypi -, httplib2, six, google-auth-httplib2, uritemplate }: +, httplib2, google_auth, google-auth-httplib2, six, uritemplate, oauth2client }: buildPythonPackage rec { pname = "google-api-python-client"; @@ -13,7 +13,7 @@ buildPythonPackage rec { # No tests included in archive doCheck = false; - propagatedBuildInputs = [ httplib2 google-auth-httplib2 six uritemplate ]; + propagatedBuildInputs = [ httplib2 google_auth google-auth-httplib2 six uritemplate oauth2client ]; meta = with lib; { description = "The core Python library for accessing Google APIs"; diff --git a/pkgs/development/python-modules/google_cloud_speech/default.nix b/pkgs/development/python-modules/google_cloud_speech/default.nix index 56882c5269ad..8cf3fe5753ee 100644 --- a/pkgs/development/python-modules/google_cloud_speech/default.nix +++ b/pkgs/development/python-modules/google_cloud_speech/default.nix @@ -1,5 +1,5 @@ { stdenv, buildPythonPackage, fetchPypi -, setuptools, google_api_core, google_gax, google_cloud_core, pytest, mock }: +, google_api_core, pytest, mock }: buildPythonPackage rec { pname = "google-cloud-speech"; @@ -10,7 +10,7 @@ buildPythonPackage rec { sha256 = "8396646aa9de210bacb144fabd82ab5fe577b3b11708725c879b72c96009d631"; }; - propagatedBuildInputs = [ setuptools google_api_core google_gax google_cloud_core ]; + propagatedBuildInputs = [ google_api_core ]; checkInputs = [ pytest mock ]; # needs credentials diff --git a/pkgs/development/python-modules/google_gax/default.nix b/pkgs/development/python-modules/google_gax/default.nix deleted file mode 100644 index daabba6c390a..000000000000 --- a/pkgs/development/python-modules/google_gax/default.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ stdenv, buildPythonPackage, fetchPypi -, google_auth, ply, protobuf, grpcio, requests -, googleapis_common_protos, dill, future, pytest, mock, unittest2 }: - -buildPythonPackage rec { - pname = "google-gax"; - version = "0.16.0"; - - src = fetchPypi { - inherit pname version; - sha256 = "1d844c56f942d98f12a1b0ecabe8a17d69bef41ff513edd97253bcde02ffd929"; - }; - - propagatedBuildInputs = [ google_auth ply protobuf grpcio requests googleapis_common_protos dill future ]; - checkInputs = [ pytest mock unittest2 ]; - - # Importing test__grpc_google_auth fails with "ModuleNotFoundError: No module named 'google_auth_httplib2'", where - # that file would be is unclear to me so I just remove the test. - postPatch = ''rm tests/test__grpc_google_auth.py''; - - checkPhase = '' - py.test - ''; - - meta = with stdenv.lib; { - description = "Google API Extensions for Python (gax-python) tools based on gRPC and Google API conventions."; - homepage = "http://gax-python.readthedocs.io/en/latest/"; - license = licenses.bsd3; - maintainers = with maintainers; [ vanschelven ]; - }; -} diff --git a/pkgs/development/python-modules/grpcio-tools/default.nix b/pkgs/development/python-modules/grpcio-tools/default.nix new file mode 100644 index 000000000000..8d4c925acf87 --- /dev/null +++ b/pkgs/development/python-modules/grpcio-tools/default.nix @@ -0,0 +1,25 @@ +{ stdenv, buildPythonPackage, fetchPypi, lib, grpc, grpcio}: + +buildPythonPackage rec { + pname = "grpcio-tools"; + version = "1.13.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "1ck6818kb4nb6skm9lqg492brqs7kfk65f4hh2c7h7c8pkbrpcw1"; + }; + + enableParallelBuilding = true; + + propagatedBuildInputs = [ grpc grpcio ]; + + # no tests in the package + doCheck = false; + + meta = with stdenv.lib; { + description = "Protobuf code generator for gRPC"; + license = lib.licenses.asl20; + homepage = "https://grpc.io/grpc/python/"; + maintainers = with maintainers; [ vanschelven ]; + }; +} diff --git a/pkgs/development/python-modules/grpcio/default.nix b/pkgs/development/python-modules/grpcio/default.nix index 265b631e1125..e53989bcbcfd 100644 --- a/pkgs/development/python-modules/grpcio/default.nix +++ b/pkgs/development/python-modules/grpcio/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "grpcio"; - version = "1.12.1"; + version = "1.13.0"; src = fetchPypi { inherit pname version; - sha256 = "f14faadfd09aa8526536cd2149e274563f45b767fca1736ccc53803a6af3f90e"; + sha256 = "6324581e215157f0fbe335dff2e21a65b4406db98ac7cca05f1e23b4f510b426"; }; propagatedBuildInputs = [ six protobuf ] @@ -16,7 +16,7 @@ buildPythonPackage rec { meta = with stdenv.lib; { description = "HTTP/2-based RPC framework"; - license = lib.licenses.bsd3; + license = lib.licenses.asl20; homepage = "https://grpc.io/grpc/python/"; maintainers = with maintainers; [ vanschelven ]; }; diff --git a/pkgs/development/python-modules/keyutils/default.nix b/pkgs/development/python-modules/keyutils/default.nix index b07dd4abd0d2..907af4d250b3 100644 --- a/pkgs/development/python-modules/keyutils/default.nix +++ b/pkgs/development/python-modules/keyutils/default.nix @@ -1,17 +1,19 @@ -{ lib, buildPythonPackage, fetchPypi, keyutils, pytestrunner }: +{ lib, buildPythonPackage, fetchFromGitHub, keyutils, pytestrunner, pytest }: buildPythonPackage rec { pname = "keyutils"; version = "0.5"; - src = fetchPypi { - inherit pname version; - sha256 = "0dskys71vkn59vlsfs1ljli0qnzk7b10iv4pawxawnk2hvyjrf10"; + # github version comes bundled with tests + src = fetchFromGitHub { + owner = "sassoftware"; + repo = "python-keyutils"; + rev = "v${version}"; + sha256 = "1gga60w8sb3r5bxa0bfp7d7wzg6s3db5y7aizr14p2pvp92d8bdi"; }; - checkInputs = [ keyutils pytestrunner ]; - - doCheck = false; + buildInputs = [ keyutils ]; + checkInputs = [ pytest pytestrunner ]; meta = { description = "A set of python bindings for keyutils"; diff --git a/pkgs/development/python-modules/klaus/default.nix b/pkgs/development/python-modules/klaus/default.nix index 0740cfa84bb7..1629c55a439e 100644 --- a/pkgs/development/python-modules/klaus/default.nix +++ b/pkgs/development/python-modules/klaus/default.nix @@ -2,13 +2,13 @@ python.pkgs.buildPythonPackage rec { pname = "klaus"; - version = "1.2.2"; + version = "1.3.0"; src = fetchFromGitHub { owner = "jonashaag"; repo = pname; rev = version; - sha256 = "0hkl1ycyd5ccijmknr3yfp3ga43y01m7390xnibqqgaisfvcm9wp"; + sha256 = "04zjvrpx66x2c0v74nvmq8x7s7c8994cv1zwd5hfn9alq82hqcgr"; }; prePatch = '' @@ -35,6 +35,6 @@ python.pkgs.buildPythonPackage rec { description = "The first Git web viewer that Just Works"; homepage = https://github.com/jonashaag/klaus; license = licenses.isc; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ pSub ]; }; } diff --git a/pkgs/development/python-modules/matrix-client/default.nix b/pkgs/development/python-modules/matrix-client/default.nix index 34ec95b866f5..19c4baca8b29 100644 --- a/pkgs/development/python-modules/matrix-client/default.nix +++ b/pkgs/development/python-modules/matrix-client/default.nix @@ -2,26 +2,22 @@ , buildPythonPackage , fetchPypi , requests -, tox, pytest, flake8, responses +, pytest, pytestrunner, responses }: buildPythonPackage rec { - pname = "matrix-client"; - version = "0.2.0"; + pname = "matrix_client"; + version = "0.3.2"; src = fetchPypi { inherit pname version; - sha256 = "b96e87adf1bc2270166b2a4cff1320d2ef283779ea8b3c4edd0d9051fc7b7924"; + sha256 = "1mgjd0ymf9mvqjkvgx3xjhxap7rzdmpa21wfy0cxbw2xcswcrqyw"; }; - checkInputs = [ tox pytest flake8 responses ]; + checkInputs = [ pytest pytestrunner responses ]; propagatedBuildInputs = [ requests ]; - checkPhase = '' - pytest - ''; - meta = with stdenv.lib; { description = "Matrix Client-Server SDK"; homepage = https://github.com/matrix-org/matrix-python-sdk; diff --git a/pkgs/development/python-modules/python-prctl/default.nix b/pkgs/development/python-modules/python-prctl/default.nix new file mode 100644 index 000000000000..5d092f5e6eab --- /dev/null +++ b/pkgs/development/python-modules/python-prctl/default.nix @@ -0,0 +1,26 @@ +{ lib +, buildPythonPackage +, fetchPypi +, libcap +}: + +buildPythonPackage rec { + pname = "python-prctl"; + version = "1.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "1njgixnavmwq45r3gpkhn1y760sax204clagg4gzwvvdc5bdbssp"; + }; + + patches = [ ./skip_bad_tests.patch ]; + buildInputs = [ libcap ]; + + meta = { + description = "Python(ic) interface to the linux prctl syscall"; + homepage = https://github.com/seveas/python-prctl; + license = lib.licenses.gpl3; + platforms = lib.platforms.linux; + maintainers = with lib.maintainers; [ catern ]; + }; +} diff --git a/pkgs/development/python-modules/python-prctl/skip_bad_tests.patch b/pkgs/development/python-modules/python-prctl/skip_bad_tests.patch new file mode 100644 index 000000000000..19d70f234a99 --- /dev/null +++ b/pkgs/development/python-modules/python-prctl/skip_bad_tests.patch @@ -0,0 +1,34 @@ +--- ./test_prctl.py 2018-01-26 16:02:52.000000000 -0500 ++++ ./test_prctl.py 2018-06-21 18:26:43.370065009 -0400 +@@ -154,6 +154,7 @@ + prctl.set_keepcaps(False) + self.assertEqual(prctl.get_keepcaps(), False) + ++ @unittest.skip("No access to /proc in the Nix build sandbox") + @require('set_mce_kill') + def test_mce_kill(self): + """Test the MCE_KILL setting""" +@@ -173,6 +174,7 @@ + prctl.set_name(name) + self.assertEqual(prctl.get_name(), name[:15]) + ++ @unittest.skip("The Nix build sandbox has no_new_privs already enabled") + @require('get_no_new_privs') + def test_no_new_privs(self): + """Test the no_new_privs function""" +@@ -189,6 +191,7 @@ + self.assertNotEqual(sp.returncode, 0) + os._exit(0) + ++ @unittest.skip("No access to /proc in the Nix build sandbox") + def test_proctitle(self): + """Test setting the process title, including too long titles""" + title = "This is a test!" +@@ -225,6 +228,7 @@ + os._exit(0) + self.assertRaises(OSError, prctl.set_ptracer, new_pid) + ++ @unittest.skip("The Nix build sandbox has seccomp already enabled") + @require('get_seccomp') + def test_seccomp(self): + """Test manipulation of the seccomp setting""" diff --git a/pkgs/development/python-modules/sounddevice/default.nix b/pkgs/development/python-modules/sounddevice/default.nix index 6d467a57c604..5b8c4a46b2be 100644 --- a/pkgs/development/python-modules/sounddevice/default.nix +++ b/pkgs/development/python-modules/sounddevice/default.nix @@ -4,15 +4,16 @@ , cffi , numpy , portaudio +, substituteAll }: buildPythonPackage rec { pname = "sounddevice"; - version = "0.3.9"; + version = "0.3.11"; src = fetchPypi { inherit pname version; - sha256 = "1c9e833f8c8ccc67c0291c3448b29e9acc548fe56d15ee6f7fdd7037e00319f8"; + sha256 = "0pfcbgbl77nggchxb2i5rb78m7hpgn65aqpz99yfx1fgfbmy9yg1"; }; propagatedBuildInputs = [ cffi numpy portaudio ]; @@ -20,9 +21,12 @@ buildPythonPackage rec { # No tests included nor upstream available. doCheck = false; - prePatch = '' - substituteInPlace src/sounddevice.py --replace "'portaudio'" "'${portaudio}/lib/libportaudio.so.2'" - ''; + patches = [ + (substituteAll { + src = ./fix-portaudio-library-path.patch; + portaudio = "${portaudio}/lib/libportaudio.so.2"; + }) + ]; meta = { description = "Play and Record Sound with Python"; diff --git a/pkgs/development/python-modules/sounddevice/fix-portaudio-library-path.patch b/pkgs/development/python-modules/sounddevice/fix-portaudio-library-path.patch new file mode 100644 index 000000000000..5be786ee0f5c --- /dev/null +++ b/pkgs/development/python-modules/sounddevice/fix-portaudio-library-path.patch @@ -0,0 +1,34 @@ +diff --git a/sounddevice.py b/sounddevice.py +index f03476c..5745b6e 100644 +--- a/sounddevice.py ++++ b/sounddevice.py +@@ -58,28 +58,7 @@ from ctypes.util import find_library as _find_library + from _sounddevice import ffi as _ffi + + +-try: +- for _libname in ( +- 'portaudio', # Default name on POSIX systems +- 'bin\\libportaudio-2.dll', # DLL from conda-forge +- ): +- _libname = _find_library(_libname) +- if _libname is not None: +- break +- else: +- raise OSError('PortAudio library not found') +- _lib = _ffi.dlopen(_libname) +-except OSError: +- if _platform.system() == 'Darwin': +- _libname = 'libportaudio.dylib' +- elif _platform.system() == 'Windows': +- _libname = 'libportaudio' + _platform.architecture()[0] + '.dll' +- else: +- raise +- import _sounddevice_data +- _libname = _os.path.join( +- next(iter(_sounddevice_data.__path__)), 'portaudio-binaries', _libname) +- _lib = _ffi.dlopen(_libname) ++_lib = _ffi.dlopen('@portaudio@') + + _sampleformats = { + 'float32': _lib.paFloat32, diff --git a/pkgs/development/python-modules/vobject/default.nix b/pkgs/development/python-modules/vobject/default.nix index 8d52f65d498e..3c0b8a1f5932 100644 --- a/pkgs/development/python-modules/vobject/default.nix +++ b/pkgs/development/python-modules/vobject/default.nix @@ -1,12 +1,12 @@ { lib, buildPythonPackage, fetchPypi, isPyPy, python, dateutil }: buildPythonPackage rec { - version = "0.9.5"; + version = "0.9.6"; pname = "vobject"; src = fetchPypi { inherit pname version; - sha256 = "0f56cae196303d875682b9648b4bb43ffc769d2f0f800958e0a506af867b1243"; + sha256 = "cd9ede4363f83c06ba8d8f1541c736efa5c46f9a431430002b2f84f4f4e674d8"; }; disabled = isPyPy; diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index c4d6897b9989..54c4968607df 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,10 +4,10 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.6"; }; +let derive2 = derive { biocVersion = "3.8"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; }; - AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.4"; sha256="0wchfmz3fl0vx7mmddh9s6sy04xvjh6nkw61yx1ddcdhzrwa45i7"; depends=[AnnotationHubData ensembldb]; }; + AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.6"; sha256="1sdxj2rxhc2cj2rgfif2flnic57zkdrhdvhr3y64amcmrp57xgj4"; depends=[AnnotationHubData ensembldb]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; BSgenome_Amellifera_UCSC_apiMel2 = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2"; version="1.4.0"; sha256="1967w7aly7qydykk7rar712kvgsav3zjr4kirybkj17nwiynd74g"; depends=[BSgenome]; }; @@ -86,6 +86,7 @@ in with self; { BSgenome_Scerevisiae_UCSC_sacCer1 = derive2 { name="BSgenome.Scerevisiae.UCSC.sacCer1"; version="1.4.0"; sha256="1smx3zdmllrx5f1a7hv1w3jc59jwvkd2n37hz6hgb80da7lajn2b"; depends=[BSgenome]; }; BSgenome_Scerevisiae_UCSC_sacCer2 = derive2 { name="BSgenome.Scerevisiae.UCSC.sacCer2"; version="1.4.0"; sha256="1ilz326qx1ikapmsz00hg5g6i637qm9kwc21z93q890h7sgaz4k0"; depends=[BSgenome]; }; BSgenome_Scerevisiae_UCSC_sacCer3 = derive2 { name="BSgenome.Scerevisiae.UCSC.sacCer3"; version="1.4.0"; sha256="1pnd394xfy413nvxq3hrlv33girj8f9kzdzi9gx232lm12av6hxm"; depends=[BSgenome]; }; + BSgenome_Sscrofa_UCSC_susScr11 = derive2 { name="BSgenome.Sscrofa.UCSC.susScr11"; version="1.4.2"; sha256="0m7c2r74qp3rjnkxxyz18gd8xjk2f3cp1cr07bwd8v60mvgdn8cq"; depends=[BSgenome]; }; BSgenome_Sscrofa_UCSC_susScr3 = derive2 { name="BSgenome.Sscrofa.UCSC.susScr3"; version="1.4.0"; sha256="0l70arnpshiviq3xj61fw87dhf8sggq6k1yryagbhdb40d5cq8lq"; depends=[BSgenome]; }; BSgenome_Sscrofa_UCSC_susScr3_masked = derive2 { name="BSgenome.Sscrofa.UCSC.susScr3.masked"; version="1.3.99"; sha256="0ym82vysn131anp8zmmkgyx6zmyh44am5i1m3j9kj5lvq874ycha"; depends=[BSgenome BSgenome_Sscrofa_UCSC_susScr3]; }; BSgenome_Tgondii_ToxoDB_7_0 = derive2 { name="BSgenome.Tgondii.ToxoDB.7.0"; version="0.99.0"; sha256="1ilpfd66hn0qh1dkj9l8wkddym9d320blwj5hx0x7dq92bnzs98v"; depends=[BSgenome]; }; @@ -111,8 +112,8 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.5.0"; sha256="02d1mn1al3q7qvhx1ylrr3ar4w4iw0qyi5d89v2336rzwk9maq35"; depends=[AnnotationDbi]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.0.0"; sha256="0xp8hyc4r3lz76i0x8r9lp74h2j8p7fcrn7nqmjhx5kn9bdp7fyp"; depends=[]; }; + GO_db = derive2 { name="GO.db"; version="3.6.0"; sha256="0fi2qywr9apg5lwfqfq9qq6bgrnv4rdhxx25656qn4bsy62i838j"; depends=[AnnotationDbi]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.1.0"; sha256="0k1hsjx6n2i1sf14hyrgdhxqxm5mxk0bgnivhiax944whcicmzbf"; depends=[]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -131,99 +132,102 @@ in with self; { IlluminaHumanMethylationEPICanno_ilm10b3_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b3.hg19"; version="0.6.0"; sha256="1rdkvbpbz8a8bd9ipycfmgn8a3x519abhwywka21ii9ziv3s6ah6"; depends=[minfi]; }; IlluminaHumanMethylationEPICanno_ilm10b4_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b4.hg19"; version="0.6.0"; sha256="0687b4k8hwfc18qgdd9ypv1skp37jd204fszba0gmrv3dc92i09c"; depends=[minfi]; }; IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; }; - JASPAR2018 = derive2 { name="JASPAR2018"; version="1.0.0"; sha256="1j82wsayzn6zn7irihpc8jivvwfsdrckik0ypajsv3pgrb5b3naa"; depends=[]; }; + JASPAR2018 = derive2 { name="JASPAR2018"; version="1.1.1"; sha256="1iq5b51ryah2ccdx16yyigfa2jiapcpm94l6vgvd4v7b94jjp8l7"; depends=[]; }; JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; }; LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; }; - MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.6.0"; sha256="19y1w2nk3xj4xkg46vhmfk045j8cg81x9a27irmgl2ym3pmcpn92"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.6.0"; sha256="02bwgqh4mx9yfsyr6cxglncdybkxq9rc0gir3919sjs2my3pa0yq"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.6.0"; sha256="07spwx7akc7i82s8il6mjkmyll07v2slkv6h6fy1rrsa0hrdrw8w"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.6.0"; sha256="1gr9gh355h1n426rwsr44wk4fgy0bvjfyaai2jj0qnp9zb94kr42"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.6.0"; sha256="1a2x86cdl6q3s9phb6dzblld4y43r10gh7323c5jnwiyirhs4hlc"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.6.0"; sha256="1zyp1hsqdcspnvlnqm3wp9xly8r6kjbglbdqsc8fxllivdzxs15f"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.6.0"; sha256="02hq5agpbqcc5cva6xa37kniwi0fi7h5d4cbpmlwfc502n0ahlx0"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomAD_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.0.1.hs37d5"; version="3.6.0"; sha256="0fjpm1lf8qz5vfd4k2sd50a0nkxx8jlf31c1xp87a2d5v7gyx9d4"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.6.0"; sha256="1jrzj9mw8xqxmw4qq9djs1f5slvd5l7151pcg9bqzj0162zcz8jb"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.9.0"; sha256="0vlvfwr9bi229xwdjymclj0z2spxx8q96hpkgvqyndfpqchapl5q"; depends=[MeSHDbi]; }; - MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.9.0"; sha256="1cx2yzx67fgqi0kmf1mk3ykvmqmprilxrjg6l51srjhi40p9q1wg"; depends=[MeSHDbi]; }; - MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.9.0"; sha256="1gy4l1p0980blf91f57sxnn38gfyq99lmy3sfc141nm435abdh2l"; depends=[MeSHDbi]; }; - MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.9.0"; sha256="1z2y8mdjyjclf0lqlhi9dq9gq8cqrm8m2m0rnyqgbadsxviwg447"; depends=[MeSHDbi]; }; - MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.9.0"; sha256="15393b8pyh8xclbi43q3iv6lvza7az7zyc2zcmj2wnqx8x9nn50p"; depends=[MeSHDbi]; }; - MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.9.0"; sha256="0r1q383f5p92f238m7w0gxalfr8w638ij4dj8zm1b20qakwb8bk6"; depends=[MeSHDbi]; }; - MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.9.0"; sha256="1fv6hfqx562qiy87h7bjym72ffygfgdfx0miwbnwd1wblbrs4m23"; depends=[MeSHDbi]; }; - MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.9.0"; sha256="0m78hqfcpnfbq7dm28l24ckhz91sbq3mgi0qdkn6l69rg19l5xwr"; depends=[MeSHDbi]; }; - MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.9.0"; sha256="1s180b36nz4g7w2c49c4dddz4362ps45fjbs8q07s8d5r826wil0"; depends=[MeSHDbi]; }; - MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.9.0"; sha256="0s0bskw9y5gbf80xf7sh43csa8mwi0h4ka2dai6jm763jdal645s"; depends=[MeSHDbi]; }; - MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.9.0"; sha256="1nfy0fa7jnlsq823jq1im6zimnanqx6hc4z9sa2mhpn8yw3hrzcy"; depends=[MeSHDbi]; }; - MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.9.0"; sha256="111q80xyfnz9p8230wnm0xkam2p25drbcb2nyr68lpz3l02m9c72"; depends=[MeSHDbi]; }; - MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.9.0"; sha256="0xpm52xshhjw0lazfz9zhk3wiqas88aabin58iqykbyivnaxgiw8"; depends=[MeSHDbi]; }; - MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.9.0"; sha256="1ni1w608mr28fapxhxj5icf1yjq6wrnqfhxc8bf5q5qqpnb34k16"; depends=[MeSHDbi]; }; - MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.9.0"; sha256="0c1rxpsavj4j9sndr2bigyxsdg7hm3ckbk2rai2gz125vwlfy9ll"; depends=[MeSHDbi]; }; - MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.9.0"; sha256="10zxx8hpd72dad1ais9qr1ahkrqygmrzj2zph8n7zwvcys3mqqqg"; depends=[MeSHDbi]; }; - MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.9.0"; sha256="0g8dafmjls4lafbg3a484iym0df173szvnzfqz272sh32a69ikgb"; depends=[MeSHDbi]; }; - MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.9.0"; sha256="0r4yrxflppzf21zfiyq1hxsjjgm7a3akj18qly8576nl94py0h16"; depends=[MeSHDbi]; }; - MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.9.0"; sha256="1aicx7f7mpawq9mbrdkpach2n8yz2isqfqxcqx355js8csdnai6y"; depends=[MeSHDbi]; }; - MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.9.0"; sha256="1d829frcmx9h0yn4dk2ddhqjjf4kz6n0c8nag31n5viaj0jrxhz9"; depends=[MeSHDbi]; }; - MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.9.0"; sha256="0zx7s0xbqxl2xs1xhv5q3ppr33zfyjs4c5cmfp904k21fp1gyxk0"; depends=[MeSHDbi]; }; - MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.9.0"; sha256="1sahvwvh29m2icqi3l4ain817cmlajklmc6w32ay5ydbxdl2k2aq"; depends=[MeSHDbi]; }; - MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.9.0"; sha256="0g8z6cdz5wad9fhzd0f7p7961kjv1icfwxfskgimrb0dqn0vwngz"; depends=[MeSHDbi]; }; - MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.9.0"; sha256="1g68dv597h62kidkaxmyj67jpz49aklr77hf0zy0n556whb0gjw0"; depends=[MeSHDbi]; }; - MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.9.0"; sha256="18r1mfmszsypp6iwdfcdlxzbz2ym53q160y5740d20nf18jwdkyl"; depends=[MeSHDbi]; }; - MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.9.0"; sha256="09r83x7c3ascv5k10izbsybbchng578f88cqcc34a71h01ccvbgl"; depends=[MeSHDbi]; }; - MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.9.0"; sha256="0c6yi84drl1kp270ifhkha6s5555pmx122r3zsh5lqip4pf36ik0"; depends=[MeSHDbi]; }; - MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.9.0"; sha256="0za05dgsy67sl1rg827mn4iir2fcwqgnmmifppdkmg5bcqvh3sli"; depends=[MeSHDbi]; }; - MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.9.0"; sha256="1m8vszsdql5vnbavrdazrf0d88nq8c08bz9fggr1799fmh9ivppi"; depends=[MeSHDbi]; }; - MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.9.0"; sha256="1sjm22yl4a9lwv6j5hhs16zs39fv9xvaga2bgb55rv6i1zbw514v"; depends=[MeSHDbi]; }; - MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.9.0"; sha256="0lll6xsxccxg04nnbchkq3rskzqj70czky27yhn99dpnb7cl2gpk"; depends=[MeSHDbi]; }; - MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.9.0"; sha256="0fny3nxwpihh505h54b82bf22p74xhf89xns9n7wgsg6j7zr1q49"; depends=[MeSHDbi]; }; - MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.9.0"; sha256="0jklkvqwajnprs951ws5fxjxkx1dqmi7nldb854wciyanya7srbz"; depends=[MeSHDbi]; }; - MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.9.0"; sha256="0gmjpbqcrg700fi4qgg9cxny8rwclpg9sbrg2yqpnpiwfp3m1xp9"; depends=[MeSHDbi]; }; - MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.9.0"; sha256="126xn0dgw08xdjw0sqm80v3pwqlmjzarifq1s3s81qkd814pij2y"; depends=[MeSHDbi]; }; - MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.9.0"; sha256="1zfq3h886x9kyislnl4mj6ksfmr4slmayw2f63wp3vhlqc8xlp6m"; depends=[MeSHDbi]; }; - MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.9.0"; sha256="18n2aajv2m1s3y13w88jnxiwzmmqiplmp2la1fh6f34ywsc8vcf2"; depends=[MeSHDbi]; }; - MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.9.0"; sha256="1qhw2zbldsxr9mii73n5l2l3xgnnmfcdm5zlnj8q6maz0rg8npvc"; depends=[MeSHDbi]; }; - MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.9.0"; sha256="0siyszvzgy61f44mk6hgg215jin92i1bpyld932f3ydkb2cg1vii"; depends=[MeSHDbi]; }; - MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.9.0"; sha256="1r5ighzpbw3rbi9pv75xgdxz34yl7d4nimc3423fva6m25bl14f1"; depends=[MeSHDbi]; }; - MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.9.0"; sha256="0m3f9vkl97drciv68qvb6b1zxg4376sgrxd5fn7r8v6jnk3764h6"; depends=[MeSHDbi]; }; - MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.9.0"; sha256="0kbf04jgy9sdq99x7c3j6fk1d1p746sm5h0wgcc496hmj9f3d7xq"; depends=[MeSHDbi]; }; - MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.9.0"; sha256="1s96nh30gg3q6agvd75h8wkmsna753wlhh79fb563plkhynila3j"; depends=[MeSHDbi]; }; - MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.9.0"; sha256="0f49mvvrigq06m6wsf2bn5b2k06c5azfnzks8z8h91h7p1cdn239"; depends=[MeSHDbi]; }; - MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.9.0"; sha256="1nlqqgwcaic49lr7qknm4fnr28iy5a5g8pln9ay5c94d82ihaanj"; depends=[MeSHDbi]; }; - MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.9.0"; sha256="0s8hfixk8axy155rhv9frnvdannm7fwv8xbnn4yqrqz97s0w3l8x"; depends=[MeSHDbi]; }; - MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.9.0"; sha256="0kc1zv1rlw6sg72z5if2ljyyb99nn9jj67z0x77zpjil15igjq0f"; depends=[MeSHDbi]; }; - MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.9.0"; sha256="07n81wg4g7r554xs4ziv637mz22ycmn5h03v2a1bl4gfagmp2wga"; depends=[MeSHDbi]; }; - MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.9.0"; sha256="1sss6f5c039vic2kbxf5zchxx6qqdpysbwfb04xqn7vb0h5xs9aa"; depends=[MeSHDbi]; }; - MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.9.0"; sha256="1lmy5rqpsxrmcc1zshj2dygdyrw5i95bmp9d31686h2pf7rxjxa7"; depends=[MeSHDbi]; }; - MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.9.0"; sha256="1j892b88xpf1lcz6lv7n0b2lmqda3j6na6lm18qrmnydvihsrglz"; depends=[MeSHDbi]; }; - MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.9.0"; sha256="0mnyhj6cfzgar0rsfzza9vydh3kiimyix732zm80gsj7xq844hs4"; depends=[MeSHDbi]; }; - MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.9.0"; sha256="1gmlg22jdspcv6056iax16hk6vry739s7px1c0vpgmsblj8blzjv"; depends=[MeSHDbi]; }; - MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.9.0"; sha256="05qsamqm7dimvghka10z03shchx08gxaf7bv488djia9msw04l3w"; depends=[MeSHDbi]; }; - MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.9.0"; sha256="0h0027wgxm5ngk7087hcw1n2xx04q0sgfcpgmv2wn3f88mh42r9l"; depends=[MeSHDbi]; }; - MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.9.0"; sha256="1cgbalyamgf1aj48ndhby8x3mzdwn8aiv9nrh8mpyz9zssl0ywdm"; depends=[MeSHDbi]; }; - MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.9.0"; sha256="0wwnjqc0rvymh9fzh8l9hnlmaymchp54v9fqavxl3cwr2jjyyxis"; depends=[MeSHDbi]; }; - MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.9.0"; sha256="0s869r4pz02d9k4dcg7qxy75h44x6lli8hxm3f9fjmmvv6cv18zs"; depends=[MeSHDbi]; }; - MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.9.0"; sha256="07krh3k6d1q9dadphs07sapyv3dfmlhdmgcfrrramixx7paqqd1a"; depends=[MeSHDbi]; }; - MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.9.0"; sha256="03bs083cvgd5gwy0n2hqq08r8fzw426a4fjx7yg9ypp6316bp03b"; depends=[MeSHDbi]; }; - MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.9.0"; sha256="0snydy5c7y0437qndc7ki3nswbr3jfj2fssdiqa3yfrbd4dgl8fs"; depends=[MeSHDbi]; }; - MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.9.0"; sha256="1g6q20hk4v2kwjj9shrwyrf068qv8zrz4dlv58id1im0h6kzi1bq"; depends=[MeSHDbi]; }; - MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.9.0"; sha256="0wdwy7jqy47flyk25fv51l2acg7lisf240sli9snf0hl4rg2m8sh"; depends=[MeSHDbi]; }; - MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.9.0"; sha256="193amf74qwglzdpgc4b9f2g0jxs2s5ilfwzk5gpzzsyr6z19m8sx"; depends=[MeSHDbi]; }; - MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.9.0"; sha256="1wpl49hsz2la272mp836cgqnncyddknrfbfalikwrbydcpdflmqj"; depends=[MeSHDbi]; }; - MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.9.0"; sha256="0x1s4qs17sy7pz1bhlgfzgvixf50h4wcpa885600f5jv80piz10w"; depends=[MeSHDbi]; }; - MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.9.0"; sha256="0959hmphr884az46y6zvsmi28vsz66y3jf09f2hki6cwg7gp28l2"; depends=[MeSHDbi]; }; - MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.9.0"; sha256="1fdwj5dpfpm8cbq5i1wk3n5qq0ygw876shpxiqlj7i7a8yrnikqg"; depends=[MeSHDbi]; }; - MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.9.0"; sha256="1mrmxpi4zkj77qnr5gsx7nnmhz3h7w07mji0khahd1cnkdqb455g"; depends=[MeSHDbi]; }; - MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.9.0"; sha256="04wrimmnwhzqhk88jp059h5wpj0wh35ilgzfmn7m66igbiywsyiq"; depends=[MeSHDbi]; }; - MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.9.0"; sha256="1wida7bmggiamd8bw7sx3sc84rjhpa6c7kgbz7ppf5z5zzabxwj8"; depends=[MeSHDbi]; }; - MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.9.0"; sha256="0s7792dcgh5ilanr4nnkfcf95j4yndsncr63ybw8g5kp14qw3b6i"; depends=[MeSHDbi]; }; - MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.9.0"; sha256="19g80bjw7h0f4w3mlrj56xmsdf46bjvs2bykf7hbz911qblkmd08"; depends=[MeSHDbi]; }; - MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.9.0"; sha256="0x5amvf092r97zkzivsks99q4iaw9cnwpk2mjq8qjfrj2fg9mghc"; depends=[MeSHDbi]; }; - MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.9.0"; sha256="0h2kndx4xva57hhapzkwnk4by05vpcrgqakc5cpil11in9wwm4gw"; depends=[MeSHDbi]; }; - MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.9.0"; sha256="11gssp2rm9jln3bhallxhscn1vlp62yv1dqsshswzhda230pwsk8"; depends=[MeSHDbi]; }; - MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.9.0"; sha256="1pn4v8hp2g9i6d0wn7yj28fg6nfrlxi2zw7svmqlqf0n15sj4g91"; depends=[MeSHDbi]; }; - MeSH_db = derive2 { name="MeSH.db"; version="1.9.0"; sha256="1vljxgv6x7417sash10mjmwdqs6xmqhwxdsf5n8nn3bw283k0jkv"; depends=[MeSHDbi]; }; + MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.7.0"; sha256="160whyhwjspqji6ys19qgi4y3k7z1qqzr75nhpw0yl8h1rc6rfg0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.7.1"; sha256="1yxhb3kysgj95wdp7v5kq3bvn9xj09ywkfm2fdrkqxmzpan7q9q5"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_1Kgenomes_phase3_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase3.GRCh38"; version="3.7.0"; sha256="0z0v2kld7xqk2plrwb594q3al2kxi64k5phyknnpb0hhgddl688z"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.7.0"; sha256="0rg4vzk3ik2ikdr57fp1za37kfpci6ha0qn8wpnyf8qyc3h9q5xf"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.7.0"; sha256="1iybhk64lqar1b8qv1rjxzf53mci9bq684m4l7zqrz8g91jx7myq"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.7.0"; sha256="1nfcnlwcx1sr2z4icg893zv3j9c9gnhd0nbgnjrl1fh2nrl25wsd"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.GRCh38"; version="3.7.0"; sha256="1xs52xivxjzg14d0fr3ifb29shysxvw062c3wzb1nfmnydixcqmf"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.7.0"; sha256="00b022hzwr0l6m9wzw76iirdq5szvi5z8a9yi2i44sydhwqsb4cy"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_nonTCGA_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.GRCh38"; version="3.7.0"; sha256="1dvzzwj9dhrls8caabdcgddsk64a6q9jqcya424h8n48fkx6fpjn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.7.0"; sha256="10rn7nqrnhmhdqcygi8l3cwf1385jyy56qzqjgqyhvmi4g8dnjsn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.7.1"; sha256="1kxk3qqw1igkygqmj8yjl4cp99fan1w84gilh6q35nsaja0fapa8"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomADex_r2_0_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.0.1.GRCh38"; version="3.7.0"; sha256="0hwyyqa4g3hp85hk4b6qfzm10yk6h20sh0f2mf09yr0hpmkjyl59"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.7.0"; sha256="1y1kzbs37h804c81rll64kz83rpzmzl1z410frabyyblpxm275j5"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.10.0"; sha256="0dc2j64v93j7gj28yl9lpbxdqlqszr8sn3p7jbkcwixgpczhqzbj"; depends=[MeSHDbi]; }; + MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.10.0"; sha256="1p0495kyg2vcbf98scfxb1iidn4xvv1r1jwxx40g1fjwl1s0rm4k"; depends=[MeSHDbi]; }; + MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.10.0"; sha256="0ipnzigw2791fgzr6s2a8m4idpicwlk46pplq9q3ql9ss0nw4swi"; depends=[MeSHDbi]; }; + MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.10.0"; sha256="1kpr0li13kwn2ynnghaj775ln7zxim8jdasbrmnyrq8b61v1784s"; depends=[MeSHDbi]; }; + MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.10.0"; sha256="0aa6qgk9vwdkwykkml10j0vcjp53ypa2p3p8za9qgfk0r19831wi"; depends=[MeSHDbi]; }; + MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.10.0"; sha256="1v81wccvd2kgx05h2lffbdjkl8xsdb0f5h2i12csfnlhfgvgasdf"; depends=[MeSHDbi]; }; + MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.10.0"; sha256="0caii8lq500rc5kaqq354zldrb2b0zapypqzr6kfh4swa6fa90x5"; depends=[MeSHDbi]; }; + MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.10.0"; sha256="1x33f3g8951kawq3j1p1aic9jlx10dbf8qb1g0yrcrq1nvxnywlq"; depends=[MeSHDbi]; }; + MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.10.0"; sha256="1inpqz39ingljyjsp9v7mfvx8jcmmmkc3p3k4ffcw9xfd17iiw9s"; depends=[MeSHDbi]; }; + MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.10.0"; sha256="1bwmy42s7rvnng5p1lqcbjhxvw42pr9gbyp7r1951n69f1311n45"; depends=[MeSHDbi]; }; + MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.10.0"; sha256="1fw30l682sfcpdqqg8r5vyk0slxx00k1agxgli1syhvhh1hrbnxx"; depends=[MeSHDbi]; }; + MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.10.0"; sha256="0xgzsvqr62g8gipz1i73mxrbg8784axc6hj82v034i03zh0kz2rp"; depends=[MeSHDbi]; }; + MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.10.0"; sha256="136cg8nmwhc6iplzj2wxmgy4nggi3532xv3kff0hx85g5nbj6k6g"; depends=[MeSHDbi]; }; + MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.10.0"; sha256="05wj3ib1xjiy2asz41h32r29371qyd8dc3xrx78wwfj2a7760b4y"; depends=[MeSHDbi]; }; + MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.10.0"; sha256="1b8jc8gc62knhkl0g6isx6d0kb2b33mydb0wpp3v0xlmzpv3f4qn"; depends=[MeSHDbi]; }; + MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.10.0"; sha256="0qiwjxrjz7np4ml2hxdqfqmjaql5hgnzv2919rcxfikp5cxq7b51"; depends=[MeSHDbi]; }; + MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.10.0"; sha256="06vk6imry285qcmgcrjqlxj0ihxqasg94ap18xcxiwwps1dbha89"; depends=[MeSHDbi]; }; + MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.10.0"; sha256="1xv54fhn44l3kjgbmrga3lfqjjf3zgwprm0j518qlvycxvr41znr"; depends=[MeSHDbi]; }; + MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.10.0"; sha256="0582xmkwmpr3hjsh9qzv6q60bypdmrk34rcp0jzzqjnfrn9mxasb"; depends=[MeSHDbi]; }; + MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.10.0"; sha256="1cjzilbbw6r5sayy8bifx9rrbj3y95yzm8vdpxg5y1kvsa8047y1"; depends=[MeSHDbi]; }; + MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.10.0"; sha256="099s4v5rr0jpzh8x60cjb7rxz8c4f8m2s3r09cgzi1fxpmmlzspm"; depends=[MeSHDbi]; }; + MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.10.0"; sha256="0apr6i080wkhb5s5h6v64b40wdx6fygn422vllwicjkqxllbaa4x"; depends=[MeSHDbi]; }; + MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.10.0"; sha256="1ln50lqba33vsvbk6wydgm2akpnvv92305zxcpbl6d2px0xbjldz"; depends=[MeSHDbi]; }; + MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.10.0"; sha256="0nwag2828j1hqx6biihnpprzbrimc7as3nn3p4kkhs067bz457ny"; depends=[MeSHDbi]; }; + MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.10.0"; sha256="1bcqyrcff510l5my5wha0yrl76wznm7xljlbv24q1i2mjb00x087"; depends=[MeSHDbi]; }; + MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.10.0"; sha256="1zsq4fkr2bqcfdf1v5w3gn5x29f1q9y4b4qx7nhiipfwiybnjdpd"; depends=[MeSHDbi]; }; + MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.10.0"; sha256="1xr4h3d3fs20cfwzaj1jjipfnbbvgmx7rlmxfvv8q8hxpfzp7vsp"; depends=[MeSHDbi]; }; + MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.10.0"; sha256="1hjywgbgbpgsk8hhwlfz9phx3hwi14j9yxa8zmbas3w9cf9hg35a"; depends=[MeSHDbi]; }; + MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.10.0"; sha256="05mhyfjj2m1mx575nyc53lrwhj0lip4bcv5xa37swz7n1x821bnq"; depends=[MeSHDbi]; }; + MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.10.0"; sha256="03vrcnfcpj1ayrfawwqgvdvb7mymkwng36pr8p491l8vmk4yhsgs"; depends=[MeSHDbi]; }; + MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.10.0"; sha256="113zcn037fx15g5xipz9bczw0b913yd8sp4l3yg8zffai8qmhwcj"; depends=[MeSHDbi]; }; + MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.10.0"; sha256="00i6r7fhqrnbyxmkcpvsyhm1wzmskmrqnfsvd7ls0xcw3h6lpp7v"; depends=[MeSHDbi]; }; + MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.10.0"; sha256="1azyzg3ak01mbgdw8l7csgiwpzd5fwk6h3x8n261xxm1yd5f1g9l"; depends=[MeSHDbi]; }; + MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.10.0"; sha256="0j7rga9n6gl6k1gh5ppz742gy4swriwwnfavrjam6k6inl40as57"; depends=[MeSHDbi]; }; + MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.10.0"; sha256="0cibmy5hyg7aw960cb9zbqdaabbh9f5mwlxdv9gynghkxrqppcaq"; depends=[MeSHDbi]; }; + MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.10.0"; sha256="1yw0kamb6j25cv3fz7649n43slaxah0f6yzwhglsa4fjffam1ycm"; depends=[MeSHDbi]; }; + MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.10.0"; sha256="129yw8yrm89rv999va8pn7513c0dl1r1xffsdc01i4wadhq3rrx0"; depends=[MeSHDbi]; }; + MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.10.0"; sha256="17faizllk30rcw66arfr2nkcx4a70vkjzsca1zf7wpl9myad1r3q"; depends=[MeSHDbi]; }; + MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.10.0"; sha256="1hqm92vmrg5s07dkr1xa7a2jwspx90v969piba3cf6gdmjw81p5j"; depends=[MeSHDbi]; }; + MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.10.0"; sha256="06cvyg8ib4dkcn92br7wkx9bj36dji9lsn53aliyj6h5sq6ssvfn"; depends=[MeSHDbi]; }; + MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.10.0"; sha256="11q2gv8c5cv7ll22f6w34pqr7r8jzgkx1bhwl4fj49s8n7rfh0cg"; depends=[MeSHDbi]; }; + MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.10.0"; sha256="1gw20014wcf67n574p6r7cwcchyk3c915bbkqcwkj25bvvk4cmga"; depends=[MeSHDbi]; }; + MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.10.0"; sha256="1hh81rhr3iq8a98w7lvbz6cwjq0hfcxrazv7sdy0pjggd12l991r"; depends=[MeSHDbi]; }; + MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.10.0"; sha256="0p6zhf5fjh5bn1ibmmmjmnpfp2vplx84fa1zbs7djg96vpvz8flp"; depends=[MeSHDbi]; }; + MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.10.0"; sha256="1f497wkvbgw11887gsbcygi38xj2fb4vxg34k3jf668yq1x25jcm"; depends=[MeSHDbi]; }; + MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.10.0"; sha256="1mfg8vbqgqbb573ddv7pp3k2nl4gq27jc472rp4y3x4g8b2ci5hv"; depends=[MeSHDbi]; }; + MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.10.0"; sha256="1l27hl4cl1h02k9al51485f61qlwwqmsgyp46dcvvdg1l8hlckmq"; depends=[MeSHDbi]; }; + MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.10.0"; sha256="0vvkgbvg6kzl4w8jbvlvaawkxc2j3x1pipqf6q4niy0yk951r30r"; depends=[MeSHDbi]; }; + MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.10.0"; sha256="02mp7q0g7by8ihjpjwc39d6kwnwpxkn6xhx9v6fzdfy4q558qpnk"; depends=[MeSHDbi]; }; + MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.10.0"; sha256="1248y32km28aaj92caar8c97bmkml7853l8xp643vxawgwlmc7a6"; depends=[MeSHDbi]; }; + MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.10.0"; sha256="09576k1m19mjsdm17iw78djn9pb21g5i237rqrdk709rifar6nny"; depends=[MeSHDbi]; }; + MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.10.0"; sha256="0azrd1jmyyk6n9whgc3jdaqmalqal3vw6sx5cr84m9cbv9b9c9s1"; depends=[MeSHDbi]; }; + MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.10.0"; sha256="0cgq3caxikrv22y19fg4gpphz4cf3xb2w0s0rsnmwb1bkj57y2x2"; depends=[MeSHDbi]; }; + MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.10.0"; sha256="1w118c82694wplqr5q7wvzgcdhf9cm2cbyhajlvh9iad089m4cam"; depends=[MeSHDbi]; }; + MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.10.0"; sha256="0ka2fsmznlaxn24sqg5fvfy7y9plwqywr75hxfxls3dcykhvsn4r"; depends=[MeSHDbi]; }; + MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.10.0"; sha256="0cqwnjz77r5faf0gi39hg802hxwswzab56m8l55w9paxq4p5n1jx"; depends=[MeSHDbi]; }; + MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.10.0"; sha256="0gjnbah7ik8sarx05y6hzl94s669j4c8gxi5n6fa6pb9b4kilqfw"; depends=[MeSHDbi]; }; + MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.10.0"; sha256="11gfdh385vcyzwwszj8fjfbw06ksra677fhmj99f4nrbnvbdjlc8"; depends=[MeSHDbi]; }; + MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.10.0"; sha256="0yb0qg11fwpk47kb06w4ck518jff9x2j4kkfi254lbn7asawlgv3"; depends=[MeSHDbi]; }; + MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.10.0"; sha256="0fzcg6m73qa1fzzbq0kqir69axxcgilr0r3kgajrh8hfdrqvxhx2"; depends=[MeSHDbi]; }; + MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.10.0"; sha256="0kmsmdpvjnfa2wqdpka70wl5cbpf7bc0bvnf2lj559sdg18glr0d"; depends=[MeSHDbi]; }; + MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.10.0"; sha256="106wa8vv3v13yn3c3dfbqsp5gm8g2bh1r5yc6kynp3pyxxwnmmpi"; depends=[MeSHDbi]; }; + MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.10.0"; sha256="000p0jvdwxjkkzh94llzxbhdp5q76d3n8wbgk7iblxwm7aq48q4l"; depends=[MeSHDbi]; }; + MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.10.0"; sha256="04mn9gihl6zdv7d05f7q2jvr9xh6f2276p38rxq13xyh1y797lsf"; depends=[MeSHDbi]; }; + MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.10.0"; sha256="1h8x4jwcn0dra927nb5s0dq2w4rv8vdmf82vd17xpj46f051k10m"; depends=[MeSHDbi]; }; + MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.10.0"; sha256="09s2q794zylkv7ac73dja8cm3i33dv334dzyppw4d3hjdc7fbb8h"; depends=[MeSHDbi]; }; + MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.10.0"; sha256="1dbhnyppwq1hhs71a123c0l3zlvmgzys71wlihvfp9cbz65cav6p"; depends=[MeSHDbi]; }; + MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.10.0"; sha256="0m3pa3nap2z0sdw0fcx74jly8rkpvrqjzjhjqbck86zirzw48r82"; depends=[MeSHDbi]; }; + MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.10.0"; sha256="000d65ba942dqk73jbp7hf8jkq5jhvy5b3xqqbmqjp0a3m1pm6ln"; depends=[MeSHDbi]; }; + MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.10.0"; sha256="16294ss0i9vpsxapn0m6awf7bl8nglh6ir2i0z47985vaclzx86x"; depends=[MeSHDbi]; }; + MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.10.0"; sha256="050lv051549bcx1n7hlbgh76wxwmz9yrdn0582ixmc240jvgg8xs"; depends=[MeSHDbi]; }; + MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.10.0"; sha256="1nhnqljin6ia8ra6ma3hkabsnm7vqad411a6bb16yfn9c384c0x9"; depends=[MeSHDbi]; }; + MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.10.0"; sha256="0zg433hj5f0l7lls4172lv3f3vnr90gc5fxiifpviam2ibv1r114"; depends=[MeSHDbi]; }; + MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.10.0"; sha256="08yzw25ahckffy6sqwp0qbsp79jr00dk2qgs0g7k3yv7j86yfla9"; depends=[MeSHDbi]; }; + MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.10.0"; sha256="0bkd4skxdv3ffhq21j74ghg1ksgd0666rbj89d3c01dyn0dhb1lv"; depends=[MeSHDbi]; }; + MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.10.0"; sha256="0zhkq8skl4ahbqims1s72m5mf59lvjvzz1x6fg9kwbskfv4y3i93"; depends=[MeSHDbi]; }; + MeSH_db = derive2 { name="MeSH.db"; version="1.10.0"; sha256="1vh7r2din6746z2v4z42inhyyhywi9lahwszm6z42rirzxhcg3xz"; depends=[MeSHDbi]; }; MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -232,7 +236,7 @@ in with self; { Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.4"; sha256="1vl8anixkhcb9axlszk479yaw48bz1hhgmff41nqk8k8w4jkyn1y"; depends=[AnnotationDbi RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.5.0"; sha256="14c85j6ms6cqfifpsihn6ajk6b317gw2b904skv4dqclbgcg6ymx"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.6.0"; sha256="1zlrwps1kwl2h0cmvh0qqmn93n2md6yrkm47nz2vy080dry0q0ix"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -256,33 +260,35 @@ in with self; { TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.2"; sha256="1p7yhxdlmr4fbp4mxakdwp2xf609ws6pyrjl8xq3ilzhf6fyypim"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.2"; sha256="0g4l5r6mqvjsvq3q6kzlvi0w75hm2bxdq0p0pbdpdm8lf9d5aca3"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.3"; sha256="1i4r6gmw2kv67hiwc5k2f0jzh87nx2l8q8ksxqy9hdn1q5wpsrxl"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.3"; sha256="1q68ds8j7m4a1sagn1ypc6p7qqdkdvmhjg7z57ksdl3w4rhkk1w9"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.2"; sha256="19vr9wi2hspsij7gwq7wnlg94zlcqvn639z3jr8s3yngr89d9mnj"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.3"; sha256="1yh4cp509rfw5xj0la49gyxy26l8fasap7dhianhhfnsdqkayzrs"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.1"; sha256="0sdw0gbk84lfjmiyy2x4q01zh1vbjq3vfziwxkb4h0v6nab63k01"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.2"; sha256="1cqc7vlv2jrznh9s0yb70nwy0a2pa7iswr4m253zx6p197igf33l"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.2"; sha256="0d7wqrg69kj65rga9m473ji1s9251gvz6l071ibqmga31imrgb9l"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.2"; sha256="1j68yqfbnas21za7y63p1kpi85jbxb7l3m6i50ig9mp6mmvy7i26"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.3"; sha256="03awii2bq91glqwklr0m48p6qlxq4rij39ncq2f6sbzw5iqqjjbr"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.3"; sha256="1a17401a8lfkv7acxxsh02yrmrmw7mj3207jgrcxjmbd6sicymy8"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.3"; sha256="124hdrj3n77pw7jkxfga8b4flp5xlzynn50fpfjh163jkdb6r9ij"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.4.0"; sha256="0i0xw0mcn403r911ijqdnrwg9k5bspdnjibfjvnhxq4h8vcfprn5"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.2"; sha256="1k2kaik3zvnx3giia1dps06073xkbvd4dva6npskkvzhvqpfxq41"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.2"; sha256="1wma6pm5v9qv29h76p7aj7kwq0l857as0wgya3ryj3mynhsf9j9j"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.3"; sha256="0g14rkxk44bzrhgl5xyfdb8lpq7m5iv95yk92inljz02qxinp9j4"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.3"; sha256="16cmwrij91hj10q3alcxpv0qrfah25z5x23m7lmzrgchsjd84rmw"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.0"; sha256="08gava9wsvpcqz51k2sni3pj03n5155v32d9riqbf305nbirqbkb"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.2"; sha256="0gqrv5n1c63p5cdl1c0l866x9qgfqf6w23p6m12zaxn8riacdnyi"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.3"; sha256="0yi7lxvf6aq634nhdpyg0hxj8hab93fs9z8iw6janasb2b5any14"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.4.3"; sha256="1ra1kjmqza1y6i018j8q46s4qa5hxnk1w2a0szip9sckxbj8xlab"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.2"; sha256="11yxvr20dmjjxw4pyxfnxy8znlxr48xqq9hb6k95y9dyqnir0vik"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.1"; sha256="08w4279c5aq5pazbbdji344lxz113n763q8j2mlagcwfs9r5k9sk"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.3"; sha256="0jpkg9s3ghb61xn3i8x50h7wa0x2ixhzj09n6qk1y661ary5kac2"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.3"; sha256="15h2fgxjn92xfyj5yvm460ap7j6ayhkm6i5fgvqyhvgyarmss9a3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.0"; sha256="0jpvb3phw0967my7afk8scsjzpq1x0i2za534ndizzql3cp45yh7"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.4.3"; sha256="1lwr8yza22q2wqxdbcg37rn3aml5m96hp2m6rkxvs3g08q7wngis"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.3"; sha256="0agd0vn7fb658srqkr3gzk2y8x86xrcsn4hxbyfp2jhiypx60zzx"; depends=[AnnotationDbi GenomicFeatures]; }; XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; @@ -290,23 +296,24 @@ in with self; { ag_db = derive2 { name="ag.db"; version="3.2.3"; sha256="1h0nb5z742pbh7hc8bwqkk9vh16kac8m3h3bh4v5flqfqw6rn8d0"; depends=[AnnotationDbi org_At_tair_db]; }; agcdf = derive2 { name="agcdf"; version="2.18.0"; sha256="07hq41dwqs7yy2sck8p7zl3v9x4bgl35kkycpazz5ql2g5zy6b7j"; depends=[AnnotationDbi]; }; agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; - alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.0"; sha256="1bcqn20a963l49ah3j59nmd5qd15qad56p7k3880q4cp7qza2xsw"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.5.0"; sha256="0ycprvhry525p4hmxng2swcf92m9fsyqcj8na13q9i5p6s1sl5b2"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.5.0"; sha256="0xpa7d15av8pa2l5ksx8mcabhyfdxyk1hw2sd1gdyhyfcn7mjxky"; depends=[AnnotationDbi]; }; + alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.1"; sha256="1v714abdpzhwa450zr66s1yjpxl6lkwi3wjbwn8phn87cgf8rj7q"; depends=[AnnotationHub]; }; + alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.0.1"; sha256="0im87mrh1n6kv84q6lm4y15lb93rih88zdpa0jms5az91lyvsf25"; depends=[AnnotationHub]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.6.0"; sha256="04dgk9q3hsrh4fncf9w4hx8l7qjwcbhbh1cnnfny5y7cpfliib6m"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.6.0"; sha256="10xvx3vfj10xcx4w6jvm2c09p6diqjwaspgvwl5lvcm1xxaghsmf"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.5.0"; sha256="0h02wrj18c24rgkbdnva5qc3znn30i5357c9rzww7y4brhhww8ma"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.6.0"; sha256="0183qqj03r2wd6s527403zyd9r0jd0yapffp9881xsd3pcn2n310"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.5.0"; sha256="1a7qn0jg1yw8222k72058ymbws14fs0y6m4girxzs3v8xbyxji7v"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.6.0"; sha256="1cn3s23h8g3a0h0i97v33qh6yz94bw9i8kzd6xwvgwkj0yinw1ib"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -316,10 +323,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.5.0"; sha256="134ch8bgzjdra9pycs49lmak380qgx71dbmr1s276pyf3h67fzxp"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.6.0"; sha256="1rkqdlnimxnvb8lwlw11w6iwsn42g11nbihj0v78rx9m0n7s6ik1"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.5.0"; sha256="12smymvq4l7aw454lah9gd0rywgi3bcbd3vf8h6a93y2mnhdxz9q"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.6.0"; sha256="121hzz3s816xhbv6rh87i9qas02j2k89cb6my22n9jhyf74r7nfi"; depends=[AnnotationDbi]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.7.0"; sha256="039bsywnim0nr8b3w6vkj4m20j0pggnm6ajjz24bnlikm9zzrs6l"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -342,19 +349,20 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.5.0"; sha256="0g11rjb0373dc3a5m4padk43p4l204yw4lmvasnvk0p6cl0c4zlw"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.5.0"; sha256="1cwafxgai0lfwv7fdicrla3lj6k5lv7wz3vz6a0vqzhna3wb3ajz"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.6.0"; sha256="0l64cb1zqhz9wbm4chbapv9mzm9k0h9v7xzga3syydalzaqlln5l"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.6.0"; sha256="129w24f8k7kg7h99jh6jgrvriy1avblz20dk13linhf9bk466vaw"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; - fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.6.0"; sha256="08wfrcmbpgbgfzfr9gpg25073905fhz14s8jz2wckdmhwjlgavky"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.5.0"; sha256="18r1m5b6v4km9cdyd0pkxvargh2bcz876y8iwqhbxkf16b9d70qj"; depends=[AnnotationDbi]; }; + fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.6.0"; sha256="15kwa0yl7n0nc579xi3il7yyk4dpijsls34gyd17v8mi4v1a1kwm"; depends=[AnnotationDbi]; }; + geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; }; grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; }; - greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="1.0.0"; sha256="0y9570c7cchwv9d5rgwhfz6k5qmi11g2smqq8q23z66iv333kii1"; depends=[metagenomeFeatures]; }; + greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[metagenomeFeatures]; }; h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; }; h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; }; hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; }; @@ -479,7 +487,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.7.0"; sha256="0ba3yvizj9ya61rr9ik2hdxhy0q67908x16n58jjjfq8wf96h7sp"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.7.0"; sha256="0chkxxpfl696qqiai3i30ylpsihyicbs0hbcni6nmnhfz9k5800g"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.7.0"; sha256="0wk2lg74zkgxh6frmikhk4bxndiyvc1j7mhvz65w8fxfqiwfyf5i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.5.0"; sha256="0n1qrah9h7n4cjpvhqrimcl42p413i2wmkw6iglqg1gcbkbrihvh"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.6.0"; sha256="050cwz99yz27gyrnfhkv474vqz5rfqbv2f7wdjnaphd9xxq8xjr4"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -517,7 +525,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.5.0"; sha256="1q6m85ck84qg3fksmfmcrqd0s2yll9n6c3rcknh5ndmy30wdn9pl"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.6.0"; sha256="0874knxhybbi6idfb9rig3dhwb65xr7imkgqg1yl3scikyvpn37m"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -544,7 +552,7 @@ in with self; { mgug4121a_db = derive2 { name="mgug4121a.db"; version="3.2.3"; sha256="0947crjk8nj4bzgwz7anran7y2qhd1v8bp9f59ja3628rgjx6cz5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.3"; sha256="0x4mrjqd9wnppkp757f3azllbjiilxfds3cpbcrfsi07l8lf4mxx"; depends=[AnnotationDbi org_Mm_eg_db]; }; mi16cod_db = derive2 { name="mi16cod.db"; version="3.4.0"; sha256="1v64plvn173hdvjyy491qh2wd4mgbpwr27iq7lab9b3w1g3b1a82"; depends=[AnnotationDbi org_Mm_eg_db]; }; - miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="0.99.5"; sha256="0cxkxy42ybnls6396m4svm4iiw0x29fgg98dfwpgwfv5np85m0vh"; depends=[AnnotationDbi DBI gtools RSQLite]; }; + miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi DBI gtools RSQLite]; }; miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; }; mirbase_db = derive2 { name="mirbase.db"; version="1.2.0"; sha256="0l7ah1ia7q1h16av2v1qa9nqpr0604z5dlrq37kd0aiz8dcxyddk"; depends=[AnnotationDbi]; }; mirna102xgaincdf = derive2 { name="mirna102xgaincdf"; version="2.18.0"; sha256="03q71dq6b0plivj5bgpgx0pnqdwfgplakyk5ggj4w7kqwmr5k17i"; depends=[AnnotationDbi]; }; @@ -571,7 +579,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.7.0"; sha256="1s7cdjglrc9qqf3gsmhsyycfa0h5qrbk28i4z3z4mb9g6242r1r4"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.7.0"; sha256="0l8y2zbhykzqs9hbjhj1cys1mzdjhmi4rjv4l3v0sv5969h6sl96"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.7.0"; sha256="1mkw3997mqr7ssa60zpwhlyajda51smcrnlnxwif78g99yj0nrxb"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.5.0"; sha256="1plw9bjk75qyn5lb2ybvwbq2hrq67fvx0mf2m4dhr88wlncfynl3"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.6.0"; sha256="0dxx2853blbsbxn65md4zlp59pdqj7wraiq39spxlbkail76yggp"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -608,25 +616,25 @@ in with self; { nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.5.0"; sha256="0dzd281yi2vikzr4civf38wy8gpsdr9k2ks9j6sa2rnsnpf1hnh9"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.5.0"; sha256="1vpzciar4lwq5r8faz1mh9y085i71q0gcxz5c2gn9469qbi5ymmp"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.5.0"; sha256="1qcl4px85qhim5nndj4j1ajyvby8ldbr0g0pml2q54wnjs9f8a8f"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.5.0"; sha256="02ggchixlmzywhsbr0h2ms4dravv7m5964cjxqcjxqs16vjwlbk9"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.5.0"; sha256="0rdiffd9v6g6cwrd23jspj0bxyds9l977pv27azagw1f7bkdqgbk"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.5.0"; sha256="033qak1d3wwz17va0bh8z8p8arx0aw2va6gm1qfwsvdkj9cd9d7d"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.5.0"; sha256="0854rqanjzscvlq7rj6bvlxcfyhwiqwi4lnw7abzvv0zcwvf07i0"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.5.0"; sha256="0cydh8rj9r2g6wzs42sh6cf77fs0nrgww4jsy3x61aa0b8lngjxj"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.5.0"; sha256="00s7p7wrjd57wvwxyhb2m603kms2pm67rr3m83dp2s0pa4ffggmr"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.5.0"; sha256="1q5g9ka4fxjq5jp0mg6x8j44995y2r9hvs91qaan8xcmsa900q3q"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.5.0"; sha256="1v6wa5613cjq59xd7x1qz8lr9nb2abm9abl2cci1khrnrlpla927"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.5.0"; sha256="11q21p3ki4bn4hb3aix0g775l45l66jmas6m94nfhqqnpjhv4d6g"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.5.0"; sha256="13ia5ipyif6cxj4gmw4jl0j84iwj4289k69qgfm6qsw4xdc8amln"; depends=[AnnotationDbi]; }; - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.5.0"; sha256="08pldh0j1z9csbyzxn89xk9ir1av1dd4jbh79l04g4s34x13m8l8"; depends=[AnnotationDbi]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.5.0"; sha256="1sbimln1v575pxzsgx4sw5712nwfy8n188limrnhwg7brj893wrl"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.5.0"; sha256="11vnia08kblh3v4jypl6sw94p1n6702zskxj0gv4ijygaq61m5x4"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.5.0"; sha256="1h3wa5g65hg9fdg722w520gb6c16zgccg62vxgd37gj9bdnywg5w"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.5.0"; sha256="1wizm4dx6an2pfi322aykis41a6skhgv8yjyfl2pdi0kizlvw26c"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.5.0"; sha256="1rhz86d0ly7z79pbaf7s8kw1sx9ys8bawfrcgs33km2dd2cgzzi0"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.6.0"; sha256="1bqwvg6shkx9764yz8qzy08yhqjajhzgbjmk9cn3fxjipk9v523k"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.6.0"; sha256="0vfnfg0cn5iprrsyqn4gjsq9p5fz7imrl16v220497af9k9zg88b"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.6.0"; sha256="1lixfs1w5bnaxc9fyrvwgz9ldp4kxslgv7lm4icvcn517q3knsi4"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.6.0"; sha256="0jvmpm2yk4lr6cjdzqjq6dl4gjfgzb12v8xxws6a1gjbkwyirxd2"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.6.0"; sha256="1xzwi14l2ia5701rzfxl3qmf6nzdlg1a6k4p2q75fxw7c43nkp53"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.6.0"; sha256="0zljw8f7b1c1xlb0rpb3m9p1dj63q7m4ai5dp5qm26wjlhqyk0zx"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.6.0"; sha256="0hj1zxgxxn7ljl1apmlnf2niyb5gjqjv8y0mb8961y8b2iq7wflf"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.6.0"; sha256="0pqxbnry2k621szw7zpfg6yn1m3icz3l7l80xh5q4gc2vqri59i8"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.6.0"; sha256="04gscsr3mrqdprn8jc2ns1mf3h9nm19zh68fayjf0kb1j91k8hdd"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.6.0"; sha256="0jm7k4l8bxrbkhhn1bbc0l9622mszk6c2galrgc3bc091frz1w56"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.6.0"; sha256="0jav4c8av85380lbra41m33ymqy0kx4czni0kn3cpsa3sfk3ij17"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.6.0"; sha256="0l54hi68y6j5jjk88rgy7jhdcjbz6pg474kbpcj6x9z77i0mcfgr"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.6.0"; sha256="1y60cvnw5a7nnxryyw97fzrpsic4napsidhrd61qpp6nkbc3aa73"; depends=[AnnotationDbi]; }; + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.6.0"; sha256="08kfwsyi0bbmkfqyjgj4m04dmav9nzx6kskaw90ayrj2jv70ci77"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.6.0"; sha256="198w077sifyzsrx2vcb8vbrlk6ln6q74lrgkh81sbwshik7nmy4f"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.6.0"; sha256="0v2qx1hghlwsgf4lzax6wf3snc17ll4rrhq6za1cf1a0bgvjf28f"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.6.0"; sha256="0pprpk91j95ycr7hnd6a1n0aflbn3ibaizl2n2gsfwyjs2vyzq52"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.6.0"; sha256="02mldrxqmfwlf4fjlc6i9qv786zgr9cggwrfpkn5inj28hh6s29j"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.6.0"; sha256="0p76dj2l9r1rsxq0yh9fsqp22z7jg7i9sq43v5kc32pfgn4nizas"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -800,10 +808,10 @@ in with self; { pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; }; pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; }; - phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.6.0"; sha256="09gnsrv37pzpbyx98vjcsi1kavazz4hkf7r48dggdad9lqg0fqnm"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.6.0"; sha256="1g0yd623sb73h3nf1mszchiyw5mk4dlz2h7mqix9d8xdsqmrc81l"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.6.0"; sha256="1p2kx6zrgc9yzkvmizzrlhhc75mnxpjgslpxm3kcmvsg12qd4zmz"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.5.0"; sha256="0xga9i0bicxbbc9rypwjw376qqg401smwwqjgkdgf4i5lrds0xi7"; depends=[AnnotationDbi]; }; + phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.6.0"; sha256="0qiym7v0z6rr68191lj5hnkzdjc4k61cbjvzj59x5aygba6clm8y"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -832,14 +840,14 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.7.0"; sha256="135cgn92raa6f9yiw4k25rn04rpg5mdnf969l66x4s1jcc0rwscq"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.7.0"; sha256="0lp4prymrm3cp8yq1hba9bylw22hcvlx7piqpvjx51hj79yrwdig"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.7.0"; sha256="1b7s2r4w1yy2v3srs6n931zc64qf58nq4apmq2ag5nx50wspima1"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.5.0"; sha256="09kbsaksmas6avcdlvbg6kvdw6cf156i7qip9l0mhv6qyqhl0p36"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.6.0"; sha256="1dxmdc4pvr3bl5vc6pw10ddqknxs5ggmr1zvmxgrk8girgkpja1h"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; }; ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.62.0"; sha256="097na9ms80lxpc4qaagaqlxs7kjsjpkq649f2jqbav0mkph52bdh"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.64.0"; sha256="1wwgi5wr8ax0wns32zkz92wzh8ivq3q19m4pxvs8rrgwnlbyp81d"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -853,7 +861,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.5.0"; sha256="09i0f2ddss092awdmhshnndniyy3pzfj56nfbkgrj0y22lgfw875"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.6.0"; sha256="1vlqd4qk0wph3vmd125dw9iipgljf2s3i46kr7bjswj0k9k4385h"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -890,8 +898,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.5.0"; sha256="05r29cqswz3ph3adymdigayv5ci19cd02y26kjbgwrh38xha5cg0"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.5.0"; sha256="136yrk7qlbzy717xy1abpn5l42j0qzal72y0p20wwxw60xhpx1rv"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.6.0"; sha256="0k99b64gkzmvmrypd5r96k0y2i4ph0kr70kkfnhmmxgwgd8wg0db"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.6.0"; sha256="1jgdidzpka00w21358rj2lrz1chh518iyqlrj3c5rsamrisdyj2c"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -903,7 +911,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.5.0"; sha256="00rp099g5302hy4g4h6j11nslc2j6p58ax80mnswhzvfr37sb99f"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.6.0"; sha256="0xv4v1ybcgz5ha7g98zkfmi6mw0ywrdfspzb39rj13np9bwrqfcp"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -912,7 +920,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.5.0"; sha256="1mkyhf1vz0n98zs941v5f7nl0cg0s873ny3m6vdpj5c9nyqc8hxs"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.6.0"; sha256="1c7m109yrpvzhj330n8rj1ppvwxr96nlhhwc48rj687qd1fnbj48"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index f323532ad7d9..fbf8b26f0ea1 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,332 +4,343 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.6"; }; +let derive2 = derive { biocVersion = "3.8"; }; in with self; { - ABAData = derive2 { name="ABAData"; version="1.8.0"; sha256="035h4yrna11d2g3iqnn52sv07ydgpa2my4bwcs4a9di0pf9rbm06"; depends=[]; }; - ALL = derive2 { name="ALL"; version="1.20.0"; sha256="1kz3k99dxam9zqpf1hg4z049f7dliyw3kg9cms1sma2yl5l7nj2y"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.18.0"; sha256="051hhfrz4fx28hbi7fycqqbnij9lxh6spj2xqj37nmqc8wx2qfs1"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.14.0"; sha256="0pxwvghyvd3c717lqixkadh79jrv0r0dl80ds688gxgw2pfcwr6y"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.14.0"; sha256="1ynwl9rfc0hdacvdmfdm97ya14jqf8q8w93m2vd58nh62p1jmprp"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.12.0"; sha256="0bbslhfipz0s5ill8p8wfr47ikx2lg1vi9h71rn0wx1v76q5sgpf"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.16.0"; sha256="06q8ixh2zwk4143ppnrdcvgaagzy33swsrlp8l3lqp943fnn2hil"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.16.0"; sha256="1nqdxp33xl2lwcf5lq1v1k2qnid5pf7wxbxldmr0rl6jxlm1r5va"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.16.0"; sha256="1j4czciqiaj2fqf7v5yd41ln31gl6sqs6s07i9pwyclhw66f3y56"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.18.0"; sha256="0bc2cdqvqdalq5hqhnnzayh2klnzqaw6micgsk35mai0lak34rpd"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.6.0"; sha256="0cbgmfciy9v81jfn60mw98csxxdmm3hfqdwyaigbagj949alnbcm"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.8.0"; sha256="1z7kcl25hpl7r7pshz14cm5j635qj451df1pfd9giygn7y9kpf93"; depends=[]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.16.0"; sha256="1yslwgw504xbplq16xnf610rs994p23xm9qcyaa9f0lzhqgkksap"; depends=[beadarray GEOquery limma]; }; - CCl4 = derive2 { name="CCl4"; version="1.16.0"; sha256="0w1mxf7w1yk7kjqam7xdb11aj16pddk9wyfd1ps0nqagzvjsn1qv"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.18.0"; sha256="1zhkf75bhx8z0s4wpjyc0xdv9aifng25gpb8fkvncpd8lmmdg6gd"; depends=[affy Biobase]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.14.0"; sha256="082cwdyzq3h1sl39pn2c3ix5cp6mjczbvvdh6gii54181qkg8r2h"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.6.0"; sha256="1ln3s3zk4yi7qjjqnvxg12x7qlnz77k29nbjv5zbpdxdjyisnq4g"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.14.0"; sha256="1qi0l4rf62gzqg14zalcrisklfgbzahhzahyyd5q898r57xgif7b"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.14.0"; sha256="11ir7v1xlxwjxjj1dz3i7j1fmq9xnhd3qc7cxippr0w4867cw8pc"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="0.112.0"; sha256="1c6lvzjddm2sxxjz452nmaadhvaz684i3gyvmlibhqaxc9vr09mx"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.10.0"; sha256="0jlikfjgmjiizm28srbws7sq1b7h45gb22m4q19il13rdpn6rfls"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.4.0"; sha256="064hbkwxfl2sb4vvvmm44skd34g87vgw6nv0ml8vyhba5mmszf84"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.10.0"; sha256="0cjwyapqv4d6mncg4jy1x5qfz7sim9vqv6m007d0n05ly02qn4vd"; depends=[BiocGenerics GenomicRanges]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.16.0"; sha256="0bj7j6qzqq6zy87r1sxdnlfqvl5r6rwjm5pd09jf9b27r6bf1r44"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.2.0"; sha256="1f1dwqylch21kch88y96h41ma949y1xvfhj5ldqkn4fidb2f90kp"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.16.0"; sha256="1ppybav3ag2x75i1w58prnxvrmjp754ywwgm38kfw3vs55l0ijv4"; depends=[affy hexbin limma qvalue statmod]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.14.0"; sha256="02xffm790lchv78qwxgi0rfmk496hdc2970mm1maa7agy9wk56f8"; depends=[]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.10.0"; sha256="1gbvk32kcax4w143ry8w376gfglqm128sas0pnim4nc1ikd7b7j7"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.8.0"; sha256="0rkf6gwcvccci7hal5cxb04b7g8cx46ivvzplgfn5sn4idzj187f"; depends=[knitr MSnbase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.18.0"; sha256="19bxaapggfx148qvi1jp82026psiv669iga370bqva4dhawgmc8a"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="1.14.0"; sha256="1i1cf4avmq6rrcvskj17gmplfa647fvmml86wkr8skhsj03z5s63"; depends=[GenomicRanges]; }; - DREAM4 = derive2 { name="DREAM4"; version="1.14.0"; sha256="1z1cddkk8jspnm3h1d4fdc6v14sqflzryqzvvzd0z3fp4lr46vkb"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.14.0"; sha256="0jwddzfqfiimcfmz9jwari493dppyxnyf0fp2k2s1bp98d50bnfb"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.10.0"; sha256="066davl2ga9pjl12zcgchmsprx3hz6zsb2zpnrpbijd0yqv8fjih"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.16.0"; sha256="1za9anbfb36c1js2qhgqgxsjmkxfhkzyfyizzvqn1v31r101hsq7"; depends=[EBImage]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.14.0"; sha256="0315kbc8fsn95325jlr2b83094f4mnk4pc5sihw0n0637nfpy7ks"; depends=[]; }; - DvDdata = derive2 { name="DvDdata"; version="1.14.0"; sha256="0chiajirlaf8b28nhr315429hp2x7mfff7fkax9kqrfz308xbcv1"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.6.0"; sha256="1fvfs8bnf41fz2skahj4gxczqkgspnga84rlsrgd0shhrkmns9hx"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.2.2"; sha256="1w1zs37bsj1c6ywvdbjqilg5wndnmysb0w6sbaashd39z6w9iwpa"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.16.0"; sha256="19id2z2mzjjnxa956ppjhjq1a4gk916cd7k9cqs39lsbxvknp7nr"; depends=[GenomicRanges rtracklayer ShortRead]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.14.0"; sha256="1bkgj1czb6ap7xx53bzwrd4azbfkpxcznmdvl4q7jgd34l1ms78a"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.6.0"; sha256="1b6cvzljgcpq9vzs92yjnnxm741ypjw13c9lnzh3qjv73nfgp5l9"; depends=[]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.14.0"; sha256="1c0zdhk81g30v7yq6xvhanmb550xdaann6f4sskbvy5fa6kb04gz"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.14.0"; sha256="081ki0yjdqngsdibpjnjs8lk10wfvgr9i5i99c837hl9wgfwd9v4"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.16.0"; sha256="09sb67dnv97ijljayiny3p45ddd2c01pd8pjj15sjjk8717lf65v"; depends=[minfi]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.6.0"; sha256="16wvbfym2mz9ypmym2j3j5f36vdj100anc5hpwvpzh9ing62b00r"; depends=[minfi]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.4.0"; sha256="06f2zmkqzkrhwdx58pxzcvkqbckzg9k6qjlngbmgnnb9mi0hx8l3"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.14.0"; sha256="19h4xvlsl61bpkdqqfrqw4iz9v0pnfxp1q8z9nn9m9wqf9cc3rkc"; depends=[minfi]; }; - FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.14.0"; sha256="0zsffyhd9nxsg3a34sd2mycbvs8dsw96pqn1jj7zw5whldjihjwh"; depends=[IRanges rtracklayer]; }; - GGdata = derive2 { name="GGdata"; version="1.16.0"; sha256="0s5wh3nxynxx4skgyxvbm4l7lk6rphcgwh71nr24a0a4jid0jisp"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="0.112.0"; sha256="10f5g78mqlzm3ygix8h08134k41c7k9l3j39q656jpdwmf3plkh0"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.6.0"; sha256="031x9w6xcgk30ihmgxxlxrn0xjm076s34cfyhw5pap6f3f0x8hi6"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.14.0"; sha256="1zqm9g1vib9r6rsj7wim2pkv17pl1136k3k5rxmyvgx7rl1sb5li"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.16.0"; sha256="15zki8i7mv59xr6rgfmf0x33mkvf8fv6h5ya35iydx5409lyaxm8"; depends=[GWASTools]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.6.0"; sha256="02vwxdb4dsmx3iw3p8hfvigw67hrggycdxkqpkr1n03z6g50vbcv"; depends=[]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.18.0"; sha256="102hv9ivrmdjfrqnyg9g3qi4y2i9kdby9xswlq5l7l14vbgqxn6b"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.16.0"; sha256="1spmx6lc0cpcwcna2sm5mn27n66rxpzw30biq11ca2j7ax0phh8v"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.18.0"; sha256="12gi6idn1vgl13ir93ig60mmgfak5l35bgzc75paa167iqvfswff"; depends=[]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.112.0"; sha256="0wz7kfj2mkrg4q53w3ddj2l4didlmckkck5a80vk51pflfvxrdhi"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.6.0"; sha256="104ws2bpy865m2hjfgj1bha4ix6kk96ml085lksz9vszkxhi7al9"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.0.0"; sha256="03czwi1ps7lpjppn5mpfa013rna0z3ywb783a31yv7g93r97gqna"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.4.0"; sha256="1c7gfhwr9g6hv0p3s4yd8v9rhjp3jmrnzsqsqq4ysc2i24nf7drr"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.112.0"; sha256="1qxg7650lbfbjl9p75clrybsdbzd0yzpi8pi2biv83jgqkkjrd0b"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.14.0"; sha256="0708xgm495a330h70yi2qd494h6gf0n46j016mw9bc4gzbb7aq9p"; depends=[]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.14.1"; sha256="0b47hi6di0gy4f8bzhsjm5ag5jhqqsgh5h19h4lwr5jcg2710ang"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.4.0"; sha256="0xgb3rrvgrx6sdwbb8gb1q8mgf0s2giih8l8d3hzvnxazh80qs8b"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.6.0"; sha256="08gkdi1lra9mn1cbsqddqn3pwj3pfy2yfgzay5igr7n1akfmgh7k"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.16.0"; sha256="1rrfxc3hzlq2i0z5j432w3s33ln56i91a06q49piisz06vviz6yv"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.14.0"; sha256="12mdy4rb8gzhgdqdwvf96lcxmi37wysyanpw1dym03vq6fxmcfrq"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.16.0"; sha256="149ip8wvbiz2k94rj6n1ims4iq7zkgicrxrkn059bvxgj5gm6pvq"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.20.0"; sha256="1s4ya32pfmz3fil7v3r8zm13f80cx5zny0ywvh6ln27a7hr10ida"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.14.0"; sha256="03mrbgyx3jf4ccapyj04akf40aqbmky03fgicgcaff724kwda8rl"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.6.0"; sha256="0ki62mfjk7a6nsk0079xf3w8c8an3syy5rhlqcmyynwab344mqm6"; depends=[]; }; - JctSeqData = derive2 { name="JctSeqData"; version="1.8.0"; sha256="1zd270pxiy1d5jr9akgvf77jbllw82flrhx3q1z1m0kds7xlb398"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.112.0"; sha256="0w1x4ab9i40y8jp3yhwcv0lyh83g926cwav77m179mg7n9l6c3lv"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.16.0"; sha256="034j38cd81fkay7h7fjjk56ywhvbq6pdc0ldxizrfw3z8hhacy85"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.4.0"; sha256="1difb3nsalc5rl9bbaj0g99d5sl3sjlmcy4qq0mddaagw4b5lyrr"; depends=[]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.16.0"; sha256="1z86ll0kpmd9jq5nq7fi2yhvp3ifqfmjk7gfpgd2mq28zw8rwn47"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.10.0"; sha256="18k3m8k0jdry8qih7nrd7sxlvpcv1yfjj1a6y6a2ifmjq23ymcsl"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.14.0"; sha256="0x0rl6iibspl9w82kbbv7bf9mfhs60j8ly7cxm908x5xfzwmms05"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.16.0"; sha256="12k305wv38grgdkypr7bvhxd1ca1vsxmyz7487yfv1nl72sla36a"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.4.0"; sha256="0wq5vmk8p3ng8snljrlkwx6vl38fnwq8fn5flymfnq1snvci22h2"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.16.0"; sha256="06vmzicndnyb4banfjv2mgy77cqqbdrx0y7pxyvvpfy5xl1kk3ii"; depends=[affy Biobase lumi]; }; - MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.16.0"; sha256="0jfq8pc2arpp5kcdhsgvz08nm7sjambh7sx1n204glqm61mv5rqw"; depends=[affy Biobase]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.16.0"; sha256="14p1ifaadmkpykgh675gk03aspc1159k8s9ksz17p6bxkwy2sb6v"; depends=[Biobase lumi]; }; - MEALData = derive2 { name="MEALData"; version="1.8.0"; sha256="0r4c7vx2cpix5ryjv7314zf30ifivad7yj1wi7a0pck6rjbny81j"; depends=[]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.14.0"; sha256="175bzk0yrwhkwagpkvi8y87l8zfhgr44xkpkw4jii3whpyxgaiyx"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.16.0"; sha256="1110sgklk2lmvjggvcm3wzfipij6nj8brq7bdc9dbjwhiiqdv0m1"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.2.0"; sha256="0vx8p949sxsfp9ajs4dwh2yf01l9lclngr7ync3r962knmd74yc6"; depends=[]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.14.0"; sha256="1s0fraym521bv35q2ms1v6jv23bvfypwkhcy8ffhf6k1lcr4q7gj"; depends=[]; }; - MSBdata = derive2 { name="MSBdata"; version="0.16.0"; sha256="0lygk817f55agf4rvb85k50ns0cy8wckbqvwqb3w22z4plixyjjf"; depends=[]; }; - MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.0.0"; sha256="1hgwcd4r8x489hyz747psyw4jfbia6yw5mjrm745z1yl8y445mq9"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.112.0"; sha256="05gjfd4vvkp4mdrimsxjwa3mgps1cwdwr03w1il77awa23fvqp52"; depends=[]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.10.0"; sha256="1rklalmjckm5ysvfjy4arqafabjp8w4495v385mgwrlv6rqa5yv7"; depends=[MethylAid]; }; - Mulder2012 = derive2 { name="Mulder2012"; version="0.18.0"; sha256="1bpc74xiyh1az8nkgqpwk3pa2313r7qcxdzdqa7sr8drwhgj7hbi"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.14.0"; sha256="0764l9lxc64fjflzqqxyjckxrsjxk89k73g3kpdfmkvxdn7nchh7"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="0.112.0"; sha256="073g9krsmhdh3fygqd3rfxnakxn45nvxs0zr7k6xylq06yfy3gza"; depends=[]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.16.0"; sha256="0dvdq54jp5q59iwny008m1qyj9s6gb4blmzjlsnz3505ivai2mgs"; depends=[annotate Biobase hgu133a_db]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.0.0"; sha256="1wffaljwgl0r051bj5vf0wjch2vg5y8pkwgbhdg6k6c97pf9gyd7"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.6.0"; sha256="1dqhwz6jqgmnvias2hjlnj10c0chsvhj904rgvk0ch9y47v0f4yx"; depends=[Chicago]; }; - PGPC = derive2 { name="PGPC"; version="1.6.0"; sha256="1nfkj3ipl52xscz8qpmaspydvfzsjacrw89alhxpgsb71d59nbkj"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.18.0"; sha256="19528l0f53nfnq1sdsbp3y6z5zx933csz5f72mh43408a6d384rk"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.12.0"; sha256="0s3dqm1yiy4svkb6cj6xf6i81cc0mai0xjlbl3jvqdpy7npl0a08"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.12.0"; sha256="14wqs4lxq1zav24znvqmkzbbqfapplg7xib9kbcxnqxkr509x4fz"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.12.0"; sha256="1zmrv53944s7a6cm96m2wgj6j9cfg5kjwgdfalkmii3vm400f6lr"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.6.0"; sha256="0wxf6p5r7h9zaxkzg1bf294d837klwscbd0gcxms26hgdj7pv2d1"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.14.0"; sha256="1k5npvxijzf3f7fxkmljajmjmfpkd36q8a2zpn24c4v19vglnmzx"; depends=[]; }; - ProData = derive2 { name="ProData"; version="1.16.0"; sha256="0vgs9xnwrqfn8px4c4q0y3kxfwk5zldwpykdhkjn63ycamlfmq25"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.4.0"; sha256="1qilqzfmhb4fq2rkafy200s94gaj9ln6c0j8gw3q5ql6kzclkq2i"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.8.0"; sha256="13b72z76z5nqb2snga4rn0jrsd12c13x4b1q9i15j2lxnklcw11w"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.8.0"; sha256="17azrrn9fkiq1z4xxcg2afwh25iyvi93lq9p13zcpzg75fx5ccvc"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.6.0"; sha256="01i0n2sbi3l5gmkrvnc5r1c3fv57xli1fav7yal1x6vckqgma2ba"; depends=[]; }; - RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.14.0"; sha256="0znhpk57bivhn94vd1czcrhcigi8wcascx9ycvbvfnbnibpwcsac"; depends=[RIPSeeker]; }; - RITANdata = derive2 { name="RITANdata"; version="1.2.0"; sha256="0jl1grvgmrvvv5f4p0s6ypcpfbdlrc1s0pqqib7fw1qi1hmik5rj"; depends=[]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.16.0"; sha256="15i1yy7vhwbz3vjkcdgybqaiwr3x7w9fplscachb3xpw6d5g52n0"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.16.0"; sha256="0z3ijyvkajpa08d6i1lb1bfkfwhqkjizwn17hrinps3k9bzymni6"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.16.0"; sha256="06ja4rm3f310vj1sa473njsgaagmr3zz04pj3qp5cpq1pdcgsmfi"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="0.112.0"; sha256="1vjh1x652ll33sjahair95n1l98z847ks2907g84sbkwhvfzhkrm"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.6.0"; sha256="0grqjfiwi9i6whgiz73xz2havcwzjf3r23rg5wvxhk1bapxidxgv"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.6.0"; sha256="02mr0kn5hf2nqi2s7lk440c6a3n34a8apb1j7rpi8nxp4lp757if"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.6.0"; sha256="1mjxpdwziv0xy00hn0n7r0bvgh1gagrw77b5jnla3pz0nzhqwwhy"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.8.0"; sha256="03m4rzzwmjzj1ijg10ir1d5nmix04l0mi2jkddiqgq8ryl231dk2"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.6.0"; sha256="0v4z9hi9n8fxlk1gph7xapz2sgrakzm32xvl4qyjvqcfzmrvsjzy"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.6.0"; sha256="1dcqjfkjncxa32j2dp1dlhfl7cjlr5gpzsxvbals420sqn6pbh0b"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.6.0"; sha256="0iydym4bggbdwcnb916wqx9d8xxdm3aqbilknf31fvn7gyx76n5x"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.8.0"; sha256="1jyg1h1g6bkz0rvpsb0y2ksx2k8s1lm6i9jrkj5b9p9sv28fdiz9"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.8.0"; sha256="01s06w9aavgr19jf3kswxb2bg4v5r3j5md17j4qf698l82pjkigq"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.112.0"; sha256="1sf4fbrgcmq4jy3g4kh8xlbmvvs6ww9s8p0z8cba2ga0v440nzk4"; depends=[Biobase]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.15.0"; sha256="1jjc0hs6nmx56l5gl5rgqkrpv3shdwl4qjvn25ayv6dbvxajifw3"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.10.0"; sha256="0ixc2vhfm8y51p7iycr1mv98dacazj6f7bn5naffy607d9ryylb2"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.10.0"; sha256="14h4lqx8jymla7immhiisxkcch5pki26yk9ywgh2mwwkz5b3lmlr"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.10.0"; sha256="0adds1l1hp4cv98jzf4jp6rhwfyv63dnzcp7gzb91wq9wmmhh81w"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.10.0"; sha256="1a4389ds0kpq8q1brf7r7f368x7077qf1x53amixi4s15z3sqxzl"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.10.0"; sha256="1q7gqs3n9cv6fn95n79ir6p2jxccdx133az4f3ab198kxbdkn5bc"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.10.0"; sha256="0mimmfhssjr1h2fb8h0m7gjaw5z80vsnzjlckx9cmirn9112z3iz"; depends=[edgeR]; }; - RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.16.0"; sha256="0p11ykzr0ypxsn3y0dwpggm826dszl3jzplvpzs60xgplj178m20"; depends=[easyRNASeq]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.10.0"; sha256="1ivxp3pi9dskh2q331dfpc9vz8g3x82sickmhk86mnhr8zwbkx6w"; depends=[]; }; - SNAData = derive2 { name="SNAData"; version="1.24.0"; sha256="1384y6jj8w380qppd9n80s41vz2g7lrlmckjszga0csc1qxx8dd7"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.14.0"; sha256="08myr18h36rczaqvrg2ckhrkivayspcr8p6p4400ynmafk8ihkkz"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.8.0"; sha256="1v4cp21h05yi6n26by8nnwajk0kl7qjlh4n9c9r81g7m35qyz7ny"; depends=[]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.10.0"; sha256="1hf6lz6k6xvlda7pbp4k3y15a9bid5k3r1fv64slj2d7ahpcqzph"; depends=[]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.6.0"; sha256="01rm6rhi7izycsbf4qmpn8bnkklh6r7c19dnb3p4mrw14ykcxsf0"; depends=[]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.16.0"; sha256="118cdjbaydibr8vi7jgf3jys0izph8d7986gwnq9fawbswdbhpp8"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.14.0"; sha256="0nzvc808lr3yp1gs60ifyq6ig52fqp1wy1pxazjcdsrxajpm8hl4"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.20.0"; sha256="1i38m224mdak52cd469nnm7q7f7llmwym9h03ldcs2i9azxp5dix"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.18.0"; sha256="0byb8gh2s7wlfdcnq9fkr92w7lxwrz48nlzprxd5b4kj91j1fdq0"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.14.0"; sha256="1vdk2z4jljwy4kpiy0bkf5ymx0hrc16ardh5rg1xvkra58z79p2j"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.14.0"; sha256="0nw9q0gkna2qja720hf766ppilxpi8m2plz68laxhzbc8bgq4g8v"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.2.1"; sha256="1ipl2lxwcp5ybzxw5hpa00c2syb5l8nnmdbdwchnbwj6j8gm97ly"; depends=[SummarizedExperiment]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.112.0"; sha256="1jpqpnyv3sc6pwh88gfpgc0dyypyi5fy1fim7ybggkc4zv2q69cf"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.112.0"; sha256="19965mwk4020xhs206n3gf8v85flf5qf2lnv6hsjfdsmi9clma4j"; depends=[Biobase]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.14.0"; sha256="1y39vdd7h90yw3rz68cbdv55hkw6a7d73ld0l8ihpy3l6ppqa2vz"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.16.0"; sha256="1zhwnpd2n5wydv7xi9ny8zx1riff3caj3lxr40g1fr1ps35vjdww"; depends=[TargetSearch]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.8.0"; sha256="0cryfc9qm6mnp0hnznqna372qi00cgjvc1793hrmnx9qkcyiszdf"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.2.0"; sha256="0gp2ij4jbwmqhi76a2cnn7wrg227vzvdkwczcsdhawxdjkys8q7h"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.10.0"; sha256="0d3zixbpchvgzrrslsqgp784w3wswqlp50462ry8b871qaqvh16j"; depends=[]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.16.0"; sha256="0z9rfxr3w0rgd6hqp36i24590scng6hcs9k82am7hvnp54jd3zif"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - affycompData = derive2 { name="affycompData"; version="1.16.0"; sha256="1l9mp2l41y1gbpv3yszq8bk5lrnbar8ga03ga14fsj1a4a3hzng9"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.26.0"; sha256="0ridqhk63d49wnsydf0iy5krnymgrjn3nxq7rnlzb85ryvcawqrx"; depends=[affy]; }; - airway = derive2 { name="airway"; version="0.112.0"; sha256="0b155g62xy39vr58ni6snskyssll8fv0zvn9jln41xacil7f5pmq"; depends=[SummarizedExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.4.0"; sha256="02fjs7liwh8m0n5hc0x51c7s718x3pv5a15qrf195bxsrx6qva47"; depends=[AnnotationHub ExperimentHub]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.14.0"; sha256="1255z9f75hbkzf6sbanck9rfm65z3vzg6kdjyyablh8wxbimjy2j"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.4.0"; sha256="1ahdk71ys4zf426swkyzmkaraz3lsjvn5dp4sdhxkxi5fmsx70mg"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.14.0"; sha256="1jw4lfh9p9m9q636jxq69lvjj859b6977k3jrdpjbr0nvr6phwkw"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.16.0"; sha256="0nbfxln9g8kl18ddzjsmcda1myymyk01ljm9x78cbjcnz6f4w3f5"; depends=[beadarray Biobase]; }; - beta7 = derive2 { name="beta7"; version="1.16.0"; sha256="0isvwy72d1764fq92h4315dxirvlp2crsgif9amcq13nv4rn40q6"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.2.0"; sha256="09vcahw61zz1pbydfl42c28da3y7002956vdb7nbssj6qnp62pqs"; depends=[]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.16.0"; sha256="0rmvlvhih00vvcjss8z31cfq5mqv7s7f2ysra7n9jrkb1hinzpmz"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="0.112.0"; sha256="1qqyv21bn5nf876f9l6xjmpx0jz1vrkk5swpp8wjkgsymcvni9fl"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.16.0"; sha256="0k5aqaiqzhxksfiwk2kzzwi7y0c07q8hm7fybn8i1zixvjd8iwfy"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.16.0"; sha256="1iw7apcpvivrqsircvxch1kh1xwqwf797d7psyz8iyckkd9kjwy0"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.16.0"; sha256="15l3x34xj07ja5xvwy9fsbsyccyfgqpxmghbcjvjl2j3lwfhfdb6"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.16.0"; sha256="098rjmq04ycfaj1yw116vgbll5656j5qk3xackidn4y0qkgqg9xy"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.16.0"; sha256="126w884byzkbafn1d1qjp7m27d6mck7d6l23daw41vlrcssxz236"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.16.0"; sha256="0pvn08jhfmnl530la1ldsks9681xci5ivrdawcq7ggh7bxld56q2"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.1.6"; sha256="0l2g7iwgm1jipz0vsik9dxsqslj7cv49y4mrxs4g9xsr2l9prm8i"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.16.0"; sha256="0v0k80zhjkilnj7f567zq6b994csyhqmmd1xbs3006jmnkbnf2ms"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.16.0"; sha256="11drh9nwk7af04nqgm4gn7lpsfxprg9z158l032jiclfv0dhkqgl"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.14.0"; sha256="002l5isc234cg6hs35rvl2iyql6azjvr7dc3rsp0z9nzh9gmzjrz"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.16.0"; sha256="15w2zy6cz4ivyw2j973x6alianqci1rqk2x3jzsjaadsij5bn6yd"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.16.0"; sha256="1k6f47hf18fwlmjk9k2rkym328q7kwam0yq7mlcavj3w59avydan"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.4.0"; sha256="0srpibvjf89b8n8gf01njwg8gbi7a174y3fdcmxilfrfjqc9n2ib"; depends=[]; }; - ceu1kg = derive2 { name="ceu1kg"; version="0.16.0"; sha256="0dfbm2zyp140n57b9jn05li0bb3dz5cyilmdap2c28fjbyxrqdva"; depends=[Biobase GGBase GGtools]; }; - ceu1kgv = derive2 { name="ceu1kgv"; version="0.20.0"; sha256="1bl7b9ys59p9mk54vvsxravmq4xy9fxw3xadkbfdapyj79356r4p"; depends=[Biobase GGBase]; }; - ceuhm3 = derive2 { name="ceuhm3"; version="0.16.0"; sha256="0f8lcws55zixrpwi9m1cqcz0g9k2bvx67h09sxhswswaalqq83xv"; depends=[Biobase GGBase GGtools]; }; - cgdv17 = derive2 { name="cgdv17"; version="0.16.0"; sha256="1rq6dm0c1d395p7qixrnl7m3a7kzgih5bibxg65rngcs3fpjw3zh"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; }; - charmData = derive2 { name="charmData"; version="1.14.0"; sha256="1y3lrmc8pqdnn1kqzy7r1flqlhj8yjj74hlrj3m49bi9isbv1yip"; depends=[charm pd_charm_hg18_example]; }; - cheung2010 = derive2 { name="cheung2010"; version="0.16.1"; sha256="0xhv2zrzlhy4k828kq9rjw3slx1z30g0gwrnz2b9fgrnbd4f8fjd"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.2.0"; sha256="0iw4c60fpsixn6r5102s3422dlh1vxy4bdfnf8mf8l3893fgj0zc"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.4.0"; sha256="10ldrshic91rrjvrc7gi1lhqdnw9g3j00pz6vwhp6qnksr6lxdpi"; depends=[]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.14.0"; sha256="0j9jgjcsjr5vc0k0h7bjlvrln57zbl7pibdk7sxb1p56p49pngq4"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.20.0"; sha256="1b8kfpr2m5r286ah01jha8js4bvqxw0kk64k1gll96ydi1j6nx7d"; depends=[Biobase]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.14.0"; sha256="1xwg0m4iijvilhzc7sxspj06pm1ysldasv89yi2vskpilm5y1gci"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.6.0"; sha256="1x3wqxhafhbns7bngbbqzmjxw3rrb0a4xa2z7pdnlhxxij10mycd"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.10.0"; sha256="1h0wys79wr3csq93yvz6rzy964ydjyzfciwjp8099mxrbxsw538s"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.8.1"; sha256="1ip9v0v6lr7xg1j3zww99n0d5ar8l4d3c74mfhl9jg9c27vqcq95"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.16.0"; sha256="15d3g7snphvqh8cgry52lqz7v2l6icxznwcplvp73chkr8skqi38"; depends=[affy BiocGenerics]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.0.3"; sha256="19mm3psjmd6rzr34hcz1h5di8smqppnh73jqnqk6mnhgfy1i39ga"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; }; - davidTiling = derive2 { name="davidTiling"; version="1.18.0"; sha256="1n7axspfh4ph911pj4x2r2dz1xmf6yk9hlnynx7pfmqlgzzcqcvy"; depends=[Biobase GO_db tilingArray]; }; - derfinderData = derive2 { name="derfinderData"; version="0.112.0"; sha256="0nv2n5417yp8bwdrswbpvni3fg58wl40425f58rdljm4rndk51if"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.6.0"; sha256="1ww6raiwr7ymjr4psrgf7q3f59vx32fcc0id9d414z5n8lr4krlr"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.10.0"; sha256="1w275zk4q5hfmjagdpmfa6xls82zkk34wz795lfnccg1bhvhvpj2"; depends=[Biobase viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.16.0"; sha256="0x5h4d0hpx1cdlbs2pmylvkhjl46j2vbw8m6za48iv5ksjaxh099"; depends=[Biobase]; }; - dsQTL = derive2 { name="dsQTL"; version="0.16.0"; sha256="02ha43xn2z085cyjq57d0n7919lj15bpy40kd0j9zwijyfrldz3s"; depends=[Biobase GGBase SummarizedExperiment]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.18.0"; sha256="07ggqj5bz8bna913ryb8wrb9jyr931nlpr5fggil35ms39xqf84f"; depends=[GEOquery marray]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.18.0"; sha256="0pk6livrn8wan6w44kxvhx2s5yjqf5x9gv5pj0mcldirr5fwkyh6"; depends=[affy ecolicdf]; }; - estrogen = derive2 { name="estrogen"; version="1.24.0"; sha256="0rjf95skgpznzwynfzc4mm5rs518x3ilqavz4250yp6g2yk81gdn"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.6.0"; sha256="0ms9f8925icf7ylrjz4akf147hii44qq9x3ddj0sy971a6ra8m1v"; depends=[Biobase metagenomeSeq]; }; - faahKO = derive2 { name="faahKO"; version="1.18.0"; sha256="0a43w7v0sn8z5qyjw0bdkn1jiwzsbxjhpjn9xr5lq1gba4wc15rh"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.16.0"; sha256="0hrn14nwz7xvrd7v0s4b29s22kczj24jklc2yyvij5icjlnr436j"; depends=[Biobase]; }; - facopy_annot = derive2 { name="facopy.annot"; version="0.112.0"; sha256="0zd7li5yf6bl9vhpaj0sx8ilv7pqyaavscdrr1lw8y980qiggicm"; depends=[]; }; - facsDorit = derive2 { name="facsDorit"; version="1.20.0"; sha256="1ppmfkrsdcmd47vakd4kxr5y78387wjpyanlhv9pp741x1jiyf5m"; depends=[prada]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.16.0"; sha256="0jla2cblvkahm1qkszx14dmhsjbk5ywz7sbg14s4x5xf0rv537gk"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.20.0"; sha256="1k32m49bhk30rbjryg77jhicjzga970p12wcy5bwzm0qxyj6wvqj"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="0.112.0"; sha256="0wgfb85pbs2q4wy59dqpnvvgw63kc9xr0smbjkp482nqv437vg15"; depends=[SummarizedExperiment]; }; - flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.14.0"; sha256="02cziq2jskrz17s05myqj8w1dfd49crnsga9l19xi67n2gl0dl5k"; depends=[flowCore]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.4.0"; sha256="09gcy0qv1crz8vfk4s58x054sbhnnfv9mvh1k5vcmlckppimywwq"; depends=[]; }; - flowQBData = derive2 { name="flowQBData"; version="1.4.0"; sha256="1gvbykmmgl94vmd0g1fccdlshjycll5jvv8vg3h94kx7r3vq8ymi"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.14.0"; sha256="10q3nhcbmq75vk1z5zlqsp03d734qmkicsrc25nas2gnbzqmbhwx"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.14.0"; sha256="11h9hwif6hcc3jaipgf5dvjj3j2rcp61phhvxz45r563m494s83z"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.6.0"; sha256="0ds6x0a5qpp3c8776wbq1zbz17i5ymwxphf9zkxgsnrmjw3cpvvf"; depends=[abind dplyr EBImage locfit tiff]; }; - gageData = derive2 { name="gageData"; version="2.16.0"; sha256="18w5wdaq1j2mndyjfiflawf411zwh1hhjwcxaxrwqnl48p25vg5c"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.16.0"; sha256="1c9pq8b2mllpsvwyb7w0gwh66kkabrdfadsqd6hagszbyy9sw2v8"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.18.0"; sha256="1zlxzy9wzzqfm9brd70kdvki5d9r6lsqc22y0m469ybcxypzvan4"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.16.0"; sha256="0p0yxm9i4ynhcvshxywxf6d9lhcr32xp7677ywc6q0ikvr6733zp"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.14.0"; sha256="063ivzxw02j854ivv5yxdw7a637svadf9n2zwvc3783y4clkfqb6"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.10.0"; sha256="0h7g5x3kyb50qlblz5hc85lfm6n6f5nb68i146way3ggs04sqvla"; depends=[]; }; - geuvPack = derive2 { name="geuvPack"; version="1.10.0"; sha256="0lin7wz9xp7rx34wykpmsd5w7hf0jzzfbmnb4klrvlys1c5r9xr2"; depends=[SummarizedExperiment]; }; - geuvStore2 = derive2 { name="geuvStore2"; version="1.8.0"; sha256="1fhq0r3hnv6k4mfrdhjsaylfi96vwv7j74dkaad92li4pizcz04q"; depends=[BatchJobs GenomicRanges gQTLBase]; }; - golubEsets = derive2 { name="golubEsets"; version="1.20.0"; sha256="0zsylgc1ml9ddnd5r4magmhn7k3glz50aw9aqvf251zjycasncz5"; depends=[Biobase]; }; - grndata = derive2 { name="grndata"; version="1.10.0"; sha256="0gqxvngjbxjd40z855vcrc4lqhx9q3b4bgicc371dkglsls4rpgs"; depends=[]; }; - gskb = derive2 { name="gskb"; version="1.10.0"; sha256="0j36kbyxrrp5h2m7747kprdvhidpcmm14lmqkd1c97ykx5wnzhpr"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="1.112.0"; sha256="169sg12li7nzd2zv6rj28qc6xfh1l7l9ipybrqa8xyqlcjhpq85f"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.20.0"; sha256="02pyrd8i1agx31ww4sw6xcwmncibvhqbys072w80rlx3vbjymn3c"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.20.0"; sha256="0vp1wkbz4l9cxld9iazdi59mkrpvinjz6abf34rl7qzbqnckgygf"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.20.0"; sha256="1ddxp4adf5nlr96n89hqjv9f0jvm0zknmwpibp757ic6zrk262da"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.20.0"; sha256="07cmawlx9wdbyzjjj5wh2h1a32d3ascr9h8rpyg6z1pdriq8cahq"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.20.0"; sha256="19wpwai8h0ix4cv17rgz4pz74b0qwby4jc5ry539fb8ls9rzvx1q"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.20.0"; sha256="0qjfmjww0rdma3q2nh6ax64zl7adx4n9j0xhc9s19rz5drsdnifl"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.16.0"; sha256="1hzlxha4nlvqw8ml6pylcmb7y986718yg7ff8hn344yfcigpsqkb"; depends=[Biobase Biostrings IRanges]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.16.0"; sha256="00mjbla9cwj656s174xbfcdmi8gr1xs7vksazrx25m9yn3dw23jb"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.16.0"; sha256="1ffamwyl5fax5n6x4nc01gx4kazs73jsm239w943jkx2bwy5j2zf"; depends=[]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.16.0"; sha256="1blm93a5ll7pn1yhbrl8y6wb1yvfvfnc1zq96kr6id9wxi7bl9hl"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.18.0"; sha256="15g6lmq6zfg2vkqliadqrmwivw2mldxlrf52myspmfl83scq973a"; depends=[]; }; - hmyriB36 = derive2 { name="hmyriB36"; version="1.14.0"; sha256="0g642694w0qsf27chdlw1g6924pm20kbgza4w57szcdnschabh52"; depends=[Biobase GGBase]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.18.0"; sha256="1nff23qa684xzy35d78sympkns7qa82c8cg21bgff3yhlw2ww2ws"; depends=[Biobase hgu133plus2_db]; }; - iontreeData = derive2 { name="iontreeData"; version="1.14.0"; sha256="1xj8psicl3yp17i7r6cg9v7rf1wvpz2kck7pbnhwppm7cshqang1"; depends=[]; }; - kidpack = derive2 { name="kidpack"; version="1.20.0"; sha256="007jlvpcwin2q09v4z79mnplz2176crgngana4mfpmx4sp4sh1lx"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.14.0"; sha256="1dvrfn3zwi5zl8fjp6kyqankqpzi2dhgzyj1dlp1bijy2y09lg7p"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.14.0"; sha256="1pya637a8yww5cm108w5l1ij2js9mx9mpq7d1miwqdqv2mi0liz6"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.18.0"; sha256="1jxk7abi7lkv8627vn9ydnmx6i4ycgicnl91j6r5gi0q3kffmmkq"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.16.0"; sha256="09v9r6rmfcqprqd1rx53sa4dhjjmg6d9649vlhfhzkyc73yknwmb"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.4.0"; sha256="0dflfp14gdjgy7qf3my0vas5zbg77l16li7xgv1924cry11w2dxx"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.10.0"; sha256="1bfx4imb5yg17n0g1ag436zlks4jcp8ga0xj9wyh9bhx4miwyay4"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.14.2"; sha256="04ymimgj8ng5qgvq0cglmhcxv7a3jqx9a2zyg8lwiwzpyip18inx"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.22.0"; sha256="0hn20i11vl9x23mx283aki097r1a8rspagac821kmlwghyab1mxq"; depends=[]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.14.0"; sha256="1iygqxymvb98cm325bmdqb34n9b4k1vdzdyzcq8a0gh1dvs2m0iw"; depends=[]; }; - methyvimData = derive2 { name="methyvimData"; version="1.0.0"; sha256="1b2mvcawafkr15py8h9j10w5givifi99h9clbdmkgfyixbbh0m94"; depends=[minfi]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.16.0"; sha256="1ym4wg3g29z7yqmxfxq95yxwc5n048fw3m4bp7dwcq1agnjn5qa7"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.8.0"; sha256="0h4a3vwzbpzs7rnkn3qgpmfp08a8x8vyy78zb2zl0pgnni7yrdks"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.0.0"; sha256="13fwzf91hdy4vvxg47xkl78qk4jfgn9whj41gl3pqbgxkp7b3d2n"; depends=[SummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.24.0"; sha256="0j5f69k9s0mppb62cffj3kscvvmrrwhf6x3xsw3bc6qdk0f3sv67"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.4.0"; sha256="12vxglizdyxk4hmj684cwfax4k1rwrz9lmm7khbqzhckzrgiqbny"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.8.0"; sha256="1dyr99wi3syzrr6vdxfcp7fjnx9p4gd6raj2r7x83r11g2rndpyn"; depends=[]; }; - mitoODEdata = derive2 { name="mitoODEdata"; version="1.14.0"; sha256="0vgmalrsnm616la3251p1fvcjpfg0wpv5zaxg20ikdc982zfk4sa"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.16.0"; sha256="0m2az0wv2lmdwa8c465cnfwmnmxmjz33ras984xbcvkh5a8i3gmw"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.16.0"; sha256="119z7vxd4yrfgjsd286iswklg0n07gzyckib3ivmm285hxphl79d"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.6.0"; sha256="1fpxy34gyngsz7rpr2ng77xb1bylj8s5i500mpbi765cva47lk11"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="0.112.0"; sha256="0ii7c6ynif55izkysw12vjphpkxyx3lvw0akfl18ypbiash3qf6h"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.18.0"; sha256="16wygr7g7vr3jsw9l6fzajid1cxffdww9pik5m4x55chdliq4f25"; depends=[]; }; - msqc1 = derive2 { name="msqc1"; version="1.6.0"; sha256="0csm35vzk9dp3gc8yfzli1rwanrah42yxsqssjfbvw5zcijs9npm"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.8.0"; sha256="1miqc8apjm8pvb9p4man688qnxpg04fqgidy7g9vr654hfc90gja"; depends=[]; }; - mvoutData = derive2 { name="mvoutData"; version="1.14.0"; sha256="0lwzsv8pmyyadnky9m0c3xf5dvm2qs8igkvrfaglsgl1wmymw86a"; depends=[affy Biobase lumi]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.16.0"; sha256="1pmz9vyvl3r8s6mfbd7k7vrz7qk1sv9136aykykvl139rsq7vwnz"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.16.0"; sha256="1jd3fwri705b4i1wwnzx41idc2lvwai6mr7k78666wl6a8275hcn"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.6.0"; sha256="0h6ll2csja5vnmylazb1qklz7ybk5hn0nxgkvxhhsmyqk9w7gk6m"; depends=[]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.16.0"; sha256="1rchf41zh44kzvim8iwvyfvgcfwv587p5p1yipgwf65hyc9sd0fv"; depends=[]; }; - pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.4.0"; sha256="143an0hs22dbglmdc408mfch53zcskbf3a4jfgiajz3dml81flzl"; depends=[]; }; - pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.14.0"; sha256="137lj4j0hlz3mkwyf334xr3bpm9j2jg1cd2sw9203kx6hvk92i2z"; depends=[]; }; - pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.14.0"; sha256="0kb62bm1a8m88g59v6553qg69rmv0gh0wy4yfkqvn2sgz51zk4r4"; depends=[]; }; - pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.14.0"; sha256="0b3cak7nzd6qxr7gnly4246gjdhxyp8h0w5dr1xsgwd9zy1k0psw"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.0.0"; sha256="10qhw7v1nzf4y9xhd34jiimcyi6lgjy6y9zc6kzk80hm6qiry8j2"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.16.0"; sha256="1ilwm4nx232dll01xqqvagq3qi6qa060v84y20ihxhfwdm46z0ci"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="0.112.0"; sha256="15v4yk9cpnz2k16ka4iyc61ji5ck9mlkabgzxalwfnz77ri23mk0"; depends=[GenomicRanges]; }; - plasFIA = derive2 { name="plasFIA"; version="1.6.0"; sha256="0p3pbjm5ww24ax7h72m38l0rcm01w5a4h8j5rsgynczvfv9jlwjq"; depends=[proFIA]; }; - ppiData = derive2 { name="ppiData"; version="0.16.0"; sha256="00wjgaihavx99qbcrx1sai2v35pm7kmkvybwdn7ndngvkzqixph5"; depends=[AnnotationDbi graph]; }; - prebsdata = derive2 { name="prebsdata"; version="1.14.0"; sha256="0rq90wrprj8xy60597dwq8ialjfyfcs8c2fgbskcm7ypba92brmp"; depends=[]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.6.0"; sha256="0f08mbwsac1nxvf4mwyjnwxd662rdibnzgrn8a0hcl1jmlsrkmg0"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.6.0"; sha256="0rk822avnfg3lydq9z995ki9zh7ch8ycg6nslxp8w5c3z4p447mk"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.6.0"; sha256="03min0za1paivvi45fl6nyksvhahpxlnqnkisj9312pb1x1gfm54"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.6.0"; sha256="01c519rp5jdphc9kqsdqcxsxkg00nhv3s82xlms6s0qdpibscx8m"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.6.0"; sha256="10qqsijkjwsw64am50vcjykxghgw51psq608yp9qj85l5d33kkmp"; depends=[Biobase]; }; - pumadata = derive2 { name="pumadata"; version="2.14.0"; sha256="0fsg1qcvfm2s7mpmwqih4pkgwphb4d1k8fah6gwvgc13q519ir2x"; depends=[affy Biobase oligo puma]; }; - rRDPData = derive2 { name="rRDPData"; version="0.112.0"; sha256="0305x1kkm5wbxcnw7kazrlhdjp91xrbxcvyypn6n0ga09ypk071l"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.0.0"; sha256="03j715sdprmdn1kazcyfy33nymz8kj52hxbv85a8bj3r2r1w6fzm"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.0.0"; sha256="1v7fvyabb8zjhzwpi1yamp0ch8zm32s820bfr366ir69dib66sa4"; depends=[ExperimentHub SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.16.0"; sha256="06mfgsvzn2s30skrrqm4m76kb1bzp6aa52jfkz94gfam8ps1h1vf"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.2.0"; sha256="0bb4pjiljjixxvz9p59knwxmwr7g0334rs58r0j9w84v1g5prgwv"; depends=[SummarizedExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="1.4.0"; sha256="0jlcgna92mrcjz95r788falyhdpbfa75z2j7dy4jxdr0kd0gjrb6"; depends=[SummarizedExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.10.0"; sha256="01h6xhap2gbwgv3jwrzzciwd697x1vy6gaxmn0jlhvryy9qw9q05"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.14.0"; sha256="1g1lgzsrnf0j5yv2hlgilij1mzbz86pl3p3vd8pbkd61pdf4gxz2"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.12.0"; sha256="0dzfxx75lnrqh2ag9x7351c8xkkfrbvz8fqnigfslgrx01ydxs9y"; depends=[]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.14.0"; sha256="10pg5vp1np7n0n7maiizgx2kskm02ikfqvz6pxlz9mglhi1vss1l"; depends=[]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.14.0"; sha256="0643h4wlqmpsygawlh9mh1f889wp79adhlx9s1cqm2b5gggpsrli"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="0.112.0"; sha256="03y637yxglvy3jxydslwl9ivdc5r8ndph7anbzrmprzp6i481gj4"; depends=[]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.14.0"; sha256="1sdmcbx3yvgwhw8kilx3xa6ip0klyvia00plv1pyfwsl6ldnymvl"; depends=[]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.14.0"; sha256="0l6nfx1b97grxgq618zvb9ymysrl52r1ahr5ivav3znsnych0gl8"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.18.0"; sha256="1bxc1qzs6jcdfh87f6mzn9d1ih790i461267czzhsm9niha4q604"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.16.0"; sha256="1r1ldji1wnfsk772c00cwmx13xms90v9diqrqjilxbam9p30wr98"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.6.0"; sha256="1j2kwczhqz26rf0ra34am32lbwp7rk13in1saf0kxd88m8qljksa"; depends=[BiocGenerics]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.16.0"; sha256="0a71k64y6yw4pxnbay478d27pfshnw96rslphvpkqaf48903b2fy"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.16.0"; sha256="088hrs6b65rxvw4d153fbk83w9p88mv5xfkwj4xziygibqy7lmpi"; depends=[AnnotationDbi]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.6.0"; sha256="030x882c38apa3n4vs9qj5a83sa8m183ifym60zqyms432k4xc70"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.0.0"; sha256="157vv89cidpcnliksfy4inds52j176724xydk0smykc6ny9wmas7"; depends=[topdownr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.16.0"; sha256="17v27ir0a38y1h73nr8nib18bj8s2l6rbz5y15ly7pp2wkp5w0cm"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.6.0"; sha256="0l86z9nryhqzdqh6vn5krlkdhanhybr86z75l7lwg07k34nm8qcb"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.0.0"; sha256="0nka5sw9gp7nv09zdi4cq10k7k400padadq80xzxfzss91nwz23l"; depends=[]; }; - waveTilingData = derive2 { name="waveTilingData"; version="1.14.0"; sha256="0ndskrk78c8596gymcffdr5mbxi1x5046w8m83baa3vrd8csn282"; depends=[]; }; - yeastCC = derive2 { name="yeastCC"; version="1.18.0"; sha256="1qm0knin24bwpjsi4g9s6vdfydrjqvv19a2kjx1k51l2j46g0rni"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.24.0"; sha256="19v901c67kp8kfb6i2hv8mczf9kcy0pvr8y4w5brjp4lj6djcvid"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.16.0"; sha256="19c4293lzrw8d8az1bzfw5ipxyrzgh8kxi3km82nqzfcnxlq0b89"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.14.0"; sha256="0f7amg423236scpzxqi2jy2w4ppa0zqwn9m4mqjksk2klig9nx3g"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.16.0"; sha256="05pi5s91wivlc1nfnsnzgx8kdibi7a3k5dgqh0a0x98wiqynin41"; depends=[]; }; - yri1kgv = derive2 { name="yri1kgv"; version="0.20.0"; sha256="0hl53rl5yhmd3yxdjd2q0wj8mlcgdckiln0dym83b1249lnhwp9z"; depends=[Biobase GGBase]; }; - yriMulti = derive2 { name="yriMulti"; version="0.8.0"; sha256="0b48phy3jndplmi9yxbd0i5bn7jqf6fpb7qlqxvzibm1q50l9yx3"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.112.0"; sha256="1zpn3d4xmzq18hji93g5br1snw0d9wmvpjmbxnmiaqwr8mrx5zbn"; depends=[]; }; + ABAData = derive2 { name="ABAData"; version="1.11.0"; sha256="0ihr0av55kfg36igb1dn5q132q4gnyaf041xqi4rw7n67525qdap"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.23.0"; sha256="1m3bx001qngwx0h64kv187q7bsxm22prfm1npbjrfzhg4vjn8rnf"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.21.0"; sha256="14pwfwndrapk1h824hw6dyxlkicxqylx56kky9zg8q0qfm5w1ygf"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.17.0"; sha256="1y6lld8ijxw2g1qxs1bzvjppwfax6yv1ww18axn9553ibjznis7b"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.1.0"; sha256="050ihbi20chjd5gvyf5jcmjhb1kvdvz80nh5aw1yp8ydfgdnqqwg"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.17.0"; sha256="1zcai5p4vgpmdv4zdnrqkdszg6wiq6ajj4vbas4hcyp5yglfby3h"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.15.0"; sha256="144wb8sniifglqdryfvpnxx7hv1v2c6djqzbk4mq4lkrp64a251n"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.19.0"; sha256="0glp22hqblylqc9n8jcx19k2p7ld9ykdnvqgr7nbipsvm4zgnkn1"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.19.0"; sha256="0nf3260aqz4831q8i83nqlcf5hq9b988ly5rhrwyb8mv2ncs0z9k"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.19.0"; sha256="05w1w7fqvhf2xi2d0d5rzigv3sriwy5jxak7j8bvmbwnx31inv5k"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.21.0"; sha256="1k1qzxakbavm10bd0ybs1gk97w1y825iqvwimn0cr128qw2xxkyj"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.9.0"; sha256="0m3pvsdd2y1947zl582791bsip95j41fc6g9gbin3cg51y7lb6xr"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.11.0"; sha256="08r5430gqsmkbh4n49ac2fl0m24zmqjnc9yxppw5mr0d4n5l26y5"; depends=[]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.19.0"; sha256="177zapqbf8ipavs1sp1gby99dbbzsyzgxyjhr258r7849b388k1v"; depends=[beadarray GEOquery limma]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.1.1"; sha256="1x1cdq226gr69wlnl543ynvwrxd7fr7znvvh6x1ka8iw357sfglf"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.19.0"; sha256="1j4q7mm4lwi3rcf0y6zj36xc6n7c8y6l8iv9ac4avbgvr1rvlxaq"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.21.0"; sha256="103lmn87zw73sx30ln6g4382ydpi97b1zsm7www8bwlnw6zx7k7g"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.1.0"; sha256="1rwnc84plgkzlz78gawjhjf4lf6gbdzgdhjp6ap49bqzgpp3c10a"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.17.0"; sha256="199xz5qwp06kr3smr25vx2w25hmzf7qbpaw18aj7bvccsdsyvky9"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.9.0"; sha256="091ydgxqldrcr3b73pqyk6555yyclnnr4yizi0kknqasx33sb802"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.17.0"; sha256="1pgfqrp6cx94marm96swqq8c9nr00xdmlf62hvmacqwspsajbnya"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.17.0"; sha256="0qd0xbc8hy25hyy8bilim2w5inhwz88rypbqc8vjlg54r2yl12nh"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="0.115.0"; sha256="0y2v5fmlfj7hzkvw1l116vnczjnmhxd77gvdqjjynl9cgvlx0smq"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.13.0"; sha256="1rjp3ybc0yx8sjqp4ahadgymlld2l2hn3dxxvpng06qpp5jch0zq"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.7.0"; sha256="0zjssdm2z7i6bcp781x9lz09dmh5krvvxg5a0la79dj5vvs72cjp"; depends=[CellMapper ExperimentHub]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.1.0"; sha256="07gyyv7bjfxa978c40lkh65m0x2zi855mapvwgpazqgq5qhxyfya"; depends=[caret]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.5.0"; sha256="0y2s4hw7hbfspy1hjsqkaw72pm26k911699k6sw4jhvjh7mkvjbf"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.19.0"; sha256="1i2aj1vxak6b53mpcd36q2xwgpddllqpqz3wii7rrsa9mg2gaaza"; depends=[affy hexbin limma qvalue statmod]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.17.0"; sha256="1zz0vq192jfnp494mp61xmkxyd94bbh9xs268jd7ynnlpjp9phsx"; depends=[]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.13.0"; sha256="131yanjrw3zsp3ly9i3s2fla7v97wdrrcajsqw38fi8nrln24qbf"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.11.0"; sha256="0hf2ijncpsjyyvdwnpfb8agsz3w6ph8ga844cdf5q18l51iyprb4"; depends=[knitr MSnbase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.21.0"; sha256="0advvjkd6skynjjnz4s9mdnh0l9l2zhn4n9x0kg23dmsg4r8vqm7"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="1.17.0"; sha256="1a669jjvkjjklbh2kxrv3y2clfps067w6w19y1yr2a8wc7crbl4a"; depends=[GenomicRanges]; }; + DREAM4 = derive2 { name="DREAM4"; version="1.17.0"; sha256="0s3y3wgg487p5fswbin4237mrm9kzbq12a84jiixhql1j2ysbhcs"; depends=[SummarizedExperiment]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.17.0"; sha256="0ahldh3d6phm20ljnyx0hz7q0zk8r3i7i39wy1arqz0rqgmgzfql"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.13.0"; sha256="1drs5gp2vh7m61wj6ypa9bpyn8igmzsql0ddyzpgp8sa99w0w7kd"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.19.0"; sha256="04gphwyic256x2wzapr9kqzq1z10yl9a2s64m4dn3bwy4613b6rv"; depends=[EBImage]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.17.0"; sha256="05xykgmiakw6n8f1b86wbyjzs9v6b7qz8119pwvbfjgncgwqmcx9"; depends=[]; }; + DvDdata = derive2 { name="DvDdata"; version="1.17.0"; sha256="0x5crrym68rw2r9nmb33j1n1f5rxpj5rzn8b5j403ikxywfwxblh"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.9.0"; sha256="1bmxm535h9ilnpbm196rf40543kh1yf5ldqxilhiyx5k0qaaihmz"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.5.5"; sha256="192jdmxl17m8s1r95c2lizh2r5zpazvx0az8xj22dva0mrazql9c"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.19.0"; sha256="0w3bcssqpbzgb03ld9j9jv57bvn8yfpkglhb4minbkqbhslv4j52"; depends=[GenomicRanges rtracklayer ShortRead]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.17.0"; sha256="0iz0f467d2wh5cly3cf2y7kkrv8pwihsccf6zsdrqpq4a1ijiml7"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.9.0"; sha256="135r3vc8rdjrhl0a6s85052mzranlxd5jkiwxbymsjg6mglsjyvh"; depends=[]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.17.0"; sha256="05kvsbr46yjpkdnn7rwxhj3wnlrgz92fgg35b8i781131vpy4lzh"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.17.0"; sha256="1rfsb49fcn127nzykwndzp7gapd36j3r01dvvhn87w6ryy9yc98c"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.19.0"; sha256="0ngh5zwikm83rzv9aykhxijf7nj345nnak2207jn4frdq8qahh3l"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="0.99.36"; sha256="1yyrcg1zzq9mv6zx9an4bpszh7r9vacwrbcpdza5ihi8w4pcfw9y"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.9.0"; sha256="1ib9g4zy3zwk7m6hl9ggi030qwrjch9jnip6d7a4b27cjzlf0sdq"; depends=[minfi]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.7.0"; sha256="04i701nl8w8sdc85z1y8gzg076n3znnd9fkp35a7pq7sczkfih90"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.17.0"; sha256="1d9xq8ha0p1injk8l16vggfkzk7xlsgaqb227gvl6xc49q8dmh5m"; depends=[minfi]; }; + FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.17.0"; sha256="1vp55zd2ifamxm248jskvf2y29cgjyx98jw41h2pbly31qxq4h49"; depends=[IRanges rtracklayer]; }; + GGdata = derive2 { name="GGdata"; version="1.19.0"; sha256="0mr6l11bgg8ncga9ivwdps6jp6zbcjs5jxvcpf834qaj92h63mrg"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="0.115.0"; sha256="1kpkn05a0r6wf1cv1q9gprgzgjaj8b2ig3apkaydjilcjykbr3vg"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.9.0"; sha256="1s28rkr5nm91vnl6cx0gifib4nw70gs8bhmv003f9kbpiq420i8k"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.17.0"; sha256="1gjc9psmx0i25bwki6l74d8jg3mrvfzjdnxs5bhbqnzab6fzdfh0"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.19.0"; sha256="0i09njrq0fzwvzj6lqsa7kdnwi35lm7z0akywh0mr87i6dlqj8sq"; depends=[GWASTools]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.9.0"; sha256="1h6ghr75h1i87lbarsganiw6mgjyiha4zv4hbjdjljc464s11b0d"; depends=[]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.1.0"; sha256="1nlalaccb5y6vsl5k63qz2mcjr6k6syciv95l18962acgnlqbpq1"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.19.0"; sha256="1z8qb5xrzadg6fxg8cx04dpad3qiab5m8vhgdqw4xs8xdaqd4g1m"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.21.0"; sha256="0pgb0r6zp6v0wq16c5zjxzjjwb6cjjp3cn8jnh4p91rwf43za4rh"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.1.0"; sha256="1a5plpx6fcdn924gpfqnw6ykqrc9m62rdkzwwgwfmzj1pl4585qn"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors SummarizedExperiment tibble]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.115.0"; sha256="0v5ks29280bybzhi5sfsrbrdajh8a29jkrr2c44ld2qchs9qhgmm"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.9.0"; sha256="1c6avjny0fasj99q0a2dm8p3h68jalcglx51b90fnyjgvqgx3h2g"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.3.0"; sha256="07fvdf6kzipa42r5dmmld7p2chbi074d248da0xmlm8lm1i0wkc9"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.7.0"; sha256="05yr2mklxwfij6yzmhpk83mlrq7zfcn8finf2m4lrvdbdzl1bkki"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.115.0"; sha256="1498q13fd190cnn6rh1m796zpalfwxfw275r33k8dnjfqiw5c4mc"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.17.0"; sha256="0hjhlq7vx71lwv37vidwlb819hm617dx7g39hgf20ggccmp310rh"; depends=[]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.17.0"; sha256="17mnwnpsam62mc8bqdwjfh9fiayasbkx1gd3bbp0k82w3az9yzbf"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.7.0"; sha256="02hp2a7h0ivzdfql3vsrvxrn4answlr7hrhw5azdjw8jh895dd1j"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.9.2"; sha256="1ah85aim6mfjiv08pxr11d9x84ymki2kvnncx1iidkqd81h97ifk"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.19.0"; sha256="0i09g3dj3rz0yr4n35g9fhc5df957i928vbinsx2bl3jsj7xrf6f"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.17.0"; sha256="1y219yqipskv3mzf7g75rmzwsp5sq2r9cqacbpyc2gk28z6dfnix"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.19.0"; sha256="0b6zhvkhpjhz9wr3cfcvyy16l1kvd6aq9p58y78ql9rgpbhz7dcz"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.23.0"; sha256="0986lrh1w5c1y3rlc0rx06046h0nw8cdqp1mbsddllpibnbj4ii3"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.17.0"; sha256="13hrxj4q2r9bdzwnl0qm5ap92051483876rwq73bz6hy5xg73abx"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.9.0"; sha256="1gx14sjv9v5705h1763p5js37jrvvlkiqdm7nrawjs4n6y4cpsdf"; depends=[]; }; + JctSeqData = derive2 { name="JctSeqData"; version="1.11.0"; sha256="1zrnmvs1mmg07s5fi8m5yqb975kb1nkx98j0shpk9xi5jdbf7x0d"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.115.0"; sha256="1y7nnqxaqv9khgy58wq4mflgl0nmk589bcc76chjx7cijq88v09r"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.19.0"; sha256="0w2a3yjp5xhbxq0vhzyka8sx17a095ddnpm4jhac65s6zmndgqr3"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.7.0"; sha256="0grvn2pc38zv133v60hvjh1jx9dsbrwxrz9c6fb977z1rznrkzz8"; depends=[]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.19.0"; sha256="1i6rl8mziv8apxxa2hlmsg6ramq4aasbg9nxj963lsk9b6gnrzlf"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.13.0"; sha256="1p3f67zdihy5prbgqm27bdpnz3gmag3jnya0y7gxaqn3lkdd1vns"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.17.0"; sha256="0rgbx36c4hdjc67jsmhrbzyhk3ib8vgmif2g131rly2057zs43f2"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.19.0"; sha256="11yycm8l0ykkb22h9rppaqrkvyyphz7q8k5zgha06c4h0lcf9zqi"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.7.0"; sha256="0iaaxz3k7kw2qfaq5c7nx8jbyy4lg3csvsgnci7aknm4iqdgzc7v"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.19.0"; sha256="1c9gng9mr56h0pqc6xsr489d8m6xixg1iyw6ivdjdm38yg9l5q8h"; depends=[affy Biobase lumi]; }; + MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.19.0"; sha256="1901vmaq8k8ip508w3s37bdvrhzbd1f36zgz4z7i2f93464yh188"; depends=[affy Biobase]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.19.0"; sha256="1qknpl7k22rbn3v5m4jqs0xiiw2n8wz32qbqsdy13300ynwlvvkn"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.17.0"; sha256="0pazyx7xsvxsv36yhhxjbiyfdmd19ifrbbbfj685hgdx0mpiz8qa"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.19.0"; sha256="1naapb5mskfr482lfs5z1ya2bbsz3jwcpm3mm15dhrxl7rrd7z98"; depends=[]; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.5.0"; sha256="15v3gva9xprr24fv3p49lvwgnh56g9x3nj2qqdd410i1avwn6j8n"; depends=[]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.17.0"; sha256="1bjkdyf0knkdbzdmlas81dhnm5k7yslq6km3yzffrvn1kssml47i"; depends=[]; }; + MSBdata = derive2 { name="MSBdata"; version="0.99.1"; sha256="1bgzzrynb4066xps7wagawb2pjd64qab7n9il2znsidfprm03bxj"; depends=[]; }; + MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.3.0"; sha256="10i3gg9fbhcj6fz4fz1jzmqmabdf9c39ys8yp40qs60glv9gj3qa"; depends=[]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.115.0"; sha256="1ls2rhjx9ksdlz28dw3rm59rh6k17xyilda92ib48p7898njgf1c"; depends=[]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.1.0"; sha256="03k4ddgjvrpgg9xikjhy1ayampr8v18ncm57jpnn9wrijvyinpfj"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.1.0"; sha256="0d7kpm9cqxkwnnickk0hcc2y0x4ah3mh8ajpdrhrylvffbmx4r38"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.1.0"; sha256="0mpspppz8bmq90aq9jvvqs5700n0dkiqcd5pdrsija8ycp2gbxc9"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.13.0"; sha256="157qvzvw8hhw25qnzv7xax3vzmq38bw4fp0k34jfwgq944srv0h5"; depends=[MethylAid]; }; + Mulder2012 = derive2 { name="Mulder2012"; version="0.21.0"; sha256="10mciqb0vh32hx1590r99zyr0pbx84hrssdpjz6i8g9hzlp69wvm"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.17.0"; sha256="090s04iwbnhdbgprcy15hl596vmgq8x97v34w2xvmsdld5b8z58d"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="0.115.0"; sha256="1l949sqfywpa5rqxh8h6wq5i8cqmf9ly1ghcrb0gmxv2rcazbn87"; depends=[]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.19.0"; sha256="0fn77ic133wfdjrnh5vdk95rwx51nigfmznb7i94n8h5hddmpnbc"; depends=[annotate Biobase hgu133a_db]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.3.0"; sha256="0ih472qrzx183pyk0k8agwybn5bycx3hx1j2amjkp42p7hml4iqj"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.9.0"; sha256="19cmbyhsi84pi89fy623f7r5yld7qifnqfpvwcb3n7ads5idq1qm"; depends=[Chicago]; }; + PGPC = derive2 { name="PGPC"; version="1.9.0"; sha256="10z8r98lp92dh14wpf2hs5n3jzw9y3dw6mf5ssx469368hhaypma"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.21.0"; sha256="1h7x57vvplxbmsxwalgnkbxwnl91qnfyrn1j6cwyak9pzh58aqh0"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.15.0"; sha256="1gq65gl4dkas9nl3k31k7xjwdry5c2bgj841w1llbb48wy9w06d8"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.15.0"; sha256="1ryrrw0fdi7bmw8h7pdi02yq9y39dkl0vppyf4ycasnbyn14ddrv"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.15.0"; sha256="1py3rsnd4s9x7r2mhzsp7hqaflg3ip2fgq3cf10f136fdrfcbf1k"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.9.0"; sha256="1lkqz0kp1jfsi1bvkqhvlqapp658qfm7b1p9kiwk9qakfl0nm7x6"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.17.0"; sha256="02wdp23y583p9sinhaqkv6lxp836m6kh7na8b2wv6qajanibzhl1"; depends=[]; }; + ProData = derive2 { name="ProData"; version="1.19.0"; sha256="0idv9icfzr52k96gij5mlyqyd48mjwka7jg1nhawiaj7g4c005yc"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.7.0"; sha256="1dql2jfvsqn2r1cq1bfg7nfs7gimim6jgsvz7b9pqk1zdh02jhkm"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.11.0"; sha256="134mzg2r3bpzcpag5vf2fq8g0xczb5qxyvqqcjzqw654mbafgczr"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.11.0"; sha256="1j5qzwbc7a9h9hlda6c6f53pm6vqm4kdja4z144j4snyac88xclm"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.9.0"; sha256="1r1wcmd7s17gm5q682siy8ld65w6ylch9jamqjlbp8qiqqvfmzdd"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.1.0"; sha256="0ijyjgqnap1zmfh6jf4gz9xjiwyzzhyyghvydh6rwkyys46ci8zl"; depends=[]; }; + RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.17.0"; sha256="11hrk3cf86jgc7vf14wlyarar2vsnjs0i9wyzvmk76draq9frg30"; depends=[RIPSeeker]; }; + RITANdata = derive2 { name="RITANdata"; version="1.5.0"; sha256="0yn8nfvni9h4k9ngzccsqgbjrjvql5gp3haqyg9x334sjsi212c8"; depends=[]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.19.0"; sha256="172x6x7fnzjczi76ibmscbb51l8185lqgiypyyvlisp145mxssdn"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.19.0"; sha256="01sf7pbcsibdm5dhh9zv2gg2g58z6vswhdz227qfd6cvbpnpqr7b"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.19.0"; sha256="0z1b986jvinzh3c1yl9q8wa66wgq8hp8rjbs23glxna77znvkp87"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="0.115.0"; sha256="0i33fm60lcjczzc4xx6y1gg5jsxlq0v9bz46hym7aq59zlpbqh6p"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.9.0"; sha256="0an39dgcapfn7i5h1inbjihl224l945g0rax5h33bmpnzlry1a8a"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.9.0"; sha256="1lh2ij6x796rn39j1awn461jc0snswp14x6z338gqz58dahjfr1x"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.9.0"; sha256="0micdaglaqfbg2pg9b0jpnvfi91adms8lg7sq7k9srgyjx2dsdid"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.11.0"; sha256="1y63vnj59sv73zcrnwqd4ikdjx45y9sqb2pj1lnsrhvfbmjazi5z"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.9.0"; sha256="094yh17af0x4zb97dcmrfxqviylqmr3zii3jya6iwwr2jay5a8wh"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.9.0"; sha256="0m3i7srvdjjkynnizh7jq8d70rm7cq0wi6182iafdgyaxip2qxgk"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.9.0"; sha256="1nw57daaf3z5k2m52rw72ncxj68bkjmpq158z59v8zm5cpm8z33f"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.11.0"; sha256="1wyiz22rw400hiqqnw41mqpvy8bbj1vxwx3v4vnz6x81drv2sc1n"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.11.0"; sha256="0z2k651pd0m9lxl3n62xf41xhk65n33cgf7d5zfwd03hbc07d0gq"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.115.0"; sha256="0vyy1sarkb64vjq1c3mrd0d04hnfy4aigi7zgvaniv31ab6hpb05"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.1.1"; sha256="08p1r5vpz92i7nmgdjsp0i5wzypb46lsdnlykci21nzf9ip12mc9"; depends=[data_table]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.19.1"; sha256="1dy4d1wyf8ifdhy8psy533yy8liwgb26gbwqv1rdzjxgzai8f3jr"; depends=[AnnotationDbi Biobase BiocInstaller biocViews DT interactiveDisplay MSnbase R_utils rpx shiny]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.13.0"; sha256="1p3b97f8kmilpwgf61p4kwkizdn8a07ai9a2x3hy4igzw21fcgz5"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.13.0"; sha256="1wyy4m3p40i12hlwvz9ixqps8i4d5703gl0pcgl4i2485d78yv9v"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.13.0"; sha256="1kjvy1v0dbdm959cmsf2d5mnrbnisjpff12wl5gn44n2cg7bb65g"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.13.0"; sha256="1s1iy8x1x53ny1pyfgwwkiwc3jpjhdkcd9vpwyv2ix5g22jf8ag7"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.13.0"; sha256="1pp9y94rdk5wwapc4jbvs35x1z2agv4xvzxy3fl3h7hp22gaqr9p"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.13.1"; sha256="1cqannbgpr0s9qr1cx4d23rwjy6k63x25khdr7qx5939chz0r21a"; depends=[edgeR]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.13.0"; sha256="1ynibzjlyfscg5b1lxa5nvfznp106vb4h7ia6n847h3n5s6ndasv"; depends=[]; }; + SNAData = derive2 { name="SNAData"; version="1.27.0"; sha256="182pramjd14g1p0aawcjrv51xlyqkp9mhm84v3gnd9gnmkb69b31"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.17.0"; sha256="15l23gw5ckxgr6pscl07jqwb1lz58g5893wnlzz4zpk3sd46d2p6"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.11.0"; sha256="1zm0zhf2987hls15b47jv6krn1cc8kp6jm64k4wqhp4dsjxwbaqd"; depends=[]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.13.0"; sha256="0qhkhnxrcy5i7cs4cl5axc8y9dbzhzfl00c17qp9r4bf8292xf1d"; depends=[]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.9.0"; sha256="1xnsilyjls3s048kl1jwqcs6sb4r33khga0z2zipsgk6aqnx81cc"; depends=[]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.19.0"; sha256="0aj84aljp7ih849qnyhmsibnsvg7cshj7xah67xhn5grzwk7v9hi"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.17.0"; sha256="0bprp4cddjf9zlhv38q5y08zrzizqaxj4338wbzjq1ypnjyip2qj"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.23.0"; sha256="1yjlljcy1wnxkxrcxaw26f96vkyvhqh9zq52l9s8d7gnrsfj44ak"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.21.0"; sha256="1z6fbq2z2ry2v3sv48n20c07bi96gb1nfg81g5ylh4q7w79g8lvf"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.17.0"; sha256="15521vpi6h1ydl8vw43h0plrgy7baj5bprzg8rs50yxgkphh9nns"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.17.0"; sha256="090y4vyipnlxxg78yxva7q5y81gawfpmkgjrsqiqr1smfalvx9yw"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.5.0"; sha256="0kbab7fjy7waq5r6k2w0c8x811xd62v39p17acd5gk8gbw9gy919"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.1.0"; sha256="0l65f933xxngfm6z5576disj60xasm386x8balsrymcvjkpksr7q"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.115.0"; sha256="1bmn0r5bx2vc4cpv48mbhr57gpidr42mgaxliwmkyj0dqbjnzmqd"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.115.0"; sha256="1n7qq2gc3mcfh4c1y2myrb1pj6bq8l7m7nwhlk0ps90zlj064isp"; depends=[Biobase]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.1.0"; sha256="032z307qh7idxkzqc8b5gngysmw8iy1s3z1r8747n495dy85ippz"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.17.0"; sha256="12bmw3qmkw9blmr5ikgx0qyfv1x6hda8d41fiy8gsb74fa4nifsv"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.19.0"; sha256="024av13qimrl55dwkw46rfx9gr6kdghnf1n5qcr4q7h5i9frdfxg"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.11.0"; sha256="1a49jaxgjhwl756a7wijswa90z03fz61ffp6w5h00v9qfzgnyf79"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.5.0"; sha256="1kkz3zvba4mc237pxwj6z0c2jvbrgfaz3n5vm55bz6j47aas3i4j"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.13.0"; sha256="0f3llqwkc5d4av47871d45lfqghmncww9g5rgf58pydrnw7n93xv"; depends=[]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.19.0"; sha256="1kac43fvng1pwa8hlbivd8pxan7agp9csp0nmh062x4kwamny3hm"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + affycompData = derive2 { name="affycompData"; version="1.19.0"; sha256="14ss2b854dj36rzhx1z854r5hkxy0yqzlm5k0690gn5bwlah6rk6"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.29.0"; sha256="0sv5q59xfvlyk97ihki5sqdzy9nldjccxiscx3ii1xpp4xk44i3c"; depends=[affy]; }; + airway = derive2 { name="airway"; version="0.115.0"; sha256="1h823q96za4jrzf680bp651blh5giqwx660nhp7xhl3drxpzf1ir"; depends=[SummarizedExperiment]; }; + allenpvc = derive2 { name="allenpvc"; version="0.99.1"; sha256="1g0bk3v2gmhr2ck4kdc2pb6xj8abk9kgk0h5f0hdfbaxjdrhwpx3"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.7.0"; sha256="18llr6pssxmrvw3qzxw4f77bpv8g3akz3kbsn9xsdsij364q33am"; depends=[AnnotationHub ExperimentHub]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.17.0"; sha256="0wyjfc02wm5x5d61fs6cs7g3s0j4aibpqkdiwx0d8cbbkl38ih3f"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.7.0"; sha256="1acngnqvg7vl402yfcw65rqs27a7sncl1xfz2893abfli2ccpbzx"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.17.0"; sha256="0rzzj4pla57z9825jcs2kx177xrcqfnh7jai41m8dwfxln6ccz25"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.19.0"; sha256="13g7p6jrg9qa43zv8nhkgfz2pq7b3v6chgqmydyyz25q6jy28iqp"; depends=[beadarray Biobase]; }; + beta7 = derive2 { name="beta7"; version="1.19.0"; sha256="1gd1l8rh73k27sm1cjfy9rmsplrkji3zhzrzcldjmaaixl5nfjql"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.5.0"; sha256="0ccx398761qdnnsrjwrrg6qjrq01fv88999f2llyq9gpd3f43lgs"; depends=[]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.19.0"; sha256="0n9vwbj8cii67rhxvb1ps72k99rv251zcdr4w3r1jkbvcd61nvh0"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="0.115.0"; sha256="1hzmwjmyi6qnkqnq2x6ml8yvzn1sr33lwc6nhz2k2mx6s2l4ajbb"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.19.0"; sha256="0pn48n81vx2wq425q5wnga6n32apgajk0bwq78ri983plh7ik2b1"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.19.0"; sha256="0b6z16m6kqkd8rfrdvjp6p4fbqs78s25fbiswnw0k8jzvz5yw5x7"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.19.0"; sha256="0slagz3x2q1qykvjcfnh7k3ggpn2g34j4iqvnv7j3mdcc085hn1d"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.19.0"; sha256="0470r0i59phz2rcnmi0sb2hvw87nvm5dq6s4dj6s6z5mn85g8hd4"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.19.0"; sha256="0qgz0dsds0xd8d6assqd0715zfyk2y92251m3zq108ndqh5gn4bm"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.19.0"; sha256="0ma62g72md7is365pbnqbdskacxqvvcnc65jzv8b7g1dwvayswp6"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.3.0"; sha256="0w9h12ns984h6k5zhz2x9ria4fa1wxp3k04f6qg5k1zw20v4q2d6"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.19.0"; sha256="1jg9jz03ab3fki6g293c0jclk8cfpj9qb6yzzskdpcz99xmhs2xv"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.19.1"; sha256="0gqwyx0l0xmd2aa46shq4kr11nfi1imj2pwfjc9026r47af5b84h"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.17.0"; sha256="11973w3gjz0qayxacx41mlbf4ji345js8jgjkn2aba0ahnyzb6vw"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.19.0"; sha256="02zi60lh6jsg6hlyyq6wzg9lzxjr8m9418kywlk3x3c6kkgkrh69"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.19.0"; sha256="0xd3zrcia312h947nvah3ksx9kxzhqzc9c2nm5q6ssvx15s6f6d6"; depends=[affy Biobase Ringo topGO]; }; + ceu1kg = derive2 { name="ceu1kg"; version="0.19.0"; sha256="0vs60mflfc1pnc7s725wsyq2jrj44jrvxwzpw4bhlj0qbs602s8l"; depends=[Biobase GGBase GGtools]; }; + ceu1kgv = derive2 { name="ceu1kgv"; version="0.23.0"; sha256="10jnbc8y386racq3ac1hf1dp76wvzlfm8p66c94pk3f2m0w45psv"; depends=[Biobase GGBase]; }; + ceuhm3 = derive2 { name="ceuhm3"; version="0.19.0"; sha256="1qdp85ps5xrlx1pl769j91aig2rgxcix4pdzrsa249nyyq1avdym"; depends=[Biobase GGBase GGtools]; }; + cgdv17 = derive2 { name="cgdv17"; version="0.19.0"; sha256="1n67nx1har6mswv5p2cb1xfrawkkhzrzxy7fpc6091yy3ypw1s5w"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; }; + charmData = derive2 { name="charmData"; version="1.17.0"; sha256="0hgac6z9k3frw648479jf8m6n2wlljhln7n8y13lbsdv5wakln87"; depends=[charm pd_charm_hg18_example]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.5.0"; sha256="0j9zdc0xrxi7vjyl3dzkvr8g24cxc1kcvw52vplrd5njyyka5vw1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.7.0"; sha256="0arxcqr1yrs00i7a8xncprixzm8lc8ljrbh371ckjdr7641g63gq"; depends=[]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.17.0"; sha256="1inxvj6sfl7n3cxzswkllbjbjwz0rm803hkycy4wxcsq7416sj21"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.23.0"; sha256="1mm0zb003izia6j502n4m91vad6iz3ymf8nn4f9wlj20di66fvx6"; depends=[Biobase]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.17.0"; sha256="14xwq55g83pvwyxm7kl6hq9c4j2bd6vp63afir619d5binl6i7ln"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.9.0"; sha256="024sx3am50vsaaixmj8gfp3f905rf7g7qyn47sdakpv6sx48k1zl"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.13.0"; sha256="1f6m6sllbxzca27lwyvav2d4si65w7fs9mh4mksw2sn8n8x5452v"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.11.1"; sha256="1gdnp5m8d3lz88hvsm3j2jq9w1di14ifls5l9q51jxm045yg0yjj"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.19.0"; sha256="0yvc1kpy4ql2sd467dggi6kpwxrvvqyasr0mgc61s1snmakvm06y"; depends=[affy BiocGenerics]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.3.3"; sha256="0khdg080c5ivirh84w1w6pvl9g4yi8i8f4sl82q3a2nwldqswghz"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; }; + davidTiling = derive2 { name="davidTiling"; version="1.21.0"; sha256="18ivz1z0il8s9sk6c5mzgipsbs8xswbq7swwm422ji1yp75lkd9p"; depends=[Biobase GO_db tilingArray]; }; + derfinderData = derive2 { name="derfinderData"; version="0.115.0"; sha256="1xvvcbsbmrkri2nl7g1wpbbsa7wn49dj85xwxbsf8yffmisxb09k"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.9.0"; sha256="12a5338djyhg94q7wdahij4c9dnrx5qx04a1g9304wpk5z6cmxni"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.13.0"; sha256="09b1mk68mg3jqf63c54xdh805vd79hbnnh02rf6qb3pq6w9b6z64"; depends=[Biobase viper]; }; + dressCheck = derive2 { name="dressCheck"; version="0.19.0"; sha256="0k3h5i86345xx0d31qim1d1aw25axwy48hiq717fbnz2mpwsggj7"; depends=[Biobase]; }; + dsQTL = derive2 { name="dsQTL"; version="0.19.0"; sha256="0lwgnkvzpipqnzfh3vlqgk568ys1bqjyfih97c7vb8mn57i100fz"; depends=[Biobase GGBase SummarizedExperiment]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.21.0"; sha256="0k99wgjm4a7mjs76p48mwfp2y17xn4r2bral2c1hbyj2y4bl1ycz"; depends=[GEOquery marray]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.21.0"; sha256="1pbindvfhr7lf01r0kncp23f6jxlwmkd362mix2gw2g006a83y4f"; depends=[affy ecolicdf]; }; + estrogen = derive2 { name="estrogen"; version="1.27.0"; sha256="1m0q2k6p6ydp7ykqwi9a079knxmp14xlrpcwncklsapibcvyz8lr"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.9.0"; sha256="0ljn90gf4sm7615xw25dil15kgf81gl0hvbp24snx4nbflnhns4q"; depends=[Biobase metagenomeSeq]; }; + faahKO = derive2 { name="faahKO"; version="1.21.0"; sha256="19dxcf3yfgy8h8xn76h7x2ihvgy90923a28j3b2k972r84zzy7gk"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.19.0"; sha256="104c70pp9cnkx3y2mm6yxj4vj6k2mqrhw1n2cibhxnnqnl2lnwnr"; depends=[Biobase]; }; + facopy_annot = derive2 { name="facopy.annot"; version="0.115.0"; sha256="0aribb9b0rjd2xlxchbsjq3darg6klhsc8ajpa34m0rldkp3nzrl"; depends=[]; }; + facsDorit = derive2 { name="facsDorit"; version="1.23.0"; sha256="0xxdz1xfb661pnrqji6vxsmmr90h1v1i195k9gb4dll6hwbq0n11"; depends=[prada]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.19.0"; sha256="0jjaj492k4akc30yvr4q8y31wdi152iq5s3pl5i10sl9xrbg80hj"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.23.0"; sha256="1g22av8zj4nq9prnps7zgrzvva9d5a6h016llg0brpf9qjpg58p3"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="0.115.0"; sha256="1wx3ama4pdklyrjb54ww69ig554iv2c7j568zpxdywclg38z6pms"; depends=[SummarizedExperiment]; }; + flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.17.0"; sha256="1ahg5g9ypxbhm7jrsbq1hjk5r5fmgvirawfd2xqfiaw5x9pkmrai"; depends=[flowCore]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.7.0"; sha256="0f3cnq2s215a6wrz2cbp90219smvhr4zsvl02wbd40xb8902zhdc"; depends=[]; }; + flowQBData = derive2 { name="flowQBData"; version="1.7.0"; sha256="1xla98i06j1qi2w88x1v8agvqcljzwxfcxakw0fl6phwl07hz9na"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.17.0"; sha256="058q46w84jd7rf50pn26fiyh1n312jvxbcdrm5i2mmzg358hrr6y"; depends=[]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.17.0"; sha256="10lr219ghj409himn3g080s5saln3k355x9jhrk9fx69r8g127d7"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.9.0"; sha256="1a4gwrbqliz3cwn9iqwsn27qhmq9l3rh9k59ca94vsjmkrqx7bjk"; depends=[abind dplyr EBImage locfit tiff]; }; + gageData = derive2 { name="gageData"; version="2.19.0"; sha256="1zrps414095nkc49f90a7f8zy224ll60dm6b46sfkajd35bprafj"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.19.0"; sha256="0alxcrnk8kyjrs73idgihwvz42hbn4d6laayl849rzcna1fp48sp"; depends=[Biobase]; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.21.0"; sha256="16gwgign7bq4yccq36wav2w8xl193c6aca6bgh9l8fv0z0rdgxnv"; depends=[]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.19.0"; sha256="197lx2a6jlsrv5bg3ih28maikyb8jk91krifk80xys3yfhp9dhyb"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.17.0"; sha256="0qxdhn5is2d47iv01z7in8gd3s2dzrgir8s8j4611f7sgy9s9px4"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.13.0"; sha256="02fq74q6vkraivdrka8l0hascvsxg2ys6p40774vjhrhrcvmnfkm"; depends=[]; }; + geuvPack = derive2 { name="geuvPack"; version="1.13.0"; sha256="07h53q19zg89rvzjk3aqgp52gynlxg5frxm5h2q3q5ihidp118cr"; depends=[SummarizedExperiment]; }; + geuvStore2 = derive2 { name="geuvStore2"; version="1.11.0"; sha256="1ggac70x9pblbnzm6wg6rpmbgrkf802b2vgnfah1516grx0dwrkd"; depends=[BatchJobs GenomicRanges gQTLBase]; }; + golubEsets = derive2 { name="golubEsets"; version="1.23.0"; sha256="1h45rwz6z4wgibbyafv8946vfs303km7ixcradml4ymbpwibp4ib"; depends=[Biobase]; }; + grndata = derive2 { name="grndata"; version="1.13.0"; sha256="1ybgk5nf9nqrmw4mchpf183zyik6szzsm2cxh619fv27f0i3hjzk"; depends=[]; }; + gskb = derive2 { name="gskb"; version="1.13.0"; sha256="0gac903pldny2p1fv3rhxr9v24iznnrz17xhdd8z01rsy0yvxdql"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="1.115.0"; sha256="0viw7na4wqscaj0vijharvdj8mvwm0mxw0b2gm3slb9crkmksra7"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.23.0"; sha256="07r1nsl92awkkw41midkb9iv4c93my7c222li2f4mym8hn4ahn8p"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.23.0"; sha256="0dvb3b2ls7g66vsv9qzl29kkjmdd6mwrhqxzj0a1d7qnkg48kgy1"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.23.0"; sha256="0jqyvd1khz84l1qw31xk2szb9ycsp76yrs1h81ahg64sslygnfg0"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.23.0"; sha256="128p97qmp7br5vwmn934akkh0h4xgirpzc4q7kaxh3w211rch7rm"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.23.0"; sha256="0a1n93nin8hpqh0qswbl9phlwgllam0xxpa2qxr63dyd5k1liwz6"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.23.0"; sha256="1m17r4va3vbiml0avlb7xp2qhh82vig934h3gpmz9190hy6ikds4"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.19.0"; sha256="1566kxfblk6z4dia4f3gl3v0dsz8lx343nlflbp2wfb6gd314dl6"; depends=[Biobase Biostrings IRanges]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.19.0"; sha256="052kvg8gvfbqc4fpr8np1q9li7f52daq1rndpg7zmc5zn4nqjzrn"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.19.0"; sha256="1c113f0aj51mdvdizi6m2wmm0v7zxsa3pkp3bjq2426v449qr3ls"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.1.0"; sha256="05y00zzwflkkqblf811k5pxdcc9ivmvv9znlvsa232dkk4f1fnvy"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.19.0"; sha256="005llh7vpfc01qbq1wnq1nribqgh1kj7mw0rz59dsmr92czm7lbi"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.21.0"; sha256="1d80nxbf8ffmh7ipvxw2smvhgq4xvjhnhmwpwmkwn30yghrm46wj"; depends=[]; }; + hmyriB36 = derive2 { name="hmyriB36"; version="1.17.0"; sha256="1s1gsysv8wsk9fzd34fjw2rp6jk8nysg1wd6dhay5mqphv92abkh"; depends=[Biobase GGBase]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.21.0"; sha256="02y71ydwlygn6yickjx3gjsmrhp6dnvqk5319is70gwd214466r1"; depends=[Biobase hgu133plus2_db]; }; + iontreeData = derive2 { name="iontreeData"; version="1.17.1"; sha256="171gx10sfmpvwlv8ww5ckgc71y10lips3ws6v566amsdysafy82y"; depends=[]; }; + kidpack = derive2 { name="kidpack"; version="1.23.0"; sha256="1ib24nbvqgids10k1glvpswavnv0qd14nvx9bw13bk09vndagkyi"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.17.0"; sha256="1mldlpdpnivfi60rnsbz7466jf9ssyfgb2xv9ipwc8nlmszd6g45"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.17.0"; sha256="15c31vzfn83pfjj8bmvg4sl0hynlvaz2wcg3fzlxmlpbf6b5rqd7"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.21.0"; sha256="043w39jdc35pgblprh2p4crpxcix39ya9kg3g4q8dcajasr13dag"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.19.0"; sha256="1rbbkjv3vjrk6d22k7msnq124y47a8pb4vdf388f1a8j9403jfpi"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.7.0"; sha256="0lq17l0klsn081m2nd9hrx50nxksvf7186drby66qvq6bhw3vhms"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.13.0"; sha256="1h4x00a7rziqm3cqkddpp7ahrb36045yq71lskdjyp43k066jplw"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.1.0"; sha256="0rcfyk6mwlxgkk7q40djbcbd4kx4vyy79h6dxb37zd7mpzxj03nx"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.17.0"; sha256="0gfhiz8wqdxx56an3yp5jagsr7bx131lia86yycvhyaylsj0pv7i"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.25.0"; sha256="14m82492wb7jmqwjllnqak9rivyky1prcqgp1yn0g05c406fj0r9"; depends=[]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.17.0"; sha256="0j6h0s75w50jp3lcfs5cilqaqhhinlfn9c6zlpki6906fj1q6dxx"; depends=[]; }; + methyvimData = derive2 { name="methyvimData"; version="1.3.0"; sha256="0jacj9jyqs5x11xds6bindab6q96br95r37dxmgxw5gxl9lcn6ql"; depends=[minfi]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.19.0"; sha256="05x4vl8x2brm3bj04kddzcqjnm72jw29prmcwr1ildbaadmzh3fg"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.11.0"; sha256="1qgzplmv16anh7c760nf51fh671z0lmxqmkn0qfmj55d54gfgfmh"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.3.0"; sha256="0hbs64bhd129cq098y5ijf6q2nvn2w382d29isws92q1ln12r36b"; depends=[SummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.27.0"; sha256="1h7mb52p73bw66rxwjjfmaan6scs9pc6rj2f9wb5hx9hddwz5xy4"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.7.0"; sha256="119sr9yb82dlcjgddlqwzgn72c7zghz26kzdda48s9zxlf31f9yp"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.11.0"; sha256="1i5ilakb9a4w7zf4zwymmpxyqn8s4y7295gdw2spgafgny0ayvag"; depends=[]; }; + mitoODEdata = derive2 { name="mitoODEdata"; version="1.17.0"; sha256="1pabl518xj88hlpfdqsbg2178ac2in11ma3y0syvq7wr2nqdqj6s"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.19.0"; sha256="17xvlaxlw6jn7w81dyg74n84nny6apaxv8b7qbv7gcyil3h2xr7f"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.19.0"; sha256="1y7vkiqp4mkf16mpl5yl1jzmh1fv67d6k4i8qfi1lm68q2av9ggv"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.9.0"; sha256="0z7gs75bci301mhhp9j8lxpivjns2bmr51vsz04d4k308j19w1wv"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="0.115.0"; sha256="1gspbva55x3bz2xzgdm9yfif0rgbd9gz9alswh1cy1kj99b0qk54"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.21.0"; sha256="1srm1djnzfrj6klzxm2s721glk75lakb2428arqn3bm8vzvqw5vy"; depends=[]; }; + msqc1 = derive2 { name="msqc1"; version="1.9.0"; sha256="0qdn1n6nisabv1iq8xqv3h14vyjwpc8576gl88km0kfd6pwwyij2"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.11.0"; sha256="1ismd5yp3vgj1cqp4y92gy5z856bs6sy3fgbigjjba2rrb3m4k1z"; depends=[]; }; + mvoutData = derive2 { name="mvoutData"; version="1.17.0"; sha256="13kakn04xrngx9m80m1gqwdx3f75qixy6h9y0jvh16jk49kdnxcd"; depends=[affy Biobase lumi]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.19.1"; sha256="1bh5qq8q0ar380nbci4y2bij19imgb5b7q5yf71mmlsxbk3284fz"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.19.0"; sha256="1dmnm348yxa9p6lnia4iiil1s4jkxj1n83frhml06brnqymbb9wn"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.9.0"; sha256="09rzh3w8nki9gqsk3pznk867ipg7s7imz7ma67cl0rh8pz2vg05i"; depends=[]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.19.0"; sha256="0d2b4qav1m0whr7gwn2h2962qd72i3fc0y9c36k6nxr7jyfmv1jj"; depends=[]; }; + pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.11.0"; sha256="1s5nilgzs1kgdjaqyq7warfg672qvd14m61bdvl0g12bkab61sv8"; depends=[]; }; + pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.17.0"; sha256="0wwd5cc8ywi5181q8hrxw6jx6pxyrfayfdpw7jzp3nkj8x222d31"; depends=[]; }; + pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.17.0"; sha256="0g5y5nsi99dsx6n1zfjlc6vi4ikmv2l1ba6sbdid9019k79v4495"; depends=[]; }; + pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.17.0"; sha256="1qz6saflpsa9naj536k7ciqks95hb6l1z2v6srclqq7b45465h1b"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.3.0"; sha256="1whw0wrfq1dfbxpfcz9z749dh27fadxmwp3dln945qh0nrjli6zc"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.19.0"; sha256="1rfp34332p0fbx9yfb87rlhwwzjy1pm3zf372pvhv1r7qm8w3dyh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="0.115.0"; sha256="0rzwyq7aj3rf6sghybsn27vimlqv8z78bq5xs5jibjvwy697xczn"; depends=[GenomicRanges]; }; + plasFIA = derive2 { name="plasFIA"; version="1.9.0"; sha256="0ivyvrx2wmr9wsi852h3fdkbc8qrxhx1gf21aiazlygz3x796fml"; depends=[proFIA]; }; + ppiData = derive2 { name="ppiData"; version="0.19.0"; sha256="0hglfcyzlz7j090qylilqxx9jhivk3ipkq6q0zn2grydrj0g0xib"; depends=[AnnotationDbi graph]; }; + prebsdata = derive2 { name="prebsdata"; version="1.17.0"; sha256="1jccx76j7xqbl4660f0akh6bnvhcvpn1wkn2hchbv9w1s9ywy9pi"; depends=[]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.9.0"; sha256="0wqm9wbqz15ls55mzvd6kfssix02pn2qaymin6s0b6w2imji85np"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.9.0"; sha256="19r3gb718gll5fx03q1q0471r7fx25iix7ncff6v54pp4lvnjk9q"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.9.0"; sha256="1y9pzi3w2k3fj6lnmlhzh5dvazb7vkqvchm1a6fi3lj3wdqv12lw"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.9.0"; sha256="0pclqc7qzypwd4jvld3dmy43fc5hram1lzcfbdnp4vj8r86mw7il"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.9.0"; sha256="02vg37vllda3yvw6lq7xggil6l3n7v4y37s2cqixqrrmnczzqb2z"; depends=[Biobase]; }; + pumadata = derive2 { name="pumadata"; version="2.17.0"; sha256="0ag7kv1k9jaj943l0szxlk2qfx5mlpspwsrnnyxxcpi3s8r8nyn4"; depends=[affy Biobase oligo puma]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="0.99.1"; sha256="05v19rlbskvy15504ys8x3s2hhbdzwnyz3dwjas6h0b7rs3d51p7"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="0.115.0"; sha256="1z334hpwrl3f23r7cyr6zr7niwmccmxpwzhydgwlimvkdg8yn2gv"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.3.0"; sha256="1qms5v7jpvncdkllcan0xnqxhbxsh3kij4hcin8m4xd470vnf0xs"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.3.0"; sha256="01vbzdx354qpl58lznn9938jn93rf9nikwjfmy1w33z5cmirc7ad"; depends=[ExperimentHub SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.19.0"; sha256="1bcn3s36w3asb2di8851wg67dpx3rwalw9php1sklzrbh2f7jazs"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.5.0"; sha256="06p4cq30diwx5flxc31lw3k6z66y6villf99qq99f4ab5x3gad94"; depends=[SummarizedExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="1.7.0"; sha256="15cxr52qakxhsbjnm8vl33qlwbvl3lghkrk4l2v0dih4mw4g65nb"; depends=[SummarizedExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.13.0"; sha256="0z9dspkjvjn20q542bjq7xyc7fpy76y3ic01h14cvql42m0vhl53"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.17.0"; sha256="0hz9vf8fplqm3gfrfiiirm0w6g9x6bjq7l96275aizbx3g6a80kb"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.15.0"; sha256="0xkc712swyr9w267vsbnyhpjif47mjbgkj52f0y4b2s7vs521h0s"; depends=[]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.17.0"; sha256="153zq6qpk02mkk31v5sl129j50wiw9n8c7n28f39w0mzg93yjyv5"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="0.99.3"; sha256="0q9j82m0b9vpl7an4kqbbzlpj50qv47fbi7anj7kkxdk8w2ck0l3"; depends=[AnnotationHub curl ExperimentHub]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.17.0"; sha256="00fmvpvp2bi2cv0441bzchir91iz8ip077m350jhp99nzcj6khg3"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="0.115.0"; sha256="0d1sm0bcfwd7q644jdxp069q4qjbzrg44srm60knxhp1kbf2ll5i"; depends=[]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.17.0"; sha256="1cgr86ibyz4xmhsrmrr0qx8f1xhclw7q4mrrbr5znvy4nvhbzpz6"; depends=[]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.17.0"; sha256="076h70m11z178q1v58rbb1731nskck64sr4w29x1jby8h87rqkvk"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.21.0"; sha256="1ccr0zcqwffizqbd624j980kn40hmic2497mj2ws19chwqxaz24j"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.19.0"; sha256="1yppixbw3pxsaag1zfsd39p78d5l8702ysxxjgnmi50ak0lrwb2w"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.9.1"; sha256="0hix85s3m17f7xlj4n4qdhff799r4hf78bc5gbpi8djykmbg3glq"; depends=[BiocGenerics]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.19.0"; sha256="0mpj8j8s9380lf830b862k2rj1mpfa3vflkai5bacwnx9i3dbmnz"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.19.0"; sha256="07fyj1vdpzkz8iw6d9bqxgi4482rvq0r945p3rxa5a0cvwcsh1xi"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.1.0"; sha256="1whm1a9r5bmrdzqchv7qzgnxnclq1qbzqjv0p6f6d6y7mw3rr6f6"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.9.0"; sha256="17pwxdik4phg1cc10ycp2j38n63l1rfna8pzz16j05858ig24lif"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.3.0"; sha256="095mhjpni166p351k50y0605gb3ydsrhdnf8i92w6q84qnl9dapw"; depends=[]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.19.0"; sha256="1gby12vp7b88h3g86r5r01lj86chs30q505qijv3zq769px7fd2g"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.9.0"; sha256="06jmawmj6sssjjp2jhfzwbzhp8lv2jwbgaaz9qfwbxhnscxzj3cj"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.3.0"; sha256="1b7wn4kvqlb4fww98505nwnwfj5knsivx9fzli5fda2k4vzf6d4x"; depends=[]; }; + waveTilingData = derive2 { name="waveTilingData"; version="1.17.0"; sha256="1w0wvnk4r7vvg9xvqmpmwzbp1sr7plg214d6wgdwgmp9bm785vxf"; depends=[]; }; + yeastCC = derive2 { name="yeastCC"; version="1.21.0"; sha256="1kbhbqcab7p3p160xvgwka8gfhxnjl05p9hxb7jjixi4yr30dzvj"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.27.0"; sha256="13vz99brk9bb10swlrisiiwilyjn6pl1z3arw47sahm7grw4sgpc"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.19.0"; sha256="06gnrh6kll5rmdvhigrf7blyyap6dz517gkhx2ljvlbwwz1hd35l"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.17.0"; sha256="0xq65383vmh1jnfxnfhrzfdhr5s0qzy0xb844d8lvmsn77mq7jpr"; depends=[]; }; + yriMulti = derive2 { name="yriMulti"; version="0.11.0"; sha256="0gsr2y94hfmjmpz37y7q80wnkhlz8q028qn7dwm15a5rvzvs8ccv"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.115.0"; sha256="11lmhpd94vywkir5m02qb7j278k7hjlp085xq9wgaxmr07vxzyy6"; depends=[]; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index efb91b43bb04..78823c4f4688 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,1483 +4,1545 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.6"; }; +let derive2 = derive { biocVersion = "3.8"; }; in with self; { - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.8.0"; sha256="0l2zn5hqbab30lnzk856iki51jn4l9na7jdagibhvf777v5jcz51"; depends=[ABAData data_table gplots gtools Rcpp]; }; - ABSSeq = derive2 { name="ABSSeq"; version="1.32.3"; sha256="05pcn9p24nifz10a9pzrwkmsps8yhrr214yryypapshghb7kmz76"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.46.0"; sha256="19m6qlcvylz8qgvcagsnir0pjhdyl4axdfj9q53q9ff1iraw6qwj"; depends=[Biobase multtest]; }; - ACME = derive2 { name="ACME"; version="2.34.0"; sha256="1n7scyw5lklzaprmy6dy0qim1ypwpvfrzzgczkby1dljk0pd4i16"; depends=[Biobase BiocGenerics]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.18.0"; sha256="02imx6x2hcb3bk6qwgwmwsv22dbbl1a6iyk35paqflsk1kdbn9fx"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.26.0"; sha256="0qy9zihx8bqz343h2wk3iy5j71142r11a2862lz5sj05h94kxy0i"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.10.0"; sha256="1c3mq7lm91779w27c35ych1sp5rcja75zim9a267qc0pqa4xlzv2"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.10.0"; sha256="0q63sfnm4h6w6yhv55m87884ym60g1q1qnd82fqx6vlh4nssvz53"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.4.0"; sha256="0zgl47x8bvdsngq5sp0iq4ssx4skn81l85fspfwl3qyvr4y3r91r"; depends=[]; }; - ANF = derive2 { name="ANF"; version="1.0.0"; sha256="0s39mh0xbrr3kkack6n48jfwg2b0nrqilm2q0v64rf7jpfn6gj11"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.18.0"; sha256="1gy2r863g21phwba59ksf9rp3azgy18f9cslka0l4kxckk701n85"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.4.0"; sha256="13vdv961i48lhkmaxnpg33j628h5a8b6f7s5anvgxskv2b0dzzz7"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.22.0"; sha256="0pry207kvczv9ihs7vcq1ljhll4i3grn08wprip9n9yy1xy4w2xj"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.12.0"; sha256="1b7i4qwajvv5dmn1qn5k0azv3ad5kxjkwnwsgvjlh7m573shdpxk"; depends=[MASS Matrix]; }; - ASSET = derive2 { name="ASSET"; version="1.16.0"; sha256="12863h5f7ib3p26ghim2h0l7zn51y3624rihsybj5lpycnxkam9q"; depends=[MASS msm mvtnorm rmeta tmvnsim]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.14.0"; sha256="12g1dh35azv1z5bc7n7gyr0vnyyi2r2jrvi6x0gyikbdszxwfysx"; depends=[ggplot2 gplots msm Rlab sva]; }; - ASpli = derive2 { name="ASpli"; version="1.4.0"; sha256="19v9p4brgrzijin759n1q8zjrlksrzhmczi1nwhsjgbg47f35vs7"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.2.10"; sha256="0f1j89an2rckjrmvvmy6crmrgz2jxgmmajhx333crl8jjqi1aqm8"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges limma motifStack randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.0.0"; sha256="0b6az665vpdkp82xcr4xgric3nw9204g47rj4316s30l5w5l1j2v"; depends=[data_table GSEABase mixtools R_utils SummarizedExperiment]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.38.0"; sha256="1lxxpldgrsl0nf63cfhbqpraylfb3118y4j8q4xknr7x8pj95gns"; depends=[Biostrings RCurl XML]; }; - AffyExpress = derive2 { name="AffyExpress"; version="1.44.0"; sha256="0nwvgkh9nc9gag9dh85g3x4d5125p00c9jc55knpr11jraj2xifw"; depends=[affy limma]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.24.0"; sha256="197rrlkxmynh8fy1xzmh68d2kygpdw7kkrysar3nsikl051yl6vb"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.28.0"; sha256="0yx9pz9641hi9g67nkhlngz4hbykbp2g4p0xji90jjw6ajf28qwa"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.16.0"; sha256="0plqdj4828v9icn958f7isrdpvqwk2smxacv6qpd35dzlpmlrpgh"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.12.0"; sha256="1spasp0r91lbrc6l0qjadv1yg1m1659dkc2pm1mf09bpplbsagf1"; depends=[Biobase graph log4r rjson]; }; - Anaquin = derive2 { name="Anaquin"; version="2.2.0"; sha256="0j9f3ck23g9s09lf2adbds5pxnf9i0ji06x30gpi1dcakrs6izf2"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.6.0"; sha256="07mwfzpv9ya9ma74n993pihjhi10pjpnzbx1bfvk55h4mcyl7r7c"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.40.0"; sha256="1dh4qs1a757n640gs34lf6z2glc96nan86x0sqaw5csadl2rhnlc"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.2.0"; sha256="04zf864c1fvdlaay2r5cn30fc1n5i3czh31fs62qlrvs61wjiscs"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.20.0"; sha256="01vbrf76vqfvxh6vpfxkjwccxggnha3byqzj333glqz2b6kwx5q1"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.28.0"; sha256="1g6y7bwk573yaays0fmlicxq2452sli0kv41bq8sh4ja2l5jh5i6"; depends=[AnnotationDbi DBI]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="2.10.1"; sha256="14v8g44a6zg9j2rwn9x9y8509k0wr2cw8yccliz24glplb40wva4"; depends=[AnnotationDbi BiocGenerics BiocInstaller curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.8.1"; sha256="08pvswszxnbr6b3amg2g2353iil2bm9bs571c6lf4v8z0z1by8g5"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.38.0"; sha256="01kb4322pfl9w6za6glb777hdyc8j36xs6flz3b11n1mjryipz7c"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.28.0"; sha256="04qnxgywyxww8xd6r8vgy8sglbixd25749dmbsw0wgqk6zcgysim"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - ArrayTV = derive2 { name="ArrayTV"; version="1.16.0"; sha256="1hn5dngk4civwzx1w2py1n9g1k1jv3kwrj6z6ysvfsfi4q668341"; depends=[DNAcopy foreach oligoClasses S4Vectors]; }; - ArrayTools = derive2 { name="ArrayTools"; version="1.38.0"; sha256="0dyd3qwc0x25m66wqd3az8l0mabiw13j5wx2f620psyq0y5ghlkd"; depends=[affy Biobase limma xtable]; }; - AtlasRDF = derive2 { name="AtlasRDF"; version="1.11.0"; sha256="1n52s6saydhh5j5kki9zkilhlxd8nn8463988gyr1jsb4g6fdljv"; depends=[hash SPARQL]; }; - BAC = derive2 { name="BAC"; version="1.38.0"; sha256="04s7fbb8b4is97alj64p86jnh1lgf4a0n02wg3g9rvd75jxmzbai"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.16.0"; sha256="05p006rqydnvz5a8gdbara9fsyn51b5flc05j593bvvlmkc6anl5"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.18.0"; sha256="1qhmrz6ffhhsbnmcc0xmb64psv50b1jd1gxkjhhv479mcfl6mk06"; depends=[Biobase breastCancerVDX]; }; - BASiCS = derive2 { name="BASiCS"; version="1.0.1"; sha256="02acpq0mrdr8l3xa3k32k2mq8k96c95gm9603m5z5z3x3npjdzq7"; depends=[BiocGenerics coda data_table KernSmooth matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.8.0"; sha256="0fv5gyzfv0093dlyrlci9d88fcb0ifgljxwivrxpkbbsll5vrpxh"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.40.0"; sha256="0vbjskazhm5v4lmwdc456r5vl2v848ldqrzbdjrdxjlvd72wfprw"; depends=[Biostrings]; }; - BEAT = derive2 { name="BEAT"; version="1.16.0"; sha256="0x4k45qgzwv6m00zq1jhbhc2aa5slgg5p4g8g909vajc75fpp6g7"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="1.10.0"; sha256="1skkqzph89lx9cwlgyd2xmn1808sn5byfa8mqdq6w60j6vwplpzn"; depends=[Matrix snowfall]; }; - BGmix = derive2 { name="BGmix"; version="1.38.0"; sha256="1778bm1hx8bw00n0l3d5jvfldc7hqmpg2w1nbsc3c017rd1l2ryk"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.30.0"; sha256="0j8sb6ifq2nxvlarm1zqa89yzfs3si4w43ily9nnbmlnhngr6d0m"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.3.3"; sha256="1qxj3izpv4pphq515kqq5qcsg1p847knpm961pcipmikbzxrvfqw"; depends=[Biobase graph GSA limma PADOG ROntoTools]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.4.0"; sha256="0b7p2z69zjxrza2qfgpg6dfk96r9gfjm3v4qzafjy0hrbcfi2d74"; depends=[assertthat data_table doParallel e1071 earth foreach GenomicRanges IRanges MASS randomForest S4Vectors]; }; - BRAIN = derive2 { name="BRAIN"; version="1.24.0"; sha256="0cxci3clyz98r8vx6cq49ypc3s3bkhx8rx0h60r54va6gbp1j2lm"; depends=[Biostrings lattice PolynomF]; }; - BSgenome = derive2 { name="BSgenome"; version="1.46.0"; sha256="1jbzq7lm2iajajn2bifxnkss0k9fdvgqr30mral17cbhp5f6w4lq"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.2.0"; sha256="00w730jxdl83sm385a63d35b2gfxlxj0jlj85xa3li5w94cwpb07"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.34.0"; sha256="07hm54q8db209xc9sfj3w0dbrd7fqdzzs1083dwabfmrgwq69ivn"; depends=[infotheo minet]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.4.0"; sha256="1zaknwb718hpvlrwxfan7xyd3mm7iim3mffsc2d7gfxd5s3fa4q3"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.6.0"; sha256="04wl2s36ji1qdxm5x1nvmb9licb65hdfch319zvhinvsr04nig6i"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.22.0"; sha256="1pck2mnb9ik3lz88xn9g1rgaww1k4khv55fab920gk7plcj9fqvp"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.14.0"; sha256="1xylz923wn9n9cw19hlyrgq3rrf8r172jhi9a3gqlw3bmzhxh7h0"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.6.0"; sha256="1qx0zfxy8xi2djmk8b6fbbipv64gdp9b85acy3z4z9dnsq80qps1"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.6.1"; sha256="1fjin9j6gzxkb9zif2wk56w6axb9ld104p8kly0ld2b3l73knnid"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.4.0"; sha256="1dkch2md8fi23i3pg90rzxy185v6953jhz4l2icgglxhp15ydmfp"; depends=[Biobase]; }; - BayesPeak = derive2 { name="BayesPeak"; version="1.30.0"; sha256="1f8r1z7mmh40nrfqj1b3drjli6zb6hm645a9xi39claid2kvfh9z"; depends=[IRanges]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.30.0"; sha256="153ks6bbhqzdkl88wvszjg5f67hr0gnf1mnhn6crq7i3pjy1jw0m"; depends=[]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.5.0"; sha256="08q93yk0hb4sbavk7i1z2qdklhl87f70ywr7xnq26r5frxcpcxm6"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; }; - BiGGR = derive2 { name="BiGGR"; version="1.14.0"; sha256="1frxzj99qh94ll1xsvvnmgnfai7wfzchsqdrk2s0cp7z40yng13b"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.10.0"; sha256="08z2h5fq1nm192s2vwzv1q6sp82axkk81p05bib71wl5vg0j5fpk"; depends=[igraph Matrix slam tsne]; }; - BiSeq = derive2 { name="BiSeq"; version="1.18.0"; sha256="0277lknj60gniwx4vr3ffd46gldzgjr7lbw8xy5xzdd0wa45wanz"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.36.0"; sha256="1ikjnpg1j7pk6y9jm0p8y28aqrq37xryhj3qnksphwvwwj533xi2"; depends=[Biobase GSEABase multtest]; }; - BioCor = derive2 { name="BioCor"; version="1.2.1"; sha256="0f6r23imyldfacxacmici1r918b700w2i8fmd69d36bvykra59xs"; depends=[BiocParallel Matrix]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.46.0"; sha256="08f8zcmncbmbhrm3y9i8wvjfivskhp8580rcndkcc82wd5g8fqdc"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioMedR = derive2 { name="BioMedR"; version="1.1.0"; sha256="1wdszvk1qkwpfzxghbjz0zvh5zxf1wkd2f29f4hjxh09dkza49r0"; depends=[Biostrings ChemmineOB ChemmineR doParallel fmcsR foreach GOSemSim org_Hs_eg_db pls randomForest rcdk RCurl rjson]; }; - BioNet = derive2 { name="BioNet"; version="1.38.0"; sha256="1pbi461aly08vy16sbakx249q01pyn3iwnp6xbdyi45gr1x9g3c0"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioQC = derive2 { name="BioQC"; version="1.6.0"; sha256="1lrvynzh38h62ikzig6b5fq1j738d0rrpb9bgj1lm1rwf9bbdgvs"; depends=[Biobase Rcpp]; }; - BioSeqClass = derive2 { name="BioSeqClass"; version="1.36.0"; sha256="0drgj7dhx87qspqwrxhmjiycvz2vn14kh9wx5g0r7qimvkga9lgr"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; - Biobase = derive2 { name="Biobase"; version="2.38.0"; sha256="1cgm1ja1kp56zdlzyy9ggbkfn8r2vbsd4hncmz8g4hjd47fg18kg"; depends=[BiocGenerics]; }; - BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.40.0"; sha256="0hwmqv8nimc8gl1c5a72ckmgag5j8886ab62i1irlkfis5x2rj8m"; depends=[Biobase]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.14.0"; sha256="1nzp8kgw13z9pgf885rplj6k37jcldfhbz0adqclxr2gq0yalmyx"; depends=[BiocInstaller biocViews codetools graph httr optparse stringdist]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="1.2.3"; sha256="0fam0j8kwf9kfbvh4h7q4m53via75c5wnbn2g55cv3d37hikbpsm"; depends=[DBI dbplyr dplyr httr rappdirs RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.24.0"; sha256="03wxvhxyrhipbgcg83lqlfn7p9gbzzrnl48y0dq7303xgp232zai"; depends=[]; }; - BiocInstaller = derive2 { name="BiocInstaller"; version="1.28.0"; sha256="19fga27bv6q9v5mpil74y76lahmnwvpg2h33rdx1r79nvljkd19d"; depends=[]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.12.0"; sha256="13ng3n2wsgl3fh0v6jnz3vg51k5c1sh44pqdvblcrcd1qyjmmqhd"; depends=[BH futile_logger snow]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.0.2"; sha256="1zpfb7g353c01ffldrx7251919r6giy58s19w78jf0bslagblv4y"; depends=[BBmisc knitr reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.6.1"; sha256="03pp04pkcq99kdv2spzr995h2cxsza7l6w3d4gp4112m06prcybm"; depends=[bookdown knitr rmarkdown yaml]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.4.2"; sha256="1nfph17y36vkji7yyvmkry134s4naml256p6687ag53klqxvvz7x"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown stringr]; }; - Biostrings = derive2 { name="Biostrings"; version="2.46.0"; sha256="0vg50qdlxqcm2d6axjnzg8wh8pr4c5gz03l8bdl0llmwzp0zclzk"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.22.0"; sha256="1xkmvzv2kdla3mrarlw21w1hz788w71443jbn36a8dc4p6wrnxhy"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; - BrainStars = derive2 { name="BrainStars"; version="1.22.0"; sha256="0fipnpjpsp462dsfsvcrnysca4vsq2k6z15a6mxfxvqs1gybhvvj"; depends=[Biobase RCurl RJSONIO]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="1.12.0"; sha256="1yzn8sghqiy64l9q793yp9r3f1g1zy6ixzxbwb7skg1f5n3j7iig"; depends=[RCurl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="1.10.0"; sha256="1v3d0sfj05f0l4zfw1bd27gjrfkgca0n3mxxc30b42ybdmiif3xc"; depends=[BiocGenerics httpuv jsonlite]; }; - BrowserVizDemo = derive2 { name="BrowserVizDemo"; version="1.10.0"; sha256="0yps8ll1d14q0b93mpmmp0pgrjaqvxn0d7iqvpy9yg888zk46g8x"; depends=[BiocGenerics BrowserViz httpuv jsonlite Rcpp]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.8.0"; sha256="1nhf7sndiakjddvgihicc1vdnzqb8wmmlkng73sim1lb5hrjr391"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.42.0"; sha256="1vxr91xnicbmbwz5cssaviq7p0334ikrirm8jmsaxa9sb59cdy07"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.42.0"; sha256="1kay46cmrlilnjmiv2wnl99a4i9nc76f9j1j5rxg8cqxfq2hhmd2"; depends=[BufferedMatrix]; }; - CAFE = derive2 { name="CAFE"; version="1.14.0"; sha256="0lv0s2d0zqj43dqdkw5m4ac9190l6bfxj73adn5k2fl4wzl3a0rq"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEr = derive2 { name="CAGEr"; version="1.20.0"; sha256="0gavrpwibf8gm53f292x1f64vdr2byx97c18cvxg4x3g5m60vx3n"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; }; - CALIB = derive2 { name="CALIB"; version="1.44.0"; sha256="1n6nlw0da0cyd8ca04gmg3wwpc0sqy0fbxclbxcjhn86rlwyxmg5"; depends=[limma]; }; - CAMERA = derive2 { name="CAMERA"; version="1.34.0"; sha256="1ibs7s611kdh82hyp5fbkp1mlk0c2nksbkys0h3prsg0lkss2jvi"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CATALYST = derive2 { name="CATALYST"; version="1.2.0"; sha256="1q31zzi15q2z46wsk3p4fvq8imxjkyywi849h5jyrvnxhca28mbz"; depends=[drc flowCore ggplot2 gridExtra matrixStats plotly RColorBrewer reshape2]; }; - CAnD = derive2 { name="CAnD"; version="1.10.0"; sha256="17nzlplz9d8dhzm546bznwmz20p7lxnsvq35qd09a3rdcf1abz77"; depends=[ggplot2 reshape]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.4.0"; sha256="0r0aardhmz76zd5lj1qzwyva8la0jv9wczfmak3r0pp2axaw13yr"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.0.3"; sha256="07ighg7y1rpx00xylg1yhd03fvs2yi215rfyii8ckzwf8l9829l4"; depends=[clusterProfiler data_table DT fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.12.0"; sha256="01yakrkpbs43013936rh8qd4giiz7y7cp9jrdx9i4p6h5h8jzj28"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.14.0"; sha256="14s1j2h5cb2gfgn73yvb933ng63cr9i8lx8hisd0g8lcfi2b5rxw"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.38.0"; sha256="0fynvcsjdbgp69i0nxrc8ni58rhb1kx9k5r3nb91n9i8s43gjqlm"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.40.0"; sha256="11pi6awz3858yb4s0z3qf3kcmsdgp6d4aj41g4lfix1sv5amllch"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.32.0"; sha256="1br3yly4f32yqqnamscnbkz60bpyphj59igw4jnc8zj6ax0rfz4c"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.36.0"; sha256="01c4knp9i0k899h34fa7xzd2agil2pis5h2cnnx017zfcfbjf9sq"; depends=[Biobase CGHbase]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.6.0"; sha256="0az45ygm4xjkfjz1s4wyq4xqy9ymaf70rhayvavjz4fcnq03z4fz"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; }; - CINdex = derive2 { name="CINdex"; version="1.6.0"; sha256="0lr0fqqm6fakavjx0pw3hhyxxdxgc6ncxp9qjw9macinmkgw5r96"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.36.0"; sha256="0l5ikjvfdpy054xsb21z2dz3mjsr3ni639dz2205kpp5l7nwlckd"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.24.0"; sha256="13d34cpg5x9nyl2vb2302p8v0x8mcx81qj4v0az242zchn679rbs"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.14.0"; sha256="1yf0zpy5qp1vfrjkkld1zp4xiy1jj7rk0b65cbpmhxk6la50wlbc"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.20.0"; sha256="0jrfv8jis5sd4x5zqmk0p5vcb23b42q128b7p35yyb59gjnnm5dz"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.18.0"; sha256="09h2f9asrpw6yrzpa7cq81bl3viz9nl9s0nfdm2af7bvlrwpyf79"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.20.0"; sha256="171i49bhfq8vy826m9kpg8pvpgs66al71yd5ydpmv14zkkjz3fnp"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.20.0"; sha256="1w6xwggfm0sh90n6qb4gdx4ljpav8ax20r667vk3ysq8vyd7fgqy"; depends=[CellNOptR genalg]; }; - CNPBayes = derive2 { name="CNPBayes"; version="1.8.0"; sha256="11083vhq1fgqzav5xlcada0ryyqyhgcxxr7c3ijwi6z7xrldx2fm"; depends=[BiocGenerics coda combinat dplyr GenomeInfoDb GenomicRanges ggplot2 gtools IRanges magrittr matrixStats mclust purrr RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment tibble tidyr]; }; - CNTools = derive2 { name="CNTools"; version="1.34.0"; sha256="0nxdx3h5s0fgr4m4i1lizdcgxb7wjddzwxj28m5l67vm919734ka"; depends=[genefilter]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.8.0"; sha256="087m2r7fcw6z7ybbsnzxycsj289c2q6lq1d7zam1ilqhw1bi4rxi"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq openxlsx plyr Rsamtools S4Vectors]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.16.0"; sha256="1rqjms7k3630kabbc6ish88308lqlrlbzkjflr5apcilc6rfyrx1"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - CNVtools = derive2 { name="CNVtools"; version="1.72.0"; sha256="0ihmgg5f0p7yhg0273jb785fcrhcw704vz8r6ban8c63wk0qbqb5"; depends=[survival]; }; - CODEX = derive2 { name="CODEX"; version="1.10.0"; sha256="1knfgii0n8grn4436aksk7f2xkk93ih2snvrp7p8pkr206kqadnq"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.24.0"; sha256="1ggxn35hif4x4k1rbnxinf0pdqbg1n53wym9rm5zs6cnya4aimgj"; depends=[COHCAPanno gplots RColorBrewer WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.16.2"; sha256="1g9y5gryy1r8sg75008v3b2a1l2wkxvf8h5bnljnkc0wsd4f4nvb"; depends=[abind clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.6.0"; sha256="0kmvhwyzxz9ahvvzicigxal3r4ya8y5i090m7pi7d1p5arir7djl"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CORREP = derive2 { name="CORREP"; version="1.44.0"; sha256="10bjv02x2xzanajfbsvbxd7s2s07z0gydx1ypmbfym41jjwac9ra"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.12.0"; sha256="0x5kg4c5ml7ndqq81k5jy07fyra4q6nhhly6v7qd98gpmvrj6gnk"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.18.0"; sha256="0qvswjday1mjfa7009kgak09crgi6y7l1irc5hys4b8zmrnxzyc0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; - CRImage = derive2 { name="CRImage"; version="1.26.0"; sha256="1y1xs3agswi4da6mcra3pvssasd4cvhdr2sv664as0dg9m7r43a8"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.30.0"; sha256="1915ns969hs46rh85y2krdqgrc81yxhxfv6h8narcni805rgj8n5"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.16.0"; sha256="0xxsck347hvml9ppl9vkvh0f40mkfskwbasz93x5jqvkf046jxda"; depends=[]; }; - CVE = derive2 { name="CVE"; version="1.4.0"; sha256="0h8xcbnaamz479rax8c8ni7xnqsi43nvkshqhmlynfg60m8yl6cp"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny WGCNA]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="1.4.0"; sha256="19pp282x994ykxczyvls8x71dfwzra21myxky4w2clhgabhqrw9h"; depends=[BH Rcpp testthat]; }; - CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.20.0"; sha256="16csf668vxrngc5him5hbkj1bbzhi378sxwlfvh2dia2zipazg0w"; depends=[AnnotationDbi limma qvalue]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.4.0"; sha256="0n3la51s0pk3nmbdpv4z0y633qydajby3fy6nxwhpdkkxmlirrgc"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; }; - Cardinal = derive2 { name="Cardinal"; version="1.10.0"; sha256="1yda7zzrmgyz58cg2myp6diwn39w353s4jkmp4d3yhvww2m9kyim"; depends=[Biobase BiocGenerics irlba lattice matter ProtGenerics signal sp]; }; - Category = derive2 { name="Category"; version="2.44.0"; sha256="0mkav04vbla0xfa0dssxdd0rjs589sxi83xklf5iq5hj3dm8y0i8"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.10.0"; sha256="0fj6ndrg78r6ss7ngmpja9dg482namrxxg6vdjdn4agiznk6jn92"; depends=[igraph]; }; - CellMapper = derive2 { name="CellMapper"; version="1.4.0"; sha256="16pa802b7lg398p8r4ijbiimzhg86fpyq54k13l7pmc4qp26405b"; depends=[S4Vectors]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.24.1"; sha256="0p6gksg6h5mbja0mfkh755cvhv7bzkwbg4dy0y34aighz945vy3a"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; - CexoR = derive2 { name="CexoR"; version="1.16.0"; sha256="1n3j5l3dlpigd0ihls8s3kwipajj0d9cp0v592f54v75q49fbsz6"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.9.10"; sha256="1c8sadqkx6cxd1hgms340m2jl3pxmkxk59yfbp69rqbrbjlx2zjy"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel FEM GenomicRanges goseq Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.8.0"; sha256="1nj3903nhii76v6jrm7bfw8kngbq525zikb3nwhvmp4905c77z40"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.14.0"; sha256="1nnmgzad7kzydrmz374f9xvf8s13q6vhanz93v6d9jqh6jnd5di0"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.22.0"; sha256="0wcs7gw0kgvbk1f4i8j9cr8kwv1lj45zv9q069cify78rdb106rb"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.0.0"; sha256="02w4k41wx9cqfk0zjzcv8vdfgwv9rswijmdrsbmcpbrmbwn2jlxi"; depends=[Biostrings BSgenome GenomicRanges IRanges RcppRoll S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.3.2"; sha256="0hh7ppc4fsil7vczng897dkzz2a1x0s2j2qvw1v2g8hm82mv070k"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.12.7"; sha256="1zab489d7a6bh6ylc68x6yn47gdkmr7p3677grx9l2qafrryjr04"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.14.2"; sha256="1db2k7j0rr9q8jlfxlji62zyhzfh7yhsacyg1dj5sgwbhhn0xliy"; depends=[AnnotationDbi BiocGenerics boot DOSE dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.32.0"; sha256="0igqlfr5grhkr7dsdyg3c31d3r1wpn413vxmzlckiimfwdi35rqv"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.32.0"; sha256="01kmhzyvnp03v9xydm9xrrkdmlf5dpsnzzcf13i9r03x3m44r4ga"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.16.2"; sha256="0zrg6f5cg54f1bpwjhx2h97w267jr2gyncgfyjs7njkjwwrl9ads"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="2.30.2"; sha256="1n83s6bl5lcqgrs30g307vji3ras39pagwgfwcaknhdhwv5wx9d4"; depends=[BH BiocGenerics DBI digest ggplot2 gridExtra Rcpp RCurl rjson]; }; - Chicago = derive2 { name="Chicago"; version="1.6.0"; sha256="1s2qrz7qbdn3nbkjqyyrmh04kbdrknc7w5cdasg5sch8znnvq6gw"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.32.0"; sha256="0kshy9ri174ksgdnifmf57mjkyjczcx98x98idjmjcxlwrzx4xjr"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ClassifyR = derive2 { name="ClassifyR"; version="1.12.2"; sha256="1ybcsvh45i4dgx0b7z1wxxh51ydfkx5bh75343f1dpwl1igp8cjw"; depends=[Biobase BiocParallel locfit ROCR]; }; - Clomial = derive2 { name="Clomial"; version="1.14.0"; sha256="1hd135pcs5sngg1dw93b3f1qnrbl3d1ynyk0wbaal9wzys7fzmcq"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.26.0"; sha256="1l19zpnnrx1xz5dc2mvyljlllhlk0gjld8lk675g8iqhm3i8z861"; depends=[DNAcopy]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.0.0"; sha256="0iff5dsvl92gfidgly0gyv4ivb97j45rmmc5rlllij1z1p0mjrhq"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.6.0"; sha256="19wjjzv2f6lkkl0vyyx9jw4y6dqvl5qz7ppk85j3k3r9yhjlpnv1"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.50.0"; sha256="0k8nf7yzbwyyxxgcn4qa7f254vngkabbaxs40ijyyzhwldwdqcjn"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="2.12.0"; sha256="1yhxk94r9l0yz03n3d6gd78daazgbgy84f2840al04b74mr89bx8"; depends=[BH cluster doParallel foreach ggplot2 gplots RColorBrewer Rcpp RcppArmadillo reshape2 shiny]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.16.0"; sha256="1d702vgki4wqx355y5v83ajga3j477l2bgvb0lbpkxjaxi57zm80"; depends=[arules igraph shiny]; }; - CompGO = derive2 { name="CompGO"; version="1.14.0"; sha256="0acjn3w7axq4674p2jsc71hga32svd2fc3xn2mrs85i9bcckwmv5"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.17.1"; sha256="1x6kp55iqqsd8bhdl3qch95nfiy2y46ldbbsx1sj1v8f0b0ywwcy"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.42.0"; sha256="1pjw7r4x9867zjvdva58jsgask94ydqzrwzn3z6li47bin5ic0m1"; depends=[ALL Biobase cluster]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.10.0"; sha256="17fy2lc5yf3nh6v077kv87h53n263hqz2540lzrl0vjiqrl2plca"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CorMut = derive2 { name="CorMut"; version="1.20.0"; sha256="0dy02halbp57vmfbjgjhkgc6icxrvy9nxpb92arrgl6ly8bflcwx"; depends=[igraph seqinr]; }; - Cormotif = derive2 { name="Cormotif"; version="1.24.0"; sha256="1inxd86lndp2jmdzvjj222697safcppr0gzhcfrcj4bygl36ma6v"; depends=[affy limma]; }; - CountClust = derive2 { name="CountClust"; version="1.4.1"; sha256="08097iyxx2qm675bnqm8c4hq6rwyqsdfzxkf46mllpyf2mk3wwwf"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; - CoverageView = derive2 { name="CoverageView"; version="1.16.0"; sha256="1091mxiclb3zhr48bdj7z8gi3v69l4w25cfpfbxhhp70rffn9xfr"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.6.0"; sha256="15za6ysnnjfwmiq2dhbpr3kww6c2jvc2y1mf8rfpqx56bd1dh3cb"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CytoML = derive2 { name="CytoML"; version="1.4.1"; sha256="1jj79adwrzwx012xvw3czv0m94jc3j2ibpijdfbz8fpjhynrzwqb"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; }; - DAPAR = derive2 { name="DAPAR"; version="1.10.4"; sha256="15ghdx2yccsk98bmynljiwdfkjjfqafq62wc87zsgydql59c10kh"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr foreach ggplot2 gplots graph highcharter imp4p impute imputeLCMD knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes tidyr tmvtnorm vioplot]; }; - DART = derive2 { name="DART"; version="1.26.0"; sha256="15hqsdi7pa1qn5c5af2izhf609c7lmb0zsv2qwyc9xbf7dn42qmf"; depends=[igraph]; }; - DASC = derive2 { name="DASC"; version="0.99.11"; sha256="1wm43kgvq3wkwp8hmz70m9c7yxxjsanpqxvcm6x63bna02ysb90y"; depends=[Biobase cvxclustr NMF]; }; - DBChIP = derive2 { name="DBChIP"; version="1.22.0"; sha256="07psmmvcdl4r5m71kccd9rd3vk521ilhwmcll37pfrmb16s1856x"; depends=[DESeq edgeR]; }; - DChIPRep = derive2 { name="DChIPRep"; version="1.8.0"; sha256="1ii7mdppqk3gg3ly9x35d0ij2grmi7678dli4xfd2mzkzyc5b6wm"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.6.0"; sha256="1rc9vipclkiib71684dl0qrd6yll672xxbig22x8v99hscdd3d8y"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEDS = derive2 { name="DEDS"; version="1.52.0"; sha256="18gpj5xk5byiqv548s0vcvp8l5f0k49k8z9iq5qsn53jhh53f26s"; depends=[]; }; - DEFormats = derive2 { name="DEFormats"; version="1.6.1"; sha256="1wix5n76438896sz62cgsrzjjx4cw7mhxgvsq43w2vpsp3gdrp59"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.30.0"; sha256="083w1vrp0s3xkiz1qm3d03fi1dm69gspq7pqadqwrc3qypjkp3hi"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.14.1"; sha256="0mbqmkgp9l7ygrh6dsf77mf9fqrql7i4wpw5rg87l6p2misz6662"; depends=[Biobase BiocGenerics cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggplot2 ggrepel knitr logging magrittr Nozzle_R1 psych quantreg reshape rlang S4Vectors scales SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.32.0"; sha256="0dh1ig8nj3mf0f8masf48imkkadma0dywbraydcy3cw9vdnc5c7j"; depends=[qvalue samr]; }; - DEP = derive2 { name="DEP"; version="1.0.1"; sha256="0glkq6xlhcsr364zl4nkc7g3gnscv0yb3kcyvhzgm3bbfvd9q7ac"; depends=[assertthat Biobase broom circlize ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DESeq = derive2 { name="DESeq"; version="1.30.0"; sha256="0mn5w3cy16iwwk8zxs7za6aa6cnrca75z0g45zd5zh1py5d7nfv9"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.18.1"; sha256="1iyimg1s0x5pdmvl8x08s8h0v019y0nhjzs50chagbpk2x91fsmv"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.24.4"; sha256="1a80yv742fx5c7qav7imsdybphf0d5bixsqyf8w5zng7fk8j16d5"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEsubs = derive2 { name="DEsubs"; version="1.4.0"; sha256="1i9blymzj18r9646vac9grrjxw6xar8m6chn1dgdila17jag1wlp"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL samr]; }; - DFP = derive2 { name="DFP"; version="1.36.0"; sha256="117gmzcgr9wr9wb7g0rm7wlrakd76ys1frhmhx1k6ps97ibxlz1k"; depends=[Biobase]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.0.0"; sha256="1y0wmxks51h0d21v8g4mryq7kzq49khhpa88fbhza9xp2bmwk358"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.4.6"; sha256="10b9qlr0la3ilrw44vcq4y8pg7284adrh506wbx7f9ipgka8qx4y"; depends=[GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.10.0"; sha256="0z5rzzbnlw3m1yp8d5y2y4rplz73q06kh5gkf57rmpg1pzkfbvca"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="1.14.0"; sha256="1kzb6lai3969v8sjwwzrzm9x2adngh5ij2jf0ig073aab3cfibh6"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.14.0"; sha256="1q489w68q4mxg7f8h36f7gmwbldc2fq3a69k6b25d3wg7583v4ax"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.8.0"; sha256="0x3pwln8v57w045kxr6hq778hpy5f21gfq5m6wj41rq9awvx5s2p"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.52.0"; sha256="127il5rlg1hzjlhwhs64x3nm18p00q1pd9ckb2b9ifl0rax95wai"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.6.0"; sha256="1p44bi5pysrc4pw63zrhxy5q4yqh81kncnp585cjlcbbbyqwz8sv"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOQTL = derive2 { name="DOQTL"; version="1.14.0"; sha256="0hpvh84la7i9m5l9c1hrhmr62f031dyv7nq6aai58bd0lqh9izp5"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; - DOSE = derive2 { name="DOSE"; version="3.4.0"; sha256="10dw82car6vi13lic2dghm1gw3a8d2s6nrdhh69fhb7gj6lhr5ds"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim igraph qvalue reshape2 rvcheck S4Vectors scales]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.6.0"; sha256="17z8flsb5ngnkcd1g1fj3m0yms71w6q45abc30wwvcnxrg1m9scn"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.26.0"; sha256="0an0nr64f46s9smli0lpj6z62b25dd6xmyk92ndx9kp38vldmv0z"; depends=[Biobase bsseq DelayedArray]; }; - DTA = derive2 { name="DTA"; version="2.24.0"; sha256="0729w0zkcnwk3rcf4ziz5xw4fsv4dq9p9ri8yizxsxiara4lnhlw"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="1.2.0"; sha256="0m16yh2cfqb5ysdir4b5c3v73204ac5fa0lyvi6x1djkm6nj04hh"; depends=[caret corrplot DESeq2 e1071 EDASeq FactoMineR FSelector ggplot2 Hmisc kknn limma lubridate MASS pheatmap plsVarSel randomForest RColorBrewer reshape2 SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.8.0"; sha256="1gf5c3m0jwgipz1wl8viq781kfj0nmpa29cjad9qgrkpihfagh03"; depends=[KernSmooth]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.20.0"; sha256="1877jcl6l2chfa6djv227hf2bqcb4w7frnhmrlh6rzqssq5zrx43"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.4.1"; sha256="13qg2nmmhicl1n4ry38syz6ah6mvq2vw6c53id7piyyk0xj3rhrc"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.4.1"; sha256="0s7h2giyvz04cg6248kbbzpwhxdrpnsvl2s8k5c8ricisd9aaz4b"; depends=[BiocGenerics IRanges matrixStats S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.0.3"; sha256="1cxjbjdq9hg9cm95rci0al7a4pk2h73ym276ahw9q4977zbg6381"; depends=[DelayedArray IRanges Matrix matrixStats S4Vectors]; }; - DiffBind = derive2 { name="DiffBind"; version="2.6.6"; sha256="1sm5h6nq77hjfis6kr1nqyizcxgfz87dgpqc4fxlfqkmsd9n3vkp"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges ggplot2 ggrepel gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.2.0"; sha256="0nc07vn9ldhnv9wm5i9b7axkvsi7v5gcf8saa6zlkr7mf5lsinhg"; depends=[cba]; }; - Director = derive2 { name="Director"; version="1.4.0"; sha256="1yq4amwflg168fgdr91lh4c8y3azw2fdsbp2b0j6mnhcjqgmaxk8"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.20.0"; sha256="1c4s6x0qm20556grcd1xys9kkpnlzpasaai474malwcg6qvgi4x1"; depends=[BiocGenerics IRanges S4Vectors]; }; - Doscheda = derive2 { name="Doscheda"; version="1.0.0"; sha256="04dzr26lvhcd9h6b5s61csygrc1357b8d6zxbn955s6crbr5p2ns"; depends=[affy calibrate corrgram d3heatmap drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.18.0"; sha256="068ps1ril55fhfbxlzchrjyx75xvqqh8ny7gp99k6hcmksjnbbsb"; depends=[]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.20.1"; sha256="0bw9bwwacp9mznldl61r5znsy34yb1zkil6fd9ilxp8wmxicphjk"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - DupChecker = derive2 { name="DupChecker"; version="1.16.0"; sha256="1fxcs2vljp2rh9qp2xmqp8ri6v41gzdy51jhhv33rxfgh9jz70g5"; depends=[R_utils RCurl]; }; - DynDoc = derive2 { name="DynDoc"; version="1.56.0"; sha256="1zc43f2v7qh44slc0za71jb0a5fsqp55y5fbnb9fnd6139im5vxc"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.20.1"; sha256="0xwq9jd9sn5h3al7k03byr4diyrmk4jx344spdcaw58a830w9q7j"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.6.0"; sha256="13qgmcwv4b06zgaalqf9sq0wkkhnf38h98fw2dqql8z9w3n5sbnz"; depends=[edgeR gtools limma]; }; - EBSeq = derive2 { name="EBSeq"; version="1.18.0"; sha256="0pr7xaf64wn3ry358raqd7vpp7p3zq88qp9jkx6xf9f83bmyx7mw"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.12.0"; sha256="1bg4y0jqf034p400j30yskb0fhxk9mlnbrmdcr29r2212xra4g7b"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.42.0"; sha256="0hd297adyp3fkppmzncdcn0y7kvgixkp460816vsrzphs4v2fi1m"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.22.0"; sha256="1k9n95hqhd5rb811vc1idjslv6m5x3s30zv9h545h26cklqqmd76"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.12.0"; sha256="07zm89zcivyn2261aq9grqmly8ji482kr9h9dyfknfdfrpv7jpwv"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDDA = derive2 { name="EDDA"; version="1.16.0"; sha256="000kp07khndncb9d4gql8gkjwrv3r08qf118g51zcmfrpzn26a30"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; - EGAD = derive2 { name="EGAD"; version="1.6.0"; sha256="0dxbw39dymwxd6hvnx9c1y97z6d2br55c0md1l72wajf5qa8nvfc"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.6.1"; sha256="1srjms8xa9qnnm6mzlgmdqk0zd4485k6d20ygzqqi0jj86xa6ava"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELBOW = derive2 { name="ELBOW"; version="1.14.0"; sha256="0hw7sb20id7zxdashrsxxhcw96z0m3yp12gizq4x5gw53iipw73w"; depends=[]; }; - ELMER = derive2 { name="ELMER"; version="2.2.7"; sha256="0qdl79x7g1pd8z16s3zja2hvmf9bmr6520gh7ghavdh6qaxqji0h"; depends=[biomaRt circlize ComplexHeatmap doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr readr reshape rvest S4Vectors SummarizedExperiment TCGAbiolinks xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.8.0"; sha256="09lkg7c1sl5jmg8z1yfaqw5hy3jcpb0wyh0l9sc14hbsncvq1nmh"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.4.0"; sha256="0mw3pgbpk1q0jgzcb3pk2kgdw9igh1zm4bywzfzg7k1k1xjzk3yy"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; }; - ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.26.0"; sha256="0vc9d17m5bdjj4wqcl5lr99bv89yzs75m94rfckjjzvx7j6cmqcx"; depends=[rJava XML]; }; - ENmix = derive2 { name="ENmix"; version="1.14.0"; sha256="117jp47hpm276x4q25jwqfagymvay0qk3ji5l9xvrj74piwqpgwh"; depends=[doParallel foreach geneplotter impute MASS minfi preprocessCore SummarizedExperiment sva wateRmelon]; }; - EasyqpcR = derive2 { name="EasyqpcR"; version="1.20.0"; sha256="06lmq3pp0j86rv9bgs809r30qscgpxv5vjbkccf32q9wv82vd7hw"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.6.0"; sha256="1wv1anm4bwm2kqi9lqn06bl1w17q6wvc1v2amrifbqjbmi5k7g8y"; depends=[]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.9.4"; sha256="03n7w56r14y3jrrsdl2awcan5d0hsn3kd8900lrj015pmgf2r9d0"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.8.7"; sha256="12wrxbp14ahjjph85g040f72yk4j47svsyyv7b9s56mkc513vd6v"; depends=[AnnotationDbi BiocFileCache biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; - EpiDISH = derive2 { name="EpiDISH"; version="1.0.0"; sha256="065bvrfsssf5y4j9axqdcybqb5i8y2hnl09f9jr44bpbay34ay5f"; depends=[e1071 MASS quadprog]; }; - EventPointer = derive2 { name="EventPointer"; version="1.2.0"; sha256="1yh6yhaf8c2rp8f4ipsk014552pplb28cl5z7wjwvarjb21waj05"; depends=[affxparser doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph limma MASS Matrix matrixStats nnls prodlim RBGL S4Vectors SGSeq stringr SummarizedExperiment]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.20.0"; sha256="0saxway680972dmn6q1gbbmkxcwv08hl2bq973qbyrv5drg6g4vv"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="1.4.0"; sha256="1hgg3x6r4ldlqjv8by6vv5n5f8h647y3lvxwrmi79c6dvrghp0j3"; depends=[AnnotationHub BiocGenerics BiocInstaller curl S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.4.0"; sha256="07nd9n09naq8p276fbnad3wp95y11n5ws65xncf66i7356a3rkw4"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocInstaller curl DBI ExperimentHub httr S4Vectors]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.6.0"; sha256="099xkp39mbdg1xm6mydnpwrkbyn3y719xf1s4xyva0nkwx1g14b8"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; - ExpressionView = derive2 { name="ExpressionView"; version="1.30.0"; sha256="1kjp8ndbx5bhk941ba6nza42h8zi97xwam2q0pf8pk168sch41kr"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; - FEM = derive2 { name="FEM"; version="3.6.0"; sha256="0bs7p9lqp6bi7c9j8vi4gbj8md14cqc9vxxkfb0bc35mr5641q4d"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; - FGNet = derive2 { name="FGNet"; version="3.12.0"; sha256="1f33k7dx7f97kzjpq1jvs614vjsyg3yd03s2y7xxwhydmx02n7vs"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.12.0"; sha256="07q5paypybw8qq17wyl7qqlrdy5kfg2k24rj2ic4gjgb6qiic38b"; depends=[abind EBImage]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.14.0"; sha256="1nyw8h4kjddn75878adhlilwjnm4wlyhksyp2ygx6cm35fbqa2v3"; depends=[fda MASS]; }; - FamAgg = derive2 { name="FamAgg"; version="1.6.1"; sha256="02fy27g8vi9byhnfav0121291jbwiypnj1r9i56hbgwwzplqbr5z"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FindMyFriends = derive2 { name="FindMyFriends"; version="1.8.0"; sha256="13f6hdjn4l5xfrdskq2abpzczxcm8sy71fqpfj6hsxzj06fz9a36"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; - FitHiC = derive2 { name="FitHiC"; version="1.4.0"; sha256="12ylhrppi051m7nqsgq95kzd9g9wmp34i0zzfi55cjqawlpx7c6n"; depends=[data_table fdrtool Rcpp]; }; - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.10.0"; sha256="0mgqnmznqpy8ikzg1829bjgxnznm43wkgirhpgfskdxfzr4zqs3a"; depends=[jsonlite RCurl XML]; }; - FlowSOM = derive2 { name="FlowSOM"; version="1.10.0"; sha256="0kgzyngm36wzwgsrf40p00543w4spisph78yp5hl5i4hghh4zkij"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; - FourCSeq = derive2 { name="FourCSeq"; version="1.12.0"; sha256="08fq289m8g7fgmsrph1gq45q6zpfnrzpm0n4qyf2vc5hsdgnm4qh"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; - FunChIP = derive2 { name="FunChIP"; version="1.4.0"; sha256="0gx2yjid47p9q7f89823avqj4r367s1ifvh4p2g351gzij63p9ab"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - FunciSNP = derive2 { name="FunciSNP"; version="1.22.0"; sha256="1lgvca8npk1092dyl5jhx46ir46b3ab5jgshj5b19dg0bdzi0fj1"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.2.0"; sha256="1k9rd1q47ac75h3vw54kxi89g8w11bis6cz26xkvhdcim97bxs10"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.0.0"; sha256="1q461l1dy7fsl1y081iyijwizk342q7v5l0irpmx1gnp2kpmvpr2"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GAprediction = derive2 { name="GAprediction"; version="1.4.0"; sha256="10hknskkfvpzjzcih1h6pl68p9ix9zh98ym1gzw68qjx0mhlm591"; depends=[glmnet Matrix]; }; - GEM = derive2 { name="GEM"; version="1.4.0"; sha256="0r6zgsyfwra3qx1vis7a7mr5aiqyj7rpgs3cqdir2yjlg3y01r1w"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.8.1"; sha256="0w3xrw6a1fkcp49nyarkp4yykjk79gqq7rzwixdk4363d5pnm7gp"; depends=[Biobase BiocGenerics gdsfmt GenomicRanges graph GWASTools IRanges S4Vectors SeqArray SeqVarTools]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.0.0"; sha256="1lxbkhlvb082nrmlq2b57chi0vpyaqwj56ngbzli8qdmp1gz4qd3"; depends=[reshape2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.40.0"; sha256="003inwm8qkjdaihlx4009nwj3rgjn3xdk0m8k696qhniq99gcd0a"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.46.15"; sha256="1l5vcksida44zkrqvrp9krqd4yhn6xh24y9jfvkyjvhq4x8fl18z"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; - GEOsearch = derive2 { name="GEOsearch"; version="1.1.4"; sha256="0k0vn99rz2821gswb834nn9ib099a152y2828ka7qvhag4shzdy9"; depends=[org_Hs_eg_db org_Mm_eg_db RCurl]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.30.0"; sha256="0sl9m7lk7jczpcfhn50yn322v1s65d9swjidcnzk3ydv47z419p8"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.22.0"; sha256="0lfm19s4z5j7zhpzhfa7rqdz09ip05cf2zbnsqv9widdmkcw2wnk"; depends=[car]; }; - GGBase = derive2 { name="GGBase"; version="3.40.0"; sha256="0iavmbfvx5in8pq4c7bx63anlj4l1ra5qmr3pgx7x3cp43d6qsza"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; - GGtools = derive2 { name="GGtools"; version="5.14.0"; sha256="0h1lcz363z7gcy3i3ap0vrdrq71wlzr3y0f9866zmn67hlrfbp7i"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; - GISPA = derive2 { name="GISPA"; version="1.2.0"; sha256="1kyghhfv0jabc823kxcab267snjnxba7d3swnfssshrxirwbgy3b"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.42.0"; sha256="1ay8wrhgwv6jyc54pv8xywdhm3v48qavdm6rq7l0n7fy4kydxz75"; depends=[]; }; - GMRP = derive2 { name="GMRP"; version="1.5.0"; sha256="124jzpd0y8c1fdp6ndh75q0nqbcwjkmmm3w6ih2qinanbc2b5bmp"; depends=[diagram GenomicRanges plotrix]; }; - GOFunction = derive2 { name="GOFunction"; version="1.26.0"; sha256="0ykagd4klrsjbf5iqn87anlplvnvvd3fhklpn1fm4fkx1lvg6jvx"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.4.1"; sha256="0if17mizlf1v85nzbzkc3nl8052cmf7a3a04zrphc0rv8ndyl1s7"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.16.0"; sha256="1gy95bywv33if5fkhaihx8h64mcvzn7hrid91zib9asfpllbq3j7"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.14.0"; sha256="0qn9nlr1yfd91p5wriwnvqmwndfzpy0c18zbnqkv7i2s66mcwkja"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.12.0"; sha256="0yfqw3v1ywwpkvnsjz20mkg9ay35hfs4ldab6gza197jbg61qq88"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOpro = derive2 { name="GOpro"; version="1.4.2"; sha256="1djrws9n6znzhzs8lbpclcx227d5fv23mmw181pcnmp9kgf0f4w4"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.44.0"; sha256="04gqfdlx9fxf97qf0l28x4aaqvl10n6v58qiz5fiaw05sbj1pf1i"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.12.0"; sha256="1aqzr7llwcq2w5vn7q3yny7x6kllr62cm43qs3d2qm4iyvfb2a4s"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GRENITS = derive2 { name="GRENITS"; version="1.30.0"; sha256="0bi7vxq3wh9vy4hibpbpk5vzf0skqxs1jg3macscbvwm7ggqs801"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.4.1"; sha256="11ifwb1avizipg2v5safs0i7yr1rrydyg41y76ccc45ygjdy303g"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.2.0"; sha256="1s29c9jsh34qswib39v0xp9ir005d9pa5lv92ka3s8a4y5hxfi7a"; depends=[annotate Biobase BiocGenerics graph GSEABase Iso penalized survival]; }; - GSALightning = derive2 { name="GSALightning"; version="1.6.0"; sha256="1n9dc5ahfslh9yvz81ppgjlnpmcm1c84rsmpgzy2hrzkrrnqxlsx"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.12.0"; sha256="0v6sy4mi3zvgnk0f9diy4zz8vl5n5pdm3yyb6hm6bqy56wx0bl7r"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.8.0"; sha256="1r9kdvrj1f91cdl8zwkhpskdg7m10qpz1xy0a3r67xfs2ciyagyi"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.40.1"; sha256="10cmjxahg2plwacfan6g0k8cwyzya96ypc7m1r79gwqkyykxw5fz"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.38.0"; sha256="1kz27bbccgi34z1i1wlsk8ikqbv2mi8f8i9is0irhl9zgvbrczxz"; depends=[Biobase]; }; - GSRI = derive2 { name="GSRI"; version="2.26.0"; sha256="12silcf67r3ni40g7vsc7iv15arzy7w12abpj2xcjfd9nr4d84js"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.12.0"; sha256="1rdzkv6kf14shfddvrz3pssjgr6pvg6is4lzcvjzrxai4y34n0y6"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.26.0"; sha256="1zvi0w7clm5qg6fv6akqw4cx84kswcgzfzjdkhxsrid0l4hwmw09"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.8.1"; sha256="1vx24scbwr4xqhza4q90jpw3xv1pyd7afbqlxijy2fv4p1fzwi4h"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; - GWASTools = derive2 { name="GWASTools"; version="1.24.1"; sha256="1x8p32f47fki2kl0pkjv4v7az8s1b6zwqjnxywfxy0drs9g6lky4"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GenRank = derive2 { name="GenRank"; version="1.6.0"; sha256="071k23qknpd46x22bj2cmp07mmxj22higw8ma4b0a8w0wmd05bwz"; depends=[matrixStats reshape2 survcomp]; }; - GenVisR = derive2 { name="GenVisR"; version="1.8.1"; sha256="0c8dm4k2fn4g7vpjvd452vx0a1xb4rp5w1ii1h4q96957s8s52hj"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI FField GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales viridis]; }; - GeneAnswers = derive2 { name="GeneAnswers"; version="2.20.0"; sha256="11bdc59ybi1kck3jkzilf0vmql6a3k97b1f9h940h28mhgn5x9w6"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.8.0"; sha256="1157crj12c3girr6973a24ph15rfjw0vcakr42fpx7yhhirs89lb"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.24.0"; sha256="1l8829axy6fp29bkqlwbjcsajq99yb86yp5cc8211zprlhlxb30i"; depends=[Biobase PGSEA]; }; - GeneGA = derive2 { name="GeneGA"; version="1.28.0"; sha256="172hwxp91zj4pvamarnkx9cf1jm3zplws7scb4q00n1nxirhfzfd"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.4.0"; sha256="14jnlc1icg7ws6gvffx3jpmhzcfaznzw6p8i0l1wpx22jyy3qam5"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm plspm rioja Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.50.0"; sha256="1cf8z6wy9yhs1y7f8fimjkx52brgr9fkhjaa9a62d2rvan65g9s2"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.20.0"; sha256="17r2106r9fkpsj592dq6k70n8jj6gv65hrmblnsssck6h0n6n3ix"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.14.0"; sha256="02svcyk1pa470033q2iv8148ypf6gbisxl8f09ksblvrrd0flh38"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.34.0"; sha256="0ycxk1njlrshk6wr466r8jdj3pfl125ilifgrvcbgr526ndalmpp"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.22.0"; sha256="1v2ry9k8kqr95nx1z347f8hqdbawqb8f5p7iq7jb2w1smvhb26fr"; depends=[Biobase limma MASS survival]; }; - GeneSelector = derive2 { name="GeneSelector"; version="2.28.0"; sha256="0fc12sngwsw3sggmi08lb8r8lvb3hp77jqv3k1501nba4gq2wa9s"; depends=[Biobase limma multtest samr siggenes]; }; - GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.46.0"; sha256="174swyvx1j9px2shn1188zgilyiclxclr317gsv5ab7f671lzl8n"; depends=[gmodels gtools mvtnorm]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.40.0"; sha256="0q2jrpi6ha4hsxsmprwsrls2ybs0clms6vh7smwa9j9g5lz7i93y"; depends=[gdata genetics MASS]; }; - GenoGAM = derive2 { name="GenoGAM"; version="1.6.0"; sha256="1dvaapinarpgn3i63iqhdbjh9mc5h7sgdxwlv9d55l42d1jyj6h3"; depends=[BiocParallel Biostrings data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; }; - GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.38.0"; sha256="15p75cbbgwgcc3awyvawkah491yim0rp73af815pfiai11a51i4m"; depends=[biomaRt]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.14.0"; sha256="1jhm0imkac4gvchbjxj408aakk39xdv2fyh818d3lk295bz6bnyp"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.14.2"; sha256="1659nj1xps7vliy5955i51x6hvrf16n1z0dfh10mmpaaswn2d2mv"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.2.0"; sha256="0ndzpzripibx38nk40xpz4xkghhr4an3skqdhfh8479jk2fnfwjd"; depends=[data_table GenomicRanges httr IRanges jsonlite lazyeval magrittr readr xml2]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.30.3"; sha256="010vn8hlwbnw12pd1d8pv6m12yp3xwx557gba5rbjq9p4qypnn3z"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RMySQL RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.14.0"; sha256="0r0wmrs5jycf1kckhnc2sgjmp336srlcjdkpbb1ymm7kazdd0s9n"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.12.0"; sha256="0f0ki2zsaxg6f4qr47xgyhxm6jvms0s1zab7f0vcnw8jd7vhmnzn"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.30.3"; sha256="07cszc9ri94nzk4dffwnsj247ih6pchnrzrvnb0q4dkk33gwy8n1"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="1.2.2"; sha256="0g6i90vn29pasiqbq0088bgdisr356539z94scv7cila968inh7n"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.12.0"; sha256="0962l9204vm5x7vcqzlvlgblhdczwp4zbq4i262gqh79lnx4yq1y"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - Genominator = derive2 { name="Genominator"; version="1.32.0"; sha256="1gh56xyfgx5f8rb0wbpvkg8h2q1ci2qf3ngkg3sficn65pbj9iha"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; - Glimma = derive2 { name="Glimma"; version="1.6.0"; sha256="19640crf4pivalivakk22llr9z505d5iq09fnlj4cj6fnga7abzq"; depends=[Biobase edgeR jsonlite S4Vectors]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="3.46.0"; sha256="16bhrkrz24hwxv0py4xiv043z1gxlak3qvdrdmc8pw7swv52hv9w"; depends=[annotate AnnotationDbi corpcor globaltest]; }; - GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.0.0"; sha256="1z3p1xyj45hapvy765akxf88ll9fzsjnprc1g8cv9a9fdjg7vw36"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; - GraphAT = derive2 { name="GraphAT"; version="1.50.0"; sha256="0hrcz1d4k0g1k8izzk9znwxgr3f6ilv93vswqv3z3sfk5ib3aznr"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.42.0"; sha256="1vq6g4w75wlnq201mc93xmbp80dj9rc3ay7zqcpwr4bjnpmgh53v"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.20.0"; sha256="0g0r6714d0bamq5gwggqkbh9ac23wqjdlp358br7z4gkgixxz8zd"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.10.0"; sha256="17bn80x35nw0ys4n67m8sq3zij5ikasi4fqchx98pn72czl932r4"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="1.16.0"; sha256="03pivwaw41ycpg4iwppg9dn7ina8g98kixwpxhv9nnvkzf3124xp"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.22.3"; sha256="1grjzrjpzkw572pbvpsvdnfkfgwybl0cnjd7nnk2xdr26wnbsi9a"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HCsnip = derive2 { name="HCsnip"; version="1.17.0"; sha256="109svm1nzvf0a6hi9fvg7pzfpdbh44dlp6v0dphqm246gqh2cq22"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.6.0"; sha256="0kcdza41saqv6vlpvqd841awbiwkg84lh0plx6c7fmfgbqv7a0jh"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.12.0"; sha256="0dd1z93pv141q51nvjh6dfgvxw6h9wwdllbvy7s4z5vd43w576s8"; depends=[]; }; - HELP = derive2 { name="HELP"; version="1.36.0"; sha256="0216pwpfi626g49hgz8g2gniixakcdx5yhrw03dy0pn0xp26wnhc"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.50.0"; sha256="10p66m46zqm7dj6ldx8dqrwymaplzrpvbg6yqzyx7llvzar7dil7"; depends=[Biobase]; }; - HIBAG = derive2 { name="HIBAG"; version="1.14.0"; sha256="0kk4bf6q6kk8vm18vy56p075538awfbv310c4241m5j3i7g4pxxl"; depends=[]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.20.0"; sha256="0jhfgshaj5917b24siiik72qaa19w05v5jqa6zj5vi8j02lv7i9g"; depends=[geneplotter IRanges]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.18.0"; sha256="1q1782cky7kh042wfr5h588019jwzm9sw4c9f503hq2gfgb6n3xi"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; - HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.30.0"; sha256="1h75igpbws4hdd2nrnbf8w0rpyfjmbb57m3ja5fir0l4x7lwn1rw"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.8.0"; sha256="0b7j6fbww9336ph4xmw8gvln5b6iy3fmcsx5ggxjln8vdy8ca4yi"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.32.0"; sha256="0bzygl0mk35y6zwixsqxv4k3hdwjj77hia97bdj4bngm1x5qllai"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.6.0"; sha256="17s3kxldvfnk5j20n0csbx967xa4npb5x0wy7whhb6zdk9dw7g6q"; depends=[Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.50.0"; sha256="0jcl49dgb6h3s0yh0ym7sfmsfyc2f3ykvnizp66i18by7fa5va60"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="2.24.0"; sha256="0lil1yfqqga9l6qrgismngvary4495zmi4yk01izpcx29pk8zn6n"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.4.0"; sha256="0pbikr79lh6iij044sy6fw6i2bqigmna4hb806kyihclpm0rs3y2"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.0.0"; sha256="1r25l4q7rpzjhz02ys78a4p8ga3wrd231znk84pp7xgka3xpprv0"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq S4Vectors]; }; - HiTC = derive2 { name="HiTC"; version="1.22.1"; sha256="0da1jw9my2n2gihs31zyn14wwr23d8v2vij39ll7rm6fma3ydfbl"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.9.1"; sha256="1k3l3i8fpfhzsdwrlkyp7k8rpkyg51lx6c776vd8nm4f2nqn7z36"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.36.0"; sha256="1yilvi5pcr0z5h0n0mf7hfrjc7cl44vn6svczlmw57n8pxf8p35g"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.36.0"; sha256="12bwk0lj2s6jgrpwigc4jd80irzxqjwc8smq1dhsm6pj62v0gvlk"; depends=[HilbertVis]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.22.0"; sha256="0lrfqalazszcywv58q1grmxp3dn6yxgi3xmwi53cq5bacizqdq3j"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.6.0"; sha256="14vbi9p3bi09qc0vjnwksfgv5c95ka468c1w5qjj6v99cyj548id"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - IMAS = derive2 { name="IMAS"; version="1.2.0"; sha256="0568llff8d11fykanhy3ja1wbi7hidwixyql8zbi04nfxskpsa6k"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.14.0"; sha256="1aaj9fvp6f8zqwadkms23lghf65rghb729m84rdv4c7q4flb96sy"; depends=[rjson]; }; - INPower = derive2 { name="INPower"; version="1.14.0"; sha256="17d53fa96pqh7xhvhmydrvy00x3dvba6npapc5hngzzlr7pc07bv"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.8.0"; sha256="1v3zyiqc0b5rhbkx7w7r2a7m88jgafp84vsgrs9wi8fhs8mvyvd1"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; }; - IONiseR = derive2 { name="IONiseR"; version="2.2.0"; sha256="1qrdgm94xpm075nlgv9zklm7pwfbfjj2d45lv0gs11qj4xi8rccx"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.4.1"; sha256="0bskznr2w1pfanxfnffg1gdjvwii3wkpsgmz96pjxa23yw1ykpgp"; depends=[BiocParallel CAMERA rsm xcms]; }; - IPPD = derive2 { name="IPPD"; version="1.26.0"; sha256="0s2xl5k9sr8kqqn9hbi0kbqmn4xm78fnsqg7g82w69ah3v7myl1f"; depends=[bitops digest MASS Matrix XML]; }; - IRanges = derive2 { name="IRanges"; version="2.12.0"; sha256="1vqczb9wlxsmpwpqig6j1dmiblcfpq6mgnq8qwzcrvddm4cp47m5"; depends=[BiocGenerics S4Vectors]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.6.0"; sha256="02xl3a9pdwdyjm0iyza43b26bvvpxz13z30kbwv4g3h7w5q3szvr"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.38.0"; sha256="047s6q6l2zv3d01hw0qxxshq69cvz8d6cq631n5r6i4bp2pnay32"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="1.98.0"; sha256="1ngijwnx07i7i0pj72dz6c6kims0n5cjcs75yaw5dfwl00xn9p2a"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.2.0"; sha256="1ndpyikxf4z4p7xmmpbd4h7mv9pcdjds0ziwvzi55r486065i2z1"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.50.0"; sha256="19aidmg2f7ij1zak8cxy4y8y1dbhgb17y87zkw8829zh2diz04hm"; depends=[survival]; }; - IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.22.0"; sha256="0dxrylxdyi22x7bsdv70rkwi3j6q0gyddhx48d9f84dsi51zimz4"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; - IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.26.0"; sha256="19y4xjj5fakyf7mdc33r9lygayq4clgm03410iw3si5vy2ib720l"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.12.0"; sha256="1ihfxp4dngwk72nxw36w15d28cpz4y0qxagap4km76i51c9jm855"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - Imetagene = derive2 { name="Imetagene"; version="1.8.0"; sha256="1xgdwp5xvl57xll1i691c0fqnj5rp53l86my3wvbxwd9jdj6rz6v"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.6.2"; sha256="14ad6ar2pprisahv433w20whpnrssr0hfsm59d6m3bkwaff4hb8h"; depends=[Biobase data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore reshape2 rjson Rlabkey rmarkdown scales]; }; - ImpulseDE = derive2 { name="ImpulseDE"; version="1.4.0"; sha256="04l1rkpmk682af5yw9whj8ngq788kmzf7p76paayb6ihamhkcfq1"; depends=[amap boot]; }; - ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.2.0"; sha256="11gr6ycg46ywkrwrnarn5a582nq8x47mhlg140d7fw2wiy20b8ln"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; }; - InPAS = derive2 { name="InPAS"; version="1.10.0"; sha256="1svpjpkqv8va2mrf3b366rqbiwy73jf5rxc32md4arjprs1kb13v"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; - IntEREst = derive2 { name="IntEREst"; version="1.2.2"; sha256="1ck2kmb25wf6rw97mag8l99g05mwaxs2lhpv1722inqq24q0smmq"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterMineR = derive2 { name="InterMineR"; version="1.0.0"; sha256="0gb493spb89c4qz1s9ng9g8w136zcqdnq0rlpqqw3bxdpqck83fb"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.6.0"; sha256="1wmp4dqxj19dbd97r6zfzv81j06vh9j7bpypcxib8f2lyx26cwm9"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.0.0"; sha256="096503aaiznkcpxksxjq95lfb6pcbdvimns8ahc56vr6m5nqnpfx"; depends=[FGNet igraph knitr]; }; - IrisSpatialFeatures = derive2 { name="IrisSpatialFeatures"; version="1.2.0"; sha256="0glx0p5qjfs2fk48qcdi7w14iyj0chk1plv5r69c8iyyc4frd7xk"; depends=[data_table dplyr ggplot2 gplots magrittr RColorBrewer Rcpp SpatialTools spatstat tibble tiff]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.14.0"; sha256="085clvn2wgqicvmd2c0h9ah59l6bwy0l6y8lq69ajy7il1grm4qq"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.0.0"; sha256="0bb3y3r26kwgx84lhr52fyrk9i2jjwhnarr3wdxpyj4j00w2dq1f"; depends=[Biostrings BSgenome cummeRbund DBI DRIMSeq edgeR GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges plyr RColorBrewer reshape2 rtracklayer spliceR tximport VennDiagram]; }; - JASPAR2018 = derive2 { name="JASPAR2018"; version="1.0.0"; sha256="0kx6bfcmp9a0rka0pgpl7lsaw79imcd6zrpgzqg5l1031vlyplc4"; depends=[]; }; - JunctionSeq = derive2 { name="JunctionSeq"; version="1.8.0"; sha256="01db6xpmci0kldwi2x8xfmsbi4iywghcz8spd5601dd03cnmxxrk"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; - KCsmart = derive2 { name="KCsmart"; version="2.36.0"; sha256="0a1flc9bm4w0rfy3jf8fim7c0ddy9zjln0kgyyi3ps7n4rk4n75q"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.18.1"; sha256="02gwmm79djj55a90dzc80hlgwc6bafl7xd7fnx2q59pk945k3z9c"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.38.0"; sha256="028icymxshg4v80b5xhvpdqm87qxi9s6yycp2z5w55mhw8l22azw"; depends=[graph XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.4.0"; sha256="17l8hd072052hd8wfnxj06455qdgdx2bk456rl8ga6bjqbn0r4nq"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KEGGprofile = derive2 { name="KEGGprofile"; version="1.20.0"; sha256="0kd5wpnqpp9r1fy12islaj09qfnvkdf705rmapbzly47abqsziad"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png RCurl TeachingDemos XML]; }; - LBE = derive2 { name="LBE"; version="1.46.0"; sha256="0706nydzjl61ycnvck4xmpfk5x3pa2kllfivyxcjajhwlb4zr6r0"; depends=[]; }; - LEA = derive2 { name="LEA"; version="2.0.0"; sha256="1h1x2z2mamlvb4cf7541b1f7jh25i4lfhjm0nl5sfr1la1dmgsdn"; depends=[]; }; - LINC = derive2 { name="LINC"; version="1.6.0"; sha256="0jlbrcpmsk360mrqdfknkbc6zl87f7fxssd9hf2dp8fqkl3g1sfd"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; }; - LMGene = derive2 { name="LMGene"; version="2.34.0"; sha256="1nvv7dmpxgkwg9js3dzy09863bmm5xm068dmr1sl9jbjmx4lwwn0"; depends=[affy Biobase multtest survival]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.4.0"; sha256="1svy7mav82rq60bw3akriinb9kfbj02ysl1kcnhvdqicdb3ms5x4"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.8.0"; sha256="0wkgibvrh8ddqqbms7id8yqi4ic0nf1ppdjxzg86xafglzz8m26d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.52.0"; sha256="10fm0p1khfypgghn4zp9w6bxc78mwvs39vcvhvpyrppr5xfqbn4c"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.38.0"; sha256="10h0mja8zz5cys8aa07vsp58h178bs66izwh0i6jc5b44hcdxrd2"; depends=[LPE]; }; - LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.28.0"; sha256="093ndks9sx81q0hw6y5nz3dfb9w1adi0g3h6jqk5bl7h41lnrldw"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; - LedPred = derive2 { name="LedPred"; version="1.12.0"; sha256="1lhl6gkya72d4h0v32y3jpaz69g0l7n3v8ahgsz6dil84m4ksc8w"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - Linnorm = derive2 { name="Linnorm"; version="2.2.0"; sha256="0a1zly4shxmq51zjdrmr7hsvmyaqs1xnhrisq93z4djrxq0paj0v"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.32.0"; sha256="0l175s1376wlkb0lva2xafq8p5n3011ldqm3dqcnhkb8mxfqkn4f"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - Logolas = derive2 { name="Logolas"; version="1.2.0"; sha256="12syxp90dam9094xfgjvb820p14hgxx2xj08di9an12kb6h5s13b"; depends=[]; }; - LowMACA = derive2 { name="LowMACA"; version="1.10.0"; sha256="1qn60nrjr9aiw44wyp0q0qhsjm8hl3rzlc8wi6g9k3jaq2jq4v41"; depends=[BiocParallel Biostrings cgdsr data_table LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.6.0"; sha256="1zh7wzw49nz3sf58m8rqi0dkgi9h9zff8jpdc4065pgjwg05r39s"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.0.0"; sha256="0d25abzyq74g7faqyig4rpg963wbb39p9n420hdwrr7scbyij0v3"; depends=[cluster doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer]; }; - M3D = derive2 { name="M3D"; version="1.12.0"; sha256="1w3bxwl19xrs3aigbzqa9n3v5yz6f7216ngyyilwhplnivq1k7zl"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; }; - M3Drop = derive2 { name="M3Drop"; version="1.4.0"; sha256="12s0nzih42gsr57532z0nmn6gccq40hfazsfqbl97w681ngfnk94"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.4.1"; sha256="0yc0ad7idb404ccw89w2lrqcfr9fdjlg876l8wsar6xgq7pa0lhd"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM zlibbioc]; }; - MAIT = derive2 { name="MAIT"; version="1.12.0"; sha256="1l90yy6m2x83bka9222wcyim005pvpimja7ipj9f1bizymd5ivls"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.50.0"; sha256="039msah06ga9vxk2i4qm7kv5lsxrmfr0ws9mdmh0bw6kv7l61wsr"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.4.1"; sha256="0waqz85gzyv09cjf4shz9dydazh0knczylh8854icn1i87x5sjsj"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr reshape2 S4Vectors stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.12.0"; sha256="1ys9m3g2c93wck6cj5n0vcdzca7f4qcxgc14zhabbs4pv70qc8mf"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.12.0"; sha256="1h2hb4lbs1p101zd6k5xpp5ashib9iqrgkp2afdj0v4s8v9f2h09"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.32.0"; sha256="0amqmzi54dvkgzylavy0dbv973s2p02jppd5vzqzkrqs8amb3r4c"; depends=[preprocessCore tcltk2]; }; - MBttest = derive2 { name="MBttest"; version="1.5.0"; sha256="0gswdh61mmqn7h4d6vwvis08lxx383ynj6pk2va3z8bn25qki5lz"; depends=[gplots gtools]; }; - MCRestimate = derive2 { name="MCRestimate"; version="2.34.0"; sha256="1n4abpm6ld4ap87pgrv3mfr1aycdjb4hjg3fm699rckyl9qynjr3"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.2.2"; sha256="0xll7qdg8cf854yzwxmzvd8xh0pjzkq9x9fskcsv7brm25ar6ghv"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MEAL = derive2 { name="MEAL"; version="1.8.0"; sha256="0mccjr21jvmwlszhb9qixm7dr83gkhm2hjh9yrn11d22cm9r6g1q"; depends=[Biobase BiocGenerics DMRcate doParallel GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SNPassoc snpStats SummarizedExperiment vegan]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.30.0"; sha256="06mm424g3rc8j64wfyv6w40m106wifzhi91nsbpi317fg98qfd3d"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.38.0"; sha256="137p9z1g3z4r7q3nsrpsp2gbm657nrbrrq96ph1mykvv41ylq59p"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.12.0"; sha256="05ww7an7vk67rjcf31g9aq033w6yhx9dagrhj3ki5ks7hcwig1yv"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.12.0"; sha256="0yjr14anr5rny6g1508nrw905d4b01jh34vpwi8737p1q4d9bzis"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.4.0"; sha256="04nxg65m1s8qyq8sbs8733d541r0vcmabz27w03vs87f0dbxhg11"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.2.0"; sha256="0ih5i1acb7igbcqk7wykxhncvl5vbgx34gl5nqc65adpqb0199fl"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase limma matrixStats mGSZ org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.16.1"; sha256="1fsjpqpv32ps8pyj1mjkhrpikchhmm3l06yyjqy3bgrfa1ch36vx"; depends=[Biobase coda data_table Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; - MIRA = derive2 { name="MIRA"; version="1.0.1"; sha256="0dapp1q6vrdixz8n2g6ivav4d4si3wg1na7cg5jirb22mwi2rrpk"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.58.1"; sha256="0hran4cavh1zlzwjwpmmd13qsx95z7kf8pqmh7w1pb36isj2z3hy"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.26.0"; sha256="0mhaw39rbzrnrminvsiq6vrdrmf3zm2zqg3ilnsq1zw8bm2bsbh7"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; - MLSeq = derive2 { name="MLSeq"; version="1.18.0"; sha256="1r6b33ic2lnj3v2qzs7r904rfyibz96yr35mgpiz4zzsax4ar6v4"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.6.0"; sha256="13f96dw630hadqa0z83ispdni728g7zl12xj8zxrf5hvw1c1hs2h"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MODA = derive2 { name="MODA"; version="1.4.0"; sha256="1baxma9g4ir24fxwxgm3hphvv8j521wgmvy86fcl2rai6ayy8liy"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MPFE = derive2 { name="MPFE"; version="1.14.0"; sha256="0jh1s0skaw16d94149hisjnfn2hk6z7hdd4ishzwziqbwag60z0w"; depends=[]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.12.0"; sha256="1yr1m12svmcx7y1524j8dw91rf0gn28gs9hy7gan88lnjv4hlnh9"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.12.0"; sha256="1xpzcmvlk394sqwl2lx8ihhgsnrfifpkrbh79b7lwwjzijr37npv"; depends=[mzID ProtGenerics]; }; - MSnID = derive2 { name="MSnID"; version="1.12.1"; sha256="1zw508kk4f8brg69674wp18gqkpx2kpya5f6x9cl3qng7v4h5pxx"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; - MSnbase = derive2 { name="MSnbase"; version="2.4.2"; sha256="1ig64bf881p118dwqfr0ry41m7yhnyv165smv8fdwfv7sb6sagif"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="3.10.6"; sha256="03a9069zv0m8m28a9rh53m12rhgrc299frhqiwl1jj6b82myv5hp"; depends=[broom data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm MSnbase preprocessCore purrr Rcpp reshape2 snow stringr survival tidyr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="1.0.0"; sha256="1987j8l5q6cyyg8wpyv1mgv5s3qwdxvdb2c2qhl5svaksxlni2hi"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; }; - MVCClass = derive2 { name="MVCClass"; version="1.52.0"; sha256="03ym7qlybs99ir629h9mmm2kqpmx1lzliql7qgbfiydpynvplahy"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.2.0"; sha256="0pgb6qnqqzz6y22cbxivx04v0rak76i2kc3aasdrz324xjv5hq09"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.48.0"; sha256="0jnj6cyvpk41pi9f021wgqjnrns3xcixa7gbnqaa83gv8zrm2d8n"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.30.0"; sha256="113d6hkzx4gn2n58ljm6awfzyjzvsa7q4rhybnfqv9rfh93q1iin"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.44.0"; sha256="1q0m4s4f7pajkc99aijaskcd4qg50w98bllsr89154vnrcaszhz0"; depends=[waveslim]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.10.0"; sha256="07msw0h3mgn9l8kdc1zzijxy62dfawrxx8rd2xw6djammb9gl1p5"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.2.0"; sha256="0a5jsm0rrxw0il17bysjy7inzf7ay9lrzi1kyxifl4k64j8ssj3r"; depends=[EBImage]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.14.0"; sha256="10ir9ma04cwn2kbd10anv4yqljh5p60lq53da8191psv82ni9cfx"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.50.0"; sha256="0gky9yhd7k0w83ysnjjy21m8wwjg5k5y85ba19bc1k8412x5alj8"; depends=[]; }; - MergeMaid = derive2 { name="MergeMaid"; version="2.50.0"; sha256="0bsjrm6wm732saw07l2y4mmbsdgxk5b4x74zsjjv4k92dbfbwraa"; depends=[Biobase MASS survival]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.6.0"; sha256="1m2d2clg3mj8m365zcivqdn81ira83m69cxr1s4syrl1a2cymkz6"; depends=[]; }; - MetCirc = derive2 { name="MetCirc"; version="1.6.0"; sha256="106anz431236gn0himc273h9w721wk6l9gmkilydviflb0x990j3"; depends=[amap circlize scales shiny]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.4.0"; sha256="036j7mnfgvra1ryzqiw7mpsavc0akmalryswq6n9z02gmns5sij1"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - Metab = derive2 { name="Metab"; version="1.12.0"; sha256="0gnpdhvzhqs3ajdj439x2wr3b3yzx5qgb6brlw9hxz63l4fpipn7"; depends=[pander svDialogs xcms]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.8.0"; sha256="0qydccfbyys8gfalzcadx0hiljq2ias5qphwsdxglh1xlqkh2919"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.6.0"; sha256="0m442v7akv5r274hx56r6vkcsg4ha897ira4mbkiqfsrxscmajh2"; depends=[Biobase randomForest]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.10.0"; sha256="14xd5h6pgla2kh1l1rn7x2ddal98ypazqr120kyifqf05y5sf1ph"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.12.0"; sha256="1km22cscxkgyx6blbsrnh5q8pj7fmw5caqnj72bzi76zw8mr0fli"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.8.0"; sha256="0dbsmkiidc83hncqkw4g1kz7dwdr631s4a3a982v7krfsgvcqwyi"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.18.0"; sha256="0d1ya2jbgqk9s4clpsaipm4l9585ycxg5bmhg4dmmcph0w6dcsjl"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.38.0"; sha256="18c83g8ydbb24v1n0rcp3lv533ikhs6wwchvmdbsy2whlsy3sv1i"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.32.0"; sha256="1jbwri284jzjaxml4ddz4kcmhhz48naqiydj4ixc85hk3gpjglaa"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.50.0"; sha256="1kdi0m4856dsal6qx458x35ybnaj960ys83dgg5w4c8420k9mv9m"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.20.0"; sha256="1jbs427vpld18l83s5dngijc8rgllqvrili8gv4in20nr6dyk9hi"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; }; - MineICA = derive2 { name="MineICA"; version="1.18.0"; sha256="1zdq5i14ksm8rirbry6j1dh56r1bhy5yvfzrxfjkm94lynqcdpdy"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.22.0"; sha256="1j2g0ji1ac9608b965rr9vvbhlcbvirqypngh11havh3vn54m9rf"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - Mirsynergy = derive2 { name="Mirsynergy"; version="1.14.1"; sha256="09hg5mak0ba0vifix5s0nq7md4hjldmar23jyxz5da1lp22cza9i"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; - MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.28.0"; sha256="058nvymnnzd61a7x2vpzic1s2nm3q520cnfdhd6i09isg6kqr6c8"; depends=[Biobase lattice limma statmod vsn xtable]; }; - MoPS = derive2 { name="MoPS"; version="1.12.0"; sha256="0g4awrm90kjnk66b291y2n5vwwwzpdb3kaq96sxfc5a1af8q5q81"; depends=[Biobase]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.4.0"; sha256="0kisic6bzp2gy1yjg717izbkirlvrwb1wndckd2yvncrjzpidcq6"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - MotIV = derive2 { name="MotIV"; version="1.34.0"; sha256="0lvkzbw328mxyp2pd95ymi1nbk78jx880h00jxwdf17a5rkikgh6"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.20.0"; sha256="16gk7sbrk188kv3mdsnvcnfzvd2dyxm7wmmwvcqz560x0xn0l0k9"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors splitstackshape]; }; - Mulcom = derive2 { name="Mulcom"; version="1.28.0"; sha256="1dh4sn64n1db2hlbx58mb49kmfassr1r92d9lphzzqhsicq78p8c"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.4.9"; sha256="0kbr2nfxkny9y6hgijr2xpzczs0ijv0g7nh37yrzgkh10rwjsflq"; depends=[Biobase BiocGenerics GenomicRanges IRanges reshape2 S4Vectors shiny shinydashboard SummarizedExperiment tidyr]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.6.0"; sha256="0h187dkqn63m6askai30x31va24hiv4ig0kxvp9xraz7n9zfr24g"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="1.12.0"; sha256="1b48iv34bnsbyg7j70kwi8iyikc1hxlcfmaxsc97249dfq71rfab"; depends=[]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.4.3"; sha256="0ml4gsp5dfv23xqrknxh25q8q65hly1xb1215lcwyc8hj9z8f941"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.2.0"; sha256="0npzbgbpwir4jv8h4giar9w8vjy3rivk55bimqd9bq7m83iwqapq"; depends=[baseline BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.26.0"; sha256="094dnqj1gss4dh8hsc8y9k98b0g33n7yy714kjavcd16glp4w7i0"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NGScopy = derive2 { name="NGScopy"; version="1.12.0"; sha256="1aibq3rbs52vyhcx388p7szax7v8ac023pxayqmn2xq3kzj172ah"; depends=[changepoint rbamtools Xmisc]; }; - NOISeq = derive2 { name="NOISeq"; version="2.22.1"; sha256="0v04597hwvr4y96789samj6jpgipsdv15hsmkgs3pdli48cjwff3"; depends=[Biobase Matrix]; }; - NTW = derive2 { name="NTW"; version="1.28.0"; sha256="0gkj636fmr519hylb3kc70qxmx9cw3xim0vpx60qsr0kl6h5m7hq"; depends=[mvtnorm]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.9.2"; sha256="1ss7q5zbqnkrv8fds2x3amjva5v8y8x4b5h1flh5paivdpv29frk"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.10.0"; sha256="0r5yf2vgn0182074fa46ziclx9dbm60j4n7yck66ck81xp0jpwps"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.22.0"; sha256="1ai2fdckd2d383bnwwpp60yz3f67gm8xnxqm74ah8gpn3ll9dxm8"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.14.0"; sha256="1dcpayafvarf8brd3rh9ik6ki5z2fqqzwxpxdjm5bwfb7l3ida3w"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.18.0"; sha256="05m6i3gcyvc9hzmfpj9wzim9b8p5lgv984y6805nrszr7dmhlyjv"; depends=[graph igraph seriation]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.24.0"; sha256="0js03x4gqrqs0pv9m5ih34zrxgc8vcv3dil17wzgfimrm044z0yl"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="1.28.0"; sha256="1z5pgdi8l40yvbixsgajd2afyi2mkqvxgx0v4k3xxqw1w97kmrgv"; depends=[]; }; - OCplus = derive2 { name="OCplus"; version="1.52.0"; sha256="1fxfc66b8qmcq0yq1n1z7fj5d8hw0z59b3sdypdhhyw5ddcri0lf"; depends=[akima multtest]; }; - OGSA = derive2 { name="OGSA"; version="1.8.0"; sha256="1i6xh0y9ymxrdjywm8sayb7jgiyqgmz66wd94ja4f2na4xsw9gps"; depends=[Biobase gplots limma]; }; - OLIN = derive2 { name="OLIN"; version="1.56.0"; sha256="18b4hadkz1zp79ing1nd9z9456a9l6wk8is6gmzj6dbbs4g1pypc"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.52.0"; sha256="115irlwwfzf7ywgbry2jwxl1h8hp6mlr9b36q509ah5c7kn58r1r"; depends=[marray OLIN tkWidgets widgetTools]; }; - OPWeight = derive2 { name="OPWeight"; version="1.0.0"; sha256="18crhxdlxixv1qp8vc5f711g1sxwhixpd5h0vb6jr9rkyq2v942b"; depends=[MASS qvalue tibble]; }; - OSAT = derive2 { name="OSAT"; version="1.26.0"; sha256="0nc79hh2vbqh864c9zac1pbghgx1fbq7maz4dxwl02hhpxj0187d"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.28.0"; sha256="019c8d2dfhf2q9zq0xgj0pakymyk48ssbqnags4hhfp684af61r6"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.16.0"; sha256="13dw36n0lg5cafsrgkgr65al6y7jij2clyf1wzidn05p508i02m3"; depends=[GenomicRanges]; }; - OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.10.0"; sha256="0s7zyj3xkr74w0jw604hv3v775kqjpdgks4gkkrkfa3a1xj7xa5b"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; - Onassis = derive2 { name="Onassis"; version="1.0.1"; sha256="11sq6f3qcq37i4blml024kb24ifcq1xplklv2i9c55wg299ni620"; depends=[AnnotationDbi data_table GEOmetadb OnassisJavaLibs rJava RSQLite SRAdb]; }; - OncoScore = derive2 { name="OncoScore"; version="1.6.2"; sha256="0lv3rx92fslikv79cpib839wbhj7v3ad869n50frqylyp6kn5nyg"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="2.8.0"; sha256="1b0myymp38j6fbd4y8ppwmsj8v9w96g8wayc20bcygm16i1zjm5k"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph nem RColorBrewer Rcpp Rgraphviz smatr]; }; - OperaMate = derive2 { name="OperaMate"; version="1.9.0"; sha256="11ah55sl04gm8hq3gkcz3b4shq4dxdpwlwl0wn4j82ciai0k6wsm"; depends=[fBasics ggplot2 gProfileR gridExtra pheatmap reshape2 stabledist]; }; - OrderedList = derive2 { name="OrderedList"; version="1.50.0"; sha256="1sk9ni3vyixb3vwn86vz174lfd7n7rnc8jmm1fx94pjsp9r6sbgr"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.6.2"; sha256="12gvdrn843334f665dqqjmlny4f6nyaql4h1181q8gfpnrc6kqwp"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.20.0"; sha256="0yxvhwn0m53wfwp0zi81x96argdf7cf1lpymc2as51apvfcnjdl8"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.8.0"; sha256="02j7a9yifnsl3acrwgn83f12rf9xf6lgrhl28cp9p0zhr5ljf306"; depends=[BiocParallel cluster EBSeq testthat]; }; - OutlierD = derive2 { name="OutlierD"; version="1.42.0"; sha256="1n34110czydhff8lkhfkd0hb1xcjka5a0wnvzb3wiyaiaihca26y"; depends=[Biobase quantreg]; }; - PAA = derive2 { name="PAA"; version="1.12.0"; sha256="186gfkz9pm0bdd3zr5cnb8qzj4fqkdcrch1bmny8iwsidi3kcxph"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.20.0"; sha256="1lp8j2phh7f0vs6w7dc6w1lbfalqhb4ymfg5n4qci8lpzs52rm75"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; - PANR = derive2 { name="PANR"; version="1.24.0"; sha256="0qvivfnydj4abva5r0yy3p1q4db70z8yjrzzm3ryvjal8hvrdh39"; depends=[igraph MASS pvclust RedeR]; }; - PAPi = derive2 { name="PAPi"; version="1.18.0"; sha256="1flyf97qpffl9aa1sf7q4c62npk6j3jdvh3va5m0816iwq21nm9r"; depends=[KEGGREST svDialogs]; }; - PAnnBuilder = derive2 { name="PAnnBuilder"; version="1.42.0"; sha256="144s1lzb83rb7g809v582jc0xhsw0gsy2n5wdmsd2bi3j4i8kb2q"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - PCAN = derive2 { name="PCAN"; version="1.6.0"; sha256="0inm1kfi9xvd3jhqivxh4vzc6vsijh1z7fwzsqb35rlbi2cl7snd"; depends=[BiocParallel]; }; - PCpheno = derive2 { name="PCpheno"; version="1.40.0"; sha256="1sgw116qif7w52va7qg8n51a40nvmhybvgr5nxlvgvrwylkhqfai"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; - PECA = derive2 { name="PECA"; version="1.14.0"; sha256="1c3nbsvng951fsg9vk3yki215f3abgsxqhd025gyvs120nw4c9kv"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PGA = derive2 { name="PGA"; version="1.8.1"; sha256="14lm4ab7lib80wmkim4j72n4msmbx7nhlbv349cxrpc9k0dxmycm"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; - PGSEA = derive2 { name="PGSEA"; version="1.52.0"; sha256="1g0kfhrvq8hv4lpwq3p3p6fkm2bmfjmkfw9312jrwnbjj0hfwd34"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; - PICS = derive2 { name="PICS"; version="2.22.0"; sha256="0jb4hzswiyrqpnazfpd6wd11gdlmv18za7fyr4slxv0rc9rkf8qm"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - PING = derive2 { name="PING"; version="2.22.0"; sha256="1lvbl3g2m643nypc0nfmhjpfv4zl7qk457kg9i7y7l1lzqwqsk0s"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.38.0"; sha256="1w8njdkvhs7y5j78d3y591202811sb8dsldf23yiyfihbjv61vzv"; depends=[Biobase LPE MASS]; }; - POST = derive2 { name="POST"; version="1.2.0"; sha256="1j96hqyhznq419xvvs9kkhppr6nfp0p95r5xz979pbvf8qhzypqx"; depends=[Biobase CompQuadForm GSEABase Matrix survival]; }; - PPInfer = derive2 { name="PPInfer"; version="1.5.1"; sha256="16c9ysal2v9vr54jkg0xcmrmf58l4p6qv61fmp3qxm89r833hry9"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.24.0"; sha256="09wwd4q4d2nzjwvnv0anaz3hhcykdaccnqc1azn56lqdajlgqzfz"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.30.0"; sha256="0vc847sd638xm6f7n2b77sik9kqq9kxnmmms3qy06sbkynb0rk7h"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.10.0"; sha256="0k7lpwqyflaifgs6aac55cichlf2za76gjfdijgp3f1vzvs2qn57"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.0.0"; sha256="1zscpjnjazw1m0bsq5x685h0pag68ddw6x0f5h99z6h06206xzki"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.54.0"; sha256="1x7hdbdhrbpp3qp6b604fiw13rid6dh57j9wgl0v3ligf84siv1q"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.12.0"; sha256="16l7g49vd4j06gr9lzny663md872nhdpzpsnx3niaqmd28izm9p7"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.16.4"; sha256="073lg2g1bixyiigdkixndcn29dhaznwh6v7v6ibq10h7qc5gl7k5"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.14.0"; sha256="1aw0v9s5xy3gjsyhy04zm8xgsrv4a1n4j02zspyz6rf1acakishg"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; - PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.6.1"; sha256="1xh8p2q5znlwqcwas75kiy2fpz4va1y074z1c69p3h8h1xkivkzc"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.8.0"; sha256="0mzrnq3caq2nz6lckb7gbc87kq4l4nlywy2iwwjvdn6yzsxl2hb3"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.18.0"; sha256="1rvm44y7fcf3mqy9c3hb5vx53b3xad20znbhkm4fqwgdb74dxyfv"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.4.1"; sha256="1al0h4mw5lsmn4n3d76d8p9px62l4y5c5z78md2zchnam3x9ii78"; depends=[alluvial ape BatchQC BiocStyle corpcor DESeq2 dplyr DT edgeR ggplot2 gtools knitr limma matrixStats MCMCpack pander phyloseq plyr preprocessCore rentrez reshape2 rmarkdown scales shiny tidyr XML]; }; - PathwaySplice = derive2 { name="PathwaySplice"; version="1.0.0"; sha256="1yi302xjf355xi14vx5rl6qyrm35qz9llf48fwrj7ycb41vla0fj"; depends=[AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; - Pbase = derive2 { name="Pbase"; version="0.18.0"; sha256="17ya1mmz8dqrr81vcfy3ygw490bwg26xkj72mcmba17cyy0nv11x"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel biomaRt Biostrings cleaver ensembldb GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="1.8.3"; sha256="1lax2naj6qcjp4fy640m9pflvi2y1aqbsh5m9j2mpphy6a1dlvmh"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; }; - PhenStat = derive2 { name="PhenStat"; version="2.14.0"; sha256="1hjj1i083ihi7c1lc1rrh3k7513xcqpybn3aaivdjw66pi1bg7vp"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - Pi = derive2 { name="Pi"; version="1.6.2"; sha256="0x3b5cs7r4cjvjjc2gx7xapzlkvg56784aj04zg6271hldpcd84j"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex XGR]; }; - Pigengene = derive2 { name="Pigengene"; version="1.4.20"; sha256="13pzgzls2k48h31h25n2rw028n97xaxfxlb4dq49ndwy5874cbzb"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; - Polyfit = derive2 { name="Polyfit"; version="1.12.0"; sha256="1gkn6g5hwa8ss156armxam9ky5fd7dj0k3gh1b0gy5plpzzyzv1h"; depends=[DESeq]; }; - Prize = derive2 { name="Prize"; version="1.8.0"; sha256="1vaf4n69pb2sa6fd79988picz08d3c46cjmxfr5qf7hxay9lbwc6"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; - ProCoNA = derive2 { name="ProCoNA"; version="1.16.0"; sha256="06jlzcr9b6nfrlgb1wqxp7r2z8042ygjx4d2z7jzg07hqn3gymjz"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; - Prostar = derive2 { name="Prostar"; version="1.10.5"; sha256="1z9qli85if894j6s4a21yq6990hamz3ql1399m2wjjzka3w8kd29"; depends=[DAPAR DAPARdata data_table DT highcharter htmlwidgets rhandsontable shiny shinyAce shinyjs webshot]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.10.0"; sha256="16ijp50448wnabp43klx943rhdvh7x45hvy7cnpq1s4dckxhhyni"; depends=[]; }; - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.8.0"; sha256="1myd5gqr3nmbp6f1n7ilp6qjcfgm401frm4ldvxbjyppxh6m1wh5"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; - PureCN = derive2 { name="PureCN"; version="1.8.1"; sha256="12wpqwz771vzz5yad67d9j1jhgi5ccxngyqcjcddqwsiws65prwc"; depends=[BiocGenerics Biostrings data_table DNAcopy edgeR futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma RColorBrewer Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.12.0"; sha256="1piws8xrq40qk3dkhci01wrcz4nz11rp8j2kf8rxvm9bsf2wxhk5"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.14.0"; sha256="0lgbv4s0xqgrs7q6ynb3c273sf7pyrp51jnc8ravq1z5g0a2zshy"; depends=[Biobase BiocParallel CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QUALIFIER = derive2 { name="QUALIFIER"; version="1.22.0"; sha256="1lp9b3g1nlfdvd8iaryrs6314fc2rpqcdfvbr92sb114yd0kj6qp"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; - QUBIC = derive2 { name="QUBIC"; version="1.6.4"; sha256="0sncmd1xrph5hd9y7sj53943cdf6fvhami4l8qd13qr5ikf07v0l"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.10.0"; sha256="1l7bljgqwsawn1naq62mcvp50fh5mhwc3qxxi7r6dy25v05ji4gr"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.18.0"; sha256="0z87i7drfz1ssqwh27w4bhclf2k6i5bhjbfmn646pjb6qb6cvxia"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.6.0"; sha256="15i1lnc0k317ccvk7xdqq4hfqxip49lv0yvlkygf4xwa9g3z1vjl"; depends=[dplyr Rcpp rlist]; }; - R3CPET = derive2 { name="R3CPET"; version="1.10.0"; sha256="1cfb32rykza8h9v2h75674lhapykm3s6cym0c513mmr69vdbmqva"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.28.1"; sha256="1vqv4gywwird0a55qw6c9pq67jml4f8pa28zrf04gim1mgalzfyl"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.6.0"; sha256="0qxzqf8gjmblh9xlra8554fmr59gkpiq6pa8q9xmi5y56pgpzcqv"; depends=[Biostrings]; }; - RBGL = derive2 { name="RBGL"; version="1.54.0"; sha256="18jad23i3899ypv4bg3l47cvvs3qnj1pqis2p9x0135yv5y6wnv7"; depends=[graph]; }; - RBM = derive2 { name="RBM"; version="1.10.0"; sha256="1nqmf9yiaam767f2wkwggnw6v0rymszx7chnkis0xbdsllzqb0j4"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.38.0"; sha256="01qk9ddk8bm9sl70rlwgmrkz2y7dnqzrhi13hhh0ii62s0z0gdwh"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.4.4"; sha256="0jnrikh0qhpxgjc6rdgfj9d57x4i5b40wxx7lfafrxdxg60qsy1g"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DBI DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo knitr motifRG org_Hs_eg_db pbapply pheatmap plotly plotrix proxy rmarkdown RSQLite rtracklayer S4Vectors topGO]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.24.0"; sha256="1v19pv81q0g965mks88ablznzhcdk3kfd7j2dgxx4r12bl1afawg"; depends=[]; }; - RCy3 = derive2 { name="RCy3"; version="1.8.0"; sha256="09p66zxh82j5pcjz1zn3cg43rpsp0gnkwja836m6g1i450zrialv"; depends=[graph httr RCurl RJSONIO]; }; - RCyjs = derive2 { name="RCyjs"; version="1.10.0"; sha256="0vlyh32byw49j3vfw0avknixflpjs5h599xxlbf2zc6irvncg1wg"; depends=[base64enc BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; }; - RCytoscape = derive2 { name="RCytoscape"; version="1.27.1"; sha256="1ai82y181bfckq8lqs1vsax2n1jwd5krz3x4b5ys56y3qjdqrgxy"; depends=[BiocGenerics graph]; }; - RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.16.0"; sha256="1fzv1qn7jkz0zcvj2n7ijf7z40pjp9myhxfffpafwrvbrn4qg0wg"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.28.0"; sha256="0sm13v95m5b9jr451kbc4bichw6bhxlphxzaavkbvqh8qdv1l83q"; depends=[MASS rgl]; }; - REDseq = derive2 { name="REDseq"; version="1.24.0"; sha256="1k5d7s67gd4bjp6y6xjjplkjr7kv69iia11npmdwda743agkmyb7"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.2.5"; sha256="1vpx4jzh8yyjpiqw4jr4chhha5dg4p2pwjza4mfbnpkzjbdy9ssr"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; }; - RGSEA = derive2 { name="RGSEA"; version="1.12.0"; sha256="1w63gc0pqgc2ran4a5pd4qxmcj9mx9hxy4has6jbar66pa6q4sfw"; depends=[BiocGenerics]; }; - RGalaxy = derive2 { name="RGalaxy"; version="1.22.0"; sha256="1cd5my1jzhlijshd4mh5zc7gsv5jic08i1ydmysjh760q97fg99v"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.6.0"; sha256="0shrvxsm452yrd7x36m31fkmwry55jagfvqpd7hzssj0imkg521w"; depends=[digest graph rjson whisker]; }; - RIPSeeker = derive2 { name="RIPSeeker"; version="1.18.0"; sha256="0bqkzwrncww7il36273chkd3gfxmii7p566ycki9qij419pwr35y"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - RITAN = derive2 { name="RITAN"; version="1.2.0"; sha256="199kddc19fwkfgqnbhx7v4sl5h6lj6f3wqs5xy9f9n9bg09f5rrf"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png ProNet RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.2.0"; sha256="00j9i0hrn0j2i5rxgsax3ixj8pwm2ks9fyvp657yd5amm1vackxq"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.7.2"; sha256="0h3r7q7lfl4z7srmallaldljv2231j3zhxy0d4x9q7ghcfglfnbf"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.2.0"; sha256="0xjscfbxrrfnd40dmzhrrly0v3pk1k33jdl4z19bslh89gmrmygr"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.40.0"; sha256="01mbk00fbhzldivxlr5jfy1fgfrdbd657lya3s3p7zxw7z0054a0"; depends=[MASS]; }; - RMassBank = derive2 { name="RMassBank"; version="2.6.0"; sha256="1yfnj64ybl95a7bc4980i5h6cvs2hq3nkmj9dklarcp9wfw5p59w"; depends=[Biobase digest MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.18.0"; sha256="08x58sd6q5xm47ix2f1kkqpgyk10nnbf994i4m1wia8fjhx0hdkm"; depends=[]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.26.0"; sha256="1cscf2izpx924ai0vian9mm528mn1k618zqscss7mry13ik78p3c"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAither = derive2 { name="RNAither"; version="2.26.1"; sha256="0fs3kab20h77d00kg48rdgslj3fsmnl73qi740sa7xmwx6ra5lc7"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; - RNAprobR = derive2 { name="RNAprobR"; version="1.10.0"; sha256="0lq0cf5g004w2gi8rs29rhdy3p49njmwnw5jhfijfj4hgkgc6caf"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr Rsamtools rtracklayer S4Vectors]; }; - ROC = derive2 { name="ROC"; version="1.54.0"; sha256="0a60k93q0zsmj2s4gy9wgzpd5yl9xdv2g62m18z4s4dmr3ykwsdv"; depends=[]; }; - ROTS = derive2 { name="ROTS"; version="1.6.0"; sha256="12dqbwqiiz21im45iqf41nm25anf0fffip86glpydwwc0km054jh"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.6.0"; sha256="0lxxqa8syanb9v4nzc93arlwg65zyf4hkgxgw6q4h62mxkabdp0d"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.34.0"; sha256="1s5d8wpy3n69f9lnsi8avwalbzzvi7v8np6bv3vcnxy3nfx0iqx3"; depends=[affy BiocGenerics phyloseq]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.0.2"; sha256="14hs5mam4yjcm00zqz5fgmgxzwhw45fniaihch2mwrb6kbys2y68"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.18.0"; sha256="1nz643k6bahg1bizw5bgjkpv2hd7hpi87s4kh1z38jqfpfixw9lk"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.18.0"; sha256="0f2fv2cxwhsl6gvz3dpgk55faymdwxyry6lr3l6f2s8f6rqpnzgf"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RTCA = derive2 { name="RTCA"; version="1.30.0"; sha256="0y2vrqfr4qjgsq8f82a5xnfhm835wi5zqf1xlxrv4mpxm9f9jr38"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.8.0"; sha256="1x4kms2f7zskxqskzdi9q8adwxyi1w42kn5mj1skhgihdk5ai3b6"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.8.0"; sha256="0r3j9ky44gfpm1qz95la23j93khd00rcg6nz20dkvrfzsdqkixah"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges httr IRanges limma plyr RaggedExperiment RCircos RCurl RJSONIO S4Vectors SummarizedExperiment survival XML]; }; - RTN = derive2 { name="RTN"; version="2.2.0"; sha256="0h7dd0zn7fiy22ab65fh47vi5j312r6rc8c43zh4f7c3cx3ls53s"; depends=[car data_table igraph IRanges limma minet RedeR S4Vectors snow]; }; - RTNduals = derive2 { name="RTNduals"; version="1.2.0"; sha256="055milw62gndj13z0gpzi5f9zjxsnhdg8rvfm5msiyivay2ms7ki"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.2.0"; sha256="072hv2b6s9k6s8bp23sq3frq8h5wx2kr4jz1j2kyih17psa5kpkb"; depends=[png RColorBrewer RTN RTNduals survival]; }; - RTopper = derive2 { name="RTopper"; version="1.24.0"; sha256="18ncjfwm1rsxrxz32n5z1a88rn0z8hlrksxlm9ninhl4igas0661"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.12.0"; sha256="0hkvj1gb11ci2ywqbqdfydx9pm0wchja2lbwkqjvw2svqmc9clww"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.10.0"; sha256="0nhpz89x4z4dgdxynrxbpdaxbhnxk86ychnmln3vk5b9fp3yj3v2"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.12.0"; sha256="071p0wc0y38j2rvbbqzr6i5i2rvmmxdc3yj2fggvlbwbq2k4dfpx"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.0.0"; sha256="1m0w3cp5395sh43b05kc7067wyvmqlq6kiczp0b868392bhaq8hs"; depends=[gRain kinship2 snpStats]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.2.5"; sha256="05zl433y8bagqvf1672zjdwxlp39g2f3qmv12xycrmgz5gs43d53"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - RamiGO = derive2 { name="RamiGO"; version="1.23.0"; sha256="0dmr58masqca38z412lh2kfi1g498ifyz8bwy7kbk6ybjhxvklmv"; depends=[graph gsubfn igraph png RCurl RCytoscape]; }; - RankProd = derive2 { name="RankProd"; version="3.4.0"; sha256="186aadri7p4fnf76cjgi2r1ic51dicks5alfw4hzx0dzi2hyy606"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.6.0"; sha256="1c1miqsrvf89dygg8m2axdq995axylhhdyi1gvig368l17vvcgsp"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - Rariant = derive2 { name="Rariant"; version="1.14.0"; sha256="1kfw2gfvdgzi5ldarmmwnksgg256vfaripcridlsb2pgwzay52k4"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.46.0"; sha256="0qj8zvhq9cq3akdl6zpspvvz9jlvc0lxrn4ap7qd984406jihyg4"; depends=[Biobase graph rpart]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.18.0"; sha256="0v3x9i6wmps7x0zpvgimzfwarg4246nbk4cpa1kim46r5jkl5m4v"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="1.0.2"; sha256="1cc2z55qzp3psnhii0d71dmb71d0s3wzl8dsyxyxcr95clp4irsi"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.20.0"; sha256="0awsdg6wfm6hykj96s8cgz2mhn2i4jl1yabg7xfj0nmd776gv5fa"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - Rchemcpp = derive2 { name="Rchemcpp"; version="2.16.0"; sha256="1k5rgk944x0xy0y7l4fba1gfbiq6vnpbgmwwm520vv061v9g72nz"; depends=[ChemmineR Rcpp]; }; - RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.18.0"; sha256="0lghahggrh3142rn9f2rnh517740d62bh7rc97zd2sjk3rfdb761"; depends=[flowType graph Rgraphviz sfsmisc]; }; - Rcpi = derive2 { name="Rcpi"; version="1.14.1"; sha256="1g19arw0j0h02mfvlcilhy305ksy25x8y6v4qyvfbbspj9nccn0l"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; - Rdisop = derive2 { name="Rdisop"; version="1.38.0"; sha256="1s77iw418g5fchpjl590cn97yhpcp9rhynwnckiqpyyyd8bg31i4"; depends=[Rcpp RcppClassic]; }; - ReQON = derive2 { name="ReQON"; version="1.24.0"; sha256="0fsg0y2kxzkcfa6yv79w4swnw3ymjw3rbzw458a39npmavxvl08l"; depends=[rJava Rsamtools seqbias]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.22.0"; sha256="0zckjs3w0pvk64g2wf5awc6npd43irv7ac38c5v3jy13lh0p4kc2"; depends=[AnnotationDbi DOSE graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.24.0"; sha256="1aapiyx6qx8bcx6qvr9ljg0nin2dnxlpvsm3n935d2riq94ah492"; depends=[affy Biobase]; }; - RedeR = derive2 { name="RedeR"; version="1.26.0"; sha256="03gf09mawc8ps8bx32vh2xgwqhha6gb9cm9yz1g78650mj7sanxc"; depends=[igraph]; }; - RefNet = derive2 { name="RefNet"; version="1.14.0"; sha256="1ssqj0jym17pawi3vh4y38fqj1sv59sq1sb4dsvlhkcf7c8lp33d"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; - RefPlus = derive2 { name="RefPlus"; version="1.48.0"; sha256="0px6s5r72s1yscvy2k7fkgliy86z1wq7q8yfc0yjj8kj9qyi0wmy"; depends=[affy affyPLM Biobase preprocessCore]; }; - Repitools = derive2 { name="Repitools"; version="1.24.0"; sha256="1aynhawn0fssm0haqqm7y22q8sky7an5gdnixalr7yykrnyy9wia"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.17.3"; sha256="0r0dp3s87q2706rqck2120bmq9nnmbfkxf8yyrm2i4zvkpay18yd"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.22.0"; sha256="1y9nyjffa9644jch0p2i3w302fmnyc2kb0c3z1f3d5zp1p4qmyqv"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.0.0"; sha256="0kkc4rprjbqn2wvbx4d49kk9l91vihccxbl4843qr1wqk6v33r1w"; depends=[]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.10.0"; sha256="1dw3p44bfr0m7w39ckc2k37sjcp1zz0b9g12mr8am15jaj6v0q2j"; depends=[zlibbioc]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.7.2"; sha256="0yygf098phiakaj8c74c337gbwpd0dh4haabbg2qq1k0qjw4prmp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.42.1"; sha256="12r4bcn2sivcp68rd7jr4w4a8yz7xdydwx6bv1mi2lp2s2mzf5c5"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.20.0"; sha256="10ypbd9qwh1rk27fwm8naf3gl05w9zlw79qyr55pk5m6x5lnn9cb"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.34.0"; sha256="1hvv8pps0q7xnsl33rammqvyj191j5gs78r2333jgscxnw4byqb7"; depends=[Biobase e1071 kernlab pamr]; }; - RmiR = derive2 { name="RmiR"; version="1.34.0"; sha256="10n8i7qirbd8xrb73ccxyj7c6bi1szx263nwjh8w2j9x4dgzx22x"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; - RnBeads = derive2 { name="RnBeads"; version="1.10.8"; sha256="1kawb781y7pscbmll69pzk4gnb0xz3s8llj3icy3c8y0arkg98xz"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqGeneEdgeRQL = derive2 { name="RnaSeqGeneEdgeRQL"; version="1.1.0"; sha256="06i2fy89wck0jhpc174d81ka7jim8gjamjk0ym1j0fh3ldiw9yvm"; depends=[edgeR GO_db gplots org_Mm_eg_db]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.10.0"; sha256="1r0bn121bf5fcp4im4hm2c6rccgf7fb1vvxj2iri8ippc2k60d2c"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; - Rnits = derive2 { name="Rnits"; version="1.12.0"; sha256="00ddzbjms9wpiinc021s4b50wbzdafnml96ngsmi7rd8ipr3k3vp"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - Roleswitch = derive2 { name="Roleswitch"; version="1.16.0"; sha256="1jp55lkfwwx08rbdkp5324ziwn5b3pzrcidk18zpplgwn4c6jsk9"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.20.0"; sha256="0svh7fdl957q47jqc5q8sysvghs5anhj61r3zcapikbbi19x8j4i"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.12.0"; sha256="11l72jympxbb156llifc5qa1zx34774b0waqq3nyv351bqm2l5c8"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="1.30.0"; sha256="0pjny5fjvbnfdyhl3bwxin678sha2drvs00sivxh3l772cn6yams"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="1.28.1"; sha256="1fvk88jmvx987hifj3j6lrvwpma66vqmvszphgsfvy6nq4j2wnr0"; depends=[]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.40.0"; sha256="1h7frl1zgkzvrfjzdc6l2xybhp68pizdi7vix012m3imfs97sj25"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.16.0"; sha256="03s8vz33nl6mivjb7dbvj702dkypi340lji1sjban03fyyls0hw0"; depends=[BiocGenerics]; }; - SAGx = derive2 { name="SAGx"; version="1.52.0"; sha256="1fjyhs3isbzp4fk460gk4xfqs62ha9vra8blzbkng3r86axarlgd"; depends=[Biobase multtest]; }; - SANTA = derive2 { name="SANTA"; version="2.16.0"; sha256="12l03j2vh74n8lbvdr436qylaxhj3ysqg0m7crl9l30kpzg4agcv"; depends=[igraph Matrix snow]; }; - SBMLR = derive2 { name="SBMLR"; version="1.74.0"; sha256="0l2c0irfk50kiz22w8gzzsanh3dv5bpqrzfy1ba6bw5ghs066j65"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.7.7"; sha256="1x9x450qnaw94px9b861zyxyyfxxbclw1bq765adfixgrlakyw1w"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.20.0"; sha256="1fgkrr6303b0hn9rdkry3rd7yskqanmxy74akxgk4nkjwf817rra"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCnorm = derive2 { name="SCnorm"; version="1.0.0"; sha256="0vpwca5gbhdm1g1xsb9451z2cvqr9c85z79whq011d52adz5fmr6"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SummarizedExperiment]; }; - SELEX = derive2 { name="SELEX"; version="1.10.0"; sha256="0f81sa0azbh7n7vg39865pv923k2sza7md713g5fkn78vrx5q645"; depends=[Biostrings rJava]; }; - SEPA = derive2 { name="SEPA"; version="1.8.0"; sha256="0g0gqwgsn8bp9mz40dbqb4f785mhwcmb5y4jsgj16i5pv0ll59a7"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; - SGSeq = derive2 { name="SGSeq"; version="1.12.0"; sha256="0wbwyr4nckjkafc1h80a0isz27lyg87r42ym4zs6nmpj0p3xv94q"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SICtools = derive2 { name="SICtools"; version="1.8.0"; sha256="0n3m3435wa95mld4b57hr31rfhlk41yw1qqi1jdnybkqgdndpqf8"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.48.0"; sha256="1n207w5idd2v515v8ppsfx7q1wvn2zxy6if7dp2hpr0x2qvxijnf"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.10.0"; sha256="0gd99p8kjf1wn0xygdyppxgddp9bnp3a3grg8za2mmm8xv5r990h"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMLR = derive2 { name="SIMLR"; version="1.4.1"; sha256="09siwqc57f0rfx0297hk2jbpvvayhk47wkvapz2ap621ya203b0z"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.8.0"; sha256="18v8fw3l4pxh4fi18fhnqxbd1hlhp2w36s31vf58ffldq3bz1bpb"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLGI = derive2 { name="SLGI"; version="1.38.0"; sha256="1p0lwzmzz820npnsw9sk6x12innc39qv0ja0di7rplkmsi60z92j"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.44.0"; sha256="16kvssib1j4d5cn3b350ip2m9m7fcsgm1mgq13wbfnwcd6sx52kb"; depends=[]; }; - SMAP = derive2 { name="SMAP"; version="1.42.0"; sha256="0n2f1qib0k9rxdizmrazxp2wnf6ycaz90b0vzszvakawc9np36dq"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.6.0"; sha256="1s5gsgf878996hvd15gbjas7lyxlsw7s4xxcpcmgnlzq1dxyq0ma"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.18.0"; sha256="0315x8dl21i9zysp55nmjikha9fxykw8lzba4bk7gf0bc0947i26"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.12.2"; sha256="05x0jjybzkyvjc9sq590hg2lc6fjxqmnlvgvwc0d7pyri5pa4rki"; depends=[gdsfmt]; }; - SNPchip = derive2 { name="SNPchip"; version="2.24.0"; sha256="1z0708rqn9h9ajmdqv44y2yl0gqqg9gy1h5yj3wzjpj4dgy5d4l0"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.4.1"; sha256="083i242x2a133wgpbi6plw7hs426b4qsgl7792akr0fm965mnna5"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.8.0"; sha256="082fwmzdjwgn2x33isi81a05l557367ham162li3q76g2jfcmh7r"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SPEM = derive2 { name="SPEM"; version="1.18.0"; sha256="05gpj1fykiw8xjcbd6splqkb8jsyksnhzl6g6pzinpbczhslq55a"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.30.0"; sha256="0m2vv6zj0vgd98w2jrlbwbyn998ml2i2wr9160gmq5h77rn91xq3"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.4.0"; sha256="06xamivcwlpwj6n8c3wzgd5ykh21q2mrdl7zz1bnicq5npha99l9"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges plyr S4Vectors seqLogo]; }; - SPONGE = derive2 { name="SPONGE"; version="1.0.3"; sha256="1jb7nwji4j9kvnx40hr26qhcn3pbmjaahl4cpvqbljs9pmi9lfdy"; depends=[bigmemory Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; - SQUADD = derive2 { name="SQUADD"; version="1.28.0"; sha256="1z139p0xbaq4gvd9acxnd8dlapdsiaab1fj10pc7wx2iz4dj9zd6"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.40.0"; sha256="18aayqid2fhhkjf7anlk34qw3fj3byxsxcrw2lmq4s4mqq06k5vh"; depends=[GEOquery graph RCurl RSQLite]; }; - SRGnet = derive2 { name="SRGnet"; version="1.4.0"; sha256="1a2as38svd6vp6pdllir4gs6jqicg7n7ya42ffjgiy2rpnyijbci"; depends=[DMwR EBcoexpress gbm Hmisc igraph limma MASS matrixStats pvclust]; }; - SSPA = derive2 { name="SSPA"; version="2.18.0"; sha256="0dq4j299yjg5wq40f3qdm8hi0vv6zg1d04hml1rw25s1ws2pngyj"; depends=[lattice limma qvalue]; }; - STAN = derive2 { name="STAN"; version="2.6.0"; sha256="09aal6p3sdbvcp6dkrj533x3m1qxxrkgsk35j9idz643vv133xjp"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.12.0"; sha256="08k2chi5cgpj2xxi16jzc3prsp3qpwwq0f4wrqzd9rwj6f9afwk5"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="1.18.0"; sha256="0hrhjx4cpl2zp2chgyw0ayadsv8g1nnarn7gyxni76ci4wayh7bf"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.2.0"; sha256="06g2p52mgc3f9hzyqcjbcfvk28fx6ynf3c9gbwvchibjaiqdy1sh"; depends=[Biobase BiocParallel cluster matrixStats]; }; - SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.4.0"; sha256="190r34lir810hla9wp3pwl3w2yvw5x532988vyvjzl49wdhq535n"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; - SVM2CRM = derive2 { name="SVM2CRM"; version="1.10.0"; sha256="0v4qgs4bmi44i36pm5y7bdkjiwj853738j8f7rxzqnp3y8nbbwjn"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.8.1"; sha256="1hd4gxb2p81v2d9x4zw0asfm7r9s0wq2flnpl9g7r9fxm2yfi339"; depends=[data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.32.0"; sha256="0n1pjpgdsisq4zv9dny3bfzjz3ga1cibh2gmm5irplfxgpcdlnqa"; depends=[]; }; - ScISI = derive2 { name="ScISI"; version="1.50.0"; sha256="0ssyx32bcaz40yr9iraczk9p53ymia4m8nfsmzxzr804fyz8hnvw"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; - Scale4C = derive2 { name="Scale4C"; version="1.0.0"; sha256="035fyjswn23s6az36j5b94b1aj31n6yb5w243bqqwvqrl2kqhkdv"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - SemDist = derive2 { name="SemDist"; version="1.12.0"; sha256="1h3ld34h61sx228ix68sg86y3w9mzh3iq1gdri0lbixvhzx9w25b"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.18.2"; sha256="05w051i63af4akr6zna9w14bdyi06bpif0vab9yvf6iwq2ag72kz"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.18.0"; sha256="1vaqa6jkvwxpbqnz9wz3i6p26mky6d7d704cjv5as67j04v99b2a"; depends=[Biobase biomaRt DESeq doParallel]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.0.0"; sha256="0qj1y9zsjxkh08jkw80hl62072viincq1pvcz9r3i0m28nhk7pg5"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.16.1"; sha256="0vjgksqyapvkdbnl3af0sjbbraslyc6m7f63sl05m87zdkav8fzz"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf S4Vectors SeqArray tidyr]; }; - ShortRead = derive2 { name="ShortRead"; version="1.36.1"; sha256="1cyv47632m9ljkxfsvnvmd19sb607ys5kz8fwh6v39dnw16g0a6m"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.10.0"; sha256="1k2xmb7jcjbdxafr8fspf9pbc0jwcll914lqc42gvhhjq6rnf8q4"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.16.0"; sha256="0ddy6bayb05gsgh06p5awhjwyx57z0l8fb5x6p0dci2fgzy6gr4f"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.16.0"; sha256="0jkd78wl5ksm05qjmsx7s8aznh3kfpi34yvxaxv763pqjqzkxa82"; depends=[Biobase limma mclust Ringo]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.0.0"; sha256="1r276i97w64a5vdlg6952gkj7bls909p42zl8fn8yz87cdwyaars"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.14.0"; sha256="107ykkkfy4xpvaflqpsbxkbw5514pxkicffpr24p3x5lj5zp6b8h"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.16.0"; sha256="1dc8z66kzn6lxrc2xz3kyl7fjxy0i0gvjgxc9w3fqvdhkxqp7k6n"; depends=[iPAC]; }; - SpeCond = derive2 { name="SpeCond"; version="1.32.0"; sha256="1k54zxj224fshnx76hsjxkwaj9vb6387ssgpr0v3zgnf7p4zf4sx"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.8.2"; sha256="144rfrp55cbcqjnlv93mannfvk33wrxw2sxf5yabs75y2hvi63ri"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.18.0"; sha256="1pvi2vc5jca4mpangyfllbh5h16015kmcdrwhs32a25wp0fpqhq3"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.4.0"; sha256="137y50vxz2jd8lmb7zx3f25by0imzvarimrpfxg7v6marcgpd3nj"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; }; - Starr = derive2 { name="Starr"; version="1.34.0"; sha256="0wqcp98v2isy2bnq3qyf5v5lzy19kap2i6qbi9d5mlaxqjrq5afq"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; - Streamer = derive2 { name="Streamer"; version="1.24.0"; sha256="1bmjvg2lb9qmh0fffgkw4wpmjv5rg9iwqhmxz30ciiw8vw6xcklq"; depends=[BiocGenerics graph RBGL]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.8.1"; sha256="19vlwnby83fqjrilsxvnvgz0gvby7mrxvlmx18nb3p1w591ddfjh"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; - Sushi = derive2 { name="Sushi"; version="1.16.0"; sha256="0axaqm480z8d0b2ldgxwm0swava1p4irc62bpl17p2k8k78g687g"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.0.0"; sha256="1v8mil305503cpspwk9zln3csv2f1h72afjdddpzks9didq5i3xf"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SwimR = derive2 { name="SwimR"; version="1.16.0"; sha256="033hh3bpkn6qladvn7iz0fvrbphffzy1rkvmi0j32v9n9h88lizz"; depends=[gplots heatmap_plus R2HTML signal]; }; - TCC = derive2 { name="TCC"; version="1.18.0"; sha256="10nmha786k85jr93vbnlsxkrr2wiykxa5rl2z5ry49w14fis82m5"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.6.12"; sha256="0pih8jpzffsjlhamfpvgcapa48dq2m86f4hxqr5m5z4vgjd7j1mv"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble XML xml2]; }; - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.4.7"; sha256="1hwq13rsynxv18pzahq54107n2dm0wgbh7a5xizda4zqgf4s50gj"; depends=[clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks]; }; - TCseq = derive2 { name="TCseq"; version="1.2.0"; sha256="07wbp4caw18g1mf5h40i1c1y7jadfqmx3p7a8zz5rjjibsfa2bw1"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.28.0"; sha256="0agzpgz39ya46kgnz95ff2h0hml2mb14fb3pdj218adas24zq9jf"; depends=[Biobase GenKern Rgraphviz]; }; - TEQC = derive2 { name="TEQC"; version="3.18.0"; sha256="0rnqlk677hcf2w3whc9gdqm21gjqf4rsanaw8a847jc7li8isnpj"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.0.0"; sha256="050hpw7xaw7di6m9lgb1ac6cnp3lcv4f9l9d9r3rm1i42q51l8gs"; depends=[arules fields GenomicRanges stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.16.0"; sha256="0sivvbqmw5psciyzm5dyyjq9bpcvnhxz8kxis3zgkm9mmjgx84hy"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.0.0"; sha256="0kxri2yv12pc9hq55i7qcjlk64p7w0i9kgbf2im2rzlbdb8xc3cm"; depends=[GenomicRanges IRanges S4Vectors]; }; - TIN = derive2 { name="TIN"; version="1.10.0"; sha256="16lv7k4js3zbak0b1m2mlimd1f56gif3vlm2hpc5vx1y315mz9gd"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.0.1"; sha256="1mv9hv5hjg55mwbp824n5b74w8zcb9sv8a1wa6hxmfb00n6wcr4h"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TPP = derive2 { name="TPP"; version="3.6.0"; sha256="1gma7lfnq1ybcqnl9536wv22advjaqxmysfgamrgn38zwbcwhdi9"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; }; - TRONCO = derive2 { name="TRONCO"; version="2.10.3"; sha256="1kw4j57wri0sm3piinq169pkljfb3ff4vcj1ify2il2pl7va94l4"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TReNA = derive2 { name="TReNA"; version="0.99.10"; sha256="1yiq953w6830v1fba4gglnf485m6lis11qlpp9g1jw0x4s0rpg70"; depends=[DBI doParallel flare foreach GenomicRanges glmnet lassopv randomForest RPostgreSQL RSQLite vbsr]; }; - TSCAN = derive2 { name="TSCAN"; version="1.16.0"; sha256="0m88r5yg46ra8k6ymzfrk68fqbg2y47kshzgj5flblbay079hnxg"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; - TSRchitect = derive2 { name="TSRchitect"; version="1.4.0"; sha256="0qymyjmzpi1n5fpyzw8riz32kwsc2bi1cw3sx9sxvpvhjk45dmyx"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - TSSi = derive2 { name="TSSi"; version="1.24.0"; sha256="03i7nnqnbhjpyx8z8gpwysrgi9ln89pgdqaisyk0cmxrsnpp9wxa"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; - TVTB = derive2 { name="TVTB"; version="1.4.0"; sha256="1p167jjcmsfh2y1wlc5r9j7i4cpdq3kjjnykcq4if737d3xyw15b"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.8.0"; sha256="0xpsjl470sa0kvmi3yz25fx9j657d19cbspxxy9vhpr60wyfahpp"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetScore = derive2 { name="TargetScore"; version="1.16.0"; sha256="1davh5chqz8y94ddpzmnjh79m5678yxjk120bfl7857y888ywhc7"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.34.0"; sha256="03ndkhwzgbr005v6m6wppylcg862nnfb69fgmjm9nfxrp70vviy6"; depends=[ncdf4]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.16.0"; sha256="00xf005mndqx79y8w6c10p02xyshjv0cmd3wxib73d2s1ns482s6"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.0.1"; sha256="110h66824anbgsbw3cp74yzlka1v8wmkz6fhgs3n51iz6qikk6f9"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToPASeq = derive2 { name="ToPASeq"; version="1.11.0"; sha256="1qbx2n8zlmb5gvmy8r91hxli268vbvd4a5blzl2jwa1v3fb09rim"; depends=[AnnotationDbi Biobase clipper DESeq DESeq2 doParallel edgeR fields graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz SummarizedExperiment TeachingDemos]; }; - TransView = derive2 { name="TransView"; version="1.22.0"; sha256="1306l12khnd5xnaimf4rk85nylik4im95f1m56p44rpmhgs33gq6"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.26.0"; sha256="0ayn3my5n78y91sj8z92vxj8s7i8jlhh9nbwqf4b541p5xvbc2sd"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.44.0"; sha256="05q3h91vhbmp9irvsc1mgwkilzqz87wc6cbk78kk979s225fsqis"; depends=[]; }; - UNDO = derive2 { name="UNDO"; version="1.20.0"; sha256="0i0xdc74mmarr57fk15c4iyq9pm2zgic8ini0ldbk1hx5ci3if6x"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.18.0"; sha256="071qmc0jy58wabxwqrv6w4rlg42xj5rzb12ji56a5pdsh1j2nrfw"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="1.6.0"; sha256="05cy9yfw4qb5drxjmisahcca729vdqb6l9qfmrar897bwm2kwb7h"; depends=[BiocParallel DBI R_utils RSQLite stringr WriteXLS]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.40.0"; sha256="14swl2fvi56583zmqsfwd5kxvzdn2xm9rf1b0x0r7nn62hkzdmp2"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.24.5"; sha256="07ywn3c4w83l3sr76d0z3b1nv9icgdh3phsjlc6cfx7i6nfmvxw2"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.14.0"; sha256="1w959g9iyqiijzr8w3xf4i1pb2jjasyvzwrvyhjymn3xgj7hqiab"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.20.0"; sha256="1ma1qs9n606a5gjcm8l9fna8vfg5f8ixdzriwaalhys22pyjgqsy"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - Vega = derive2 { name="Vega"; version="1.26.0"; sha256="1kya7h7xa47d7l3svkpnkwjg49izpjfird5fjja6490ynr1a55yd"; depends=[]; }; - VegaMC = derive2 { name="VegaMC"; version="3.16.0"; sha256="1lmgmaf4andfxv2z4h2pahyggnic5wj61llzkm8q4k0q7i50l63i"; depends=[Biobase biomaRt genoset]; }; - XBSeq = derive2 { name="XBSeq"; version="1.10.0"; sha256="0p2f2wckndgrsf0jjcag22i6bgrn2ky78ngdk9c5cvqnxwjcfagz"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; - XDE = derive2 { name="XDE"; version="2.24.0"; sha256="11g74znfafp03q710mhmzgxap6f7j04b75jhm7x6lmd6cbwqh25p"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; }; - XVector = derive2 { name="XVector"; version="0.18.0"; sha256="1i4i3kdxr78lr1kcxq657p11ybi7kq10c8kyaqyh6gfc8i9rhvmk"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - YAPSA = derive2 { name="YAPSA"; version="1.4.0"; sha256="0jv940xdqrbb8hw13nm6cky767zn9k8wh6sh5vz5b7hgh7c75kww"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.26.0"; sha256="1fvnpk4bqvglqq04mykk7k57f52phmv8b77mn33hd0lli0ym9a90"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.26.0"; sha256="0kj0svm9c7cbrdwm1wqj76jg9vkq34jqqq2b249ss44d17y1cr2s"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.26.0"; sha256="1i14390103kzafbk5ark9n7svw78jm1pkcv4dwwz8q3ibywanyyz"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.26.0"; sha256="1sbg7aaprmkw381y2b3mjw7fsl0p8xy3gciwfysc4f2fxmxcq51y"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.26.0"; sha256="058fjw1l82gmk50kjxsy98zxc22fy1k9cj7bk45dxf5ahzpklg0b"; depends=[AnnotationDbi]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.26.0"; sha256="1v21sqib2rmrgw2ij4vcb4hbiqybbn7b40x65594xygkridaw4vv"; depends=[annaffy xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.56.0"; sha256="0878jpirklqlpl90qwcf6cj3jdiadcywk0ilhbiqcmdxlsf0w549"; depends=[Biobase cluster multtest survival]; }; - acde = derive2 { name="acde"; version="1.8.0"; sha256="0hfby7fdvvj0ip2r27z4c0i6ap18nh08c7gas8vrrrqbznprsqjg"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.48.0"; sha256="13bvql5kd6dz5gpwjyp1b91n8xr4kc9b3sy1m1g184452ccin5na"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; - affxparser = derive2 { name="affxparser"; version="1.50.0"; sha256="1nyzr5277np3dqig4fpnhx6xqsswsrp7rmb6ll6gram47k9l2hf9"; depends=[]; }; - affy = derive2 { name="affy"; version="1.56.0"; sha256="0jmbkimma5ffsdkk3xp03g4lpz84gd95nkqakif2nqq6wmx0syrj"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.36.0"; sha256="17sjgm12y66z22y442mg9dh1b4yivi6cz8gdm49q3szibxgjprv8"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.30.0"; sha256="080z6cavmphrqh4y3cbf2cclzbljl7v2rwrcdsrz3h5pnisf064b"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.54.0"; sha256="04h7wvxcdqkwpywlbwycvm9l5az6z5hqw44s33vcx9xpnhbsw7q8"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affyPara = derive2 { name="affyPara"; version="1.38.0"; sha256="1jb80dlm3zmrfjq60y0gnb8530pma22b6zkd9crlczl120sfiybv"; depends=[affy affyio aplpack snow vsn]; }; - affyQCReport = derive2 { name="affyQCReport"; version="1.56.0"; sha256="0jdhswh8y7fj55k3c4lk9nfr8vqp41mvg0jla1rh7y0qjh0fkv4c"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; - affycomp = derive2 { name="affycomp"; version="1.54.0"; sha256="12ckmzi5z0gxccrycgprvd0hzz52ygryqszgbkxdnnrcwcgbb4x0"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.50.6"; sha256="11d5k4lnpsnm6aa5j3352l4cyfrlhigp2fnykkwkqwc7714a02mg"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.48.0"; sha256="1pzzp3d3dbmyf34gvivfiprkpscn36rgvhrq853a1d3avcwr5ak9"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.52.0"; sha256="1k1wkiajdnkcfrvdmhjgc969hyq7gk53ni2khqcw8jqv9kqqa1r1"; depends=[affy affyio affyPLM BiocGenerics BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; - affypdnn = derive2 { name="affypdnn"; version="1.52.0"; sha256="02js489yb6nni3i7jrl1zz0bm5xs6a47pb6nq72fmh1frwikx37w"; depends=[affy]; }; - agilp = derive2 { name="agilp"; version="3.10.0"; sha256="0yyvmlyxajad1f7fx91bsq3rbwm5i4vyr1vpp6y4vicaxmnlkas3"; depends=[]; }; - alpine = derive2 { name="alpine"; version="1.4.0"; sha256="16ip0pmdxm7bhnnk5z376miwqkl018m6wzdaxls7cszfv04alass"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; - alsace = derive2 { name="alsace"; version="1.14.0"; sha256="08jdjyjxc6r513zlk7nsrnydsg2fxsws77g1wq0gpcgwx8m7s697"; depends=[ALS ptw]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.40.0"; sha256="0fdy1yxgq9rnhgm17ml4wms56fsdmgr5hvqdjmpjslgwjn4922gk"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - ampliQueso = derive2 { name="ampliQueso"; version="1.16.0"; sha256="1d3nyps5pa4s52mwnsqhlm4pddqanns003qggs2qidb5rcbvhd4m"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; - amplican = derive2 { name="amplican"; version="1.0.0"; sha256="1lv0xvfk2spcl23hn005w7c4iyvsbrqgpvc5rbw6nkrxzmay5g16"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggbio ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; }; - anamiR = derive2 { name="anamiR"; version="1.6.1"; sha256="0mxpxangzbvx7rpzm4ak321pcgj6pa0nbslgvh8rplyz4sf6v0z6"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; }; - annaffy = derive2 { name="annaffy"; version="1.50.0"; sha256="0qprkcvq56h6dwcylqsa0dq0nmv5bk280j89cwa3brm4jfncs4hm"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; - annmap = derive2 { name="annmap"; version="1.20.0"; sha256="0q4lcx1j5av5jpn2wmarn7z32clzzdaprvpcagnvv453i11vp5bi"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.56.2"; sha256="0ybg9k1s289h15nj1kp9821i1rsk1gkn8i8blplmk7gsgpbw1f42"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.52.0"; sha256="1kmhgasb26dbq10d4r8wig5pjlbiqcqsa12zpgcsasj8kvpr2gpd"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.4.1"; sha256="10izqb0x92fjpsycsyppvz6yidg8ssix452jfni692na7ih564y9"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges org_Dm_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db readr regioneR reshape2 rtracklayer S4Vectors TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Dmelanogaster_UCSC_dm6_ensGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene TxDb_Rnorvegicus_UCSC_rn5_refGene TxDb_Rnorvegicus_UCSC_rn6_refGene]; }; - anota = derive2 { name="anota"; version="1.26.0"; sha256="1fvr9yvyf0m7m5dnfbzbm29kd1yqq78carv9v7xx60szi30w4lvq"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.0.1"; sha256="0fya2plqvpmypm3jf6mwncpi1ngjsprbnadh7j33wdshr4znhyc3"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.18.0"; sha256="03y6j3y0qvfzwbwzjgjsl5zlqayqj1400gj278m28l70l43ifnyg"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.44.0"; sha256="132j6gm70h8sma82jd566hrih7npa217h5r6kqx4lq5yw3dlqcs1"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.0.3"; sha256="06j68szmxdr9c8qmmlcx85rv1hjl2rk52lagack83cr3q1gd10bj"; depends=[emdbook GenomicRanges SummarizedExperiment]; }; - aroma_light = derive2 { name="aroma.light"; version="3.8.0"; sha256="0crnk6851jwypqr5l5jcbbay0vi5vvdjyisaf6z2d69c39wmr6sc"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.36.0"; sha256="0z35dyc1r4hn8bfmym5yi08s8mi9vn50pn0vvmggphzm25cwyln9"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.56.0"; sha256="14q0a9my42ya21615l46pllcw4dlnmqi8nac0m4iimlpjm0ic7w6"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.34.0"; sha256="1rz3llx2ww5ngp7l2i1y4zxsjb8gsyhz1srs06s0asp49kq88qcv"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; - attract = derive2 { name="attract"; version="1.30.0"; sha256="0af0jiscz7s3i8k6p7ygihb6fflhk57alqmn15b42bcn9a5d31l8"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - bacon = derive2 { name="bacon"; version="1.6.0"; sha256="1i6y1dfmnqv5n5nbhfmq4qvkivd88sfvlypsm4xs4jsb8ij0aq5y"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.10.0"; sha256="10x49g1di4q134k1ialxb992lq3asg8qiib08a125la5yfwr179y"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bamsignals = derive2 { name="bamsignals"; version="1.10.0"; sha256="15id6mkj95skb4kfafvfs2j7ylydal60c3pspcl7llhwpq6vcqvl"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - banocc = derive2 { name="banocc"; version="1.2.0"; sha256="0cc1kx01mpn1gg5ym6lij77zf0canricj0lchvx1vq5as6qazrbh"; depends=[coda mvtnorm rstan stringr]; }; - basecallQC = derive2 { name="basecallQC"; version="1.2.0"; sha256="1kvknsz0s35r5zfc4gn08jzl914l54pbn92cwxbnay598zfg0shz"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - baySeq = derive2 { name="baySeq"; version="2.12.0"; sha256="1d918rmbzqncr7jw6byr3xyqybvcsgcyf96immqcl1c5xvgmqn5z"; depends=[abind edgeR GenomicRanges]; }; - beachmat = derive2 { name="beachmat"; version="1.0.2"; sha256="0b6dzja5fbx4dawb7ixj67mlhw4fy62pfp20mfp918fy96zmdwqz"; depends=[DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; }; - beadarray = derive2 { name="beadarray"; version="2.28.0"; sha256="0azcqszgggcllwpib8vh9zkl393hikc2qfaq9izprpdrnsb5amqi"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.44.0"; sha256="15lr0mavyhnl0vzq4ndw2da6wxsvwrrrmrj9dzj1h8ml305m5r7w"; depends=[Biobase quantsmooth]; }; - bgafun = derive2 { name="bgafun"; version="1.40.0"; sha256="1s3k333y7hxxkblkivi58gpxzd58divi01xv8sqdl2grvw0zj9d4"; depends=[ade4 made4 seqinr]; }; - bgx = derive2 { name="bgx"; version="1.44.0"; sha256="0nbf0nnsv75a3zcwnl82wvg7ysbw8zsjk3zd7s5g61ma710smq07"; depends=[affy Biobase gcrma]; }; - bigmelon = derive2 { name="bigmelon"; version="1.4.0"; sha256="1q8mp765bzj9bb9b25s2qn58z2iyy8956frwa0y8qz19hgg5iyvk"; depends=[Biobase gdsfmt GEOquery methylumi minfi wateRmelon]; }; - bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.26.1"; sha256="17zic27wmdxxrfli0qmi0lggl1kspyk8nh02bbwkyv28ia6j3g9h"; depends=[bigmemory]; }; - bioCancer = derive2 { name="bioCancer"; version="1.6.0"; sha256="1k6ppqr6dpibfk0hf55zz3rd2vfprh9fzmd3wwahx87nd7qj8n6m"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.50.0"; sha256="02y8dlkgjjryy73d04yqyf2aifsrivf5xmcn7i06qfch2w9fbnn9"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.16.0"; sha256="1kzz10nzqgd3zjivnwnr6hwl2gsjvi14aslashvclcym1104vmxl"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.10.1"; sha256="095bkbqbd42bd6gnafwnahm9a9jg0cxa1ndnlx34v9yfwaxnjxk5"; depends=[Biobase broom dplyr tidyr]; }; - biocGraph = derive2 { name="biocGraph"; version="1.40.0"; sha256="11lfiwgwlxp1b1yip4n320v6a31yvc2iy3c6jcq5h50ylc8srdyi"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.46.0"; sha256="09zyqj1kqc089lmh9sliy0acanx9zimcasvp71dsrg2bqm08r1md"; depends=[Biobase graph RBGL RCurl RUnit XML]; }; - biomaRt = derive2 { name="biomaRt"; version="2.34.2"; sha256="1zlgs2zg0lmnk572p55n7m34nkxka8w10x8f2ndssjkffl2csy79"; depends=[AnnotationDbi httr progress RCurl stringr XML]; }; - biomformat = derive2 { name="biomformat"; version="1.6.0"; sha256="0ss70nca7dadhjk0assrj6kqgwxrk9w7sxwynk2cmw8rn4kqiabs"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.18.0"; sha256="05lh0np314zhwd9imwkxfch5mn46964m4ws151x9r51siz262bmb"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.6.0"; sha256="0d6801vvw4778yjq0i5izgazm86h5v6xrfks4qrm3di0yh0nald9"; depends=[Biobase e1071 randomForest ropls]; }; - biosvd = derive2 { name="biosvd"; version="2.14.0"; sha256="0xp032z4c1ws0hh52s67hxv254d6hn4kz9ggrkfwyjq0yby3s0lb"; depends=[Biobase BiocGenerics NMF]; }; - biotmle = derive2 { name="biotmle"; version="1.3.0"; sha256="18012n55swz9grkpdkapklgzbxhqkxbrcc9nika3vvhfpwxi2n8l"; depends=[BiocParallel biotmleData DBI doFuture dplyr future ggplot2 limma magrittr Matrix SummarizedExperiment superheat SuperLearner tmle wesanderson]; }; - biovizBase = derive2 { name="biovizBase"; version="1.26.0"; sha256="14l4vhj0a4ssr9m9zdzz3qpd4qw1mhgq5bmxq7jhrq3j9kmd6i2f"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - birta = derive2 { name="birta"; version="1.22.0"; sha256="1zwdgidcn82z5nnkzjr1p1z2vjl6bsajnisw7kz4w18br11rakwh"; depends=[Biobase limma MASS]; }; - birte = derive2 { name="birte"; version="1.14.0"; sha256="1qlw1a0fd35b68kykvy1x6sr583n7qn88nixddsmkb963xvkksgv"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; - blima = derive2 { name="blima"; version="1.12.0"; sha256="00c3kfs9l9qr2wxj8h3a1x6bngkkz0i8axmmsh2k12jp5b3fk0sx"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bnbc = derive2 { name="bnbc"; version="1.0.0"; sha256="1vy2331idwwlcx243nrx61bns0f9whn21yq25nxs4mn903qy0kyw"; depends=[BiocGenerics EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp S4Vectors SummarizedExperiment sva]; }; - branchpointer = derive2 { name="branchpointer"; version="1.4.0"; sha256="07qjlrdhj2qs65911cmvrd8q9dq077nk00m6vpnwx1fx0n0js6kf"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - bridge = derive2 { name="bridge"; version="1.42.0"; sha256="0axck328cvwzhwlzi500l42x58k09c8zb84zq6hngpwnvlpcyyjk"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.14.0"; sha256="0j6nrb6syhdmyg9s7s8mbvfyagq7khxg7nwdi32w2hcdyp05hkr4"; depends=[Biobase BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit matrixStats permute R_utils S4Vectors scales SummarizedExperiment]; }; - bumphunter = derive2 { name="bumphunter"; version="1.20.0"; sha256="0ag0h0xgja6fyind52hg5bcm482iv8rvwrnj7cfr0la1wndi2slh"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.8.0"; sha256="158jb9665151fm8dm6xs4cxv65wa2h7bn5ixhwqaa893wrlqjnh3"; depends=[bc3net igraph]; }; - canceR = derive2 { name="canceR"; version="1.10.0"; sha256="0sgj40j9p6s14cmbp4gmlmqkjnfqigjilzbijlmfhcrg70ly3sqd"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.22.0"; sha256="07pxb2fsp9b9wa39xdsd5rddw9j9v20ai4hmsmwvm7mi4yr2r5b2"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.12.0"; sha256="11xqxhjlgyk8pnlkscyc1prgvy707w5ls7n1bz1yjgqdg84nbv7m"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.22.0"; sha256="045xwg1h0jjbm4yd0f21c09ha91k6vzhrn3yqzzi4mhb07mpjczx"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.0.2"; sha256="0im83489xpbfppg9l46i6fv19ch41zccrf16gks2nyx64hrhllz3"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; }; - ccmap = derive2 { name="ccmap"; version="1.4.0"; sha256="185bvhmh9806lqd694dcrfl3mhn4k75kwnidsqs8ncqnb865hy01"; depends=[AnnotationDbi BiocInstaller ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.14.0"; sha256="0hpm9gcmc1pdd1rzg5l0jw1xswwqbaajkdnrvrdwbhcvl9jbk5yp"; depends=[infotheo]; }; - cellGrowth = derive2 { name="cellGrowth"; version="1.22.0"; sha256="04cq203ab8yz32pjgh3b8kg7bzljqyjlyqxnfxl9ygk686jj4skm"; depends=[lattice locfit]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.42.0"; sha256="0c004givz5a0x7vxiqb6qz9a27qm53ggy6wwaaxplh9kzqjqszkx"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.8.0"; sha256="1c5mla2kf14c3pc02v16nlnhqmr2dh66l2liirc9myr7mgiqzaa8"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.2.0"; sha256="002af82q6blm65w8ig1sclp42mw6q6j3ag8vfv7zrxwxwxrsg9r3"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.6.0"; sha256="0szsa9q1znj5avyr2i83ih7m5hfq53786l9lmyxgc80mpzskj95s"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellscape = derive2 { name="cellscape"; version="1.2.0"; sha256="066lkswc296vvy0d3fdr2sp1s4s242jmnfj431vrqryvzv7678zm"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - cghMCR = derive2 { name="cghMCR"; version="1.36.0"; sha256="10c6cnm2qbg0gb3klfv1xlwhbzj9x6aimxg7jnz29fgnn3xnd8cs"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - charm = derive2 { name="charm"; version="2.24.0"; sha256="0zr96pwq7zd45lffl67fxvzrxhmjk8pmh8rfawhc7mmazds2ip9a"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; - chimera = derive2 { name="chimera"; version="1.20.0"; sha256="0z50pwynvyx2gc619b7w6chwdb7pxs2gf1ywh9vp7vzghkdv0wx4"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.4.3"; sha256="1jwgra30lqi4zyyda2xcy7zkgnbidlxqfhh48bq8scfym0b34kjf"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph Gviz IRanges org_Hs_eg_db plyr RCircos RColorBrewer readr Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.2.0"; sha256="0q24il68grjqdxpy7qjk6lw6l5zlmw6yybrbrbb8l42gljyi6s74"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.28.0"; sha256="1ymcq77krwjzrkzzcw7i9909cmkqa7c0675z9wzvrrk81hgdssfq"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.42.0"; sha256="0awwk8k7vnsc0c1ic17m2mhmpin0s0ijd2gn7my9yysqzld9sncd"; depends=[survival]; }; - chroGPS = derive2 { name="chroGPS"; version="1.27.3"; sha256="0glqisz3nzlrcvjryxf406dkiq6sg9bg1g3bcqqnmayirm92w5qv"; depends=[Biobase changepoint cluster DPpackage GenomicRanges ICSNP MASS]; }; - chromDraw = derive2 { name="chromDraw"; version="2.8.0"; sha256="1lqrpbf322kxpx5068mw650ibzqksfmxc4j6q1fs4dv0ghpxdcsf"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.6.0"; sha256="16qy1zqwlxc2pdkdb1jf8rknvr5cz2k4vbg2jybr6ks73pzagb47"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.0.2"; sha256="08bp5wyxg5s9gjwnpymcahhy5rar64x385msczam62i1h1y95f8b"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.4.0"; sha256="1ky2z9v6gwwgzvd498ng9ac5s7x8nkgm5170gywr7bgw7lqrycjz"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.0.0"; sha256="1ym7vdj6lfwi4nja38lixm3vsxp296dpb90zwnmabws3dhysxhfy"; depends=[Biobase BiocParallel cluster DescTools dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats mclust NMF rtracklayer S4Vectors tidyr]; }; - cisPath = derive2 { name="cisPath"; version="1.18.0"; sha256="0ya1kkvghs23c4rqydkas68a7y6z16ihjnv8ljjy9h3i7pdani4h"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.16.0"; sha256="1r4iqnyrrjlx1crwy8ai7igkga3114nibqwj22kk364aqpr99jvv"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; - cleaver = derive2 { name="cleaver"; version="1.16.0"; sha256="1zzlmq121xix1hqa0cr7swda15jj4p9b05k8fc3531c6znhfcscp"; depends=[Biostrings IRanges S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.28.0"; sha256="0bzbws6wzvqalhcf7m29fnn01iqyavdgmfrfhhdvhi77253pggqk"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.18.0"; sha256="0mwmqc274hdwsskjianbnyzjk755kqc2s0m91g7rim43hqddgw4a"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.16.0"; sha256="079qgnprgzir8k94kxhq7xvv9hjnwlb7xgagcs71fr0rci0163pb"; depends=[]; }; - clst = derive2 { name="clst"; version="1.26.0"; sha256="1h1dyd42k7m7r5gdf7ddf3c7v27k906xf6cv7nhvdf4d6nac73nw"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.26.0"; sha256="19p0ral4xnf3gq99a0b4fc33fpngjll3pgr6ds3kkk00ynrwc3g6"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.6.0"; sha256="0gfddardn3ib4g2b70jk55hg09vjmwd182m013vnhl476896zpb3"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="1.4.0"; sha256="07mcwjjff86d0jmj70za7j4h7kvs9j34s0z46rk5ivp71nxfnn4w"; depends=[ape cluster dendextend howmany kernlab limma locfdr matrixStats NMF phylobase RColorBrewer RSpectra stringr SummarizedExperiment]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="3.6.0"; sha256="0667k479xc1c8b6gkhnki1z56pvp2v98r3ar4x5gbdv0kg9yby6s"; depends=[AnnotationDbi DOSE ggplot2 GO_db GOSemSim magrittr plyr qvalue rvcheck tidyr]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.2.0"; sha256="1akcknsn89cllfjpb09nr8b3aalfp7bhyd57cs5i327hdjwlbgna"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.50.0"; sha256="0rrzxq8gcxk828lx5kmicrd1qk5xfj0nlzs5233a0x9az5xhrj38"; depends=[Biobase]; }; - cn_farms = derive2 { name="cn.farms"; version="1.26.0"; sha256="001nynrmi568vv82b83jlc9wys8bj5qa6xljj777wdpc48f8swjg"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.24.0"; sha256="157355f5x3wv8p1kdn527yyvgh2zs9rc733f0rldxc9fabrsk4lz"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.22.0"; sha256="0j7xhag1w64kzsmgpl5sz4grqcwffp84azhbx1gy3p83syxh8j4q"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.22.0"; sha256="0h4x9fa3glkrdakwyvzm07zx9w4cp1zrlxz8zhkq9k4j5n2n71c5"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.10.2"; sha256="0ni5vsf1rwz52cmmh7p0kdjgyq295dyh1cyj1jj7jh8i44cghws3"; depends=[biomaRt colortools corrplot GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; }; - coRNAi = derive2 { name="coRNAi"; version="1.25.2"; sha256="0npwxyy3bh8wz8zz94fz76aiiffg4l4lxhnjkz9nsgdn6r8n1ykk"; depends=[cellHTS2 gplots lattice limma locfit MASS]; }; - cobindR = derive2 { name="cobindR"; version="1.16.0"; sha256="06r6wz7kpymdvghinimf2in0sxryyn3lmvdr6cmsnbc5pbzq4brs"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; - codelink = derive2 { name="codelink"; version="1.46.0"; sha256="0j4k5b1bhif0rqqwv5kmqmc9rrgsvs659accimlp1n797raw78ds"; depends=[annotate Biobase BiocGenerics limma]; }; - coexnet = derive2 { name="coexnet"; version="1.0.0"; sha256="12k0pkl4h410dhig9lpvpsbdhlsi5xbcqr981v7298dh7z4rxz4h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; - cogena = derive2 { name="cogena"; version="1.12.0"; sha256="1ngkr5qbjpxi90jfv8nnap11s2vy4wfpd1hiimcn1sf78i3kvpcg"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.12.0"; sha256="0mg02j9z55xq0vwy87kcbv100br88m3bxsbdvrlff46k6gdzj55g"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compcodeR = derive2 { name="compcodeR"; version="1.14.0"; sha256="09q0vk6fb56vf5bnd2jh3c896pr4fihr5ib05ih8f7db052dxbf4"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - consensusOV = derive2 { name="consensusOV"; version="1.0.0"; sha256="0pzb232b5jq9rzy5gk6cf114hid04jdwaqvrn5rzazr1fabrlg5y"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.6.0"; sha256="1565azz566mbc1yvraingqx42830775i21vp74xn9ldaqywaqizd"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.6.0"; sha256="0by6qdmj4hs0mdjh4fia57m6ds50g2xaf5k8wc06w9ws47ryrqcs"; depends=[BH BiocParallel clue cluster colorspace diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.12.0"; sha256="12pa1zf4v3kkpq1k34x45d1nakm3afh9rsc8byz53j3w97wdwpy4"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.54.0"; sha256="0h74byyd87kd3hr902y4n93lvrq07p8iwkzcmj9m4pbpnmlpahi4"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.46.0"; sha256="0aamwvm0qq4dsr14glzlnhqx90ljh820rgh5r4gppww5q040dw75"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.18.0"; sha256="01kcwzl485yjrkgyg8117b1il957ss0v6rq4bbxf4ksd5fzcjmyx"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - coseq = derive2 { name="coseq"; version="1.2.0"; sha256="1jw6xmw32q6jdy8ypircd5q9grllh9bsgq0ga6n4a9qbv23syd9p"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 gridExtra HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.12.0"; sha256="1g51zbi73hmc2nacai46if123kxlc1wdax0nq9ixipmyrqby74xm"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - covEB = derive2 { name="covEB"; version="1.4.0"; sha256="0wgimjzzysms0ccpaay36w5ad9pw1ip8imb2hxv4a86913agk1xv"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.4.0"; sha256="0813fb4yr4ya5rp1lx2av7c6svpsdp7m6aq8rddxp9qbrcqpjz7v"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.10.0"; sha256="1akyp9fdyi6sa9sf1c8rw43alvfx3dkdhqp1mifd6dz6q6030wd8"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.24.0"; sha256="1iw4a3f3hysbhgilv424yvglq0rj9vyryd0riq0ifzmg9dhim11n"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.4.1"; sha256="1n9rl417pqlvcwlmbafw9gbjanxi9dynkcwb3zx8nak6mgy24y5c"; depends=[AnnotationDbi BiocInstaller BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.36.0"; sha256="0i9094kkvxkg3djqvyv2sqfmpvyl5hlcwscas2pmkz6vn2ld1f9s"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.4.0"; sha256="08pj8jnrrpmrq11ljj0szrw985qhgnj42kawah1jg1siry3l2pqb"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocInstaller ccmap data_table doParallel doRNG DT fdrtool foreach GEOquery ggplot2 limma matrixStats metaMA metap miniUI oligo pander plotly RColorBrewer rdrop2 reshape shiny stringr sva]; }; - csaw = derive2 { name="csaw"; version="1.12.0"; sha256="0jw4dncqwf35fg6sf2syj9pwm9wrm0yc9wgichjwrh11ya9zfk49"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - ctc = derive2 { name="ctc"; version="1.52.0"; sha256="0brqh8m0yj7i3794mmrh3bi2mkbhzpg52j7h8qiqyjh7y2l1i3kg"; depends=[amap]; }; - ctsGE = derive2 { name="ctsGE"; version="1.4.0"; sha256="1hxgh559lqa2f80p73mcyz8k6l20hykyk7rmyhi7j9wa21y2mzwv"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.20.0"; sha256="01v920fps6snqpn7gaairq1y76zfjcdya6j9pb9mfw2hkm8gad40"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customProDB = derive2 { name="customProDB"; version="1.18.0"; sha256="0n7rjhvaqcg19qb40i4pwfqv62xzc8gj1y4v0qd9kyff1kh7dkxz"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cycle = derive2 { name="cycle"; version="1.32.0"; sha256="03c3vr0mk5wyb77x3ypxqsaz2x16l9hasnakx3zbf6z8qrx92nss"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.2.1"; sha256="0pxnq8g649ki4697xzydfvqyanzfxjzlcf8lbsnyx46fzqy39zwk"; depends=[Biobase BiocParallel flowCore Rcpp S4Vectors shiny SummarizedExperiment viridis]; }; - cytofkit = derive2 { name="cytofkit"; version="1.10.0"; sha256="08lrnin6jpyjjgkmw2d71zvrsv0al10g28cqjcwwn9m6ax3nkf79"; depends=[Biobase colourpicker destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny shinyFiles vegan VGAM]; }; - cytolib = derive2 { name="cytolib"; version="1.0.1"; sha256="1yyrh5f67qslqsi3pqrw9ffz31sglp7jj5m83mhsjlpk4w20fv7i"; depends=[BH RProtoBufLib]; }; - dSimer = derive2 { name="dSimer"; version="1.4.0"; sha256="1rgmdc4q8vwdph1szzd3gzcdc53pr1w037yc19vgqm16ip2ryhff"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; }; - daMA = derive2 { name="daMA"; version="1.50.0"; sha256="1hqqm4x8w65xv0kdqh14a0mh24p71k934rh8c70bi025rxn3pq76"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.6.0"; sha256="0lcfwh26cy1fpjxq2i5jb60rs4s0jnv8l9cxijqaakbs3xhmzdkr"; depends=[Biostrings data_table ggplot2 Rcpp RcppParallel reshape2 ShortRead]; }; - dagLogo = derive2 { name="dagLogo"; version="1.16.1"; sha256="1bvqpx0bxp4b0vzjf8zhbxphqpf4sggjn10d27pd462qpfg1wkaj"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; - dcGSA = derive2 { name="dcGSA"; version="1.6.0"; sha256="1xi3hx06bd376cfyclpk7crxa8crwkxk276vcssr681w0fhnrk06"; depends=[BiocParallel Matrix]; }; - ddCt = derive2 { name="ddCt"; version="1.34.0"; sha256="0h6s2x9xa5mnvp653pv0qsk3yq7pdvdiqz0321q08hz7ai0r7vdd"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddgraph = derive2 { name="ddgraph"; version="1.21.0"; sha256="09m60a85cyjx4hjxqvp9qz1y2jkqwpafxy95l80xmqygal5d4jc4"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; }; - debrowser = derive2 { name="debrowser"; version="1.6.8"; sha256="11ra9rppy6japi10xy523g7a72cj2zkjb9c9581wy4wrw2kym2rj"; depends=[annotate AnnotationDbi baySeq clusterProfiler d3heatmap DESeq2 DOSE DT edgeR GenomicRanges ggplot2 ggvis googleAuthR gplots igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva V8]; }; - deepSNV = derive2 { name="deepSNV"; version="1.24.0"; sha256="16k8wv495fx5qq1xnv4da9bbkp90jbqklry2zynz1fmfhfxcdmvn"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.18.0"; sha256="1bmm83n8sw16492nzhbh585crzrrwajcfbm2yr8kgbnnv370x3rj"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - derfinder = derive2 { name="derfinder"; version="1.12.6"; sha256="1bp8qw3m5crncwz586b4f4w1x0kcm6r39md3w8il2d9xlvjvmml0"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.12.0"; sha256="06aj2h98vm27pc1laxi7pjxhwxm756scl2r9d8f1x1gsg2aa0k1b"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.12.3"; sha256="1p0pqy2rdd4lmz91gyxwcm1gpnyb89qzy9j9fsm1jy84iaanan40"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="2.6.2"; sha256="18id35mjlwnavqi04lzr47vj6y3j8y8g1rxb6hdc6dklajnvyyln"; depends=[Biobase BiocGenerics ggplot2 Hmisc igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother VIM]; }; - dexus = derive2 { name="dexus"; version="1.18.0"; sha256="1l9x51w1q58zvh53slcmw8rbb2v1sii380acap1frp4idi56wmig"; depends=[BiocGenerics]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.60.0"; sha256="0bfs3n9crca46q0cgkpknl4xf5vc4dr5anly9kn77prb1zp9b0p3"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.10.0"; sha256="0j7vmgpxakzk3gazdy06xhpcqnb19pib0jxfz67nc7fgkyrmhzqi"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - diffloop = derive2 { name="diffloop"; version="1.6.0"; sha256="0gv6wimcdfnbzqi0d5j8af6siqcqgaa7asmkz2nr6lvcicp3b6nc"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; - diffuStats = derive2 { name="diffuStats"; version="0.102.0"; sha256="08dhygy58rr7zb8r2vrrxfdrdcyzdjwmafz0q0y65ay4zxn2s4w0"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.10.0"; sha256="06swg9sz8csim6nq5cdpx9aqzsrfi1yhid4yb61ivyxf9p5hl1rn"; depends=[Biobase ks viper]; }; - discordant = derive2 { name="discordant"; version="1.2.0"; sha256="105lwz17r2vjzd9qz869p8qrjabac418nj6hxx8n8dxbykgyxihq"; depends=[Biobase biwt gtools MASS]; }; - dks = derive2 { name="dks"; version="1.24.0"; sha256="1fd4lyzfgf8iz3aqgayvvf2n166aq1hl57b6syfwazi42xfjxlhk"; depends=[cubature]; }; - domainsignatures = derive2 { name="domainsignatures"; version="1.38.0"; sha256="19c8n4xrwh9f46a5b41g7rp9h1inf9yjw0kr9ihd70gspbizx0h3"; depends=[AnnotationDbi biomaRt KEGG_db prada]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.6.0"; sha256="0hk01sayqnqidx768kgassdpqfavckbksgd40qf4jn9xaxq5a18f"; depends=[Biobase BiocParallel digest impute mnormt sva]; }; - dualKS = derive2 { name="dualKS"; version="1.38.0"; sha256="007h6bnm01h75gxzwxg8jwzzpsfa69b8wzf5ds3grnsx8c7rm9rv"; depends=[affy Biobase]; }; - dupRadar = derive2 { name="dupRadar"; version="1.8.0"; sha256="17b00ddsdnmhlba5rfylaxs3i5hfm6h959n6mmch4j02iy10bdpn"; depends=[Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.38.0"; sha256="18mliq9ja1mdl18m0ys52fri1pjw6bj9zx3s3mc623kiki5zc4jk"; depends=[Biobase marray]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.14.0"; sha256="11l0bj9wcp5k0a5nq0adn4w891cllfdn7qrqg76k7klx5h0p37bx"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - ecolitk = derive2 { name="ecolitk"; version="1.50.0"; sha256="0xagah7nrj6dghl2ib75l8wlwj7kzdssnlbpjdwhm67nsys3hvx4"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.10.0"; sha256="1knr03yiw0cq0kj9hklmkaap4qiphm2ph51bjn1m5cn7nyckramz"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.20.9"; sha256="0y52snwbz37xzdd7gihdkqczbndlfzmmypv6hri3ymjyfmlx6qaw"; depends=[limma locfit Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.4.0"; sha256="1v3586qddx1l74ha083x36m3lqdblrhmwd63k22jzfpkh30adz09"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.18.0"; sha256="1ypd7yq9c6mqp7nm984dm60qzvwy4qb81zrp2mvp7g87c5vdj2a3"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; }; - eisa = derive2 { name="eisa"; version="1.30.0"; sha256="11ydmv5kddq75sknbax1aiyxq60rx146qa7pd3m09axjzvk83mq5"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.20.1"; sha256="0785hhfsgmnkangcq6lg48kdr5pifxs6j9v6apv80457k70d7ybv"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.2.2"; sha256="1yngndkf3588z91z0a2fvkg423p26ajm6xv1p27x0l9mzhhaqq3k"; depends=[AnnotationDbi AnnotationFilter AnnotationHub Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.2.0"; sha256="0d3r4m0q3w2ljf4bm03z1dpiiih9cshzpbi4nnqq3jwls82f7nlq"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.18.0"; sha256="0x567fxak38ngy5hs3x567381aigh1x1fb8ww8xvmpf2wlzrlfwp"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epivizr = derive2 { name="epivizr"; version="2.8.0"; sha256="088f28jscw2w5p06jhp2qxjfpwscrf0kbq5lnlnmmshc1ghbmdvw"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.0.0"; sha256="1xgqv1gqb8fksp43313fsmgb73h8z568s28zd039a7d7v4pi0n0v"; depends=[epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.6.0"; sha256="101ibx9nq17dnn5j8kjy31pm8ly4nyzs1rrlbsvk0140avjhz154"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.6.0"; sha256="0qa13yvq9ywa3m1n2vmi60087cgg18rpnqbr1m7f137ivnxyb11b"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.6.0"; sha256="0rbd2kmdi0y97mx72gkg93s97slfig1k1bgcv5maknsqqqcwzz8j"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.12.1"; sha256="19fg4n99w983wp6ffmzadzfp1bzmsn8papb5szbrxz102r2mq6df"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="0.10.1"; sha256="1fi8nc6fbd7i4p9i9hli31xplmdpsxqcdrb8v3nf8fx9klllbdav"; depends=[AnnotationDbi Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 Homo_sapiens rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.0.23"; sha256="1g2pai0b98dfnng4h7w2xs73qp2dqacmx8x3ackqi6a515x0cyaf"; depends=[AnnotationDbi BiocGenerics BiocInstaller Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - esetVis = derive2 { name="esetVis"; version="1.4.0"; sha256="1yb238lxy8sqmxim3zd25rp642cpz8p25vdffjlija2wivq8phn1"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.8.0"; sha256="13ayrigzy55h6an3am9f77r6mzcvyfcpxpby71xilhaf6mjhyj39"; depends=[Biostrings plyr R_utils Rsamtools]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.24.0"; sha256="17rpa7mck2rrivrv5vqk4abb094v79v8dbzh6n5dj4hnw53b9wif"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak = derive2 { name="exomePeak"; version="2.13.2"; sha256="01fz3icmwq0zblvl070vmhr6fm0nxgzrvyl5xr68sv234by2nml7"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; - explorase = derive2 { name="explorase"; version="1.42.0"; sha256="1xqilix4fn603p0lqrdgl6npc5j0fcy8rcc37clzl3sm4mfklhdd"; depends=[limma rggobi RGtk2]; }; - fCCAC = derive2 { name="fCCAC"; version="1.4.0"; sha256="0fnjh0h4hn9qzz9f3hc09piwiizsf5ljz82k8f30c81d65bhx6qj"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.8.0"; sha256="0p85pya1k37qjnvbjqg96ydip7dd1xkw9zxj35fyw3hxsbrd0d7g"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.24.0"; sha256="1c4kfn2gdwg72ypyfvsqbgk2pl4qqhr6pjnzd7xla9w1whlkag07"; depends=[Biobase]; }; - facopy = derive2 { name="facopy"; version="1.12.0"; sha256="1m3sj06p9inl3p1aslj7ybx7hrc6zm9zxb2bdvxwyn1wwlgkcx35"; depends=[annotate cgdsr coin data_table DOSE facopy_annot FactoMineR ggplot2 GO_db GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz S4Vectors scales]; }; - factDesign = derive2 { name="factDesign"; version="1.54.0"; sha256="1hpdf64ghfnpb2rd6qmha8yh5vy2gcnh8jk1pgj951k5vcxrx9zc"; depends=[Biobase]; }; - farms = derive2 { name="farms"; version="1.30.0"; sha256="0k5nygacdj38qw828xn417ahbsanf074r5pknl34l66f4vggpkv2"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.14.0"; sha256="05cyryfbkww757y15wg08iblm1vv3sfgkb54kfviyc5lg8r789kr"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastseg = derive2 { name="fastseg"; version="1.24.0"; sha256="0dd7nr3klwz9ailwshnbynhd62lwb8zbbpj6jf3igpb94yi6x2jp"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fdrame = derive2 { name="fdrame"; version="1.50.0"; sha256="1nnaibcxkfr6nzw7vm5ihhbzzcvvg2y9r65msy02k1x5gwd6ca43"; depends=[]; }; - ffpe = derive2 { name="ffpe"; version="1.22.0"; sha256="0c0l1wb4ydxz6rddvg0bv9j75dv892mm452imm3lh7s5q0gq6004"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgsea = derive2 { name="fgsea"; version="1.4.1"; sha256="187c8xckx0s1p19i85nsiapgb3mppjqxp7zyld5hqyjvw3zcdj50"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Rcpp]; }; - flagme = derive2 { name="flagme"; version="1.34.0"; sha256="15rbh6v22mjg9ms6kkl7z056k3bm117klw16hl69mjpd3crcs1by"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flipflop = derive2 { name="flipflop"; version="1.16.0"; sha256="1fwvffjgf45plchwkcmfi298y2nf4ynd7dxrb2xlcw4gzx6b3ghs"; depends=[GenomicRanges IRanges Matrix]; }; - flowAI = derive2 { name="flowAI"; version="1.6.3"; sha256="1xczc62ifjq4zr5xyjhf96rp8anzw2sfg0jmgplzs0na05d4601g"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.16.0"; sha256="06jcflmdbm9f8zjh2vxbi093v16hqyi5q0c0fmvg59384p9z0315"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.14.0"; sha256="1svbph6drm4lb5k8l8x2sjl4bfanyrjy1f5nky7rrgqb00hhdq5h"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.12.0"; sha256="12yl4jwxy6mz047yqvzwkvp1yy4d323flzmpgfpv6v3pvz7x82lq"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.16.2"; sha256="1zaic9cf7xw4qmdcrhi9a9zcxvxlnn9iii0a6lnwwkpsspgn1bnj"; depends=[graph Rgraphviz SPARQL]; }; - flowClean = derive2 { name="flowClean"; version="1.16.0"; sha256="1crpgaw1bilvgcyr93c2qx6jbx18ca52dzr6r8cqznlfxdnz48jj"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.16.0"; sha256="1c8ppgy4i42l250m71ri3gbw8mw1yw2saplx9wrhnykvwxnsx210"; depends=[Biobase BiocGenerics clue ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; - flowCore = derive2 { name="flowCore"; version="1.44.2"; sha256="09vp822nrhyfxibwh22g2rdl4yv6n4w1rm7hy9hkz8rsbpbdbwv4"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.14.0"; sha256="06wzxlw02x5nzn5qc91yjawrmimsns2kmw4rm3rgbh10d4qh8r09"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.12.0"; sha256="1df181ilq7mnwlfvyjjvgd262f2sq09c5wg5fpf531m5jiaj6qpk"; depends=[car flowCore flowWorkspace GEOmap gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.36.0"; sha256="0kpw90pxappz3mbidfqjv8l6cpc4qg2hgi1wqh4rzx8b2bdl5a8f"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowFit = derive2 { name="flowFit"; version="1.16.0"; sha256="0ssyzfngfx31p7v96hgzfzc94n081fll97r6i44pycg42j9bkf6k"; depends=[flowCore flowViz gplots kza minpack_lm]; }; - flowMap = derive2 { name="flowMap"; version="1.16.0"; sha256="1gpxvnil740xnhiphgammis89819vf5s9q06nchwh92j2phj8afr"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.14.0"; sha256="0x0719w1k42v9v3i717hyvf3wqii6ldrjmjpvak6jl7w2kn4yfn3"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.38.0"; sha256="0mqgblmfili3nxnfz5h0hrhdl6wz4ylnslyx17kw7pyd0wskd26v"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.26.0"; sha256="0lpgipgrirhc5i5qzby1krg7vbd4jg566y3i5k18lxsccws12zx6"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.22.0"; sha256="0cs0sbs9cx3syjv3dhl9b56s8ccpb00cwz9z18j31yaijl1h13vi"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.4.2"; sha256="15z3laz0g3agv9dhga29myhmri5w6ivj10rivq4r0kv7lql1wzlx"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.26.0"; sha256="0bg523vxnk3kjwwplqykamdfqmyr7b0laxkml06rfr0rbj5lcdc5"; depends=[]; }; - flowQ = derive2 { name="flowQ"; version="1.38.0"; sha256="1vxc7fn747x7i2v0nv821nx9z1d5d4dyd6fa0vbmn7smjkbdxbzd"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; - flowQB = derive2 { name="flowQB"; version="2.6.0"; sha256="04hjsswngbxi40rxcb13hzvzm8y7yzpr6qzwhnishp0a5614rzka"; depends=[extremevalues flowCore]; }; - flowStats = derive2 { name="flowStats"; version="3.36.0"; sha256="0l5czm38d2vscw4hbnd79y57gjhdymqjy8kyq86s5g6h4kzir4x7"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow]; }; - flowTime = derive2 { name="flowTime"; version="1.2.0"; sha256="0308bdkyc1q5s9aasmxdxqh8gzwcmxxdnsamyjl6dkm62s64cf7j"; depends=[flowCore plyr]; }; - flowTrans = derive2 { name="flowTrans"; version="1.30.0"; sha256="0sjpsv908v4gxi55acmmx5c07923adn2p1x8z3bisxv2pwx1n5fw"; depends=[flowClust flowCore flowViz]; }; - flowType = derive2 { name="flowType"; version="2.16.0"; sha256="16z3yxqsgvnwchnfd7bnkj403xxhdifiv8a0ddisy9y1rnil2qpj"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; - flowUtils = derive2 { name="flowUtils"; version="1.42.0"; sha256="0d4ab30xp722h9avi785wj8z1qz7dy65z5faqf3jc6j6v40bzikq"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.10.0"; sha256="07vcqcxzd9cw4hvc1yld2v05zcxqs5p9spka2l80pmsjr0aij043"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.42.0"; sha256="1fbr0snid9vgb133sb5dwkk469n465p8r490r67vsmm8wqsf6iyl"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="3.26.9"; sha256="04vs7knal0mrlj0rxpq5p3x1243ji0191zf0xmvk9689m94ib2za"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.12.0"; sha256="0i6r86b1g98kaw8nhbnjjrw8gw6vvhfpr5r7dn4whl4hwlizc5qx"; depends=[abind BiocParallel colorRamps EBImage rgl]; }; - fmcsR = derive2 { name="fmcsR"; version="1.20.0"; sha256="0cbbil337zbb968zibkysrmpc8bwlpn7rl908zyvzvj8v11lxzcc"; depends=[BiocGenerics ChemmineR RUnit]; }; - focalCall = derive2 { name="focalCall"; version="1.12.0"; sha256="07lb0ijdsryd31dxp5fgp393p9f21b7in3rnf9j43qn8wmz48hnl"; depends=[CGHcall]; }; - frma = derive2 { name="frma"; version="1.30.1"; sha256="0319m8l7n2sfp4m6zipm7pkc57xikb735qk605m952m8ra08v8ml"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.30.0"; sha256="02z7igfcvhjg9f36snmmif8d7lsca9n9izg8zc543hcy7s704aa2"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.2.0"; sha256="09n7vq5f26px57sy35s29b8pmb9wcx6kii0h0i354sr3yg21ccpc"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCMAP = derive2 { name="gCMAP"; version="1.22.1"; sha256="0va9jixmp3v001gnym3clyjwarxs5d31vnyklzv31n5zffd7dm3l"; depends=[annotate AnnotationDbi bigmemory bigmemoryExtras Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; - gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.18.0"; sha256="152nd7vxz3cja8xmg5rq4j08lvd7cw1y09a737bfdq1zwrxc22v8"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="1.6.0"; sha256="0x7bsnhs3qwimfkkxr8yslawdfy83x5ip8j2wlwq4m9hqwqk060g"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; - gQTLBase = derive2 { name="gQTLBase"; version="1.10.0"; sha256="1756vfcj2dkkgcmfkkg7qdaig36dv9gfvpypn9rbrky56wm1p035"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; - gQTLstats = derive2 { name="gQTLstats"; version="1.10.1"; sha256="0gvq1sf2zjbkk431x40z6wql3c1rpclnnwa2f1hvykb8mmw70kmq"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr erma ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggbeeswarm ggplot2 gQTLBase HardyWeinberg IRanges ldblock limma mgcv plotly reshape2 S4Vectors shiny snpStats SummarizedExperiment VariantAnnotation]; }; - gaga = derive2 { name="gaga"; version="2.24.0"; sha256="1fzk3f4n612iwhxvzd81igl62hb674cjac959ivp8gjx8akw5jpx"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.28.2"; sha256="0h0mlhns9j7cpfksvdlvx9jb7szm3r1dwqb3s4s8p8hmkb9byyii"; depends=[AnnotationDbi graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.46.0"; sha256="0x6xydavk1dfdqrl97xawq5difaa4v9lhy11941bvfaa9xz01jpv"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.22.0"; sha256="160l7df4my5n29z2x9579dh0519vyk4d5m4hpmjacr9bh5r9n3va"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.6.0"; sha256="0lrlk42ic38my0gkkyakkxaxijs6rykkwhvka9zay82spcszmqv8"; depends=[]; }; - gaucho = derive2 { name="gaucho"; version="1.14.0"; sha256="0yf7y9qipdnzcll34q93dyi7q7bmq0iwg38s74d3984wjsqj3l61"; depends=[GA graph heatmap_plus png Rgraphviz]; }; - gcapc = derive2 { name="gcapc"; version="1.2.0"; sha256="0qa9yy6ljnbmb3a5wlwx75p8bwi665d24i029b9drw72zwqv4v81"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="1.8.0"; sha256="0spcxaj4finimyv812j13xp3nxj249blwwaxl308bd84kqd02pnn"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.50.0"; sha256="1s2njjcvqm9siwga20f1z49lhk4cg13chzbk8sfdnvwi57yr6rwh"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.14.1"; sha256="0d7yj5jm5kyw2jkbrzsyzzx1iw6lg4rbdyrvl7g62bjig6wvk0z1"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.18.0"; sha256="14qvrjbcvkqp2azfqi33y7pwg4wlf1vabddbirinw73za5b4jf48"; depends=[Biobase e1071 EBarrays minet]; }; - geecc = derive2 { name="geecc"; version="1.12.0"; sha256="1njvcwfdbpvmvvx8lcfw0baigjldr0v0rkqbk2rhb0h6wsiljfm2"; depends=[gplots hypergea MASS Rcpp]; }; - genArise = derive2 { name="genArise"; version="1.54.0"; sha256="101dammhv29w78cm2xylln4s7rzcy6sqw44navzs260xccdipxab"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.6.1"; sha256="1f88ix4c4pfy5hhc2wlj2zrdz1jjfzzkrj4swk34ril24gf6av2z"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.4.0"; sha256="11p8zqmmcfccl0fnyjm5kv8rbasamj6mra3bvk5jxsi4cqmbx9wx"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.2.0"; sha256="1canrqw0g6v32vy2p2xd4pz6kw5k2zyzgff5ii0p86w519dzg16v"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.50.0"; sha256="16cf2zkjffmdr2lhm7b4ckcw6p0kx40whw36m6y9510i8pmzy3y9"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.14.0"; sha256="0r0lnhf19qw1d4p87632lz0rgx0d9q3cakpd6qh43b10fil7wjgp"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.4.0"; sha256="02a3aqn115l85cnvxy16ppri4hwir6mcp1av6s00nj66afxxnzmv"; depends=[AnnotationDbi data_table dplyr GO_db networkD3 org_Ag_eg_db org_Bt_eg_db org_Ce_eg_db org_Cf_eg_db org_Dm_eg_db org_Dr_eg_db org_Gg_eg_db org_Hs_eg_db org_Mm_eg_db org_Mmu_eg_db org_Pt_eg_db org_Rn_eg_db org_Sc_sgd_db org_Ss_eg_db org_Xl_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.60.0"; sha256="173swlg6gj4kdllbqvyiw5dggbcxiwlwpqmllsv4dxzn7h25i3g7"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; - genefu = derive2 { name="genefu"; version="2.11.2"; sha256="1z70pnzgci0sjpr8vsvyg93zrjim7jh9jmba0p3pgqp3qw4gbi34"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.4.0"; sha256="12ncf9rpnv1mwmdw4rbzzhggppcnzch764aiipy0jb21ix9xj61q"; depends=[ape snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.56.0"; sha256="1z3g7frc1iviwrsv2dlm4nqvkc0685h4va0388yfxn102ln8wwma"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.30.0"; sha256="0m4sj2w0zra67d939knzriwda0nwphzspsmnl9jakl0kq8dvhjki"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.11.3"; sha256="1d2g1v6xhrf3gm86pv8ln22df5g6v6k6i4i39v4j82zn4apany6v"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.34.0"; sha256="11jlmfy8i245s3bnkcg49s8vrqfkrp5w2ibxdcixyckm7pzrv29r"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.8.0"; sha256="09ib88jqncywzc1rmjbj6p1i6nrrmbqxsn6jajdgqlgw8kpb490y"; depends=[curl readr]; }; - genoset = derive2 { name="genoset"; version="1.34.0"; sha256="1cw6g8r3n33xlqmbjsfn6kkdzz19kh71ag529sjbk9wlxi69rrz0"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.10.0"; sha256="1pff2n1s350j6i7klsnwqlizkdvvfpyqqrvc7kq5gj7yh508dxy9"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer Rtsne VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.6.0"; sha256="0m1g1hfhhbq3xjdr2fjf3wbng6d953kci965h298c168dv3864k6"; depends=[Biostrings e1071 effsize ggplot2 randomForest rjags]; }; - gespeR = derive2 { name="gespeR"; version="1.10.1"; sha256="10aw6s5bn5jiw3qlqskcp2ngshgyykslsqlwrdpyahr4rh7z0zyl"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - ggbio = derive2 { name="ggbio"; version="1.26.1"; sha256="1xlmlngn27iwnr21s9di4059kav1a7c1sajx08wja8yn8f7j06hp"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.6.2"; sha256="0qg9ivya9c2998hq40c0pvzfilb1q24h13fafymwa8p2lj59jyrg"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; }; - ggtree = derive2 { name="ggtree"; version="1.10.5"; sha256="1gkfjgihykkvqrhvzhr5brwzsgva0mxvfpa664k08jan9brjg22f"; depends=[ape ggplot2 magrittr rvcheck scales tidyr treeio]; }; - girafe = derive2 { name="girafe"; version="1.30.0"; sha256="0k8fjn7d1hxwin0vywly7vc570048i7nckhyw9j4cind6fi6f75v"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - globalSeq = derive2 { name="globalSeq"; version="1.6.0"; sha256="19aws180r5gwxrz6xmfgic0mp8piki2qmzrxyy1f75866blk3r4f"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.32.0"; sha256="1fk9yk6n3aqigcly5zsb0jnb6jmdbn3jgbp1wyv6sby124sr4hmr"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.20.0"; sha256="158ql56mbc1fw5nyzyw4cx4p5zyavwdm9117hy3ka3cxdpqaihbs"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - goProfiles = derive2 { name="goProfiles"; version="1.40.0"; sha256="0fdlqmyglgrpjcc24vp3mfz8yq6v79lnzvnkxj8rslnhddcf6lkq"; depends=[AnnotationDbi Biobase GO_db]; }; - goSTAG = derive2 { name="goSTAG"; version="1.2.0"; sha256="07v5yqzsagygmz8kpkjmy8f2g8p7997mvkisi5jb1kd00hggzpw9"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goTools = derive2 { name="goTools"; version="1.52.0"; sha256="07wa206pk7wqawgs77009cjrd8xx6wvxzaakahcc1hh0hawhkk2r"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.30.0"; sha256="01nnlh40v4zs8h26bf5ksl72a8826vl1lhdlfqawk304wr7k8kkf"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpls = derive2 { name="gpls"; version="1.50.0"; sha256="0sp3c783wxgg3g37yqq4901rdygl54ab2wqyjcgl2jrajaw44m3g"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.22.0"; sha256="1k77dxm1mf761par04pfs27qwpy2s43a5z91z9r9zpjp9sb37nnf"; depends=[gptk]; }; - graph = derive2 { name="graph"; version="1.56.0"; sha256="15aajjp8h2z14p80c8hyd4rrmr9vqsm7bvwb989jxjl4k6g52an1"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.24.1"; sha256="1ddqm2dlazczr8471171gznbpmm8cykxqn9c7vg3c3ysj7qmgxzx"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; - groHMM = derive2 { name="groHMM"; version="1.12.0"; sha256="0cjkj0ypyc4dfi9s8dh88kh6q4xlpnc0wal7njg4b4gqj0l2hva7"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gtrellis = derive2 { name="gtrellis"; version="1.11.1"; sha256="0mx4xvaipd0ydlnn4rlgbc47phlqgpihc55la6hv1fz2rs3k948v"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.10.0"; sha256="0n5x5i5v6a8wpn5mxmlpkl34b4kyypmymiwww6g61zch7xqrgywi"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.12.0"; sha256="181rsqda0bs7w2vz5dg3xzffla7yvlfkk7pfc0dzsjhw1b0yf3lx"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.20.0"; sha256="0mnc2mh3sqagvzhws1qr8vb57gp1r7n65wq6264vab2zcklhq7mh"; depends=[Biobase fabia]; }; - heatmaps = derive2 { name="heatmaps"; version="1.2.0"; sha256="0kkfzxx1ccacy4gyv9nj151w137ca084rja8kakcnnvp3vcwn5z8"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.12.0"; sha256="0xa1x8xilh2x6xnnghz10j5r4q3ib5j28wkik7r79kpvzw7i55xc"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.14.0"; sha256="1aa12m9r7zzcf91xpn8dfagr3cqp5wcp0gmkcczknavj8wgzzjmp"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl rSFFreader sonicLength]; }; - hicrep = derive2 { name="hicrep"; version="1.2.0"; sha256="0fza8zngc3cn8why5qfqscfsbj3nblbvxk4maj2ccsgpc0lrkb52"; depends=[]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.8.0"; sha256="0kyxyv5vi7q6pfjxqbxi99f3p6g9fckjafgqkv3fg98sn2nb7zyh"; depends=[fastcluster fmsb glmnet]; }; - hopach = derive2 { name="hopach"; version="2.38.0"; sha256="1v28bbz3bp7a5rpd02mxfxznhl4iwnn2bkh2kf25g64chg4jksfx"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.20.0"; sha256="0s5v79mgxdx862v1jrdf5pdap81nz5vjx25ni8s3sl97ldckf6j8"; depends=[]; }; - htSeqTools = derive2 { name="htSeqTools"; version="1.26.0"; sha256="1migbh30hh2bpa63iv1l0jqnz9ryvkx4apwyj0qzyd07b2p55qcz"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.30.0"; sha256="00fi3687bnddjzx46y98i2pqm7dczn4icgsrbhhyhqkwg49v97hr"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.50.0"; sha256="1c0f5fp6ybn88y1k408flqnndfjzfkig7vhbfxny1a43yyr0aib5"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.22.0"; sha256="1kp787zv6h4wcp3naz0zbpw1z1m2vdg1xc9db31a9j2kbv7j9xd2"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.22.0"; sha256="0vcwv1kf0mm21bx4ab6z1fn0gcgqaygrcrln0c96kpdz3zsx37mw"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.18.0"; sha256="12gdj5ngagydkrb18hn8cms3bsvzdd3pkzrqdfxw16ppm1sy6mbd"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.6.0"; sha256="1cdw483lmqi605s1chfwzjk7kqxbky3pya4nyvmnggv4r4nc26qk"; depends=[]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.6.0"; sha256="1y2h7d689wnvspvpkcih2z21r6yi70iicjyr3z91czqbr6vw5hsd"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.8.0"; sha256="0z2hz21vd8j08ivnqq1w8n9qyn8h7sr56fl42npq6a6zyi7ab4zf"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.32.0"; sha256="02cpv5nkbyjnjxcbavdxy8m6fwkj03nqss49gp30mv1a2wnin7w0"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.14.0"; sha256="06a9iavp24rkj64plzw505crg02hcd06g68drs8fgfabvdlb2jiy"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.8.0"; sha256="125n780c9hx7wh5s1w21j3j71bzw1wa3gxapsnkcrn1vzh8agbmj"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.22.0"; sha256="1x5npvg3k8jmj2xbx0p871iii51gwxqwk0waczd58ylvv023j1gr"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iSeq = derive2 { name="iSeq"; version="1.30.0"; sha256="0rypm4dhkkgd1j7vzbpcm2n6b6qcig483si46r16fwkn4hzwb11v"; depends=[]; }; - ibh = derive2 { name="ibh"; version="1.26.0"; sha256="08f1a3f0m8900y3rgrq7v9ww6055bwpqc3liqpm0yf8fz3n83wnm"; depends=[simpIntLists]; }; - ideal = derive2 { name="ideal"; version="1.2.0"; sha256="0fyh6y8k5ly19y2iysgvjsgagla0pfsihf3wwqzdcx0hp6f6ksz9"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap plyr rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.54.0"; sha256="0y3wv1bqnaa624c4425qh8sz0sd57pvd16wgxb1i88ryb2q7gc6n"; depends=[annotate Biobase plotrix]; }; - illuminaio = derive2 { name="illuminaio"; version="0.20.0"; sha256="02miyvard3y0d6qwbhq37bp4qypwph09k09630v6calr2q4jmzdh"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.28.1"; sha256="18y5wfxfxp4lw1cxxps662gm4wsjs30di455zhpgw65l7y76r5jh"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - immunoClust = derive2 { name="immunoClust"; version="1.10.0"; sha256="1mxrg832ziys1wq3vbs6gqdbg0j85y3dnqkkffmz4srl6733z9c1"; depends=[flowCore lattice]; }; - impute = derive2 { name="impute"; version="1.52.0"; sha256="0b8r4swvyx3cjcc2ky8yn0ncpzlbi1pgfsn3wpbjmhh7sqrffm2n"; depends=[]; }; - intansv = derive2 { name="intansv"; version="1.18.0"; sha256="0y76a4bv8lyrlvcl8xz4268xw358wwxys2xqkgznk8l3hxrswbmv"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.16.0"; sha256="01zxpbfx3nirvgw34v1wi62p4n6h2abqzfh89rcvlcdyw7vwgsrg"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.16.0"; sha256="01yb945jqqimwjgriza6yy4dnp303cdirxrhl4hjyprfdlmnz5p5"; depends=[BiocGenerics shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.26.0"; sha256="12gfn4kxw5phb0vf1lx30vdp4lh4jxsdgy5ddbdgiv87cbzz6ldi"; depends=[haplo_stats]; }; - iontree = derive2 { name="iontree"; version="1.24.0"; sha256="196b8pbnkyai4lxij17mhc8hikgdxcbdsqa04cck27fkplbiy6pq"; depends=[rJava RSQLite XML]; }; - isobar = derive2 { name="isobar"; version="1.24.0"; sha256="1n27wks04fiqw3qm1nkjh533qk3fwnxivganl9x5c29jfmglzmk9"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.6.0"; sha256="0bgcbwfx1clcq38fkvw9d60rz2zhww77nppb26mhzazmibhxyaa2"; depends=[Biobase BiocGenerics DESeq2 DiscriMiner dplyr gamlss gamlss_dist GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges lme4 RColorBrewer RcppEigen readr reshape S4Vectors SummarizedExperiment tidyr TMB]; }; - iterClust = derive2 { name="iterClust"; version="1.0.0"; sha256="05fdil91cg2z90vfyahhkjj5mj4ajsrxaddl9qfdk86lx0q7migb"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.36.0"; sha256="0ck8fqici1916ardwp04grnclg6ydl731mcbd0xh1a1k7zzd0jbc"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.36.0"; sha256="096qnp9wisc4hnpgy37a4h1xb1f01kqc9rhrhfkp25wkf1yxgwmi"; depends=[BMA leaps survival]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.0.0"; sha256="1y82cm0xmddhfz12iqqwpq9ifaml3r0yxs4c3cvp6k2c0wlhl173"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - joda = derive2 { name="joda"; version="1.26.0"; sha256="0qwfkq40zl16lngrmhw8lxx1qn5lh076nl6bydrzksvh1bjs78b6"; depends=[bgmm RBGL]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.4.2"; sha256="18g6dm6bl5qyr50gydlvq948cmvg21iyb6l33cyh7p4haajf7xaa"; depends=[bezier biovizBase digest GenomeInfoDb GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors]; }; - kebabs = derive2 { name="kebabs"; version="1.12.0"; sha256="1mbymzrbwzzfd5ygf8fk89igv7x0damgskri39fj913aqifgkf42"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.30.0"; sha256="117s7b32nkv95adh2j91b87r90svhfb91ag28brsq3r333m2q8cn"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kimod = derive2 { name="kimod"; version="1.6.0"; sha256="0mb9bv6bz7k27vs8rl26kh2zm8mvpkgzqhgc471lp4qz8f4fsbxc"; depends=[Biobase cluster]; }; - lapmix = derive2 { name="lapmix"; version="1.44.0"; sha256="1b7daaqsq3bvb1wbhf99pk8kl4pm4kac7bnx211isr7ica34pxb5"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.8.1"; sha256="1q8dz8wcq1r7kr635s9q21g36sxkdybk8khhpa4p57qv8r0gppl0"; depends=[erma GenomeInfoDb GenomicFiles GO_db Homo_sapiens Matrix Rsamtools snpStats VariantAnnotation]; }; - les = derive2 { name="les"; version="1.28.0"; sha256="0xy7ggc2b20i1c78mww84xvc0jhbinxn00nbfvnbw997vjqr7r79"; depends=[boot fdrtool gplots RColorBrewer]; }; - lfa = derive2 { name="lfa"; version="1.8.0"; sha256="06w0032wwqm2cxid7brb6iq6bkhqc5x3a08wwyjbib6lnj5n7rvh"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.34.9"; sha256="1y2fm61g5i0fn0j3l31xvwh9zww9bpkc4nwzb1d0yv1cag20jkdc"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.54.0"; sha256="1mhqxy4bfb38lp57wrm6jm57xbwhqz6z78cxjdjr8r9inysddjlp"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; - lmdme = derive2 { name="lmdme"; version="1.20.0"; sha256="1742ffw592cpp0bxd38g4k51h28iaax995lzmgxb3di6kj6h8an3"; depends=[limma pls stemHypoxia]; }; - logicFS = derive2 { name="logicFS"; version="1.48.0"; sha256="1qkbc6xgmppicg30613ak0dy8fn1irq6n8kf2qvwd95y210zlcfv"; depends=[LogicReg mcbiopi]; }; - logitT = derive2 { name="logitT"; version="1.36.0"; sha256="08jb55ccxbdcyrd497lgdhwkmj97r9rl21jc411l7fwckqz3pgwn"; depends=[affy]; }; - lol = derive2 { name="lol"; version="1.26.0"; sha256="00wl4zw0qvinb2cy0cbcgrg0a9xr6s7b4y30ykd4666fmdk60dg3"; depends=[Matrix penalized]; }; - lpNet = derive2 { name="lpNet"; version="2.10.0"; sha256="0r3xyhws10fq84y2rxv9v5wqbg05di4kkccv1l63idf38g33dvs1"; depends=[lpSolve nem]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.7.1"; sha256="1qm131flq00dgvkdv6qz8xbh24qqadg8hn35q6ymsv6ql390xi06"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.30.0"; sha256="1gy0137h5l2xmq3ahqsgg0lzczgbqck4qrqbgfnh8r0cb2r8vaaj"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - mAPKL = derive2 { name="mAPKL"; version="1.8.0"; sha256="08f6r31zlabsa7b8k5cnnwir7scjaix6mnnkgfs5h4gvb49vrbbm"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.32.0"; sha256="0wvwfq4aqnhn0943v807sij3dasf93l3rhvcj7a65jpv4csd4vx2"; depends=[Biobase oligoClasses SNPchip]; }; - mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.12.0"; sha256="0iijl9afnynhh2pa9v1xj5b1cf0svjzlkvg3al8jrv0i28jibvi7"; depends=[GenABEL MASS outliers qtl]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.48.0"; sha256="0jy6b57pi58795v1xhshaqrvpd27qarzv06r8il0d9085asc3v1r"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.16.0"; sha256="02wzz7s6cr0bligvxm37gwkbhzwfmaki27drbdaaiyssqmdb4bkq"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.50.0"; sha256="1d6rwfm42spfbqsbssbrc69rv2fj8gcxm4na9k66vij7dwi8nvd0"; depends=[Biobase MASS mclust venn]; }; - maanova = derive2 { name="maanova"; version="1.48.0"; sha256="1vvjk6y8mp5h7l8yk4f1y48jx5k9fl9s12x2mgsbap306paw860q"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.52.0"; sha256="168jw5bi1nbj2dfhipnvja7w0avmiw6vrvdany73d41fvigmagj5"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.52.0"; sha256="1ns7f47l7ig2fm95l67ppym5gbkbr8lp18vx51pqwjg8r5rvj9sc"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; - maftools = derive2 { name="maftools"; version="1.4.28"; sha256="17b3v1v9ipid8gqsq2gy0fpminc58f1mng9i2andswfr5ip38g7s"; depends=[Biostrings changepoint cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson Rsamtools survival VariantAnnotation wordcloud]; }; - maigesPack = derive2 { name="maigesPack"; version="1.42.0"; sha256="1c92kkr2rmfydckmbvri8g0lzz1v3hx93zpmb1pwrnlfpm01j95j"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.54.0"; sha256="17fmzd12acdpq3vfnqrafmmg5jcmdgkf83mrqjpw92zah2w8490a"; depends=[affy affyio Biobase zlibbioc]; }; - manta = derive2 { name="manta"; version="1.24.0"; sha256="060x5rdzkx882pa8x9w7j3sgj0clar6w35yblbcggq579r9jpx06"; depends=[caroline edgeR Hmisc]; }; - mapscape = derive2 { name="mapscape"; version="1.2.0"; sha256="1nsr3n0vb0a9bzv2d9mginl5lcv8dvxpkv86ygn790bbkz35fq8x"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - marray = derive2 { name="marray"; version="1.56.0"; sha256="14c93i86yc7jn4ax8p4l0z6v9xisw1bv7gzb4a0gbxhxn7mddaic"; depends=[limma]; }; - maskBAD = derive2 { name="maskBAD"; version="1.22.0"; sha256="0rg2r9yg3wviz0s5z5palmzbqb4cya4b0hd6w43fnwrfp46hqlp8"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.14.0"; sha256="17bb7cm6wiwygxvp37gjiagxzali2023ikwxpqwghz6dn58nkqnl"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.20.0"; sha256="0m9swn284xk6y7vw2l8r5yjbq0b7x8n8ypd706fz9yc5ppg89h4j"; depends=[]; }; - matter = derive2 { name="matter"; version="1.4.1"; sha256="1l8z30pzl0jssdkfmzwa5741mbn81sraw79jm38qv7h72mjsm891"; depends=[biglm BiocGenerics irlba]; }; - mcaGUI = derive2 { name="mcaGUI"; version="1.26.0"; sha256="1ymdlc23jc0glfg15nlax71awkhqbaz5xv7pxnppf2m5sz73gfy0"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; - mdgsa = derive2 { name="mdgsa"; version="1.10.0"; sha256="0xivpr1w41pzvfs4hjyc0vvmrbq0pbckai7j2vf4iq5sxxc4xyv3"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; - mdqc = derive2 { name="mdqc"; version="1.40.0"; sha256="0khrkhl4ksvls4qb0273zn9bc9dzd6234v1ly6vb2b2dslm8z9r0"; depends=[cluster MASS]; }; - meshes = derive2 { name="meshes"; version="1.4.0"; sha256="1sz2hj16q0swz13vfaf63njg920xnx9ysdcbwfqlyik1i7s0c0h2"; depends=[AnnotationDbi DOSE GOSemSim MeSH_db rvcheck]; }; - meshr = derive2 { name="meshr"; version="1.14.0"; sha256="00k37apfbfw1qxvh8wz1hg9gg32h8lib9yw0i9y1882krz61x5b6"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; }; - messina = derive2 { name="messina"; version="1.14.0"; sha256="0483dvnq6ns4pfq8axcqgbd2n3b8i1b9063appyi5cqfa29s2sqm"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaArray = derive2 { name="metaArray"; version="1.56.0"; sha256="1n3hmf0gajfpg5gmjgdxnpb4x395wm03bpfvccgnkkwfv6qrzd7v"; depends=[Biobase MergeMaid]; }; - metaCCA = derive2 { name="metaCCA"; version="1.6.0"; sha256="02a6562i2gddnk0izlrsdby7sx2s36axkdwy8c1z92s4n71m05q1"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.14.0"; sha256="1lp0i0pf1xc0rhr61rh7qna0hbl0svqm5ysfgdl04i2ghglrrmqm"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.18.0"; sha256="1d8rr4nwbqxb7amdfrphw2ndyfhh74w20qgbzwlfc0wppwfwm5rr"; depends=[NOISeq Rcpp snow]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.12.0"; sha256="0214idivldfmfym3hkj7qicmcjiymikag3ydqxp7fq8m7vb3vxdz"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.10.1"; sha256="0h7i6jgpz8zh9l1w0w82333bnw7zrdn577s5ma2lcpfpybrr17zs"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; - metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="1.10.0"; sha256="1c8l4dvw9vaw2kcc11a8six5rcayc2girzzz88lq4a2ly5f225kv"; depends=[ape Biobase Biostrings dbplyr dplyr lattice lazyeval magrittr metagenomeSeq purrr RSQLite ShortRead stringr]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.20.1"; sha256="15ib66lir0smsk1zq41g5nf6r93wvg5a3bai44gg7f1cgc5xf4xp"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; - metahdep = derive2 { name="metahdep"; version="1.36.0"; sha256="10v5zx3xn9xr18qwb2hy3566xzk4a38084xvbs7cfh9aypq58zfj"; depends=[]; }; - metaseqR = derive2 { name="metaseqR"; version="1.18.0"; sha256="0g707gimklmnhmgicvslmbzam67fmh3h9h4nsqv41pc5kp74n6ql"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; - metavizr = derive2 { name="metavizr"; version="1.2.1"; sha256="114nr1nb8wniqb8gq0v6ah9vimbf4k1iy0k2chr0rz6jh7b4larc"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.0.0"; sha256="0ji9yz4x8yk9d156ssfcf4mv0gkrbrfh37w1saywap4680ap47r3"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methVisual = derive2 { name="methVisual"; version="1.30.0"; sha256="0xdzmvhs4hjj12w6lfwa7vcikdgc08krqxdak1959zclw4mp4jq6"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; - methimpute = derive2 { name="methimpute"; version="1.0.0"; sha256="0fgdd7dqs2sjvm3g0ivlnb61d8ccc32zvwbjgaw2raz6g4dm4c53"; depends=[Biostrings GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methyAnalysis = derive2 { name="methyAnalysis"; version="1.20.0"; sha256="0cmgv74pc4gj1qrsk2a7hx45vssf73hcc80zpqlhwzy3yg103ql3"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.2.0"; sha256="05i7z2b0xyszfadkk0qcgvhx6fxlfv7dcqj6ix0y0349fgsd2phz"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.4.1"; sha256="1k0nfn9318sgwm4z963bhnbp4c3zv85v3f9886vc5hgaisr0yvai"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.16.0"; sha256="0lq1kgliyy1q48csgc9bprapy9va5kpqlpm87wq4d967a5q0ja5h"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.12.0"; sha256="076z90fmzkp9j4xdlr2amif8kkdmmkh0jcvs384207if09w9i4v9"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.24.1"; sha256="05hwixscc79hbjx7g94nkrwk26zjf156dlvhgfjr890zn4mj709c"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - methyvim = derive2 { name="methyvim"; version="1.0.0"; sha256="1hz6c4bdgslxrbkr0q9fx6ffrrilxcanm8f5alady5qndm4vmiw1"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 gridExtra gtools IRanges limma magrittr minfi SummarizedExperiment superheat tmle wesanderson]; }; - mfa = derive2 { name="mfa"; version="1.0.0"; sha256="17mwf4p4cr4xz1g32p4j0jaxvzfvjzilyrl9nv686nr7cplgkbgp"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.26.0"; sha256="087hmvrrd5x1s6198g9q8nwrpd36zywg39dl4l6x8qkr7zgjzakb"; depends=[gplots]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.0.4"; sha256="1cjjikbw6anb1cgwl4718lv1k5acc2fhl6c0gmszdl16x8z2yyz1"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.8.0"; sha256="0fj96h1xan56sc71ycc4c5b2q7chncsknmdlj318lz95mydbiwdv"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.6.0"; sha256="1chsigqmfxajd8gll2rq7ccbrsgp9k0cddn4ds4zkiiz6a79iiww"; depends=[AnnotationDbi DBI miRBaseVersions_db]; }; - miRNApath = derive2 { name="miRNApath"; version="1.38.0"; sha256="11137kg0a1l8z2aiz6qisg1gq21rpgzhwr4z8dg0bkh9137jwnx8"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.12.0"; sha256="0lq3kvs6ri9pdjxwl2hyvdymcnx33avgw7mfg1h6q7dfx0icwiw2"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRcomp = derive2 { name="miRcomp"; version="1.8.0"; sha256="1fxmkn5vp0szjjb0cl8vmaz411x7m10krs4j8dkvlnfhzlqhar96"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.0.0"; sha256="09sxjj2pj4s03dqqphywyhvmk3q2gvdn2nph5nplqwny6q9m2i1v"; depends=[SummarizedExperiment]; }; - miRsponge = derive2 { name="miRsponge"; version="1.2.0"; sha256="0c3213hpf78ynqlaj12p0j9172gvlrhrx4rn4kmr6g1ja9xk80k7"; depends=[clusterProfiler corpcor DOSE igraph ProNet ReactomePA survival varhandle]; }; - microRNA = derive2 { name="microRNA"; version="1.36.0"; sha256="0mc81fy9y3jgc3ll074ksmw72d8yp29pyaankn3na24r96lfcxnj"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.0.2"; sha256="185igm8dr5irc4bhgjflkxax0gk4lgm3zznqazv378j435194xgh"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; }; - mimager = derive2 { name="mimager"; version="1.2.0"; sha256="14r0h676nhsbg175hj7jmkp1ny5wfhykmy2jm2s9qgdsfrgacgv2"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - minet = derive2 { name="minet"; version="3.36.0"; sha256="1ig9kwh7fvhpglxkda9l5nkaz3rmhl6bc006h6mrz9hl130vmnn8"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.24.0"; sha256="1pk5savz9ziarx2iajqnck4vjmh3bnrmzy5m06vx3vmcww46ddi7"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter data_table genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.8.0"; sha256="05z8yq7jl3s3i3p9b6p7b16hrshg69gmfs0f67xq0svfb3fqpm85"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - missMethyl = derive2 { name="missMethyl"; version="1.12.0"; sha256="1fvpny7x56l55zhgabm6al2i2n0hix7fp7d01bzirsn7chxpwny3"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; - mitoODE = derive2 { name="mitoODE"; version="1.16.0"; sha256="11kyihynbl3kcrngv8dhiqn3ghpkvv0xi35pf8np2p41zdhbrpyv"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; - mogsa = derive2 { name="mogsa"; version="1.12.2"; sha256="0a29q9jak4vr05ngh2pcsfifa9i6p086acjk2qrzwnc3lcfm00bm"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monocle = derive2 { name="monocle"; version="2.6.4"; sha256="1x4y02kn8spzz8y4hgmis9h2l494ys2j1vjs0axh32fp1rpc6d8c"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.16.0"; sha256="08q48zakyfydrj8vix3a5w0j4ix5h1hpqccv0jxgj55gpdc062kj"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - motifRG = derive2 { name="motifRG"; version="1.22.0"; sha256="193zl2rlzwxv9p9q5i7rilj3w05ndqfyp9bdpvagp5s5cin4hf44"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; - motifStack = derive2 { name="motifStack"; version="1.22.4"; sha256="13wrpdgyhzrqdp7k0d7iym2pjjla46rh3i1qwm34j22n7j0pxs8x"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="1.8.0"; sha256="1jfff6jgvrylhnpyc5zq1fah33xq8vf7hypv22vg7js6m8bmcx5j"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.2.1"; sha256="1k47yca1w59w0k7w4cxahhq4r2jyb8vflpzmrl7wnypb4lf9mbc0"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.0.1"; sha256="0a7hg307f274n8vxknl0381xpvgphsim07pk7dnh0af3a63lh2ji"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.0.0"; sha256="11lb626w779hawfl06n85mfm0ld8p46ns6s67fkxcxggr4rbkh82"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msPurity = derive2 { name="msPurity"; version="1.4.0"; sha256="105z60rdflpz0j9ckrwc7dpywh9v3lqwbs4adwlrvziz87ah29al"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.10.0"; sha256="15czlzssrxsgjckxy6ckphfcyj2q12iq5q86238xj16wfqphax45"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.2.0"; sha256="0gnv5gk9as3gn85gwgs8agrvzk5948wiwa685xjpwz359vbqnxrs"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.16.0"; sha256="1d7h4q8dbiv6p7sfslfmhjhrfr3fkjwl82gvb1179wb8qm3qkgwc"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.16.0"; sha256="0gy8y6ca57j7gqp69r008802gfpkay56k4aigy04xij1jd17abx7"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - multiClust = derive2 { name="multiClust"; version="1.8.2"; sha256="01kidj4ggv26981b411vf4lsa61pghb4d56j6nr88r87rja9mn2l"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiMiR = derive2 { name="multiMiR"; version="1.1.0"; sha256="0zl1m62j9gdb11n4xp2piw36ildjvs5z2gw7f3sdjbkdl6jvsgwz"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.2.0"; sha256="1zqlgz2iprwqnib9hsxynygnvwb0mqn4zbgbqrj7nsxsd5qsad51"; depends=[doParallel foreach SummarizedExperiment]; }; - multiscan = derive2 { name="multiscan"; version="1.38.0"; sha256="07fb0a7kn8bjvq9cx4dvdjrf92830vwpz5n31mgk58aw3vg3mz66"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.34.0"; sha256="0n11rd49xl2vn3ldmfips7d3yb70l8npjcqsxyswr9ypjhgzkv9j"; depends=[Biobase BiocGenerics MASS survival]; }; - muscle = derive2 { name="muscle"; version="3.20.0"; sha256="16kawdvm08hag2kghdn438z0ysby67p989v3xlcf9r8f62isw6b7"; depends=[Biostrings]; }; - mvGST = derive2 { name="mvGST"; version="1.12.2"; sha256="132s30c116gmbimzf1jw70p0pz4fv6lbfqb90sxnzbqvb8alvs0h"; depends=[annotate AnnotationDbi GO_db GOstats gProfileR graph Rgraphviz stringr topGO]; }; - mygene = derive2 { name="mygene"; version="1.14.0"; sha256="0qqkpsqk99575rc49kj7s5yl22jb96gmk47i5lm700qi4v9fyim4"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.8.0"; sha256="1r4hqy5jz4xqswj3pfzxmncjapjmcksbx428f7lfncj844198g1q"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.16.0"; sha256="0yk70dka56zd8w62f03ggx3mandj91gfa767h9ajj0sd3mjmfqb9"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.12.0"; sha256="1x3gp30sfxz2v3k3swih9kff9b2rvk7hzhnlkp6ywlnn2wgb0q8c"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.24.0"; sha256="1rvqlfzdbqz7a035c2d0rfziail71pvyla6fi3mv1xzrm2vpw0b8"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.0.4"; sha256="1hr49a3svk65d585yix13ggd57zv5zzmavb81c452y2jpay0www0"; depends=[httr igraph jsonlite plyr tidyr]; }; - nem = derive2 { name="nem"; version="2.52.0"; sha256="0114b8nzv07gii87rdcvia6n7jn203f5whx6x6x54ijxq8m1fkk8"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; - netReg = derive2 { name="netReg"; version="1.2.0"; sha256="1cmh66m5zp1awrg79f8d09b48shq8hyjvkz6mfxrnvqbcj32v8ph"; depends=[Rcpp RcppArmadillo]; }; - netbenchmark = derive2 { name="netbenchmark"; version="1.10.0"; sha256="173jmvslg8vj078psnvk6s4sns8n9zv2z8hkq6iq64pavmn9cf91"; depends=[c3net corpcor fdrtool GeneNet grndata Matrix minet PCIT pracma randomForest Rcpp]; }; - netbiov = derive2 { name="netbiov"; version="1.12.0"; sha256="1xxqrpjsn6pc097d4c1389gn80404pxjxzsm5zz4bcfk30lr5w3l"; depends=[igraph]; }; - nethet = derive2 { name="nethet"; version="1.10.0"; sha256="1ssmjgxmsyzwhsnpq263q3vmspg74xzin6bny3y9icvs8x893mbp"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; - netprioR = derive2 { name="netprioR"; version="1.4.0"; sha256="1cppds5a3d8fs4wbfj2asc24ksxk27718gwyyy5hgigy7zx9z4h3"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.38.0"; sha256="131xbpkaglnspa2zxq49qwn2nnphlh1ly5s5hx8p9a0da2ccspas"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; - networkBMA = derive2 { name="networkBMA"; version="2.18.0"; sha256="04rkhi1iiwygilzmfbwsd2acg7cvpmdrli6qb0a0wi1g0yx7k95a"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; - nnNorm = derive2 { name="nnNorm"; version="2.42.0"; sha256="0dm1h989vkimcf51glqjc1lqiaq28cgym82m99afcisinldnwlhr"; depends=[marray nnet]; }; - nondetects = derive2 { name="nondetects"; version="2.8.0"; sha256="0x06jz8gw97nks84y7pkgqm8p1jqdfgpxcrk48q8pdnc2flaq4a0"; depends=[Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.6.0"; sha256="0cdcl7jp9hhk2dkwhyrzxg8f768r3llfi3vy5a5ppann9016nxp6"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.4.0"; sha256="0g1f623f1rzsp7ywm2434gcvws4biziav76iliir5g10zafgw6vc"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.14.0"; sha256="0v99nirx9j4dpfsb1ihyhj7iwy7hkxda6bf0l3326mi13xy2jirb"; depends=[Biobase BiocGenerics GSEABase]; }; - nucleR = derive2 { name="nucleR"; version="2.10.0"; sha256="047ny4dm6x45hsagznwibrq6i3rycvvwmxl8hgh1c2phl87njpbi"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.6.0"; sha256="0gyxb4ydhx3igxddp4jh9qg9787bv1lk8dyahq7y96jv4qmmw65k"; depends=[IRanges S4Vectors]; }; - nudge = derive2 { name="nudge"; version="1.44.0"; sha256="1yp2x6hdn6vhvy922f4d74zyw2n5shrhlpxiig50hwd8dar2nn5f"; depends=[]; }; - occugene = derive2 { name="occugene"; version="1.38.0"; sha256="1lwf3kv171lapk4lk8v33996rjb54q3w4dbdn1b64vlcgw5586ip"; depends=[]; }; - odseq = derive2 { name="odseq"; version="1.6.0"; sha256="15qlapq5vp3s99888kmmabvkl0vx507qkkh7v9a9zd7algz5shwj"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.42.0"; sha256="1rjnsr3h4bi3bjv580iv2rfs9c062qyilm9xxkk3rx2l0ylih05y"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.40.0"; sha256="0xly40mz55z0lis2b1zh3nhyf5qw2d8qlrm6n51hz49y0bqjssr9"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.0.1"; sha256="13bjic4msqpjh0llqa0fs4nzmskf0h97mi614n458c3109bscdjk"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.18.0"; sha256="0f83c907lbqw0idzrxl5a7hb4r9ginrj4798ymfkgc2m6a5x1w46"; depends=[ade4 made4]; }; - oncomix = derive2 { name="oncomix"; version="1.0.0"; sha256="015sgiagij3pzxvcqygbby1rsl8ximmwpd09lb50w95xa1ks466z"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneChannelGUI = derive2 { name="oneChannelGUI"; version="1.41.0"; sha256="0hx5s3y9zgx41p516q9w09crkihyn8hckwmf8jzxj7llrplc3dm1"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.0.0"; sha256="0jq4affxz5jr6pn01cz0cwbl1f930v63pzswz787m7lv7bvvbnl4"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; - ontoCAT = derive2 { name="ontoCAT"; version="1.29.0"; sha256="057sbc0s08i22gjg886ngz0k59r4v29ssh11qj0wyv4n5g3zs0hg"; depends=[rJava]; }; - ontoProc = derive2 { name="ontoProc"; version="1.0.0"; sha256="0la7lcynmdgavvzdz7b5g726pm4205r8194dnsmnhc5h3lryr36k"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="1.16.1"; sha256="1qzx0qq1d2hi5whqi0kbg8xmjbglv6j2fli3wcx932g66lxwg3sv"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.0.4"; sha256="1gw4b7df390q40zy0bnv0wlwr9dwji99rhgy678k32nm8r2cdc19"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.0.0"; sha256="1mchbalmq6mbxp9mdrmndz3pja7j1ffx5xglnzglfdqm2004gdlf"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="1.16.0"; sha256="1855wrszaxwc8rghhn1hgj6hrp5mxsyffbs9ccjckq5jl3z7z1mj"; depends=[ape arules Biobase biomaRt fastICA fdrtool igraph pixmap scatterplot3d som tsne]; }; - oppar = derive2 { name="oppar"; version="1.6.0"; sha256="0h4wfgjq8xm5f6bcaj5vxy686ymr42r3ig9zw93ayycpfl81p275"; depends=[Biobase GSEABase GSVA]; }; - pRoloc = derive2 { name="pRoloc"; version="1.18.0"; sha256="0syqcpfwm7bxk7jzr988zx91m7ny4aiy9rc286xakd4snl4vafc0"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo Rtsne sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="1.12.0"; sha256="0d4gv7nkwh8wbgdx37gwg4c29704q3z811cwwxdpx3gdgsa1iizw"; depends=[Biobase dplyr DT ggplot2 MSnbase pRoloc scales shiny]; }; - paircompviz = derive2 { name="paircompviz"; version="1.16.0"; sha256="1yw27k417zcbx2dji8hjw6g1qcp8762k2c9j7gddfck7k7qjf1jc"; depends=[Rgraphviz]; }; - pandaR = derive2 { name="pandaR"; version="1.10.0"; sha256="0x7mandjc2dk020pq8733wshzszrav3i29iq74pnp13dfrz4zb92"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.0.0"; sha256="0wg88axsgmrsihib7yc1xgm45q5d9dgikqvqncn7fx59i81f6l6c"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.48.0"; sha256="1pfajph1wzwww2w9djpkb8rwszjcb0hink81fy27js3ppzm3cc7l"; depends=[affy Biobase]; }; - parglms = derive2 { name="parglms"; version="1.10.0"; sha256="11gxwv274g6fyz3ckl6l7wrzx229zgdparlplb7niz63cqqhggn5"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.36.0"; sha256="073prpjv5hf2y0864gzjj4c0hlncw81nw877f0yykskpq72df38i"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.46.0"; sha256="11q5nbscf1zcpw437vp12vx7n80dm3m3nymc7r79hbz3idpn16bp"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.8.0"; sha256="1l8544smgrfqavpv1xjwxj2mv8m8jgp50basylkamg1q1098l1h6"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.16.0"; sha256="0sr8fnp5i2f38cnxsa3lag60ibjzp169yml55jay2gc0br6bsjm7"; depends=[princurve R_oo]; }; - pathprint = derive2 { name="pathprint"; version="1.6.0"; sha256="0f2icjqxw4q3zgkr71836xhvad488w21xjwy62c2cnh9zbmm47wj"; depends=[]; }; - pathview = derive2 { name="pathview"; version="1.18.2"; sha256="1jspjwf919gifwqx29wgsjfyrdwp6a1i7ip444gcqz9i7crpfwvz"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.12.0"; sha256="09djd4ix6abljqv70k89p6slghi2y6phyy679f2dsyqn8cmhlp8s"; depends=[data_table httr igraph jsonlite plyr R_utils rJava rjson XML]; }; - pbcmc = derive2 { name="pbcmc"; version="1.6.0"; sha256="123bijvnq29b9sc2wa9a887wdk8223bn26bv64pmrv97qnkvfarg"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.4.0"; sha256="1z8nahkz13v86k1c89nypxjxwawds1b4r7inbzns20g61caxxxnc"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.22.0"; sha256="0371ns6702nk5s3pj59z04i2sjf24sj0wm3m4rj67q4p5v7v1ksz"; depends=[AnnotationDbi Biostrings ellipse]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.70.0"; sha256="0ii235g0x0492kh8cfrf28ni0b6vd6fh7kizkqmczzqggd6b1bk8"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcot2 = derive2 { name="pcot2"; version="1.46.0"; sha256="1pymhr9ypp5g27bbnayrz4ks8rg5j634bf4l596m2b6c4q9d9rc5"; depends=[amap Biobase]; }; - pcxn = derive2 { name="pcxn"; version="2.0.0"; sha256="1iq3i3cj7zq7xyprgjv4v4whycm67lzcrsz9p08lxyzz7ci2y6xn"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.42.0"; sha256="0cs47qzkpphixcwn3fl9pfrw1qans8y51y8lb9phikh4s8cdq061"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pdmclass = derive2 { name="pdmclass"; version="1.47.0"; sha256="1grc1fyn8yhwixi7638bsyb3zc6zhzzrbfh4hcpqk6gf653dls63"; depends=[Biobase fibroEset mda]; }; - pepStat = derive2 { name="pepStat"; version="1.12.0"; sha256="0bnak90zfycd5a9qkz4lhwk4h61pr0pwn3hzaksxcv6c025h0mwm"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.12.0"; sha256="062bgkdqmp1hqibdar3x3lq1vdkpds9xzadq6fivj0iyx4lwpsl0"; depends=[XML]; }; - pgca = derive2 { name="pgca"; version="1.2.0"; sha256="16v1fdw3abbxh5jmrsam8mhhamhjgkwmx7i16d2kxsybxp3k4zrb"; depends=[]; }; - phenoDist = derive2 { name="phenoDist"; version="1.26.0"; sha256="0mhk918cbk6zg6acs7fzvpy2fkj9gdj0acx5mfzvvypahlfbf1za"; depends=[e1071 imageHTS]; }; - phenoTest = derive2 { name="phenoTest"; version="1.26.0"; sha256="0wl1b9g5wlqzjll1kvgl29fl1qg6dqj9qwz5wfdhkvpxh43z4pyb"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; - phenopath = derive2 { name="phenopath"; version="1.2.0"; sha256="150yqs7p63baxg713rh2qhbbg78d58wfmmsk3nqbspm4nk7kl458"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.4.0"; sha256="1b6fvhpdp1wd20sdb72a3mxyrvdxvmsjp99f0hnpvnb1yfnjcm7r"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.2.0"; sha256="1l0zrrah3p602g61jy5gh9bnv6qi26klwzvfs6c47z3dpsp7ikzy"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.22.3"; sha256="0djy250cnzvjbb1psxwi4ffsb5yszsk54ma540nw0s7bbqy83pn0"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="1.18.1"; sha256="11da6z1xsk1r89ggh299yp5d3b4xw3nmmvj0lx6wf1liai4jss06"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; }; - pickgene = derive2 { name="pickgene"; version="1.50.0"; sha256="14wgfjnpa1fnnvf0rrfil556ixdsicfyd3yvs7wwsri42vwixgl9"; depends=[MASS]; }; - pint = derive2 { name="pint"; version="1.28.0"; sha256="0lz5svmm5gqxqcjic4689d07wkbndbszscs25cdm690wdgkvj5bm"; depends=[dmt Matrix mvtnorm]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.44.0"; sha256="0s1zwh8dl8lm99avk3kd88kk5x9s1hmal7aqmc0psw57gxid91qq"; depends=[graph RBGL]; }; - plateCore = derive2 { name="plateCore"; version="1.36.0"; sha256="02h42k6aivmchapa9bl5dxpl37706p31ky4a1hr48yfgacr750sn"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; - plethy = derive2 { name="plethy"; version="1.16.0"; sha256="027z64s0dcyvyzjmggz0s5jas3zcx7ckp2rs6190dp16hrldqrmc"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.50.0"; sha256="0sgxppvjiqraw292d1kxwl2lwb6sd1ck1w560q299sp78zsnsaan"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.48.0"; sha256="0n0mj5cwgpqgdlmyhifwb66yp3m3j610f8xs4bkhpk36x9b8bbvx"; depends=[affy Biobase]; }; - plrs = derive2 { name="plrs"; version="1.18.0"; sha256="0y98vknq7052vsapd7wjihczbrfhvnckhxy80sxslbryh3nsmbfs"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; - plw = derive2 { name="plw"; version="1.38.0"; sha256="1mys9rslhc3rb23wbvlnxwl4dcca2m395bxfg7i4217hvzai7b25"; depends=[affy MASS]; }; - pmm = derive2 { name="pmm"; version="1.10.0"; sha256="1bzmh0p0c649sqp1lhz8zdqh4k7b3n78akgn2wlhawjbx3lb5f6i"; depends=[lme4]; }; - podkat = derive2 { name="podkat"; version="1.10.0"; sha256="0c93gnrcw8rwq9r4f7kkpsdjflarwixjpadaa05w98vqa9x5ycc4"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; - polyester = derive2 { name="polyester"; version="1.14.1"; sha256="10dj2qy5b94qd0j0rm7a6j50zqaxdjjwy583cgci158cf8s8y915"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - ppiStats = derive2 { name="ppiStats"; version="1.44.0"; sha256="14xrvcfbp177mpdlzi2kxmv0v9j93i4r1xsw06fr3gw9a7l6zg3r"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; - pqsfinder = derive2 { name="pqsfinder"; version="1.6.3"; sha256="0rf0sjd1gsdvn1qilckp5y9vb7j3wgs9h12gcxcjfrcaax8b3h6h"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - prada = derive2 { name="prada"; version="1.54.0"; sha256="19f8h411mzbrim1wvncr7wa3ah0qc1vy9kzcbx64pcif2xfb5qin"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; - prebs = derive2 { name="prebs"; version="1.18.0"; sha256="0ss2rij3lv45d4va4dcpmclyaqmkjwk9hyppylkwlvcbgf0ng8xf"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - predictionet = derive2 { name="predictionet"; version="1.24.0"; sha256="10ki86jp7a4dim849zf5pbvd7bgbil8299xl08akyqf7pl37j2qj"; depends=[catnet igraph MASS penalized RBGL]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.40.0"; sha256="0mrdgbkb9dcfr9gsqyxfpshnxx60mq97pl98b8yl00l2gfwz48ph"; depends=[]; }; - proBAMr = derive2 { name="proBAMr"; version="1.12.0"; sha256="1arql2f4f6zjsqrshdqmbz8vlvydb5v66q0qa7rmdlz9hj9smahk"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proFIA = derive2 { name="proFIA"; version="1.4.0"; sha256="0psn21jsrqplgwjisbfzqrfwiqcy45cwi04pmg1w1dw1bbwmjjzp"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.6.0"; sha256="0ijqarp7rgszja1yymancygqcxsxw6cg4ydxzipw1wk6a3gl71ck"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.6.0"; sha256="0grw3386czykfq1yxrvqbph9l1xs4hpxb8hx0fjsd0v3mhvgkbk9"; depends=[BiocGenerics Rcpp]; }; - progeny = derive2 { name="progeny"; version="1.0.0"; sha256="1ijhqsk6k70dmkkwxl003r9rcmx7j16z4i8fxjhxnx5d8g3swib9"; depends=[Biobase]; }; - prot2D = derive2 { name="prot2D"; version="1.16.0"; sha256="1fp530fammi9xifx5g72jz8k7y3chjfg3mpybsbf5pzvva1429sj"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.18.0"; sha256="069ksj5md9m7zylqwy6pyj3p9pa4j04vn4ss4d2r8n7a5z8f7d1g"; depends=[]; }; - proteoQC = derive2 { name="proteoQC"; version="1.14.0"; sha256="1kv8ah7pbfl1gbb1pnjlmdw5bskfyh0hsn0nxraz0ybvwzn3kdsl"; depends=[dplyr ggplot2 MSnbase Nozzle_R1 plotly plyr reshape2 rmarkdown rpx rTANDEM seqinr tidyr VennDiagram XML]; }; - psichomics = derive2 { name="psichomics"; version="1.4.5"; sha256="0lvkbjkdg5m1ni6rrnzzq2d2p5j0156vp2q9i3c8ji40fp7rx0vv"; depends=[AnnotationHub cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma miscTools pairsD3 plyr R_utils Rcpp shiny shinyBS shinyjs stringr survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.10.0"; sha256="0xf03vjyjiz4093cqnvi3dm532scx3f17mcf0av96h052vy10qb7"; depends=[BgeeDB Biobase BiocInstaller biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - puma = derive2 { name="puma"; version="3.20.0"; sha256="0pcwppa2zlzpfl5fafl4h5xcf0pnyvz3hkykl192hzp26wcjsc1i"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.26.0"; sha256="0lmwy5a74ikq0sl6zqw69kag6q3p092qwh1lzvv7rl2j9wm2yl46"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.18.0"; sha256="1bjv97fq6cpa8j11j0zjpmpxyszr5a2w7z95r47hvqysi1mm7ypv"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.10.1"; sha256="02ffzf5hp6mp24pmsivsb8kfarcxqdb7a02narhysp1drccyywzr"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.16.0"; sha256="1agypdz696i868j7yzispmbljm5vc67zpfc3njq322bvgcfv6j78"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.36.0"; sha256="1lgdlggp4g19d47lv3wr87zj7lc50w433f2j9c7sc5symslqzrp5"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.12.0"; sha256="10xmdlc2h67krc2bbcpv2sjgv8vqdxn49knzpnn22rvgc3ab5np0"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.32.0"; sha256="0p8r78qrrrkmvbvlapwbdzd363y8qmiwmw3aiipmv959cpbsy2ci"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.4.0"; sha256="00fym964mlzkydmd6mmhd2hsv87lga5zg8cc6dglzwycmbmcb7cr"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; - quantro = derive2 { name="quantro"; version="1.12.0"; sha256="1vw44c0vr1mx5mc89i864l8d9hjp0pyrv6fdd1kzswzdi02nf8bq"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.44.0"; sha256="1n0q6mlmsidzw9qifplm9hhcxbx37hb6062mssw1klpmy2x9sfhg"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.12.0"; sha256="08x9v602fgdnzff0csiz5nwzmw8ld1z6yy607acncs0hnj16jvcw"; depends=[Biobase limma lsmeans nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.10.0"; sha256="1rd9rnf16kh8wc076kahd9hsb9rfwsbzmz3kjmp0pj6rbiq0051i"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.24.0"; sha256="1nahiwz98w788c63d140bjq664dhjmycpkmrcdv4s27hrwpwagz3"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.18.0"; sha256="1n8vlnxsn1n9c1vpss0zzlr2i088gwf34gjr7kvqmpyyplym51q4"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.8.1"; sha256="1dmxijdbvmjspc8p1k04as326p98gyjrkdwrhjnzm5jdxm87jjjb"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.4.4"; sha256="08hddkq1jpb24gp3id5w0bv48cqzx7h81mvdl0wvjsd8gz31nw2c"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.26.0"; sha256="1rbw8k20ri6jhqn9mgkjzyjp7s1z58bgxd5hb35zcpyd7fb2aifw"; depends=[Biostrings BSgenome IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.11.1"; sha256="040pvbnx935f49xgpj3wx64dfsf95f729sb93qmpn74ndpa1f3h6"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rHVDM = derive2 { name="rHVDM"; version="1.44.0"; sha256="1qw4k1xq4qq378dgymxw83ilw6sb2qk3zm6pk15br4v935016vgz"; depends=[affy Biobase minpack_lm R2HTML]; }; - rMAT = derive2 { name="rMAT"; version="3.28.0"; sha256="0cn7ffipgbj2b7vim6l0flw25nn0w7pdzxzz0m41n2jz18rm7203"; depends=[affxparser Biobase BiocGenerics IRanges]; }; - rRDP = derive2 { name="rRDP"; version="1.12.0"; sha256="0iw4hjhvf32ng8bqhqs0b2s882a8fcvpq4wq8ifrj27n5sxjs5gh"; depends=[Biostrings]; }; - rSFFreader = derive2 { name="rSFFreader"; version="0.26.0"; sha256="1a2m567jnb90ra8vk5wagc756h5fahss3hs4xxky1xgacpafyk5k"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; - rTANDEM = derive2 { name="rTANDEM"; version="1.18.0"; sha256="0a6w19kfdg3776iksvw60qyxbrjdvk7d02q5a4kcws1cn73dzpi2"; depends=[data_table Rcpp XML]; }; - rTRM = derive2 { name="rTRM"; version="1.16.0"; sha256="0bckbq0h1iy2vrv3mbzm9bq9r709hgbs240sa2dmf3bwn7329rxh"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.16.0"; sha256="0qx969aivrivccr443jvpvjji3zabp31jgg0cd4ddl5w0gw2i1pm"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rain = derive2 { name="rain"; version="1.12.0"; sha256="1nlz4vri4blqk4d7hzh8wsda8viwl80f4vhpfx04sxmsz5i9w305"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.52.0"; sha256="1g67sv7hm64m0c8g9z9y2pnxhdlbhpddyg6yx364klkx3gn017hp"; depends=[]; }; - ramwas = derive2 { name="ramwas"; version="1.2.0"; sha256="013gqial7zmalh4y2a97fp6262h3038mr2j3pg71vm7r4ww5q16c"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.24.0"; sha256="1qb7r4f8cjmn4wdpqydbqq75xzzxffqbh28dcfbbymcyvnc0vxma"; depends=[Biobase]; }; - rbsurv = derive2 { name="rbsurv"; version="2.36.0"; sha256="1v4fdlfl884w74w6rlap7rqckmk1kiryp2w0zciy4ghilkgikbf5"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.0.0"; sha256="1y5rzv9ggfxgyy4z5hm7awd8zb8n57qr2954p2j4ikhj62b6h6z2"; depends=[Biobase fingerprint ggplot2 gplots rcdk rcellminerData shiny stringr]; }; - readat = derive2 { name="readat"; version="1.4.0"; sha256="10pib536kmkpi3ij8cccxyap7zw0q1jfd1bcv4c38vn04jm3smaa"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; }; - reb = derive2 { name="reb"; version="1.56.0"; sha256="0sh9r77r2s3fmkbkwrazl705dqwr2wh0mx34pxhjfvfic0jc1r5x"; depends=[Biobase idiogram]; }; - recount = derive2 { name="recount"; version="1.4.6"; sha256="0gqv59rm9k5kcfiq99vxz9g86p2vy7znq5cd84bc7hg6qkva1ah0"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recoup = derive2 { name="recoup"; version="1.6.0"; sha256="09i0c2wv9c6hqc4mq6kklp0maqskpfxj871j44256dxlfh81xm3b"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; - regionReport = derive2 { name="regionReport"; version="1.12.2"; sha256="1fvkmd2yfkvkj44ldywr1z0l1cn7c64nq3920fhlarqygv92d7xx"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.10.0"; sha256="1vprp3l929hwzmvgskbhawfgnrymwc9n2rxd16rgagnv1dxnjxfp"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.4.0"; sha256="0gzm6xazidlkz33ialrxh47n1glx3bkz484rf7ily965fhs0vv53"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - restfulSE = derive2 { name="restfulSE"; version="1.0.2"; sha256="14sw5k0bhw059yn8lw6rd275j3756znp7pirdyb1srva53isgdik"; depends=[AnnotationDbi AnnotationHub bigrquery DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client S4Vectors SummarizedExperiment]; }; - rexposome = derive2 { name="rexposome"; version="1.0.0"; sha256="1lg3ms0zx60nbhb7y7bhcl49cf63g0licxjpqrmx2jg9w0ikfj5g"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr psygenet2r reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.16.0"; sha256="1m79rykh534iss41nw62j0dyx6v0vqk543m7dlgl7zm2kpyzdpc3"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; - rgsepd = derive2 { name="rgsepd"; version="1.10.0"; sha256="0r1adlc7dxwnm8h6nh4w05z3bffvr10cch7i68a7dli968yza2vj"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.22.0"; sha256="145858qg1xan6imxcbprzq3yn3mdf532aahdr6cibvdjg47hs4c1"; depends=[zlibbioc]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.0.7"; sha256="0hq812larfzim4cpq26mx6ckcrpz6p1m55xl2z9dk7zwqapnd2ri"; depends=[httr rjson S4Vectors]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.12.0"; sha256="0fg2zn5az1djdjnsrli26rl53ljrrjzmspx02dmgwf1a7nm7qmfz"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.36.0"; sha256="0y0mxzs24jz9nxcvjxymj0zxjfn1rlx3d8dzvdmfn98lbgyzm4dv"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.8.0"; sha256="050dc6asknh8snk6xkvpp5ivyikalslsawadh11lnw5wb4fixmhm"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.14.0"; sha256="1q0a9l3wrlpr0s9gy93zm6lpxp6b18kg8bm2hn0759b73qpqw2bf"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.6.1"; sha256="0xcsfgnsykdx4iiixsx7iafnzspirpkvx4bj5swfkmay6gfif27w"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.10.0"; sha256="05fr2s8ciqn20scr6b9i4bnss7ah2svyfg6jcs605w8vc1i90bmw"; depends=[Biobase]; }; - rpx = derive2 { name="rpx"; version="1.14.0"; sha256="004kq35qzk7a16vwiqxxc42k3djvwnay70hl65913z09cv8k48mk"; depends=[RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.4.0"; sha256="1i563yifxib3lib3x734nvkx7r1nnkp2x9hh7yrkrbwr6pp5hv39"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.24.0"; sha256="1568ipcnbgby4vwv0w8ak267dhg2ad5axxgir09xwxqdp3vm7cxm"; depends=[biclust Biobase BiocGenerics]; }; - rsbml = derive2 { name="rsbml"; version="2.36.0"; sha256="10bbvjv1ihps5r1rx4hrfmdssgvak1dy15098jk61rqdl50xrf8i"; depends=[BiocGenerics graph]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.38.3"; sha256="1khzfczm35k5lq9h0jlqrq01192spzjyh8s6is89spj006flwn4k"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.0.2"; sha256="1nccwf551jpskh4adg3swfcdg2qwvq17cjigjq0aqp8ymcqani8v"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRAP = derive2 { name="sRAP"; version="1.18.0"; sha256="0yh1a2nlr1cy82vsp8kqghzgy84mwig1cpdys68bapj3cdzv9g5s"; depends=[gplots pls qvalue ROCR WriteXLS]; }; - sSeq = derive2 { name="sSeq"; version="1.16.0"; sha256="08japi9dybqzvhcjj6yvchy94lbv62wbcd7kz3ilcygs6ykawqlh"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.18.0"; sha256="0wpbmisvgkz1axx930nh5dx4dmhgmz2z5g17k1ifyvigpap75hh2"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.48.0"; sha256="0g3jd86gv8zkdjqjd617b9chrl6gmbilhzsa7afkxzbqvr7k3h4y"; depends=[SparseM]; }; - samExploreR = derive2 { name="samExploreR"; version="1.2.0"; sha256="0hbdcybv99h1wfpnlwinkwnbiizprl0zvdrnqbw9z049mvw6dls4"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.3.1"; sha256="06l1clgs3xkv86pm7k4an5nbsiwykmclshcqdyyz820hjil4jzys"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.14.0"; sha256="162rmbri3il6xf4ifl46q7yryp3fhcxy5vyg3s7rnhk2c7scm2ss"; depends=[Biostrings shiny]; }; - sapFinder = derive2 { name="sapFinder"; version="1.16.0"; sha256="1xwm6ljpsfq2ps0568lk7ybab2x1zhijwgn6c1qvrwp674y3h51q"; depends=[pheatmap Rcpp rTANDEM]; }; - savR = derive2 { name="savR"; version="1.16.0"; sha256="1z50z5lf6x58phcsbrmy2pwz9zgm89yb0lpr9v4i5rd46bfi22ib"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scDD = derive2 { name="scDD"; version="1.2.0"; sha256="04d4h29kv8k3i92jpbckcakky6f7ww4mjgv9f3ha702c8vphp5c1"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scPipe = derive2 { name="scPipe"; version="1.0.6"; sha256="16day8ga9qp9y4aff2z6j1y9lclpzzl7nqw1h3pawfpy465kwif8"; depends=[BiocGenerics biomaRt GGally ggplot2 MASS mclust Rcpp reshape Rhtslib robustbase S4Vectors scales SingleCellExperiment SummarizedExperiment zlibbioc]; }; - scater = derive2 { name="scater"; version="1.6.3"; sha256="0q3s96gf8saa1dq2fvmpl0jyj7bx3wrdfck3hanb8pxkcir2p7dn"; depends=[beachmat Biobase BiocGenerics biomaRt data_table dplyr edgeR ggbeeswarm ggplot2 limma Matrix matrixStats plyr Rcpp reshape2 rhdf5 Rhdf5lib rjson S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment tximport viridis]; }; - scde = derive2 { name="scde"; version="2.6.0"; sha256="0cxaail8sa0bn56gp88x64p0k022hixh44s32i37al4wd70nlv12"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scfind = derive2 { name="scfind"; version="1.0.0"; sha256="1rm2sgdv3z2lxrlws227z6q8h4ydpbvnd37l7f8pask1nc6zbky3"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; }; - scmap = derive2 { name="scmap"; version="1.1.5"; sha256="0jqgk9sjb5bp5gbzq14vsif5gd5ry4213glvnpmhgqm23hmwbfhi"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.2.0"; sha256="1xq48d3z78p54iclb1ii074i7f88qfzh5djfiyrwf3k6gsapadfi"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.0.0"; sha256="04q2rs1gw7v97lwcialyswqzl0kd5c5298v60cm6wha25i6lwgbs"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scran = derive2 { name="scran"; version="1.6.9"; sha256="0cs64cnf0xjcgmawr210y99j3gxs6aqgh8081n9827kkqnx2y5dm"; depends=[beachmat BiocGenerics BiocParallel DT dynamicTreeCut edgeR FNN ggplot2 igraph limma Matrix Rcpp Rhdf5lib S4Vectors scater shiny SingleCellExperiment statmod SummarizedExperiment viridis zoo]; }; - scsR = derive2 { name="scsR"; version="1.14.0"; sha256="05xqrv1babqvlvr4m5k0r7yy4fbr0y46f3i4v4zcjilda1qf54pb"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.12.0"; sha256="0jqdddzrxahf6i7cmaay5v9ig9969avhv8ddh72v6ndfphlkfb64"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - semisup = derive2 { name="semisup"; version="1.2.0"; sha256="14q2p38a8r4ry8swwi88k96rchmcnplknq1a62lvm98k09k1887r"; depends=[SummarizedExperiment VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.10.0"; sha256="0wz9x4kv2zw21sppkmfp9qmclwffm5yhzx580yd3iggi1calq8bg"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCAT = derive2 { name="seqCAT"; version="1.0.0"; sha256="00m0w0l14y8k1viqv60n8p384lv80vnny3x9f5rmi1bba02kxkw7"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.24.0"; sha256="1qq217mrxi0ygafyy4fvbjxhwabvific2bj0iq7871dx4dq3mcf9"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.44.0"; sha256="1ql4q4vx0j61a893dqc3c8zxmgs8sqhy3j1qhyfdvbd01vw9w1kq"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.10.0"; sha256="1kcm5w83q7w0v0vs7nyp4gq5z86c6n6pqy9zmyyhxcrns7f597pm"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.12.0"; sha256="1m69xbd9p3mzwn9wgn30b6995lydn973dfz9l65c0f5qr59ww5ns"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.26.0"; sha256="1i1zqslv0qws12x45c37h7fkgpz5wv3v87h72n4pw8gh80bgcafl"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; - seqcombo = derive2 { name="seqcombo"; version="1.0.0"; sha256="0bkap2c1061yg2ws2m1fafxi37pqzkg9mzim5sqiq8sgcfmk6na6"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr rvcheck]; }; - seqplots = derive2 { name="seqplots"; version="1.16.0"; sha256="1plwmdq2hjcqs94l7s03h9amcxdimwdrmi11z03xn10dfn1xig70"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.8.1"; sha256="0v22pwyrgxh6mjqqcxz9ix7ripl5xds0l8p38w0w08ynbdns1w5b"; depends=[curl docopt dplyr httr jsonlite liftr miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.14.0"; sha256="17w7shgr4s5w3y1ik8zgr9brv7q87dx9l6dfqywsyvfmmkddimwa"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.16.0"; sha256="17x0bq1kzvmqqf30y0dmmp9777i62525mp4ysyv2m6vb9bgrbc4y"; depends=[mixtools rTANDEM shiny xtable]; }; - sigPathway = derive2 { name="sigPathway"; version="1.46.0"; sha256="18nn7rpg67dz30v1drm0lnsb1wnww7maxdg4gk960wayasp8hk2z"; depends=[]; }; - sigaR = derive2 { name="sigaR"; version="1.26.0"; sha256="196jj39frqi9vmdl592ihkji4vxfimv6xr9cbmlgnnpjpd68b05k"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; }; - siggenes = derive2 { name="siggenes"; version="1.52.0"; sha256="1g88rga3pksmydkqd117wsqj1i5hfzi3rkadac51n8bk0sx6rfmw"; depends=[Biobase multtest]; }; - sights = derive2 { name="sights"; version="1.4.0"; sha256="1hnzvx9avgvv4jgsgilbdyri9qqbf4sbcpyy47j31sg70ilzydxs"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signeR = derive2 { name="signeR"; version="1.4.0"; sha256="0rmdwjhp6ps9bvmhk1znarzg1kk319sb2rvxr51qwwka7idxfa0n"; depends=[BiocGenerics Biostrings BSgenome class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; - sigsquared = derive2 { name="sigsquared"; version="1.10.0"; sha256="0v68p83k43xx7yvxzknxzwqyvvccffi557dlz25wh8v8s3wkyk2c"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.10.0"; sha256="144mc40q2jgswk2w1ri5bh0cs8lgs0b6s1jwljrilfpvjww0r36f"; depends=[R6]; }; - simpleaffy = derive2 { name="simpleaffy"; version="2.54.0"; sha256="0b91hlsgq61rbwv08w2951dric7chvq1mfsp9716qvw7l8jqngng"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; - simulatorZ = derive2 { name="simulatorZ"; version="1.12.0"; sha256="1nzkaa6x0my1pk4h8naznckmzdd72wwdfxk6ivczbpnzxhnpz8nd"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; - sincell = derive2 { name="sincell"; version="1.10.0"; sha256="07p2ck9wzxw4kz9bzxq8kggmmy2yvbz939mcn43giag1chx2ndax"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - sizepower = derive2 { name="sizepower"; version="1.48.0"; sha256="199rqpbjp4l5faw6z9srfg7vs7kmdbzh12vm52s02v8mayb46mbp"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.10.0"; sha256="0s78dp3lg27x4qrs9q9nvi69vfrphncf5ivm15rf9k49smhr3bh3"; depends=[IlluminaHumanMethylation450kmanifest IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.0.0"; sha256="0jjr9k7fdvi4sg1ivnb65migcmyz3rg3fwm9gd50q6w80bs64g89"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - snapCGH = derive2 { name="snapCGH"; version="1.48.0"; sha256="12pdmmywr9lf44kna3wr59h1zyjck3734qw11ahhah40j5k247xd"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snm = derive2 { name="snm"; version="1.26.0"; sha256="14fpxl3h7673qffavknavjnlwcqk22qx3qh7i1p2i35gg3qw5rs0"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.28.0"; sha256="1x9qwynh2hwl24vq02naf4mchpch7xi2pkdrlgw896k28kx0lvir"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.10.0"; sha256="0jlpyq55byaqlnmn9n2k5scmm4iv7gzyl0ll7fn6ddhi3vxw4jxi"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.2.0"; sha256="0pbj09424a8f0xsr446bcxqgmha2zzmfvrcszknli1ai7isp23sq"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - specL = derive2 { name="specL"; version="1.12.0"; sha256="03bkh0z3pd6jl47wq2h6zd73fvaggwnaj2b4ibijwkg1643mfiip"; depends=[DBI protViz Rcpp RSQLite seqinr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.38.0"; sha256="00fixl9jpjfm0qgsg1lwi0315sa53j1j9fbrl69j8y2gbr8kgg28"; depends=[]; }; - spkTools = derive2 { name="spkTools"; version="1.34.0"; sha256="0vpyv78c6c58qrcz91mir7jh9gx2j2l48bclabvgi0k2156wpwn7"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.2.2"; sha256="05bqmck2hszxlvj0vb1j7fbyv4fp2q7bjv7ywlg6hs9bx7zk1iaj"; depends=[akima BiocGenerics BiocParallel checkmate edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; }; - spliceR = derive2 { name="spliceR"; version="1.20.0"; sha256="1skwj4cqf4s14df42jgy5b9fxrb5c5np9khc0wkg732qddbdlagd"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; }; - spliceSites = derive2 { name="spliceSites"; version="1.26.0"; sha256="19av0wkdvy4x4p0nkhy9ca450d6j0s68m2lp26116ydh4lzv4p8x"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; }; - splicegear = derive2 { name="splicegear"; version="1.50.0"; sha256="0i47l91p77s4acgrx9c8ll2va7amysw1g2acs36mn99hpz86v4m4"; depends=[annotate Biobase XML]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.6.0"; sha256="12x1lzcz8xih462nbzihdn9npypzr9clwy36vvwrfwh2plcq7314"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.44.0"; sha256="09zcf9l3mr3y650di1v5h47fp020n0cf5hp9ccjwf1480wwl7rpn"; depends=[RColorBrewer]; }; - spotSegmentation = derive2 { name="spotSegmentation"; version="1.52.0"; sha256="0jmhgk37na16fhlfqx3a6fhm7syyh25qh4nrwgc4f94d13hs70mp"; depends=[mclust]; }; - sscore = derive2 { name="sscore"; version="1.50.0"; sha256="0ivs9fb6ps0hv1ywja95x9xbsmljcv6zjkpvyb25a6l06vyjdh08"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.8.0"; sha256="1aa48cr8xxin9vzv280k7m4z6qy59gzclhdnj9gpxrh90kghv5vs"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.52.0"; sha256="02c1gwl4c6sf95k0rgahb2vbgwi53vlfz6nydg7zmqa3hvf16mr3"; depends=[gdata xtable]; }; - ssviz = derive2 { name="ssviz"; version="1.12.0"; sha256="1q8hvqpqniyfma8k2j0xpb8jnc05xdazh74kk3b0fkriqz11n8xw"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.20.0"; sha256="0f7ql6sc5dxk86ca4qmlgsbvzvw1h97y6jmzbrcvn24n9c3hkrgy"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.0.0"; sha256="0553av4ys27ag7v77mfb7wxw7d09g1f0vf4615jcjir9mvc6y3qj"; depends=[SummarizedExperiment]; }; - statTarget = derive2 { name="statTarget"; version="1.8.0"; sha256="0z6niv4i50f8b7g78c7rcdrniblvv5sq2phb7vd2glnh038r1rl0"; depends=[gWidgets2 gWidgets2RGtk2 impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.50.0"; sha256="10fd623pqy944q9l913bv1a3dh7wk4i0r211hvvzdr39kfhjl6mf"; depends=[marray MASS]; }; - subSeq = derive2 { name="subSeq"; version="1.8.0"; sha256="1z9qwfclhnnvcp4r4zfi201rmgd0hj47rd77x958m1d6d3z65m34"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.16.0"; sha256="10lhdhlb33p91np6ldmxc8yqgxwly7p37nlacm77q35dp05a453n"; depends=[ape hexbin MASS]; }; - survcomp = derive2 { name="survcomp"; version="1.28.5"; sha256="09winy33410hw6srybaw49m2nb5cyp3fx0ww9gyhhkh73cvb6xwb"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - sva = derive2 { name="sva"; version="3.26.0"; sha256="0q5xb68wfcnchy8rkv5ma67pmz1i91lsnvmwmj8f1c3w4xan3pgw"; depends=[BiocParallel genefilter limma matrixStats mgcv]; }; - swfdr = derive2 { name="swfdr"; version="1.4.0"; sha256="0ls0w09bkxxqv1y50d5c1s0qpxb1xdyall8ypvky8awi7v6jlrcg"; depends=[dplyr ggplot2 reshape2]; }; - switchBox = derive2 { name="switchBox"; version="1.14.0"; sha256="0mhkf4wwd3v3s1148nafbd6x6ys8j933glh4gp3wj24ddmmpxvb2"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.4.0"; sha256="0fxdg1d0jgqqas5cwmpcm96qfja0xw62x1421ahxfsrh1q6hqay6"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapter = derive2 { name="synapter"; version="2.2.0"; sha256="1m9s2pdm38wb5riyy0wf8g4a2ilrrkznsy9virdiqqm5kqzpkzic"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; - synergyfinder = derive2 { name="synergyfinder"; version="1.4.2"; sha256="11zpza9ghd1dckb604c5v3rxpgf6v29qm9yp1vpdnm04gfj2q6iy"; depends=[drc ggplot2 gplots gridBase lattice nleqslv reshape2 SpatialExtremes]; }; - synlet = derive2 { name="synlet"; version="1.8.0"; sha256="1pchh66wg3cvx1kq1l521lg7w0qpnw5azig339pnpwwymh9fpa5j"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="1.12.0"; sha256="11mj8pjq5vj25768vmagpzv74fvi3p3kdk5zdlznqyiaggri04cv"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.16.0"; sha256="1whnx5ka8jhqsis68drs7ah3dg5lj6vfw3a42l7s8mp94n0qdixj"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; }; - tenXplore = derive2 { name="tenXplore"; version="1.0.0"; sha256="0f57ak81vndff6xij2hn28xnrly1088sw7bc1jgfgzldy94mxn1m"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.22.0"; sha256="1k8s31zjyrid1wkhg5ighphi8nr8i5nbcd0sjqpjzv1zhi35hdaa"; depends=[igraph]; }; - tigre = derive2 { name="tigre"; version="1.32.0"; sha256="007lnj4hcq8sls8vdr59h7hjjsdjwk3i6snx97i8ply683ndc3ph"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.56.0"; sha256="0ahw51r1zsb47r2q90670ngakb34y49d3njwlchyk2r6vz3kzqkb"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timecourse = derive2 { name="timecourse"; version="1.50.0"; sha256="0lr4znyi82mqjm02wwr7zq6l2cfbq2gliynxim45xhahqp43cbpr"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.2.0"; sha256="0v3a7gn2d852h8m0053a57w153z4nlmp5mb5g96kjw06vvwr71jd"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.56.0"; sha256="0z1vd0nymyvvrn5jc97q33y9xl6w8pd4wzb6yyfjg8jy85kswfgf"; depends=[DynDoc widgetTools]; }; - tofsims = derive2 { name="tofsims"; version="1.6.0"; sha256="1zpq0c01fqm3yl2mkvx1yl2ajj2a933wa6h7hinrh3mdyix8pzrn"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; - topGO = derive2 { name="topGO"; version="2.30.1"; sha256="1cgz4knxr328xfqlhl6ypxl6x86rfrlqz748kn94ainxjzz55i6x"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topdownr = derive2 { name="topdownr"; version="1.0.0"; sha256="1yshm8a6dirnmda5ydx1ksndbbcrqlp25lrj1rqxnaclqb9xn0g2"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.14.1"; sha256="029yff299x23imqyk62cmxcsvdx34a6b4l9zp4p46iq3jb841h66"; depends=[AnnotationDbi GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges grImport Gviz htmlwidgets IRanges pbapply Rsamtools rtracklayer S4Vectors scales]; }; - tracktables = derive2 { name="tracktables"; version="1.12.0"; sha256="02l5n4sbwzig5kdnjyhhqpiwskaf8f4pqkra3m511vrqfpmd39f3"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - transcriptR = derive2 { name="transcriptR"; version="1.6.0"; sha256="0malha3w4vm21bmqdvn8y9q37m0ilghbyzmwgayvx9lvy3mfnk2s"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.0.0"; sha256="08yab83dkwjwbbgf05k05c32yn74ls8xy7lm3yr39sb3nfqmra9n"; depends=[biomaRt data_table doSNOW foreach igraph limma progress RedeR snow topGO]; }; - traseR = derive2 { name="traseR"; version="1.8.0"; sha256="1zqcz7w8pwc2vzjr137iv1bpfddh17kvmqaz7hgs9z1962704l0y"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - treeio = derive2 { name="treeio"; version="1.2.2"; sha256="1m92hrfgy3lca7x674qp41j2x4gpanfvvc7gsmxw3d1q7fwqlvwl"; depends=[ape ggplot2 jsonlite magrittr rvcheck]; }; - trena = derive2 { name="trena"; version="1.0.3"; sha256="1yk88mc3lcgm75wzqgl6xz4f1vk1i5q9qybr5m7s71m4dvwszgpb"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 stringr vbsr]; }; - triform = derive2 { name="triform"; version="1.20.0"; sha256="09hlnkrbzgk0vn1jcbja2i0hv54pfr2nzf33ik0rabrvv75zhb46"; depends=[BiocGenerics IRanges yaml]; }; - trigger = derive2 { name="trigger"; version="1.24.0"; sha256="16r7b0wy37pbylz9ch6516nygpxrb31qm42i8amh04jy60zw64rw"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.16.0"; sha256="1bw0cy95qrzmg6qiy9j8n4ydi734z3q78l1pnaxagdk1ji5ab577"; depends=[]; }; - triplex = derive2 { name="triplex"; version="1.18.0"; sha256="0x74ykqkjhbbarzgkdba090lw61n3wzpy4izsnnbawix96wqy6dx"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tspair = derive2 { name="tspair"; version="1.36.0"; sha256="079wj12v6x5df2cvmhwg241042h6lgbky4hpa36b3pd7z6pjsq6w"; depends=[Biobase]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.24.0"; sha256="1ms9psb5xagkxam117iksb1fj815jdlymddhlf3kv6hgyj4bx793"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.54.0"; sha256="0b7k6dw23814qgzwqxrvpaj3f22fmkivd32scspf4i2rzm33dh53"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.2.1"; sha256="0d8i2vr3db16nndgw4sy0kmkx7517pykvp48jsrw26n38gbbmvx0"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - tximport = derive2 { name="tximport"; version="1.6.0"; sha256="1gyqcm91hxg1kgjqcz2qw1n56yp9pymjzs50rwcpb2893dr8sp2h"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.4.0"; sha256="0zr6x9na95n055jk5csipvvd8dsf9pzqh7y4z4fhzfgj8bb2rwbv"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.14.0"; sha256="1d6khk7d6crrlhp3plwfi0d7nxvdk02ggnm4s5s6c5s3jpk64jra"; depends=[BiocGenerics HTqPCR]; }; - variancePartition = derive2 { name="variancePartition"; version="1.8.1"; sha256="08isp7j3dd9qii7ly8sf2glpc7x9r6dpc0ci4ix3l5diw2lq30xx"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 MASS pbkrtest reshape2]; }; - vbmp = derive2 { name="vbmp"; version="1.46.0"; sha256="01bzkdjpb5hv9h2pf4p4h2w19771wc5p6hvij7ywygdx560hb93p"; depends=[]; }; - viper = derive2 { name="viper"; version="1.12.0"; sha256="1k9yfz010v1g5ap900m1skaxc7ygy20y4xdc8a2c0dgfkclnw59m"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vsn = derive2 { name="vsn"; version="3.46.0"; sha256="18y62phzirj75gg6v5l41jwybmk23ia6w7qhch0kxc4bl2rysw6j"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.18.0"; sha256="02nws97nmlrpzwb5jqm3fmg38mp1qdf41hzwmmprhfhsymnmc4ch"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.0.0"; sha256="1yxm6yg7d65wh9rl6k5b6831y4hr5l9nnmfi0azxz1h4x1ghqbdj"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - wateRmelon = derive2 { name="wateRmelon"; version="1.22.1"; sha256="08imbxhs4ikm6panz3y64b24d2ghy1s2ksgd8siff53hg2v59rqr"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.12.1"; sha256="01b8aqwi7nd8l7mkiqgg9skvl0r6y1vwslwchyk95a9l4hkhxrz9"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; - waveTiling = derive2 { name="waveTiling"; version="1.20.0"; sha256="1dlz548vjnarz15mscmj56jp2hn810w0dy7xprxx22n51h7kb7jg"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; - weaver = derive2 { name="weaver"; version="1.44.0"; sha256="06fg8z4gp2mabiy9jrfwkrrz1r4qzzgjk3lxj6d53ii2xhq95vy6"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.50.0"; sha256="1kg6apnhq97ypmpx6qm2f7wip81f910mjlg9kmd9zzmhnkrhqamd"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; - widgetTools = derive2 { name="widgetTools"; version="1.56.0"; sha256="0xkasd8z4sy9dsb2r7k3x2vhbqh9md39bz3qqwjsz8hgl6f0ggsr"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.2.0"; sha256="1scqvmh16y6c81qlvfa8y9z47p8wl4lccq0sm5wy4jay6zch8mn2"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - xcms = derive2 { name="xcms"; version="3.0.2"; sha256="0qk9mjg4qdv88vmcsdalf59za46ifikxp7snwf5a6n3jaykzx4xl"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer S4Vectors]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.36.0"; sha256="0jv07kgjh3jkk61bw92kr3s10sai427f93r5j5hjzjhn6wzpahqy"; depends=[]; }; - xps = derive2 { name="xps"; version="1.38.0"; sha256="1xmsbjkcy04nz1npbr2bia1p4x4q6b55mmk0vqkphjl6x93dw6c8"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.4.0"; sha256="08mq0f27if86wacck1317fhm6gchxqzbj2vj9sxasr865jdzr1r9"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yaqcaffy = derive2 { name="yaqcaffy"; version="1.38.0"; sha256="144kz9q7ahrvv5h6r96pva039s1ms2pz5rsqkx1hv1jjb19070lg"; depends=[simpleaffy]; }; - yarn = derive2 { name="yarn"; version="1.4.0"; sha256="1gr7nwhp8gpzv6zbwh56q37bkgq1g61i1lhqsps40izwr2ib8qiv"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.0.0"; sha256="1bj2a1m0ivnv604796d1x4cf9y2nwwbsql5k3vvv1gvjp7wlp81v"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zinbwave = derive2 { name="zinbwave"; version="1.0.0"; sha256="0r7drhs77brk0p47kvz8s0xcwpsrgmwrqzzshs84ip1sgci41iia"; depends=[BiocParallel copula edgeR genefilter glmnet SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.24.0"; sha256="1zr9hbh55hglfpy15cpxwmddxblhyb0an15953l3rbhmlh2vpy92"; depends=[]; }; + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.11.3"; sha256="08rrz6binj0hilji6gkdmqvwj0hp1b9rk6jx10gvn6wi3hg1nv4n"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.35.2"; sha256="0x86y1j8h9ad4vyzadb4xngzfihz73jcy2qrn5d2bpigv3m3rar5"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.49.0"; sha256="1rnsk81lhybj612rb2b886al567m58ax77kng4ip43ivzd3yssil"; depends=[Biobase multtest]; }; + ACME = derive2 { name="ACME"; version="2.37.0"; sha256="1ihpzaxhpdg8lvd30g9xhjhsil34s7w8w06cy04dp7zv117yda55"; depends=[Biobase BiocGenerics]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.21.0"; sha256="107hm5klybm8lp12bjir6gjcka8a5q4c54nvq3sn0avvzcj5caf4"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.29.0"; sha256="0bidzm02g5f4ivnrymg9m7kpmjlg93zv1alpcsjx6ssbaix42r33"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.13.0"; sha256="15ch50fw03q66d7x0asri8ff5xr82r8rxd46i80zij1fg27avkxa"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.13.0"; sha256="01c4bjbybivjqq1hl9dpmndn3mfk595yyjjkljcxbza6wax99rd0"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.7.0"; sha256="12al115s0h3pylk8dv2d9kn241vqhdqww6y44md0ywwcpfrbkdvi"; depends=[]; }; + ANF = derive2 { name="ANF"; version="1.3.0"; sha256="0386q8bx4r00i12l79k0yi17f9kj1iw5fg3gg760pjspp67v810s"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.21.0"; sha256="1ipryh3wagasfz1kzhdja7mp6sfpl8xf01pi0nh2mwyah7k76h5n"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.7.0"; sha256="0p6q9zpfqf7cz1lb0cm75ddhhcrdf90dpblrxhn8hkh5wgn3yp0m"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.25.0"; sha256="00wwdg07zgqbaparqail1pnffx5r63007rq65shlxda483f3ywr1"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.15.0"; sha256="0f9mih8bhv4ibwqni7z94n4v3kz5cm2paqdp5c0y7hvg9i836gyl"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="1.1.0"; sha256="0a81s0yhn4zb8jyq889sz94rf22mrmsnpika0j1hs1sc3h2li3v2"; depends=[BiocParallel ggplot2 gridExtra plyr quadprog ropls speaq SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="1.99.0"; sha256="1c43xdlgqpmq192cxfbpsq6f767zlcmpm7am539673yr6fc8ql7i"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.17.1"; sha256="06rzdkdq66sl0lxbr3mvw6ybgs2laxyx7iaqgmjwf96b2j869jqb"; depends=[ggplot2 gplots msm Rlab sva]; }; + ASpli = derive2 { name="ASpli"; version="1.7.0"; sha256="19i2says6d2sl160537vzvj9iz5zmrv6xlyprv0787n7yswssy6s"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.5.1"; sha256="15spnf3a5hangks4k07gyjcnr6cjzxim4zjrjjilyx6jmfc7wiib"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + AUCell = derive2 { name="AUCell"; version="1.3.4"; sha256="1v53cq58jj3nvgrj7xrypmw0g4882yma950yc7k9189sdbbxxdm6"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.41.0"; sha256="1gxk7kggb29hhfqz2a1g6yqy8mbg0x7gvajnnqgamdggylg7zz32"; depends=[Biostrings RCurl XML]; }; + AffyExpress = derive2 { name="AffyExpress"; version="1.47.0"; sha256="1ph5vgm6hxifdyg8v3vgcqwm7k1fh4d3jnf10i4p7x4gi00xycan"; depends=[affy limma]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.27.0"; sha256="17m0sn1rb6485lvrpn677z3y540pc93ykbyjg1plrl3qby6nxc5q"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.31.0"; sha256="1hxvi9hdx8shikljwbh60k4ylir2hdibkccqd5wr4hb08spnam4j"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.19.0"; sha256="13cw6k6xgkillkj7jfgflgb42nfb85hj919yd1i0css4zi9gxd2w"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + Anaquin = derive2 { name="Anaquin"; version="2.5.0"; sha256="1cqrm7pmirdd23dw8lvrdjfkjp6rgx15s8h88jbilcv7qajg32jc"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.9.0"; sha256="1b0rrnxb8ldw9mxva42m0jj6r2xjn91rnrw409dmk365j8nxva2f"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.43.1"; sha256="150mxlr5fcid4vnv8gh0imr9y9lzgyxrmvzmah4l8kg7r5rllm6k"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.5.2"; sha256="12lkv4dg25r5p77s84xzyh3aw8pybcdrkvqf21n8xv41gxpycdkq"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.23.0"; sha256="07b8m6g4zm1lj6pxscjyg7b39km8wx68jiqimdd7ddkzj9xqyvg8"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.31.0"; sha256="1sf2afh9s94k1j9xx7csv7k1cah52s8ks7bhjr13m5c2dad3df1f"; depends=[AnnotationDbi DBI]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="2.13.1"; sha256="1zhnadp24h7hxjgdgp4x4c2iwnciw6gvi6ycxbql1yilqr3ip6w0"; depends=[AnnotationDbi BiocGenerics BiocInstaller curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.11.1"; sha256="1s7bfmynwx6y555bsxp3cgkfa3gnc0ll476qydszw4agspp8wyn9"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.41.0"; sha256="1xac01vhc8cdx7cp32qw4cfqyl20my5wdw3jf9mwb6qybjk557w7"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.31.0"; sha256="16j2a1qyhykzyqggfwaxvp4ay6l9ckimd4djh1qdp3ayqaign04r"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + ArrayTV = derive2 { name="ArrayTV"; version="1.19.0"; sha256="1swim5w679hskgwfdm9fbfdwhlra7wp4fgsl38vmainayna90xw9"; depends=[DNAcopy foreach IRanges oligoClasses S4Vectors]; }; + ArrayTools = derive2 { name="ArrayTools"; version="1.41.0"; sha256="1pkv72pkiqxjb0f642p7gdc0gfr7xg9vc96awi149a5z71bbykli"; depends=[affy Biobase limma xtable]; }; + BAC = derive2 { name="BAC"; version="1.41.0"; sha256="0jk4drgs8w1fvarkhm4sbkm9ls6vh67vja9f2f29p4n0ykgf06y2"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.19.0"; sha256="1y2lw5f6l32q3p3bral7bz2h57fvd7mpj00q4ds6l3y8j8grp3vf"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.21.0"; sha256="1j4284wvpabpzvb3khslfraz6wz5yznv9gsly5xaskximq1i1h74"; depends=[Biobase breastCancerVDX]; }; + BASiCS = derive2 { name="BASiCS"; version="1.3.3"; sha256="0rljf429zjglh7an6m09m0d8skykciksh2k8vjc6jm3rbsl4j1k5"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.11.0"; sha256="0nma095v38ysx0gjjrp6xslwmi78kgqqzqlmcvbf61qgbpggnqbj"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.43.0"; sha256="06082ki14mb4xrbx32lpi7q06bsnmjsc08ggx0si0fxdbf0584r5"; depends=[Biostrings]; }; + BEARscc = derive2 { name="BEARscc"; version="1.1.0"; sha256="169n512vaa23l3qaxxxa8x6zhy7jqmflsr43dn3k8qncwk1q7pml"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.19.0"; sha256="1c3csghkdbqmaj36bg75fnx626rp2myykwc4hpxlij1sy8a9pjra"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="1.13.0"; sha256="0swsrlf6rdxkdbncf5f18zxfimmgiay42i12lg5apb5rk9in890c"; depends=[Matrix snowfall]; }; + BGmix = derive2 { name="BGmix"; version="1.41.0"; sha256="1v6rpn322g4qp3q3hisvi419nnslzpfqdp37bdc1spmsh88inb1j"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.33.0"; sha256="18jpic1xk5gnxfw7r4hw0591lmrcncv412qd1q08l2nqw0a24895"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.5.0"; sha256="1cpy2dx1da1bn0wc43fwva2akq473ww4nz241dq5xfrk2hwwkz91"; depends=[Biobase graph GSA limma PADOG ROntoTools]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.7.13"; sha256="1ypinfv1z6gw73whx0fjkz9h6sl6lzwfcsnfpjrwy94q59rpzyw0"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.27.0"; sha256="1pssh10b8pqy7f4hs1akws8lvikd0j9rwblrzsymvnnl5qf8rdqm"; depends=[Biostrings lattice PolynomF]; }; + BSgenome = derive2 { name="BSgenome"; version="1.49.1"; sha256="1i0qrm065407zvi454gjdx3rykabf5zwl18l23d7zvl5d9cwcpv2"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.5.0"; sha256="0qs117jr903zyr55xql7793nr8scyqhfn9acnw4d29im2jwfhclq"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.37.0"; sha256="0rd0d1wm65q1x821l74y96w48dbqdlbd8gzz04fwz2lbpp4x6645"; depends=[infotheo minet]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.7.0"; sha256="18jvr700mqfqalby53jhjskz2wrfbyl3x6bgx28yxzzg0hk7d897"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.9.0"; sha256="0piq8lc4p23q2y3606kk9y52iwg7nc8jbnmicq44m2gnmp5b9r0m"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.25.0"; sha256="14p570w1ld2va2xjzk4aq64brx25h8mizcicyrvmlnppj7cwbpmm"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.17.0"; sha256="0ynfj4x0hkjxxza8v85kda2a5rrmwzjh1am3ffnv1mvpi3dnb95l"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.9.0"; sha256="074zndzd7dbz31khkn73a3jqfyacl56dd8b82zq5lykirw647zp4"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.9.0"; sha256="1vcpjbalsvlcmrg2wxckpkk1qczwhs5c9yzp7wyk0jff9ayccd7w"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.7.0"; sha256="0ikq8bk4viw9kj55cci37cdicbmyq9p5fa0vxw0bsa9ichj47cl5"; depends=[Biobase]; }; + BayesPeak = derive2 { name="BayesPeak"; version="1.33.0"; sha256="0grhyp7i834sj1j2kavpk2ydy0970gjcvllxy05l9vs9cilhczgp"; depends=[IRanges]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.33.0"; sha256="0asbgmcidblxj82w5bv0g0c5l9w2nzyr7qparbxg2inxcqimsa37"; depends=[]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.7.0"; sha256="07y8jh5r6rvx083gdcy7hdlpazmaj17mrbcqi6ysj8j0ipjxsrgv"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.1.5"; sha256="0rghzii29k5sqm4bnf86mncly5gln9kn14nzjxb9ycpmls33nfx0"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.17.0"; sha256="1nsjg5lk87i0mrby23jzfxs80cipq2dra4gx2v3mxphiqixrn92i"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.13.0"; sha256="10wgsw38774a6fzwhr98hxiangna3s1rb0i7dw2bvmkx9c6ldmbh"; depends=[igraph Matrix slam tsne]; }; + BiSeq = derive2 { name="BiSeq"; version="1.21.0"; sha256="12wnihb693dk6ri3hqcm7cjyy0r3dffvjcfybypl75zsj42k7zb7"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.39.0"; sha256="1gdglclrkrsxw7lks9rczhjy3ldsrl18qbk6h4f10d3rf6b147b1"; depends=[Biobase GSEABase multtest]; }; + BioCor = derive2 { name="BioCor"; version="1.5.1"; sha256="0wfd7sapzxj135wp6kga0xb8z5ycvvhwdwh1307sh0k8k8wb5pd9"; depends=[BiocParallel GSEABase Matrix]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.49.0"; sha256="01v6bzq8jsqd3p2cpg0hlfccqzkr9fk9zkby2dg1npwrf27x6j4g"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNet = derive2 { name="BioNet"; version="1.41.0"; sha256="039mzwvfamlxkqn9ipn7vab7qnnn0153sg7dcp4g5glfxgmqnngh"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.1.1"; sha256="1jr1z0shh0cspqmg0dqwwqhsljvl53aay19qpss5a64ifas8mzmr"; depends=[BiocParallel ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; }; + BioQC = derive2 { name="BioQC"; version="1.9.0"; sha256="0v9czgv6n57nczg2ijz78dfknvmlbxbdrsi8c90wiyxr888gkb3m"; depends=[Biobase Rcpp]; }; + BioSeqClass = derive2 { name="BioSeqClass"; version="1.39.0"; sha256="1390g5saw7jf6q7k5kavql595jw8xd8y53lwlfmxfgiapf2nvg36"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; + Biobase = derive2 { name="Biobase"; version="2.41.1"; sha256="0hfi88z32ma74mc2h0d8xx2m9pqwcwr77f6mfh21sqnkb5mqwsdm"; depends=[BiocGenerics]; }; + BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.43.0"; sha256="0xdn0zrd034mxzc6khqfnsp0rynfpd7zbxhmcmj5j0h83m9kyfnw"; depends=[Biobase]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.17.15"; sha256="06wzf7j170bf9msnv61da70hlhv08k5lykwzachij1396514ypr6"; depends=[BiocInstaller biocViews codetools graph httr knitr optparse stringdist]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="1.5.2"; sha256="170dyswpaxwg8jhw99797n5haixk7pm657dj09ydv8zjb5jaqhz0"; depends=[DBI dbplyr dplyr httr rappdirs RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.27.1"; sha256="1v2vqhixnn4caanpnmd0pw7jnczfkc79wlb9c7v0kwpz9h79h023"; depends=[]; }; + BiocInstaller = derive2 { name="BiocInstaller"; version="1.31.1"; sha256="1cprnjbymb2r1z228nyg6bbnridazw6bh6yh0mcfxq6h0cd0ig8y"; depends=[]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.1.6"; sha256="01g7drd8c9082kvpw5xyxmans8mksw0rm1s6rv6ml6ibzbxjrz2z"; depends=[bigrquery ComplexHeatmap dplyr DT GenomicRanges httr IRanges magrittr rjson S4Vectors shiny]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.15.6"; sha256="1ifav2pl6szvs6a5nkkgsf7j70i496q2lsj73gb3li4krm6yslvf"; depends=[BH futile_logger snow]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.3.0"; sha256="1dh0w9h81ydnnwf7dx19an7pja3n511pw16yl0bgmqr8ng51lvwn"; depends=[BBmisc HDF5Array knitr reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.9.3"; sha256="1ggbx5c94fr20mykkj3ghsia91c2jdi4yyhrm9jfwxdaxy9k8kfl"; depends=[bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.8.0"; sha256="1kyqzca8n7wggz6lfx7xj0i1h1s3rma15v11iycgkdka58443qqr"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.7.1"; sha256="04nxl3idhy3smyvp246vc28509i7hf5qv24zn366q012zdykywzr"; depends=[BiocStyle bookdown devtools git2r httr knitr rmarkdown rstudioapi stringr]; }; + Biostrings = derive2 { name="Biostrings"; version="2.49.0"; sha256="015yg11649nz6w0c8a6jsrjynh047phixssziid64rsff0gf13fv"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.25.0"; sha256="0ffqwdd5zjwcd819h3rg554c2drvi05l40ffg30p380azk0xkksp"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; + BrainStars = derive2 { name="BrainStars"; version="1.25.0"; sha256="0svlrnd131m2lrpafxcpzbjqj3pvzcsi6azk1f4l2f21yimmx2iq"; depends=[Biobase RCurl RJSONIO]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="1.15.1"; sha256="0fd6v87qhv7mjmsw5xs6r3bs52h1axm150jp6vng4ph20jq8gicg"; depends=[RCurl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.3.0"; sha256="0f4hayj2iinfqiwpl53nmnw0cfv9p6sz25ggwpz1pyib24n2n9b6"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.11.0"; sha256="0a69azv8v67jfdyg9mfaf58g1v3b09brhr2fvgl2lq7d48gi0cbh"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.45.0"; sha256="0qr9dsdh04msxva28n37shjk4j6a4m0i5v4plkk7qpvb6ccbvrf8"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.45.0"; sha256="1v2yh5pvjc3x25nq6cdqazm1x80ir2qz4jlmssgd31n1bz8r4x48"; depends=[BufferedMatrix]; }; + CAFE = derive2 { name="CAFE"; version="1.17.0"; sha256="1rgb3wk41q1079i959fjr81jwqd8r3rj0n781hfxbn9b5kia5inq"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.1.0"; sha256="09hf2xla5dl9gh59aa024z23j5lnqdrnamf34fw0r2p394qfz9gz"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges grr Gviz IRanges Matrix Matrix_utils pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CALIB = derive2 { name="CALIB"; version="1.47.0"; sha256="1j486knj1l7chda7gdlkkzrrs7vwi39brzkshj1zcsn87r9j1j09"; depends=[limma]; }; + CAMERA = derive2 { name="CAMERA"; version="1.37.0"; sha256="0n0xvhcy3y84cq6q45ms56z4nrs6q762iqgxp266kpl93z16rw4v"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CAMTHC = derive2 { name="CAMTHC"; version="0.99.6"; sha256="02gv6vqahyy7fqy0vihqsvd811d65znfjz5jmshn03qp27av11wk"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF pcaPP rJava SummarizedExperiment]; }; + CATALYST = derive2 { name="CATALYST"; version="1.5.3"; sha256="1b2gfqzb9bp4k830lyn9d87xhzcdqb2vrykihp36r96gj1g6hdg4"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus dplyr drc DT flowCore FlowSOM ggplot2 ggrepel gridExtra htmltools limma magrittr matrixStats nnls plotly RColorBrewer reshape2 Rtsne S4Vectors scales shiny shinyBS shinydashboard shinyjs SummarizedExperiment tidyr]; }; + CAnD = derive2 { name="CAnD"; version="1.13.0"; sha256="07ypm7zz4hf64q478b7s2q46m3imcs0kjc77gkwxky3ymsvid07y"; depends=[ggplot2 reshape]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.7.0"; sha256="1yb8idgdka7psnwa7w94lsld8ghphhdz8kcyvp1na6l88lyc2iyi"; depends=[Biobase CCP GSEABase PROMISE]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.5.0"; sha256="0h45vf64fg0pkh73k2wplfi26w3j4rnh7gyfnx9ia5bkm0z7l2fj"; depends=[clusterProfiler data_table DT fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.15.0"; sha256="06xq5rwbbgxknymn061ck1vyqlb8l715cpf7k40w3l4v95h02jiz"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.17.0"; sha256="1i31ckwfw6nx0fpfg2g8zq83r6zykvkxfrqkib9kj4wvxx24kvcx"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.41.0"; sha256="0yvg2jjqs98lrrybpygc77npfj27h5mkdrh3y5mfd5s6jzvyc8pz"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.43.0"; sha256="1r8df0xvnhzwhbg1l1wp474f85j6l1g2ivvzmqxcqr5va1clz6g9"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.35.0"; sha256="0bas6wmdw9h8ablm85ggbb776nfxrf4lpfvv5rkahd10b35y3x4b"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.39.0"; sha256="0r3gvrinr7f5qn89v6rs5bxx4sjalsjl0f2cf6vzbzgnmdysarns"; depends=[Biobase CGHbase]; }; + CHARGE = derive2 { name="CHARGE"; version="1.1.0"; sha256="05zqkiqnc82bmb580f16v6d02kfq55sdrm0nxk86h5kp1cs8fryk"; depends=[cluster diptest factoextra FactoMineR GenomicRanges IRanges matrixStats modes plyr SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.9.0"; sha256="17zxbbdy1ibsj4991iazm6rny2x4xx7rzknkc6z348fzxk2m7g0x"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; }; + CINdex = derive2 { name="CINdex"; version="1.9.0"; sha256="1rixd0fylffc77hlc7cig7viwdhdy9r68cb3qba16sd5ywbg74gs"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.39.0"; sha256="05yx2rwnrzdsgbyv86iyy17qiz6sy91bl6y3qf29aid3yndawc1s"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.27.0"; sha256="152cwha5mg66vc1ax6k2mwnahwj0cgcs3khii747y3xxn4p8m0z5"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.17.3"; sha256="0gf354j2vynrjl3afbifqkd276q2qz2ywwc7661gqxcjz26jirxq"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.23.0"; sha256="14iadllrhjc1jp4njlr88bhjyb84f3gnbwjzld4n5v8s8ra8xj3a"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.21.0"; sha256="1l1ij3r0rdywm0k47iy66v3sy0i23pr8zly1blyzpbxaqhmks3h1"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.23.0"; sha256="1z1fs64kd575hmmzxa7hx0lxkvd93mzdygw3h4g1sa2fyr9xycfb"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.23.0"; sha256="1r8sv5rdfpc1qjhdmz05p6gny03r1rxzayiwwbkh0xj6iwswbqdz"; depends=[CellNOptR genalg]; }; + CNTools = derive2 { name="CNTools"; version="1.37.0"; sha256="1hzdyjkbwv5iwapkf7a04r55gi1m0bg2ckjkmj4v94kfc5031nwc"; depends=[genefilter]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.13.0"; sha256="1pjmrdxg56gjwzbzvs38pdziymhsny9wnj4f5xqkmnkw6ps7v0m1"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.19.0"; sha256="0xdkckwys2963ylj2mid10k9dwwwmsks29pdp5z4266z0z3r9x9b"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + CNVtools = derive2 { name="CNVtools"; version="1.75.0"; sha256="1x70y389szy3b6vimlpzjsqdg4kykmx01wfw8aks5hxq9z23vaik"; depends=[survival]; }; + CODEX = derive2 { name="CODEX"; version="1.13.0"; sha256="1zfg0ka7cvrd1pp4qv8a25crkq78v0qm73z8x4246rlyzvnnxds5"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.27.1"; sha256="0a241dbwj6q0x7r3af252dvdv9i07vbslz0nc532gwv8r56426pw"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.19.0"; sha256="025gd220j77l4w55k9kmpr3438ffbjhq93ivc124jq3yr7qmpfgc"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.9.0"; sha256="03rdyklmk31pzg4q6gn8j501gx5hh7awbx4xbvgnw0hzk8753lbb"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CORREP = derive2 { name="CORREP"; version="1.47.0"; sha256="061hyv2jxhjpwycv9c0s0881nsq1z3pm0jcn9simdha55hzb20hs"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.15.0"; sha256="0irkzh1rm430y5a67rx0rzc4bgb9zg9jyh768bgl1mcf3hjdqsgl"; depends=[]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.21.0"; sha256="1jnwr3jy0ak9nv4x6n9n5zfggmrr849y4rw8qq819ig6a3swafqz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; + CRImage = derive2 { name="CRImage"; version="1.29.0"; sha256="1b5giadnwi8h4x8bmkw5064grhaijmnkidbbd8fi2pc1pz406fli"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.33.0"; sha256="1i2amxpka75l91bhvfdwzs85hcl9c11rz82l2xsjybj0ff3v0m91"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.19.0"; sha256="1ic79b6cg68ylwj9r7ak21m1fbwrys3kwcllmhpdf8v0fldk6qld"; depends=[]; }; + CTDquerier = derive2 { name="CTDquerier"; version="1.1.0"; sha256="00y2cm7sbzkb7q8xn4jqh1478v6jhjrcmhgc2y3h13abb0v93xl0"; depends=[BiocFileCache ggplot2 gridExtra igraph rappdirs RCurl S4Vectors stringdist stringr]; }; + CVE = derive2 { name="CVE"; version="1.7.12"; sha256="0v39bkic6wxhh2asj0sf1cb0amvrli56ni5dxy6ilnka8437ywyw"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny tidyverse WGCNA]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.1.0"; sha256="1rpphiy5bda3gpfscgyzci5dynyqdia5nb720pdjzxbz9xkr87f5"; depends=[BH Rcpp]; }; + CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.23.0"; sha256="1dxw34fbr25q20k7z9isl4r0w5gz8jj1a0hd9kb4nqhm1yzilpai"; depends=[AnnotationDbi limma qvalue]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.7.0"; sha256="09c7k5789i4afsgk1vxbz036s5gyxlnwmmwwpcgq0v4y920s37w3"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; }; + Cardinal = derive2 { name="Cardinal"; version="1.13.0"; sha256="0iq9b3357c0drhy0yh1rk71z9bh7g6dxh4wwjvwig1bnd3wy506d"; depends=[Biobase BiocGenerics irlba lattice matter ProtGenerics signal sp]; }; + Category = derive2 { name="Category"; version="2.47.0"; sha256="0nrac7r5f13byc68h38ii1jld3m7w63qr340mnaylc2vc2ics6jz"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.13.0"; sha256="0npjg5zg4ckqhgjayb0rxvaaggbd52n61bs7mba6f20dnq1x0q5j"; depends=[igraph]; }; + CellMapper = derive2 { name="CellMapper"; version="1.7.0"; sha256="0jxanbmhi4004kilhdd19fp12yyjx8dcy91iify4ivrhp9c4xwr0"; depends=[S4Vectors]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.27.0"; sha256="0ig7g50lmy8z3b00adkanmr7nz56nf35ayfbxby2phpxirqf15wj"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; + CellScore = derive2 { name="CellScore"; version="1.1.0"; sha256="11hsyz15b8kfmb8vjgpwy5hgkmcizlv4ygnw0ffmkvpnjmlib4rm"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="0.99.12"; sha256="10fn3vkkvjva6np8nkb39dxwkybac567rc0xxn09wlnxpqmfh8i7"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.19.1"; sha256="1yga6kc562ginzzb0cq8icyjkbj599j9q4hxzgd6hhf5590nfjfy"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChIC = derive2 { name="ChIC"; version="1.1.0"; sha256="1nh1dcqzf3m5gpkgblf7lx599c8dxm7gk53d7y12a7mdlrnzsh5j"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges S4Vectors spp]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.11.0"; sha256="0lia22xjj1w8m7hwpfcyaf6cldk05f78v93x3p947xdrkymx6lgc"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.17.0"; sha256="0d68nizvlp9gx9s33s5ll4pmrp7rhpjd3xqc8pngc3zvwa4sjg96"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPSeqSpike = derive2 { name="ChIPSeqSpike"; version="1.1.0"; sha256="15w26zchxjggz8236afgykdncdzim9n3lyr4bm5p7qxzqs8aigbv"; depends=[BiocGenerics corrplot GenomicRanges ggplot2 IRanges LSD Rsamtools rtracklayer S4Vectors seqplots stringr]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.3.0"; sha256="08cwdrafzq4ilvck21dc49nf0mjb27vbxrb8i860pfdd77i08hz4"; depends=[Biostrings BSgenome GenomicRanges IRanges RcppRoll rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.5.0"; sha256="17w5qibbn4gpvmzndmh3igzbkvzljk88nkz7imld01n8wp4f0kni"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.15.0"; sha256="0hck74qkrg4m9w30lag9jfv0ikh2q9d95fa73zjcbdil7n792l7k"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.17.0"; sha256="0002vn7kw83c8lzyrdkwi5c3vpkld3xihfa8zlx6hz41221im2vb"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.35.0"; sha256="0q5s9pzdmiv2z6cjvy24nzpqsblr2p60qrd8kdgkh8hxx6wq79f1"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.35.0"; sha256="1rz89zn383j8pa3g3rgabiw6zcg9h1nfbrmln4vwbbk6yk877l5l"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.19.0"; sha256="0w9pr4k12a8c8h69ycn231igd74a8m72v1icii11jiijl3i9hfg3"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.33.1"; sha256="1dzm3cw6i3k38p9i0yzf0bcad8zqvkip434k11ppplk5ch923rzi"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; + Chicago = derive2 { name="Chicago"; version="1.9.0"; sha256="0b3j250w0piasfs3jbyycy9w4snvrn7vbaq31hhj150gjvphsgzk"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.35.0"; sha256="18xgngy77rj8q91bj9v8kpzqijz15ax5w9db0xiyrspvi39z4fx4"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ClassifyR = derive2 { name="ClassifyR"; version="2.1.6"; sha256="0xnayr0w00nwmg9j6x6kl6i66l46ai734ifmgvdpgg18d6zi7zhr"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; + Clomial = derive2 { name="Clomial"; version="1.17.2"; sha256="0kl6fbgrihbz2qk7gzpdjclh9x874kb0wsk3615b21ra9qdfl3va"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.29.0"; sha256="0hlrj9rl7d0wzyk6a95p68gx76m34bfgxvpz68r3qhdzi0z0lxbn"; depends=[DNAcopy]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.3.0"; sha256="1zc019s15skjnzjm0vb5y3z4rd5cnk1awnvwxwj062y3pzr5kp62"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.9.0"; sha256="18j2jscwgmv2hcsi00182n03rvcqyaxbazzplxx5jqrgmqqzngmz"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.53.0"; sha256="0xy1zy4951r9xpjmhia8krrc429azbfg22nqzd9p0jcqflfj2sq7"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.1.0"; sha256="1ra3p9dqgpyfn3f4jq0jhamiiais0y2pli4qpyq3k3x510810mkd"; depends=[BH cluster doParallel foreach ggplot2 gplots RColorBrewer Rcpp reshape2 shiny]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.19.0"; sha256="1m532i7r1bz3dg5p2h8cfgligds95v6a57kv0xzan1gn37pys9g1"; depends=[arules igraph shiny]; }; + CompGO = derive2 { name="CompGO"; version="1.17.0"; sha256="04f22n17b4cyv1mapimkmc913d22cpvifdznfgqgbmrkjsyygg2k"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.19.1"; sha256="1wdbffj94jycbg95gpj8c5bdll2697v9rhqanv075373qa8f1miq"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.45.0"; sha256="1ypfclg252j9d7v78r81n14f0gsaxgzk6n1509rdv010h0xbaw2q"; depends=[ALL Biobase cluster]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.13.0"; sha256="11gls7dh4n4kd6dijvly5r3x918ivbpyriyz0y50333vpafm4swr"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CorMut = derive2 { name="CorMut"; version="1.23.0"; sha256="0y0sbnz3rlv98b87i7qcqv7zy1js180hmpy45fw55kmzjvd4j6vq"; depends=[igraph seqinr]; }; + Cormotif = derive2 { name="Cormotif"; version="1.27.0"; sha256="0spl1qg0p8za8w6ikiwsf4d1spx55g1b73vcbpxbipmjymwc408i"; depends=[affy limma]; }; + CountClust = derive2 { name="CountClust"; version="1.9.0"; sha256="12f2bazvyz0xvd9a67qxwii30441nsnmxd89706h4k1ba1zgp436"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; + CoverageView = derive2 { name="CoverageView"; version="1.19.0"; sha256="0alj0908pfih5z5zyi5szkimcm73sfsbqwpg6w594iglgyvbfbck"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.9.0"; sha256="18ww7xjykyrn0fh07b341pzg7zypd4hmq2adpn6m331v7v91m3dw"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CytoDx = derive2 { name="CytoDx"; version="1.1.0"; sha256="02zh10icpc0iv0bcyayr6bcvbjsvgbq9whg7mnlqlnf8x4hx6mk2"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoML = derive2 { name="CytoML"; version="1.7.7"; sha256="0qr52pq6l04w2y0dqkh3vmyyxjd3jc0yh8yvx1hxy2yglvdb9mpw"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; }; + DAPAR = derive2 { name="DAPAR"; version="1.13.0"; sha256="1qv5hgwcxpxjy5p0rbsr12wcplqvhyr2qwa1yr26ga7wqspbqg5g"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr foreach ggplot2 gplots graph highcharter imp4p impute imputeLCMD knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot]; }; + DART = derive2 { name="DART"; version="1.29.0"; sha256="1akgln0w3xbvis0pcgjdm07jbbfsg0yn732gkvh1hzkpg26iwgfr"; depends=[igraph]; }; + DBChIP = derive2 { name="DBChIP"; version="1.25.0"; sha256="1c3s5ffbdbhsr35q5mxs1vhl3glrjfwnpng11xlrcsj9h3jpxhva"; depends=[DESeq edgeR]; }; + DChIPRep = derive2 { name="DChIPRep"; version="1.11.0"; sha256="00r70fvr49fy4xmyyspgwiqphz96xcq9pz5c0srprrf4az71fl96"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.9.1"; sha256="1b09amzwvchh56wy0bs2f6hgjrsa09hdpqql6ywkj7n7abg022vf"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.1.0"; sha256="0swqxmyqlh05albirm8n32wl31s4gbv45qn9c5mpdpvr6zsldylg"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; + DEDS = derive2 { name="DEDS"; version="1.55.0"; sha256="0823ycm0j30dh1pbpxbcfwqglpff72675cr4h18rk0fx0v742vhy"; depends=[]; }; + DEFormats = derive2 { name="DEFormats"; version="1.9.0"; sha256="1vd3dnc38mmgkw07qbazra8928c6r8wcxcizq05bwgjqhwfjdyxs"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.33.0"; sha256="1xmawr15c8nxw8hgh3ijq2cp6ynkb8xana6zfidcibwmgfs7zlw6"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.17.2"; sha256="1zf1fryw0h1kh8hwi0v6xkvr22gi7qbynn1j2fmx9n5n2246n3ad"; depends=[Biobase BiocGenerics circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.35.0"; sha256="0kynaqbzlsldxjkqxd396xs5gfzmkvrkxhn14ihv651iviarwb8b"; depends=[qvalue samr]; }; + DEP = derive2 { name="DEP"; version="1.3.2"; sha256="0yy70j6ng0cdg16s3nmly2447857h0ks71q16c7vp2xgxjlqbipd"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.1.2"; sha256="04xla8cr3f3r1dwvahs55l93bzlnds04c42kx93lgyn5r2ksqr8n"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq = derive2 { name="DESeq"; version="1.33.0"; sha256="1h56v3d1kj8inh3xy08k6kfc31czyq9a2zwy1v2kibcaa79z4zrn"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.21.6"; sha256="02libh2lsna118na2lbc8hmd11dm9lia6gcnb59jqp69w9mmmpyk"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.27.0"; sha256="113dircdkngrrsb50mk3pp4x4nis2b27j020blxra3i9n3g2zrq7"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEsingle = derive2 { name="DEsingle"; version="1.1.4"; sha256="0nzm9nw9rqmk13vz7vyqjiy096m1vka51pqrs830yyf4vq69g457"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.7.1"; sha256="0wj89308s4rq2d1i1f6y79wj2fpk0gk2gzpfam0x5pfppzz83cx8"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL samr]; }; + DFP = derive2 { name="DFP"; version="1.39.0"; sha256="10yamzm28gnayrjc58jvj6mjg2j6gr266f65i9rrz5shnz9244wl"; depends=[Biobase]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.3.0"; sha256="0076i6d9qpphbxrkz0maqi6qsviix0sxckz6hg5mwrymsawssh48"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.7.4"; sha256="1gdnn3kzlfhj3vp4j1r7q8ggfqq5jmcx1jyrpd8wc9pn0nhnamiv"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.13.1"; sha256="01ip1xgyr1jjmrg85agbxxg4b6ihy9jkxfrf1hjkpmi1qkzw8pxz"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="1.17.0"; sha256="19k6cl4a154hgasqk3nycb0wxra0yg1nvn3ywbsikn17pa6qiyzc"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.17.0"; sha256="0094pw863dnc57kfif490fabcsggplfdr5xh41asldydp2x1pwcy"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.11.0"; sha256="1hpsdybpj3dszjxvlh7x2j5xdrgyhx03sv15hlg2bn4jj6am4iiy"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.55.0"; sha256="1bmd22nmfbrcwvz9qk6rh4f81faxh7f71fk2pgvgdcz97kzl4g8w"; depends=[]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.9.5"; sha256="1am9mcfr1fab29p06ppyl74qsdpvbq716vbys0dx8r9j1bf7x36x"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.7.1"; sha256="0dldsqs807hgnfx59vl1q90hh1lv9x2dbxndbfi97yvzlkhnar55"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2 S4Vectors]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.9.0"; sha256="1q3zff7wrk9hflz1jzrs1g0pacsv62rgif0bhglsk1877iqj8nip"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.29.0"; sha256="1jwjyfx1356j0jxryf8f3mnl764fd5bz5p395z6ax8xsafzkabq1"; depends=[Biobase bsseq DelayedArray]; }; + DTA = derive2 { name="DTA"; version="2.27.0"; sha256="129hvbvdgq7whh1f63gdh28w0g5avl3xqwvjm61makyyqyx47ipf"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="1.5.1"; sha256="0zli040zjbgphlg2f0bxcb69nlhzzfzjr91cs8999p8hb80dml7l"; depends=[arm caret corrplot DESeq2 e1071 EDASeq FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.11.0"; sha256="1fmswncd9jp49ni7rpg7xkcrnz2nh58xj9nyig1098hib00y70ml"; depends=[KernSmooth]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.23.0"; sha256="0hnnw6k246a0dsj0ppfrj40ddrl3czpdq28gvkahyig64ljwfrbm"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.7.0"; sha256="198apfr10nfnk82zhmsnk9vpq2ykfi6yh79gwdnnkls8h2r5nqz9"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.7.18"; sha256="1a2a558xc638prbb96xfkd97m40cf3hdv3g40r8a1xfw0vk9669k"; depends=[BiocGenerics BiocParallel IRanges matrixStats S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.3.4"; sha256="12ljlbk01p9cv8vwjapq1nknvsqf3qp44qh4yyq1j5cr8l8rg2xx"; depends=[DelayedArray IRanges Matrix matrixStats S4Vectors]; }; + DiffBind = derive2 { name="DiffBind"; version="2.9.0"; sha256="0ka72zizphm2sphr8gm53602wgm7rkfc6hx0fql3cb34yjg11wi1"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges ggplot2 ggrepel gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.5.0"; sha256="00vk5qj0byh8ggg5nmaa94ddbi42rl59y049bxx37qr98qyw79yj"; depends=[cba]; }; + Director = derive2 { name="Director"; version="1.7.0"; sha256="0xd8fviwd59smfzvrvwszpv69a74606w8iwds9gq8yi8s38288bs"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.23.0"; sha256="1wxb094p90628bbkm4vzjrpxcagcpm17iqa0f1hjfy7b8a1my9wh"; depends=[BiocGenerics IRanges S4Vectors]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.1.0"; sha256="1n2hr24izsd3zvxc795zw7678kwz4glaz09r49s0wr1lp70rgzb0"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.3.0"; sha256="1yfywqzxjj88wwnwmrm3yd9z1al74w2xzijzk1zqdjy5lg8vc1qn"; depends=[affy calibrate corrgram d3heatmap drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.21.0"; sha256="0ja7jpnh2rh4gkcv0h99mma19rk07y1vmh4hpkyxg1m1mb1q4vyv"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.1.5"; sha256="1yq3ijm3g71gh9gp72lwr7dzq395j548xvp11vrn0bp867rx4b5s"; depends=[beachmat BiocParallel edgeR Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.23.0"; sha256="01hrd65q8h9r09y91vnl7x8gczgi3q8vlxihyingxjdc09qn86xd"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + DupChecker = derive2 { name="DupChecker"; version="1.19.0"; sha256="03bfyg1h08ya41svmvnyd0mxs4qakrk7xwpyv2m51cn3rk2cgacl"; depends=[R_utils RCurl]; }; + DynDoc = derive2 { name="DynDoc"; version="1.59.0"; sha256="1cdyv6ylgdz7fyj8dnndy5y0khg0na8r7sss5p1pja73idxdqpvf"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.23.0"; sha256="1v9lnyc5x3xwrabqgr4l9mx67bgwbq4gyyimq87pm1id5p3vpb9d"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.9.0"; sha256="14bgrkfx93gcr0j9fj48krnfvhnbjxnqanvnx85n5x48bk40s2jr"; depends=[edgeR limma plyr]; }; + EBSeq = derive2 { name="EBSeq"; version="1.21.0"; sha256="0nbw3mkqgify3yijwizdznafvfyd4qizfqaj5f3w04nx0h8m8b2h"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.15.0"; sha256="067fi2vy35y3n6a5264a7af3j03jg46fp7vzl80ca7x8vqji4xvy"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.45.0"; sha256="1wvim2qldy74qccgqkj6hwqxjhwm3sgj2gsr88qqh16gvfqy1w9z"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.25.0"; sha256="1xpihh3pxm492kqrf7pnz6sarz98hqhrgw3ybicja3cvn5ihlk1j"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.15.2"; sha256="1d7dq3fl9qmv5bll4vkbj4zvd9md44grpr4vdxk29wcjm6dzjyma"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDDA = derive2 { name="EDDA"; version="1.19.0"; sha256="1q15lj4sa76yhjgyzng1sr60aa1dbfyw51dphvg7n1c1jngqib0n"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; + EGAD = derive2 { name="EGAD"; version="1.9.0"; sha256="1k1bv3z5dvgiid0vdfc3kkx9b37qbafybqxvdc188685nfkkkr03"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.9.0"; sha256="1qasrnfmrnvk05v4w4yyj0wyp02jcg0ww8svjnmhhlqpyj256s99"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELBOW = derive2 { name="ELBOW"; version="1.17.0"; sha256="0g4ss21apdp6zsg70fl79f2xz4gwdl0ygyp03a636xpg2y6hbrx3"; depends=[]; }; + ELMER = derive2 { name="ELMER"; version="2.5.4"; sha256="0qzivgb21y1g7y7j7dm0y2w7w2wdvxsfxblp8q21rh5z1wxr696x"; depends=[biomaRt circlize ComplexHeatmap doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr readr reshape rmarkdown rvest S4Vectors stringr SummarizedExperiment TCGAbiolinks xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.11.0"; sha256="0snk2fcikj34s2hhfg9i5di92nd8lbg26ypvc1b1zcf7rj5yy07p"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.7.0"; sha256="01sjpf4s0gdsiv6pqjmh0jq582wax9za47qf619igyzhwy2crvp1"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; }; + ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.29.0"; sha256="1pj6r1sb3izyr2ilv95j3nl92297zxiypjipl1x3nrqpnjn7k032"; depends=[rJava XML]; }; + ENmix = derive2 { name="ENmix"; version="1.17.0"; sha256="0hk2qj8y976ybz2pxj5ldnr13z3l64s8z7na18ry85yvbv90xzs3"; depends=[doParallel foreach geneplotter impute MASS minfi preprocessCore SummarizedExperiment sva wateRmelon]; }; + EasyqpcR = derive2 { name="EasyqpcR"; version="1.23.2"; sha256="1fdfhclpyv6ls6misnwa4kvm9qlgnv65pqg58q2rqd2w012kic02"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.9.0"; sha256="131xg14zp0kqxwk1y2yfxb0sysf4ad97klrgsrnqkdbvjfz8wfa0"; depends=[]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.11.2"; sha256="1rfls2xz7v7bj27f07rzvlq4d12ajzbcpza11wq6jy73snvb29p4"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.11.4"; sha256="0lwlwpm1rjycj8nwiyiiv061bhchgvk231l3l4wrw3x1zif7rwhc"; depends=[AnnotationDbi BiocFileCache biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; + EpiDISH = derive2 { name="EpiDISH"; version="1.3.0"; sha256="07ln6hyq2lfil1xwackvhb2biay3ig6bvsyf2ll5n3glk938x02d"; depends=[e1071 MASS quadprog]; }; + EventPointer = derive2 { name="EventPointer"; version="1.5.0"; sha256="1fa6xq8kwwbp39whm2xp8si3kz5hfpndlga8mf2jjlj2gd3nf3xj"; depends=[affxparser doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph limma MASS Matrix matrixStats nnls prodlim RBGL S4Vectors SGSeq stringr SummarizedExperiment]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.23.0"; sha256="01syzl0q719fif0pdhn31hrwpbq14idwpyppcwl0b0156aid7lwv"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="1.7.1"; sha256="0jy93f8dy5mmmc0hdd97h4di4660878gfi7mhjwk7rhldrcsm8jh"; depends=[AnnotationHub BiocGenerics BiocInstaller curl S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.7.0"; sha256="0gwv7zjdwhsxi992qxhds7rbha3xlqfix6cxnipx53gi72cl5plm"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocInstaller curl DBI ExperimentHub httr S4Vectors]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.9.1"; sha256="0pg30fbiz2q45b06p5jmav4gncbl01003m9m8lk2ifi0sxvx4jn6"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; + ExpressionView = derive2 { name="ExpressionView"; version="1.33.0"; sha256="14h6jgdaikyjpf5bqban0ixscw3k28pczh0bsvnkhyb5916qfxch"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; + FELLA = derive2 { name="FELLA"; version="1.1.1"; sha256="0vqq9bzdy691c11rb2dbgvv0nwqqy8wdd397wjh991lfk3f4n3bz"; depends=[igraph KEGGREST Matrix plyr]; }; + FEM = derive2 { name="FEM"; version="3.9.0"; sha256="0nb9gp6x1crzrj9jgz7s6mq639iqp7zdf1q7qqv0ri3gcgw758jw"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.15.0"; sha256="0izn77dhzhsg69i893r9sy6qalw4qr120m6k5x5k6z9w01dgq47x"; depends=[abind EBImage]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.17.0"; sha256="1m3vcffnbyf27x481gx4xmxrknb70dk0ll08zd14kfvn6lf3cgf4"; depends=[fda MASS]; }; + FamAgg = derive2 { name="FamAgg"; version="1.9.0"; sha256="1vqkaa1cpzd2cdyql66skz3jkrnp5ibdbhwipkj82dgww9zwwkbx"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="0.99.39"; sha256="18zklgacbk8iv8i6rlmip8bcfwn9v18jpf4xb9p7pkadldphjnfc"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FindMyFriends = derive2 { name="FindMyFriends"; version="1.11.0"; sha256="0ij596qkpn4y5m9zmj6hcamrmjjm8nwqjm9d2g1wq28i5xrmra0w"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; + FitHiC = derive2 { name="FitHiC"; version="1.7.0"; sha256="071246cfl4iqy3nnl2c24n8sd9dkmjjj8cna74dh1km3cc6xb0vz"; depends=[data_table fdrtool Rcpp]; }; + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.13.0"; sha256="09kqhj41w7snkr1m29wmjj4n7acy821mv8kbb49f1mljaxz0v94q"; depends=[jsonlite RCurl XML]; }; + FlowSOM = derive2 { name="FlowSOM"; version="1.13.0"; sha256="0vw98kxlcyd9rwa2r9rgjwfp5f5pmb122w2xk1gfhsf9kqh7db7g"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; + FourCSeq = derive2 { name="FourCSeq"; version="1.15.0"; sha256="0d8qnalv97a37l0xqxi4qi7s03zxs81122h4rw6rpi03pn5h7i10"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; + FunChIP = derive2 { name="FunChIP"; version="1.7.0"; sha256="15pfl68yynvidx9r69xxf3zavn79savabam5yjjwqq7g9yvhzjw5"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + FunciSNP = derive2 { name="FunciSNP"; version="1.25.0"; sha256="0dl63s5f8s82www9maf10bbmss7ddbflq820lcq1zgrfcdr9a484"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.5.0"; sha256="1bcskcxcmv47rdgrw0i8rm4cn27jqy86rx8z83qnanbzqp4g7kgg"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.3.0"; sha256="031p9qa6cp4gxlgp8whswl7b11d24d4zl3m9fkqg3i461kjyswxj"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GARS = derive2 { name="GARS"; version="1.1.0"; sha256="0qczfvlywnqiz06ggvndmq32sg61qm7njg77fzml5v66anqsqmhq"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.7.0"; sha256="04bxpyc13mq7klkpkyw574cbk6xsjn9n91za7hvmzg5xfzgdr2rg"; depends=[glmnet Matrix]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.1.0"; sha256="0i8gyq3rk79ph099bivgrvl33c73vhrlqss0ms61zv8r392prvjh"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.1.0"; sha256="0jn3jjpr5z3nrhral7bphlxnc5mhg2nllpzf73j2i4q7dbyhjxic"; depends=[BiocGenerics DelayedArray gdsfmt IRanges S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.7.0"; sha256="01vyj5nhzs6g3drnybl5i5wj2n2x50wjfnb2q62r053rz7r4xpwj"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.11.5"; sha256="1vkxb4ry8ghl9c38lr5dkwkf5kjak0h0vq18k69fpj94dfkkn91y"; depends=[Biobase BiocGenerics dplyr gdsfmt GenomicRanges graph GWASTools IRanges Matrix S4Vectors SeqArray SeqVarTools]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.3.1"; sha256="0zp1g97xmigjarpbmfnay1gac5fjhcslrdp656gzafdah32k2nzl"; depends=[reshape2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.43.0"; sha256="05ad0h84vqkcp9b9966dsmgwl4r2xsg9wjjgwcfx00yc9jgg94lj"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.49.0"; sha256="0ylny4lni33hj1qspqig7iw9g3h9mz4yc9bj8cdf13w2qj4sjysz"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.33.0"; sha256="17qck1a7szkgaixkjzq2c4vw7kb7cy8sv609z3i8h0pljrprvx07"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.25.0"; sha256="0dr7vz9v8cfjg8vxxqs0c7i4vzvfdnp741b82radwb0ya4crfml0"; depends=[car]; }; + GGBase = derive2 { name="GGBase"; version="3.43.2"; sha256="1kwh6di0kgw821mh0gmgrm8b0mlbcyji5yc0pn4v836w0wc0amqb"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; + GGtools = derive2 { name="GGtools"; version="5.17.0"; sha256="06qldw101w7syy1m9ynq9rpxs2546yzn8zdmsp416aawn3qw2xjb"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; + GIGSEA = derive2 { name="GIGSEA"; version="0.99.25"; sha256="0k6njipzq9r6g9gkn9g2blkmhq752yv4n2127wxvxfi4kkwf8nfc"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.5.0"; sha256="1030cwbkccj2scjmszlzbxd28qgwga26hf86jly8xmw9qvpa77y1"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.45.1"; sha256="1cpjai8dxqb35xf2933rf4z08zmli760scz6s1zdzbgpc92dl2zl"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.9.0"; sha256="06q87139z5dgl0c4i8jhry15q9ah9k19kgjmadkb55lfsb3akazn"; depends=[diagram GenomicRanges plotrix]; }; + GOFunction = derive2 { name="GOFunction"; version="1.29.0"; sha256="08xyzk6hs3v263k949l94g6xq9lg5k86yzgqr89bmcyinsxlqk1j"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.7.0"; sha256="1qxvx4mk49k5d51xnvxn8wsw6dsidskpx6qddnm42ls9a4d9cypd"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.19.0"; sha256="0irpycjkzzdymg50zf2szgf7v4s2s0skfpjf5ckdrzskkjr2jzc1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.17.0"; sha256="0n0h9k190p1glmvlrdpa5xdxj797mfdzb109yj5wy981s5q11gpb"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.15.0"; sha256="0k1hiinzn4553gh6app0kvd84md0g3jydv1y2rlzrcasamba7xvv"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.1.2"; sha256="0w2f866j82qcyvjj2cn9cqmaxx0sijywbxhsqfkvrsr8vbkhbmgi"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.7.0"; sha256="07qpvf17w1cq8qxdg0xdygdgnk9dc15ar7422q0y54kcgnfq0zj4"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.47.0"; sha256="1dxzr3xnn60iy2xv8k0j1r9bz1lq1g1n792gzl308dsy35p25cim"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GRENITS = derive2 { name="GRENITS"; version="1.33.0"; sha256="1jgsk0wcrkcvf6cgypmdyj6zjfxwxan5xm88l1ycdrilfrx1g582"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.7.0"; sha256="1vbnbn7r4fjv2p2qn5681kg0yqj5s1k4hf5jj52qgzjrp2qs4s6l"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRridge = derive2 { name="GRridge"; version="1.5.0"; sha256="10kz82nj90ilkj6wlsfvqlqrikgm5qw95m02xn99vghs4bj3yh0d"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; + GSALightning = derive2 { name="GSALightning"; version="1.9.0"; sha256="1qwq8yawf0llik4880y9j3qzbl9py404wrp6p2738qjb1mxyx9nr"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.15.0"; sha256="0i1rapjvdyw596vaqvsk49qbbrjnz1pam34559ws767r70vp0nng"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.11.0"; sha256="1w3028l6bj92phwhnxs71vxc1wn1bbqac37f4anr8wrxw1bvngid"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.43.0"; sha256="0f1rh227kx0wxndvgc283jfml5v2zmf184ajghflpq2crhv0sj7j"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.1.0"; sha256="1ykpinxwz9hqpb8wjrv8jwcq4gmnjkmxg4b8akgdwlypv766smgj"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.41.0"; sha256="1di0d7zpsigi6k4bxfnq0yniyssxrmzdih3xayg6facpwgyhkp6n"; depends=[Biobase]; }; + GSRI = derive2 { name="GSRI"; version="2.29.0"; sha256="0g3nncckasyx3n6nq5aihahzk73h6xb1m8xmq3m046vz245ny76x"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.15.0"; sha256="1qazhsx6gfnywwkhxip962v4jr5njbf97k36nbnq20q0yavwgzhz"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.29.0"; sha256="1yay4qw83jfpg1sskh8aizwblj1cxvjb974s7hbrc9a8z0dlkcnn"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.11.0"; sha256="1qxb0mrrldyac16zfzkqcy11750hakr4hgqm8ai1cabr6xd5yna1"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; + GWASTools = derive2 { name="GWASTools"; version="1.27.1"; sha256="1w0magisa8rv0s1kppppas3lacrkmkg7finjc3bja1dh3npd1v5j"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GateFinder = derive2 { name="GateFinder"; version="1.1.0"; sha256="1blj8407nl6nsn8dyg31xj4ii8rr2rfkg35g1hf97j60dk53bmwf"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenRank = derive2 { name="GenRank"; version="1.9.0"; sha256="05g9mram44zs76m48rvplwdhdlhkygfxrzgdsd43was2xvyj6nvb"; depends=[matrixStats reshape2 survcomp]; }; + GenVisR = derive2 { name="GenVisR"; version="1.13.2"; sha256="1ca47n9ddnm20vjj7070wfmmd9ff8w58d5rd79sq23hszmzwyzlf"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneAnswers = derive2 { name="GeneAnswers"; version="2.23.0"; sha256="08fgg33yls55357a45zfcghk87z7z2lqzh8wfiina122yg29c7ss"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.11.0"; sha256="1nw97k4cxd7l35r14jq5mf46wa4rlfm2zg28x176z6wh0jlz4gba"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.27.0"; sha256="0bmhxzrg5d7v4lv4k2igl7ah8fncrggyziwqyhawavig17i1iqzc"; depends=[Biobase PGSEA]; }; + GeneGA = derive2 { name="GeneGA"; version="1.31.0"; sha256="0fdfb6x7rjg4ak5xbikwj6fmmrnr3hnsi97amn69w81087228b5g"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.7.0"; sha256="03kkfv7vj717brzdw346yapxfg414v84wncqqrv3si03q4w450mz"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm plspm rioja Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.53.0"; sha256="18f1nca21drjpv55b4d92zkgqr3zqhzp98slq6xfqvsj3rip6y5v"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.23.0"; sha256="1076pgsykk88dswza9m1bbh1nzvb5l1680h0q971vdvy1z1sks4c"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.17.0"; sha256="0dqsq1sd1ly6gvnpq3xcv9idr30kazx97jha9icv1g64d337l289"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.37.0"; sha256="1672nriz5r0gpgb6c9bsa864ap3ap68n1igvpf9q8mf3sw659m3b"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.25.0"; sha256="1lwszjpxp9bj0hd5z1kasq2qv49swji3ib1ljlph22wh0j9jimid"; depends=[Biobase limma MASS survival]; }; + GeneSelector = derive2 { name="GeneSelector"; version="2.31.0"; sha256="134l462i60mym5k4z46nfx1f7r2r0fa069v1jddrjfmcv3v0gbs8"; depends=[Biobase limma multtest samr siggenes]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.1.0"; sha256="0w8ydly5qi8cvdhhda2q3k8fj9k9v1sg3c45h4ki02vx19j2kap0"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.49.0"; sha256="1n9d1i45dcmp2irnsc5ak9pk33r68nzd84iixylwaj302l7yphjs"; depends=[gmodels gtools mvtnorm]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.43.1"; sha256="0agd99r4jhp4y2ix5qrbwrycy3r8pc1cwa09ib3mhg5jdszm6jr8"; depends=[gdata genetics MASS]; }; + GenoGAM = derive2 { name="GenoGAM"; version="1.9.0"; sha256="02f7xvsv4l27dqj6cxm363n67kkbyz26z36gl4mybcgivvdvmi6h"; depends=[BiocParallel Biostrings data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; }; + GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.41.0"; sha256="07vwj2pbrxgj3k673m8xrf3cpqc1g753fvj950qwmy4jmz6s8w04"; depends=[biomaRt]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.17.1"; sha256="1ck578vgv3ya4kgdacxspiqrx8150zic0va745f98gafx2cv7b66"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.17.2"; sha256="0n3rl6mlyn1q4rjbjh8dlbq7sy192jc2zy3y4qlaacmmfrw4sv5h"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.5.3"; sha256="0nagrdckv853kfqrajs8jr2zhmmipnw36nsa8nr796y6q7ldq492"; depends=[dplyr GenomicRanges httr IRanges jsonlite lazyeval magrittr rappdirs readr S4Vectors SummarizedExperiment xml2]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.33.0"; sha256="1dnj1drlly4ac6q29zycvyjaw50fl6l1iqwhsn5syvywb5ccmgh5"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.17.0"; sha256="08zjr3x7sn5fpqfl021vc8imdprd18hanyq7c2gwn5r0y30cyxrp"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.15.0"; sha256="0p2nsfwfxkl16iwv5apaikd6abbi21czdy7wh9kkyb4frh2938yd"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.33.6"; sha256="07allayr8aflgra393xikfd5zs1s8b2yrsw308dqdxjyc0i3497i"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="1.5.1"; sha256="1pkisnqp2rwdyxxm5504107scc0kds0ry07xmx451bn1i52lg3n1"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.15.1"; sha256="1xin5m11q94w64kcb6aqsi422cgbcagb0g45ir90dqf9d79v8vjz"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + Genominator = derive2 { name="Genominator"; version="1.35.0"; sha256="0qvzw9r8hn19gzkj6r94v4787h9lbw8y2s9k7zasn2cdyx55074i"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; + Glimma = derive2 { name="Glimma"; version="1.9.2"; sha256="1njcjla1az23lrg5j93s1hxjrrjsf808plmvdhiai14fdlgzfb8w"; depends=[edgeR jsonlite S4Vectors]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="3.49.0"; sha256="0y71r0biivxpyrjkl2132ngnz1fl5byi7rbig9g0j5svsmh9kk48"; depends=[annotate AnnotationDbi corpcor globaltest]; }; + GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.3.0"; sha256="10iwh4z3zpv8x239y8i5qpp88ygyg4fiyhsgpyld11fg3d1qkn4h"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; + GraphAT = derive2 { name="GraphAT"; version="1.53.0"; sha256="0wsn0nfj4qds2kxm3gxfx8wwyf00l0ifvk660czm7zc6ppfj1sb8"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.45.0"; sha256="0mdy8g3i4b7wy9zqfbb1zia1h84kv2av4yl6japzz5ymiipjaimy"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.23.0"; sha256="1wy20xjw6ikdjd66pk654dj5zcaxm2mn8vnwxr6s628x9c70rh0w"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.13.0"; sha256="0m9qvb3rw1hr119vq2k5fdbywq8vfgfhxwm6r9nfmxdhdir6178j"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="1.19.0"; sha256="0khy7vhr8r56r14kiqz83py227jaji46aqlqs8yhj7kh6cgh59c5"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.25.0"; sha256="0c64bn8dqvcwi3jdfx0yg2jc7x1v41h4py7ily9z82ms8lfv7jh8"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.9.4"; sha256="1ld8fm7zvd3kzrqynx3q8vzcbn1k82lim1fnhz449x4gxi6gddpg"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.15.0"; sha256="00zrdmpscbycmlli7qvx6vdy7nyckxfazylrx83qaffg9d7a9wc4"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.39.0"; sha256="1sb43vndrk5qbazxwx3n0lmkb43525vmarj3hbkqplid5bppcddp"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.53.0"; sha256="090k94d4bfmf1fqbxhlp2vb70x7934xwq8fjmgc2wlrq5d1iqjff"; depends=[Biobase]; }; + HIBAG = derive2 { name="HIBAG"; version="1.17.1"; sha256="1raldjan5w9fvvk0hrwydyb1j6rs3566ks07nhym16f7bzrml85b"; depends=[]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.23.0"; sha256="1ciawdh971fwfa60lb1469pqgmw9giyqksqk5zkfbal967pia1ck"; depends=[geneplotter IRanges]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.21.0"; sha256="1c85v66fax6h00dkny5308mv1vsdinj590x6w4aghd6b4nb16qgr"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; + HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.33.0"; sha256="10agvn6dcmzczj5xdpviisnamfs6642xskh7zgh14c0p13gv76xs"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.11.0"; sha256="0k6ql5pkn2yjvmf13g4lzrqb0jcnp0rqsvakkqmirpj2b40wynj1"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.35.0"; sha256="09wc412znd92fi3lm909mrz3xd9cjiwiw6b0ncki1yc186faizr4"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.9.0"; sha256="1kcv48g1fwh36xdw8cx0v28n4dl9s4414vwa0alnwdy2j0b9n8qk"; depends=[Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.53.0"; sha256="0nlghc13lmhvsy06spvzhc7cihpzayli1iyid7h7ifa8zik6dz72"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="2.27.0"; sha256="1fyz7272w2ixisvg0gsv30svppd6xd47r79xg1r1y2qy62q04bca"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.7.0"; sha256="1h88zrvx3h4s7jsadyf3f3x6p0hbkn2f6smnkdmm7fva4lhlg7hl"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.3.0"; sha256="1kj8aqq4ddlsh3xnrzbj3hid67ai7p7d4hk2avxscicyrrskkq8w"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq S4Vectors]; }; + HiTC = derive2 { name="HiTC"; version="1.25.0"; sha256="1mryn42bsvswb0gf027aw4qbrk57w8859zyvicymdi3d78pw8rmv"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.11.1"; sha256="0mv3ijx5506wng7zs556k2ljb11si73f9109hg3i8jl5qcn5zdn9"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.39.0"; sha256="068jm0ls9ix06w4argkaldfrsx6fynywh0776ygn0iaxmcjm2fpb"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.39.0"; sha256="1jq70si8q74jg22zg4gx4c6nbi8zszgiqrbc6cavn4v578fam3z1"; depends=[HilbertVis]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.25.0"; sha256="0g667li0fhf085ha9210xwj3r0sy7ks9lj5v8lpiyz48yi8w2nfn"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.9.1"; sha256="0h7gpmcnlahclhplfmi89s3ai3syg1cdvv2mc6nrx9kq7dckl3xv"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IMAS = derive2 { name="IMAS"; version="1.5.0"; sha256="0lwn1kp5z488yryx8zzi0b5kdm5kzycdbpnn6lbx6ixjkhs26fkl"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.1.0"; sha256="0sgyiq7wif4imq81qqgwhbrx54dr26gb22j79mzzjyprv8yxgdkj"; depends=[BiocFileCache Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.17.0"; sha256="0r5j70i1mdrpxjznmb6i561076n1vk1h371kvlxkb8y343ajz7sq"; depends=[rjson]; }; + INPower = derive2 { name="INPower"; version="1.17.0"; sha256="1ilqffcbaxwk54m297f4znhbphjjipjfd82554z4mwdrkf0cz2lw"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.11.0"; sha256="1na92547w6qn6dkhy3zp3gj1g3vr2y3kx6j78hnq0ch9l8k9s2c7"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; }; + IONiseR = derive2 { name="IONiseR"; version="2.5.0"; sha256="0gn75w73ahyk3vm70vq003rlg1wsazfy7qygdp4dnq0g9qpz8dyy"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.7.0"; sha256="096a1c2ybmki12kqj2y1njpjbsia4qqd3rmj851cmks9h33mxk8m"; depends=[BiocParallel CAMERA rsm xcms]; }; + IPPD = derive2 { name="IPPD"; version="1.29.0"; sha256="1gwsq17ipba4q7jby4hj7bwrpbfzach5spsvnb4571x7nr6yx7qg"; depends=[bitops digest MASS Matrix XML]; }; + IRanges = derive2 { name="IRanges"; version="2.15.14"; sha256="1w12vvyfi53hr45xhl1vzsygig9vdzlxkkyjsylbwc9ny595pam7"; depends=[BiocGenerics S4Vectors]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.9.0"; sha256="111p1wxyn3kqx6gdnrl55jwnlnqfa98wljkiw4wqqf2cdrykb7pr"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.41.0"; sha256="1lj5n1xgq49xn8yv8q6lfg01hw8l4yc5ffc98falzhlcvqxhkvzc"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.1.0"; sha256="0ipw8834ag1j2qg3i5nnfcncrjpzhd2m5hzhn1bjpvhd357r1gn1"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.5.0"; sha256="0v5q1ywvgvcwlfh7a9krh06b1ad4i5kpnm67az81znliz3s2m60y"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.53.0"; sha256="16cxm1i6ir74l2x80wsp544ykffy91m4fv8v283nki0hx434pkn7"; depends=[survival]; }; + IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.25.0"; sha256="025zqjc36whlraq3hjz0p5dzj5m19y50clrlgrimrz4ag5bfmf2q"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; + IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.29.0"; sha256="0fn8xp7ybpg0z3bnk9sab53y7kflzys0r1cvikyp5n8pfkrr95g2"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.17.0"; sha256="0yr7yisb9hr2jsdlv7m59p9kiaxssv6rj8x4rqzraaipd7cn0gcy"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + Imetagene = derive2 { name="Imetagene"; version="1.11.0"; sha256="1zswp6h2c9nn4p73knp4wsnbqv77gp86njzpxjvgqjmvfj57y8nc"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.9.0"; sha256="00v2dfzcxwffpss873j1i74vl1qgimdqamyx4gj4cqjv76qcdrqc"; depends=[Biobase data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; }; + ImpulseDE = derive2 { name="ImpulseDE"; version="1.7.0"; sha256="0g34jfff5lsvzak21fdi2fdx9a2v0n1f2cmjsk62jkjzr9jpyp2f"; depends=[amap boot]; }; + ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.5.0"; sha256="1f9nymih6fwq6p53x9f7zjblkdrrj0f89w1lv9f8bdz1y4icn1y4"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; }; + InPAS = derive2 { name="InPAS"; version="1.13.0"; sha256="0hk6lr9sk4yvgj9pw0w48936lmgz478k5jfbh1jmybixgx9cnl7k"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; + InTAD = derive2 { name="InTAD"; version="1.1.0"; sha256="0pm720gl7apzbcqxd53gj4ynkglv4bb0xrzibcwbpwgsmi75g55c"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + IntEREst = derive2 { name="IntEREst"; version="1.5.1"; sha256="1drlpx96rfdr94i3aqvwb839ivwb6y4kg1qqip6hh33shrh7hzf0"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + InterMineR = derive2 { name="InterMineR"; version="1.3.0"; sha256="0rsf9ssnzcsfynk3ifsn2g5hk8g8nlkli0x7b7p5x60w8pvawss4"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.9.1"; sha256="0zdsdqmym0s09fp724xfa53bfy5isnj4gpxwaircl6js44rdp0f2"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.3.0"; sha256="015mjy0fcch4z3nsy5jvyl6jcc6zigvfh4s35nm3yjw2plg06jm4"; depends=[igraph knitr]; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.17.0"; sha256="0fx9zkvg8471kcyda3hvp7zjv6d1z1pr2sq5882xn1amhcjpwws1"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.3.1"; sha256="19pzz6airm4jghr699g2sx8d0m8sxplmgyy09508npwxq5kkw4rw"; depends=[Biostrings BSgenome cummeRbund DBI DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges plyr RColorBrewer reshape2 rtracklayer tximport VennDiagram]; }; + JunctionSeq = derive2 { name="JunctionSeq"; version="1.11.0"; sha256="1pq098zb6ynsrxmvppjvh4ws642sry12hz1rsc53ph5n375blxga"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; + KCsmart = derive2 { name="KCsmart"; version="2.39.0"; sha256="1y5lrcl4inkdmbr9bma02j7g4r0my49jvc434mzgvjmv6zfilm4k"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.21.1"; sha256="1kk89li0nzp0g8p3v69c8b8ijqia9rz45139f56kl7vfvrr8l7yd"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.41.0"; sha256="0sd2m80q2igal5qh03qcdjpcyi6rxk8w3mxgd9rjars6ykcj0g84"; depends=[graph XML]; }; + KEGGprofile = derive2 { name="KEGGprofile"; version="1.23.0"; sha256="0y1whzp0q1hlrcg9qhba6fh5iimnqp6phvd7kl8phkyhi5zzsv9a"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png RCurl TeachingDemos XML]; }; + LBE = derive2 { name="LBE"; version="1.49.0"; sha256="07r55w9f7a5fdp183rjx5f15jzkw73q6r7ra7drk887xylzmxvd0"; depends=[]; }; + LEA = derive2 { name="LEA"; version="2.3.0"; sha256="1k7zxl6aa09kr2gmh6lhg1hdb332fqggdi8hk4gbjcgsa533sqcc"; depends=[]; }; + LINC = derive2 { name="LINC"; version="1.9.0"; sha256="1295829apimwfiyhxzyl61wlabd7j18zdycrrai2f3d42005pfjw"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; }; + LMGene = derive2 { name="LMGene"; version="2.37.0"; sha256="1pkgkn12bgmamfcbdi5c352v92q31rzwcq69kh00z7wb07flcmf2"; depends=[affy Biobase multtest survival]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.7.1"; sha256="16agj2lk871hqnwjrwg59qxsblr7gb2pd5y5h734c2san34y09r3"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.11.0"; sha256="1pgxwcbd0sdb9npq6sjvbjjlqq13750795m9ycjz3mg2989y4rn5"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.55.0"; sha256="08pghdnq4l4zj21q3jz77x2hryjps1jk0rpdlv9kr207f535ww9l"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.41.0"; sha256="0sjhx44m1rfkhpq87996wc7n8axz2k8c4ni818rx78cqpha5ybjl"; depends=[LPE]; }; + LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.31.0"; sha256="0wgjvy0r0p254kr686nnvjdwbqhbq06q1izy2idh9aaa043swaqn"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; + LedPred = derive2 { name="LedPred"; version="1.15.0"; sha256="1jbwxs9hcwqcm1dpn24jkq0xi8jyja9mq347frpn8vc1m08w4bjx"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.1.0"; sha256="00y0xcw89c1kdmcdj4pw620szrhxy2sykb7iblfbxz04cbj7vygs"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + Linnorm = derive2 { name="Linnorm"; version="2.5.0"; sha256="013i53zmjgrkb4icgzp9mdmn7wqfm8r24izm6vifigczqphm0g0i"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.35.0"; sha256="0ggrhgdlw44k0q5nddn60m91225xx4c58ydjgd98b4rz4a0l9qjy"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + Logolas = derive2 { name="Logolas"; version="1.5.0"; sha256="0h6pq0mp935ygm8pcnk4g9wxg9hcqnbssw6ar1kw59kcama062fs"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; }; + LowMACA = derive2 { name="LowMACA"; version="1.11.2"; sha256="1ir6vfjiwjhi6hj6pzksh2wfrcsmhkd80zwc135md0gmxr5bhhw8"; depends=[BiocParallel Biostrings cgdsr data_table httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.9.0"; sha256="0s0hwgbxdmkpdp6mnvd181idg0n3z87wf4w0arjih1205n1hqsyw"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.3.3"; sha256="1h9f5syg4r435w5p5azgmyfmfaycqx0mmbs8jgz2hp3m04f8a967"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust]; }; + M3D = derive2 { name="M3D"; version="1.15.0"; sha256="1fdfahbdfx3csn27q61djp27a2w6jr9yl9hw6rakjnj7mk5s1xrj"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; }; + M3Drop = derive2 { name="M3Drop"; version="1.7.0"; sha256="0w4vwlbaz68if7vanhr79nqg84cq9r60drrawc9c5c6gfcfzzjmz"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.7.0"; sha256="00x1nbvf375nik8v12hwpbnn84l70j5jycv8kp37fn18909100lh"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.1.2"; sha256="03inn8i0pragrph3nia1zvkjd5kr3iz5ggj2i1fm6ir9259c7n01"; depends=[Category clusterProfiler data_table DOSE ggExtra ggplot2 ggrepel ggsci GOstats gridExtra pathological pathview pheatmap png RColorBrewer reshape sva]; }; + MAIT = derive2 { name="MAIT"; version="1.15.0"; sha256="0z1wl9hxqcfy7nlwqccz244kljdjra58drlhjfvc38kiy4q7nsyg"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.53.2"; sha256="1ss77yxivvgv2nswdp5qbbjc21ghrnwvj3w33xj4zv79bdb92qga"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.7.2"; sha256="07v6gjlh645w60c5fq206lmm2qpld1qqirdszrnrz00zrxzrnpz0"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.15.0"; sha256="19zn2xmarpiszs3jfmmlgc5nflc2gafbby3x68l38sich2jn1kix"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.15.0"; sha256="19lgv7lcy5qc6xbsngqvfxbaqcyk3rz907983ngqa9magr7xy2r1"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.35.0"; sha256="0cmmyj0c13b47apdk04qqqfg35rywh5fa0d2inhi31lfvbfd8bcx"; depends=[preprocessCore tcltk2]; }; + MBttest = derive2 { name="MBttest"; version="1.9.1"; sha256="1m99zma2zg070sr759y8gkmm1qwnswqapbhl175xf8kxma1gh4cb"; depends=[gplots gtools]; }; + MCRestimate = derive2 { name="MCRestimate"; version="2.37.0"; sha256="1b1cp4aan1wnzspihjm2snp16qjd3flr3ixx19mvsqzy5p38pf69"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.5.0"; sha256="1zkxh6gax7rnp6n5dd6kwcljwds33fv5ps4crn41hzndllpbbc93"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.1.2"; sha256="0q3v06za1wdkrzp711gs7awpk4dvrxj0xy6m5lzjyjz5qdd2nym5"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.11.3"; sha256="04s5gqmn2gd399ba7gj9968d5ryisi6hl7n75mrgns5zq7mb3q7s"; depends=[Biobase BiocGenerics DMRcate GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.33.0"; sha256="0c37ns7z4wgir91lhz36035nvp1vc886fardjn2p74bz5w90w16x"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.41.0"; sha256="1l0i3vz1zp9lmvvfn5h6baf9kzvdyb9m1qffwlg3dvzdzdqadx0l"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.15.0"; sha256="0ch31d8g993ikz7dklzfh9mfn1cv8wv7k3nihdspqvbm37m8c0v1"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.15.0"; sha256="08qgxz6aglxgzrbmxmay1xg402vw0a4yp86ifb5p0bwaniiv6k72"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.7.0"; sha256="11vw9yyv6j2pjj4cmlw0f3blxz4iwx3p9r0xpzis5zs12x7pn17f"; depends=[annotate biomaRt]; }; + MIGSA = derive2 { name="MIGSA"; version="1.5.0"; sha256="1n4gh139cp05ahqjd3hyj2pzj9p0pyqhbwhsyg208mlm1arkdyxg"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.19.0"; sha256="1z3hj0ivv4zw4sprzr5bhxp5fpzkg37m1sk1y90cfm42p4vyqagg"; depends=[Biobase coda data_table Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; + MIRA = derive2 { name="MIRA"; version="1.3.0"; sha256="0wsgpmig3vz0iy7395a8091n5w5s5xmi709bd5pppdqw2zwhnmn6"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.61.1"; sha256="1nmcxaa3r34xhzcs063pwggck2yhwvc1ckzyhqabbb41jflnnw3g"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rpart sfsmisc shiny threejs]; }; + MLP = derive2 { name="MLP"; version="1.29.0"; sha256="0fqrpnqb9031f3y1qgmvxr0ynygp1rzjg2dsy4g2z98jzwbncznk"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; + MLSeq = derive2 { name="MLSeq"; version="1.99.8"; sha256="1h72lhvrvkpbl5dil3gk2kw6ax3xpycp87511a5ndzagnl2499js"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.9.0"; sha256="1l3frx6myj4jglypv5il3pgjpm3szq5xfp5p8k8xilahmg98ykh1"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MODA = derive2 { name="MODA"; version="1.7.0"; sha256="0wm5sc2fh5j191128xlxdqmfsh8ix8k33gkcz6yn8rfpj3rdfhzg"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MPFE = derive2 { name="MPFE"; version="1.17.0"; sha256="1jalc9ny5lv3h7awrkg5mmagjh15js5rmpqfl7pn15499186fajp"; depends=[]; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.15.0"; sha256="198lczhpgjlv0mq1k4rch4fm0gjm7g65j108ib69n5zbzkcqgbri"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.15.0"; sha256="19b61p8ihxni4psfrc7akgrq6aq28wzf73zp0bizwqfkv4lphm7l"; depends=[mzID ProtGenerics]; }; + MSnID = derive2 { name="MSnID"; version="1.15.0"; sha256="167hjrp9zsa84swbrkmjaxc0haza02qzzfg64855rrf0m319g0v0"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; + MSnbase = derive2 { name="MSnbase"; version="2.7.1"; sha256="0gc1hysdd3ng6a0n3fqidrwgm2b3x4mlrccrxba5ank312i6f5iq"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="3.13.4"; sha256="0vc36h2s1xmird1ghadw0v9r12gxh73xjmgbclfydg0q4i0x6762"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="1.3.0"; sha256="1sp72cpks1cw3h6j9lzscs9lf9s9gl092h3jnxixkzf44cjlbxah"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.1.0"; sha256="1cr6l6axi7cqqb547dhsha7zdn85grgvvq2436skxws172pl0pv3"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; }; + MVCClass = derive2 { name="MVCClass"; version="1.55.0"; sha256="0xkwwvq66cnmac52ik95siq78ny9nfbgp4xncdamq7gmn7wasacr"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.5.1"; sha256="015zdbmxlpv9y2qsg6ny59ljy8cn2vz4grmwa8dragr7pmivqikf"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.51.0"; sha256="03sqqfi06hcprya25aj3p9sa35x9n2m9ffnplnh6gqmcv22fj75k"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.33.0"; sha256="1ni7dw8lk73n3b19m0rnd8cszb4p6la6msld0z63lgvih4m3z805"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.47.0"; sha256="0mq6xfdj11m49xi6x14lp6kh9idfbrmy9kx7jpjm90hwdjnl48ym"; depends=[waveslim]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.13.0"; sha256="0plcabv6wc7s4q7ippi7i9ckc3lg4pwxdm32gpsmmssff37jx41c"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.5.0"; sha256="10hdj1kb9ywwgzf7nj7hzmh2hr5si6ps0h120nkdjmjscyd2sw26"; depends=[EBImage]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.17.0"; sha256="1m73m7dgcl1n2rgb8c8qar65w18b1qq42n458yw3di88xly6wmb3"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.53.0"; sha256="0j6v368naid00b1igibjp94yxyz0sqhsr8lxgxv0xwy85ivsqlbi"; depends=[]; }; + MergeMaid = derive2 { name="MergeMaid"; version="2.53.0"; sha256="1dn5shrkyhph13x5qyygvp10jd8acs6rka9vr3g9dh0rq4mx4114"; depends=[Biobase MASS survival]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.9.0"; sha256="1qs7jcgg5ah2iw6lcfwnp9lag5cah0d0gg9jk2qhrnqi22cjrymf"; depends=[]; }; + MetCirc = derive2 { name="MetCirc"; version="1.11.0"; sha256="1v37sbd1c3m5mqyqlm7jcv1dascwwb1m9fm1cr2rn8r2whi9yfib"; depends=[amap circlize scales shiny]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.3.2"; sha256="19kvmrzfakyjavd0y6j2ixzmlm070fdz6sygn0vczpdkqmir5vqd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.1.0"; sha256="1jj4jh27ysl3ilhw20pf1srw0n47c0dbc3s760blwbf5qnrlhivv"; depends=[beanplot gplots RColorBrewer SummarizedExperiment]; }; + Metab = derive2 { name="Metab"; version="1.15.0"; sha256="12l43jyrsq1dcbbrkr6k66hrcwkx8ynyniz3cfs17im09nrj20jz"; depends=[pander svDialogs xcms]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.11.0"; sha256="0cpmbq55d7bf9mky0m0ydg1qs60sxq8wl2apkhvnyfhifv3f316q"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools org_Hs_eg_db RCurl]; }; + MethPed = derive2 { name="MethPed"; version="1.9.0"; sha256="0xi7s75ph09xi8f57hnmlfzr4xazj875wqc98dr198r5985sl99v"; depends=[Biobase randomForest]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.13.0"; sha256="02kc184ql68rqll95sza94qnzjgh8wvg76h3z5r3lqmxdd7bblz9"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.15.0"; sha256="15xkcbjj7mcmbm5di1bxslfiipnbdarsfsg16kmd530v9lmll331"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.11.0"; sha256="1lm88i5b03i08s4dydmw7jjxp5qpn5nz72by74nqzc36m6ignk8k"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.21.0"; sha256="0zpd930n3vyv94yic8zjfgl68m3kr4z35ab5lzprjmpyy8hg7szn"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.41.0"; sha256="0hdjkg90kk7igjx26hfm9wfh7lymm0cgxsn263a7sy1cb6ld7nx8"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.35.0"; sha256="19w0kzyg6s950g0p4a4gdkkblsz30zv57rs3dqzqh1rgcrcb4gpf"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.53.0"; sha256="0ii5vlx5gwkz01ivg0qjml8q5zqdvz21rrxgqhx2zdqwi6cbfww0"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.23.0"; sha256="1inywp84lh8qwairxrb8cvql171mg4jrg66aqg0nhihqm0mjwnn5"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; }; + MineICA = derive2 { name="MineICA"; version="1.21.0"; sha256="1n711vz5g1rrz6hnm88w3ycm0yczq4a0h2rg635g7x33sszjr3dk"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + Mirsynergy = derive2 { name="Mirsynergy"; version="1.17.0"; sha256="0n8vspalfwisnfk486i90pxi2hd2xi32b36pfl3ifrpqyr2rylix"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; + MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.31.0"; sha256="10cdaprs899j3fswds8vx4gm2xp5kcx11l53ymxlyjr5592887fm"; depends=[Biobase lattice limma statmod vsn xtable]; }; + MoPS = derive2 { name="MoPS"; version="1.15.0"; sha256="0bmxwf1i2szan2wn4gxmf4qskrsaydkkrbg7agmgzgbzhvb47dgs"; depends=[Biobase]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.7.1"; sha256="040hkp66mr432762wkwyyhxpsqqrhkri06szl7wyfpmf3gmydj9i"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + MotIV = derive2 { name="MotIV"; version="1.37.0"; sha256="0wzf7dzw063i613gx8pa3sf1hvqc52yhb8dqpy87g3smalfj3qr3"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.23.0"; sha256="1s0191bn7418bkl5zha6a99wnznznrndk13z8jhzjcpp4kk6m1f7"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors splitstackshape]; }; + Mulcom = derive2 { name="Mulcom"; version="1.31.0"; sha256="0l8wn2ma3s55w86wv3779y39vsp45rfa5nkjj1cjn26qc2ay0r0f"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.7.14"; sha256="1wwi9dgf41zvkv2zkrx6wvk15zhml618mz3ki7gzshzp3p9wxwr7"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiMed = derive2 { name="MultiMed"; version="2.3.0"; sha256="085vmkq1hd9x1za5c21gvndyl46ymd7w5hwixvhnsclzb4r7gav7"; depends=[]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.7.0"; sha256="1iy96za3b31sm9kkbg6vf17a88pyhdk580yrhl580ggwjjkn3fz6"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.5.0"; sha256="0wjnfi09d686ypifgqrn191hh8xgv7m87fnak84ss5ka9lwhii54"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.29.0"; sha256="06jmifga56d9cnqp4wb9hm6g32fhsk6n0g70qqw1k4l5k7m2v5wv"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; + NGScopy = derive2 { name="NGScopy"; version="1.15.0"; sha256="1b8190zyq3sixmvg9kw7jshxsyb2zicfm0w6qfgah0aq9jgb9gxz"; depends=[changepoint rbamtools Xmisc]; }; + NOISeq = derive2 { name="NOISeq"; version="2.25.0"; sha256="18hz9g1p1kacb1f4b3sxfrp1gl6wk87p20d5580krrqk9a69al2n"; depends=[Biobase Matrix]; }; + NTW = derive2 { name="NTW"; version="1.31.0"; sha256="183y8sqf3h4ik1cm6zhvzmijc8kanmv3lvqh4v4cb7qhvgrgb3ln"; depends=[mvtnorm]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.11.0"; sha256="0sl0chkrx8s4625ch43x9r8n5k7cd0y18cinafrligqfrwnc5yx0"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.13.0"; sha256="1km8i428rn4q5b89d56bcnwkrpvhf67bzmxwzxfdwm1qr956vab2"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.25.1"; sha256="1lqs0rcx52c3hnx89wngmyyhn02a7nf007x95z85rqzrclgy27ki"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.17.0"; sha256="0p6syyn31nfx3qgw8yv6m7jry2prnjnf6pc9qf889407438q11cf"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.21.0"; sha256="15crfdd8a7wlmn3vmwqxzfihaph64lay7k75dx5mjwswp01w5g37"; depends=[graph igraph seriation]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.27.0"; sha256="1481sv255pq76scmbwvw66blknww2w8d9c4md4gmsgkifwnwvqjf"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="1.31.0"; sha256="1sfv98q0z3x5lzmvhbjh1k65flxhsjfx5nqhlhhihcs5rjx8pa3h"; depends=[]; }; + OCplus = derive2 { name="OCplus"; version="1.55.0"; sha256="0nn2adv9v0j0dhz93kd2d3bh1fx31vg3qk9sygrf1xbwqppmcyp9"; depends=[akima multtest]; }; + OGSA = derive2 { name="OGSA"; version="1.11.0"; sha256="063y4bzxiwjb0nvh3lkkgd39p59sy9drzcckpkxm5yxm3scrdy2f"; depends=[Biobase gplots limma]; }; + OLIN = derive2 { name="OLIN"; version="1.59.0"; sha256="0q0cr7yfprvzl01dgb4mwpbwnj1yfpn4myf8jksckiy0s2cwinra"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.55.0"; sha256="1wjsb9h443d82x6vq70plhv7cgc3n7imvjlian1a0hd9dbcx9ss3"; depends=[marray OLIN tkWidgets widgetTools]; }; + OPWeight = derive2 { name="OPWeight"; version="1.3.0"; sha256="1jjpz8inwfwpky316l61lka8g0dp69qr8kbgi6g54f0y0kjcq5fa"; depends=[MASS qvalue tibble]; }; + ORFik = derive2 { name="ORFik"; version="1.1.0"; sha256="03fv9dr9jpzavrnbjd1pp6jlbi5i3sbg6zbi3p7z95rm8j1cds6x"; depends=[Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; }; + OSAT = derive2 { name="OSAT"; version="1.29.0"; sha256="174jna1bl6vkbr3zypyfnhakfm7bm6llfcgghr4m9bvc8a6hxq6b"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.31.0"; sha256="0p86dn54pipqy3v74iwgvs2xqxypq6iq58y9m0pqbncryrszcs0p"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OmaDB = derive2 { name="OmaDB"; version="1.1.1"; sha256="1y2xflz6cbdhxsyd0nx131amxmq4jjfcgma34vrl6jzl9y9l96ga"; depends=[ape Biostrings GenomicRanges httr IRanges plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.19.0"; sha256="03laa1vjjxgrpcz2sxdq9dq0fa2s04jvf56q03h5gx8hkfn4rv7v"; depends=[GenomicRanges]; }; + OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.13.0"; sha256="1fqmyfpjmpx3ihbvf5w15v48w2zbkx8iyyajc9gpsb033abzl3fm"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; + Onassis = derive2 { name="Onassis"; version="1.3.0"; sha256="1smj5ii8mblmkg1p8ssi5xq5aqa13nl7fc0nlpbflv3cpssimzjs"; depends=[AnnotationDbi data_table GEOmetadb OnassisJavaLibs RCurl rJava RSQLite]; }; + OncoScore = derive2 { name="OncoScore"; version="1.9.0"; sha256="0ckcnhr5f6lcarg6zjyszmf5yl6gw1g09j6jnqq87pk9g7nsi3n6"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="2.11.0"; sha256="02kbkpjkpi3srxgz8jcyk1dhsc2q19ghbd3p160v2sf966g1286d"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph nem RColorBrewer Rcpp Rgraphviz smatr]; }; + OrderedList = derive2 { name="OrderedList"; version="1.53.0"; sha256="1pdv3pih594x3bkrzmm7ab418mxjsa17qbv0dpmw4w1yyvrlyz5m"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.9.0"; sha256="196ispr6m2r1fc4l4jm985njh8xz7qxcsr8w0kvffv63zx0zy807"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.23.0"; sha256="0mjav9c9w5mwmkdisci9c7i993xyvqbmsa8nw9kyhqirsxf0p7cc"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.11.0"; sha256="1x8z5i3v42787iv9hddp65cggnlvr7xa9kippi0sn0wr7gd79zcw"; depends=[BiocParallel cluster EBSeq testthat]; }; + OutlierD = derive2 { name="OutlierD"; version="1.45.0"; sha256="085nk41icxzx8halczi4kjd262y8dfxq6lrhwiy8qjb216hbrln6"; depends=[Biobase quantreg]; }; + PAA = derive2 { name="PAA"; version="1.15.0"; sha256="06slcqrpcvz713ga5vl2w0dyswqb78nnqvvf0dxi5cdw8g3h58gs"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.23.0"; sha256="10libml1j14yy70s22yf8i4mh8awmnx5a94b3krmh6py2xlw41nj"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; + PANR = derive2 { name="PANR"; version="1.27.0"; sha256="0zr55whhmqyic41chlzxhrn081ray8gl90llb6rwigvmzhfjabyr"; depends=[igraph MASS pvclust RedeR]; }; + PAPi = derive2 { name="PAPi"; version="1.21.0"; sha256="1qnbqa72w1734j6rbdbays1f4ysl2b1r65p2hi580zwwi6isaa3i"; depends=[KEGGREST svDialogs]; }; + PCAN = derive2 { name="PCAN"; version="1.9.0"; sha256="14ph4mk4svinwpy0rw2b3n96dswahw6273lggw2blp9s24a56a1h"; depends=[BiocParallel]; }; + PCpheno = derive2 { name="PCpheno"; version="1.43.0"; sha256="004qx7rclh2q9bbrqf4d54jlzpha8vg0lbaf67gf42ivav0fl908"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; + PECA = derive2 { name="PECA"; version="1.17.0"; sha256="0p4vg0kcrypxm4g8al50rcvrk10lqs23mc00hrd1s8ydycvgd26a"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PGA = derive2 { name="PGA"; version="1.11.2"; sha256="08ksqsrpx8mj3mbdbvnbx9bnwxqskkyd340a13r76f5d1p44086m"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; + PGSEA = derive2 { name="PGSEA"; version="1.55.0"; sha256="07ynkcxppvm8s525y10ly6jcc0ga93a8sqihdxhs1yg092pcbx64"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; + PICS = derive2 { name="PICS"; version="2.25.0"; sha256="1qfv4ddkym5s7171i0c4s5v3x8liaxngpv40y362cr895wa63mwm"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + PING = derive2 { name="PING"; version="2.25.0"; sha256="1lgvn09a1frb6cqrnrvmyzlwm7rgis61wd1gqv5y6pf0w6m6ya9k"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.41.0"; sha256="11a1wsgzssn5nqbmxxrfqk7js6h3y0zcxgfyqr5hvfz6licl2q3v"; depends=[Biobase LPE MASS]; }; + POST = derive2 { name="POST"; version="1.5.0"; sha256="099q5w5sgpamgncga096szl40i3lzjnphki2kfby0svkkvjiyrhl"; depends=[Biobase CompQuadForm GSEABase Matrix survival]; }; + PPInfer = derive2 { name="PPInfer"; version="1.7.0"; sha256="0pvhfc3qyxx6vxww6fx7jx8hb72sl4jna1c3bnyw6z7lvp7a8cxw"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.27.0"; sha256="15ndnwf3f1cj2h0vrh71gs7xdvy97nncbxrlwk6yisvgndjbdmsb"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.33.0"; sha256="1gkbpj9cd5fbrrp2zmffnckynbn81kqyg5wvy2g88spa1zxsx6vp"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.13.0"; sha256="1w77rishajj0azrcf0cfsg9is98w1f1w3hfh72rgi7kc93d0k4v0"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.3.0"; sha256="15md6zvsa9ismdwbhlzwxkyj38n4bqv4kpbvxbzg7kb50hc109w6"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.57.0"; sha256="1sb25yfpvq4z6famifk951gwx75dd51srf1khm96psz9k0klxbqg"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.15.0"; sha256="1rcz03n4asjajlncppvfhmlnar6f9qzb6m9bg99nmp0gdkjcwa2j"; depends=[Biobase MASS]; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.19.0"; sha256="06x6r2js8mxl10yrgmmvzb0na5ydya3ldzxaagh8z21smi154215"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.17.0"; sha256="1mknim17d0wl7vhn6cffjasisd9nmgs4b3fjz42yjj9y5xqjxwv9"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.9.0"; sha256="0x1rzblyy45xdr3hnjbacip7v1pbr54wfc2abldgij9mgc0hmhl9"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.11.0"; sha256="1f6qc6cvsrnhh26lkprjan9fxc1kw4hbb1wbr83rswg0lj8nyg6r"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.21.0"; sha256="1gnzghvj0gf4mcbh099v6c13gqjkalgb3g9fpn2i86fq8h61zplh"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.7.2"; sha256="0j5by6yqgiyj17wn036dkb9q3d47ynb4m4w9zkf01d38lqzfp2hr"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PathwaySplice = derive2 { name="PathwaySplice"; version="1.5.0"; sha256="15yc7d84cghmqai4m86bzi3cwidngmn6b680a1ngm6lmfj03bykj"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="1.11.0"; sha256="0s2gwvp9pdc1qf35apcgscz2xrx5sy1x9kcixy9wjwm4qnhr8cag"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; }; + PhenStat = derive2 { name="PhenStat"; version="2.17.0"; sha256="1fvkaqg1ignyknjgrnj359a5276rrscrkdk9029851rjpyzwypd5"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + Pi = derive2 { name="Pi"; version="1.9.0"; sha256="1bdr53dxz2sfmm7n4214m5mqp47l8ipsm562mhs1pybqfawfwfff"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex XGR]; }; + Pigengene = derive2 { name="Pigengene"; version="1.7.4"; sha256="072bzpimq9135r4s7sfxgw8sb6h0fgygay9fvlbldfcql8amx7kp"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; + Polyfit = derive2 { name="Polyfit"; version="1.15.0"; sha256="0k3apzd7szmglba2s51grmp4lbvv2wmv6kvv43mvbvrvc59cyxq5"; depends=[DESeq]; }; + PowerExplorer = derive2 { name="PowerExplorer"; version="1.1.1"; sha256="06igcls1khn3dvajp7289v4ax6yr5cgg0da0d81dkr38cb6lwnpx"; depends=[Biobase BiocParallel data_table DESeq2 ggplot2 gridExtra MASS ROTS S4Vectors SummarizedExperiment vsn]; }; + Prize = derive2 { name="Prize"; version="1.11.0"; sha256="0fk26mk97l3jdj9n20ha7m8gcfxc20w4c9c5xshnphfij56brrr5"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; + ProCoNA = derive2 { name="ProCoNA"; version="1.19.0"; sha256="1648ly7mpqfhj1phnvwrkzsj31wdk5ddg7cc073kbwwgmz859r0d"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; + Prostar = derive2 { name="Prostar"; version="1.13.0"; sha256="01k76vh9z15ya8cjymwmpcl0z79q3fqpz2m5yvvsy21ijw2vd004"; depends=[DAPAR DAPARdata data_table DT highcharter htmlwidgets R_utils rhandsontable shiny shinyAce shinyBS shinyjs webshot]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.13.0"; sha256="0mcdiy93c01ki2zfv90a5q00hss8i4mds4gw6n6gp32f40ap7h2j"; depends=[]; }; + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.11.0"; sha256="01279ybid6k8l8w564rpx7jd1487dafxkmgfzvg0964z930i7qsm"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; + PureCN = derive2 { name="PureCN"; version="1.11.11"; sha256="1n2ikzcyxw8rfbid2bgg6fnn3nlfwgmjw73f9y06hyci0m2qpc8n"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.15.0"; sha256="08kkrhxmy60lkvmjwpkv3nv7w8mybv5465923a9hghzs291qjvn4"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.17.0"; sha256="113s3ir4dxhxxpfy700hp2lgvx6qgzy1nbqin0g3fz7z0y50m2ns"; depends=[Biobase BiocParallel CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QUALIFIER = derive2 { name="QUALIFIER"; version="1.25.1"; sha256="1acaga0zc3vnjmr15xmyd05xp2cdwh96armg47qbpb4kygfh433g"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; + QUBIC = derive2 { name="QUBIC"; version="1.9.0"; sha256="1kayxj3msc171x6glgvqpqygrigf8x0knknk7ci7fmbg6haf44jf"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.13.0"; sha256="0mxq3nn5lqfqk8lpg1pys724pvviqz1fkhbnp5zlszvyhikmic9q"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.21.0"; sha256="1q3h4dg95wqmfkbrp5rvyp7qazafcgwc4chhw7rlwdbvic080g63"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.15.0"; sha256="0b0qxsqf3g42k68d22w22n8y5yjvhx4jfkwpaxg38z5i8404n03k"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.13.0"; sha256="0viqypiwmrhi08islj8lg2byhvhfblwjj340ms2a7wf8zbyl439l"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.31.0"; sha256="16cri94hg585804xaq5gfbs9nn62nhmcayapvwpb2y7vs855g4qx"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.9.0"; sha256="08jrmdcdwk9dzk38sjc6rxn4nf3s5lg6x9w540drhiynd3jw9nxw"; depends=[Biostrings]; }; + RBGL = derive2 { name="RBGL"; version="1.57.0"; sha256="0bm2wfsi3himissj2x1v16rgrz3j2wz9s1kisaxxpgv27a4bvp0i"; depends=[graph]; }; + RBM = derive2 { name="RBM"; version="1.13.0"; sha256="0ssl53wbzakkggx2jlzy378jnw13w116dxs3wnzmdaywa5nqbamr"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.41.0"; sha256="1bi7dx51nhq7y2s0395hncbfbwfhdixwwn5n238f6fq6sxg95v1h"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.7.0"; sha256="14s4f6lfy31vv791h8yasc4b3883r0ksjab9wrsw8w8381ac2323"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DBI DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo knitr motifRG org_Hs_eg_db pbapply pheatmap plotly plotrix proxy rmarkdown RSQLite rtracklayer S4Vectors topGO]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.27.0"; sha256="00r0p6hzzjsgpwc0ja6ws2sn7fp5qzlcajvwq3l5zd99zcn3lds8"; depends=[]; }; + RCy3 = derive2 { name="RCy3"; version="2.1.13"; sha256="1kp2hgh2kid9xy8w97wkwc3759sxz7lp6inamsflff5a12ffd41c"; depends=[BiocGenerics graph httr igraph RJSONIO XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.3.6"; sha256="1gbqpf9ljvlhl8zmd39d7fifn67sv6gmfvryfk9yf0y53x9l95sc"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.19.0"; sha256="0in7bnx1v9z9z55b88hmix8fgrjysbzjxp0c53psq3k7fm46yxg7"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.31.0"; sha256="0zm1319g4b0jfqi7ix7insqadilccmlcc1bnwf4hwgw1d2bsby1p"; depends=[MASS rgl]; }; + REDseq = derive2 { name="REDseq"; version="1.27.0"; sha256="0s1v5qlbzz54pck44vy0bzhkm0ga7wa01nrr4x1fbswxbkz80djy"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.5.0"; sha256="0gr7x6l9z871p41w32q8dqz2jaglvz51d7zrrwxy55iidbnqw5jv"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; }; + RGMQL = derive2 { name="RGMQL"; version="1.1.0"; sha256="1z7dj3lmw40b08x33bl9fb4asr22syn0cinl12ya60nawh5rlxsi"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.15.0"; sha256="1c0i33lz0cl983dk520g2caf0844jknd39h71fy6kynknqxmnqqs"; depends=[BiocGenerics]; }; + RGalaxy = derive2 { name="RGalaxy"; version="1.25.0"; sha256="04xs1w3yndlrdbac2ybzhdk8fdbg95a3qmjjqyykhfl5mck97d97"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.9.0"; sha256="0y7fnysz9rljyrk4gs1r29zgxzzcpwk3jayv6km20l6abxzbfccr"; depends=[digest graph rjson whisker]; }; + RIPSeeker = derive2 { name="RIPSeeker"; version="1.21.0"; sha256="02m401h56lb88qcfbidfxvh5nxls465y68jgjcfv7sd4x83ykd7z"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + RITAN = derive2 { name="RITAN"; version="1.5.2"; sha256="0nfnrh4w3y33rygdl07ydvxzl05nnysl3zlsg9nf459w98y4s7xg"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png ProNet RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.5.0"; sha256="1fdav14pba08a1hyqh82yad1ynvbzbc9i5gn5gxiypa833s5v31h"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.9.0"; sha256="0amhihh6g8j817xr05bqcp9sx564gp0jlg34iinmjqzizksflv1g"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.5.0"; sha256="008nmql2f1qw246bj50w38kabcfw2bvgqb086ch9h9cv4b976dwi"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.43.0"; sha256="1hfr0w56jai1v3x0b6w4z5y00yf8j2aa2yhcd994lj48klwgjacp"; depends=[MASS]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.21.0"; sha256="0gd3mbish7k4zwfv4kadcnifwm485p7zizvdj8pk1ns1fl5cwpbz"; depends=[]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.1.1"; sha256="1xnj3q52biy8rzpyvd7b77sszsvs01sxkkkkkz0waqi61q58rhvv"; depends=[ggplot2 gplots nloptr TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.29.0"; sha256="03xizq9h93ii1jwjbk6kcmh71fc882qk9fnv3hbl15a9d8yvzpnv"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAither = derive2 { name="RNAither"; version="2.29.0"; sha256="0w90awkmdi2h6q2hpvl6i5qbkdggbpvac1cbxx2995hmx8lc6pwa"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; + RNAprobR = derive2 { name="RNAprobR"; version="1.13.0"; sha256="0hjhk0ap6n17ccjkjfxq8c8cfg166gcwbapmwixac4dqwqg5k997"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr Rsamtools rtracklayer S4Vectors]; }; + ROC = derive2 { name="ROC"; version="1.57.0"; sha256="1glip25d37gz13b2c4zpk1vm34kvfxvgbsz302ww0g8wqq3cc0i5"; depends=[]; }; + ROTS = derive2 { name="ROTS"; version="1.9.1"; sha256="061z3cnwaz5fgbpikg6vqazp1bqsxp7ln8krn3i1fz20k4ny800z"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.9.0"; sha256="1ivsr52qf9sz08zpp1vbvwyqpsfd55m4jj8g62mb5khkmrf8mnwl"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.37.0"; sha256="0cm2sfv6pkrxjq8xnby2hsnda687bdlc63b3i96fmhzjldfwnixf"; depends=[affy BiocGenerics phyloseq]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.3.0"; sha256="1ji9m1x9l84iwdw1bd2bhbvdfwn3jnw80inc6xnc6vp4k64zll4m"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.21.0"; sha256="00wy53vmfdzfv56ib277cl7rnv2l6klyixyjq93whmzr39d8mbwi"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.21.0"; sha256="0l7wq0cvws0n78xp14rwagrjhm3pxzf2jg3k1w5pv6w778mhm9dw"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.1.0"; sha256="186qcffr5f1g5x5didd8gkhfdl9wxdivqjwxbcn001i3k71h11mm"; depends=[]; }; + RTCA = derive2 { name="RTCA"; version="1.33.0"; sha256="0wyvn004xjxgr80ar5a0bcc6jpz9ksi03is8yc8ijsdlssk9cs71"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.11.0"; sha256="1r5qxbbw420cq2a648ispxwlswv5xpi9r4r89r7d7cgaw1k1n0h5"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.11.1"; sha256="0ajrz01aqqs30m5dq6x0l2gn49vhbi4k9ppyzgdy0ljpvx95c8hb"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges httr IRanges limma plyr RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; + RTN = derive2 { name="RTN"; version="2.5.1"; sha256="1gwvqqjky6cgq4sdj8myjqrywdx7a44wnvb20l47qlqamlr41905"; depends=[car data_table igraph IRanges limma minet RedeR S4Vectors snow]; }; + RTNduals = derive2 { name="RTNduals"; version="1.5.1"; sha256="17vp27lxjh3v0y2s1d96xk2y3wxwj2lh40c5z7lqh6qx89lyhirz"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.5.0"; sha256="0fyks8lvxqdli3wm0z0py6vn5y3mfpvi95mqb7hycafc2812am68"; depends=[png RColorBrewer RTN RTNduals survival]; }; + RTopper = derive2 { name="RTopper"; version="1.27.0"; sha256="1d2bnvjlwgrahxjd1x6gzdhz70wyd990iq9204kc072qyi40l2yz"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.15.0"; sha256="1dnjshlpalfnrgk9dmig5k1bnshpk4ifp3bvh1cp1z55yihmw111"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.13.0"; sha256="0cfq69vvajn2s8gyrr4g9vzf8l8wp7p6hg6jlfffv2kfn3yhd05g"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.15.0"; sha256="02v5kj8hbzgcckqq671zypfkf460j3rxiqxh4w5izp9bxqdv9g3g"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.3.0"; sha256="0y98yaj5lvlc4104nqjhk7g00f1zqaqsig3mdf7hvwqhlwdsyh0l"; depends=[gRain kinship2 snpStats]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.5.2"; sha256="157sfaz4s6wpvccn4s7w0j0iv69zqzf8vxpamp4kdzdhg9ky7byw"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.1.0"; sha256="1kzxl773z4619lvznxv67yb7k2lfjn3bfgfssgql0adrjfm8qi1a"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.7.0"; sha256="1zqawks6i567dk4ylnyh0jddnp62nqygshv4ihy39xhjab4j04wx"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.9.0"; sha256="1466zh50n0f1apkbd38lp84r8byras0pna5bm49bc7i7s9agkp14"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + Rariant = derive2 { name="Rariant"; version="1.17.0"; sha256="0nm0k2d1bhqsk9gir38gd0py6xn5wk0b985kpix8ghi64mypmqmr"; depends=[BiocGenerics dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.49.0"; sha256="1ar8jl97fillw0g7kf09mxkr9215dw3jmw2b6qaq9pch7qg8qnr7"; depends=[Biobase graph rpart]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.21.0"; sha256="05ql92h3s7ppsf5fdrsqbhsn9snwhf168yr78n7qhafw9p6ry77j"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="1.3.0"; sha256="02cf3hn9nb10583fwxqzb8iygsm5xzmxhk4y0iadyvxi6nsz6lbk"; depends=[]; }; + Rcade = derive2 { name="Rcade"; version="1.23.0"; sha256="0d6cyn6b06g0qkps2d7b65p7pa7bz6iv71lv4hbzmdc581azg4fq"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; + Rchemcpp = derive2 { name="Rchemcpp"; version="2.19.0"; sha256="17kz0ld7hnrvdv69hz3kj3mhv2f4qms9i65lrwam63g0aydfzyrx"; depends=[ChemmineR Rcpp]; }; + RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.21.0"; sha256="0fzmw1kxnaqmk5h61r2dkwq0xp8ir7gg7kq2wkhyvpd68hr3ir3d"; depends=[flowType graph Rgraphviz sfsmisc]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.1.2"; sha256="1a909bnc96bhn1jd8yk1d68f9x49lbd6wgbmwqxq1k1iqh8qj2hs"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; }; + Rcpi = derive2 { name="Rcpi"; version="1.17.0"; sha256="0a6cs6bvnzx9cp5y4m3h9in0bhq78iy50p48p59k6qqzkvldgcqy"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; + Rdisop = derive2 { name="Rdisop"; version="1.41.0"; sha256="038bgrf5bcdwy8bji5wprq55ypajwp68lqv1i24bk6hikfm2g7p9"; depends=[Rcpp RcppClassic]; }; + ReQON = derive2 { name="ReQON"; version="1.27.0"; sha256="1dvsnbsl5ljwfirn61rbcxvrdy74qv96xbs4d8x1wmkfs2bsm2gy"; depends=[rJava Rsamtools seqbias]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.25.0"; sha256="0hrprjkzg6mdsyqyxgzpscfvgm0335j2avv96a9n70w7rj1zx3ym"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.27.0"; sha256="0qbfx6kj6bk60wilbnp49inairhhsi1638i5hhfd1w8365mmzalq"; depends=[affy Biobase]; }; + RedeR = derive2 { name="RedeR"; version="1.29.0"; sha256="00j3yr07qg363ghbgv76ydyar0jp48zdfw5pdpxnv13mzm48wa4r"; depends=[igraph]; }; + RefNet = derive2 { name="RefNet"; version="1.17.0"; sha256="0lcbg131gxkvsvmbwj4gpqdpfqjik91jmyd2g745yb7rayly252g"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; + RefPlus = derive2 { name="RefPlus"; version="1.51.0"; sha256="0wq0l2883ns2sl8ia5qdx6wn9227lxaz7m0g3lqmr36xkflc1ka1"; depends=[affy affyPLM Biobase preprocessCore]; }; + Repitools = derive2 { name="Repitools"; version="1.27.0"; sha256="1anh3fn4wyn69838y7jr5h6bhi8m7d7r1n68rbqvsvbr4bik54vr"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.21.1"; sha256="0rdndxizkbx8bdjcx82x59y326ypsxrlmzyrgkgkmm3hgq041n97"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + Rgin = derive2 { name="Rgin"; version="1.1.0"; sha256="1yqif2dpw0c3p4kg8pni80ggh3f6430nd7k3k0fxirz74ljv642h"; depends=[RcppEigen]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.25.0"; sha256="06kvi85d2wgm2v9pvxn9swrvi4cavww5idcc7gx4d80w4kwzhx5f"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.3.1"; sha256="1g25896i244fv2bpzd68sd542s2842fs39bssxdjd8fcshxkzy2v"; depends=[]; }; + Rhtslib = derive2 { name="Rhtslib"; version="1.13.4"; sha256="0g60pz7ssy872ppws7qvsv7miph3yhx48p6sqmxi3qbz0qs6dq15"; depends=[zlibbioc]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.11.0"; sha256="0l76dfz2r2grx31v8ic80k3mry78m20znssrh5i7v6xfh33ghg6c"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.45.0"; sha256="0pwyfjv8f91g7i1h9qpzwgbkgyh04dyvmrm9v4rdabmfbhr38c6g"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.23.0"; sha256="1kch6h68a6sxdrndqzxmqhyj5mv08iipdmv09z3hax7aw45lk08h"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.37.0"; sha256="1qzxifxdkc86p4q8l7qz8bmxlh5an7zkmgbzb72chwm6bby774m8"; depends=[Biobase e1071 kernlab pamr]; }; + RmiR = derive2 { name="RmiR"; version="1.37.0"; sha256="0zz0jgqfqph0rhkbx0bgm8kcwm81hsk1cml8a917gfymfpzj93s8"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; + Rmmquant = derive2 { name="Rmmquant"; version="0.99.11"; sha256="0lj7dnjf5msrn7fbr68krv2rgav8qrpahgj37qa64k5cn0xyiblw"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="1.13.1"; sha256="146aziw6d7jalkjj81kgdkbnmzpvia8khgqkbpfngjykyykdgqy9"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.13.0"; sha256="0d27jiw016fkmzpd4lsjnrkd122amqi37cr5rpnwviyw47rw5dxj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; + Rnits = derive2 { name="Rnits"; version="1.15.0"; sha256="0vg3rx87fw9y792b9icf1qliwsbi7h74csk7n9ya8jwjsyb0fcv2"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + Roleswitch = derive2 { name="Roleswitch"; version="1.19.0"; sha256="12pqrclq4vfsv0y9ykisri5l2zy3pz3sz22xqlqfkmlldqvngy4v"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.23.0"; sha256="061r9c1lb3qrm4lwpk87ynsi6nqjwqv2cxk9z6l01b14cb2mn6r3"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; + Rqc = derive2 { name="Rqc"; version="1.15.0"; sha256="07zq9p2jkkzfjkccwryfh02xrz6bq20lw3z9v1pikk0dap6g1447"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="1.33.0"; sha256="0qp084lwadvwngn98lmlj758yra7il5sykdnxj82a4llr38fwg20"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="1.31.5"; sha256="14azrcgip829pm1aa6yq2s50zghf83l7mn7pizc98qjrlkwbia89"; depends=[]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.43.0"; sha256="0wkszdsbpkai8snqvgr46mc0kqlgha76hclr4kbgddlbg9cmbymh"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.19.17"; sha256="1cqv7lcgrqbvffmi8xw0pwwl2k3s6kyyfx4dhj05w42r5ax9wk0k"; depends=[BiocGenerics]; }; + SAGx = derive2 { name="SAGx"; version="1.55.0"; sha256="1xriaf6qhmisx7415jgrpk6p0jhhv0mn3ab1zj4g6dvm495s0579"; depends=[Biobase multtest]; }; + SANTA = derive2 { name="SANTA"; version="2.19.0"; sha256="0qfzmsqssb62bab9csak82s0dhrrpz93q0825sdjk7sy2qnp3c6l"; depends=[igraph Matrix snow]; }; + SBMLR = derive2 { name="SBMLR"; version="1.77.0"; sha256="0xhs5adrirlplm8m3ldsw0m085wqi7mgjn3c7ldkhmlr9w9vc7wg"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.9.1"; sha256="1nj5sjxgv0ic0s74w9vy3dwnrwywwj2kaydnn5s1p1hnrc6xsm11"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.23.0"; sha256="1l7h4r4msq8gdiklmnb8cnh29babknzsbncxg3qkrf28q6gihz29"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCnorm = derive2 { name="SCnorm"; version="1.3.0"; sha256="0zij0ny8xnmxcci08br3vb10dfmsxp11mgfr6f5ga8s868n09260"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.1.0"; sha256="0z6ajklzq6srlx2r4ymgpsgfzzg5qzypcza7kh0zfahg2pb262w4"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.13.0"; sha256="0n2xpdyr6sy8mnbq9vqccaphfa5pjbldcnmpm4zb9w2zdg27g24k"; depends=[Biostrings rJava]; }; + SEPA = derive2 { name="SEPA"; version="1.11.0"; sha256="19904q9pxbxwaj8vfqk1nvwb5sn69g15zfk9xyb7wwnwxrrkph0r"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.1.0"; sha256="0wxk45lp7gdnshr4w4205khkq6dn09p7vr77s9hdz8968wj0rzg3"; depends=[corpcor limma]; }; + SGSeq = derive2 { name="SGSeq"; version="1.15.0"; sha256="09ksqyszgh84lwv0vzy8kp4vdhczdqpk1mr7h18ja5rpilnk60r0"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="1.1.0"; sha256="0aaw372yl2b74ni3hr788bqglma679vqfzhfad2903ln0lx54rl3"; depends=[beanplot glmnet gridBase gridExtra LiblineaR matrixStats mlr ParamHelpers phyloseq pROC PRROC RColorBrewer]; }; + SICtools = derive2 { name="SICtools"; version="1.11.0"; sha256="1jgq6acqqfx6fcwkyqn49p94m399dblc86s3hf7xgdml61jjxa81"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.51.0"; sha256="0z23b4pgiyah5qcixhww7csmkq01gw0bd9hmzrwrn046yy3mmnql"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.13.0"; sha256="0kac998ddp94qls9jd68bd32cvnkxzdk63ysrcliiwmxcpplymrq"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMLR = derive2 { name="SIMLR"; version="1.7.0"; sha256="0f8ds6qjkj2z79pl18pwgwsn5fp0k05s50kakfiy9cbmbhnqy9ik"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SISPA = derive2 { name="SISPA"; version="1.11.0"; sha256="1cw4xzcqjp8pdaglar9dfgr25zqyb6h31k3hn66hyxg9cyagj4k4"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLGI = derive2 { name="SLGI"; version="1.41.0"; sha256="0ihb43dmab2188641l5zpn98djj68mm5xq2v79wqrh136n9cam9j"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.47.0"; sha256="0m2qhkc6l158phg5hwfcs5wlq2n2nrhsjprrmzjv3q9rsdhwid8c"; depends=[]; }; + SMAP = derive2 { name="SMAP"; version="1.45.0"; sha256="1i94sywcxp3pg30b93v5p9n70va1mixk67jxxfyhc6dlbfpx7d3y"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.9.0"; sha256="1hvmbsz7p4ibjfh2a45aqpvv1kridkfg3zk3kzgbmws5l1vf154z"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.21.0"; sha256="0lsb2rqb1a3dgfgv5bijgb87y3zdl3mp1p38nzzi05n180yrgpzr"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.15.0"; sha256="02xaxm3qrlgalndk4fmmvdy0rxpv565ysh2vc36gxcdvgz39pf1s"; depends=[gdsfmt]; }; + SNPchip = derive2 { name="SNPchip"; version="2.27.0"; sha256="15cf2nrwixiqiyav5634qlv7md5dmv17h3z97j5771dv75fkl2gr"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.7.0"; sha256="0van1q586n5dd5snvhc3j7hkdhdwrmbky9mj1nfdfzgcdl7bnmk3"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.11.0"; sha256="03dami2l6y21fh7sazh3bzjhj1n9vqc0fva4ig1kkdansd1bvp0f"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SPEM = derive2 { name="SPEM"; version="1.21.0"; sha256="19l21yaqcazymnapqalrkb6az10jkmzy8zvp5wh28rb8bl2p88f3"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.33.0"; sha256="06si8xr8hc4sr87gafaphv9rfiq9w82gwd4xzwn0js00fgalffvd"; depends=[KEGGgraph]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.7.2"; sha256="070ciavxg9y5mahaaaq7sbsz1zkv8llz69x6qvh332v0hchn29yg"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPONGE = derive2 { name="SPONGE"; version="1.3.0"; sha256="0xnrzzlm12rrr54ymfa10pcmzgq7njqhgynv9ki9msxrvn1rhcd4"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; + SQUADD = derive2 { name="SQUADD"; version="1.31.0"; sha256="0dh04i31lzdpkmqhawm1krn132hqj6qz5i6cj2sxxvk4chqq1xmf"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.43.2"; sha256="01nr09lkm4lwc6p0mfl1nn8g4fkzsw8c157snkcclqzn829121bp"; depends=[GEOquery graph RCurl RSQLite]; }; + SRGnet = derive2 { name="SRGnet"; version="1.7.0"; sha256="1b6y5wq18vb41wvjdgbwr5mhwbyi0brzj941950w9if4hm1xrxs6"; depends=[DMwR EBcoexpress gbm Hmisc igraph limma MASS matrixStats pvclust]; }; + SSPA = derive2 { name="SSPA"; version="2.21.0"; sha256="1bsn84xsapnfdfrv6nbp4a7604y2jfkf7zj1xzhv582klawwxzyg"; depends=[lattice limma qvalue]; }; + STAN = derive2 { name="STAN"; version="2.9.0"; sha256="0i8y0a2i60irdg3061l4fmwdmnfrf0fc5byhx1bwbr8w5g4ahpnh"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.17.1"; sha256="1k55kb5x108iq3f2hbbair96x9kn8cci0753jkmd485j3mizfqq4"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="1.21.0"; sha256="079y5h2jfx40vr5yvvpafzzld1z7jc9z98gm31qy7gvm2lyzvgl5"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.5.0"; sha256="0b20pdxc3wsndqhhrxjayi3ldsjnim3cgswa73kjdpdrm3amsvy4"; depends=[Biobase BiocParallel cluster matrixStats]; }; + SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.7.0"; sha256="0g27ik0m7z6wya7z2xgaip0c8dingv1c2jq9qbwpwipvk2yl8f50"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; + SVM2CRM = derive2 { name="SVM2CRM"; version="1.13.0"; sha256="0bnd0bpxwd2c33xdp9bfn8lsvf9dm8an4n43py6akshf6q2l9x3y"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.11.4"; sha256="144p070bcq5j45byw9z666qkzjk8c4brscl4pnsgkghzgiv7fg34"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.35.2"; sha256="0dzapl17bgykgsd9qapc1v0ihzn229n25zvagjp1kdx3r4jqmkbb"; depends=[]; }; + ScISI = derive2 { name="ScISI"; version="1.53.0"; sha256="02m4ma2izak4vg4240hnny0b84x440myayjwqcysg8r5gr6pzd83"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; + Scale4C = derive2 { name="Scale4C"; version="1.3.0"; sha256="1a97dchcinhp24k0r5f7agca33zk3qyh1scz8250aiilhfa4w37y"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + Sconify = derive2 { name="Sconify"; version="1.1.0"; sha256="0is0ix7591gjzpbnv388gnr2jnxbpbjvywv3ln61ign9p5h9gjva"; depends=[dplyr flowCore ggplot2 magrittr readr Rtsne tibble]; }; + SemDist = derive2 { name="SemDist"; version="1.15.0"; sha256="1rfmlihgk2wa1z3a2yqp43nddxw4nmjaybv9jvp84b0yi3drvn8z"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.21.2"; sha256="0kkci67zrxlyhkbap9khn8655wl63h33004gkxzz1b3drvn0a95b"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.21.0"; sha256="10900fdl0g6izlpxwc3x2yix3cxpqfx6xxvbdq66mx2zqaksrq88"; depends=[Biobase biomaRt DESeq doParallel]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.3.0"; sha256="19jv3yyga2fxpndi0rr36vrjz694l97aabr3llkcw7a6mgk78g12"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.19.2"; sha256="18l60hwj04hr8yln8rm1g0s71axxhnpkzn1khfr0v872csi57m8p"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray tidyr]; }; + ShortRead = derive2 { name="ShortRead"; version="1.39.0"; sha256="1cwpd5xf40gwpcnwmvxysxsl21cgfx3rdgigrawlzlzfd7j9kdig"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.13.0"; sha256="1cbdry06knmycqyc7p0z598rxlyyrw6yc8an8qm74b9p8vbnwp1a"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.19.0"; sha256="07j9nzw5c4g99yf458n8jwkndr79mam2n4a6kcz9fpcsyjq4plp4"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.19.0"; sha256="0916ml80crldixb8jn5sbzp156ba0r9lc7wc2ri8wmrslv3w97lv"; depends=[Biobase limma mclust Ringo]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.3.6"; sha256="0rlww0zvrkfjpx68qafvakbaa5lcjlyrp0phrsji4zh5niv0sy4x"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.17.0"; sha256="1xq3m2i0b9rklg741796i8n1x0d07mn3xbdmvlc3islh368661jw"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.19.0"; sha256="10g626vyxaidiypjwymk183hvn4nm2vayvka127aavpfaq4ka55r"; depends=[iPAC]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="1.1.0"; sha256="1yhk7grm59ba7d7zwbqa9wlc00jzng9gdbaprpq9r5j6kj61id1z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; }; + SpeCond = derive2 { name="SpeCond"; version="1.35.0"; sha256="0sqb84sa7yf34lwwkchh5wb3dp6n4wk8kzqmsydx5lsaz6fxg32r"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.11.0"; sha256="1gjjibc2lck5ihjm9k6vh032igvr5zw8dp1r0561cq00sd8w1y2v"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.21.0"; sha256="08n37qnhfk6j6gf0scm5m6i7q8ags821v4lp8aw670kij8xm4j5w"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.7.0"; sha256="1fv0xdgzjmmsla8265732vc31drpija8wfdigg5cjhh89mrlpgfm"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; }; + Starr = derive2 { name="Starr"; version="1.37.0"; sha256="0is2fy9zf2cgl3ywkn89v7n134sh812gibr3mpb8iccplvis7dks"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; + Streamer = derive2 { name="Streamer"; version="1.27.0"; sha256="14wdvp51cgmzahqqr9dv5whgrl85yjj72sj1v3kqislqvfkn7lww"; depends=[BiocGenerics graph RBGL]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="1.99.1"; sha256="1madkjzhjlv7hh5av4pwkjk35vdmc5pcdsy70fngck4kvrhbs28z"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.11.5"; sha256="19qrcp3psnx3dpkcif3i0dy8fgn4nwliqii8v7mjllh2v6vz71x4"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; + Sushi = derive2 { name="Sushi"; version="1.19.0"; sha256="1pqgrjprsifbf6whzw4y01sqwal35c160ibg49d5rn1r22lyqkc2"; depends=[biomaRt zoo]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.3.0"; sha256="1fzkbl4rl3w04z449m3y4dwq4lmqjll0xsqg88kr1jy7k0bzhfnv"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SwimR = derive2 { name="SwimR"; version="1.19.0"; sha256="03qv3hcky138x449s5axc8j37j45hpalibmwwa3zd5a4fa15zmqr"; depends=[gplots heatmap_plus R2HTML signal]; }; + TCC = derive2 { name="TCC"; version="1.21.1"; sha256="0p2cphkmzlpzqy2shszyzwxga35hyp0q8n0aj9hbjzvapnil61pg"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.9.2"; sha256="1jbgv3p5dqhjkm5spn6x73z00ghjb1i4fbmn9xpns0v93axmd1k8"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble XML xml2]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.1.11"; sha256="1dmsjw34shqjhj59g4r3320pgh2hlssp8yb12mhcf21xs95a6pql"; depends=[BiocGenerics GenomeInfoDb GenomicDataCommons GenomicRanges IRanges MultiAssayExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.5.0"; sha256="1xir0481s72jwp0jnrb9134pv9vwy3g8mhk0rpzwr4qvxxxy7zxn"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.31.0"; sha256="19qk0kc7yi4z8kqg7a9msxdiazad3y7xvshmf6pk0999ypacqws4"; depends=[Biobase GenKern Rgraphviz]; }; + TEQC = derive2 { name="TEQC"; version="4.3.0"; sha256="1ldjq8ap4si95zqywhp27rzd8kgij2p9hvcb0w8qvzw2ndk950z4"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.3.0"; sha256="1c4gks6kvp8x68vnq7npxbq0q94gavbxvx3155prvx5qhsxw4jb8"; depends=[arules fields GenomicRanges stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.19.1"; sha256="1mi591pydgvkj5qzjlssg1lqrkgn2in8cj43af1nm9am7l92gwkw"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.1.0"; sha256="07vwxy4sv8d8ij3cp7p17pvdf1nwbq883iqdjpcfb57ah67ffcx2"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.3.0"; sha256="1j03dp2n459b373ig3yds88f1x5yawr9jqr91w2s8smx5vqqicm8"; depends=[GenomicRanges IRanges S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.1.0"; sha256="04q54z0hrskz3grw1ayzvcj93r3ziba01sx359c9syh6hbwzl5cd"; depends=[AnnotationDbi AnnotationFilter Biobase data_table dplyr GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges GSEABase Gviz IRanges magrittr miniUI Rsamtools S4Vectors shiny]; }; + TIN = derive2 { name="TIN"; version="1.13.0"; sha256="0iphf37gff3m1hyvijbbpp46bmjvwdppqrrwgf1yj660r01cyvyl"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.3.0"; sha256="1ga7mxlaxv4hglixlqa3kjrvqikzc46mrs1435aihhf649h8zz6j"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TPP = derive2 { name="TPP"; version="3.9.1"; sha256="183qdgly3a4xxiv1y8ckcm890dkg5rqyl99ab6pdgk3g53mx3pva"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; }; + TRONCO = derive2 { name="TRONCO"; version="2.13.0"; sha256="117vq5ia5q68z5ymbvi5y010l4qpwxsbwm9xxx5jl49a86np8s6f"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.19.0"; sha256="05zkydpl57j6b02bq0v3896612lbq33jbm896kimygbk4k2wa3g5"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; + TSRchitect = derive2 { name="TSRchitect"; version="1.7.1"; sha256="06vzd7vs9ld714jhzdd46ippdmzmwfg705kky2wrcz6lq547llgp"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + TSSi = derive2 { name="TSSi"; version="1.27.0"; sha256="1a4xvqmbx2wlhad1pb6013sas5gqm27kc7jhyqp49ccbwm7ayz4r"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; + TTMap = derive2 { name="TTMap"; version="1.3.0"; sha256="0fg0d930icbm62rvfv0d177ld126f1shm5knird50da4vx3qr1a9"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.7.0"; sha256="1514rfqdrp3s1z4zf53zprslqdbsdl1w3crfbqgsv6hisqrrwlm2"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.11.0"; sha256="1gbvfn5vpsbfbvpif8lvq55aav6ak619s1f743c7xj9md84rhx59"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetScore = derive2 { name="TargetScore"; version="1.19.0"; sha256="1phdg2ncvsjgjsfggxv37n74fwj8asw73vccb8iaqj8x7vlkci85"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="1.37.2"; sha256="065nq07xwdb8s7n4gg0bwdpbasdank6ga9nza25x0lsf1m4kky8r"; depends=[ncdf4]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.1.0"; sha256="12j0wkw964pbq62hiiavjk172hr3yp333v6c6g5kxmv2vycbxb3m"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.19.0"; sha256="12c30v6f9i841jyfprn3bxm9dimczwvn5d846kjxmpghf3dgdlgi"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; }; + ToPASeq = derive2 { name="ToPASeq"; version="1.15.1"; sha256="13wzyspyipi122g976hp2haqyjhhgnwpaj844w2by8x65nh1hicl"; depends=[graph graphite Rcpp]; }; + TransView = derive2 { name="TransView"; version="1.25.0"; sha256="1vlfncr2qv03r0b695ya47dd6h2m6qcvzndag1rqi5zzdn6p0w4q"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; + Trendy = derive2 { name="Trendy"; version="1.3.2"; sha256="09r1slmx8cr8hc8nz5kkhd25mp19nk3mvlsg3c15lx39n5pimnhs"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.29.0"; sha256="15k6cxxwjkb56r9b1r17va2ssq4da7z72dvvgj91bd3x6vqph13q"; depends=[affy convert lattice limma marray]; }; + TxRegInfra = derive2 { name="TxRegInfra"; version="1.1.2"; sha256="18ymkwfarxfh56y4gg2fh72fccgi2xyjnb4091bgfsg8nvib6wbv"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.47.0"; sha256="1nh15bs814s09cck4829r48n18g0w4haglbn826razjrcj5k46y0"; depends=[]; }; + UNDO = derive2 { name="UNDO"; version="1.23.0"; sha256="0csl0kh2ksswmv53cmy10b35ns5l9yg917m99f9pjrnql1n3ciq6"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="0.99.20"; sha256="1i48shbv1cwl1z4czpzc53iyab0d04aqw4w27w9cnvzxqs9fc0aj"; depends=[AnnotationHub Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicFeatures gsubfn httpuv mirbase_db moments shiny shinyFiles Sushi yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.21.3"; sha256="1ifzfghq7kk6s3wagjsvc1qz9gldfypgmniiw8pcsm1sji1y31ps"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.1.0"; sha256="0livhr3kqjhh7s45fahvmshk7f6bbakpx58x16l7vclb1dlzkhii"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.27.1"; sha256="1m3bjqif7kwnwwry5zdm74jysq8pnxzkgkdf75bjgw08gg6ykd6j"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.17.1"; sha256="0gfvnbs9wh4g3z029b6h5pjky84iz4i9ijmg0kz83v2xybnv1n34"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.23.0"; sha256="1kr4w5c1rwsamb168ahj74f379rk87qldm2mivhn73zq75qrawaf"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + Vega = derive2 { name="Vega"; version="1.29.0"; sha256="1zjdhszz65wpjirakkl53a4jqh43z6ryvndf0hxal4gc586gifcd"; depends=[]; }; + VegaMC = derive2 { name="VegaMC"; version="3.19.0"; sha256="1c4vfm2vv2xm6yw2ca57ml9bn6n9ddc2p8pcbxivxkxc8b5n2ysn"; depends=[Biobase biomaRt genoset]; }; + XBSeq = derive2 { name="XBSeq"; version="1.13.0"; sha256="014c96hz2nqjz865xmbhcsqqxxgssd9rn1j1pgmxakkz87mcnvji"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; + XDE = derive2 { name="XDE"; version="2.27.0"; sha256="1mls0fx2z2n7izmrmhpv6jg87x36d1j9x6gq51hhkzw5rbq25ng6"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; }; + XVector = derive2 { name="XVector"; version="0.21.3"; sha256="12p9s5d10cpm86v202gdw6y9gnsmcsny43gv6qnhz48ilzwql4mc"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + YAPSA = derive2 { name="YAPSA"; version="1.7.0"; sha256="1ny51v4papa067aylq7njyi2f17yp44y955szpark0lj0p759vjb"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.29.0"; sha256="0anj0gkbiccvb93xqzi7k1xxw2kqlwcf82pf4pqadc2fvmb1yfd7"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.29.0"; sha256="03lnbfg94xwrib8g40y4bazp122zy9nnpv4v1m18wjc10hi7z7qp"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.29.0"; sha256="1q5axh2494x2w40rqcj6kvrc3nbdyz117mxn39p1340ga7y2wxb7"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.29.0"; sha256="1vv7x9iijn88vkj4yp66swkipsdm347m2hs59g76bdypsd926slv"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.29.0"; sha256="1yhdsx23rd1mihj18jwvb7rl6kgyvbh4a75lsv0faqvsh9bk2k77"; depends=[AnnotationDbi]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.29.0"; sha256="1m79clrlf0f5f108vyamy2ia8sbxi3mm2kf8ckhbbsr6qgmnqcsb"; depends=[annaffy xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.59.0"; sha256="17nqy2sgkvjzhm3l8ypg93i7yzsniy536b2wz7rd6km52spldp7r"; depends=[Biobase cluster multtest survival]; }; + acde = derive2 { name="acde"; version="1.11.0"; sha256="18551wkanalxk32g37j2yg766qgddsxid0lzv2rb61gqjb7qrmpa"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.51.0"; sha256="1azczbx6w17a1awwpfc1bbgx14562mr41mgii7skm9r8jb9pxn4n"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; + adaptest = derive2 { name="adaptest"; version="1.1.0"; sha256="0ddrkkh8mh3fq65dz6rrxm9wykyalwa90jf5vb0kllgjd3n6hvk8"; depends=[calibrate origami SummarizedExperiment tmle]; }; + affxparser = derive2 { name="affxparser"; version="1.53.0"; sha256="1n81df9451r3pixakgjwi4zqna7gp0s9v6qrjpyw71294swi169f"; depends=[]; }; + affy = derive2 { name="affy"; version="1.59.0"; sha256="1z57jn6l79jwks0j64m63s5h4kxdxg08qjmi646765xlf3xi746j"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.39.0"; sha256="1mh1yqrdh47ggqibgghnlmjfq46n0w4q1hdji7cv1js6kry7wqcf"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.33.0"; sha256="0q41aznln8kngmv0q6036zvzbbk5sw46lhmss3npk7r6q0ryyvwr"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.57.0"; sha256="17vy0knf0vb3l824q2ib4hp0izw4s8phbjalsrzbwvmm7gg25xv7"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affyPara = derive2 { name="affyPara"; version="1.41.0"; sha256="1j81wl9ivx24jag4jnnv6viblpqba72c72nmcxs60cdqq44vs87h"; depends=[affy affyio aplpack snow vsn]; }; + affyQCReport = derive2 { name="affyQCReport"; version="1.59.0"; sha256="16sz9rii38vph2qiplab0f7fakd2vl77df543mfiykk3w5f0why2"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; + affycomp = derive2 { name="affycomp"; version="1.57.0"; sha256="167bgzq82zsl2mdgzai95msh188j10hwrmp4bqab5qh9h2s8phvb"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.53.2"; sha256="10zr09sqg6yf5f22qy0157qp03c479lxcdlippxawsq3x5dag533"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.51.0"; sha256="1p10bycid4dlhxhllalffywrc06xj1qjzs9f9fvj1y1yzj3xgmqz"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.55.2"; sha256="0i0psf8rp2ars1ibb13vchmgapb8mf1smmabgb54c8gmd3lzx6js"; depends=[affy affyio affyPLM BiocGenerics BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; + affypdnn = derive2 { name="affypdnn"; version="1.55.0"; sha256="11gwlr0ghw5c0977sgyhvghb953cgppp3vz3g1gfd3mdgkckvpqw"; depends=[affy]; }; + agilp = derive2 { name="agilp"; version="3.13.0"; sha256="1z7bxkdmqpz4kn1m2z91knnp36mp7z5awzj6qqwj7xwydc85m8np"; depends=[]; }; + alpine = derive2 { name="alpine"; version="1.7.0"; sha256="0d5r1izkx7lvl9f7sy0sy97mpvxaj05010vxmgw0c5yfpzzi3hz1"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + alsace = derive2 { name="alsace"; version="1.17.0"; sha256="0p17f29n1z3n4x2rpv4hja10aq5349653ra4hwl5fbli3fa0ww43"; depends=[ALS ptw]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.43.0"; sha256="1md8rb732bpsxs1r1mgvd9f98ixg596rn28pw6pq8bl8hj5jh3l9"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + ampliQueso = derive2 { name="ampliQueso"; version="1.19.0"; sha256="0nvwvvrm41vi289zp86s4yb0b6z9i54gq43vmvk1jh556rg1wsh6"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; + amplican = derive2 { name="amplican"; version="1.3.1"; sha256="16h9py6yl6nb2203wk00g0lvgkic4f9xdwzrxdq9rk1mlnmjbyd2"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; }; + anamiR = derive2 { name="anamiR"; version="1.9.0"; sha256="07xldx4dqc3s5vrankh1swg8a4hy50ihiw5wx5ndxvkpig8sspr8"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; }; + annaffy = derive2 { name="annaffy"; version="1.53.0"; sha256="0z97liznk6by9a7klw0wirpchd9n57ycsf80xsprnlgy60slypvc"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; + annmap = derive2 { name="annmap"; version="1.23.0"; sha256="0m74p8zrqhyfgpbqf4s98174y7gz9p1nh9q272xbsqn8ckdk8c0a"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.59.0"; sha256="0m384l8asvl2kswaar408w08yps7n822pfsxqby8igblrfzjgxjq"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.55.0"; sha256="18rxyi7sx93l52agbxnla1b7gn2bk3fpby0qj224nqinydjxkmjj"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.7.1"; sha256="0ccad82zrdy028dyycsvbcdijh2xl1ibjqz36wfnnnipxwc9fq89"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.29.0"; sha256="1najgyj4qn9954jxbq0c4psarsq8mrg6fz0w3p9vmcm68l8lz3ig"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.3.0"; sha256="0kr5wm6sirkycp0f017vqialqzzjadyfkm2fpv2zj6v8acnv3704"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.21.0"; sha256="166mx0y4b3j1vd3daxr9wd48d007qh1sj1vjssjfails6j4sy9lh"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.47.0"; sha256="0pqgrzfvljvinsalki5sc31c38k959g5gzag7sn33iilqw7s8grx"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.3.0"; sha256="1y9g9s68fqiinr2lwx10s5m533ccgbpzh4wqlf7nbjw696vshjnb"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.39.0"; sha256="1yrqx8vkbhwsdh0x3ig5wmy3ynx56154wgc69hzssvw38jdlp9vy"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.59.0"; sha256="1nhavhn4vnxvmj2hw8qlrnbyp3nsv3m90qcj20ijiv85jkr10mpa"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.37.0"; sha256="0bd78q63gsnh0bfspif6zgkp77wf634xcq6h53ka96qs7d98nxcv"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; + attract = derive2 { name="attract"; version="1.33.2"; sha256="15mrqxcqflm3f77s336dyh8q57ipr27ca81aap6pwfxgpqykay49"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + bacon = derive2 { name="bacon"; version="1.9.0"; sha256="018082c3g5cdi3i1z1q26cq4v1f529d1c2q92p6qyzblcs8m2j2m"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.13.0"; sha256="16x4bh9wdqw5isia1vwi8kynlfaxvvc808lnbdkz8964rfxn317i"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bamsignals = derive2 { name="bamsignals"; version="1.13.1"; sha256="1jyf9arivqk42zsj9k3fgjvz7d8ixlm2irsac4vkfjvr8nrfssyr"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + banocc = derive2 { name="banocc"; version="1.5.0"; sha256="1i86y34yhcaadl7ans6ypcr5yprqlnl4fl0bmr1k28pd8knwgq70"; depends=[coda mvtnorm rstan stringr]; }; + basecallQC = derive2 { name="basecallQC"; version="1.5.0"; sha256="1g6hisqbg41kwz16iw7ai2rbw6hvndv560m7jxa85cm3kl9s5dxh"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + baySeq = derive2 { name="baySeq"; version="2.15.2"; sha256="01iv53gsrqm0ia44dzirdfpfqdrav46xxwml7xmb6cfgafx118qd"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.3.0"; sha256="1l1zpf1pyf7r3qqif6f4fjzxrvcj18yz8ggads1q98z74nrzwgwq"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="1.3.2"; sha256="0mr1a8zcrrfs2klavq4jzw5lpcv64l3rvjpqx78jdhdvrfd0fi99"; depends=[DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; }; + beadarray = derive2 { name="beadarray"; version="2.31.0"; sha256="1kf6fzq11mr49xav1ivz366vpsjaqhi1l0k4751k79s6rr30m6d6"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.47.0"; sha256="1x4byqw6d2xy4db6pgbadsdwakw39lvw58dckijk2fwgrimzipn0"; depends=[Biobase quantsmooth]; }; + bgafun = derive2 { name="bgafun"; version="1.43.0"; sha256="02pv0b72m7xy2hqjdhz881qkp83api8lwbjngq7v29xhp7mpmgq3"; depends=[ade4 made4 seqinr]; }; + bgx = derive2 { name="bgx"; version="1.47.0"; sha256="1vh2hhjsfyx8laq1xym7zaxsakgwcp0ybha6xxdc18mwlwr3q412"; depends=[affy Biobase gcrma]; }; + bigmelon = derive2 { name="bigmelon"; version="1.7.0"; sha256="0r753dyi2ls6dy99zh519mvqqc9pr8vy16pyvmpmpvxg8bj1hx90"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; }; + bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.29.0"; sha256="0cxbd4zdvrpqycnvgw7svvngknscc4s9ycqp3csa8v1gpc9bj9cd"; depends=[bigmemory]; }; + bioCancer = derive2 { name="bioCancer"; version="1.9.0"; sha256="131a7la949ckklcbsr9rbm99nhaz7zlbk6ck7lhc8n55z5lig30d"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.53.0"; sha256="04pazvkmw36ghicyzbqvb7rq3kvpw7qrj01k7gddrg4c1dc2rdd2"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.19.0"; sha256="1c2xjbh0lnik1dn2iwicpd0y1swbnnz1zac1vlaabhmxdw2g1h0n"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.13.0"; sha256="1csxi4f7d0lg1j9sjnmp089pma65pq1k2yyimrh0vl8yw92zlns6"; depends=[Biobase broom dplyr tidyr]; }; + biocGraph = derive2 { name="biocGraph"; version="1.43.0"; sha256="1ps4r6rkffmqisfz5wip981r3dbx57n3r1j6whw9l6dbs043fjql"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.49.4"; sha256="1mgf21zbq8pm3iw8fsw700wzdjca1kf575xayaibblfsxcd1y59q"; depends=[Biobase graph RBGL RCurl RUnit XML]; }; + biomaRt = derive2 { name="biomaRt"; version="2.37.3"; sha256="087vd0csab9ph21ijahjj66wpwnbsd48mvym12y7wrw71rvincw2"; depends=[AnnotationDbi httr progress RCurl stringr XML]; }; + biomformat = derive2 { name="biomformat"; version="1.9.0"; sha256="1n8dwxkd6k0nvksg6dpcq84da9y9mjsmbn62362ja2kjgzqkh80x"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.21.0"; sha256="193cfwknlm28pm5n7ydmrnaczw7xisiz07l29jyk0h05jrmrvna0"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.9.0"; sha256="0v33vksq23byv5ybkb0mmvcb5fag3ghy9gcvb9aj16i7r0bs61ql"; depends=[Biobase e1071 randomForest ropls]; }; + biosvd = derive2 { name="biosvd"; version="2.17.0"; sha256="19l7mc1pbsbbzsb635iiqb778xq1lrlnmsnyd324471c3rnb1yn7"; depends=[Biobase BiocGenerics NMF]; }; + biotmle = derive2 { name="biotmle"; version="1.5.1"; sha256="0ihc1g60j1lkz3na23vvpd9c8xcz0p8wm5ksa6169zxjgqb90mmv"; depends=[BiocGenerics BiocParallel doFuture dplyr future ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tmle]; }; + biovizBase = derive2 { name="biovizBase"; version="1.29.0"; sha256="0cmfigqy4ajrsdgwiwnwkhnznk14phq2di7yijjr0n3whk2xbvp4"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + birta = derive2 { name="birta"; version="1.25.0"; sha256="0c8rvf63cq6rzax2vhgk4y2xjgylnygihgv8yw7iznhpvqxxqm5g"; depends=[Biobase limma MASS]; }; + birte = derive2 { name="birte"; version="1.17.0"; sha256="14xgvv12457yai92vvbpnc2fn4bnc129nrpwxl4kck09mh7kzfii"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; + blima = derive2 { name="blima"; version="1.15.0"; sha256="160vdrinkq6pw851sxc9k0ybhh1ms0zd3jnxri6gdysbk2c2da2n"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bnbc = derive2 { name="bnbc"; version="1.3.0"; sha256="07jzc55x31zn5ak5rlpc0xpqgnkl03vhpdrd8ay12n450zggd77q"; depends=[BiocGenerics EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp S4Vectors SummarizedExperiment sva]; }; + branchpointer = derive2 { name="branchpointer"; version="1.7.0"; sha256="0ii7y3as43g7yp2qbzxv0bz66ayng8pxgk95303fp2l2akjb7gnx"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + bridge = derive2 { name="bridge"; version="1.45.0"; sha256="11rqvigax6j1bqj1nyf4x6ssmqi0892m1rhak1wz3xcj4adb8vwz"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.17.0"; sha256="0mx9x996lhq63la9wkmygvdk8s215j3j833vx738prncc5wkkl4v"; depends=[Biobase BiocGenerics data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils S4Vectors scales SummarizedExperiment]; }; + bumphunter = derive2 { name="bumphunter"; version="1.23.0"; sha256="1dn6z7q8k54vd59dqirvdy6048ywa3c4njc2vrja8f5i2lsvfwc8"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.11.0"; sha256="0lxlk5wlfna009k2jk8kgj61ks3hfcx1lvpymidb2yjx0kk2n7sg"; depends=[bc3net igraph]; }; + canceR = derive2 { name="canceR"; version="1.15.0"; sha256="08iz3lih2rhnwd31pfq6ra6kwwgmmggrfrcqsivnp49ni19gy0sq"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.25.0"; sha256="059nw8y6319m8k3i4l4crbydia2xz8v3dzc1dgj0hz6v3gfkxh8v"; depends=[binom Biobase]; }; + casper = derive2 { name="casper"; version="2.15.0"; sha256="129grx8bb2scjsvcqgyxigsw1n36miqbpf8val5yzm0lv9zwv24s"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.25.0"; sha256="16zmqs8mf8lhsnlqfna40bq46v2zgqn823y98ycnx4c1m1l2jmk3"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.3.0"; sha256="19zy92jk8g5dzh5r2hpdc96yjgh0plqzn189giww65sq6hgiqvl2"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; }; + ccfindR = derive2 { name="ccfindR"; version="1.1.1"; sha256="1xp960q6jcskganvygxkpr9may680s30p57fjm5x625z4vwvd8r8"; depends=[ape BiocGenerics gtools Matrix RColorBrewer Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccrepe = derive2 { name="ccrepe"; version="1.17.0"; sha256="1k464wrgigq0yyr2w7pw8qwkql49jnl58ayr26785ajdn79lfcq4"; depends=[infotheo]; }; + cellGrowth = derive2 { name="cellGrowth"; version="1.25.0"; sha256="12flwz3pzjhwqxsljy5g2ylgxiygln24z5zydc62xrkjcg3wqgn0"; depends=[lattice locfit]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.45.0"; sha256="1dbjsxhfifjpmyn3w3zhmhaf3s2arrpl6lipg31sp9w9xfiij1xs"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.11.0"; sha256="1rkrj316fm2xx1x7wjk9qv2kdr4vxhbixfw7y2r1p6kvxl1xwdi0"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.5.0"; sha256="0067s59gq395ha4kjmdvqx3bdjgkgczwvchwjswr23hm6ffbgss3"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.9.0"; sha256="0rdknpw38cwf4vvq30g573irv4l51gyx9yaff8rkrd0b38bpywa8"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellscape = derive2 { name="cellscape"; version="1.5.0"; sha256="0was4lsw2rpg98kzdzpd6wv84jzfh7ncgnvsyc2ijbjanf52ycxd"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + cghMCR = derive2 { name="cghMCR"; version="1.39.0"; sha256="119nk170b8a8lr1hi2nmj2bgaydkxf11732bqxhpm13hn9cyvnpr"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + charm = derive2 { name="charm"; version="2.27.0"; sha256="0cgrh027qjy34nb0xd0fl7fxifpgb1i9qcy3g7w7vv0sgj5g2gxc"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; + chimera = derive2 { name="chimera"; version="1.23.0"; sha256="16l1y016wdmdqm4psnl3rxs4gw1d8b0hvfr29x9sv7153fpvqxhf"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.7.0"; sha256="12xkgvmqfdwfzrxw6f3iqkbknqw3238ks5903jk314wc1sz1pxxc"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer readr Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.5.0"; sha256="1ssvmnnlf6s37hbj0cdpcjyfz3qj7mv1nfxbdsb3cbq541lxidlv"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.31.0"; sha256="0pfi2jyi3cb73c6k0300k1yvk2nvzh6lc19qmgs9qxqm0zjh5vly"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.47.0"; sha256="0lvd5fpvlkwzplm6wpxrmi6gl35vg9li8zs8kiyf65yggp8azkd7"; depends=[survival]; }; + chroGPS = derive2 { name="chroGPS"; version="1.99.1"; sha256="18i133z22d7pmd4xkkm2ciqpawvp7lh7sx4qkcysixxi9cdj7iix"; depends=[Biobase changepoint cluster DPpackage ellipse GenomicRanges ICSNP IRanges MASS vegan]; }; + chromDraw = derive2 { name="chromDraw"; version="2.11.0"; sha256="17lb88jp4997nmdb7g3rmi509vn552rda603diq5qxjd8hxszhj7"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.9.0"; sha256="0g7vnv12m9db563p99kcdv9mjb5h2saxmvq810ckw3vd9hxla4sm"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.3.0"; sha256="1vx8ai2x3mmrlpqz4kww19q6drwhs51ndfhqvcm20hnjvw4q86fb"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.7.1"; sha256="0jhli9jzxi35j8ar94wjjqbg3d3ankbizx2ck5kfpsr4kz6cf91j"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.3.1"; sha256="1qylaxmyrh16gxh8l5isngs4ixk3v758f41r3nc15r1gbncdv7nx"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cisPath = derive2 { name="cisPath"; version="1.21.0"; sha256="0bgc9jm3lkpij938yd1jni7yd4jbahqgr6s9zlzrly24f3pks24a"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.19.0"; sha256="0d7xk559jg3bik9gwzi3lh51jspmq3ain706d2cm4dq96wms03a5"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; + cleaver = derive2 { name="cleaver"; version="1.19.0"; sha256="19jrmz8bjj9yg52j002zyf6v1as2k7m0g0msvmgvlsf0nvgk5h72"; depends=[Biostrings IRanges S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.31.0"; sha256="18jsfx4y09mzsah8w2pqwarl7h1kn76cm6sjh6r3dqikbzq24rak"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.21.1"; sha256="19gkqz94sxamw8gx1rib17j7sxivzflrhypkp4bsyqshkydyzgcq"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.19.0"; sha256="03hyifp94i9fj391gz0p73g2jkgfc4cjscsgiszmm99j4mjp6641"; depends=[]; }; + clst = derive2 { name="clst"; version="1.29.0"; sha256="0bz0hd7zjr9a225hg1jl0r86zvdz4i9i63grg0nm0dvs32pbaf2g"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.29.0"; sha256="0fsqlx06qd7bqdnk746pcn1w29xbpcpjazsnvk1dibxyxqkbqvjh"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.9.0"; sha256="1lmg17d3n97kp5z21wl2kyx140kmqlfwsm4q6qcq7j9zyfq2jrdc"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.1.5"; sha256="0fwbvm25ymmazw4i1l1v5bd0yrihzgiqmkycfxk5ismf9nbyny13"; depends=[ape BiocGenerics cluster DelayedArray dendextend edgeR HDF5Array howmany kernlab limma locfdr matrixStats NMF phylobase RColorBrewer Rcpp RSpectra S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="3.9.1"; sha256="0bz6n4y10f2kgkxmsr2rf8clqfsg2drgavx0xp36jv66bp511l4d"; depends=[AnnotationDbi DOSE enrichplot ggplot2 GO_db GOSemSim magrittr plyr qvalue rvcheck tidyr]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.5.0"; sha256="1naw9hprdgb2wxqcvjvzgmjhnl0cncixar7gzs7d63dyf9d3khzs"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.53.0"; sha256="1fz5l64c7sfzxvqrfxbwvla6k72dq32r9v9nsc4cycpmyyfvgqfg"; depends=[Biobase]; }; + cn_farms = derive2 { name="cn.farms"; version="1.29.0"; sha256="03nq4xyq4q4x9ajlz24pda4jy2vqnxrr2jyrfy54d54qqkn6hj18"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.27.0"; sha256="1fzsp4amldbfg2msll3synvwlwdsda1fajwsl5qxg83pcy0v8rm2"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.25.0"; sha256="0ha9nh485r7x67q25cj6r7m8lckw9bm1kvd1rvkrwn6nnlld8bn1"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.25.0"; sha256="081ljzlc0vq19h7w31ccqxbdhi2rivi8qrrvnxw6imj0pfckn1hn"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.13.0"; sha256="1vyzwrdf10n9ribfcacfxmsfkr6pm9g4gi90n2c5lhhn4983m1wk"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + cobindR = derive2 { name="cobindR"; version="1.19.0"; sha256="1hb6mwd6xqxgzdglz496cn39hmjnxs87qc0c633r6a2bhq8dpcca"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; + codelink = derive2 { name="codelink"; version="1.49.0"; sha256="0fqxdmzwx6vhclsamc4i0kshdnqpjpqgzrmjm2lwvjai2bnbiaz4"; depends=[annotate Biobase BiocGenerics limma]; }; + coexnet = derive2 { name="coexnet"; version="1.3.0"; sha256="0kqzvi5zs1nvcnbvgrq06fzzcfdsga5fz0r70drcsx449nkqrj5c"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; + cogena = derive2 { name="cogena"; version="1.15.0"; sha256="05hdmx7awxsrbblm0sfgszhi10wggpx2141ariy01gvha8kmm8l8"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; + compcodeR = derive2 { name="compcodeR"; version="1.17.0"; sha256="0b591axva9x93pq7cbcg9z86n6rdnaw29q18q7cwvd44j5l8b6ah"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; + condcomp = derive2 { name="condcomp"; version="0.99.1"; sha256="0493d56hqn1vrd85j7174y9i2f7whqy68nn5645fr57a0wl4bn4i"; depends=[cluster ggplot2 ggrepel outliers]; }; + consensusOV = derive2 { name="consensusOV"; version="1.3.0"; sha256="0jk776svh4krp1cj77sy9lrp3rx6ka8vbc4xz1armf9vd9sn0ln8"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.9.0"; sha256="0hdfnvvd06s2pbrsbrcp6nky7clvj2xqdf3d6x728mxfv17yflrl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.9.0"; sha256="1fgff5pr9ggqpl85yh410lspq0mbq9r264rsw716hqjy2rm6g8bd"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.15.0"; sha256="1xpq77j6zwqj3s8qxjvnzvrwk27g6cipqp8k8g1x61ayalw5mwn9"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.57.0"; sha256="1bfwmxcvg3dxygzbl290l645ri610fxymvba349hj785w9v09hgi"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.49.0"; sha256="08myzip07f28iyyf1v28y60pwmyabv7yhbd1y9avmmfa8swh4zav"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.21.0"; sha256="1qcrq5ls1rj5had0v2abcya5bbm1mpni97lxvlm75yxpalkrbmg1"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + coseq = derive2 { name="coseq"; version="1.5.1"; sha256="0b5680pzwalgl8dfdclc03cp9742ap65d16h86h150h72h55cvh1"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 gridExtra HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.15.2"; sha256="1n91gp3v27924pavlm4kkidihzhdgj5p679x5krxkqf430f3kbk4"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + covEB = derive2 { name="covEB"; version="1.7.0"; sha256="01qy9713bixj1nbdhafyappbm0m6q6k769akzysvcb4cs74isq3x"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.7.0"; sha256="06rx0g294hndxkb2rgjghn7jbw0vn63wy54705s57wmi0cacq8dd"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.13.0"; sha256="0wv304nisngcbc8as6anlb7i090wl078rs0pclix975akj9s4zpw"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.27.0"; sha256="1680ww5rr4y1jqhb267hbgk77ha87awbjrl3id5cz7d7ps75a7fb"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.7.0"; sha256="01s08znfbd4am3lxm42664jx5qkjm383w50k36f2linrsg8j2rdc"; depends=[AnnotationDbi BiocInstaller BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.39.0"; sha256="1piwi4w7shmszq2kbcw400jp0iqjhjv6q7kd7zpa4yqnh35dxa8q"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; + csaw = derive2 { name="csaw"; version="1.15.7"; sha256="18wy6q7qb4zif2sjgr0fygq6y3yj706iijib6dw2ywb4xsb7gqy8"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + ctc = derive2 { name="ctc"; version="1.55.0"; sha256="0zkzdv3yrrr671bvr0j7xi1c358r7k09f96x5sciljg95gwpq6fm"; depends=[amap]; }; + ctsGE = derive2 { name="ctsGE"; version="1.7.1"; sha256="1m8fm0339d17hfprwgpck31dqmm9cf1ajk60rii32sphv8x1h0r8"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.23.0"; sha256="12npw9nr02fs1lyj1fism4zbw1vbd47rxyyc21z8kx9ra5c76df9"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + cycle = derive2 { name="cycle"; version="1.35.0"; sha256="0wij6y9alg55kric7bs8syrw8ypd5w0iayh057qcl9qqr5lp1vq7"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.5.0"; sha256="1qch98a8p1wmyaccz7zg1vsamikr8rmrqki9w5ahkdn5f05z7fs4"; depends=[Biobase BiocParallel flowCore Rcpp S4Vectors shiny SummarizedExperiment viridis]; }; + cytofkit = derive2 { name="cytofkit"; version="1.13.0"; sha256="0dl0y609w2y3wpncw4mxhflrnq1ymdmzp8qwnrlc13ykkrcwh40w"; depends=[Biobase colourpicker destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny shinyFiles vegan VGAM]; }; + cytolib = derive2 { name="cytolib"; version="1.3.0"; sha256="0zyfs7j7jijrrg7v8zf77nlad63x8id2f9bpcid4pn61qlqxqhgf"; depends=[BH RProtoBufLib]; }; + dSimer = derive2 { name="dSimer"; version="1.7.0"; sha256="0ra9y6df21s97pa8810dzbcwjhbh9br86mlqkgvvrq5rxwj97a35"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; }; + daMA = derive2 { name="daMA"; version="1.53.0"; sha256="1ahmx5c58az3s3jybz3gx7g853n0qy7b84rm7gq157yi4iil01wf"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.9.0"; sha256="1w8lq1ikzfa2dzmx0bk1p3v88af9ddhv8fqqkvh2pr1n71r09nrc"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.19.0"; sha256="0bp4cclcwc6asnk5s9fzzcq17lv5fz93j0smsszq3csl99qpiwmi"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; + dcGSA = derive2 { name="dcGSA"; version="1.9.0"; sha256="0d85qpq1v9sky5x8nv5w0hfry9w833kkljq5laa2x3n10czp1hb3"; depends=[BiocParallel Matrix]; }; + ddCt = derive2 { name="ddCt"; version="1.37.0"; sha256="11nh9xzx3iyvbb1k40581ym17a0l2brcqmscx9riyh8bzh7jh1h0"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.1.1"; sha256="0lykdnbhl19nx00yxp09a2nvi10yq13dpqy30ixvbcjl04562j2q"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + debrowser = derive2 { name="debrowser"; version="1.9.0"; sha256="099gdj0vxihwyb35pfk3hhfay7zyz3nirzlzccnjknrybfdyd7i3"; depends=[annotate AnnotationDbi baySeq clusterProfiler d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 ggvis googleAuthR gplots igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva V8]; }; + decontam = derive2 { name="decontam"; version="1.1.0"; sha256="1chys2j507y4pqcca2vsf905qz7g7vw71f3rapxq39mhzp4bcjda"; depends=[ggplot2 reshape2]; }; + deepSNV = derive2 { name="deepSNV"; version="1.27.2"; sha256="0rm1wvw8qq20d4dcqijbsizhnyyrdvl6wwb6gfvafq5rzfdi01xc"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.21.0"; sha256="1378dj1gghsphwwbhbfixbnf49lfjxy0dn297b5lsjh2h40znc2z"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + derfinder = derive2 { name="derfinder"; version="1.15.0"; sha256="199nk5kjza1cy9rclgff6qq2pkzw5lfg69y9s60hbyd0hacxsqxx"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.15.0"; sha256="1v32nrznh4nm67fsjqcqbj3ifb8hiddqfcmg8nlwmgiwq78fxksi"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.15.0"; sha256="1zabxardj0gw8b4bscpkdxbddcd5ygxpgv0da6c7i04jp5qb80sg"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer RefManageR reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="2.11.3"; sha256="0z9z0frhif84rshnpffizjjv2ckr1mp7vqlk9r3fyyxzz1pkrl29"; depends=[Biobase BiocGenerics ggplot2 ggthemes igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother SummarizedExperiment VIM]; }; + dexus = derive2 { name="dexus"; version="1.21.0"; sha256="0p7ihli3la0x42v042azwxnjhwn6h8vlnfs8rrbg5wbpz1i3nsy9"; depends=[BiocGenerics]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.63.0"; sha256="19g9azy3s359k84rg677l0yndq13h48fs0rmddrs4z8z8w4k2n9h"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.13.3"; sha256="0ka8kma6imv3i2j1y2p83aandrmpvj6w1wqj5dsanx4mh6f316vk"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.1.0"; sha256="1dmf32f2mq4m71nbr8g5bhkv8wl8lhyljs5jgpnkzw7ibfaisr6j"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.1.1"; sha256="17g08x65glkgjn5h24h45fi9qdq53s9bmn323zpnc6012p8cx8vb"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffloop = derive2 { name="diffloop"; version="1.9.0"; sha256="0wfnh79xkfkkzm3rkx90i0ij81l33ssm03b91mfq02yzijqv5dzv"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; + diffuStats = derive2 { name="diffuStats"; version="0.105.0"; sha256="1dhnqf2nljmc3pvn9hwmnihlgg5qwjnh5almfzw9vgnwm10yrkjl"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.13.0"; sha256="1zy4na2sa2g8vg7aw6n8k3965yyhal0sp6f8rrgwgh3wd8w1zf56"; depends=[Biobase ks viper]; }; + discordant = derive2 { name="discordant"; version="1.5.0"; sha256="1lnljhz2xa7xfdbi8dwq1nzdm0w9j35251yh0dndhrq0sck1a3dg"; depends=[Biobase biwt gtools MASS]; }; + dks = derive2 { name="dks"; version="1.27.0"; sha256="04da9f6ckqzw8dppxrrcc7aqgkb980jq1g15dkmzx9ys54bnhh78"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.1.12"; sha256="0whd2fwvbf7xxxdw2dmfpn1xp3xp7w8jli9n0nj2yi0p0a98889n"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.9.5"; sha256="16d6j10b57llfwvg7kcimmhisg1rqmnvv3pb46fgn1mldahmiziq"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + drawProteins = derive2 { name="drawProteins"; version="1.1.0"; sha256="1bhdz04d8xv8hx821n6scni9gpc8r6qqs954i9dc1p366x995y8c"; depends=[dplyr ggplot2 httr]; }; + dualKS = derive2 { name="dualKS"; version="1.41.0"; sha256="125gpaykiy2cplkvixghj2c1xh08zga7jvi2xmsh0j1illdssab5"; depends=[affy Biobase]; }; + dupRadar = derive2 { name="dupRadar"; version="1.11.0"; sha256="17m3xmw8m4qaljlz3kw158mrnqcm3ss0c8dqla8j4p33mfyzc7qy"; depends=[Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.41.0"; sha256="0c4z54pw2pdfg4z2mm70w6h4my2kv1swndy50r4bjv0ll46yyvcs"; depends=[Biobase marray]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.17.0"; sha256="0siki1k4qvkgkyhldrz7i05vhria9nd9yvf848a4gkx4l68v2189"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + ecolitk = derive2 { name="ecolitk"; version="1.53.0"; sha256="14df276m23zlmz6q2lhbv2j91wj2jaxhs6wnl5x5gnjj1p8jv6wj"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.13.0"; sha256="1y1g10lkpkv0z6sk79ir91jarx0gdl9fy5lx4snykq1amk7b9ib1"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.23.3"; sha256="0lz12phiqppzyvq1mf6gfdvzpqf2jpf0635n6vym7nqpxpksrgiy"; depends=[limma locfit Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.7.4"; sha256="1q3fslmrw66z7x3anl8w7hszgz5qlq2f7d9hp9r6x4acipxni5ff"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.21.0"; sha256="0s0xrnxzrwp4cc0jw3a0vpx7psyiwjz4a5y3ajxr68lq7k09hdma"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; }; + eisa = derive2 { name="eisa"; version="1.33.0"; sha256="18jk4iwav2r95wfjynl9dwnhsm5n97kq0i7xv5dhgw2gqh5yfv64"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; + enrichplot = derive2 { name="enrichplot"; version="1.1.2"; sha256="0hnh32gkayps5zh7hddgwrsyskq19i2wqbs1ph627fbckk1xqzlr"; depends=[AnnotationDbi cowplot DOSE ggplot2 ggraph ggridges GOSemSim igraph reshape2 UpSetR]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.23.0"; sha256="0sz0xsnw4ycq1rja9nzdzayralrnvnds6adxg1bzbgsgnhfi9qv0"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.5.2"; sha256="047c06v6d3qxw72bj0ynqvh3sk9jyv3pswf15i132qg12jq7yn8r"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.5.0"; sha256="1kiaz5w2c793n3038qr8jyjgbw0shn8ljrargl0pk3d0i66cqah4"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.21.0"; sha256="11vcdklmg7ghwr3da1n5bnm272m0wgqinhc1gj3i6wpgcvijnwr3"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epivizr = derive2 { name="epivizr"; version="2.11.0"; sha256="14mmgfl9hqyx760l1c56hgfswbqpr34afvlyzjc459kyr8i57b5q"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.3.0"; sha256="0gbisd84w11fyl4zwwhakv2vv729ly9vh88zwixv46y4y1lln92v"; depends=[epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.9.0"; sha256="1r6pqsl8fyzqgwmg5msad2bsh7drgbyk39sn84pfrrv66zpp6yxj"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.9.1"; sha256="01177j6yhiwbiarpj0v98dv4rcfhxyj9s7brxmzi9s3qrkfw9787"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.9.0"; sha256="1jkhwa3wc391x961hy9k5bhbp5zjijs7y9fjy836yc54kdxghdq4"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.15.0"; sha256="0g8b2ngfc5a6cagpiqh1q2k66s3d275r03z1yb2lvaqv1bprx0s7"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="0.13.1"; sha256="01s2rpcbhd9hi2md5nzccral4ffp3xjl3qkkhm42q114dfbk5ccp"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.3.1"; sha256="0jdn6xhwvlsv6gh0lhmwkznlnv71dd3875qvna5livjvs2m8m84w"; depends=[AnnotationDbi BiocGenerics BiocInstaller Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + esetVis = derive2 { name="esetVis"; version="1.7.1"; sha256="0xhgq2w38wfyg1ixh455ppi0880yfp44ld8y44l8yz2646qp904d"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.11.0"; sha256="0372hl9jsk225zjm3ca63q95x4rcnj4i13r7192gfxzisy7y9i36"; depends=[Biostrings plyr R_utils Rsamtools]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.27.0"; sha256="003r5750vnadkvc19aaw8rf4qlfs1015nmndmsaazbg70dwkkdyl"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak = derive2 { name="exomePeak"; version="2.15.0"; sha256="1xyx8c1sflf98fp2588cvwmpz7f4bji6mwaw0297cj7h4893nb2a"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; + explorase = derive2 { name="explorase"; version="1.45.0"; sha256="18cch1m5k8sr9fjgfqv6ya2miwin89viq7sigpdv15r0xiz1js77"; depends=[limma rggobi RGtk2]; }; + fCCAC = derive2 { name="fCCAC"; version="1.7.1"; sha256="1cpma76xn4ddqyjsyhlgwa812v4p2kkby77diyy7gxha843ylncl"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.11.0"; sha256="0h94ivm66d3cnrf0cnrymq3b4a2v5jg38ylv8wylnidj5g98czap"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.27.0"; sha256="0lp2h8px9f4czvld93v1cpra31375qwvyfaq336jc7ib2myvdclz"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.57.0"; sha256="1kf98xygnq5pwjl7ak5jasrkgnrqhzpb81gljgsc0xp3a1mj37gn"; depends=[Biobase]; }; + farms = derive2 { name="farms"; version="1.33.0"; sha256="1xbndc128m1f5jv8firhgsbgyqvwrxma22182p5axxjf5qwymnl9"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.17.0"; sha256="1j3zhxcn21d81dh0afb5h84xh6lrfj0z7ldfdsqlr5f7l9niljfc"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastseg = derive2 { name="fastseg"; version="1.27.0"; sha256="079yskkxy0fvjckgc8n5nd3rs96q44v6078k3p95kgyr57sxa56s"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fdrame = derive2 { name="fdrame"; version="1.53.0"; sha256="1vxh7hjpqkl6wp1ycm11rfjn3xw56n4jj61j7gmzcb8x5f6nchr8"; depends=[]; }; + ffpe = derive2 { name="ffpe"; version="1.25.0"; sha256="0pkzf7rh51bb4ha8aimb7l49qd7zfm7hb6fambwwdf91l842d5i7"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgsea = derive2 { name="fgsea"; version="1.7.1"; sha256="1aiiqc3jbanlxa6q3inqzj1h81dpar2i05bmaja38k7inciaysa0"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; + flagme = derive2 { name="flagme"; version="1.37.0"; sha256="0pjyi90l7k2i7bm93p9yyvrx18jmwcg0gaj2wixa0inyx9w5bymc"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flipflop = derive2 { name="flipflop"; version="1.19.0"; sha256="0283bks3jbscnvyj51jm3z47rvdpfmaj40bc2h1ck8md82jrhiqj"; depends=[GenomicRanges IRanges Matrix]; }; + flowAI = derive2 { name="flowAI"; version="1.9.1"; sha256="1j2a7aivy54vlf9vhk2d12wfzr3jdqq6582wd7pi2sg5j15mbl7v"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.19.0"; sha256="16h0jd88nada5lsaxl7q1m3nqf7gzqc1hw9cv5q96qa8n13a50la"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.17.0"; sha256="0axib7fny5n1h0fcisy2ll67m1illv41swwi1xdc37d2v605c6jk"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.15.0"; sha256="1qsa6lkdang9x44wva0dwkgvv4kxqadk3jvjkg0q59bdf137irrs"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.19.1"; sha256="1fwa5r4hxnfya5ylzgx61nakfalsc0ahvy3da4xj78l52w17bjah"; depends=[graph Rgraphviz SPARQL]; }; + flowClean = derive2 { name="flowClean"; version="1.19.0"; sha256="091d79vx5w76xhhjm1zvjfyfv9pn4ni91a85yq2ca4laplsd0nqn"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.19.0"; sha256="1wkxfk1962cxwax2giyzva771rjxjcjy70vd9lsi7qkkxy5r3fdy"; depends=[Biobase BiocGenerics clue ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; + flowCore = derive2 { name="flowCore"; version="1.47.3"; sha256="0dp0aks75xzihg1nbyh441v76pgl3ikznzg1csswlzsnll4s6gdv"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.17.0"; sha256="1c3a12slk8z8y1vr8j09p2k5h2pw697ysk0a74p6n20sfl1zd3h9"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.15.0"; sha256="0ppvvcd9brm1xqrlz7cdj35knylahqyafaabm4b7qdnwf0nz578x"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.39.0"; sha256="02n85dv2qvxzwdi44mc7awvxc26nbwpbzawb0ikjv8gwf4www9ch"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowFit = derive2 { name="flowFit"; version="1.19.0"; sha256="0ydpczklwaf0lr1vhz0fcp9qi29gc0hbn8l4qnfa4l7r2s3md418"; depends=[flowCore flowViz gplots kza minpack_lm]; }; + flowMap = derive2 { name="flowMap"; version="1.19.0"; sha256="1viidnbhw054q1vl4d6xqsz1h1y764w1jsjs9nqgfnpxqmrlgls2"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.17.0"; sha256="0b1da6sfaykwj0dk4hbrj71q209jyarl0x40i5n324nj8r4ja7hz"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.41.0"; sha256="1ixzwry1435w20w40z87yhscbgskbldqmrz0x7nqvlqp5yn1ax71"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.29.0"; sha256="0imabypbjyn83jyb3isichi7fy4p4nkmsphcqbkimpjrfgc391kw"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.27.0"; sha256="12fw6vp5lar9y8k2hx8pjnr2km5bs1rjgdam3ifrfdj0rgicf6rk"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.7.0"; sha256="06lwd20c97lq5b9z11agvi4d9h601pxgzsi3xzkqp3q8c7xnpa1a"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.29.0"; sha256="0ylxkvhzghzybsi20lpprz430sl2d6mnrkbwp8bbsysr2ymsjml6"; depends=[]; }; + flowQ = derive2 { name="flowQ"; version="1.41.0"; sha256="0290mk6zj2f2y4qiks9z9lnrl87fa0024idmdcf7slwlngf59mfd"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; + flowQB = derive2 { name="flowQB"; version="2.9.0"; sha256="0d4n8qxja851z4d7ran9wr4rhfa64mnkhz7rqwa0vggrq1y0ksja"; depends=[extremevalues flowCore]; }; + flowStats = derive2 { name="flowStats"; version="3.39.0"; sha256="1bz0saqkxznyq9ilabi1j4nwd18yk1p740asj7zlirqhiik2x20m"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow]; }; + flowTime = derive2 { name="flowTime"; version="1.5.0"; sha256="0qh2p696xh8xsi0j7d6s75kbf8ajm4virfs8c6c1rn48n4grhlpy"; depends=[flowCore plyr]; }; + flowTrans = derive2 { name="flowTrans"; version="1.33.0"; sha256="1fqw49s9dgz4khq3m73bf8f7vy9xzhdl91n0rkmcnwq7kd6wm5n9"; depends=[flowClust flowCore flowViz]; }; + flowType = derive2 { name="flowType"; version="2.19.0"; sha256="1313ak0n79pvhzpckrapbkzrzxhd8qnxawpvagm92lsdg5p79mfc"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; + flowUtils = derive2 { name="flowUtils"; version="1.45.0"; sha256="1vrbyzhifqaf47a73hac75s4dnsg6fys3nhhl1rf81hsjhqh7q80"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowVS = derive2 { name="flowVS"; version="1.13.0"; sha256="16r8ig33ym1d8hp2hvxnlszifc0qpmd4vnqzg1nn31a4j3xf575r"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.45.0"; sha256="076hjz0mvc7pygmlrapsgg6scsxkzd714yg4wq8r8fbbpblqhkxf"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="3.29.4"; sha256="1669sl43r31ikj5mjzgmlynls994607xg0x2rz1y1dxcy84rb9vc"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.15.0"; sha256="0m1wbddxi2sifhpil00gd9vr27i75h30cw3a2m59hccxw4di139j"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.23.0"; sha256="1m8v98qi3x2cwr74ynndb0ilw8m8n0dz7w7fpyv0fm3s0vy3x0rx"; depends=[BiocGenerics ChemmineR RUnit]; }; + focalCall = derive2 { name="focalCall"; version="1.15.0"; sha256="1vnihlpxaplnjp7h9n3k3py0103qz98dnkm1p7hns93pf185ih05"; depends=[CGHcall]; }; + frma = derive2 { name="frma"; version="1.33.0"; sha256="02n251fwg34f0mkvingrsv1n0v77cvmpmd44rs1a4qyl5nj3x9v6"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.33.0"; sha256="1w62s3i6q92ka44dy8sqid21fgpjjghmnyavj3swx5czpn476vny"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.5.0"; sha256="175np47a1n3l9dkpfza9wdndxk3adk9np87c8hi4ybhjbx9w8bj5"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCMAP = derive2 { name="gCMAP"; version="1.25.0"; sha256="0mp0cg33slfpnqzk2fsggpb3dfgq95isj42lia0i3hkwkdfcisly"; depends=[annotate AnnotationDbi bigmemory bigmemoryExtras Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; + gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.21.0"; sha256="15fmiii9kkiy1p9d2h7hg9fi3kacifz6113hpkzkk0lic4phncg5"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="1.9.1"; sha256="1nscfxbyvy596sak9lj5g1wcbk7zprgy5654bbv69ain9p1i3kzc"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; + gQTLBase = derive2 { name="gQTLBase"; version="1.13.0"; sha256="0rszhclakgc0xyg8jdb9mxgwaqcb28rcs9pyrg31d0wxi44c90w2"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; + gaga = derive2 { name="gaga"; version="2.27.0"; sha256="09q5xfki8nnp5z4ia0l07pnvsmiwag7ahr1bxbic9aajql873ipk"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.31.0"; sha256="1lkq0xq7qz8vzd0y996c8yskh8wkm15hqs68krbs9z08scwjzpqg"; depends=[AnnotationDbi graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.49.0"; sha256="0bi19b9ndccrky2i89scjzgna5b2gj0p74licynn8pm1jfwla584"; depends=[graph rJava RUnit]; }; + gaia = derive2 { name="gaia"; version="2.25.0"; sha256="009lclb7dvy1mgxzxmp8nywcbq0jdq26qdla0vl7jb8p8vjp5k1c"; depends=[]; }; + garfield = derive2 { name="garfield"; version="1.9.0"; sha256="1pndkw2an642ldgz0lw07l70gybj5npfs9w8qi2wm77fqfih8lj0"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.5.0"; sha256="196fi5c1bhaq7qfxvw8jfbfahjygk1a6ykkjlrbqkhk60lzk9gbl"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="1.11.0"; sha256="0x0k557fydigj81610a39b8hg973wbjsfj0ailpjfa1grp77csa1"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.53.0"; sha256="14gcna1sagqizaryq5hv5907hw7agds8v0s2n1hd8k1yrpayhkwc"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.17.2"; sha256="13rkbhjis5fjzalj03bpckq4w177c6v2m4p7743yvjhqhyyah9pq"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.21.0"; sha256="0ikpsmjwbiq8kidyvllx51ih0b7jnw9s1nz6z6hfz21zf98kz9p6"; depends=[Biobase e1071 EBarrays minet]; }; + geecc = derive2 { name="geecc"; version="1.15.0"; sha256="0wfa0a4hlwvjsjvxk7m6lgjxjvph3392a4kskg2y1vphh916qnxr"; depends=[gplots hypergea MASS Rcpp]; }; + genArise = derive2 { name="genArise"; version="1.57.0"; sha256="08hrc2y06prmacdzrd3qnlbyzrr9127jgglq7babrnhw0dffjl96"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.9.0"; sha256="0nzbf189w2rg9hy7h7qcw3jpz9lhl2yq57rhps29lgmizgdml8qp"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.7.0"; sha256="1snpd1xy66kaj2mb8xjasgm3bipydxbrbcpvp5bny9shvk6di0cf"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.5.0"; sha256="0qwqb1sq6bw688br5c5lxvc7dxwg1qwwb30dn9pklgfgpnjwp86n"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.53.0"; sha256="1qrlk46y1hkgva2yrf8x2smy82p4kmzjpr7kyk9381rfl64nn18q"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.17.0"; sha256="0vlhskyymdnbigdq1qj9gimklcmzvybh74zn7f65if5ssqdgmj10"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.7.0"; sha256="0j3k3ijq7ml52avs6np7q5137fr348xi5012dkw1nmn4sqm9dwpy"; depends=[AnnotationDbi data_table dplyr GO_db networkD3 org_Ag_eg_db org_Bt_eg_db org_Ce_eg_db org_Cf_eg_db org_Dm_eg_db org_Dr_eg_db org_Gg_eg_db org_Hs_eg_db org_Mm_eg_db org_Mmu_eg_db org_Pt_eg_db org_Rn_eg_db org_Sc_sgd_db org_Ss_eg_db org_Xl_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.63.0"; sha256="0wn6gwj8v3xl11mhx40529hlssay79n24vn071saq2y475bxhgkl"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; + genefu = derive2 { name="genefu"; version="2.13.0"; sha256="1i0w1bhg93gpjwn2w2k9kz3z99vdifdf7a9nza8d79lirj4512p4"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.7.0"; sha256="1ydcahw9imi281xdgpr7asihavsks3jjh52nhdrx0qn5plml254r"; depends=[ape igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.59.0"; sha256="1yqxqxchjn31sqw3csk5y3jmshb3v5580q245skam5r5v2nw5lhb"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.33.0"; sha256="1rcly2dfm93lbsc1inm3z669l19k213zyq31kb4kkg1cnam2cflv"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.13.0"; sha256="04101y44lnxlxkyhb2gb4d0wr9cy1s1c31dsfhqgl1rhy8rxi5b4"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.37.0"; sha256="1xinqj7zzwjxx6qxi6mxrws2ajjm8cy7g9v1773x7mh47w9rz7mw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.11.0"; sha256="0vvc43ih4idj6jakm4jvwynvi4v90nndvbz18kb7nxb7fh1bl9m3"; depends=[curl readr]; }; + genoset = derive2 { name="genoset"; version="1.37.0"; sha256="0awbbvhz1qzra92ghal5wrqrkya4v0wd15q75dmqxb5xx36s8if6"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.13.1"; sha256="0qlzqfzpb74prq6b7zg77d610i8hj0d2f7jhi4l1difcgf8y7j2j"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + genphen = derive2 { name="genphen"; version="1.9.0"; sha256="1bps7mgznp5by1kfwmapnfj3vkdqiz3p3816kg9jmg7iggxn8gih"; depends=[Biostrings doParallel e1071 foreach ranger rstan]; }; + gep2pep = derive2 { name="gep2pep"; version="1.1.1"; sha256="0h6qf7fl2hmg5chv6g9qfj5ih4mfc6xmihqny9pzg277i5gwmdsj"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.13.0"; sha256="1qc9d8vp5s5rzw7bqbfm2n5l23yfk9d3kpmhyd4hnr9jb2h4jypp"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + ggbio = derive2 { name="ggbio"; version="1.29.0"; sha256="0skf5m8qglvv2y70jppjblvpl94cgimns02kprsqp85ghmbshy7s"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.9.10"; sha256="17pvxml685gic39ycgq2crwnznw7ih0g5bhynxziffnfg0zqb6fc"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; }; + ggtree = derive2 { name="ggtree"; version="1.13.0"; sha256="1zkaasmb2y1k8hqjr7cbvhasmv1ykclhfqj3h0s6m6yvh2iql9nb"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; }; + girafe = derive2 { name="girafe"; version="1.33.0"; sha256="0jdckfnsfvcqf7gnfbpxw12q0la9cxzfmhhy4n492fqavnzpbfgj"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + globalSeq = derive2 { name="globalSeq"; version="1.9.1"; sha256="105sxbs03xdfv6ikl517sj14wzn0cc92lxv5yfzabj2ys8911dl1"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.35.0"; sha256="150mf64cr528jzcpc9ydfs1kf9dwrr8xnw47abpkxgmfmqi6jl01"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.23.0"; sha256="0c6chbf3kzx3z57gs36b0bi1bc58514sklxkplv80z7xnvxs8pl9"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + goProfiles = derive2 { name="goProfiles"; version="1.43.0"; sha256="19r3h8rnfs826aldlgkjgsllk4wj95rq7lq37qd927bjgvi4kbnj"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.5.0"; sha256="13bnzz3adj9186sp992fbjp9442nvp7f0a80jnz1nygdr0d45i7m"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goTools = derive2 { name="goTools"; version="1.55.0"; sha256="1lzgsdqvwrxckg5pdbmnxldifrsm7zyvl72pl3sz8x2997b4lc97"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.33.0"; sha256="102w1cxz2ab0gyzamy9rcdbf73bgkvqrm0lxasz6m2h79j9gfmc9"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.53.0"; sha256="02yca8lllmq7lmbg55kn3yhsb0s9d2b828aj08lsp5hxmyill36k"; depends=[]; }; + gprege = derive2 { name="gprege"; version="1.25.0"; sha256="123ggwjdkc2la9vbv6kmv7l7pg0wz3jzk4q0df5zm38a3nr8gy7p"; depends=[gptk]; }; + graph = derive2 { name="graph"; version="1.59.0"; sha256="1pcn9rr9j679g6hgsh235nar5via1rmgj1dqpyp7sl9zfjrcim2p"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.27.2"; sha256="0c3ha2hjpzwbrv5jh2376ayd2c7j9z857m70rx8xiv5bn3kzvazz"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; + groHMM = derive2 { name="groHMM"; version="1.15.0"; sha256="1q18f8ibjwik01n54c373fss82jwamik430irgaya8q5b5659c0d"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gsean = derive2 { name="gsean"; version="1.1.0"; sha256="0aar598qdhppzkzrrmhzd1nkn7i3xci401yz3w5dsgz27fy12c18"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.13.1"; sha256="1nz1hq1nmn3759cnf7w2svkk7v6lzrp85l49vjwy7wfrpk612wch"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.13.1"; sha256="1y595365q7hw84sgg6c307d3h1bryml4rxq1hg2vcr2ai0cbb065"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="0.99.38"; sha256="0dcza6pscq9lndk3x1bc139fh3r61lwfrm88vizyaini7xyzd2p0"; depends=[GWASTools matrixStats SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.15.0"; sha256="001lz9pjr7ddlw8v69nvhmbdzzx643vd5akl7dzjx4z0kg3xyf55"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.23.0"; sha256="0dhq26aqqmnzmx3cnwmmrqa8zx5gxq48is1wmljvfn86qixr70xr"; depends=[Biobase fabia]; }; + heatmaps = derive2 { name="heatmaps"; version="1.5.0"; sha256="0lz2cxw3fxyvnmnzk95k791x8x3vjn5cif2bqp3zv2rlkwgdjd7m"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.15.0"; sha256="12q17c31j1q1jbh1z1ddlcml1wxin5s32yz9xk7dd7bxa81frpmg"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.17.0"; sha256="1qad1winpzjwjn9wnr7xvmspza2j0islsdqh7aig767svipw8870"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl rSFFreader sonicLength]; }; + hicrep = derive2 { name="hicrep"; version="1.5.0"; sha256="17k4wynjjbailalm4h0gghw5fz7gavjpdzm3ibk1gih46l24fr0d"; depends=[]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.11.0"; sha256="0wfv8pxnm8v1lwj1cbk4d7v0cyjzra8nm8gaawwr0aqcsg7ksp2f"; depends=[fastcluster fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="1.1.1"; sha256="1x7aa8vbmzrfw5psyc4a7qcsnhfgcynfvp5k7qba4q5cp85gcgym"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.1.1"; sha256="1rkyh115mn65rq90i7g3idw1n856v3r6139rbvaai7939rbi4gg9"; depends=[S4Vectors XML]; }; + hopach = derive2 { name="hopach"; version="2.41.0"; sha256="1i329clrw9bjxkchinadprix36xjak5x6i1zqpdj27kyr8w26gn2"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.23.2"; sha256="04h4xfmappx0vipw1fa9kd8n9hs4cpcfsllxcrq77akndkf1dc92"; depends=[]; }; + htSeqTools = derive2 { name="htSeqTools"; version="1.29.5"; sha256="0rigcwd8mc3kjsj0kxzxnspzqz0d1i58vav71p7a4cx76yrzi5z1"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.33.0"; sha256="0qcp9p3n7gxskvw8afz7yr2msm0gikl7v3dvzvrhfypad9czplx0"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.53.0"; sha256="1mj14bgkbs3p0smf6phfig2rcf7kd88d85djr6rq1c3vpiyhpyx3"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.25.0"; sha256="0p4m13k5n974469xh8vhz8xd5b37ill3i9jmglq0fa47n7rbdjz1"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.25.0"; sha256="1dbcazr88ac38g58jgr9byqaql36jvfn5bmr8gibn3hr187c5ypf"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.21.0"; sha256="19f1iqfcdsq0lg9hbl65qwb7lwp9n36vrdnyah63dn7k3c23p5x1"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.9.0"; sha256="0z884xysrf00h56l4djq1yrm8478s4f3jqq0bz6sf5wqzibr492k"; depends=[]; }; + iCNV = derive2 { name="iCNV"; version="1.1.0"; sha256="1kqsrw6pq4lcnfnf5ak4pdmcv3cr7p1jhmk304g5ywxpbd2fdfp9"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.9.1"; sha256="08nzcsph0w5zp6l2lwrg2624gsgs939rkv1662ic72jf8759i4s1"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.11.0"; sha256="0bs9zzcc1pbdvvzq912yqr2waic72jj4pv6ksqjg6s9wz390a4gc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.35.0"; sha256="0c610x3g5nkpwsrkix66s3z8dc24dv11dfidms757hc0fwchnsq3"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.17.0"; sha256="1ax42hac2wqkyawm9dwwzm0lf81cihric78j38v1vjic918l1b14"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.11.0"; sha256="1bcbf1azdb4svdjz8yaxs55l76g5c8i1h53s66qjhss8i3pjydr3"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.25.0"; sha256="1mdcr7fa2y78cnndsd8y08hrmlzbgbsgmhq0kzpszr79xj49kdzx"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iSEE = derive2 { name="iSEE"; version="1.1.2"; sha256="0x8pmyzpbb1x33ixh1jnpfs58l7b1d12r51gk7gjqxa291phg7zk"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSeq = derive2 { name="iSeq"; version="1.33.0"; sha256="1sxy4hxpds6k1flmspwf9y4j8wkr96142z64scigg9mf3p88h5zz"; depends=[]; }; + iasva = derive2 { name="iasva"; version="0.99.3"; sha256="1ax0594b3d2glam0lb4dzqzx8bbfdln0wglr96szjdxa6qi31ghk"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.29.0"; sha256="07954bdkijs41r0h39fhlzpd8d75vhlk8gl4zlbaky93prsmi1hf"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="0.99.10"; sha256="14yzjsydnv2k8x183l7a94jmxsd27p2ndwzdvkd93d5nkh5iq36l"; depends=[BiocGenerics BiocParallel Biostrings csaw edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.5.0"; sha256="1pdj0r0qfjwrwvsb4lrwl3mxd6wb4bwmabd9z413868453qk101p"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap plyr rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.57.0"; sha256="0nsldgh780amhdafafrkp1lzriwskm3l89fkn2licxvpw63rlajn"; depends=[annotate Biobase plotrix]; }; + igvR = derive2 { name="igvR"; version="1.1.6"; sha256="12jl0yj6pgjfvrx3rv63nj88zdvakzrh499gx4kz1m5s8wqxswdi"; depends=[BiocGenerics BrowserViz GenomicRanges httpuv rtracklayer VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.23.0"; sha256="00qf9qjinyqd16r3zv99cgkwxdy44f2i6q2hlhmic7942j6h6r55"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.31.0"; sha256="0d7l8w5i0nlfks1iak0qdkxrarfx280wyqbpig38bhbmzkv31xrg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + immunoClust = derive2 { name="immunoClust"; version="1.13.0"; sha256="0z17f415rqad4hmwhxgl1gh8a1r42v5yz38rpq9yhssq7w1mw8q0"; depends=[flowCore lattice]; }; + impute = derive2 { name="impute"; version="1.55.0"; sha256="1nb2zpnx9ia2br0044jky4kcqj2vw1vw35s34869i35n90n3vqqc"; depends=[]; }; + intansv = derive2 { name="intansv"; version="1.21.0"; sha256="0a2qrnw1jd5d7mqvmin54110xvn1089p16bfi14660qzip6cwb0i"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.19.0"; sha256="1iwv231mc6g2jp6l6b3rs0gm5n1pb7mbah522q3d4s563avs9g0d"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.19.0"; sha256="0jwsm5i5s6gkxb05n8fmsybyvi5829g6i6y39nxcpd189ihbmv16"; depends=[BiocGenerics shiny]; }; + inveRsion = derive2 { name="inveRsion"; version="1.29.0"; sha256="12pzk7ppd48ccmfr3q2950pfckcc2kfvgnailwai7jxgss1h1148"; depends=[haplo_stats]; }; + isobar = derive2 { name="isobar"; version="1.27.0"; sha256="02aa78jia246w729bg4pl54shjwp51yymskhy842xnznw01nd8p7"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.9.1"; sha256="1k60zgb2b2yqwzb02nwvri10p1a2qdlgm4g0wg6593fmkr1q9p8h"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.3.0"; sha256="1bm2ld3w6sm1jn7s0yk9v7d53xmf2ix411p7pp2fyjqfj6vl3iz4"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.39.0"; sha256="07xy5vjmgzglab6hp82xkd6gc67lb58n8g26zvssldpzm1kir70j"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.39.0"; sha256="1cj63g97xm05clix5cv3dmjdwb806rb5va262hfhvmd2aa6bgq2k"; depends=[BMA leaps survival]; }; + iteremoval = derive2 { name="iteremoval"; version="1.1.0"; sha256="0ggmvmif5ak35mjzd000dflcbnp0zx14zspn2nabkak74zvdjsgm"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.3.0"; sha256="1730rd55ws484q4iwgd06cps8jfg7f1wzryjr0gzaykxq7n2yi94"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + joda = derive2 { name="joda"; version="1.29.0"; sha256="0n76l7mrkqrsvjq67hp9am3b6ixi2v9vz7hppj36y37r02myhdlb"; depends=[bgmm RBGL]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.7.1"; sha256="1fvvc8181vasbdky42yijhknm57pypb6abkswl9si91fv2zm4z28"; depends=[bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors]; }; + kebabs = derive2 { name="kebabs"; version="1.15.0"; sha256="061cpbsqd444p3jw08kv72b3q2cbrzd1939vgbbsg98l550684bs"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.33.0"; sha256="11a1d08pycj99xzhwblgrjwl6idm6l90i0ya1c0q0bwmaiyqqbwp"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kimod = derive2 { name="kimod"; version="1.9.0"; sha256="1q2ndbpw13c9a6g5vs29w5zzrw3ac5y5rjnndw660xljfphid6x4"; depends=[Biobase cluster]; }; + kissDE = derive2 { name="kissDE"; version="1.1.0"; sha256="0k5jw601sygbvvqysha243mbhwqv80c6k8dmbj9mdqpkd0bxw6aw"; depends=[aod Biobase DESeq2 DSS ggplot2 glmnet gplots matrixStats R_utils]; }; + kmknn = derive2 { name="kmknn"; version="0.99.13"; sha256="1qdsm0y1saz594s2bijqwfg74yjds1s55mzsw26sw11rvk63x1z6"; depends=[BiocParallel DelayedArray Rcpp]; }; + lapmix = derive2 { name="lapmix"; version="1.47.0"; sha256="08qj6i6y42ax82j29maf89zs0k03iv6p30v1zlvgixfh1p86ffk4"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.11.1"; sha256="0z53xkh2khlfsnvr0nqsw8k6s375ba2y5a3njbr9qnif3r0846km"; depends=[BiocGenerics erma GenomeInfoDb GenomicFiles GO_db Homo_sapiens Matrix Rsamtools snpStats VariantAnnotation]; }; + les = derive2 { name="les"; version="1.31.0"; sha256="11ad0v5j31s8kcg4572ga4znnpx9ry83m994bqbk3h51cb48pzm8"; depends=[boot fdrtool gplots RColorBrewer]; }; + lfa = derive2 { name="lfa"; version="1.11.0"; sha256="1vww3lfzb3kx2hp1cm48vg1rmnazgklz1qz1y36yydg53lbl8igi"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.37.2"; sha256="1wf9xpp8l43ld7mkinqznd2dxlpw4w9vgd8y8zg9nz7gp5h0b148"; depends=[]; }; + lmdme = derive2 { name="lmdme"; version="1.23.0"; sha256="0192ffh3qmqx31d67zxr8sg7qvwd4wmcgzxq44w9sflb947sn8ds"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.1.0"; sha256="0lqixyyv6wrmqbfl67yy131421pmyi6hp7hn11lbf3xm8q56smah"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="1.51.0"; sha256="1bijly35nfy6ix6b0h2salriy143xyc3l591hcngvif504zjd57b"; depends=[LogicReg mcbiopi]; }; + logitT = derive2 { name="logitT"; version="1.39.0"; sha256="0ynd7h26ask2i15cxikx9igcm9cdmmihg561l1dv3m9zw84s6mvb"; depends=[affy]; }; + lol = derive2 { name="lol"; version="1.29.0"; sha256="050i433xkj365q7k5i7gw07z8li29myd3zgavjg14p9lkdcwia0w"; depends=[Matrix penalized]; }; + lpNet = derive2 { name="lpNet"; version="2.13.0"; sha256="1k94rsji8p9ri8mvs6xc23dm4fq4pxcd9323c6jllq9bdljxffkp"; depends=[lpSolve nem]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.9.0"; sha256="1lsxg37yc6ddnw13dfg79yy7gz0ppv5mp92cvxc8pyh7x4m4mbaq"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.33.0"; sha256="1i192shbsczsnc7j6z1hqks6bsxq4rbkfkxbb99y77m7xzzw642i"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + mAPKL = derive2 { name="mAPKL"; version="1.11.0"; sha256="093kg8mildsmq7w6xa0ml86m8lyn00rafz3q3p9adw6i2x3lpm1b"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.35.0"; sha256="1nyzymd036biskr5b5gpz8z14mqjsxrbj2mn0sv9vp22lkcj0ls3"; depends=[Biobase oligoClasses SNPchip]; }; + mCSEA = derive2 { name="mCSEA"; version="1.1.1"; sha256="1fj53j42p62rr1chyb22wvqd25iqd1cwgw1bdgdzpx8n0d9lh64d"; depends=[fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.15.0"; sha256="1xmhzllrj06g33pa1yq4mkg9sg8dhi1fz4239763pnid8l2jz40y"; depends=[MASS outliers qtl]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.51.0"; sha256="0hj93i05fqjx03c7lbdk81985v1qyy89yjwqjd75pqiy4jx2yy8f"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.19.0"; sha256="1hn35cgd9571b5vz3wv76lhg2hr77kl1s6r6nmpnjph4asqhj7yg"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.53.0"; sha256="0gf80ff0jhag6mj6r888ivla5fccrdg63d7wh1g322ygp5b27h4s"; depends=[Biobase MASS mclust venn]; }; + maanova = derive2 { name="maanova"; version="1.51.0"; sha256="0az1jxfmjjpz3aqb5hvxpw912rh188b6gf02jj3q4v294131rqw4"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.55.0"; sha256="1bmalm7v6hxab5vcqqq6s3s2313xq0pifk7yxq20kh7n8m7n64iw"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.55.0"; sha256="0pywxxcxbi3wihx7v67rcgk7clzwkc0611687rq764xlkwljaxfw"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; + maftools = derive2 { name="maftools"; version="1.7.05"; sha256="070w04yq3khxl3pnd96cw8kxfv1j7iwwqwpc618pnarr7ii734mz"; depends=[Biostrings changepoint cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson Rsamtools survival VariantAnnotation wordcloud]; }; + maigesPack = derive2 { name="maigesPack"; version="1.45.0"; sha256="04ihpaqpkimf5k2j8hf2zwjqm6s75nkr1bn8gsvg21m88gajsh3x"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.57.0"; sha256="1v9a3r9gxijglxyhjb52jqm6p9vqkn549cim9zbw6mhngn2cqnzs"; depends=[affy affyio Biobase zlibbioc]; }; + manta = derive2 { name="manta"; version="1.27.0"; sha256="0p3r0l0sgnf9rrih35a3n7c6l9a3q9xpd2hilmf3pbrrc5hrxnhm"; depends=[caroline edgeR Hmisc]; }; + mapscape = derive2 { name="mapscape"; version="1.5.0"; sha256="0fs1cn7aw2awgjqmjjb70p5pz6fdnwfvix57wijvalc5qy777h1a"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + marray = derive2 { name="marray"; version="1.59.0"; sha256="01kgc79bhg5yg1zkglkpm85zrhm3dl5j63hvxbll3xsrrmy4bhs9"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.1.0"; sha256="1aj39flz18cnl9042hqlnqzyq6ff9j4dl5b2fm29y150s0j2wz5p"; depends=[igraph Matrix Rcpp RcppEigen Rgin S4Vectors snpStats]; }; + maser = derive2 { name="maser"; version="0.99.15"; sha256="12i7yzv4id25186ny5j4bzjlg6jwrk0mwisnpaakvk9fwja4ygl5"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.25.0"; sha256="09g28yd1jwxrvqh59lbcnni8ba1kk0gkgcxb2x7s9m35nx8sdr04"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.17.0"; sha256="0gf0j965ssrawvyx4i3mq5xrwbjy73vplig3d5518425l38g3ajp"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.23.0"; sha256="0gkn4jx9fhpgdrbcqvq6yjy3yyh1fsxw7gq9izcy2mkyp9z2343i"; depends=[]; }; + matter = derive2 { name="matter"; version="1.7.1"; sha256="0vjabjvh3gcxlvjbyncvj6jngwg701h9kr9w334rz1f4l9szkvrl"; depends=[biglm BiocGenerics digest irlba]; }; + mcaGUI = derive2 { name="mcaGUI"; version="1.29.1"; sha256="0klxp5g2s7c6k93imdkc9dxvzzvb89d5jf7x7p7v0mmsm6rbhg95"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; + mdgsa = derive2 { name="mdgsa"; version="1.13.1"; sha256="06p6dfffc7h80wzsypq1xk80q1ilzqpjxrwmvi70sdqv9fc9ac17"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; + mdp = derive2 { name="mdp"; version="1.1.0"; sha256="0a5r860nywkd35h16vsgqqj0iin0ldbra0b8cs1ql2bwmdjccl7i"; depends=[ggplot2]; }; + mdqc = derive2 { name="mdqc"; version="1.43.0"; sha256="1h0pk6amx5vj9zxxwa3aydhnph0cn2qcibz7xk5whpr3fqrzk1b4"; depends=[cluster MASS]; }; + meshes = derive2 { name="meshes"; version="1.7.1"; sha256="1ccbl1gnsapb5r60d2bdfgrj2fmn1glk5yxjxjlv68r9xkv0nfk8"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; }; + meshr = derive2 { name="meshr"; version="1.17.0"; sha256="03q7ihrg2a61kw3nkb13jn2fj3mv0p9g6pas5dm62z5i0yfgqypz"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; }; + messina = derive2 { name="messina"; version="1.17.0"; sha256="0zllyp3azgv0yyx0hdcad1bv41shqvkyw143nb7nc79x34zgm11m"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaArray = derive2 { name="metaArray"; version="1.59.0"; sha256="0xp7qnvgj9qa83lwv6dcbs3fw41jyp1lsw17n87jr9x2gnz9v2ly"; depends=[Biobase MergeMaid]; }; + metaCCA = derive2 { name="metaCCA"; version="1.9.0"; sha256="1i8qgq7qxngkrgibwqh8c6yigpi5w7bf1jivpmkk1swzlsa620y8"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.17.0"; sha256="194pw7fbf9nr0wxq7fbg4j45lh36va6ypr62aj8zc6l2hh42d2b5"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.21.0"; sha256="0fcwfk0vz0pa5pykxlf4g8zg5iyd40qncq40kh8zydymkkz7njqg"; depends=[NOISeq Rcpp snow]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.15.0"; sha256="09mx5a26maf4zm670r17xs9bfyn7xz6hhyjh9bbbkm4lf0fyph22"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.13.1"; sha256="0lyv5mm5bvvj2v3519swvwwsgmma952ccy8rxnpzr628lrvllcw9"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; + metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="2.1.0"; sha256="1dbw7cvyrh4w8cjqdvslph3lbrxxyxnpc71l69myasf4w1hwwsjb"; depends=[ape Biobase Biostrings dbplyr DECIPHER dplyr lattice lazyeval magrittr purrr RSQLite S4Vectors stringr]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.23.0"; sha256="09bfw6g9k4mimnlcrqf5690gpwn5f02pcairnnrmkx5kx7smj4zw"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; + metahdep = derive2 { name="metahdep"; version="1.39.0"; sha256="1zm6j0i9myn4q4lwc2almy6d6khg1kqb8ij11cr5dhxmwx444ma8"; depends=[]; }; + metaseqR = derive2 { name="metaseqR"; version="1.21.0"; sha256="1ny7srzlw1gv0bf4zflji0k48s6mw6cl2141y5l6wxwyiljgxvdp"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; + metavizr = derive2 { name="metavizr"; version="1.5.1"; sha256="1wvdzqvjlr2ygxkq2pvkfw5xdr09yafmalf4k5ya7mc70cg6w7nb"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.3.0"; sha256="180lha5avnrlnkc709hy5akmajwpkzb2slk7gf7641349lx3890v"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methVisual = derive2 { name="methVisual"; version="1.33.0"; sha256="0pyj09zkan51w6w0wnkg3ww49hlwqarl5sfw7wrbarfdvxvlyqpa"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; + methimpute = derive2 { name="methimpute"; version="1.3.1"; sha256="09v7dw2sdkzrypw9brqyym9ipmplww2r3jh5fybw66zj2fiqxhx6"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methyAnalysis = derive2 { name="methyAnalysis"; version="1.23.0"; sha256="1fhhk2yqcq2rh30369izn32w7jzcyzhlwaa5wcds4mb2caiyr4kj"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.5.0"; sha256="1bf765bvv63xp3fxxf9rx0x5z8x4sk1xfwm67nm10shsd4wbh0za"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.7.4"; sha256="1mi3w3b60k1nnrp7g2dv4b561y9ws493n5v0s8gwz4w7m12xb2qx"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.19.0"; sha256="1rzx8sd1kg4krzjqbnv0fi89lgc12xjdzlkbc8dpj8mx8d6gp8xg"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.15.0"; sha256="0v00cc5jiw0n6nxq5nvbmaknbanp0gbzk8d3p5igfj3pva6zvpjy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.27.0"; sha256="1carjnp9fbldzyms0cnc5lv92y4cxgzri9wxd5m4svrdfagnj75z"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + methyvim = derive2 { name="methyvim"; version="1.3.0"; sha256="1w8jm4qba2cqi1ghrk0lmwhmdh6hn9fdbzh8f3gf7hlbbg5wf678"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi SummarizedExperiment superheat tmle]; }; + mfa = derive2 { name="mfa"; version="1.3.0"; sha256="14qb1l4czylj2jid2fqk24pqkg2rgv4fs2d719xmd8yd9snhda7r"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.29.0"; sha256="1vhp23qx5vzaqmn06vngfd9c3y5ygizc6hhx1ccv7m5x4lz2a4jg"; depends=[gplots]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.5.0"; sha256="0gj23y3sk269j0zci53f9b3mdqvdnk84awg80zxv5s25wjzsvwwf"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.11.0"; sha256="12xyplcm923lhwpjxwy8a9xfn6mrhpcf264kyckzswmxzvnqy3n8"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.9.0"; sha256="116zkdwspzb0rp6yhz9bjfarbi2mvvlngsb53zs1js59kzsrw06a"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.41.0"; sha256="1hndq9aq3r3mci5j9ysfkb8kdw2zp7bbi3j7qfcdchm9q3g78rya"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.15.0"; sha256="03i5bbjygkas379kp6frf68d4f7md3safbkayqiccdaq1vszah08"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRcomp = derive2 { name="miRcomp"; version="1.11.0"; sha256="08b4na83sdp3q6hcadbyc59jmd151vwg26prjvxvsmacqajlf2xc"; depends=[Biobase KernSmooth miRcompData]; }; + miRmine = derive2 { name="miRmine"; version="1.3.0"; sha256="10j2f6ldxxf78aps1ygvdzpvga5smb4xv9m4mhgbhl9qfbkqvkd1"; depends=[SummarizedExperiment]; }; + miRsponge = derive2 { name="miRsponge"; version="1.7.0"; sha256="1w61pnjzp6g7p6sz6y88h6zdifmqdijr89y25rqrgk6ybz50206j"; depends=[clusterProfiler corpcor DOSE igraph linkcomm ProNet ReactomePA survival varhandle]; }; + microRNA = derive2 { name="microRNA"; version="1.39.0"; sha256="0c1dvhp81kxv1kxr77rl7wgq5wr92gj37m8qsgn0b40zs5b1b49i"; depends=[Biostrings]; }; + microbiome = derive2 { name="microbiome"; version="1.3.1"; sha256="0vwx4m4w26lrs5n30ikc5h38bcbpi5ynfiqm8kbnqmldzsfcq56q"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; }; + mimager = derive2 { name="mimager"; version="1.5.0"; sha256="1jl3j7l75g04a7w2cf7kgci78b2q68wadpbq8hcg91qrr1jahw89"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + minet = derive2 { name="minet"; version="3.39.0"; sha256="0lbga3id91swx8vnfcw4vgwq5bypr3a110il3a84kwr9naq9vnvi"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.27.5"; sha256="107y7npvk5cdr7nz6ll8whyhc83ni1wl3vsx28wyblh7qwk3fh64"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.11.0"; sha256="1f6xi68rgc5xgmcpv25lfz9khdwh94k59a2r2lj81y7h1fg3asck"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + missMethyl = derive2 { name="missMethyl"; version="1.15.0"; sha256="027avacdx9h4b2gj7sv0a1a38iaby0x882zbn25zh4fabgjclffv"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; + missRows = derive2 { name="missRows"; version="1.1.0"; sha256="10wj9g5xy3y7zk3n0nnkvppj66zl226bd5cjbkgwicz8kb29n4ld"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mitoODE = derive2 { name="mitoODE"; version="1.19.0"; sha256="1qkhf4y5cnwxv39lacdph3r030d9d4jc76lzgg9gl7gyk9801rhh"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; + mlm4omics = derive2 { name="mlm4omics"; version="0.99.20"; sha256="1h6s1ddj73wy1v79vpvjsf5hkjyxf3fha5w2n2cqr89ix4k76l3l"; depends=[BH ggplot2 MASS Matrix Rcpp RcppEigen rstan rstantools StanHeaders]; }; + mogsa = derive2 { name="mogsa"; version="1.15.0"; sha256="02a9p3awa8lix75ghw8x0nm9dzccg57ydyg1hr5kxx3bq51lvj3v"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monocle = derive2 { name="monocle"; version="2.9.0"; sha256="15m4221g6m5r8w3af9qk8jxqnqjjj31xvfcxi2n7dhfvqw4f35a1"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.19.0"; sha256="1d5b7rhxzzzlyapfq4fmml8k41fpha2bw398jzq6xsk52wfjjbiv"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + motifRG = derive2 { name="motifRG"; version="1.25.0"; sha256="0ramq5yk9ri04waj16vgcvr8jgd93afn2q8yr4avzaq9a1klsh7a"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; + motifStack = derive2 { name="motifStack"; version="1.25.0"; sha256="0ry64xf3gsiapickxzhbh9sn4yhwnvg9vqxv6wrj565wl284zd1h"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="1.11.0"; sha256="1kaadjkcvdm1i8cpnz4qfyiwiffd0h61wx8mwa4x1xqyiwj5s04y"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.5.2"; sha256="0cs9cp09r6k63ap131ir13hcswipwshdzy2gg562v8yrnysvv96p"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.3.0"; sha256="0p1v2nbxw889ck8jsvw0qkxqxnpzqvha2k64r9f8xg2d06pfr7ya"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.3.0"; sha256="1bh73npgphq2xanx9sc9yz0dpcilcvwnwz030fpy2mvaipnrqpjc"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msPurity = derive2 { name="msPurity"; version="1.7.1"; sha256="0jf1r0p2v20g87lirzi956vkrzm25px9q47pbjfw3k2hf4k97pwp"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.13.0"; sha256="0z2haqbz22q1zxmks570vky1a1i101pscq2ryi50aj78g4k87ad1"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.5.0"; sha256="1hlpg3zd4w514f1p0c36jsgg0dlirmnw1fq5l734yabgbf6zkv3l"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.19.0"; sha256="0xni6k9ij49zzxlhnbhn6v0nij49m26cxyv6xdlwfp0jh37390gk"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.19.0"; sha256="1kz9s9dc4rxz77k743ql6j84h2hv8fkbwl7707gqfs5789gj7w41"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + multiClust = derive2 { name="multiClust"; version="1.11.3"; sha256="0gjn9pl685pkl2yv6dbkdqr9hc3pcl39fk2h3nrd1irl7gf7isrw"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiMiR = derive2 { name="multiMiR"; version="1.3.0"; sha256="1zhpsipbcm1hqcc75nf0xjfm6v4nqc8bgp9pgj1v5q4ni8vffzsf"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.5.0"; sha256="1z750jwpvcl679ikzlcyy0yrifx13abxy8wigsxwrbc4wcljqyqw"; depends=[doParallel foreach SummarizedExperiment]; }; + multiscan = derive2 { name="multiscan"; version="1.41.0"; sha256="08s4rpikrjzhip9zpb5dc0fi98hj304qlcvxm1agi881awlvpkig"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.37.0"; sha256="1xlizjdzvxn0i9gs1jpkb07fkkx1prrr1v5n6kfvff9izh40cx6j"; depends=[Biobase BiocGenerics MASS survival]; }; + muscle = derive2 { name="muscle"; version="3.23.0"; sha256="110wvrf2isiw2by15vkxsds5sxy68l1vav8fq55f5f8lx77450yp"; depends=[Biostrings]; }; + myvariant = derive2 { name="myvariant"; version="1.11.0"; sha256="14mskpia58g17ydcv2d535kslj0fwm8rm0n4mv1qm0rff81v5hn3"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.19.0"; sha256="0czwvilzp756qfyjzf6x4wskg7w35zwl3df3md4p03v95c1ynbdk"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.15.1"; sha256="0m9q5ja326wz7cjmd6b1lvkhjggg5mlw8mxaqa90fs4qz6cr8hw6"; depends=[Biobase BiocGenerics ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.27.0"; sha256="0m29ncb8i4xndialy9x8iagyvamiacq6jvdbl8v9m0f18ygv9y81"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.3.0"; sha256="0558086vrjiliwpjyvwszy5dimq4p39x3gwiywx7jdjlzgwcv44q"; depends=[httr igraph jsonlite plyr tidyr]; }; + nem = derive2 { name="nem"; version="2.55.0"; sha256="0y0yp1bq3ixkxdqjx4lbx5h1yfx2vsia2zpqnjjvp9hzqjddvvbl"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; + netReg = derive2 { name="netReg"; version="1.5.0"; sha256="15dzz0068s38rxp0vjz9ssa09575xw5nggxl86r2zxcmb93x3yng"; depends=[Rcpp RcppArmadillo]; }; + netSmooth = derive2 { name="netSmooth"; version="1.1.0"; sha256="1d2mpc9n32aah9dnmwk2bc44c9nq006i4xj79hg7z6cvsxkh67cb"; depends=[cluster clusterExperiment data_table entropy Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netbenchmark = derive2 { name="netbenchmark"; version="1.13.0"; sha256="0ssagk6gwdbrqwc037y05xjbnaiv7k5mq8rmwmx6y3d74jwwpb3d"; depends=[c3net corpcor fdrtool GeneNet GENIE3 grndata Matrix minet PCIT pracma Rcpp]; }; + netbiov = derive2 { name="netbiov"; version="1.15.0"; sha256="1njiy14g8pf4yps4npwsm4x883qgixwvv0f3p2pb69p9r4kg0phy"; depends=[igraph]; }; + nethet = derive2 { name="nethet"; version="1.13.0"; sha256="0kvwwcwm4hx1r3f24s84pw19vms0aj0bacd79c3r7z26mlmzw7zh"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; + netprioR = derive2 { name="netprioR"; version="1.7.0"; sha256="076b72g6b9k2zz277i6whjw49jcl6b3bmr9n652nc11d1ydwq3ic"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.41.0"; sha256="1spzd74z279rvpw0vpw3bw19gimhcdrcxk6hgxv1w7b0nllih606"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; + networkBMA = derive2 { name="networkBMA"; version="2.21.0"; sha256="1gax5312r6cz4s1qxxlg8k63dlk4ja8b57c2br1q0kpcdgbwhrqr"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; + nnNorm = derive2 { name="nnNorm"; version="2.45.0"; sha256="0m8zcv7kyv7ll6bw599nlihmssfizivkrfm1sqr1ndjwmc8b6blp"; depends=[marray nnet]; }; + nondetects = derive2 { name="nondetects"; version="2.11.0"; sha256="0iiwvad8cb3g2a7701vci7g2qkvhc43arw4cw7zpmg46qk6yhvv0"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.9.0"; sha256="01j9gp2d7b8n30ckf61ywncw0il81lf6d0sfczr39bqdq2x2xyj3"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.7.1"; sha256="15ajyr38km4fph8np8r171j4f97fwyvy0jcqdbs79gdh792h12sm"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.17.0"; sha256="0fw33zgrp9wkchddagsd93ijkspi20d8p7yvsqspqrjy3yv6yq3i"; depends=[Biobase BiocGenerics GSEABase]; }; + nucleR = derive2 { name="nucleR"; version="2.13.0"; sha256="17fndr7wp7i31k3g18chm6nvqmh1di8s0l0v3kp61sn7v4qbfcc8"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.9.0"; sha256="0bn8gihg4b70gmdyvn91i5adzfbkfaqcb59kv3y56dss04ss736j"; depends=[IRanges S4Vectors]; }; + occugene = derive2 { name="occugene"; version="1.41.0"; sha256="13dqbp1kaan56xqlgfdqrld0l3qwky6487mf9j0g7788yxwl1fnm"; depends=[]; }; + odseq = derive2 { name="odseq"; version="1.9.0"; sha256="0yyg4y77ch7x0f6xa10wnz8kydc2pjrrpbvdc448388acmmbpdbl"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.45.0"; sha256="1w36wqry07ml048q55xnckb2mldv4llivsc72b9j5vhn54776n9d"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.43.1"; sha256="14h79m2pq7a5472xh9rvbn5dfr07nczx0iz8g7jc7sji10jp83nd"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.3.0"; sha256="1x18vkfn1m8cwzwdg9lvpbmiprgpy3hs4x9h6jwqavgdnpq8lv60"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma omicade4 PMA SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.21.0"; sha256="055jnv8m9fhj2hixbc997mqv56p07azg40k8qb91mdc8fidypka6"; depends=[ade4 made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.1.2"; sha256="0myr943y0dvpyh75sjc41cj9i77psmy7j60vl3y4daqd9vbgpkws"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.1.0"; sha256="0zsx8zabz07jyfl1xj28ak6k69jfrrig38psl7qny82ydz8bnbas"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + oncomix = derive2 { name="oncomix"; version="1.3.0"; sha256="0rpwkksxakhwhqvir646gj0x8b1nqsnc2cvjzvh0mlxvv4zmmc0n"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.3.0"; sha256="1krimcp6p2m6ls7vkkyfpacjxmg8fa1shwjw5cl2nvcgbn391k15"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + onlineFDR = derive2 { name="onlineFDR"; version="0.99.7"; sha256="18naq5jfds1njalqqsi6b1hs2sld55flnv63s8yk2cnhpjcfyq47"; depends=[]; }; + ontoProc = derive2 { name="ontoProc"; version="1.3.1"; sha256="0hh9rha7b5y3hnahmk1mkmwi22bdrjnm6r7fym2lpgdaihs3b43z"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; }; + openCyto = derive2 { name="openCyto"; version="1.19.1"; sha256="1i8n1yzrnmbl0h6ykqj9hl30nml8nvlvz4b975w1jh5sp21x0gcv"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.3.0"; sha256="0sq1f9ir2n9rrxa10cjwfsk1rwmi0aryd31z9zb9i5hciinv99gy"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.3.0"; sha256="08ysqxf6dl5rsbxgfv6z9llxclmqn2gwf775r3py0x49sx4ra2hn"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="1.19.1"; sha256="16rnwlay7m6y4cf9333bq7zwnp5lcy1i1p23zl0mcvzlb9mam4j1"; depends=[ape arules Biobase biomaRt fastICA fdrtool igraph pixmap scatterplot3d som tsne]; }; + oppar = derive2 { name="oppar"; version="1.9.0"; sha256="0j26hqskvfv8qb13kmi4dcg3ylzxgwxl4xn4chvi5k8svli4r2qw"; depends=[Biobase GSEABase GSVA]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="1.15.0"; sha256="0vrpylrnl02abj6akcp0fb06fk18k42xv78g5f4cyy2jqdgqgijq"; depends=[Biobase dplyr DT ggplot2 MSnbase scales shiny]; }; + paircompviz = derive2 { name="paircompviz"; version="1.19.0"; sha256="1glli54k00gpm04p177hwgsdq352ypc7r8swbksk18j8xghk8cq4"; depends=[Rgraphviz]; }; + pandaR = derive2 { name="pandaR"; version="1.13.0"; sha256="13mv40jsclngfzcapscw0wxv67dd2ym4kkpcvy2v03z37ak3n1fk"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.3.0"; sha256="17d8ms86xvhqprwazi3cnv3sxyaxmammkf3dczka78i0dwl0p0df"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.51.0"; sha256="1yrxsjc0r9z0nfgbc9n9p5mhqhyx7x76v7vcjah6hdv4svi78csc"; depends=[affy Biobase]; }; + parglms = derive2 { name="parglms"; version="1.13.3"; sha256="0x8j7ffz8h7303n90v27wcb71x75m7j1rq4yz59iv9fpis16yj27"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.39.0"; sha256="0lkv6csikcm2jw70gz3bkzjzj48w8dlx1gfc0sh5l49q2szn3fha"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.49.0"; sha256="1ln36h3jy35398r92i5hm4qvcjfsmc0frpy4dpgi75ab1wgjzb1s"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.11.2"; sha256="1v0pia06qx995b9y4vllp844f5846877zyl587xz5026mnbr5p5l"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.19.0"; sha256="0sazl4wi6pivvr2r098parc8j68hq8apfjb0nk6vicfisx0dqk1h"; depends=[princurve R_oo]; }; + pathprint = derive2 { name="pathprint"; version="1.11.3"; sha256="14x9i2gkra49aqnpi0xd94430nl05sw3yr85ramaxrzavm7lxvsf"; depends=[]; }; + pathview = derive2 { name="pathview"; version="1.21.0"; sha256="0s8mq51gknca91qgy4q7fmgm4ga251w214f3zapc7zlxykb2qrys"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.15.0"; sha256="1fr6w5jbhj5rdsb53cafzsdn23b2rfcyyi6ivcfvn408x59cg3fg"; depends=[data_table httr igraph jsonlite plyr R_utils rJava rjson XML]; }; + pbcmc = derive2 { name="pbcmc"; version="1.9.0"; sha256="1hxhpxixl5jfpiqpwqvkfcnp2k7sw43asc5ikj6qpl4p5xrrfn0d"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.7.0"; sha256="138a6qrg0cqq5n5565i5y4fzlbk79hjk11ziz8hh2dxbymv1h9mq"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.25.0"; sha256="10c08lawhg1p7jydk2bb5z6rjn7pjrfr069s06syababq75j1pnw"; depends=[AnnotationDbi Biostrings ellipse]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.73.0"; sha256="0k079s8fwqhwk5hmbl0rqi52nav2dzbbsilnn2a2x92c2rzfiqc0"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcot2 = derive2 { name="pcot2"; version="1.49.0"; sha256="0ffg35602h7k904dq47sgnfyky041alnypaf3gvx7m6f8yszq46c"; depends=[amap Biobase]; }; + pcxn = derive2 { name="pcxn"; version="2.3.0"; sha256="1d7maq8vbxcs1bvz4qlc29583nbfq6jpan0gsqday51xj7ngqbcs"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.45.0"; sha256="15whr6rjdf75z6wg9k8zsyvfn08vidimzx2rw6ki1zmbh0fz8in6"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepStat = derive2 { name="pepStat"; version="1.15.0"; sha256="08dpwiphw9s8dafy4m946jxi1jfyc3lzzdg4h0ax7d6knzq0za73"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.15.0"; sha256="1bwp82zvg65yrhlx1xk2jci9fqsgc83h1x7124ci2afzlvx56ms5"; depends=[XML]; }; + perturbatr = derive2 { name="perturbatr"; version="1.1.0"; sha256="0cwk2f0bm9vlgdngb9blcpcwg2gl8ik0rdx0a6i36qzdd256qk91"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; + pgca = derive2 { name="pgca"; version="1.5.0"; sha256="1scxcrfs8b0rw38c0v569dnq2b5viqvm3ckjwm1gzqgxcjy6r324"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.1.2"; sha256="1g4q9ff11i7xfw29g9mqwqvr1py4mwwddd0yr1dhw92abbc5w2z4"; depends=[assertthat Biobase fgsea GEOquery ggplot2 htmltools httpuv httr jsonlite limma opencpu protolite rhdf5 Rook stringr svglite]; }; + phenoTest = derive2 { name="phenoTest"; version="1.29.0"; sha256="10mw83ivb99ipndjjc5r69wpsanfvzx01bfpzhq5pygjzhl6m8jb"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; + phenopath = derive2 { name="phenopath"; version="1.5.0"; sha256="05a1d7apyhg4d4nahl97i0794fji6dnnd454wfww89adjx68nfnc"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.7.0"; sha256="165k6cnj08lpkw66zljiqqwfy1knd2n46mg734d0fiy72j2va4z2"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.5.0"; sha256="0m9lgg1wcyy3ppxvmkgdv5ccz48j5mw1fsxg21vw08hpm6fm9y60"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.25.0"; sha256="1344gil3dsnvy92fsp91wvh6j1rd7xzjjapmjkvdz5rjs5rh0kd2"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="1.21.0"; sha256="1d7gld59bryzcvnvl6x8wx3v1wji58rs4zszsqpyz73qmw8ikw0d"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; }; + pickgene = derive2 { name="pickgene"; version="1.53.0"; sha256="1nklcgm3wryljq22hc3fcja6x2kwa9bilp76gzhy8zpj8swwjszl"; depends=[MASS]; }; + pint = derive2 { name="pint"; version="1.31.0"; sha256="10kwlp947h03w8xqcs9qcyp21wvx60sl47k2cnbrdhva3wf35vp3"; depends=[dmt Matrix mvtnorm]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.47.1"; sha256="08wc5qklyddz5p237q75dipvykiksdr17xcd2qkfzj3138wfkgvy"; depends=[graph RBGL]; }; + plateCore = derive2 { name="plateCore"; version="1.39.0"; sha256="0vf42ms3vky8n2n7x16kc284252zifjmch32lsww0lmsxv0h857n"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; + plethy = derive2 { name="plethy"; version="1.19.0"; sha256="05v123qrpasl11kivp1p2ib0v638yi4y19gk4df8mfald95nxcmn"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.53.0"; sha256="04hwkr3v126mildi76jfr5b8s8lly9z60iydh5i3dc5zsyd6h84f"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.51.0"; sha256="1m7bwaypnaw7kk756k0wl6xi3s0j9awi986lpa8ncjv587q0442h"; depends=[affy Biobase]; }; + plrs = derive2 { name="plrs"; version="1.21.0"; sha256="18k3xad3gmkw74klyvqzbvnlr1pq93is6dqxm2bxb4cmzar12f6k"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; + plw = derive2 { name="plw"; version="1.41.0"; sha256="0q9dwj7rznhdj1h34ygnw0snfswnr8ycx0927jzsiiycz31n8z0f"; depends=[affy MASS]; }; + plyranges = derive2 { name="plyranges"; version="1.1.8"; sha256="10p0i8q229gy0z3fg90m3xaib32v9w1zxcmn3gb87ipz9mic8ykk"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyr tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.13.0"; sha256="0p0xnkz6hgnpvai7947861kw5hmjwwf3zj2y423whdr7x2lpdayw"; depends=[lme4]; }; + podkat = derive2 { name="podkat"; version="1.13.0"; sha256="1h297id3gxix06xmhqkl1lc5gfp4vi8jkfh2gpld4bw233fvi6h5"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.1.0"; sha256="1135bxxhamcxs5hn6hq43hc7s7cr9v0jy2884dz7f9qvgnrqhymi"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.17.0"; sha256="0dz73jsyx3yivpmxz7p1q14i2rvj388bq53d7w1mz3ixrqilzgz2"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.1.1"; sha256="0427r8qwy8j3z2mpvka2b6y2k39nwiy86gb06njs6m19f597936v"; depends=[cubature evmix magrittr purrr tcR truncdist VGAM]; }; + ppiStats = derive2 { name="ppiStats"; version="1.47.0"; sha256="0prrs1g99g55i993689c6s497crijnl96z2qzgga1y9w4zbf6g88"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; + pqsfinder = derive2 { name="pqsfinder"; version="1.9.0"; sha256="1igg500dvwq1lvxyl0c8fcdkgpmxzsxcd6c24pz0dhjqsaxml2as"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + prada = derive2 { name="prada"; version="1.57.0"; sha256="0isj6w4lzfsqwwzs3njddabn2xznjqhp0bbihwfvc31kiya9k8di"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; + prebs = derive2 { name="prebs"; version="1.21.0"; sha256="0q5ibq492jw8axp50qijn0fsa5qxarxnlxz4s8hv3ql6rjlsiw8v"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + predictionet = derive2 { name="predictionet"; version="1.27.0"; sha256="0ls88pw7k1vy3qjzl91dj6kfbkgvz67448zhj1b3g308b33qasqk"; depends=[catnet igraph MASS penalized RBGL]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.43.0"; sha256="13859ip42jk6j6ngs8bwkzfarrqzd0jzhq9kdgsnicl9kf9k9vj6"; depends=[]; }; + proBAMr = derive2 { name="proBAMr"; version="1.15.0"; sha256="1cl1ns7m1d1n3ayhga7f45xrjx9cy2a8l9xs2z7x3074kx8h8xxg"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proFIA = derive2 { name="proFIA"; version="1.7.0"; sha256="1qx79xamr77rjdfr50ms0dzrmwqwc2fzd24k2njbknxvz8kay5is"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; + procoil = derive2 { name="procoil"; version="2.9.0"; sha256="048wkmsidcw31mqjli2vspkf332ddx74dd709xbw5bkggw5l5a0b"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.9.0"; sha256="1jv9szg451ljggx458sgcgiaf1p6i7sin62lhbh6b8jn1s4h7qrw"; depends=[BiocGenerics Rcpp]; }; + progeny = derive2 { name="progeny"; version="1.3.0"; sha256="0rini10n59yzyq7bzckbyxvvl2lgj35k4dzm72lx47cws8nlqyl0"; depends=[Biobase]; }; + prot2D = derive2 { name="prot2D"; version="1.19.0"; sha256="1aawirq8plgdrz88yzzqh3p1m8y17ygf2l3a433lzrm3ffz6y3qx"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.21.0"; sha256="0zvgf4zmx42idyy8c6zfmf4gv22gxpyw1bs8285d9bfjk7qpvgwc"; depends=[]; }; + proteoQC = derive2 { name="proteoQC"; version="1.17.0"; sha256="17a6wmkxr8jfb7nbwykfc562fgj4p8addq5idajag2ijaiycvzz5"; depends=[dplyr ggplot2 MSnbase Nozzle_R1 plotly plyr reshape2 rmarkdown rpx rTANDEM seqinr tidyr VennDiagram XML]; }; + psichomics = derive2 { name="psichomics"; version="1.7.0"; sha256="0vj20pw305p4i08s7kxj0np1xxi8mhdlasagypc76ysnlhq0w6bn"; depends=[AnnotationHub cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma miscTools pairsD3 plyr R_utils Rcpp shiny shinyBS shinyjs stringr survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.13.0"; sha256="0hpipknbcg3ic6sr19ksy1zs71h2kk3p1bvvhqy4xirajzqf3z41"; depends=[BgeeDB Biobase BiocInstaller biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + puma = derive2 { name="puma"; version="3.23.0"; sha256="1h299ach0bff17az4vfa7dbb9x8z3b32mfmg322afpmfvj3xdqa7"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.29.0"; sha256="0ax1pndxw4knhas0cp54b9gyr3xjl6rriyif1sccmqrszswkdv06"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.21.0"; sha256="0ayi9f2zd5f3c96w8kfb68nmd6idbg1l19h0ys1zdjgzz1dkqqc2"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.13.0"; sha256="0y4jsybxd6bcv9hqa25zij5lsbh55790njdy0p383pywbsn2dwvs"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="0.99.9"; sha256="0kaa1y5m150b3c6chpkadcj5l446kjq2hhvwf17n1gn58gzmbalv"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.19.0"; sha256="1m2q9lhvk9yicsn5anw88hvs3jg7wqfm9vhm1g43hbgjbqy4jzqj"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.39.0"; sha256="18h58d58c0hs804n0xzsn0ydp4xw5cvab447zxq50g4adajjf7r8"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.15.0"; sha256="1q6lrhxq4zra6x3wx3ikc70np8yqz8b6hzgdiy4fxx6b4kjcpnd3"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.35.0"; sha256="1mcb7gpncr91lq95vmbf6skjm5hxqlzx25inac3zwj3j4q07ipnk"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; + qsea = derive2 { name="qsea"; version="1.7.3"; sha256="11icpr1x374r77kn7fdlys37m8q6xi7g84gnn6m0wdx7srla3aal"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; + quantro = derive2 { name="quantro"; version="1.15.0"; sha256="1r9q1kmql8fgdnljgb17simjkfdm14nn0fxmrh09ijg8640bdis4"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.47.0"; sha256="1w2gwaxy90s6laghgdhxqb0c0s93ci8g61zbrn7xjpd6af1vz1md"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.15.0"; sha256="025xjbaw1mkvh0wa656l851f1c2m4sjxqb6xvjks3fz4bwlrk2xr"; depends=[Biobase limma lsmeans nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.13.0"; sha256="1g6lfgn73z68imy6qmh9s1zyniaq1wyx8jyllrk4lxpgk17i5dgh"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.27.0"; sha256="13cswnxp8ikv95xb3szn7br7xm5ml3mpj365vxhaky2s1x9kxr9p"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.21.0"; sha256="0bgxw31ivqmzykxhrnzrswf39kxp7sj9kpi4fz8pxggjwnb59pfl"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.11.2"; sha256="10284xrdqh0pbn8a3ibwr2znf3lajnimli93lrhs4d60cna8wp9n"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.7.0"; sha256="12c3ly2x1wc9ry514vzks20drv8q1r19sflhpnwhbc00lmh13s1k"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.29.0"; sha256="1bqzmawhz1m00zcbnvznxzvak5f1b65xalr7sgas2sbrd77lvrhr"; depends=[Biostrings BSgenome IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="1.13.2"; sha256="18cfmvcmk60shrg2pd2qwi1s5679sbrv846vac2py29f6c7gq5zl"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; + rHVDM = derive2 { name="rHVDM"; version="1.47.0"; sha256="1y8dkws06j7jh6rnlq3y91bn5wy8fn2ha224mmvx4qchp6y9xcxd"; depends=[affy Biobase minpack_lm R2HTML]; }; + rMAT = derive2 { name="rMAT"; version="3.31.0"; sha256="0d2hn2jjs6c5xjwf6w0m9v53bb9mfpqvmms5vnzhwh6z3jankavm"; depends=[affxparser Biobase BiocGenerics IRanges]; }; + rRDP = derive2 { name="rRDP"; version="1.15.1"; sha256="0m00070c87za48a4in8bqzb3l77177jqys2ya6wv6xylmfig899j"; depends=[Biostrings]; }; + rSFFreader = derive2 { name="rSFFreader"; version="0.29.0"; sha256="1302ln1sshljannk1wkig4hf4cr5zk98z091jvbgs8icfg7k12by"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; + rTANDEM = derive2 { name="rTANDEM"; version="1.21.0"; sha256="1n7yaycgh5822j119si8i66yn0asg1mz9a9g7idiyvj8gpq54fv5"; depends=[data_table Rcpp XML]; }; + rTRM = derive2 { name="rTRM"; version="1.19.0"; sha256="1x8gbrn4b80v52isxg8a5rhkwijnlx649xyipnj206ky6ihzd3hc"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.19.0"; sha256="0gw5yx609nzk8r8qc7q9zgkfs32s79d8v1zpw2njcb5d6figs7b1"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.1.0"; sha256="0vcqrcg90npn3rmwkywnf0qnjwxw491mn0xrski70yyij2lylckg"; depends=[caTools httr RJSONIO]; }; + rain = derive2 { name="rain"; version="1.15.0"; sha256="0zrxh7bmc9x9rh6zbb0zmv3nvz6l7hqq21h4gh3rzzyjy79vw3aj"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.55.0"; sha256="0kmp25yw86vqxf43br2j75svvaprz97s5nvnxxjxbjwiigbjla7h"; depends=[]; }; + ramwas = derive2 { name="ramwas"; version="1.5.0"; sha256="0g794y9xawkrfcylasjjv123rlsz1yfrdl89nrr4i99jfw7innw2"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.27.0"; sha256="0s7460iz01vmkf4a8g3vn6hrfx94bp5mihfyjkcv46nd9p3k6af5"; depends=[Biobase]; }; + rbsurv = derive2 { name="rbsurv"; version="2.39.0"; sha256="08lh9hn97sc0rx9vmkd977kpijs6gqa6r89my7afsvmkm8v7n7ls"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.3.0"; sha256="0rm5azbpyfsdaqxmip7wyw8f5apwac8s6n6cm0sqdwwsslm5dsl4"; depends=[Biobase fingerprint ggplot2 gplots rcdk rcellminerData shiny stringr]; }; + readat = derive2 { name="readat"; version="1.7.0"; sha256="186hx7r5gvybvp1f6yzpi515b7hsv3a6il02hwpr8y1xdx3408nv"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; }; + reb = derive2 { name="reb"; version="1.59.0"; sha256="0sdlhx64sh55waxj47hz9kfb6bvxrw4ycyzj5cycr1w3sk2idszc"; depends=[Biobase idiogram]; }; + recount = derive2 { name="recount"; version="1.7.2"; sha256="17cymdrkr9aiszv98qfsy7das1ain2g0g8q4f8ik7bk868ahsaj2"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recoup = derive2 { name="recoup"; version="1.9.0"; sha256="0z13mj7b5hywp5mbk0faq01k7d1mpnz2b9633h75hkh04w5260n9"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; + regionReport = derive2 { name="regionReport"; version="1.15.1"; sha256="12mbpblgg0lf3kixi1isx92jkxxcnifhwq03ipgigrkd0iv9s7q6"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.13.0"; sha256="0iy118hy66d7wina49sh7xwi0akx9hp7k98gwfjc0bpwdj7gs1h9"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regsplice = derive2 { name="regsplice"; version="1.7.0"; sha256="1gl5isfrqi0xyb4mdv7j6sb8ah4mzmwkaal1kcphjsrj8g46ba80"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + restfulSE = derive2 { name="restfulSE"; version="1.3.1"; sha256="02jq9gjf7z70ny1bmywx39igxm29nkmc6qv1acy81gxxpsr8naih"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + rfPred = derive2 { name="rfPred"; version="1.19.0"; sha256="0xnb68s8iw01cnxma5iqyfki4f30i4if7kxc9p0i8w1nv3jf28xj"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; + rgsepd = derive2 { name="rgsepd"; version="1.13.0"; sha256="128dqx7qzs9pf7ffxn94g8krkyryhcvj4wq9m1mdfj024yl4s04i"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.25.4"; sha256="129jzsqfswv6vhvfypqm9wcsnm94blq2zmjcp78c1vcjxc2i4li6"; depends=[Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.3.3"; sha256="0iyhqsnfr7c9z7zk80i6i15f7sqkb28nakjxccldhn0g8xkaavq9"; depends=[DelayedArray httr rjson S4Vectors]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.15.0"; sha256="0cwf51cish38slfv3cqfn4rqjs8k9wwwph0n4w7wd4dh7c9p2rmn"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; + rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.39.0"; sha256="07q9dblld6ns943ppjdl1xlbzhg3yvxci8v1x2kbifqwlvv2lzs6"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.11.0"; sha256="0r1n74x5xbp264ap9xsndiich89cv2140whi6ax179dpjs57ikaa"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.17.0"; sha256="09wmsfn4lqzj8ffqlf5z9npx4v0y3bpvxrm6b5rggc3prlq9m4qb"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.9.1"; sha256="0lzwl32zd61cj57ndxs9y74bclfpwl7s590a81cj99kidz6sx0c3"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.13.6"; sha256="1gbjnpm5phimfgg2qfav04wc4aabvinj8gxirw9f6gp1wra0kbyr"; depends=[Biobase]; }; + rpx = derive2 { name="rpx"; version="1.17.0"; sha256="0h5s2dwnpn7qqk5wk7128agdh9av9jzxhix4xrl0nhdd3jzi202y"; depends=[RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.7.0"; sha256="1iai2g1k7ybdlmw4r9k2zqdqq58ayggzs0gzdrn1bxmgp83v87fv"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.27.0"; sha256="06pp8ha9va9hkr5s7dmw6xsxs55sv0cn9vwysja0n4hdbbh5fx9v"; depends=[biclust Biobase BiocGenerics]; }; + rsbml = derive2 { name="rsbml"; version="2.39.0"; sha256="0ch87r9v7yxxqab81n99silsi6am7vwf1fzg43jg8x5726yz4pip"; depends=[BiocGenerics graph]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.41.3"; sha256="1z8g303smfg3c3rax3c9fx4017fy9ch5sbvqsiincykigjsrn21b"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.3.1"; sha256="1l1rywk4lhgssmysd8998gd1wr5ms08s2s8skq2ss6qcxp1qrnvi"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRAP = derive2 { name="sRAP"; version="1.21.0"; sha256="1mfailybmpa5ikc372qcfp57rnsksv6kn4x48bf6c0g5vln2kpjh"; depends=[gplots pls qvalue ROCR WriteXLS]; }; + sSeq = derive2 { name="sSeq"; version="1.19.0"; sha256="19d7xj3bqvvlxl23i08ab8ja53342nzi658a1f7xzf7khgp58fg9"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.21.0"; sha256="12h9d3dradnnkmhxz94d1b191q6xvx74nvp9y9y46yla7rxqpzma"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.51.0"; sha256="0mvj275rrqvz53fsv48c5gd3lzxmwh036353bmw7jswb1mrrv5qz"; depends=[SparseM]; }; + samExploreR = derive2 { name="samExploreR"; version="1.5.0"; sha256="1gnlrkvyzw36m3da67vz7g8cfrrk4lg0yg2b9svhf3rjhfq6sjvv"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.5.0"; sha256="08lr8b0dg489mfiljnpqdryflim8m902b66fl8qkkn5hm842dm22"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.17.0"; sha256="02v0khp8dksvj8h0p3py5cdxwgbla9hv60mrj6ay2d6yyv2w0vz6"; depends=[Biostrings shiny]; }; + sapFinder = derive2 { name="sapFinder"; version="1.19.0"; sha256="0f0k3afijnj0h6bh46cnkm3gajdsvngamcw2q5xbdrafidrk6npm"; depends=[pheatmap Rcpp rTANDEM]; }; + savR = derive2 { name="savR"; version="1.19.0"; sha256="1lzlrpv244pnwmf3347r7l5vwz0cd4hlm9nvlpdlvv8glvf7v4ay"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scDD = derive2 { name="scDD"; version="1.5.0"; sha256="1s2a4nz3ys4vllk9dphwskqrw2bb9shkqx4bismprn0b7qcmnv9j"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.1.0"; sha256="0d4rrrk4fdrnrf7rdqwz915sg7m81w0fzfrrnjzpsncpwzkqa1pg"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.3.7"; sha256="1gvpkcxjal81r5vh4f16ll9p0nj70iyp8gp5c9rkg2pr0p28ryx3"; depends=[AnnotationDbi BiocGenerics biomaRt GGally ggplot2 MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase S4Vectors scales SingleCellExperiment SummarizedExperiment testthat zlibbioc]; }; + scater = derive2 { name="scater"; version="1.9.6"; sha256="0yxw73fvxyvq99lnpwp4j4mf2jy6zkyw934ql2y2avbnyclj4id5"; depends=[beachmat Biobase BiocGenerics data_table DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 limma Matrix plyr Rcpp reshape2 rhdf5 Rhdf5lib rjson S4Vectors SingleCellExperiment SummarizedExperiment tximport viridis]; }; + scde = derive2 { name="scde"; version="2.9.0"; sha256="1zmhbjdy9v2v11q261l7gwjm77qpiyqdskgbkcaxf7a65wbzs90r"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scfind = derive2 { name="scfind"; version="1.3.0"; sha256="08xkvmjd6p6vsnfk7a5y4586b9r3ap7l9ig0g6cd6cj8pjhvf51b"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; }; + scmap = derive2 { name="scmap"; version="1.3.0"; sha256="0pnflc49ysq7sxcg0ddcapi65vfjq3zl9pnz119hjr6avp8sjmhy"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.5.0"; sha256="0n49j4z48zfrrj7a9nv538vyi5611w5r68rw9w99c28k2n6lvril"; depends=[BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.3.1"; sha256="1nysi4blc9rxfsq4kwyyq9nbzdww7xfwgrcw8czvnfca59dbfgdq"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scran = derive2 { name="scran"; version="1.9.10"; sha256="1c55i0iq6dfhxdmnps440d0i1lsidj2wx0v2a476lks4hi32bwsf"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph kmknn limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; }; + scsR = derive2 { name="scsR"; version="1.17.0"; sha256="1ppw53nl05rfs7jkgr464pa24yrczlvh7yfgmn5apd3yxbmf9i9w"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.15.0"; sha256="07cm7314vjhsara5ngs3j0gi7fjbdvn51r6s7ifxm6vij43ivpqs"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + semisup = derive2 { name="semisup"; version="1.5.1"; sha256="170x6s5q1lja64p4ldpravlaal8vs7rzqk8lyvrydsg02ss7vj7h"; depends=[SummarizedExperiment VGAM]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.13.0"; sha256="03gbim70cnym2ga6zynj67r9ad1j4hrgydzzsi8r1nykkmjlk5lj"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqCAT = derive2 { name="seqCAT"; version="1.3.3"; sha256="0s3r550w41x5kdzqjnk2ypp2fn3sd8qn8b85s4h8rdzyc8brp0d8"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.27.0"; sha256="03zxkdcvxgjjhciv1w9l9gdj21ljqrw3c9cgkf2pqp3jk0swpaa7"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.47.0"; sha256="1hqfgxd7yvh7lm5q3qfhlkiy0pq5ffxls317miivsgid28shwmwk"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.13.0"; sha256="1xm7f3z29ahyiiy8586yfy5m4cqalws8hsyp8yc9xybw0mwdpyhg"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.15.0"; sha256="0qnj79xhgflhjcrd2n61fmx099q83iil8hy6pq7jzhnzhg4572pj"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.29.0"; sha256="1lv6wcqzlr40jmwac9s07ixx9vyikkc5a8f5wjmip9gglyy7m5f4"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; + seqcombo = derive2 { name="seqcombo"; version="1.3.0"; sha256="1l4n2472kr4kimf4aq8v5whqwjpzwbkisfrf74wjljdj43903dr2"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr rvcheck]; }; + seqplots = derive2 { name="seqplots"; version="1.19.0"; sha256="1qx7b2jzhprncgff4n88w7kq10hp98a6bcky0lq4z8rjf3ksaph7"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.1.2"; sha256="0az4s9v69b57fnisc5ln827da7cyhx16wwzh5cx8qqhkffzn323s"; depends=[data_table eulerr GenomicRanges ggplot2 IRanges limma png RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + sesame = derive2 { name="sesame"; version="0.99.3"; sha256="1dz1jx4cmpbis0h3mmk5p7h6ybprsrnvdbzcv6kj0h0q31al2rg9"; depends=[DNAcopy GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore R6 randomForest sesameData wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.1.0"; sha256="05h05y7nkq73igsv54znawrzav7ijvrzwqsbpw8di43fah1klpg7"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.11.0"; sha256="1c3mj8k5fscj4hcg7rm12zjfp9hbwlp9k83hi8ijq55iw66jp399"; depends=[curl docopt dplyr httr jsonlite miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.17.0"; sha256="0cs3s08mijpcz598d07as3yl0fcw3x5q6q1lxmq29x36kmfz6yrg"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.19.0"; sha256="0yvf4rxpki7xb7f7yckxrm7ycsx2clqn13smc2m7ihdyvg5kw941"; depends=[mixtools rTANDEM shiny xtable]; }; + sigFeature = derive2 { name="sigFeature"; version="0.99.4"; sha256="011drdrq1pj37jbp8289rws1nmhbyivghbfpkirj6g4wc6pnpghn"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + sigPathway = derive2 { name="sigPathway"; version="1.49.0"; sha256="0fzqf17xqb0f2af9lz392l656naddann4wsxn233d28dajdvw5rx"; depends=[]; }; + sigaR = derive2 { name="sigaR"; version="1.29.0"; sha256="0lmv6m0rb7pnrqp6gd8klni3vd0rb98xscfx7qb5xpkihqcnya9s"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; }; + siggenes = derive2 { name="siggenes"; version="1.55.0"; sha256="1lfw6ny0s76jcypqin49raz1zrbl1rwds3646c8h52rd37c4hdx0"; depends=[Biobase multtest]; }; + sights = derive2 { name="sights"; version="1.7.0"; sha256="0ygld23zpqqa7xalbq1kyf6x03kpqbmicr4hrysjk54h3r5pv56y"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signeR = derive2 { name="signeR"; version="1.7.1"; sha256="1xmz6b33n0idby69739mm8frv4l95g8rsdcp98dg6fhpf2s49ky3"; depends=[BiocGenerics Biostrings class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; + signet = derive2 { name="signet"; version="1.1.0"; sha256="1rdmq4x0xf13hl54f2nbnckz8nci9391g6l00zznv1vzykp6awdm"; depends=[graph igraph RBGL]; }; + sigsquared = derive2 { name="sigsquared"; version="1.13.0"; sha256="11bjd0bq2kf4inkybx7hkf970ma8rhwvagrlwxnxafh8nzw5amn8"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.13.0"; sha256="1lgs161banaxsi22ydgmw1jpf04h7js92sqzir5v7ms0h12nym15"; depends=[R6]; }; + simpleaffy = derive2 { name="simpleaffy"; version="2.57.0"; sha256="0yc44svjmh2vr1z3a77nvmas7kfcl0p6rjygq6ax477rvzldw7rq"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; + simulatorZ = derive2 { name="simulatorZ"; version="1.15.0"; sha256="1x90bakarcp01h72536yr0ks2w3a64l0lwvdvka8whwm72sh8255"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; + sincell = derive2 { name="sincell"; version="1.13.0"; sha256="0mqm5qrb5nrcpigpvkjvhs0fh386x9lm6p5ns1vl38gvdq9yqvi3"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + singleCellTK = derive2 { name="singleCellTK"; version="1.1.5"; sha256="180klrpaq8dz484xpd76aif2n5jyqxi4l0lr969v0yby9hn9jvyq"; depends=[AnnotationDbi ape Biobase circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinyjs SingleCellExperiment SummarizedExperiment sva]; }; + singscore = derive2 { name="singscore"; version="1.1.0"; sha256="1n21cikl874xhbx2c0nd678p53s6gvavih3dz2cbm1l1mprn5gx1"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel ggsci GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape SummarizedExperiment tidyr]; }; + sizepower = derive2 { name="sizepower"; version="1.51.0"; sha256="0g0f5z0ccypk7m81b2nhrrj86fv1fin96qm8wba2j6ib2wf0p4np"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.13.1"; sha256="0kgs9xf1609y0na5d9lrl6gj3rrpraagbhnhh9iq3p5b0r1ad92m"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.3.0"; sha256="0b68dq85h3rq0q4lbiv7zv4wg1prf79kh96m06hg9dp6336wy60w"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="0.99.8"; sha256="0yafvan6py8m4xnhx89hipzv4kbyviivxgn07mp74falci5f9mxw"; depends=[ape clusterExperiment igraph matrixStats princurve rgl SingleCellExperiment SummarizedExperiment]; }; + slinky = derive2 { name="slinky"; version="0.99.18"; sha256="09074wzn1534x76fczfcj6jl94vgv33yq3vhzsv1m342kwqn3mi5"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; + snapCGH = derive2 { name="snapCGH"; version="1.51.0"; sha256="0qfkc3sa8inlnviw5wx36nyy71b59xas9rqsmfb4j32nxdhqj64p"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snm = derive2 { name="snm"; version="1.29.0"; sha256="052mayih2hdgsgklqhvzmvnvx82ch8q4jvpx8ch5rp4k4g0qlqyj"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.31.0"; sha256="1pxdf5qnibp6szwsllcayqxm9164yl30awfizlv6jmphfkah2i35"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.13.0"; sha256="1xg6yaprmafl861g66j5pymlg1hpjanyibyi3zkrd15avvxw23g9"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.5.0"; sha256="15vpj6v1x84zfy7vblhkm1vsv8hp5qa0fhfgfxbnzc5v28g1g41h"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + specL = derive2 { name="specL"; version="1.15.0"; sha256="1xdfsvq7i9g2pbr0fh0awdwvl3j5ggk1r0n5bxhq7s2p4kjppxc6"; depends=[DBI protViz RSQLite seqinr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.41.0"; sha256="1wx57idxn0wbg9mcfxdydcs5fbxmarsvv4hjcp62r5dpp4ymhcsb"; depends=[]; }; + spkTools = derive2 { name="spkTools"; version="1.37.0"; sha256="12nwaifk726dr0lh6yf8xaxdmhlybiy88fwc1qypm3kvw6jff6ma"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.5.1"; sha256="0anp2ipvagv2vfhnk0yzldmn9s1z3liqmmqrs23s1yfi9dasdgbs"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; }; + spliceSites = derive2 { name="spliceSites"; version="1.29.0"; sha256="1ivw3zsy5jggacvcby2nx9g9h0r1vvj331qpxxnvzajp9j0187yq"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; }; + splicegear = derive2 { name="splicegear"; version="1.53.0"; sha256="15bc3wmz3rz2jipgfj51bj2shr5cy941vnzxnk277yzh5wvz9hvc"; depends=[annotate Biobase XML]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.9.0"; sha256="114c641vyi585yl11czkq5n8gl01q6h8q34g427sj7aspqpf8lkc"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.47.0"; sha256="18yb8ifayd8cjs7najls4bzw0z3s9pyyid54vhcg1ll6860crymw"; depends=[RColorBrewer]; }; + spotSegmentation = derive2 { name="spotSegmentation"; version="1.55.0"; sha256="16zbzf05pg39vs6k1yvdsi880vfa3im4bq7rvyg8fvffb07pxr5l"; depends=[mclust]; }; + srnadiff = derive2 { name="srnadiff"; version="1.1.0"; sha256="1zn43lad3q5cvajr5zw07rcd1q95528xr3kcvr0b0j2c2wqd9q5v"; depends=[BiocParallel BiocStyle DESeq2 devtools GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + sscore = derive2 { name="sscore"; version="1.53.0"; sha256="0p6klmcl2zd4i8qmmqj043p310grjmi6b2d610wanas03f0jdv71"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.11.0"; sha256="0hnzxyyp82psjddh97kw3g533aiczkji858jl1xqi1kbr02avwc0"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.55.0"; sha256="061gpsj4dlzxii5ar3rdbc0kpvwby9639l3pk8vfslvcbl290w9f"; depends=[gdata xtable]; }; + ssviz = derive2 { name="ssviz"; version="1.15.0"; sha256="18yz1jy0rl4r7ws21kyl1rjix81jkrqbqhqxgn9qf7zsssynxjf9"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + staRank = derive2 { name="staRank"; version="1.23.0"; sha256="1gqvfbs15hdg7fkz6yxjxwn227am7lj372yhiiadgm629bwgcyxi"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.3.25"; sha256="0gq5j7an4m0npc7vx4p8csiwhsdhx9p48gfjp3gds2jjrlnrpsc0"; depends=[SummarizedExperiment]; }; + statTarget = derive2 { name="statTarget"; version="1.11.0"; sha256="06cwz5mwlc580bj2pqli08a6ia4q68d792jx0ssjhk6ggh58czqp"; depends=[gWidgets2 gWidgets2RGtk2 impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.53.0"; sha256="1iq4kv3dj8nr9nqd4nnrndss4ypc87a9pl389ha9q671ifqahaii"; depends=[marray MASS]; }; + subSeq = derive2 { name="subSeq"; version="1.11.0"; sha256="0grwj60ax5i9z3bg04wi73pq9qx5mizldc059ja23f4rkk4nq7vg"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.19.0"; sha256="0m4plhy7v0rfxr8ysndyqmd1x9nbf2y3hbka5gvs3zmi45wd4rds"; depends=[ape hexbin MASS]; }; + survcomp = derive2 { name="survcomp"; version="1.31.0"; sha256="0r95jgddlvgx61jwsjgdqb2npm4mi19jyrqw2349h3bds6w1r840"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + sva = derive2 { name="sva"; version="3.29.0"; sha256="0xrqhnayir6c3hz7yw35rlscgbv6hp0s798v5qmlgdfk4s2x1sq4"; depends=[BiocParallel genefilter limma matrixStats mgcv]; }; + swfdr = derive2 { name="swfdr"; version="1.7.0"; sha256="1bnqmz6vcj79j6cp15gla9lmsa3d96m790f5yl9vffbcj48n0rlc"; depends=[dplyr ggplot2 reshape2]; }; + switchBox = derive2 { name="switchBox"; version="1.17.0"; sha256="01bx0ij8ylk0r1hn73mq2dhf07mw8z44bw3mhrydhr8byp0rqz0c"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.7.0"; sha256="0kicwjsm5k7glcqp3q19aq2cqdyh3s6jblzp836xgygwxm1yab2m"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapter = derive2 { name="synapter"; version="2.5.1"; sha256="0nmkyza5a7lzmdpv50s7zn1gd30w4xvjlxaycg8id1n2cjzazq75"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + synergyfinder = derive2 { name="synergyfinder"; version="1.7.0"; sha256="0v76jdh7dh9hhjgxfbls529lrv1wkjvaym39s7ahm3p1njycx05d"; depends=[drc ggplot2 gplots gridBase lattice nleqslv reshape2 SpatialExtremes]; }; + synlet = derive2 { name="synlet"; version="1.11.0"; sha256="0ijhssagav4hw7nm8x5157crdv4i8yhikrk6qf9w134lkkl0mviq"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + systemPipeR = derive2 { name="systemPipeR"; version="1.15.1"; sha256="1ljvvsbwnn03czl8rckbx4rlnggh29y133k95ldj3p8vjn61f23r"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.1.1"; sha256="0b9qr0wkbdy31j1jnxi6k883avr60shx8v111ra3pjvrfnczl933"; depends=[assertive BiocGenerics Biostrings GenomeInfoDb GenomicRanges reshape2 rtracklayer S4Vectors stringr]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.19.0"; sha256="08wlv7a39m1zrk8pssmck2zmyghn19ksr9fpf03z8ypwsqghaac5"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; }; + tenXplore = derive2 { name="tenXplore"; version="1.3.0"; sha256="1x0b4gjs1igir8k8zlwc66w63gsf2ffk3vk7yas1cl3ivvvvw400"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.25.1"; sha256="01yzfiyrbkdgzzkdnn2ifa879j8pal38k8zm83d4ad9y06v8ndbm"; depends=[igraph]; }; + tigre = derive2 { name="tigre"; version="1.35.0"; sha256="0bby62hc2858pppk071fn2qrnqyjwc7fnpvg17y5ff2042mg0g02"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.59.0"; sha256="1kbw2hj4x3wizqia245kfb1x7rkd6prij7ywif8w3wcv9c8p919m"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timecourse = derive2 { name="timecourse"; version="1.53.0"; sha256="1424s2ai9mkmxxswy6i928gzkk6kk5yz59nxkz91icg39xlf0rl5"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.5.0"; sha256="0p0i3ypd4gg44l8s7yvphjwzadnnf5l6grg28wbm7miim54vvc2y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.59.0"; sha256="0nxvgfl8kmasb1i6s3sq46qz0f7sjbqlwm5hpww1856bqd8dyyld"; depends=[DynDoc widgetTools]; }; + tofsims = derive2 { name="tofsims"; version="1.9.0"; sha256="0hadp7726y0vfaz953hwpl27j8bhrdwrm66c81ic4jrpcicixvvr"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; + topGO = derive2 { name="topGO"; version="2.33.0"; sha256="1avq073grahvf92sg4jr6fg3ld5z18l1pnfsgp337m308zvss0mv"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + trackViewer = derive2 { name="trackViewer"; version="1.17.2"; sha256="0hnhcns4kblnlvdsvvs3z1cmgmjvligyw90ykgskq47navwghjmm"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; }; + tracktables = derive2 { name="tracktables"; version="1.15.0"; sha256="05glrr3f9clix43nvbsknicm9lyckswc5vj654444zhx08dmgnj5"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + transcriptR = derive2 { name="transcriptR"; version="1.9.0"; sha256="0i5lclprp0ajm56czknqci6wiml9y30gy4y2gzm9150da2d6m3jc"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.3.5"; sha256="0yfkblrbjgm1nf0c7bvb3xks5mmyf4d6g5m0anzhscq2l6a3r01a"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + traseR = derive2 { name="traseR"; version="1.11.0"; sha256="18s4sy6v9wzcyd0i33zh1kf4nbxmsmzpvqsz6nz7d26xprmir450"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + treeio = derive2 { name="treeio"; version="1.5.1"; sha256="1qn2zxv3adkwddar9d76xghamjl9y7589l2b2b17kd1pldx0q9m3"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; }; + trena = derive2 { name="trena"; version="1.3.0"; sha256="1jchm38bwa4bf4a6mjwy4h96qjm65m05qq5yvwdd9257pm1lfs6p"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr]; }; + triform = derive2 { name="triform"; version="1.23.0"; sha256="0rmxaa6hfslpqg5zngcy8s659v9n5mry6kjm1svniz347z7smdrj"; depends=[BiocGenerics IRanges yaml]; }; + trigger = derive2 { name="trigger"; version="1.27.0"; sha256="0yi3r23yw1vsz5y5wxzql0gmvwks0i6kn7f4r53swzmb12fkgs7h"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.19.0"; sha256="1zix49bxx0qiz535cl8pmzjdbh4n4g5qa6bzd87p6ylrzzyxcq0j"; depends=[]; }; + triplex = derive2 { name="triplex"; version="1.21.0"; sha256="0y7r8b1a21cmys6l0li20bnlhi644i3085k8mkh80rzqin30aqgf"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tspair = derive2 { name="tspair"; version="1.39.0"; sha256="0anbb202pazdryadm7ww68nlrmyzand8kiwjfxnf59n6ansls8nd"; depends=[Biobase]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.27.0"; sha256="0aycx0ixg6bj05wz9am84jxbwa9qbbh3hmjp0w4pppzbmv6xrydw"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.57.0"; sha256="0mhx126yqlq76smabagwjxdff6n3vn9vzsr38nn0v8cs4vzq7v20"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.5.1"; sha256="0kw54x0wsf6mdbdzhvlyh8p8s6vw7yr8a2iyac7j50sqz3zwip5y"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + tximport = derive2 { name="tximport"; version="1.9.7"; sha256="0xyb1zigqcpdfcwb3gyn7zwqmdxca4cpwl83qhxrfhb30jccxs6g"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.7.0"; sha256="1f5dabc7ksz6fhx7x87dm8whlxrhzh5zzfysgs18fv6yn815x747"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.17.0"; sha256="0rf9hrilb6d9jr2lbw20d3almds9lmhbdkmm130kx26kybp6vi1i"; depends=[BiocGenerics HTqPCR]; }; + variancePartition = derive2 { name="variancePartition"; version="1.11.6"; sha256="1759wz6xfvsbc0kf09dqq3n59nqqw0z81khh5gvzbgvq5q17ak3h"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest reshape2]; }; + vbmp = derive2 { name="vbmp"; version="1.49.0"; sha256="0h2lwkqx765s6iyyr3mivj83zdg761bci0jz1g8q9wl8xk72ajif"; depends=[]; }; + vidger = derive2 { name="vidger"; version="1.1.3"; sha256="1hvxp7lzy95i37vyhk0xa0dpn64f9kflx6k95cndl0bbivq6lrbb"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.15.0"; sha256="0cl6qn0jw5xgrg2wz9rkx8j5w3hx9vbjw1yh1ayvsdghb4vb8k5b"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vsn = derive2 { name="vsn"; version="3.49.1"; sha256="1lklwnxvwv1x68nyywxkdgla5pz8d94a86whf5x9vcbvcmk92x2i"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.21.0"; sha256="0f89b3s1412sxwp64dlnc8rlawy2w86d1y5g1c7n2hd290m51dvp"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.3.0"; sha256="182aq3ly17chrlisdjsf3zzwxfv004cwbbpl2rfk40ws1376xf1i"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + wateRmelon = derive2 { name="wateRmelon"; version="1.25.0"; sha256="0arrpkdrxy1rz3ryiswq767rz5rqmvs2rxj85lagk6rj17ia64c2"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.15.0"; sha256="0pngqm1b5z8zm5sdnqprq5mibrfm5rwzi0sa0mgwg9gsrn8wcg09"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; + waveTiling = derive2 { name="waveTiling"; version="1.23.0"; sha256="018vhrv092qfyd5vmdbq216h3rsr6xk9nnknb4x0vnk1l7yckrk8"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; + weaver = derive2 { name="weaver"; version="1.47.0"; sha256="096sgg9xrnlf819bh6gz6a9phbhn7a54phd4nl8gz7xfjxscfrhi"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.53.0"; sha256="0vm80p0sbp9lj9d29g3agmkrav4whbndgj4rhw9gz9cd7i1lv0jj"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; + widgetTools = derive2 { name="widgetTools"; version="1.59.0"; sha256="1ypz4rpi6yw6dg1w1dgnjx389xldmjzh484bs9dqzz27ly8b860v"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.5.0"; sha256="1n338nhd8rpdv218qwnlrj8vqvnq131x51nfylzv9a8fn4d3lv7g"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + xcms = derive2 { name="xcms"; version="3.3.2"; sha256="1pnbp8a9gx1ys69yr7vv7mdzl5mcj9azxy0agq16xhxix7mwp13w"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.39.0"; sha256="075yj9vqy4gf5ijirpfnm08rxqzg3bflirlr5j6qmr146jsj5cky"; depends=[]; }; + xps = derive2 { name="xps"; version="1.41.2"; sha256="01da8wc01fry7z8ma880h5g6vvqi3rdwqg5wmx9x56yfg0c293im"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.7.0"; sha256="1h8wz9cm042n9scgpm0m3c7v3wik8nr7lrm4nb47bikzcij7ymd3"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yaqcaffy = derive2 { name="yaqcaffy"; version="1.41.0"; sha256="044gyqh9pk2ml6f99mfjfw7zp2ygnis74jh4x8z7i99q6jip8pbn"; depends=[simpleaffy]; }; + yarn = derive2 { name="yarn"; version="1.7.0"; sha256="19x4r9mmii1r4ypj2p6f4vk396f0xqzbbpys3wqkwklf9gsqia32"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.3.0"; sha256="12yj97g1y37aq4qfyqchgvp93kkb0bzxmk196s1vygh4dk0b36lp"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zinbwave = derive2 { name="zinbwave"; version="1.3.2"; sha256="1arl59nlzksmc95hqp5pj86yj8xq122mdw3ng4pxwdbm5fs63dw7"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.27.0"; sha256="17jr4jgl30qlnmjfzzc1qd1rah5c9bwbp08dsnkhy7fxpwimqm2i"; depends=[]; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index ee3dcdef20c9..db78421cf5ef 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2018-04-20"; }; +let derive2 = derive { snapshot = "2018-07-06"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; @@ -13,7 +13,7 @@ in with self; { ABCp2 = derive2 { name="ABCp2"; version="1.2"; sha256="1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx"; depends=[MASS]; }; ABHgenotypeR = derive2 { name="ABHgenotypeR"; version="1.0.1"; sha256="08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"; depends=[ggplot2 reshape2]; }; ABPS = derive2 { name="ABPS"; version="0.2"; sha256="1k3f5i34f4w2khkszb4qhwwcpiy7gsfh82vjr6rypwg6rx5rjclq"; depends=[kernlab]; }; - ACA = derive2 { name="ACA"; version="1.0"; sha256="0z4wz85iv5k5vw29m6xfh2v96shv314nbxkv3v3yhl77br4bmj4q"; depends=[]; }; + ACA = derive2 { name="ACA"; version="1.1"; sha256="1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"; depends=[]; }; ACCLMA = derive2 { name="ACCLMA"; version="1.0"; sha256="1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"; depends=[]; }; ACD = derive2 { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; }; ACDm = derive2 { name="ACDm"; version="1.0.4"; sha256="0b4f02ga5ra66mbrm79g0bnlzmii82rks9kmxixxqgf18yhlyjil"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; @@ -22,33 +22,32 @@ in with self; { ACNE = derive2 { name="ACNE"; version="0.8.1"; sha256="0kzapsalzw6jsi990qicp4glijh5ddnfimsg5pidgbwxg4i05grl"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; - ACTCD = derive2 { name="ACTCD"; version="1.1-0"; sha256="15l70diy1x2pfyv8miki76frnk3f33qfxcxafh6cp8zwc6gmr0m4"; depends=[R_methodsS3]; }; + ACTCD = derive2 { name="ACTCD"; version="1.2-0"; sha256="0mzjxxr2zfdidw8ibh6w8mvpkw3q3nvngqi05g9ind26ckvk053p"; depends=[GDINA R_methodsS3]; }; ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; }; ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; }; ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; - ADM3 = derive2 { name="ADM3"; version="1.3"; sha256="1hg9wjdhckilqd13dr4cim4j6jsh2sdwm18i3pfmfdj8cyswm3h0"; depends=[]; }; - ADMM = derive2 { name="ADMM"; version="0.2.2"; sha256="0rwszi152nm6rrmgh23js2cv0yfrsa6vky4gmrgszxgx8sw221v9"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; + ADMM = derive2 { name="ADMM"; version="0.3.0"; sha256="0j3sh497pf495qf1ivvp8h4hplq6km6m923kiv5j02sianl1j9zh"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; }; ADMMnet = derive2 { name="ADMMnet"; version="0.1"; sha256="15f1zhgv7xai954qz2ahj4kpxyvr2svxpmybz7j43bhjpkq72dmq"; depends=[Matrix Rcpp RcppEigen]; }; - ADMMsigma = derive2 { name="ADMMsigma"; version="1.0"; sha256="141jzg7cvq1wlscrpb4hfkdshbm0vgzy4cas8vb6abh53j8h2g8q"; depends=[doParallel foreach ggplot2 Rcpp RcppArmadillo]; }; + ADMMsigma = derive2 { name="ADMMsigma"; version="2.0"; sha256="1lyixqbfmrk850y4v89chwws0arjc6j420r55p733p0zvj0mryha"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; ADPF = derive2 { name="ADPF"; version="0.0.1"; sha256="1n7302xx77ngvp9i2h582i1mqslzllcdr0bn3pl2zk9jd8k97p7n"; depends=[]; }; ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; }; AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; }; AER = derive2 { name="AER"; version="1.2-5"; sha256="0qksj91h1c5kaci0w7q1n6780669di146ll5wnbjppnkz57z237g"; depends=[car Formula lmtest sandwich survival zoo]; }; AF = derive2 { name="AF"; version="0.1.4"; sha256="1ych5b2bin65lk415l8rhql2cpma3djnxvdi8ja1hgd9absm7j04"; depends=[data_table drgee stdReg survival]; }; - AFLPsim = derive2 { name="AFLPsim"; version="0.4-2"; sha256="0bbbvv81nxqp5gc4hdhk0hyhb4n8f9w83kf21cgmqhy9cqnyr4s8"; depends=[adegenet introgress]; }; - AFM = derive2 { name="AFM"; version="1.2.2"; sha256="132zbxim3cbyxhv27l9i3jyhf5c47ckzsg4qndpwbyjhd0p9x7qh"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; - AGD = derive2 { name="AGD"; version="0.35"; sha256="1dk8m3zqvapwhz0677d3b2cbrin14p9adn5annzgjrxgw7ms4mg0"; depends=[gamlss gamlss_dist]; }; + AFM = derive2 { name="AFM"; version="1.2.4"; sha256="12k0rx7mi45anyg31gbi8ni9jrfh6asp3cbpwvbhl6kv7ypip9ww"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph mixtools moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; + AGD = derive2 { name="AGD"; version="0.39"; sha256="0hmq684snnffc2v7vmns4ky200a6zh1ggiap03n5cvpb3nlqc6lr"; depends=[gamlss gamlss_dist]; }; + AGHmatrix = derive2 { name="AGHmatrix"; version="0.0.4"; sha256="1l9gk7fl39gwpy5r6fnbzycixj9k22hma2hxlfwqxr3vrvpj66zq"; depends=[Matrix]; }; AGSDest = derive2 { name="AGSDest"; version="2.3.1"; sha256="10jakc2qs5gnbp0g4k05isy0ii73ric50gmwkbb1khf9x0b5v6dg"; depends=[ldbounds]; }; AGread = derive2 { name="AGread"; version="0.1.2"; sha256="17jj6g0df3cldaq4brn1abdivfg7w5bwycbrs70ynmy6iqib8piy"; depends=[data_table dplyr magrittr seewave]; }; AHMbook = derive2 { name="AHMbook"; version="0.1.4"; sha256="1cxyk420pzhh1scagxjmpm328xrcc1mpdrrch92yfgbgx09zkr4c"; depends=[coda plotrix RandomFields raster sp unmarked]; }; AHR = derive2 { name="AHR"; version="1.4.2"; sha256="15khncbbnpbvj6rcn6rklzhv5a0mmfyjljv77bsx96zfis7mk2d7"; depends=[etm MASS Rcpp RcppArmadillo survival]; }; AICcmodavg = derive2 { name="AICcmodavg"; version="2.1-1"; sha256="0y2lgvy0a78wdx4xcq85fkhl4hyvjdljrj199mibisfgkh61amb1"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; AID = derive2 { name="AID"; version="2.3"; sha256="0p3cjbd6kxdy5igmgzkc2bd3w0p0w1jb9jkn9n0id5lv44b5gskj"; depends=[ggplot2 MASS nortest psych tseries]; }; - AIG = derive2 { name="AIG"; version="0.1.8"; sha256="19vw3gycj0i41g08jaf4jh1nff7d0dpqga1hs20gs3n02cxim6mg"; depends=[dplyr magrittr mgcv rgl]; }; + AIG = derive2 { name="AIG"; version="0.1.9"; sha256="1jnnfmcwxcv4fsdcz7jb2lgczxdwrq3qxg2bhsh1610iwz4gzii7"; depends=[dplyr magrittr mgcv rgl]; }; AIM = derive2 { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival]; }; - ALA4R = derive2 { name="ALA4R"; version="1.5.6"; sha256="0fj5y6z179glhc2jj3ksd5w29xmlqm71n23hp1vynrza70fz0gna"; depends=[assertthat digest httr jsonlite plyr RCurl sp stringr wellknown]; }; + ALA4R = derive2 { name="ALA4R"; version="1.6.0"; sha256="1b3j0k5k4kr38df6rdqfm9pyhgzc4xc70fxf83d8061xjf4rq0wk"; depends=[assertthat digest httr jsonlite plyr RCurl sp stringr wellknown]; }; ALDqr = derive2 { name="ALDqr"; version="1.0"; sha256="0gk8hxh4p0fi47sf1zsvvxxbzp38vzk60wh8hmc63phnjab6qkv4"; depends=[HyperbolicDist sn]; }; - ALEPlot = derive2 { name="ALEPlot"; version="1.0"; sha256="14dbn357g48la45xn4x7x5slja7rsrnin8k9s5c4is4rxvigwhwb"; depends=[yaImpute]; }; + ALEPlot = derive2 { name="ALEPlot"; version="1.1"; sha256="0bakl8a7xda7vh9zsc66kkd5w5jmb5j28kfwpfq2ifvk2mrakr3w"; depends=[yaImpute]; }; ALKr = derive2 { name="ALKr"; version="0.5.3.1"; sha256="09df3vx2q0sn8fwz2cc9lckzwrf2hgbglzyn376d6nkrm6gq792a"; depends=[MASS Rcpp]; }; ALS = derive2 { name="ALS"; version="0.0.6"; sha256="1swrn39vy50fazkpf97r7c542gkj6mlvy8gmcxllg7mf2mqx546a"; depends=[Iso nnls]; }; ALSCPC = derive2 { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; @@ -62,33 +61,34 @@ in with self; { AMModels = derive2 { name="AMModels"; version="0.1.3"; sha256="1lhd15sh550z664qqxw6jpknnh628hm585d70ipx8s4mswi6g4hj"; depends=[unmarked]; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMORE = derive2 { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; }; - AMR = derive2 { name="AMR"; version="0.1.1"; sha256="1kyy70g6nh37a1kfcc4p3d8yd61rhsk07rzh8hk0x5zyvc6gcs8l"; depends=[dplyr reshape2 rvest xml2]; }; - ANLP = derive2 { name="ANLP"; version="1.3"; sha256="1m1jnfaqny6qprgyk4f3naan5i5cildawv322h6mc25nypwl12m4"; depends=[dplyr qdap RWeka tm]; }; + AMR = derive2 { name="AMR"; version="0.2.0"; sha256="0n3qzkqxq06vxx0nk4983k7khcy14hc4cxd3cii8lscf3y6bmvjc"; depends=[backports data_table dplyr knitr reshape2 rvest tibble xml2]; }; ANN2 = derive2 { name="ANN2"; version="1.5"; sha256="17b0dv1dl4kni7yvrrwk65cadk6f7qk7505r27j9v530pffyv1k3"; depends=[Rcpp RcppArmadillo robustbase]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; ANOVA_TFNs = derive2 { name="ANOVA.TFNs"; version="1.0"; sha256="0dwspvxj2gzyvxsd9xyhv47n1hjlqa7z9qza4h3hn1xda12vkjly"; depends=[FuzzyNumbers]; }; ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.3"; sha256="1cmps21lrmk6lh6gx0q9fz2736q7cibfcisvir6hnik3ablv70bn"; depends=[quadprog shiny]; }; APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; }; - APML0 = derive2 { name="APML0"; version="0.8"; sha256="15qg0iapl2qh4llc8qazxc9qb4fi82snnw2agjgi29zcq7lzi2ww"; depends=[Matrix Rcpp RcppEigen]; }; + APML0 = derive2 { name="APML0"; version="0.9"; sha256="1scvcrcsjgdrq9gfv8qxbd703k76cyk01ml93bcr8j8kiwv05z0f"; depends=[Matrix Rcpp RcppEigen]; }; APPEstimation = derive2 { name="APPEstimation"; version="0.1.1"; sha256="1bg9ma4i3k3xdgyk2h4f368gqnczvlhvjw4114iznmrv1wl4g25c"; depends=[densratio]; }; APSIM = derive2 { name="APSIM"; version="0.9.2"; sha256="0yyjz1kyvqpw9dh71ls2lf44gbb6r7bp9a22mr3z68k89azps5rc"; depends=[data_table lubridate plyr RSQLite sirad stringr]; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; APfun = derive2 { name="APfun"; version="0.1.3"; sha256="02p40n4l66r63wq8x7ygchfhxmnpaa7vgy4bjhkqx5gfi2v4psxd"; depends=[maptools raster rgdal sp yesno]; }; APtools = derive2 { name="APtools"; version="3.0"; sha256="0v5xgznc8hvw3gid8x5chksc62zpwbx34qsh64sv7d1kqmh5w26j"; depends=[survival]; }; - AR = derive2 { name="AR"; version="1.0"; sha256="1h9rzlwnfm646s7423pcxz0zqykyadiw4sbxlygy2382la81x69x"; depends=[DISTRIB]; }; + AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; AR1seg = derive2 { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; }; ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; + AROC = derive2 { name="AROC"; version="1.0"; sha256="1mmcd8nqwzaqghzbcrv0g767j57svzvlzgk71ir61vvjhsk91dkg"; depends=[Hmisc MASS Matrix moments np]; }; ARPobservation = derive2 { name="ARPobservation"; version="1.1"; sha256="1cdhn11jf1nf03jyvs17ygmjq9pb5rvmyyrq9fp7ifmvcgbkwsms"; depends=[]; }; ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; ARTIVA = derive2 { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; }; ARTP = derive2 { name="ARTP"; version="2.0.5"; sha256="0lwvhf5lamw28sd41vrhyin8ab92rl93j1ahk0aacwvnikgmfkpj"; depends=[]; }; ARTP2 = derive2 { name="ARTP2"; version="0.9.32"; sha256="12mrxssjcj08svdsrxv2nm53mzsgy1k0whd5zzy6fz327bjyqsrz"; depends=[data_table Formula]; }; ARTool = derive2 { name="ARTool"; version="0.10.4"; sha256="1malrjv4myk9nj3dndgpzscfhky4y6lj8xbfg8h2b29g7s2k846q"; depends=[car dplyr lme4 magrittr plyr]; }; - ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.1.0"; sha256="017m7cji04gbcn396jz428llik15zgdvbr6bf1c8scds692paz3n"; depends=[sp]; }; - ASIP = derive2 { name="ASIP"; version="0.3.2"; sha256="0zrn3hnn46zxmvchicyzy7zz2jnv8y1249a6sdi3w9rw2d8q025g"; depends=[gdalUtils raster rgdal]; }; + ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.2.1"; sha256="0f0bl1fxda012d8pgqpaqb80m0nn490xih3ddscfqgb87zgrp4sx"; depends=[sp]; }; + ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; }; ASMap = derive2 { name="ASMap"; version="1.0-2"; sha256="0fhivq5i2py79jkwfms0my77p9x8lrkn5vn1lwbsawfkyar4dvkq"; depends=[fields gtools lattice qtl RColorBrewer]; }; ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; }; + ASSA = derive2 { name="ASSA"; version="1.0"; sha256="0xdmkl3qy1i6rb5wpiw6rqhz5c88zg9nav7qll235jvxwh3388xk"; depends=[]; }; ASSISTant = derive2 { name="ASSISTant"; version="1.2-3"; sha256="072lmvmdi5yfyfda42vs556ciwj2rnka02isnknk6czir3947nck"; depends=[mvtnorm R6]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATR = derive2 { name="ATR"; version="0.1-0"; sha256="0ljrpix3ksi0v38sfb25s2dlfj1yjbvwcz147dk2v2c24cn3r816"; depends=[partykit]; }; @@ -110,27 +110,26 @@ in with self; { ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; }; AdMit = derive2 { name="AdMit"; version="2.1.3"; sha256="150zjxl56axhpgm25hzyhwwc5g77pkgi291d2v56zbjjqycfz2v8"; depends=[mvtnorm]; }; + AdaSampling = derive2 { name="AdaSampling"; version="1.1"; sha256="1n3kcxmhzllnj2cac5jx400k85n20dgjmgma9r6wva43j49sag05"; depends=[caret class e1071 MASS]; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; }; AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; AdaptFit = derive2 { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; }; - AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.65"; sha256="0f92dgfiglbklr4lv5kqxks8d04f675jlj2xjy9aqk4cgdj264xk"; depends=[MASS mgcv nlme SemiPar]; }; + AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.67"; sha256="0s8vv960pkbccpwlfsg1jsfjnfmq9iy8cj1fak5fn2s60zb7nm0a"; depends=[MASS mgcv nlme SemiPar]; }; AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.3"; sha256="0f6wk9ds8ayzi0fj1dz1m3755d1sjv4v5vc1hjhfxaim127kmbqh"; depends=[caTools ggplot2 shiny]; }; - AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.4"; sha256="1az7isvalf3kmdiycrfl6s9k9xqk22k1mc6rh8v0jmcz402qyq8z"; depends=[Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; - AdhereR = derive2 { name="AdhereR"; version="0.1.0"; sha256="07r3a8bfhwm2pghhngavw4z6gv42dyq21dz2lypapcv32qnxkaag"; depends=[data_table lubridate manipulate snow]; }; + AdhereR = derive2 { name="AdhereR"; version="0.2.0"; sha256="1w42wg52ca0vdrj61dmyikvjvsndwhpyvnkzyissf3zvb69v32im"; depends=[data_table lubridate manipulate shiny]; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; }; AdvBinomApps = derive2 { name="AdvBinomApps"; version="1.0"; sha256="1cnmn6c2dyl8qfl7g5sqwbjb52psqxzrj1mbm06zak2y1j7j8f49"; depends=[GenBinomApps rootSolve]; }; + AdvDif4 = derive2 { name="AdvDif4"; version="0.2.18"; sha256="0vc8hbqjad9rsssd3ff84bgqxz4q6ad1fbz5gcaq1s08979r3kkk"; depends=[]; }; AggregateR = derive2 { name="AggregateR"; version="0.0.2"; sha256="15gxzs3baa6f1rqwv7s7k6zybx0za1mpzc7db1n47jy9rbh2yxb2"; depends=[dummy]; }; - Agreement = derive2 { name="Agreement"; version="0.8-1"; sha256="1g29rxr8xsr0dh2r6c6j2bqs0q6snz9wz0hrnb92cxj27ili55yq"; depends=[R2HTML]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.0"; sha256="0k2lcyxfsavis9g1g5293f0mw7f6jakkr11wkkjvxdlnba9c80r8"; depends=[Rcpp]; }; Ake = derive2 { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; }; AlgDesign = derive2 { name="AlgDesign"; version="1.1-7.3"; sha256="0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"; depends=[]; }; AlgebraicHaploPackage = derive2 { name="AlgebraicHaploPackage"; version="1.2"; sha256="1krm5cx609sv2p0g3xm5jaiqs9li06v717lw7ywjvx7myc9x4c07"; depends=[]; }; - AlignStat = derive2 { name="AlignStat"; version="1.3.1"; sha256="1x9nlf3z6rpfca3k3cqm673sid418mnl44df9v93nyj5dpd70ylc"; depends=[ggplot2 Rcpp reshape2 seqinr]; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; }; - Amelia = derive2 { name="Amelia"; version="1.7.4"; sha256="0w6532s5xr7pw47zqhhymql7i68c4lralvw1gc26l9d4c7ib00fd"; depends=[foreign Rcpp RcppArmadillo]; }; + Amelia = derive2 { name="Amelia"; version="1.7.5"; sha256="1mnvms3bgc5i0v7wdmfx7nikr8wxyzmqi36sj2fz4qv5b0mf4zpa"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; AmesHousing = derive2 { name="AmesHousing"; version="0.0.3"; sha256="1fr01ka8x8gdnky6cbd2bjlh1lx71gzq440zsknn9kxvf01s6pxm"; depends=[dplyr magrittr]; }; AmigaFFH = derive2 { name="AmigaFFH"; version="0.1.2"; sha256="0749j6m8pvdq4lm0n46bn052nxvplh3nvp2miz4hagw8q2p5fsyl"; depends=[adfExplorer ProTrackR tuneR]; }; @@ -140,7 +139,7 @@ in with self; { AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; }; AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; }; AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.1"; sha256="1v8jlyzqp9k084lzmaihp5nh7mybbgnnxnbbfkydq24b9wskfd4b"; depends=[Rcpp]; }; - AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-16"; sha256="1mbjb682ns5230jd3vcvd6x4gnn9hpbmjd7r8120y4sp2g733b0f"; depends=[fastICA R_matlab]; }; + AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-17"; sha256="1gqhjknqq325m0ryabcdw1r3j5b9xwxg09ndqdcyw4rknc2mdzn1"; depends=[fastICA R_matlab tkrplot]; }; AnalyzeTS = derive2 { name="AnalyzeTS"; version="2.2"; sha256="0ll4g8yzxhricz56vin8hhyplrmvjmkwfldya41vz6y6bwhywnmb"; depends=[MASS TSA tseries TTR urca]; }; AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; }; @@ -152,8 +151,7 @@ in with self; { AnthropMMD = derive2 { name="AnthropMMD"; version="2.5.0"; sha256="0pp9ihrkjwzp6zyglkp81ry4fzm1s26r687bhxswx5iz1brzmhdn"; depends=[scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.10"; sha256="1rny65070yrdxnny8frp5ryp811h59924z5pfwg0cmd2szxnxnz7"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; - ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.2"; sha256="01h8hi76nlwn9hnfyvzyg2d25s2r0vgpl5rz37yqkhjs5xr3rpyi"; depends=[doParallel foreach stringr]; }; - AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-6"; sha256="004d2k3mhl45inb7kx1ph8xc8h9bgm7f7l3prmvqrl5792400cn4"; depends=[CORElearn MASS plyr reshape2]; }; + AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-7"; sha256="1wi0sw5w1c51rmh9z98wdpk5rgzsylkkb6g019djiwxvj92l99hh"; depends=[CORElearn ellipse lattice MASS plyr reshape2]; }; AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; }; ArArRedux = derive2 { name="ArArRedux"; version="0.2"; sha256="0ql9yx46sgqkc3jd7yaw3vwg8rnykbsvpcahrgc66753kcxih04q"; depends=[]; }; ArCo = derive2 { name="ArCo"; version="0.3-1"; sha256="1afjdmcalx3m19jlvqs83fg5qlds59l5zzg3pzk13qk31r0hz7mk"; depends=[boot glmnet Matrix]; }; @@ -162,12 +160,13 @@ in with self; { ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.3"; sha256="0012rjbk3bxf6j7p0skp02yrgqzl903dclnmm7c038f941krjcfq"; depends=[coda DT ggalt ggplot2 ggthemes hdrcde readr shiny shinythemes toOrdinal]; }; ArfimaMLM = derive2 { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[fracdiff fractal lme4]; }; ArgumentCheck = derive2 { name="ArgumentCheck"; version="0.10.2"; sha256="0mgx7mzbg2wynixcf9hvs0i9p4zka7c3chrfvjmvvvwwgsy24hkc"; depends=[]; }; - Arothron = derive2 { name="Arothron"; version="1.0.0"; sha256="0fwxrjkqq8dkh38s3dcky0d6nggnmvfik0w3c4mzslzipnm84sin"; depends=[compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; + Arothron = derive2 { name="Arothron"; version="1.0.1"; sha256="1zqc73i4bl9mbrijmfix4rl14ljh7sj0j1bdx6d65knscjr522sr"; depends=[compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; ArrayBin = derive2 { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; }; AsioHeaders = derive2 { name="AsioHeaders"; version="1.11.0-1"; sha256="1g226im9aakqdv5gynsl568w0mxcbfrny9lqid7pl984pq8xr8ks"; depends=[]; }; AssayCorrector = derive2 { name="AssayCorrector"; version="2.0.0"; sha256="0d2444if5hyfbzyminnspw686r5l4pf9cdj9k48n2539vd61k452"; depends=[kSamples lattice latticeExtra RColorBrewer RVAideMemoire]; }; + AssetCorr = derive2 { name="AssetCorr"; version="1.0.1"; sha256="1ls08p120gn7mv7nfslc08dw159d001z57xx9wkyfz7v8r27qhsy"; depends=[boot ggplot2 mvQuad mvtnorm numDeriv Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-1"; sha256="0pbb1362dgdipbj3h50ykissl3gdqf1j1mpq53ixprvyc966c5h4"; depends=[deSolve polynom]; }; - AssocAFC = derive2 { name="AssocAFC"; version="1.0.1"; sha256="0fxqsj2a9wi5py4sw3mzf27zx82nbj1q294vj1n0jh9ryc68wyh3"; depends=[CompQuadForm]; }; + AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; }; AssocTests = derive2 { name="AssocTests"; version="0.0-4"; sha256="1fhqzbj4aj4srkiba79w8wdyc7yy701izklxqqa7lsifnca6gn4j"; depends=[cluster combinat fExtremes mvtnorm]; }; AssotesteR = derive2 { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; }; AsynchLong = derive2 { name="AsynchLong"; version="2.0"; sha256="1wjby75rpypzyrxnv2lgl7h2fsvyni3bpiwclp0x7cl4sxic1x5c"; depends=[]; }; @@ -186,25 +185,25 @@ in with self; { BACCT = derive2 { name="BACCT"; version="1.0"; sha256="0bpm4l27vbblzi2hhfbjw2af3ic2jbnyghkvchpq8ww43k8068iv"; depends=[ggplot2 reshape2 rjags]; }; BACprior = derive2 { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[boot leaps mvtnorm]; }; BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; - BALCONY = derive2 { name="BALCONY"; version="0.2.0"; sha256="0ddg5fy82yxnmh54dilpljwfziqpc8rjladmcdnn5p98n9a6ypvl"; depends=[Biostrings dplyr readr Rpdb scales seqinr]; }; - BAMBI = derive2 { name="BAMBI"; version="1.1.1"; sha256="1jzvsaf9cn28ny40vg0wlvdqz6f4i7n6iyym8s0aj58aiazwsmh5"; depends=[label_switching Rcpp RcppArmadillo]; }; + BALCONY = derive2 { name="BALCONY"; version="0.2.7"; sha256="1xdhldr6y3hrnp4g3zpplfcgiv0n8ci792hkaps9l47799vww03r"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; }; + BAMBI = derive2 { name="BAMBI"; version="2.0.0"; sha256="09ib729h3wz1gbadsrlj2y05xbdwms9m4dhwmq9dfzm9v9qpw9n0"; depends=[bridgesampling coda future future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; }; - BANEScarparkinglite = derive2 { name="BANEScarparkinglite"; version="0.1.1"; sha256="1xs65drkpd1zmrvyrv0kndd5z5q4y425524w6mrh96qya9qjrmsx"; depends=[dplyr httr lubridate RCurl readr rvest XML xml2 zoo]; }; - BANFF = derive2 { name="BANFF"; version="2.0"; sha256="1c5wdwqqvkcm9910lhd387snd7myv9qzs9vfk87vzp3di7hdi4l6"; depends=[coda doParallel DPpackage flexmix foreach GGally igraph mclust network pscl truncnorm]; }; + BANEScarparkinglite = derive2 { name="BANEScarparkinglite"; version="0.1.2"; sha256="0yxsgk4p7i8arjkchsiml6lx97inpmaihb61787vcl8kxyx7v6wr"; depends=[dplyr httr lubridate RCurl readr rvest XML xml2 zoo]; }; BANOVA = derive2 { name="BANOVA"; version="1.1.1"; sha256="11cvf7wjip1vn5qn9hwxvdh98i8li9ijydfywf2ks2hls2430qbk"; depends=[coda rjags rstan runjags]; }; - BART = derive2 { name="BART"; version="1.6"; sha256="06a6bxrxspgjij8mgi1gzq7fbak9zqppprl55jbb91nkf13svbzq"; depends=[Rcpp survival]; }; - BAS = derive2 { name="BAS"; version="1.4.9"; sha256="0c0mj7ijgghbjmyrwr6qp2a3iidsxli3a0wb4njjaj5n7b7yggby"; depends=[]; }; + BART = derive2 { name="BART"; version="1.8"; sha256="1nb1xj2v8d54fw4fppfsvai3q8csavqiksrybsc7imb4cfvdkw9h"; depends=[Rcpp survival]; }; + BAS = derive2 { name="BAS"; version="1.5.1"; sha256="0p1pjv8nx3jkjn8j9r87lngwgwxra3hh8qj6qklppnkznly533hr"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; BASS = derive2 { name="BASS"; version="0.2.2"; sha256="1q3sihp2iv1ikggzgd2k3vh2myz8bz31rzlaavw0n84d0h1zjxy2"; depends=[]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.3"; sha256="0kcmc4jpiwmdydbyjfm1jx4ravxkqzvqca3p5gp26nx14xglm9hi"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; BAT = derive2 { name="BAT"; version="1.5.6"; sha256="0m6yfxymhzi8n2l421ngy6cz3qa5v7yrd1jhpi8ymlnf8dysd57x"; depends=[nls2 raster spatstat vegan]; }; BAYESDEF = derive2 { name="BAYESDEF"; version="0.1.0"; sha256="030xskgqqg0n85mphjv32ks4ysvxb36f6ayy0176gps14jhmhcp7"; depends=[glmnet gWidgets readxl REdaS]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; - BAwiR = derive2 { name="BAwiR"; version="1.0"; sha256="0bic9f84cnjka6vk55icjviqr206fmv7lnihvdksnbghgcya890w"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plotly plyr purrr reshape2 rvest rworldmap scales stringi stringr tidyr xml2]; }; + BAwiR = derive2 { name="BAwiR"; version="1.1"; sha256="1wdwvghdhlld4iim49ia3k3g1rxrji8qh6jy63klglq6hb1rwx6c"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tidyr xml2]; }; BB = derive2 { name="BB"; version="2014.10-1"; sha256="1lig3vxhyxy8cnic5bczms8pajmdvwr2ijad1rkdndpglving7x0"; depends=[quadprog]; }; BBEST = derive2 { name="BBEST"; version="0.1-6"; sha256="1hvgi3679ixpq0c5qbxhkp1j0953k3lklglgxrq9mz2ry6z9n038"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; }; + BBI = derive2 { name="BBI"; version="0.2.0"; sha256="1mv6sh853y8p4by76637bky6yl57qyhmgqmd2n2k7r0cxg8hprcx"; depends=[vegan]; }; BBMM = derive2 { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; }; - BBMV = derive2 { name="BBMV"; version="2.0"; sha256="18sikaj3l5bvbpnl03rzm0h3zrgnnwv716spb2050jz6gzvgd2dx"; depends=[ape]; }; + BBMV = derive2 { name="BBMV"; version="2.1"; sha256="11d4wd1zx99hrhwagw73jkk088rz5vgkjml6mckssc2iqvhj1dc9"; depends=[ape]; }; BBRecapture = derive2 { name="BBRecapture"; version="0.1"; sha256="05xzp5zjmkh0cyl47qfsz0l8drg8mimssybhycc4q69aif9scqxb"; depends=[HI lme4 locfit secr]; }; BBmisc = derive2 { name="BBmisc"; version="1.11"; sha256="1lh1n4bvxzivb5rbz69mvd8xdgr3gr2bnqd68a39sd1530l8r90y"; depends=[checkmate]; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; }; @@ -214,43 +213,46 @@ in with self; { BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; BCEA = derive2 { name="BCEA"; version="2.2-5"; sha256="0jiizwnxycbz9x8fmkcw3rcjkgg5b9fawyddf8swvx23cnfm6z8z"; depends=[MASS]; }; BCEE = derive2 { name="BCEE"; version="1.2"; sha256="08jsnsy7l182n0gy2jy0l9a7grr62g57gz3217fzapk2im2q648b"; depends=[BMA leaps Rcpp RcppArmadillo]; }; - BCRA = derive2 { name="BCRA"; version="1.0"; sha256="1bbxh1kf35h31c4k565kk6grdhp5pnn8vr3nr6vnp32dp4pc05zh"; depends=[]; }; + BCRA = derive2 { name="BCRA"; version="2.0"; sha256="1g0iix3ik2gsxpz6zp5fz2ka1y5xybs6x3r42ssnlffcmmdd9bsw"; depends=[]; }; BCSub = derive2 { name="BCSub"; version="0.5"; sha256="0c8dlxsx23qfyygmajg2amj78ax01kb3808d9hvy7g3hkgp2i2fp"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; }; BCgee = derive2 { name="BCgee"; version="0.1"; sha256="0ad0dj2ymgvkmcmq3jlpmn0pgigdql0xgvcwsbpdydv33a6snr04"; depends=[]; }; BClustLonG = derive2 { name="BClustLonG"; version="0.1.2"; sha256="0w35pwv3y00pmi4qjnzii3q44k7lk13x0cmh1zq3cl42gpi31p7f"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.46"; sha256="1y3rcl0x1cvcsfp4p1v82v0i119izwa8hkvs5qang70slv973bbv"; depends=[igraph Matrix]; }; + BDgraph = derive2 { name="BDgraph"; version="2.51"; sha256="08cc9ab7ipkxm5jxg5qyq40l58jqf5yg02igxi3xbqrb946ynqqx"; depends=[igraph Matrix]; }; + BE = derive2 { name="BE"; version="0.1.0"; sha256="1mav5hvzsggh13szny0s0iy44di2jna523z8cjcy89s7nv2fqaag"; depends=[]; }; BEACH = derive2 { name="BEACH"; version="1.2.1"; sha256="0a6xwczw3d2jnksb5lpf7j859pnyfxcab4kfv4v7lmf9iasbyyf5"; depends=[devtools DT haven plyr readxl rJava rtf sas7bdat shiny WriteXLS xtable]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="1.4.0"; sha256="0aha33skksh45fx248lx6v8cxwgkiripw3avspb8arbld9rmqwxn"; depends=[BH crochet Rcpp]; }; BEQI2 = derive2 { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; }; BEST = derive2 { name="BEST"; version="0.5.1"; sha256="0yx3bkaaly0lriyd5xr7aay4c381a5iwanfixz9v37cmvs64rs4s"; depends=[coda HDInterval rjags]; }; - BETS = derive2 { name="BETS"; version="0.3.6"; sha256="0m32ad2ysb5dr4125fccrbi5cndal3qml0lflnp9kdbm6wwhqv85"; depends=[DBI DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny stringr urca webshot xml2 zoo]; }; + BETS = derive2 { name="BETS"; version="0.4.4"; sha256="0cfndahvqdma95sbyf4r3bhf6hxplkx7dmpcx41s1mqcr0bgnxvp"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BGData = derive2 { name="BGData"; version="1.0.0"; sha256="0xd7xpnvhpyvv6caxyif7wa25llvrnyzmmk4z6rp7absjqbz2alc"; depends=[BEDMatrix bigmemory bit ff LinkedMatrix symDMatrix]; }; - BGGE = derive2 { name="BGGE"; version="0.6.1"; sha256="1ndn4cj9mrkx2mrlh2dgyy3lpx526fmg91zqgvdcbvn99r5sl17j"; depends=[]; }; + BGGE = derive2 { name="BGGE"; version="0.6.3"; sha256="0i7dz1j2p3nmqad6ja5b45maa3a1wn1gsh1g7sahyqr72s2bvvkn"; depends=[]; }; BGLR = derive2 { name="BGLR"; version="1.0.5"; sha256="14a979rnasaklkfafzpkhr6mqv0ga7fsfxq63scpnlwa2aasgn83"; depends=[]; }; BGPhazard = derive2 { name="BGPhazard"; version="1.2.3"; sha256="1yp92y5y3xh0hb1ring6jrma8g4q6210hm9572j8ji1jkafzxjw1"; depends=[survival]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; BH = derive2 { name="BH"; version="1.66.0-1"; sha256="14kab6wp0c27d8x4jqyf065p4bj210s9b67c0bfsfjnp29aypn8p"; depends=[]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="1.1"; sha256="1qygizn2np9amkm1f1332zp9ab9ky423plr9lahgwzdxn1c2c5c2"; depends=[AnalyzeFMRI fmri wavethresh]; }; - BIEN = derive2 { name="BIEN"; version="1.2.2"; sha256="11bqbkw6v4yvlvpv0bhmn5q7ady12hmp9ziak5jzsc7p4d8azd5r"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; }; - BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="2.4-9"; sha256="0v9q2gxb7i9zgkkf8ka85r3l3ypg21fzl48paliqi5ac144l177q"; depends=[miceadds mitools Rcpp RcppArmadillo survey TAM]; }; + BHTSpack = derive2 { name="BHTSpack"; version="0.4"; sha256="15a1xx2j6s94jrhlbbkriqzs7wfbh2nkz564zvmn20czmaf7v5iq"; depends=[R2HTML xtable]; }; + BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; + BIEN = derive2 { name="BIEN"; version="1.2.3"; sha256="0p23kahba55gkk6wx10ii6vrni3b7ia2a4jb64ww4kwp86bknx3d"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; }; + BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="2.5-44"; sha256="16mgbf2jpz3fkn1gb8xcc8h45k8p74sq5gp2kk8q2g3z7gg697xh"; depends=[miceadds mitools Rcpp RcppArmadillo survey TAM]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="2.1"; sha256="0zvy5sl94qi20gdrnxb2lmadfy7p0wqfngjsf6jc2cgwyzk4gnrj"; depends=[haplo_stats httr knitr rmarkdown XML]; }; - BIGL = derive2 { name="BIGL"; version="1.1.1"; sha256="008f3x0hkmifra1wcv56hxjjf2rqc9qxsbpi23aq4pgk7mxdaax7"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; - BINCOR = derive2 { name="BINCOR"; version="0.1.0"; sha256="0fzynq85zbjybylxrpk89sq4l1ccm8k4z1bn25b6rgnz5m18r8hs"; depends=[pracma]; }; + BIGL = derive2 { name="BIGL"; version="1.2.0"; sha256="1n14ar765iqafi8ckpghxrafivmpf583yckfxk07haz4186klvss"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; + BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; BIOMASS = derive2 { name="BIOMASS"; version="1.2"; sha256="1d9rwgh0ws27yd0p2la7pn49sb71lh9bg4f42fpx448ah8dimw17"; depends=[httr jsonlite minpack_lm msm raster]; }; BIOdry = derive2 { name="BIOdry"; version="0.5"; sha256="0isvqs2bgirxwb7b1dbn70zfx9b4mw7fp33fwmxq0dx6k1r4f87g"; depends=[ecodist nlme]; }; - BIPOD = derive2 { name="BIPOD"; version="0.2.1"; sha256="04r58gzk3hldbn115j9ik4bclzz5xb2i3x6b90m2w9sq7ymn3zg1"; depends=[Rcpp RcppArmadillo]; }; - BIS = derive2 { name="BIS"; version="0.2.0"; sha256="15wybfj03rzrxxdm19mm7b7c2l71lzs50n7vw8vnyx1n5w1k97jv"; depends=[dplyr readr rvest tidyr xml2]; }; + BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.1.5"; sha256="0wnxfyl8hz1a0k33v5nc3j1ziwcv1fnw8639l0xv92p5rn7n5nc5"; depends=[mvQuad numDeriv randtoolbox Rcpp ucminf]; }; BLR = derive2 { name="BLR"; version="1.4"; sha256="0wy3c8nnzkdhwb5s1ygdid47hpdx72ryim36mnicrydy0msjivja"; depends=[SuppDists]; }; BLRPM = derive2 { name="BLRPM"; version="1.0"; sha256="15q0jkw4swz35c58nv23k8g1dy1kkbqh5aydjck7pd0fmppqrhpx"; depends=[R6]; }; + BLSM = derive2 { name="BLSM"; version="0.1.0"; sha256="02xidwp91rh34rcqd0q552wzm2j80axs1nnwwv2aj04g96lf7myj"; depends=[Rcpp RcppEigen]; }; BMA = derive2 { name="BMA"; version="3.18.8"; sha256="1a32ghn17ymb3zdh9xv6zvqcxc81m4y478mk6z9bfndq7ihy1ih5"; depends=[inline leaps robustbase rrcov survival]; }; BMAmevt = derive2 { name="BMAmevt"; version="1.0.1"; sha256="1krx8isj2wp3panjcbc2ysrc2pxz2casj12qq9p18imaa326l53y"; depends=[coda]; }; BMRBr = derive2 { name="BMRBr"; version="0.1.0"; sha256="1z54annplzydnxvwd0rkhcw5rmfx8r99k28ld5rgh22xq3zdq825"; depends=[rvest xml2]; }; @@ -267,7 +269,7 @@ in with self; { BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2017.03"; sha256="0anpi75wwx91dbm937ydgcpd8wchm0nyciy4xdhppsvzq9v3d2hp"; depends=[]; }; BNSL = derive2 { name="BNSL"; version="0.1.3"; sha256="1918dc73gasac45kzcf4pxvl8iaawzkqdi03ny0napbjr3z8rss2"; depends=[bnlearn igraph Rcpp]; }; - BNSP = derive2 { name="BNSP"; version="2.0.2"; sha256="0vapcf8qxcdmragbmwai4yddpmwwm79mksf4zcych0d4a0ij39h6"; depends=[coda ggplot2 gridExtra plot3D threejs]; }; + BNSP = derive2 { name="BNSP"; version="2.0.6"; sha256="0phi41khw525nsrizxak933j2hlhpkgdskvwv8yqljhvyamxgaql"; depends=[coda cubature Formula ggplot2 gridExtra plot3D plyr threejs]; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; BOIN = derive2 { name="BOIN"; version="2.6.3"; sha256="0hvx75zjb5bj005ggj9j67p9f8hpq8p6c0ihidf3avfrirl8g98p"; depends=[Iso]; }; BPEC = derive2 { name="BPEC"; version="1.2.1"; sha256="142x0iw3sanvqm0n2hfba8pwndfk8l5qzhgpca9gcya7wkcmmmf7"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools R2G2 sp]; }; @@ -278,39 +280,39 @@ in with self; { BSL = derive2 { name="BSL"; version="0.1.1"; sha256="0g8nqsnhrghan2kx5iciv01drzn8kbx5klmrvcjz0ajfqjdm8kg4"; depends=[coda cvTools foreach ggplot2 glasso gridExtra MASS Rcpp RcppArmadillo]; }; BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; }; BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; }; - BSagri = derive2 { name="BSagri"; version="0.1-8"; sha256="148pr4lkgdi4bwc9lavgj356nh240iazz28xklq14rw4gzhmz2k4"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; + BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; BSquare = derive2 { name="BSquare"; version="1.1"; sha256="1s16307m5gj60nv4m652iisyqi3jw5pmnvar6f52rw1sypfp5n49"; depends=[quadprog quantreg VGAM]; }; BTLLasso = derive2 { name="BTLLasso"; version="0.1-7"; sha256="1lhi3dlg37g4r7nrj46w1yc8jkrzi9159ansapnqdi15jrjpx9p9"; depends=[Matrix psychotools Rcpp RcppArmadillo stringr TeachingDemos]; }; BTR = derive2 { name="BTR"; version="1.2.4"; sha256="0vf71a36id6zgx0phb0kyry7y9xcdhnincxh3fryzhdigxkahg4h"; depends=[diptest doParallel entropy foreach igraph infotheo poweRlaw Rcpp]; }; BTSPAS = derive2 { name="BTSPAS"; version="2014.0901"; sha256="0ankkhm38rvq06g0jnbvjbja4jv8lg21dsc0rxsy174b1i6vjhwi"; depends=[actuar coda ggplot2 plyr R2OpenBUGS rjags]; }; BTYD = derive2 { name="BTYD"; version="2.4"; sha256="13szcsgsrd7mwc4f47xrfrmsm2sg5sf7pfm21ly4cbvqcz8m0147"; depends=[hypergeo Matrix]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.0.1"; sha256="0x8as4zskpbsvhh8gnvzgp833dkv01cs5fqfva9qri296343kppv"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; - BUCSS = derive2 { name="BUCSS"; version="0.0.2"; sha256="188d9f0gdhym28xvvk5z10amdbg50w6ab4ik2r9qfc3p1v7k10q9"; depends=[]; }; + BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; + BUCSS = derive2 { name="BUCSS"; version="1.0.0"; sha256="133wsv784abrs6s1rhdi65qdrw5wx806r6pf76g3vbsf2qhk51qb"; depends=[]; }; BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; }; - BVSNLP = derive2 { name="BVSNLP"; version="1.1.0"; sha256="09vffm27jwpfmil6dn7jbsrh9ys3199l0qpfqrjcvz21nsgd43hg"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; + BVSNLP = derive2 { name="BVSNLP"; version="1.1.5"; sha256="1m6cpxm6pd831472qzj370f6q9sf416zd6ixphg3yqvvakgdznv8"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BWStest = derive2 { name="BWStest"; version="0.2.1"; sha256="1kwd1s1dd21qca31np49aql839j8325y8bnxlcq84nw48vqv0jgc"; depends=[memoise Rcpp]; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; }; BaM = derive2 { name="BaM"; version="1.0.1"; sha256="0y8m6mhghlrp379swj9cfrzqcdr3a7y29mx4d6zld4is00wdw16b"; depends=[coda dlm MASS mice nnet]; }; BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; BaSTA = derive2 { name="BaSTA"; version="1.9.4"; sha256="1j092gsdip7rpw0g74ha0kjsrqpp5swi7wd4sxlmx6zarcqnxlal"; depends=[snowfall]; }; BaTFLED3D = derive2 { name="BaTFLED3D"; version="0.2.11"; sha256="0gab9iz1ra72hw8j31n97ysyr3cclhgvdxriyjk8wwv2nrmbw12h"; depends=[foreach iterators R6 RColorBrewer rTensor]; }; - BacArena = derive2 { name="BacArena"; version="1.6"; sha256="1w25xrb0gafcw3h7bf44x96zyv108gzlk273nf2835768m4psacr"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr Rcpp RcppArmadillo RcppEigen ReacTran reshape2 sybil]; }; - Bagidis = derive2 { name="Bagidis"; version="1.0"; sha256="1prdbkc0qgzkkrkhp43pjyg35q9ivngk8wa4a7khlnfsj21jaraf"; depends=[abind]; }; + BacArena = derive2 { name="BacArena"; version="1.7"; sha256="137n3nyz68v912c5nhq1qslgifb7k797f5sz567smhimzjhx842f"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr Rcpp RcppArmadillo RcppEigen ReacTran reshape2 sybil]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.1"; sha256="09mkssic173glgcn592cb6zmz80kndggqc4hc800f91xnfql0332"; depends=[ade4 mvtnorm]; }; BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.2"; sha256="0a4mb5lwjcy5d3h0ypsqmqniqx3dm64mssj65apgl48wqbm6zvv0"; depends=[Rcpp]; }; - Ball = derive2 { name="Ball"; version="1.0.0"; sha256="1b4p4isgybxid14yywpgl7nv4d126281901wvwx6qwvf40nbfq3l"; depends=[gam survival]; }; + Ball = derive2 { name="Ball"; version="1.2.0"; sha256="1x3l3bg4mn5kvm98p1ypn7gi61q2wm1224n9d99x1pms1iqhx4zv"; depends=[gam survival]; }; BarBorGradient = derive2 { name="BarBorGradient"; version="1.0.5"; sha256="0g2g7hrm23as1xbj79g48r8sj3gsj66fmi895jqlqfbqrl2fl7a5"; depends=[]; }; BarcodingR = derive2 { name="BarcodingR"; version="1.0-2"; sha256="1mn5rdax8v1s2z3apk9z0kzy4hw19m8ql6j91l6wd29g2n2bjqxx"; depends=[ape class nnet sp]; }; Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; }; - Barycenter = derive2 { name="Barycenter"; version="1.3"; sha256="1xrcbr80az80h9hx1ik9cxi86j9j9663iv62kgkh6lknafl3mmh5"; depends=[Rcpp RcppArmadillo]; }; + Barycenter = derive2 { name="Barycenter"; version="1.3.1"; sha256="0yhc0wwjqms569gnm8z2l9hgcbw8lyy437ynkij47pa4c1a1qvjy"; depends=[Rcpp RcppArmadillo]; }; BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.2"; sha256="0zvcpgzhbna6p37jlf57j7mzrvh5xs5w17janmv9v4210cpbzi1q"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; - BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.0"; sha256="0jjw7iqlyasyivssmkwkn97al9k8l6bs57zkjwf7hjrj36jfa4x1"; depends=[curl dplyr quantmod rvest stringr tidyr XML]; }; + BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.1"; sha256="1mc35y3zxmijgywfd1qhvlpb66rzc8n6j3ynvfrg5c7z8j8592h3"; depends=[curl dplyr quantmod rvest stringr tidyr XML]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.7"; sha256="035658marnw57p4f38g99rwmvmb6hpbq0fhlxp3qbw22zfnnkvs9"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; BatchMap = derive2 { name="BatchMap"; version="1.0.2.0"; sha256="0v3k4xrmsbyhzgmph8xna11dgpp10yxqmss95asrj6n814jxj19b"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; BayClone2 = derive2 { name="BayClone2"; version="1.1"; sha256="1wprdj22zh8fwqawcv4m2n2y7sqwh2f6m9b0cq0rp4ll774yz30i"; depends=[combinat]; }; BayHap = derive2 { name="BayHap"; version="1.0.1"; sha256="0xqnl2cbf0pyjlpywyy0j4mwknfn8msz4s719dsri3r7hvn9m6kd"; depends=[boa]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; - BayLum = derive2 { name="BayLum"; version="0.1.1"; sha256="1qgpn7blazgb1mkjcnn8x0j7z3k6vgcqpg0vm4gg4r4pxyw61b9n"; depends=[ArchaeoPhases coda hexbin Luminescence rjags]; }; + BayLum = derive2 { name="BayLum"; version="0.1.2"; sha256="172ynm4z1m8dc954q4x9vwc2lyxqbwmqaxmz8v49jm8r2ifv7h8c"; depends=[ArchaeoPhases coda hexbin Luminescence rjags]; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; BayesBD = derive2 { name="BayesBD"; version="1.2"; sha256="10ik2lndqgmy6pvdm6cx4fsxgjb2fgi6hlz5ic35ab7fkpi90ka5"; depends=[jpeg mritc png Rcpp RcppArmadillo shiny]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; @@ -320,9 +322,9 @@ in with self; { BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; BayesESS = derive2 { name="BayesESS"; version="0.1.12"; sha256="18dhswny8idj2wqpa66amz1yqk8yhk1vwazj4p70pk8jnpg8cdfy"; depends=[dfcrm LaplacesDemon MASS MatrixModels MCMCpack Rcpp RcppArmadillo RcppEigen]; }; BayesFM = derive2 { name="BayesFM"; version="0.1.2"; sha256="0fiw2x29cpv3prywsbvs1m8a588s2wpi3bwzzjisi2rafbl619xd"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; - BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-2"; sha256="17zfs8bmzp59zaxzcrzis2sxdnqxrv9h1kpb22112mp9l1alvwl4"; depends=[coda gtools Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; + BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.2"; sha256="1z083v7is21gm0a458jm5ph3xfdm7mh29a6sg2r1njq82f8x3s3g"; depends=[coda gtools hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; }; - BayesGOF = derive2 { name="BayesGOF"; version="3.0"; sha256="15699lms3g9j9fwc6lng0bg1yngz18pvmvxwaqg8258qjwc79xlx"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; + BayesGOF = derive2 { name="BayesGOF"; version="4.0"; sha256="10y36qyp674kgw08wrb6drd942314frw4ilkwna6qg6nqh07jzbk"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; BayesH = derive2 { name="BayesH"; version="1.0"; sha256="0mjd1i3rkhyq3qcalq0ing0ap0igbhyvczaihl4pcfidgs70bci3"; depends=[]; }; BayesLCA = derive2 { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[coda e1071 fields MCMCpack nlme]; }; BayesMAMS = derive2 { name="BayesMAMS"; version="0.1"; sha256="1qq3j9nm0k58gpyfavz77v1dwghy8pmpk0v52cj7l8sb3a3aiinm"; depends=[mvtnorm]; }; @@ -334,7 +336,7 @@ in with self; { BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; }; BayesS5 = derive2 { name="BayesS5"; version="1.30"; sha256="1nx61sq1d20238hbgr9p9hrmnxsxpsjhnb4sdhmqg1m7klq8qyrw"; depends=[abind Matrix snowfall]; }; - BayesSAE = derive2 { name="BayesSAE"; version="1.0-1"; sha256="09s7f472by689b2b0gahnkhyjriizpsx6r5qa95nf3f4bfqi2cpf"; depends=[coda Formula lattice]; }; + BayesSAE = derive2 { name="BayesSAE"; version="1.0-2"; sha256="1xbx9hr254agpcqs1fl7qi7h19fd2bbmjszn44l566n2svgvxwf5"; depends=[coda Formula lattice]; }; BayesSingleSub = derive2 { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda MCMCpack mvtnorm]; }; BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="1.0-1"; sha256="05mlgyi4fglvjkpqyw3vcjpipqllx37svcb20c1mrsa46m6fm4s7"; depends=[ff mvnfast]; }; @@ -343,20 +345,19 @@ in with self; { BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; }; BayesVarSel = derive2 { name="BayesVarSel"; version="1.8.0"; sha256="1sf18m4p8zaw2s5fv4p9s99n1n0cgzscgfhm5ngkzif43kwz1l6n"; depends=[MASS mvtnorm]; }; - BayesX = derive2 { name="BayesX"; version="0.2-9"; sha256="0p170m8zkaspiah1fdyql9lj9yqg6sl525blzq7wwgx5wx4rvncs"; depends=[coda colorspace maptools shapefiles sp]; }; - BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-0"; sha256="1w5v2z39wm04s1j0vjw7kvgnkgf423qk2yzxdkpf38x47za2wrfh"; depends=[]; }; + BayesX = derive2 { name="BayesX"; version="0.3-0"; sha256="0vgi0yng53x0w18h4n0ygqmcky7jwmk99j4gcv2vwhcmz45s73j0"; depends=[coda colorspace maptools shapefiles sp]; }; + BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-1"; sha256="0l8c6xsyqj09m722hdanr1d9n6a1ps77ybm1jaqmp86bqmq1br03"; depends=[]; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.3"; sha256="1lli3v922cvp1kwg4sllgvm4rnb972anlpl0lklqk3aqi7ff6flw"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard]; }; BayesianTools = derive2 { name="BayesianTools"; version="0.1.4"; sha256="13imh2vc3picfy1ppzfisgkhk2n8w8s0fnhklkni06wz1816h2zd"; depends=[bridgesampling coda DHARMa ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; Bayesianbetareg = derive2 { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[betareg mvtnorm]; }; - Bayesthresh = derive2 { name="Bayesthresh"; version="2.0.1"; sha256="0w26h1ragqcg1i4h7c2y6vd8fig2jb2zrnvvchgg5z2hg9qdplsf"; depends=[coda lme4 MASS matrixcalc mvtnorm VGAM]; }; BaylorEdPsych = derive2 { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; - Bchron = derive2 { name="Bchron"; version="4.2.7"; sha256="13zqwl4a6wg0163c3qnfnxlljh6yndim0qcz617hxka5iib74afs"; depends=[coda ellipse inline MASS mclust]; }; + Bchron = derive2 { name="Bchron"; version="4.3.0"; sha256="1pbm2s2qpha58q5girc9vssanxqv6r65bwxw5fk5dmpgvl4ag3vj"; depends=[coda ellipse MASS mclust]; }; Bclim = derive2 { name="Bclim"; version="3.1.2"; sha256="0dd4fx3rlljj3zb1m8q1bam1bswg497l3y8k0h0mkvjn94b4jbag"; depends=[ggplot2 MASS mclust statmod]; }; BeSS = derive2 { name="BeSS"; version="1.0.5"; sha256="1gq0zfrzkh2cndly7amhjy0qnfb60lsj7izmdlf2m8h7yrcicjzv"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; - Benchmarking = derive2 { name="Benchmarking"; version="0.26"; sha256="00w7a16lhra6rjylyj26q67mvgbc3wa27a2wmiwjz5yh7wdnh193"; depends=[lpSolveAPI ucminf]; }; + Benchmarking = derive2 { name="Benchmarking"; version="0.27"; sha256="0y31l3ddxm16sylw7p6dnv39w9ydjkjn92gi0za7s0vx07mzimxp"; depends=[lpSolveAPI ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="4.1.0"; sha256="13qdcwycppwy9qqc42zi5fz6wg4a47pfczb3nnfj1bdn2drxqw2x"; depends=[coda ergm Matrix MCMCpack mvtnorm network]; }; Bessel = derive2 { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; @@ -364,14 +365,14 @@ in with self; { BeviMed = derive2 { name="BeviMed"; version="5.3"; sha256="01q5pr776ki973bcld20cqpsz9f10bb30vj95da9gbz5af6bvb14"; depends=[Rcpp]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; - BiDAG = derive2 { name="BiDAG"; version="1.1.1"; sha256="1rncjsdyam7dnhd6ccdlvc85nnc79nsifcm24spc05k8rvx1836x"; depends=[pcalg Rcpp]; }; - BiDimRegression = derive2 { name="BiDimRegression"; version="1.0.6"; sha256="1kgrk4xanvxqdq619ha08wwplmsn2xqygx4dziagx48iqfpp1lxj"; depends=[nlme]; }; + BiDAG = derive2 { name="BiDAG"; version="1.1.2"; sha256="076v7p70clk6wc20gr1cf6vi1x01nbi9pn7z51zwwg6i54a7hsr4"; depends=[pcalg Rcpp]; }; + BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.0"; sha256="0k0708z6xn04zjkc4sk15649wji6hl5q4rvd28sz5kbq7z54j1j5"; depends=[Formula]; }; BiG = derive2 { name="BiG"; version="0.1.0"; sha256="1wi2lyj3q1x47cpf1mdm5kqvjlcvbrliym6j5jbmwz7npc910vrb"; depends=[truncnorm]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; BiTrinA = derive2 { name="BiTrinA"; version="1.2"; sha256="0q2wqxj2ipmppilhvq80cnvhnhcp26h422i8ghx26nrkswhx378s"; depends=[diptest]; }; BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.3"; sha256="06cpz4h57mz5vpapgsrc9g67dkkiabp1n6avnccvgcpzjr0zscsw"; depends=[]; }; - BigQuic = derive2 { name="BigQuic"; version="1.1-7"; sha256="1bhi9dilrprgjvqyc2hb4a0y8rm9la0m5lgry9mf184p56z1syzb"; depends=[Matrix Rcpp scalreg]; }; + BigQuic = derive2 { name="BigQuic"; version="1.1-8"; sha256="1kg48jqm62qmz5x0h6fgvd5fs5dvg51x4spsn1q503ag4dqqdjc0"; depends=[Matrix Rcpp scalreg]; }; BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; BigVAR = derive2 { name="BigVAR"; version="1.0.2"; sha256="14vb6nc6bn22dd112sg9zypkchmkv17gnwxs915k0k5vbb9czlr5"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; @@ -379,10 +380,10 @@ in with self; { BinNonNor = derive2 { name="BinNonNor"; version="1.4"; sha256="00405ww9mh910jqww60w7cb8qbjql2jn13m60ly0bnxilg44r0bb"; depends=[BB corpcor Matrix mvtnorm]; }; BinNor = derive2 { name="BinNor"; version="2.2"; sha256="03cggpk9fhndnk9vv5i6fzsq4wjxc5405xxlxg3l9gb618kj437f"; depends=[corpcor Matrix mvtnorm psych]; }; BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.4"; sha256="0qiy0wf9i9r44ycz1jl666nwpsv5yz7vzz1szdy22sk68lz984bv"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; - BinQuasi = derive2 { name="BinQuasi"; version="0.1-3"; sha256="0kxn71kfaldxji1a0zwnkalpjgrvw0jjfqm2f82gvj8cgcn69lgr"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog Rsamtools S4Vectors SummarizedExperiment]; }; + BinQuasi = derive2 { name="BinQuasi"; version="0.1-5"; sha256="1xjkxf625ggfi5nzj8kvb99xmyvva9qbvl0a3szk0aksqhqlikqi"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; }; Binarize = derive2 { name="Binarize"; version="1.2"; sha256="014iagr76y3v7ljn6zlbg1hxwbwdi889bqxa7hwmqrcybnla22ja"; depends=[diptest]; }; BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; }; - BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.1"; sha256="1f4y1mrscy9z87yglbynnsis623ar0gqpda3dfm9isa2z10c24qr"; depends=[expm Formula lmtest numDeriv]; }; + BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.2"; sha256="0la8mi2wadcxwrq882n4zxvihyqkp8m383c28gl9gm4fs8cqwlxi"; depends=[expm Formula lmtest numDeriv]; }; BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioCircos = derive2 { name="BioCircos"; version="0.3.3"; sha256="0l8kd1imb8022n631psm9na0vp502ndn2q7m3mshx9c0mnqsv8n3"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; @@ -390,9 +391,9 @@ in with self; { BioInstaller = derive2 { name="BioInstaller"; version="0.3.3"; sha256="0mr3qyabr4pwz4cjnig5nzbq0hqqd9rmrpnhmgb1gp3c6l013yk1"; depends=[configr devtools futile_logger git2r R_utils RCurl rvest stringi stringr]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioPET = derive2 { name="BioPET"; version="0.2.1"; sha256="0pwkgffm8hlgvpk3dfzskl50kp9b4rnxc8aj119kwrmlfazhhl50"; depends=[ggplot2 gridExtra pROC VGAM]; }; - BioPhysConnectoR = derive2 { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[matrixcalc snow]; }; BioStatR = derive2 { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; }; - Biocomb = derive2 { name="Biocomb"; version="0.3"; sha256="0shhsljg0knfp83b3hrs2c674sqx2348h5m99jhf19jf1i98pf1k"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; + BiocManager = derive2 { name="BiocManager"; version="1.30.1"; sha256="1d7dqmkg6h02x6agc20prj8nkz061pm7f1gqizibsfz13wv5cx6w"; depends=[]; }; + Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; }; BiodiversityR = derive2 { name="BiodiversityR"; version="2.9-2"; sha256="15wa7la36mfr9fi8cahvrkcd5n5gjiar66mj1c1gsaazjwqsfw6n"; depends=[Rcmdr vegan]; }; Biograph = derive2 { name="Biograph"; version="2.0.6"; sha256="0vklqwbifbac3v9ws9fs22yxpqqk5b3m96qzr8j0irnimb5kgh5p"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; }; @@ -407,66 +408,71 @@ in with self; { BlakerCI = derive2 { name="BlakerCI"; version="1.0-5"; sha256="16zj678qzwqih92q19dma7a602d0hif2dhii5hvxdgjymg7hg2bj"; depends=[]; }; BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; }; Blaunet = derive2 { name="Blaunet"; version="2.0.7"; sha256="19p2rqbg44pi0dz2iimjgr69zyrjf0dfsic6spph81dyrri1zyvh"; depends=[cairoDevice ergm foreign gWidgets gWidgetsRGtk2 haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; }; - Blendstat = derive2 { name="Blendstat"; version="1.0.1"; sha256="1riw2g114xar6ix1q97701lbbsgc55c1q73nrdvwm0raicjxhisi"; depends=[lattice MASS]; }; - BlockFeST = derive2 { name="BlockFeST"; version="1.3"; sha256="062x7lrcpkd15j3ar58j1gssbd0h66dym7c004jf0k040dkk0z43"; depends=[BASIX]; }; + Blendstat = derive2 { name="Blendstat"; version="1.0.2"; sha256="04rn5yqkmqrcali75ly476x0dasysbxilynziy48mrm6q3h7xyjy"; depends=[lattice MASS]; }; + BlockCov = derive2 { name="BlockCov"; version="0.1.0"; sha256="102slm6qfhsra5fg2qzwi3ldi4xny596g2cq4csiprpkhl9qwyli"; depends=[Matrix]; }; + BlockFeST = derive2 { name="BlockFeST"; version="1.6"; sha256="0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5"; depends=[BASIX]; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; }; Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; }; - BoSSA = derive2 { name="BoSSA"; version="3.2"; sha256="03m4l77mq1h7vxfwkkp2r9acnbwd46mq85z27iizmwixnh81pgxy"; depends=[ape jsonlite phangorn plotrix RSQLite]; }; + BoSSA = derive2 { name="BoSSA"; version="3.4"; sha256="0sv42gyv5pzn9w6bn1y361mg6x8z9h1mbgyp8yp5wbv3jl6469s6"; depends=[ape jsonlite phangorn plotrix RSQLite]; }; BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; Bolstad = derive2 { name="Bolstad"; version="0.2-38"; sha256="1535cfpn202vb037q027dy51kc4yg5g9mpn4l6x2q1pwrvnnx18f"; depends=[mvtnorm]; }; Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; BoltzMM = derive2 { name="BoltzMM"; version="0.1.1"; sha256="0jb81wn8b5lhvlkpv4rs66qdmryf57n2xmxgwl1qk0n8bfzy8ayi"; depends=[BH Rcpp RcppArmadillo]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; - BoolNet = derive2 { name="BoolNet"; version="2.1.3"; sha256="1s64a46wfp31jsyfdg2m8269qaq7x798y2bj0dyk69di1nxx2daa"; depends=[igraph XML]; }; - Boom = derive2 { name="Boom"; version="0.7"; sha256="1jfy1namnrpnly992jvhv5qiwnj5mdz5vp6f1xglsgd4wf39sfxb"; depends=[BH MASS]; }; - BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="0.9.0"; sha256="05pd55jrbmg3pipc5nhq80g9bk47g4rkjx89q788bz7lzn11gdsn"; depends=[BH Boom]; }; + BoolNet = derive2 { name="BoolNet"; version="2.1.4"; sha256="0jd7nxz09glrv8hb0rwg7xng77hqcskwdp49wsljhgh71di1y5vs"; depends=[igraph XML]; }; + Boom = derive2 { name="Boom"; version="0.8"; sha256="02930f5iw62csbvlz1d4s9nihynjipn1xi60sl5z1hrf75yvm37a"; depends=[BH MASS RcppEigen]; }; + BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.0.0"; sha256="07cgzwcnr3z5qnm1fsc75xh9c61gljgd8s633g336dqls4b7nfan"; depends=[BH Boom]; }; BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; - BootValidation = derive2 { name="BootValidation"; version="0.1.3"; sha256="097s6yd2g6ahc7rrdpzjarmvqajvzfz2dzawm8gijiami0dkfm9m"; depends=[glmnet pbapply pROC]; }; + BootValidation = derive2 { name="BootValidation"; version="0.1.5"; sha256="0whb13gg2zsx8gzwd1f895jai0z2xpfjifdr91kdxmzpsmw78jxj"; depends=[glmnet pbapply pROC risksetROC survival]; }; BootWPTOS = derive2 { name="BootWPTOS"; version="1.2"; sha256="1860l11xg7444l3x42rq3636csla23gg0mi5in1zibjwn1ddc202"; depends=[fractal wavethresh]; }; Boruta = derive2 { name="Boruta"; version="5.3.0"; sha256="181ldma4rfd14bnq5prhhsjji1hpr4jmn69b017cs08w7k0nqdi9"; depends=[ranger]; }; BosonSampling = derive2 { name="BosonSampling"; version="0.1.1"; sha256="0wxn12h903a0mlrkrr3w4qd9ld2a4bifs95i98cnl2dsb76rwf12"; depends=[Rcpp RcppArmadillo]; }; + BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="5.9.2"; sha256="0cyhqglz0mhfi8yk3a1qdry5ljd8rjzayqj1hyw44w9b8xsm6659"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.0-8"; sha256="09c6zdzf5k5x7zv5m6ygl4k5xbprlpb6s3lrq432mmv8rn2yi58z"; depends=[brglm gtools lme4 qvcalc]; }; BradleyTerryScalable = derive2 { name="BradleyTerryScalable"; version="0.1.0"; sha256="0g12fkfs2sykyd6fzf924zv8gj2js452c4pf0pz2p6156chwrk8c"; depends=[dplyr igraph Matrix purrr Rcpp RcppArmadillo]; }; - BrailleR = derive2 { name="BrailleR"; version="0.26.0"; sha256="1grqs3sb1xk28vmpcbidb6s805wqzkrrx41qqz7jc5y8vpspba51"; depends=[devtools extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest pander rmarkdown XML xtable]; }; + BrailleR = derive2 { name="BrailleR"; version="0.28.0"; sha256="0hg3858aa9zr68rd7xdc1kjapdfp5lgy8rx07qd3brljnhjaxxsz"; depends=[devtools extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest reticulate rmarkdown whisker XML xtable]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; - BreedingSchemeLanguage = derive2 { name="BreedingSchemeLanguage"; version="0.9.4"; sha256="0d51i3dpdfay3562b87la0731jfc5bq5d04mxs1qdrzw6p69ijvn"; depends=[ggplot2 lme4 Matrix Rcpp rrBLUP snowfall]; }; + BreedingSchemeLanguage = derive2 { name="BreedingSchemeLanguage"; version="0.9.5"; sha256="0hw9a3d2wqngvw17bgiwl7l9pn0f7pn8v3da6zz4gpf986pk8blq"; depends=[ggplot2 lme4 Matrix Rcpp rrBLUP snowfall]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-5"; sha256="1ly9fx6mmiwrni52li0c23amsh4k36zjv9h5432igf0fgldhr3pq"; depends=[]; }; BrownDog = derive2 { name="BrownDog"; version="0.2.1"; sha256="0wnf1jcf4cakbvj9j1l7jk9mq7gd4j1il1ha2vglghqn04f27938"; depends=[httpuv jsonlite RCurl]; }; - Brq = derive2 { name="Brq"; version="2.0"; sha256="0j6d1m2drzy1wyr5y25qb8gs6555vh0lkyh415kw17x9dj4ks0zx"; depends=[]; }; + Brq = derive2 { name="Brq"; version="2.1"; sha256="0my9sb0761nq1ivx31k7nwpg8xidqvd0zv3lan57hnsmn7d1i7a9"; depends=[]; }; Brundle = derive2 { name="Brundle"; version="1.0.8"; sha256="1yj196x6xb75qgi16pgg3dyjmxmjklfjcpxymaki32drhmylf24z"; depends=[DESeq2 DiffBind lattice Rsamtools]; }; BsMD = derive2 { name="BsMD"; version="2013.0718-1"; sha256="06w1dl5zp1cgjhk3m2zz6xsmcfwdk6ar3gmxdn96v71mqnhv81v1"; depends=[]; }; BullsEyeR = derive2 { name="BullsEyeR"; version="0.2.0"; sha256="1p8b5w818zi7zs0n13cc3sw8z0z9mfr5cn5y5icsx1jam5amppci"; depends=[Matrix NLP slam tm topicmodels]; }; BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; - BusinessDuration = derive2 { name="BusinessDuration"; version="0.1.0"; sha256="0bx147qcf44q2bpl4rcyps18vk2dawcgn7870j8ljc8d86lqnvqd"; depends=[chron]; }; - BuyseTest = derive2 { name="BuyseTest"; version="1.0"; sha256="1nfj2ajah2dg1p47g2z0zf9s24sxj4dfn3nny1h4qmqwcb4vs55g"; depends=[data_table lava Rcpp RcppArmadillo snowfall survival]; }; - C50 = derive2 { name="C50"; version="0.1.1"; sha256="1pq1plsh7kf45f0ghrja0xjikaxgvq14k8k80ml5rkabyv11zg03"; depends=[Cubist partykit]; }; + BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; + BuyseTest = derive2 { name="BuyseTest"; version="1.3.2"; sha256="1wdc2w8pdjnsj2hn902zrn6d734d9y4l4cfxd4hq1m1n7ly6gnnk"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; }; + C443 = derive2 { name="C443"; version="1.0.0"; sha256="0d04769m9kkjqpj1cgfhqrri893nwi6qn7fz63z5pkym5cig5yyi"; depends=[cluster ggplot2 gridExtra igraph MASS partykit qgraph RColorBrewer reshape2 rpart]; }; + C50 = derive2 { name="C50"; version="0.1.2"; sha256="1fpspmsm62h077dkdhii23bs3sxlblabfqj4waz794ihw1b9hicg"; depends=[Cubist partykit]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; - CAISEr = derive2 { name="CAISEr"; version="0.2.1"; sha256="1y070r50vhs5ri91zw28wr8nkiq15n9dpjggi6hs601a0bj7463v"; depends=[assertthat]; }; + CAISEr = derive2 { name="CAISEr"; version="0.3.0"; sha256="00jj01hyk86f90b8krl3k8pfh98blhq6vmvnizwwhrmkzy7d7bbj"; depends=[assertthat pbmcapply]; }; CALF = derive2 { name="CALF"; version="0.2.0"; sha256="12w1vr0rk6m4lv6zvqrf45k81d301ln1253wyy9xi6mv1hkabg0v"; depends=[ggplot2]; }; - CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="0.1-6"; sha256="036nwnday098mawc9qlgl3jjjcdjnja1immg6xkq27hvv2xfbz82"; depends=[mice mvtnorm randomForest]; }; + CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-1"; sha256="1xsnqyj0qdi081rdnpas9ciy9zbhdcjx3lphl6drk0bbmik3znkv"; depends=[mice mvtnorm randomForest]; }; CAM = derive2 { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; }; CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; - CANSIM2R = derive2 { name="CANSIM2R"; version="0.12"; sha256="1r8fln9rqjsqhbnxvng9wpdnp6mb1gxlq3qkff4q2wbhf18wwn7w"; depends=[Hmisc reshape2]; }; + CANSIM2R = derive2 { name="CANSIM2R"; version="1.12.0"; sha256="12wnbgrcx9373n5n5wm6scsw8aq1jfrjzfh2f38asn7sxm3ky6ri"; depends=[downloader Hmisc reshape2]; }; CARBayes = derive2 { name="CARBayes"; version="5.0"; sha256="0kii28mf75m7ij1l0bz2w93h7m1wwq1xjvv3d3nf3ps9h8rxzi8d"; depends=[CARBayesdata coda MASS matrixcalc MCMCpack Rcpp sp spam spdep truncnorm]; }; CARBayesST = derive2 { name="CARBayesST"; version="2.5.2"; sha256="0jww40ghcfiq7laprdicynn1m34ykz9l9navi9rdx8p8d7k76ykc"; depends=[CARBayesdata coda dplyr MASS matrixcalc Rcpp sp spam spdep testthat truncdist truncnorm]; }; CARBayesdata = derive2 { name="CARBayesdata"; version="2.0"; sha256="0mlqlqm50k4lqyvbjva7vji9jqa3rwi5ky5521rp5l4nqlj53sfb"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; - CARRoT = derive2 { name="CARRoT"; version="0.1.0"; sha256="1zwc59pf0wpd9hy2apx723plag3dmas39sn7rf1cfkn7h9dm27iz"; depends=[doParallel foreach nnet Rdpack]; }; + CARRoT = derive2 { name="CARRoT"; version="1.0.0"; sha256="1xcvyk9id3scr629n7f3b1hxzfk5947n22s1hwdwi4njf3p7s67f"; depends=[doParallel foreach nnet Rdpack]; }; CARS = derive2 { name="CARS"; version="0.2"; sha256="1n8p4n9fbl20jps9g9pbspw54hq9y6kqbggc8h0i9pbm1b25ngrg"; depends=[np]; }; CARrampsOcl = derive2 { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; }; - CAST = derive2 { name="CAST"; version="0.1.0"; sha256="0mihpcknwk86m41x14j2g3f2s2ya20sh99ng85rcph57a4v6ar05"; depends=[caret]; }; + CASMAP = derive2 { name="CASMAP"; version="0.5.9"; sha256="1rhvc44ngcvwlp12iawry5i4fmdkb1waldb0x3diw3jssim3n6mq"; depends=[Rcpp]; }; + CAST = derive2 { name="CAST"; version="0.2.0"; sha256="01n4sdk6gsjz2g157h4y04rwkjxwzzsia3pqs0slnmvmf4yzr0b4"; depends=[caret ggplot2]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.0"; sha256="0mklkmay9ph4d0z2l1gcg0lj429xkyhmz7srdil5rgwqxx9dnqs8"; depends=[]; }; - CATkit = derive2 { name="CATkit"; version="3.2.3"; sha256="1vl60m6x3mqgghqzpxq8aalpjpcagamjk5zg62mqpwx0vgdwv2fy"; depends=[assertr magic MASS png rtf season signal]; }; + CATkit = derive2 { name="CATkit"; version="3.3.2"; sha256="1yyz3dc9r2dn16q745374dpwgf56880kv0yg35h6dhmrya3xrprm"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; }; CAvariants = derive2 { name="CAvariants"; version="3.4"; sha256="1mrqvcgnxbzah7vhqqqdygds8plwswd2l8w0aq5132byhhc4kiax"; depends=[]; }; CBCgrps = derive2 { name="CBCgrps"; version="2.1"; sha256="0cvgcpvdvpvjkzkwapx0y4a666xq54dwm00w4w9n8fhgp05mnkn8"; depends=[nortest]; }; CBDA = derive2 { name="CBDA"; version="1.0.0"; sha256="0qm77vvqjgi83i8izly995ziv9ski8kgzqyq4g81i2k7a5dp8vxv"; depends=[doParallel foreach prettydoc SuperLearner]; }; - CBPS = derive2 { name="CBPS"; version="0.18"; sha256="0dd63s9nrgra51w005j35scbswbknqgv9ppawh0311hpr7anrir9"; depends=[glmnet MASS MatchIt nnet numDeriv]; }; + CBPS = derive2 { name="CBPS"; version="0.19"; sha256="0rb04x8lin5p6h0ziiv2zh98qvah5mkpd3qbgrmhczacavvpb8hl"; depends=[glmnet MASS MatchIt nnet numDeriv]; }; + CBT = derive2 { name="CBT"; version="1.0"; sha256="13h6sf7w03nfq2arqymwww13ywnv9xnqbqazlzn856mj3ggaqda7"; depends=[]; }; CCA = derive2 { name="CCA"; version="1.2"; sha256="00zy6bln22qshhlll0y0adnvb8wa1f7famqyws71b6pcnwxki5ha"; depends=[fda fields]; }; CCAGFA = derive2 { name="CCAGFA"; version="1.0.8"; sha256="1jxb6d1h5p97wnr45s1fsspksqn771nib415ihxi4vj5w8s94j8b"; depends=[]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; @@ -474,11 +480,10 @@ in with self; { CCP = derive2 { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; }; - CDECRetrieve = derive2 { name="CDECRetrieve"; version="0.1.0"; sha256="059pppiczvnfm4shyac6myzbq1vyz2pl7mxq225sy9ppdf813y61"; depends=[dplyr httr lazyeval lubridate magrittr purrr readr roxygen2 rvest stringr tibble tidyr xml2]; }; - CDF_PSIdekick = derive2 { name="CDF.PSIdekick"; version="1.2"; sha256="1h2d5xh7zj3d8r63qndvd5c8z52byn1852b51zmj6ypc90fil25x"; depends=[Rcpp]; }; + CDECRetrieve = derive2 { name="CDECRetrieve"; version="0.1.1"; sha256="0rxwsyr2j35f52vzpg5v4jn5qi72xn1gbqxnpsfn8c6hhmqdfjwz"; depends=[dplyr glue httr lazyeval lubridate magrittr purrr readr roxygen2 rvest stringr tibble tidyr xml2]; }; CDFt = derive2 { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; - CDM = derive2 { name="CDM"; version="6.1-10"; sha256="00c25k4hliqc4w15njasp0azsyy1x13h7y3kh1b9dl3qkpqs5r2z"; depends=[MASS mvtnorm polycor Rcpp RcppArmadillo sfsmisc]; }; + CDM = derive2 { name="CDM"; version="6.3-45"; sha256="159ahd17ddv0y78xrfrm1zdq5wfwav4jc26b41wd23zli1ljnlj5"; depends=[MASS mvtnorm polycor Rcpp RcppArmadillo sfsmisc]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVine = derive2 { name="CDVine"; version="1.4"; sha256="0cp78pb6yny4n5q2j9k6xdql588536572gbphnw8zkdmrg65qyz7"; depends=[igraph MASS mvtnorm]; }; @@ -488,9 +493,8 @@ in with self; { CENFA = derive2 { name="CENFA"; version="0.1.0"; sha256="1bxrqvi67s93mvkbigb8l7rrn2j2ix7qw7vcxf4dbwd7xf3qqv6q"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFC = derive2 { name="CFC"; version="1.1.0"; sha256="0yhb314qcdxig5vg0nbzvsqiddlsqlm50vzddhpp0z5n3xfa7h2c"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; - CGP = derive2 { name="CGP"; version="2.0-2"; sha256="1mggv3c8525vbdfdc3yhpp4vm4zzdvbwyxim29zj0lzwjf9fkgqk"; depends=[]; }; - CGPfunctions = derive2 { name="CGPfunctions"; version="0.1"; sha256="0zsvhhp5pgqrn518c1cmmxama1cadg7grscimz08cclzidcqq0w1"; depends=[car dplyr ggplot2 rlang tibble]; }; - CHAT = derive2 { name="CHAT"; version="1.1"; sha256="1hl4xr4lkvb7r36gcbgax6ipqc3rsvn1r03w7fk9gf9bbyg7bkhg"; depends=[DNAcopy DPpackage]; }; + CGP = derive2 { name="CGP"; version="2.1-1"; sha256="05a6gydlb99yk2jpy2hyg4c30hqyp8dg2i9dmbjc1n5cmgpg3im9"; depends=[]; }; + CGPfunctions = derive2 { name="CGPfunctions"; version="0.4"; sha256="05rfv923bisg8270vc6hnh3sb1fldbyqwdwj7xqghbvcrgch2b4k"; depends=[car devtools dplyr ggplot2 ggrepel rlang scales tibble]; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; }; @@ -500,18 +504,19 @@ in with self; { CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CINID = derive2 { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; }; - CINNA = derive2 { name="CINNA"; version="1.1.4"; sha256="0wq7kiycx4ly6pm9f81g0wjzrhb123zzflsx7mnxs7lc77ga2h2b"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; - CINOEDV = derive2 { name="CINOEDV"; version="2.0"; sha256="0fjpxahc55zd972p3hlw9fk4dq8hpq715xff8p98kfh29dvw9mnz"; depends=[ggplot2 igraph R_matlab reshape2]; }; + CINNA = derive2 { name="CINNA"; version="1.1.41"; sha256="1s0hcqikb02xnz6kw4aapl5dw6p1dksjnr3yhhnfw6wibbkls1hc"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; CITAN = derive2 { name="CITAN"; version="2015.12-2"; sha256="08h91q7529q04izgqw3ahm4r0zjpwnwyc0vynykvv9fz2fkbk7wb"; depends=[agop DBI hash RGtk2 RSQLite stringi]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; + CJAMP = derive2 { name="CJAMP"; version="0.1.0"; sha256="0kvmb8vh3dfhdavmvkfmr8293p5lgjws6p7kzmc7r9h6bzmc2hcr"; depends=[optimx]; }; CLA = derive2 { name="CLA"; version="0.90-1"; sha256="1rpklm21i9rjw0vfhaz9brq9571yjynwfhpv6dp6fbl3cj7bwb8g"; depends=[]; }; - CLME = derive2 { name="CLME"; version="2.0-9"; sha256="11kwk3v5kbk1k2gsglpvlq6nyh0b0qd97jpqcv1s2swx12pzdxqc"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; + CLME = derive2 { name="CLME"; version="2.0-10"; sha256="1jlib4pi3ifhfwmvd1jj4kkl6npirykhz0wlvv19nvhf3514y04s"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; }; CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; }; CMF = derive2 { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; }; + CMLS = derive2 { name="CMLS"; version="1.0-0"; sha256="1542qqsl6sksrcpwhnn55d260hkbmy4ikd0v2an96yxk5w95spvn"; depends=[quadprog]; }; CMPControl = derive2 { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; - CMatching = derive2 { name="CMatching"; version="2.0"; sha256="0g8hiag51cqj0wy7lbaa5x4xbnyb74s5xiws6pwxhrvbp3ym69bs"; depends=[lme4 lmtest Matching multiwayvcov]; }; + CMatching = derive2 { name="CMatching"; version="2.1"; sha256="172b5pzs6z8rdziqn1cq0s4zcr5hd2ql3wjslf6rv7zn9afkmjdr"; depends=[lme4 lmtest Matching multiwayvcov]; }; CMplot = derive2 { name="CMplot"; version="3.3.1"; sha256="01qpy7bb3503i3b8v4psrxbx9ff5vzcv54j55mdr1bphwmnp1kzq"; depends=[]; }; CNLTreg = derive2 { name="CNLTreg"; version="0.1"; sha256="1fjc45kv2nm902vpfynfxj0n7nm2prazm44nhg2m30vd6l1ijisv"; depends=[adlift miscTools nlt]; }; CNLTtsa = derive2 { name="CNLTtsa"; version="0.1"; sha256="0s98ckg6ms3kh49b8la2d8rsdb0m4m0v8gdbj48nqxncdvg25qk4"; depends=[adlift CNLTreg fields nlt]; }; @@ -522,7 +527,6 @@ in with self; { COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; - COMBIA = derive2 { name="COMBIA"; version="1.0.5"; sha256="0f4p2gb16bb46jcdmzlaaicymqnw18c7qc39m0s5jwps4c8whyym"; depends=[gdata hash lattice latticeExtra oro_nifti]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.4.1"; sha256="14gjrf2hj7dy4hd0qnh6vqjzh7gc6g7gm7rh1d8dingkjwmjzrqb"; depends=[]; }; CONDOP = derive2 { name="CONDOP"; version="1.0"; sha256="0si9nm93wk9lif3r6jh2nxr4sjq1iqyfavbykja3zcy6yn05i19s"; depends=[earth GenomeInfoDb GenomicRanges IRanges mclust plyr randomForest rminer S4Vectors seqinr]; }; CONS = derive2 { name="CONS"; version="0.1.1"; sha256="0w0rca4z3hij0lbabpdnhv2lb52gx574g7bqp6q16772pi4685hf"; depends=[FactoMineR gridExtra gWidgets pander raster readxl REdaS]; }; @@ -535,40 +539,46 @@ in with self; { CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPBayes = derive2 { name="CPBayes"; version="0.3.0"; sha256="1vzh9sgij194j7kiwjgba7xsqffiif9zamj9gdv2lk91wdcqaxid"; depends=[forestplot MASS]; }; CPE = derive2 { name="CPE"; version="1.4.4"; sha256="09sqp2a0j43jr9ya9piv8575rwd5fdvwmiz4chv75r3mw8p128mn"; depends=[rms survival]; }; - CPHshape = derive2 { name="CPHshape"; version="1.0.1"; sha256="05krqcd4spgghp3ihv1zfql6ikd64vkqnrjghjvfki3hi3zi5k7h"; depends=[]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; + CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; }; CPsurv = derive2 { name="CPsurv"; version="1.0.0"; sha256="1r68pp3jbcbwgfac132h30qx6ah780aychr49rlncn17xbdalxsh"; depends=[muhaz survival]; }; CR = derive2 { name="CR"; version="1.0"; sha256="0smb2i560dwbxg3mp1svfxmaiw193pd3klwqq0i27czf07k1xfvj"; depends=[]; }; CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; }; CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; }; - CREAM = derive2 { name="CREAM"; version="1.1.0"; sha256="09mmfcgh5vfh4hq9vgsr1qsph7qq4w555j1j7zjcq69cfabp0np9"; depends=[]; }; - CRF = derive2 { name="CRF"; version="0.3-14"; sha256="0xhjj76730yjlpwbhcpdzqp7s37a9rhf4adk1s7hfb0jm8b76fgh"; depends=[Matrix Rglpk]; }; + CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; }; + CRF = derive2 { name="CRF"; version="0.3-16"; sha256="1vw8gkrhymqi7x3p257k8vvn4df4s16w8hhm1myzhcp6bf44jqg4"; depends=[Matrix]; }; CRM = derive2 { name="CRM"; version="1.1.1"; sha256="09h6xvqc2h2gxhdhc7592z93cnw16l549pn9i26ml0f0n20hljmf"; depends=[]; }; - CRPClustering = derive2 { name="CRPClustering"; version="1.0"; sha256="1mr6wcfsgl3x9dx3sx1iav1i82r70jn985y7jkmvip0h9xslrk7g"; depends=[MASS mvtnorm png randomcoloR]; }; + CRPClustering = derive2 { name="CRPClustering"; version="1.2"; sha256="19m7jg6ck2gqmry2p35h3vv8msm4w1x7qwwmm746r646q7w9ylml"; depends=[dplyr lucid MASS mvtnorm png randomcoloR]; }; CRTSize = derive2 { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; }; CRTgeeDR = derive2 { name="CRTgeeDR"; version="2.0"; sha256="1fzw8618k152b8d4d6wmzp0bfkz2grwp0rqsplwvfdx23nxq437n"; depends=[ggplot2 MASS Matrix]; }; + CSESA = derive2 { name="CSESA"; version="1.0.4"; sha256="05nijz8x5sgmc4aykxsqg2i1n50zx0kd5lqi5a1fwxbx2miw27sv"; depends=[Biostrings]; }; + CSFA = derive2 { name="CSFA"; version="1.1.0"; sha256="0dqva3i4jhlbjmqwngxqgl6prfs3cxb219jqc7yvjjk8n4nz8jim"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; + CSeqpat = derive2 { name="CSeqpat"; version="0.1.1"; sha256="1vgwkiin485n3bks09bg4ricjfw1l8k5qfv7l0xp50zha3r18g1y"; depends=[NLP tm]; }; CTM = derive2 { name="CTM"; version="0.2"; sha256="0h1lpygjq46nwkn4km49bngvxmgrnh3csrfln3yjr9yyzs7d3lz1"; depends=[jiebaR plyr]; }; + CTRE = derive2 { name="CTRE"; version="0.1.0"; sha256="1v2327g78rva3n7lvn66rznzzf2qbdak0jp8gakgljpl30kpkv5v"; depends=[assertthat MittagLeffleR plyr tea zoo]; }; CTT = derive2 { name="CTT"; version="2.3.2"; sha256="1f4ba2qnxx5vlj64sxz4ynby9hv7f32v6ls8yn887z51m33xdxi8"; depends=[]; }; CTTShiny = derive2 { name="CTTShiny"; version="0.1"; sha256="1c9vsiqyig6kfjpy3dfrysc466h4v9530m49aynz65i1njplswyh"; depends=[CTT ltm psych shiny shinyAce]; }; CUB = derive2 { name="CUB"; version="1.1.2"; sha256="031jkzh6cr8gd2naqv54xs3vlrqmcbl9d2in66kd0dr2i41l3qj7"; depends=[Formula]; }; - CUFF = derive2 { name="CUFF"; version="1.4"; sha256="01lx4ds1rlh7vndv13s11mhhamgsbqnsqjgd44iryfl3jmy3xfz3"; depends=[openxlsx xtable]; }; + CUFF = derive2 { name="CUFF"; version="1.5"; sha256="1cphwhimzmsljfjvfvpld4mixznlsg5azzv7dwrgnh8q4wpnaxpc"; depends=[openxlsx xtable]; }; CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; }; CUSUMdesign = derive2 { name="CUSUMdesign"; version="1.1.3"; sha256="149d16d5y7zxkzq8gmb5spfrvirv0vyhk2qx0v7vclkr8adz9sva"; depends=[]; }; CVD = derive2 { name="CVD"; version="1.0.2"; sha256="0agb0liwbp4wvmxbyxgfb7471ki1agfb6ssh77kvwbkxqmrc8d96"; depends=[]; }; CVR = derive2 { name="CVR"; version="0.1.1"; sha256="1y8m9r409jq5h6xx1rvz7c7aj882jldfxly89zf3cvp2qg3jh7rj"; depends=[PMA Rcpp RcppArmadillo]; }; - CVST = derive2 { name="CVST"; version="0.2-1"; sha256="17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"; depends=[kernlab Matrix]; }; + CVST = derive2 { name="CVST"; version="0.2-2"; sha256="05l3yzkfrbds09ah9cdwn2sn4ryhq78lz33ryzrgkv176jc8qjw5"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[EbayesThresh wavethresh]; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; - CVXR = derive2 { name="CVXR"; version="0.95"; sha256="1sf8n27w7dlix55bc5rdrrn361yc6xslwykd1vj51zh908c5as1w"; depends=[bit64 ECOSolveR gmp Matrix R_utils R6 Rcpp RcppEigen Rmpfr scs]; }; + CVXR = derive2 { name="CVXR"; version="0.99"; sha256="1by7jgy70wbf1bvskxi1l3lfkcl6cbigk64ncb2g8h2c974wn9pi"; depends=[bit64 ECOSolveR gmp Matrix R_utils R6 Rcpp RcppEigen Rmpfr scs]; }; CVcalibration = derive2 { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; }; + CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; Cairo = derive2 { name="Cairo"; version="1.5-9"; sha256="1x1q99r3r978rlkkm5gixkv03p0mcr6k7ydcqdmisrwnmrn7p1ia"; depends=[]; }; - Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.2"; sha256="07g7ik3xb9ijghkz94qyk87c2d4q942h4d0yicwr1j1xzcv5qzsw"; depends=[]; }; + Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; }; CaliCo = derive2 { name="CaliCo"; version="0.1.0"; sha256="1fz4sx6wsrkmcfjjgjn7z26m266m844qz8ms4vk6bnhx0h1rp6qa"; depends=[coda DiceDesign DiceKriging FactoMineR ggplot2 MASS Matrix R6 Rcpp RcppArmadillo testthat]; }; CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.0"; sha256="1r3318rzh29cgq72gdp16z60xkan7hyh1vj4gjg3pzbxy8zawqxx"; depends=[survey]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="1.3"; sha256="1a8ic2ny2zkqy6xsnzhlc3hybhk200d8jbdbjfy7jav7n757kr0y"; depends=[]; }; + CaseBasedReasoning = derive2 { name="CaseBasedReasoning"; version="0.1"; sha256="0hwll17j0br8sr0ci3bfa5rx4r36hr7myq7b5fav664zjxdh9wr4"; depends=[cowplot data_table dplyr magrittr R6 ranger Rcpp RcppArmadillo RcppParallel rms survival tidyverse]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; CatPredi = derive2 { name="CatPredi"; version="1.1"; sha256="1fqz2mb3xhpzvamf0bpqfql3vd86vq6fq7n6p8xq7lraj1w77lys"; depends=[CPE mgcv rgenoud rms survival]; }; @@ -577,8 +587,7 @@ in with self; { CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; CausalImpact = derive2 { name="CausalImpact"; version="1.2.3"; sha256="16qwf1kcs7x6qw18zpabs4zsv3m7xwxixf89krnipydiwlpxjjn6"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; Causata = derive2 { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[boot data_table foreach ggplot2 glmnet R_utils RCurl rjson RMySQL stringr XML yaml]; }; - CePa = derive2 { name="CePa"; version="0.5"; sha256="1y2q72j8bqx509i62a2x9j40rj5bkpgx4z6fwj05ibazc1441asd"; depends=[igraph snow]; }; - CellularAutomaton = derive2 { name="CellularAutomaton"; version="1.1-1"; sha256="0kmw2ic161xwalqa63hznic4n4hdz20hsilf2awlcldg7m9si1zd"; depends=[R_methodsS3 R_oo]; }; + CePa = derive2 { name="CePa"; version="0.6"; sha256="1qpxx9x656g678wp190q29vxkb54sfkalg0csg0ndlcvi03dvl3d"; depends=[graph igraph Rgraphviz]; }; CensMixReg = derive2 { name="CensMixReg"; version="3.1"; sha256="1r7w84bjdxnkhiw7gh499scc6m3ba9b2a8cwayn6sg5a524yn9gs"; depends=[ClusterR mixsmsn mnormt mvtnorm trimcluster]; }; CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; }; CensSpatial = derive2 { name="CensSpatial"; version="1.3"; sha256="0gd1c5qlk71avv0s3jqwb00h9cm6djg9qwzc1znc3kh61wx9kvfi"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster tmvtnorm]; }; @@ -587,9 +596,9 @@ in with self; { CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; - ChainLadder = derive2 { name="ChainLadder"; version="0.2.5"; sha256="0023qbwyrb6vifsllws9jj1hlylmglzfc339d5rg8nhb50i4v6fd"; depends=[actuar cplm ggplot2 lattice MASS Matrix reshape2 statmod systemfit tweedie]; }; + ChainLadder = derive2 { name="ChainLadder"; version="0.2.6"; sha256="0mpb7br76ng3m9g4ncx2g628zmjyf1rvi3lyxmfsmilpq6vh30n1"; depends=[actuar cplm ggplot2 lattice MASS Matrix reshape2 statmod systemfit tweedie]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; }; - ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.12"; sha256="0iz40xbkcjlydxnlm437iiy3pb8viqym6bwimhbjvm2v3dq5p8h5"; depends=[Rcpp RcppArmadillo]; }; + ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.13"; sha256="1nkz8n3a6f0xl56py45pv0rp0n0kmz3a1m616w38mjjlcypdalwq"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.1"; sha256="0qy92ij1riynz7dhri3z85pafww5w9j1gx1bcgr8phlr32a7had7"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; Chaos01 = derive2 { name="Chaos01"; version="1.1.1"; sha256="0ibxibmlyc6wkhqj2achwkwdkniin60y8xh8b80nq6ggmm7w9crw"; depends=[]; }; ChaosGame = derive2 { name="ChaosGame"; version="0.3"; sha256="0nfp2qnhzpncs0yd5rknspin6c4hidqhxdd973ysiivg63wxwz8d"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; }; @@ -598,37 +607,37 @@ in with self; { CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; ChemoSpec = derive2 { name="ChemoSpec"; version="4.4.97"; sha256="0kdcwv9kncv2r5mabp0mf9bmnajcnxmqavrl2lpn3d2pji6pv1qq"; depends=[plyr]; }; ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.11"; sha256="00z09bplm5qvd31y7m4b4knsrl0n27j9635m1gdak6lg4db4nxrd"; depends=[devtools kohonen MASS pls]; }; - ChoR = derive2 { name="ChoR"; version="0.0-3"; sha256="085p604zbk4l88q4ig2fnfhadxvsssyjl2r48g8s99yx49cvd9sx"; depends=[commonsMath rJava]; }; + ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; }; ChocoLattes = derive2 { name="ChocoLattes"; version="0.1.0"; sha256="0ircdar4fswaf34969gzgn83ia891jvwl29jn4s9a87cc4qagzgr"; depends=[ggplot2 knitr plotly R_utils rmarkdown WriteXLS XML]; }; ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; CholWishart = derive2 { name="CholWishart"; version="0.9.2"; sha256="1dlq6a9j3ifhmw94w158czc72f31rns0xfw4zbfx4zcah678raq6"; depends=[]; }; - CircE = derive2 { name="CircE"; version="1.1"; sha256="14bja3zv9wg389m6khmsy3q12hhnfcp49rvrmw47y6fh5m7ihrz2"; depends=[]; }; CircMLE = derive2 { name="CircMLE"; version="0.2.1"; sha256="031pmfyqwif16am7h1csk1dg9vhy0jgdc8w4z60kqqsgf3yk6il9"; depends=[circular]; }; CircNNTSR = derive2 { name="CircNNTSR"; version="2.2"; sha256="0z29dsvcwpra1ny8kj486dpnrak272wmkfnaiyashzcqpnkmkg03"; depends=[]; }; CircOutlier = derive2 { name="CircOutlier"; version="3.2.3"; sha256="1vyac4mjkn6p4p9n5finqqak6g7m3hj04a66v3w797jn1wbd1xly"; depends=[CircStats circular]; }; - CircStats = derive2 { name="CircStats"; version="0.2-4"; sha256="1f2pf1ppp843raa82s2qxm3xlcv6zpi578zc4pl0d7qyxqnh603s"; depends=[boot MASS]; }; - CircularDDM = derive2 { name="CircularDDM"; version="0.0.9"; sha256="187vq7s8bp822lncv4gi3f98myg8na6cbg92zvdlzbsx50fylipf"; depends=[Rcpp RcppArmadillo]; }; + CircStats = derive2 { name="CircStats"; version="0.2-6"; sha256="07bg4zrs2iqh0pmi44pybi8hlvnxwcaa5zpg85rmf55kflxxkzlf"; depends=[boot MASS]; }; + CircularDDM = derive2 { name="CircularDDM"; version="0.1.0"; sha256="1wxdjj7dndvhvl00cykcrwmw9f7halsg3a0db56kp2mhf54rj37z"; depends=[Rcpp RcppArmadillo]; }; Cite = derive2 { name="Cite"; version="0.1.0"; sha256="1gfjirhswh4dkz88z4gl8m8jznqrvcgd4z3mnszyg1k5w3avlf1q"; depends=[miniUI RefManageR rstudioapi shiny]; }; CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; }; Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.2.1"; sha256="1jx5419r2c55qxh4kfjdm37594bqcalqgdrqihsr8aafxhh96b8z"; depends=[]; }; ClamR = derive2 { name="ClamR"; version="2.1-1"; sha256="0raz1n79g24a9mc93zj49r20xcmdziw6vvcw5sd3qyjp1ycia13c"; depends=[]; }; - ClassComparison = derive2 { name="ClassComparison"; version="3.1.5"; sha256="0h83xf6vwp1wjavsnpcdxc033pyyc68vmghwmcivalcp3kahz6gf"; depends=[Biobase oompaBase]; }; + ClassComparison = derive2 { name="ClassComparison"; version="3.1.6"; sha256="1y0yx3qnd5mkbqjxyfjjg2y0c0b9jjwn71z97h82ya5ci3fffndi"; depends=[Biobase oompaBase]; }; ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.3.7"; sha256="03lp1dbp2mzrzk1hn7nkp7nm1ngs0qndlk3zz7qjh3a67x7xr5p1"; depends=[Biobase cluster mclust oompaBase oompaData]; }; + CleanBSequences = derive2 { name="CleanBSequences"; version="0.4.0"; sha256="12s24v2kfyc32pm34ibw58zzjqhzwlrqrkhl0m70jcqvn50b5r98"; depends=[Biostrings]; }; ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; }; ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="0.1.0"; sha256="1lqf2ksgchl1j5hfkz7r5yczvkjgi3238k8nkfkd70nyil9vjq06"; depends=[Rcpp]; }; CluMix = derive2 { name="CluMix"; version="2.1"; sha256="080gd6v8yj83djmf4wg7cwk6q6w6gsg4xfsgw5qd6z8h3kpyn45m"; depends=[Biobase ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; }; - ClueR = derive2 { name="ClueR"; version="1.2"; sha256="17phjzpdx11sw259xk16h2w28xdaxxpzbh0sxli61icnssw35n7z"; depends=[e1071]; }; + ClueR = derive2 { name="ClueR"; version="1.3"; sha256="04axd5wrh8xszyvm6kcvhr3qs0rx9nj0z99j26qijf5w80lmhaki"; depends=[e1071]; }; ClusVis = derive2 { name="ClusVis"; version="1.1.0"; sha256="17cn3hm37jv10aybaidy89kch6814hdi8g44s94xa9li7nixzass"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; }; ClustGeo = derive2 { name="ClustGeo"; version="2.0"; sha256="1p5k2w1k7hnacbazzj2yhxh4z2jngnsl4v5a9b3c8z1dr4nhcwxc"; depends=[sp spdep]; }; ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; }; ClustOfVar = derive2 { name="ClustOfVar"; version="1.1"; sha256="0grhkab7s58ji4cf7cxh7ahd2dxrj8aqfdf3119b40zxkxbwxcr0"; depends=[PCAmixdata]; }; ClustVarLV = derive2 { name="ClustVarLV"; version="1.5.1"; sha256="11zydj3iq15sg84kny6nklpmh8wj9j9nklkknzfqnaagai8jgsmy"; depends=[Rcpp]; }; Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.1"; sha256="18is8aa496qr7afmyqy12s267ans0hhzy0xs8nzr3qp70mwrbbh1"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr tibble]; }; - ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="0.9.9"; sha256="116rj2ynk37pc5ic6xlnh3gvzl6qasly8avchmwcdsg4w7i2z8l7"; depends=[]; }; - ClusterR = derive2 { name="ClusterR"; version="1.1.1"; sha256="0b9x0a1s0d9nnkkcm417xsaciwb66771s14ir6n6mm7yq1g6x417"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; }; + ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.0.0"; sha256="0m1lfp27vn3ybwimwkrihff5v2bvdc4c46x8bha8hw0wma14lw5i"; depends=[]; }; + ClusterR = derive2 { name="ClusterR"; version="1.1.2"; sha256="04charq9ydxiy8qvign3nc3ksg5v8d7jq39kdx7nndwgyjsidaic"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; @@ -636,17 +645,16 @@ in with self; { CoDiNA = derive2 { name="CoDiNA"; version="1.0.0"; sha256="1anc127d4xx1yks5kq2glcv8sijs0sfab9wjs7j9g1aqp97hmk33"; depends=[data_table geometry igraph magrittr plot3D plyr reshape2 visNetwork]; }; CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; }; CoImp = derive2 { name="CoImp"; version="0.3-1"; sha256="0zj152w4cvnbfl144ggs3ixmyywxf9dqhh04jfydmv2a8n6px89n"; depends=[copula gtools locfit nnet]; }; - CodeDepends = derive2 { name="CodeDepends"; version="0.5-3"; sha256="03p82s0abca2jimzqvxdzykfzca7c7fhm5xsjxybcksr4gggr5sc"; depends=[codetools XML]; }; + CodeDepends = derive2 { name="CodeDepends"; version="0.6.0"; sha256="0gyvafhqrjgy81z3b7ii8p6rxi2zaakvrxb52fnbr616lk8xlmfw"; depends=[codetools graph XML]; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; CollapsABEL = derive2 { name="CollapsABEL"; version="0.10.11"; sha256="0libm1wv34av3vm2vvbqcnxjh4y1rwfi8qzjca8qdz9490vngags"; depends=[biganalytics bigmemory collUtils dplyr ggplot2 haplo_stats R_utils rJava RSQLite stringr]; }; CollapseLevels = derive2 { name="CollapseLevels"; version="0.2.0"; sha256="1fn5k83lh0vw5j9vhq0x6ksbkrm25acpslav85wfyknsj9vzmzid"; depends=[dplyr ggplot2 lazyeval magrittr]; }; CollessLike = derive2 { name="CollessLike"; version="1.0"; sha256="080mrvszysdqvx03sd4aczvhs1zmhc6fx8zp5nwrh7mmyajslxkx"; depends=[ape igraph]; }; CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; }; - ComICS = derive2 { name="ComICS"; version="1.0.3"; sha256="1jfs0ygr88532jjw2ablyn2r3sg3hfsv5yrm4gkdgzakychj3dy2"; depends=[glmnet]; }; + ComICS = derive2 { name="ComICS"; version="1.0.4"; sha256="0brsb7y1bg23sdpxs4j1y3xdgr1q7iinxnnp17rravw72l991xqa"; depends=[glmnet]; }; CombMSC = derive2 { name="CombMSC"; version="1.4.2"; sha256="1wkawxisn9alpwrymja8dla8n25z2fhai3l2xhin0b914y2kai09"; depends=[]; }; CombinS = derive2 { name="CombinS"; version="1.1-1"; sha256="06g41zbjl54cbhhs8q7l4bbvszclvbxn3m2dqg800d6ghs9vgl6v"; depends=[]; }; - Combine = derive2 { name="Combine"; version="1.0"; sha256="0n3jkxf4s778d6fzcanb2b09xhpv5sqzawpg17bbfngfhp0vfyrq"; depends=[]; }; CombinePValue = derive2 { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; }; CombinePortfolio = derive2 { name="CombinePortfolio"; version="0.3"; sha256="0w4mw748ix7jyqfirr8bm93i742y7bpir7q5x1j3r9cqpi9h5zfv"; depends=[]; }; CommEcol = derive2 { name="CommEcol"; version="1.6.5"; sha256="02xra47znnbnsgxy6xinyk2dv8asshd4fgh7bn6qf7m6p4d743pj"; depends=[ape gmp picante vegan]; }; @@ -656,41 +664,39 @@ in with self; { CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; }; Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; CompDist = derive2 { name="CompDist"; version="1.0"; sha256="02c18ksk6clv674yh79bzg3mh9hymzhal51j6g0rnvqd5ra8g66c"; depends=[actuar fExtremes numDeriv PearsonDS rmutil VGAM]; }; - CompGLM = derive2 { name="CompGLM"; version="1.0"; sha256="04bjal92r0m7is5ygqpd0mdz3fb3pwcr7rc3mbxg9sg57nff3kf5"; depends=[Rcpp]; }; + CompGLM = derive2 { name="CompGLM"; version="2.0"; sha256="08h91lqafs2af1ms2zmd0v5bg2y9218frk5l6bj3y53791aqd5s2"; depends=[Rcpp]; }; CompLognormal = derive2 { name="CompLognormal"; version="3.0"; sha256="1dhgr9l713l2n889bpa47lbg2qab0fz0r15qa928c0b9nz688ddm"; depends=[numDeriv]; }; CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.3"; sha256="1i30hrqdk64q17vsn918c3q79brchgx2wzh1gbsgbn0dh1ncabq4"; depends=[]; }; CompR = derive2 { name="CompR"; version="1.0"; sha256="1k4q0yanvhdh3ksia7d42lxky19yci5vxhmi6h716g9sxzfsjk6b"; depends=[MASS]; }; - CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-4"; sha256="1a3j5j50fz3f8vkvdmfccv5hn00spk08xanadqxpdy8pn925gqqb"; depends=[]; }; - CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.0"; sha256="13gwxnqa0r805i1b5z3ym4pp297305jwvdn7b35pf2v9zlcnyh7c"; depends=[data_table expm Matrix]; }; + CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-5"; sha256="0p1wb97riv9mb4wiyyb1m4n2z6jf8nnfa6znwjdriphdhdwhpnha"; depends=[fields mapproj maps RandomFields scatterplot3d spam]; }; + CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.2"; sha256="0zyawv3kh3hxp771bh01jck2cvy3mz92nkv454lk70h35qm4sgrb"; depends=[data_table expm Matrix]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; - CompetingRisk = derive2 { name="CompetingRisk"; version="1.0"; sha256="0lfpqz3a8csgmv8cg4clc1dzsgxvssfr5cyn1mgyxfzssch85drm"; depends=[MASS Matrix reshape2 survival wesanderson]; }; Compind = derive2 { name="Compind"; version="2.0"; sha256="1qadyl96c9cmk1i763gc055hgv414ha59418lqk183kwl5sgbqy5"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; - Compositional = derive2 { name="Compositional"; version="2.9"; sha256="1vmnckp17hl3yr4qfpisavmfcvvsnh3d6v721dgns9a93cqs30z0"; depends=[doParallel emplik fields foreach MASS mixture Rfast sn]; }; + Compositional = derive2 { name="Compositional"; version="3.1"; sha256="0xy9b1gvxpr3k2351yax5yq6iijk3yws2fa07wmjykkl0y7m85zc"; depends=[doParallel emplik fields foreach MASS mixture Rfast sn]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6"; sha256="1kkc4xp5b6q54b76wk4ga28wl668psbpyivl6bnh3xm21276yx5k"; depends=[Rcpp]; }; - ConR = derive2 { name="ConR"; version="1.2.1"; sha256="0k6761x5dfibbbzfzmkc73ahfmw54d5rpj0rj32232qdlk48hqk5"; depends=[fields geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; }; + ConR = derive2 { name="ConR"; version="1.2.2"; sha256="0my9cb7psm0zinyfr1p8a53lbfbqf6hx7lfyxkqszckpj7gsg3hr"; depends=[doParallel fields geosphere maptools plyr raster rgdal rgeos sp spatstat spatstat_utils tibble writexl]; }; ConSpline = derive2 { name="ConSpline"; version="1.2"; sha256="16r0v0llj0pri69jqxribp8dpzh6yn6acpq20aaky14fyh3i4q7x"; depends=[coneproj]; }; Conake = derive2 { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; - CondIndTests = derive2 { name="CondIndTests"; version="0.1.3"; sha256="1lmys6a3cwk8c3d08lpb2dny9madsdf2fnslx6qjx27cg95bhdcb"; depends=[caTools kernlab lawstat MASS mgcv quantregForest randomForest RPtests]; }; + CondIndTests = derive2 { name="CondIndTests"; version="0.1.4"; sha256="0588by7rxrzm2zjigk44snsfv89vkp4fh7y72qm39g57vdz3ykjx"; depends=[caTools kernlab lawstat MASS mgcv quantregForest randomForest RPtests]; }; CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; }; - Conigrave = derive2 { name="Conigrave"; version="0.1.1"; sha256="0k9azng63pyq7xic5w00mllbyq17pz8g1zmgr6zpvkmfv13fa6yw"; depends=[ggplot2 miceadds mitools]; }; + Conigrave = derive2 { name="Conigrave"; version="0.3.0"; sha256="15zfaivawk83xr6gx5ij1xc43z5vgci8x0hglxjnhla02zn0zh9f"; depends=[ggplot2 magrittr miceadds mitools stringdist]; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.3"; sha256="0zsn3al3di0fd9hkqljpqqy4zbmh97xr6cdi4fzv80ax81fjfqyk"; depends=[]; }; ConsRank = derive2 { name="ConsRank"; version="2.0.1"; sha256="18f1gqa46f8jrcf2zj4njyy78cl0scjs9k8s9mvg0f9dpr44xnan"; depends=[gtools proxy rgl]; }; ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.2"; sha256="0761wfjxh26kf4q1qcfzfaj52553yiw1ny6l84r3wzzx4hv893qy"; depends=[caret mclust mixture mnormt mvtnorm]; }; ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.0"; sha256="1hlff3wx8r1wpkhrz0n27wjnzy6z2q8s9smyb906gwwa9xga7njy"; depends=[]; }; - ConvCalendar = derive2 { name="ConvCalendar"; version="1.2"; sha256="0yq9a42gw3pxxwvpbj6zz5a5zl7g5vkswq3mjjv5r28zwa3v05vc"; depends=[]; }; - ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="1.0.0"; sha256="0ndb7k2lfv6014a7c61a2mmcsywpa478lk6fh7d0jkv55hmnzvs9"; depends=[lmtest sandwich]; }; + ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="1.4.1"; sha256="0f74aaglby4hmg72957cj3y7jdchy5kq793skl7yidrjc1nk04ib"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.1"; sha256="0kl67ds6369mxl2i93h43r00ji12qkg0k9m4jhcxsb0ydd8rfqgp"; depends=[lattice tkrplot]; }; CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="1.0-7"; sha256="00x2ijyg1bj2xp679i453d4fd58qp7mfj3pvv3cddh0hl8yfns18"; depends=[geosphere ggplot2 raster rgeos rnaturalearth sp]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="1.1"; sha256="0pgzrgd9bzf2qh9b7h0y4mmszlxk1wxdwlid3xh7rk7pif3mw3qd"; depends=[]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.0"; sha256="1bx0jvlbhaxf4yhrfpd5l5zp7kmp6f17ckb1y9974sgc7s3hpqcd"; depends=[ggplot2 plyr reshape2 rstan]; }; - CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.0"; sha256="021x40l5p6ip5br3qnca6nywkx9fpmgx5jm8i2dngj6yz6rc3hag"; depends=[matlab statmod tensor]; }; + CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.1"; sha256="044si0nwniiglrcg6mjvs4z3hk6hhhsy49c6pigy6yf1wvvqxp4m"; depends=[matlab statmod tensor]; }; CopulaRegression = derive2 { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; }; CopyDetect = derive2 { name="CopyDetect"; version="1.2"; sha256="1sahrlg1gk1q8ciq0a8hxrlyci5i8jxz8pjpy04alckxdrxfpqbi"; depends=[irtoys]; }; - CorReg = derive2 { name="CorReg"; version="1.2.1"; sha256="1c7vvlxza0r9r07rr464y3kfkrnzz15l4jc7s727wjrw2az8rnpy"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; }; + CorReg = derive2 { name="CorReg"; version="1.2.8"; sha256="18l9aiv2ipvs14ycnzq99yvnkws38wnj42zbk5jqgv33kn37qbx2"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; }; CorShrink = derive2 { name="CorShrink"; version="0.1-5"; sha256="03g5njb191nqiy0lmk8jrwyrnl3w733b8h0krkbsjh2zravyw1xc"; depends=[ashr corpcor corrplot gridExtra Matrix reshape2]; }; Corbi = derive2 { name="Corbi"; version="0.4-2"; sha256="0h088iplryaipnfp8svw3djh016z23lv66q51gfbqpvchvjdwypw"; depends=[CRF Matrix mpmi]; }; CorporaCoCo = derive2 { name="CorporaCoCo"; version="1.1-0"; sha256="1s3wlcy6mnw9riivw5lc4gd6bjbsd77m15ipr95g46isdcrli8zb"; depends=[data_table RColorBrewer rlist]; }; @@ -707,30 +713,30 @@ in with self; { CountsEPPM = derive2 { name="CountsEPPM"; version="2.1"; sha256="1w1l4kbk8c2prq7f38maz0fc44j9za6cmj0vydmcgscb9s6f3mg7"; depends=[expm Formula numDeriv]; }; CovSel = derive2 { name="CovSel"; version="1.2.1"; sha256="02fsiykbg96ynqw25vfyrams7fs39xjmfhvb23zjbqb7ql6d0xdk"; depends=[dr MASS np]; }; CovSelHigh = derive2 { name="CovSelHigh"; version="1.1.1"; sha256="0dvvpkqml2k00gicpgp475z1rjspq3s37ys1mam29k54qlshhny6"; depends=[bartMachine bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest tmle xtable]; }; - CovTools = derive2 { name="CovTools"; version="0.3.0"; sha256="0p5mfrdp4p5fz9ld0rqrd2kj73hi1dzx0iwl4rihhgfgdplzknhf"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; }; + CovTools = derive2 { name="CovTools"; version="0.3.1"; sha256="0ph7rip2lm71qb386diw93n84jaqijz6bqn0i6zgd5gg8j3szx46"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; }; CoxBoost = derive2 { name="CoxBoost"; version="1.4"; sha256="1bxkanc8zr4g3abn4ds5wqibv65flvm4y648fs9s0l4vc9vmyshg"; depends=[Matrix prodlim survival]; }; CoxPhLb = derive2 { name="CoxPhLb"; version="1.0.0"; sha256="1j8dvbjv4h0zdjvwvpswdlsb9pf3gxixh2rhl0m1kxm6f6h5ig0z"; depends=[survival]; }; CoxPlus = derive2 { name="CoxPlus"; version="1.1.1"; sha256="038wsz206bgc0pnzx403b5ihcwhxpkrpxmwvrvqcxf8333pb62l5"; depends=[Rcpp RcppArmadillo]; }; CoxRidge = derive2 { name="CoxRidge"; version="0.9.2"; sha256="0p65mg4hzdgks03k1lj90yj6qbk50s94rwvcwzkb5xxxwrijd10r"; depends=[survival]; }; CpGFilter = derive2 { name="CpGFilter"; version="1.1"; sha256="0ccvk7lawmay0wqdyhs6ww7396dcfzazn72sq6zwyw7dl45k2j0i"; depends=[matrixStats]; }; CpGassoc = derive2 { name="CpGassoc"; version="2.60"; sha256="1zx18x8pxjl2ajnj7a7lb8383m75ysg17f4mzz0vkgl5mnf617ny"; depends=[nlme]; }; - Cprob = derive2 { name="Cprob"; version="1.4"; sha256="1kjw5hhb3fy12xlyg01i8ynl78gx0r57kvmgafbqix1s3pg2hyw6"; depends=[geepack lattice lgtdl prodlim tpr]; }; + Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; }; CrossClustering = derive2 { name="CrossClustering"; version="3.0"; sha256="0l9cdniqf63x4pfkf6y7c2qh056jwadqw45nz9jk78wamqq8hyqv"; depends=[cluster]; }; CrossScreening = derive2 { name="CrossScreening"; version="0.1.1"; sha256="1gig80r8p611ysn35ajx7xdjj5wnkcf1vspcf0i06dmh75xpm3w9"; depends=[plyr tables]; }; CrossVA = derive2 { name="CrossVA"; version="0.9.1"; sha256="13skbazs1mh5am70qlwxhvxgfx4gwlzzq6zy3vdzaa3zbykkxlvw"; depends=[lubridate]; }; - CrossValidate = derive2 { name="CrossValidate"; version="2.3.1"; sha256="1v9fwhhy2xxrrn0xd2yg7ngy7adm85fmyvqhcvnpa91ifr4ijrly"; depends=[Modeler oompaBase]; }; + CrossValidate = derive2 { name="CrossValidate"; version="2.3.2"; sha256="1dlvkv712rz3gw03c04qlk0l0mqjyds3m3pnbszk4848zby5ac6r"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-17"; sha256="168j8fl6h7x1pia5f5c18yrf0y1lvznib8clq1mv0imb7cjzkkhi"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; }; - CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-1"; sha256="1lrpwgvsif1wnp19agh8fs3nhlb7prr3hhqg28fi4ikdd1l2j3r4"; depends=[car chopsticks ellipse rJPSGCS]; }; - CsChange = derive2 { name="CsChange"; version="0.1.3"; sha256="08ss1dzwirmnlgw440g3k3vnrl1imhmd2gljnid8z2dzj5450alr"; depends=[boot Hmisc rms survival]; }; + CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-3"; sha256="1c7n020i9lxp0fam05k9v4az4rvx8fakhzi9fkma82smpl709x8q"; depends=[car chopsticks ellipse rJPSGCS]; }; + CsChange = derive2 { name="CsChange"; version="0.1.4"; sha256="1lpi8igwfdmsgm26qy4qi5cikilb0xpaajl1fd6vn696bwm1ljc2"; depends=[boot Hmisc rms survival]; }; CuCubes = derive2 { name="CuCubes"; version="0.1.0"; sha256="1cpazar85rp8xfjvy0vxivr61grzvxz7a9mirxvhynln964by6ns"; depends=[]; }; - Cubist = derive2 { name="Cubist"; version="0.2.1"; sha256="18w82l44b6jsmz19l34dmaqb22qvjcwhs4cddzhs6pzicvqw645k"; depends=[lattice reshape2]; }; + Cubist = derive2 { name="Cubist"; version="0.2.2"; sha256="1m45dpnr5djsfgqlinng6z0f2wbig2vbidlg19r3zcraqwn1agnd"; depends=[lattice reshape2]; }; CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; - Cyclops = derive2 { name="Cyclops"; version="1.3.0"; sha256="0sznzzz21qn1cxxfa3wiwvfza7lykzzf0xyqvawha9vzm8qzgqnq"; depends=[BH bit ff ffbase Matrix Rcpp RcppEigen RcppParallel survival]; }; - CytobankAPI = derive2 { name="CytobankAPI"; version="1.1.0"; sha256="1014r17krw74drykdlw24pgqylidp8yxa00zhf340ilcxfpacxyi"; depends=[curl httr jsonlite]; }; - CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="1.0"; sha256="0hr74igy43d5ybzlgqpvx9ingw6h83w502b6k55cp6zqcv5rl8d5"; depends=[CytobankAPI]; }; + Cyclops = derive2 { name="Cyclops"; version="1.3.4"; sha256="0iv4rsxy6zngjlbvwkx41np8phv49i6gp0f8yzb5k2azwksx2r3j"; depends=[BH bit ff ffbase MASS Matrix Rcpp RcppEigen RcppParallel survival]; }; + CytobankAPI = derive2 { name="CytobankAPI"; version="1.1.2"; sha256="0mv6f1v6kclz8ima9f0b3qdb7gc85nn2cnfnzb3vqhm9vvibz8ls"; depends=[curl httr jsonlite]; }; + CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; }; D2C = derive2 { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; }; D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; }; @@ -738,12 +744,11 @@ in with self; { DAAG = derive2 { name="DAAG"; version="1.22"; sha256="16xp4qk09v9jwm4cs7b4mpn0kgl1va9rw86viwcjc54vjc32953f"; depends=[lattice latticeExtra]; }; DAAGbio = derive2 { name="DAAGbio"; version="0.63-3"; sha256="0n82d9nsvpl6cwp95by8ff9fmdafs2fdi603dlik5890adaw42x4"; depends=[limma]; }; DAAGxtras = derive2 { name="DAAGxtras"; version="0.8-4"; sha256="18lg13mbyharidj5j7ncx8s7d72v2hcnqr00vilhf3djk2mjq7xn"; depends=[]; }; - DAC = derive2 { name="DAC"; version="0.1.0"; sha256="0x27asjn1y8bxgc35ic4jpara4f7vn8w61fpg4glkjy5nbh5ss0p"; depends=[fGarch flexmix]; }; + DAC = derive2 { name="DAC"; version="0.1.1"; sha256="0abnl70k4c98n29qi64sfd5nch10abw9fknhf2aksyi0qadsiyjq"; depends=[blavaan flexmix sfsmisc truncnorm]; }; DACF = derive2 { name="DACF"; version="1.0.0"; sha256="0hv7c9lk6ivj4iz953yn11iy5p611q4si4ghn9d5a9i229s5hig8"; depends=[]; }; - DAGGER = derive2 { name="DAGGER"; version="1.4"; sha256="0b2hzv001xhch7pqgb53lfpdcjwg5lj33i6pb884l1kx92svjfr7"; depends=[Matrix quadprog Rglpk]; }; DAISIE = derive2 { name="DAISIE"; version="1.4"; sha256="16653wwz20lhf3bpzflpj5d1h7j3cqyfaqk5gn24aifga2jc0wbb"; depends=[DDD deSolve Matrix subplex tensor]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; - DALEX = derive2 { name="DALEX"; version="0.2.0"; sha256="0dls9v912bcww4csax35spxl9zx71g9ig9inzi9cr9ffinpw9rgk"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; }; + DALEX = derive2 { name="DALEX"; version="0.2.3"; sha256="0v2dmc4nnz28qjc378138j0lri2rlbrmwz97xsn9z557y4hrrmmh"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; }; DAMisc = derive2 { name="DAMisc"; version="1.4-3"; sha256="1hic53vi7mj4fvggxjl4d3j4zw8wwczh6pldyi8idrhm45hw2nh4"; depends=[boot car effects gdata lattice MASS nnet pscl QRM sm VGAM xtable]; }; @@ -752,7 +757,7 @@ in with self; { DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; DBHC = derive2 { name="DBHC"; version="0.0.2"; sha256="08sl6gv1dw2kpk1zylvyqqga6xvhzhpp5zxa9ql1hyzc2i43jivq"; depends=[ggplot2 reshape2 seqHMM TraMineR]; }; - DBI = derive2 { name="DBI"; version="0.8"; sha256="16nf8flxr5vdz8yrpprfbzydy3ajixkp9hc8ibd9n7r9nc29waym"; depends=[]; }; + DBI = derive2 { name="DBI"; version="1.0.0"; sha256="1x8wy2vg2gcgd9bww04qmf0dsn3kp0rfjd8q8j1r2x9zxccg25pz"; depends=[]; }; DBItest = derive2 { name="DBItest"; version="1.5-2"; sha256="05wizjm2b97fsdha2i391h38xb0zrkhnd036qvdcm0r5l0y56sm8"; depends=[blob DBI desc hms R6 testthat withr]; }; DBKGrad = derive2 { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; }; DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; @@ -764,12 +769,14 @@ in with self; { DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; DCchoice = derive2 { name="DCchoice"; version="0.0.15"; sha256="1qdqn45ipq0806r25ri4aygzq48k8j5k8rlhi1cafym421yq6bfg"; depends=[Formula interval MASS]; }; DCluster = derive2 { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot MASS spdep]; }; - DClusterm = derive2 { name="DClusterm"; version="0.2"; sha256="0bnl9ic8q7mrb2508c5g2fkpp7wbhasivgvhldqnbqn2lyy8l76a"; depends=[DCluster gridExtra latticeExtra lme4 pscl RColorBrewer sp spacetime xts]; }; - DDD = derive2 { name="DDD"; version="3.6"; sha256="0lkij10z6bviay2dg6k5pmb9ddg4smcz96fkww0qx8h636zd2xlq"; depends=[ade4 ape deSolve expoRkit Matrix phytools pracma SparseM subplex]; }; + DClusterm = derive2 { name="DClusterm"; version="0.2-1"; sha256="1xnnm73ivz4pgsszjj5wxzq1f2az110wmn88j89xy2wgk8rp0rab"; depends=[DCluster gridExtra latticeExtra lme4 pscl RColorBrewer sp spacetime xts]; }; + DDD = derive2 { name="DDD"; version="3.7"; sha256="0clcrmdxfvlk8kay9qhx8lxwf22w042l4ffvl097i8pfqlik97g1"; depends=[ade4 ape deSolve expm Matrix phytools pracma SparseM subplex testthat]; }; DDHFm = derive2 { name="DDHFm"; version="1.1.2"; sha256="0lgh6kcfas06p2yy7zy21r05k5521xbj5af3wwwssp5li1cia35g"; depends=[lokern wavethresh]; }; DDIwR = derive2 { name="DDIwR"; version="0.2-0"; sha256="0dqbldl5c6b8i5q3yk0hwd12lp8z9j4ilnmsqrkj69fv7mys9q3k"; depends=[foreign XML]; }; DDM = derive2 { name="DDM"; version="1.0-0"; sha256="19g06qk3lzasj294x9wfij729mlq6ryvjqkn3rgl5xp1w0gx9wi2"; depends=[]; }; + DDPGPSurv = derive2 { name="DDPGPSurv"; version="1.0"; sha256="1d271yv621jmwd4dmdnhpwrk95gbpw7g6r2v05lc3d6wzlzpd78c"; depends=[MASS mc2d mvnfast Rcpp RcppArmadillo survival]; }; DDRTree = derive2 { name="DDRTree"; version="0.1.5"; sha256="16s5fjw7kwlxhrkzdny62sx32fvmg3rxjc3wrh6krd31jh1fqlfk"; depends=[BH irlba Rcpp RcppEigen]; }; + DDoutlier = derive2 { name="DDoutlier"; version="0.1.0"; sha256="1az5zq0l3kj959572mlpc4zl73f16iag0yrs217fa9m8xpd3c2sd"; depends=[dbscan pracma proxy]; }; DECIDE = derive2 { name="DECIDE"; version="1.2"; sha256="18kn2pm9r0ims2k1jfsfzh258wwxz0xg86rsbwgq6szh0azlq3qy"; depends=[]; }; DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; DEMEtics = derive2 { name="DEMEtics"; version="0.8-7"; sha256="1s59qim60d4gp5rxjacdbmxdbpdm7cy9samn088w8fs0q232vjjx"; depends=[]; }; @@ -778,13 +785,13 @@ in with self; { DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; }; DEoptim = derive2 { name="DEoptim"; version="2.2-4"; sha256="10nlsvms5pf0wmn4z1lj6vnmpwr10q8nhdy5xy9rn7hd1627fm0a"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-8"; sha256="1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4"; depends=[]; }; - DEploid = derive2 { name="DEploid"; version="0.4.4"; sha256="1hcn54mn1kil6kg77j4aij15h69fnmp40d6xxfgijjcgydp211bf"; depends=[magrittr plotly Rcpp scales]; }; + DEploid = derive2 { name="DEploid"; version="0.5.0"; sha256="18v1fyxf6pbkanwmncd9jx9l7c9dk3y9dbc89a4cp3qshfn4vbhi"; depends=[htmlwidgets magrittr plotly Rcpp rmarkdown scales]; }; DFIT = derive2 { name="DFIT"; version="1.0-3"; sha256="1h0wvcplb7j7dqz9hkaw30x92ngxzkdvkwpg0142hrqb201zfrac"; depends=[ggplot2 mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.1"; sha256="1lqqzrsidkli4bk4jikq5f75jzqyzhv94n882yic5ndxgv26p9ic"; depends=[matrixStats WGCNA]; }; DGM = derive2 { name="DGM"; version="1.7.2"; sha256="0z0f8bazzsahvjkpfif50db700mqb7arcglwsfxcar9qdy082vsn"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; DGVM3D = derive2 { name="DGVM3D"; version="1.0.0"; sha256="17cxv8rm7kmxms7v7hzbwbdwa3xl1hwgiljf97ppwswglqyik9iv"; depends=[rgl]; }; - DHARMa = derive2 { name="DHARMa"; version="0.1.6"; sha256="1b7yqy4id6ydvyqrgpl5zkmch64rl2b0jcj6ww5rq6afzgkfbfay"; depends=[ape doParallel foreach gap lme4 lmtest MASS mgcv qrnn sfsmisc]; }; - DHS_rates = derive2 { name="DHS.rates"; version="0.3.0"; sha256="039pa3pln7vj2md4kcv9070qbm8v7aknhhgh49hs5xiwa682g1f7"; depends=[haven matrixStats reshape survey]; }; + DHARMa = derive2 { name="DHARMa"; version="0.2.0"; sha256="0jh01z2ygz8hi0vh2fxw52ck0wia4hp44qc7v0bks8776gbwj8il"; depends=[ape doParallel foreach gap glmmTMB lme4 lmtest MASS mgcv qrnn sfsmisc]; }; + DHS_rates = derive2 { name="DHS.rates"; version="0.3.1"; sha256="1lwmd58q2pqynh2dj3alcrri8zwxayq92nn7hwzwlqw70xr5anqv"; depends=[haven matrixStats reshape survey]; }; DIFboost = derive2 { name="DIFboost"; version="0.2"; sha256="0wyjk870n18lq0dwhm9ndsh5vv0d8wkrbcky68w454vzrrw1q9h8"; depends=[mboost penalized stabs]; }; DIFlasso = derive2 { name="DIFlasso"; version="1.0-3"; sha256="195wiy0jjkq6bh2b6wrjmr5l34pzx0i2qqvwp4pzv77sx737ds0v"; depends=[grplasso miscTools penalized]; }; DIFtree = derive2 { name="DIFtree"; version="2.1.4"; sha256="16cyd634jflaszpfq0ymwlbv57ci1iyffwai641jczn8cny504zl"; depends=[penalized plotrix]; }; @@ -810,17 +817,19 @@ in with self; { DOT = derive2 { name="DOT"; version="0.1"; sha256="0qh5n57cp9c2n5yn59q4wggz82943pwfanp3kx869aba2x3sj30i"; depends=[V8]; }; DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; + DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; DPWeibull = derive2 { name="DPWeibull"; version="1.2"; sha256="0s1c3pn8pivg4227xhis5scmh9zc6fq36inphy6226hriny6q0v9"; depends=[DPpackage matrixStats Rcpp truncdist]; }; DPpackage = derive2 { name="DPpackage"; version="1.1-7.4"; sha256="0lfw55kbjwr1dqkd98p6488p6c0nh5pkfkc9wpds8wsqm38siad6"; depends=[MASS nlme survival]; }; + DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; - DRIP = derive2 { name="DRIP"; version="1.1"; sha256="050xfq30fp9m03ig938bci2haiglj6jj4k327fpz7r2y78cgcnn4"; depends=[caTools readbitmap]; }; + DRIP = derive2 { name="DRIP"; version="1.3"; sha256="08v6sajgaqa0zvkr9hfzjxsj78acrkj6l9hjxkirbspg3fwqphk7"; depends=[caTools readbitmap]; }; DRR = derive2 { name="DRR"; version="0.0.3"; sha256="1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; DSAIDE = derive2 { name="DSAIDE"; version="0.6.0"; sha256="0jg5shgq1f9k0fcpzkpynd87xfcj8ky09xsz8n8yfvy4fw8d77kl"; depends=[adaptivetau deSolve knitr shiny]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; DSL = derive2 { name="DSL"; version="0.1-6"; sha256="0fmqxladifqqcs4mpb8a1az74fyb4gb8l2y5gzqaad3dbiz82qih"; depends=[]; }; DSpat = derive2 { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; }; - DSsim = derive2 { name="DSsim"; version="1.1.2"; sha256="1n46r7nn2wl8xnc22wf91mcz745yzx83g8nk5mmj429j3i0sfd77"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; + DSsim = derive2 { name="DSsim"; version="1.1.3"; sha256="1i92l29lqn7nb6zdkjydp9fvg8m8qazysnrjafknvnm5gy7mgqwb"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; }; DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; DT = derive2 { name="DT"; version="0.4"; sha256="06gsqz7p2fv6hc3fm3759gaa50krcfrqrmy7qbxyam6a36w9daix"; depends=[crosstalk htmltools htmlwidgets magrittr]; }; @@ -832,6 +841,7 @@ in with self; { DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn = derive2 { name="DTRlearn"; version="1.3"; sha256="0ngzvjlzn20pff1ihw87nar7riiva4pnfih7hlsr0iszd3v3b1gq"; depends=[ggplot2 glmnet kernlab MASS]; }; DTRreg = derive2 { name="DTRreg"; version="1.3"; sha256="1144kcqblyrpdqyj9as6y47iq3x99bf76hdw6j43cmgcs11gapc3"; depends=[]; }; + DTWBI = derive2 { name="DTWBI"; version="1.0"; sha256="001lkjk8dh6mdcysc8mw9c37xp543hjfci0k0py44z7c90b9p2la"; depends=[dtw e1071 entropy lsa rlist]; }; DVHmetrics = derive2 { name="DVHmetrics"; version="0.3.7"; sha256="1syxw49pzh36nfq0zfr83cwpac86fnj0b7nlqiin4jb00h8vrf6i"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; DWDLargeR = derive2 { name="DWDLargeR"; version="0.1-0"; sha256="1bxdvgj38xv2xj98njpyhy12b54nccwnc3v92kkpd3i7nwbw48dy"; depends=[Matrix SparseM]; }; DWLasso = derive2 { name="DWLasso"; version="1.1"; sha256="1i8j8wjfvg69ldr8ahz1zv3m2wgxd701iph94ad22zs9qwqfg16z"; depends=[glmnet hglasso Matrix]; }; @@ -843,20 +853,19 @@ in with self; { DandEFA = derive2 { name="DandEFA"; version="1.6"; sha256="1ir1z76c8742vqdlwv35l4rhr0x7lhghz24g35zn7b30671lypf8"; depends=[gplots polycor]; }; Dark = derive2 { name="Dark"; version="0.9.8"; sha256="1f01aq4g50f07005c8k91cfy9hvl3fmb4yl2924d7512m3884xlv"; depends=[]; }; Dasst = derive2 { name="Dasst"; version="0.3.3"; sha256="0nrcvcfzr2y1jc984rpi3fmggns65sphc6nqr9l91h5qvpdcw7cl"; depends=[]; }; - DatABEL = derive2 { name="DatABEL"; version="0.9-6"; sha256="1w0w3gwacqrbqjdcngdp44d2gb16pq9grq2f8j2bhbxc4nkx12n1"; depends=[]; }; DatAssim = derive2 { name="DatAssim"; version="1.0"; sha256="120gazyyxda9faydv2lyqgvflhqi2fhih1szq0sy5v1gh4xb0hhy"; depends=[Rcpp RcppArmadillo]; }; - Data2LD = derive2 { name="Data2LD"; version="0.1-1"; sha256="1klvp4zjbv4g07rahfmwxdms0bh7ca064iap681r1w5jbyq8pkzx"; depends=[fda Matrix R_cache]; }; + Data2LD = derive2 { name="Data2LD"; version="1.1.0"; sha256="0sa6iwhhnj7rakj57zscl4008jskd26zbdvxqr08bpf8xbk9v3xi"; depends=[deSolve fda Matrix R_cache]; }; DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; }; - DataExplorer = derive2 { name="DataExplorer"; version="0.5.0"; sha256="1vsbnm720p786f627sfx447p8q45nwd2gdm7b9hf4d3rsmrcwqsf"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; + DataExplorer = derive2 { name="DataExplorer"; version="0.6.0"; sha256="1vwihlslrcwca3q15hxpa9kvajv0clz7scqycaxhxk9ngdwcqh10"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; DataGraph = derive2 { name="DataGraph"; version="1.0.1"; sha256="0rvysvkcs926jzhp7iz9d5np0pa31y825ajn9yyzhbdfk5dg2wry"; depends=[Rcpp]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; - DataVisualizations = derive2 { name="DataVisualizations"; version="0.9.2"; sha256="0np64vbk878i52gbh7gs1pklqy60zpa7n44ir7mxqyw3v50bvp8s"; depends=[AdaptGauss ggplot2 magrittr Rcpp RcppArmadillo]; }; - DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.0.1"; sha256="0j7l8jgm19gbi5xprhy1brqaghm4r1a7qy0wkcjb3i46as3v9dyj"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; - Datasmith = derive2 { name="Datasmith"; version="1.0-1"; sha256="1ba23b8a931pvml2dzw0zkm40akcl2lb6rps6bffrl7lvxiy35y1"; depends=[igraph lbfgs MASS Matrix nloptr truncnorm vegan]; }; + DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.1"; sha256="1y38q1rw92qzsl22663v730i9c1mlyyw9pb167f8f81snb0x9fda"; depends=[AdaptGauss ggplot2 magrittr Rcpp RcppArmadillo sp]; }; + DatabaseConnector = derive2 { name="DatabaseConnector"; version="2.1.3"; sha256="00dd9m7qf97ymrjjklg4a0j93wcn6mrmvg7spywm524nickcd4f6"; depends=[bit DatabaseConnectorJars DBI ff ffbase rJava SqlRender urltools]; }; + DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.0.0"; sha256="1m739q9x5w2xcwx19qm633z6xfijqdgcdvfjj6c5jhn66hc401nq"; depends=[rJava]; }; + DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.0"; sha256="19in7n2fs5m965wf37mplsafiqrmgv1lcyhf7rlk4wvq4y2gvic6"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; Davies = derive2 { name="Davies"; version="1.1-9"; sha256="19n2szki2dc8z01zh5a7bq4scgisnpd2qqbiimgrswjrykgh2fpm"; depends=[]; }; - DeLorean = derive2 { name="DeLorean"; version="1.3.0"; sha256="0bsmrpraaks4nsjdbhn1npvybb29pxiby8sdimv36nqpb1fyjgpk"; depends=[broom coda dplyr fastICA functional ggplot2 kernlab MASS memoise Rcpp reshape2 rstan seriation stringr]; }; DecorateR = derive2 { name="DecorateR"; version="0.1.1"; sha256="1dvyadlksqv8ns043yh91f6kw162k6r0zwn13j1g6pvismw04br9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeducerExtras = derive2 { name="DeducerExtras"; version="1.7"; sha256="0sngsq31469a74y7nhskl82fwy2i0ga68m9g6b1xyhxz1a8kgvlg"; depends=[Deducer irr rJava]; }; @@ -865,26 +874,27 @@ in with self; { DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; }; DeducerSurvival = derive2 { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; }; DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; - Delaporte = derive2 { name="Delaporte"; version="6.1.0"; sha256="1gpckw6vd00cjpf164rmxxdvg08ky1as9rj7ls3l52ghyn0s3pxs"; depends=[]; }; + Delaporte = derive2 { name="Delaporte"; version="6.2.0"; sha256="0lhi4gfps00c9psr8kk7zzh7ky4y7xi2va303darxq9j6v509qck"; depends=[]; }; DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; }; Delta = derive2 { name="Delta"; version="0.1.1.11"; sha256="1fi5sgyrf86xmfxhglqxcc0hq5mpc8ar3nk2s4wx3rw4if3sdxdz"; depends=[]; }; Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; }; DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; - DendroSync = derive2 { name="DendroSync"; version="0.1.0"; sha256="0694pw5wh6ff30gpxxn4spkdyzybqhdvh2p9ciijnn454rqv6qm6"; depends=[ggplot2 gridExtra nlme]; }; + DendroSync = derive2 { name="DendroSync"; version="0.1.1"; sha256="0lizdkd5izqn3n4iqcj6gyc2p2c3ajljfhv5js4wfl2fljs46wkg"; depends=[ggplot2 gridExtra nlme]; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; }; DensParcorr = derive2 { name="DensParcorr"; version="1.0"; sha256="15w0ifcq1js0wyjscfhlbga77sgzqpmz7zmwa77y92iwna8q66ad"; depends=[clime gplots]; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; - DepthProc = derive2 { name="DepthProc"; version="2.0.2"; sha256="0n9hs6fp047gnd8y87rzx5qcr3hqg3pdck97hcbzkd8jsi1b1daw"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; - Deriv = derive2 { name="Deriv"; version="3.8.4"; sha256="1la2afxr9nilb32s3nc1j3spxzgcqn48aywq96pckpjk8vypsjyy"; depends=[]; }; + DepthProc = derive2 { name="DepthProc"; version="2.0.3"; sha256="0zzbk0vbl2qfwr5j203xpzahf6kl0ya4l7xfjdc6diadfnr0w94y"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; + Deriv = derive2 { name="Deriv"; version="3.8.5"; sha256="0815ws2zmla3ici1n8amkc8fz8lwpbg5z68m8j3nhc79m2ikvm20"; depends=[]; }; DescTools = derive2 { name="DescTools"; version="0.99.24"; sha256="1ns0vqpnfj995dq1l6pmah2wi6l8zacndha6brhy97hyn84mc83k"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.0"; sha256="1qyxbnmr2dycyfivdyvdqcbpk993q9glrixgp64pflx3sqz91yyk"; depends=[DescTools rstudioapi]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.5"; sha256="02b6yjgklsdjh3rikc8f5wfx08ymbygr3fyq1c134xhffhykrlgp"; depends=[GGally ggplot2 plyr reshape2 scales]; }; - DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.2.1"; sha256="0mb33ihqr8jj1ispykvyc7jn1wyaagb535ya5jgwlqrians41ihc"; depends=[jsonlite RCurl reshape]; }; - DetMCD = derive2 { name="DetMCD"; version="0.0.4"; sha256="0jdwwx15k8g3f5izcswsj28nfdw3n50x710mc938031yn7hjmkhg"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; - DetR = derive2 { name="DetR"; version="0.0.4"; sha256="0kvmbh7cdy3hmds1znahy1lqhd68y21kmmcki9xbq1b76n4h812n"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; + DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.0"; sha256="1cgxnsxivsqchzqywv470q9qwxczmcvwhrr51m70mcbzmib4mxw3"; depends=[curl dplyr jsonlite magrittr RCurl reshape]; }; + DetMCD = derive2 { name="DetMCD"; version="0.0.5"; sha256="034wb5hwpikli6h2rwiqr19qvzxrr4qwi4q436y7c5a5wgkfzgl5"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; + DetR = derive2 { name="DetR"; version="0.0.5"; sha256="1dd4nzkgj5pl9397aa0z3q5fpl27xbdf7q0pqbs821dyynylxzn9"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; DetSel = derive2 { name="DetSel"; version="1.0.2"; sha256="0igkccclmjwzk7sl414zlhiykym0qwaz5p76wf4i7yrpjgk7mhl9"; depends=[ash]; }; Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; Dforest = derive2 { name="Dforest"; version="0.4.2"; sha256="19jyph2zqfyq9vv22kb6fqy89l0vcviv19zgk10hbd7q850f6ryn"; depends=[ggplot2 rpart]; }; + DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.1.0"; sha256="02kk0qqi9skb2pszfsgasa9fj7iz1brwxgwcw1dq9gf5hxr9zra4"; depends=[]; }; DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.0"; sha256="0zik8j50yfxgzdv2cf6q80kw8nb5y55l9sbrp60qc08r3fp6s61b"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rgexf rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.1.1"; sha256="1diwzckn0f2dv0vj2mdzy7k3md6j472xzj82ip23adwr27vlfsi3"; depends=[ggplot2]; }; @@ -904,10 +914,10 @@ in with self; { DirectEffects = derive2 { name="DirectEffects"; version="0.1"; sha256="0c9inxn624c5rxa86d8r8jhsrm42rcsm4xxrwg7h3lvpairiyil2"; depends=[Formula]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.2"; sha256="060nscnn7wamnbb45a55wr6rirlbpwwjz0kxiw3aiqkm16ilzfbs"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="3.1"; sha256="0zx6wflc3hnal3n0ql427dsw8npd46sbz4v42lj53yax71cdg8lj"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; + Directional = derive2 { name="Directional"; version="3.2"; sha256="0wjlkaq6wwpfllyk9qjmpap3vy0yxgbd12yz4nmmf51fnpqv75a6"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.6-3"; sha256="0qvnsbyn3livp5jrnxskf5sf7f2svy5mqkmnhzncb9bwf3kxpyla"; depends=[Formula maxLik rgl]; }; - DisHet = derive2 { name="DisHet"; version="0.2.2"; sha256="03jg7y8hd7c7bi9df37g1p7i28l7l2hyana4y2js7hgc88gv376l"; depends=[gtools matrixStats]; }; - Disake = derive2 { name="Disake"; version="1.5"; sha256="1fw45fmnir6h34jw8917mhyz6cgzbq4ywyyf51qxhm68wgzy9h17"; depends=[]; }; + DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; + DisImpact = derive2 { name="DisImpact"; version="0.0.2"; sha256="0rn92vdxll4r20q0ybqrd3sdpa1bsg9zmbb98zmllfvmh2fgj6a1"; depends=[dplyr magrittr rlang]; }; DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; }; DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; }; @@ -916,17 +926,15 @@ in with self; { Distance = derive2 { name="Distance"; version="0.9.7"; sha256="0g2zb7im3l4043bml7akd2cbss3p7mlvds6iv1libimlpy1dr71f"; depends=[mrds]; }; DistatisR = derive2 { name="DistatisR"; version="1.0"; sha256="1il00v26q68h5dd5c9lm2jblgn8hs6n0457r13mlw6r7pcj0158j"; depends=[car prettyGraphs]; }; DistributionUtils = derive2 { name="DistributionUtils"; version="0.5-1"; sha256="0gw531wfrjx1sxh17qh48dwbxnibgr0viga07vsp8nay7l02jap9"; depends=[RUnit]; }; - DivE = derive2 { name="DivE"; version="1.0"; sha256="1ixkk8kd3ri78ykq178izib0vwppnbiwbpc1139rcl8f5giiwcdh"; depends=[deSolve FME rgeos sp]; }; DivMelt = derive2 { name="DivMelt"; version="1.0.3"; sha256="03vkz8d283l3zgqg7bh5dg3bss27pxv4qih7zwspwyjk81nw3xmr"; depends=[glmnet]; }; DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; - DiversitySampler = derive2 { name="DiversitySampler"; version="2.1"; sha256="1sfx7craykb82ncphvdj19mzc0kwzafhxlk9jcxkskygrlwsxfgg"; depends=[]; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; DoE_MIParray = derive2 { name="DoE.MIParray"; version="0.11"; sha256="0plwvji2rrxmjnf61mj1ijglc9z62n26ijqsf65s35c19qv2g0y1"; depends=[DoE_base]; }; - DoE_base = derive2 { name="DoE.base"; version="0.32"; sha256="1qy3n8m9y9h4cv3p6vdjifv7118rmqqxshk7sqls0m4xr3vyzwv5"; depends=[combinat conf_design lattice MASS numbers vcd]; }; + DoE_base = derive2 { name="DoE.base"; version="1.0"; sha256="01h2slkrc4vzmz54vilv6qkgfz0f9jhq3bb684rl7cx55smhzr68"; depends=[combinat conf_design lattice MASS numbers vcd]; }; DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.9"; sha256="0l4dxb0f4ql5k3x1avfzs1w54qwjxfp8rl9h9vg6p1zhbkz4qz06"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; DoEstRare = derive2 { name="DoEstRare"; version="0.2"; sha256="0y9ymw7114jk1rwiasq400bpgvkxv6rpc954c7v9mgxd3c2nfza7"; depends=[]; }; DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; }; - Dodge = derive2 { name="Dodge"; version="0.8"; sha256="1vnvqb2qvl6c13s48pyfn1g6yfhc60ql3vn7yh2zymxcsr1gxgcw"; depends=[]; }; + Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; Dominance = derive2 { name="Dominance"; version="1.1.0"; sha256="1dzfj79hv3ds72dy4fn14bp68fiw06vdxkp4dvyvj37yrrqpcxyz"; depends=[chron gdata igraph XLConnect]; }; DoseFinding = derive2 { name="DoseFinding"; version="0.9-16"; sha256="0ncr95lf4mifmx6n2qkg8m3cn326zj9w4hr7afsdxg155l11w89z"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; @@ -938,7 +946,8 @@ in with self; { DrInsight = derive2 { name="DrInsight"; version="0.1.1"; sha256="02lqf6bwbgcgyg5zx16nvnzpagmcmbsngnhmyv47256vsd9vppjd"; depends=[igraph qusage]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; - DstarM = derive2 { name="DstarM"; version="0.2.2"; sha256="014xlj5kipl2jpcgcqs1ynw05x17wbsgc5mhfjn3p96bbp6pkzzy"; depends=[DEoptim ggplot2 rtdists RWiener]; }; + DstarM = derive2 { name="DstarM"; version="0.3.0"; sha256="16vcv21dgnymhsy9j5x5pblnipf4hdyscajx6pr8kl6i95hs3hmj"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; + DtD = derive2 { name="DtD"; version="0.1.0"; sha256="1alkgd2rpjrg1sl1l22qsr5b5d3i4scvfxijhffxb0897yvg71ri"; depends=[checkmate Rcpp RcppArmadillo]; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; @@ -951,21 +960,20 @@ in with self; { EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; }; EBMAforecast = derive2 { name="EBMAforecast"; version="0.52"; sha256="1809ia0dpkilprv7x19drp1v2qckk0wm596f1i1vl0k37wbhcziv"; depends=[abind Hmisc plyr Rcpp separationplot]; }; - EBS = derive2 { name="EBS"; version="3.1"; sha256="0flj62lcshrcn5n4fmssgb2qdvg0l6r71rsn3h0clfjhbg96pqz5"; depends=[MASS]; }; EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; }; EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECFsup = derive2 { name="ECFsup"; version="0.1-2"; sha256="0fpcab0gjgsc3sx0plpx068rw3a7kfzs2nyrr477a5m0rcbqf1kh"; depends=[foreach Rcpp RcppArmadillo]; }; ECOSolveR = derive2 { name="ECOSolveR"; version="0.4"; sha256="14dpja9wr1qqip388c8b6xvdvdpwwmyq5piv182ir0rwrla5nzdb"; depends=[Matrix]; }; - ECctmc = derive2 { name="ECctmc"; version="0.2.4"; sha256="1aw0cbfgzlrkyc3m1rfhbdcdyb8wjcfx6p2mz1hvds86mf1pzv1i"; depends=[Rcpp RcppArmadillo]; }; + ECctmc = derive2 { name="ECctmc"; version="0.2.5"; sha256="0prryvc17bm1xrhzlqk2w9nj181bg99j1dph3d36h0n1vfq1d7if"; depends=[Rcpp RcppArmadillo]; }; ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.13"; sha256="0dq8ja4ydxnc7qx35qhh9ryqgi7ambwz6ka2821mmq3p994crswn"; depends=[jsonlite shiny]; }; ECoL = derive2 { name="ECoL"; version="0.1.0"; sha256="0rizs41fk4w3lwrc4xw8hl035pvg0y746w1zy3bs8ch0hqyplhdm"; depends=[cluster e1071 igraph MASS]; }; - EDA = derive2 { name="EDA"; version="1.0.1"; sha256="13qyi7yh1xqsyyvd51j5dl6dx4xh6kr97pz5v4wn46nbx6vna0dk"; depends=[ggplot2]; }; + EDA = derive2 { name="EDA"; version="1.2"; sha256="146kji0hk19vfag1j11vga5smkk1w4za9l5iakjgh61scsh2l791"; depends=[ggplot2]; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; }; EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; }; EDR = derive2 { name="EDR"; version="0.6-6"; sha256="10m92p3fy5z2kca4h9awwmvs4pqri92habkvgjvjl5ira09yvyi7"; depends=[sm]; }; EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; - EFAutilities = derive2 { name="EFAutilities"; version="1.2.1"; sha256="1hgmj9zk9mwqwmqila1ana6jzqg55aj535pkrzai2y6yq45dvfh9"; depends=[GPArotation mvtnorm plyr]; }; + EFAutilities = derive2 { name="EFAutilities"; version="1.2.2"; sha256="1gknnfyhv16a16wgach0ps9wd08d75bach4p80vjq6ld9fjvpw2h"; depends=[GPArotation mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; EGRET = derive2 { name="EGRET"; version="2.6.0"; sha256="0alr47pmq1ml64j500vkqwmvrqa3i1ccbf3w7w44fbbjy1vfp04a"; depends=[dataRetrieval fields lubridate survival truncnorm]; }; @@ -994,16 +1002,16 @@ in with self; { EMMREML = derive2 { name="EMMREML"; version="3.1"; sha256="0qwj4jlfhppjxwcjldh49b6idnagazrxybaid3k2c269wvxwvddq"; depends=[Matrix]; }; EMP = derive2 { name="EMP"; version="2.0.2"; sha256="0l9wyxmcl8b6jiykc4mim6npmz5wrsapk2wgxbfhg27dwdb847ha"; depends=[ROCR]; }; EMSC = derive2 { name="EMSC"; version="0.9.0"; sha256="13d915g7iyv724x35i9mr8msy5mhrpqhhva21vdinxbjdy6vdlr9"; depends=[pracma]; }; - EMSaov = derive2 { name="EMSaov"; version="2.2"; sha256="12y0mj72la4ciwzgr38w9ssik4hixjf5kjsjwrvz6z59hi0ldfly"; depends=[shiny]; }; + EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; }; EMT = derive2 { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; }; - EMVC = derive2 { name="EMVC"; version="0.3"; sha256="1n7fxmqg8762lc7lg50h6wcrxrrz4nvi0xdaganz84l8vp8w90ms"; depends=[]; }; - EMbC = derive2 { name="EMbC"; version="2.0.0"; sha256="11qnln7a36zcrycbs0lz0qdvili25adv0rxdybmb6kk20a6q1lwf"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; + EMVS = derive2 { name="EMVS"; version="1.0"; sha256="10ksrj1aav062cszg4ymnwsgib7a9hlnkksfcvmy26nx5gj2g7zl"; depends=[Rcpp RcppArmadillo]; }; + EMbC = derive2 { name="EMbC"; version="2.0.1"; sha256="0id68ws6l858nvyy790m17j9gddxmm97z66x24w5r58dxi6yfcrp"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; ENMeval = derive2 { name="ENMeval"; version="0.2.2"; sha256="1w8mjcmxxkx8lxxzzbjpv1i7cm6l8hhml7ynp80s9yiprr04bq9c"; depends=[dismo doParallel foreach raster rJava]; }; ENiRG = derive2 { name="ENiRG"; version="1.0.1"; sha256="0yjy7g0pia4g18h7mawkxn77dnnqcajnbml21rrv63qwlr347355"; depends=[ade4 fgui gdata miniGUI raster rgrass7 sp]; }; ENmisc = derive2 { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; }; EQL = derive2 { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[lattice ttutils]; }; EQUIVNONINF = derive2 { name="EQUIVNONINF"; version="1.0"; sha256="103wrry0cmikprihmgx8y4kk1pnbjis7rs1xw13w14v902xkr2rq"; depends=[BiasedUrn]; }; - ERP = derive2 { name="ERP"; version="1.1"; sha256="00w9zz5rp1asvk13sj9gkd14n2akbclsyz26jp5a3r85fh6chdm0"; depends=[fdrtool mnormt]; }; + ERP = derive2 { name="ERP"; version="2.0"; sha256="0y476ir8j54q20ibzpkla32wxp6yjv04ca67ry9kajq64ibflh7w"; depends=[corpcor fdrtool irlba mnormt pacman]; }; ERSA = derive2 { name="ERSA"; version="0.1.0"; sha256="063i9fmdccyrbap7fgas9371zv13gpcgzhlsphsn8jw9nmzpdii4"; depends=[broom car combinat dplyr ggplot2 leaps modelr purrr RColorBrewer shiny tidyr]; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; }; @@ -1014,7 +1022,7 @@ in with self; { ETAS = derive2 { name="ETAS"; version="0.4.4"; sha256="0s0j7r1nyf82qz3lavsvyd11hl0jkq69c70wh00nfy93n2ygp376"; depends=[fields goftest lattice maps Rcpp spatstat]; }; ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.4.1"; sha256="07wqrg7mnxmbdf2ibxj5kppl4sd3l608yfhbbsngkhpsrm203qva"; depends=[bit ff]; }; - EValue = derive2 { name="EValue"; version="1.1.3"; sha256="0c3fsb3p277533gn6yw8ml7d6za211j8k46ga88fsh4mlg28hb6p"; depends=[ggplot2 metafor]; }; + EValue = derive2 { name="EValue"; version="1.1.4"; sha256="09b66sck5r2ysjxpjhwgjcapx6wj1jg3v56b0x48dk7bqzmmizsd"; depends=[devtools ggplot2 metafor msm]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.1"; sha256="0n1fx6k9ndb2s9ybzizbqz662c9s1f48q6v697pqhnfy9si1nplz"; depends=[Rcpp]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; @@ -1023,21 +1031,19 @@ in with self; { EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; EasyMARK = derive2 { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; }; EasyMx = derive2 { name="EasyMx"; version="0.2-1"; sha256="03yshzb4wh3n667z9lmrwsz16chpgnl8qv3qlx425mj5iiyv626z"; depends=[OpenMx]; }; - EasyStrata = derive2 { name="EasyStrata"; version="8.6"; sha256="0agmap9lmqbpfw8ijwxmjkcqjvc1ng0jsadkqpfz71a963nkqdcl"; depends=[Cairo plotrix]; }; EbayesThresh = derive2 { name="EbayesThresh"; version="1.4-12"; sha256="07a2dd3za2dc81n6m2xy794sclp3yw7f46lg1igaflh7m9407198"; depends=[wavethresh]; }; Ecdat = derive2 { name="Ecdat"; version="0.3-1"; sha256="1lvfp2ih8ng3kn3cia687j5fd27iwiak7gk3bhgjp8bnlgblqq02"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.1-7"; sha256="0s4hhvwyi411xr7c1fv098nmwqjcyvh8vy65j5w9hd80l864lvkl"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; - EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1-4"; sha256="18l5v7zsmz35brnf6b8qfxbs8906rmyc2kkh9bm96x01m3vx8pkh"; depends=[d3heatmap edgebundleR ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; }; + EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1-5"; sha256="1953q374msvdw91m2nagxkwh5r9gnq5qss6l6mf34hayq3kwm8s9"; depends=[d3heatmap doParallel edgebundleR foreach ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; }; EcoIndR = derive2 { name="EcoIndR"; version="1.2"; sha256="1p2m4kramcf71xlm9hbk5l5mb8nmjfac1p3csai7m2gmikf559yj"; depends=[]; }; - EcoNetGen = derive2 { name="EcoNetGen"; version="0.1.1"; sha256="004y0l8hdl1kmph7y954m8k3rrqfgi6krdwywww136q0yfjdw27v"; depends=[ggplot2 igraph]; }; + EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.0"; sha256="194gry90h6m91zjvv7na8gyf3rws3mzv7rk5xhwrr2znlgcalzis"; depends=[ggplot2 igraph]; }; EcoSimR = derive2 { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; EcoVirtual = derive2 { name="EcoVirtual"; version="1.0"; sha256="1adhxwi22psr81xh1szjvn6ycv4zw31xjnswk65iazk3sc4vz7wc"; depends=[]; }; Ecohydmod = derive2 { name="Ecohydmod"; version="1.0.0"; sha256="0imkzjqp3g28l42jz5m4p85wg5rawmn9hy1wys9xndnaliv6d7r2"; depends=[]; }; EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; }; - EdSurvey = derive2 { name="EdSurvey"; version="1.0.6"; sha256="1p8cxr69ckz6py0hmagm9aq7kp1q48ymffmnpwsvwh2yfkzl90yq"; depends=[data_table LaF lfactors Matrix NAEPprimer wCorr]; }; - EditImputeCont = derive2 { name="EditImputeCont"; version="1.1.0"; sha256="1pbpknz1v5k7fgwvzv5ldyxxshys4sx7d17hbwzph1z68jcmixzg"; depends=[editrules igraph Rcpp]; }; + EdSurvey = derive2 { name="EdSurvey"; version="2.0.3"; sha256="1aw0b2i7vhfz11nr6ywk873cmgvpfvim89r3m6paqgnq01yyw8nw"; depends=[data_table Formula haven LaF lfactors magrittr MASS Matrix NAEPprimer RColorBrewer readr readxl rvest stringi stringr tibble wCorr xml2 xtable]; }; EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-2"; sha256="1vkg5gi0gysnw0gz9ah8pdnnlkdfsz0jy53ps2jnnpy8lbr45zc9"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; EffectStars = derive2 { name="EffectStars"; version="1.9"; sha256="15n5mrba2s0qxcg3zikfwpxqwv38h39zmvj8sz62ni4pdhrhhjh3"; depends=[VGAM]; }; EffectStars2 = derive2 { name="EffectStars2"; version="0.1-2"; sha256="0121zb627zwkgbb84sn2dclph56dc5rkfjpci5xwd0w99vh3q66l"; depends=[miscTools VGAM]; }; @@ -1050,7 +1056,8 @@ in with self; { EloRating = derive2 { name="EloRating"; version="0.43"; sha256="0gzpi4qjiqn0lzjwy37pkz6fg7dkp2hv2dfqgzfk32wsj0bswgab"; depends=[zoo]; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; }; Emcdf = derive2 { name="Emcdf"; version="0.1.2"; sha256="0jb59jp1drcwipmk6yzg0cl366i8nhffa13c3x3fmhaj7ifv77vv"; depends=[lattice Rcpp]; }; - EmiStatR = derive2 { name="EmiStatR"; version="1.2.0.6"; sha256="1ygi3rz4xc7y0m1jd23g3li62br7fs0dcm6fj8kha5q93xn6yvrx"; depends=[doParallel foreach lattice shiny xts zoo]; }; + EmiStatR = derive2 { name="EmiStatR"; version="1.2.1.1"; sha256="1fid29ipmrq2557wcva1miifgwxdcm8g27ws5wb1lq6yiaz0z4w0"; depends=[doParallel foreach lattice shiny xts zoo]; }; + EmissV = derive2 { name="EmissV"; version="0.664.7"; sha256="09m5h0fgj7pavfxwh4anihpq69dkqay9z4xdj0c3rbqvsxgq4bx3"; depends=[data_table lwgeom ncdf4 raster sf sp units]; }; EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="1.3.6"; sha256="0fiwvdzcyz6ayzqfa6j2ygpab1cwbi04gd2c2g1j9qbdq95myipa"; depends=[ggplot2 gridExtra]; }; EnergyOnlineCPM = derive2 { name="EnergyOnlineCPM"; version="1.0"; sha256="1a3wvclqdwcvq5inhliwjnd7xzqbjvzs8h8ncy6qlhjq6s5n7nm8"; depends=[energy MASS]; }; EngrExpt = derive2 { name="EngrExpt"; version="0.1-8"; sha256="0zclvckj2i7j4kfs58hcjcl722vl2y6dcnjz238cjfgwv279gqhp"; depends=[lattice]; }; @@ -1066,19 +1073,19 @@ in with self; { EnvStats = derive2 { name="EnvStats"; version="2.3.0"; sha256="0f0sda26in2a25vq8xr6pkskjk10q2pg463h9c1xap3bghq4xgc3"; depends=[ggplot2 MASS nortest]; }; EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; - Epi = derive2 { name="Epi"; version="2.26"; sha256="0c54nvcyjvsmzmk326avbi69vbpw9vlvcqh8c6j32byiwj251ans"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival zoo]; }; + Epi = derive2 { name="Epi"; version="2.30"; sha256="0gfq4zg2c9cnwh7islsbbzaw80a2wwnh3kjv3wr1fvp11hhhdknk"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival zoo]; }; EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.12.0"; sha256="1i84fslz8sdngvkv34zhzjwzrzzxx6f4s31p8f5smmf028jlpyys"; depends=[]; }; - EpiCurve = derive2 { name="EpiCurve"; version="2.0-1"; sha256="15y6nlinw3ppi4bn8xpsrch1avn7642f06lcsv2bjyi1carhfqkw"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales timeDate]; }; + EpiCurve = derive2 { name="EpiCurve"; version="2.1-1"; sha256="0y6llpxa8xyfn9cxhq35mzfp1gc7la1708q85q4hz0l115abvk92"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales timeDate]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.0"; sha256="0hpysjl8wfgylbp4ddxmi5msvlp1w70c6pxggc2bwdgap3s127f3"; depends=[deSolve ggplot2 reshape2]; }; EpiEstim = derive2 { name="EpiEstim"; version="1.1-2"; sha256="0r56iglhkrqvlsf3gbahd544h944fmbyn6jdc113rhjscf6dl605"; depends=[]; }; EpiILM = derive2 { name="EpiILM"; version="1.4.2"; sha256="16vml2p7c4nv0lfis661x7b9wimrni1ncpa256dh99cps9508j28"; depends=[coda]; }; EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.2"; sha256="1rxq9z5lhcgzn02d9k6vgl2cb5x0s9gsly63byx4gg1h91bsvmp6"; depends=[coda]; }; EpiModel = derive2 { name="EpiModel"; version="1.6.5"; sha256="1h9490x7vna8z2dib6vgkxhpqvbybg655k88jn48i6qkda8dzv54"; depends=[ape deSolve doParallel ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer tergm]; }; - EpiStats = derive2 { name="EpiStats"; version="1.0"; sha256="17i8i3v8qpwas4h6g8sbdl42syg20fm22c7p1bnv4nzx28p9yzhy"; depends=[dplyr epiR]; }; - EpiWeek = derive2 { name="EpiWeek"; version="1.1"; sha256="19bvjiiz8qn9nlvf3nq238qi1hszlm6asrc03p8ykp6gpl2pi6js"; depends=[]; }; + EpiStats = derive2 { name="EpiStats"; version="1.1"; sha256="0xd9b3miyk2jijraph7zac7k7hqm0vn9wg1fsccfl17xy6h2wq2w"; depends=[dplyr epiR]; }; EpistemicGameTheory = derive2 { name="EpistemicGameTheory"; version="0.1.2"; sha256="0b2gnrvhlsw85qv63ib32pj55l7w63wgvbrj5rb209g6h46fby8m"; depends=[lpSolve]; }; Eplot = derive2 { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; }; + Equalden_HD = derive2 { name="Equalden.HD"; version="1.0"; sha256="19b529yaffls43fr5vrcrrvkia27mjrcx69r9svafk61z96i6pfm"; depends=[]; }; EstCRM = derive2 { name="EstCRM"; version="1.4"; sha256="1p99hmmyiy3havj72jd4xksr1j9gfmy0i7z7f3vqs5sqp72alq1k"; depends=[Hmisc lattice]; }; EstHer = derive2 { name="EstHer"; version="1.0"; sha256="1j8sczwfzil16j85mw5d1c7cxy7wimh0qq7zhmkh7mfnr36m9phr"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; }; @@ -1093,21 +1100,21 @@ in with self; { EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.0"; sha256="1v6xpxk4kbjbmv8vh517rd76gyrd9znpxqdh4jqz8lvdpnpla4wv"; depends=[deSolve geometry ggplot2 interp MASS reshape2 rgl]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; + ExPanDaR = derive2 { name="ExPanDaR"; version="0.2.0"; sha256="1iwkzrfdvxgik5c1vq04351var0micf4vh6zmkzyd8qbyvxwnnch"; depends=[CodeDepends corrplot dplyr DT ggplot2 Hmisc kableExtra lfe PKI scales shiny shinycssloaders stargazer tictoc tidyr]; }; ExPosition = derive2 { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; }; Exact = derive2 { name="Exact"; version="1.7"; sha256="0d0h406w2l99gxq6pmh9crxxrvdidcajk7bqzmifl7nfb77vp1av"; depends=[]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; - ExactPath = derive2 { name="ExactPath"; version="1.0"; sha256="0ngvalmgdswf73q0jr4psg0ihnb7qwkamm6h64l01k5rmgd5nm16"; depends=[lars ncvreg]; }; ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; ExcessMass = derive2 { name="ExcessMass"; version="1.0"; sha256="1z8l1lja02wxw8l72s3bq6sgjymn5929n123xk6b7ndd52zlfgf5"; depends=[]; }; ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.10"; sha256="11lg1n9wls96cg1byj5bfircw4bsf0rbk37h8fl0hkh29m6gyy16"; depends=[aod Biostrings GenomicAlignments GenomicRanges IRanges Rsamtools VGAM]; }; ExpDE = derive2 { name="ExpDE"; version="0.1.4"; sha256="0yjsap92dd1sb23fhw69i0ddk3lyj5f4kwp9rvz4k0vxry10hx7g"; depends=[assertthat]; }; - ExpDes = derive2 { name="ExpDes"; version="1.1.2"; sha256="0qfigbx06b3p04x5v7wban139mp8hg8x77x6nzwa4v6dr226qbkv"; depends=[]; }; - ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.1.2"; sha256="0khw2jhg2vxcivgr20ybvrsqhd8l8bir5xjmr4m44za9nhap43bz"; depends=[]; }; + ExpDes = derive2 { name="ExpDes"; version="1.2.0"; sha256="0zisgb129fdg2igc3gp8jkrv9bz2r7bz2i20ap07mqlvhq88515a"; depends=[stargazer]; }; + ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.2.0"; sha256="0fny5hcg76bm04vpbkvlwzw78m5gj28rvich7k1hhrhlxm3xi3hf"; depends=[stargazer]; }; ExpRep = derive2 { name="ExpRep"; version="1.0"; sha256="0spv3wd9c8sr338n5kdzrs28yh7s90fl70wsdnkibmlxhnh3ay3g"; depends=[]; }; ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.3.0"; sha256="14m3b9fsrpfpr8avsnhl8b3bzk2xlhwgkwag5iq8bj7bzvv4yck1"; depends=[CORElearn semiArtificial]; }; + ExtMallows = derive2 { name="ExtMallows"; version="0.1.0"; sha256="0903jslp74s1vzbklq88y2dm0dgkhd6g77b7aipxam98933k0hzz"; depends=[]; }; ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.6"; sha256="12bc4mmkmggvk3kfmz6nq13fa2470z0bx8smnvq9vf1ypdiiw85y"; depends=[Formula]; }; FACTMLE = derive2 { name="FACTMLE"; version="1.1"; sha256="0qz2i0hnn84bpps1h8jmfkgp5p59axr0wayj9dvl839radrvpqvy"; depends=[rARPACK]; }; - FACTscorer = derive2 { name="FACTscorer"; version="0.1.0"; sha256="1gbfpm5szi6w8iyp7ywpqrmdq0wrv5axj29sj9gxjwmjfh5qgqjx"; depends=[]; }; FADA = derive2 { name="FADA"; version="1.3.3"; sha256="1kckksim3m6kypm3qnyijgmnrq6dwjfs5jax5dr94giwlpfcdl8q"; depends=[corpcor crossval elasticnet glmnet MASS matrixStats mnormt sda sparseLDA]; }; FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; }; FAMT = derive2 { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[impute mnormt]; }; @@ -1126,20 +1133,21 @@ in with self; { FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; - FDboost = derive2 { name="FDboost"; version="0.3-0"; sha256="06cwd8534k3h7mk6w9z7fyq0gvb74w12gxh3njmy4m7hw8yzicc8"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; - FENmlm = derive2 { name="FENmlm"; version="2.1.0"; sha256="112n9px4hw2k7kgbkfvw9my6fjwb2ggf2q2xrycn7dp3wblsmz20"; depends=[MASS Matrix numDeriv Rcpp]; }; + FDboost = derive2 { name="FDboost"; version="0.3-1"; sha256="1bwf3kkx912386ljb210hci1y2vg0wcd6v6i6arhzzbr7gc0y39q"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; + FENmlm = derive2 { name="FENmlm"; version="2.1.1"; sha256="00cm1k5lqa7i2aginhkw4f430gigr7cj7g6shr83z61axqfmwdg4"; depends=[MASS Matrix numDeriv Rcpp]; }; FFD = derive2 { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; }; FFTrees = derive2 { name="FFTrees"; version="1.3.5"; sha256="0qz3w7qh8lgl4fn2hmrd4mnp17vaz5yf7kcpcrm038xvqq3w5c5k"; depends=[circlize e1071 igraph progress randomForest rpart stringr yarrr]; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; }; - FGN = derive2 { name="FGN"; version="2.0-12"; sha256="0jxawb4wm1vcp0131mdnc0r24dw8sd29ih0fc2wh6ahy7mxzajqn"; depends=[akima ltsa]; }; FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive2 { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; - FHDI = derive2 { name="FHDI"; version="1.2.3"; sha256="19480lp2hp0ss2mij1z2ikhdqlkxrfpyy66sz5i0jab48675l9v5"; depends=[]; }; + FHDI = derive2 { name="FHDI"; version="1.2.5"; sha256="0654k6rjbw3acpxn7iiqz5my5msw7jyzm5c6m26m00cjcrmmvivd"; depends=[]; }; FHtest = derive2 { name="FHtest"; version="1.4"; sha256="1wsn0j9ydpp9nfswiqg21p09kgkvaq8fh0y0h8syqgizah7i8vs2"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; FIACH = derive2 { name="FIACH"; version="0.1.2"; sha256="151lc5m8pb7l07kxljm32zy5kd7a4zr5vgsgwsx7ywhijh0r0585"; depends=[Rcpp RcppArmadillo RNiftyReg tkrplot]; }; + FIAR = derive2 { name="FIAR"; version="0.6"; sha256="1rqwxzya77yydp6kas5ic54nwvn8wmsn14p0s16xhy1mqxykysnb"; depends=[lavaan Matrix np]; }; + FILEST = derive2 { name="FILEST"; version="1.0.3"; sha256="0i622rfr9sb22c922kk0gg4l1akx54m6zx7wy3w1p5xrr1zjjyvp"; depends=[KRIS rARPACK]; }; + FIT = derive2 { name="FIT"; version="0.0.5"; sha256="1hky7m5b7n0d7lm79b7l7p055f8zfl7gsjdvbq09c4iwdli8h33n"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-0"; sha256="021xmbavigg70m96xw1bvsdasi5yj2wmafgb6xw4b09fmyv9hvjp"; depends=[]; }; - FLIM = derive2 { name="FLIM"; version="1.2"; sha256="180az4zwmfcglmvismyacmh7ri4qg8jvhlisqpway0z5z6fsda6r"; depends=[MASS zoo]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; FLSSS = derive2 { name="FLSSS"; version="5.2"; sha256="1px9n0rnjg32ngy8bs0z1jzmspnkn15q273w74vxjykqfd5xayfd"; depends=[Rcpp RcppParallel]; }; @@ -1155,20 +1163,18 @@ in with self; { FPV = derive2 { name="FPV"; version="0.5"; sha256="0pxa8lbcxw2hx2n0frkx0pdndlcfm7gnh9qay9q53cf5gqzzwvvc"; depends=[FuzzyNumbers FuzzyNumbers_Ext_2]; }; FRACTION = derive2 { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; }; FRAPO = derive2 { name="FRAPO"; version="0.4-1"; sha256="0mjcrplxr0cyybp5hzzwbq5j03w0f3iiiv1yk7mdqr5gb368dchq"; depends=[cccp Rglpk timeSeries]; }; - FRB = derive2 { name="FRB"; version="1.8"; sha256="13rp4gqldx84mngrdv5fa9xamkng7b3kgy30ywykcx46gmrym6ps"; depends=[corpcor rrcov]; }; FRCC = derive2 { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[calibrate CCP corpcor MASS]; }; FREGAT = derive2 { name="FREGAT"; version="1.1.0"; sha256="04rcbwbwi53d8his0ss9hj4s2c28r292f4f2ayl70av7k74nnccy"; depends=[Matrix]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.0.1"; sha256="05hcds1g1hkpr3fww1i462p633xlhwv594fpbphvw8fm10mc0hns"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; - FREddyPro = derive2 { name="FREddyPro"; version="1.0"; sha256="0h2rdydcx9pwjl1zxghzb5vqynrwdkscyq6c9adjgz4dngfwyzsw"; depends=[dismo ggplot2 lubridate raster RColorBrewer sp]; }; FRK = derive2 { name="FRK"; version="0.2.1"; sha256="042j6n3yx46123d0qsghbynjf1h0iri4kfd92z5nbcgv7wggk4d3"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime sparseinv]; }; - FRegSigCom = derive2 { name="FRegSigCom"; version="0.1.0"; sha256="02lvgxxr12rfs4k7dg3rl249nbvfkqaywas3k6jhm378j3j8yaaf"; depends=[fda]; }; - FSA = derive2 { name="FSA"; version="0.8.19"; sha256="0sj928r3dx320q3684ckw8yny6s209n57j0sxdzk7bwl9syyp6ma"; depends=[car dplyr dunn_test epitools gplots lmtest plotrix plyr sciplot]; }; + FRegSigCom = derive2 { name="FRegSigCom"; version="0.2.2"; sha256="1jbksgx561fc4bgsyz3d1b3amqc80bzzl96ri74rbd3lqbhgrn0y"; depends=[fda Matrix Rcpp RcppEigen]; }; + FSA = derive2 { name="FSA"; version="0.8.20"; sha256="1vvsjwyb03wiqxlzgig3gxn9aj5lr7kx183gsjz2xysxp07rv9hf"; depends=[car dplyr dunn_test epitools gplots lmtest plotrix plyr sciplot]; }; FSAdata = derive2 { name="FSAdata"; version="0.3.6"; sha256="0r4g3s4a7hizxj7zlp8wb5sldnx6kc99vak8ww715bhzpzq40qf8"; depends=[]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; FSTpackage = derive2 { name="FSTpackage"; version="0.1"; sha256="1fjqsl59fg4x9vkbv4b0qmfxlaa2q3rzpl40grv24yg6ixfagmdb"; depends=[CompQuadForm MASS Matrix mvtnorm SKAT]; }; - FSelector = derive2 { name="FSelector"; version="0.21"; sha256="0qk54b4svihwcmfdp5k8pcvy60568zlg4z2qqiawr7h4inzmvrlk"; depends=[digest entropy randomForest RWeka]; }; - FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.1.8"; sha256="0qn916i0gcq7l4ym8yyl9dk0iwh6m4fkwcvvm60yvzbglv8dpqjc"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; + FSelector = derive2 { name="FSelector"; version="0.31"; sha256="1ryqrwz9h7ggxvmxyw4viajlkvd3r7i6ihcfrwsz6axyk5y0qarg"; depends=[digest entropy randomForest RWeka]; }; + FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.1.10"; sha256="1i844k8qacbxv4hzv2d8d0jxijf2p2r1xh1ihcp4dijc9ap8wvg8"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; FTICRMS = derive2 { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; }; FTRLProximal = derive2 { name="FTRLProximal"; version="0.3.0"; sha256="0wnlswvxiw7gvmn9yq1v8jixwspfbvcg3rklqcd0ib38d72ww7w0"; depends=[Matrix]; }; FUNLDA = derive2 { name="FUNLDA"; version="1.1"; sha256="1qqwpics63qab43mvpm275rk9iywawr4gap0qa832i6iy3jp1h3c"; depends=[Rcpp RcppArmadillo]; }; @@ -1177,30 +1183,30 @@ in with self; { FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; FactoClass = derive2 { name="FactoClass"; version="1.2.4"; sha256="0rzbzl32hk4mrs6njm4cnj84ifsf52ms5khy43m9bfmwwmadbilr"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; - FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.1"; sha256="09fnlqwnijg94yfm3q41pdck9yxaq037m7421g4hdxaigljjb6ml"; depends=[FactoMineR rmarkdown rrcov]; }; - FactoMineR = derive2 { name="FactoMineR"; version="1.40"; sha256="1s4mdmxp66ipnbqwzs1s2fyyr8vzbrxamr2sd9k5a6sqwy7pgjv8"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; }; + FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.3"; sha256="1924f5sfadgs47ja1ljwqm3slnmqqz1pwxhh9cn1rg1hi8g7db6f"; depends=[FactoMineR rmarkdown rrcov]; }; + FactoMineR = derive2 { name="FactoMineR"; version="1.41"; sha256="1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; }; FactorsR = derive2 { name="FactorsR"; version="1.2"; sha256="0y6r5ch0h0sag1xinvnjr7q4495naygvi5iiqq9bc51ijv228c0m"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="1.0.6"; sha256="1rb16g4gqq9mmwgpp94j9g5iv5p1psjqllsp9qn7ccccmgn6nnw9"; depends=[colourpicker FactoMineR shiny]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FamEvent = derive2 { name="FamEvent"; version="1.3"; sha256="0jf4ph9mskycyckyg9biy0h1zk5q6nvj8669zfh8nfnnn2yh3s48"; depends=[kinship2 MASS survival truncnorm]; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; }; FarmSelect = derive2 { name="FarmSelect"; version="1.0.2"; sha256="174rzv9k0hdcfdkv7bisy70rip2iy0bnj3qa54i00wqwjdglgjdn"; depends=[fBasics ncvreg Rcpp RcppArmadillo]; }; - FarmTest = derive2 { name="FarmTest"; version="1.0.2"; sha256="1khf2l1rza1kayqrfxf17l365x1ckqs8wnqihqdq9l1jz77p7a7n"; depends=[Rcpp RcppArmadillo]; }; + FarmTest = derive2 { name="FarmTest"; version="1.0.3"; sha256="1lpl49bhnch3i56z1lrvn55qr4dimc4xp8jm3w3xiccxkpr933jj"; depends=[Rcpp RcppArmadillo]; }; FastBandChol = derive2 { name="FastBandChol"; version="0.1.1"; sha256="1hlgipn792vaylvc0r44clkjcnkns6p241a1fs8sb3gpq81naazk"; depends=[Rcpp RcppArmadillo]; }; FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; - FastHCS = derive2 { name="FastHCS"; version="0.0.5"; sha256="02ds9syqh8wpjrqibdv3kqxcyijclm572daqrj262b4b6211v46x"; depends=[matrixStats Rcpp RcppEigen robustbase]; }; + FastHCS = derive2 { name="FastHCS"; version="0.0.6"; sha256="0ds0g2lbzc33is8g8yxfs6hpvl2zdrgi9fqa7c71c3b3fwn9cqlv"; depends=[matrixStats Rcpp RcppEigen robustbase]; }; FastImputation = derive2 { name="FastImputation"; version="2.0"; sha256="0zhin8000c78kba6zly9mvpxdxx68kcsh2hn697pxkl73wqsz3p5"; depends=[Matrix]; }; FastKM = derive2 { name="FastKM"; version="1.0"; sha256="0sqxd2pg9y6yn1lnxni32ca3bgbmz04k9z37q9pzgijvf9qvik3f"; depends=[rARPACK]; }; FastKNN = derive2 { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; - FastPCS = derive2 { name="FastPCS"; version="0.1.2"; sha256="1lqb6g65vna2p7kc2y4kc5piy3280nlxl41bdkxkng2icmq14l58"; depends=[matrixStats Rcpp RcppEigen]; }; - FastRCS = derive2 { name="FastRCS"; version="0.0.7"; sha256="1pszpmb5qki4cchd1pc0j6s4sfflaikbfrbisf6c2j9p8ssxxfgk"; depends=[matrixStats Rcpp RcppEigen]; }; + FastPCS = derive2 { name="FastPCS"; version="0.1.3"; sha256="152fy5hq675n1mjdsi31a77rmi3vylvvbfgywrh62chy5xa1bf34"; depends=[matrixStats Rcpp RcppEigen]; }; + FastRCS = derive2 { name="FastRCS"; version="0.0.8"; sha256="11kqd8aii9sy65m5inxiqggyajb41iy6w92zp5wggx7pbg9m6lmy"; depends=[matrixStats Rcpp RcppEigen]; }; FastRWeb = derive2 { name="FastRWeb"; version="1.1-1"; sha256="0xh3710kvnc60pz9rl5m3ym2cxf0mag9gi29y7j3fl4dh2k7zf74"; depends=[base64enc Cairo]; }; FastSF = derive2 { name="FastSF"; version="0.1.1"; sha256="1xajav45h57hchzkvl2pb4mz9xy433lq74jnry0icid8dai5xhwb"; depends=[limSolve Rcpp RcppArmadillo]; }; FatTailsR = derive2 { name="FatTailsR"; version="1.7-5"; sha256="1l2anaf4kixidmvya64ni5b78bl9w2n6xf1lnf297lkdka8gxigw"; depends=[minpack_lm timeSeries]; }; - FateID = derive2 { name="FateID"; version="0.1.1"; sha256="1v861cfzbrva43b9w2qa9pb9xbrjj91wqcf4m5nvq5via55i14b4"; depends=[caTools DESeq2 destiny lle locfit pheatmap princurve randomForest RColorBrewer rgl Rtsne som]; }; - FeaLect = derive2 { name="FeaLect"; version="1.10"; sha256="1r7rgcadrqjhxn2g2w16axygsck82fprxg7l14ai11bn4b7h4pmb"; depends=[lars rms]; }; + FateID = derive2 { name="FateID"; version="0.1.2"; sha256="1ky03qc6vc2q8v9inanm0bmybjjcx53izjfylszhmnlgph1fp6n8"; depends=[DESeq2 destiny lle locfit pheatmap princurve randomForest RColorBrewer rgl Rtsne som zoo]; }; + FeaLect = derive2 { name="FeaLect"; version="1.14"; sha256="1h6jc8n57mvyz3gi2jdx5xacwv5iim5sx86qzrg3v1higfr54b1l"; depends=[lars rms]; }; FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.3"; sha256="0k8n3c0yiz6bb9rq6ra8z2hypb4hw4qcsdfbrgrw74kqivscs62i"; depends=[BH digest magrittr Matrix Rcpp]; }; - FedData = derive2 { name="FedData"; version="2.5.2"; sha256="0lr6q9j8rnjkn5vvk7z4irsxfhkzhi1s36pp5j8175dak240415h"; depends=[curl data_table devtools dplyr foreach Hmisc igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf soilDB sp stringr]; }; + FedData = derive2 { name="FedData"; version="2.5.4"; sha256="18j98l3bx8psd13nb47y7qrs58ds1i1pbib1d6q1178pf1k474i3"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf soilDB sp stringr]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.4"; sha256="1mcsr48hvrpfnk2f0z1bc8556jf848bpd8prm3y46gqdj452wpmm"; depends=[geoR mapdata maps proj4 sp]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.4"; sha256="0k5pafgrcb7smklgzgw2mf6npj55nm5fsr6k0xp6ji380rvdxc0y"; depends=[data_table devEMF ggplot2 gridExtra plyr png ReporteRs sqldf stringr]; }; FieldSim = derive2 { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[RColorBrewer rgl]; }; @@ -1212,30 +1218,29 @@ in with self; { FinancialMath = derive2 { name="FinancialMath"; version="0.1.1"; sha256="11nhphvd7bvbc7xfs85rib763r1mpvxmsj6hgzfib5aifib5k5js"; depends=[]; }; FindAllRoots = derive2 { name="FindAllRoots"; version="1.0"; sha256="0n4wfm21qj5zn06jqnzxa0w9mfn18dqi6hk1jjqa56dxqw1k7vw0"; depends=[]; }; FindIt = derive2 { name="FindIt"; version="1.1.4"; sha256="1rnkxngkqsmqs0d0m8ihscpsigxbjgl5ga5nyfwf97b1hrbv4j37"; depends=[arm ggplot2 glinternet glmnet igraph lars lmtest Matrix quadprog sandwich]; }; - FindMinIC = derive2 { name="FindMinIC"; version="1.6"; sha256="0vlr56nw32msvz8bljrw82nzrnazncs6nz7zisidffm2v3najkar"; depends=[nlme sets]; }; - FinePop = derive2 { name="FinePop"; version="1.4.1"; sha256="06wabgrxfq11ncbll5d0f07kkh23w2hrvjx8k1vy55q9f1dwd3sb"; depends=[]; }; + FinePop = derive2 { name="FinePop"; version="1.5.0"; sha256="0dis6nxdlgvznsv0817hnfc4nirv7vvzi0n1wd378zdn60j2fwbv"; depends=[]; }; FisHiCal = derive2 { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; }; - FishResp = derive2 { name="FishResp"; version="0.2.0"; sha256="1iscxa06pqd6rci3fwdxq2pqyiirr2fzbhs9c9xwyp3c9cmamv8h"; depends=[chron lattice mclust respirometry rMR]; }; - FisherEM = derive2 { name="FisherEM"; version="1.4"; sha256="1lhkyyk82i6alxyiqrvy5fx60f8vab0y62zmw5fjaq6h0vczqn3s"; depends=[elasticnet MASS]; }; + FishResp = derive2 { name="FishResp"; version="0.3.0"; sha256="1rn4vpg33q7x7j0srjndz3c16gzl97f31pvcqcnbnp1c687irb6l"; depends=[chron lattice mclust respirometry rMR]; }; FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; FitARMA = derive2 { name="FitARMA"; version="1.6"; sha256="1r9mqrqkm4wh3nd6v9wmpj23gw21i4p89p6z4c7639kn4f590ldk"; depends=[FitAR]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; - FixedPoint = derive2 { name="FixedPoint"; version="0.4"; sha256="07qhvaw4abd039dxlcfm5126lv6p5ybbw78qcmi4x51hvq6icals"; depends=[MASS]; }; + FixedPoint = derive2 { name="FixedPoint"; version="0.5"; sha256="1jnkbb52g3avs0pm37g5qn4m3ssn2qc6adr8xp5z7ahsbkffkyw2"; depends=[MASS]; }; FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; FlexGAM = derive2 { name="FlexGAM"; version="0.7.0"; sha256="1pjlsi747j347vwn94391xr3aknnspgw7rc1jnin7g0n1fgkcww4"; depends=[MASS Matrix mgcv scam]; }; FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-3"; sha256="0766ghwbdd7r4yj5xf31hnknn775ziw1hhrn13wf8bibyd8blz70"; depends=[nlme]; }; + FloodMapper = derive2 { name="FloodMapper"; version="1.0"; sha256="09pr6324namqrwdr2impgqmdmsf34g9pq91091cg9b1031djgzyq"; depends=[magick raster rgdal sp]; }; FlowRegEnvCost = derive2 { name="FlowRegEnvCost"; version="0.1.1"; sha256="0lw4kv4z0s23jy11y53rxxh7zxa7vajxrcnjgxd74xxs64vjlj88"; depends=[zoo]; }; - FlowScreen = derive2 { name="FlowScreen"; version="1.2.4"; sha256="0lp5andxzcs2wyhgwp44ss6b3jjqzf7qy0w9a0yiqxby3h58szwd"; depends=[changepoint evir zyp]; }; + FlowScreen = derive2 { name="FlowScreen"; version="1.2.5"; sha256="1kslqvxm73s8fvhf6ahmxmjgs73b78lcbcf4af1cp7axksp4bv8v"; depends=[changepoint evir zyp]; }; Flury = derive2 { name="Flury"; version="0.1-3"; sha256="105fv9azjkd8bsb9b8ba3gpy3pjnyyyp753qhrd11byp3d0bbxy0"; depends=[]; }; ForIT = derive2 { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; }; - ForecastComb = derive2 { name="ForecastComb"; version="1.1"; sha256="1ki769m3cw3kb8jhbrgiwssspszsipmg2hlbk4ifldi8s19l9m12"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; }; + ForecastComb = derive2 { name="ForecastComb"; version="1.2"; sha256="1sx151a37aadvki3bvlya4g5mbd8ns9644n4mc6f6mhglikx5y2g"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; }; ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; }; ForecastFramework = derive2 { name="ForecastFramework"; version="0.9.0"; sha256="131h9f148wn89znzsnym43amlvf4s7jzg4f2p7ld9ns7727sf56q"; depends=[abind dplyr lubridate magrittr R6 reshape2]; }; ForestTools = derive2 { name="ForestTools"; version="0.2.0"; sha256="0q9nk9n001bnz5hd8cxj6wmaf8c7g0kwfkpa0hk6ap42666rrrah"; depends=[APfun imager raster rgeos sp]; }; FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; - Formula = derive2 { name="Formula"; version="1.2-2"; sha256="0ad49bzip1zqmpj1d8jajwl4bd81fm3k6dq8p26x6mvlzc04dvwd"; depends=[]; }; + Formula = derive2 { name="Formula"; version="1.2-3"; sha256="0wiqh8rr9d5ciy80wj8f5fnmiiw0ywanvvnhkwd622dx42dk848l"; depends=[]; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; FourScores = derive2 { name="FourScores"; version="1.0"; sha256="0d21mrl9bzsvhljv7ymiyck508smp66w9qivrb2rp0p803h9yibm"; depends=[]; }; FrF2 = derive2 { name="FrF2"; version="1.7-2"; sha256="1qjgx7zbnabbs4zq7hn3j1i1xyy4yjwnz7pn25kz9s3szqr1fk66"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; }; @@ -1245,15 +1250,14 @@ in with self; { Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; }; FreeSortR = derive2 { name="FreeSortR"; version="1.3"; sha256="1m6ahhixbbizzn09pz71zvinrdshn3j6gmy05jdxa9d932agqk0w"; depends=[ellipse smacof vegan]; }; FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; }; - FunChisq = derive2 { name="FunChisq"; version="2.4.5"; sha256="0m9w5v9pdi84r5z2rzcr0v1fn3ycx5d344ab67c9984j55p8pqpj"; depends=[BH Rcpp]; }; + FunChisq = derive2 { name="FunChisq"; version="2.4.5-1"; sha256="10472bclx40ha5nz15csyk3j3kwdzfb22wx64zc1s16s903w9jhw"; depends=[BH Rcpp]; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; }; - FuncMap = derive2 { name="FuncMap"; version="1.0.8"; sha256="04rfmdy1hzxqy16csj6cf3x2kj9lg1xxvvnn494xjdwjdkfkyl09"; depends=[mvbutils]; }; + FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; }; Funclustering = derive2 { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; }; FunctionalNetworks = derive2 { name="FunctionalNetworks"; version="1.0.0"; sha256="071hjgiccbrf1gxrh7niw2w1p6vgc77qvrildi59xhk53qcwzqdp"; depends=[Biobase breastCancerVDX]; }; - FusedPCA = derive2 { name="FusedPCA"; version="0.2"; sha256="0z4kvm6mn11fmc8w62aky2binjdcgrw4ij5vg65sb55da9s8d2kd"; depends=[genlasso]; }; FusionLearn = derive2 { name="FusionLearn"; version="0.1.0"; sha256="03x21dpl72dkd4cmmaqdh42hwbdpp5c5ib79ig8pkv196231r5dn"; depends=[]; }; Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.1"; sha256="13h6armh9g57zqxyjqk6mq81jlfqxqrg2sb5p9rrhslka5m01zis"; depends=[FuzzyNumbers]; }; - FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.0"; sha256="02c08rzmmdd2l84jlzb0vck9m08afm7j599n0g09hffflcrb3fz7"; depends=[MASS]; }; + FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.1"; sha256="056k3gr257qg5wzcgaw0ad5y5cfzdlqkfypl170f0yy0l7gfzag1"; depends=[MASS]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-5"; sha256="1achmsc107b26d266q0vmip8vi3qaa5z0p183z2fjdm7zh9ch6ag"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-2"; sha256="0nvnz5df25slqdwnlw1fdv3xx9sz980x71805h8baw32ajg28a72"; depends=[]; }; @@ -1264,11 +1268,11 @@ in with self; { FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; }; G1DBN = derive2 { name="G1DBN"; version="3.1.1"; sha256="015rw3bpz32a8254janddgg1ip947qgcvmiwx5r3v7g8n854bwxn"; depends=[igraph MASS]; }; G2Sd = derive2 { name="G2Sd"; version="2.1.5"; sha256="165i6x2k56vwhk5p2p5m9vjmp9flblsapjdlz7nw9b719l6xz5zk"; depends=[ggplot2 reshape2 rJava shiny xlsx xlsxjars]; }; - GA = derive2 { name="GA"; version="3.0.2"; sha256="0jpgbniyxvilnr1jv6vmrfgnar3qczvq819xjb70inp5f41zd6wx"; depends=[foreach iterators]; }; + GA = derive2 { name="GA"; version="3.1.1"; sha256="0048ahd6yla5h67lhxqjh7lmdww6qgi7b830nlk997dyi82drmdz"; depends=[cli crayon foreach iterators Rcpp RcppArmadillo]; }; GABi = derive2 { name="GABi"; version="0.1"; sha256="1zmiaqbd1jrpiz9hk16s8rggcpl3xyyhjkkdliymx2p42vy5b5mf"; depends=[hash]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; - GADMTools = derive2 { name="GADMTools"; version="2.1-1"; sha256="1xlr3qa6li3izms51mf3g35hj0gximvgibx6d821ikxzp6892mha"; depends=[classInt dplyr ggmap ggplot2 gridExtra jsonlite lattice maptools RColorBrewer rgdal rgeos scales sp stringr]; }; + GADMTools = derive2 { name="GADMTools"; version="2.2-2"; sha256="0y5zd3wgq98654g5r8zjwn8kcbrc5kskrfw7xhrcgmzija25qxdn"; depends=[classInt dplyr ggmap ggplot2 gridExtra jsonlite lattice maptools RColorBrewer rgdal rgeos sp stringr]; }; GAIPE = derive2 { name="GAIPE"; version="1.0"; sha256="04iarbwxrhn48bk329wxis7ifzndi67kpjx6dcakawkh3g2mzsfz"; depends=[]; }; GAMBoost = derive2 { name="GAMBoost"; version="1.2-3"; sha256="0450h9zf12r524lxk1lrv9imvvkk6fmyd3chnxp18nnvys7215pv"; depends=[Matrix]; }; GAMens = derive2 { name="GAMens"; version="1.2.1"; sha256="1z10wxcg277fra2lch464l0kb02lspw9qr1i2wmq11wcz0k9qnl8"; depends=[caTools gam mlbench]; }; @@ -1277,26 +1281,24 @@ in with self; { GAR = derive2 { name="GAR"; version="1.1"; sha256="12xgk87bndinx7ibaasn51a9fad3ymvpjmixa7l18pfy99l3pcll"; depends=[httr jsonlite]; }; GAS = derive2 { name="GAS"; version="0.2.6"; sha256="18a3hagwfy0xa7abkwgf2pk5l2n0bxg4kr8y0m5iapkbc3gx5rvz"; depends=[MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; - GAparsimony = derive2 { name="GAparsimony"; version="0.9-1"; sha256="1j8r56pri7h0xr0fiihkwgccjb33n89lz8ah5p42bak7ay9fglkm"; depends=[foreach iterators]; }; + GAparsimony = derive2 { name="GAparsimony"; version="0.9.2"; sha256="0c8al4kw1fd9krninpxijg99lhfmlw4mf2623md2and25r6ixlld"; depends=[foreach iterators]; }; GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; - GBJ = derive2 { name="GBJ"; version="0.5.0"; sha256="07wrydd2vlvwc56hgcrqbass0d0qamn3rg5vsf9bamxa6pcg9s53"; depends=[BH mvtnorm Rcpp SKAT]; }; + GBJ = derive2 { name="GBJ"; version="0.5.2"; sha256="1zfddk1gn1hh67x9n5zrav5gmmrfdbnf29cz72kd3g64z2f78fgw"; depends=[BH mvtnorm Rcpp SKAT]; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; - GCD = derive2 { name="GCD"; version="4.0.1"; sha256="00rbj57km104yi39rid922qvw1xdavs4f82cnrsv1gnn9ic7fv3q"; depends=[]; }; + GCD = derive2 { name="GCD"; version="4.0.2"; sha256="1gb3qhqa212vy85qscnfssvb4rk8fq5j6zs779jq9c6jzvlfv6wb"; depends=[]; }; GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; GCalignR = derive2 { name="GCalignR"; version="1.0.1"; sha256="1p1zxf5s75ckyj7a61n43ix314p3b99knyg6z5d4sn5n417h2m42"; depends=[ggplot2 pbapply readr reshape2 stringr]; }; - GD = derive2 { name="GD"; version="1.3"; sha256="1bpcp048hphxjas3dhqyyvs1xbv0356495zhl4r0mgrk9969qkh2"; depends=[BAMMtools ggplot2 reshape2]; }; + GD = derive2 { name="GD"; version="1.6"; sha256="1rlgr4z4ibz5m8m18mw11bqcbbvfjxw2mljg78jp0lb294zh1kbb"; depends=[BAMMtools ggplot2 reshape2]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="1.4"; sha256="1i5g7gzl3fkhwxqizqwrn8098s5lrr0mk17wmpyf92s1sy315cpv"; depends=[FactoMineR nleqslv nnet]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; - GDINA = derive2 { name="GDINA"; version="2.0.8"; sha256="0mzs49hvns7bzs78ccdj6nzji0ci990sa2znsfnaqly6b38b7qaj"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; + GDINA = derive2 { name="GDINA"; version="2.1.15"; sha256="1cndib7frd40199l8zijspnidwig9jvhhk3s5dbbhlgxswq6idsz"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.1"; sha256="1akgl4j38x4qf3z9d6z7cgjd7x9f0k3lrzyrzgykqhrzmbh68z2m"; depends=[gee]; }; - GENEAclassify = derive2 { name="GENEAclassify"; version="1.4.11"; sha256="0xb9fvd7vyfdpshx1y7jcwrm9fbb4mlkvw2f7qk7isgz8dvyhzdn"; depends=[changepoint GENEAread MASS rpart signal]; }; - GENEAread = derive2 { name="GENEAread"; version="1.1.1"; sha256="0c3d76yl8dqclk8zhhgrd6bv6b599vkpbyg3hjspb6npdw6zs6k8"; depends=[bitops]; }; - GENEAsphere = derive2 { name="GENEAsphere"; version="1.4"; sha256="0z6qazcgjcs03zz26167dxg6mgjaq1z0qdsa4ggh32813l4k0ijw"; depends=[GENEAread ggplot2 MASS misc3d rgl]; }; - GENLIB = derive2 { name="GENLIB"; version="1.0.4"; sha256="1gl8qsgm9iy57rlajgc47lfxah52jsg7lpj131a6813kj0c639l7"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; + GENEAread = derive2 { name="GENEAread"; version="2.0.2"; sha256="0nkza3srfa67mmxnvhhq2wg3zm7ij73r7rpgssjaaijcxqm7qyvl"; depends=[bitops GGIR mmap]; }; + GENLIB = derive2 { name="GENLIB"; version="1.0.6"; sha256="0xyq3ggi814vi3x5kxffhi7ygvzcfj3pg0kfi7whcjpi3pjg05h8"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; GEOmap = derive2 { name="GEOmap"; version="2.4-4"; sha256="0wk2v0fwcwcm59k711fg829h2w58wkd36im4mg974iai6mqif7qh"; depends=[fields MBA RPMG splancs]; }; - GERGM = derive2 { name="GERGM"; version="0.11.2"; sha256="0vvvbb7y5lqa60n7w14gm8r7gwgah593w63162amjxmdk9jir9bi"; depends=[BH coda ggplot2 igraph matrixcalc plyr Rcpp RcppArmadillo RcppParallel scales slackr stringr vegan]; }; + GERGM = derive2 { name="GERGM"; version="0.13.0"; sha256="1h3fzkgc553bvxhcmvmlgk9sdais186h4gs1qagdihwpwn8ymbjk"; depends=[BH coda ggplot2 igraph matrixcalc plyr Rcpp RcppArmadillo RcppParallel scales slackr stringr vegan]; }; GESE = derive2 { name="GESE"; version="2.0.1"; sha256="0h3s2sbnv5wilr2mj6bnl2892p16pxrs341gg6jql1a540p669sk"; depends=[kinship2]; }; GESTr = derive2 { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[gtools mclust]; }; GEVStableGarch = derive2 { name="GEVStableGarch"; version="1.1"; sha256="1iypv0k4cbvsdyglgvf7y52sqvl5qcin627pjqwq42kisqynm8d7"; depends=[fExtremes fGarch Rsolnp skewt stabledist timeDate timeSeries]; }; @@ -1306,13 +1308,15 @@ in with self; { GFA = derive2 { name="GFA"; version="1.0.3"; sha256="10sivsqxliwcrp0ay3n2my28zki6f8vpv8i9lbld8qinx1iv2mq3"; depends=[]; }; GFD = derive2 { name="GFD"; version="0.2.5"; sha256="14bhqk5hi9w2078nn382ksgw37bx5r1jadizcrwbisglccxa0ncd"; depends=[magic MASS Matrix plotrix plyr]; }; GFGM_copula = derive2 { name="GFGM.copula"; version="1.0.3"; sha256="0pqx5fr039izhwi2kdzq9v6nlviyjclzddd092g8mkadj36diwk5"; depends=[cmprsk compound_Cox joint_Cox]; }; + GFORCE = derive2 { name="GFORCE"; version="0.1.2"; sha256="1bxc0id3vivva4d62h468vv4zrvjgzh91mlm97ga9qnlhd1r20wr"; depends=[lpSolve MASS]; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.1"; sha256="1xnxaylikjd378flw3rqw36z27b2limkmyad97zhf1cbva317d1b"; depends=[gge GGEBiplotGUI ggforce ggplot2 scales]; }; - GGIR = derive2 { name="GGIR"; version="1.5-18"; sha256="0v8i3rw5wxmzhfb3dawyykabypvfjskbsmr0phky994kx93zm604"; depends=[data_table Rcpp]; }; + GGIR = derive2 { name="GGIR"; version="1.5-23"; sha256="06bz8zlw3b2m1lb884jcbh935wxjri8hsa25aw4x7h3n70sgza25"; depends=[data_table Rcpp]; }; + GGMM = derive2 { name="GGMM"; version="1.0.0"; sha256="18haggjagp0bwy451ghz18nbjgp8zdw1m9iavjj38s57igs611n4"; depends=[equSA huge mvtnorm]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; GGMselect = derive2 { name="GGMselect"; version="0.1-12.1"; sha256="0nrkbai9jps54ldx3cvwd4x4wingfj73najwx4bv98z8zxpbnky5"; depends=[gtools lars mvtnorm]; }; - GGUM = derive2 { name="GGUM"; version="0.3.1"; sha256="1dgnhg0ggnp3f8qwzrcnapwzaraddnk2xsksin6pzybz21hfdvxd"; depends=[abind psych Rdpack viridis xlsx]; }; - GGally = derive2 { name="GGally"; version="1.3.2"; sha256="02px7j28wzbhcgcwm2m0pxb6g7s5zvphl64ix55pkvag4m2ky57l"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape]; }; + GGUM = derive2 { name="GGUM"; version="0.3.2"; sha256="0kkdg8d4ib862v6y9xjczh4v52fzzcv5c31hdf44jw4lc7npwc82"; depends=[abind psych Rdpack viridis xlsx]; }; + GGally = derive2 { name="GGally"; version="1.4.0"; sha256="1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape rlang]; }; GHQp = derive2 { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; GHap = derive2 { name="GHap"; version="1.2.2"; sha256="1qwv4llcixklr9d6lq4ljzbs8al80xnvqkcajnh8dbf3axmlmr5b"; depends=[bigmemory lme4 Matrix]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.5"; sha256="0mx4n4kf34343yiww80fw5yy0x624xsj71n8fr4dm0a2338pxq8v"; depends=[]; }; @@ -1323,53 +1327,53 @@ in with self; { GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; GLIDE = derive2 { name="GLIDE"; version="1.0.1"; sha256="02pmn0ydrmblgchz189avlrz3zaz0qfhy75d945yphpmvjf9f9m5"; depends=[doParallel foreach MASS]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; }; + GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.2-0"; sha256="06ppv7clwqd817aas9dkq1ry8vz9rbss5rdgwzc65y715r0y906k"; depends=[MASS nlme]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLMsData = derive2 { name="GLMsData"; version="1.0.0"; sha256="12q41zxniblzys20vjrf5skj8cbzlwb92mwk6jvnyd86lc70bsh1"; depends=[]; }; - GLSME = derive2 { name="GLSME"; version="1.0.3"; sha256="0flja5gk25k4z9hwskvdw4c1f88scc47xvc1l3d2447fkfrb0bwc"; depends=[corpcor mvtnorm]; }; + GLSME = derive2 { name="GLSME"; version="1.0.4"; sha256="1bh56dv4czl89dm9b6syfpsbds4wni03d5vamvjbp6wblhysxnpm"; depends=[corpcor mvtnorm]; }; GMAC = derive2 { name="GMAC"; version="3.0"; sha256="0c2cfpr8dik7j5br87hkvswrhqzj5vcna54gw6ffdf1rk9rz9j22"; depends=[]; }; GMCM = derive2 { name="GMCM"; version="1.2.4"; sha256="1y0yr6i4l28qw22drca7r4mzqjfbpm3jdssfb7p8pc664g6vmm81"; depends=[Rcpp RcppArmadillo]; }; - GMD = derive2 { name="GMD"; version="0.3.3"; sha256="0hdya8ai210wxnkfra9bzyswk3gib5fm53fs61rh0nsmg3ysdga6"; depends=[gplots]; }; GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; }; - GMDH2 = derive2 { name="GMDH2"; version="1.1"; sha256="16jnpwr7sbfai0h5prr7768nsxz65qfds46gphdryi5nd65dbv60"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; + GMDH2 = derive2 { name="GMDH2"; version="1.4"; sha256="13vbzqxmqvp39rbxw41nqfrmk0w6w8qc9nzgfbfpc07h3gcwva41"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; GMMBoost = derive2 { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[magic minqa]; }; - GMSE = derive2 { name="GMSE"; version="0.3.1.9"; sha256="02qzz4w99qissb3b95p7y5bk2wn43k01802vwnzxlq27swhkg17i"; depends=[shiny shinydashboard shinyjs]; }; + GMSE = derive2 { name="GMSE"; version="0.4.0.4"; sha256="14m4rygb24k4prkiqsqv3w5v0gv98pqpqdmgimk5wi33npxy2c2b"; depends=[shiny shinydashboard shinyjs]; }; GNE = derive2 { name="GNE"; version="0.99-1"; sha256="1avsl54xdlqq8pw16g84igcwms7if7lvdblqvfc2cn3sk8qi5xdv"; depends=[alabama BB nleqslv SQUAREM]; }; GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; GPArotation = derive2 { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqqwx47ara6glilzha87rnih0hs5fsz0jjqwv6wr1gw26rm"; depends=[]; }; GPB = derive2 { name="GPB"; version="1.0"; sha256="18cdgz00j0j1rchzn2l253rii3b0iv9ipnh5sk3yvmwrqiabmrf8"; depends=[]; }; - GPC = derive2 { name="GPC"; version="0.1"; sha256="1naqy5g6a0z65wssfic5s7cw9v0zjckk526nian3l98ci22sz0j7"; depends=[ks lars orthopolynom randtoolbox]; }; GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-1"; sha256="1qlbs9xxdn7q90afh5zc6fgp213fxyh3xmmhz5dm6azbwx92x3la"; depends=[car caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos wordcloud]; }; GPCSIV = derive2 { name="GPCSIV"; version="0.1.0"; sha256="118l792mwd54xsi3g8afg3vc6wds8j6fyaz3mwmq04mlcyblym4l"; depends=[scatterplot3d sqldf]; }; GPFDA = derive2 { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; }; GPGame = derive2 { name="GPGame"; version="1.1.0"; sha256="00qiqd7p84k22wbmlmj8a81fy5m5rl6afhj2q61j0akicnbzjfw9"; depends=[DiceDesign DiceKriging GPareto KrigInv MASS mnormt mvtnorm Rcpp]; }; GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; }; - GPM = derive2 { name="GPM"; version="1.0"; sha256="0k2mglgmq1hb0x9gdypvzgi7s3vkdpf6qcvgyd4qc3mfg3avbnmk"; depends=[lattice lhs randtoolbox]; }; + GPM = derive2 { name="GPM"; version="1.0.1"; sha256="0sqr2s9wcqh2giyslvkgprn22b4aigalx2dd9y57lz7kfljvril7"; depends=[lattice lhs randtoolbox]; }; GPPFourier = derive2 { name="GPPFourier"; version="2.1"; sha256="1wlzpiqlg5zx3rv29l1ql3apcaykvk72zc0anwxr152qlk910l2q"; depends=[mFilter Tides]; }; GPareto = derive2 { name="GPareto"; version="1.1.1"; sha256="100r7v7vdkd8i8asb8fnz86rgmkd9kd5bnrc7kdzndfg6jsyycrg"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.1"; sha256="0n1fnmwiygispihqgcx762wkvp28pnm8kcwlx9vxhpafswsp112q"; depends=[deSolve rgl]; }; - GPrank = derive2 { name="GPrank"; version="0.1.2"; sha256="0z9xhydnq04p872zl7glxhndmijjihfgffl6bijc9a0rs95zaacd"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; - GPseq = derive2 { name="GPseq"; version="0.5"; sha256="0k5xif44qk2ppvcyja16xshmfciq1h84l1w6d8dfkyryfajbc8ai"; depends=[]; }; + GPrank = derive2 { name="GPrank"; version="0.1.3"; sha256="118v08kyp0s8j24cmfyyzj8klgd4g3jqi1x5l76w1iznnlpyd6kf"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; GPvam = derive2 { name="GPvam"; version="3.0-5"; sha256="0inhhx5ll4ybkwp71ijigxlyxsa0rdyxb38kgfgxb588dsk4scjz"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; - GRANBase = derive2 { name="GRANBase"; version="1.6.8"; sha256="1pcm0fy3jwwaifd4m7qyil1miaxmi6v7glp2krbkngp6f8qb0bph"; depends=[covr dplyr hexSticker htmlTable jsonlite RCurl sendmailR stringi switchr]; }; + GRANBase = derive2 { name="GRANBase"; version="2.5.0"; sha256="1sc7f47dnrwww89v4n8y41zvc9z8i8lv7qgya6nwf98vh9b6ifmi"; depends=[covr dplyr GRANCore htmlTable jsonlite markdown RCurl sendmailR stringi switchr]; }; + GRANCore = derive2 { name="GRANCore"; version="0.2.2"; sha256="0f4w5nyqnfq20apqrc7harg4capxrr648wfbgghdg18j3gh3spdc"; depends=[switchr]; }; GRAPE = derive2 { name="GRAPE"; version="0.1.0"; sha256="0kcyz8x6yzq83hcwdlx7yw5jpww819f9d1hax19vn31ccq71xkyw"; depends=[]; }; GRCdata = derive2 { name="GRCdata"; version="1.0"; sha256="0nshii6kfvffncgcrmm7wvniq94j9djj84jikcb6ck49viikkrky"; depends=[cubature nloptr]; }; + GREP2 = derive2 { name="GREP2"; version="1.0.0"; sha256="1nzy8v4xjvaw5zsmbfxljfmy78njd3mw7rkgh6k6c0mf30mrb51i"; depends=[AnnotationDbi Biobase EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 GenomicFeatures GEOquery org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db RCurl rentrez tximport XML]; }; GROAN = derive2 { name="GROAN"; version="1.1.0"; sha256="06xcbdcg3rmb9939d9ansy75jn0axy0c36rmgjhcji8gf959kmyz"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.1"; sha256="1ap9453rj5zan6c3ix7jb1qxhxh42bfv295dgqbgjpdygjdlbm6n"; depends=[]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; - GRaF = derive2 { name="GRaF"; version="0.1-12"; sha256="1d7mr2z49v6ch4jbzh0dj2yjy2c5p51ws38xfz233sjz475snajr"; depends=[dismo]; }; GSA = derive2 { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; }; GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; + GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; GSCAD = derive2 { name="GSCAD"; version="0.1.0"; sha256="0a5smd1prfi6n58ghhz5v81p88v3cnmk2v6r0nn9gy7sa1r2z8xc"; depends=[fields Matrix Rcpp RcppArmadillo]; }; GSE = derive2 { name="GSE"; version="4.1"; sha256="00pvpramk7n3195i3vkmp982igyc1b0xzjqs7xdsvzsnfv7kpcbh"; depends=[cellWise ggplot2 MASS Rcpp RcppArmadillo robustbase rrcov]; }; - GSED = derive2 { name="GSED"; version="1.6"; sha256="0zvj91a3sbpgy4988xzmz6xa73rn8b2hkh67jryahm2l5azigsng"; depends=[coin memoise rootSolve survival]; }; + GSED = derive2 { name="GSED"; version="1.7"; sha256="1w8kim7qfrx28bx4l4qkfghwysmyhm7xa0pjagvrh5ar35m4ga67"; depends=[memoise rootSolve survival]; }; GSIF = derive2 { name="GSIF"; version="0.5-4"; sha256="1vh3dffi5hakk32rwaabw9k34wigd0n5bhzcyqhadl6fxjsaz6b6"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; GSMX = derive2 { name="GSMX"; version="1.3"; sha256="1n1d7rixj14ari46snsmi48qfmy00ihmzvayk3hkrp2d2d0xi2gh"; depends=[MASS]; }; - GSODR = derive2 { name="GSODR"; version="1.2.0"; sha256="0zhj2c51mxkdy2z7bllas1qb5jg83263w9vv6iksy5j47vxm2py8"; depends=[curl dplyr magrittr purrr R_utils readr rlang tibble]; }; + GSODR = derive2 { name="GSODR"; version="1.2.1"; sha256="0nmr5pmwxmriaf16r39hs85g2qfzz3k176klgvlmp4shg4ln2p64"; depends=[curl dplyr magrittr purrr R_utils readr rlang tibble]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; GUIDE = derive2 { name="GUIDE"; version="1.2.3.1"; sha256="02chn2mzh6smmiv8rp00cq5rff18bqszazbk8svmvvlgn0a25pj4"; depends=[rpanel tkrplot]; }; @@ -1382,9 +1386,9 @@ in with self; { GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASinlps = derive2 { name="GWASinlps"; version="1.1"; sha256="1041yb5zn27a9srylmawj2kbkcsjz65x0apa413wyb32pz73l6ni"; depends=[horseshoe mombf]; }; GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; - GWLelast = derive2 { name="GWLelast"; version="1.1"; sha256="0c3mcvmvxvgibja6rb8j2mhmmjny825wgvi1dw0pz8pq1kg1q0ay"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; + GWLelast = derive2 { name="GWLelast"; version="1.2.1"; sha256="1g6xmw93jl9cv3c7p76wk3lq8qhqxgjhmn1cgiyyy5jbf14gbasv"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.3"; sha256="16ahlf1pbcpgha50a7ml2c336by50r287kihwshiazshifi5p3n3"; depends=[doParallel foreach]; }; - GWSDAT = derive2 { name="GWSDAT"; version="3.0.0"; sha256="1nyvbaxfh2hp3nk1lw6aksq2cjj2w4qa1cy7vjkrisl2dz0nfi2z"; depends=[deldir geometry Kendall lattice MASS Matrix readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; + GWSDAT = derive2 { name="GWSDAT"; version="3.0.1"; sha256="1v93fbbpmbcigi1m9vyzrgcbnrrpgh7h963vicwy9ilzc06vhm68"; depends=[deldir digest geometry Kendall lattice MASS Matrix officer readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; GWmodel = derive2 { name="GWmodel"; version="2.0-5"; sha256="1v0a2fxs1nfm84vrggj1zmbij6kqzc5mgmqlvrh80hj3w87zpiry"; depends=[maptools Rcpp RcppArmadillo robustbase sp spdep]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; @@ -1394,9 +1398,7 @@ in with self; { GauPro = derive2 { name="GauPro"; version="0.2.2"; sha256="127agnhqbbavcf7sx0zq1c8ldh3w1d1iz5bpd1ixxkyaapmiq4qy"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-1"; sha256="1xjz22m4yn642m0bqa33w4m2rygpxjwg43c54lw168jck9zzgv1f"; depends=[nlme raster rgeos sp spatialEco spdep]; }; - GenABEL = derive2 { name="GenABEL"; version="1.8-0"; sha256="0sd497qvik70iwv7wc8r50rhc5wx153pm8vif738wwqqp43chks3"; depends=[GenABEL_data MASS]; }; - GenABEL_data = derive2 { name="GenABEL.data"; version="1.0.0"; sha256="0p66fb0gynjx3mnfvnlz45cbn6xf49gwx9mfyxf584xfcggxaa1c"; depends=[]; }; - GenAlgo = derive2 { name="GenAlgo"; version="2.1.3"; sha256="00lr13kvkmw7zgg6b67yba0qym24vqb09xm94rwh2wd5mbh2fh2v"; depends=[ClassDiscovery MASS oompaBase]; }; + GenAlgo = derive2 { name="GenAlgo"; version="2.1.4"; sha256="1mgdvzc5dd7d1wlk8c7d8gd9b2di16mjmyd2i3am05jfw3q26ahv"; depends=[ClassDiscovery MASS oompaBase]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; }; @@ -1409,10 +1411,10 @@ in with self; { GeneNet = derive2 { name="GeneNet"; version="1.2.13"; sha256="0w52apk0nnr8nsskf26ff7ana8xiksr8wqmkjxzwhzgg7fncm61p"; depends=[corpcor fdrtool longitudinal]; }; GeneReg = derive2 { name="GeneReg"; version="1.1.2"; sha256="081qc66mb17dwk886x9l2z4imklxnfs02yqql0ri9c47bpsga7wp"; depends=[igraph]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; - GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-1"; sha256="0rx07z5npawvsah2lhhkryzpj19sg0sl0w410gmff985ksdn285m"; depends=[DistributionUtils RUnit]; }; - GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.0.0"; sha256="1r63ikfv5s1f3agl6i2ny84yzky0macxmknkavnzbn4sqb8cmrbd"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; + GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.1.2"; sha256="13dyzd2xspiw709iq1xw8lsik8q7abz327x11cdn02zalizvw5ip"; depends=[ggplot2 Rcpp RcppArmadillo]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; - GenomicMating = derive2 { name="GenomicMating"; version="1.3"; sha256="1qnxr1dxw7xk6zncvql1lq4zba8vdfprhjgq56lzv1dckfddzfgc"; depends=[emoa Rcpp RcppArmadillo scatterplot3d]; }; + GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.6"; sha256="19illcfcm34vr90kh4cbdwf7k8hy700dlzylsaicv3h4xi7iydgs"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; @@ -1422,13 +1424,13 @@ in with self; { GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; GerminaR = derive2 { name="GerminaR"; version="1.2"; sha256="10x22xl3r93i5mc6w7m5mqm3z386dsffwrb8h9c1bznrnynnsy63"; depends=[agricolae assertthat dplyr DT ggplot2 gsheet gtools magrittr readxl shiny shinydashboard tibble tidyr]; }; - GetDFPData = derive2 { name="GetDFPData"; version="0.6"; sha256="19srfls3fmxbjhwhsc3r76n34ls8s5940d831j4n93f4lzq33wyp"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; + GetDFPData = derive2 { name="GetDFPData"; version="0.7"; sha256="0c8cdx0hgcnrsppmq7vk70ivhczlb4blqfghqb9rni295r3hzd47"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; GetHFData = derive2 { name="GetHFData"; version="1.5"; sha256="1lm2k37y86fn45hhvyswj60dql0m33kia0wirs3zc981s4nsxp0i"; depends=[curl dplyr lubridate RCurl readr stringr]; }; GetITRData = derive2 { name="GetITRData"; version="0.7"; sha256="0cmqbncd5bjxgb1r9yvdv2hkx4qdmnpn2a62bgndnaya1yk5050l"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; GetLattesData = derive2 { name="GetLattesData"; version="0.9"; sha256="1rqhs8039m3ar76nail7gavw6678zs20r9dg98rp5igqx5jjys73"; depends=[curl dplyr readr stringdist stringr XML]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; GetTDData = derive2 { name="GetTDData"; version="1.3.1"; sha256="1a8f22nxs85g2zznh1ma37lmycypg8f7d5kdhyb5vrirvrpi5p05"; depends=[bizdays curl RCurl readxl stringi stringr tidyr XML]; }; - GetoptLong = derive2 { name="GetoptLong"; version="0.1.6"; sha256="1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"; depends=[GlobalOptions rjson]; }; + GetoptLong = derive2 { name="GetoptLong"; version="0.1.7"; sha256="1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr"; depends=[GlobalOptions rjson]; }; GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; }; GiRaF = derive2 { name="GiRaF"; version="1.0"; sha256="02356cq0g6v5m72fy5z83bw3nsb7kpc9sy7sykk97735n928z92n"; depends=[BH Rcpp RcppArmadillo]; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; }; @@ -1437,10 +1439,10 @@ in with self; { Giza = derive2 { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; - GlobalOptions = derive2 { name="GlobalOptions"; version="0.0.13"; sha256="04jvha0mafslqz5nr99xjylg9n2x31gj9v4mgyg7qcmfwpqyw3ch"; depends=[]; }; + GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.0"; sha256="1wlyqz1yhmhjwslrd7q69jbd9vsbjkjfc01g60kl3cdpyr8hlyjn"; depends=[]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.4"; sha256="0lr1hwprqy9mq5qyp83qqxj8dh5sy487xkqbv2y1qdinzj62pvcn"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; - Gmisc = derive2 { name="Gmisc"; version="1.5"; sha256="0jiyqi0mmwbb7v8jqksvm42r4sq1d5najqkapnpj5jzn6izq6vh5"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; - GoFKernel = derive2 { name="GoFKernel"; version="2.1-0"; sha256="17jd1dqwpki4mmzk695g25vvfwvkp4k7jhvw06dmdmn5j09hw373"; depends=[KernSmooth]; }; + Gmisc = derive2 { name="Gmisc"; version="1.6.2"; sha256="15ax691xk14y7qxnr1d0qbzb7y3ikv0x4qgsn4ss9z6b0hqclc84"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; + GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; GofKmt = derive2 { name="GofKmt"; version="2.0"; sha256="0018ljzlj7nkf12g0sqa8iyq3j2bnj9la3fwblx9lbdn8nxgllhn"; depends=[Rsolnp]; }; GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.2"; sha256="1qwarachkhc2yvjyxfcfbgjc1x9ni5xb7f93zviv8mz3c35bhs3b"; depends=[classInt corrplot]; }; GoogleKnowledgeGraphR = derive2 { name="GoogleKnowledgeGraphR"; version="0.1.0"; sha256="1jxiq1s48skn43pydsw8s67hf70v9fhhw2drcx9vni3c3szs44qd"; depends=[curl jsonlite]; }; @@ -1448,21 +1450,20 @@ in with self; { Grace = derive2 { name="Grace"; version="0.5.3"; sha256="0r41zvgdd5rqm15axqqssik6plwy7snpgw8m32labkfn3f0pp7n0"; depends=[glmnet MASS scalreg]; }; GrammR = derive2 { name="GrammR"; version="1.1.0"; sha256="1rwvgznfxp7d3rzymyljj3pn3z3ggia1bhi4nvpgd79qd4cifi2g"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; }; GraphFactor = derive2 { name="GraphFactor"; version="1.1"; sha256="1jxibd2d5b6vlq27m9ppmm96wsnkqn4pz66n9pwdl8wg2v85npw5"; depends=[igraph]; }; - GraphKit = derive2 { name="GraphKit"; version="0.5"; sha256="1ip0rkrwxpjcd9mhz2z8n7lwdrjj1idymsafm8aac1hfbxr6c0xz"; depends=[Rcpp RcppArmadillo]; }; GraphPCA = derive2 { name="GraphPCA"; version="1.1"; sha256="0x6j3lyd70zc0c1al1407ma8crzi174d5dqkz6lx4vx24knrlhbs"; depends=[FactoMineR ggplot2 ggplot2movies scatterplot3d]; }; GrapheR = derive2 { name="GrapheR"; version="1.9-86"; sha256="1iizknyrpgiz1fh1fjls58n5v5fpki25j7kfbwfkp5ijf1q54ml6"; depends=[]; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; }; GreedyEPL = derive2 { name="GreedyEPL"; version="1.0"; sha256="19b8fwxsjd6shwjxhpawa8pmlj6yn0j4577g6b93xbcs76wgrvd1"; depends=[Rcpp RcppArmadillo]; }; - GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.1"; sha256="0r6b8hzzx0ja0skp4w4s49jpkkjbb3an62vp74qh5sf2wi1hx9x6"; depends=[rJava]; }; GreedySBTM = derive2 { name="GreedySBTM"; version="1.0"; sha256="1r29cd8nxpyc82rz2xb9mk9wc17gcdlcl9lw1j3y4npr2z0qhf13"; depends=[Rcpp RcppArmadillo]; }; - Greg = derive2 { name="Greg"; version="1.2.1"; sha256="0li05w2nbqvabhwwmhxiwjalr1q79xad9yd2vycpz198c048kiqf"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; + Greg = derive2 { name="Greg"; version="1.2.2"; sha256="0drp9qf7yid88vcd2q2qdw23l1jynircffqnylznz8xzyh4qv7ik"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; Grid2Polygons = derive2 { name="Grid2Polygons"; version="0.2.1"; sha256="0db5kv0rbsg077h2badw28x9363ymqkr52sw5wlg9x1bk9cczhi7"; depends=[inlmisc raster rgeos sp]; }; GriegSmith = derive2 { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; }; + GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; GroupSeq = derive2 { name="GroupSeq"; version="1.3.5"; sha256="0c74nlsqa5ly0kf6p4n7gfvd0ygkq78bx851ryniwpnnalvsq8l7"; depends=[]; }; GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; GrpString = derive2 { name="GrpString"; version="0.3.2"; sha256="14ss6assqk6s9kv4bvzlydm8qrbnslm4vj876q5dn2dw4k50dai1"; depends=[cluster plyr Rcpp]; }; GsymPoint = derive2 { name="GsymPoint"; version="1.1.1"; sha256="1fg8vqd86kcpciphmlcxlm0rk01iza7md5y8kcxp9i732n4zn7r8"; depends=[ROCR Rsolnp truncnorm]; }; - GuardianR = derive2 { name="GuardianR"; version="0.8"; sha256="07bg7wz7d2rgjkw5ldzi5p7nd4ch39m6ql5w4sqnvds4r08jspj9"; depends=[RCurl RJSONIO]; }; + GuardianR = derive2 { name="GuardianR"; version="0.9"; sha256="0z0bgm3kr7yqx0yfzhs07k1gs97zpjajfnxn1w1m5w76s7czfzl7"; depends=[RCurl RJSONIO]; }; Guerry = derive2 { name="Guerry"; version="1.6-1"; sha256="1hpp49w2kd1npsd709cwg125pw6mrqxfv2nn3lcs1mg2r49ki2bl"; depends=[]; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; }; HAC = derive2 { name="HAC"; version="1.0-5"; sha256="0dc79qjhyydq0k4d8wvg970hs56i9yhxjrh5ky9a178ya61vw208"; depends=[copula numDeriv]; }; @@ -1472,20 +1473,20 @@ in with self; { HBP = derive2 { name="HBP"; version="0.1.2"; sha256="0khw15xj3k40bsdbbs1m5ad1ykji3fx0549697c1svhkm7zrrny4"; depends=[BiocInstaller coin flexclust ggplot2 gplots HiTC igraph lattice multcomp OmicCircos pgirmess reshape2 rtracklayer]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; }; HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; }; + HCmodelSets = derive2 { name="HCmodelSets"; version="0.1.1"; sha256="0xyaap718x01g2w5gk6yz3s87zvxfymhfn5klazn16jh8v446m4f"; depends=[ggplot2 mvtnorm survival]; }; HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; HDGLM = derive2 { name="HDGLM"; version="0.1"; sha256="0a5lnh3780lsczj8339sp97c5y64a2gsdf77i56fvpxpphq0dnf8"; depends=[]; }; - HDInterval = derive2 { name="HDInterval"; version="0.1.3"; sha256="1zjddw8s6xc2gsz6285g3dzzarnhb77sra1dbxghgn2nrgn2y0i5"; depends=[]; }; + HDInterval = derive2 { name="HDInterval"; version="0.2.0"; sha256="1y51q0dwav3x7c0vp571v89vq1a5mivsxsyahqrv1la12zw0m7il"; depends=[]; }; HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; HDPenReg = derive2 { name="HDPenReg"; version="0.93.2"; sha256="0blmp7cwsklp8aqdcyyjmv419cgc7iz0pb4629y8slqw0zq2n6gm"; depends=[Matrix Rcpp rtkore]; }; - HDclassif = derive2 { name="HDclassif"; version="2.0.2"; sha256="0gykjqqhrqz1x9xl867hxhrp197y3x4679zh9v84i1nd9yxlamah"; depends=[MASS rARPACK]; }; + HDclassif = derive2 { name="HDclassif"; version="2.1.0"; sha256="1d79wki03yyr3hqz44xlx07msmxb59sm2mrq2za34fdbvvrmw58v"; depends=[MASS rARPACK]; }; HDoutliers = derive2 { name="HDoutliers"; version="1.0"; sha256="0pby640bad0jcf1lkwg2g6flassb1pimnjm411c6x8rgvmiphc23"; depends=[FactoMineR FNN mclust]; }; HDtest = derive2 { name="HDtest"; version="0.1"; sha256="0vlwpx9l6r0izfcf9fgna72w39w64b95s3q527mapjb6a3676avg"; depends=[checkmate doParallel expm foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; - HEAT = derive2 { name="HEAT"; version="1.2"; sha256="1qifqd06ifl0f5l44mkxapnkwhpm0b82yq6dhfw4f8yhb27wd0z2"; depends=[]; }; - HEMDAG = derive2 { name="HEMDAG"; version="2.0.1"; sha256="1sdgcc1adf21zd6qy48wkvnfakgpx7c4f750hnp8vjpanlrizp1w"; depends=[graph PerfMeas precrec preprocessCore RBGL]; }; + HEMDAG = derive2 { name="HEMDAG"; version="2.1.3"; sha256="110c37y08ivqvh5qcn6plsxf7ariqwdx6my7xv83kj2v570a4qiw"; depends=[graph PerfMeas precrec preprocessCore RBGL]; }; HGNChelper = derive2 { name="HGNChelper"; version="0.3.6"; sha256="1bm6zxwafbp65p6w4rk2y1bw7ig60br2mk75c4frdzqw3yw0zwxd"; depends=[]; }; - HH = derive2 { name="HH"; version="3.1-34"; sha256="1srr195ha8n4va30impm12p2kamkl36whl8g10pl80hwgg20pbqk"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; + HH = derive2 { name="HH"; version="3.1-35"; sha256="0sykmmipbph9x7k371liiyj2vmqv0as2hr9x6yrn38ls6bscjlj4"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; HHG = derive2 { name="HHG"; version="2.2"; sha256="114nfpdjdisryil9l8cws885qdskgrjm2cclx543hh4cdhpnkxnp"; depends=[Rcpp]; }; HI = derive2 { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; }; HIBPwned = derive2 { name="HIBPwned"; version="0.1.7"; sha256="04l9309lmgn33gdwm162g6vywz8p9sdgmy2baxj98jv7x791wj3r"; depends=[crul jsonlite memoise ratelimitr urltools]; }; @@ -1495,30 +1496,29 @@ in with self; { HK80 = derive2 { name="HK80"; version="0.0.2"; sha256="0c8scpzl5xgqm9rlsvh5nl3bz42i5pzvb873j9bn3bi15gcknbny"; depends=[]; }; HKprocess = derive2 { name="HKprocess"; version="0.0-2"; sha256="1j2yhb7k8zf4nlzdf0p6x9ca7ak4lwwak8mcc60kpilw2fws27k5"; depends=[gtools MCMCpack]; }; HLMdiag = derive2 { name="HLMdiag"; version="0.3.1"; sha256="02pgvfyj3xpy7laxryqivsws8jl3m79fwfzpqj8ad794a06gh87g"; depends=[ggplot2 MASS Matrix mgcv plyr Rcpp RcppArmadillo reshape2 RLRsim]; }; - HLSM = derive2 { name="HLSM"; version="0.7"; sha256="0cj4mbg7vamlabxynik59n5l3w5fiwa84qypprr8wr7ms2aimfa0"; depends=[coda igraph MASS]; }; + HLSM = derive2 { name="HLSM"; version="0.8"; sha256="1503n1qb91ca2m37g4lfzgzh1kh5l74g7z1r9s5grsj2s9by0ayh"; depends=[coda igraph MASS]; }; HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.1.8"; sha256="15z0war5isw9xnln7py3di8f45pwvdw6x6wljl18fcxpmanmlfcf"; depends=[RCurl XML]; }; HMM = derive2 { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; }; HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; }; HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.0"; sha256="19iwy0nj0vw3cslrfdai1l1yg84c5diyxpy65jd2f419ag3rmki3"; depends=[Rcpp RcppArmadillo Rdpack]; }; HMMoce = derive2 { name="HMMoce"; version="1.0.0"; sha256="0w2hrqjz75j9l6wimz9rsr8bwa5rvag0pavmyqkcb8jgqdgka8hx"; depends=[curl doParallel dplyr fields foreach imager locfit lubridate maptools raster RColorBrewer rgeos RNetCDF sp]; }; - HMMpa = derive2 { name="HMMpa"; version="1.0"; sha256="14r2axg42by49qm6avgv7g3xnc29bxlrni5fhc5vdz0wygkcrqhn"; depends=[]; }; HMP = derive2 { name="HMP"; version="1.5.1"; sha256="0v32pkgr9rhpz77y18z356lc68hcncbszawwqsldwhwc8dvb3rwn"; depends=[dirmult doParallel foreach ggplot2 gplots lattice MASS rpart rpart_plot vegan]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; }; HMR = derive2 { name="HMR"; version="0.4.2"; sha256="0rbpghih99avaq803f6hb66pfbqgzh1i2yaqs0mhbj61yyjzyb7b"; depends=[]; }; HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; - HRM = derive2 { name="HRM"; version="0.8.0"; sha256="0p6m73l6i9psa3xh2l02c6r2f2wiysn5nharyryz0p50rz7ajhls"; depends=[ggplot2 MASS matrixcalc plyr reshape2 xtable]; }; + HRM = derive2 { name="HRM"; version="0.9.1"; sha256="0pv3lly5rm620868mkka3m0hp5k2yrpymwdjdh19s4vdj4xjnb15"; depends=[data_table ggplot2 MASS matrixcalc plyr pracma reshape2 xtable]; }; HRQoL = derive2 { name="HRQoL"; version="1.0"; sha256="1gr9rhr8gdnh7bw2v3r0xc3yhmzrx2gzgsd8wd5mmsp81ph0h5lz"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; HSAR = derive2 { name="HSAR"; version="0.4.2"; sha256="0rxb2klmyynr8rzq6ka8p40lw81wjd0jkw2wg3vg90zny0zps98j"; depends=[Rcpp RcppArmadillo spdep]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-9"; sha256="0b2hyn59lr2pma87fcj7mli3qmrbnfhgd8fv02fa317rj52399qz"; depends=[]; }; HSAUR2 = derive2 { name="HSAUR2"; version="1.1-17"; sha256="0jc554lz5lj7180vd4rbrjkywar4bh38c7i9kyxhd5clg4afxpw8"; depends=[]; }; - HSAUR3 = derive2 { name="HSAUR3"; version="1.0-8"; sha256="0s3m771l83psfwk6dqw2zf0vyvk5v2h730b5nwaky9xvgvp0mrms"; depends=[]; }; + HSAUR3 = derive2 { name="HSAUR3"; version="1.0-9"; sha256="1rpvblak0xvkavbvbd35zq1lcsl5z1zp30vn70wqbkdj7szhj9b4"; depends=[]; }; HSSVD = derive2 { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; }; HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; }; HTSCluster = derive2 { name="HTSCluster"; version="2.0.8"; sha256="0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"; depends=[capushe edgeR plotrix]; }; - HTSSIP = derive2 { name="HTSSIP"; version="1.3.2"; sha256="0y5xqpq55x1q4afs9qwn949y6f4f11fl9zxn2ffzv17zsia7b7xl"; depends=[ape coenocliner DESeq2 dplyr ggplot2 igraph lazyeval magrittr phyloseq plyr stringr tidyr vegan]; }; + HTSSIP = derive2 { name="HTSSIP"; version="1.4.0"; sha256="04wfwbi57rxjd69inagvj3qricshwia16k6d2r4fgg9wmikgx4yv"; depends=[ape coenocliner DESeq2 dplyr ggplot2 igraph lazyeval magrittr phyloseq plyr stringr tidyr vegan]; }; HUM = derive2 { name="HUM"; version="1.0"; sha256="1bq74l88jvscmq9ihv5wn06w2wng073ybvqb2bdx2dmiqlpv6jw2"; depends=[gtools Rcpp rgl]; }; - HURDAT = derive2 { name="HURDAT"; version="0.1.0"; sha256="074c5spfsg4f3hg9f316wz72m2j3kvycl8hb4j7i7z62wswgi420"; depends=[dplyr lubridate magrittr purrr readr stringr tibble tidyr]; }; + HURDAT = derive2 { name="HURDAT"; version="0.2.0"; sha256="12l087j2bak9yzmwvxaamjysmqih3jzrvv5cgmx9xzl548wk9vv4"; depends=[dplyr lubridate magrittr purrr readr stringr tibble tidyr]; }; HW_pval = derive2 { name="HW.pval"; version="1.0"; sha256="14nmyqw2d9cmn64789yc54fmiqanh6n1dizp7vj94h7b0jwq63yy"; depends=[]; }; HWEBayes = derive2 { name="HWEBayes"; version="1.4"; sha256="1rbffx6pn031a278ps9aqxcaq8yi73s5kf60za143ysbfxv9dphw"; depends=[MCMCpack mvtnorm]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; @@ -1528,9 +1528,9 @@ in with self; { HandTill2001 = derive2 { name="HandTill2001"; version="0.2-12"; sha256="1rijjv27zwdznznvwlb5hahixmfxayr6vs11p1mzwqma8qhsn5ak"; depends=[]; }; Hankel = derive2 { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; HapEstXXR = derive2 { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; }; - Haplin = derive2 { name="Haplin"; version="6.2.1"; sha256="13kix0skxk35zgwci1fwxkqm8bxbsxf5kid7qs88ib9pgix7qg41"; depends=[DatABEL GenABEL MASS mgcv snow SuppDists]; }; + Haplin = derive2 { name="Haplin"; version="7.0.0"; sha256="1hdclx33ndjgz4xvg8myngzslcrmvc994nlgf3hp3km3591j62rj"; depends=[ff ffbase MASS mgcv snow SuppDists]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; - HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.5.9"; sha256="0qk3lly5qczn61rj0q9xzscppspvk238yjgr4p71pkzkjhiv40jz"; depends=[mice Rcpp Rsolnp]; }; + HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.6.1"; sha256="16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz"; depends=[mice Rcpp Rsolnp]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; HelpersMG = derive2 { name="HelpersMG"; version="3.0.0"; sha256="1y5q4z9yxap16bkcjsybm2754wm0x31hfqdnp2bb4gbvhz1jhas6"; depends=[coda]; }; @@ -1542,6 +1542,7 @@ in with self; { HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive2 { name="HiDimDA"; version="0.2-4"; sha256="0gxkxzys9mcy33xvsim8klaqmb2xwvy5bvgkn9r400j4qfjd3cgg"; depends=[]; }; HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; }; + HiResTEC = derive2 { name="HiResTEC"; version="0.52"; sha256="1kci3kxrf96ba9vawh2ln1rhpzyfkj259v8iyhrdrnhq58xrvkf5"; depends=[beeswarm Biobase InterpretMSSpectrum openxlsx plyr Rdisop xcms]; }; HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-11"; sha256="1yh85pdb9r90qxcl5gxslyplxzrx8knrrsl2q65l57zfkqj185ja"; depends=[]; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; }; HighDimOut = derive2 { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; }; @@ -1562,17 +1563,17 @@ in with self; { HydeNet = derive2 { name="HydeNet"; version="0.10.7"; sha256="001ifh5ddg7q4rckhi662zd9a8milfi3v2gmgy76x0wq2xph7yrj"; depends=[checkmate DiagrammeR dplyr graph gRbase magrittr nnet pixiedust plyr rjags stringr]; }; HydroMe = derive2 { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; }; HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; - IAPWS95 = derive2 { name="IAPWS95"; version="1.0.0"; sha256="1rw6i3a653m11fyza42jhbqi6607fiqgmq15qfn5bqhq8sdgmn9p"; depends=[ggplot2 pander Rcpp]; }; + IAPWS95 = derive2 { name="IAPWS95"; version="1.1.0"; sha256="03kggkcyvbgh7l9haa1ljg0sv6f2rs06r6j0w2x7cpm31qmc3yzl"; depends=[ggplot2 pander Rcpp]; }; IASD = derive2 { name="IASD"; version="1.1"; sha256="1slhd42k639mbyxccl7n69p7ng2qx6pqag8wz3kdwn479spkavzn"; depends=[]; }; IAT = derive2 { name="IAT"; version="0.3"; sha256="110rn2q09gspfd4msyh30dllxdxdraffkr18h1nm72brzhmx9cfi"; depends=[dplyr ggplot2 lazyeval]; }; IATScore = derive2 { name="IATScore"; version="0.1.1"; sha256="0sg4apj1sp0xc311cbkvflhv9kw1jxvjhdr0xjw79s662mnhkhgz"; depends=[]; }; + IATanalytics = derive2 { name="IATanalytics"; version="0.1.1"; sha256="10g9iscfjmlxrkzls9320h9azpc5fnhh6276p7zn8sxqgp1nvnz9"; depends=[]; }; IATscores = derive2 { name="IATscores"; version="0.2.1"; sha256="1nm07wlrnjx36wr3jbv2faayh1vrlfid124b27w9v0x0dk145i82"; depends=[dplyr qgraph reshape2 stringr]; }; IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; }; - IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.2-5"; sha256="1b5fsrbqycz8zgpxk3vc48cba7vb818rw5hgmf92q11azm4n1q5s"; depends=[lsa tidyr]; }; + IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.3-2"; sha256="16ynw5p26cyji6g5k7nhq56p5h86rrkrh9xr85kajb1f3dr6rmyw"; depends=[lsa tidyr]; }; IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; }; IBDsim = derive2 { name="IBDsim"; version="0.9-7"; sha256="1wq0w9d4kwvq1hc5l0m8wrqfhnncapmnrh29x9vvafv50ym7yb3l"; depends=[paramlink]; }; - IBHM = derive2 { name="IBHM"; version="1.1-11"; sha256="1m0zxlybcak2v5c4spgaa39ngb2hryak4xd875jryk1dcnk9c702"; depends=[cmaes DEoptim Rcpp]; }; IBrokers = derive2 { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; }; IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; @@ -1583,7 +1584,7 @@ in with self; { ICCbin = derive2 { name="ICCbin"; version="1.1.1"; sha256="1pzlaj7w98pgrlg3zvpmdv0dpgi5gih0j73qv86ak75fkxvrnzzw"; depends=[]; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; }; ICEbox = derive2 { name="ICEbox"; version="1.1.2"; sha256="170gg2fg9307yc2b25lsj8d1zla0frjxl47qh0njlqlrpi8jmm7i"; depends=[sfsmisc]; }; - ICEinfer = derive2 { name="ICEinfer"; version="1.0-4"; sha256="0fa5mxj224jgppp09bblyi9w9racz5lb1i20npvnccafcm36f7y1"; depends=[lattice]; }; + ICEinfer = derive2 { name="ICEinfer"; version="1.1"; sha256="0q07npgnssia7assvl1084080w3w434viyz5r1lj5slrx9gfdh8b"; depends=[lattice]; }; ICGE = derive2 { name="ICGE"; version="0.3"; sha256="0xin7zml1nbygyi08hhg3wwr2jr1zcsvrlgia89zp4xanxlzgaqa"; depends=[cluster MASS]; }; ICGOR = derive2 { name="ICGOR"; version="2.0"; sha256="18fn10f5nqqbrfibqmp602nqpx794fy3gpxp1bd10xn48llhqfc4"; depends=[ICsurv MASS pracma survival]; }; ICRanks = derive2 { name="ICRanks"; version="1.3"; sha256="0n8gyqlwx38v2lfx7r49h43k2f4z4ml78x3lq0sc952n4rckzgiv"; depends=[multcomp Rcpp]; }; @@ -1594,34 +1595,36 @@ in with self; { ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICcalib = derive2 { name="ICcalib"; version="1.0.7"; sha256="1p224srs1jakl7iyybcn9f6r9kcwxyrikdrfa9wjgkhz60pv88fs"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; - ICtest = derive2 { name="ICtest"; version="0.3"; sha256="0g4h6gkz6zp28a1hvrvm89wckx6sg5fqzy0flb97a6lh9xpmb83g"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey]; }; + ICtest = derive2 { name="ICtest"; version="0.3-1"; sha256="10wxx2b8m5h0k8f6lgf0z1xhvhr14dyrda2pf46w03fa23f5mb7l"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey]; }; IDCard = derive2 { name="IDCard"; version="0.3.0"; sha256="06b5zqmgh4clni3mv6ab2a52r4z34isbz0hd1i61793gps9fkc0y"; depends=[stringr]; }; + IDE = derive2 { name="IDE"; version="0.1.0"; sha256="0z8nc2h3ivy7prxh9ndg8q3inh6rmjg7x969gj7z6qbml3122zq8"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; IDF = derive2 { name="IDF"; version="1.1"; sha256="19fx04gvzwzkxbd453l3wx46s22dbnh0nxdrmsr4f7l67kihbwdr"; depends=[evd ismev]; }; IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; }; - IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.2.2"; sha256="0pfvdy82i5w6zrda2022m1v22dv2qsgcj1y7f8hqmaqvqgczizfk"; depends=[]; }; - IDTurtle = derive2 { name="IDTurtle"; version="1.2"; sha256="15r806vk5lmvyclsynzq9qr8pgwwkxal1j6xcq6408i8kq1hk3fb"; depends=[]; }; + IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.5"; sha256="05wxymvv1p7dik5y227qnp4w1lpdmqfp17zrk6iah8gyv9yjsvbh"; depends=[doParallel foreach igraph spatstat]; }; IDetect = derive2 { name="IDetect"; version="0.1.0"; sha256="1q1jwgildhx6sp883ni7vcsa3gj997855v5ky41dyf34kv7hvdl1"; depends=[]; }; IDmining = derive2 { name="IDmining"; version="1.0.4"; sha256="1jjxw9pdhd3wx5qnjnssf0j3bg91li1ar5ps02dhv0c49hslg0x0"; depends=[data_table doParallel foreach]; }; IFP = derive2 { name="IFP"; version="0.2.1"; sha256="06zyadcr8p6q0c5h9n29yl02ixysdj6lfbn9hfir0bk9hyv9yfyr"; depends=[coda haplo_stats]; }; + IFSPlot = derive2 { name="IFSPlot"; version="1.0"; sha256="0sydm9g54v5xy6m5rikx7q020aqvsilzcbg6c4vl79g9d2r8q07s"; depends=[gplots jsonlite Rcpp RcppArmadillo reshape2 rgl]; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; }; - IGM_MEA = derive2 { name="IGM.MEA"; version="0.3.5"; sha256="09k5di7bqlqi2m3jn39ahnf7x96wx1h06bw0ah6pdszwd97yy33i"; depends=[emdist ggplot2 gridExtra gtools lattice plyr reshape2]; }; IGP = derive2 { name="IGP"; version="0.1.0"; sha256="0xv89gmyfgnq5kzcmjbp5nx9zbr3gbdzkvffp99bxbkvf759m255"; depends=[PythonInR R6]; }; IHSEP = derive2 { name="IHSEP"; version="0.1"; sha256="1djc5509b5iyi6y0i36h77l6sq1h0w721v2isxqldcqk3gb0bx11"; depends=[lpint Rcpp]; }; IIS = derive2 { name="IIS"; version="1.0"; sha256="01h7nncxn1drnqf1h7snw0pvkgkn8dxq53k2sqcw3kdjlk5mj2l6"; depends=[asbio BSDA Hmisc NSM3 Rfit]; }; ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; }; IM = derive2 { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[bmp jpeg png]; }; IMFData = derive2 { name="IMFData"; version="0.2.0"; sha256="1mlxpsbyvh1zi8ivdblbd58zfv5hflnknbasz5z8xk9911czrn6p"; depends=[httr jsonlite plyr]; }; - IMIFA = derive2 { name="IMIFA"; version="1.3.1"; sha256="1xk2l1zk7arrbb8lxs5s03pjapks98xx8dfpic8qmha3qjlav90c"; depends=[abind e1071 matrixStats mclust mvnfast plotrix Rfast slam viridis]; }; + IMIFA = derive2 { name="IMIFA"; version="2.0.0"; sha256="09jsk7m0427z4wdpwip4p6idinvdnvc4c3s637p9z9lcgz54vszy"; depends=[matrixStats mclust mvnfast Rfast slam viridis]; }; IMIS = derive2 { name="IMIS"; version="0.1"; sha256="09zb48vdj0i3vf8vxrs07xwb9ji27vp2fyvmg6jfq631licsryc2"; depends=[mvtnorm]; }; IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; IMPACT = derive2 { name="IMPACT"; version="0.1.1"; sha256="0ai22gvmfj9j00cw742szfqqay63b5lmnszkwwdfdvidls43v0bm"; depends=[]; }; IMTest = derive2 { name="IMTest"; version="1.0.0"; sha256="0n0swbi051cr7mrjmszqg79hxa38ccyq69ws8c37ixwb0lpxmx48"; depends=[lme4 ltm MASS reshape2]; }; - IMak = derive2 { name="IMak"; version="1.1.2"; sha256="19si4hhvi8kddkp2kr1yw2bcw1qkk0i42saklvwk751gdmyzl9p3"; depends=[]; }; + IMak = derive2 { name="IMak"; version="1.2.0"; sha256="0h9hs9zpi7glf1i4gjl8xvz5hq23ask81mxpmfjpyxv03j1bwdih"; depends=[]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; + INDperform = derive2 { name="INDperform"; version="0.1.1"; sha256="08wp7zn0s61nl2r99r3712cxkhqp9xy2vghpjjcvr5y48dkw7kzf"; depends=[cowplot dplyr ggplot2 htmlwidgets jsonlite lazyeval magrittr mgcv nlme purrr RColorBrewer rhandsontable shiny stringr tibble tidyr vegan]; }; INLABMA = derive2 { name="INLABMA"; version="0.1-8"; sha256="13r89r14xpihfqddwzkhxg4jgxyl59826x2insrall3mj2yffj90"; depends=[Matrix sp spdep]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; - IPEC = derive2 { name="IPEC"; version="0.0.9"; sha256="02nzh8yq6nshnljxlkqyvd9spnqbcxfdlcr2zl33syhgqjsaz34h"; depends=[MASS numDeriv]; }; + IPCAPS = derive2 { name="IPCAPS"; version="1.1.5"; sha256="0d1nws86k1yph2f4drwrh4jvmmc9nnqmmswpwirmgsp3ma58kc42"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; + IPEC = derive2 { name="IPEC"; version="0.1.0"; sha256="1dcmjvqsz3hlfymnlsld9psalfvq7z51yx39dkd11d25cj1mf8na"; depends=[MASS numDeriv]; }; IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; }; IPMpack = derive2 { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; }; IPWsurvival = derive2 { name="IPWsurvival"; version="0.5"; sha256="0lmw0ifj8cds8lzyjkkv0i0zim23p0a3pawlhmhdm3nfvwawb853"; depends=[survival]; }; @@ -1629,22 +1632,23 @@ in with self; { IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; }; IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; }; IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.1.0"; sha256="033j0dba1bzbbjn7q827h4d1rw91z8gbr2bb119lds4v8zkkfpxx"; depends=[dplyr IRISSeismic RCurl seismicRoll signal stringr XML]; }; - IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.6"; sha256="1kccc4rbnyczdif7plvl3jfa3nfqfasybbbqmdkfiz0mhgvn1z4r"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; + IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.8"; sha256="0j419gn9jv9zpd2rzgsc6flz6k22gr11kany1av02cvs5dymwb4p"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IROmiss = derive2 { name="IROmiss"; version="1.0.1"; sha256="01l08s1g7h8cki372daa61pw3wac3pbv5d4yqnphg5p8ihsmrc5d"; depends=[equSA huge mvtnorm ncvreg]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRTpp = derive2 { name="IRTpp"; version="0.2.6.1"; sha256="10shzyiawk65pikawvhg58kx6fpvs1dazqmfjf3rfvly1lc0px1q"; depends=[FactoMineR MASS mvtnorm numDeriv Rcpp]; }; - IRdisplay = derive2 { name="IRdisplay"; version="0.4.4"; sha256="19l4flvik8zw2pany8dpjbrh0bji6bag6pmclgwqnq80532hnfp8"; depends=[repr]; }; + IRdisplay = derive2 { name="IRdisplay"; version="0.5.0"; sha256="1jwhcp9dp1kdqcx8zq6lzbczsm9rg5qlb8sd9aznpvn9a2745d9x"; depends=[repr]; }; ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; ISDA_R = derive2 { name="ISDA.R"; version="1.0"; sha256="0w6p2iy6s7fy8pw2cf4b5zhqcgjjwd5bkax1aqflaaj4ppmfx64v"; depends=[scatterplot3d]; }; ISLR = derive2 { name="ISLR"; version="1.2"; sha256="1bfay6cs40crhh34v2ksn4zdxivimfyjvk19wqbnjr7vs837l3xh"; depends=[]; }; ISM = derive2 { name="ISM"; version="0.1.0"; sha256="0by0w6zgnwcwzbmxx16s8mb1avhc6aiavqp0qkxx6hr70vrgb997"; depends=[rJava xlsx xlsxjars]; }; - ISOcodes = derive2 { name="ISOcodes"; version="2017.09.27"; sha256="1nnbp110fzlckbi6vdigrn275d3j7ixys0b8np8ran876piwddjp"; depends=[]; }; - ISOpureR = derive2 { name="ISOpureR"; version="1.1.1"; sha256="1mi0hl32wfgc7znvs1ay9i9lwdj022d88asdgcbs63vx335qg99w"; depends=[futile_logger Rcpp RcppEigen]; }; + ISOcodes = derive2 { name="ISOcodes"; version="2018.06.29"; sha256="0dzqfhrqb43bwkpblmzfx5viwgrd84sin461msczwdqx7b9da92a"; depends=[]; }; + ISOpureR = derive2 { name="ISOpureR"; version="1.1.2"; sha256="0z3i6l0c76kpfxihj3y9mldj10iw2lrb1r50v8bf20qrbxfckci1"; depends=[futile_logger Rcpp RcppEigen]; }; ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; }; ISwR = derive2 { name="ISwR"; version="2.0-7"; sha256="1rd1wrvl8wlc8ya5lndk74gnfvj9wp29z8617v3kbf32gqhby7ng"; depends=[]; }; ITGM = derive2 { name="ITGM"; version="0.6"; sha256="0acrm15vb1r0nnp0bp5zf8g27i3sy3d7bpd50lj0w1rl6dgwfznh"; depends=[data_table Fgmutils ggplot2 gsubfn plyr randomcoloR rbokeh sqldf]; }; - ITNr = derive2 { name="ITNr"; version="0.1.0"; sha256="0fxh7qs96w945sp7gnjk069rp1j8bj949r9c2skabw8bnkf5yi1k"; depends=[animation blockmodeling circlize cowplot dplyr fastmatch GGally ggplot2 GoodmanKruskal igraph intergraph Matrix ndtv network networkDynamic plyr RColorBrewer reshape2 sna statnet tnet WDI xergm xergm_common]; }; + ITNr = derive2 { name="ITNr"; version="0.2.0"; sha256="1bpnijwlrjg2l2qi9m5dlywq8xpb019kiqw288fzv6njm1yvwy56"; depends=[animation blockmodeling circlize comtradr cowplot dplyr fastmatch GGally ggplot2 GoodmanKruskal igraph intergraph maps Matrix ndtv network networkDynamic plyr RColorBrewer reshape2 sna statnet tnet WDI xergm xergm_common]; }; + ITRSelect = derive2 { name="ITRSelect"; version="1.0"; sha256="0zwgvcbjjd9wg19d36ygzsdkm04ndv91wg20wc3d78dbvyzy2kmh"; depends=[Formula Matrix ncvreg Rglpk svMisc]; }; IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; }; IalsaSynthesis = derive2 { name="IalsaSynthesis"; version="0.1.6"; sha256="15iwywvzhgiyigl8f488b7ra89rz0a7ymfsdgdlqfls3fmld7b4a"; depends=[testit]; }; Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; @@ -1654,13 +1658,13 @@ in with self; { Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; ImpactIV = derive2 { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; ImportExport = derive2 { name="ImportExport"; version="1.1"; sha256="12i9mwspk59zicn1mn21xrs90c8dqxm1q7alqbzscgkpf3xbjrnn"; depends=[chron gdata haven Hmisc RODBC xlsx]; }; - ImputeRobust = derive2 { name="ImputeRobust"; version="1.2"; sha256="0hr5payxqyk5nckwx84j5wqrj477219qbp76908aylwb7c7iw9n4"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; + ImputeRobust = derive2 { name="ImputeRobust"; version="1.3"; sha256="1mpccld9dw2v5rifla5g4qydcqkfagspnnq7r8if5lfm8mji33k3"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; InPosition = derive2 { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[ExPosition prettyGraphs]; }; - InSilicoVA = derive2 { name="InSilicoVA"; version="1.1.5"; sha256="15r3pdbwgnvk1qaqvb3m2xiczlv5jr7j7iwdgrxsn8n09q0aa4ds"; depends=[coda ggplot2 rJava]; }; - IncDTW = derive2 { name="IncDTW"; version="1.0.1"; sha256="0ycr46l1h1zxrw5kszfgl3w1f9law539fi7j1i3fb2s59n5kh2k5"; depends=[ggplot2 Rcpp scales]; }; + InSilicoVA = derive2 { name="InSilicoVA"; version="1.2.0"; sha256="12fqnim6n8ha1bm8vs6ni21s5h0jb9sny88hn0xy6nsgzzzwpw5i"; depends=[coda ggplot2 InterVA5 rJava]; }; + IncDTW = derive2 { name="IncDTW"; version="1.0.3"; sha256="19ppjpczbjv1bpzyyyasr5szblrsjimpc04hazhdgqzhil0v5sj2"; depends=[ggplot2 Rcpp scales]; }; IncucyteDRC = derive2 { name="IncucyteDRC"; version="0.5.4"; sha256="1k7jqcyx5n4my5rbyfa693ganbk91xganyagq8x8szli9h1491ii"; depends=[cowplot dplyr drc DT ggplot2 magrittr shiny tidyr XML]; }; IndTestPP = derive2 { name="IndTestPP"; version="1.0"; sha256="1ywl35k2syv46pz6ap5sjkynapqj04aq197czspqky0pvrq7ldr1"; depends=[]; }; - IndepTest = derive2 { name="IndepTest"; version="0.1.0"; sha256="0l9vfp34k4nhlg3nymj0gqkpjblzbbvnz0zcajvq4c8nw9968c5i"; depends=[FNN mvtnorm Rdpack]; }; + IndepTest = derive2 { name="IndepTest"; version="0.1.1"; sha256="1fiyafi22zs8cd42pnkf1psv4nxnrj7nk088pvk99hgasb7wjhpq"; depends=[FNN mvtnorm Rdpack]; }; IndependenceTests = derive2 { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; IndexNumR = derive2 { name="IndexNumR"; version="0.1.0"; sha256="1385j7a1hz8i5g00x1p1rd32gq243w2zrzvk781zjqdq7az33fsw"; depends=[]; }; IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.2"; sha256="1fxw884wj9n8drk2xz3rgr4f7b4fckh5firrf5gdz6d1nk9hdvc1"; depends=[]; }; @@ -1679,16 +1683,17 @@ in with self; { IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; }; IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; }; IntegratedJM = derive2 { name="IntegratedJM"; version="1.6"; sha256="0fv24z7vidhn09ljk09pjzkrlg2rlwxcrhfjc53ybjjgsgay99z6"; depends=[Biobase ggplot2 nlme]; }; - IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.8"; sha256="0y3hagjx3pzhqyqm3pydl3s3f1g9d5yb2w3ybxll11913p3gll3i"; depends=[bootstrap caTools ggplot2 limSolve MultivariateRandomForest Rcpp]; }; + IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.9"; sha256="0kklgc48cib4bjfs9qbw13nkp8xyjdazrg6z15x69jylnxyakic7"; depends=[bootstrap ggplot2 limSolve MultivariateRandomForest Rcpp]; }; InterVA4 = derive2 { name="InterVA4"; version="1.7.5"; sha256="0la99ylx8fnn4kpqa364nhs12y2hzp3sm0awsx5sfdv6n7m9js33"; depends=[]; }; - InterVA5 = derive2 { name="InterVA5"; version="1.0"; sha256="0lp75yinm1ph648s0jxgjixmn4q9g1rbky6hnppicpan2mk6d7ls"; depends=[]; }; + InterVA5 = derive2 { name="InterVA5"; version="1.0.1"; sha256="1wsaf48ajqnb9cb7h13jrinmszk6ayqim15fkgxbirmp88hcy9k1"; depends=[]; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.1"; sha256="1ljxgiia0y8wv1rlm5brd0yvs1r7r5wyrs6nykmwrwwya4k34mpz"; depends=[MASS tkrplot]; }; InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; Interpol = derive2 { name="Interpol"; version="1.3.1"; sha256="1598lnnrcxihxysdljphqxig15fd8z7linw9byjmqypwcpk6r5jn"; depends=[]; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; }; - InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.1"; sha256="00nhfz1hs2j1pqhwgw5c337kl1azr3vmlcd1krnl4fgs5yz6ksyq"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; + InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.2"; sha256="1iaw4i14l2vp1f163g2q4pwv9cnqrx14ik4s8zw0iha4zwcrc3ja"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; + IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.0"; sha256="0dpgfgnnx6r29y8y3pac1rgi503wvlwggx5dh6fhqnxw5yfink61"; depends=[Rcpp]; }; InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.7-1"; sha256="1pz06l50fm8327n1v8wnvh8q51g97crb4c07si3hywd5y1hkiwkp"; depends=[glmnet linprog mboost RColorBrewer]; }; InvasionCorrection = derive2 { name="InvasionCorrection"; version="0.1"; sha256="1wwx2kssjysl1lraac36pvxq34vg8qm0vwi861rs1iipfc35i84j"; depends=[lattice]; }; Inventorymodel = derive2 { name="Inventorymodel"; version="1.1.0"; sha256="1l87xghdksgmb2k3a8j382p7ffi2pma38a6pn31sfjsa6bgmrdnk"; depends=[e1071 GameTheoryAllocation]; }; @@ -1699,7 +1704,7 @@ in with self; { IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="1.0.3"; sha256="1cnkzc29k0inz6kdn77l0ymzjgf1hid8jza7nla4ym2s0gidgdyf"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="1.1"; sha256="0w1zsb6qjcgyig8mahmpw0plxzqm2yqvg7gnqf50q1mpvdani2f4"; depends=[MASS]; }; + IsoplotR = derive2 { name="IsoplotR"; version="1.3"; sha256="1c7m48vj4884xzxilgv8ykginaayy8mp35xf6xaw7v0f4x2w3bk9"; depends=[MASS]; }; IsoriX = derive2 { name="IsoriX"; version="0.7.1"; sha256="1x2vdgvnfkrgcrm7pdrdvr7m72y0274dab5cyhz31j8l2gqxw9la"; depends=[latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; JADE = derive2 { name="JADE"; version="2.0-1"; sha256="0s7cdvhjcdxdqv4mgjd07xi3s0ngjvpxsmy0ary735rs5y6198mm"; depends=[clue]; }; @@ -1717,26 +1722,24 @@ in with self; { JOP = derive2 { name="JOP"; version="3.6"; sha256="1kpb1dy2vm4jgzd3h0qgdw53nfp2qi74hgq5l5inxx4aayncclk7"; depends=[dglm Rsolnp]; }; JOUSBoost = derive2 { name="JOUSBoost"; version="2.1.0"; sha256="0f3rr7aw20nvmlpqrq3wzgmr55lqdqhk3wphpqq7msgvaf1zrcl7"; depends=[doParallel foreach Rcpp rpart]; }; JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; }; - JPSurv = derive2 { name="JPSurv"; version="1.0.1"; sha256="11hfji0nyfmw1d7y2cijpp7ivlv5s9k8g771kmgwy14wflkyf7g2"; depends=[]; }; JRF = derive2 { name="JRF"; version="0.1-4"; sha256="1xpvscn9iawwa0vfh3kfwzdni436bf42nvm18b8abh033ljvqpij"; depends=[]; }; - JSM = derive2 { name="JSM"; version="0.1.2"; sha256="18h3jhfg5ch9312aidpbs0fz5rd54alv4kjhvkchddhp3alyhp82"; depends=[nlme Rcpp RcppEigen statmod survival]; }; + JSM = derive2 { name="JSM"; version="0.1.3"; sha256="1p5vlk2fcrb42pi7srkymjacfg05vlaspvhaw94lq1rhvxdw87yl"; depends=[nlme Rcpp RcppEigen statmod survival]; }; JWileymisc = derive2 { name="JWileymisc"; version="0.2.1"; sha256="0cli204f1b5hj3qz62fycww12a6dv7xxxszkxgrxirw6mpdf858c"; depends=[cowplot data_table devtools foreach ggplot2 Hmisc lavaan MASS mgcv mice multcompView plyr]; }; JavaGD = derive2 { name="JavaGD"; version="0.6-1"; sha256="13n6xzbbjgd0bpwv2xgm3dlscg87wh32q6fcq50kk6byp6yv05sc"; depends=[]; }; - Jdmbs = derive2 { name="Jdmbs"; version="1.1"; sha256="06af66128vfcf28fylaz7qqzqrpn6s9hz89pd5jwpr32wxc5vwcg"; depends=[igraph png rmarkdown]; }; + Jdmbs = derive2 { name="Jdmbs"; version="1.3"; sha256="0jjnn1lrrakai34srp9ks8a563amd1rp9vd4ydnpmgfma5qlify0"; depends=[igraph png]; }; Jmisc = derive2 { name="Jmisc"; version="0.3.1"; sha256="1szn29dng54l2xmrm6pg3d5rmwdc1ks23vsnsmplnr5rx7yj002s"; depends=[]; }; - JoSAE = derive2 { name="JoSAE"; version="0.2.3"; sha256="0b1jwplds5b7z15v6bvqj1rbn7zxpgvh2ykhqplxzv4mlaw6i0li"; depends=[nlme]; }; + JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; }; Johnson = derive2 { name="Johnson"; version="1.4"; sha256="12ajcfz5mwxvimv8nq683a2x3590gz0gnyviviyzf5x066a4q0lj"; depends=[]; }; - JointAI = derive2 { name="JointAI"; version="0.1.0"; sha256="0im17n3w6mhgd2lnjja0ca30b2yz06qn7frcsr9qbbhnc4p7pnv4"; depends=[coda MASS mcmcse rjags]; }; + JointAI = derive2 { name="JointAI"; version="0.2.0"; sha256="1y3mvj1m2mi6ss3svfrlk5lbyh3zp1mkyjgl7fv317n3xjg006s2"; depends=[coda MASS mcmcse rjags]; }; JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; - JointRegBC = derive2 { name="JointRegBC"; version="0.1.1"; sha256="0w7ygs3pvlqkkb2x20kv20kda3gz7cn6zgrkg30nhjxp318d76ab"; depends=[MASS nlme survival]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; - JuliaCall = derive2 { name="JuliaCall"; version="0.12.2"; sha256="1408pzvnsxc1mq31b0nf61qc5rby7ymnz3vpkab4xds7kh0fcqh9"; depends=[R6 Rcpp]; }; + JuliaCall = derive2 { name="JuliaCall"; version="0.14.0"; sha256="1zrj1jn55qxxg95h1rfbfgzd7dn3hxm7gkwbin6zkcxi8qdc3690"; depends=[R6 Rcpp]; }; JumpTest = derive2 { name="JumpTest"; version="0.0.1"; sha256="1d5zmjwmajzdg5d1ws40zchx9wiaav01fby1v3irym2mx30jgbqn"; depends=[MASS Rcpp RcppEigen]; }; - JuniperKernel = derive2 { name="JuniperKernel"; version="1.2.3.0"; sha256="17r4ssjjayvnp9fp9jalklp3p8dadyx5hvi9z3bh3sw4b7kx4lyd"; depends=[data_table gdtools jsonlite pbdZMQ Rcpp repr]; }; + JuniperKernel = derive2 { name="JuniperKernel"; version="1.4.0.0"; sha256="0yjfdpilz08cbnn35bxiqbn0d312mfxzdkb643db0zl34x5akxpa"; depends=[data_table gdtools jsonlite pbdZMQ Rcpp repr]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KENDL = derive2 { name="KENDL"; version="1.1"; sha256="05vsh3x0li964a485q3n19c7fahcprvg1bnrvffagkxf8w1iz153"; depends=[]; }; KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; }; - KFAS = derive2 { name="KFAS"; version="1.3.1"; sha256="0hnf9ljy19hng7cvr0qixcf8h9z2spp5c9512gfm9c7zn6802k54"; depends=[]; }; + KFAS = derive2 { name="KFAS"; version="1.3.2"; sha256="11ikpac63as1c4mz6kdrynjyy4wrfr4qrk1m2g4gbcrg10dnc06q"; depends=[]; }; KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; KGode = derive2 { name="KGode"; version="1.0.1"; sha256="05g8zr3jm13cl6wk9m693gxa3fn5cjppm56j7ih4zzswzk9b67h9"; depends=[mvtnorm pracma pspline R6]; }; KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; @@ -1745,12 +1748,13 @@ in with self; { KODAMA = derive2 { name="KODAMA"; version="1.4"; sha256="0qzpgj6ljzd8n8vgmf53pmblsmypl86j7njd3pz0d370bxfchsqj"; depends=[Rcpp RcppArmadillo]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.1"; sha256="0n07wrpmmvxflxpmhkp3gm40xz2w4j0l8dsljhmfiyxcf5y7kq2g"; depends=[pheatmap]; }; KRIG = derive2 { name="KRIG"; version="0.1.0"; sha256="1hpmjzzrh5b042xh14dgxvn5x5ini63vq5jz1i6rjgvsdf734f98"; depends=[Rcpp RcppArmadillo Rdpack]; }; + KRIS = derive2 { name="KRIS"; version="1.1.1"; sha256="0v2xgdwd8lp399il6grjkysq2gj38fmjlxlvg5ciq3g3cp7cdy3m"; depends=[rARPACK]; }; KRLS = derive2 { name="KRLS"; version="1.0-0"; sha256="1zyf3smfzfm3n43i35rlj1w6vcip2hxkvk4f8lp77xbsry0gmwjw"; depends=[]; }; KRMM = derive2 { name="KRMM"; version="1.0"; sha256="0wxzhrrc4lx20nxjny7rcfw3bya7drn88zbrlzx9f531298xwbrk"; depends=[cvTools kernlab MASS robustbase]; }; KSD = derive2 { name="KSD"; version="1.0.0"; sha256="0wqmbr51yv7f87pnhph2nrj9y2d5jql2agizcaq6lax23lj6xfb7"; depends=[pryr]; }; KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; }; KScorrect = derive2 { name="KScorrect"; version="1.2.3"; sha256="1i69glkyi3ydzfgd8d6zrbgjq7gy9laq00jdppbqnl13i1n14sp7"; depends=[MASS mclust]; }; - KSgeneral = derive2 { name="KSgeneral"; version="0.1.0"; sha256="19rrm411c2fvx4bxi9qc6v9spqpf52k08i7gvhici9dx2hhm3134"; depends=[dgof MASS Rcpp]; }; + KSgeneral = derive2 { name="KSgeneral"; version="0.1.1"; sha256="1ldk3fvwbr6hw7x3ydgzixgc41a0fbbic699zjlnpj5x4mjg1qby"; depends=[dgof MASS Rcpp]; }; KTensorGraphs = derive2 { name="KTensorGraphs"; version="0.1"; sha256="1hsndxslqgca0ay4q277zjwnwz8bzwfkzz915dgqvjd2v4afrvzx"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; }; KappaV = derive2 { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[maptools PresenceAbsence rgeos sp]; }; @@ -1762,16 +1766,17 @@ in with self; { KernelKnn = derive2 { name="KernelKnn"; version="1.0.8"; sha256="1xiz90n9wggn5fv42h8c6gd3j6vmkwyq1433wwnmzrz5kw7f6vgb"; depends=[Rcpp RcppArmadillo]; }; Kernelheaping = derive2 { name="Kernelheaping"; version="2.1.8"; sha256="03m5dwgm98x6ncifyyp2yxln4bm87rkrx84bdihywjd0x73pbklv"; depends=[fastmatch ks magrittr MASS mvtnorm plyr sp sparr]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; - Knoema = derive2 { name="Knoema"; version="0.1.13"; sha256="10r7gpr39f32h4znmh8kywcs0l2g9ij75qqcyd3ai1fyif54wyqc"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; - KnowBR = derive2 { name="KnowBR"; version="1.7"; sha256="1h5xpj7cqj6130rwsd6bssvwmzc6ldb5wbjgqw7bc588ll1q5rsg"; depends=[fossil mgcv plotrix sp vegan]; }; + Knoema = derive2 { name="Knoema"; version="0.1.16"; sha256="0v6w8rrw8nd4l1by5w9xd4hbxp55cma89kljha47ykvmnflsrjsc"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; + KnowBR = derive2 { name="KnowBR"; version="1.8"; sha256="1krkaxwx8qqlnlwc9fc663qx5y9c9lcws69fnqjdcfgim54pl3xz"; depends=[fossil mgcv plotrix sp vegan]; }; KoNLP = derive2 { name="KoNLP"; version="0.80.1"; sha256="1chj8kv1l405dm0jcsxjjjxx395z05sfxbcc5vxnpbydx7lxa6zy"; depends=[devtools hash rJava RSQLite Sejong stringr tau]; }; - KoulMde = derive2 { name="KoulMde"; version="3.0.0"; sha256="01mczlrdrfwdp2cj10kdqay3qpg8xf2v7vym62pll9l8n595snrl"; depends=[Rcpp]; }; - Kpart = derive2 { name="Kpart"; version="1.2.1"; sha256="0jx5rqiw0y9hc1czg75iy4jvd993d7dri90s4iiskbg6x6z65mi9"; depends=[leaps]; }; + KoulMde = derive2 { name="KoulMde"; version="3.1.0"; sha256="158lg1jr3lgn85wgdxww6nldy9blxnnjry6hwkp6kcjpg9jljjl8"; depends=[expm Rcpp RcppArmadillo]; }; + Kpart = derive2 { name="Kpart"; version="1.2.2"; sha256="02df0pr8a0gm8558gbw9svxf5sybmg27grymy71ar9hjnhw5xlf2"; depends=[leaps]; }; KraljicMatrix = derive2 { name="KraljicMatrix"; version="0.2.1"; sha256="0yzilmiiyzd2x3v0cnjphf0wdwiblh37kgrvmfrdy49qly48pvi2"; depends=[dplyr ggplot2 magrittr tibble]; }; KrigInv = derive2 { name="KrigInv"; version="1.3.1"; sha256="0fcfv2vl572l8qp1ilhjai6zrw15bf1z41qm7xlfspfbj611ga7k"; depends=[DiceKriging pbivnorm randtoolbox rgenoud]; }; + L0Learn = derive2 { name="L0Learn"; version="1.0.2"; sha256="0igfmw4kpc5m6r1kj944ch48sdyx82c8imid3vrk67q2pcwqqc1a"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; }; L1pack = derive2 { name="L1pack"; version="0.38.19"; sha256="09n1045lsx1ap47mhzcqghmwwhj24kvpjjr3ysprj058jp5g7ri0"; depends=[]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="1.1.0"; sha256="08sf4mm40gv9mr57pxsl1b62s2dqvbvrhy2irzqspyqk5ai2aw0m"; depends=[curl dplyr lazyeval magrittr purrr rappdirs sf stringr]; }; - LAM = derive2 { name="LAM"; version="0.2-9"; sha256="0znkh25aa2vv3h3rfqdaadk58c2p7rwfw8xx5i8fs6dzyvx6c99l"; depends=[CDM coda Rcpp RcppArmadillo sirt TAM]; }; + LAM = derive2 { name="LAM"; version="0.3-48"; sha256="12a38rvb0krfl0yffhyn7nmxcgkga46kfn4h7wzvnr0hpl5a7kjf"; depends=[CDM coda MASS numDeriv Rcpp RcppArmadillo sirt TAM]; }; LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; }; LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; LBSPR = derive2 { name="LBSPR"; version="0.1.2"; sha256="09jvdjagf4icnigbfw18z36ya4llg84fa6j2khd22cl60y81r5i3"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; }; @@ -1792,13 +1797,12 @@ in with self; { LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; }; LEAPFrOG = derive2 { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; }; - LEGIT = derive2 { name="LEGIT"; version="1.2.1"; sha256="1ma4rpchinl4i58ljcdfgwik1rfc79waicpv1f9wdddjfsijwyay"; depends=[boot doSNOW foreach formula_tools gtools Hmisc iterators pROC snow]; }; + LEGIT = derive2 { name="LEGIT"; version="1.2.2"; sha256="1agr8q6wz30fznz4810b27yr2z56n4wrbm96ixck1bpcaahmfcv9"; depends=[boot doSNOW foreach formula_tools Hmisc iterators pROC snow]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0"; sha256="11vy6gg2x98s1y8a5ns9vcd61gw8ax1lhn4lvicdjbd1lg18nm83"; depends=[]; }; LFDREmpiricalBayes = derive2 { name="LFDREmpiricalBayes"; version="1.0"; sha256="1imw3djmbpdyplv9dmdzzirp9imk88j0kcxcyfh8yr9ywgd77x6b"; depends=[matrixStats R6]; }; LGEWIS = derive2 { name="LGEWIS"; version="1.1"; sha256="1i52vp0ghjzmyh4r8h6jpyij7x4skw99xvw017b56m8fg64zy70r"; depends=[CompQuadForm geeM mvtnorm SKAT]; }; LGRF = derive2 { name="LGRF"; version="1.0"; sha256="1kdx6y55aa9n6v43zfz6jk8amvvxbx79sqm1jx4ihgkpgcdglan7"; depends=[CompQuadForm geepack SKAT]; }; LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; }; - LICurvature = derive2 { name="LICurvature"; version="0.1.1"; sha256="09hqar4kvksd816ya6jg349r0v6z2m2109hq6j4k1d2vchab4lni"; depends=[MASS]; }; LIHNPSD = derive2 { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[BB Bolstad2 moments optimx Rmpfr sn]; }; LIM = derive2 { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[diagram limSolve]; }; LINselect = derive2 { name="LINselect"; version="1.1"; sha256="1dx97pnfwlv6w00qp8b2ah8jl1arfh39x1vzry8zrxgxisq407wq"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; @@ -1811,28 +1815,28 @@ in with self; { LN0SCIs = derive2 { name="LN0SCIs"; version="0.1.5"; sha256="09zr6lrvv7lw9qp3vz4n2dv0v3q7wq06wwvwpb2pm0r335bnrf89"; depends=[]; }; LNIRT = derive2 { name="LNIRT"; version="0.3.0"; sha256="1xlfk3a0x8abs6xwsm9s50nvi53s1a7nhnskhvjbi3rdzkvkrwxl"; depends=[MASS]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; - LOGIT = derive2 { name="LOGIT"; version="1.3"; sha256="1nx9ycrys0p08xr1n7bqgn47k5wz1zbp6w5pwsqk5c6f6did2rs1"; depends=[caret e1071 ggplot2 MASS pROC reshape]; }; LOST = derive2 { name="LOST"; version="1.3"; sha256="01ymnczsnfml04hb6hbi041khkz2aki78qr3hriw7n3bzs5i7xim"; depends=[e1071 gdata MASS miscTools pcaMethods rgl shapes]; }; LPCM = derive2 { name="LPCM"; version="0.45-0"; sha256="15gpb59556s28npdsw1r821rld7b11y1m2m97m320n9k0z4vbk3i"; depends=[]; }; - LPGraph = derive2 { name="LPGraph"; version="1.0"; sha256="0hbcllrvjsgkapkf28957y47jrhajrk7j67iw36bxpbb25xfvl7i"; depends=[car SDMTools]; }; + LPGraph = derive2 { name="LPGraph"; version="2.0"; sha256="1d3czxihaz3f09bfb34knqb6prhcx50kh8y4qrhhakic999z6ifw"; depends=[car PMA SDMTools]; }; LPKsample = derive2 { name="LPKsample"; version="1.0"; sha256="0vxps8zd9zg1aw4p2qd8wamcjkbl68yvppnlvshm2ry5dahwz1wk"; depends=[apcluster igraph mclust]; }; LPM = derive2 { name="LPM"; version="2.7"; sha256="1anjgflj1272xrghn3s9a21f2dfggppnzjqh3p8zaid91bzg0g34"; depends=[fracdiff MASS QRM]; }; LPR = derive2 { name="LPR"; version="1.0"; sha256="16kmfm6p7cwnzpd054ik0cy0ipif6zssdfyxyfm0cijz8z4z40x7"; depends=[doParallel foreach glmnet iterators lattice Matrix slam]; }; LPS = derive2 { name="LPS"; version="1.0.10"; sha256="0gf3jmhfki01z8fm5xdx59gxvhgzqd10x2iwa8369iz9dvwbjk8j"; depends=[]; }; LPStimeSeries = derive2 { name="LPStimeSeries"; version="1.0-5"; sha256="0jmcy8076w4bzfnxaq2m3s60c1wdmywkwzfyrc19wdm8idf666wh"; depends=[RColorBrewer]; }; LPTime = derive2 { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; }; - LPWC = derive2 { name="LPWC"; version="0.99.2"; sha256="1cir7w4rrpw7iqc1waf5aijk41hl19mdg1q7ml7mi0js88xy0a0y"; depends=[]; }; - LPmerge = derive2 { name="LPmerge"; version="1.6"; sha256="0xc06s2p7n151lzrp0dcrrxk8zmd816dc7qbnbcail5c1bhvdqhd"; depends=[Matrix Rglpk]; }; + LPWC = derive2 { name="LPWC"; version="0.99.3"; sha256="1kbm3anba39q4fn1yxaljrk93d2asp63dalhynymlcqr9p9grhzn"; depends=[ggplot2 knitr]; }; + LPmerge = derive2 { name="LPmerge"; version="1.7"; sha256="1wf7hfj670pnzzxyqm3vwrbrvxdbyprh42s5vpv4y54a0w4nr83g"; depends=[Matrix Rglpk]; }; + LPower = derive2 { name="LPower"; version="0.1.0"; sha256="0g9y5s4k3l4zw97qh6c9jj6ysl39y4fprvqw1ybykirvgflisi8x"; depends=[MASS nlme]; }; LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; - LS2W = derive2 { name="LS2W"; version="1.3-3"; sha256="0pdsv7ld0j116rh94m5y1i2mwrzc80fqxmc6ykc51i1sj6ws3i5k"; depends=[wavethresh]; }; - LS2Wstat = derive2 { name="LS2Wstat"; version="2.0-3"; sha256="0wkh1a6xbp3qg5favxsj166jcgdza16zki675gswxckana6s4is7"; depends=[geoR LS2W matrixStats RandomFields spdep]; }; + LS2W = derive2 { name="LS2W"; version="1.3.4"; sha256="1h4vvl1gfxkdjmy6syl0gf4fv03xxxw82cxwvy10b40sf20lwmnv"; depends=[MASS wavethresh]; }; + LS2Wstat = derive2 { name="LS2Wstat"; version="2.1"; sha256="0i1b409bhvlm4hpcgm4bhd7pqk4bkcyy48d7bci254ppcr7z1m9q"; depends=[geoR LS2W matrixStats RandomFields spdep]; }; LSAfun = derive2 { name="LSAfun"; version="0.5.2"; sha256="114qhnx4dr7ywh3fzkjd35xygpnn74g5nv66ahj7hf5w0gg13ws9"; depends=[lsa rgl]; }; - LSAmitR = derive2 { name="LSAmitR"; version="1.0-1"; sha256="0p1j4q1b7488wbwl2c9py6ldq2j7ri1dvnmmknx5lwvzv0xsawsd"; depends=[Hmisc lme4]; }; + LSAmitR = derive2 { name="LSAmitR"; version="1.0-2"; sha256="15qyij193scrvc1ghcssr6qdzxc4l4qh199s09bz5hvr62zwfdgb"; depends=[Hmisc lme4]; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; }; LSD = derive2 { name="LSD"; version="4.0-0"; sha256="0fsp3pwrnnic9mzkd6yxa4bnxbvg68712lb20vd42wf6jb39r2h3"; depends=[]; }; LSDinterface = derive2 { name="LSDinterface"; version="0.4.0"; sha256="0nj4m924cj7x2djalrfyrrmycq2ha6s52m34kjgs7fc9f548lhx0"; depends=[abind]; }; - LSDsensitivity = derive2 { name="LSDsensitivity"; version="0.1.4"; sha256="1gfd890vr31ab37xbx7yhwbqk6y659d0dqyir7vrgma48cd0nidv"; depends=[abind car DiceKriging kSamples LSDinterface randtoolbox rgenoud sensitivity tseries]; }; + LSDsensitivity = derive2 { name="LSDsensitivity"; version="0.2.0"; sha256="1aab4djk510q35gr6vj5vx1p7jhqg2ph6fw4sjbsg60bjnr3nyyi"; depends=[abind car DiceKriging kSamples LSDinterface randtoolbox rgenoud sensitivity tseries]; }; LSMonteCarlo = derive2 { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; }; LSPFP = derive2 { name="LSPFP"; version="1.0.0"; sha256="074qd7zxa54cawipmba1khb6hyrkg553vc25gf2z0ydyv14shm0w"; depends=[bit64 data_table R_utils RCurl seqinr tcltk2]; }; LSRS = derive2 { name="LSRS"; version="0.2.0"; sha256="0p70v5vbxi1rf055mqgsp8v0lxnaj53bmbghli1764yn3x1k3iw6"; depends=[]; }; @@ -1840,7 +1844,6 @@ in with self; { LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTR = derive2 { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.0"; sha256="07mvbk3hwl240r46ahha0a4fzq96awk963zl8dhky51b6abp83gz"; depends=[icenReg inum partykit rpart survival]; }; - LVMMCOR = derive2 { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[MASS nlme]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.3"; sha256="15x29afaq13iwlj66h97k3kczg9rfgp6i9d76rji58hfgh8i8by6"; depends=[]; }; LaF = derive2 { name="LaF"; version="0.8.0"; sha256="1nasj0502i0dbzqgm1pdvmc0wj1hk2q5fzanpcsh7zslsikiqxyq"; depends=[Rcpp]; }; @@ -1851,24 +1854,23 @@ in with self; { LambertW = derive2 { name="LambertW"; version="0.6.4"; sha256="09ygalklv0d767nwziqwaxa7h517rzqgaznmb04q43122x2gwb3k"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; Langevin = derive2 { name="Langevin"; version="1.2"; sha256="0iy1nh4wzipw8spmfr0kscdnpaz3cq4idkbl5khiia2jid0kimvl"; depends=[Rcpp RcppArmadillo]; }; LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; - LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.1.0"; sha256="1fx85kfdvap914b2fsylkd6wiwcfxpmndkrynivwjczwx1hr5na1"; depends=[]; }; + LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.1.1"; sha256="0xxx8967v015fy56m0hqfnr1mwgisj8ximdl05bs28ymzvdx37kp"; depends=[]; }; LassoBacktracking = derive2 { name="LassoBacktracking"; version="0.1.2"; sha256="1z1cnj6r6cq3b8xa9qck3ijfmzsr70r2p9m1ndakijb36pgwrzcs"; depends=[Matrix Rcpp]; }; LassoSIR = derive2 { name="LassoSIR"; version="0.1.1"; sha256="0ap8335ms12nsc7jvd48244zya54w05wj91qkhb0i63730r508c3"; depends=[glmnet]; }; Laterality = derive2 { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjjzzh99s6rh4jsq0pbcgc902i0z2lmmivgs5qmd6"; depends=[ade4]; }; - LatticeKrig = derive2 { name="LatticeKrig"; version="6.4"; sha256="02il7cks03kmbra3sf90kdfp0dzg4kfmy512hd542nzwwa8pivsm"; depends=[fields spam]; }; + LatticeKrig = derive2 { name="LatticeKrig"; version="7.0"; sha256="04waq7dpp86rpa8qgrjbpl72k6vhkd300vxfc1xxy5z7k36pinqh"; depends=[fields spam]; }; Lavash = derive2 { name="Lavash"; version="1.0"; sha256="0cjl8crk0rdkyzp069fk4k0sapcjmqm3q40z5mgl0i1n59kn4s07"; depends=[glmnet MASS pracma]; }; - LeArEst = derive2 { name="LeArEst"; version="0.1.5"; sha256="13rxch3f16yvcil255abdp2vc7v2ipy3xj38s7hmjikqfdmxpkw4"; depends=[conicfit jpeg opencpu]; }; - LeLogicielR = derive2 { name="LeLogicielR"; version="1.2"; sha256="0h52pzrksi1mn55mnxbfi61hl7x61cnkhp450slfrk68f6kp30x6"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; - LeafAngle = derive2 { name="LeafAngle"; version="1.2-1"; sha256="0g3i5300f3rvjz7g7z8s5n8xdcsp41gf1vnr4g36m1likddfpxlx"; depends=[]; }; + LeArEst = derive2 { name="LeArEst"; version="0.2.0"; sha256="1492r6l0azs4ga6ia02bggk1jsx6q6rg05ins9ng6f41h04v6q3m"; depends=[conicfit doParallel foreach jpeg opencpu]; }; + LeLogicielR = derive2 { name="LeLogicielR"; version="1.2.1"; sha256="0jd280ial4wfj5j6sbxgl2cbxabycsgmh2zsad7v7hcwbhhdd09i"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; LeafArea = derive2 { name="LeafArea"; version="0.1.7"; sha256="0pn6hh9ipr609pi49ls8wxnx7v8q1wyp84i22zzwxyzwaap5nmj2"; depends=[]; }; LearnBayes = derive2 { name="LearnBayes"; version="2.15.1"; sha256="0ch54v2zz2yyyk0lvn5rfikdmyz1qh9j1wk3585wl8v58mc0h4cv"; depends=[]; }; LearnGeom = derive2 { name="LearnGeom"; version="1.3"; sha256="0fqf5k3gsdxwyfcbkypqiq0ir8ay8r9bdy8iljhj308ammq0mxzk"; depends=[RgoogleMaps]; }; - LendingClub = derive2 { name="LendingClub"; version="1.0.4"; sha256="03pgarbraj6in7pk7zaci98aq6dh52vsqb64my5p0bczgl2cpzmm"; depends=[dplyr httr jsonlite plyr]; }; + LendingClub = derive2 { name="LendingClub"; version="2.0.0"; sha256="13qh5p4ksvgd1pmc4mdp8p44ra34fvp3s5p5vhlkpclkv5d4mxq2"; depends=[dplyr httr jsonlite plyr readr]; }; LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.1.2"; sha256="0ziy86l6q01l471lmpldhs48xqlyw1va75np5hkzaq5wapr9pfk4"; depends=[data_table quanteda scales stringdist stringi]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.3"; sha256="1qdgs6p11j0ign27bbnn32g65sw42982ijrig5cwqsdvxpdabjl8"; depends=[ggplot2]; }; LiblineaR = derive2 { name="LiblineaR"; version="2.10-8"; sha256="17ykazac7iv02bxl8xg948vhbdr32icdm1v4bk31zmslp4xsk08g"; depends=[]; }; LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; }; - Libra = derive2 { name="Libra"; version="1.5"; sha256="1kd3d06qjswqhwdsjkijixd4yijzks8xcdrkpyh99dwg045fg9h7"; depends=[nnls]; }; + Libra = derive2 { name="Libra"; version="1.6"; sha256="0fqmc6fhcmpg9ragk4r4k000wrix9dsd52baz58bp1c80wpvvcf3"; depends=[nnls]; }; LifeHist = derive2 { name="LifeHist"; version="1.0-1"; sha256="0q6l6rva5kxl8yzqa7ni4sdj6p4c61sdsjx8zhckzxb7xlwg2hh0"; depends=[BB Hmisc optimx]; }; LifeTables = derive2 { name="LifeTables"; version="1.0"; sha256="1dyivvi5cjsnbhncj3arkrndadg7v81nzdf6p6mpgqwqvwn5li8x"; depends=[mclust]; }; LightningR = derive2 { name="LightningR"; version="1.0.2"; sha256="1va673aw2hgir8ybbjad6dhbs8izs1z4jcikwa7qp3mkv0zqd0vq"; depends=[httr R6 RCurl RJSONIO]; }; @@ -1883,14 +1885,12 @@ in with self; { LncFinder = derive2 { name="LncFinder"; version="1.0.0"; sha256="1ygbmazjm2jk0wrd13khpx8rkwd51cb50qxs2zdad0w09705mpsx"; depends=[caret e1071 seqinr]; }; LncMod = derive2 { name="LncMod"; version="1.1"; sha256="08001y7s93i3k3478jqfh9zsgpq6ym1xmdmldi7s76zbfr1nknvy"; depends=[pheatmap survival]; }; LncPath = derive2 { name="LncPath"; version="1.0"; sha256="1cihwlj5sv000qg2wa931yx4ca6nixgihjna4g3fh7nr5aiv6cfn"; depends=[igraph samr]; }; - LncPriCNet = derive2 { name="LncPriCNet"; version="1.0"; sha256="19cw3x97xv42kc4jag7axnmpd0nfnwg7vnwcn2bgcmm5gapmfn1h"; depends=[]; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; - LocalControl = derive2 { name="LocalControl"; version="1.1.0"; sha256="0hfm8lllsg5h95ib0h89hbhwcnk2959y9i3kllwmxhmqbirvlpx9"; depends=[cluster gss lattice Rcpp]; }; + LocalControl = derive2 { name="LocalControl"; version="1.1.1"; sha256="1fshqm6ag0scjawf2vn8zz9vrx4fv0shk2qyk60adb1ms85y8rrq"; depends=[cluster gss lattice Rcpp]; }; Lock5Data = derive2 { name="Lock5Data"; version="2.8"; sha256="17awskq78h23z2dy96d7hziljhnkx5phpd48q7cppxidyvzfywim"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-1"; sha256="1hy7fnahncpsgqxfy352lxk298i69w7drlspsgdvpzdbghca3y3i"; depends=[MASS mclust mvtnorm rgl tkrplot]; }; - LogicForest = derive2 { name="LogicForest"; version="2.1.0"; sha256="0zdyyi6wka0568414f1kw91rx04y76n1k11wxd4r8svb5wybjhp5"; depends=[CircStats gtools LogicReg plotrix]; }; - LogicReg = derive2 { name="LogicReg"; version="1.5.9"; sha256="0rxzhbf51psdj7wb2dcah16y8f5q7y8p0yybz54rm00d1qagl6nq"; depends=[survival]; }; + LogicReg = derive2 { name="LogicReg"; version="1.5.10"; sha256="15p9wklws7dwrc2ai8gj00mgjl41qwlnd2r85mvc4k89v3aafql7"; depends=[survival]; }; LogisticDx = derive2 { name="LogisticDx"; version="0.2"; sha256="0ciygvynnyajpn1glxy6mwj9vbl7iv8a8dfsi6wxjxp2rac68rig"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; }; LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; }; LogrankA = derive2 { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; }; @@ -1900,11 +1900,11 @@ in with self; { LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; LumReader = derive2 { name="LumReader"; version="0.1.0"; sha256="1h2r3c9xkwlnaicn65085bdx7y86ha2fpd5mxirqax5lm6d8lirc"; depends=[gridExtra lattice plotly shiny]; }; - Luminescence = derive2 { name="Luminescence"; version="0.8.3"; sha256="0mrmxz5b1px44h50ai25lza67k2ji78sdi1b6nd373kpmix5kxa1"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; }; + Luminescence = derive2 { name="Luminescence"; version="0.8.5"; sha256="01fd7hwridcrc0vi8cmj2pvpmbqdgqnh1qjnj7mq6cxcyijzd6sg"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; }; + M2SMF = derive2 { name="M2SMF"; version="1.0"; sha256="0hf5ckpridi70yv15h0771q1grhqr9c592r87hgba7yh55dqqcq1"; depends=[dplyr MASS]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; MADPop = derive2 { name="MADPop"; version="1.1"; sha256="1w2jbiki6d14y32p8a50b8g53m1iva2kgik14yg27z5hx1rwwq97"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; - MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.3"; sha256="0xv4ldyjp6pa2jk81al5ldvm72ywzb9fmwim8l97xcbydm5wxjcx"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; - MAINT_Data = derive2 { name="MAINT.Data"; version="1.2.1"; sha256="0fmlmb88005diqwbxlgkzzb7bvxpdkiqiadp649id3mgcz100kcd"; depends=[MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; + MAINT_Data = derive2 { name="MAINT.Data"; version="1.2.2"; sha256="12ha0lznk14ijjamp6y30srkvn8y1ppn8k4dvb4b8gaip5zzj0pp"; depends=[MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; MALDIquant = derive2 { name="MALDIquant"; version="1.17"; sha256="047s6007ydc38x8wm027mlb4mngz15n0d4238fr8h43wyll5zy0z"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.11.1"; sha256="1aj6gakhbpis576b264s43w55dhmd5rszj54z910plybxq8hzmir"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.1"; sha256="1y2nr65cvqkvzzjsr3lmpk58lqd5rqvmzjdakhwhw4s6ymggd9hf"; depends=[lattice MALDIquant robustbase signal wmtsa]; }; @@ -1916,13 +1916,13 @@ in with self; { MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; MAR1 = derive2 { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; }; MARSS = derive2 { name="MARSS"; version="3.10.8"; sha256="1cmkish5rbv7lpm8fnv6d33plkfvxis4r4p48bx10fll1ba11m7h"; depends=[KFAS mvtnorm nlme]; }; - MARX = derive2 { name="MARX"; version="0.1"; sha256="1yanv7q5l8ybw3mh0rvhxyqi2sp8w4b9vnas7lpqflc06j4nnv4p"; depends=[fBasics matlab stabledist tseries]; }; - MASS = derive2 { name="MASS"; version="7.3-49"; sha256="1yjbnj1p4z0vw84wga8q5fyqiw4n6r7pc6rdwam7vsbiamyzfcqs"; depends=[]; }; + MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; }; + MASS = derive2 { name="MASS"; version="7.3-50"; sha256="16hasv9k4n773jsyzvh8s3gbga49hwdj8n5hxij6zqisy4i0kxq6"; depends=[]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="1.3"; sha256="0dsqinl6998jv63m6scljszpi0qb050gj5d4wnp0pcxfs9awi2gj"; depends=[]; }; MAT = derive2 { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.3"; sha256="006mnc4wqh9vdigfzrzx4csgczi0idvlwb6r23w5mmsfbn0ysdm5"; depends=[]; }; MATTOOLS = derive2 { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; }; - MAVE = derive2 { name="MAVE"; version="1.2.9"; sha256="0h54iaw0nlyddgl266sk2gkrq8ff1xn510bfw12csqk7xnydm18f"; depends=[mda Rcpp RcppArmadillo]; }; + MAVE = derive2 { name="MAVE"; version="1.3.8"; sha256="0zr8i21z6c4jwgqdyx7kya8k9016b7fffk4fjjxgas6yg6k2x1la"; depends=[mda Rcpp RcppArmadillo]; }; MAVIS = derive2 { name="MAVIS"; version="1.1.3"; sha256="02hi3n2rligmgg9afqwkpdny2kl68simkaqdd6k1swzlrih0fs4s"; depends=[compute_es ggplot2 irr MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS weightr]; }; MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; }; MAc = derive2 { name="MAc"; version="1.1"; sha256="1lshi5rb8l2mpd302wskhlk5vz1wjidvbss9y69l63zjqdwjs7ch"; depends=[]; }; @@ -1947,37 +1947,36 @@ in with self; { MCMC_OTU = derive2 { name="MCMC.OTU"; version="1.0.10"; sha256="15k3y4bm4cxjb6r30afpw9gksflsxigzb17zwm1ipygq0d0h0zkg"; depends=[coda ggplot2 MCMCglmm]; }; MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.3"; sha256="0b9n793spljmsb58jp41vnl9c753xqaw1g4wbi4ax348cvi09jk8"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; - MCMCglmm = derive2 { name="MCMCglmm"; version="2.25"; sha256="0crici0g6x2471kk9092f72gc6ghbwwqid3w8jsnsvy6ymmk2wih"; depends=[ape coda corpcor cubature Matrix tensorA]; }; - MCMCpack = derive2 { name="MCMCpack"; version="1.4-2"; sha256="1nizmfxyyrp0sbmyprgm97xmi3amxwix1gj7p9v0sjjklv1djap4"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCglmm = derive2 { name="MCMCglmm"; version="2.26"; sha256="0dx3464mihnm8pf2vwr409ca5m7mvm2054x9jigazg66zsd3fxyj"; depends=[ape coda corpcor cubature Matrix tensorA]; }; + MCMCpack = derive2 { name="MCMCpack"; version="1.4-3"; sha256="0rmz1rr1y7ycxj293hhy72vajbyblnrjgqvc2qgb63xfs5svi8qq"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.3.8"; sha256="1qyhxljfcnyj7450vik4j81qilvphwc1b2xv48fnx1pnapfl45wz"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; - MCMCvis = derive2 { name="MCMCvis"; version="0.10.0"; sha256="1yw4xrbkl2mdylvibnqy14v211a1h5knqgpp0syplvjaysjk9irm"; depends=[coda overlapping rstan]; }; + MCMCvis = derive2 { name="MCMCvis"; version="0.11.0"; sha256="099sa541xrskn1jipx16hrgasriv4jy7jgjq9vyjwcagzh2hljz3"; depends=[coda overlapping rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-21"; sha256="0q1m0xg8825q9zjwxcz2h2n0dyr21q5bk29qbqpdhirlwm6f1a51"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; MCPMod = derive2 { name="MCPMod"; version="1.0-10"; sha256="0ns74qhm9bzi70m9bn61zs4mmqmmxxi77f49pdrcnr8wrrnn1kdn"; depends=[lattice mvtnorm]; }; MCPerm = derive2 { name="MCPerm"; version="1.1.4"; sha256="0g65vzn43k6qrsglxd2kz245f662gl3c2gdz6qvvxa96v6q9lhh1"; depends=[metafor]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; - MChtest = derive2 { name="MChtest"; version="1.0-2"; sha256="01lflilrp42m236cznn6qgzvv5v9fzpx6wcfxp3q545bw2xmbdvj"; depends=[]; }; MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; + MDFS = derive2 { name="MDFS"; version="1.0.1"; sha256="17b9lphdgp90vcldlz4p8g1a87pf1d1vg1b8vz8xhn95cb0vr4ci"; depends=[]; }; MDM = derive2 { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; }; MDMR = derive2 { name="MDMR"; version="0.5.1"; sha256="1pv57xl7pjsqxz1j8mnfmjaa36mlr749yb4c44ppdrx6khvw662x"; depends=[car CompQuadForm lme4]; }; MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.3"; sha256="0aaw787fvcyhw6mbl42icgqfdzvfr618vg179984xqifafr40dyc"; depends=[linprog Matrix]; }; - MDR = derive2 { name="MDR"; version="1.2"; sha256="0g2fvvcwagml6635va87nc0ijzy0pypx5aqzz7mf5w13j0wpm24y"; depends=[lattice]; }; MDSMap = derive2 { name="MDSMap"; version="1.0"; sha256="15557ca83bvsqcmsa48vispagg9a05658i22cqk706shjsp782n5"; depends=[princurve reshape rgl smacof]; }; MDimNormn = derive2 { name="MDimNormn"; version="0.8.0"; sha256="080m0irx5v8l45fg9ig5yzcj92s3ah8a9aha288byszli1cchgpn"; depends=[]; }; MDplot = derive2 { name="MDplot"; version="1.0.1"; sha256="1xijh18hrkb807nfkdr7g642aspn5psc8nw29q387jl5hly2w8s9"; depends=[gplots gtools MASS RColorBrewer]; }; MED = derive2 { name="MED"; version="0.1.0"; sha256="0fy0qmxirkdz5kigy2r7l5czjzws0fhjxy13kv1kqh628ldrp109"; depends=[]; }; MEET = derive2 { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[Hmisc KernSmooth Matrix pcaMethods ROCR seqinr seqLogo]; }; - MEGENA = derive2 { name="MEGENA"; version="1.3.6"; sha256="0ylv7kbk0x3rm08aiwci4p3kma08qj4szlw2h1d6wcqmipy93v8s"; depends=[BH cluster doParallel foreach fpc ggplot2 ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; }; MEPDF = derive2 { name="MEPDF"; version="1.0"; sha256="171pzhz4z0373663mfnfi5cqd9gnj0aamwr56ag16dxm8xfyppcj"; depends=[MASS plyr pracma]; }; - MESS = derive2 { name="MESS"; version="0.5.0"; sha256="1khm9x7kk68xcnjm9iij1s5zvj8n6dp1iwyp2y8fcv12qnvrjpbc"; depends=[geeM geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; - MEclustnet = derive2 { name="MEclustnet"; version="1.1"; sha256="1ayyrxdb9qd7fxnr8y2lbjcd2c8m38mjm1ks6z22vyddbhkf78in"; depends=[e1071 ellipse latentnet MASS mclust mvtnorm nnet vegan]; }; + MESS = derive2 { name="MESS"; version="0.5.2"; sha256="159vnyyab31s871j5hcqwn1g1zp18ym08jz6jcgiamwn0aprbzny"; depends=[geeM geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; + MEclustnet = derive2 { name="MEclustnet"; version="1.2.1"; sha256="1pznisvvgshqbixyj8jya35yhmmpxxa1ivh48c9iafgapwc4yn4s"; depends=[e1071 ellipse latentnet MASS mclust mvtnorm nnet vegan]; }; MExPosition = derive2 { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; }; MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; }; MFAg = derive2 { name="MFAg"; version="1.4"; sha256="092zbl2pxbsvfyf3qssbid14194p0ax2zrw0gzpyqwzdpx0brrlb"; depends=[]; }; MFDFA = derive2 { name="MFDFA"; version="1.0"; sha256="1gy1v49525i2bhr14nvpz8rqcz3lchfnvm0g53qlln55jdndgsx4"; depends=[]; }; MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; MFKnockoffs = derive2 { name="MFKnockoffs"; version="0.9.1"; sha256="1bcdqfzmllp3dri1phy365wgc9c37wlag65pzljn4p3mf43w10nq"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; + MFPCA = derive2 { name="MFPCA"; version="1.2-3"; sha256="0zhmhk1cihk5h4c0qpcna5m687169qxlanbjc92scwab3q8hs2i9"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; MFT = derive2 { name="MFT"; version="1.3"; sha256="029apjg1fqrqfg98jczbxfy267m3f68qxvxqjzbsw1xisq4j7wc0"; depends=[]; }; MGL = derive2 { name="MGL"; version="1.1"; sha256="03q453swnangxyc4nvjhzw2zpcy5vp1wpilap5rwymnf0c0xi4j7"; depends=[]; }; MGLM = derive2 { name="MGLM"; version="0.1.0"; sha256="06gaz82nn7fbfv7bm9xx6dsk95xq3gircvh6knzm963r1bw8f1pk"; depends=[]; }; @@ -2003,30 +2002,34 @@ in with self; { MKmisc = derive2 { name="MKmisc"; version="1.0"; sha256="1ykzj9flq1nx8k7aybd2sh5rd8a2hzk4gwz0iqqsl18k1khzbdla"; depends=[ggplot2 RColorBrewer robustbase]; }; ML_MSBD = derive2 { name="ML.MSBD"; version="1.0.0"; sha256="1myr4pnznkypb7jjpyr5iv4yh29q9kv6g8gmfh9x3wy96xy15wmz"; depends=[ape]; }; MLCIRTwithin = derive2 { name="MLCIRTwithin"; version="2.1"; sha256="07fhbhfnlmllxxdpdqiaz6d72y4pj3vrz6lw5rnlb2m7vknx51ik"; depends=[limSolve MASS MultiLCIRT]; }; - MLCM = derive2 { name="MLCM"; version="0.4.1"; sha256="1g6lmw75qdiq0fshxr3sqwm1a3y4928chxkggnfwwxp8hqw4r6px"; depends=[]; }; MLDS = derive2 { name="MLDS"; version="0.4.5"; sha256="1a5y031kd6zx0zqlk6dvxzsv3isbvg9jap4gqad2jwryh0a9x3c1"; depends=[MASS]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; MLID = derive2 { name="MLID"; version="1.0.1"; sha256="0ygahmcfbydzic5q3h1ppv5b2ks4lh8mcyfqq27ssmn4g1n6hdvp"; depends=[lme4 nlme]; }; - MLML2R = derive2 { name="MLML2R"; version="0.2.0"; sha256="1r8a2sbv7c0xhdacg3gm3x5iml713xbc54c26q5rqx7mdnhsjiqk"; depends=[]; }; + MLML2R = derive2 { name="MLML2R"; version="0.2.1"; sha256="055gps9zv8cv08lkf14p22d7r3kidwkwkhfv45xlg6i4fzcgllxb"; depends=[]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; + MLZ = derive2 { name="MLZ"; version="0.1.1"; sha256="1x2mmd7rb6rk2qb84i7k71w8l14m5dvkwg1xpjqgy9lzqnwhxi45"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; - MM = derive2 { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[emulator magic Oarray partitions]; }; + MM = derive2 { name="MM"; version="1.6-5"; sha256="0vi6wp6p48jjfmnspdsnmw0yqz39sjk6nrkxdw7kan5h17h4rwd7"; depends=[abind emulator magic Oarray partitions]; }; MM2S = derive2 { name="MM2S"; version="1.0.5"; sha256="0h10cbsdnndllwq4cb4aamjy104ckvn01skh7rixa1iqdndac9fx"; depends=[GSVA kknn lattice pheatmap]; }; MM2Sdata = derive2 { name="MM2Sdata"; version="1.0.1"; sha256="1prx0gm9shizj45382qhja417y18jp6spk2hmgrzb7sbniyqs5pd"; depends=[Biobase]; }; + MM4LMM = derive2 { name="MM4LMM"; version="1.0.5"; sha256="1kj0kq98fqsfaj2gahn16jnfj86jq1v6jnmcs5ml944yvhmwx5n3"; depends=[Matrix Rcpp RcppEigen]; }; + MMAC = derive2 { name="MMAC"; version="0.1.2"; sha256="1xwz48iizf0lvmhc7krsraabc49ky85qvgr23w4ip6jzfv4sn1jr"; depends=[]; }; MMDai = derive2 { name="MMDai"; version="1.4.0"; sha256="0bb7hg8fkmzg87xr1b2hxhy75xi461ks6w12z85k4c77kswfpx3b"; depends=[DirichletReg]; }; MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; - MMS = derive2 { name="MMS"; version="3.00"; sha256="06909912v2hr52s8k0a0830lbmdh05dcd7k47vydhbwq3rzf3ahg"; depends=[glmnet Matrix mht]; }; + MMPPsampler = derive2 { name="MMPPsampler"; version="1.0"; sha256="1lk5hh4ihclldrbx2pbfzxvspjaywh7mg6nhs2mjr5dcdj2h0hky"; depends=[cowplot ggplot2 gtools MASS Rcpp RcppArmadillo]; }; + MMS = derive2 { name="MMS"; version="3.0.11"; sha256="0gc4iz371bi65sp49gvjh99f8jvii8l0k12kn1vbpzk4a3cw7iad"; depends=[glmnet Matrix mht]; }; MMWRweek = derive2 { name="MMWRweek"; version="0.1.1"; sha256="16dwmpj13rzxmd2x7xaakw2zq2aly7ajjbfnc39qvdzk6n2x37wn"; depends=[]; }; MNM = derive2 { name="MNM"; version="1.0-3"; sha256="16b2yrm2kn943vzrr38qhk6qq20a842xv7iiln4is02csijxw2b3"; depends=[ellipse ICS ICSNP SpatialNP]; }; MNP = derive2 { name="MNP"; version="3.1-0"; sha256="06qs2vsmjs6rcpqlwfc1n5y5hzxf7pngbdmiza1wijm9hh54ikh0"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; - MOCCA = derive2 { name="MOCCA"; version="1.2"; sha256="04smpzn9x64w1vpw4szqa7dwnaak1ls6gpg7fgajs68mv5zivffa"; depends=[cclust clv]; }; + MOCCA = derive2 { name="MOCCA"; version="1.3"; sha256="1ffpnqcrkrr7vh0f1fyyai0c2wq3v8sk2qhnhds49z7p6xrsmh21"; depends=[cclust class cluster clv]; }; MODIS = derive2 { name="MODIS"; version="1.1.2"; sha256="1iww1rnxv2xw63b5bz7xrxb3q8dmgqzbw704gshislkhjwn37q87"; depends=[bitops devtools mapdata mapedit maps maptools ptw raster RCurl rgdal rgeos sf sp XML]; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; }; - MODIStsp = derive2 { name="MODIStsp"; version="1.3.3.1"; sha256="0685mrddw47428p61dw30yqdp5m0z2xh3rjfdrrdicfyx7kaii5m"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 hash httr pacman plyr raster RCurl rgdal rgeos RJSONIO sp stringr XML xts]; }; + MODISTools = derive2 { name="MODISTools"; version="1.0.0"; sha256="0b3hdj26f1s07c9k67az3xl82wixzniqaidxz8269grx7vndjmsz"; depends=[httr jsonlite tidyr]; }; + MODIStsp = derive2 { name="MODIStsp"; version="1.3.5"; sha256="0mk39dvr0msx8xas6zxpzq95bg2whk8r2dc1zggh61rfi9r9d9mn"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 httr jsonlite pacman raster rgdal rgeos sp stringr xml2 xts]; }; MOEADr = derive2 { name="MOEADr"; version="1.1.0"; sha256="0q0bm13v85raq5hdfpzg4v5kj12zjh31fr1x0zv9g5blxy10dqgy"; depends=[assertthat FNN]; }; MOJOV = derive2 { name="MOJOV"; version="1.0.1"; sha256="11mcqxw83z4xx29s34v4rsbb3zvyhlb2lmvf97b77n455gsy5hab"; depends=[aod lattice saws survey]; }; - MOLHD = derive2 { name="MOLHD"; version="0.1"; sha256="1si1sfrznq477pdzwqz5p3x2vsx3bl9bhrmxaqsimsja58blxygn"; depends=[fields iterpc]; }; + MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; MOQA = derive2 { name="MOQA"; version="2.0.0"; sha256="17w4iwf38k0r2fiwqr420hkbbz1a3r89sqwnd2yn300zmaz64hpr"; depends=[gplots psych readr]; }; MOST = derive2 { name="MOST"; version="0.1.0"; sha256="0nmjx5hsn67hdglcqyanq3az76rs15knv8qy28f8paah5s9w24xf"; depends=[]; }; MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; }; @@ -2035,10 +2038,11 @@ in with self; { MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; }; MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; }; MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; }; - MPSEM = derive2 { name="MPSEM"; version="0.3-3"; sha256="0ir1zlg0vz0nfdair3apa737dw4078lbxyk932755d3rj0cm20c3"; depends=[ape MASS]; }; - MPTinR = derive2 { name="MPTinR"; version="1.10.3"; sha256="0281w5dhg8wmi1rz80xribq437shp4m890c504kggsacr28mbhkw"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; - MPV = derive2 { name="MPV"; version="1.38"; sha256="1w3b0lszqmsz0yqvaz56x08xmy1m5ngl9m6p2pg9pjv13k8dv190"; depends=[]; }; - MPsychoR = derive2 { name="MPsychoR"; version="0.10-6"; sha256="0lxfsxcry5r619cw751m5wn8wgf08j41cgan67xswn42ir7prdpx"; depends=[]; }; + MPSEM = derive2 { name="MPSEM"; version="0.3-4"; sha256="0pj3gv2waxg5v1xv0qcwscq2c0g5w4w2b9ip3b761gs75mdy07g0"; depends=[ape MASS]; }; + MPTinR = derive2 { name="MPTinR"; version="1.11.0"; sha256="1pflypcysc43yp4rh1lxnf7f0qklc6rl4y1mvj6ydwv5nlz52mbh"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; + MPV = derive2 { name="MPV"; version="1.53"; sha256="14qnvcqqscd9hwn2mxf5dclv3ncj7w6vc3blxaml3rflriha6rls"; depends=[]; }; + MPkn = derive2 { name="MPkn"; version="0.1.0"; sha256="0nvd6sv1wypcmphm0wcymbibcxrqzx3c9s9b191p1pmxyz607vxv"; depends=[]; }; + MPsychoR = derive2 { name="MPsychoR"; version="0.10-7"; sha256="10nphm5dzxha4xb7a21b0nxbqy55fg8k748qax7nq3rj4nfjaml7"; depends=[]; }; MRCE = derive2 { name="MRCE"; version="2.1"; sha256="12q7mqn2qkgv992df71k1xmli61khhbfm7lw0n7z2l7qqldpiw1n"; depends=[QUIC]; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; MRFA = derive2 { name="MRFA"; version="0.2"; sha256="1ld9bchldx4y8g0zp2nr6r439f9vqy5xcr9bkv4g4vphm2c5zq72"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; @@ -2050,10 +2054,9 @@ in with self; { MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.1.0"; sha256="1f6ivr6cx4irqkry219x4nk6k5zhp3b19axy2xbfc3dx5zixhpjl"; depends=[]; }; MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MRwarping = derive2 { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; }; - MSBVAR = derive2 { name="MSBVAR"; version="0.9-3"; sha256="0ybkkl3hfff2jgz4a0z105bb0v6jl4dkkqmdg382and8w0mc496c"; depends=[bit coda KernSmooth lattice mvtnorm xtable]; }; - MSCMT = derive2 { name="MSCMT"; version="1.3.2"; sha256="00s4wwggc70w6cg94ff853jnw5hcln6i0719n4xr92cpxaa7irnw"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; + MSCMT = derive2 { name="MSCMT"; version="1.3.3"; sha256="1962lc6p5cy8pkbshzbl3jnd2pqnk9afs4lmp4qb7fqkmb4xpka3"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; MSG = derive2 { name="MSG"; version="0.3"; sha256="181kzkbw69bs3vir6dzgq7jzp8xcpg1p4isfb660vgnd1flb03ix"; depends=[RColorBrewer]; }; - MSGARCH = derive2 { name="MSGARCH"; version="2.1"; sha256="0z4fp37x65ggbn8kx0xbdwq1x18z93azr36smpfqxaykiiwwfa22"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; + MSGARCH = derive2 { name="MSGARCH"; version="2.3"; sha256="0dax3cx0dzmg086vhymnm5x5s7ljdnxx1k52xnnvrm6pprhdgaqn"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSIseq = derive2 { name="MSIseq"; version="1.0.0"; sha256="1v2why1k6pjsc04044nr74571p7541nciq7xkzmya3jq6dw878j3"; depends=[IRanges R_utils rJava RWeka]; }; MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; @@ -2062,8 +2065,8 @@ in with self; { MScombine = derive2 { name="MScombine"; version="1.1"; sha256="0kgz1l4jlhcada3fp02dscf4zx6a22cjxj251838lfz65f512hrn"; depends=[plyr]; }; MSeasy = derive2 { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; }; MSeasyTkGUI = derive2 { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; - MSwM = derive2 { name="MSwM"; version="1.2"; sha256="01l23ia20y3nchykha4vz6sa757zmbvgx2315cacxfcqk9rgs08c"; depends=[nlme]; }; - MTA = derive2 { name="MTA"; version="0.1.1"; sha256="07bkisjvdxzf79ngwc8c5ikmnfas82m894hdc87q2yh0lzf12987"; depends=[igraph rgeos sp]; }; + MSwM = derive2 { name="MSwM"; version="1.3"; sha256="1ny7rzpq6x6yy0iz3ad51vwdh7i4sy60pvgdxda3jcz5wal3hgqm"; depends=[nlme]; }; + MTA = derive2 { name="MTA"; version="0.1.2"; sha256="1149xjq6ybjv6llzlq67j5xc6dspb4mvd72n62nlbq3zz80x7f84"; depends=[igraph rgeos sp]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; MTE = derive2 { name="MTE"; version="1.0.0"; sha256="009mrl9dgxafl4hrgfzvsfvgx3dljb0rbbs74j2cxc5ray87kp55"; depends=[parcor quantreg]; }; MTS = derive2 { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[fGarch mvtnorm Rcpp]; }; @@ -2075,35 +2078,36 @@ in with self; { MVA = derive2 { name="MVA"; version="1.0-6"; sha256="09j9frr6jshs6mapqk28bd5jkxnr1ghmmbv6f4zz0lrg81zjizl3"; depends=[HSAUR2]; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; - MVN = derive2 { name="MVN"; version="5.1"; sha256="1w0q42yqh6c0yl2mkcpn28da59i5svrqg18z2dndnxhvyl46ij3d"; depends=[boot energy kableExtra magrittr MASS moments mvoutlier nortest plyr psych robustbase]; }; + MVN = derive2 { name="MVN"; version="5.5"; sha256="05jl9g7jyx6a5fc8bw5si393s7f9swygma8h461v8abqbakihb2q"; depends=[boot energy kableExtra magrittr MASS moments mvoutlier nortest plyr psych robustbase]; }; MVR = derive2 { name="MVR"; version="1.32.1"; sha256="03dbd5nib8cx0rwdi4g9fihbkdxazpvbdjh7sfnavsyyrgnqa31m"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; - MVar_pt = derive2 { name="MVar.pt"; version="1.9.9"; sha256="1lhy66k9x9ymj03d4f7wi6rdx60bwgy6gfv49jq3vr4cj8dv22i9"; depends=[]; }; - MVisAGe = derive2 { name="MVisAGe"; version="0.2.0"; sha256="18w3qf85l81sbxhzxs61jbsng14lbd8vzvbprq0ywkxb2lsq16n2"; depends=[]; }; + MVar = derive2 { name="MVar"; version="2.0.2"; sha256="0h1sm2vzjg86v3sv43pbf9fxjx5d6bxx519aa25y0r27nh9fif5y"; depends=[]; }; + MVar_pt = derive2 { name="MVar.pt"; version="2.0.2"; sha256="0b7qgfa180vv2m6l5vqxqc96700srdzzix2kwccfvjimby522a1b"; depends=[]; }; + MVisAGe = derive2 { name="MVisAGe"; version="0.2.1"; sha256="1plrzzj7cr2hxk1npadvjnk7sanhilh99l5vrkjjh3l6li2ym09b"; depends=[]; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; - MXM = derive2 { name="MXM"; version="1.3.3"; sha256="1xzw7ad3kpd8chfksgfsv0wdy7h1kzw5n410ndfhd1mx1cdfghj9"; depends=[doParallel dplyr energy foreach geepack hash knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; }; + MXM = derive2 { name="MXM"; version="1.3.5"; sha256="0pmv6qya38kxsys39qzdgh7zqjz7i052f25xmqwc5fa4l08jmm6a"; depends=[bigmemory doParallel dplyr energy foreach geepack hash knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; - MagneticMap = derive2 { name="MagneticMap"; version="1.0"; sha256="1634bk6x92z01gyiy89c1g6z5cjsj8pf4f358y7rk2kppmfz4cf7"; depends=[scatterplot3d]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; ManifoldOptim = derive2 { name="ManifoldOptim"; version="0.1.4"; sha256="0c5hw01nlnxrys8d9qhwvnls834i0081pf9iic9kx5k6ckc7iwha"; depends=[Rcpp RcppArmadillo]; }; - ManlyMix = derive2 { name="ManlyMix"; version="0.1.11"; sha256="0vnx4cmx5vv8qh3pn75lz1mxap1ar4jnc5j15552vvi4i9pgmmar"; depends=[]; }; + ManlyMix = derive2 { name="ManlyMix"; version="0.1.14"; sha256="0zpcc74965n435d4fah41r9nz0kjyn46hkjl1s0kvlllqj6n69wg"; depends=[]; }; ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.1"; sha256="19gafyql767f1p4fxdw7d5a8z1b4vg7jfrvzaml5x16fj6c78fjm"; depends=[]; }; MapGAM = derive2 { name="MapGAM"; version="1.1"; sha256="0sh7qnzzahaz09nmld5p8df93my6k5vpvgmvqdlz84vghcfbfpa2"; depends=[colorspace gam maptools sp survival]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.4"; sha256="1wap0syzgd0w3xla2x4bcasn8zzlj63r5yyf9r479nvifjxdqxzz"; depends=[tkrplot]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.5.1"; sha256="1v7ly1yaglyh257b1q4vc7sfrk41lb4ar9dpwf5ppap581pgpz3f"; depends=[boot magrittr purrr]; }; - MarkowitzR = derive2 { name="MarkowitzR"; version="0.9900.0"; sha256="1wyqlgmb376dsvx7nixpbynjzp7xpmsh4fx9s7nai6fhjb50mxha"; depends=[gtools matrixcalc sandwich]; }; + MarkowitzR = derive2 { name="MarkowitzR"; version="1.0.1"; sha256="1dz5ig16yz5n8i1dqrbg5xjigryznk61br80fj20prq4qhsdsqi6"; depends=[gtools matrixcalc sandwich]; }; + MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; MasterBayes = derive2 { name="MasterBayes"; version="2.55"; sha256="14532l41x5k3z2qg0vklafqyzmn45qny9hlrrgriykajv3xjf2lz"; depends=[coda genetics gtools kinship2]; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatchIt = derive2 { name="MatchIt"; version="3.0.2"; sha256="1pp91pw2sy9hik4sgn4gcsp40hb01n9pfccrwdcffwji5fd1aavq"; depends=[MASS Matching]; }; MatchItSE = derive2 { name="MatchItSE"; version="1.0"; sha256="01ghv3hdlsx6ypvsh7k0mi20yc8vg7z602mhcprhhh97qsb81v6h"; depends=[Rcpp RcppArmadillo]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.0"; sha256="015s3xdaj56prq8lsdry3ibjkrb6gg0fwgzjh496gdx5axvpbk8g"; depends=[Hmisc Matching]; }; - Matching = derive2 { name="Matching"; version="4.9-2"; sha256="0lv5b41l797c4bl2rzmdqzjnn47zpvvcv3md3xwxvvz5knxky5x4"; depends=[MASS]; }; + Matching = derive2 { name="Matching"; version="4.9-3"; sha256="00mw02379dg6da19glfz9bbbhz902b0ppp9p66rgayd0fmnk9gqz"; depends=[MASS]; }; MatchingFrontier = derive2 { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[igraph MASS segmented]; }; Matrix = derive2 { name="Matrix"; version="1.2-14"; sha256="15hknim84nj3f54vkchca5ac0c3ip15v1by18k5parmn8wsl19j9"; depends=[lattice]; }; Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.7"; sha256="1x64r4aj3gy1dzjjysyrk1j9jq3qsnyrqws8i6bs7q8pf6gvr7va"; depends=[grr Matrix]; }; @@ -2117,13 +2121,13 @@ in with self; { MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.5.2"; sha256="0k64yzn7qnjxkxxqg5yrgq1ksdp37qfx0yc8a2n1zrdwj9f9ba2i"; depends=[dplyr lubridate rgdal rgeos rmapshaper rvest sp stringr xml2]; }; MazamaWebUtils = derive2 { name="MazamaWebUtils"; version="0.1.5"; sha256="065l1n2nr5jsc0mdlxj10plzp8m09025hzbd8if3pn6gsl520b6l"; depends=[dplyr futile_logger stringr webutils]; }; McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; - Mcomp = derive2 { name="Mcomp"; version="2.7"; sha256="1bv88z0cy2ark9i8wggxj101bygpsfkaxql5k0g7m90jlq8b4xr1"; depends=[forecast ggplot2]; }; + Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; MeanShift = derive2 { name="MeanShift"; version="1.1-1"; sha256="02zf27xvk2zlmgxfyl5pwl2rdq8c30fb52x1mbpvlhmxjbhg6fsn"; depends=[wavethresh]; }; MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.0"; sha256="1gggia97ww4kiqhh2lnsmadgdxvpr36mdx1yrbgarj0sp6ilrd3l"; depends=[]; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.6"; sha256="0cx2bkz5m96dirqknfsi9944rhnn14wwdimw1hq1p8c073z40i7a"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; - Mega2R = derive2 { name="Mega2R"; version="1.0.2"; sha256="0v56sd0q8bxirjm851sjba52sb846ccqn7bihy0zm4fkqlfdm5m3"; depends=[AnnotationDbi DBI GenABEL GenomeInfoDb pedgene Rcpp RSQLite SKAT]; }; + Mega2R = derive2 { name="Mega2R"; version="1.0.4"; sha256="1c51bway05rqywvw05022cjlqzciidqz9xwz17iwf536gndc348p"; depends=[AnnotationDbi DBI gdsfmt GenomeInfoDb pedgene Rcpp RSQLite SKAT]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.3.0"; sha256="1nnj4nmzrvdj2arq74bg5ckhmll2z9ydnd75ds48njbhxla2645l"; depends=[ggplot2 iterpc knitr Matrix plotly rmarkdown robustbase]; }; MenuCollection = derive2 { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[gplots RGtk2 RGtk2Extras]; }; MergeGUI = derive2 { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; }; @@ -2134,16 +2138,16 @@ in with self; { MetSizeR = derive2 { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; MetStaT = derive2 { name="MetStaT"; version="1.0"; sha256="0400gx6i8xlkm51da98ap91c3hgrkgfgxswn0plaxfry3625khkp"; depends=[abind MASS pls]; }; MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; }; - MetaComp = derive2 { name="MetaComp"; version="1.1.1"; sha256="0ndnjpg0c9k4171n190qwxmy79kw2ax4y5ap4xvaf0x561p072l6"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; }; + MetaComp = derive2 { name="MetaComp"; version="1.1.2"; sha256="1yb115qdmf5rxmjl4y7qr0i6668n46scs4yjpfq9bmy3w9i4ji1x"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; }; MetaCycle = derive2 { name="MetaCycle"; version="1.1.0"; sha256="1kzdk21xpbvwibs8501zwdb9lzj7g5nv2zqaskg9x0szshhg8vpp"; depends=[gnm]; }; MetaIntegrator = derive2 { name="MetaIntegrator"; version="1.0.3"; sha256="0611k497ixy0f51lmqzs08zqqq5krrxrm7m0xqdl18gkwrw3w656"; depends=[Biobase DBI GEOmetadb GEOquery ggplot2 gplots multtest preprocessCore reshape rmeta Rmisc RMySQL RSQLite stringr]; }; - MetaLandSim = derive2 { name="MetaLandSim"; version="1.0.3"; sha256="0zf45c6prr1g9xqsn4f5cxh30qvadbk0hzknz2hff6ljggjxxfia"; depends=[coda e1071 fgui googleVis igraph knitr maptools minpack_lm raster rgeos rgrass7 sp spatstat zipfR]; }; - MetaLonDA = derive2 { name="MetaLonDA"; version="1.0.9"; sha256="1iy7p91ln48fhym7gna8xmqrva6fcwxapqcyh1h6hqr0h3j392qd"; depends=[caTools DESeq2 doParallel edgeR ggplot2 gss metagenomeSeq plyr]; }; + MetaLandSim = derive2 { name="MetaLandSim"; version="1.0.4"; sha256="1dflmm59p4dkrs8iad4b4sc9qcv0x8707irf62mznczlg4mrni4z"; depends=[coda e1071 fgui googleVis igraph knitr maptools minpack_lm raster rgeos rgrass7 sp spatstat zipfR]; }; + MetaLonDA = derive2 { name="MetaLonDA"; version="1.1.0"; sha256="0pmbq6f5dqq29h56wsrnq3nyk5s281jc8vh89h2wkbj9djay4bw0"; depends=[caTools DESeq2 doParallel edgeR ggplot2 gss metagenomeSeq plyr]; }; MetaPCA = derive2 { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; }; MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; MetaQC = derive2 { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive2 { name="MetaSKAT"; version="0.60"; sha256="13qffirv0lnj0bflzjpr2hd0d8j4bkakyfjvicp40f0v4v3cack2"; depends=[SKAT]; }; - MetaSubtract = derive2 { name="MetaSubtract"; version="1.3"; sha256="0z7l666n3whfs5zqjqlq1aa10f1h4mv1di0alksllkijfi6pcnzq"; depends=[]; }; + MetaSubtract = derive2 { name="MetaSubtract"; version="1.42"; sha256="070j46fp0kb5g9iyd7x4nnaqi1sqxsly3fmka361nzik4pr2x8a3"; depends=[]; }; MetaboList = derive2 { name="MetaboList"; version="1.2"; sha256="15wkj29s1mxi1wzqzlh8lkr5jkw15dbc37h3hzsc0r72a3ddzf38"; depends=[enviPick]; }; MetaboQC = derive2 { name="MetaboQC"; version="1.0"; sha256="1hm0ndwda1ciyyg8igkpaalvvdyd7aq5wnl9gzza8fr1l9fxp4a2"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; }; @@ -2159,7 +2163,7 @@ in with self; { Metrics = derive2 { name="Metrics"; version="0.1.3"; sha256="1mpqbi1lihxgndfpm8b6c5hiibvnscz1b5xjgi16x2fqk3cz4i0z"; depends=[]; }; MfUSampler = derive2 { name="MfUSampler"; version="1.0.4"; sha256="0i5siq1jacxbfvakb97qnj3h7pk471rrx8ckwm0d8nl3j586s36y"; depends=[ars coda HI]; }; MiRAnorm = derive2 { name="MiRAnorm"; version="1.0.0"; sha256="154wv0j82xyc4y5cd2czh0q8kzhgrk6qsn0ahc1zn3fnrzc9fgz0"; depends=[ArgumentCheck cluster dendextend ggplot2 MASS npmv plyr reshape2]; }; - MiRKAT = derive2 { name="MiRKAT"; version="1.0"; sha256="1j2sasxrld9lxmhm4lrrxm2r32nfdiqsg5qjnplx7z55djjxqq4m"; depends=[GUniFrac MASS PearsonDS survival]; }; + MiRKAT = derive2 { name="MiRKAT"; version="1.0.1"; sha256="1adhy9ysjm8xa45sb4x17ryznvg91c9xdf0irpcgc7rbg34rxf5x"; depends=[GUniFrac MASS PearsonDS survival]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; }; @@ -2174,30 +2178,32 @@ in with self; { MissMech = derive2 { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l4wxlahk2gmawzv9rhyibwzf0yp60cb1sv9"; depends=[]; }; MissingDataGUI = derive2 { name="MissingDataGUI"; version="0.2-5"; sha256="0drbm87ka17avg6fmswjilgnz9c3azwd0236s8yfms24k9k77vnd"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; }; MitISEM = derive2 { name="MitISEM"; version="1.2"; sha256="0dn398vrxh16gmy7ghh5000dgk7cbhb3gi3myrxp5dfri3ysjxcj"; depends=[mvtnorm]; }; - MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.2.0"; sha256="1r6hamc4vanxdbmp37ib20drw49c4vxkskqb93qlagaqxgr9xch0"; depends=[stabledist]; }; + MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.3.0"; sha256="0lp3jazmcg90gp019djr4xx8zwxrrmjidp53rc2v7s122razn9lr"; depends=[stabledist]; }; MixAll = derive2 { name="MixAll"; version="1.4.2"; sha256="1m3jkavamx1c2zzalh9j8psk69jmbh4lyl0sxn4x30whv0km5mvp"; depends=[Rcpp rtkore]; }; MixGHD = derive2 { name="MixGHD"; version="2.2"; sha256="1cq6mar6h56nscnd7xs6spf45mlqp48lssw2i57zfvi75f6s70p4"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; }; MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; + MixSAL = derive2 { name="MixSAL"; version="1.0"; sha256="15dymyzfs3bwskaf6xndj291g6nhw7k1q93y1cba55a6fdjh5qz9"; depends=[MASS]; }; MixSIAR = derive2 { name="MixSIAR"; version="3.1.10"; sha256="0kc0apzl6aq9qjgrnnad78k71g91hzc1d7f3j0s1kpwzax2q6l2l"; depends=[bayesplot coda ggmcmc ggplot2 lattice loo MASS MCMCpack R2jags RColorBrewer reshape reshape2 rjags]; }; MixSim = derive2 { name="MixSim"; version="1.1-3"; sha256="1mrzbax2inpmhxz26zlybci6ks5q780f10vcy1za638dmkz16fnv"; depends=[MASS]; }; MixedDataImpute = derive2 { name="MixedDataImpute"; version="0.1"; sha256="123c9i3znv53ikfnga1z9gq5bdl4vyww89967255wg5dzb7w00cn"; depends=[BH gdata Rcpp RcppArmadillo]; }; MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; MixedPsy = derive2 { name="MixedPsy"; version="1.0.0"; sha256="19cgw82jdkcpkca90bab1k5gcb2prlxm634n4m7yx0p0mj736fha"; depends=[beepr boot brglm lme4 Matrix mnormt]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; + MixfMRI = derive2 { name="MixfMRI"; version="0.1-0"; sha256="08k8j52mrjpcrnwz74va4w3cdfrbkzp00wdzrrrzifx7lcmxrqzv"; depends=[EMCluster fftw MASS Matrix MixSim RColorBrewer]; }; MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; MlBayesOpt = derive2 { name="MlBayesOpt"; version="0.3.3"; sha256="0aazcf94gckgxd51r21hv3msa18br5xcq8xp03w448di546qzbnn"; depends=[data_table dplyr e1071 foreach Matrix ranger rBayesianOptimization rlang xgboost]; }; + MmgraphR = derive2 { name="MmgraphR"; version="0.2"; sha256="0al65hsqpak44w5zvdzhyh6l1q981lzyvx37hbcy0z0qn3vz16kn"; depends=[colorspace march TraMineR]; }; MoEClust = derive2 { name="MoEClust"; version="1.1.0"; sha256="1442x2ajiib1fgj6bc3zlqy9q3bjnhnn29f7fjin99lq7c5r132p"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; MoTBFs = derive2 { name="MoTBFs"; version="1.0"; sha256="09ymfgw6psc1y0dczvsrsw5cki58wn0d8vj56ydfylrxn24g3jfq"; depends=[bnlearn lpSolve quadprog]; }; Mobilize = derive2 { name="Mobilize"; version="2.16-4"; sha256="16vdvpwspa0igb52zvzyk0if9l4wq1hm8y42572i8sh1m82wyyfs"; depends=[ggplot2 Ohmage reshape2 wordcloud]; }; - Modalclust = derive2 { name="Modalclust"; version="0.6"; sha256="16h90d30jwdrla5627rva0yf69n0zib9z5fl3k5awlqfscz4fw26"; depends=[class mvtnorm zoo]; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; }; ModelMap = derive2 { name="ModelMap"; version="3.3.5"; sha256="1rmm1a2nw91kzvxpvq9qhlag0dhihis7mgscgslqia6z8fr86qvs"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; ModelMetrics = derive2 { name="ModelMetrics"; version="1.1.0"; sha256="119xxmzb5biq7k1yxqsf0jmmarmfn6lds9x9hfgv593xlpym6za8"; depends=[Rcpp]; }; Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; }; - Modeler = derive2 { name="Modeler"; version="3.4.2"; sha256="0zf3z3y4w1jixmcbhkgrjh4dx7x3bfi66hrbzsxyfp7abk0p2d6l"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; }; + Modeler = derive2 { name="Modeler"; version="3.4.3"; sha256="1k2zwky0i15kypa9mdqc51qipah6pf1zgkrb6xc76xsavjyacfjm"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; }; MomTrunc = derive2 { name="MomTrunc"; version="1.41"; sha256="0az499xzvnczqnbh4g3h5jyz8isq0zdw0x654haac6v6045f5xav"; depends=[matrixcalc mvtnorm]; }; Momocs = derive2 { name="Momocs"; version="1.2.9"; sha256="13pgn31hv529z33mi020w8wm8ya7hyi5yfsp45a78wdhinqas9mm"; depends=[ape dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer rgeos sp]; }; Mondrian = derive2 { name="Mondrian"; version="1.0-0"; sha256="07r64q518diphai951pw4vfaw4sd6bqwhi6q5cp4pcl3aqjynkmj"; depends=[RColorBrewer]; }; @@ -2207,32 +2213,29 @@ in with self; { MonoPhy = derive2 { name="MonoPhy"; version="1.2"; sha256="0997kg8hfwgsc9s155z0wrf7rrhn3vf6681j9psjl3hsspg08z2r"; depends=[ape phangorn phytools RColorBrewer taxize]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-9"; sha256="130hv05fwsskk1bvr7fk8bmafq26vimkfgssjdk3zaz0hm3pxrp4"; depends=[quadprog]; }; MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.5"; sha256="0a62wq448kq10mf1nhdr0nybzzz7d63nxakggpzmkzz4fz0l67bd"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; - Morpho = derive2 { name="Morpho"; version="2.5.1"; sha256="1cxxsg7j0fq9drxkl6xlaw7j2cajzx9khcs9f3mb9l2ixd42hqnp"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; + Morpho = derive2 { name="Morpho"; version="2.6"; sha256="11v0lv1mfyp252y20jxlr9bym3rh8mcr2v25qhvq1133jr420lyd"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; - MortCast = derive2 { name="MortCast"; version="1.1-1"; sha256="077kk08pckm07rh7vxiw8whiyc4fbsj3qihih6mg09slaq8zr825"; depends=[wpp2017]; }; - MortHump = derive2 { name="MortHump"; version="0.2"; sha256="1yhrdcwqf27v22mrysh51m3jcrnf74x21x7db25nic8q8fdmchj2"; depends=[demography HMDHFDplus Matrix minpack_lm MortalitySmooth RColorBrewer svcm WeightedCluster]; }; - MortalityLaws = derive2 { name="MortalityLaws"; version="1.3.0"; sha256="1db4p7kl3kh3kdzqbbvyj3zxv6pz0jnc9fl7j2590ajwd5m9crg4"; depends=[minpack_lm pbapply RCurl]; }; + MortCast = derive2 { name="MortCast"; version="1.2-0"; sha256="1lmkqywcb3acfmbknxpl62n87rv4qz7hq2kyl98x8l62w6swabr6"; depends=[wpp2017]; }; + MortalityLaws = derive2 { name="MortalityLaws"; version="1.4.0"; sha256="1440fhwhmg72q7nv3cpnb658vhlkz586i17h82jjwr4v63almq8m"; depends=[minpack_lm pbapply RCurl]; }; MortalitySmooth = derive2 { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; }; MortalityTables = derive2 { name="MortalityTables"; version="1.0"; sha256="07pbjgc4qvznw1rfvmz6ndg0gzj0k61iajwn51ijpb7hscwi8937"; depends=[ggplot2 scales]; }; MotilityLab = derive2 { name="MotilityLab"; version="0.2-5"; sha256="080j548sp1c4yqqd7p7zgr70j1xyrw3fgjj1f521sgh84x5h2hbc"; depends=[ellipse]; }; MplusAutomation = derive2 { name="MplusAutomation"; version="0.7-2"; sha256="0hy6g0fgidjpz7mn1qwwdnhyxjm0v2g9r3fl32zmkvix3852qx1r"; depends=[boot coda digest ggplot2 gsubfn lattice pander plyr texreg xtable]; }; - Mposterior = derive2 { name="Mposterior"; version="0.1.2"; sha256="16a7wvg41ld2bhbss480js5h12r41nl7jmc3y4jsbv1lr5py4ymy"; depends=[Rcpp RcppArmadillo]; }; MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; }; + MuChPoint = derive2 { name="MuChPoint"; version="0.6.1"; sha256="15bqsc7bsjg55qxjwxh58bxbwz61a6wv4xxph994g4020b98l01x"; depends=[capushe Matrix Rcpp shiny]; }; MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; MuMIn = derive2 { name="MuMIn"; version="1.40.4"; sha256="1xw7b74qg0ivgk3l1krjn2wrl969c41hr0y2nk0z8fw94xcfggyr"; depends=[Matrix]; }; MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; }; MullerPlot = derive2 { name="MullerPlot"; version="0.1.2"; sha256="0am5brdmbh2mw74fbw9nha6h4qlhj8psg3142mql1ad99bd0zg4w"; depends=[RColorBrewer]; }; MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; }; MultEq = derive2 { name="MultEq"; version="2.3"; sha256="0fshv7i97q8j7vzkxrv6f20kpqr1kp9v6pbw50g86h37l0jghj7r"; depends=[]; }; - MultNonParam = derive2 { name="MultNonParam"; version="1.2.5"; sha256="12jfpqs77qxzy7vj6adx9im3qmzqvgwk4bnxmr26k3z48css242l"; depends=[]; }; - MultiABEL = derive2 { name="MultiABEL"; version="1.1-6"; sha256="09lwpfpa2x812m7hmy7dxsz4ysv486xfk08r7ag8lbw3ym034vvl"; depends=[data_table svMisc]; }; + MultNonParam = derive2 { name="MultNonParam"; version="1.2.6"; sha256="1w9kp7qswz38r2xfi8sc52kc52c8hi2jzjsh8gj4491ds1lilv0r"; depends=[]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.2.0"; sha256="00prkn5awxrh365j1jz312har1x4p8v52a0sqfy00pqr44ncmqqq"; depends=[fastGHQuad Matrix mvtnorm]; }; MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.11"; sha256="1qls0qp5fz377h50lvpzq3vkw49i3nvizli98gss50nqci8ssqm4"; depends=[limSolve MASS]; }; MultiMeta = derive2 { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[expm ggplot2 gtable mvtnorm reshape2]; }; MultiOrd = derive2 { name="MultiOrd"; version="2.3"; sha256="157bsd5x3cw2yyv5y1hccpn7v42lqf99w09m6kdm0rxnhgjm8k1v"; depends=[corpcor Matrix mvtnorm psych]; }; - MultiPhen = derive2 { name="MultiPhen"; version="2.0.2"; sha256="095avrxxi5q5nwi5kd6drz9az5fjq668my7z658mjdf3fl58csjm"; depends=[abind epitools gplots HardyWeinberg MASS meta RColorBrewer]; }; MultiRNG = derive2 { name="MultiRNG"; version="1.1"; sha256="1kljkxwl0ym0dzvhvj2jqkp8077wdgkcqfi3m4zrjcxdblzjmm00"; depends=[]; }; MultiRR = derive2 { name="MultiRR"; version="1.1"; sha256="1jrhx3nlqwsv3i6r8fs142llw88qad41rsh0sj1pv1gb928zpvl3"; depends=[lme4 MASS]; }; MultiSV = derive2 { name="MultiSV"; version="0.0-67"; sha256="0924lvkx12aqjxxz8bwqdi4h9xc2acf8aynllx0m45ip5r4gh1g2"; depends=[nlme reshape]; }; @@ -2241,8 +2244,8 @@ in with self; { MultiVarSel = derive2 { name="MultiVarSel"; version="1.1.2"; sha256="07qdi43bg03xyr99361c0565m1i5kzqjbvlc2npnyjyc2ygr386d"; depends=[glmnet Matrix tidyverse]; }; MultinomialCI = derive2 { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; }; MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.1.0"; sha256="1g6yqp53dbd96jcjgmif39zb3a7f9zil10dhqi3vz3qv6r2vsnkj"; depends=[foreach MASS]; }; - MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.17"; sha256="0s67w8ifd7g231aqq0qdia13kyb1cczhxrigsgrw48pqcfkv9208"; depends=[lpSolveAPI]; }; - MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.1"; sha256="0x13q2kckw7c7bl35vdxyhhr7ij62wf0qbkxa40fi6aq2gjh89m6"; depends=[lme4 Matrix statmod]; }; + MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.18"; sha256="1d7cqa44yayyhwkl5wkp68b7vxakfnlwkprs811z8c2fmfm8vk5r"; depends=[lpSolveAPI]; }; + MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.2"; sha256="1z9nh8iywlsjsrrmpm6h8hcnaqvh93dldn5rhp4wnj3c7db8qscy"; depends=[ggplot2 lme4 MASS psych statmod]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.5"; sha256="0mww4x1hqraiyvmw2f9s6h180kplmj36hb7zfg7xlkmgdf4apk8d"; depends=[bootstrap Rcpp]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; My_stepwise = derive2 { name="My.stepwise"; version="0.1.0"; sha256="10wka6kzk8krwdsyjfnn78dfqflq4zg3vjkk0i2ywjm5vap6aqa5"; depends=[car lmtest survival]; }; @@ -2250,11 +2253,12 @@ in with self; { Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; }; NADA = derive2 { name="NADA"; version="1.6-1"; sha256="1jjlm6rljk4nv6b7l2w3xnj31j61wq30sp5pnna8wav6gyjqjfmb"; depends=[survival]; }; NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; - NAM = derive2 { name="NAM"; version="1.5.5"; sha256="1g3jvqvzs0wmy1phz25irfb5xh4274cdwcjm5dxmqnjdh30d31n3"; depends=[randomForest Rcpp]; }; + NAM = derive2 { name="NAM"; version="1.6.1"; sha256="1cyi5vc2ppwfd7bixm21cyy4z9alcx2dz316zgwnc5n3jy0wdb81"; depends=[randomForest Rcpp]; }; NAPPA = derive2 { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9az6kdz9xw7m98z1gnvl2g7damvn3"; depends=[NanoStringNorm plyr]; }; NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; }; NB_MClust = derive2 { name="NB.MClust"; version="1.1.1"; sha256="0hzmrszxgx3pylf9pjjwk2ryjhwz7naxxkhcqpnfjv337vv5dg0i"; depends=[MASS]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.3"; sha256="1657mqwn5i1b0g0gva387zl02vpymn98f71b0p7i7xv033mqnpqw"; depends=[]; }; + NBLDA = derive2 { name="NBLDA"; version="0.99.0"; sha256="1fd6f43yhwvdb81r0b9hpmna5bphhqcgwiwjkpdyqz4h9cdmsj21"; depends=[ggplot2 sSeq]; }; NBPSeq = derive2 { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; }; NCA = derive2 { name="NCA"; version="2.0"; sha256="08951mmmpziljclwzmbni1s5a62wr9s80iyfsr07gkdz4sx3cvqf"; depends=[gplots KernSmooth quantreg sfa]; }; NCSampling = derive2 { name="NCSampling"; version="1.0"; sha256="0bv93xffnzvbip86b3pg7apxzh3410mxff77q119m0z7f6vm3fam"; depends=[lattice randomForest yaImpute]; }; @@ -2264,6 +2268,7 @@ in with self; { NEff = derive2 { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; }; NEpiC = derive2 { name="NEpiC"; version="1.0.1"; sha256="11zf112xcsg3k93vks2fnsflw2v2d56a0bsjpd460d21k3gipfz8"; depends=[igraph PairedData]; }; NFP = derive2 { name="NFP"; version="0.99.2"; sha256="1wnllzlww8257sbrgvfyvd21qvhf7j17mcpf6d4p6binaw8svnsb"; depends=[apcluster dplyr ggplot2 graph igraph KEGGgraph magrittr plyr stringr tidyr]; }; + NFWdist = derive2 { name="NFWdist"; version="0.1.0"; sha256="0833lg0pd763awrc6ibidwf2ldl79w9lmm5acq4bnpd2hzsx60l8"; depends=[]; }; NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHEMOtree = derive2 { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; }; NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; }; @@ -2273,6 +2278,7 @@ in with self; { NIRStat = derive2 { name="NIRStat"; version="1.0"; sha256="1hi8201zslp1f7m3jci8q03y3f1zlcck2x3i793l7lsyl7qbzd1z"; depends=[ggplot2 gridExtra mgcv]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; }; + NITPicker = derive2 { name="NITPicker"; version="1.0.0"; sha256="0dls638mjkl8qnfx6gnzfa2ba8w6wcnq7np8lmvp9kw7fkqxnslb"; depends=[fda fda_usc fdasrvf]; }; NLMR = derive2 { name="NLMR"; version="0.3.0"; sha256="0cqs48jy9ydivjpmx76dyxxdhh3lww7qrmx5s8jcsxxxnn93lq8m"; depends=[checkmate dplyr fasterize purrr RandomFields raster sf spatstat tibble]; }; NLP = derive2 { name="NLP"; version="0.1-11"; sha256="15v50gxzmpqx49wzkwxfpb5xjpg9y829a0ifys372kf1cfj521aq"; depends=[]; }; NLPutils = derive2 { name="NLPutils"; version="0.0-4"; sha256="1dqbf8xmrzx81ybmp5qkd5a5rw3c19l2wxfnpddij4a1n074bwym"; depends=[NLP qdap SnowballC]; }; @@ -2280,10 +2286,10 @@ in with self; { NMF = derive2 { name="NMF"; version="0.21.0"; sha256="1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"; depends=[cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; - NMOF = derive2 { name="NMOF"; version="1.2-2"; sha256="03286pp57m7imbgw334r34yg7c5zbaw3d1qxr0sbhmc2jxvv1arm"; depends=[]; }; - NNLM = derive2 { name="NNLM"; version="0.4.1"; sha256="1wi2rbj56v49hsnhwdyyjwfk4hb84sagfq6mpjis4ccq65hxkvfv"; depends=[Rcpp RcppArmadillo RcppProgress]; }; + NMOF = derive2 { name="NMOF"; version="1.4-3"; sha256="1anq2q8a7gyghrnlrkk7k4njpxfnr2944ksyqx8nk8bqhp1k8fcr"; depends=[]; }; + NNLM = derive2 { name="NNLM"; version="0.4.2"; sha256="18hk476mnd89pzrxb65hg20j6cyk2l4l95ksf7vh73fwpxr1dz4q"; depends=[Rcpp RcppArmadillo RcppProgress]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.0"; sha256="02k766klw2fssiii5f4291qvs144ab9i5b6pmqvhyr87zdb87nf9"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.3.8.6"; sha256="0dfnqy2i306vvqah40p3mj7yyxr9gxrgw8555p6shjiwhqp8rdaq"; depends=[data_table rgl stringr]; }; + NNS = derive2 { name="NNS"; version="0.3.8.7"; sha256="0fbqnkhg4dq2ld5l48b3l5aaa7zl4wrkkk7ds6y7a1228xnsaq1g"; depends=[data_table rgl stringr]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NOAAWeather = derive2 { name="NOAAWeather"; version="0.1.0"; sha256="077c7z13y2lhjzk2fbb9yfa1ay31dfryxmyg76z7l1a03h20xrvb"; depends=[dplyr ggExtra ggmap ggplot2 gridExtra jsonlite lubridate RCurl scales tcR tidyr]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; @@ -2297,16 +2303,15 @@ in with self; { NPHMC = derive2 { name="NPHMC"; version="2.2"; sha256="000x9y00gfkaj5lf00a55b9qx15x05yp3g3nmp8slyzsnfv66p5d"; depends=[smcure survival]; }; NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="2.1"; sha256="1v15ylgflbdr03pgh55fan1l6mymd1d5n6h9jhbcqahjlcsxkwq3"; depends=[]; }; NPMOD = derive2 { name="NPMOD"; version="0.1.0"; sha256="1m3rfgyxdbyr0m5vznav5qk70ch45wz3dc8wccxjcxrcfkn8i18k"; depends=[BSDA clinfun gWidgets nortest pspearman readxl rlang RVAideMemoire]; }; - NPMPM = derive2 { name="NPMPM"; version="1.0"; sha256="14rjj48vfj4wv1na5v181jby016afx4ak1fs0f3g1fif4kbgbdx0"; depends=[]; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.1"; sha256="0sq47frh665m8mibif1w3i2z5pb577v1ngdjirbya0a9chpmwc3s"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; NSA = derive2 { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; }; - NSM3 = derive2 { name="NSM3"; version="1.11"; sha256="0lnmzpmh3i4lh5lfba6rhacf4zadbcrs7ify354h5245j0gxp1bv"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; + NSM3 = derive2 { name="NSM3"; version="1.12"; sha256="0spkzx2zm8q85h7ij9r52bsqlwgw2fsc7zw3aaz8644q0xlnjnvj"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; NScluster = derive2 { name="NScluster"; version="1.2.0"; sha256="04mn9lh4cl1hkz27z7ldqnfwmrvqi7m1zrvscpywdcilpjmcryv0"; depends=[]; }; - NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.1"; sha256="1grz2yxrklqglw9027c8k01jnb42p453fcd38arw4wd85y5hbam4"; depends=[snowfall]; }; + NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.4"; sha256="1f8hmabwafjmgx2z381a3m84zfrd0s9x51haa4c1phq41yfq2lm5"; depends=[]; }; NanoStringNorm = derive2 { name="NanoStringNorm"; version="1.2.1"; sha256="05r1hvrxwi2mcq3pv6b699291qg120ijad96s5dah2f6cwx7gm7j"; depends=[gdata vsn XML]; }; NatureSounds = derive2 { name="NatureSounds"; version="1.0.0"; sha256="1gx0h0z3zc373l0mxcigc25s41l3yiylzsrir5k4rrr2bvzgf8ir"; depends=[]; }; @@ -2319,49 +2324,50 @@ in with self; { NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; - NetLogoR = derive2 { name="NetLogoR"; version="0.3.2"; sha256="1dqskma7iw178sy6gz0gr00zg84jgh95dv8w3hwz1wxsqpbpf1sb"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; - NetOrigin = derive2 { name="NetOrigin"; version="1.0-2"; sha256="1ldlx4nmc5k756fmbm9vxn9rwzxmad84zpi6318pjr52izms6q2k"; depends=[colorspace Hmisc igraph]; }; + NetLogoR = derive2 { name="NetLogoR"; version="0.3.3"; sha256="1msln8k3rllsb414c35pw90bral039vijjrfhd7xzk9267jcv7vk"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; + NetOrigin = derive2 { name="NetOrigin"; version="1.0-3"; sha256="162dhyx7z1nd3z14lfvm3dz0qwwvrc3n17zswbnwcfj6g1b1p2f1"; depends=[colorspace Hmisc igraph]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.1"; sha256="0r51dqymf2nqm86py4zwdlf7qf120j0bg9r6a9c0gsyyijh4z40p"; depends=[graph]; }; - NetRep = derive2 { name="NetRep"; version="1.0.4"; sha256="1a58wxmjhd2jm5n6bl5l2706fbvfvjksfaal65fy04ssw14nziw8"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo ref RhpcBLASctl statmod]; }; - NetSim = derive2 { name="NetSim"; version="0.9"; sha256="07h4qwz64k8zj8c2mx23cbnhg4rqrb4nfh20xw98kspz7cisdg6d"; depends=[Rcpp]; }; + NetRep = derive2 { name="NetRep"; version="1.2.1"; sha256="0adlnq22nslp8ildbrf0z26783kzgz4cyn45a981qyjbw4c42hin"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; NetWeaver = derive2 { name="NetWeaver"; version="0.0.2"; sha256="0wsmz7db8q2fycz6rfbbfs67ccj857y9zs4d80k1gnqazgj5whkn"; depends=[]; }; NetworkChange = derive2 { name="NetworkChange"; version="0.3"; sha256="1brpa6fhmrgafmk1iw19g0pppwxi0ld0nyhx9c0fgnkn9m82isjk"; depends=[abind ggplot2 ggvis LaplacesDemon MASS MCMCpack mvtnorm RColorBrewer Rmpfr]; }; NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.0.1"; sha256="09fqlnpdibf9jr5mw2pzmwi66f6cjz8rmm8jay0cv2bami7jhy2a"; depends=[IsingFit IsingSampler qgraph reshape2]; }; NetworkDistance = derive2 { name="NetworkDistance"; version="0.1.0"; sha256="0k11crn1wiisw4qrc2yidrhdvscx59skqy4ckxdiykpb1jh5a7s4"; depends=[doParallel foreach igraph Matrix network Rcpp RcppArmadillo Rdpack RSpectra]; }; NetworkExtinction = derive2 { name="NetworkExtinction"; version="0.1.0"; sha256="1scza639kf3zzz2yd9q31wsvxpvpq8hbx82a206jkxlxb4dq6vxr"; depends=[broom dplyr ggplot2 magrittr network scales sna tidyr]; }; - NetworkInference = derive2 { name="NetworkInference"; version="1.1.2"; sha256="0lydfkpgsi842fbapnggpngarvqc8arhy4qn13x47myk1mmkkisj"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; }; NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.2"; sha256="0c10nahybjd1n0yr78ynbsdnkfa0p7kz6dx3rbwxwsp3x4mrcd6y"; depends=[dplyr expm ggplot2 Matrix]; }; - NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.1.1"; sha256="19gn50f96nnccgv68vp6850pjdcl433lmppshc2imcjw4hn45fra"; depends=[corpcor corrplot doSNOW fdrtool foreach graph hypergeo igraph MASS Matrix ppcor psych pwr qgraph R_matlab RBGL RColorBrewer]; }; + NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.1.2"; sha256="1wgiwbackqwdis1mw3nyrv3wgi8c8s49cl16f8l46yn7763nkskf"; depends=[corrplot doSNOW fdrtool foreach igraph IsingFit MASS Matrix ppcor psych pwr qgraph R_matlab]; }; NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.1"; sha256="1dsjv0vm45skw74x1fz3gd7g6p52ayfwz85bh92j29mfxbnacbnn"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; NightDay = derive2 { name="NightDay"; version="1.0.1.1"; sha256="1gwwxk428gkvci4dhfb3zikvidalpqkl0q2r6qpm58c12j14jk1h"; depends=[maps]; }; - Nippon = derive2 { name="Nippon"; version="0.6.5"; sha256="187jzqsabg0vfvipbaig6nsdwclk5p3hgkvg0yid2ip8qc5qcmdw"; depends=[maptools sf sp stringr]; }; - NipponMap = derive2 { name="NipponMap"; version="0.1"; sha256="09cvzw32f0kwlwvrv7r6cx2x2jkc2wv843aip8r3iziixmcy7vxq"; depends=[sf tibble]; }; + Nippon = derive2 { name="Nippon"; version="0.7.1"; sha256="1nw0kaqw5my2bx7i82q4j2qlsmc95kgjnbm9r9np3swhq6wizrmq"; depends=[stringr]; }; + NipponMap = derive2 { name="NipponMap"; version="0.2"; sha256="0jk3zz05vhximbbm15h7ngb0ffxp5w8zhisifipkdgvg1hpi7pb7"; depends=[sf tibble]; }; NlcOptim = derive2 { name="NlcOptim"; version="0.5"; sha256="0chrf9ac3x1a0b86lf6wjzdsjcv5n08rav88b7xf4c31lflf1rd1"; depends=[MASS quadprog]; }; NlinTS = derive2 { name="NlinTS"; version="1.3.2"; sha256="1isr6ci6dsbbx804y3hc8aqvhggfs7ix5yiz32dby69i85b6lj5a"; depends=[Rcpp Rdpack timeSeries]; }; NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.6"; sha256="1kdqifwjkkk4x1ixg3ca6lbqx79ab907nnzwxca5iw721mbk5njg"; depends=[lavaan]; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; - NonCompart = derive2 { name="NonCompart"; version="0.4.1"; sha256="0a701lx83vf79pvym2igg2wbkhnx0jykfiglwhic4hvl1lw0f4g2"; depends=[]; }; + NonCompart = derive2 { name="NonCompart"; version="0.4.3"; sha256="14wvr17p0dza11p97vmjcn27l73vmw5ms3gbrgxcxm33ybwya63n"; depends=[]; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="3.0"; sha256="13qk2wbgpdf763q5xg29p2hxwqpml23pcgxrzmx12vnapnqfh71k"; depends=[dr]; }; Nonpareil = derive2 { name="Nonpareil"; version="3.3.1"; sha256="0ldl90h499wwm992cj71phf3ryqvjnq0ygarcxf7h85krr4j3sx2"; depends=[]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; - NormPsy = derive2 { name="NormPsy"; version="1.0.7"; sha256="1v6jlbxiapkygivx5vv4ravs86n94qxlmj4q940jjfbbk24bssdc"; depends=[lcmm]; }; + NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.2-0"; sha256="11z568zhb7jw9ghp6wlyf26ijm25crc5pqhzw71qgvva42nsmmwn"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NormalizeMets = derive2 { name="NormalizeMets"; version="0.25"; sha256="0hnyr2aklibbvs6b6q4l0zbb9g8qmp2ds4lqic8a9alqn66sfnf2"; depends=[AUC crmn e1071 GGally ggplot2 htmlwidgets impute knitr limma plotly rmarkdown]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; Numero = derive2 { name="Numero"; version="1.0.3"; sha256="1jj269b5cw7w4bgp6qvh0b3kpj32fjpsb2nbhyhjlkf7m03gnwwv"; depends=[Rcpp]; }; + NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="0.99.2"; sha256="1vzha3ywjbd877fqy3r2xkgi8m44s3ss65bij0vcc4mx8lajhgb5"; depends=[ggplot2]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-0"; sha256="1c57jxb9n397wdkrirbfh70sxllrg9zsy0np698z7kcx83rz5lqr"; depends=[curl xml2]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBRE = derive2 { name="OBRE"; version="0.1-0"; sha256="1sxfb8mn0ky8x177l3v6wwcr96h5hfwd718h1akwrpir7acldchl"; depends=[pracma]; }; - OBsMD = derive2 { name="OBsMD"; version="2.1"; sha256="1w5d23m3nzswin803icw9vsafqcis2lkzr5bnhaa3bl5dq1xn5q5"; depends=[]; }; + OBsMD = derive2 { name="OBsMD"; version="3.0"; sha256="1swjmcg9zl374x14qj03km4pi6xil79h0v55jxyx0pq210dvipzn"; depends=[]; }; OCA = derive2 { name="OCA"; version="0.1"; sha256="0kaf46gic8gp8f98y68kqvgm1baicwgvarfiwry1j0bd2rjad64d"; depends=[]; }; ODB = derive2 { name="ODB"; version="1.1.1"; sha256="1hha4rkbc2zh3karkqa0vn4v0nmcd7sljcymy1nh28bx1gx2ffgs"; depends=[DBI RJDBC]; }; + ODEnetwork = derive2 { name="ODEnetwork"; version="1.3.1"; sha256="0j6kw32hq9gfiwmyh4zxx7ibfxplhass7q309y8r656lkhvr9nin"; depends=[checkmate deSolve]; }; + ODEsensitivity = derive2 { name="ODEsensitivity"; version="1.1.1"; sha256="06s561450fimn1fvky56nvz9j0nzmbh1hm5x9p1zygsxvzgrks36"; depends=[checkmate deSolve ODEnetwork sensitivity]; }; OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; }; - OECD = derive2 { name="OECD"; version="0.2.2"; sha256="07flhhca7734fffcqvxjl1hlhbbhn6lch868rlpps0r99jxy8m5q"; depends=[httr rsdmx xml2]; }; + OECD = derive2 { name="OECD"; version="0.2.3.999"; sha256="02bldn2c5cnjx171ckqrrb06v50m7zps20sb6k1crmx550vmgajc"; depends=[httr rsdmx xml2]; }; OGI = derive2 { name="OGI"; version="1.0.0"; sha256="0qw55jamkvdf3vfa5c0ygbymbs4d9q15dihiqz691hdfnyjvc2mk"; depends=[lpSolve]; }; OHPL = derive2 { name="OHPL"; version="1.3"; sha256="0hm229nyv96s3sjljn5rwh89g1n6wsf24qm3ll5ccb0q2pcwnd7r"; depends=[glmnet mvtnorm pls]; }; OIdata = derive2 { name="OIdata"; version="1.0"; sha256="078khxrszwnrww2h0ag153bf59fnyhirxy4m56ssgr2gmfahaymf"; depends=[maps RCurl]; }; @@ -2383,10 +2389,11 @@ in with self; { OSTSC = derive2 { name="OSTSC"; version="0.0.1"; sha256="0p92w25xvajsn44rd5hg1m7l9l4m0rpmw175nnqr438432hqh7cc"; depends=[doParallel doSNOW fields foreach MASS]; }; OTE = derive2 { name="OTE"; version="1.0"; sha256="18w483syhs523yfib9sibzmj16bypqxk4sc4771kfr1958h3igai"; depends=[randomForest]; }; OTRselect = derive2 { name="OTRselect"; version="1.0"; sha256="1bh14228yz552ngywjf1qyh1isqj4cgiy7n7d4zg8dpqwxr04ykp"; depends=[lars survival]; }; - OTUtable = derive2 { name="OTUtable"; version="1.1.1"; sha256="0mjjfndc67gzkqskcq4sxpr8fwx3lm3wjgapgg64rbj5x4i1w4rp"; depends=[]; }; + OTUtable = derive2 { name="OTUtable"; version="1.1.2"; sha256="1sm037ihm12xyp7ns5f0c1psflvm1aj3xnsj5nzh2rsjn35hvd6h"; depends=[]; }; OUwie = derive2 { name="OUwie"; version="1.50"; sha256="1gzgwax9kmcr6rl6nv10xn536nbkjhmg6sqax58xxinc00ykdx75"; depends=[ape corHMM corpcor expm lattice nloptr numDeriv paleotree phangorn phytools Rmpfr]; }; Oarray = derive2 { name="Oarray"; version="1.4-9"; sha256="04jng89s19rd8lbjm76wm4p4ggkffwnsa5qa60c4lwn2rj89a8a1"; depends=[]; }; OasisR = derive2 { name="OasisR"; version="3.0.0"; sha256="0dk8asv5v0qiqqf45r3hhh67sa03qdkpgsss649mp2pxzm8chv1y"; depends=[measurements outliers rgdal rgeos seg spdep]; }; + Observation = derive2 { name="Observation"; version="0.2.0"; sha256="0v81manzcvv8x9hbf75c8klslzdabha53rasyba91vvcbrshhq6j"; depends=[AGread svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.4"; sha256="072gjbka7ncp5sa463kbi06fjx7nm1ljgzpx4b7ybq9pcwvnyzz6"; depends=[plot3D plot3Drgl rgl shape]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; Ohmage = derive2 { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; }; @@ -2399,14 +2406,14 @@ in with self; { OneArmPhaseTwoStudy = derive2 { name="OneArmPhaseTwoStudy"; version="1.0.3"; sha256="0q8g33s1jq0ipvwq83xhrly8idsh68licgyivxc628zbm1id5p38"; depends=[Rcpp]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; - OpVaR = derive2 { name="OpVaR"; version="1.0"; sha256="03bl7z78zgjmpc0mpmcq98zfscj3jja1fiwzx58rw5yk0dhqrhm8"; depends=[actuar evmix goftest MASS ReIns tea truncnorm vcd VineCopula]; }; + OpVaR = derive2 { name="OpVaR"; version="1.0.5"; sha256="14kq95i8n0g1wy3s32llw3803qzkxlyz9307clc1bwzi0wp22x5f"; depends=[actuar evmix goftest MASS pracma ReIns tea truncnorm vcd VineCopula]; }; OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.3"; sha256="0mmn4dpk1wl8slg55xzhpk7jdwhkrka53rwmrsr73sikkh3mcyfn"; depends=[digest ggplot2 httpRequest igraph plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; OpenCL = derive2 { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; }; OpenImageR = derive2 { name="OpenImageR"; version="1.0.8"; sha256="1j7p1wrzznrisbzw8j1qsxyyv3zr5hk6q9yxw97y6lrfh3c26ig1"; depends=[jpeg png Rcpp RcppArmadillo shiny tiff]; }; OpenML = derive2 { name="OpenML"; version="1.8"; sha256="04m2gi35hykqs4iy3ipvi41cmkv8vg145cpafjrsf98kj7jg4pmv"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; }; - OpenMx = derive2 { name="OpenMx"; version="2.9.6"; sha256="0141q6rwppwab426fn65vcnj06nivibl11aqi8dp32rcxgi5s9y8"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; - OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.10"; sha256="0ikw8l9hffcaa094y6pnvyc3ly5jb02djaakz668ba15a0yw0wmb"; depends=[abind colorspace GPArotation plyr psych pvclust rgl stringr XML]; }; + OpenMx = derive2 { name="OpenMx"; version="2.9.9"; sha256="02p125r83r63zjysd94s1wvmxp1gh38dpqs3r8ly5qzdx5jzk5yf"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; + OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; }; Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; }; OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; @@ -2419,14 +2426,15 @@ in with self; { OptimalDesign = derive2 { name="OptimalDesign"; version="0.2"; sha256="1gpcasdbcgqqr1l6f63q4jqva28rpz0cbgs1f4l3bizldd9kf4kh"; depends=[]; }; OptimalTiming = derive2 { name="OptimalTiming"; version="0.1.0"; sha256="1mchb7wdk1v56la30ivi40aq6zma64lrdb94d64d0s7x67m8315w"; depends=[mstate survival]; }; OptionPricing = derive2 { name="OptionPricing"; version="0.1"; sha256="0j98h3fn29xfv7xyp7av459v56chw99pnvmsbqvrv4g77p60f5q2"; depends=[]; }; + Orcs = derive2 { name="Orcs"; version="1.0.0"; sha256="0bkd5mfb6jmn5iwrcjmbxxp81ncdr5h5ii7im2ryai2205pmcqsa"; depends=[bookdown devtools knitr lattice latticeExtra plotrix raster Rcpp rgdal sf sp]; }; OrdFacReg = derive2 { name="OrdFacReg"; version="1.0.6"; sha256="16mavsmp6d8rfmimmp5ynwyzir0gycpg8rhd8cwanlrndyclqlpv"; depends=[eha MASS survival]; }; - OrdLogReg = derive2 { name="OrdLogReg"; version="1.1"; sha256="18s75pmz1g3yac2rfl41kj8sfflq298qkijnvqlybgxpq98ickxx"; depends=[LogicReg]; }; OrdMonReg = derive2 { name="OrdMonReg"; version="1.0.3"; sha256="1xca8pvvq79j484l2rmn4nva8ncx8z51g5diljikck231y8qjqaz"; depends=[]; }; OrdNor = derive2 { name="OrdNor"; version="2.1"; sha256="1s3lhkscr4w36qjq02qlb3pw37naq0k99khr9648qzshhzsfxibl"; depends=[corpcor GenOrd Matrix mvtnorm]; }; OrdinalLogisticBiplot = derive2 { name="OrdinalLogisticBiplot"; version="0.4"; sha256="1axn03yrw30r2j9ss5ig9sq857y37vhrr4a7px68jc2az8mng41j"; depends=[MASS mirt NominalLogisticBiplot]; }; OrgMassSpecR = derive2 { name="OrgMassSpecR"; version="0.5-3"; sha256="1dx9d8rb1dfqyhyc26zhfnxiv3rz2ikvs2mwqnsrq3lsjs9dvyc8"; depends=[]; }; OriGen = derive2 { name="OriGen"; version="1.4.3"; sha256="0a7mql87dqxrfx7phgy32hbanfwnjx8x52mj83xf2mgmqhrcikr6"; depends=[ggplot2 maps]; }; OrthoPanels = derive2 { name="OrthoPanels"; version="1.1-0"; sha256="1g78abh9i3x0g34vjqz2ic9330rbgn8k0hgdcrznxgsfnlgnpx9x"; depends=[MASS]; }; + OscillatorGenerator = derive2 { name="OscillatorGenerator"; version="0.1.0"; sha256="0zqw8l955msxkdviw5vd493749zwc22qby9mfmyqnqqmq0pyjw4w"; depends=[]; }; OutbreakTools = derive2 { name="OutbreakTools"; version="0.1-16"; sha256="1ffqfr1pwlf53ahbh01ygv3d2d8fl47k9kk61l2h0g4h601swadi"; depends=[ape ggmap ggplot2 knitr network networkDynamic plyr RColorBrewer RCurl reshape2 rjson scales sna]; }; OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; }; @@ -2436,41 +2444,40 @@ in with self; { P2C2M = derive2 { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; PAC = derive2 { name="PAC"; version="1.0.10"; sha256="0cr34vjd6dr5jkbv1hhd7ln35ih8h62fmz2q8h2plbxaww88zcjf"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; PACBO = derive2 { name="PACBO"; version="0.1.0"; sha256="1v3j5bgvf0wh8s4d2yyz0fkc3acdwjlicwnbh1r241b1742x79cb"; depends=[mnormt]; }; - PAFit = derive2 { name="PAFit"; version="1.0.0.3"; sha256="0s9zxr9368cf6skskqb2q67jkynzm4s3qp07i0m1zrmn9142hw9z"; depends=[igraph magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; + PAFit = derive2 { name="PAFit"; version="1.0.0.4"; sha256="178hxn376q911kc6nsbkbgi7s26nhw5clzv7iiq6c7ns6dg7npr7"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; }; PANICr = derive2 { name="PANICr"; version="1.0.0"; sha256="167s1p7y8mmhcdnng0s5i09kjfh088jhmxs74rkyda52l9hyx363"; depends=[coda MCMCpack xts]; }; PARSE = derive2 { name="PARSE"; version="0.1.0"; sha256="0y408va1rfn3j8cb1i0k8kypyg9mb6yfj513l54f23z31d3bi45m"; depends=[doParallel foreach gplots mvtnorm]; }; - PAS = derive2 { name="PAS"; version="1.2"; sha256="0q5g9j8xb9fl7r8f1w5gk5h83ll5w1r6m2gq9ilw8w8s96pm4xd8"; depends=[glmnet]; }; + PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; PASWR = derive2 { name="PASWR"; version="1.1"; sha256="1rxymnqvflypc6m62f5vw65l8x1m2yah7r11hhpmzdq2l2sg8fci"; depends=[e1071 lattice MASS]; }; PASWR2 = derive2 { name="PASWR2"; version="1.0.2"; sha256="04vwgmi56spjriwp2ls5zcgslfg1y4pvwa0m33f9izay0y6q2wfx"; depends=[e1071 ggplot2 lattice]; }; PASenseWear = derive2 { name="PASenseWear"; version="1.0"; sha256="0x84j1vdds4g08birmjxb0c2g1ahwv83bk11532jkmg32dnhmj58"; depends=[ggplot2]; }; PATHChange = derive2 { name="PATHChange"; version="1.0"; sha256="1pmxhaych01cywx9bb5z0p5lbxcma7x6nlprivpx3gnpg7m9srpg"; depends=[rlist stringr VennDiagram]; }; PAWL = derive2 { name="PAWL"; version="0.5"; sha256="1sx4g4qycba2j1fm0bvhz3hk6ghhdc37rz5zi1njqxrpmbnkqg04"; depends=[foreach ggplot2 mvtnorm reshape]; }; - PAactivPAL = derive2 { name="PAactivPAL"; version="2.0"; sha256="1mjfxq0a9fql8bg5c6l5w1knjqq29cb4l10ppxnym9gnsjrk0kw1"; depends=[]; }; PAmeasures = derive2 { name="PAmeasures"; version="0.1.0"; sha256="0c2pkms06lijly9clxp6zkasqy4zjicdwnvbqwvhp45yavwmkkkj"; depends=[survival]; }; PBD = derive2 { name="PBD"; version="1.4"; sha256="1n8gq8ms6gszr469hblipbgalc5m7gfiknpsbqywxml62sr4wbsb"; depends=[ade4 ape DDD deSolve phytools]; }; PBIBD = derive2 { name="PBIBD"; version="1.3"; sha256="0zh73bsiwmsqw1vhs2dazndsf0894kfv3vfv88wr4fnh7njysz6r"; depends=[]; }; PBImisc = derive2 { name="PBImisc"; version="1.0"; sha256="18gjp66q6l0w6vsgm6d5sjgpa906z1gyyp6yf58lq5vyg1bnfmcl"; depends=[lme4 Matrix]; }; - PBNPA = derive2 { name="PBNPA"; version="0.0.2"; sha256="1qyjksm2z1p279aimb3zaaaj4328m5p0cbkqm3qzl87yp5g45vyq"; depends=[metaRNASeq]; }; + PBNPA = derive2 { name="PBNPA"; version="0.0.3"; sha256="1wmgcmspilfv6pjy7696j2xmq8m41p27plnr1qr0fnzyz66pf37m"; depends=[metaRNASeq]; }; PBSadmb = derive2 { name="PBSadmb"; version="0.68.104"; sha256="01akimdsp0bkvz3a5d75yyy3ph0mff85n8qsnr59fla5b5cm4qlj"; depends=[PBSmodelling]; }; PBSddesolve = derive2 { name="PBSddesolve"; version="1.12.2"; sha256="12pl95mcak88524s8zvk9dzib2g40fwaz6iz7igx9wg6vib9d1sj"; depends=[]; }; - PBSmapping = derive2 { name="PBSmapping"; version="2.70.4"; sha256="09kzydgghgmhnna24gpq1hjgw7w9i1lm6nwkj358jsik6fjph73r"; depends=[]; }; + PBSmapping = derive2 { name="PBSmapping"; version="2.70.5"; sha256="15h28lb0zriaf4020l3a069plrklbvbg5x231r5fqflshj6v8a9f"; depends=[]; }; PBSmodelling = derive2 { name="PBSmodelling"; version="2.68.6"; sha256="1d5shqvzfyi0fy03wcib2db497nsdw211ahfcvl1kaady1immz2w"; depends=[XML]; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; PCA4you = derive2 { name="PCA4you"; version="1.2.4"; sha256="117wb0h4jqjymm1p90m6vgj713iavrmj035c2gz5nynligvfnm83"; depends=[mixOmics]; }; PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="3.1"; sha256="0flrsnbchwk06dmkg3vqykp9n4pqs265szn1r10navp8ki3rrmvh"; depends=[]; }; PCDSpline = derive2 { name="PCDSpline"; version="1.0"; sha256="15kmvcwvwlsr1107n7mfajvf9b1kcslnhsdx0drjjhsvq193qrqa"; depends=[matrixcalc nleqslv]; }; - PCDimension = derive2 { name="PCDimension"; version="1.1.8"; sha256="1359cmswynv9xqbfb60kh32ifm9wgm20iplkdfzf5v2c4vxd0rmf"; depends=[changepoint ClassDiscovery cpm kernlab oompaBase]; }; + PCDimension = derive2 { name="PCDimension"; version="1.1.9"; sha256="1i9ay632ssq0xw58clh48dlqq429252dy0czg1qpkvsvb7dvab9c"; depends=[changepoint ClassDiscovery cpm kernlab oompaBase]; }; PCFAM = derive2 { name="PCFAM"; version="1.0"; sha256="196jzv0f6j60zkyagm9n98339ipn8mrhmhl3q4g053z8f6mm9zmv"; depends=[]; }; PCGSE = derive2 { name="PCGSE"; version="0.4"; sha256="0ky1nzhz6v9n34kas9nw2scc6ip7av19g09zcsxaa9436nhip4f6"; depends=[MASS RMTstat safe]; }; PCICt = derive2 { name="PCICt"; version="0.5-4.1"; sha256="17ipmv6ps7c9dv4k9kxjjynnlgr63baz9z9ndwfg0lckc3vw81ya"; depends=[]; }; PCIT = derive2 { name="PCIT"; version="1.5-3"; sha256="0gi28i2qd09pkaja4w7abcl7sz43jnk98897vc2905fnk9nks65j"; depends=[]; }; PCMRS = derive2 { name="PCMRS"; version="0.1-1"; sha256="10n4am4qm23aaghf8awv2llcq7392s62yr6mf5h8nf18hfz29wrn"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; - PCPS = derive2 { name="PCPS"; version="1.0.5"; sha256="1v5173zskkyc79b68a3x0b1harq5xp4igisf94ajgqqmkpf61qcp"; depends=[ape phylobase picante RcppArmadillo SYNCSA vegan]; }; - PCRedux = derive2 { name="PCRedux"; version="0.2.5-1"; sha256="1p5qmz09ajbm1iypyz5rn9bwzbbx57gc6a0xzrm900dw2r2cf7ph"; depends=[bcp changepoint chipPCR ecp fda_usc FFTrees magrittr MBmca pbapply plotly pracma qpcR robustbase testthat visdat zoo]; }; + PCPS = derive2 { name="PCPS"; version="1.0.6"; sha256="0mihkivlpycqbzc3z8clsmiqg3c6hqnapk29h794lf99had03hp8"; depends=[ape phylobase picante RcppArmadillo SYNCSA vegan]; }; + PCRedux = derive2 { name="PCRedux"; version="0.2.6-1"; sha256="0pirra4fx2s4ks34ng7fc2vjcmzym3ffpld901glf8hppycsgf6c"; depends=[bcp caret changepoint chipPCR ecp fda_usc FFTrees magrittr MBmca pbapply plotly pracma qpcR randomForest robustbase testthat visdat zoo]; }; PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7"; sha256="00920h0qlw81vwh46inmvm4mdv0dfd8xvqvrj7l038hhmjb7qsjz"; depends=[GPArotation MASS Matrix ThreeWay]; }; @@ -2481,7 +2488,7 @@ in with self; { PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIP = derive2 { name="PEIP"; version="2.2-1"; sha256="0bzynmd7azs33994dlsabxp29lncs1v2njp6iy5l62rwrnxj9y0a"; depends=[bvls fields geigen Matrix pracma RSEIS]; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; }; - PET = derive2 { name="PET"; version="0.5.0"; sha256="0k26lfkb58sdqy5b5kd7dkd7nzhxqh1b8pxyx2bdl0lx50sn94jc"; depends=[adimpro]; }; + PET = derive2 { name="PET"; version="0.5.1"; sha256="1gdq7ai8hgl9h53b72j7sfk09l7yr2b84pdy9bl1z3x8zxbsp8br"; depends=[adimpro]; }; PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; PGRdup = derive2 { name="PGRdup"; version="0.2.3.3"; sha256="1s0v44922zpxl3w9kzn9xzvs5jldg35gjrnlf89f89i3rs59gg98"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; @@ -2490,24 +2497,25 @@ in with self; { PHeval = derive2 { name="PHeval"; version="0.5.3"; sha256="1zq4ks6w5vrhy1f170fv16zgrgi1lfxmkpfkg75sjin7asw4i7a9"; depends=[survival]; }; PIGE = derive2 { name="PIGE"; version="1.1"; sha256="0pc24rvvxzpgrsx7xsj98n5vd462hjggakzwp36qdkib69yyr4bn"; depends=[ARTP snowfall survival xtable]; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; }; - PINSPlus = derive2 { name="PINSPlus"; version="1.0.0"; sha256="1vyn6hz4b0gzpvs6m0lbs09vv8531z74vkm2ss1244gn991p7iif"; depends=[cluster doParallel entropy foreach pbmcapply]; }; + PINSPlus = derive2 { name="PINSPlus"; version="1.0.1"; sha256="02yxv1x06p6vr50g4amj4wwjlk04wadic74d1wpkxxg69zpv35lz"; depends=[cluster doParallel entropy foreach pbmcapply]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-4"; sha256="1zkjq64p34gzbsbmbdqphssnplzz65wpl486qf4yhawnb4wnkj1v"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-5.1"; sha256="1xs3jxbczhkxnp7cyw2yh1jcwha92y9pdsbka1ligbla70bnvxyj"; depends=[base64enc]; }; - PKNCA = derive2 { name="PKNCA"; version="0.8.4"; sha256="013b4d74virwjpxq20m566ya85q31aq6bdgk5fpjrwh5ja6805ka"; depends=[digest dplyr lattice nlme plyr rlang tidyr]; }; + PKNCA = derive2 { name="PKNCA"; version="0.8.5"; sha256="0lklg2w1rcas70rj72q390n6lkxq557731a90b7plh2g32xsp32k"; depends=[digest dplyr lattice nlme plyr rlang tidyr]; }; PKPDmisc = derive2 { name="PKPDmisc"; version="2.1.1"; sha256="1p47zdhilprzcwarfmisq7g7znr73wgxns43mn3d7w5sv671mygv"; depends=[BH data_table dplyr ggplot2 lazyeval magrittr purrr Rcpp readr rlang stringr tibble]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; PKgraph = derive2 { name="PKgraph"; version="1.7"; sha256="0g36cdv5cblqx69j48irxjc5nlw2cl3p714mlsblnd3362z1brwn"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 lattice proto rggobi RGtk2]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; PLIS = derive2 { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; }; - PLMIX = derive2 { name="PLMIX"; version="2.0"; sha256="1dvlzv3hajdj3cc83kkna7igzppy88dwppap12zaxnh2afwpvv7k"; depends=[abind foreach gtools label_switching MCMCpack rcdd Rcpp]; }; + PLMIX = derive2 { name="PLMIX"; version="2.0.1"; sha256="1m1v745v5gd5npxl5cz3dqm2839wyl5j8qx6d66nnqbqj6ywg15v"; depends=[abind foreach gtools label_switching MCMCpack rcdd Rcpp]; }; PLRModels = derive2 { name="PLRModels"; version="1.1"; sha256="0dwnzfw7a1cxz9s00kxf19jmjsc8cy6cc9q2mjqf8z7690wrg7hb"; depends=[]; }; PLSbiplot1 = derive2 { name="PLSbiplot1"; version="0.1"; sha256="1l8d1k913ic0qwxvrrd447p5ni3mzc6v9lv45b7vqrpzkxdci6gy"; depends=[]; }; - PLmixed = derive2 { name="PLmixed"; version="0.1.2"; sha256="1pi4ivw090lbg983d8wymhk0i97jrzi1nrkrrz3llnafadysh4rh"; depends=[lme4 Matrix numDeriv]; }; - PLordprob = derive2 { name="PLordprob"; version="1.0"; sha256="156lvz6vfm68hm32l5nlhq15hfacdla627d6lf8l4g34lwzdh8k8"; depends=[mnormt]; }; - PMA = derive2 { name="PMA"; version="1.0.9"; sha256="11qwgw4sgzl3xhrm468bsza83h3mfn89157nfwnrassl7qr42xkq"; depends=[impute plyr]; }; - PMCMR = derive2 { name="PMCMR"; version="4.2"; sha256="1dqfn68034xkik4xfl8mlqsh7x427f7cwna5axj8gvjcj9l48x8c"; depends=[]; }; - PMCMRplus = derive2 { name="PMCMRplus"; version="1.0.0"; sha256="11sliznixsrrlr0y365hxpg64jfva8l1ilrnkdd32ddy8713sin7"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; + PLmixed = derive2 { name="PLmixed"; version="0.1.3"; sha256="0n2d7mzviwlw2d1mk3rwhcac170khgfsdivwysqxji2qwgdhgl32"; depends=[lme4 Matrix numDeriv]; }; + PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; }; + PMA = derive2 { name="PMA"; version="1.0.11"; sha256="1v8h66l602zd74mw73ygsy667nqg8p0k0wqhbsjl1imafl207s5d"; depends=[impute]; }; + PMCMR = derive2 { name="PMCMR"; version="4.3"; sha256="09bvdj2h1086r2cgy3myrhlylplxxlliv8nwx09c8kb1vn02i2ij"; depends=[]; }; + PMCMRplus = derive2 { name="PMCMRplus"; version="1.2.0"; sha256="13gn16k6gg7fv9rjx5bf6q3zfx3499s52m5k59n053nr4i5d8215"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; + PMmisc = derive2 { name="PMmisc"; version="0.1.0"; sha256="12nw64x88cb1amqgdpcdmkiwcg3vs3kdlxlz0kw7frwgaw3l0l06"; depends=[robust]; }; PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.4.1.1"; sha256="038xylgq3mp1nl5rf11swprv08khvzfw0jg5bmd0yvqmygr082jq"; depends=[dplyr magrittr RCurl readr readxl survey timeDate]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; @@ -2516,44 +2524,46 @@ in with self; { PP = derive2 { name="PP"; version="0.6.1"; sha256="10innn1nhc4zqimd0gww7k3k30jkfkkj89zkddcjqa2sqq5gs3xr"; depends=[Rcpp]; }; PP3 = derive2 { name="PP3"; version="1.2"; sha256="1g36al9w1rxyhfzbvpw9siqq57h2xl0zr94wysz8i0jzqkkqkrvf"; depends=[]; }; PPCI = derive2 { name="PPCI"; version="0.1.2"; sha256="1k6kbln0h1wkzg594k1db6r3nk5dqwhg8gm1hgval05dsdhp8j8b"; depends=[rARPACK]; }; - PPRL = derive2 { name="PPRL"; version="0.3.5"; sha256="1j8qfa6ipk9x6w7g5y0lz14cf72s2zpkrp5gk2qbvx1pm3w1zyh6"; depends=[Rcpp settings]; }; - PPforest = derive2 { name="PPforest"; version="0.1.0"; sha256="1s0g8icyx30sih2xbdihp9xbmygfgd1hs642qdl5559fqshylbzs"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tidyr]; }; + PPQplan = derive2 { name="PPQplan"; version="0.1.0"; sha256="06v4agq8bd3ssbfnl1jyfzy5xi4jwj6wqfmj9qalrv9kllh839mv"; depends=[ggplot2 plotly tolerance]; }; + PPforest = derive2 { name="PPforest"; version="0.1.1"; sha256="0iplbw5b2vhqbp6gc123ykzmilwa80akljkv3jzfmi90ckm4k08m"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tidyr]; }; PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.3"; sha256="1x5rcls49jz19y3h98n2k4kypm8mv8p586clhdj62bvp2nl8wg3x"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; + PQLseq = derive2 { name="PQLseq"; version="1.0"; sha256="1r4zxwb3rw7k9jixv1wqkgdq5zjlwf85xrc0np8j96k1gdwals72"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; PRIMME = derive2 { name="PRIMME"; version="2.2-0"; sha256="1iwwh871v87fz6j6q9nvfiq8x8nz2v87n52l80a15d5rvvxv2rbi"; depends=[Matrix Rcpp]; }; PRIMsrc = derive2 { name="PRIMsrc"; version="0.7.5"; sha256="12wfb4p8ra1b8xwq42350cxl2fy9gsrp5m7inyxnh31vplgripy9"; depends=[glmnet Hmisc quantreg superpc survival]; }; - PRISMA = derive2 { name="PRISMA"; version="0.2-6"; sha256="1yzcx4js0xaxp1mp7ginhfz8jji49rkw3x15a9mlmpz260gkfs98"; depends=[ggplot2 gplots Matrix]; }; + PRISM_forecast = derive2 { name="PRISM.forecast"; version="0.1.6"; sha256="0w0fjbaafq90ac35h70z8g95q1i812v0ivkif4lx8l3q7rhjrvb5"; depends=[glmnet xts zoo]; }; + PRISMA = derive2 { name="PRISMA"; version="0.2-7"; sha256="0sk2d07m8rhipa0kdbaf8ngryda6f1ihp5akpnyw2llajf0x8as5"; depends=[ggplot2 gplots Matrix]; }; PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.1"; sha256="1qk9cljk52m8rcasck8cl7gwzhcsx0p58jn31izy2j027w0rns7j"; depends=[DiagrammeR]; }; - PROFANCY = derive2 { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[igraph lattice Matrix]; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; PROreg = derive2 { name="PROreg"; version="1.0"; sha256="0c2vgzbdi29rlrnrb971dqrl7rlb9y3rw8nj5rjgwsjqxv607ssj"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; PROscorer = derive2 { name="PROscorer"; version="0.0.1"; sha256="0mgj0mi0vzdk0agimsx4k9i4bss0j5lqiayzhldr1hrqrx2a4f3d"; depends=[PROscorerTools]; }; PROscorerTools = derive2 { name="PROscorerTools"; version="0.0.1"; sha256="1vliffkfqdn5l96bncfgayv19i20kmawlxi8q853wamj6npdpv5r"; depends=[]; }; - PRROC = derive2 { name="PRROC"; version="1.3"; sha256="03hvh92lq4i4w4mla9bvwrwb4626f4hvlxgdn57hamp70960vjyc"; depends=[]; }; - PReMiuM = derive2 { name="PReMiuM"; version="3.1.7"; sha256="1l2ibwn5z647dwhrjzgrz3qqzdbkqk3zrpn95hy4ysa32pdz300n"; depends=[ald BH cluster gamlss_dist ggplot2 plotrix Rcpp RcppEigen]; }; + PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; + PReMiuM = derive2 { name="PReMiuM"; version="3.2.0"; sha256="0aib10kalc8y1vdkbd8ipdkg9wyb984pwf979fm8d6jjbdhp0sa7"; depends=[ald BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen]; }; PResiduals = derive2 { name="PResiduals"; version="0.2-5"; sha256="05jk543lv8isbxv24cbzqh80l6xs05lx2k9xzz7s0121vb2yd3v4"; depends=[Formula MASS rms SparseM]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; - PSCBS = derive2 { name="PSCBS"; version="0.63.0"; sha256="0pgha1rvb9nfxkr8fxc17zgws781qwmrl01rss7bd0sf2n2lw2k2"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; + PSCBS = derive2 { name="PSCBS"; version="0.63.0"; sha256="0pgha1rvb9nfxkr8fxc17zgws781qwmrl01rss7bd0sf2n2lw2k2"; depends=[DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; - PSM = derive2 { name="PSM"; version="0.8-11"; sha256="1p1a8k0c44z75vsh55yni5gxmw6znxw4x1mjbgwj59y1k3pf2aiv"; depends=[deSolve MASS numDeriv ucminf]; }; - PSPManalysis = derive2 { name="PSPManalysis"; version="0.1.1"; sha256="1mbgfblxflk12vr8y70a6avzjz9jh2m0wkmnzg0njgcwaqwvhlpm"; depends=[devtools]; }; + PSM = derive2 { name="PSM"; version="0.8-12"; sha256="0h83b7bhslgnrq4442464i9iil6gjhw3pwxvgz5313pfk2km30vg"; depends=[deSolve MASS numDeriv ucminf]; }; + PSPManalysis = derive2 { name="PSPManalysis"; version="0.2.0"; sha256="0vya2zlsmgf6zmkk9k9aaaqkx7qprknl0wazqlqd7zdp8z0zj39j"; depends=[devtools]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; - PSTR = derive2 { name="PSTR"; version="1.1.0"; sha256="1wzbwll5c2qsvngzqycg2zk6dghbr45mk8chj6kzzppmkk7vzj47"; depends=[ggplot2 snowfall tibble]; }; + PSTR = derive2 { name="PSTR"; version="1.2.1"; sha256="0vydm3s7m6fkwfnrfs29hwq7z5zfhrxx1ryvr3wrw1481ir29nc2"; depends=[ggplot2 magrittr plotly snowfall tibble]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; PTAk = derive2 { name="PTAk"; version="1.2-12"; sha256="1phxh2qbzsj2ia2dr6z30lhi765lk1m8lbk57sdgvm14fmi9v5nk"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.6"; sha256="0y2zqvm2d9minpc22ndq6mar3brbv9k6s1apl19zwpc8h5g3jx5l"; depends=[doParallel foreach survival]; }; PTXQC = derive2 { name="PTXQC"; version="0.92.3"; sha256="1spkbjji36s2dlhm5b8svpnjmana2jy1ppa0pfgjg7rpsp3369xq"; depends=[data_table ggdendro ggplot2 gridExtra gtable kableExtra knitr plyr proto RColorBrewer reshape2 rmarkdown seqinr yaml]; }; - PUlasso = derive2 { name="PUlasso"; version="3.1"; sha256="0cnnv9laga24h01aqkk7kzmmv2x5cgcq5l45w8vj5pvfyhvm4067"; depends=[BH doParallel foreach Matrix Rcpp RcppEigen]; }; + PUlasso = derive2 { name="PUlasso"; version="3.1.1"; sha256="092dwymmx3msj2wg8lrnnxib2y49g4s3yzy6fhfcl5wl0d2779ws"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; }; PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; + PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; PWEALL = derive2 { name="PWEALL"; version="1.2.1"; sha256="08a7ih9yyp0dqw89n1qhwbxhgiks91c3wjbaz08b6ck6cv6gzy6k"; depends=[survival]; }; - PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.0.16"; sha256="015zqbq9wsg0wc1y5s4x8vc7klkfa928xcl23v732vy28j0jf20h"; depends=[cluster dplyr dygraphs futile_logger ggmap httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaSpatialUtils openair png raster RColorBrewer readr reshape2 rgdal RgoogleMaps sp stringr xts zoo]; }; + PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.0.20"; sha256="0g15ib0zks6q7swpd9s5zyl3sp83r54959ckvc88wn19bmn8dj9l"; depends=[cluster dplyr dygraphs futile_logger ggmap httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaSpatialUtils openair png raster RColorBrewer readr reshape2 rgdal RgoogleMaps sp stringr xts zoo]; }; PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; }; Pade = derive2 { name="Pade"; version="0.1-4"; sha256="1kx5qpxd3x43bmyhk8g2af44hz3prhnrzrm571kfjmak63kym741"; depends=[]; }; PairViz = derive2 { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; - PairedData = derive2 { name="PairedData"; version="1.1.0"; sha256="1wga7cln8gvbvxycbbd859vq6gyjjvmcqvvzqmqdpwcdjf2j47gz"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; + PairedData = derive2 { name="PairedData"; version="1.1.1"; sha256="07y5fd4fkwfp0lbacf41ya8cn7x4n1haxl0cln9iibjffc1mbr5q"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; PairwiseD = derive2 { name="PairwiseD"; version="0.9.62"; sha256="19qjms99gf7s39nwwgj56n8426d0gw80dipz165sk3km4zb2mcwv"; depends=[openxlsx xlsx]; }; PakPC2017 = derive2 { name="PakPC2017"; version="1.0.0"; sha256="196jvhv7pv4pvnnz9izk6icxv3aml26mif0w6g4907izyszf8cal"; depends=[dplyr magrittr]; }; PakPMICS2014Ch = derive2 { name="PakPMICS2014Ch"; version="0.1.0"; sha256="0gjrx34613d9wzal292zfzh8hmkav271fqb0skdxd1f8rs2c79dg"; depends=[data_table]; }; @@ -2565,9 +2575,10 @@ in with self; { Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; ParallelForest = derive2 { name="ParallelForest"; version="1.1.0"; sha256="1xa9lfgrvzv7bvv1aaabcfk4372p8x5gxgj463h5ggf9x177lj5j"; depends=[]; }; + ParallelLogger = derive2 { name="ParallelLogger"; version="1.0.0"; sha256="16mwfylpk7r6cy87vb1d1h8mkwn32cmygpqvy5kk538lj9b8jcdl"; depends=[jsonlite snow XML]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParallelTree = derive2 { name="ParallelTree"; version="0.1.2"; sha256="0x99x1iycx8ik8cih972awnxifvmhbrmjrf2csmnn9fw4rsqn0p5"; depends=[ggplot2]; }; - ParamHelpers = derive2 { name="ParamHelpers"; version="1.10"; sha256="0nzsl3hby4dhnp7rw47zjmdrrfsgp5w1ai9fpw3bgc4k5sk9nql0"; depends=[BBmisc checkmate]; }; + ParamHelpers = derive2 { name="ParamHelpers"; version="1.11"; sha256="181p2r4zh53v6hjdr8fn7m1g65rl4svql8h1zjz25y1chk0g850n"; depends=[backports BBmisc checkmate fastmatch]; }; ParentOffspring = derive2 { name="ParentOffspring"; version="1.0"; sha256="117g8h0k65f2cjffigl8n4x37y41rr2kz33qn2awyi876nd3mh93"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; @@ -2579,7 +2590,7 @@ in with self; { PeakError = derive2 { name="PeakError"; version="2017.06.19"; sha256="1d4v7s478zjz42dm6ps4nnqqyyqv84dgmzn1bp1a4qwnfv9vmfg7"; depends=[]; }; PeakSegDP = derive2 { name="PeakSegDP"; version="2017.08.15"; sha256="1ndf4d4ikcyqi0k51kil2jw777z4c1m4pda3dahrjmjyz0jhrhkw"; depends=[]; }; PeakSegJoint = derive2 { name="PeakSegJoint"; version="2017.08.11"; sha256="1xp0gxdwsy6z06kbfg5ca2qm0kwva8scxbg22km20cikwpgdi6rm"; depends=[data_table PeakError penaltyLearning]; }; - PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2017.07.12"; sha256="0bpwm2n2wz707ykgd088zadi5jmixkwxx6822b6l6qw67x85pfyc"; depends=[penaltyLearning]; }; + PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; }; Peaks = derive2 { name="Peaks"; version="0.2"; sha256="0a173p5cdm1jnm7bwsvjpxh4dccy593g02c4qjwky1cgzy5rvin2"; depends=[]; }; PearsonDS = derive2 { name="PearsonDS"; version="1.1"; sha256="0rqh9ji0bah3n1c6fcg7krgqs65qla9p3xrnc4jr7va6ph104im9"; depends=[]; }; PearsonICA = derive2 { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; }; @@ -2588,8 +2599,8 @@ in with self; { PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; PepPrep = derive2 { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[biomaRt stringr]; }; PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; - Peptides = derive2 { name="Peptides"; version="2.3"; sha256="17nbjh06vi4syb0hlg7y646xik4csp3fs6r6z0c676k5sxs33mrd"; depends=[Rcpp]; }; - PerFit = derive2 { name="PerFit"; version="1.4.1"; sha256="0mzd9yrgsswxlhljlk8nxi0dhy3k4a9jax9w9c9s29j4m7z9jf01"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; + Peptides = derive2 { name="Peptides"; version="2.4"; sha256="1i5p0z4zhis4p1czwz3cryr64lys4dp2fddnmmasgspl8fyz8p05"; depends=[Rcpp]; }; + PerFit = derive2 { name="PerFit"; version="1.4.2"; sha256="147f2fbcjb0639h0bmiikli05r3jlbp559hj9v9af3s09l1l6v8y"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; }; Perc = derive2 { name="Perc"; version="0.1.2"; sha256="0p6l4b536jjz4lmgsdrxqsh77lx4vkb6hbyd6vhbc102m5x3b1yc"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; }; @@ -2597,24 +2608,24 @@ in with self; { PeriodicTable = derive2 { name="PeriodicTable"; version="0.1.2"; sha256="133rwbvapk99dmh3vi8p7sa81d7hjmy0g4a5hcmwr3mdq8jzgwrj"; depends=[]; }; PermAlgo = derive2 { name="PermAlgo"; version="1.1"; sha256="16fhdgr4nza9yknsbwiv8pgljfwp8hhva0crs4dbfd0w4j97n5fp"; depends=[]; }; PersomicsArray = derive2 { name="PersomicsArray"; version="1.0"; sha256="1d5gxd65b01m13rgbdhk6w3l43vqcbdk0s1pbgc8h6cnipj55z0i"; depends=[jpeg raster stringr tiff]; }; + PetfindeR = derive2 { name="PetfindeR"; version="1.1.3"; sha256="1dkiawadfsb8akssnhddd64bn6dq6r95c7j4g3mkbq6fs9106h8x"; depends=[dplyr httr jsonlite plyr]; }; PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; Phase123 = derive2 { name="Phase123"; version="1.5"; sha256="05yvzx0sf6dq47nr5bk1kd2icndf20z39y9fj90zqdm3ay2hi586"; depends=[Rcpp RcppArmadillo survival]; }; PhaseType = derive2 { name="PhaseType"; version="0.1.3"; sha256="092dqyqfaxj8qpwxcjb5cayhnq597rfjz1xb93ps4nrczycqs0l6"; depends=[coda ggplot2 reshape]; }; - PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.2.0"; sha256="1vnissx2p10w2w435vr2jqw50cs5518l1gpq4pkyyxckcrd300w9"; depends=[data_table dplyr ggplot2 mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; }; + PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.2.2"; sha256="1mr4jq44ijdiabp3simfjh9zcl9anp1w0dili6w5sq8dzgids8gj"; depends=[data_table dplyr ggplot2 mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; }; Phxnlme = derive2 { name="Phxnlme"; version="1.0.0"; sha256="0h9mi8p95rp1s8xsdv38j9fpy2cy9zvjnldjmnj0n469kimp2782"; depends=[ggplot2 gridExtra lattice manipulate testthat]; }; PhyInformR = derive2 { name="PhyInformR"; version="1.0"; sha256="10d720ww909b1xmdrms554pnn0757nzppnrniar4n157mh0qw7ms"; depends=[ape doParallel foreach geiger ggplot2 gplots gridExtra hexbin iterators PBSmodelling phytools RColorBrewer]; }; - PhySortR = derive2 { name="PhySortR"; version="1.0.7"; sha256="1xpxkd2bf3xdsfwa0bzkppr6y7p6v7s4iy0x0m8fiwj93n9jh0pz"; depends=[ape phytools]; }; PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; }; PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.1.0"; sha256="0ji78zx0gp1nd5assrmwxdkxryfjijnn9g34w2g2qv32s1fdj6ak"; depends=[ape capushe foreach glmnet grplasso LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; PhysActBedRest = derive2 { name="PhysActBedRest"; version="1.0"; sha256="0gmqh700cf6aiagb45iyyf85pgp3b86fx7fbv9lrsm4mda0r8h75"; depends=[chron lubridate stringr]; }; - PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.1-1"; sha256="1aqyip7psf3pdrxkpidfldkk9naihvnc7s3n6w6vvr9h1l5mpmvc"; depends=[]; }; - PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.2"; sha256="04l1id872mlgpid746l8dz2wdcjxh79cqw835gsph6ngxg0g8qp6"; depends=[Rcpp RcppArmadillo]; }; + PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.2-2"; sha256="14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln"; depends=[]; }; + PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.4"; sha256="023hq0gg1vi0j3yf8p5lisgs8wfp5qwyd4akxxzx7wad2985gxb3"; depends=[Rcpp RcppArmadillo]; }; Pijavski = derive2 { name="Pijavski"; version="1.0"; sha256="1027lmmk17br9zxah980j6l3k2p92065bwigw6gpy9g0g5jjl4f1"; depends=[Rcpp]; }; PivotalR = derive2 { name="PivotalR"; version="0.1.18.3"; sha256="14l7y57zmfr7h4bq01j83am2plxx320kkhbsh0x2ypif9dni4rf2"; depends=[Matrix]; }; PlackettLuce = derive2 { name="PlackettLuce"; version="0.2-3"; sha256="1w2ihclnh3x83ip4hh95bchv5j832cqy6n140q5q1dbfz6fy1bxv"; depends=[igraph MASS Matrix partykit psychotools psychotree qvcalc rARPACK sandwich]; }; Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; }; - PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.6.10"; sha256="1dqc6k7mq9k6g9gndgjm6cf61mgl0liy4qwpzragbhq6lym8hw6w"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; Plasmidprofiler = derive2 { name="Plasmidprofiler"; version="0.1.6"; sha256="10m3knmz0596rm30ncyfprar6l42bjm7r34n4pjz1biqmiz6yz6k"; depends=[ape dplyr gdata ggdendro ggplot2 gridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr]; }; Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; }; PlayerRatings = derive2 { name="PlayerRatings"; version="1.0-1"; sha256="0fdk70vfxgmf2hy6j0djbksi5znvilsi74rrbqd0lfhi841j15qj"; depends=[]; }; @@ -2633,17 +2644,17 @@ in with self; { PoloniexR = derive2 { name="PoloniexR"; version="0.0.1"; sha256="1qik272z5lmzv9k1kfr5v0m8sydbdhbrc732n1zpwnqc1spfqb20"; depends=[anytime digest httr jsonlite RApiDatetime xts zoo]; }; PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; PolyTrend = derive2 { name="PolyTrend"; version="1.2"; sha256="17n6phkzgaqrlzs8x1l5smnij1gxfklr0zj9pqfy5n8xqnpwssm5"; depends=[]; }; - Polychrome = derive2 { name="Polychrome"; version="1.1.0"; sha256="1a0ifbvkw85sxwc8zjj8hy88avmqyjsfxk2cd16qsp0p9wfn872y"; depends=[colorspace scatterplot3d]; }; - PolynomF = derive2 { name="PolynomF"; version="1.0-1"; sha256="0sr5v43hp1ydy2230vm3mrg4pnnv7nivhnp3zni9svc8g0bd8z8p"; depends=[]; }; + Polychrome = derive2 { name="Polychrome"; version="1.1.1"; sha256="100hxrzgyxxnwm2y2f0y740x9qk7dhxnrvya6hyg3kgg0mmr3nq3"; depends=[colorspace scatterplot3d]; }; + PolynomF = derive2 { name="PolynomF"; version="1.0-2"; sha256="0zczryvjykr7yifb5isvys2mzgi0yj92j3p3xixn2qzzq9cr0h9a"; depends=[]; }; Pomic = derive2 { name="Pomic"; version="1.0.4"; sha256="0xy5fgimbgqqac3n7akhwyvnrvd9fpvx9h8nk4spxrxc8x0km1w7"; depends=[]; }; PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; PopED = derive2 { name="PopED"; version="0.3.2"; sha256="1lvzqpij4dqbw144ya25bhlx96mwaxz932r0bl3jsx1si9ijb8xz"; depends=[codetools dplyr ggplot2 MASS mvtnorm]; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.0.0"; sha256="0z4g7ll3dk9mgawnn7k0ysgj8w55adivc4zcrr898x399g7vnfx4"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; - PopGenome = derive2 { name="PopGenome"; version="2.2.4"; sha256="1l0c8p1vpj4zbbgjcnjzdiryfzfl6ad070sp54q83k7iaracmqzd"; depends=[ff]; }; + PopGenome = derive2 { name="PopGenome"; version="2.6.1"; sha256="074vfyfhlqnc38jb0shwp5a4ikvb4jflfghmg88h3a2za3nj4abs"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.2.1"; sha256="09az5wa0zai6axhvrljqdjn74nb7jikqwjqy8f570qxb6jbgfgay"; depends=[BGLR qtl rrBLUP]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; - PortfolioAnalytics = derive2 { name="PortfolioAnalytics"; version="1.0.3636"; sha256="0xva3ff8lz05f1jvx8hgn8rpgr658fjhf3xyh9ga1r7dii13ld50"; depends=[foreach PerformanceAnalytics xts zoo]; }; + PortfolioAnalytics = derive2 { name="PortfolioAnalytics"; version="1.1.0"; sha256="1jy89brrdw8ilbi9pjxxq5yhqw85ik4kzdd2sa60crjlhvipx0ff"; depends=[foreach PerformanceAnalytics xts zoo]; }; PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.4"; sha256="1sfgkwyn7vfy3rqb1cglywiv5xmyxhzvj38vgrvfq5jf3hvzsg21"; depends=[PortfolioEffectHFT rJava]; }; PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; }; PortfolioOptim = derive2 { name="PortfolioOptim"; version="1.0.3"; sha256="1s9msqjxqxqafhncc3hi5prhzl5cj0incd5rc9fxc23l5l4n9xjx"; depends=[Rglpk]; }; @@ -2652,19 +2663,20 @@ in with self; { Power2Stage = derive2 { name="Power2Stage"; version="0.5-1"; sha256="155w5yp0pdq4g3638m0c54i81lfk0g0f339hzbxpkxhs8ds7g2zv"; depends=[cubature mvtnorm PowerTOST]; }; PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.4-7"; sha256="02k6jn5dw70518g55bchax0l5gkci827lqwwyxwnn6rzs3mx4ybs"; depends=[cubature mvtnorm TeachingDemos]; }; - PowerUpR = derive2 { name="PowerUpR"; version="0.2.3"; sha256="046p4mrw50k1a0m672i2zx5vxfpyggiazp95qz8kx6bnq472ixp2"; depends=[]; }; - PracTools = derive2 { name="PracTools"; version="0.8"; sha256="0hmdsm1ya6fw0f2fv4b85bkr35vlqmjf1sd9jmw1d4izpifv187h"; depends=[]; }; + PowerUpR = derive2 { name="PowerUpR"; version="1.0.0"; sha256="04lc6xjwwy9wxd7pg1wm5vg0bq3194cp0r7i72da7c10b31frdh1"; depends=[]; }; + PracTools = derive2 { name="PracTools"; version="0.9"; sha256="0yra18is5pdwzw3vc5sk53g89n5rz1hpn8zlvcx541nxr43i69sd"; depends=[]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; - PreProcess = derive2 { name="PreProcess"; version="3.1.4"; sha256="0zvy7wx9wfsdcvnjdr1angh0shqwhlm48byc0ymciqlx6xagaw0b"; depends=[oompaBase]; }; + PreProcess = derive2 { name="PreProcess"; version="3.1.5"; sha256="049gdrp4kwvsid2bn12f61557qgpfv8cpzrd1b4ml47jpw8w0xdk"; depends=[oompaBase]; }; PreciseSums = derive2 { name="PreciseSums"; version="0.3"; sha256="02w0pa9dd196sg6zg9w2fp4b0k6wibbw9rbvasr3aphh98kbd6ch"; depends=[]; }; PredPsych = derive2 { name="PredPsych"; version="0.3"; sha256="0bqc2vl32z9wzby7ncrab742cajy4w5kq7wv2gh2jjqdnv9nkia7"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; PrevMap = derive2 { name="PrevMap"; version="1.4.1"; sha256="1hmvfk5zpflwncaiy2rr0jr2gr2gk66na6ks82b6dfgk8xdc8xmk"; depends=[geoR Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; + PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; ProDenICA = derive2 { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; - ProFit = derive2 { name="ProFit"; version="1.1.1"; sha256="0krnxdf9dddry4a5k1dag43va7lii1ykk0857kk1dfnl56sm3l51"; depends=[celestial fftw FITSio LaplacesDemon magicaxis R2Cuba RColorBrewer Rcpp]; }; + ProFit = derive2 { name="ProFit"; version="1.1.2"; sha256="0z8prfmjx9zs7cqd316pc5iy3mg9vldcl12d3mk8llpvynn86ja3"; depends=[celestial cubature fftw FITSio LaplacesDemon magicaxis RColorBrewer Rcpp]; }; ProFound = derive2 { name="ProFound"; version="1.0.1"; sha256="0ym8ggzm0b8zpfsq8xjjnwa09826gssaqhrqjyq88pwbhzh0y4pl"; depends=[celestial data_table FITSio magicaxis]; }; ProNet = derive2 { name="ProNet"; version="1.0.0"; sha256="10r0gcxv0djrw99nd6a1jrnwvqmidw10ll645gvkp8l39li0107n"; depends=[igraph linkcomm MCL Rcpp]; }; ProTrackR = derive2 { name="ProTrackR"; version="0.3.5"; sha256="19ilj03w5jpc1hw5avyb780iy3rdbby3kliym0si2zv6gyi9k541"; depends=[audio lattice signal tuneR XML]; }; @@ -2674,15 +2686,14 @@ in with self; { ProfessR = derive2 { name="ProfessR"; version="2.3-5"; sha256="0q04mjfr2g2l2md8c7nampivg6z4wjv6nfcq13b94sgixak0ww6f"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; ProgGUIinR = derive2 { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; }; - ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.8"; sha256="0kagahw30m0drlda75hgwbpp7cqrxyf1512ar56qlgm8z73hab3n"; depends=[]; }; - ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.0.6"; sha256="0hx8v18m0wymbjjccy8sm34sqchs9gsf6piyhbs50nm00dqiamv6"; depends=[deldir GeneralizedUmatrix geometry ggplot2 Rcpp shiny shinyjs vegan]; }; + ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.8.2"; sha256="1yxfx7vi1vvwlk5wzjlkv7q591hq6a5jdv4brzb6v670fmw21kvd"; depends=[]; }; + ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.0.7"; sha256="1nammbm9hjsgb46cqvhwx45lfaaxw13d12q43fgwk411a91rblm1"; depends=[deldir GeneralizedUmatrix geometry ggplot2 Rcpp shiny shinyjs vegan]; }; ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.0"; sha256="1baf4v9c2pqqmlgxs1jf7fhwqbsw0l1g7rdiia21acxix2j3b7wj"; depends=[]; }; PropCIs = derive2 { name="PropCIs"; version="0.3-0"; sha256="1ywzi88igzaj2wnbrqa08cy7pw886z2m0x3j7rk45rin9mgpfdfd"; depends=[]; }; PropClust = derive2 { name="PropClust"; version="1.4-3"; sha256="0k1wn62vlrddzhknyjpizpqxzrgl38frncql3mrlwakkn0kh8l5z"; depends=[dynamicTreeCut flashClust]; }; PropScrRand = derive2 { name="PropScrRand"; version="1.1"; sha256="0cj62dzg4zm8d1g8h7qmviiwm93cwplppbi0p674fmmf1wy84v9s"; depends=[]; }; ProteinDescriptors = derive2 { name="ProteinDescriptors"; version="0.1.0"; sha256="1ydm8aym1wwxmfh4krh84nmj1wkgb574igg1sywl58l3qlnhya0l"; depends=[]; }; Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; - PsiHat = derive2 { name="PsiHat"; version="1.0"; sha256="0an71x75j6ih55alxp7kfwi0qf4z3y5bwswrjk01z2w4b9glacqh"; depends=[qvalue]; }; Pstat = derive2 { name="Pstat"; version="1.2"; sha256="17bqkaf9590jhiaamaafmvkqmy2aqkcfqhk8m4w35g58j48yk4yx"; depends=[]; }; PsumtSim = derive2 { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; }; PsyControl = derive2 { name="PsyControl"; version="1.0.0.0"; sha256="1c5ml6s3c8kzf7p0mig84bmq40b0491ah713bm6jpy2s3nwnmafs"; depends=[irtoys ltm]; }; @@ -2692,6 +2703,7 @@ in with self; { Publish = derive2 { name="Publish"; version="2018.04.17"; sha256="0dbcql2mi2qsxzcgcqa58yqynfq1800fa06ikyay2dm6gdyf0apq"; depends=[data_table lava multcomp prodlim survival]; }; PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; }; PwrGSD = derive2 { name="PwrGSD"; version="2.3"; sha256="1iisib4bnb3fp0nwxnal13fgd0fs1vckchr4cj716k72jh6k7slm"; depends=[survival]; }; + PxWebApiData = derive2 { name="PxWebApiData"; version="0.1.0"; sha256="0rd82kmpija4kkyl283b1z61q0abasimz4z7rki3kvfr0afa44j3"; depends=[httr jsonlite rjstat]; }; PythonInR = derive2 { name="PythonInR"; version="0.1-4"; sha256="0krr5k0y9rggzq8f74nc6pyf47g8va1lvva31vc774hbb0rmr7gf"; depends=[pack R6]; }; QCA = derive2 { name="QCA"; version="3.2"; sha256="1bjsc24b3g7xdb1fi3f4y1297g185gasl3xsgqxibck2zjlagl11"; depends=[fastdigest shiny venn]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; @@ -2703,7 +2715,7 @@ in with self; { QCSimulator = derive2 { name="QCSimulator"; version="0.0.1"; sha256="1ff7xagnzibhrwrmkqyky4ik3kx7rrlajrs1ypm210sl1d73jwvs"; depends=[ggplot2]; }; QFASA = derive2 { name="QFASA"; version="1.0.2"; sha256="1gfclbalcfcfmb8bq7rp8kpnaqblai9y7n7n7zh4a3qmia5vrz2b"; depends=[Rsolnp]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; - QGglmm = derive2 { name="QGglmm"; version="0.6.0"; sha256="1n53qba6y1hcxg1ry8bp41mgcycckli9q2syippvd7xdlq3srhqd"; depends=[mvtnorm R2Cuba]; }; + QGglmm = derive2 { name="QGglmm"; version="0.7.1"; sha256="0hgs99vfan2nsz5i98an5z65lyw3a3ddhwzl0ffvlngw7gnshzqd"; depends=[cubature]; }; QICD = derive2 { name="QICD"; version="1.2.0"; sha256="0ppyl978y7md2n9m4kwhbrgdr5i3df0yw124x84f53w4acipgz5q"; depends=[]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; QPBoot = derive2 { name="QPBoot"; version="0.2"; sha256="1nxmxayfq2xcjzix080mkc8y52wl3vs0rcwdl8lmhwfawjb4pap5"; depends=[abind quantspec rugarch]; }; @@ -2714,11 +2726,12 @@ in with self; { QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; }; QRegVCM = derive2 { name="QRegVCM"; version="1.2"; sha256="0fcydkf6r2qxd59ylr8vn76bkxks91v58gfzvq3rjd5mqf9vsaaq"; depends=[quantreg SparseM truncSP]; }; QSARdata = derive2 { name="QSARdata"; version="1.3"; sha256="0dhldnh0jzzb4assycc0l14s45ymvha48w04jbnr34lrwgr9krh4"; depends=[]; }; + QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.0"; sha256="1yk4sl4hlapcjajwq85jwcmpli4myib9862sz7ary676giq1vp18"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp stringr]; }; + QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="1.0"; sha256="05v93p3s9kncyzhiqgmd79h6b61xrr2k9vpgv9hjj0pkhsyanqc1"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp shiny stringr]; }; QTLRel = derive2 { name="QTLRel"; version="1.0"; sha256="0hlnh04w45imf0f7rm9pg1whlps5zxh00qvvn81hip16bv48cw79"; depends=[gdata lattice]; }; QUIC = derive2 { name="QUIC"; version="1.1"; sha256="021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"; depends=[]; }; QVM = derive2 { name="QVM"; version="0.1.1"; sha256="0dnr4h4084n505vrxfrx3czrkqdbna8s4fxpwr5czfilbfbxhpar"; depends=[gWidgets IMPACT ltm multilevel mvtnorm nlme pander psych]; }; QZ = derive2 { name="QZ"; version="0.1-6"; sha256="1vgqwv3rbnmz2sgbmbivgnxcwy5dzgk6ivqskdnqkil4f10zflmi"; depends=[Matrix]; }; - QoLR = derive2 { name="QoLR"; version="1.0.3"; sha256="1z3wicybqsyczgjjd84g95bjxw80l5y8b68ayp300bm5jd4f2pha"; depends=[survival zoo]; }; Qtools = derive2 { name="Qtools"; version="1.3"; sha256="1vbjydacgczjlsf8b8id25n3k0cq74i43nsvax22k8hbvj4g0b94"; depends=[boot MASS mice quantreg]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; @@ -2729,13 +2742,14 @@ in with self; { QuantifQuantile = derive2 { name="QuantifQuantile"; version="2.2"; sha256="01bdz8a6nhjil6n2z62x5g41v3d6md5v16g0ladsl5zc8raivqdq"; depends=[rgl]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; }; + QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-10-2"; sha256="1mr43vys9l1n859lzlcakjrvjllybgrwl0p8mc28h7m87yjkj670"; depends=[edgeR mgcv pracma]; }; R_cache = derive2 { name="R.cache"; version="0.13.0"; sha256="1hf5cb7xvnca5zlh9245b5g62sgsaxwdhiv7x59yld37cydakm6k"; depends=[digest R_methodsS3 R_oo R_utils]; }; R_devices = derive2 { name="R.devices"; version="2.15.1"; sha256="09gmzb87n1ybqwyp4jdpih3w3s7nqkr4hd1qhcqr57kp2pj9jp9x"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; R_filesets = derive2 { name="R.filesets"; version="2.12.1"; sha256="0grd3wk5xh7jgp10m78knj0snqyxqv7yir6wvz2wq5rabvcn9mab"; depends=[digest future_apply R_cache R_methodsS3 R_oo R_utils]; }; R_huge = derive2 { name="R.huge"; version="0.9.0"; sha256="13p558qalv60pgr24nsm6mi92ryj65rsbqa6pgdwy0snjqx12bgi"; depends=[R_methodsS3 R_oo R_utils]; }; R_matlab = derive2 { name="R.matlab"; version="3.6.1"; sha256="013qi3iikikgib23cqg74vpp2ymsbw1zd6zny7m1km2js6gmfchh"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive2 { name="R.methodsS3"; version="1.7.1"; sha256="11z6v2i7jl647wxi9p5z66yvfnnqv6s7fxqmz7w2gkb6j8wl1f24"; depends=[]; }; - R_oo = derive2 { name="R.oo"; version="1.21.0"; sha256="0723gxjazgqq7v3lwnl7axw3brzcnizvhbd71ijkkv8mz31fwp34"; depends=[R_methodsS3]; }; + R_oo = derive2 { name="R.oo"; version="1.22.0"; sha256="0k6xwy93fpb2p7bs76lzk52br9rv5xnd9524xj8qyazv1132x1n0"; depends=[R_methodsS3]; }; R_rsp = derive2 { name="R.rsp"; version="0.42.0"; sha256="1zcq0hzi0j7fvj2rs796a1i120wbr0387vck17rrd644awwbsbm0"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; R_utils = derive2 { name="R.utils"; version="2.6.0"; sha256="03j7hrs03kyj9qrjxyp5kqv4lpqqpk6xwbkzx6j15d8928yrjr2x"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; @@ -2745,7 +2759,6 @@ in with self; { R2DGC = derive2 { name="R2DGC"; version="1.0.3"; sha256="0f84fmpf3m2s2p6bllvjs8rgnhwjy54adblv02dq8gakwvb4j2aw"; depends=[]; }; R2DT = derive2 { name="R2DT"; version="0.1"; sha256="0zydrdx6xdlacq6s01jwv4rv6ydmbwmiif40rilp8h76bim0kdbr"; depends=[data_table devFunc plyr]; }; R2G2 = derive2 { name="R2G2"; version="1.0-2"; sha256="05d5vybvsi4pyr099916nk1l8sqszs9gaj2vhsx1jxxks8981na7"; depends=[]; }; - R2GUESS = derive2 { name="R2GUESS"; version="1.7"; sha256="07w54r5r9v7pa8aklmwbwdcc57j3a3b46b1a7mwmzcl11mcfwdph"; depends=[fields MCMCpack mixOmics mvtnorm snowfall]; }; R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-5"; sha256="09p8xrxhcf6biy1mffv31p2hlr19s51f3n67az52f3xv5lyp9wm8"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc rbugs texreg]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2"; sha256="1cxr93g0fkdv3lqdh63l2gcp7qn3q42pm1r6nzf35550k9ahkhnv"; depends=[boot coda]; }; @@ -2759,12 +2772,11 @@ in with self; { R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.5"; sha256="1wd1yqbs8m4zqvdm6x7mrcyk5b5pr4azm3r49nrilg8fnr2bk9rz"; depends=[bitops RCurl RJSONIO]; }; R4dfp = derive2 { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; }; R6 = derive2 { name="R6"; version="2.2.2"; sha256="13xfdr19ca7ymisidsanm6w7hsk3qmy5l8c0mlz3nk48f7s5cxq8"; depends=[]; }; - RAC = derive2 { name="RAC"; version="1.1.1"; sha256="0ybyjjpw8f4wbdhkhbnjg8wy82ibxsywyjrsi406l2knnkx0mvmg"; depends=[matrixStats plotrix rstudioapi]; }; + RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; }; RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; }; - RADami = derive2 { name="RADami"; version="1.1-2"; sha256="1k4g58r64i19j8wj3d202283bnwaxf19l7ckiz29dlw4zidx6mvz"; depends=[ape Biostrings geiger hierfstat IRanges phangorn]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; RAHRS = derive2 { name="RAHRS"; version="1.0.2"; sha256="0s7vkmyc3yh62m2xbsvajgvi9xdw5x4irnp7rcllhqa7z9nj50c9"; depends=[pracma RSpincalc]; }; - RAM = derive2 { name="RAM"; version="1.2.1.3"; sha256="1p6rqqbp5q3pqy9m6npml52nkfh8pd4kc245kb22qjslbvl3rrkn"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; + RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; RAMP = derive2 { name="RAMP"; version="2.0.1"; sha256="1n8h58j6v1xs6adrr4w4ha7pn1q2fh14dyg7zgpp2smv0j2b33dr"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; @@ -2774,12 +2786,11 @@ in with self; { RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; RAPTOR = derive2 { name="RAPTOR"; version="1.0.0"; sha256="1i3p3qa56ghcwh69vv3gnxnw13cbd99ms654j2bqr7g9qb7nl8vj"; depends=[mgcv]; }; RATest = derive2 { name="RATest"; version="0.1.2"; sha256="0cxb82kzmywgslf6hfjl6v015s64jh483bzxnhph420mcp3ysbfk"; depends=[ggplot2 gridExtra quantreg]; }; - RAdwords = derive2 { name="RAdwords"; version="0.1.16"; sha256="1a7r600s7r4pp0wwcsgyzkc6v7nywbsv3s0q118wmx2ig5rsyihw"; depends=[RCurl rjson]; }; + RAdwords = derive2 { name="RAdwords"; version="0.1.17"; sha256="1w6fkg7a5dp6s80fzcgs65f0d7qp43l4yawh00ly0b750f2fnxvp"; depends=[RCurl rjson]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.3"; sha256="0g5sdq6sl7cvsj9fgqhcdxjkrfi53078r0mbzvf69cvz38y5x3sm"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="2.0.2"; sha256="18zmqqh4rnbnaiwi60jfp4xi8fp63ydr3jk9w4ijmy6s4hkpp75g"; depends=[]; }; RArcInfo = derive2 { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; }; - RAtmosphere = derive2 { name="RAtmosphere"; version="1.1"; sha256="0mk43bq28hlrjwaycsxca458k8xf00q58czgc17d8yx3kz17a5i0"; depends=[]; }; RBMRB = derive2 { name="RBMRB"; version="2.1.2"; sha256="1m6n2kfg83mlfy22k75hy5zjf547v0rdwk9w6l04yfyrr6himbr8"; depends=[data_table ggplot2 httr plotly rjson]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RBesT = derive2 { name="RBesT"; version="1.3-3"; sha256="0pink9jza2pfm1vqmzgp0pcyg9a4ak4c9igcxj692np82mv8hi0j"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 lme4 mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; @@ -2794,12 +2805,13 @@ in with self; { RClickhouse = derive2 { name="RClickhouse"; version="0.4.0"; sha256="0lb0sgs2f78y2z5ip2wqml88vykrwkdhn3i36y9hyrm34ackis6h"; depends=[DBI dbplyr dplyr Rcpp yaml]; }; RClimMAWGEN = derive2 { name="RClimMAWGEN"; version="1.1"; sha256="0icy560llfd10mxlq0xmc6lbg6a030za9sygw1rpz8sk5j0lvb84"; depends=[climdex_pcic RMAWGEN]; }; RClone = derive2 { name="RClone"; version="1.0.2"; sha256="1kv02acj0mk5102wvmdnxnkb7qig3jb9amcs4k2r26fpa4hyfa7f"; depends=[]; }; + RColetum = derive2 { name="RColetum"; version="0.1.2"; sha256="1c5p3g2bcijp3pgq5jyh1w5r6ni0rnw5kqdz72misx4mapjf7apl"; depends=[dplyr httr jsonlite]; }; RColorBrewer = derive2 { name="RColorBrewer"; version="1.1-2"; sha256="1pfcl8z1pnsssfaaz9dvdckyfnnc6rcq56dhislbf571hhg7isgk"; depends=[]; }; RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCrypto = derive2 { name="RCrypto"; version="0.1.0"; sha256="1lw7hq5ks36fixk0g3gcy4nw21ygwc14jq840hnhyds4glywfpvm"; depends=[dplyr httr jsonlite]; }; RCurl = derive2 { name="RCurl"; version="1.95-4.10"; sha256="02pyh6kvsfbwgccf8v77aa3ky21kps1rpgaii20wmridrgqj90vg"; depends=[bitops]; }; - RCzechia = derive2 { name="RCzechia"; version="1.2.3"; sha256="18x1561l5hnaayvv8mca8gncqfgn4bbqx69gkb0jk3wa6s11y2qk"; depends=[httr]; }; + RCzechia = derive2 { name="RCzechia"; version="1.2.6"; sha256="03zp8y76084l2zjzf9bbfhig7gi01a21gnjfiajzi8q851nfgl29"; depends=[httr lwgeom magrittr sf]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="0.9-9"; sha256="0amlr7mxp7175a7rd3jw7lhyvp3lnr01y81l27sl148sfb85zar6"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDS = derive2 { name="RDS"; version="0.8-1"; sha256="18xn0ci35xs2myzj8rny6pp08cn8ljl3l4fdgaqp05fphgb5fh8j"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales]; }; @@ -2811,7 +2823,7 @@ in with self; { RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; }; REAT = derive2 { name="REAT"; version="2.0.0"; sha256="0al0502h1iyd03c4hsy35nxz3nbvvfshi5jxxvxlh1x4bxvpy1vs"; depends=[]; }; REBayes = derive2 { name="REBayes"; version="1.3"; sha256="0byd7587vddffplzp8kc2aakab61pck2r25rajxfn0rsvl5yvxyx"; depends=[Matrix reliaR Rmosek]; }; - RECA = derive2 { name="RECA"; version="1.3"; sha256="1v9ff2inxwpq91pjl6g9bpl9nmlyryp030g6abydikkhkcq3n74b"; depends=[]; }; + RECA = derive2 { name="RECA"; version="1.6"; sha256="0bb6phd7f8rrz7754bn6sp53jrvcl6xg6lkj330945xwia1dhpxi"; depends=[]; }; REDCapR = derive2 { name="REDCapR"; version="0.9.8"; sha256="14psw0sxlyig4nf968n997djwf80hgy5ia2g0bp8rdpn8lrj01g6"; depends=[data_table dplyr httr magrittr readr tibble tidyr]; }; REEMtree = derive2 { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; @@ -2823,14 +2835,14 @@ in with self; { RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; }; - REddyProc = derive2 { name="REddyProc"; version="1.1.3"; sha256="1ixc3bdsqy1mavzpbgw9sxlbnkrmy7sbb7wizh5133gi4p2f2bdh"; depends=[dplyr logitnorm mlegp purrr Rcpp rlang tibble]; }; + REddyProc = derive2 { name="REddyProc"; version="1.1.5"; sha256="1f0r8pdyghqbgrncar83pj935crf80yqms48sj9yf1jal5px068b"; depends=[dplyr mlegp purrr Rcpp rlang tibble]; }; + REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; REndo = derive2 { name="REndo"; version="1.3"; sha256="02hk2azmhdbr28vf8fglljiccij0284ypjzkk9yh23rw7pnbdk4g"; depends=[AER corpcor data_table e1071 gmm lme4 lmtest Matrix mvtnorm optimx plyr sandwich]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="1.6"; sha256="1hl2crg7jl266zac41xvx151h7kl52346wnlvd8hba64s4s4apay"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; RFgroove = derive2 { name="RFgroove"; version="1.1"; sha256="1ank7jvmn83w0xzylf7i0fjb60mbrzzydspksfzcy16rkl6f5dvb"; depends=[fda randomForest wmtsa]; }; RFinanceYJ = derive2 { name="RFinanceYJ"; version="0.3.1"; sha256="0qhmzsch7c2p0zckjkspsajzh8m10cf75ixjlgd0nj8rm41fngm3"; depends=[XML xts]; }; - RFinfer = derive2 { name="RFinfer"; version="0.2.0"; sha256="1cgdrg7gm8hdaaycipn8wjx7s4652jyy664n1my9qynmc56qib4n"; depends=[Matrix party pbapply randomForest]; }; RFmarkerDetector = derive2 { name="RFmarkerDetector"; version="1.0.1"; sha256="1zd0sbcji620pka5600ilj4bq9gzdnk5kf82qfd5k5dcx7q9x7rk"; depends=[AUCRF ggplot2 randomForest ROCR UsingR WilcoxCV]; }; RForcecom = derive2 { name="RForcecom"; version="1.1"; sha256="1ch1pwpnqagzb9n4qbgr804bmnz819kp36r5a4zhijmq8xpv3qr2"; depends=[httr plyr RCurl XML]; }; RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; @@ -2840,48 +2852,49 @@ in with self; { RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; }; RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2"; sha256="1w28yfzk3ilbz1r9fsc76cigyrnzzhsfm3a81ff8g26za7cb8vjp"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; - RGF = derive2 { name="RGF"; version="1.0.2"; sha256="06qvilx9z659q0kad5h1r6mdf4vc8lmr8bzw5nrjsjpb92v5crh5"; depends=[Matrix R6 reticulate]; }; + RGF = derive2 { name="RGF"; version="1.0.3"; sha256="00s360kba9w58bzyhikh487gymryq0g62zhyr3zd2vfm4x0rl0ms"; depends=[Matrix R6 reticulate]; }; RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; RGenetics = derive2 { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; }; RGeode = derive2 { name="RGeode"; version="0.1.0"; sha256="1g8ha6zg4pvi8qimiihsa6rjfdcyj0q526l44jajjbqczmwg59lv"; depends=[MASS Rcpp]; }; - RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.1"; sha256="1049fyxl00izw92rm508p90asjp0agmv38b00yfbmasfzsp1r00s"; depends=[httr lubridate]; }; RGoogleAnalyticsPremium = derive2 { name="RGoogleAnalyticsPremium"; version="0.1.1"; sha256="0d22pdd5kvnrspikfb66ny07pgx96rvykr0zi78rwn6g1symdb4q"; depends=[httr jsonlite lubridate]; }; RGoogleFit = derive2 { name="RGoogleFit"; version="0.3.1"; sha256="0g4r5vb9zv6mqym1mh028ic9hkmlpklrhq4ks5sys7y60ps893k1"; depends=[bit64 httr jsonlite RCurl]; }; RGraphics = derive2 { name="RGraphics"; version="2.0-14"; sha256="0bv95g17pvpq3nji0akphdaznh9k85hf5z78qypxwfqr76brxd05"; depends=[ggplot2 lattice]; }; - RGreenplum = derive2 { name="RGreenplum"; version="0.1.0"; sha256="19wb85npy27r011yfp90y1dvl8qk2yh2qks8zg207nac0vngz4y1"; depends=[DBI RPostgres]; }; - RGtk2 = derive2 { name="RGtk2"; version="2.20.34"; sha256="1yhdcd7f987bdd2y08dcx95i1hbfakgd8v1c606jxwr2dclyhx70"; depends=[]; }; + RGreenplum = derive2 { name="RGreenplum"; version="0.1.2"; sha256="1mc0zmmnb9306j2cjn1j71bp35ri8p35rw6rlmrqyxgpvlw09r3d"; depends=[DBI RPostgres]; }; + RGtk2 = derive2 { name="RGtk2"; version="2.20.35"; sha256="17nxxhkk9jvcwfajbhs5kyrx00lx1irggfbq3l2gp28dvb1cn6z9"; depends=[]; }; RGtk2Extras = derive2 { name="RGtk2Extras"; version="0.6.1"; sha256="19gjz2bk9dix06wrmlnq02yj1ly8pzhvr0riz9b08vbzlsv9gnk2"; depends=[RGtk2]; }; RH2 = derive2 { name="RH2"; version="0.2.4"; sha256="14590l3a2znd56nrq1zfbfv7fgii4672qy1xfwiynrh3mjad217k"; depends=[chron rJava RJDBC]; }; - RHMS = derive2 { name="RHMS"; version="1.3"; sha256="0pp67p8i6nsh9nvxsd1m453735s0whlril8l640m888zl6a3463j"; depends=[Hmisc pso]; }; + RHMS = derive2 { name="RHMS"; version="1.4"; sha256="03ysg9lccpyvhz0qwhx90maxara24axlqb9rssvhy1djcmlbm7k7"; depends=[GGally ggplot2 Hmisc network pso]; }; RHPCBenchmark = derive2 { name="RHPCBenchmark"; version="0.1.0"; sha256="1f94d8z15ybqgc2pccsi1m6563xf26ygri6f4pwxkqjmxkxnk34y"; depends=[cluster Matrix mvtnorm]; }; RHRV = derive2 { name="RHRV"; version="4.2.3"; sha256="09rcf9da04195myh4mwva3hqcd483k0wwcn84jgbkj8a5z1zxqc6"; depends=[lomb nonlinearTseries tkrplot waveslim]; }; RHT = derive2 { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; }; RHawkes = derive2 { name="RHawkes"; version="0.0"; sha256="0qi32f6im6fsgvjs8bravc5z21557zn2d0a7i88dy0rri7czm5p7"; depends=[IHSEP]; }; RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; }; - RIA = derive2 { name="RIA"; version="1.4.0"; sha256="0whwja54mmd23sbljgvjnlgz3hlmgpdh53w04bcpgbmvcs281f5l"; depends=[nat oro_dicom oro_nifti]; }; + RIA = derive2 { name="RIA"; version="1.4.1"; sha256="0a332bdyf3jyfk6szw10h5m3vd0y4j2xjbf8yr31ra8a2xq9v45z"; depends=[nat oro_dicom oro_nifti]; }; RIFS = derive2 { name="RIFS"; version="0.1-5"; sha256="0705dhirh7bhy2yf3b1mpk3m7lggg4pwy640lvaspwaxkd6zac5w"; depends=[]; }; RISmed = derive2 { name="RISmed"; version="2.1.7"; sha256="08dmkkxsmwp9b4h2g1bbx03cijn793fsnzkmbima8x9d42vxnm1l"; depends=[]; }; RImageJROI = derive2 { name="RImageJROI"; version="0.1.1"; sha256="0a4sa60klbpl31qxxvjjbksdhvs3vwm9na1v7014v93fzxy6bjas"; depends=[spatstat]; }; RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; RInSp = derive2 { name="RInSp"; version="1.2.3"; sha256="1nm29q2gysway4r7rdjr08m0w8lh2m9akhjh7swgjwrg4f15kfmy"; depends=[]; }; RInside = derive2 { name="RInside"; version="0.2.14"; sha256="1ks9hs78s2vgdp9nfpzwifkqnh3vnaqwand51yh9r1zyjc4k9rcd"; depends=[Rcpp]; }; - RItools = derive2 { name="RItools"; version="0.1-15"; sha256="0f7g0w8bnbxryll48rnn7blgskgcdqqx9xv4fqmwcbkbasjz37va"; depends=[abind SparseM survival svd xtable]; }; + RItools = derive2 { name="RItools"; version="0.1-16"; sha256="0rs5gzlpsn8ci4s2pqaarzwd6y41vv6l4188p93x0vl2jcpd77vl"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-7.1"; sha256="1d36js3kwlghsjxfhv7rl8nvg210hxwrx8sdxrxb0inwlqsash25"; depends=[DBI rJava]; }; - RJSDMX = derive2 { name="RJSDMX"; version="1.9-3"; sha256="0myjhimx1p8ndyk60qgaw6csq58s4rxr67hgx9a5i1swsmlkwciz"; depends=[rJava zoo]; }; + RJSDMX = derive2 { name="RJSDMX"; version="1.9-3.1"; sha256="0iz4p9kl9i61sd23cqfwgwmqb48nz882mvir7p7sg5ysm0b65ijd"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-0"; sha256="1dwgyiy19sixhy6yclqcaaxswbmpq7digyjjxhy1qv0wfsvk94qi"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.5"; sha256="0p2zqbq29pfjl703wqqjzgmif7yfzz7l8rzarjf5axkdy7w7fcyl"; depends=[]; }; RJaCGH = derive2 { name="RJaCGH"; version="2.0.4"; sha256="1a8nd0w73dvxpamzi2addwr6q3rxhnnpa1girnlwbd1j1dll0bz6"; depends=[]; }; - RJafroc = derive2 { name="RJafroc"; version="1.0.1"; sha256="16a8j4bw754ci8mxfhh3c3y5g53f2hr1l1mh05xw31asqcxzafrm"; depends=[bbmle binom caTools ggplot2 mvtnorm numDeriv Rcpp stringr xlsx]; }; + RJafroc = derive2 { name="RJafroc"; version="1.0.2"; sha256="099q1ajngj147szdnnyx2yi8samc7vbjbvygafgwr20dbvp07wzg"; depends=[bbmle binom caTools ggplot2 mvtnorm numDeriv Rcpp stringr xlsx]; }; RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive2 { name="RKEAjars"; version="5.0-3"; sha256="0sm7dkdprmqh319jc43ra7qbk4qq0b2kdj9zs9mjcjz58gcrkl7s"; depends=[rJava]; }; + RKEELdata = derive2 { name="RKEELdata"; version="1.0.5"; sha256="1swzqw6j006ya48ahg6n1g8faxhqiv9v5q1zrnihpzj6868lf7y3"; depends=[]; }; + RKEELjars = derive2 { name="RKEELjars"; version="1.0.18"; sha256="0gnjpqkm0bl6wpy9fhma6gfm6ngw786jv01kkbxz072hp1swrgmx"; depends=[downloader]; }; RKlout = derive2 { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; }; RLRsim = derive2 { name="RLRsim"; version="3.1-3"; sha256="1r0xqay3jfg435dh9fqc6yy73wjffp658da194rx63vpfhshgz8w"; depends=[lme4 mgcv nlme Rcpp]; }; RLT = derive2 { name="RLT"; version="3.2.1"; sha256="14im1lvsfpl1vlhc3fmmi4vq41br48mlgqqnwnj0qqxawzzs5738"; depends=[]; }; RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; RLumModel = derive2 { name="RLumModel"; version="0.2.3"; sha256="059nqbvy13jjgzhp4n9afqkc3dbv06aml5v5ffkhpx8kcmv48xp1"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; - RLumShiny = derive2 { name="RLumShiny"; version="0.2.0"; sha256="0gchhgpdr9fb29apqni9yg72rh3hvvk7ap0869fp459hnygfcl7q"; depends=[data_table googleVis Luminescence readxl rhandsontable shiny shinydashboard]; }; - RM_weights = derive2 { name="RM.weights"; version="1.0"; sha256="0757p4174j913k8xh90zg6fpxh25b9415zap1i7ym9ab78kn0k3i"; depends=[Hmisc psychotools]; }; + RLumShiny = derive2 { name="RLumShiny"; version="0.2.1"; sha256="1iqayrz0bkyqa7c93cv9873acqjncw3z6rnwwpcgsn1wf40bd6pj"; depends=[data_table DT googleVis knitr Luminescence readxl rhandsontable shiny shinydashboard]; }; + RM_weights = derive2 { name="RM.weights"; version="2.0"; sha256="1by1z7gwwx0jjhhvsjkr7f6m7n0x43bj080ah5275cja7xqr5nm6"; depends=[Hmisc psychotools]; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; RM2006 = derive2 { name="RM2006"; version="0.1.0"; sha256="1qjvdh89jql1fl6ia76g766y1igkshlv0slqmpi0y3bn40413snb"; depends=[]; }; RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.3"; sha256="0spc0vszbxfpfp3kqdj0gnb90nvn50qwalq3mw8151b8h1swmf3l"; depends=[chron date vars]; }; @@ -2894,12 +2907,12 @@ in with self; { RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; RMallow = derive2 { name="RMallow"; version="1.0"; sha256="0prd5fc98mlxnwjhscmghw62jhq9rj5jk8qf4fnaa2a718yxf9b5"; depends=[combinat]; }; - RMariaDB = derive2 { name="RMariaDB"; version="1.0.5"; sha256="1fykcsb81pdp3v46sjphldj7nizcdp5m7a3j3p1psx0ppgg57r2d"; depends=[BH bit64 DBI hms plogr Rcpp]; }; + RMariaDB = derive2 { name="RMariaDB"; version="1.0.6"; sha256="19pjxgz9h3bb89ra6ha6mbnzyz1sagmm82qd57y0rbrsvwn0pk2i"; depends=[BH bit64 DBI hms plogr Rcpp]; }; RMark = derive2 { name="RMark"; version="2.2.4"; sha256="1vns8bl3fnk6hkwmm0wl2c6lgyv3vabsk07kkxrxrl1nzy11wj3a"; depends=[coda matrixcalc msm]; }; RMediation = derive2 { name="RMediation"; version="1.1.4"; sha256="19idqx0hwljbcfrpqwa81k7cxbd8kv77ji8yi4n4p7517jbkzma6"; depends=[e1071 lavaan MASS]; }; RMixpanel = derive2 { name="RMixpanel"; version="0.6-3"; sha256="025fg36jwq44y5m7msmjql3m0avc0hl0iw49wap0fvmzy5qn24qq"; depends=[base64enc jsonlite RCurl uuid]; }; RMongo = derive2 { name="RMongo"; version="0.0.25"; sha256="1anybw64bcipwsjc880ywzj0mxkgcj6q0aszdad6zd4zlbm444pc"; depends=[rJava]; }; - RMySQL = derive2 { name="RMySQL"; version="0.10.14"; sha256="01891kn263b02y6addgpy3gn5axg7m10bqbqv7dg9yx9k85am590"; depends=[DBI]; }; + RMySQL = derive2 { name="RMySQL"; version="0.10.15"; sha256="0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.2"; sha256="07wk0i8iz3cvkiqawxhm61g3nka8adw0zrrv60zx329gg49w0ycl"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.3.0"; sha256="15k88skwqcd0m4m502fipdl1iind4mzizqdz4h63izpqfxijl3iz"; depends=[RRNA]; }; RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; }; @@ -2908,15 +2921,15 @@ in with self; { RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; RNGforGPD = derive2 { name="RNGforGPD"; version="1.0"; sha256="11n7fl1rrgnknn61qw6dh74amhakkjk5wyg0rms554lw9cn86x2v"; depends=[corpcor Matrix mvtnorm VGAM]; }; RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; - RNOmni = derive2 { name="RNOmni"; version="0.3.0"; sha256="0gddpfv0ggbfxids42npnd0q2bkwz81v3x7h1898qyzql3dg9pwv"; depends=[abind foreach mvtnorm plyr Rcpp RcppEigen]; }; + RNOmni = derive2 { name="RNOmni"; version="0.4.0"; sha256="1dk7ydbdhz92ixgm7carsalsdah4s3mshlkri3b69r9maxakkkjr"; depends=[abind foreach mvtnorm plyr Rcpp RcppEigen]; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; - RNeXML = derive2 { name="RNeXML"; version="2.0.8"; sha256="0ikdv60nkhiv70x1crd21xd92iq2gshj6248m896v1l276513g5j"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr taxize tidyr uuid XML]; }; - RNentropy = derive2 { name="RNentropy"; version="1.2.0"; sha256="19zbjy2xrrsz674qhi6dfzppsgfdy9hp93bqj14p1w3z6smh0k8c"; depends=[]; }; + RNeXML = derive2 { name="RNeXML"; version="2.1.1"; sha256="1hnw7m5sasbs7si3aivrg984fpjpya093zzk0jjigba2gq375x4p"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr tidyr uuid XML xml2]; }; + RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; RNetCDF = derive2 { name="RNetCDF"; version="1.9-1"; sha256="0idfskxb1k8x0zzl6b0kgskdxn7zr49gw9xcj870ah9zp93iwnkx"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.0.1"; sha256="1vxzcsiapnq8101iq4w73m9k8cq2khgcsxak71x72n295r7qpsd6"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="0.7.1"; sha256="0ysr967qqid84vh6q13z045lqpi15d4pmicx59qmvfpsdpy0dz6w"; depends=[Rcpp]; }; + RNifti = derive2 { name="RNifti"; version="0.8.1"; sha256="1m1hw6mq47afa7kk36xkk3sb0yv28qwz503a7wq5c4djyp262mgh"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.6.1"; sha256="07ibpdh2z01jh9nmhs7lcz630fdq6lwal6w58np3axgcd91ch1mj"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROC632 = derive2 { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; }; @@ -2932,7 +2945,7 @@ in with self; { ROI_models_globalOptTests = derive2 { name="ROI.models.globalOptTests"; version="1.1"; sha256="0cr4iy4p590zsp47jqyrvhamc4xa9nkpnnddmwqbkgvzmzxf83ap"; depends=[globalOptTests ROI]; }; ROI_models_miplib = derive2 { name="ROI.models.miplib"; version="0.0-1"; sha256="1viqr0dqza9386m9xmfdm5riaczp4izf3bd2jk70cmdgypjj6mzg"; depends=[R_utils Rglpk ROI]; }; ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.0"; sha256="13ai7zkd00a03vyzfy1sm64cx8328xzwz5v8yw0shkdz5rchaq2d"; depends=[ROI]; }; - ROI_plugin_alabama = derive2 { name="ROI.plugin.alabama"; version="0.3-0"; sha256="0k012kv29hxw61iy1r06h70aiiqxrpmv62i4va80vmdfa2zr8zjg"; depends=[alabama ROI]; }; + ROI_plugin_alabama = derive2 { name="ROI.plugin.alabama"; version="0.3-1"; sha256="1b70qnm7s5gdcpn7y61gbwcln7r48gvp6hkmdwrvz1qvlsgaz6rk"; depends=[alabama ROI]; }; ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.4"; sha256="0fzrb4q2mcf3j4d4j8r354n6fyv2rik0ypp01l54zbm8s2r29bwb"; depends=[clpAPI Matrix ROI slam]; }; ROI_plugin_cplex = derive2 { name="ROI.plugin.cplex"; version="0.3-0"; sha256="1ipwvclrxws7nvirvns58gpakg23ldiphyl6g0akxk5hczr0lazf"; depends=[Rcplex ROI slam]; }; ROI_plugin_deoptim = derive2 { name="ROI.plugin.deoptim"; version="0.3-0"; sha256="15b5151xmwmmqgiwj4sy1agc9abk8dd2q95lva3ilkjj2j8y0zrh"; depends=[DEoptim DEoptimR ROI]; }; @@ -2941,16 +2954,17 @@ in with self; { ROI_plugin_ipop = derive2 { name="ROI.plugin.ipop"; version="0.2-5"; sha256="0xampxba8s9kigxv4xj6nb8a7a02w1aj4ansj99z8m7qg0bg2ivv"; depends=[kernlab ROI slam]; }; ROI_plugin_lpsolve = derive2 { name="ROI.plugin.lpsolve"; version="0.3-1"; sha256="0i1skxk88s8cgxbr2hl5z8h88aqchrfs3206dfb92libw3yi1vas"; depends=[lpSolveAPI ROI]; }; ROI_plugin_msbinlp = derive2 { name="ROI.plugin.msbinlp"; version="0.3-0"; sha256="00zvjqq2sj7iaymc0lrf5lmqfbqilwh8llmq841lvsmbps45w41k"; depends=[ROI slam]; }; + ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="0.3-0"; sha256="0hs64qbna8ggmn83g903kbxiyv5ghh2454xca0caf14x9lszv02j"; depends=[ROI xml2 xmlrpc2]; }; ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-0"; sha256="0niq0q08033vcm59wflilii7lciqixcpf13a93hgdaypdca8lxcw"; depends=[nloptr ROI]; }; ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="0.3-0"; sha256="0hwjgwmaclq6y5mfmykjrchpyb632qzwcvvs1nnanmrh3yhfmpg9"; depends=[optimx ROI]; }; + ROI_plugin_qpoases = derive2 { name="ROI.plugin.qpoases"; version="0.3-1"; sha256="0ph6l85hrsc40wl443kkxywb2i0cjyh38g20000rnzhygl8kd7db"; depends=[Matrix Rcpp ROI slam]; }; ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="0.2-5"; sha256="1c4fd16kgg60gfs52xc64ii4kzl8fb8qz3rpy69d08avb4q6grir"; depends=[quadprog ROI slam]; }; ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="0.3-0"; sha256="0krlrmw85j1g35pvh4ig10djb6y6akyrfymkfk4dqg751w7mb4fm"; depends=[Matrix ROI scs slam]; }; ROI_plugin_symphony = derive2 { name="ROI.plugin.symphony"; version="0.2-5"; sha256="1kpa82g33i2fdcnkpcqdpslj14ilrl7cp0fq1jmp4vj8ddz1s9g5"; depends=[ROI Rsymphony slam]; }; ROMIplot = derive2 { name="ROMIplot"; version="1.0"; sha256="1njbsvnz7wrsv9l1p70p1ygmckaibz5i6jmvb0sfalp5jdcgl85n"; depends=[MortalitySmooth RCurl]; }; ROSE = derive2 { name="ROSE"; version="0.0-3"; sha256="12b9grh3rgaa07blbnxy8nvy5gvpd45m43bfqb3m4k3d0655jpk2"; depends=[]; }; - RObsDat = derive2 { name="RObsDat"; version="16.03"; sha256="06d4svg4crgscn3wyg1fi8v46wlhlrgdrbfiv8ak4a5k5z0gws94"; depends=[DBI e1071 sp spacetime vwr xts zoo]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; - ROpenDota = derive2 { name="ROpenDota"; version="0.1.1"; sha256="0d9a8c008bgzcd1hqly2h010f25xgs2s430hk90yq7vvqr3lmxl7"; depends=[jsonlite RCurl]; }; + ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; ROptEst = derive2 { name="ROptEst"; version="1.0.1"; sha256="0160xs3bmk1bdan7gkibc50qfzxlmi413grvs0bib74xlr0x2kgj"; depends=[distr distrEx distrMod RandVar RobAStBase startupmsg]; }; @@ -2968,39 +2982,39 @@ in with self; { RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.5"; sha256="0cf4mb7mjp7x3k7083c8n8fjbvrmcgq359wh6pdyj817mgkanqzv"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.6-2"; sha256="1mdhw5821v2h7hpa53v10wz53k4i90r0vb6a3dia5gq8f9j1h088"; depends=[DBI]; }; - RPostgres = derive2 { name="RPostgres"; version="1.1.0"; sha256="1h540z1zfzgkayggy28q07r0xnblr3vnp6j5j7la6xbz141gns38"; depends=[BH bit64 blob DBI hms plogr Rcpp withr]; }; + RPostgres = derive2 { name="RPostgres"; version="1.1.1"; sha256="1s25lkb69dkc5zk5ikbqa325jw5kfavghsq7s26mrcng4va9dz6i"; depends=[BH bit64 blob DBI hms plogr Rcpp withr]; }; RPresto = derive2 { name="RPresto"; version="1.3.0"; sha256="01w832ia4c44nhir5rzw33qa8h7afmf04vkfdlg32jaqi1gv5861"; depends=[DBI httr jsonlite openssl Rcpp stringi]; }; RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.11"; sha256="0q05hdlbgbjydi0x80kgfayfkisalvmb9wy1n6afcw66pbikyb4l"; depends=[Rcpp RCurl]; }; RPtests = derive2 { name="RPtests"; version="0.1.4"; sha256="1r30pslbjq3dip41la81jlin2vhxdmayg902x9ryjy554awfgh7j"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; RPushbullet = derive2 { name="RPushbullet"; version="0.3.1"; sha256="15cb1zlfnjaf5z4dqx3xrkbkja152ah7jhs21qhvfl20qz4cyh7r"; depends=[curl jsonlite]; }; RQDA = derive2 { name="RQDA"; version="0.3-1"; sha256="1kqax4m4n5h52gi0jaq5cvdh1dgl0bvn420dbws9h5vrabbw1c1w"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; + RQEntangle = derive2 { name="RQEntangle"; version="0.1.1"; sha256="1bkx95x1dwa8w6w1qj2aflcsvapa6sipfvqpgngwbp93m0fc10ws"; depends=[iterators itertools]; }; RQGIS = derive2 { name="RQGIS"; version="1.0.3"; sha256="0wrzjfxwciirl838lakcw7f6qyqyykqd999c9krll5krqzyq7c3c"; depends=[raster RCurl readr reticulate rgdal sf sp stringr XML]; }; RQuantLib = derive2 { name="RQuantLib"; version="0.4.4"; sha256="1pki0c265nmgph9dbz2pyrq8h7295mxswavfdwsr7m1lpbpzk8s5"; depends=[Rcpp zoo]; }; - RRF = derive2 { name="RRF"; version="1.7"; sha256="1nxwqb0ybia8cglqlrbwnm9xzab6ayrn5f3j3l0kqszq1rvkfw95"; depends=[]; }; + RRF = derive2 { name="RRF"; version="1.8"; sha256="09y9f3zx9jcn7rs6an7b0hvjavy2li7rl5nknxzxfx7qnlqajnld"; depends=[]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="0.1.0"; sha256="1c29zgfhhssg7m1ckn45bdk1jcqxs4q68bf4rq3jg8h1805jql1h"; depends=[]; }; + RRPP = derive2 { name="RRPP"; version="0.2.0"; sha256="0wi7b9vwghw96d7v46mq3rpi4iggm1h6948rkbj32zqnxg7sfq3r"; depends=[]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.3"; sha256="1riz1gjx3c0pf17xwybizb94nm5zgmfsnv6np3afvw831mb1x3l9"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; RRphylo = derive2 { name="RRphylo"; version="1.0.0"; sha256="1h167w16lky8aa18fc90rgclx1by3qa9d69n72dxmjzy0d14zjc6"; depends=[ape doParallel foreach geiger lmtest mvMORPH phangorn phytools pvclust R_utils rlist scales smatr]; }; - RRreg = derive2 { name="RRreg"; version="0.6.7"; sha256="0v0rzyknqwrnj3dx5lvifzllv1syzflnnby6mjmnsqqb2cgyscrf"; depends=[doParallel foreach lme4]; }; - RSA = derive2 { name="RSA"; version="0.9.11"; sha256="1hsjy755r78my6ib9s9da7mibcjxd5svh2kq0v7a466m60cyfrss"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; + RRreg = derive2 { name="RRreg"; version="0.6.8"; sha256="1x8jn7wn1vr4wqk1wjmgk7v5lg20giin735gnvf2mm56ji5amq4d"; depends=[doParallel foreach lme4]; }; + RSA = derive2 { name="RSA"; version="0.9.12"; sha256="0ii7isrk6c1wb3clbwqzr37v2kypwszi4rjf4caip96bmh7jg3kq"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; - RSAGA = derive2 { name="RSAGA"; version="1.0.0"; sha256="1023br8q0i6w18kmn261kf4ql32061hq7xngl1w5mamvvp17d6b1"; depends=[gstat plyr rgdal sf shapefiles]; }; + RSAGA = derive2 { name="RSAGA"; version="1.2.0"; sha256="1fkwgjicw8yrnkq1r925c22nn8khz6afksba6jpvm1jbwlkmhpzw"; depends=[gstat plyr rgdal shapefiles]; }; RSAP = derive2 { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[reshape yaml]; }; RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; RSCABS = derive2 { name="RSCABS"; version="0.9.3"; sha256="08ykkqx9rdx5s6wg2idxz35ddpsz1lir22vrjs92k51zq0jrkhv9"; depends=[gWidgets gWidgetsRGtk2 R2HTML RGtk2]; }; - RSDA = derive2 { name="RSDA"; version="2.0.3"; sha256="18rka6g93yksgnwgzy4planjvsmc4d5xzf4fxarv57v6frg37y98"; depends=[abind dplyr FactoMineR ggplot2 glmnet lazyeval nloptr pander princurve RColorBrewer RJSONIO rlang scales scatterplot3d sqldf stringr tidyr XML xtable]; }; - RSEIS = derive2 { name="RSEIS"; version="3.7-8"; sha256="0f065jkdz91gi6l8y5y4m95vwgjsagrxx6r5982jbafi7zyqxm7j"; depends=[RPMG Rwave]; }; + RSDA = derive2 { name="RSDA"; version="2.0.4"; sha256="1pmqwrwjmw5fsvx3aiy8q4w4w0zh81l1118ny5g3rrb5g6ybnrxs"; depends=[abind dplyr FactoMineR ggplot2 glmnet lazyeval nloptr pander princurve purrr RColorBrewer RJSONIO rlang scales scatterplot3d sqldf stringr tibble tidyr tidyselect XML xtable]; }; + RSEIS = derive2 { name="RSEIS"; version="3.8-1"; sha256="0i4wlym8glsg90fxmzagji45xni2s04jzyrbakkil09n9rpsrl6n"; depends=[RPMG Rwave]; }; RSGHB = derive2 { name="RSGHB"; version="1.1.2"; sha256="0b2v17p3a3sy8jc4vy0nq65sdkxyf0b8sf5f78yvdcn5knydah6c"; depends=[]; }; RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; - RSMET = derive2 { name="RSMET"; version="1.2.9"; sha256="1da7kck5g0vcd1ly7xaa1i8d9b1qjf6kwf35sq5d71hfbgx2fb4k"; depends=[stringr]; }; RSNNS = derive2 { name="RSNNS"; version="0.4-10"; sha256="1khsv1sy8jgsl9s5fypcg77lzj811xzrygwnq6ki9v375sk383gh"; depends=[Rcpp]; }; RSNPset = derive2 { name="RSNPset"; version="0.5.3"; sha256="1llx6anwkl4as0hdyvmsrlg9z8mkn9p1qxgs6kqs39w87gyx0j36"; depends=[doRNG fastmatch foreach qvalue Rcpp RcppEigen]; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; }; - RSQLite = derive2 { name="RSQLite"; version="2.1.0"; sha256="0hknfqcgijdapx1ryy20zy68qmm8wsb1hjx4n4hmkgl552z82q5d"; depends=[BH bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; + RSQLite = derive2 { name="RSQLite"; version="2.1.1"; sha256="1giwk4335sc6yhj3rs8h070g1mwy38kyqyqv6vcfxvskykj7vp6z"; depends=[BH bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; RSSL = derive2 { name="RSSL"; version="0.6.1"; sha256="03f0i0v0nygkcci42h4bh7jngxz15wsd78cn2zkzbrqadz1c61r5"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; @@ -3009,16 +3023,15 @@ in with self; { RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; - RSelenium = derive2 { name="RSelenium"; version="1.7.1"; sha256="04ghck76jh7w6kgzdszkzjwj9fhyngq13mf9iybavxph5wcy7xgq"; depends=[binman caTools httr openssl wdman XML]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.1"; sha256="0djp530yzj5a6y5nqk98pdvsgy9apqcqvkz0yjqx6856d9wrycm0"; depends=[NLP openNLP plyr stringr]; }; - RSiena = derive2 { name="RSiena"; version="1.2-3"; sha256="125qkh8j42zm8r4acxw20m6ylq6vksja3qz6zxyyvfd3l2vqb2gy"; depends=[lattice MASS Matrix]; }; - RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.14"; sha256="0h5s9vhihjlz44l61vm83zqavkglb6f304sb04n0vhzzl797l04c"; depends=[base64enc digest httr jsonlite plyr stringr]; }; + RSiena = derive2 { name="RSiena"; version="1.2-12"; sha256="1bc0vdqqzkf3q3b6rzqiwd29lcq8vbvlj2qkxbx6v8wjphycz6rw"; depends=[lattice MASS Matrix]; }; + RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.15"; sha256="13mrqf458m43g435g4pbg49pid63f4ap1r8jzl84mvj1b36hy4q6"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.2"; sha256="0phkk79ng4r54w3d4ajl505gs8svlzdf1g6q50lhraq2cbllbvgx"; depends=[RCurl]; }; RSocrata = derive2 { name="RSocrata"; version="1.7.4-7"; sha256="1cblp0fq7836jkb8cps3l1f8gx25bsdclkjvmxmd4b79y4hapiy2"; depends=[httr jsonlite mime plyr]; }; - RSpectra = derive2 { name="RSpectra"; version="0.12-0"; sha256="0aa33mhzj03gznpza5l5qj94s45imfhrgx52bsa8rq00f93fgaf0"; depends=[Matrix Rcpp RcppEigen]; }; + RSpectra = derive2 { name="RSpectra"; version="0.13-1"; sha256="1sw80chwyyjzf5px278l6xmp94yhwrlj5xh8d3wlw3dnvdkycca7"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; - RStoolbox = derive2 { name="RStoolbox"; version="0.2.1"; sha256="1lvjiaamd2jz1m1prk429lwfwqbm3dcyq6v8hddkynd0k28qbw6s"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; + RStoolbox = derive2 { name="RStoolbox"; version="0.2.3"; sha256="06b54g186bwgl5g8wkbj6q05bdy6sqvx433xwwvj7az1qxpa5kwr"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; RStorm = derive2 { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.0"; sha256="1lvl9msnd8l9svd9nyivx1cqfmcxirxvfjfj0xv7yjklza8af7w3"; depends=[epiR epitools mc2d]; }; @@ -3031,12 +3044,11 @@ in with self; { RTaxometrics = derive2 { name="RTaxometrics"; version="2.3"; sha256="02446y86g21i37ycavg0xc1ggxk0k93d38n71fis9fav06lywxx3"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[caTools e1071 glmnet ipred maxent nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; - RTransProb = derive2 { name="RTransProb"; version="0.2.0"; sha256="0ka923kg52f7dv19z9vjb7m9ji12wk92kva41idryfignxpa2bkf"; depends=[chron e1071 expm MASS Matrix matrixStats nnet pracma Rcpp RcppArmadillo zoo]; }; + RTransProb = derive2 { name="RTransProb"; version="0.3.0"; sha256="010nsw97b0yi5l6fkwx04aacv47fww9lp7pgjdm8nb7gg9yif2bx"; depends=[caret chron e1071 expm MASS Matrix matrixStats neuralnet nnet pracma Rcpp RcppArmadillo zoo]; }; RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; }; - RUnit = derive2 { name="RUnit"; version="0.4.31"; sha256="1jqr871jkll2xmk7wk5hv1z3a36hyn2ibgivw7bwk4b346940xlx"; depends=[]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-69"; sha256="1fcblvvpydczakvjsiz8ffcs8zid2ln6dbah0y9ha3xfzp2qcj4z"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman vegan]; }; + RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-69-3"; sha256="18m4f1h0jnc8k03vpmyr8gcr4l6k0anjy660qrz8sqcaasp3ikj1"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman vegan]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; - RVPedigree = derive2 { name="RVPedigree"; version="0.0.3"; sha256="0v47bcdlcd0ydw4vffy1g9lj1azvyqwz4400nmlqshf9vqyhf9qq"; depends=[CompQuadForm doParallel foreach kinship2 ks Matrix snpStats]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.7"; sha256="08mhn6732sb284y4garx0nvhad4r42pk39p3r82fad4c1c3rxkhg"; depends=[]; }; RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.12"; sha256="1x3pq6cnkjashf49imrw76xkw9nzqgn9132l03l9v4vacgh0s47m"; depends=[Rcpp]; }; @@ -3044,7 +3056,7 @@ in with self; { RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; }; RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; - RWeka = derive2 { name="RWeka"; version="0.4-37"; sha256="1q0riy7w2ighyy7fh1hj3q4wa0vbbn6h7nisgkyzwkcxkfq3n2pw"; depends=[rJava RWekajars]; }; + RWeka = derive2 { name="RWeka"; version="0.4-38"; sha256="1c0jvz2d04h31g4mp8sg9vrp5138n97gavji18yiij7pd11g5qda"; depends=[rJava RWekajars]; }; RWekajars = derive2 { name="RWekajars"; version="3.9.2-1"; sha256="006n7m3qxnzvfhkzcr0nbwqdlhygzdhyp8x3534dx6075bm00v0f"; depends=[rJava]; }; RWiener = derive2 { name="RWiener"; version="1.3-1"; sha256="0w12xvc18l002m8q6ad3laa667xzqjbcfqf0vvcmicgw2j3bbq6h"; depends=[]; }; RWildbook = derive2 { name="RWildbook"; version="0.9.3"; sha256="1pznzmv8n33hhj61h07fha1gzafcx705n8323cnz3mx6ziijfh28"; depends=[data_table jsonlite marked]; }; @@ -3054,12 +3066,14 @@ in with self; { RYandexTranslate = derive2 { name="RYandexTranslate"; version="1.0"; sha256="0qrv5mnnkn5fs7vx6i74z46s0qj9f98km5bizgj00832qyrq8q1s"; depends=[httr jsonlite RCurl]; }; RYoudaoTranslate = derive2 { name="RYoudaoTranslate"; version="1.0"; sha256="1i3iyqh97vpn02bm66kkmw52ni29js30v18n2aw8pvr88jpdgxm4"; depends=[RCurl rjson]; }; RZabbix = derive2 { name="RZabbix"; version="0.1.0"; sha256="0c5803chpzvp7dk9pjfx5f0nqynb76ywakz04ah2nw07ypvcyjyr"; depends=[httr jsonlite]; }; - RZigZag = derive2 { name="RZigZag"; version="0.1.5"; sha256="0cawn24z0rm78dn8l86k3zfh4z3xp1i910dzxp7xqjzlh3spp4ar"; depends=[Rcpp RcppEigen]; }; + RZigZag = derive2 { name="RZigZag"; version="0.1.6"; sha256="1sb1lmm5vnzkbzqxbmipkm2zb01zg2x15jgyrsplardyy8kpqxn7"; depends=[Rcpp RcppEigen]; }; + RZooRoH = derive2 { name="RZooRoH"; version="0.1.1"; sha256="10l7i4fdjvq921ngbcd5kmbaq9zvl44p5clyd6zyq8d7598ffz77"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaPKod = derive2 { name="RaPKod"; version="0.9"; sha256="1qxzi2lf431zd44bcd98ybhzydy1cz12g864l6r668jk91aqy1qg"; depends=[kernlab MASS proxy Rcpp RcppArmadillo]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.4"; sha256="1ri6ybzhfdgbrbfcy12mmvv2ipg61az7vwp1dbjyzs8mgsc1cxb5"; depends=[geometry oro_dicom ptinpoly rgl]; }; RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; Radviz = derive2 { name="Radviz"; version="0.7.0"; sha256="0x1b3s3i3f775m7ragvzpdswljry8adbkjb6aq35aqasnkvvnysq"; depends=[gridBase hexbin KernSmooth MASS]; }; + RagGrid = derive2 { name="RagGrid"; version="0.1.1"; sha256="0jx3ch42ilcf6baw0pv42cs9lbhharma78bd8vps403p69ray4z8"; depends=[crosstalk htmltools htmlwidgets knitr]; }; Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; }; Rambo = derive2 { name="Rambo"; version="1.1"; sha256="1yc04xsfkc54y19g5iwambgnlc49ixjjvfrafsgis2zh5w6rjwv8"; depends=[sna]; }; RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; }; @@ -3067,7 +3081,8 @@ in with self; { RandVar = derive2 { name="RandVar"; version="1.0.1"; sha256="0vj0p46xmj4129m6r5zg85fnvb5kx1ardwwk55nqypkxd0v58a4j"; depends=[distr distrEx startupmsg]; }; RandomFields = derive2 { name="RandomFields"; version="3.1.50"; sha256="0j7852wvclglp820y2x5r19gsr6ciygbbpl5qvwj1khnlz1hfsid"; depends=[RandomFieldsUtils sp]; }; RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.3.25"; sha256="0nxk7jhr61l9h76hf96f7ypakl4wip144c0gzr6rqsja6m75rjz3"; depends=[]; }; - RankAggreg = derive2 { name="RankAggreg"; version="0.6.4"; sha256="1bskq723jx87xczw416pijajna73zhjjmbrvh3n6djxy8yjxhrq5"; depends=[gtools]; }; + RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.1"; sha256="0hmami515jv916lxdwv31w3w2bjn954qwibvgw1qlqn8d5swndiw"; depends=[jpeg shiny tidyverse]; }; + RankAggreg = derive2 { name="RankAggreg"; version="0.6.5"; sha256="031mff1zydxqygx8bn3g0qpwq08kaq5bpmzy6z2y0fa03hgsxz5c"; depends=[gtools]; }; RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; Rankcluster = derive2 { name="Rankcluster"; version="0.94"; sha256="0ak6cpm073ym4h9l3j7pq0ks9h4is1hzxfjn52j23nc5ifq3fjpq"; depends=[Rcpp RcppEigen]; }; RankingProject = derive2 { name="RankingProject"; version="0.1.1"; sha256="1n1282pym7q2b1bh18wlkmk9f0simzq149h7hacc23vyqzgkjs84"; depends=[]; }; @@ -3075,7 +3090,7 @@ in with self; { Rarity = derive2 { name="Rarity"; version="1.3-6"; sha256="1m742qrgc0c5vda9sb2q5n3ghmqnlnfhr1cfpxfs7s5ic707gmlb"; depends=[]; }; RaschSampler = derive2 { name="RaschSampler"; version="0.8-8"; sha256="0y7dkgv1cy6r1mbmyqm27qwl10rl12g1svpx9jkzq5hq0hnm2xhw"; depends=[]; }; RateDistortion = derive2 { name="RateDistortion"; version="1.01"; sha256="1micjlbir1v5ar51g1x7bgkqw9m8217qi82ii6ysgjkhwdvpm075"; depends=[]; }; - RatingScaleReduction = derive2 { name="RatingScaleReduction"; version="1.2.1"; sha256="0dcyajh3vgdl9ssdwgaf3sshq61bqqhjz30f9c99aqnpv3k4k76x"; depends=[ggplot2 pROC]; }; + RatingScaleReduction = derive2 { name="RatingScaleReduction"; version="1.2.2"; sha256="15xkfjp0bkx9wjp8y27vs0iq2ir4qxjdl8405ix59sjb6lkvv3l2"; depends=[ggplot2 pROC]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; @@ -3086,12 +3101,11 @@ in with self; { Rcereal = derive2 { name="Rcereal"; version="1.2.1"; sha256="0nl4p0wqpni16z62610sqcxsz1x6kannl2s1zakpmjkk80pyxlk6"; depends=[]; }; RcextTools = derive2 { name="RcextTools"; version="0.1.1"; sha256="1rrij4ryspff9mn1c3jlzjprnipak7nzlb488pk0ci0awaccp5ga"; depends=[data_table igraph sqldf visNetwork]; }; Rcgmin = derive2 { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; + RchivalTag = derive2 { name="RchivalTag"; version="0.0.7"; sha256="0i25rj3f54km2gdr8izgvqdbdbcq4nikywn5narm7sg79fv43pd4"; depends=[mapdata maps maptools ncdf4 oceanmap PBSmapping plyr raster rgeos sp]; }; Rchoice = derive2 { name="Rchoice"; version="0.3-1"; sha256="1mx50270vbhvng4vdcc6w94f3l890vjl41y07bqkv40n93fxvffw"; depends=[Formula maxLik msm plm plotrix]; }; Rclean = derive2 { name="Rclean"; version="1.0.0"; sha256="065jq957xsk9p1nnzf8ilp9swjfxhydgc7xg57lfcg9hz99ckwfr"; depends=[formatR igraph jsonlite]; }; - Rclusterpp = derive2 { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen]; }; Rcmdr = derive2 { name="Rcmdr"; version="2.4-4"; sha256="0n15wkhn8hfhcpz0n2ngxkfaysjsizksxxr1fhpfjmlpy4wxxnx0"; depends=[abind car effects RcmdrMisc relimp tcltk2]; }; RcmdrMisc = derive2 { name="RcmdrMisc"; version="1.0-10"; sha256="1fxcm0iwxdqh9qv2g6w7sqbg23zgl5z5ib2x69j5n10fglx89m8f"; depends=[abind car colorspace e1071 foreign haven Hmisc MASS nortest readstata13 readxl sandwich]; }; - RcmdrPlugin_BCA = derive2 { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xkip7q9i57ghgz0rh0pl8nkl7bflf4w1g4zbyjdlcjypyf7lnr8"; depends=[BCA car flexclust foreign nnet Rcmdr RcmdrMisc rpart rpart_plot]; }; RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.1"; sha256="1sdc8ibggz8wpn77g7hddyl7lg86dbyw8qax63p6cqx1pfhb4rra"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr rqubic s4vd superbiclust viridis]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; @@ -3102,12 +3116,13 @@ in with self; { RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.6-0"; sha256="07k9x3mdaqzk1503wjsha9f8bxzw1074i9g7sa16yqz5lwky4lr7"; depends=[FactoMineR Rcmdr]; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; }; RcmdrPlugin_GWRM = derive2 { name="RcmdrPlugin.GWRM"; version="1.0.2"; sha256="01q4k9s815pgd5cavm6nyxy5npmpxryari9v6wys4n5cjpn5g6xq"; depends=[GWRM Rcmdr RcmdrMisc]; }; - RcmdrPlugin_HH = derive2 { name="RcmdrPlugin.HH"; version="1.1-46"; sha256="0bl9nq89ga16rxlf411lbm5qsx28f1axxwchr5rp46n0h15d0d3f"; depends=[HH lattice mgcv Rcmdr]; }; + RcmdrPlugin_HH = derive2 { name="RcmdrPlugin.HH"; version="1.1-47"; sha256="1bba11izs1jhjsyb0d45c34gcihapk231qbiabcxf8x93sdmg6ga"; depends=[HH lattice mgcv Rcmdr]; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1"; sha256="1lk7divj5va74prsnchq8yx9fbyym7xcsyqzkf72w448fgvvvwlv"; depends=[Rcmdr]; }; RcmdrPlugin_KMggplot2 = derive2 { name="RcmdrPlugin.KMggplot2"; version="0.2-5"; sha256="069kpvhflk0rwwll0vyxfdrln1lzr1zhzfzm39si63ji6v7l6msb"; depends=[ggplot2 ggthemes plyr Rcmdr RColorBrewer scales survival tcltk2]; }; RcmdrPlugin_MA = derive2 { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[MAd metafor Rcmdr]; }; - RcmdrPlugin_MPAStats = derive2 { name="RcmdrPlugin.MPAStats"; version="1.2.1"; sha256="0c3mcr8bmmbpxsqm8zfy07cbyglnq5466nafbglfs5m0z836yz9i"; depends=[ordinal Rcmdr]; }; + RcmdrPlugin_MPAStats = derive2 { name="RcmdrPlugin.MPAStats"; version="1.2.2"; sha256="1ynj42p12ncgrbghd8w7mkyys2cq9r9dpbir57rj3k5l46yzj7d5"; depends=[ordinal Rcmdr]; }; RcmdrPlugin_NMBU = derive2 { name="RcmdrPlugin.NMBU"; version="1.8.8"; sha256="1s7947zvrhjrc7vchvaajp2q7xdqfg5vsmg6r7ym416cqq39i5kd"; depends=[MASS mixlm phia pls Rcmdr xtable]; }; + RcmdrPlugin_OptimClassifier = derive2 { name="RcmdrPlugin.OptimClassifier"; version="0.1.2"; sha256="0gisjw1iniihy2c2mr9f9pxfnfr2dc0s482wb9yfn88vknx8d0rn"; depends=[OptimClassifier Rcmdr RcmdrMisc]; }; RcmdrPlugin_PcaRobust = derive2 { name="RcmdrPlugin.PcaRobust"; version="1.1.4"; sha256="17rq3sv8payazjjn5j37cgd6df5b62d2y8al3grw6hw5nfba7lvn"; depends=[Rcmdr robustbase rrcov tkrplot]; }; RcmdrPlugin_RMTCJags = derive2 { name="RcmdrPlugin.RMTCJags"; version="1.0-2"; sha256="04g5a1dpch54k5ckfkrg4vsap1nc3af1i0i559qigv3hy8n7pm80"; depends=[coda igraph Rcmdr rjags rmeta runjags]; }; RcmdrPlugin_ROC = derive2 { name="RcmdrPlugin.ROC"; version="1.0-18"; sha256="0alwsvwry4k65ps00zvdqky9rh663bbfaw15lhwydbgcpqdkn2n6"; depends=[pROC Rcmdr ResourceSelection ROCR]; }; @@ -3116,15 +3131,15 @@ in with self; { RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; }; RcmdrPlugin_SM = derive2 { name="RcmdrPlugin.SM"; version="0.3.1"; sha256="10sjh2x02kb6yaxbvd9ihc6777j4iv6wi6k42gyl3k7i2c39fyn3"; depends=[car colorspace Rcmdr RColorBrewer vcd]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.1-0"; sha256="0fgl1v1g74ca14pf3mmbv26j09v7jy6ddyap5qavgiy9s8qrwrh8"; depends=[Rcmdr rgl TeachingDemos tkrplot]; }; - RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.1-4"; sha256="0wzcqmrv9qvdcrcz0vcp5fl8f71zg6c355qrr9476524aidb29my"; depends=[randtests Rcmdr TeachingDemos tseries]; }; + RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.2-4"; sha256="17ivr48y0wh89nphjzfmgdgpsfsxw4n6bfwjln0crvqhm4xh6qmh"; depends=[randtests Rcmdr TeachingDemos tseries]; }; RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; RcmdrPlugin_depthTools = derive2 { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[depthTools Rcmdr]; }; RcmdrPlugin_doex = derive2 { name="RcmdrPlugin.doex"; version="0.2.0"; sha256="0l3c8vwifyl8a7qkfaqxm7cws2cg1g501qa93w5svcgp03yf98mj"; depends=[multcomp Rcmdr]; }; RcmdrPlugin_epack = derive2 { name="RcmdrPlugin.epack"; version="1.2.5"; sha256="1577qhac4rldifax5x3l39cddan6dhq2dv4iv2n64nadgrl0259w"; depends=[abind forecast MASS Rcmdr TeachingDemos tseries xts]; }; - RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.1"; sha256="1ak2fvz1sdbdr1y1w7i15gibwdh4a3662kvr23pka4lfpbsyrah8"; depends=[lfstat Rcmdr]; }; + RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.3"; sha256="1rcr43dqyb9zw9av3awkz0640vmvhxrafal5brnhqnpg4hfbpma3"; depends=[lfstat Rcmdr]; }; RcmdrPlugin_mosaic = derive2 { name="RcmdrPlugin.mosaic"; version="1.0-7"; sha256="0k6xaz2dfm9ch9lxqsh19jm8d4bbyjj2ffmjjxl57kanb3pvrrwv"; depends=[ENmisc Hmisc Rcmdr vcd]; }; - RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.1"; sha256="19qj6llr5sfw267dgbn2jvrsisb54qbjhgaiigfzymk6px33wwmg"; depends=[orloca orloca_es Rcmdr]; }; + RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.5"; sha256="1rjlc5v9ksndmzcdw5lkqvzxpsanvglm20ppbw49nna8rsylkj08"; depends=[orloca orloca_es Rcmdr]; }; RcmdrPlugin_plotByGroup = derive2 { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; }; RcmdrPlugin_pointG = derive2 { name="RcmdrPlugin.pointG"; version="0.6.6"; sha256="0sc3akbpdys353va05b40g3rq8qihw0pmhvv0kckkhsgrbr8mc07"; depends=[Rcmdr RColorBrewer]; }; RcmdrPlugin_qual = derive2 { name="RcmdrPlugin.qual"; version="2.2.6"; sha256="00wznh0k909cd9vwdj1ag3224xkqnwjsad1bfkgxbszsx0w6xvy9"; depends=[Rcmdr]; }; @@ -3133,48 +3148,50 @@ in with self; { RcmdrPlugin_steepness = derive2 { name="RcmdrPlugin.steepness"; version="0.3-2"; sha256="1na98sl42896y7yklaj07sn88lj6p6ik7gwy9ffaxzicqaa8plgf"; depends=[Rcmdr steepness]; }; RcmdrPlugin_survival = derive2 { name="RcmdrPlugin.survival"; version="1.2-0"; sha256="1z13rf5iwmzb7mj3yn4ykkh1r9bl4f4idlc4a34rn4psi9j7wlh1"; depends=[date Rcmdr survival]; }; RcmdrPlugin_sutteForecastR = derive2 { name="RcmdrPlugin.sutteForecastR"; version="1.0.0"; sha256="1np42kizkk572vharki84ka34lr7bdlckn4227bnq2l37c0zsq5y"; depends=[Rcmdr sutteForecastR]; }; - RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.9"; sha256="0nacpipaimb1348rhv1rma85gnd38wsg741pz7xpvn347wnnc0wz"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; + RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.10"; sha256="02rs5xdj6g57frndc87fly0ans16584j4d0rfpy1h72655cz66ab"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; }; - Rcpp = derive2 { name="Rcpp"; version="0.12.16"; sha256="1rm8hcy72p1jvxikvmkwg20pjqmvmfvqb45lfghmddp2adp67qfl"; depends=[]; }; + Rcpp = derive2 { name="Rcpp"; version="0.12.17"; sha256="08xg8h3w25sdb3xr18g9pa0x8cirkdgljqapxmw56ss1j9fc89s2"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.4"; sha256="0xbaamv3bg08ymbmiq6kwh86p17y6qzgydq02syig2a3ykp0042c"; depends=[Rcpp]; }; - RcppAlgos = derive2 { name="RcppAlgos"; version="1.0.1"; sha256="0668anb3kjw3h71n2hjqqjrmiz4dwrgw71ikviq0imw2v5030392"; depends=[Rcpp]; }; + RcppAlgos = derive2 { name="RcppAlgos"; version="2.0.3"; sha256="0m1hj249hyn6vwhqn2jismqkd07glk7nxqxwpq81rph9wp50ji0a"; depends=[Rcpp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.10"; sha256="08s86ak26zybawry6l6l30k1lakc71k2j58539h70dnrmsd15jna"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.8.400.0.0"; sha256="11y2ksf46zw6fcz0kk70szyfn7qqxwwd33xylrxvnyb7ldmbc5yr"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.8.600.0.0"; sha256="15wqk6lnaxf6az9ccvmzpx6pi2cs19ng8j3qvk5zw1niljpp8n3k"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; RcppBlaze = derive2 { name="RcppBlaze"; version="0.2.2"; sha256="0hi7gh7xlmdcyzxsis8wl841d6czbcgb8qdg8y822am1mvc0wmb7"; depends=[BH Matrix Rcpp]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.3"; sha256="0cb04filbr0mymcg891lc0dw2b3fnjmhn8z50xcilb3v72ccrvqg"; depends=[Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.9"; sha256="0c6vdrf16f8fyaczzwapzn513wrdklsc8izmzfmfbc58s5500gvk"; depends=[Rcpp]; }; - RcppCWB = derive2 { name="RcppCWB"; version="0.1.7"; sha256="13iax4kr5gchm483gib3cdjcbvkymhiwbpnj705c325fbsfk5rj7"; depends=[Rcpp]; }; - RcppClassic = derive2 { name="RcppClassic"; version="0.9.9"; sha256="102gi1l6hxdkz50iy9xbpb57iy5j7flv78sdq36pn9zi8x4k8k95"; depends=[Rcpp]; }; + RcppCWB = derive2 { name="RcppCWB"; version="0.2.4"; sha256="00zgxdakjza8i0wi6zj7lri8ma0pxnsgccm9q16i2nqqndvk4q34"; depends=[Rcpp]; }; + RcppClassic = derive2 { name="RcppClassic"; version="0.9.10"; sha256="1q0vld06dp00d2qdwnnrga4n9abiymqw74zpci2kx813n5z1l0yc"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; - RcppDE = derive2 { name="RcppDE"; version="0.1.5"; sha256="1zgz8h7d7jjml9hm164y9wrsgcb1fymp3ipxp235fmk44lbrwpcw"; depends=[Rcpp RcppArmadillo]; }; + RcppDE = derive2 { name="RcppDE"; version="0.1.6"; sha256="1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.4.0"; sha256="1m6ssq6lvi36ggf26y4hhq996583pxxdb978jnn1x6r9gdb0q0hi"; depends=[Matrix Rcpp]; }; + RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.8"; sha256="15iw2vx6ygb03siq743418whhqvfrxk2i4nqn7p9yg1m3jwafxna"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.3"; sha256="0ih6lcby6rx0pkzwnd4bxq40cxa3cw9nfrphhhm9q71ng5vj1vrr"; depends=[Rcpp]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.6"; sha256="16pdapq31729db53agnb48jkvdm97167n3bigy5zazc3q3isis1m"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.2"; sha256="0z5sg2jlr465196ws2pqi7j7hfmd7j8xlqqj6841m635cg4q48ba"; depends=[Rcpp]; }; RcppGreedySetCover = derive2 { name="RcppGreedySetCover"; version="0.1.0"; sha256="1v84i9gsmvpkmgd4niqnzp58nhrgn2j4rggsrnlh391ikdfrl51x"; depends=[BH data_table Rcpp]; }; RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; RcppHoney = derive2 { name="RcppHoney"; version="0.1.7"; sha256="1jnng6271i2a564y115mr2bq324xffcjpq0ysy8yar2cgljxgspr"; depends=[Rcpp]; }; RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-6"; sha256="0vjx6azp3sny6nv5k1cs6vk61hmbllqw8mgvi7zn15p7ilmhsyyi"; depends=[BH Rcpp RcppArmadillo]; }; - RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.1"; sha256="0pd5jgv24yskxzp76c3i6lkpq9npdgw1i15dcf02v9h43q8n1s9s"; depends=[BH Rcpp]; }; + RcppMeCab = derive2 { name="RcppMeCab"; version="0.0.1.2"; sha256="0varavfbrqzma176rw0dr9v5chh7pxh5y9g0rs3v7hqnlghp22y2"; depends=[BH Rcpp RcppParallel]; }; + RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.2"; sha256="0118ajmgl8gdc1cd47x0pnp4qglszc3j3izw98m6y2gkm3rnkzad"; depends=[BH Rcpp]; }; RcppNumerical = derive2 { name="RcppNumerical"; version="0.3-2"; sha256="0j0hvwsbidahk2zx3zk7fhc6m9cca27iq3ivx7vdvggz8iqzszrz"; depends=[Rcpp RcppEigen]; }; RcppParallel = derive2 { name="RcppParallel"; version="4.4.0"; sha256="1gjqmkzsi1fi0vss1nvq6i77j3aixdxd047mw9vf4l60z2ypr3h1"; depends=[BH]; }; - RcppProgress = derive2 { name="RcppProgress"; version="0.4"; sha256="09ayw6d69i0lplmaj5md25p5hn1nmiyp6a4sh60v93nrrs1cq7iv"; depends=[devtools Rcpp]; }; + RcppProgress = derive2 { name="RcppProgress"; version="0.4.1"; sha256="0yk01hfv961zyp569682k9igvhnwqyg5j0n5fm63sxigj82l2xhi"; depends=[]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.2"; sha256="1si5njb8g4g6fjrkqbp3y6z23yxs901nq9kmiwwbqs8di6svc5q3"; depends=[BH Rcpp]; }; RcppRedis = derive2 { name="RcppRedis"; version="0.1.8"; sha256="05c4c65ayiqyzmkj2mrgwwflgjk54rf9nmb3rhickj16yy9b071q"; depends=[BH RApiSerialize Rcpp]; }; - RcppRoll = derive2 { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp]; }; + RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.1"; sha256="0k2k1pj05i6hf7gpar3r4mbv9cs04bd4v657saq9vhy30300vg49"; depends=[Rcpp RcppArmadillo]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.1"; sha256="0sa0ndnfm89f8lh3ba6jf3gxaan1g97dhlzbmpkwqj22frgggqjw"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.1.3"; sha256="0krw4104m8drgyf53aq22kl5q0abrd0y4j1fvrwsj1dkbkybas05"; depends=[Rcpp]; }; - RcppThread = derive2 { name="RcppThread"; version="0.1.3"; sha256="1nnyamjap1kgganvgwj48nip8nd7h35hzj7yvd131jnpq31gvvjg"; depends=[Rcpp]; }; + RcppThread = derive2 { name="RcppThread"; version="0.4.0"; sha256="0snrs66r19zha43xqkgcz1r15f7x8ifg1vyi0d7j175bkmin2jlb"; depends=[Rcpp]; }; RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.0"; sha256="0833j7hy7dpdxkj1m5cfyxzpp7j0n7mxjc5kx32mdn5s43iaf7yh"; depends=[Rcpp]; }; RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; - RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.4"; sha256="16wdsm0zzn6q0h29a1w8yjn4zxvrirsws6h31k0ljgprsn3jjhz4"; depends=[Rcpp RcppGSL]; }; + RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.5"; sha256="0zmr3nvm5j0fpwxk3x9kxpwqbr66ldfvd10zy8xlgjbslz9myvfv"; depends=[Rcpp RcppGSL]; }; Rcrawler = derive2 { name="Rcrawler"; version="0.1.7-0"; sha256="0r8s3d4dby9vn0qc5lbhab4vh3yl5yifi7ipxafsgffdxislnsdw"; depends=[data_table doParallel foreach httr selectr xml2]; }; Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; Rcsdp = derive2 { name="Rcsdp"; version="0.1.55"; sha256="1sskjf2vv5alnwirz676d8yphzk2a69wkghhkpxb8my1rjlfdgaw"; depends=[]; }; @@ -3184,7 +3201,7 @@ in with self; { Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdimtools = derive2 { name="Rdimtools"; version="0.3.2"; sha256="0wk6sv2ahxscy4nsk826c9rlq8vxgnflg9banwdxhs6qlqhipnlb"; depends=[ADMM CVXR Matrix Rcpp RcppArmadillo Rcsdp Rdpack RSpectra Rtsne]; }; Rdistance = derive2 { name="Rdistance"; version="1.3.2"; sha256="1ajmr58lgc74727jiydfrh4j6ra7vq8hp8nm3l2s3g2mc8n1mqk5"; depends=[]; }; - Rdpack = derive2 { name="Rdpack"; version="0.7-0"; sha256="0j8jh5zj4nhcchl3xr6n6bvc4m0irjz44mw5690f7iqfi3mzkii6"; depends=[bibtex gbRd]; }; + Rdpack = derive2 { name="Rdpack"; version="0.8-0"; sha256="0r4mcg7mqb7h0c6pn0vh622vw7kvdpmy51qvhgf753yywfznkwq6"; depends=[bibtex gbRd]; }; Rdrools = derive2 { name="Rdrools"; version="1.0.3"; sha256="1y805j2xrv8kgh42s5lig07mb76fcz5yrxal0zaykj16cvid8287"; depends=[Rdroolsjars rJava]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdsdp = derive2 { name="Rdsdp"; version="1.0.4-2"; sha256="05bk6yqvhzvyfzga1dz34w68nlwl2dc8bvhh3ghd07a61fsnkg4x"; depends=[]; }; @@ -3192,19 +3209,19 @@ in with self; { Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; }; Rduino = derive2 { name="Rduino"; version="0.1"; sha256="0r1yy3a2n8a4niasfjn77gv130a062i802r7xhbg0abljv5m6ra5"; depends=[serial]; }; ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; - ReIns = derive2 { name="ReIns"; version="1.0.6"; sha256="1q2f3ggg534dlgrmb4bsv8ikph11qg29asw1fpkndd9a96kc8gbk"; depends=[doParallel foreach Rcpp survival]; }; + ReIns = derive2 { name="ReIns"; version="1.0.7"; sha256="1r28wyb7yh5aymlnd3yxkqmn4lnfnipfsnpbgl71zql763fchwlg"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; - RealVAMS = derive2 { name="RealVAMS"; version="0.4-0"; sha256="1byh7in3bpfgdwfxp15334h167bvrcfj0cdswqy3yd81l9g2ickn"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; + RealVAMS = derive2 { name="RealVAMS"; version="0.4-1"; sha256="13x8yryl5vp3rn6n2hd14ng6cgr3bxkps4y1vanimbwv4faa8116"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-10"; sha256="09xp0ad7v2bsg1r7gf3awdqcpds0v3ygsbnkm8ysy8w14sbrrydf"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; - RedditExtractoR = derive2 { name="RedditExtractoR"; version="2.0.2"; sha256="1113dm41rhyimn7jc3pkrdqz3biqg5m174vz24jchhmn9n38zsss"; depends=[igraph RJSONIO]; }; + RedditExtractoR = derive2 { name="RedditExtractoR"; version="2.1.2"; sha256="0qbgamqkwh31ybk6a0jrd2r7jfvzprm6s90fiwpld8rzimgnh4f9"; depends=[dplyr igraph magrittr RJSONIO rlang visNetwork]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.1"; sha256="1w0cx988ixl10d8ylfsblmk1mdd9dhzxdhp9z4n1643dkd2xzr02"; depends=[isva quadprog]; }; - RefManageR = derive2 { name="RefManageR"; version="0.14.20"; sha256="18g2w32ldfakmnmlk1gaxq64jhx4iy7kil1s7g6lnvv1fygxpg8k"; depends=[bibtex httr jsonlite lubridate plyr stringr xml2]; }; + RefManageR = derive2 { name="RefManageR"; version="1.2.0"; sha256="09l17mj9m4v1hhc71smqbk566axycwb0f5np2z11y4waqf09dwkc"; depends=[bibtex httr jsonlite lubridate plyr stringr xml2]; }; RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.2"; sha256="1g23paq42xiiqavikbrflwmr8ikls9z97v1xpgg16pb88svdyayc"; depends=[]; }; - RegularizedSCA = derive2 { name="RegularizedSCA"; version="0.5.3"; sha256="1d7rzvai36h7nmfvi6fdabba3rfa68x53li9jdrlk77mgpgr9vhw"; depends=[colorspace ggplot2 gtools lattice mice psych RGCCA]; }; + RegularizedSCA = derive2 { name="RegularizedSCA"; version="0.5.4"; sha256="1nw6hd9y2n1h3j1fqqkymz13xizv5xrsj93w702kkvkbwyl3yall"; depends=[colorspace ggplot2 gtools lattice mice psych RGCCA]; }; ReinforcementLearning = derive2 { name="ReinforcementLearning"; version="1.0.2"; sha256="1khk3yi0ixs4lzvng9pjmyyiy86bh5bx7wdyr915p1nbhq6yl2cl"; depends=[data_table ggplot2 hash]; }; RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; Relatedness = derive2 { name="Relatedness"; version="2.0"; sha256="1aidklwk8q2wdfsmhlbd3vzq9kzsyh4wn1g28biyb6lq7iwq1hl4"; depends=[]; }; @@ -3215,9 +3232,9 @@ in with self; { RenextGUI = derive2 { name="RenextGUI"; version="1.4-0"; sha256="0jfg4a85j06wxk8vq2q6j8md2kcss0s7k71218gfh9vybk7hl4h6"; depends=[gWidgets gWidgetstcltk R2HTML Renext]; }; Renvlp = derive2 { name="Renvlp"; version="2.5"; sha256="0zsvjqbbakbr5bcgwpbjl8ns7hqgkk9v8g9b9yx2mjbv8vg40pz2"; depends=[Rsolnp]; }; ReorderCluster = derive2 { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; - RepeatABEL = derive2 { name="RepeatABEL"; version="1.1"; sha256="00bq9ls4d0kczdv752xasqbavb11bjfvpriggfc8dw3g3i7pizpg"; depends=[GenABEL hglm]; }; RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; Replicate = derive2 { name="Replicate"; version="1.0.1"; sha256="110pvissyv3dx1wpwpngcg18mpmpml49gcmdykip55s1d3ljf791"; depends=[metafor]; }; + RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; ReporteRs = derive2 { name="ReporteRs"; version="0.8.10"; sha256="18ivgd3736zcrimcyzfkh5d6h9s1srh7xdz597y596dsssx1lmc6"; depends=[gdtools htmltools knitr png R_utils ReporteRsjars rJava rvg shiny xml2]; }; ReporteRsjars = derive2 { name="ReporteRsjars"; version="0.0.4"; sha256="0q11jcbkv9ibmkqr3mka0w5d797s8xb0155kcs5inlcacirp6wvy"; depends=[rJava]; }; ResistorArray = derive2 { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; @@ -3225,18 +3242,18 @@ in with self; { RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; - Rfast = derive2 { name="Rfast"; version="1.8.8"; sha256="0hbzkdi180l004y1l6v0nd6zp7rn45wx4ahaqnrm67pa366j500p"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; + Rfast = derive2 { name="Rfast"; version="1.9.0"; sha256="1v43vakp3bqka4k295imyl95f3hkvnpkbwj61gbm37yxamxvx0s4"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfit = derive2 { name="Rfit"; version="0.23.0"; sha256="1gxxipbh7mskrqwrpk1gf1dn8mp3l1v4hgmzii44bppffnxs7slp"; depends=[]; }; - Rfmtool = derive2 { name="Rfmtool"; version="2.0.0"; sha256="1a8s4a4mdblzy76ljslfvz8zav2639plhby0ib5ccjnpz2sxhc7s"; depends=[]; }; + Rfmtool = derive2 { name="Rfmtool"; version="3.0.0"; sha256="0hjy66b7d9xp4d8fzhs5zizvwlrdrmlmba2wf9fjraz5ysg0vnxv"; depends=[]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; Rgb = derive2 { name="Rgb"; version="1.6.1"; sha256="0qs3dlv4g45dqphqjm23ky3w6rxh8ff2q6b17kvf57skyf1b1yn8"; depends=[]; }; - Rgbp = derive2 { name="Rgbp"; version="1.1.2"; sha256="1g5v22zjgykzcg5jk7fi03xfn3jzz1yf38izjzhx2433d97hasr7"; depends=[mnormt sn]; }; + Rgbp = derive2 { name="Rgbp"; version="1.1.3"; sha256="1340h5rzb4631h6aanrdjl4x4l0h6l5x61qqmckrdf08fw2625lp"; depends=[mnormt sn]; }; Rglpk = derive2 { name="Rglpk"; version="0.6-3"; sha256="03v4cav465dkznm7d3bwwpx3qprhq25sp1rb5ncx2lka6inr1vzd"; depends=[slam]; }; Rgnuplot = derive2 { name="Rgnuplot"; version="1.0.3"; sha256="0mwpq6ibfv014fgdfsh3wf8yy82nzva6cgb3zifn3k9lnr3h2fj7"; depends=[]; }; - RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.1"; sha256="0fsmlnhl4kw2j4972kfanzw9njhnzk695gsyw8g6yppsmz2clcaq"; depends=[png]; }; + RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.2"; sha256="112mdm53qx92n2m4ms02sbppckp44l1z19vy99j6gw3jrdprjydl"; depends=[png]; }; Rgretl = derive2 { name="Rgretl"; version="0.2.2"; sha256="18jyp4bxs96ri1a4ifd52aj0q6kd2dygz8pkajbd9whq7bn5ick6"; depends=[lubridate png xml2]; }; - Rhpc = derive2 { name="Rhpc"; version="0.18-12"; sha256="095mrr6g05y9g8h88k1nf19zmjvg8hnmf5b3r6krqs4cxhp2qls2"; depends=[]; }; - RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.18-12"; sha256="14qypi76h73iv3xwbb860r4f7516jyb88j92lmkifw03x86lx2b3"; depends=[]; }; + Rhpc = derive2 { name="Rhpc"; version="0.18-185"; sha256="1clw2afvqx8bdz8f5fzqs0ybh95afp5n178hspp36awab34fpd9p"; depends=[]; }; + RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.18-185"; sha256="0s950rildshsnfny6kxfw3jls4i50rfmzbg1zma4ilbwswzp7kpq"; depends=[]; }; Ricetl = derive2 { name="Ricetl"; version="0.2.5"; sha256="0q87cxzqkkp2bk92q3wnxxsqlkafkd37lp5pki7f87a5vcxlcrak"; depends=[devtools gWidgets gWidgetsRGtk2 plyr readr readxl stringr tidyverse writexl]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; @@ -3252,27 +3269,25 @@ in with self; { Rknots = derive2 { name="Rknots"; version="1.3.2"; sha256="1krhma8hy3l5lbm6d8rxjlj9jw1zrd16h4wy4p1clfa5vlhh3bwi"; depends=[bio3d rgl rSymPy]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; Rlabkey = derive2 { name="Rlabkey"; version="2.2.1"; sha256="1nsaab7nysld1gdqnpxd9g68vzs363szyinbfn6j2c7ch0vqcrka"; depends=[httr Rcpp rjson]; }; - Rlda = derive2 { name="Rlda"; version="0.2.4"; sha256="01dh6x0yh9y7q8c8qy0zkkn2y18wzg5y90v4gcawdb1adz46izg2"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.0"; sha256="0nnkblrgycvfwn0lb9j92f5wpln69kk54z4irwi35rrfl31f689m"; depends=[Rcpp]; }; Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; Rlinsolve = derive2 { name="Rlinsolve"; version="0.2.0"; sha256="08ib0jjqicscn4mx5yv25q0x66iycx8jhazvjb47nqvn24mirprp"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo Rdpack]; }; Rlof = derive2 { name="Rlof"; version="1.1.1"; sha256="1px6ax2mr2agbhv41akccrjdrvp8a9lmhymp0cn8fjrib0ig8vql"; depends=[doParallel foreach]; }; - Rmalschains = derive2 { name="Rmalschains"; version="0.2-3"; sha256="1gh0f385s1nq12mk6a5l3nj1gd2mc6jzd66lisnxbcip25s4b8pb"; depends=[Rcpp]; }; - RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.16.1"; sha256="1z1i43imm0ch5ki7m5pxyjcxl280zmfzv8nizraf73zw852gzhb2"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; + Rmalschains = derive2 { name="Rmalschains"; version="0.2-4"; sha256="1rzslwwp6ikp3zky2zlqylsd8nmhv13iz2h87kwxfkh3611x28yk"; depends=[Rcpp]; }; + RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; Rmisc = derive2 { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; - Rmixmod = derive2 { name="Rmixmod"; version="2.1.1"; sha256="1m5yab7wq343bzg8xszbrlif3cd4d1x7xcqh82czkxbfni1gz7j7"; depends=[Rcpp]; }; + Rmixmod = derive2 { name="Rmixmod"; version="2.1.2"; sha256="06d8iwnjd9n4rfmcsnqzhi5ai0rxlc1qwij5s7ixkncq8c402a2k"; depends=[Rcpp RcppEigen]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; Rmosek = derive2 { name="Rmosek"; version="1.2.5.1"; sha256="0zggv699s93i9g98qjs4ci2nprgfkzq45lpzgrbhldsxiflf27gz"; depends=[Matrix]; }; Rmpfr = derive2 { name="Rmpfr"; version="0.7-0"; sha256="0jpj3nl76jd6vc2p1xwr8jl62q8ckwsdaxqnk9b20srkq63mfrig"; depends=[gmp]; }; Rmpi = derive2 { name="Rmpi"; version="0.6-7"; sha256="1b62gs7w1xqadqd7ir41jnxlcf14gcqfxd0915kn9ckdlsdrh0sw"; depends=[]; }; - RnavGraph = derive2 { name="RnavGraph"; version="0.1.8"; sha256="1fwzfy41gdr1aw1wg6dw04mxwwpp5s9x2inxyq3bc9s8bm1rlxih"; depends=[graph rgl scagnostics]; }; - RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.3"; sha256="1mrh0p2ckczw4xr1kfmcf0ri2h2fhp7fmf8sn2h1capmm12i1q8f"; depends=[]; }; + RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; RndTexExams = derive2 { name="RndTexExams"; version="1.4.1"; sha256="1gi96hfd7dkvmbvy6hj25g1l7nwk4yhxkdjx1l3ws3c2zpi27cvj"; depends=[CopyDetect data_table stringi stringr]; }; Rnets = derive2 { name="Rnets"; version="0.9.8"; sha256="0lcgapspl7ndrf3gxkrsv1172f2sv2587zaa1q6b950zympcvcj3"; depends=[data_table glasso igraph]; }; - Rnightlights = derive2 { name="Rnightlights"; version="0.1.5"; sha256="162n1k8dxd8g5ymwj59v8fkiflqhl2ik9mk1g8rf46dk84h0zflb"; depends=[cleangeo data_table doSNOW dplyr ff ffbase foreach gdalUtils lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings snow sp stringr xml2]; }; - Rnumerai = derive2 { name="Rnumerai"; version="0.2"; sha256="03qjrpi3hdbn8ni0ga57s3fsd2207mm34vl3p3n6y4vn15vg1k4n"; depends=[httr lubridate]; }; - RobAStBase = derive2 { name="RobAStBase"; version="1.0.1"; sha256="17vfi0ia3z3s6x7frjk1alcgb0h73gwxy2n11kfl0k8w2fxgk49l"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; + Rnightlights = derive2 { name="Rnightlights"; version="0.2.1"; sha256="07fd49i0cybnr5d14qf7d9p95frw8qjslrx9y2bwdrx89fvp0gk8"; depends=[cleangeo data_table doSNOW dplyr ff ffbase foreach gdalUtils lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings snow sp stringr xml2]; }; + Rnumerai = derive2 { name="Rnumerai"; version="0.3"; sha256="0zvfp9zp73gm6pflf9bx1xk1s45xwwvcd56cbris08d2zfj3b3nl"; depends=[httr lubridate]; }; + RobAStBase = derive2 { name="RobAStBase"; version="1.0.2"; sha256="10bbv9jjh6zznkzrlkx7dahahicab8ld11ah1mar2kz09bdz3kih"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.0.2"; sha256="1lyp2y38jnwv8ggrv9pdzprpf2gs62w1mpzwcqcbrmy7fzjsym0b"; depends=[]; }; RobLox = derive2 { name="RobLox"; version="1.0"; sha256="0y193xai0mfwpm6zhxgy21h4yrlqrpvwx84bj4xnr8ql87wznh7q"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; RobLoxBioC = derive2 { name="RobLoxBioC"; version="0.9"; sha256="0ia7vn8x8whyp8kl7mpwd6fd0yv0y3pb1mppnh2329x7xdvcs5j4"; depends=[affy beadarray Biobase BiocGenerics distr lattice RColorBrewer RobLox]; }; @@ -3280,12 +3295,12 @@ in with self; { RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; RobRex = derive2 { name="RobRex"; version="0.9"; sha256="0ii539mjq462n1lbnyv3whl8b1agvhvlz31wwyz911gb40isl639"; depends=[ROptRegTS]; }; Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; }; - RobustAFT = derive2 { name="RobustAFT"; version="1.4-1"; sha256="180gmlinrpnk4ghl1xickbjkdqr7vb6qzmy6701xpji5k8g9il60"; depends=[robustbase survival]; }; - RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.0"; sha256="1pkgwglnb68563hiirkagz33jfksbzj3cvdyv13brrzx6jzcvw11"; depends=[Rcpp RcppEigen RobustGaSP]; }; + RobustAFT = derive2 { name="RobustAFT"; version="1.4-3"; sha256="0x7sn2y9s6nwzlj8476irv893crwag6v4k7w3w589k33kkz5n2hp"; depends=[robustbase survival]; }; + RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.1"; sha256="0wsnvryvrl37acljrda2dm1d8aynqiy66yd2i857m035whixfpqa"; depends=[Rcpp RcppEigen RobustGaSP]; }; RobustGaSP = derive2 { name="RobustGaSP"; version="0.5.5"; sha256="0asxhzybpfmz3zzhr32hvcxrdmdsjlqjvxiihrxc8f4w3qwnzb82"; depends=[Rcpp RcppEigen]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; - Rodam = derive2 { name="Rodam"; version="0.1.2"; sha256="0fxsjzillr2v3sxbph13q3wrly6dx6m8rm276qzfvx1md044z14y"; depends=[RCurl]; }; + Rodam = derive2 { name="Rodam"; version="0.1.3"; sha256="0cfqrvvwkz4marmkxxl2ihi5gdbmr51q2r0sk1lkppa5drdh8cb5"; depends=[RCurl]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.2.0"; sha256="1kcbv8ibqh7jb3dpj4p73vd168c6vlwi08s9cshl4w6hqbz1pklg"; depends=[httr jsonlite R6]; }; Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.1"; sha256="11wybhw180r4zaqwfs301zwzfzprwwl4hiyhjj78l3mnxgdnmwz7"; depends=[doParallel foreach iterators]; }; @@ -3296,17 +3311,18 @@ in with self; { RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; Rphylopars = derive2 { name="Rphylopars"; version="0.2.9"; sha256="19y0j5vh82sa9jigylxhv0s0hgjyhx3xq4blvk55jhpj8v7iyiky"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; - Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.2.4"; sha256="1klianmsm3msgy5sbigxzx1mzsl915hmam6h2llr274r5gqhg4wh"; depends=[futile_logger R6 rgl stringr testthat XML]; }; + Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.2.5"; sha256="1q24vpbzig7pr7l3nk24vs8qb476l6mcb02v6sjk7md1hrysk34y"; depends=[futile_logger R6 rgl stringr testthat XML]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.0"; sha256="1s0jkq83vfc9jsggnwm31r366b10n6sri2vzpwxybzpjq3d3w5qr"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; Rramas = derive2 { name="Rramas"; version="0.1-5"; sha256="0wy0flzp68mikq4v9k5pv6hbzx0w9mpa74dwx79i3iiddn0ylby6"; depends=[diagram]; }; - Rraven = derive2 { name="Rraven"; version="1.0.2"; sha256="0mhf0vv58la1xh8vc31ak1wfi47zsqbjgxy7zz4bjk90g6110jyp"; depends=[doParallel dplyr foreach kableExtra pbapply pbmcapply vegan warbleR]; }; - Rrdrand = derive2 { name="Rrdrand"; version="0.1-15"; sha256="1i7snj33p44v43bz57x1887ing8h02xrf86rv7q0qijj198qf7dr"; depends=[]; }; + Rraven = derive2 { name="Rraven"; version="1.0.3"; sha256="076c7qki4whl6hb5918mdyn3iljgvd31c4c4lydbpwx0x0x1lxqn"; depends=[dplyr kableExtra pbapply vegan warbleR]; }; + Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; }; Rsampletrees = derive2 { name="Rsampletrees"; version="1.0.2"; sha256="1wz3dp1myjkxzf9l5mfli3dfbkc2fwg70xx7m9cxa06vq0a4w5pv"; depends=[ape haplo_stats Rcpp]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rserve = derive2 { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; + Rsmlx = derive2 { name="Rsmlx"; version="1.0.1"; sha256="1vzdzidi0i4gcpdmxcsfi6qh66wk20r9cw5s3y8fqd0nkdjlsagx"; depends=[ggplot2 gridExtra MASS RJSONIO]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.5.1"; sha256="09dsiic9bfy1yq7bwspidn6w21vff3jay8812abydz1l1fz4qv5i"; depends=[kohonen Rcpp]; }; Rssa = derive2 { name="Rssa"; version="1.0"; sha256="0alh0vq3qqzrn1kklqfp52qknasfq6yzk2dprz3g9pyq05qhmhlw"; depends=[forecast lattice svd]; }; @@ -3316,7 +3332,7 @@ in with self; { Rtextrankr = derive2 { name="Rtextrankr"; version="1.0.0"; sha256="16dby3xsfcjyp35xdflmgnh7zkqygfbffvj4jqa565vj9ksnq5ir"; depends=[igraph KoNLP sets stringi]; }; Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; Rtsne = derive2 { name="Rtsne"; version="0.13"; sha256="17crbdi80q4g2pwp9v7j3bdaznk96qlrqx01zvj3wwqippizyfqw"; depends=[Rcpp]; }; - Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.6"; sha256="18pi42n8zdrahwazcf553clqf0j1ngndb9vg5y71zcdwwphg7caf"; depends=[]; }; + Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.7"; sha256="12hf9r3mhjr9sawdvf7qhjf1zph2q64f77i81jwvy7awidbm0kja"; depends=[]; }; Rtts = derive2 { name="Rtts"; version="0.3.3"; sha256="0jphdpnpbq0d48kzflilxlh6psk282hi1hz3rmnwnd0rx5iyg624"; depends=[RCurl]; }; RtutoR = derive2 { name="RtutoR"; version="1.1"; sha256="132vyqkzjzwms9sbw6dmkqqk45si89r0xvy477xl98k14a2q4jlw"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes plotly ReporteRs rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; @@ -3330,7 +3346,7 @@ in with self; { Rwave = derive2 { name="Rwave"; version="2.4-8"; sha256="1rmqwyj2r84sii0vfqhyhpi3n1n1zia2ca627fq9ksvwn110nrvh"; depends=[]; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[lattice MASS MCMCpack mvtnorm]; }; - RxODE = derive2 { name="RxODE"; version="0.6-1"; sha256="1dkz6kq9wq7q2xw2wdzii5682w9f7rmgq28g7pfh8ivimfg1q4bi"; depends=[brew digest dparser inline magrittr Matrix memoise R_utils Rcpp RcppArmadillo rex]; }; + RxODE = derive2 { name="RxODE"; version="0.7.2-5"; sha256="04irzzv7n7jax1ricdwsmbw0gjn2x4d7cz7hg6y81qhjw4p8qgdi"; depends=[brew cli crayon digest dparser inline magrittr Matrix memoise mvnfast PreciseSums R_utils Rcpp RcppArmadillo rex]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="0.3-1"; sha256="13qvd5gpdrjgzf6isk3529khd02852y3ajmpp5vl8vn9k1jxp86v"; depends=[Rcpp XML]; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; }; @@ -3338,7 +3354,6 @@ in with self; { SACOBRA = derive2 { name="SACOBRA"; version="0.7"; sha256="12aj4ghs3i3ks749z0l95ipv8gi33xgggkyjf21zvnzmb1dgphys"; depends=[testit]; }; SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; }; SADISA = derive2 { name="SADISA"; version="1.0"; sha256="0v68k6pwcr2hfsffkcrvpgfwciwir2jsg3q1kvr0ka5iiizpliz3"; depends=[DDD pracma subplex]; }; - SAENET = derive2 { name="SAENET"; version="1.1"; sha256="13mfmmjqbkdr6j48smdlqvb83dkb34kx3i16gx0gmmafk3avdaxx"; depends=[autoencoder neuralnet]; }; SAFD = derive2 { name="SAFD"; version="1.0-1"; sha256="1h9hw66irq2c1ciz502r5h8h9hx32jwhrp9dwl91qlknlj6s1bxr"; depends=[]; }; SALES = derive2 { name="SALES"; version="1.0.0"; sha256="1kjmlwa4v2i7hzm947xby9jr0irsf4c851f7jyqyhqna9c65rx0g"; depends=[Matrix]; }; SALTSampler = derive2 { name="SALTSampler"; version="1.1.0"; sha256="1lh1w5kcx2sqv5czpfypdbq5mw7pxjbdk0vyg23zzjs26ynbdkn9"; depends=[lattice]; }; @@ -3347,7 +3362,7 @@ in with self; { SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; SAPP = derive2 { name="SAPP"; version="1.0.7"; sha256="0rms9kq87dypdfs248m4393lgpfx37qah0n1s109pfnjh3k64pm3"; depends=[]; }; - SARP_compo = derive2 { name="SARP.compo"; version="0.0.3"; sha256="1fn2rrd89qhz3vnz58xmmdjda70k474iyh4v1cmjfdam74fax7kh"; depends=[car igraph]; }; + SARP_compo = derive2 { name="SARP.compo"; version="0.0.7"; sha256="1z4md8qbk4k6akaxakf8njvn5mqpfzjclizvigyw41hwi03rxry3"; depends=[car igraph]; }; SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.8"; sha256="1hz5a2zjv8hrasjck981sqahq0l88b6ard1iwsfqznalva8zywbb"; depends=[]; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; @@ -3357,15 +3372,17 @@ in with self; { SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; }; SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; }; + SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; }; SCAT = derive2 { name="SCAT"; version="0.3.0"; sha256="1zgf4lwzgs0w3ynf6grs212mmmxihqz8cpwk65g08nna5mxzxq06"; depends=[]; }; SCBmeanfd = derive2 { name="SCBmeanfd"; version="1.2.2"; sha256="045498q71zqgcg8p3665vwd99a8ybf21y0sa7y8316zw66wb1caz"; depends=[boot KernSmooth]; }; + SCCS = derive2 { name="SCCS"; version="1.0"; sha256="0v1ycyx45jlv4y82q0kpcmmfcaaspmkk9nd89k6cfh24n6zf9j6w"; depends=[corpcor dummies fda gnm R_methodsS3 survival]; }; SCEPtER = derive2 { name="SCEPtER"; version="0.2-1"; sha256="19sphwcsj2z05dvpmz7vgxykzyghkfn79jwqvk6d66daman679mv"; depends=[MASS]; }; SCEPtERbinary = derive2 { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; }; SCGLR = derive2 { name="SCGLR"; version="2.0.3"; sha256="03v76nh6ng41hh4lm27r8ipf382sj98dyl9lh4fzl4y6ff1vwzzj"; depends=[expm Formula ggplot2 Matrix pROC scales]; }; SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; SCMA = derive2 { name="SCMA"; version="1.2.1"; sha256="17hn3axhmd6wchh1zmgrj026y5yhg6w68d1mif38rrf5cb2wwjnq"; depends=[]; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; }; - SCORPIUS = derive2 { name="SCORPIUS"; version="1.0"; sha256="1ipqscj20qkqik5gsiramsv18ld4k5g9w0gllf1izjimrlrnqc6n"; depends=[dplyr fitdistrplus ggplot2 magrittr MASS mclust pbapply pheatmap princurve purrr ranger RColorBrewer Rcpp reshape2 testthat tidyr TSP]; }; + SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.2"; sha256="01rg3c5i5wbdbkssmzr9x8chd9qm3ijdgvdh1cba6ry9y88f6ry5"; depends=[dplyr dynutils ggplot2 magrittr MASS mclust pbapply pheatmap princurve purrr ranger RColorBrewer reshape2 tidyr TSP]; }; SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; }; SCRT = derive2 { name="SCRT"; version="1.2.2"; sha256="1x6bzcgb5blavj4zdw4jam5r8yad3plyfzk31vz9pjv39784k229"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.2.1"; sha256="1ixy4ybw3c9w6q8csjv27r5f9x6988zrbr2a3yybhyw8xmkszc4v"; depends=[]; }; @@ -3373,16 +3390,17 @@ in with self; { SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.1.0"; sha256="1pknkda7iaq5247557b93kc3cf2ih7b3wpqpkqyfgfay3ci9kg16"; depends=[]; }; - SDLfilter = derive2 { name="SDLfilter"; version="1.0.0"; sha256="0g6cwpz1mzmcq16h34255sanqqwyb0a8dn6h043ksvnc91h2haa0"; depends=[data_table geosphere raster sp trip]; }; + SDLfilter = derive2 { name="SDLfilter"; version="1.1.1"; sha256="0z38lpalbmvc92fqya0zna2x74rlvqhqf08c48l4l9zwgvf0l6z0"; depends=[data_table geosphere ggmap ggplot2 ggsn gridExtra raster sp trip]; }; SDMPlay = derive2 { name="SDMPlay"; version="1.2"; sha256="0kafj5z1fi5d824h0n23qzn8a6n8fqm3bfc0pdfypzbaj2arjz3k"; depends=[dismo gbm raster SDMTools]; }; SDMTools = derive2 { name="SDMTools"; version="1.1-221"; sha256="1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"; depends=[R_utils]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; SDraw = derive2 { name="SDraw"; version="2.1.3"; sha256="179h5byh92dkycchalf875pwq1h4ryg3hba9fs7fbq4dshki5i7p"; depends=[deldir rgeos sp spsurvey]; }; + SEA = derive2 { name="SEA"; version="1.0"; sha256="1jcjgiy8459d8f603kiipcdq6d2awfcqzdv13hrdjgxpfnd1n1ha"; depends=[data_table doParallel foreach kolmim KScorrect MASS shiny]; }; SEAsic = derive2 { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECP = derive2 { name="SECP"; version="0.1-4"; sha256="0a4j0ggrbs0jzcph70hc4f5alln4kdn2mrkp3jbh321a6494kwl1"; depends=[SPSL]; }; SEER2R = derive2 { name="SEER2R"; version="1.0"; sha256="0lk0kkp8sv3nl19zwqd7449mmjxsj3pqpzdmqf70qf8xh2pqyvzd"; depends=[]; }; - SEERaBomb = derive2 { name="SEERaBomb"; version="2017.2"; sha256="0fjw8gjafhy6jdj4w9b4xj634gzpdnjbmn2dhhlfg3a7fqh4y91q"; depends=[DBI dplyr ggplot2 LaF mgcv plyr Rcpp reshape2 rgl RSQLite scales survival XLConnect]; }; + SEERaBomb = derive2 { name="SEERaBomb"; version="2018.1"; sha256="1nlxpifsjpkmb7pjr2hmzr5rsys93p7nmrpxfkfmljblfd80zj4a"; depends=[DBI demography dplyr forcats ggplot2 labelled LaF mgcv openxlsx plyr Rcpp reshape2 rgl RSQLite scales stringr survival tibble tidyr]; }; SEL = derive2 { name="SEL"; version="1.0-2"; sha256="1nrk0fx6ff330abq8askvp0790xnfv00m3sraqcr32hciw6ks421"; depends=[lattice quadprog]; }; SELF = derive2 { name="SELF"; version="0.1.1"; sha256="1yafjhxwsanr33dqy7w9x61ghldr29s8k6h68idq6nnfb77ghjyx"; depends=[bnlearn CompareCausalNetworks data_table Rcpp xgboost]; }; SEMID = derive2 { name="SEMID"; version="0.3.1"; sha256="0q2lbcfl5yq2kihdfyql5n74bpf4d8z8vjkqwnpwxzmpg5qa5q32"; depends=[igraph R_methodsS3 R_oo R_utils]; }; @@ -3393,32 +3411,34 @@ in with self; { SFtools = derive2 { name="SFtools"; version="0.1.0"; sha256="08k2ywkpk1pzp0qcwm7qx9gnv9hglspl9hrsrrfblagdpkw6rm2x"; depends=[doParallel ff wordspace]; }; SGCS = derive2 { name="SGCS"; version="2.6"; sha256="09czgfc0mg64qcigp36kjaf52zlmrpz3m2d1dp42d9hhlciliqf5"; depends=[spatstat]; }; SGL = derive2 { name="SGL"; version="1.1"; sha256="1wc430jqn3li102zpfmyyavfbab7x7ww9p89clxsndyigrrbjdr7"; depends=[]; }; - SGP = derive2 { name="SGP"; version="1.7-0.0"; sha256="0jjrrza8s6sj3gmmldnyxshfmcaf8xhp4g50vc3rcwnkg1jhzkg8"; depends=[Cairo colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats quantreg randomNames RSQLite sn toOrdinal]; }; + SGP = derive2 { name="SGP"; version="1.8-0.0"; sha256="02yh6kvc34gn33cbnhc5b86pmir1zbl6s875hangwb3qx7r13dx0"; depends=[Cairo colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames RSQLite sn toOrdinal]; }; SGPdata = derive2 { name="SGPdata"; version="20.0-0.0"; sha256="0fxv7nnxiaq6z9wii9x5qiy0vd2z8jw3gcwl5fj9m29ja7j3900g"; depends=[crayon data_table]; }; SHELF = derive2 { name="SHELF"; version="1.3.0"; sha256="0qhkp1ypbimiq9r8yv95bipbmhm7b38ibbk9nmhdckrr6ymd2w35"; depends=[ggExtra ggplot2 MASS shiny tidyr]; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; SI = derive2 { name="SI"; version="0.1.0"; sha256="11ywmyz4mamk30p4m9qvgmba237s1xvabablh91rwq13089x8nxm"; depends=[]; }; SIBER = derive2 { name="SIBER"; version="2.1.3"; sha256="14ab9zid0i400kj924m2y5qgp2iibnpllhqw11rlmdf8j9cr7858"; depends=[dplyr ggplot2 hdrcde magrittr mnormt rjags spatstat_utils tidyr viridis]; }; + SIBERG = derive2 { name="SIBERG"; version="2.0.2"; sha256="0wfx1dpjd09gb736sm2xhrkba26nwnzn5x575h39n2g33jwqqy2r"; depends=[mclust]; }; SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; SIDES = derive2 { name="SIDES"; version="1.11"; sha256="1gmhfj44qdklsdklmg8p35lmvlgla8i881i3iaziblslyscbyw9f"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SII = derive2 { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SIMMS = derive2 { name="SIMMS"; version="1.1.1"; sha256="1wgqz8zgijv5psz5r5zj9k63ikq5sr1dxqxvh48n2041slj6jdap"; depends=[doParallel foreach glmnet MASS survival xtable]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; - SIRItoGTFS = derive2 { name="SIRItoGTFS"; version="0.2.2"; sha256="1vjpnhpf8b3fwxgmmp7nljmk8js7sn2sn9ajlsgpmnww1bq4sh5f"; depends=[data_table dplyr easycsv reshape2 rgdal rgeos sp]; }; + SIRItoGTFS = derive2 { name="SIRItoGTFS"; version="0.2.4"; sha256="1hyhjwkv26fpplzqrdh41r8j91la5j0jidbwnh2vla6s3wf7jg47"; depends=[data_table dplyr easycsv reshape2 rgdal rgeos sp]; }; SIS = derive2 { name="SIS"; version="0.8-6"; sha256="1749ks5iqlj6lrn0hglifj1iy86dcpqz2pcnf1l798pa05rq8ngd"; depends=[glmnet ncvreg survival]; }; SISIR = derive2 { name="SISIR"; version="0.1"; sha256="08lw9y38j5qq00m2vcxsac97lg14j4w1y6607vw8isrb3qb5db9z"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; + SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; }; SKAT = derive2 { name="SKAT"; version="1.3.2.1"; sha256="0ylfz63xiq2zw9nc8nqr89qbhl3fnkhjgg9x7yxjm78vrn640hkl"; depends=[]; }; SLC = derive2 { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; }; SLDAssay = derive2 { name="SLDAssay"; version="1.8"; sha256="04ykj7s9kpvg5bmf7x16154kfpdy45b7y7hhyh31sxlscv7c5bbp"; depends=[]; }; SLHD = derive2 { name="SLHD"; version="2.1-1"; sha256="0y3ilxd0phmks8zkmpgw7p5zrkwq4k95h976cwk58pavvhfwj9kb"; depends=[]; }; SLICER = derive2 { name="SLICER"; version="0.2.0"; sha256="10i0hfl6js26n8xwk9pldzm9vv7hmii6gzj04lhqy0g3njds25kp"; depends=[alphahull igraph lle]; }; + SLIDE = derive2 { name="SLIDE"; version="1.0.0"; sha256="0x4fm29r7icg33k8gw3vqvxib8n9a1xwg484x9yffybips9ka22c"; depends=[]; }; SLOPE = derive2 { name="SLOPE"; version="0.1.3"; sha256="12naak08qjpn6l1ikqwf17h72zk4b5mppgxx7ks9wmnqy9ylhy3x"; depends=[Rcpp]; }; SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; }; SMCP = derive2 { name="SMCP"; version="1.1.3"; sha256="0ksx2ibz849vhrz2px9p7z8hlgvspz7kxhadvhk5mhkfbhrnpdf0"; depends=[]; }; SMCRM = derive2 { name="SMCRM"; version="0.0-3"; sha256="1x06w00sdijhg5h1s61q4ym5wgk97pw9md6api7if2cxjv7h5zcy"; depends=[]; }; SMFI5 = derive2 { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[corpcor ggplot2 reshape]; }; - SMIR = derive2 { name="SMIR"; version="0.02"; sha256="02q8m5m8lcfrpi78p3kajkps8wiir3jwyqc54j9vfx8aj6mk1v71"; depends=[]; }; SMLoutliers = derive2 { name="SMLoutliers"; version="0.1"; sha256="10frs7wcyn368m7fvw2f1cyd0xqr6sv5jziixnyvr8q5fadyl2p0"; depends=[]; }; SMM = derive2 { name="SMM"; version="1.0.1"; sha256="0g2blwcir0sxvqrivcyn9a8ssx34834lgcwrjwb6kcrq224dchws"; depends=[DiscreteWeibull seqinr]; }; SMMA = derive2 { name="SMMA"; version="1.0.2"; sha256="13psgrpljnaxpcq4amiyg5mqhpzmb2hyb7jzh3h8wyq18rvs3s4d"; depends=[Rcpp RcppArmadillo]; }; @@ -3426,12 +3446,11 @@ in with self; { SMPracticals = derive2 { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; - SNFtool = derive2 { name="SNFtool"; version="2.2.1"; sha256="0id8qvkvxvnlqn3wha45v457pr4061j35wcwlqwh03n0j549s84l"; depends=[heatmap_plus]; }; + SNFtool = derive2 { name="SNFtool"; version="2.3.0"; sha256="1yplcwmy7jhsvz19r82ivpxfqav7q88jcf8d0r2k8ll9iqmi1dbc"; depends=[alluvial ExPosition heatmap_plus]; }; SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; SNPassoc = derive2 { name="SNPassoc"; version="1.9-2"; sha256="113byj8zbg6xyxb1qzm76sqfyk3fap0sd90691zzm1x2pbfnb3mh"; depends=[haplo_stats mvtnorm survival]; }; - SNPknock = derive2 { name="SNPknock"; version="0.5.1"; sha256="0vp6nsa2ydfn6m7fwsgjwdzhvrwzjyv79n1fa5910lj1f0g5ijw2"; depends=[Rcpp]; }; + SNPknock = derive2 { name="SNPknock"; version="0.7.1"; sha256="0pfgmwn28bcfc45bx66gwhl5l7jsqhl3a9562rijrbjfjy4f4sln"; depends=[Rcpp RcppProgress]; }; SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; - SNPtools = derive2 { name="SNPtools"; version="1.1"; sha256="0l29kiqz4048x7amxx1qzkaw2xnd6lpdsdp5nq3rck9amx2hw64a"; depends=[Biostrings GenomicRanges IRanges Rsamtools]; }; SNSequate = derive2 { name="SNSequate"; version="1.3.1"; sha256="1w6yai79996pgg98skfb63kha8rqjzn751nmxg961rc4id1g8ysn"; depends=[emdbook knitr magic plyr progress statmod]; }; SNscan = derive2 { name="SNscan"; version="1.0"; sha256="1s7dxi7faih0phx5wk2xrrzhvfwicq3h2cg8x2klwbrslin973lz"; depends=[igraph poweRlaw Rmpfr]; }; SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; @@ -3442,25 +3461,25 @@ in with self; { SOLOMON = derive2 { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; }; SOMbrero = derive2 { name="SOMbrero"; version="1.2-3"; sha256="04vla01y3qagzpyr70mx9dgl0ihk9a9vh02896fr8kc9ch3sx6bd"; depends=[igraph RColorBrewer scatterplot3d shiny wordcloud]; }; SOPIE = derive2 { name="SOPIE"; version="1.5"; sha256="0isvb2vzzpn57bq0ix2pfaqdnl5z8qk6v6fvf15vnxcqg2sm63q5"; depends=[ADGofTest circular]; }; - SOR = derive2 { name="SOR"; version="0.23.0"; sha256="0djmz57g23xpzv6p8i71f3zrsc6xdgqkbcvn5cbx9m78n31ipkm5"; depends=[Matrix]; }; + SOR = derive2 { name="SOR"; version="0.23.1"; sha256="1accs4bqy080nfmgkdg7bgamdrcwcn01y6nydvvq12w3v8asdvwh"; depends=[Matrix]; }; SOUP = derive2 { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; SPA3G = derive2 { name="SPA3G"; version="1.0"; sha256="15f38imwqn1zifym2821q7xysvws9vhlif4g16w0pnvk0wlhyb92"; depends=[]; }; SPACECAP = derive2 { name="SPACECAP"; version="1.1.0"; sha256="11szdq7sqr8ldwz7apbf1dv5mh43rbyb7dkivms58s5623xrq3sm"; depends=[coda]; }; SPADAR = derive2 { name="SPADAR"; version="1.0"; sha256="0xzhcy5nglwx9j2jkm3i9xj1iw1y9wbf6rwfjyhpiwwq6qn8mn5r"; depends=[mapproj RCEIM]; }; SPARQL = derive2 { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; - SPAtest = derive2 { name="SPAtest"; version="2.0.2"; sha256="1h1qgjisd1kxw3644s5xmj212mnqkbfdzz9sa9wk4vb2dzv4660r"; depends=[]; }; + SPAtest = derive2 { name="SPAtest"; version="3.0.0"; sha256="0pq8mbj05x4l3lvdgayxigviirhx6ghf4w5bkpvg9hggkb79ib9y"; depends=[]; }; SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; SPCAvRP = derive2 { name="SPCAvRP"; version="0.2"; sha256="1kqx2mf75h491aj6rm923frpj1yl9c1p666cq3f1d7aa1k9byrzi"; depends=[MASS]; }; SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; - SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.5"; sha256="1m8als33k8db82pr9k8n4jk6i1dqimd9klw8xawwz7gzk1h31fsr"; depends=[]; }; + SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.6"; sha256="1py7vw1jfn9pf0xj1syyk7xv5593bilmzrb0p3iy85bks8iijlgx"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; }; SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; SPINA = derive2 { name="SPINA"; version="4.1.0"; sha256="0x7y150iq072qqci2niqk7j8pvhcylb7kdvwambg1r1gi3ffycm9"; depends=[]; }; SPIn = derive2 { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; - SPOT = derive2 { name="SPOT"; version="2.0.2"; sha256="17apfbsh4qv3yhv7jpmmyz7whwx4ilm0krspxyc4knm3yxxw26bp"; depends=[DEoptim MASS nloptr randomForest rgenoud rsm]; }; + SPOT = derive2 { name="SPOT"; version="2.0.3"; sha256="0xh2321611dyp8za5ydb92bx2kcrij0ah40lcx42s5ai31mackyl"; depends=[DEoptim MASS nloptr plotly randomForest rgenoud rsm]; }; SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; SPREDA = derive2 { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; @@ -3469,40 +3488,42 @@ in with self; { SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; SPreFuGED = derive2 { name="SPreFuGED"; version="1.0"; sha256="1cdamkrr0xpc0l2dypd9lgjidrmalfxs0ms7z3wfmf22a8b3y0d2"; depends=[Biobase boot CMA lattice limma lme4 mvtnorm]; }; + SQB = derive2 { name="SQB"; version="0.2"; sha256="11ccgf6bsnzfmqs92jl1ds09h2352qhjmwb88dvd7qww9admd0ig"; depends=[caret nnet pls rpart]; }; SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; }; SQN = derive2 { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; }; - SQRL = derive2 { name="SQRL"; version="0.3.0"; sha256="1d4wnm03a900gyhayxkrqpwyxmj8mbqadhi3bzqvi6wb01517a0r"; depends=[RODBC]; }; + SQRL = derive2 { name="SQRL"; version="0.4.0"; sha256="0wl4drma9nznqdbgb95wq2g12iy87g4s3h67n8dpxp7alx5lxy7q"; depends=[RODBC]; }; SQUAREM = derive2 { name="SQUAREM"; version="2017.10-1"; sha256="10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRRS = derive2 { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; }; SSBtools = derive2 { name="SSBtools"; version="0.2.1"; sha256="1cqdmvh9gxyx2yciy0j54v84hl8cayifv368ip5y3k6g1cff6488"; depends=[]; }; SSDM = derive2 { name="SSDM"; version="0.2.4"; sha256="1zn0iaav58pjzd6ckm28w16pblkjxacj2s1daj0sk0423dhjkf76"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard shinyFiles sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.4.17"; sha256="0c4w1fl199ksb63xxpawmld8bri9vcpbd2ypx5qrdfk4if5jhrrf"; depends=[MASS psych TSA TTR]; }; + SSDforR = derive2 { name="SSDforR"; version="1.4.18"; sha256="0ffy6gk94q4wlil4jhvc0y2pxim81vza517scly71zwp004381q3"; depends=[MASS psych TSA TTR]; }; SSL = derive2 { name="SSL"; version="0.1"; sha256="0fy6svf8xfni72bpsg8a5wr8ly46srhfixk8866lrcsp8pb6mqcd"; depends=[caret e1071 klaR NetPreProc proxy Rcpp xgboost]; }; - SSLASSO = derive2 { name="SSLASSO"; version="0.0-1"; sha256="045w4j9rqqmkp1am838isa9an30hlvc46w9fkpl0q6npk6fl9rws"; depends=[]; }; + SSLASSO = derive2 { name="SSLASSO"; version="1.1"; sha256="0zkzsdk568y9n9yj160i2vxgl570zvrfagwyafapypq5bz1cyjpi"; depends=[]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; - SSN = derive2 { name="SSN"; version="1.1.12"; sha256="1c2dx7d9izd4z76pvsbbfb0r1a6w45x96mv4vb9h99yafcw380nv"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; + SSN = derive2 { name="SSN"; version="1.1.13"; sha256="0hk138p1jnlda7d2wxlrf2ipkgliqlip1i5xp67aym979g0b3aaj"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; SSRMST = derive2 { name="SSRMST"; version="0.1.1"; sha256="15s6vcmk8a27yw3rlfkajby6qkizp4sfiyi63m7hc86svd15x4wg"; depends=[survival survRM2]; }; SSrat = derive2 { name="SSrat"; version="1.1"; sha256="1mmwla7yqqldv0s5hqljq2k2qljdfhq97m5128gvf3iy7n2yjzgj"; depends=[plyr sna]; }; SSsimple = derive2 { name="SSsimple"; version="0.6.4"; sha256="0p7d4hx7mhn5myq8ajcij6hhg79rjxigk5v8z93yfdw4gjcb5wad"; depends=[mvtnorm]; }; STAND = derive2 { name="STAND"; version="2.0"; sha256="07wrpmvk0jjlghvrb37xyai48vgzj0fby8y09qdxsxdlgwqg1f3s"; depends=[survival]; }; STAR = derive2 { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[codetools gss mgcv R2HTML survival]; }; - STARTS = derive2 { name="STARTS"; version="0.3-24"; sha256="13963x27y81ahwnhzghq3wadlkkq8k8mga2ap2knx5p980fj1jb7"; depends=[CDM LAM sirt]; }; + STARTS = derive2 { name="STARTS"; version="0.4-24"; sha256="0ghyan879i7jbzj228b604gfr91m5ybdszi3v8s7ix9yiqq518rw"; depends=[CDM LAM sirt]; }; STARTdesign = derive2 { name="STARTdesign"; version="1.0"; sha256="1q61l3v8ishzax3ppy0pz4ky4l46472l6j36hjlsa8cl01ik1zjf"; depends=[Rcpp]; }; STB = derive2 { name="STB"; version="0.6.3.1"; sha256="0fj1cfxqhijpxl41z799zd7id95jsb84ylrbqzrd1jlp80plyw83"; depends=[Matrix VCA]; }; STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; STMedianPolish = derive2 { name="STMedianPolish"; version="0.2"; sha256="0jzgcfhm09cccg2nwbvrmnkah1psbnmg26rc2n7lz26n4b20p3l2"; depends=[gstat maptools nabor reshape2 sp spacetime zoo]; }; STPGA = derive2 { name="STPGA"; version="4.0"; sha256="198h2wzhv5lnyqypn7s5lilywby2pq3zdx8vk4qd72bybfwwli2c"; depends=[]; }; + STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; STV = derive2 { name="STV"; version="1.0.0"; sha256="034d9qnvgmk97ah7r9w2hvnw39f7mxs2ml6y8dad94p8phl52gfw"; depends=[]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; - SUMMER = derive2 { name="SUMMER"; version="0.1.0"; sha256="14dq64h931l8r4pfhdg3i8wabb08n1fnnp8ql1bmhl1z4dqbggfl"; depends=[classInt ggplot2 maptools RColorBrewer sp spdep survey survival]; }; + SUMMER = derive2 { name="SUMMER"; version="0.2.0"; sha256="019yfw76jihk886990pivq1mzbbjbwpn7b4bvmacgbb9v6qrsl3b"; depends=[classInt ggplot2 maptools Matrix pixmap RColorBrewer reshape2 rgeos sp spdep survey survival]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2-8"; sha256="13d9v1l85md1v6qyfrdc3l36yanw5canskngjr1sh0hmyla182bz"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; SWATmodel = derive2 { name="SWATmodel"; version="0.5.9"; sha256="1i48g9nbjfn30ppwyzyz3k181nscv4wx773l8mzfdwhx0nlv4kyj"; depends=[EcoHydRology]; }; SWMPr = derive2 { name="SWMPr"; version="2.3.0"; sha256="1z6gg8ih1m5nxm1kilpwxj4xvlbyqr67la7idrfa722y6f6264rf"; depends=[data_table dplyr ggmap ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; - SWMPrExtension = derive2 { name="SWMPrExtension"; version="0.3.12"; sha256="1l79576a4v7kdgnb3skmakbfgnxfr069dn60v31x1fjq75k2lklq"; depends=[broom dplyr EnvStats flextable ggplot2 ggthemes leaflet lubridate magrittr maptools officer RColorBrewer rgdal rgeos rlang scales sp stringr SWMPr tidyr]; }; + SWMPrExtension = derive2 { name="SWMPrExtension"; version="0.3.16"; sha256="1dx1wxmrmkz4cq8av0fzl0ncwl3zyzbmlcakh8272989slgfv20x"; depends=[broom dplyr EnvStats flextable ggplot2 ggthemes leaflet lubridate magrittr maptools officer RColorBrewer rgdal rgeos rlang scales sp SWMPr tidyr]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.3"; sha256="1g00jzghvvhnj2npplh87bwbm479mwldskhard0vjlfmagbhjm8p"; depends=[FD permute RcppArmadillo vegan]; }; SafeBayes = derive2 { name="SafeBayes"; version="1.1"; sha256="09bhd3z9ia2mvpn1h0hil00j6cm4x9y9ymxc3gj8wd4ybdi3jqlm"; depends=[]; }; SafeQuant = derive2 { name="SafeQuant"; version="2.3.1"; sha256="0rgi0ij33sdvkpmjynfmsj0f29kl9l9ylsqckg5x4v49m6mzq1yh"; depends=[Biobase corrplot data_table epiR gplots limma optparse seqinr]; }; @@ -3513,12 +3534,13 @@ in with self; { SamplerCompare = derive2 { name="SamplerCompare"; version="1.2.9"; sha256="1fl9wgbfnkn2ai4swspl88crqpgd9b43hj8rkqkky4b49b8f6bj8"; depends=[mvtnorm]; }; SamplingStrata = derive2 { name="SamplingStrata"; version="1.2"; sha256="1qz0pcmp8a9wbq8qx1j2bv1j4makx97v9n4aiklagnmszg2gvggy"; depends=[memoise]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; + SanzCircos = derive2 { name="SanzCircos"; version="0.1.0"; sha256="0vw41qldp1gsj4mx2hdd5jfhx9r8pv62i8gvs86p6bvfzy2l1lq4"; depends=[dplyr pbapply purrr randomcoloR readr tibble tidyr]; }; Scale = derive2 { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[Hmisc MASS psych]; }; SchemaOnRead = derive2 { name="SchemaOnRead"; version="1.0.2"; sha256="0xa53mqmv31gid6n82bnfmds6p8nkjlmkj15hyycxhja2j752knm"; depends=[caTools foreign haven ncdf4 network readbitmap readODS readxl tiff xml2]; }; SciViews = derive2 { name="SciViews"; version="0.9-13"; sha256="11zkq3dz2c7l8qxm3wrr3b5bb9h70sf9qxaz983lqwpjva30baa8"; depends=[ellipse]; }; ScoreGGUM = derive2 { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; }; - ScottKnott = derive2 { name="ScottKnott"; version="1.2-5"; sha256="1ywwhdghcy30mp2nhsk2yhgb37nrdmb9yan5vvzsg66bchc3xgll"; depends=[]; }; - ScottKnottESD = derive2 { name="ScottKnottESD"; version="2.0.2"; sha256="08pg51rjvb29fhv8wx03q6ncfw616pszgpcdywkplbgab26rrx1q"; depends=[car effsize forecast reshape2]; }; + ScottKnott = derive2 { name="ScottKnott"; version="1.2-7"; sha256="0jxyz0adywfvz0mks5s3kjkb2hds1g0gswshpl73hr1ypr9n39cx"; depends=[]; }; + ScottKnottESD = derive2 { name="ScottKnottESD"; version="2.0.3"; sha256="0gjpjd8ljnp3v4fc72vhwjgscfw9vfivx710yg683pp30z0sv9nf"; depends=[car effsize forecast reshape2]; }; ScrabbleScore = derive2 { name="ScrabbleScore"; version="1.0"; sha256="19vgaxnhvqsbllqxfbnhnar2j4g0fkxi7rfsmkks2bd2py81x04m"; depends=[]; }; ScreenClean = derive2 { name="ScreenClean"; version="1.0.1"; sha256="0haanr05g4vwp5apncyzv8i3r61g4xf9ihm8ilcabcgpri56gpjk"; depends=[MASS Matrix quadprog]; }; SearchTrees = derive2 { name="SearchTrees"; version="0.5.2"; sha256="11p81x1klkmxarypxpbisf78dlrmhzzg9y9hxpwz75pks1y56gqg"; depends=[]; }; @@ -3534,10 +3556,12 @@ in with self; { Segmentor3IsBack = derive2 { name="Segmentor3IsBack"; version="2.0"; sha256="0c7ag9svd1xlm60padg41gvz7qnbcp41kg3cz2dvi9hy2yrqw0qd"; depends=[]; }; Sejong = derive2 { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6dhl23y16yxqzyhqqayvcm98q3l77nf"; depends=[]; }; SeleMix = derive2 { name="SeleMix"; version="1.0.1"; sha256="1qzy59wbjh8llm66l70xi0p3lv94iawh2h5vwa9sqy2ra5vmpaxk"; depends=[mvtnorm]; }; - Select = derive2 { name="Select"; version="1.3"; sha256="0gl0rba9d2l3r70wnxlc3d9s8lcgxl9scsb27x4zid5a3y7n7mpw"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; + Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; - SemiCompRisks = derive2 { name="SemiCompRisks"; version="3.0"; sha256="1f1rv48qpmgg0z25vmz48ziimj6bwnxlzf2k4i1xwb53qxxyysxw"; depends=[Formula MASS survival]; }; - SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.3"; sha256="1qfsy88bd07xk3gy2r7cjcs6fhx9889aqn1494d92msxmc6zvcz7"; depends=[MASS numDeriv Rsolnp]; }; + SemNetCleaner = derive2 { name="SemNetCleaner"; version="0.1.1"; sha256="0ry6lv33iynh1dy31zag5z36wr1limi8d7bbcjykcbgsbwcbazfj"; depends=[doParallel dplyr foreach ggplot2 magrittr NetworkToolbox plyr purrr qdap RColorBrewer tm]; }; + Semblance = derive2 { name="Semblance"; version="0.1.0"; sha256="11mpqfpv7i5nqyn9s63bfphj35sh4gx4hjy0gc22sfqn0lmvl132"; depends=[fields]; }; + SemiCompRisks = derive2 { name="SemiCompRisks"; version="3.1"; sha256="0m0primbkpjw4pmmabdgvp5l21aqfifnryga1rp2ng9cm5ncxxqg"; depends=[Formula MASS survival]; }; + SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.4"; sha256="1dj8gj04yfn0lj83b90b4p0ilgphmzcalz95xw7xgvivww8yj1dg"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive2 { name="SemiPar"; version="1.0-4.2"; sha256="0pa3drpvclkw81ji5m1h5arj5c2rh03dnlff97cnnr1v5kvg1i4w"; depends=[cluster MASS nlme]; }; SemiParSampleSel = derive2 { name="SemiParSampleSel"; version="1.5"; sha256="0apbg8sddz2ab9170wvf7p6cgawvp4w13r97r5q7p3hx2hylb8sw"; depends=[CDVine copula gamlss_dist magic Matrix matrixStats mgcv mvtnorm trust VGAM]; }; SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; }; @@ -3548,29 +3572,29 @@ in with self; { SensusR = derive2 { name="SensusR"; version="2.2.0"; sha256="0ahgy6mvlxfdavdarmfmb1ld1pykhbrjgg8mdh5q71b3a75vbp47"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; }; SentimentAnalysis = derive2 { name="SentimentAnalysis"; version="1.3-2"; sha256="18vycj9vpb32610sn321sbwdnjldyjm9idjw9spggdzj7gsiwwk3"; depends=[ggplot2 glmnet mgcv moments ngramrr qdapDictionaries SnowballC spikeslab stringdist tm XML]; }; SeqAlloc = derive2 { name="SeqAlloc"; version="1.0"; sha256="04rhr3gb2p9i35a3x4k8m0lv42ncfqlhx6sf3bq8yihppwrag8x3"; depends=[]; }; - SeqFeatR = derive2 { name="SeqFeatR"; version="0.2.6"; sha256="0y06am4q9cgf8cfycw9ym5qys0g99ks3cfxgk0mss34i5vhbfjfr"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags scales tcltk2 widgetTools]; }; + SeqFeatR = derive2 { name="SeqFeatR"; version="0.2.7"; sha256="0qg1zpamcbjia2q8900yzihahb0y7kc48smxipncf8bb68256pyv"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags scales tcltk2 widgetTools]; }; SeqGrapheR = derive2 { name="SeqGrapheR"; version="0.4.8.5"; sha256="041hlf64zbndz76r076pmym4dw4xl3fahryvpvjspw0sdlhmfm8c"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; }; SeqKat = derive2 { name="SeqKat"; version="0.0.6"; sha256="0idxyn84rqsg26y6ml218g037qxrx9755ikasyn212qacc36in39"; depends=[doParallel foreach Rcpp]; }; SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; SequenceAnalysis = derive2 { name="SequenceAnalysis"; version="1.3"; sha256="0jrpq5ryw7rwkv99w0a5p3r0vj8nbzj6adlcsr84d9ffgxafmhif"; depends=[XML]; }; Sequential = derive2 { name="Sequential"; version="2.3.2"; sha256="01zvgvdj57js08krskahk1ng3wkv9iblmirslgrmllf4q18zwsdr"; depends=[]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; - SetMethods = derive2 { name="SetMethods"; version="2.3"; sha256="10xzvr7xfv2vwa3byw4qb3v8gi8d36w9drjzqsxx52ffnjb95670"; depends=[betareg fmsb lattice QCA]; }; + SetMethods = derive2 { name="SetMethods"; version="2.3.1"; sha256="0a8d476slmq1dpimmr1l97k2icjwr907rw463c9dqba82a3p8k7g"; depends=[betareg fmsb lattice QCA]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="2.3.0"; sha256="0kp3lw1s896zkjd6x2wp8qcg7wnm5b40g8vihps13f1m7j4nx7r0"; depends=[ape caret cluster cowplot diffusionMap doSNOW dplyr dtw fitdistrplus FNN foreach fpc gdata ggplot2 ggridges gplots gridExtra Hmisc ica igraph irlba lars lmtest MASS Matrix metap mixtools pbapply plotly png ranger RANN RColorBrewer Rcpp RcppEigen RcppProgress reshape2 ROCR Rtsne SDMTools stringr tclust tidyr tsne VGAM]; }; + Seurat = derive2 { name="Seurat"; version="2.3.3"; sha256="0hfv4balzjjir8gdhrzb92ap36k6imq3igvb1nn0rhb0fq7959cr"; depends=[ape cluster cowplot diffusionMap doSNOW dplyr dtw fitdistrplus foreach fpc ggplot2 ggridges gplots hdf5r Hmisc ica igraph irlba lars lmtest MASS Matrix metap mixtools pbapply plotly png RANN RColorBrewer Rcpp RcppEigen RcppProgress reshape2 reticulate ROCR Rtsne SDMTools tidyr tsne]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="1.0.1"; sha256="18jzs0sq21qhldm86mgx7yb9kl473vv1aljl9hm4560xy5pd5fnb"; depends=[rgdal rgeos sp]; }; ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.3"; sha256="1vvfl1ldrn0l9w38hx0hhszvj5a2dpmfl6ljzw7f0ji181lrx96m"; depends=[coneproj raster rgdal]; }; SharpeR = derive2 { name="SharpeR"; version="1.1.0"; sha256="0qhvpwv81jznqfzm7xysm051ckv8ilq7zhsysxc7wripnlj01c4m"; depends=[matrixcalc sadists]; }; ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; }; - ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.2.6"; sha256="126rvy7pra60fz7pmc6n9liahhwrq313gbqrkvcpcwdv807l39c8"; depends=[corrplot CTT data_table deltaPlotR difNLR difR DT ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyjs stringr WrightMap xtable]; }; + ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.2.7"; sha256="0l350q6sy63m09fiamphhkc3hhlncqjn5r2w59gv2hwqnjhwhp2c"; depends=[corrplot CTT data_table deltaPlotR difNLR difR DT ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyBS shinyjs stringr WrightMap xtable]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; - ShortForm = derive2 { name="ShortForm"; version="0.4.0"; sha256="0fvv42n2dsl4602scad74w11vj1id9dzsj5szv7xnbgv8lzaawjm"; depends=[lavaan MplusAutomation]; }; + ShortForm = derive2 { name="ShortForm"; version="0.4.1"; sha256="0c2q3lhcyfn3w4iqknid9gav11nlycy9lma5m49vixksv7rf5kyw"; depends=[ggplot2 lavaan stringr tidyr]; }; ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.2.0"; sha256="1ybd8vm69y50lj2mkmcdyplxb689xfg4spbl129v8hlvhw69mzmy"; depends=[]; }; SiER = derive2 { name="SiER"; version="0.1.0"; sha256="1ng6vnh30z6z1nvclsdzc9gdbrsrb2kqdqvs6fwm0j1zqlk12x0y"; depends=[]; }; SiMRiv = derive2 { name="SiMRiv"; version="1.0.3"; sha256="1kzvbzmqcxs0sh23nmjd39zkg68kbnc5djpbjhqhn55qjdfx5776"; depends=[mco raster rgdal sp]; }; - SiZer = derive2 { name="SiZer"; version="0.1-4"; sha256="0kiwvxrfa2b49r2iab5v2aysc2yzk5ck3h41f2hr0vq5pdnz0qy5"; depends=[boot]; }; + SiZer = derive2 { name="SiZer"; version="0.1-5"; sha256="1ldl7rza58fzfbqidr1kanhfhy744nrsxrm13qdpxirdxx3vji6q"; depends=[boot]; }; SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; }; @@ -3580,11 +3604,12 @@ in with self; { SimComp = derive2 { name="SimComp"; version="3.2"; sha256="04rmpxasaa888p6f0rhhpvpqc39fppdkcwbq5sxcslx7bwc9w9z8"; depends=[mratios multcomp mvtnorm]; }; SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.5.0"; sha256="10afb3k4rvsmgfx6m1csb0pvnjba1d896llfh3ksmjzxglmvslgw"; depends=[evd]; }; - SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.0"; sha256="1fq1gjjjs2d91lvvpwlw1xqcr1kw10qzybzphpy6hniq1xx00nnj"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; - SimDesign = derive2 { name="SimDesign"; version="1.9"; sha256="1pwci1n7psrsv4mbl1mw3806cilmf3y9v507cdlzcd8jxl354vj7"; depends=[foreach pbapply plyr]; }; + SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; + SimDesign = derive2 { name="SimDesign"; version="1.10.1"; sha256="1g7nvzvmhkisl5bibigrsiv9s9xpigyib01vf05dhyc97f1vsg18"; depends=[foreach pbapply plyr]; }; + SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="5.1.0"; sha256="0ylkz6vybwza7fk24f4gybwm4afp0kcx0hlbl05jpif9gmwx6n3s"; depends=[Matrix]; }; - SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.1"; sha256="08zd9bvi3vi2nz3ljaw9rymmqwg1k9yislk3s4ak3jgqmcaq9zls"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; + SimInf = derive2 { name="SimInf"; version="6.0.0"; sha256="1bbmyqh367g4c6a2mnd78y08svaqyr96sj61wg1zn3n06892ilpg"; depends=[Matrix]; }; + SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; SimPhe = derive2 { name="SimPhe"; version="0.1.1"; sha256="00qqqsf7na5c9nslnfpbyr2ysf7d7bi6vnpfiy761nhg8vgf2vjv"; depends=[]; }; SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; }; SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.1.0"; sha256="1krdz4gxnqxj3wabc5hn7ayfqdfmpgg66zj09b3jnngcdaxkjlwb"; depends=[dplyr kinship2]; }; @@ -3593,14 +3618,14 @@ in with self; { SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; }; SimSeq = derive2 { name="SimSeq"; version="1.4.0"; sha256="068gg484w07qb4wajik2s3z79xfj0jg5l4pz69267dxi5kzd9fas"; depends=[fdrtool]; }; SimTimeVar = derive2 { name="SimTimeVar"; version="1.0.0"; sha256="1x0lkgqwx1vz1gbyvy0hx20n638n30j0dny1iz5vs0cvviq3cdv8"; depends=[car corpcor ICC metafor miscTools mvtnorm plyr psych]; }; - SimilaR = derive2 { name="SimilaR"; version="1.0.1"; sha256="1icm34g15c616q5ckf1d664kk6fchjbn4mw2d0bjshqsvlvn89ji"; depends=[BH Rcpp stringi]; }; + SimilaR = derive2 { name="SimilaR"; version="1.0.2"; sha256="0sj4gd9b1hds6qi8kl508cgzl5vp7d1m3l07swxlv5bqq5adz6gr"; depends=[BH Rcpp stringi]; }; SimilarityMeasures = derive2 { name="SimilarityMeasures"; version="1.4"; sha256="1w4klcln4hy9vcik9csg7b3b8kk4raxgckwfrhqg089d80xbqsxj"; depends=[]; }; Simile = derive2 { name="Simile"; version="1.3.3"; sha256="1izyjp18m1inac3svkf59z3lddrv44m7pdkhisgkr987xs8gdch4"; depends=[]; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; }; SimplicialCubature = derive2 { name="SimplicialCubature"; version="1.2"; sha256="1g7i31naczqf1hxmk1h5y9gq36rdfhf4al9xvwjgi9bj9zhfg3qp"; depends=[]; }; + SimplifyStats = derive2 { name="SimplifyStats"; version="1.0.1"; sha256="14ii4mq0bjj5xndj8vr760hcc9h9jn0nvzn58424wa5iz7j2vjmb"; depends=[assertthat broom dplyr moments tibble]; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; }; SimuChemPC = derive2 { name="SimuChemPC"; version="1.3"; sha256="06sxknaykikcgbw7qbbw1risg0sbaisb68vhfd7cl6sg0327dznk"; depends=[rcdk]; }; - SimultAnR = derive2 { name="SimultAnR"; version="1.1"; sha256="0jvmxwmbnx14h27b576dg9mw3c2z0w3m82f51f25zd1darcl06bj"; depends=[]; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; SixSigma = derive2 { name="SixSigma"; version="0.9-52"; sha256="07s4an2az2pgqhq9c08jrf6b95nrs1b3r1092d53n1ps8wbdmbln"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; @@ -3610,7 +3635,7 @@ in with self; { SkyWatchr = derive2 { name="SkyWatchr"; version="0.8-2"; sha256="0if44d79j2hlxdccn3jd7lrfbhrr09rfhfgds132syxprwkcb2mr"; depends=[htmlTable httr sp]; }; Sleuth2 = derive2 { name="Sleuth2"; version="2.0-4"; sha256="18mh1svmb96hw3rjmgxlwzs7kdcvjkxf4zm8k4w0sxz94ks062i7"; depends=[]; }; Sleuth3 = derive2 { name="Sleuth3"; version="1.0-2"; sha256="0b4g7j8a204wyvh0q9n1l4zrl9rk7ibyfijd49mjjdyg9zz4kbna"; depends=[]; }; - SmartEDA = derive2 { name="SmartEDA"; version="0.1.0"; sha256="1wxj71fa91q2nxnl8l5iikgw6bqwphp8ymcnqisll1kp1w5f2g22"; depends=[ggplot2 gridExtra ISLR rmarkdown scales]; }; + SmartEDA = derive2 { name="SmartEDA"; version="0.2.0"; sha256="0k89nvq074c2skjysw0n2cr410ki8f2p2fvzmwy779sgkbabc497"; depends=[data_table ggplot2 gridExtra ISLR rmarkdown scales stringi]; }; SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; }; SmartSifter = derive2 { name="SmartSifter"; version="0.1.0"; sha256="16rzma87k27qg6qy39mzywdj8pzkp7r9q7bpqyikazp3fk2nmfri"; depends=[mvtnorm rootSolve]; }; SmarterPoland = derive2 { name="SmarterPoland"; version="1.7"; sha256="03vs6hcd96va9kfhl2yq77alnm33j1dxy79kgrx17hlijsy65qqv"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; @@ -3623,29 +3648,27 @@ in with self; { SnowballC = derive2 { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; SobolSequence = derive2 { name="SobolSequence"; version="1.0"; sha256="1vmp5jix3zvasvdirv8m88jc0cd8f34b4m1jvhs8g3v9lk8pxrrr"; depends=[Rcpp]; }; - SocialMediaLab = derive2 { name="SocialMediaLab"; version="0.23.2"; sha256="1adl0h3vnw17c364bxm5wffjkmvfzz9l0w5wkpwi6ry96vxzwy40"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; }; SocialMediaMineR = derive2 { name="SocialMediaMineR"; version="0.4"; sha256="0hd05rm7qn2w8rqx7pw996wpgb2rymcwzmns8xyczcyn81vjx8z8"; depends=[httr jsonlite RCurl]; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; SoftClustering = derive2 { name="SoftClustering"; version="1.1502"; sha256="1pgg9mjpfw55m3ny726vx5wl8gwsdkrxv8xzgmy3aqdlwzhh4bwz"; depends=[]; }; - SoilHyP = derive2 { name="SoilHyP"; version="0.1.0"; sha256="030xzhd2mfibj4z3d73zplx814w9mpsf08bdllj6crqd9ipj4sbq"; depends=[]; }; + SoilHyP = derive2 { name="SoilHyP"; version="0.1.1"; sha256="10lwfmhiavfyzypdb2rpc0rjsphy84vzg8mrdkncircss45cbvyp"; depends=[]; }; SoilR = derive2 { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; }; SolveLS = derive2 { name="SolveLS"; version="1.0"; sha256="0yb2sx3wjhccmkq8p3jj5pp8dgsdfvv4hr88km5yajl950wkbizp"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; SorptionAnalysis = derive2 { name="SorptionAnalysis"; version="0.1.0"; sha256="0drns1ajcga5z56hcgjxld1riwjn7vli8k1ma1xqifpy1qwy7ci6"; depends=[]; }; SortableHTMLTables = derive2 { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[brew testthat]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; - SourceSet = derive2 { name="SourceSet"; version="0.1.0"; sha256="0vibh0v9j8sfsh8535g03q8m28881fagkkra8xxazf3zv5197p11"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; + SourceSet = derive2 { name="SourceSet"; version="0.1.1"; sha256="1326p28mngvi77b98n62cg6rln1qscyxz0616h7apc23ppdl7ybz"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; SoyNAM = derive2 { name="SoyNAM"; version="1.4"; sha256="0b48nm3xgvzws9222fmq07chqx4yllz4qjgzxg156s0waxfrjjfi"; depends=[lme4 NAM reshape2]; }; - SpATS = derive2 { name="SpATS"; version="1.0-7"; sha256="0gnv0hw5h4fin4vy6q8rjb1pry3c1vs0djkhbbkjvh52ycwlxjm7"; depends=[data_table fields plot3Drgl spam]; }; + SpATS = derive2 { name="SpATS"; version="1.0-8"; sha256="0j7yllnw9r8zhlh6jpkp5nsmzj0z3rzq0w6rkc36vp88a0giv15n"; depends=[data_table fields plot3Drgl spam]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; - SpaDES = derive2 { name="SpaDES"; version="2.0.1"; sha256="00l05kc7mgip41r8yqq3nk2mr5i0acal2b4man5lsgb5vblp4ij9"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; }; + SpaDES = derive2 { name="SpaDES"; version="2.0.2"; sha256="14l6rhaid4022c9gza6iy7kb6zr1844v16kn3hlgynf3zqv0mkr4"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; }; SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.1"; sha256="0sipgq00lacy7yk81crr8h7xfm4vs4h66w6rqsll8i7di19g13cj"; depends=[devtools magrittr miniUI rstudioapi shiny SpaDES_core stringi]; }; SpaDES_core = derive2 { name="SpaDES.core"; version="0.1.1"; sha256="12w2yr4q440n68p4gcj82h7gzjd240khfxjwxpngfbhbgp7rmv4b"; depends=[crayon data_table DEoptim DiagrammeR digest dplyr fastdigest fpCompare httr igraph lubridate quickPlot R_utils raster RCurl reproducible sp stringi]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.1.1"; sha256="0qfwcgy0nx4754zqi8fhk6q11yv9c5w6pa0wds6szga53hwwdi8g"; depends=[bit checkmate CircStats data_table digest fastdigest fastmatch ff ffbase fpCompare httr magrittr quickPlot RandomFields raster Rcpp reproducible sp]; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.2.0"; sha256="1xqydiswjg8dn57d0lmfll1ix6ca7w969swpyhwrqkh7x17q9bvg"; depends=[bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot RandomFields raster Rcpp reproducible sp velox]; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0"; sha256="1l204b8yd11pxwcb026xy39f4lps4sqk6mml8cybnjch8clk9djc"; depends=[Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; - SparkR = derive2 { name="SparkR"; version="2.3.0"; sha256="0dm4yqpppf2chpcsgsj812vx8mzgmwsc4jwkilrpgxfr6s54imgi"; depends=[]; }; SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; @@ -3657,16 +3680,17 @@ in with self; { SpatPCA = derive2 { name="SpatPCA"; version="1.2.0.0"; sha256="12b9ijbzzkhwrs7q0z5srawiskr3gdjvgdsrmsn4dhyqdzdbi8b6"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-2"; sha256="1nyxxwvlnhz78pw31dqijp1crlar5nak5934s4h0a4sajv9syif2"; depends=[]; }; SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; }; - SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.2"; sha256="172i4khjb2fh818bq7wdfdm79fwxjwi60nqfj69dgbgcaww55ffr"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; + SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.3"; sha256="0d0kyh591m3hvalqpbj67pynpb9v00kdx1idc5mw4p9hsbfs10xm"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; }; - SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-6"; sha256="14clsb7w7p39ak00127lfa7irl67vqydvafkj8vs8qn9i3kaj6iz"; depends=[fields maps]; }; - SpatialFloor = derive2 { name="SpatialFloor"; version="1.0.3"; sha256="14nbl0kb4c46kxvw900d972n78x6q0y9039l6p4r9w2i9ir7g1yh"; depends=[fields reshape2]; }; - SpatialNP = derive2 { name="SpatialNP"; version="1.1-2"; sha256="048zzyy3hav8qg0zad2fsv5z1avdppwwdcv0rc6j635wzhdmsl1j"; depends=[]; }; + SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-7"; sha256="1y0h1pcfqp9ynxsr3yrfbihlwm25ypyb88jmm5k2g7xvm8h9g050"; depends=[fields maps]; }; + SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; }; + SpatialNP = derive2 { name="SpatialNP"; version="1.1-3"; sha256="1azymigqychsydqvy2n5fplv971i1gzxfhfnclm5r5rqh0xcdp3k"; depends=[]; }; SpatialPack = derive2 { name="SpatialPack"; version="0.3"; sha256="12mx62drwqx351x4jfvv87rxr28ggz7iw83firkzr5xwfwfgr02c"; depends=[]; }; SpatialPosition = derive2 { name="SpatialPosition"; version="1.2.0"; sha256="140fg3bjj7383nrdbgnk9lccj4yjq65rkprqpmf4q0mwbc89mmqc"; depends=[raster rgdal rgeos sp]; }; - SpatialTools = derive2 { name="SpatialTools"; version="1.0.2"; sha256="0n8l4k0dm9gwirhxwrajv5gx502px9qzlqi6skzx0k32hmymnazh"; depends=[Rcpp RcppArmadillo spBayes]; }; - SpatialVx = derive2 { name="SpatialVx"; version="0.6-2"; sha256="12kwwhxlvlkss1rg9ipaw97l5kw50m7crpcpv1y420sf14873j7r"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; - SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[MASS Matrix]; }; + SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; }; + SpatialVx = derive2 { name="SpatialVx"; version="0.6-3"; sha256="0shh8b4l42h93ja6mshj2bwfz1g5j6wjwf3n3ql4yx7kc0n1y7sv"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; + SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.9"; sha256="1k674xb6q64w9izjb2mdippp6sfjnlqlq6ynmzmyi8m3pv3spga6"; depends=[MASS Matrix]; }; + Spbsampling = derive2 { name="Spbsampling"; version="1.0.0"; sha256="19ci3199hwqzh82phxr4m4d1n7y3vpn5338m20qisr7plwqv7wp5"; depends=[Rcpp Rdpack]; }; SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.7"; sha256="1v3v717ah2fkx9225860dwppdf5m6nnnaaa4iwmj30rn17nqr4jh"; depends=[gsubfn splancs]; }; SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; }; SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-2"; sha256="0dnya9mzkf48clp51jrnkz6lc4fps38nn3lap7n2wcp3dvbvdycg"; depends=[Rcpp RcppArmadillo]; }; @@ -3674,7 +3698,8 @@ in with self; { SphericalCubature = derive2 { name="SphericalCubature"; version="1.4"; sha256="14xrxhmhavz82rcixnyharnbrvdzs6rh7gbxihaxh431d90w2q3k"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; - SqlRender = derive2 { name="SqlRender"; version="1.4.8"; sha256="08q9h6aca7vzgy1ipvghvrspdvmzlgmvhjgibcn38lfyl09xyfas"; depends=[rJava]; }; + SqlRender = derive2 { name="SqlRender"; version="1.5.0"; sha256="0g9x7dkks9jcgfqz1zzkvgzgjlj2bvlbnpk1k6zc2lplxp7hgzf7"; depends=[rJava]; }; + Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; StAMPP = derive2 { name="StAMPP"; version="1.5.1"; sha256="0yyssscx3l4csban66gb4q35h37gf7pqvvycfsy56n96pnnlrgkf"; depends=[adegenet doParallel foreach pegas]; }; StMoMo = derive2 { name="StMoMo"; version="0.4.1"; sha256="1c4v2gjipq1y4crc6bqvz2x5c02bl10mh9jacg8dqb2dffsh5y44"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; }; StMoSim = derive2 { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[Rcpp RcppParallel]; }; @@ -3686,7 +3711,7 @@ in with self; { StanHeaders = derive2 { name="StanHeaders"; version="2.17.2"; sha256="11fcc59z63rkgk6pp5vhb5avjlbhbjs2v5mn496ai9jms4223ivc"; depends=[]; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive2 { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; }; - StatCharrms = derive2 { name="StatCharrms"; version="0.90.9"; sha256="1r11zzfzhps234nzkpxw0qw0phjcdww8dkh2l6z6qkvc4495x0zh"; depends=[cairoDevice car clinfun coxme gWidgets gWidgetsRGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; }; + StatCharrms = derive2 { name="StatCharrms"; version="0.90.91"; sha256="0gjxp6jz8j2kz87g17gax1pyrd498vcswrmv9az5dj52dvyxbwxf"; depends=[cairoDevice car clinfun coxme gWidgets gWidgetsRGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; }; StatDA = derive2 { name="StatDA"; version="1.6.9"; sha256="01bjygis14b3yfsfkjbvy0zlhjxysjf46cfcw8p4a4lwik3qp03b"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; }; StatMatch = derive2 { name="StatMatch"; version="1.2.5"; sha256="1162yqqrxkbpchdxdibpk5ccv55krvh9j150jgr047zzghr9ansa"; depends=[clue lpSolve proxy RANN survey]; }; @@ -3694,16 +3719,16 @@ in with self; { StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; + SteinerNet = derive2 { name="SteinerNet"; version="3.0.0"; sha256="1inm36mrxsiczh9i69gbx4d0y39ccgzrjkgdp3p2a1mv0dgzvwbi"; depends=[igraph]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; StepReg = derive2 { name="StepReg"; version="1.0.0"; sha256="1ifdns1fpsjcbwcy19h5hxnd3an53qwba2a7gpn2571zb1phraz8"; depends=[Rcpp RcppEigen]; }; - StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.5.9"; sha256="11lsjiry04m6yf4n1q0kniad6qdrj88pkziabi5glivijq0dh1wr"; depends=[Rcpp]; }; + StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; StereoMorph = derive2 { name="StereoMorph"; version="1.6.1"; sha256="1q0fif4azv8nd37smhmr61mr4fls1jpm1ky40aqlv6kjm336pn1c"; depends=[bezier jpeg png Rcpp rjson shiny svgViewR tiff]; }; - Stickbreaker = derive2 { name="Stickbreaker"; version="1.0.0"; sha256="11g97yj61s09d1687algr9f80gcgw8fadc1vbadglxh7l9wxj6lv"; depends=[lattice nnet xtable]; }; StockChina = derive2 { name="StockChina"; version="0.3.1"; sha256="1myxyfchnkskyqb5yciw1wfk3006f51y89ipzfjzdlfyzwy1lsp1"; depends=[]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.2"; sha256="1r8avm9xajqmsy4x7pgh1yaffq7wl5i5kg75kdilydwmii6n19i0"; depends=[]; }; - StratSel = derive2 { name="StratSel"; version="1.2"; sha256="11dkhyh0xgl23f9ksxcjl6bqfhwm6k6i1chgx23dvjifbm6s5s5p"; depends=[Formula MASS memisc mnormt pbivnorm]; }; + StratSel = derive2 { name="StratSel"; version="1.3"; sha256="0hd6q8s8aiymcd33kv0gd0a4wzr86xxdzwn18jgpyk9q8pmg8gvl"; depends=[Formula MASS memisc mnormt pbivnorm]; }; Strategy = derive2 { name="Strategy"; version="1.0.1"; sha256="0phja1r0qfvcswvw5w1x6ny86p84wkqb029fdqgw10djdm9xp0f2"; depends=[xts zoo]; }; StratifiedBalancing = derive2 { name="StratifiedBalancing"; version="0.2.0"; sha256="0iwzvschncb2vrmsawb6i94shn2cjbkph854x1z4ykr6ddw411g2"; depends=[plyr]; }; StratifiedRF = derive2 { name="StratifiedRF"; version="0.2.2"; sha256="0a5djia6xacs17nnr5knr1acwzicrffz73q9nvnhdmihazq8v27d"; depends=[C50 dplyr]; }; @@ -3711,7 +3736,7 @@ in with self; { StressStrength = derive2 { name="StressStrength"; version="1.0.2"; sha256="1fq26bzmwsk4nzz9bgasyxz9alw8x2ssahz67mham7vw483w79pd"; depends=[]; }; String2AdjMatrix = derive2 { name="String2AdjMatrix"; version="0.1.0"; sha256="058r30kjjna02nmd6ngqfcnn1yk5390i20xvl6qb5qk3bcp2wmxn"; depends=[stringr]; }; StroupGLMM = derive2 { name="StroupGLMM"; version="0.1.0"; sha256="1w0xizdmwqflfhqwygyq7fw5ci7pdzmr8dfv3j0g3ljbj84kndzd"; depends=[aod broom car ggplot2 lme4 lmerTest lsmeans MASS mutoss nlme pbkrtest phia survey]; }; - StructFDR = derive2 { name="StructFDR"; version="1.2"; sha256="00h3mx7kf01snngkcarhyidqiycvnjhcs81x3kprgp6597md7ph1"; depends=[ape cluster dirmult matrixStats nlme]; }; + StructFDR = derive2 { name="StructFDR"; version="1.3"; sha256="1y0wj7y36iq0lznc4qpsr2yis3an34iilpabkaxxmas2q4abg0qb"; depends=[ape cluster dirmult matrixStats nlme]; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; SubTite = derive2 { name="SubTite"; version="2.0.3"; sha256="1i95f3x1nkhx9kqzxwvi15x6yq7mcdihzjxh60la6jvq5nscfi3l"; depends=[Rcpp RcppArmadillo]; }; @@ -3728,10 +3753,11 @@ in with self; { SuperRanker = derive2 { name="SuperRanker"; version="1.1.0"; sha256="19cfz89557ygf5dvvqykmxcr72sfa0s2d37pplp6iwbhkl4wfw04"; depends=[prodlim Rcpp]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.4"; sha256="1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="0.1.0"; sha256="0cw2nsqc9dx36svb49pqkmrxwk5hhbih206mwwkzfyavswxd2lpv"; depends=[gstat gtools raster rgdal rgeos sp]; }; - Surrogate = derive2 { name="Surrogate"; version="0.6"; sha256="18cqcnzf64wk33qshsamija0r9xpnca0w2a8qz1ikj9r21vabhhw"; depends=[lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms survival]; }; + Surrogate = derive2 { name="Surrogate"; version="0.9"; sha256="10prqish36nvkipmagqqr5whq2qhy26nlm636i4kyj2iw3139xzg"; depends=[lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms survival]; }; SurrogateTest = derive2 { name="SurrogateTest"; version="1.0"; sha256="0dw8ic2rskwhj9f013q0j5my7qfsqihfis93frrlz4qag68jddqn"; depends=[survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; - SurvDisc = derive2 { name="SurvDisc"; version="0.1.0"; sha256="0iqjimrljh9iaw3s406v6j03xg62ysf9xdia1yxr2ray38j8148c"; depends=[cubature MASS mvtnorm nlme simex survival]; }; + SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; + SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; }; SurvLong = derive2 { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; }; SurvRank = derive2 { name="SurvRank"; version="0.1"; sha256="1i08yjprzd9irs46rifa5fsmmhwbsf4py0m8qp5rprznyr8504y3"; depends=[doParallel foreach ggplot2 glmnet gplots ipred mboost randomForestSRC reshape rpart sampling survAUC survival]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.4"; sha256="0ipr7lajnrklk963lrlgx946l6r191q3bfif4njkdmw0x797nzm2"; depends=[numDeriv survival]; }; @@ -3746,13 +3772,12 @@ in with self; { SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; SyncRNG = derive2 { name="SyncRNG"; version="1.3.0"; sha256="0sywfmmy6mq6qsxkxjc67665snn1jds01j3h7ni1200igja139g2"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; - SynergizeR = derive2 { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RCurl RJSONIO]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; - TAM = derive2 { name="TAM"; version="2.10-24"; sha256="1ax7b7q4slwcjamapbmnaaahrwdhrcbasjjgycdk5d7gzrzyygnx"; depends=[CDM coda MASS mvtnorm Rcpp RcppArmadillo sfsmisc]; }; + TAM = derive2 { name="TAM"; version="2.12-18"; sha256="1mbhf5ni2a1mlyh8qa7id3p0h1baqigmh5ch2yf18h8mn52ig47i"; depends=[CDM coda MASS mvtnorm Rcpp RcppArmadillo sfsmisc]; }; TANDEM = derive2 { name="TANDEM"; version="1.0.2"; sha256="1h6m6aq2b5m9gdy4nck4dxv75gv50pfdhxx8xifgyv0d7n8czabq"; depends=[glmnet Matrix]; }; TANOVA = derive2 { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; - TAQMNGR = derive2 { name="TAQMNGR"; version="2016.12-1"; sha256="1b3v30zi6ssac866grhgki2bpzbk06pd8vrfya3zcc5anry699bm"; depends=[Rcpp]; }; + TAQMNGR = derive2 { name="TAQMNGR"; version="2018.5-1"; sha256="0bf0sgqa53l9y2bhwg2ngiwlcgrmj0nvxchlsmcc8zin388qf4pb"; depends=[Rcpp]; }; TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; }; TBEST = derive2 { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; }; TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.1"; sha256="0cwga4pkfz4azm62v54jql07ymkhm97wyccz4gg6mhwy4qzigyjq"; depends=[nnet plotrix stringr VGAM]; }; @@ -3760,12 +3785,14 @@ in with self; { TCGA2STAT = derive2 { name="TCGA2STAT"; version="1.2"; sha256="15a5lh0nrdcxdwj7wj5m9rsvk1ygpp6wdjb4swilk91rb1lblikv"; depends=[CNTools XML]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.3"; sha256="0mi8j7k2b1sx75ka8ympydqpk8jqp8wz8dyf4vk4776fra7bq24p"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.2"; sha256="1fgjmz297jckdb0xsly1scq5n8y8awfgdkr4yfml4lim2mkdsigx"; depends=[httr jsonlite]; }; + TDA = derive2 { name="TDA"; version="1.6.2"; sha256="1vkb4d3ayw8y4iskd6y1y9hnp0baidaxiqjqydxv2jwkdx0x9c3z"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; + TDMR = derive2 { name="TDMR"; version="2.0"; sha256="1dqyi7i4spacg0n6f3zdhyb84crlbqvkb8xdmvdjr1jd1zx5gc32"; depends=[adabag SPOT testit twiddler]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="0.99"; sha256="1kyhs4rpkm3gr55l6hrz4xcb9igk95si1m1sp175580k16n885z0"; depends=[plyr]; }; TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; - TE = derive2 { name="TE"; version="0.1-1"; sha256="05xm9hlcsrcqa3yfw1rp4fb08yjkp66lcvdpw3a3fnx7k69j5p3g"; depends=[MASS rainbow]; }; + TE = derive2 { name="TE"; version="0.2-2"; sha256="1yy6ky11ijnnkz2a4g6lww870pb4himn9nx230jnxpr0q8nsfqpb"; depends=[MASS rainbow]; }; TED = derive2 { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vhkr1f3vlym2hqs0pq0lnsl4g0"; depends=[animation fields foreach geoR RcppArmadillo zoo]; }; TEEReg = derive2 { name="TEEReg"; version="1.1"; sha256="0v5qz3vvmcm3fh16kjb05j1r0yj23r7hrxf2www20ng3dmga5q0f"; depends=[]; }; TELP = derive2 { name="TELP"; version="1.0"; sha256="0wzm3dz0489ha7dd6lkashvvjydck9jw2pavlx9plpksvzr4q9ph"; depends=[arules arulesViz ggplot2 gridExtra RColorBrewer tcltk2 tm wordcloud]; }; @@ -3774,7 +3801,7 @@ in with self; { TESS = derive2 { name="TESS"; version="2.1.0"; sha256="05xsz2v847pwj4ja7hmg3zfbfqrwwzpf0ri0gjzb8snm2a7xm23y"; depends=[ape coda deSolve Rcpp]; }; TExPosition = derive2 { name="TExPosition"; version="2.6.10"; sha256="12rgijlclaipwjjiyng7nwilzixdy6lsvncigcg0vjydhgk97jn1"; depends=[ExPosition prettyGraphs]; }; TFDEA = derive2 { name="TFDEA"; version="0.9.8.3"; sha256="0qg4nhlqqj7hc8lg732zz8klbbp3yksnq8q8n4ml3jz8gadrpyj7"; depends=[lpSolveAPI]; }; - TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.6"; sha256="1892jmgqywm0jp5l5k88brp4h8szkbi9bxi0v1jni1929qnsmqyf"; depends=[Rcpp]; }; + TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.8"; sha256="0h9qkl15k8v17v3g9bdnfwvh2s04ywjgg5y0xn2077dmywlja1bd"; depends=[Rcpp]; }; TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; }; TFisher = derive2 { name="TFisher"; version="0.2.0"; sha256="0vz74ww1lf1prfwz74hfsi3a8nzq8ss7aqjr85c1d87vss2796xx"; depends=[Matrix mvtnorm sn]; }; TH_data = derive2 { name="TH.data"; version="1.0-8"; sha256="17csnwyk2f3d47nghkfy9wly5kff8zhdcfwfml7509hjrjgi13s7"; depends=[MASS survival]; }; @@ -3785,33 +3812,33 @@ in with self; { TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.2.1"; sha256="1xgkbdnh79dj54jg5kf0c5kwykcvjaf4y16yyqf0vcc7aand6a3y"; depends=[hypergeo Rcpp]; }; TLdating = derive2 { name="TLdating"; version="0.1.3"; sha256="12lmakk1zd6wqh1318pnl14i7km2hynjn4ymchfjr2bwmp45c1ra"; depends=[gplots Luminescence]; }; - TMB = derive2 { name="TMB"; version="1.7.13"; sha256="1cbm8vgjfd00678h011jzf0zjkvbv427nkp0924g2xmiai6c15xc"; depends=[Matrix RcppEigen]; }; + TMB = derive2 { name="TMB"; version="1.7.14"; sha256="0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; TOC = derive2 { name="TOC"; version="0.0-4"; sha256="1c16d4wrzir6v3c323sck6r9yz6mv1a70xamlj5ha1ydmfixcza9"; depends=[bit raster rgdal]; }; - TOSTER = derive2 { name="TOSTER"; version="0.3.2"; sha256="1sfb01cvm9h3gd2x3bs8014czlgbnnwl5gy4frknz3b9qyazi2cy"; depends=[ggplot2 jmvcore R6]; }; + TOSTER = derive2 { name="TOSTER"; version="0.3.3"; sha256="1b1zmg0klf26hajlf420vpf8yf47np2l6ccl6062jmakg37ngh00"; depends=[ggplot2 jmvcore R6]; }; TP_idm = derive2 { name="TP.idm"; version="1.5"; sha256="07rxn0mpar3p6blg8fd3kbvdngyz9h9n0r0lcljnfdajfzbysv7h"; depends=[]; }; - TPD = derive2 { name="TPD"; version="0.1.2"; sha256="1h8lgcrlsk68x2y01vgcn7dpq5q5180khz4csr8jbscbcdwljcl9"; depends=[ggplot2 gridExtra ks mvtnorm]; }; + TPD = derive2 { name="TPD"; version="1.0.0"; sha256="1fwj5l519mwsffm2pw2nbpm1mnlxkxzl53i7sqy810fccw47hgag"; depends=[ggplot2 gridExtra ks mvtnorm]; }; TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; }; TPmsm = derive2 { name="TPmsm"; version="1.2.1"; sha256="1vynzb6qpp8785rdjyarhvwbkasviamhljjlnp4i0dds96wwdgx1"; depends=[KernSmooth]; }; TR8 = derive2 { name="TR8"; version="0.9.18"; sha256="14nfyqwqv1l5lr5zvywd5pxrv4qz0g5v5x8sdxkjbkxi9s7xrlaw"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; TRAMPR = derive2 { name="TRAMPR"; version="1.0-8"; sha256="0nxp8wdr7yx94fk14m0r4dh2jxcvjqp6lg02092zww5y7jlbf4ds"; depends=[]; }; TRD = derive2 { name="TRD"; version="1.1"; sha256="0bhn4bcrq39f5dgqc74jqsfhs1iqfxhawacqqyncbk2372013nqp"; depends=[Rlab]; }; - TROM = derive2 { name="TROM"; version="1.2"; sha256="1gfnlchaa16q9cksrgdkissy2fz481bcbac0cmxnc4vb0vbnz4h5"; depends=[AnnotationDbi GO_db gplots gtools lattice openxlsx RColorBrewer topGO]; }; - TRSbook = derive2 { name="TRSbook"; version="1.0.1"; sha256="1w2yl5pchw2vn9l3qnm1ra9mjy946i5xsxh5n5xdvrcj2kak50x5"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; - TSA = derive2 { name="TSA"; version="1.01"; sha256="0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"; depends=[leaps locfit mgcv tseries]; }; + TROM = derive2 { name="TROM"; version="1.3"; sha256="1glbpbq8qhlxhcscgsqivmncsmadfhlsin47r9jxxd2s087cdh2f"; depends=[AnnotationDbi GO_db gplots gtools lattice openxlsx RColorBrewer topGO]; }; + TRSbook = derive2 { name="TRSbook"; version="1.0.2"; sha256="0lj20i6gybinc196nzjfi6ayzmm970s9vp43lj60v96g5dl7qv1b"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; + TSA = derive2 { name="TSA"; version="1.2"; sha256="0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q"; depends=[leaps locfit mgcv]; }; TSCS = derive2 { name="TSCS"; version="0.1.1"; sha256="0dllaw69rl26hgqac5q66k13gfmnxhn3wf0j8nx5xvi7yclzc3ay"; depends=[ggplot2 rgl tseries]; }; - TSEtools = derive2 { name="TSEtools"; version="0.1.0"; sha256="16wrlbgq4xli49hha0bsg4nrv33jy0sd0d6nnzvfiqaqw8jml3rs"; depends=[xts]; }; + TSEtools = derive2 { name="TSEtools"; version="0.1.1"; sha256="1s39j41s5d9zakvr536l7m9f72yjh3cbfpd6pijvcr3n3dznmra9"; depends=[xts]; }; TSF = derive2 { name="TSF"; version="0.1.1"; sha256="0v3pq64yknp3n6lw6c87slv1avsv7rlb82gm670q4jzv5d174phv"; depends=[forecast fracdiff]; }; TSGSIS = derive2 { name="TSGSIS"; version="0.1"; sha256="0zrlin6xi6sv5qb18a0wi8lzldqlwa9lbwnra44w3jza3kakff7n"; depends=[glmnet MASS]; }; TSHRC = derive2 { name="TSHRC"; version="0.1-5"; sha256="05vv2zdkzlg04dicwa0lyww92fiafr7bnvsbm6990xkip1lf3cih"; depends=[]; }; TSMN = derive2 { name="TSMN"; version="1.0.0"; sha256="12wgcc7szbcbk3d1a17wz96rlwp5l39cn0i03hjsb0sbrs7mjwg5"; depends=[]; }; TSMining = derive2 { name="TSMining"; version="1.0"; sha256="1n32acagffiw31pr485ly3phx33zw7vj009bvw4lbqpixa1pszj2"; depends=[foreach ggplot2 plyr reshape2]; }; TSMySQL = derive2 { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[DBI RMySQL tframe TSdbi TSsql]; }; - TSP = derive2 { name="TSP"; version="1.1-5"; sha256="03xxfr5kk4zhzpb1q1pwncdp0dhchm9b48wzhvvxn2dxf3mnby2w"; depends=[foreach]; }; + TSP = derive2 { name="TSP"; version="1.1-6"; sha256="1ym97xl2icjpfkrici0wig29w06bb704hp51v7h5liygjlwpkhlc"; depends=[foreach]; }; TSPostgreSQL = derive2 { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[DBI RPostgreSQL tframe tframePlus TSdbi TSsql]; }; - TSPred = derive2 { name="TSPred"; version="3.0.2"; sha256="0cbf5h3yrissng4xqrgbisarml772mg6b2ap508imf29zfks76gn"; depends=[forecast KFAS MuMIn]; }; + TSPred = derive2 { name="TSPred"; version="4.0"; sha256="0zjx33llkvvj7m4z16crybw0y6s6zvlblxn2in3j7v9cv0ihhsa8"; depends=[EMD forecast KFAS MuMIn vars wavelets]; }; TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.2.13"; sha256="0wbwkhc1b5dql87sj1441cknidpgwcflwlid2yj6d64a6wsipn1l"; depends=[bfast broom ggplot2 RcppRoll strucchange]; }; TSSQLite = derive2 { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; }; TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; }; @@ -3826,7 +3853,7 @@ in with self; { TSfame = derive2 { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[DBI fame tframe tframePlus tis TSdbi]; }; TSmisc = derive2 { name="TSmisc"; version="2016.8-1"; sha256="0xvn6qlvvdc65l356r8b5ppddjd35k9fc4b5w5wn3j5wzxfllbk1"; depends=[DBI gdata quantmod tframe tframePlus TSdbi tseries zoo]; }; TSodbc = derive2 { name="TSodbc"; version="2015.4-1"; sha256="0m6r97gs483jg6jlmfkbzxg3jvf6q140kvpidjccj224zb1sqlcq"; depends=[DBI RODBC tframe tframePlus TSdbi TSsql]; }; - TSrepr = derive2 { name="TSrepr"; version="1.0.0"; sha256="1r2704zx9mk5w9k98labslp9wqj23jgn28k5jl31lvwcqgj5qqpv"; depends=[dtt MASS mgcv quantreg Rcpp wavelets]; }; + TSrepr = derive2 { name="TSrepr"; version="1.0.1"; sha256="07gxsp4cfzpjmm6l9wpcdxar3sngm0ih0gp4c8gb6kyzm7pb780n"; depends=[dtt MASS mgcv quantreg Rcpp wavelets]; }; TSsdmx = derive2 { name="TSsdmx"; version="2016.8-1"; sha256="06h1iwgshiq4bvly5l1nrddrh2knc82z2aqxh8ls9ipbs7qjsvaf"; depends=[DBI rJava RJSDMX tframe tframePlus TSdbi]; }; TSsql = derive2 { name="TSsql"; version="2017.4-1"; sha256="0f71q6gqfx4r3ghsmr572cvkpmf2xf7kipf10ii99z1y23dxmsdn"; depends=[DBI tframe tframePlus TSdbi zoo]; }; TSstudio = derive2 { name="TSstudio"; version="0.1.1"; sha256="1myvih5kd9pliczddjscqlq811dswqh9d8an8p5bi12h31w9pp30"; depends=[forecast lubridate magrittr plotly reshape2 xts zoo]; }; @@ -3835,12 +3862,12 @@ in with self; { TTR = derive2 { name="TTR"; version="0.23-3"; sha256="07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1"; depends=[curl xts zoo]; }; TTS = derive2 { name="TTS"; version="1.0"; sha256="0dhxj474dqjxqg0fc2dcx8p5hrjn9xfkn0rjn2vz3js92fa9ik9h"; depends=[mgcv sfsmisc]; }; TTmoment = derive2 { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; }; - TUWmodel = derive2 { name="TUWmodel"; version="0.1-8"; sha256="0c00jd2bq4i5fd55hj7l2grkpn990p0kmhbsh95b2zrzhbwgcjp6"; depends=[]; }; + TUWmodel = derive2 { name="TUWmodel"; version="1.0-1"; sha256="1q150r0m93cjj0q1qvn4drhgvhvvgb63d8iii5crhzjpqbdhyka7"; depends=[]; }; TVsMiss = derive2 { name="TVsMiss"; version="0.1.1"; sha256="1lvswq3syp2mfcf0higmyg5k5qhg1q6jaz8g75az3xajn4jylm0k"; depends=[glmnet Rcpp]; }; Table1Heatmap = derive2 { name="Table1Heatmap"; version="1.1"; sha256="1nrabjivfsdhaqmlq365pskkrp99jqsxn8vy03mdnqn5h5zv7wvx"; depends=[colorRamps]; }; - TableMonster = derive2 { name="TableMonster"; version="1.2"; sha256="1cl70d0svzx8nsg6kw5dv50s9d6wxqkyg39d2d4vissbpilq6arn"; depends=[xtable]; }; + TableMonster = derive2 { name="TableMonster"; version="1.7"; sha256="1xa4bkcpzhm50dwbpya346swjjfw46n2x26xm30p8gppilg5c0lb"; depends=[xtable]; }; TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.1"; sha256="135q0bgsm2yndrg3vpwmihbqlyf3qkm97i0jvcw6bf06p6b2fk41"; depends=[]; }; - TailRank = derive2 { name="TailRank"; version="3.2.0"; sha256="15m4wzhngrv8001r2cmq0a4a7j2kk8p061rhnpbqa7mfbfg6jkr5"; depends=[Biobase oompaBase oompaData]; }; + TailRank = derive2 { name="TailRank"; version="3.2.1"; sha256="142m0cq9j8y5g9wh4plxya1jqi0dv6p6praxx3jb84kwqspi91xr"; depends=[Biobase oompaBase oompaData]; }; TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; }; TaoTeProgramming = derive2 { name="TaoTeProgramming"; version="1.0"; sha256="1b36s5mpm5vbhzcwmvm8g5pl7vpn6rsl5cnglfy8kgm1q9nnr7ff"; depends=[]; }; TapeR = derive2 { name="TapeR"; version="0.3.3"; sha256="0q5j7pn05z7hinwl5ypnrgh9ibsw6hvdfszjbnvavzab3bx8l6nn"; depends=[nlme pracma]; }; @@ -3848,15 +3875,15 @@ in with self; { TauP_R = derive2 { name="TauP.R"; version="1.1"; sha256="10sjvcv70fjrsl5nnk9gm4sy7nhwm6aaq57gr37cb10v079ykmk1"; depends=[]; }; TauStar = derive2 { name="TauStar"; version="1.1.3"; sha256="06iq3kjbhyx2i8qlhvamnlch4j32psgw8q0wnvs4js513r6c0cqn"; depends=[Rcpp RcppArmadillo]; }; Taxonstand = derive2 { name="Taxonstand"; version="2.1"; sha256="0dvhiqggbv1by284fg38rcvvrxr9q3zp5gh51p1dh0129h73qj7i"; depends=[pbapply]; }; - TcGSA = derive2 { name="TcGSA"; version="0.10.5"; sha256="14gnlk2r0q9zjc3431v97s7ydcyycvl0xh8bmz08mhzi20snrkpq"; depends=[cluster ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; - Tcomp = derive2 { name="Tcomp"; version="1.0.0"; sha256="0ddswvww9yk31gh8qb9nh0glf9w2mp3ny7zps79kdcnvbkrpcbfs"; depends=[forecast Mcomp]; }; + TcGSA = derive2 { name="TcGSA"; version="0.11.1"; sha256="072i04cp91v2ygarpqg8dlqqf8hia0ryambcv83fcchz9hzs2yx6"; depends=[cluster cowplot ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; + Tcomp = derive2 { name="Tcomp"; version="1.0.1"; sha256="1k0gsf3yr5n9zc2yi6szxm6s7bf61lz4fx8m3v48jlp5w900prwb"; depends=[forecast Mcomp]; }; TeXCheckR = derive2 { name="TeXCheckR"; version="0.5.1"; sha256="18p3hyrrglgn2fdn5q9p1ayb58nznpdr5sy9mniybzsxrmfhghax"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; }; TeachBayes = derive2 { name="TeachBayes"; version="1.0"; sha256="1mfhlkm7wp2i4hvc63xzfyw3q4z1xhlbi933pkqkbrhih94z4rz7"; depends=[dplyr ggplot2 gridExtra LearnBayes shiny]; }; TeachNet = derive2 { name="TeachNet"; version="0.7"; sha256="1p39bsf846r7zwz4lrrv2bpyx9yrkqzrnacajwrz3jjqj6qpp6cn"; depends=[]; }; TeachingDemos = derive2 { name="TeachingDemos"; version="2.10"; sha256="016pivvy8gzz8f3clnr5dg488rb1lf0l5s00c3v34gm1dgiw5x1f"; depends=[]; }; TeachingSampling = derive2 { name="TeachingSampling"; version="3.2.2"; sha256="07c1wx7hl246kvj9ah55kdjpag8a9zbzh3jy0680w5nnv8vzsxxs"; depends=[]; }; TempleMetrics = derive2 { name="TempleMetrics"; version="1.1.0"; sha256="02cs2dgcmxgz1y98x4rpq4l4khqvbnr0248s6rgrgq5l3z2s4qr0"; depends=[BMisc pbapply]; }; - Ternary = derive2 { name="Ternary"; version="1.0.0"; sha256="1dqkvddsb0g4bhiqnq22n4lfkxcrwimygai5lsrn1nlijyhcxfn1"; depends=[]; }; + Ternary = derive2 { name="Ternary"; version="1.0.1"; sha256="0myppwcb4qvz9nkig641zrlf8yhy96qyg1yzh5nnli8a8xg0hjpk"; depends=[]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="1.0"; sha256="07k4sgjda1gwdlx5rap5fhs5rww2ahzyf0fq98dsm99gvjajnmwn"; depends=[Amelia mice]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; @@ -3898,28 +3925,29 @@ in with self; { Trading = derive2 { name="Trading"; version="1.1"; sha256="1mzqck9n14xp16vflx1sx8lry0wjmx37hqv76ldj21xnk5zbrgil"; depends=[]; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; }; Traitspace = derive2 { name="Traitspace"; version="1.1"; sha256="1wlrpnzb39vgkqy0ynbwlgrkkqgklrk6pw7f8p7p2i132qk2c291"; depends=[mclust permute]; }; - TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.5"; sha256="0zdni9zqz3yy5ac2xfn3x2ad2lsmm7aw67nshv2sis828f9bsj9x"; depends=[geosphere ggplot2 magrittr rgdal rgeos RPostgreSQL sp spacetime trajectories xts]; }; + TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.6"; sha256="1n5qcyc1kb8rdrqaji7pp63l2gyr6jim8spm8ydb4lnqfcnrin9g"; depends=[geosphere rgdal RPostgreSQL sp spacetime trajectories xts]; }; TransModel = derive2 { name="TransModel"; version="2.1"; sha256="0brlr4w5k8xsgbrizm7ha0cmq0kqzd2fcjpszq7gym844jj93csi"; depends=[MASS survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; TransferEntropy = derive2 { name="TransferEntropy"; version="1.4"; sha256="0620axdj6qyskf7xszrs8j5d2l73ns4bgbdg03fvr8i7jmq70zb8"; depends=[BH Rcpp]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; - TreeBUGS = derive2 { name="TreeBUGS"; version="1.3.1"; sha256="0zwbp7z31hw6krwhf21wpy5ryfhf0hhipjrsmvbrb7d4sx9am2vb"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; + TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.0"; sha256="0xcipsfwghnf2x2x0i77vr79xs646v354skwxxw6m72ff6arbfz4"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; + TreeDep = derive2 { name="TreeDep"; version="0.1.1"; sha256="0229ip18vbz36ks28p6pja30fb72qcdp7vwi2x0aiymhiigsmirs"; depends=[ggplot2 lubridate]; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; TreeSearch = derive2 { name="TreeSearch"; version="0.1.2"; sha256="0q25zw53whp1v57pkc50h2j7jb64jpip00s0qnmvdgncbrs4zhx5"; depends=[ape memoise phangorn R_cache Rdpack]; }; TreeSim = derive2 { name="TreeSim"; version="2.3"; sha256="1y98m2whpx9kssgklw2d6prs6af9vcn8yva1l7lm1l509py1fn6h"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.3"; sha256="0qwqvmmdn290llz5hmmx2q24jjmd1bxssrslzv31kzi1yq5h6w0b"; depends=[ape TreeSim]; }; - TrendInTrend = derive2 { name="TrendInTrend"; version="1.0.2"; sha256="0ymlgalddnfnb55s31bysm68yh823ys0rr5fgiic4a2ipnbfd8qf"; depends=[pROC rms]; }; + TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.2"; sha256="1kdjrzv2s5vpyg1lx6qkxj3dyi84qwhrvz17mx731f9pp70cz29j"; depends=[pROC rms]; }; TriMatch = derive2 { name="TriMatch"; version="0.9.9"; sha256="17v8hdm594i9qs5hvrzb1k94wrzvx07479rmvbk4314fim27mabg"; depends=[ez ggplot2 gridExtra PSAgraphics psych randomForest reshape2 scales]; }; TriadSim = derive2 { name="TriadSim"; version="0.1.1"; sha256="0m14k512b7q09zx51v2kxa8q9pk2i179w6ckl6jxj2acc860xw3k"; depends=[doParallel foreach snpStats]; }; TrialSize = derive2 { name="TrialSize"; version="1.3"; sha256="1hikhw2l7d3c7cg4p7zzrgdwhy9g4rv06znpw5mc6kwinyakp75q"; depends=[]; }; TrioSGL = derive2 { name="TrioSGL"; version="1.1.0"; sha256="0xzyv1vppw0v1xjpf83nnv1sx1xy7197ay6l7dzvr0vllappdam9"; depends=[]; }; TripleR = derive2 { name="TripleR"; version="1.5.3"; sha256="13s1vlmr4sqa2sq2fbcld86bh3g73yb204aawbks11rjblwzvb0h"; depends=[ggplot2 plyr reshape2]; }; - TropFishR = derive2 { name="TropFishR"; version="1.2.1"; sha256="17c7v85srx2l5chlz4yj8x6qrnlp9vvm11qkag73ma2x2a365sgn"; depends=[doParallel GA GenSA MASS msm propagate reshape2]; }; + TropFishR = derive2 { name="TropFishR"; version="1.6.0"; sha256="0cgrzxga3k3zyqmqf3qixsl0aln0g7zb39h6m9m3gpjx5ih86gbk"; depends=[coda doParallel GA GenSA Hmisc MASS msm propagate R2jags reshape2 rjags]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="1.0"; sha256="1qj18xcq58xah1niwxgqqzscl7dfgxh2s8fdbzk1vigwwm5xfvij"; depends=[randtoolbox]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive2 { name="TukeyC"; version="1.3-0"; sha256="1rkd20m9f97n88zlyidipqs6nd6hldw8s4bxiwvrj1ba2lbg09p3"; depends=[doBy]; }; TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.2"; sha256="03lik9vkah3hjhn0l4ci95v2h4q8mnziq006idipn69l4gmnddxl"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; - TunePareto = derive2 { name="TunePareto"; version="2.4"; sha256="0pljl3q5s9yqc4ph70y66ff9ci9w8gwj8jsy8srxqkgqvahc8arf"; depends=[]; }; + TunePareto = derive2 { name="TunePareto"; version="2.5"; sha256="0v1ylh4m5s80zp346pxxlvhm5070w83mlzfxjyp4n000c8r2nkf4"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; }; TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; }; @@ -3943,18 +3971,18 @@ in with self; { UdderQuarterInfectionData = derive2 { name="UdderQuarterInfectionData"; version="1.0.0"; sha256="084bq5ai1ccp4www64z0ipic74zkd8j1ygv0py900164a25wdr9b"; depends=[]; }; Ultimixt = derive2 { name="Ultimixt"; version="2.1"; sha256="0fh2qpm7qpv1170jzbmzqhvwsn69lblizzisgasswy2nix2jjz4y"; depends=[coda gtools]; }; Umatrix = derive2 { name="Umatrix"; version="3.1"; sha256="131j7yrb0yzffl6gvirdj29zmsbwg8163i15gg9f0clfcrl1kcx6"; depends=[abind AdaptGauss deldir fields geometry ggplot2 pdist plyr png Rcpp reshape2 shiny shinyjs]; }; - Umpire = derive2 { name="Umpire"; version="1.3.4"; sha256="0kxndg96ah6sk1m216f2dmkg73w10lyg3rv7qsrnn145mznsdlw1"; depends=[]; }; + Umpire = derive2 { name="Umpire"; version="1.3.5"; sha256="1l0mpx66vgn282hc1c75bgxh471fbmyh3y0ldxb0h4pj55db93xq"; depends=[]; }; UncerIn2 = derive2 { name="UncerIn2"; version="2.0"; sha256="08cg7armz9xwwn1222aws98cwrvmw0s73pxpnszmrmrli1qs92k1"; depends=[automap fields geoR gstat RandomFields Rcpp sp]; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.4.7"; sha256="0b7mx919lbj12zrj8l01wfrdpqiq7s7p9q25alp7yf4jpv9w4vfa"; depends=[nloptr reshape2 rootSolve]; }; UniDOE = derive2 { name="UniDOE"; version="1.0.2"; sha256="14jz4acrvbv59sbr7gya8g0z749vv0i04gl5wl0y4218byjvw6bs"; depends=[Rcpp]; }; UniIsoRegression = derive2 { name="UniIsoRegression"; version="0.0-0"; sha256="0lmrmb9sbk41ak7sbcrzhfnijb1skgb4lqg9m9imc98lcp69h7z0"; depends=[Rcpp]; }; - Unicode = derive2 { name="Unicode"; version="10.0.0-1"; sha256="1kj4b29gj3p0wzlzxqn7lwzabair6np705va0nxissfybpmwalgk"; depends=[]; }; + Unicode = derive2 { name="Unicode"; version="11.0.0-1"; sha256="1rjyz1d7xw9i1pzx0g653ymkr5hjcmri3dl8v0skzq13qc3fag3d"; depends=[]; }; UnivRNG = derive2 { name="UnivRNG"; version="1.1"; sha256="0vjsqc1y24z7zlclglh55kkxjhy0dc5gjsy427zdv95j58jbxa66"; depends=[]; }; UpSetR = derive2 { name="UpSetR"; version="1.3.3"; sha256="08vj7l92b8fpqyqwxshll2mhk3yhgyr74axvr2lf29z78bapymhz"; depends=[ggplot2 gridExtra plyr scales]; }; - UsingR = derive2 { name="UsingR"; version="2.0-5"; sha256="1w1swcb5srb2b76agbh3mipz8b3vbhpnhxfhg7k546y38j3crafq"; depends=[HistData Hmisc MASS]; }; + UsingR = derive2 { name="UsingR"; version="2.0-6"; sha256="1lr8z45r5s7fxrd42rswm6w7s3k5nds244b9d525jb5v4n8w9kpw"; depends=[HistData Hmisc MASS]; }; V8 = derive2 { name="V8"; version="1.5"; sha256="155389k8laa48akg0bfsz65s4ddmpk0xpi1ha56z1sayv01vrrgc"; depends=[curl jsonlite Rcpp]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; - VARSEDIG = derive2 { name="VARSEDIG"; version="1.6"; sha256="1iddpll0fdspzxxf2g1d6zwfs0xrnbq5zrch2a9flrfz2iam6brk"; depends=[]; }; + VARSEDIG = derive2 { name="VARSEDIG"; version="1.7"; sha256="1vf0gqf81lbksp9m6yj28wsk5s29fqcfvlymy91hni814dkb1mxw"; depends=[]; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; }; VARtests = derive2 { name="VARtests"; version="1.0.1"; sha256="19xmf4mg4v1fwd002ccinfbsbpcq9qfmzc2sf710mqv6i8ghv6jm"; depends=[Rcpp RcppArmadillo sn]; }; VBLPCM = derive2 { name="VBLPCM"; version="2.4.4"; sha256="09b80313w2dljl009xzcfhdcl6flc8nqzw9pzgfbciwi61666ppb"; depends=[ergm mclust network sna]; }; @@ -3964,6 +3992,7 @@ in with self; { VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; VGAM = derive2 { name="VGAM"; version="1.0-5"; sha256="0ik3wyv6jj54bg34z0fzzk4xg0h6x98jqx4q2r7g1f0in0qgbb01"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.0-3"; sha256="1jicadjaqmys1bbgkp64hmm8wwmi6f734il00v8qjz3jl9b02pkn"; depends=[]; }; + VGAMextra = derive2 { name="VGAMextra"; version="0.0-1"; sha256="0rlj4q6ry6v3fnpmg4s33ynn7qzs5m98csap55nyn6r9ynrh5gk5"; depends=[VGAM]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; @@ -3972,7 +4001,7 @@ in with self; { VIMGUI = derive2 { name="VIMGUI"; version="0.10.0"; sha256="14na9ss0vkcys979kdcciynwssqsvy2w566nydgzd3n7gcmx2agm"; depends=[Cairo foreign gWidgets gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; }; VLF = derive2 { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; }; - VNM = derive2 { name="VNM"; version="6.1"; sha256="195fcgs6rzpji250j5kikim4k2rfg1gqgz65f2vgfbmz76wi4za6"; depends=[Rcpp]; }; + VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; }; VRPM = derive2 { name="VRPM"; version="1.2"; sha256="1cai5a71vzkx0d7cwzsxbcz7r9cdkqjk4l4bp2ffj5pp7nrlh15r"; depends=[fields ggplot2 Hmisc kernlab R2HTML ROCR shiny survival viridis]; }; VSE = derive2 { name="VSE"; version="0.99"; sha256="07m5080nw72b77238v2wwdh4dxsvv6y78d4j1329n90wyj2crxl4"; depends=[car GenomicRanges igraph IRanges]; }; VSURF = derive2 { name="VSURF"; version="1.0.4"; sha256="1sby2ls8yhxv4hx0y508pypsj1sbc0d269yl0xnqbxz44bhj8zzm"; depends=[doParallel foreach randomForest rpart]; }; @@ -3980,8 +4009,8 @@ in with self; { VWPre = derive2 { name="VWPre"; version="1.1.0"; sha256="1ccrim9nx5fmmadg687gz9qrfkyxp48rskg1n2pxfwd3h10c9js1"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; }; VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; - VarReg = derive2 { name="VarReg"; version="1.0.1"; sha256="00ygs9gk2719fnhb47z1pj7qacapzg9qs1li2206vsfrmqxjvj1a"; depends=[sn survival]; }; - VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.1"; sha256="0yy07fj0jkrninpwgnkw4h25yvbnb9z8kc02056nyh21kpj59vkl"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; }; + VarReg = derive2 { name="VarReg"; version="1.0.2"; sha256="04235hr0r6sp7r3ccvcfb8l6p8yapcdrn6zl7mmvbyc4qb70gawh"; depends=[sn survival]; }; + VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.2"; sha256="0ilkn40b7845y3nlli160i6fmfaw2p1hvd97q2hnpvscrgmdqvz3"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; }; VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.7"; sha256="1sb31338r2p0jsa3k72q9lc5f57cybywmda7q2j8byngh1fjvgyz"; depends=[curl RISmed stringi stringr XML XML2R]; }; VariableScreening = derive2 { name="VariableScreening"; version="0.1.1"; sha256="03l929qhgr1bd721488xx0il1hlswv3zdad518ki94ghq9c4nmg3"; depends=[expm gee MASS]; }; @@ -3994,10 +4023,8 @@ in with self; { VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.6"; sha256="1ccl4j3vb6aw1qfbqil67dy74daldajwzm7s5hqcidm73fd0wknc"; depends=[Rcpp]; }; - VetResearchLMM = derive2 { name="VetResearchLMM"; version="0.2.0"; sha256="1vx72pn3fl27mjsa48kz5j1sj1bkjq8q0ifs5dxdfrcdswfqhjcw"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; - ViSiElse = derive2 { name="ViSiElse"; version="1.2.0"; sha256="0k5hhzyjws0haawx2r2c0rxjbjdfx821x0jmj88786q6x67x86n0"; depends=[chron colorspace Matrix stringr]; }; - VideoComparison = derive2 { name="VideoComparison"; version="0.15"; sha256="0592fz0v4xvq1qy2hj4ph90v7zn1cnzr6a094mp9p1k61ki3fbg2"; depends=[pracma Rcpp RCurl RJSONIO zoo]; }; - VineCopula = derive2 { name="VineCopula"; version="2.1.4"; sha256="1mzxq3ci4z24z8d5w9x1n0d5h7ck7wbcx9y38vlaryyi5ipbhadh"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; }; + VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; + VineCopula = derive2 { name="VineCopula"; version="2.1.6"; sha256="0gppfjffz5vc35rfjjplwjfp2vpw8hmfc0257k33qki46g5haw5j"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; }; VisuClust = derive2 { name="VisuClust"; version="1.2"; sha256="0hnjmrz352950rzky88q4nwvkx7zp6x3lsm7kff5dl4w05iq4wsl"; depends=[aplpack]; }; VizOR = derive2 { name="VizOR"; version="0.8-5"; sha256="1v76m67xdlg06w3dmp27mh3mv3lfqy6bd1iq907dynp2g4qf4ww0"; depends=[lattice rms]; }; Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; @@ -4006,7 +4033,7 @@ in with self; { W3CMarkupValidator = derive2 { name="W3CMarkupValidator"; version="0.1-6"; sha256="0nfay5nqss3zlw4nikj8h3zzlnjfxjch4pm3qky15qrcigrybrbl"; depends=[curl xml2]; }; WACS = derive2 { name="WACS"; version="1.0"; sha256="1x6vn7xhrnaggrxkvap6si8gz7b6z2zpjpbb9zgag4vyq3s7nxgy"; depends=[mclust mnormt mvtnorm tmvtnorm]; }; WARN = derive2 { name="WARN"; version="1.2-3"; sha256="0vkp70cc3slz9y8qfybrqyjyglsxz9fnqrid735h2a113h4xvr3v"; depends=[MASS]; }; - WCE = derive2 { name="WCE"; version="1.0"; sha256="1kb1z67ymnz8cgwxq6m5fpqgxmmrfiwh2q3x4rhanac2sinagyn4"; depends=[plyr survival]; }; + WCE = derive2 { name="WCE"; version="1.0.1"; sha256="0zp9xcq40vy2pv06rqn4d24bracm2vd3yyq4h56qppx47419fmm4"; depends=[plyr survival]; }; WCQ = derive2 { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; }; WDI = derive2 { name="WDI"; version="2.5"; sha256="0wm3b844pn33047wfd8yp22c6ysdsi8qx71fm1h5rq5vm9mcg9cp"; depends=[RJSONIO]; }; WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; }; @@ -4018,24 +4045,24 @@ in with self; { WMWssp = derive2 { name="WMWssp"; version="0.3.2"; sha256="019fcmf5zmbm20zyvx96nwp66lqm2xw7hbpacfwn8cvw3dq85chr"; depends=[rankFD]; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; - WRS2 = derive2 { name="WRS2"; version="0.9-2"; sha256="0szjq9ffckjqa128avs4cymqvxk7dhldzj620kcq7q59aagrnj04"; depends=[MASS mc2d plyr reshape]; }; - WRSS = derive2 { name="WRSS"; version="1.2"; sha256="0nml5sv0c4fflxvhhf7zwxdz45iid4n7v8kyc4l1qhn0wi2hihdk"; depends=[Hmisc]; }; + WRS2 = derive2 { name="WRS2"; version="0.10-0"; sha256="17iriwkng75iy93mp99ihzmvgpgbrg0sgwxs2yx1d3ss7h0k1x3j"; depends=[MASS mc2d plyr reshape]; }; + WRSS = derive2 { name="WRSS"; version="1.4"; sha256="1fkbrk9s3jn7qfv5jvzcgjf0jwbxi8dr7485msxj3najbhqd2qy5"; depends=[GGally ggplot2 Hmisc network]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.0"; sha256="0yyhls0qzwwj4sz5d1nvzfiacx28dmf2hgjc7xgfi2qjkckg40hs"; depends=[caret dplyr EnvStats fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; - WVPlots = derive2 { name="WVPlots"; version="0.3.1"; sha256="19ddgkblyqfvnx4a9c7i8nfvcfrmnsbbb3s61hqp16j59p5gfk3x"; depends=[ggplot2 gridExtra mgcv sigr wrapr]; }; + WVPlots = derive2 { name="WVPlots"; version="1.0.0"; sha256="16wazxf4c1awxfix4dmp1zcwrfwbkddck71gxgimf471gx60hl8p"; depends=[cdata ggplot2 gridExtra mgcv sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaterML = derive2 { name="WaterML"; version="1.7.1"; sha256="0aqcanq2l3m9w1kglmkbqshs80wx9inmjp0c1i2j901g4k35ss5j"; depends=[httr RJSONIO XML]; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; }; Wats = derive2 { name="Wats"; version="0.10.3"; sha256="1wh4wxzmdj154mh61ng4bg827hpx1kw85x34c1d7xdpbq3wag4g1"; depends=[colorspace ggplot2 lubridate plyr RColorBrewer testit zoo]; }; WaveLetLongMemory = derive2 { name="WaveLetLongMemory"; version="0.1.2"; sha256="1p9ld6w2qgbvkvp7xkzzd14v89rxcwl6vlr1zgxkpc5awl1ln1a8"; depends=[fracdiff wmtsa]; }; - WaveletArima = derive2 { name="WaveletArima"; version="0.1.0"; sha256="1f8g6r9qmhr2y7sf7x2vphv2sab5rywpfjvhsxfmzljjmirf2v3n"; depends=[forecast fracdiff wavelets]; }; + WaveletArima = derive2 { name="WaveletArima"; version="0.1.1"; sha256="19hz2q280m41qh3m9lx3i9p6p5fl6pw8r9b06xk6sn04hxbim8xx"; depends=[forecast fracdiff wavelets]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; WeMix = derive2 { name="WeMix"; version="1.0.2"; sha256="1wj1jxw65i94xf5zk9phgkwybvl2h05ynq0zhdc7q3j6b90mv9hn"; depends=[lme4 MASS minqa NPflow numDeriv Rcpp RcppArmadillo Rmpfr statmod]; }; WebGestaltR = derive2 { name="WebGestaltR"; version="0.1.1"; sha256="0cdpfwp4whx8pff73acxga072lwbibl44hxdjs9jsb5i21h55vbr"; depends=[data_table doParallel foreach pkgmaker PythonInR rjson]; }; WebPower = derive2 { name="WebPower"; version="0.5"; sha256="184wig66bcg7vsppaijq5jpq2hffl3bhshdx4ilz5hw98mimxg13"; depends=[lavaan lme4 MASS PearsonDS]; }; WeibullR = derive2 { name="WeibullR"; version="1.0.9"; sha256="13qkfnfp2pbvb78mj7fg8cgjnbrxv6dbms70wvn9f3mc70djmrb3"; depends=[Rcpp RcppArmadillo]; }; - WeightIt = derive2 { name="WeightIt"; version="0.3.2"; sha256="13rswk3qr01y3ikpa2d9z7l5wicgsmiqmmhx7cbnyi4jny316sa3"; depends=[cobalt]; }; + WeightIt = derive2 { name="WeightIt"; version="0.4.0"; sha256="1y0910wa1lx2jrbnzk9099v64skh7sm8cx85g62ikgcj291z6c8c"; depends=[cobalt]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; WeightedCluster = derive2 { name="WeightedCluster"; version="1.2-1"; sha256="04gsr65mssv4cz4v8sh44qhyzn0isll057d45z4ljv6sx0an5yhl"; depends=[cluster RColorBrewer TraMineR]; }; WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; @@ -4051,7 +4078,7 @@ in with self; { WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; WindCurves = derive2 { name="WindCurves"; version="0.1.3"; sha256="0bvbnrkdk0g0radgcw4zbhq6czpvq3f7f34x83qk09i8ngmwd28c"; depends=[drc imputeTestbench readbitmap]; }; WordPools = derive2 { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; }; - WordR = derive2 { name="WordR"; version="0.2.3"; sha256="0sn14s4vnmj6zs8mc8mj5ph78m9z9yr29lknqma3wrphb7cla50w"; depends=[dplyr officer ReporteRs]; }; + WordR = derive2 { name="WordR"; version="0.3.0"; sha256="0wfgr5jg0vn58cn2dra3s46c5x5msqw3p666lbhhs48m75j12daq"; depends=[dplyr flextable officer]; }; Wrapped = derive2 { name="Wrapped"; version="2.0"; sha256="1z5kypsd39z9arsw57axckvl8b4jnr5wv60s9z58f5s89gn5vxxg"; depends=[AdequacyModel ald cubfits evd fBasics gamlss_dist GeneralizedHyperbolic GEVStableGarch glogis irtProb LCA lqmm metRology NormalLaplace normalp ordinal sgt SkewHyperbolic sld sn VarianceGamma VGAM]; }; WrightMap = derive2 { name="WrightMap"; version="1.2.1"; sha256="16zp7h28fap5hq5xzvkb4lc217yhfmwzfbvw2lsni0gf9qxqkgqd"; depends=[]; }; WriteXLS = derive2 { name="WriteXLS"; version="4.0.0"; sha256="0nwxi36w3rkzw9j0qil64gakhb101rxg1wydjkwlpg0nbsj1sm50"; depends=[]; }; @@ -4077,7 +4104,7 @@ in with self; { YPmodel = derive2 { name="YPmodel"; version="1.3"; sha256="1vll33nm7xynnbq15wksk9c38jhjfd6l1bbzijn5skqc5yik1r5x"; depends=[]; }; YaleToolkit = derive2 { name="YaleToolkit"; version="4.2.2"; sha256="12wggdyz0wgnmxnqhp8bypyy1x1p50g49fwdzl2l43il44cdyv0g"; depends=[foreach iterators]; }; YieldCurve = derive2 { name="YieldCurve"; version="4.1"; sha256="0w47j8v2lvarrclnixwzaq98nv1xh2m48q5xvnmk7j9nsv2l3p68"; depends=[xts]; }; - YuGene = derive2 { name="YuGene"; version="1.1.5"; sha256="1f1bia1q1z2rzp4pw218zglf02x1m9zpz5gqllrd77ggw8ilqfjc"; depends=[mixOmics]; }; + YuGene = derive2 { name="YuGene"; version="1.1.6"; sha256="1kv9n82wrms0c4y5fz9ckzhm1a609mnqp0pwvd0fpyscp8krmlpp"; depends=[mixOmics]; }; ZIBBSeqDiscovery = derive2 { name="ZIBBSeqDiscovery"; version="1.0"; sha256="12g9rga9z6318ni6x6q9hdqlgl93y2xn8vf3gc6sm97fz8pliswx"; depends=[mcc]; }; ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; }; ZIM = derive2 { name="ZIM"; version="1.0.3"; sha256="1497ki0pr0x21fz5wa2z6zgb2br99z56gvfxyn9cglqq45if6cjh"; depends=[MASS]; }; @@ -4098,11 +4125,11 @@ in with self; { aSPU = derive2 { name="aSPU"; version="1.48"; sha256="0kjvwwvyhiz9i5kxqg68lq6cvxnk9vzvp5zca5hfv2g77j42wh9h"; depends=[fields gee MASS matrixStats mvtnorm]; }; aTSA = derive2 { name="aTSA"; version="3.1.2"; sha256="1p3spas0sxj08hkb8p6k2fy64w86prlw1hbnrqnrklr0hnkg2g54"; depends=[]; }; aVirtualTwins = derive2 { name="aVirtualTwins"; version="1.0.1"; sha256="1jg19ns3mxfycc11i2c152d83n4kqz3dd6d269sijnxrw80kzjki"; depends=[party randomForest rpart]; }; - abbyyR = derive2 { name="abbyyR"; version="0.5.1"; sha256="1s8zf18sh0s89vk3dl09fzrq50csmmfvmsanf5vfkv9n5lx6pklg"; depends=[curl httr plyr progress readr XML]; }; + abbyyR = derive2 { name="abbyyR"; version="0.5.4"; sha256="1jh1c1ad6mgw7brdh2isnza1qpjlfxnqr7jl76yd93axyfl76xjx"; depends=[curl httr plyr progress readr XML]; }; abc = derive2 { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; - abcrf = derive2 { name="abcrf"; version="1.7"; sha256="1gz1jhbc2qj2dvsdn22hb03lm99v8hfr5qjrjql14jvhw8y2smz8"; depends=[MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; + abcrf = derive2 { name="abcrf"; version="1.7.1"; sha256="06vy3inikrr9hv36q4djhrgzi9zizdfnhz17wpra8kadmr7qj441"; depends=[MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; abctools = derive2 { name="abctools"; version="1.1.1"; sha256="0x6pjdvn5z510j42byddzdvg2mgv81yy72snia5k8h7bs9k5glfg"; depends=[abc abind Hmisc plyr]; }; abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abe = derive2 { name="abe"; version="3.0.1"; sha256="1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"; depends=[]; }; @@ -4119,7 +4146,7 @@ in with self; { accelmissing = derive2 { name="accelmissing"; version="1.4"; sha256="1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"; depends=[mice pscl]; }; accrual = derive2 { name="accrual"; version="1.3"; sha256="11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z"; depends=[fgui SMPracticals tcltk2]; }; accrued = derive2 { name="accrued"; version="1.4.1"; sha256="05g1jb5914z18rcai1ahn7nihn27vr2rnadwv94gc1j7ivvikvs5"; depends=[]; }; - acebayes = derive2 { name="acebayes"; version="1.4.1"; sha256="0wkygvhwf0y5jzkcj6prjmr9dlak1xgsbswlixqwrx5b48iqxgwh"; depends=[compare lhs randtoolbox Rcpp RcppArmadillo]; }; + acebayes = derive2 { name="acebayes"; version="1.5"; sha256="0533f9c44lq57cyar05z3ikg091h1pyrq84h2zghjyp66drnw6pa"; depends=[compare lhs randtoolbox Rcpp RcppArmadillo]; }; acepack = derive2 { name="acepack"; version="1.4.1"; sha256="1f98rpfjmhd92rdc3j004plyfpjailz6j0ycysbac0kgj83haxc2"; depends=[]; }; acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; }; acm4r = derive2 { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; }; @@ -4137,10 +4164,11 @@ in with self; { actuar = derive2 { name="actuar"; version="2.3-1"; sha256="0i0w5y0bgma42p4cbrbv0bxkambp7hgqqlsg90p5skfvg7r1n3bk"; depends=[expint]; }; ada = derive2 { name="ada"; version="2.0-5"; sha256="1h3a07czp0w3hrhjcg1fz721y8vsfclzqi3rq8qfzgpfb4h1f06r"; depends=[rpart]; }; adabag = derive2 { name="adabag"; version="4.2"; sha256="109wrl1pwvmyv2l909hrvk7dg4aa9pv449mvdycp50zwrsw9w0a7"; depends=[caret doParallel foreach rpart]; }; - adagio = derive2 { name="adagio"; version="0.6.5"; sha256="0jy8g5604alaqbi5ynj95ig07igzbgk8x03a4x1rzkvfwvydfflz"; depends=[]; }; + adagio = derive2 { name="adagio"; version="0.7.1"; sha256="1h9l0ddrxq8y35iy9hdkxdvdwsqpnpkzzbkbwwhm4380lq1m7a3k"; depends=[]; }; adapr = derive2 { name="adapr"; version="2.0.0"; sha256="1s57jdbi5pik56xjz1d4438ax6cywg2yq2s47h5g6wrwvpgr1qfw"; depends=[archivist devtools digest doParallel gdata ggplot2 git2r igraph knitr plotly plyr rmarkdown shiny shinydashboard versions]; }; adaptMCMC = derive2 { name="adaptMCMC"; version="1.3"; sha256="08v11rl0p4w94knb0yzs1ysj42xillya62yaw3zm40d4pqv7vcky"; depends=[coda Matrix]; }; adaptTest = derive2 { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jvaw3c91008l66vf5i4k5anhcs32a3j8yh2iv"; depends=[lattice]; }; + adaptalint = derive2 { name="adaptalint"; version="0.2.3"; sha256="0n047zibp3jsw8d3c971xnqgl8nsqxzcayic0xkz917pwlfrdnd7"; depends=[dplyr lintr purrr]; }; adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-1"; sha256="1hd2l1jv4i5mg0k0g8bbrvv43nk1zxbwh21594zayrzjyikb2593"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; @@ -4161,7 +4189,7 @@ in with self; { adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.12"; sha256="13mhj36nfs36988g53yrmhyd8yq2zzxl8ppzql63964n04fybbpb"; depends=[filehash sp]; }; adephylo = derive2 { name="adephylo"; version="1.1-11"; sha256="06pnrycc7562h17gxbli935289a48na3p4vpb2w96i5cbrjg4jqm"; depends=[ade4 adegenet ape phylobase]; }; adepro = derive2 { name="adepro"; version="2.0.0"; sha256="0q9h7wmkgdnbhg2ygw32jl0bm2vrl32ig2nci9pphgwpsfzb34jq"; depends=[audio Cairo MASS shape shiny shinyBS]; }; - adespatial = derive2 { name="adespatial"; version="0.1-1"; sha256="19i83s19sbvjm5k0gkw8awz359q67rr3768icsjd118fji45dvg0"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep]; }; + adespatial = derive2 { name="adespatial"; version="0.2-0"; sha256="1yqpfkz7i8jkqkbpafm09s1g6mjigpca73b4959zw7gqp9aariz6"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; adfExplorer = derive2 { name="adfExplorer"; version="0.1.4"; sha256="11z6jm20giqmmz4dwcpa9fshvrmlmv8m0y1vg053nch05884niz2"; depends=[]; }; adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; }; adimpro = derive2 { name="adimpro"; version="0.8.2"; sha256="0nfzk9pp4p16c1nvpidngag96r845376h8ljh7m6p6rhk9fs4jdw"; depends=[awsMethods]; }; @@ -4174,42 +4202,45 @@ in with self; { adnuts = derive2 { name="adnuts"; version="1.0.0"; sha256="0jy9wq269r7s70bwld6ngxc6vmaj9vplq4wn97x4f3c6lqy42swc"; depends=[ellipse rstan]; }; ads = derive2 { name="ads"; version="1.5-3"; sha256="1k1japzcf0mafxkv9dlzaqz9n4c749lsx0lja4wj327ninpdcfy4"; depends=[ade4 spatstat]; }; advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; }; - adwave = derive2 { name="adwave"; version="1.2"; sha256="1fnaq9v84y52kb66aq4g0xiqgllk7mi0is5qiafqf546hck3kzz6"; depends=[waveslim]; }; + adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; }; + adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; aemo = derive2 { name="aemo"; version="0.2.0"; sha256="11msifszq7pzmcmwibf2dk2j5dqjc74hrxdxshlprkp6p8sfhijh"; depends=[assertthat dplyr lubridate stringr]; }; afCEC = derive2 { name="afCEC"; version="1.0.2"; sha256="0jdppp93z5nb8m5qbry6cvd472mwiq1yrmm11906c3z2bfz7791f"; depends=[Rcpp RcppArmadillo rgl]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; - afex = derive2 { name="afex"; version="0.20-2"; sha256="150zf3lzsybpj7hm3ry0x4lliscgmmxpq92iab9fbcrvaqyaibn8"; depends=[car coin emmeans lme4 lmerTest pbkrtest reshape2 stringr]; }; + afex = derive2 { name="afex"; version="0.21-2"; sha256="0wf6fvfwk1v2bswp1j8ab2r157vr1i9r1wr1fqhrcaxa2c4fikmz"; depends=[car emmeans lme4 lmerTest pbkrtest reshape2]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="1.0"; sha256="1nb2dlsnvjsvkyrfdaskmpr3kv3qgdfb60xgmzvscfli0yf4dzr1"; depends=[]; }; afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; afpt = derive2 { name="afpt"; version="1.0.0"; sha256="0kshyzvw8sp7p686xi98g758zld3n7kq44lnvly8d0y8fg6ahcl2"; depends=[]; }; - aftgee = derive2 { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[BB geepack MASS survival]; }; + aftgee = derive2 { name="aftgee"; version="1.1-2"; sha256="0g4skg333vdj0cxwkcn7sh1km9rbwjjz40qz211rlzr7x76477rx"; depends=[BB geepack MASS survival]; }; agRee = derive2 { name="agRee"; version="0.5-1"; sha256="1hmqvpcz4vnpcl9f92q5fy1ca89l9sq25fnsw2mxfsa0yqbyxpw6"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.3"; sha256="1ihz92f10p7nq0rw01hka5wg2svf2hgx9f39604ab0j99z0f99hz"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; agricolae = derive2 { name="agricolae"; version="1.2-8"; sha256="1c6n52jralp33hl3nmpv9fc9vsvs6lcz9j75f2zbz0r4sqd2mw89"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; - agridat = derive2 { name="agridat"; version="1.13"; sha256="1029n2jkbvybvkbf4pwdjrw6m05xyzn5xyqyfziqb7xnw51ksm2p"; depends=[]; }; + agridat = derive2 { name="agridat"; version="1.15"; sha256="08wlh75jv856linkspx5w9irjlbjkhqy9wwaciks79s00ii5vbzj"; depends=[]; }; agrmt = derive2 { name="agrmt"; version="1.40.4"; sha256="1y2gnq6b4zkxknygg73r8qrd435y7c69iqn8i56kwk1ccc1rwddx"; depends=[]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; - ahnr = derive2 { name="ahnr"; version="0.2.0"; sha256="0bfy7xxfxfzhv4yl9dlsyl304673p23r2h0lz3lv75iqp2gbzdjr"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; }; + ahnr = derive2 { name="ahnr"; version="0.3.1"; sha256="1g8m3q108ricfyn4fjjaihpr93xz7fm2sfzg3i0fz1n1i703jwm8"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; }; ahp = derive2 { name="ahp"; version="0.2.12"; sha256="0zjhgl0smzx4bkhmdm4rmpyrq4hmxy1nkxvwqjr40pz7vm69icqx"; depends=[data_tree DiagrammeR formattable yaml]; }; - aiRthermo = derive2 { name="aiRthermo"; version="1.1"; sha256="0i3sq7i37i82ad70z2mai09rxzk4kk27hfg5jjbh6pajwzyn5yri"; depends=[]; }; + aiRthermo = derive2 { name="aiRthermo"; version="1.2"; sha256="0j7nldmf63rap18dfa5rcwyy61fcn592fb3h1hp08b00qw39asx3"; depends=[]; }; aidar = derive2 { name="aidar"; version="1.0.5"; sha256="1q2iz2qzh2yl0v0sc537xq4vbx2nblym3kv419vr7jvrghdpx3vj"; depends=[XML]; }; aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; - airGR = derive2 { name="airGR"; version="1.0.9.64"; sha256="08nw07v5d5pljk839i5j5wgrc5lny7v6kl8m2hd6bm9aijql7hg4"; depends=[]; }; + airGR = derive2 { name="airGR"; version="1.0.10.11"; sha256="0m64ww5f4ilrkkpnkv9k1qxsxh519is6y8wciq472jjfwcnsscb1"; depends=[]; }; airGRteaching = derive2 { name="airGRteaching"; version="0.2.2.2"; sha256="13alnmazf8n7sgfzh0hfq6i4cd2pl414vwrakgp36q365fkgzpnc"; depends=[airGR dygraphs htmlwidgets markdown plotrix shiny shinyjs xts]; }; aire_zmvm = derive2 { name="aire.zmvm"; version="0.6.1"; sha256="1a6aq1fkjj053mi36ibykncd1hmcl0f5c0l2fi0cbx6hcysc28ic"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; + airr = derive2 { name="airr"; version="1.1.0"; sha256="0fyyd6sw3fk7gwdxhxxrvsckyxj9qlqqsa20rhqdg3xslkwzzpjh"; depends=[readr stringi yaml]; }; ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akima = derive2 { name="akima"; version="0.6-2"; sha256="1klprj4a2pgy5pwdwnrn3siisi2lh8hr4z6vz38sdvjkcmakxnk1"; depends=[sp]; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; alakazam = derive2 { name="alakazam"; version="0.2.10"; sha256="0bfqc7rbchmj0dby8c8xlxff9gk18kq1v8zqfj3s7h3yddrr7znr"; depends=[dplyr ggplot2 igraph lazyeval progress Rcpp readr scales seqinr stringi]; }; - albopictus = derive2 { name="albopictus"; version="0.2"; sha256="1ils7y0i9dvhpnwyi31y7dvn02pcyn4dk0165ck81s08k96v3r1z"; depends=[]; }; + albopictus = derive2 { name="albopictus"; version="0.3"; sha256="03vk2df17rkcg29il3jj5jlnjs4kkfnj1cfrxdgj3hgm7rbs38si"; depends=[]; }; ald = derive2 { name="ald"; version="1.2"; sha256="1xmvxmyc1nmsrlyr0rvzz20jx6g1f2jvxpg9f39v48ngg5gmanjj"; depends=[]; }; alfred = derive2 { name="alfred"; version="0.1.6"; sha256="07x012lj33m0pmxdwk39ywrlvlfkp7mb203dwv8v88cxplhbaiq3"; depends=[dplyr jsonlite lubridate magrittr tibble tidyr]; }; algorithmia = derive2 { name="algorithmia"; version="0.0.2"; sha256="0kly70l9si8ni8n5xm30vai70pvfvip6354scvjqj34362s0lm0a"; depends=[base64enc httr rjson xml2]; }; algstat = derive2 { name="algstat"; version="0.0.2"; sha256="1ssdrrwnxrhx3syndqxqcaldlbnjamk3x2yiq7jgxy0qsiadmqsi"; depends=[mpoly Rcpp reshape2 stringr]; }; + alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; }; alineR = derive2 { name="alineR"; version="1.1.4"; sha256="1gi4pl7ij60pz85yjiga5kvldraj9n3nhcyqdxrigs0cqvdwg3ar"; depends=[]; }; allan = derive2 { name="allan"; version="1.01"; sha256="02bv9d5ywbq67achfjifb3i7iiaaxa8r9x3qvpri2jl1cxnlf27m"; depends=[biglm]; }; allanvar = derive2 { name="allanvar"; version="1.1"; sha256="142wy1mf4jbp4hy756rz95w24f4j1dgf14f1n5sd09dg4w98j7xg"; depends=[gplots]; }; @@ -4221,20 +4252,20 @@ in with self; { alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; alphahull = derive2 { name="alphahull"; version="2.1"; sha256="129b2j9j60p2wvbb8703x18pydv1g715vmjcb1a80v70i93w4f49"; depends=[ggplot2 R_utils sgeostat spatstat splancs tripack]; }; alphashape3d = derive2 { name="alphashape3d"; version="1.3"; sha256="15l8hsn3jcn5jzwfpya99v2mzrgmhl3i587nw6cx4aky75ajslcx"; depends=[geometry rgl]; }; + alphastable = derive2 { name="alphastable"; version="0.1.0"; sha256="1c24d879jqakf20rwj0xmv41f1g3d1dq04mlcc8zshigi2diyy5c"; depends=[mvtnorm nlme nnls stabledist]; }; alphavantager = derive2 { name="alphavantager"; version="0.1.0"; sha256="02vv0mks73rih4xwabsnk8rkl3cipd27k5lak9lp1rl0agp8g68v"; depends=[devtools dplyr glue httr jsonlite lubridate purrr readr stringr tibble tidyr]; }; - alr3 = derive2 { name="alr3"; version="2.0.7"; sha256="0975m657ri8ad4djrwfdv4cslw8inykq35aj5m00kmsc8gb624j0"; depends=[car]; }; - alr4 = derive2 { name="alr4"; version="1.0.5"; sha256="0m8jgc4mfni17psf8m0avf0m364vcq5k3c9x807p98ch2z5nsygv"; depends=[car effects]; }; - alterryx = derive2 { name="alterryx"; version="0.3.0"; sha256="0y76xy7m7dklvkhfr2czq54ffgj2j5zhnm2kza7m463j1w1mkcqz"; depends=[base64enc digest httr jsonlite]; }; + alr3 = derive2 { name="alr3"; version="2.0.8"; sha256="1vkwgf5c9zb8pphcw47vfwwk12nfj4nggj8dr88jwbdnv7yd257h"; depends=[car]; }; + alr4 = derive2 { name="alr4"; version="1.0.6"; sha256="0v98yzi0fcjxq0ak0w05001h8m9nfa9l0ann9bqvz8bwcmb3jlr2"; depends=[car effects]; }; + alterryx = derive2 { name="alterryx"; version="0.3.1"; sha256="0vpgvh0rgrw4kckdvp4kqmmgcdgcgcdlqlzq3381jq495wcp207b"; depends=[base64enc digest httr jsonlite]; }; altmeta = derive2 { name="altmeta"; version="2.2"; sha256="1k3p06v8ccj0dbjfpl4nw6579bwcy4j925rk15v55khqmrlx780l"; depends=[]; }; - amap = derive2 { name="amap"; version="0.8-14"; sha256="1dz37z9v4zvyvqrs4xvpfv468jwvpxav60qn2w0049bw8llj6xdl"; depends=[]; }; + amap = derive2 { name="amap"; version="0.8-16"; sha256="1qnl2x98x64iaipkx5126rsddq2sx5ml43h75xyiyn30yvbmlxyk"; depends=[]; }; ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; }; - ameco = derive2 { name="ameco"; version="0.2.8"; sha256="1i2ap11z1awalw71hai719xh57banpfgj1nllca66zf781x80di9"; depends=[]; }; - amei = derive2 { name="amei"; version="1.0-7"; sha256="0dyx6a1y5i0abwka0y89d0mpj55rm5ywb4r9c2mqmy43djp181hn"; depends=[]; }; + ameco = derive2 { name="ameco"; version="0.2.9"; sha256="0vzwsy7gp17ghl1hgcsbfs9rarzl8dl36x6lplnzrisqv3dqmk25"; depends=[]; }; amelie = derive2 { name="amelie"; version="0.2.0"; sha256="01v93dswr9nk0kvq50jri4568w17pwkcn64xbpzn2p4c7w6gqkhh"; depends=[]; }; amen = derive2 { name="amen"; version="1.3"; sha256="1qaznfmnh3dlnp41afd37lr328qzy50hn8hi0c302wj0f992ycqg"; depends=[]; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; - amt = derive2 { name="amt"; version="0.0.3.0"; sha256="1a9hvvqh7359bs2x031qgkq364d07kf60jgn13kz5nva36c5wl8v"; depends=[broom circular dplyr fitdistrplus FNN geosphere lazyeval leaflet lubridate maptools purrr raster Rcpp rgeos rlang sp survival tibble tidyr tidyverse]; }; + amt = derive2 { name="amt"; version="0.0.4.0"; sha256="1qdkvkxkxk7l2bjr11h0k9vhh5vapvm12f20lmj7rhamipc43ybv"; depends=[broom circular dplyr fitdistrplus FNN geosphere KernSmooth lazyeval leaflet lubridate magrittr maptools purrr raster Rcpp rgeos rlang sp survival tibble tidyr]; }; anMC = derive2 { name="anMC"; version="0.2.0"; sha256="1j6dah49sgfsb7bj4xys5rcaqw12rrkqhqryqz2xhdkazjmz3gpq"; depends=[mvtnorm Rcpp RcppArmadillo]; }; anacor = derive2 { name="anacor"; version="1.1-3"; sha256="0mj8g9p4fla0ax9jvcq7kii4lrhj8g872p11nys06anva22qjp51"; depends=[car colorspace fda]; }; analogsea = derive2 { name="analogsea"; version="0.6.0"; sha256="1fcvf3yci3szm155pnk89q36dgc55wdlffvll642zn26zc5d1y5n"; depends=[aws_s3 httr jsonlite magrittr yaml]; }; @@ -4242,29 +4273,31 @@ in with self; { analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; analytics = derive2 { name="analytics"; version="2.0"; sha256="1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6"; depends=[car cluster fractal lmtest MASS np powerplus robust trend TSA urca]; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; - anapuce = derive2 { name="anapuce"; version="2.2"; sha256="0qs27as628090k3sq5b14l90g7qdp23d0jz5lb1wxsgi3ji0f7qj"; depends=[]; }; anchoredDistr = derive2 { name="anchoredDistr"; version="1.0.3"; sha256="07q4np0zryb49cpi7w5iz0qna63cyp9nz13d8ws6x9ccg417r99a"; depends=[DBI dplyr ggplot2 np plyr reshape2 Rmisc RSQLite]; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; }; + anesrake = derive2 { name="anesrake"; version="0.80"; sha256="1p2g51w80jiadlf4asbnsw46asarzlzr5c1yfhdb31ymqxd7p76q"; depends=[Hmisc weights]; }; anfis = derive2 { name="anfis"; version="0.99.1"; sha256="1v8di5dzwb1g1ldi7idcmmr9nirp9kxvc8km1qq1i8zaw1bh8pqb"; depends=[]; }; angstroms = derive2 { name="angstroms"; version="0.0.1"; sha256="1k8q4pkb5vcjfp2n2dga3q2ydmdxv020k5qzrb6w01ixrgf15d8l"; depends=[nabor ncdf4 proj4 raster sp spbabel]; }; aniDom = derive2 { name="aniDom"; version="0.1.3"; sha256="1xjbj9d6kv5nprsh1z58gbi338f7sj7dimgvy92j6n1xbrlh83p5"; depends=[rptR]; }; anim_plots = derive2 { name="anim.plots"; version="0.2"; sha256="1plpi90qzk4ng0sm77fvqyv1063w67axvdc29q5nvz4h6v4j7ks3"; depends=[animation]; }; animalTrack = derive2 { name="animalTrack"; version="1.0.0"; sha256="0jlvfflpaq64s48sblzh1n1vx8g3870iss97whigri29s6hn79ry"; depends=[rgl]; }; animation = derive2 { name="animation"; version="2.5"; sha256="0pxmihfr3q1hh4cdnzf7wbzqak5spa3kv4p1wl89giqqngqzwcmj"; depends=[]; }; - anipaths = derive2 { name="anipaths"; version="0.9.3"; sha256="0pip9vhp3d4c6i6l9cmdds3nwaf8cspqviff6q7xng0ib8mi995n"; depends=[animation knitr mgcv RColorBrewer rgdal scales sp]; }; + anipaths = derive2 { name="anipaths"; version="0.9.6"; sha256="0wqpnn85gqsy0m40allx0mngnq5lqz5qhl9g8v0kh0073xq4mvvc"; depends=[animation knitr mgcv RColorBrewer rgdal scales sp]; }; annovarR = derive2 { name="annovarR"; version="1.0.0"; sha256="0l2csp06m5f3i1b4h0pvl8mmzx25c0b411c5sdc3qszirbplh038"; depends=[AnnotationDbi BioInstaller configr data_table DBI futile_logger glue ngstk RMySQL RSQLite stringi stringr vcfR]; }; anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; }; anoint = derive2 { name="anoint"; version="1.4"; sha256="10gdqgag9pddvxh80h458gagvv1474g4pcpa71cg3h7g62rqvmv5"; depends=[glmnet MASS survival]; }; anomalize = derive2 { name="anomalize"; version="0.1.1"; sha256="1szxjc8bh616z2xc50hcggh4ky1b7343i3xmg81rbssvkl2gghlh"; depends=[dplyr ggplot2 glue purrr rlang sweep tibble tibbletime tidyr timetk]; }; + anomaly = derive2 { name="anomaly"; version="1.0.0"; sha256="1l86y3hzqi06s1v3l5vkvk679cy630i2pj0yzxyznm5fjq43l47r"; depends=[dplyr Rdpack rlang]; }; anomalyDetection = derive2 { name="anomalyDetection"; version="0.2.5"; sha256="132wb0xz04zib3x7802b2q546rkf097rsxyi9mi86g6vv7yyw9z1"; depends=[caret dplyr ggplot2 gmp magrittr MASS plyr purrr Rcpp RcppArmadillo tibble tidyr]; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; }; anonymizer = derive2 { name="anonymizer"; version="0.2.0"; sha256="0zlzxcqy8fjhh6ab58a1pi0k686dzgap58d160ms6bsr5mgn3fbf"; depends=[]; }; - antaresProcessing = derive2 { name="antaresProcessing"; version="0.15.1"; sha256="0x2rcj4cfw0rsyzdc98j8yk8mp8cnbpx4qj587wszxlyf90yzgfa"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.1.0"; sha256="1khvwh55gfd62avaj9vl709nrcykyc4zn11fxikbqqgwm9mq7835"; depends=[data_table lubridate plyr shiny stringr]; }; - antitrust = derive2 { name="antitrust"; version="0.99.7"; sha256="0si9vnbk6rcpp913cyfh5h4a5fx9kzafr5x5chb3gakzrbzz0hav"; depends=[BB evd MASS numDeriv]; }; + antaresProcessing = derive2 { name="antaresProcessing"; version="0.15.3"; sha256="0asr43lf8vajf72sgpixy5w7r7v7b83a0877q6dadcxxr4mifr8f"; depends=[antaresRead data_table]; }; + antaresRead = derive2 { name="antaresRead"; version="2.1.2"; sha256="1vw2q2affpi4icqbsh89qkhdf6xxfjnwn6939ibgw5vv8df1b11s"; depends=[data_table lubridate plyr shiny stringr]; }; + antaresViz = derive2 { name="antaresViz"; version="0.14.0"; sha256="0xli4bvk5nds357wq3r1dp155xrcxcjscndbysfdv52827i80nxs"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; + antitrust = derive2 { name="antitrust"; version="0.99.10"; sha256="1xgkbsnsn39s37my7sj917kvq67gxwai7k7lym2i18m60cnz0ilb"; depends=[BB evd MASS numDeriv]; }; antiword = derive2 { name="antiword"; version="1.1"; sha256="0nbx2l0d2y4qvcw4dw3m26zfkgdmav4cq0l00gib7l3y9pqxzjh5"; depends=[sys]; }; - anytime = derive2 { name="anytime"; version="0.3.0"; sha256="1byhgplskj17d0gib9sajfnzyv8p9slgq1vy8fq9j2ibirl86a91"; depends=[BH RApiDatetime Rcpp]; }; + anytime = derive2 { name="anytime"; version="0.3.1"; sha256="1ibpmdq8i9ch06484ql0sdwfrs6smz40qnnw523pb0ryly6q9h16"; depends=[BH RApiDatetime Rcpp]; }; aod = derive2 { name="aod"; version="1.3"; sha256="1a6xs5d5289w69xd2salsxwikjjhjzvsnplqrq78b1sr6kzfyxz3"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1"; sha256="074c16wmgd1vc2yvwx1y84bg55hvmm5yi8zgpwh51jcsbqlhbpgn"; depends=[boot lme4]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; @@ -4272,19 +4305,18 @@ in with self; { aoristic = derive2 { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.5-0"; sha256="0mnydk157557pnkjvcadlghn5d8w9kxas4kwz4y4w21xg7z1jrig"; depends=[ape coda cubature pbapply quantreg]; }; apa = derive2 { name="apa"; version="0.2.0"; sha256="1f9c8m5z8j7mbmbh61vcs680ya1zq5spwqs90zhajaw5fhvlg8km"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; - apaStyle = derive2 { name="apaStyle"; version="0.5"; sha256="1x3kgyxhgbx3r7wi759j75wh811jcm6z559mrk4zm4p99vqz10bl"; depends=[ReporteRs]; }; - apaTables = derive2 { name="apaTables"; version="2.0.2"; sha256="0b3vaknj0a9znrgr98v35ka0lf5y1wcy1x0yv249gysikncn9mjc"; depends=[boot broom car dplyr tibble]; }; + apaTables = derive2 { name="apaTables"; version="2.0.4"; sha256="1msb8aygzbcggdcifmcjpgcpnscvr6fq2ib5afff1vzbas9hjrs3"; depends=[boot broom car dplyr tibble]; }; apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; }; - apcluster = derive2 { name="apcluster"; version="1.4.5"; sha256="0ipg5m3d7fnbvvlavbv8q8ixyrcgdspzwkv00q93f4biybza27x6"; depends=[Matrix Rcpp]; }; + apcluster = derive2 { name="apcluster"; version="1.4.7"; sha256="188hdfmwjjx3aic599nwmkzjqm9j9jighi5bly6qd43c1vj6ih2s"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; ape = derive2 { name="ape"; version="5.1"; sha256="0vm2065993wf4hdqarxqykhfz9aaj0rrb98alhkq4qw1d2kdrmdp"; depends=[lattice nlme Rcpp]; }; apercu = derive2 { name="apercu"; version="0.2.3"; sha256="0w9hi8pdjb3nschh4cy387q67jxhkl2bn9vir949rsl831x4cs1j"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.3"; sha256="157i67yvb9xqlhzcgkxj7n5lq65svxs82z38dv2c0k8p4krjl1pd"; depends=[adegenet ape phangorn]; }; aphid = derive2 { name="aphid"; version="1.1.0"; sha256="0mf2v7b915hpasic2yqxi0g5fcrwac4d1ycikwzcd9hb9qngcb0n"; depends=[kmer openssl Rcpp]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; - aplpack = derive2 { name="aplpack"; version="1.3.0"; sha256="0i6jy6aygkqk5gagngdw9h9l579lf0qkiy5v8scq5c015w000aaq"; depends=[]; }; - apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[aroma_light Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; + aplpack = derive2 { name="aplpack"; version="1.3.2"; sha256="14vwzzshsgkw6gxwnnf6h9fixnwp3g8pd3rv6qjr0y8gis1lmjbg"; depends=[]; }; + apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; apng = derive2 { name="apng"; version="1.0"; sha256="13hvr1w566anrhdicaqwqjgfq2lk3zkn5gcfgy8zazjnad4vy07y"; depends=[bitops]; }; appell = derive2 { name="appell"; version="0.0-4"; sha256="0g7pzhxqgscnyf07xycbrpyimp1z1hljgcr3nqigpx09w7zi5wlw"; depends=[]; }; apple = derive2 { name="apple"; version="0.3"; sha256="194z2f6hwdjjxdkjwlmfhpfp26p9yp3gparklhdbb6zlb4a9nnhz"; depends=[MASS]; }; @@ -4293,7 +4325,7 @@ in with self; { approxmatch = derive2 { name="approxmatch"; version="1.0"; sha256="1z1lrbfvm380p2az88hrxr3f2cgbv2h70wzm99vi9a2dmh0pl7qy"; depends=[]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; }; - aprof = derive2 { name="aprof"; version="0.3.9"; sha256="1w95z3n08nq2fsj8dljgfkz76s1jc3sz2aia3bnfq62yd003qsnl"; depends=[]; }; + aprof = derive2 { name="aprof"; version="0.4.1"; sha256="14qclp88j4ygd4vrxxpgy2s9939wcajjsqycdzpvn64ws29sdpvh"; depends=[testthat]; }; apsimr = derive2 { name="apsimr"; version="1.2"; sha256="14vhsm6am2c2q2sgabnhxr0lgldifss0anjpisrhjqk04njllviy"; depends=[ggplot2 lubridate MASS mgcv reshape2 XML]; }; apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; }; apt = derive2 { name="apt"; version="2.5"; sha256="1y18bqnnxy5p0xx9gbfrnrzq3nlhw3psl5zlibrw6lfhb8lxd4mk"; depends=[car copula erer gWidgets urca]; }; @@ -4306,22 +4338,23 @@ in with self; { archdata = derive2 { name="archdata"; version="1.2"; sha256="0igh6qy3yv5hzprj9izpkqp3f6jkb7pydqzmnl8sqhqjqvb3lnij"; depends=[]; }; archetypes = derive2 { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="3.2"; sha256="08jam0nbqvrgrxjqj24k7f0dybyi935w977yi1qk34q1p48462ph"; depends=[rgl sp XML]; }; - archivist = derive2 { name="archivist"; version="2.3"; sha256="0rwdk2scmd06j428zadcxmvshvssf421265632595hvcacqz6yy4"; depends=[DBI digest httr lubridate magrittr RCurl RSQLite]; }; + archivist = derive2 { name="archivist"; version="2.3.1"; sha256="04f1f9fczibda2a4wivmgwzh5p9xblm9hk8wkgd6xqrvxgv5z8mn"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.2"; sha256="04xb2i47y12ic87gb2l30bldil0505h7s9601hq0afjg3npx6jq7"; depends=[archivist digest git2r httr jsonlite]; }; areaplot = derive2 { name="areaplot"; version="1.2-0"; sha256="0xzfgbnzqsvnq46nsxwyqrwldbaqns3h5np0f5wxpjda9cy2rna1"; depends=[]; }; arf3DS4 = derive2 { name="arf3DS4"; version="2.5-10"; sha256="12cbrk57c9m7fj1x7nfmcj1vp28wj0wymsjdz8ylxhm3jblbgmxc"; depends=[corpcor]; }; - arfima = derive2 { name="arfima"; version="1.6-6"; sha256="0nb0r937jcl2khyj7xy41a383dbzdigjls87yjcwwgmzbpcznwal"; depends=[ltsa]; }; + arfima = derive2 { name="arfima"; version="1.6-7"; sha256="0wajd15lbzbc62v8kclnp0fbppnm7vy2zxrsd5njx5sswvkfx5v3"; depends=[ltsa]; }; argon2 = derive2 { name="argon2"; version="0.2-0"; sha256="0kqn06rpb39jlzizjlnc5c44mfic8llrshxn7ljgmyj35lbqwxqh"; depends=[]; }; argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; argparse = derive2 { name="argparse"; version="1.1.1"; sha256="0fzrbj87b274vf96azdnsjxk2nf45d5wy58vzmlah4b4h7q4j524"; depends=[findpython getopt jsonlite proto]; }; argparser = derive2 { name="argparser"; version="0.4"; sha256="0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"; depends=[]; }; ari = derive2 { name="ari"; version="0.1.0"; sha256="05pva8jp7dhl46dm1fha6f8mavrs76a6c491fq3mavly8qcbgx44"; depends=[aws_polly progress purrr rmarkdown rvest tuneR webshot xml2]; }; + aricode = derive2 { name="aricode"; version="0.1.1"; sha256="0c9k6bp0zdm4l28ga19x8v30x3zw0fbcf7wicnn15xc516glfb2j"; depends=[Matrix Rcpp]; }; arm = derive2 { name="arm"; version="1.10-1"; sha256="0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg"; depends=[abind coda lme4 MASS Matrix nlme]; }; arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.1.1"; sha256="1x2lwdabvh7cjdy57jrnbdb7s9vxs18zyvfzwavi2pgldqz6v2aw"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; aroma_apd = derive2 { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; aroma_cn = derive2 { name="aroma.cn"; version="1.6.1"; sha256="1d9g81b12a3m03wrvb3cvg33fjybgiabpxhci2y2rr6diay42pmr"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; - aroma_core = derive2 { name="aroma.core"; version="3.1.1"; sha256="0mbhk818m8if6cr7g42yy7ba13jh2xs66xkx4zh7dqlwrrmgjnk1"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; + aroma_core = derive2 { name="aroma.core"; version="3.1.3"; sha256="0zikic3hqfn00kgb0078paikz4bdcqq0qygvl4xbvq48868wcz1q"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; arrApply = derive2 { name="arrApply"; version="2.0.1"; sha256="007fsqgb9bsr4mscljhp37dvrk7cv6nrb7y28w8kc7mxvgdq29wg"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.0.2"; sha256="0vqxx0pzvvqnbklpxrcq7d5ppicwbwk3gb2846in0gqjhn4ya4g1"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.0-20160527"; sha256="1ib91hpg6xgy0jr4sb8ib19x0v4f5n96lak0qm0z5vksawgcnp1l"; depends=[svUnit]; }; @@ -4329,16 +4362,15 @@ in with self; { arsenal = derive2 { name="arsenal"; version="1.2.0"; sha256="1glh8vyms5hcplzzn5n6fynr8jyryy65xb2y9lf6nv7kziwqr5fk"; depends=[testthat]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; arules = derive2 { name="arules"; version="1.6-1"; sha256="0glfqgxr87900kigmkby2ff7qrjvd6aq595q85y056i5ckjcp615"; depends=[Matrix]; }; - arulesCBA = derive2 { name="arulesCBA"; version="1.1.3"; sha256="0dpa9v8xksq21lyv6g7m81ccpd08lq816vfy5ga8g3blkg1qfrf2"; depends=[arules caret discretization Matrix testthat]; }; + arulesCBA = derive2 { name="arulesCBA"; version="1.1.3-1"; sha256="0k41m966m2x8xjzvpy6xn4whn9l2dpvidyh39kmhyvya87ibhyg8"; depends=[arules discretization Matrix testthat]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; }; arulesSequences = derive2 { name="arulesSequences"; version="0.2-19"; sha256="1cncvrf7za38b3vdwbzy4yrbakj7jbpxrl1jg6bvjnlkymiajavx"; depends=[arules]; }; - arulesViz = derive2 { name="arulesViz"; version="1.3-0"; sha256="0k9lq1w0cdk9mlbr5mwh87qrzank1nd8bwlymv4xyi7xm5y6wq4l"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd visNetwork]; }; - as_color = derive2 { name="as.color"; version="0.1"; sha256="1y5qpm0pabfk5qvgx6s2vqqxfhp1x99g7dva24zay34nvf4bxrzn"; depends=[]; }; + arulesViz = derive2 { name="arulesViz"; version="1.3-1"; sha256="0lz6dl7ywzbyviib97s48namr6cjjn98anblfpigzaq16zkf2pxl"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd visNetwork]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; asbio = derive2 { name="asbio"; version="1.5"; sha256="0p54a9x54jg81hd86br6b3dg3sr9kzl9rmnrh7x3m6bkinzc780c"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascii = derive2 { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; }; - asciiSetupReader = derive2 { name="asciiSetupReader"; version="1.2"; sha256="11smjl1cvbsgiql3b90x05aa8bspikijc5vzzw4d0hzpyj1j0zmy"; depends=[data_table haven readr stringi stringr]; }; + asciiSetupReader = derive2 { name="asciiSetupReader"; version="1.4.0"; sha256="0pq23ncwlndhzw4qfvzcv9nh74fq6hh9k6w96xhxx69ajy9zd2ys"; depends=[data_table haven readr stringr zoo]; }; asciiruler = derive2 { name="asciiruler"; version="0.2"; sha256="0xhkbsy9dypk09avazgxczyfkh3rhdxhwci688dw1lxnhxv1hj24"; depends=[stringr]; }; asd = derive2 { name="asd"; version="2.2"; sha256="0p3r4qjam3sl3rpcilb0pgx4xx3ly71xqnvkv31vzjs885lgxz4l"; depends=[mvtnorm]; }; asdreader = derive2 { name="asdreader"; version="0.1-3"; sha256="15a922aw0v5w4hrha03xifx8cpifcc773gambgwqq6i5nz08ya26"; depends=[]; }; @@ -4348,7 +4380,7 @@ in with self; { aslib = derive2 { name="aslib"; version="0.1"; sha256="0dkb6bb6dqavjklbciqxqhi3fdqib9asdnhiap2gp9b9wfnkyq7k"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; asnipe = derive2 { name="asnipe"; version="1.1.9"; sha256="0r6hajdvasvik2ij58xm5kvlcz2gqzgqbvw0ypghrp0qkfqxkrla"; depends=[MASS Matrix]; }; aspace = derive2 { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; }; - aspect = derive2 { name="aspect"; version="1.0-4"; sha256="1kxddm8v1y0v2r7lg24r1wpzk7lqzxlrpzq5xb9kn343g53lny6i"; depends=[]; }; + aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; asremlPlus = derive2 { name="asremlPlus"; version="2.0-12"; sha256="119r7wwrz11j85idq21xdp2wq7l2jly73q3179d3bsywbmx5sr17"; depends=[dae ggplot2]; }; assertable = derive2 { name="assertable"; version="0.2.4"; sha256="1d1mc5k9jwn2h5bny3bpkwy10kfz5qlp03z12z9401v47q12d61i"; depends=[data_table]; }; @@ -4378,44 +4410,46 @@ in with self; { aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; astro = derive2 { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; }; astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; - astrochron = derive2 { name="astrochron"; version="0.7"; sha256="12p4n530f4w4idadqidm6w38xdm119bipc63z34q3a2z5gmdd71b"; depends=[fields IDPmisc multitaper]; }; + astrochron = derive2 { name="astrochron"; version="0.8"; sha256="0cliwmzm4p4f1csrx95wh3gl9nkmx3agbgrmpmf34rw6bpwmsf85"; depends=[doParallel fields foreach IDPmisc iterators multitaper]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; astsa = derive2 { name="astsa"; version="1.8"; sha256="023nk6chyy79scjzhv42px5cpym7rnm1c55ylcslyjdmlr5i6afk"; depends=[]; }; asus = derive2 { name="asus"; version="1.0.0"; sha256="16hp8xajb631a5amm1cvhzq8z4cwh1vjiavv3n11fzpxyskhmfrb"; depends=[rwt wavethresh]; }; asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; }; asymmetry = derive2 { name="asymmetry"; version="1.2.5"; sha256="0wsmarmij4crhv5wr4mqibsf787cy7fmmp4xrclsb3gm3g1xwvzz"; depends=[gplots rJava smacof]; }; - asympTest = derive2 { name="asympTest"; version="0.1.3"; sha256="11nlkgws3y8xbz3yli55414a2rkk7367q9q5r2ssa61jaiimibhh"; depends=[]; }; + asympTest = derive2 { name="asympTest"; version="0.1.4"; sha256="02l07psiy1888zx86j2r1l5lznz47wdmzbh39pd2nbj8r9i80szr"; depends=[]; }; asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; }; atlantistools = derive2 { name="atlantistools"; version="0.4.3"; sha256="06rb0c4ralx55mdlqwpjzim0inxif4cdi9732v4h1ll8jhlm5v7d"; depends=[circlize dplyr ggplot2 gridExtra lazyeval magrittr proj4 purrr RColorBrewer RNetCDF rvest scales stringr tibble tidyr xml2]; }; + atlas = derive2 { name="atlas"; version="0.6.0"; sha256="0phpninwqqibafq88s3kwlv84506l2jxaz0hvcwd5hknvydcf6ib"; depends=[httr testthat]; }; atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; - attempt = derive2 { name="attempt"; version="0.2.0"; sha256="1i3y39qzk1bpg1m8f3v8bhigdcklv00ypy93npbh8lyhq4w8lk3v"; depends=[rlang]; }; + attempt = derive2 { name="attempt"; version="0.2.1"; sha256="0366sq1mf3d0amf6yfa42gw1gwwr9rbbqnqvr8hai1bfl672zkcp"; depends=[rlang]; }; attrCUSUM = derive2 { name="attrCUSUM"; version="0.1.0"; sha256="113y40v9hyvnvvzvyqg81n0n1h84pj4zph5q8p0vc0384hw00544"; depends=[Rcpp RcppArmadillo]; }; attribrisk = derive2 { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; }; atus = derive2 { name="atus"; version="0.1"; sha256="15arijdfyci43k0a32zc8qmm73fmzrr3ghhxw0kgipdr3w5xcmz3"; depends=[]; }; auRoc = derive2 { name="auRoc"; version="0.1-0"; sha256="1ijk127p6g5mzc7b4b9lnjnfzvklz3g8w6bckrdahlw7djd9mgz1"; depends=[coda MBESS ProbYX rjags]; }; aucm = derive2 { name="aucm"; version="2018.1-24"; sha256="0x10dawlwxqywjl7mxc2gpp2r4wnd7pb6n80xlrb9yywm7zbb6x2"; depends=[kyotil]; }; auctestr = derive2 { name="auctestr"; version="1.0.0"; sha256="15b1x0c9yhl91gir7jmivp8vxzc8q7wvb0mgam9454avc6l29x4y"; depends=[dplyr tidyr]; }; - audio = derive2 { name="audio"; version="0.1-5"; sha256="1hv4052n2r6jkzkilhkfsk4dj1xhbgk4bhba2ca9nf8ag92jkqml"; depends=[]; }; + audio = derive2 { name="audio"; version="0.1-5.1"; sha256="1imh2l43n1cvwzzby598qn59rsm5262snril6b98hyih7mw7fyad"; depends=[]; }; audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; - augSIMEX = derive2 { name="augSIMEX"; version="1.0"; sha256="1d13kh9xfkpwy2285awhvgfkwyqlsdk2bypm0i1jjf10avrynxvf"; depends=[MASS Rcpp rootSolve]; }; + auditor = derive2 { name="auditor"; version="0.2.1"; sha256="0kpadjzfnahrbryn2zh0zxb93wivlbnznrgad3025mf1qabm3xnr"; depends=[car factoextra fdrtool GGally ggplot2 ggrepel hnp plotROC ROCR tseries]; }; + augSIMEX = derive2 { name="augSIMEX"; version="2.0"; sha256="0j0izfk1hdzzn1s7gd64q56x8ws8nvpzh7a8d13gzwxi9dhvkzvf"; depends=[MASS Rcpp rootSolve]; }; auk = derive2 { name="auk"; version="0.2.1"; sha256="18vqvjksnllbkwfskiv8cv0dbw92nzkxwb0rj14sxxw8y55hybyy"; depends=[assertthat countrycode dplyr rlang stringi stringr tidyr]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; }; autoFRK = derive2 { name="autoFRK"; version="1.0.0"; sha256="10vmgcpj2n5w9g4bjq2g3bz3n3x9b6h35w4qfr13v2sdzp3gz5da"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS Rcpp RcppEigen RcppParallel RSpectra spam]; }; - autoSEM = derive2 { name="autoSEM"; version="0.1.0"; sha256="0s58dnpr7zyclk5vwaf7a2id6paqsnb224f0gpmj2nms4klsw323"; depends=[GA lavaan snowfall]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; autoimage = derive2 { name="autoimage"; version="2.0"; sha256="102f7wkrglsvdrsmyy79v0w7za5b79sn59czxzhriwrp4mrpdl47"; depends=[fields ggplot2 mapproj maps MBA viridisLite]; }; automagic = derive2 { name="automagic"; version="0.3"; sha256="0yzv0ianfq217jvz7rba86bcmxh09p513khvq6jk5k7isblvn0qd"; depends=[devtools dplyr formatR githubinstall knitr magrittr pacman purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; automultinomial = derive2 { name="automultinomial"; version="1.0.0"; sha256="15cxnqaai2dln6jvk7lpfqvlpv5237zn18axp459p5zxcgg0lw88"; depends=[Hmisc igraph MASS Matrix]; }; - autoplotly = derive2 { name="autoplotly"; version="0.1.1"; sha256="1pm1760dd9p0h66q7y1v9icfhz1lk6i5akjda06jc2f0rq7mzlj0"; depends=[ggfortify ggplot2 plotly]; }; + autoplotly = derive2 { name="autoplotly"; version="0.1.2"; sha256="0ajzzj9w9f0v9n37liml63hq5xwkqq53lw85p0a2h99n4lg2hdg8"; depends=[ggfortify ggplot2 plotly]; }; autopls = derive2 { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; }; + autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; autothresholdr = derive2 { name="autothresholdr"; version="1.2.0"; sha256="09wpyirsqw0s4b5221ksr0v0srrq24c6ca8kr5m4hr4ps728np0p"; depends=[checkmate filesstrings ijtiff magrittr Rcpp]; }; - autovarCore = derive2 { name="autovarCore"; version="1.0-2"; sha256="0yvz3nn792xdam8hgnkdrhcyaf9idp0shb1s0yfj1xigknlinn9n"; depends=[Amelia jsonlite Rcpp urca vars]; }; + autovarCore = derive2 { name="autovarCore"; version="1.0-4"; sha256="0i5fvx0z2kri0c855q40hd596kfjhmwpp2zw7d7k0xvk2xbcgbiv"; depends=[Amelia jsonlite Rcpp urca vars]; }; available = derive2 { name="available"; version="1.0.0"; sha256="0w4i0ajw0p71k717v8hg9d8az08m8yl97w5lly87kli36p7mv30h"; depends=[cli clisymbols crayon desc glue jsonlite memoise purrr SnowballC stringdist tibble tidytext udapi yesno]; }; averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; }; aws = derive2 { name="aws"; version="1.9-6"; sha256="0mfq44pji0p6d7s1wbwi0f97lsh3f33wnj8fiyimpg9fv8lr4inz"; depends=[awsMethods gsl]; }; @@ -4426,7 +4460,7 @@ in with self; { aws_iam = derive2 { name="aws.iam"; version="0.1.7"; sha256="0hag8j5g8rqg39x4f6d8vwwzhz98cx7549xixfl9cxiff7x9sz2c"; depends=[aws_signature httr jsonlite xml2]; }; aws_lambda = derive2 { name="aws.lambda"; version="0.1.6"; sha256="16vis596clxn6h9j1k66224ikacsg0f9xrzqi5987nqlzrwskjgk"; depends=[aws_signature base64enc httr jsonlite]; }; aws_polly = derive2 { name="aws.polly"; version="0.1.2"; sha256="0ij0rbng8q7xfa08p4x1l1lcmskmz3fy2pvln28zxqbs6jbc22rm"; depends=[aws_signature httr jsonlite tuneR]; }; - aws_s3 = derive2 { name="aws.s3"; version="0.3.11"; sha256="0zb219xib86980gq00sam804m91448lsmcy4a3ac322sifmrpasc"; depends=[aws_signature base64enc digest httr xml2]; }; + aws_s3 = derive2 { name="aws.s3"; version="0.3.12"; sha256="1yfi9ihrd0hmzxklc86mf5hcwgzsb5c4p1i402vgpg5mfvcvp3rl"; depends=[aws_signature base64enc digest httr xml2]; }; aws_ses = derive2 { name="aws.ses"; version="0.1.4"; sha256="13hf4iqhnpkm9rnr7nzwky663vplnkjrgk90zix91cn2fvaspjgp"; depends=[aws_signature httr jsonlite]; }; aws_signature = derive2 { name="aws.signature"; version="0.4.1"; sha256="094d0jwg6433bdfkvs3r9mjvg61k78ff4ck0zhgyaz4aivlchm9j"; depends=[base64enc digest]; }; aws_sns = derive2 { name="aws.sns"; version="0.1.7"; sha256="0i8nn5jnykhsjwn4nsqdqbagankjc09zs8and54rkirdigzdny8v"; depends=[aws_signature httr jsonlite xml2]; }; @@ -4436,17 +4470,16 @@ in with self; { awsMethods = derive2 { name="awsMethods"; version="1.1-0"; sha256="1xywcadpjyzlw5f2k9sbr8fvrj3kcr1r6swi23lc952yrl3gvpkl"; depends=[]; }; awsjavasdk = derive2 { name="awsjavasdk"; version="0.2.0"; sha256="1461h565il4y68g0a3k7wgn9jyb6pys8405f780ldg6g44aa7p60"; depends=[assertthat R_utils rappdirs rJava]; }; awspack = derive2 { name="awspack"; version="0.1.6"; sha256="0pf6g9w2r2rm887sa3v0gfwia2w2q94m40m76sq66gb3spkmngd5"; depends=[aws_alexa aws_cloudtrail aws_ec2metadata aws_iam aws_lambda aws_polly aws_s3 aws_ses aws_signature aws_sns aws_sqs]; }; - aylmer = derive2 { name="aylmer"; version="1.0-11"; sha256="1b6dryvfz9yp00nj8lv8j1isnshcgwn9fx41knah9pw7dn4pxkk2"; depends=[Brobdingnag]; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bReeze = derive2 { name="bReeze"; version="0.4-2"; sha256="04zapsxb4lsi85m9qgrsm49yasf0b8wk0djdpa7xks4hjvmskfhq"; depends=[]; }; - bWGR = derive2 { name="bWGR"; version="1.5.2"; sha256="1ijz72zxxykscbsr4n1k66zjcy6zs9azgdyf2s5w8j291zy43gw6"; depends=[Rcpp]; }; + bWGR = derive2 { name="bWGR"; version="1.5.3"; sha256="0kgl29kmpdbzjhbwv8kdy2lygza06fb90hqr7vwbgyl4fw049k9p"; depends=[Rcpp]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babynames = derive2 { name="babynames"; version="0.3.0"; sha256="018wyajdkpvcywcvkna57m5sqnsh7i9zq2hqlyb8q93mgyb3ddzm"; depends=[tibble]; }; backShift = derive2 { name="backShift"; version="0.1.4.2"; sha256="1nj7mcdpzfzq68qg86rrys752gzw69n99yyb0jzg6r8qrgpcxj49"; depends=[clue ggplot2 igraph MASS matrixcalc mvnmle reshape2]; }; backblazer = derive2 { name="backblazer"; version="0.1.0"; sha256="020kdydksm0brnxsa00blf5sylxd4hz49wmngk1x1fx43kdlyc41"; depends=[httr jsonlite openssl]; }; - backpipe = derive2 { name="backpipe"; version="0.1.8.1"; sha256="1nid5rbgwiq8axkrl2gwl4vr5bjq5k5nrhq7macddvijcn3r2dz8"; depends=[]; }; + backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; backports = derive2 { name="backports"; version="1.1.2"; sha256="0mml9h3xagi7144pyb3jj9zbh9qzns7izkhdg7df20v7bikr6nz8"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; @@ -4456,7 +4489,7 @@ in with self; { bairt = derive2 { name="bairt"; version="0.1.2"; sha256="17nc0lp0bzwshik33v0gq5d6nd2gvm4799b7rfiq089zhnzv90kj"; depends=[coda mvtnorm shiny shinyjs]; }; baitmet = derive2 { name="baitmet"; version="1.0.1"; sha256="02ydakqr8v41hdnhcsgigwnic8d48qswryg1srb5w1fqdmdglnkl"; depends=[erah HiClimR Rcpp signal XML]; }; ballr = derive2 { name="ballr"; version="0.2.0"; sha256="1f5fclmgp0pznahr3ix7xiixqah01jmh2g6fvrqyi6xcin8ynwqc"; depends=[dplyr janitor lubridate magrittr rlang rvest xml2]; }; - bamboo = derive2 { name="bamboo"; version="0.9.19"; sha256="1k81r06kw50w6lm0vi6xwjymc4l13abagrn5b6czcyki3i6pwqc2"; depends=[rscala]; }; + bamboo = derive2 { name="bamboo"; version="0.9.22"; sha256="1fajc4880wkpxjdgh41r2fq95dllpk1irbrkvrrwvb0pf3zbmjsl"; depends=[rscala]; }; bamdit = derive2 { name="bamdit"; version="3.1.0"; sha256="148ikj7mly8m6kxs2n4gidi7kb70i3x2vbf9xsllrf0cgvrjccps"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; bamlss = derive2 { name="bamlss"; version="1.0-0"; sha256="0wa54f5zyjyplys29cqhrasc6qa8p5znfal2ihp0qhhs46wzsk4y"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; banR = derive2 { name="banR"; version="0.2.0"; sha256="0m71m99f8f4wckylry6z16gw6r2cc4wxbd9287ns00jr6s13x6c8"; depends=[dplyr httr magrittr purrr readr rlang stringr tibble]; }; @@ -4466,13 +4499,13 @@ in with self; { banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; - bartMachine = derive2 { name="bartMachine"; version="1.2.4.1"; sha256="0awshy5djs6f6v77g9f4xcmg9pg3zs650bzql3nvfxw5d0zdnbzb"; depends=[bartMachineJARs car missForest randomForest rJava]; }; + bartMachine = derive2 { name="bartMachine"; version="1.2.4.2"; sha256="100zcpbndbps01qnybrgmsfnh37j93661l4v7zcin0i56cvgg998"; depends=[bartMachineJARs car missForest randomForest rJava]; }; bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.1"; sha256="1wpfzrb6mrx3xmxy4rgnwygmpqq2l4ki2xqr4m51g1bl9nwirhzj"; depends=[rJava]; }; basad = derive2 { name="basad"; version="0.2.0"; sha256="1qc2amkrjrgdqys275p82lmbpjszm5rzjdpri7hqc9d8b8q1vc9q"; depends=[Rcpp RcppEigen rmutil]; }; - base2grob = derive2 { name="base2grob"; version="0.0.2"; sha256="0mknr1kdy2vpa8cj18crr98sp22qj27bb1g3mrm64azchsqr5k64"; depends=[gridGraphics]; }; + base2grob = derive2 { name="base2grob"; version="0.0.3"; sha256="1hs9qym2hwq3wrknsfpmn9dvbxs3vyiqs3yfcb26knxqlv3qqw3j"; depends=[ggplotify]; }; base64 = derive2 { name="base64"; version="2.0"; sha256="1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; - base64url = derive2 { name="base64url"; version="1.3"; sha256="1azik4yqafay4m2panbnyyf7cq5qb2qjv74ikhb8rljbsgv2xchd"; depends=[backports]; }; + base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; }; baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; }; basefun = derive2 { name="basefun"; version="1.0-1"; sha256="0qiszm71alh7p3inhiv9prdl4f5l45ny8plz2fm7l5h51z5xj54r"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; }; @@ -4483,7 +4516,7 @@ in with self; { batade = derive2 { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive2 { name="batch"; version="1.1-5"; sha256="0wdgfvk2i542cqg34ikvzwlix09f2jyjb32a0f4zh9vg9nrywswq"; depends=[]; }; batchmeans = derive2 { name="batchmeans"; version="1.0-3"; sha256="1qkdljngvlahk0pbrkarkjh2g4sxxwiva9f3m5y8gz8pjw9fpy9n"; depends=[]; }; - batchtools = derive2 { name="batchtools"; version="0.9.8"; sha256="1ch03hj8ahkfc9sr4gv985s6zzxk5xm2dbm0hm8xjygkqkd8r5n9"; depends=[backports base64url brew checkmate data_table digest progress R6 rappdirs stringi withr]; }; + batchtools = derive2 { name="batchtools"; version="0.9.10"; sha256="0qgjag82z7s6s35lccpidkq5rivkz03gnmcggrgaa9vskv0w6q62"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; bayesAB = derive2 { name="bayesAB"; version="1.1.0"; sha256="0g74n6jvpmb2sbmywcagb10rk8sd3pxzkw9s8s6qpg34q58v01a6"; depends=[ggplot2 Rcpp]; }; @@ -4493,7 +4526,7 @@ in with self; { bayesDem = derive2 { name="bayesDem"; version="2.5-1"; sha256="1cxrqil1p692mbzkcj1fvsx335qyy6c1y43mq48s4shs1hhc69bn"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.3"; sha256="1480mmzfshchfbfh3x420cq5qblfh59jkl21hkq2jvnwppksdn9w"; depends=[coda mvtnorm]; }; bayesGDS = derive2 { name="bayesGDS"; version="0.6.2"; sha256="0ash16hmassn76x3f59dfvp4plqp8vb17qzcwmag7vi3mi3y2ap6"; depends=[Matrix]; }; - bayesImageS = derive2 { name="bayesImageS"; version="0.5-1"; sha256="1p4l3i57xm8yrczdiz4nxmd8qv0pv0chlrpvndfn3fnjbcx2cfa2"; depends=[Rcpp RcppArmadillo]; }; + bayesImageS = derive2 { name="bayesImageS"; version="0.5-2"; sha256="01gnjxrp68jxrygijk6v42dsiyfkxawvj4ilh0sajm05iknkn419"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="3.2-0"; sha256="1a3x3y77542hgndvymhnyg6dys0s5rimkgprl8psflsgsrxnbmcv"; depends=[bayesTFR car coda hett wpp2017]; }; bayesLopod = derive2 { name="bayesLopod"; version="1.0.1"; sha256="0v9yy75mvr74jc0fz10qj1acwxjy0lbqkdqaj1hn88v294r9dw3q"; depends=[BH inline raster Rcpp RcppEigen rgeos rstan rstantools slam sp StanHeaders]; }; bayesPop = derive2 { name="bayesPop"; version="6.2-4"; sha256="1z8s5lbvz642hxl10b4cv361izw82akq40dav3mknqqcgv1vlrk6"; depends=[abind bayesLife bayesTFR fields googleVis plyr reshape2 rworldmap wpp2012 wpp2017]; }; @@ -4502,10 +4535,10 @@ in with self; { bayesTFR = derive2 { name="bayesTFR"; version="6.1-2"; sha256="092sl8xk82kybpp0v06j0dxh4zal0d6j2na42ghl2ri36iy6wqvx"; depends=[coda MASS mvtnorm wpp2017]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; - bayesboot = derive2 { name="bayesboot"; version="0.2.1"; sha256="0gd3in9z8kx3d29dvyd8blmhlc7wxxl5b2hxnrrq0w13jcnsn57w"; depends=[HDInterval plyr]; }; + bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; - bayeslm = derive2 { name="bayeslm"; version="0.7.0"; sha256="132dli5lfxdghiz6g9jlzvbb71il0yv679947xrzfy68hln85d40"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; + bayeslm = derive2 { name="bayeslm"; version="0.8.0"; sha256="1gvqkbz1wmqkxjwkdgj5pir5j1qy5dzjm4jv6mz3mplm16z5vzbl"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; bayesm = derive2 { name="bayesm"; version="3.1-0.1"; sha256="04b4s8clxrmdyhnhd2arnsdi992422yam3z91w6dzrmngwxq4yaq"; depends=[Rcpp RcppArmadillo]; }; @@ -4514,7 +4547,7 @@ in with self; { bayesplot = derive2 { name="bayesplot"; version="1.5.0"; sha256="1f0kgrgr87fp9576ssrygkp5n4186zq1rw5iwzhqr8s81is352li"; depends=[dplyr ggplot2 ggridges reshape2 rlang]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; - bayou = derive2 { name="bayou"; version="1.1.0"; sha256="1ndd7lygphngvn4a432616f6anmhxbdzmkksrhpl76xvrw5agwkc"; depends=[ape coda denstrip fitdistrplus foreach geiger MASS mnormt phytools Rcpp RcppArmadillo]; }; + bayou = derive2 { name="bayou"; version="2.1"; sha256="0biziarmamdpapv2p2ylvxqa4mcdvdwbay545w51yb73538bgkb8"; depends=[ape assertthat coda denstrip fitdistrplus foreach geiger MASS Matrix mnormt phytools Rcpp RcppArmadillo]; }; baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; }; bazar = derive2 { name="bazar"; version="1.0.6"; sha256="12b1x218x1yh9iadv8ciyncr841s0arvj4pbn74bryhcgbvmbwqm"; depends=[kimisc]; }; bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; @@ -4528,7 +4561,7 @@ in with self; { bcgam = derive2 { name="bcgam"; version="1.0"; sha256="1dg2fcjw8xal77irviiz260qpar2iqkjvi2k4qfm71jyq0ir0axk"; depends=[coda igraph nimble]; }; bclust = derive2 { name="bclust"; version="1.5"; sha256="01kx02azj26b6swly53zhf3sny6c6jglkxnzylsc0pvri89x7yj2"; depends=[]; }; bcmaps = derive2 { name="bcmaps"; version="0.17.1"; sha256="12hca67n7fqplis8g954hj588zl9kj8gmph86mxhcy151qpyh927"; depends=[httr rappdirs sf]; }; - bcp = derive2 { name="bcp"; version="4.0.1"; sha256="1cw7gnkskzwql55bxfrxajsi828zj7rjn7my7dk8lkdqz7n3lsgb"; depends=[Rcpp RcppArmadillo]; }; + bcp = derive2 { name="bcp"; version="4.0.2"; sha256="0ixpjhyyqaz7gc2ixpask062sxhsfg8d146mm244jkqgiagydg5l"; depends=[Rcpp RcppArmadillo]; }; bcpa = derive2 { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; }; bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; }; bcrm = derive2 { name="bcrm"; version="0.4.7"; sha256="0s0xmmphrrsqnrsnnsqh9ska6afl4jyk0s0290w6askrlqdzjgil"; depends=[ggplot2 mvtnorm]; }; @@ -4548,17 +4581,18 @@ in with self; { beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; beadarrayMSV = derive2 { name="beadarrayMSV"; version="1.1.0"; sha256="0785vmjsli37hjyppk7hlqmn0b683s1apysx9dghbw4h6rgvr8n9"; depends=[Biobase geneplotter limma rggobi]; }; beadplexr = derive2 { name="beadplexr"; version="0.1.0"; sha256="1aw75v4bjxrf22x0bm57qqp6r7cz8zmkd1hmk4amlxypbxd2479f"; depends=[cluster dplyr drc flowCore fpc ggplot2 lazyeval magrittr mclust purrr raster tibble tidyr yaml]; }; - beam = derive2 { name="beam"; version="1.0.1"; sha256="1xp8hqs1asg2a2lqzn88cxj0gs6qfwak54sy3kzc64kjp0r9lbl9"; depends=[fdrtool igraph knitr Matrix]; }; + beam = derive2 { name="beam"; version="1.0.2"; sha256="1gxgw4gcrlbxmlv5scddr6qh4df9xaj6zbs48k660qqn02gjxy9b"; depends=[fdrtool igraph knitr Matrix]; }; beanplot = derive2 { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; }; - beanz = derive2 { name="beanz"; version="2.1"; sha256="0lnjaka2cmkgc7id8njclmmkjb22v6gz9bkncq5n6zidawrczqp0"; depends=[BH loo Rcpp RcppEigen rstan StanHeaders survival]; }; + beanz = derive2 { name="beanz"; version="2.3"; sha256="1jxm1xspmyxsvmsgh5q3rykaxzqqw294pvv4vkq1p1qg1y6l1dnb"; depends=[BH loo Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; beast = derive2 { name="beast"; version="1.1"; sha256="0ikbnzdzp2lv1nh5mxxanra81v4dl6svg3ywqcqd6wgzri70a4ry"; depends=[RColorBrewer]; }; bedr = derive2 { name="bedr"; version="1.0.4"; sha256="052sn90gjr34hjgyndzvcl66pv22q0kjqbx95y1pdydiwhwmhpa3"; depends=[data_table R_utils testthat VennDiagram yaml]; }; - beepr = derive2 { name="beepr"; version="1.2"; sha256="0w4szy3rgj1bdcanxbcb9agyw38jqp0hc7qsn7j9700vh20zqbln"; depends=[audio stringr]; }; + beepr = derive2 { name="beepr"; version="1.3"; sha256="061sfld23b516jws4llml0a4jsdk4z74rll4z58l2rvahkqsdrfp"; depends=[audio stringr]; }; beeswarm = derive2 { name="beeswarm"; version="0.2.3"; sha256="0hy89bwv7jixlg91li1fywa77916am2whqp1m1fx1khd45g44581"; depends=[]; }; - beginr = derive2 { name="beginr"; version="0.1.0"; sha256="0zi2c6agkxx6aq7ih2c1z4r93fsjmqp2iymxllld0d7jcpp5qbv6"; depends=[cranlogs jsonlite]; }; + beginr = derive2 { name="beginr"; version="0.1.3"; sha256="1wrxcgapan19p2zwvmrz9fg9hwkxfm0x2qcqkanmn0mmsaixhs3h"; depends=[cranlogs]; }; behavr = derive2 { name="behavr"; version="0.3.1"; sha256="18rpln7db8cnaj6f47vjgh7q2xbcjmd0vhfbmvm82fr7qhdnnyc0"; depends=[data_table]; }; belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; - belg = derive2 { name="belg"; version="0.2.1"; sha256="0yl4d2zq01r0wcxdjz3v0zmhdj1g7nbw1kn56883vsv5izdliksv"; depends=[Rcpp RcppArmadillo]; }; + belg = derive2 { name="belg"; version="0.2.3"; sha256="1ss40fxfmzld4fqpbkc3knsxdqc4nmllgvl2v4nyqzcalcknzvvf"; depends=[Rcpp RcppArmadillo]; }; + bench = derive2 { name="bench"; version="1.0.1"; sha256="0hiwm3jbwr9wjdfx0nk3djskiw1q900h4acaqjgy97p8gl0ig3g8"; depends=[glue pillar profmem rlang tibble]; }; benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; benchmark = derive2 { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[ggplot2 plyr proto psychotools relations reshape scales]; }; benchmarkme = derive2 { name="benchmarkme"; version="0.6.0"; sha256="0w98q4b814bz3q0vqdfnwqrgfrky3ggsyyzmdiz17kv6xk17qds8"; depends=[benchmarkmeData doParallel foreach httr Matrix]; }; @@ -4569,8 +4603,9 @@ in with self; { benthos = derive2 { name="benthos"; version="1.3-5"; sha256="1mzhqqy4dblwv70v1ky5gzrr3jyky9k4wibbp589jjjrga2vhq2a"; depends=[dplyr lazyeval readr]; }; ber = derive2 { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; }; berryFunctions = derive2 { name="berryFunctions"; version="1.17.0"; sha256="13wslhr3xm9davx3s69as41r53m3x0gm3mrnwrbsqcbmf9n0zbv3"; depends=[abind]; }; - bestNormalize = derive2 { name="bestNormalize"; version="1.0.1"; sha256="0mlvaa35nsp19154g894xvfd6wg99lwxnfissf8yykwfl7fb265x"; depends=[LambertW nortest]; }; - bestglm = derive2 { name="bestglm"; version="0.36"; sha256="1das1qnczgw46hrjplfhw00wqjd8gxqsdr9s4zmc3k8qlzhb3ych"; depends=[glmnet grpreg lattice leaps]; }; + bestNormalize = derive2 { name="bestNormalize"; version="1.2.0"; sha256="0ixv5w4x4413131fxl47c3ma0h9ac1khakp89psnci4qjxbcx5xc"; depends=[LambertW nortest]; }; + bestglm = derive2 { name="bestglm"; version="0.37"; sha256="0ghhi4g75mgq2pnkrvw188s65132i1d7v3hahnjrsnx4vrr8a9lz"; depends=[glmnet grpreg lattice leaps pls]; }; + betaboost = derive2 { name="betaboost"; version="1.0.0"; sha256="11r6vywkb8182r1797aijm3czrxxghv5hjbadw61ick0masvcpml"; depends=[gamboostLSS mboost]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; @@ -4584,54 +4619,53 @@ in with self; { bezier = derive2 { name="bezier"; version="1.1"; sha256="1bhqf1zbshkf1x8mgqp4mkgdxk9jxi51xj6i47kqkyn9gbdzch0c"; depends=[]; }; bfa = derive2 { name="bfa"; version="0.4"; sha256="08n6446xl2w8z0rsqi6v2hp9cp744frxw6vrbxg5cpybhyyfzr36"; depends=[coda Rcpp RcppArmadillo]; }; bfast = derive2 { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; }; - bfp = derive2 { name="bfp"; version="0.0-38"; sha256="117rr680jjfn2xksqwhy7sx03cf5444jdgr9dzlr3bcc6pcxslx2"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-39"; sha256="1g3sbmi1yl7ai8v6a2ri54jqv64wzfy580s8i1w9xwbqjcrpj77m"; depends=[Rcpp]; }; + bfw = derive2 { name="bfw"; version="0.1.0"; sha256="13hbg2kr56yfg2r58cw3l631rq1kv8bk9gcdqbgspsjn04g1iq2f"; depends=[coda MASS rJava runjags]; }; bgeva = derive2 { name="bgeva"; version="0.3-1"; sha256="0qm4xknyab8hdyn3in2hsvm8s062cnmqqf41b5jvax1mi5hs0z8c"; depends=[magic mgcv trust]; }; - bglm = derive2 { name="bglm"; version="1.0"; sha256="1ln5clsfhpzjkm6cjil0lfqg687b0xxbvw1hcvangc0c0s314mrz"; depends=[mvtnorm]; }; bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; bgmm = derive2 { name="bgmm"; version="1.8.3"; sha256="09hsqjjyzlpl0fqb7832j5ydrr0yc42zb1c9q1y5hbrms7yp00p8"; depends=[car combinat lattice mvtnorm]; }; bgsmtr = derive2 { name="bgsmtr"; version="0.1"; sha256="09h118msqf9yl2z7d6dsvgn4vrvy43ynznajj58k7gkxdlm1nimg"; depends=[coda EDISON Matrix mnormt mvtnorm sparseMVN statmod]; }; bhm = derive2 { name="bhm"; version="1.13"; sha256="1iq1hjc7xn2kmmxgzv6mzcvvf48kqp5b8lavmzrqykak3v4z02nz"; depends=[coda survival]; }; bhrcr = derive2 { name="bhrcr"; version="1.0.0"; sha256="0rqn9wkd25d7l295n55idsf1zch1niz5f05qnsbd1gqrq7nw42xn"; depends=[AER Cairo MASS MCMCpack msm mvtnorm survival]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; - bibliometrix = derive2 { name="bibliometrix"; version="1.9.2"; sha256="0xv371k1n00awk3w7cjbiyf3wxkk5vch3hf7lp2yz3fsdy2jh91s"; depends=[factoextra FactoMineR ggplot2 ggrepel igraph Matrix RColorBrewer RISmed rscopus SnowballC stringdist stringr]; }; - bibliospec = derive2 { name="bibliospec"; version="0.0.4"; sha256="0abrbaw2knnlh8g5r4c2i6cc7a6ilfxry8zhscrx0x58irmp790b"; depends=[DBI RSQLite]; }; + bib2df = derive2 { name="bib2df"; version="1.0.1"; sha256="1rprcnqvs4nicd26h34kpgzlpl22430dikxs2q1sjf861qachi10"; depends=[dplyr httr humaniformat stringr]; }; + bibliometrix = derive2 { name="bibliometrix"; version="1.9.4"; sha256="0l2lqz9qx8f86dz2asvv11iv366hvjn2fjamgm98winrvyrzqnsw"; depends=[factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix RColorBrewer RISmed rscopus SnowballC stringdist stringr]; }; bibtex = derive2 { name="bibtex"; version="0.4.2"; sha256="0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"; depends=[stringr]; }; - biclique = derive2 { name="biclique"; version="1.0.1"; sha256="0wxvqjxc11ccvfnlnnb6gv6r74a48pg3yabsjynrg1m2kbynnqjf"; depends=[]; }; - biclust = derive2 { name="biclust"; version="1.2.0"; sha256="03vkj7zp3dl4zbv2gzv9pahcd1018lbv4ixghvv1g0fsbndrybdg"; depends=[colorspace flexclust lattice MASS]; }; + biclust = derive2 { name="biclust"; version="2.0.1"; sha256="1y5n6wfa1lx88ck3x09rcg0dh3pw89225h85hmq2la1s1fpa48i0"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; bife = derive2 { name="bife"; version="0.5"; sha256="0lzij8sazfdr687bi5lfp5ndvwlx18vyzr3svc0zv9mnv8s8vfvd"; depends=[Formula Rcpp RcppArmadillo]; }; bigFastlm = derive2 { name="bigFastlm"; version="0.0.2"; sha256="012vxy5mpknc3998h382qdzgrxnyfpyddy003zjp3v42clim5y64"; depends=[BH bigmemory Rcpp RcppEigen]; }; bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; - bigIntegerAlgos = derive2 { name="bigIntegerAlgos"; version="0.1.0"; sha256="1ik5daj2yc2shjkqypl4y6d53nmz170jvx0bdxn3hpm3g5crg1wd"; depends=[gmp]; }; + bigIntegerAlgos = derive2 { name="bigIntegerAlgos"; version="0.1.2"; sha256="1cbcxwhb25ismiyr95pfgc7nq14p4srd9y8y3g3xz0ywjs0qnjy5"; depends=[gmp]; }; bigKRLS = derive2 { name="bigKRLS"; version="3.0.0"; sha256="043lm32cams2hc0fg1mvq08r4ippy4s5z62n1616vndfmqsn41v8"; depends=[BH bigalgebra biganalytics bigmemory ggplot2 Rcpp RcppArmadillo shiny]; }; - bigQueryR = derive2 { name="bigQueryR"; version="0.3.2"; sha256="0l61yvvjlv1zgb1vyf1q3sj4dff1vi6lkf61hc9kqs5cvhqbf87y"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; - bigRR = derive2 { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[DatABEL hglm]; }; + bigQueryR = derive2 { name="bigQueryR"; version="0.4.0"; sha256="1b89yfa0gwd3frdh1z6ygxv2dfncb6g4lp67nh7hkm6r9xamfrxr"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigalgebra = derive2 { name="bigalgebra"; version="0.8.4"; sha256="19rv552ac0q9djc1yvpldkc0lipdf6q143m9dnndpsqs7ayqlr4g"; depends=[BH bigmemory]; }; biganalytics = derive2 { name="biganalytics"; version="1.1.14"; sha256="1hsqdg5hkhs6z9pwvn055q02hzpksjwrf33q5zdnkm387g188ca6"; depends=[BH biglm bigmemory foreach Rcpp]; }; + bigchess = derive2 { name="bigchess"; version="1.0.0"; sha256="14hjrma9qjyi9nypbvrqrzf6d1fxh4rrc48yq95vsrg7vr4han5x"; depends=[ff ffbase]; }; + bigdatadist = derive2 { name="bigdatadist"; version="1.0"; sha256="1xmralvhdczd270c2ym47ywc7gkqs247vpjr1vpmqsgiqvr7n1ql"; depends=[FNN MASS pdist rrcov]; }; biglars = derive2 { name="biglars"; version="1.0.2"; sha256="17zs25dvlja9ynx2fm5f4nmgkx4mnyqs5iscwsyahr6qigx1rz9x"; depends=[ff]; }; biglasso = derive2 { name="biglasso"; version="1.3-6"; sha256="044l2l34l4pl7ijwgq569cn8x5clj795qpfwb1b9qfwvggvgzgni"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; - bigleaf = derive2 { name="bigleaf"; version="0.5.2"; sha256="13x79i15jvv1bx4xnl9jakjmbxviac0gnrprax61c5afkaqxfxh4"; depends=[robustbase]; }; + bigleaf = derive2 { name="bigleaf"; version="0.6.5"; sha256="0l2a4xi9jyx9sd79fvva9rqqxb4mld99k0gycn07fb81m8lkf690"; depends=[robustbase]; }; biglm = derive2 { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; }; - bigmatch = derive2 { name="bigmatch"; version="0.1.0"; sha256="15qrm3kdp9wglmpsy58z117nj85j8zc6cmf5w1kydamk2c8x49c9"; depends=[liqueueR mvnfast plyr rcbalance]; }; + bigmatch = derive2 { name="bigmatch"; version="0.2.1"; sha256="0c2rg6fiphb01xz6lm34766gwz7m054bgismwbx6wscmw51nj7rw"; depends=[liqueueR mvnfast plyr rcbalance]; }; bigmemory = derive2 { name="bigmemory"; version="4.5.33"; sha256="0ycl9dzm3drpyas625h34rir5bnbjlncxlvawfsfmqwcbmwdjdvj"; depends=[BH bigmemory_sri Rcpp]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; bigml = derive2 { name="bigml"; version="0.1.2"; sha256="0vl5krjbgckknxwl26b2hn63jhb80zbn7abpckhxzxfxzncpnfz9"; depends=[plyr RCurl RJSONIO]; }; - bigpca = derive2 { name="bigpca"; version="1.1"; sha256="09rd8ryar8wiih50s6b246jf0idmi62fsi7ljysx7j0jarj3jyhz"; depends=[biganalytics bigmemory bigmemory_sri irlba NCmisc reader]; }; - bigrquery = derive2 { name="bigrquery"; version="0.4.1"; sha256="07hi5z8l2qm9cjfc9y1y5vjijkkwmxq1dgz3bvv578kasz6yjs11"; depends=[assertthat DBI httr jsonlite progress readr]; }; - bigsplines = derive2 { name="bigsplines"; version="1.1-0"; sha256="0jjlv9qidn8xrz630wbyq7kz7vlxgaphv2y2siv90j01j5nj4s89"; depends=[quadprog]; }; + bigrquery = derive2 { name="bigrquery"; version="1.0.0"; sha256="0z7wsqxla1pg2454l35kkfaz2s9hppwvpz1pds286ddldbbmyzis"; depends=[assertthat curl DBI glue httr jsonlite prettyunits progress rapidjsonr Rcpp tibble]; }; + bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstep = derive2 { name="bigstep"; version="0.7.4"; sha256="0g45fgnamdv1v3b8xvpsj4rzhisyvbbddwyzvzvmmi4a8w20pzn5"; depends=[bigmemory matrixStats R_utils RcppEigen speedglm]; }; bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; }; bigtcr = derive2 { name="bigtcr"; version="1.1"; sha256="1l03yc28afdm7glbw4ay0zsywjgqg5l90qz1hfhslsy8gg7d5wq5"; depends=[]; }; bigtime = derive2 { name="bigtime"; version="0.1.0"; sha256="136gy2i4qwa2drklllyzp3z0dbijlavgf3sxy73bf84df2yq1c9i"; depends=[corrplot lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; - bikedata = derive2 { name="bikedata"; version="0.1.1"; sha256="0vs1cal05a80zjz6gqfsxs616dqrq47vgk91mrdhca3b95ywxyfq"; depends=[BH DBI dodgr httr lubridate magrittr Rcpp readxl reshape2 RSQLite tibble xml2]; }; + bikedata = derive2 { name="bikedata"; version="0.2.0"; sha256="1iihf1nf3ybvkhq4j3c5p1271c56vpsmsrjf3q2r9n98g3apa6k2"; depends=[BH DBI dodgr httr lubridate magrittr Rcpp readxl reshape2 RSQLite tibble xml2]; }; bikeshare14 = derive2 { name="bikeshare14"; version="0.1.0"; sha256="12399c01s8p9rmpi3fpy4rm7xxnsf627slz3h234frbahhs882c4"; depends=[]; }; bild = derive2 { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv5cdndyxfsxp77l6nc3zc6ixna8"; depends=[]; }; billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; - billboarder = derive2 { name="billboarder"; version="0.2.1"; sha256="0xmkj6l3cpyyq23hp6jhfqllpg7gkksajnq25wyccqmypxjik8jv"; depends=[ggplot2 htmlwidgets jsonlite magrittr scales]; }; + billboarder = derive2 { name="billboarder"; version="0.2.2"; sha256="14jq3k2d0bsc2l8hsc2shps3hw6fq0k0w5m0yj9k4hbidgpg9z7n"; depends=[ggplot2 htmlwidgets jsonlite magrittr scales]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="2.1-1"; sha256="1rwmsrm4ghpvb1vldph2frwglfvajwyj7bzi1f6mhnm9mrg80blj"; depends=[partitions]; }; - binMto = derive2 { name="binMto"; version="0.0-6"; sha256="1h9s42wk848x15f4glhsh2iikpra64miwlia6xz5dqlzbs4vw86k"; depends=[mvtnorm]; }; + binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; }; binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; }; binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; }; binda = derive2 { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; }; @@ -4641,8 +4675,7 @@ in with self; { binequality = derive2 { name="binequality"; version="1.0.3"; sha256="0hhcmw1mq785zylcxghfnazi3xvnl7sqpqll8fqdk064a4drqkw1"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; }; binford = derive2 { name="binford"; version="0.1.0"; sha256="04mpdvynlm4gddybys04k0446gc9hyq0vaxr6a525p76ls5aw4b1"; depends=[]; }; bingat = derive2 { name="bingat"; version="1.3"; sha256="1y68rgafipfad78yrzcygdszgy1d5q739kap06pzr78bn3i8hiwa"; depends=[doParallel foreach gplots matrixStats network vegan]; }; - binhf = derive2 { name="binhf"; version="1.0-1"; sha256="0l8925bj6mjv2y7fn76zh2g8xjig3kbbdy4jl0ip3gd9kbrakl9k"; depends=[adlift wavethresh]; }; - binman = derive2 { name="binman"; version="0.1.0"; sha256="103f74gm124vw4rwbfrd5dlgca3v83kqd8m5j9z3ma3snh788mkx"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; }; + binhf = derive2 { name="binhf"; version="1.0-2"; sha256="040ss4jwqar4b5wb96gpi41xhmlqcbvs4vphxmfj8xs12hd7r6wl"; depends=[adlift EbayesThresh wavethresh]; }; binneR = derive2 { name="binneR"; version="1.1.1"; sha256="07cfcp9jj5bks8kmxvir9y9z7fj44hvy1wyrg4jy029dvkz8g2ki"; depends=[dplyr magrittr mzR plyr tidyr]; }; binnednp = derive2 { name="binnednp"; version="0.1.0"; sha256="0cfgz6828b2525dmph5n4zxdgkbx0nsrm4k2azhw1xfi3pz4z6ga"; depends=[fitdistrplus kedd mclust nor1mix Rcpp Rdpack]; }; binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; @@ -4658,48 +4691,49 @@ in with self; { bio3d = derive2 { name="bio3d"; version="2.3-4"; sha256="1zmswa9xs81lbrlkkgi8dvv9xpf0ynqjqwy1k36szvfb8ar9mczr"; depends=[Rcpp]; }; bioOED = derive2 { name="bioOED"; version="0.1.4"; sha256="1rjcqrni5xag97pxfsf40isr2c8pkqsvihf86phak8ngwl7qdgmc"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; + bioacoustics = derive2 { name="bioacoustics"; version="0.1.2"; sha256="0xhlmcfb7ll4w655dsq6vdjn6yl2imrw6da2xg5csk2s9yg059wq"; depends=[htmltools moments Rcpp stringr tuneR]; }; biofiles = derive2 { name="biofiles"; version="1.0.0"; sha256="1bglgl2jcp6jy3f7xwndil56i98xx4kn518s3fqdixw7n5ibmqd2"; depends=[assertthat BiocGenerics Biostrings foreach GenomeInfoDb GenomicRanges IRanges iterators Rcpp RCurl reutils S4Vectors XVector]; }; - biogas = derive2 { name="biogas"; version="1.10.0"; sha256="1il4r71h2a0xqpjs7q97ypdd12jmdnh0kqcs6j5gpjxdsmgnhlsy"; depends=[]; }; + biogas = derive2 { name="biogas"; version="1.10.3"; sha256="1qfidjwhaxg5zplzkldhj4zqg81xrcqmvh9x5km5yhyymzr6y4vs"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; biogram = derive2 { name="biogram"; version="1.4"; sha256="1kkim6dxmvvpby2ir280adl14jmrz7nsib3m8g2ki81d539km6il"; depends=[bit combinat entropy partitions slam]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.3"; sha256="1xl5q45s4amvinfzysf5za0myq1f76xvqhyza0b191bky5vk8qq1"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.2.1"; sha256="1dxpa549y6dqzmi8nk57x0blqmcz51v9hj0sy3g9laj9aj0rmyzz"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS rlang]; }; - biolink = derive2 { name="biolink"; version="0.1.3"; sha256="0cy9s9wg5rgwczqjfw6xp9ragqcj9gzp7icpm0nqwrdghsj7azjv"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; - biomartr = derive2 { name="biomartr"; version="0.7.0"; sha256="1gjl4xh9ryxsf3lhn4fqa3zw10yc0mwrfgkrbq117njsw988kms7"; depends=[biomaRt Biostrings curl data_table downloader dplyr httr jsonlite purrr RCurl readr stringr tibble XML]; }; + biolink = derive2 { name="biolink"; version="0.1.6"; sha256="1szsplhzrn660aw442ad73rwhmyqjwqq6faaz4bw86khsvxh993y"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; + biomartr = derive2 { name="biomartr"; version="0.8.0"; sha256="1i56j2fsnnnrmvqxkm9clswi85grh9ikv5zgvlmka8jj26qgkgw7"; depends=[biomaRt Biostrings curl data_table downloader dplyr httr jsonlite purrr RCurl readr stringr tibble XML]; }; biomod2 = derive2 { name="biomod2"; version="3.3-7"; sha256="0mbf6j4m7vvq82l1grmznfqirj1ynr6jzzlpx0s2wjd3hdbvgzia"; depends=[abind dismo earth gbm ggplot2 MASS maxent mda nnet PresenceAbsence pROC randomForest raster rasterVis reshape rpart sp]; }; bionetdata = derive2 { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; bioplots = derive2 { name="bioplots"; version="0.0.1"; sha256="184wp1jvgf7a80srrfq72a4r1la2psr8b16kxs00v2gcbgjyvr10"; depends=[ggplot2 gplots RColorBrewer reshape2]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap cluster e1071 rgl scales]; }; bioset = derive2 { name="bioset"; version="0.2.2"; sha256="1l2iss3rbzc69360r9i9j7nf0nn4fkj3j7bgc1hdabr32i19jkhh"; depends=[dplyr magrittr rlang tibble tidyr]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; - biospear = derive2 { name="biospear"; version="1.0.1"; sha256="03wsyzlxmqff6xvr10jy49p229xr6jjvr8kk93wm7wil7q6b7z42"; depends=[cobs corpcor devtools glmnet grplasso MASS Matrix mboost pkgconfig plsRcox pROC PRROC RCurl survAUC survival]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="3.1"; sha256="15y3ccmj1gslzc0lp0gvc66hf0yigx3zkqnw46crgrizjm2kmjay"; depends=[boot lattice MASS rpanel SpatialEpi tkrplot]; }; bipartite = derive2 { name="bipartite"; version="2.08"; sha256="16j70ikzprjsm81w9bqbp26xxf14ckw654dy7c5hkz24x62qsx2i"; depends=[fields igraph MASS permute sna vegan]; }; biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.1"; sha256="0k92z9iavvq5v56x2hgkmrf339xl7ns1pvpqb4ban8r1j8glzawi"; depends=[cluster dendroextras MASS rgl shapes tcltk2 tkrplot]; }; - birdnik = derive2 { name="birdnik"; version="0.1.0"; sha256="1ql29qbv7jw6cngd36qcgljx0zvvzp2v5rjd44v0j04gww1kb2bc"; depends=[httr]; }; + birdnik = derive2 { name="birdnik"; version="0.1.1"; sha256="17szs4yh3gmf6glwldbk9bhk6f40si2zv53zvgqmg3lbl3z09dv1"; depends=[httr]; }; birdring = derive2 { name="birdring"; version="1.3"; sha256="1vlivapmgq3kz2zz795c7hcfpibnqcfnxp7m42di37yngqc90q87"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; }; birk = derive2 { name="birk"; version="2.1.2"; sha256="07ck59m5mw897a60vmdn1b3qrmqj20qpfsn3093haqbpn8z13dmn"; depends=[]; }; birtr = derive2 { name="birtr"; version="1.0.0"; sha256="0bcxvj30wzwclw1lcyhvwj3k7awd39lrvzia1nrg53hw90bfs811"; depends=[]; }; bisect = derive2 { name="bisect"; version="0.9.0"; sha256="1dr95gnc9rb3i8603wspf0hznmvk5akk46nyf1bhv88mjz2i5q77"; depends=[]; }; bisectr = derive2 { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; }; - bisoreg = derive2 { name="bisoreg"; version="1.4"; sha256="1ianhk5vrzhwb9ymzvlx9701p5c4iasxyq7nhrvm815dm15rf2wf"; depends=[bootstrap coda monreg R2WinBUGS]; }; - bit = derive2 { name="bit"; version="1.1-12"; sha256="0a6ig6nnjzq80r2ll4hc74za3xwzbzig6wlyb4dby0knzf3iqa6f"; depends=[]; }; + bisoreg = derive2 { name="bisoreg"; version="1.5"; sha256="0zycdqvanb1lv8gm92lkz188pjaqxbb9658cw7vv43vn3np0rchx"; depends=[bootstrap coda monreg R2WinBUGS]; }; + bit = derive2 { name="bit"; version="1.1-14"; sha256="0m7jrqzpa1pk8ixcl814x06jf96nlvvr16x6did6cfk4zghsrfjw"; depends=[]; }; bit64 = derive2 { name="bit64"; version="0.9-7"; sha256="07znvz9vp1nz1y5ljng4qyskvm943cdbmy996s67560ijxzsm6kv"; depends=[bit]; }; bitops = derive2 { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; }; bitrugs = derive2 { name="bitrugs"; version="0.1"; sha256="0sqgp05b902mdldr4ckz4knmkbsqvgl1vx0l792cn2r437yqlgp3"; depends=[]; }; bivarRIpower = derive2 { name="bivarRIpower"; version="1.2"; sha256="0vgi0476rwali6k8bkp317jawzq5pf04v75xmycpmadb7drnpzy0"; depends=[]; }; - bivrp = derive2 { name="bivrp"; version="1.0"; sha256="0q00k24fssvjkgpndg84vdm7w9hswq593k6yjha4pl0a8bmnv6f8"; depends=[MASS]; }; + bivrp = derive2 { name="bivrp"; version="1.1"; sha256="0ycb3ppz8j6wd8ha52wy8xw0n5a5w4f46j6gk4hy151yslr00qay"; depends=[MASS]; }; + biwavelet = derive2 { name="biwavelet"; version="0.20.17"; sha256="183h9mdlpizikg1xnrnd03hbij4fnf5ibsad4jcfmh6d73qcgn9b"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; - bizdays = derive2 { name="bizdays"; version="1.0.5"; sha256="0yw53qzi2wbc33q5snmf7xsisfnknvf6pqr20npkwbh3999i1gk0"; depends=[]; }; + bizdays = derive2 { name="bizdays"; version="1.0.6"; sha256="1av96rj4fllfais9xwh1p8601xvsj0awfh9n2n1x5kzca966h8fq"; depends=[jsonlite]; }; + bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; }; bkmr = derive2 { name="bkmr"; version="0.2.0"; sha256="0dk6dn73bqlvwinn3aginls4533931xcr3h59k0w60yxs3v8yakv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; }; - blackbox = derive2 { name="blackbox"; version="1.1.7"; sha256="1qdj6wsgr623wnhc573krnhjx65d4k9y8i3n2l2lj1qpqd538ygw"; depends=[geometry lattice MASS nloptr numDeriv proxy rcdd Rcpp RcppEigen spaMM]; }; - blandr = derive2 { name="blandr"; version="0.4.3"; sha256="03w1k646izbrygcsynrzrph7crpqdqn58544mmm9zxfvkmsilpmi"; depends=[ggplot2 knitr]; }; + blackbox = derive2 { name="blackbox"; version="1.1.25"; sha256="1xjljxvh8jg5gnfwdb6f8ifn5s30dxjlnbal97kinq0ad33lvs48"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; + blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; blastula = derive2 { name="blastula"; version="0.2.0"; sha256="11vaqsfm0kszx3iq38c8vbqnwkfk77lv5021l2zq9iaxz9d83s7k"; depends=[commonmark downloader dplyr ggplot2 glue htmltools httr knitr magrittr purrr rlang stringr tibble tidyr]; }; - blavaan = derive2 { name="blavaan"; version="0.3-1"; sha256="1r5kararl5d8fk6zlawhyjpi1sc3xp1pd2cf83qmh9wbvdsfphwg"; depends=[coda lavaan loo MASS MCMCpack mnormt nonnest2 runjags]; }; + blavaan = derive2 { name="blavaan"; version="0.3-2"; sha256="0rbwdxajrzr43wmqjmxw2hh390inba6nj15yfwqr25ipw0l2mwl3"; depends=[coda lavaan loo MCMCpack mnormt nonnest2]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; - blighty = derive2 { name="blighty"; version="3.1-4"; sha256="1fkz3vfcnciy6rfybddcp5j744dcsdpmf7cln2jky0krag8pjzpn"; depends=[]; }; blink = derive2 { name="blink"; version="0.1.0"; sha256="0gi5dk2js3mssg2blji7yddrbmsynp9nr3qhzlpkpy15i81mg2xy"; depends=[plyr RecordLinkage stringdist]; }; blkbox = derive2 { name="blkbox"; version="1.0"; sha256="14bl0b5w46gb7v8p94df5r56nj849r7jqisajagvd1irda3vkc7z"; depends=[bartMachine caret dplyr e1071 ggplot2 glmnet gtools kknn knitr magrittr nnet pamr party plyr pROC randomForest reshape reshape2 rJava rmarkdown shiny shinyjs stringr tibble tidyr xgboost]; }; blkergm = derive2 { name="blkergm"; version="1.1"; sha256="0giknhcl14b4djn5k5v5n33b7bc3f8x6lx2h4jr25kpd89aynhq5"; depends=[ergm network statnet_common]; }; @@ -4710,25 +4744,25 @@ in with self; { blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; }; blockcluster = derive2 { name="blockcluster"; version="4.2.6"; sha256="0dskcwdh89a24j1lr829p9rrs88l13738b1gvsmsqrcrg9z955xc"; depends=[Rcpp rtkore]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; - blockmodeling = derive2 { name="blockmodeling"; version="0.3.0"; sha256="188m35gpf1lbs3yhqrdiz9zfmf3p4v6v0grzmax3d9w9n5g7rx2y"; depends=[doParallel doRNG foreach Matrix]; }; + blockmodeling = derive2 { name="blockmodeling"; version="0.3.1"; sha256="0cbx44mg5b9w1sz32wsgjprbss4mfx79sn6m42lvminf0023ds1r"; depends=[doParallel doRNG foreach Matrix]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.3"; sha256="1090vb26w6s7iqjcal0xbb3qb6p6j46a5w25f1wjdppd1spvh7f9"; depends=[]; }; - blocksdesign = derive2 { name="blocksdesign"; version="2.8"; sha256="0wgdgy705wpq0lh3k46ba7y8dzajgyfzcr87yvvzh610wr8vnsam"; depends=[crossdes]; }; - blockseg = derive2 { name="blockseg"; version="0.2"; sha256="183hjb66589qqjwf14rzdmy770biad73r0l5pkh6f4xk9xac1r62"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; }; + blocksdesign = derive2 { name="blocksdesign"; version="3.0"; sha256="17flj5glim3fa53k16p5pfl7dj12f76pgf4j6c1395xhn0qpww8i"; depends=[crossdes lme4]; }; + blockseg = derive2 { name="blockseg"; version="0.5.0"; sha256="1zc6mvkdwjz7n0yj46c610gz2d3rwsjchbzdcg7k56j06vc9w4lp"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 shiny]; }; blogdown = derive2 { name="blogdown"; version="0.6"; sha256="02ahyzcapsjaanjiz1j9jx2wh8w2fa7dwbraj5w7bl7bln87cs16"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; }; + blorr = derive2 { name="blorr"; version="0.1.0"; sha256="148x2ns7l9s7pb4ksg7h8ayn2lkr18gpfskvjasycccw1q44l8bk"; depends=[car caret checkmate cli clisymbols crayon descriptr dplyr e1071 ggplot2 glue gridExtra magrittr purrr Rcpp rlang scales shiny tibble]; }; blsAPI = derive2 { name="blsAPI"; version="0.1.9"; sha256="1p7s799kix396fbx8ap9vy9akwpaps37awr18qbj53n9qcm74wkp"; depends=[RCurl rjson]; }; - blscrapeR = derive2 { name="blscrapeR"; version="3.1.2"; sha256="1k5g1j4n071pmh2z5lpgkll2i1abpq1h9qialdszak794x8km605"; depends=[dplyr ggplot2 httr jsonlite magrittr purrr stringr tibble]; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; }; bmem = derive2 { name="bmem"; version="1.5"; sha256="1miiki743rraralk9dp12dsjjajj3iizcrfwmplf6xas6pl8sfk6"; depends=[Amelia lavaan MASS sem snowfall]; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; - bmixture = derive2 { name="bmixture"; version="0.7"; sha256="0x876wsahm0k3v900rkvvl2sma3awkhbrsfygikk1wskh3snqbsj"; depends=[BDgraph]; }; + bmixture = derive2 { name="bmixture"; version="1.2"; sha256="1qyxjjhwd82a4y53nj9ww4c74hrp1v2p4ii71pa59n0pq9xkqj01"; depends=[BDgraph]; }; bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; }; - bmlm = derive2 { name="bmlm"; version="1.3.5"; sha256="091yjllx4kfngaam1ac8rxcx547k7s7qa75pb5350qkr096pvsvs"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; + bmlm = derive2 { name="bmlm"; version="1.3.6"; sha256="0fjxz5p698izhfg14kizm04s1wslnkr8l2l19x3pz6qx8a2dcsgq"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; bmotif = derive2 { name="bmotif"; version="1.0.0"; sha256="1zjwlsimihszg8gg7mvvi8xmzvlsdph9x6524gb28jmd24xb4gwj"; depends=[tensor]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="3.7"; sha256="1lv4bcjri95nh4yqcp9hd3ad90lcp2drh1dwfn99i3344yw196x2"; depends=[LowRankQP lpSolve matrixStats]; }; - bnclassify = derive2 { name="bnclassify"; version="0.3.4"; sha256="0gjca802l3lvxy1ri8qff51mrgzj8ng0lk97kb4harvrsqx3i1wi"; depends=[assertthat entropy graph matrixStats RBGL rpart]; }; + bnclassify = derive2 { name="bnclassify"; version="0.4.0"; sha256="02xs0qn2bmkjw48w1m4d424x8wncgvh8kk1d1jx5r2mv04h32rs7"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bnlearn = derive2 { name="bnlearn"; version="4.3"; sha256="11zp8vf79h5a6dyijazld199pzp1lsgk3x049ykgy0bqjx2ivfvq"; depends=[]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; @@ -4737,39 +4771,37 @@ in with self; { bnspatial = derive2 { name="bnspatial"; version="1.0.3"; sha256="018rb5wacjk8igyc0qbp9rk3vjz3lffx81awlba8d2npiaxq6jbv"; depends=[doParallel foreach gRain gRbase raster]; }; bnstruct = derive2 { name="bnstruct"; version="1.0.2"; sha256="0n4gn1vhka694wdzignawyaca0rx2l0wjgw09fw42bkrswfjvxy1"; depends=[bitops igraph Matrix]; }; boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; - boclust = derive2 { name="boclust"; version="0.1.2"; sha256="0p6wx053yrq5cff2djqc341pj9q550b870rngspdlbqb0m4k6lr4"; depends=[d3heatmap DT genefilter ggplot2 psych reshape2 Rtsne shiny venn]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1"; sha256="0gqrjscgq4qgk7yl32w0965yscc1py9klr49s8q8hkzyihlwzim2"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; }; bold = derive2 { name="bold"; version="0.5.0"; sha256="0gdmb3zsspcp594d32yzqhdpw4dwg7a3pfm7kgbghz368yw662gl"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; - bomrang = derive2 { name="bomrang"; version="0.1.4"; sha256="00pzhqqk037hc8zl52f185lnj058vg2adzg0fsndvp83h2wghnd7"; depends=[curl data_table dplyr foreign hoardr httr janitor jsonlite magrittr raster readr rgdal rvest tidyr xml2]; }; + bomrang = derive2 { name="bomrang"; version="0.2.1"; sha256="1xivym3imf9gyp88yangyh0023sycy4n8iy578msikjk487iq0w9"; depends=[curl data_table dplyr foreign hoardr httr janitor jsonlite magrittr raster readr rgdal rvest tidyr xml2]; }; bookdown = derive2 { name="bookdown"; version="0.7"; sha256="1b3fw1f41zph5yw3kynb47aijq53vhaa6mnnvxly72zamyzdf95q"; depends=[htmltools knitr rmarkdown tinytex xfun yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.3.2"; sha256="0vkivgjfmqy2xfs75w8ylkpgcvca294q61jrhbpg24vnll3c281n"; depends=[bookdown knitr yaml]; }; - boolean3 = derive2 { name="boolean3"; version="3.1.6"; sha256="00s6ljhqy8gpwa3kxfnm500r528iml53q364bjcl4dli2x85wa9p"; depends=[lattice mvtnorm numDeriv optimx rgenoud rlecuyer]; }; boostSeq = derive2 { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; }; boostmtree = derive2 { name="boostmtree"; version="1.2.1"; sha256="0k79zfkck1plcd51sk6i8n5qh7hpnhchkqqhjn460hf0rl2mcjab"; depends=[nlme randomForestSRC]; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; boot = derive2 { name="boot"; version="1.3-20"; sha256="0ai1qpm0p4z07xr0dvag8sdn9jrxcwanrsk9khzmww094jvr1jxd"; depends=[]; }; bootES = derive2 { name="bootES"; version="1.2"; sha256="0hcaw1v80zspdsy4wr464lmgq33807i2f6n2dc3r7qqwa80g4zz0"; depends=[boot]; }; bootLR = derive2 { name="bootLR"; version="1.0"; sha256="1asf4yxy3abfkgqqg89mv9r2iifc5bgcjipy5idni0lvwfjashnd"; depends=[boot]; }; - bootRes = derive2 { name="bootRes"; version="1.2.3"; sha256="0bb7w6wyp9wjrrdcyd3wh44f5sgdj07p5sz5anhdnm97rn1ib6dz"; depends=[]; }; + bootRes = derive2 { name="bootRes"; version="1.2.4"; sha256="1lzj154qqqxqg6q2bjnzba8hlcx473i9cpp8kkjkpy7k87fgpm7v"; depends=[]; }; bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; bootcluster = derive2 { name="bootcluster"; version="0.1.0"; sha256="1mx08p0csz06mq55bdg4vgnqa9khdgqrz4jnm48c24pg8rpaj98b"; depends=[cluster flexclust fpc mclust plyr sets]; }; bootnet = derive2 { name="bootnet"; version="1.0.1"; sha256="1r5kbcycdlb8g4zs5vsrmcxl20a6x2kj47ybz6h1s83rqiylxg1b"; depends=[abind corpcor dplyr ggplot2 gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm parcor qgraph relaimpo tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; - bootsPLS = derive2 { name="bootsPLS"; version="1.1.1"; sha256="0ypffscbv7l13kwbgvz18smfass49sqrmivnbb84qiq91wr5frnm"; depends=[mixOmics]; }; + bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2017.2"; sha256="08lmsy7k8wsgv89yc904c6fidcymr1ma2ry4fl0p69p21v4iiwa4"; depends=[]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; - boral = derive2 { name="boral"; version="1.5"; sha256="1h1vf4j8p1vmhhqsrrn8jn0gynxjvkykm7f4jpsiivkfh69b0w95"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; + boral = derive2 { name="boral"; version="1.6.1"; sha256="1336nfgr5ni42pkikknlrhiqfi6avyl54ik2173vaxkgxcrlypzz"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; - boxcoxmix = derive2 { name="boxcoxmix"; version="0.15"; sha256="0qvlk3kcvqzrak2rvf41fs8421fpfh3ch51rq0c9ac62x2dkfidh"; depends=[qicharts statmod]; }; + boxcoxmix = derive2 { name="boxcoxmix"; version="0.20"; sha256="1s6mkybr88dkn9mandmfrd0j7r3zrfjqgrdfywv54lasl1gcijzk"; depends=[npmlreg qicharts statmod]; }; boxoffice = derive2 { name="boxoffice"; version="1.1.0"; sha256="08b897dp5cfv6f30k2pdvh8y5n1981msnjr6lfs4dzfc1i6y2zfy"; depends=[httr rvest]; }; - boxplotdbl = derive2 { name="boxplotdbl"; version="1.2.2"; sha256="01bvp6vjnlhc4lndxwd705bzlsh7zq0i9v66mxszrcz6v8hb9rwi"; depends=[]; }; + boxplotdbl = derive2 { name="boxplotdbl"; version="1.3.0"; sha256="1y1b45q69sxbszd83s8ch10z4i55h34ixm8q7yxr7byx3px8y65n"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.4"; sha256="0wx3x65rk1ma8bw5h4yskr7ii95ynkm7il22l1bj34kv9f4bfyj3"; depends=[assertthat bit64 digest dplyr httpuv httr mime rio stringr]; }; bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; - bpca = derive2 { name="bpca"; version="1.2-2"; sha256="05ldz6b2s379mymj8jzvia9x6gj047gwsxvnv3zj9x8b1hvndnd6"; depends=[rgl scatterplot3d]; }; + bpca = derive2 { name="bpca"; version="1.3-0"; sha256="16a7b94nk5psnm435vrwilcsria9mhr5d31fwzxy53pzp8n78kcr"; depends=[rgl scatterplot3d]; }; bpcp = derive2 { name="bpcp"; version="1.3.4"; sha256="0l4x3n7lcwinnrh2sy386grisj1x7k1d5hll1k4bljg01p7lb475"; depends=[]; }; bpkde = derive2 { name="bpkde"; version="1.0-7"; sha256="1ls6rwmbgb2vzsjn34r87ab8rnz3ls61g6f4x3jpglbk0j91f0h8"; depends=[]; }; bpnreg = derive2 { name="bpnreg"; version="1.0.0"; sha256="0mpwrhbbbw8m3cz0fl0x9j9m3n9zfdamnw83mmg4bjd0wmxkkm90"; depends=[BH haven MASS Rcpp RcppArmadillo]; }; @@ -4778,50 +4810,51 @@ in with self; { braQCA = derive2 { name="braQCA"; version="1.0.0.1"; sha256="1chyy8sk3iqs54sqg79dp1vjz3gcvnbzqbmgasdynir38b45scjh"; depends=[bootstrap dplyr QCA]; }; braidReports = derive2 { name="braidReports"; version="0.5.3"; sha256="107c9lrzb55dw5pal8qqpn8is3nrh19vfngx3zcfpmc49f06kskq"; depends=[braidrm ggplot2]; }; braidrm = derive2 { name="braidrm"; version="0.71"; sha256="1cn0rdlw775pmzbjmhny7gkm901a3qgz7infqb5s9az606xg54d3"; depends=[]; }; - brainGraph = derive2 { name="brainGraph"; version="2.0.2"; sha256="14jj4da2l92fgv924a8s4kw39vhxafaxj6pgwpxw86d5bqmc994g"; depends=[abind ade4 boot cairoDevice data_table expm foreach ggplot2 ggrepel gridExtra Hmisc igraph MASS Matrix mediation oro_nifti permute RcppEigen RGtk2 scales]; }; + brainGraph = derive2 { name="brainGraph"; version="2.2.0"; sha256="10bqlwrhqjzj1bqv8r77rrqjrxqbwfmzyand47bv4vb00g1wyq3x"; depends=[abind ade4 boot data_table expm foreach ggplot2 ggrepel gridExtra Hmisc igraph MASS Matrix mediation oro_nifti permute RcppEigen scales]; }; + brainKCCA = derive2 { name="brainKCCA"; version="0.1.0"; sha256="1ag3qahlba4h4126873hg2bbi6sr729mhiw22gjgr4g4jg6lhh09"; depends=[brainR CCA elasticnet kernlab knitr misc3d oro_nifti rgl]; }; brainR = derive2 { name="brainR"; version="1.5.1"; sha256="0ih4vwy445ciyyvf8snm42vg7rzzf6vn9qkbhj0yyd8sy88mgyss"; depends=[misc3d oro_nifti rgl]; }; brainwaver = derive2 { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; }; brant = derive2 { name="brant"; version="0.2-0"; sha256="1hdwdrdl6ad112zd7q248am3qk19alnj647nrk9xxxgd7s6a9pnb"; depends=[MASS Matrix]; }; brazilmaps = derive2 { name="brazilmaps"; version="0.1.0"; sha256="1nvd8x4m4m3966qph6390kqwpsrv7vy4yf6pam98xxkjbl9a41nf"; depends=[dplyr ggplot2 magrittr sf sp]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; - breakDown = derive2 { name="breakDown"; version="0.1.5"; sha256="0m9lpd42ypspkwgwfi0pxkhg4xkrnzirm9d9rjxxf1a6y741ijl2"; depends=[ggplot2]; }; + breakDown = derive2 { name="breakDown"; version="0.1.6"; sha256="13vcqcrm8h4bwr6rd24z0q0nbx2bpxkg39irhv2aybjg3ll8xq77"; depends=[ggplot2]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; breakaway = derive2 { name="breakaway"; version="3.0"; sha256="0y3h7gifv279z3x77jmr97c0i3vy58m5wsr8pa2vyn26m02rbkpc"; depends=[]; }; breakfast = derive2 { name="breakfast"; version="1.0.0"; sha256="0p0svsqphd5w99pf5c5jmak1xxl8md881lapa8aps9xr73m4x6lf"; depends=[plyr]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; - breathtestcore = derive2 { name="breathtestcore"; version="0.4.0"; sha256="04vi9rlb5lkml91jv55v3dyyqcjp9ly760sshpsv9lpbwq47ch7c"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; - breathteststan = derive2 { name="breathteststan"; version="0.4.0"; sha256="13wqb33gvzmjpgzqyyadydz5hnqcran80azaxbixj7wga0c35pqq"; depends=[BH breathtestcore dplyr purrr Rcpp RcppEigen rstan StanHeaders stringr tibble tidyr]; }; + breathtestcore = derive2 { name="breathtestcore"; version="0.4.1"; sha256="1wd5csdkq9i78l2d9rgp2fp2sw81n0bgi0ssfd447rw6c67x4539"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; + breathteststan = derive2 { name="breathteststan"; version="0.4.1"; sha256="0jmc3984827v656h5zk1rkpbyk56cziandsdz689brw85m01kn1l"; depends=[BH dplyr purrr Rcpp RcppEigen rstan StanHeaders stringr tibble tidyr]; }; brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; brglm = derive2 { name="brglm"; version="0.6.1"; sha256="17r3az6za98v2r06aak77kypdaqssc9wxcc6m6vb20y7xm8dp1mp"; depends=[profileModel]; }; brglm2 = derive2 { name="brglm2"; version="0.1.8"; sha256="017m7nlh29p271dhvx19l6042qfs48hqs947kjmpc7ykzv5461y3"; depends=[enrichwith lpSolveAPI MASS Matrix nnet]; }; - bride = derive2 { name="bride"; version="1.3"; sha256="03k9jwklg1l8sqyjfh914570880ii0qb5dd9l0bg0d0qrghbj0rk"; depends=[]; }; bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; bridgesampling = derive2 { name="bridgesampling"; version="0.4-0"; sha256="1gv2h2wgj1ym7qpmxmj5s3q2xsz217ijwdx70qnh4ijvacsvaxwm"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; - briskaR = derive2 { name="briskaR"; version="0.1.1"; sha256="0w614lb94vim6wlzj13gnfgkq0vg9fjlvwvvs11pnqq501qn2hzl"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; + briskaR = derive2 { name="briskaR"; version="0.1.2"; sha256="1y9sabj7pfgyvv6s3bbvrb0xhjhwc4pcfsfx847kqdajid92qx8w"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.5"; sha256="14dnmh062fw11bm236ilaqs6ss4ywajvsk3sxj0zwqk2bjf7y7vh"; depends=[boot brglm MASS profileModel Rcpp]; }; brm = derive2 { name="brm"; version="1.0"; sha256="0h4kgig28hkqv1amadznc0n9256dx613rxbn8s8si11ygx79x2dd"; depends=[]; }; - brms = derive2 { name="brms"; version="2.2.0"; sha256="1wdf5bka51pwdzniwmi6vwry1lms27124zbrmzm7f7b9k6bsqv3k"; depends=[abind bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; }; + brms = derive2 { name="brms"; version="2.3.1"; sha256="134qixmk9r5bq6zmbyrhzyrrd60ihn5m7nkvblj7im9n8gh415wl"; depends=[abind backports bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; }; brnn = derive2 { name="brnn"; version="0.6"; sha256="0q3f3cbl89hgpav7bn54s13cysgz8fi0zm8byc9rgz0sqkjrxval"; depends=[Formula]; }; broman = derive2 { name="broman"; version="0.67-4"; sha256="1jv1543zq74zjdrmhkcrjwxhn9bmsmmwadd9rjnn18svnrbnlq0g"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; - broom = derive2 { name="broom"; version="0.4.4"; sha256="081x87sy6dmfvkgwfjrl5ax51k77ciyzg9x3xql25vdi92rmwj3m"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; - brotli = derive2 { name="brotli"; version="1.1"; sha256="1jdhc03ycafjm6zfl9m95pd3krkb94mq2lhfjchfjc876mbam8x6"; depends=[]; }; + broom = derive2 { name="broom"; version="0.4.5"; sha256="1mrrqqw1bmjf2v88ziqwb5y86g29h0a3rsx2jpw0hrzrzb8i5kcb"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; + brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; - brranching = derive2 { name="brranching"; version="0.2.0"; sha256="0y99px2m02rl60qgf6pjbjv6isp8v1w9sny6p2icgsx4bwxjxmns"; depends=[ape curl httr phytools taxize]; }; - brt = derive2 { name="brt"; version="1.2.0"; sha256="04srx4xfx89lg79krckazlfq0hqph39h01sg6fk1ra8fv2xrcnw4"; depends=[ggplot2]; }; + brranching = derive2 { name="brranching"; version="0.3.0"; sha256="1mpjcp4x3gcc38irflldv0szznp7jazdn62niwvifinzhq4k7pkb"; depends=[ape crul curl phytools taxize]; }; + brt = derive2 { name="brt"; version="1.3.0"; sha256="13fn2mv66fys7w0xchh69sb6jggg5c2imk1psi3mlr1902m6ss5m"; depends=[ggplot2]; }; + bs4Dash = derive2 { name="bs4Dash"; version="0.1.0"; sha256="0gqh51rpmqg359pv3lqg221rw9xixvgksv1yldp6sdvy0zxpp8dx"; depends=[shiny]; }; bsam = derive2 { name="bsam"; version="1.1.2"; sha256="1m2lpqm2i4i35hzr1iylrb8skx8rsys3w542xjyqw030bs7b1rdk"; depends=[coda dplyr ggplot2 gridExtra lubridate msm mvtnorm rjags rworldxtra sp tibble]; }; - bsamGP = derive2 { name="bsamGP"; version="1.1.2"; sha256="037xgkmcli24jiqahxcingyx97q0jci2ahahcpn3xbzixa161rvf"; depends=[ggplot2 gridExtra MASS]; }; + bsamGP = derive2 { name="bsamGP"; version="1.2.1"; sha256="0b4a6ll11cykqq05ys1b0y9gdhbw6y60hjclz678vy5w8jia7a1m"; depends=[ggplot2 gridExtra MASS]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; - bshazard = derive2 { name="bshazard"; version="1.0"; sha256="151c63pyapddc4z77bgkhmd7rsa1jl47x8s2n2s8yc6alwmj6dvs"; depends=[Epi survival]; }; + bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.5.0"; sha256="1ddvkn182r48fbjqkiskb94afy942bnl953n0cghza4wkbkdfprd"; depends=[Rcpp]; }; bsplus = derive2 { name="bsplus"; version="0.1.1"; sha256="0s3407z48b7sdbkjkqcjk2j1wvs0z7chvdjzphil83l0vp3j5x0s"; depends=[glue htmltools lubridate magrittr purrr rmarkdown stringr]; }; bspmma = derive2 { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; }; - bssm = derive2 { name="bssm"; version="0.1.4"; sha256="0wrai7s5sdjykiz8c5qrlcscm1awfz9cjaggarrs83h9fcs3n38x"; depends=[BH coda diagis ggplot2 ramcmc Rcpp RcppArmadillo sitmo]; }; + bssm = derive2 { name="bssm"; version="0.1.5"; sha256="07bhngqwm2qknsk9910273wgkl1f3c564ab1p90kvyi8syc64mqg"; depends=[BH coda diagis ggplot2 ramcmc Rcpp RcppArmadillo sitmo]; }; bssn = derive2 { name="bssn"; version="0.7"; sha256="1g2xhb7bqapwd5zbc4bl4h1fskd7k6gd0rz74hnydiiwxrwiihf6"; depends=[sn]; }; bst = derive2 { name="bst"; version="0.3-14"; sha256="02rnnv3f89329kw81a1v88wjzrfjshqjijw5hp3zyydcsfa3j088"; depends=[doParallel foreach gbm rpart]; }; - bsts = derive2 { name="bsts"; version="0.7.1"; sha256="07bnhh82abagphfp6y40wchmgb10h2l5lnqc7am50arfa324blrh"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; - btb = derive2 { name="btb"; version="0.1.14"; sha256="0nk76ddsg8pjd35y2yqw27iammk948i29xmr0ha9l8b867693m44"; depends=[Rcpp sp]; }; + bsts = derive2 { name="bsts"; version="0.8.0"; sha256="06v8x2wgasbh00vvwn859y6rqp7z5ib43vvhh9qdkkrmdz4gw6sr"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; + btb = derive2 { name="btb"; version="0.1.30"; sha256="1f94zzpg3q6ldd436cv1wqpfbpw5f706073wk38a4dkg57dwrbgi"; depends=[BH Rcpp RcppArmadillo RcppParallel sf sp]; }; btergm = derive2 { name="btergm"; version="1.9.1"; sha256="1bvq6v35fpfd4vhbq1c5jb4gg3iyfflbv0n89gv4hzm80xx50rs9"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm statnet statnet_common texreg xergm_common]; }; btf = derive2 { name="btf"; version="1.2"; sha256="110p7rk43g48yrnr6c9xkyzsh3kqdywsvi23dav89hl7sxahrf75"; depends=[coda Matrix Rcpp RcppEigen]; }; bucky = derive2 { name="bucky"; version="1.0.4"; sha256="1irzv1ib40h0ijlpawp0lac572nik3x77xcdi1vyncvinc9pcmr8"; depends=[lmtest sandwich]; }; @@ -4830,23 +4863,25 @@ in with self; { bullwhipgame = derive2 { name="bullwhipgame"; version="0.1.0"; sha256="03nwf2v4zhgkxvkghpkbkxz0cnkqcwwl51ykrk25qciakfqkgfws"; depends=[shiny]; }; bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; - bupaR = derive2 { name="bupaR"; version="0.4.0"; sha256="197ibs7jmbn823skg18zm1kqr2p35bxrd6bw22vjlj6b10r4nqhi"; depends=[data_table dplyr eventdataR forcats glue magrittr miniUI purrr rlang shiny tidyr]; }; + bupaR = derive2 { name="bupaR"; version="0.4.1"; sha256="0gf9qzk826zq15w8fl9skg1kpmz0s87k5l1rs45ggdwg49q5pq48"; depends=[data_table dplyr eventdataR forcats glue magrittr miniUI purrr rlang shiny tidyr]; }; burnr = derive2 { name="burnr"; version="0.2.2"; sha256="1b5ys0jm2dmiz1jd5f3907dhv44wh60kmfdfhj3fzx8rk7zllm06"; depends=[ggplot2 MASS plyr reshape2]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; + bustt = derive2 { name="bustt"; version="0.1.0"; sha256="16y1si8bk7ar6h82bb8l3xq8k2azlxdz4aa56kh33nrajvbfc1fg"; depends=[dplyr lubridate rlang tibble tidyr]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; bvpSolve = derive2 { name="bvpSolve"; version="1.3.3"; sha256="1q5sh3kj1c07zq7mx8sh4ggp1fvwh86394qrc3ildj4wrbakmzib"; depends=[deSolve rootSolve]; }; + bw = derive2 { name="bw"; version="1.0.0"; sha256="169mqd0vj0ia0zrfnv3g5gm9vzpj5mrxrwhfv5kh5a720inlcwj1"; depends=[ggplot2 gridExtra Rcpp reshape2 survey]; }; bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; }; c060 = derive2 { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; c212 = derive2 { name="c212"; version="0.93"; sha256="10gwkr2w05bi27zwvspm3g31a1dpqbh1i52vyrfaamqkxypa11nh"; depends=[coda]; }; c2c = derive2 { name="c2c"; version="0.1.0"; sha256="149np512wjnlr9glmqxpiamf6c31v0bh6ym95jpdhk0iw3ic9kvh"; depends=[]; }; + c3 = derive2 { name="c3"; version="0.2.0"; sha256="1af4lrgck1bff8jjp9vwyw2rpq54d1ng13rpcqlf58asdja29s9h"; depends=[data_table dplyr htmlwidgets jsonlite lazyeval viridis]; }; c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; - cAIC4 = derive2 { name="cAIC4"; version="0.3"; sha256="1y12y2hk5fjhqfjbrkxl62nk0y0n1x5dh3zmiw7hqbka6i2bzsy7"; depends=[lme4 Matrix]; }; + cAIC4 = derive2 { name="cAIC4"; version="0.4"; sha256="1lv2nawrjmb89nvp308irmbnagzjxp78l6csmql6nkwcbyhwf9rh"; depends=[lme4 Matrix]; }; cIRT = derive2 { name="cIRT"; version="1.2.1"; sha256="1i43pqlyzykyd1a6abg1yi7ai9ay7d2jkvnw1sa4c6q07jk56d89"; depends=[Rcpp RcppArmadillo]; }; cOde = derive2 { name="cOde"; version="0.3"; sha256="1r49q7qansn86wrxbhxqnn1dccd9av4lh4h5pn9kk42pls9q60nf"; depends=[Rcpp RcppArmadillo]; }; cRegulome = derive2 { name="cRegulome"; version="0.1.1"; sha256="0rhi4f1wkl03vh9m6hsba08cfvqjfn99xyxsykv625bgxra817bd"; depends=[AnnotationDbi clusterProfiler DBI dplyr ggplot2 ggridges httr magrittr org_Hs_eg_db purrr R_utils reshape2 RSQLite tidyr UpSetR VennDiagram]; }; - cSFM = derive2 { name="cSFM"; version="1.1"; sha256="1znxsqa8xdifmryg7jiqbpzm837n4n862kg5x1aki52crc4zyk3k"; depends=[MASS mgcv mnormt moments sn]; }; ca = derive2 { name="ca"; version="0.70"; sha256="0730c7nk49hz0k1i5nnhq2j3wbhrlhr1qvb50mk8vmqkbhb1pz1l"; depends=[]; }; caRamel = derive2 { name="caRamel"; version="1.0"; sha256="0al4yk77a4bh8rjdpl841bnnjvs0sjyxqswqwik1n6y0bfr8f7pl"; depends=[geometry]; }; caRpools = derive2 { name="caRpools"; version="0.83"; sha256="10m7fw1zfr9i6v2qg235diwf3fmfr88incxnqpvnhmqcn082mxrp"; depends=[biomaRt DESeq2 rmarkdown scatterplot3d seqinr sm VennDiagram xlsx]; }; @@ -4855,14 +4890,13 @@ in with self; { cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; caesar = derive2 { name="caesar"; version="0.1.0"; sha256="1l0z64fsifx37j2h61kzygbwr3z3cncn48znrpb5cq10ma42igqf"; depends=[binhf]; }; caffsim = derive2 { name="caffsim"; version="0.2.2"; sha256="00bkgmmqrydpji2pvhcchgl2p8w5ksby4g80i3h76q0bm2325w9h"; depends=[dplyr ggplot2 markdown mgcv shiny tibble tidyr]; }; - cairoDevice = derive2 { name="cairoDevice"; version="2.24"; sha256="1xbjxz1cxnwzvb6hjns2kk97krmx24chpyvjaa25xwmvy4x6qcps"; depends=[]; }; + cairoDevice = derive2 { name="cairoDevice"; version="2.25"; sha256="0qsg6niz6b67yiqp200mi894s615y2bp0vb2sc093l9x9bc2jvfj"; depends=[]; }; calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; }; calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; }; calibrate = derive2 { name="calibrate"; version="1.7.2"; sha256="010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"; depends=[MASS]; }; calibrator = derive2 { name="calibrator"; version="1.2-6"; sha256="1arprrqmczbhc1gl85fh37cwpcky8vvqdh6zfza3hy21pn21i4kh"; depends=[cubature emulator]; }; - callr = derive2 { name="callr"; version="2.0.3"; sha256="1k3mflgn10hcvy74y4pbigpv74zb66fz1phfd3c8isqmn88xbxzi"; depends=[assertthat crayon debugme R6 testthat]; }; + callr = derive2 { name="callr"; version="2.0.4"; sha256="1053qqq632z94pqq2v5dynjpgyv1b1c8zvidmcllw7zn8zha8gqf"; depends=[processx R6]; }; calmate = derive2 { name="calmate"; version="0.12.1"; sha256="07sjbq7bcrhal52pdzsb5pfmk6a8a44wg8xn79sv4y5v74c5xaqz"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; - camel = derive2 { name="camel"; version="0.2.0"; sha256="0krilird8j69zbll96k46pcys4gfkcnkisww138wslwbicl52334"; depends=[igraph lattice MASS Matrix]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; camtrapR = derive2 { name="camtrapR"; version="0.99.9"; sha256="1kzy90mwmpn2yb47xp5b8s3lj8lbkg8hfw44pwfb54gqf7wi2lkm"; depends=[overlap rgdal ritis secr sp taxize]; }; cancensus = derive2 { name="cancensus"; version="0.1.7"; sha256="0v3wbmdqg36zn30kgj5xbndz69x3vvr0i6ag57gz8sbbgc4nyqbr"; depends=[digest dplyr httr jsonlite rlang]; }; @@ -4883,17 +4917,18 @@ in with self; { carData = derive2 { name="carData"; version="3.0-1"; sha256="193pdwgw6gk19v7swk1kwphg3vqdmpsgi555g9nyz93sa39j7r8j"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; - cardidates = derive2 { name="cardidates"; version="0.4.7"; sha256="0dxb2941w56s479laf315hqh9iv3k2l1ds7k8hdl9akcacagjgs2"; depends=[boot lattice pastecs]; }; + cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; }; cardioModel = derive2 { name="cardioModel"; version="1.4"; sha256="1a2nvn4a4zc89pb01m20pxqgbj0ypzzvx9w2vfzwly1kzkhvc9hr"; depends=[lubridate nlme]; }; care = derive2 { name="care"; version="1.1.10"; sha256="00h36by40v60mqzbf615a99sdfz0i42i57wybxrcm7y1y2la0da8"; depends=[corpcor]; }; - caret = derive2 { name="caret"; version="6.0-79"; sha256="1i6sjw279g6mj83vz5gv99x0nljcbpy7v0nbl72lmd80sf7rjshl"; depends=[foreach ggplot2 lattice ModelMetrics nlme plyr recipes reshape2 withr]; }; + careless = derive2 { name="careless"; version="1.1.3"; sha256="07yq6sfp110pkd3khfn8ajdqz2r4ipcs90mpaiynh12xl0n67x7k"; depends=[psych]; }; + caret = derive2 { name="caret"; version="6.0-80"; sha256="0xhdhazzfh0hiqv2hgxglj9ffd2p4ls8acqn2sjn0ndx6158f187"; depends=[foreach ggplot2 lattice ModelMetrics nlme plyr recipes reshape2 withr]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.0"; sha256="0v9gyp81abrbm8b79ch927iqh0v84q5222bvg1wx8n65vx59sx42"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; carfima = derive2 { name="carfima"; version="1.0.0"; sha256="0bxk254q916w5h5zyyp2bs6nvbmbzqfx3jr4a80fkgbmr49chzzp"; depends=[DEoptim invgamma MASS numDeriv truncnorm]; }; caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.1"; sha256="1f6g85qgd53wzha8kfq8x29lb5wilgxm6bj49znzd1qj03nlnpna"; depends=[dplyr lazyeval magrittr pander tidyr]; }; - cartogram = derive2 { name="cartogram"; version="0.0.2"; sha256="055aq2fmbx6ypyqsj427l37px8fld4b9bmc2kcmsi6fmnncb5pxa"; depends=[rgeos sp]; }; - cartography = derive2 { name="cartography"; version="2.0.2"; sha256="0wnm9hffqa751q8savfrwrnzlwdzg3rs648h17rxa0a1wqq93lzc"; depends=[classInt raster Rcpp rgeos rosm sf sp]; }; + cartogram = derive2 { name="cartogram"; version="0.1.0"; sha256="01ixcn6fy38r6nazch9dqlg19znssrx4d4fahvx9z7f4clnh0k80"; depends=[packcircles rgeos sf sp]; }; + cartography = derive2 { name="cartography"; version="2.1.1"; sha256="0dd1qps1iw9cbipy1wamyb1f2ia9bcwdb1v7jaa58ac2x1y4m9gr"; depends=[classInt raster Rcpp rgeos rosm sf sp]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; caschrono = derive2 { name="caschrono"; version="2.0"; sha256="091zqin2cr9p50zmifrb52dxy10zflm7f0lr9nissy589qjdd0gk"; depends=[Hmisc zoo]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.7"; sha256="1xd7mlnknjrilxcp0w0b36aaiql6jdqgyin1823r2x8vl9r4aqns"; depends=[]; }; @@ -4901,30 +4936,31 @@ in with self; { castor = derive2 { name="castor"; version="1.3.3"; sha256="0n7d4225g28c3i4w4n9bdd8zz91kr80vvnajpn5433db71bqrrv8"; depends=[naturalsort Rcpp]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; - catR = derive2 { name="catR"; version="3.13"; sha256="1xzxgf9d33h46qxz6a8d71mi673yzdnvxcxj073z7y19hjss3pkw"; depends=[]; }; + catR = derive2 { name="catR"; version="3.15"; sha256="1c258x8s1j4z0p1kdg7kr4ligir8q2xdcxmk2cqshxfi0p0irajz"; depends=[]; }; catSurv = derive2 { name="catSurv"; version="1.0.3"; sha256="1qjmjdmc81inim5kpwh4k2r3cffmkyp2wpcqqzv731hciqrad8a8"; depends=[BH ltm Rcpp RcppArmadillo RcppGSL RcppParallel]; }; - catcont = derive2 { name="catcont"; version="0.3.0"; sha256="1gz7bh3xi7x7clbwa7qvy64nqx5g6dfkyxysick2razr47dac0y1"; depends=[]; }; + catch = derive2 { name="catch"; version="1.0"; sha256="16gdjrmlsnpyc38fihggj6c7wpgpmf4phcwrimnncdhwlk038yn8"; depends=[MASS Matrix tensr]; }; + catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; }; catdap = derive2 { name="catdap"; version="1.3.4"; sha256="0i877l61f6c75pczi235rzci67w29zv1d7z5zn5p5ymndclvlpl2"; depends=[]; }; catdata = derive2 { name="catdata"; version="1.2.1"; sha256="0fjylb55iw8w9sd3hbg895pzasliy68wcq95mgrh7af116ss637w"; depends=[MASS]; }; cate = derive2 { name="cate"; version="1.0.4"; sha256="0qck6675xm5xbw440m1b6n38wjwk7izx3s0zpxbmhc9wh12c5prk"; depends=[corpcor esaBcv leapp MASS ruv sva]; }; - catenary = derive2 { name="catenary"; version="1.1.1"; sha256="0gd46zvd51xvra0d7k7qdcmfl71vcfk750lcafkhmr4cg0vkqcz7"; depends=[boot ggplot2]; }; - cati = derive2 { name="cati"; version="0.99.1"; sha256="0sg6qagv1wiygylgygjfn7v4n99ifaaa34qvaspmm9b4fyfcxqa5"; depends=[ade4 ape e1071 FD geometry hypervolume mice nlme rasterVis vegan]; }; + catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; }; + cati = derive2 { name="cati"; version="0.99.2"; sha256="1h8x73sfjdz45zpcrv80nq8l9i1gldw0vmdgn2lhqrjaxz4zn01l"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; catlearn = derive2 { name="catlearn"; version="0.5"; sha256="12sl1jlnn8669via3fbslbqs3f34andwsizkllpiw0b6k9z2yid6"; depends=[doParallel foreach Rcpp]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catnet = derive2 { name="catnet"; version="1.15.3"; sha256="1dgqrn1lz57pwb5pca0mlvcmw9piy9xgf6fs0y2lsy4qxa9k0plk"; depends=[]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; - cattonum = derive2 { name="cattonum"; version="0.0.1"; sha256="04vayxycv9w5ssw69gifb1y15jkz294wia5s386wyz3bz0sf3fn6"; depends=[rlang tidyselect]; }; + cattonum = derive2 { name="cattonum"; version="0.0.2"; sha256="0flsfyiymg8p1wik6yldas0ai1bq973rhhh4s3dblf1il4fdl4bv"; depends=[dplyr tidyselect]; }; causalMGM = derive2 { name="causalMGM"; version="0.1.1"; sha256="13qx71rfc6m7mvlpwma7ks09f3mlxknxw3jlv3b4iq5pjs8f1v5r"; depends=[rJava]; }; causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; - causaleffect = derive2 { name="causaleffect"; version="1.3.7"; sha256="0j7k1g2s6akwbqrijbfkxsad94knjj5mz5lkwwwfr1bpxs719916"; depends=[ggm igraph XML]; }; - causalsens = derive2 { name="causalsens"; version="0.1.1"; sha256="1z92ckqa07ajm451wrldxx9y43nawlvj2bsz0afxc9mrhjwjg5dh"; depends=[]; }; + causaleffect = derive2 { name="causaleffect"; version="1.3.8"; sha256="1z7dnfq469wa263xcxfixrn5q4vcd6xl62lahnc5gc8wzvxnxz8g"; depends=[ggm igraph XML]; }; + causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; causalweight = derive2 { name="causalweight"; version="0.1.0"; sha256="1hig92w18vsyfpv1kvgymk37ik7rw7ql80p886b3s6vwdz8z0r3j"; depends=[mvtnorm np]; }; cba = derive2 { name="cba"; version="0.2-19"; sha256="0nyssc7j5rkv1gcgx4cg31hwc37wd5k3yn9s2k22ffxlnrknss2l"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; }; - cbinom = derive2 { name="cbinom"; version="0.0.0"; sha256="1bg4jq67wr4hd6bxf5477wcmns3r956sgw2lm9gw1d4znvz5x3vf"; depends=[Rcpp]; }; + cbinom = derive2 { name="cbinom"; version="1.3"; sha256="0d9rsvs0zmm37pf1v9vbkkghi0pjlavzi5ar2cvsjapg9x4zg6wl"; depends=[Rcpp]; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; - cbsodataR = derive2 { name="cbsodataR"; version="0.2.5"; sha256="1dc4hbida1fbxin22paa31c0f4xj1pqzcc4649p7lbygqvf1fhqh"; depends=[httr jsonlite whisker yaml]; }; + cbsodataR = derive2 { name="cbsodataR"; version="0.3"; sha256="1vb6678ki391w0iskggg2xkzbcvvvvpf4vnan5ymk1v7m0i3g3b9"; depends=[httr jsonlite whisker]; }; ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; ccRemover = derive2 { name="ccRemover"; version="1.0.4"; sha256="1npd0vx2hyg7qbwd650987i49v5cxr6i1hlj5rw6fxc0b808s596"; depends=[]; }; ccaPP = derive2 { name="ccaPP"; version="0.3.2"; sha256="166spwqsqbp42mr1acglydlxspcpn8vhnim8r3s9m81sa9pmazpj"; depends=[pcaPP Rcpp RcppArmadillo robustbase]; }; @@ -4933,19 +4969,19 @@ in with self; { cccp = derive2 { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; }; cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; }; ccda = derive2 { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; }; - ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.4"; sha256="192pfsk6yw26b6f23qgkxslsfwpav8zv6js46i61vj2wa10f4mf2"; depends=[Rcpp sparsebnUtils]; }; + ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.5"; sha256="171k70p4qyasr385ma3cvcga2b4nbz2dfry78wqx5yb1aa6wwcyc"; depends=[Rcpp sparsebnUtils]; }; ccfa = derive2 { name="ccfa"; version="1.0.0"; sha256="0hhrcckiig1qfj7qb04jdmm7bwk9a17y6fn7ldxbmmw8546ad7md"; depends=[BMisc formula_tools ggplot2 pbapply quantreg TempleMetrics tidyr]; }; ccgarch = derive2 { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; }; cchs = derive2 { name="cchs"; version="0.4.0"; sha256="1dahiyn3rj65w56hmhqdxvxh7vkjy5rxlkp1l59aq5iba21ldsyj"; depends=[survival]; }; cclust = derive2 { name="cclust"; version="0.6-21"; sha256="1n5hh0017bcq8ck52qq89jm9zgdfpmiksrypsnv2vvhk3nr0s91c"; depends=[]; }; ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; }; cctools = derive2 { name="cctools"; version="0.1.1"; sha256="1baqijxg75wr90y38d5g1gg8jmpz8ji7zv51wp9n1knif27rg348"; depends=[qrng Rcpp RcppArmadillo]; }; - cdata = derive2 { name="cdata"; version="0.7.0"; sha256="1s35wibqs2bklyi8y4j2jxfj7b5jjap2rib3pmh92da3n5jx049l"; depends=[wrapr]; }; + cdata = derive2 { name="cdata"; version="0.7.1"; sha256="0hijmhpcz5r4sg8r4fn5h5lzklfwyzjh3dr25bwjc82jdcysjplg"; depends=[wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; cdcfluview = derive2 { name="cdcfluview"; version="0.7.0"; sha256="00yc3q28y20l2ppqxy6h53p9fvwhvpkc8m7csmp2lizqh787i2cc"; depends=[dplyr httr jsonlite MMWRweek purrr readr sf units xml2]; }; cdcsis = derive2 { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; }; cdfquantreg = derive2 { name="cdfquantreg"; version="1.2.0"; sha256="1z9a2rivi1i56369hkz94azfhyqch8wph819lgrxlrr4mcpl6k2p"; depends=[Formula MASS pracma]; }; - cdlTools = derive2 { name="cdlTools"; version="0.13"; sha256="0zcw7k936mxk7ysjaqj9z3lw3vycbcnp6jhwqqysvd8n62nph24n"; depends=[httr raster]; }; + cdlTools = derive2 { name="cdlTools"; version="0.14"; sha256="0zf00y8qcklz2yp7vx6mjvx2h2p4kq44r51z4qy88kq9v62rqz3k"; depends=[httr raster]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; cdparcoord = derive2 { name="cdparcoord"; version="1.0.0"; sha256="0a08rpc7chqbix10jimjh46dy6val97mrzqk972pq446b6ci95sn"; depends=[data_table freqparcoord magrittr partools plotly]; }; cds = derive2 { name="cds"; version="1.0.3"; sha256="1h34k96h7ajkaqsw4dlqri63hrbnshaqwrdl74wlgycdlbvrqj05"; depends=[clue colorspace copula limSolve MASS]; }; @@ -4954,7 +4990,7 @@ in with self; { ceg = derive2 { name="ceg"; version="0.1.0"; sha256="01la7kv0a3inc9vy5x010ysicfiv404bqfgs8csvqixviap9rd74"; depends=[graph Rgraphviz]; }; celestial = derive2 { name="celestial"; version="1.4.1"; sha256="0cvfka5lj0sj9cd7xs68szhckzfm6cgxwxim1nd530s6gxh0l7kz"; depends=[NISTunits pracma RANN]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; }; - cellWise = derive2 { name="cellWise"; version="2.0.8"; sha256="1xahayqlpylysdiqggzqh7z75r3ldi79bx124ky84r1vab659lm7"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 scales]; }; + cellWise = derive2 { name="cellWise"; version="2.0.10"; sha256="0cf6yri24ijlph3m7gkgcjdna87z2kz748ffgh35ai8lvwxkrg8w"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 scales]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; cem = derive2 { name="cem"; version="1.1.19"; sha256="17i6jp6czjgchg16zndnh828hs8v28x25gy5f8mkzfhc5pfjd8mq"; depends=[combinat lattice MatchIt nlme randomForest]; }; cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; @@ -4964,25 +5000,26 @@ in with self; { censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; census = derive2 { name="census"; version="0.2.0"; sha256="02qlmifppnfxw7bzh0zngih8z8qz0sxpsi38h7bv324vxx94gvz2"; depends=[ggmap RCurl]; }; censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; - censusapi = derive2 { name="censusapi"; version="0.2.1"; sha256="1ax1lwnw9978iss8j1hpmbnp8pbsz8rppz37cyfn0m7xnpg9mq8b"; depends=[httr jsonlite]; }; + censusapi = derive2 { name="censusapi"; version="0.3.0"; sha256="1i3z54ikg6nlxdq3hrb0a58v92lri096jxmkqqdg70rv089wspmf"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; }; centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; }; + centralplot = derive2 { name="centralplot"; version="0.1.0"; sha256="1slzvbm1vvgj1gkcx9pb46fz8q55vfyqrxsvx4qzi5kp7d9h4dy2"; depends=[ggplot2]; }; cents = derive2 { name="cents"; version="0.1-41"; sha256="03ycbd0c8b7danbblaixg6sm7msr9ixkanqswczqa8n2frhjfgj0"; depends=[]; }; cepR = derive2 { name="cepR"; version="0.1.0"; sha256="1yqny6vgsjbrfxlk965pyk38n87ylf4513kbaljmgggrlyaz0qap"; depends=[dplyr httr magrittr purrr tibble]; }; cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; }; cepreader = derive2 { name="cepreader"; version="1.1-2"; sha256="0pyycacsnbqz7hyrvrwwmmphrhny0byyxv66fwrvcsk3s88a7crf"; depends=[]; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; cetcolor = derive2 { name="cetcolor"; version="0.1.0"; sha256="013ghlfs27a585851cir5fxgxhi41h48irq90932y55npa8gwdak"; depends=[]; }; + ceterisParibus = derive2 { name="ceterisParibus"; version="0.2.1"; sha256="0qjdp4mi1s5j6rzp1z858qv8pxsbh9imykpnh6lmg7diawqpll8h"; depends=[DALEX ggplot2 gower knitr]; }; cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.7.6"; sha256="00n3h2vf855anxh0xgsps7sv0kj819864wjdmkiak1lsacysav8s"; depends=[data_table doParallel foreach raster rgdal spatial_tools]; }; + cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; }; cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; - cgam = derive2 { name="cgam"; version="1.10"; sha256="19q90bg32vn7f7znd93a7fz1pjmw1nmfxf4y5y2wfd14qmpwfk36"; depends=[coneproj Matrix svDialogs]; }; + cgam = derive2 { name="cgam"; version="1.11"; sha256="02iw1ljqqw3h57jkjd6f071lzny225ixkw1v0zmrg0wknrizbm7g"; depends=[coneproj lme4 Matrix svDialogs]; }; cgdsr = derive2 { name="cgdsr"; version="1.2.10"; sha256="1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23"; depends=[R_methodsS3 R_oo]; }; - cggd = derive2 { name="cggd"; version="0.8"; sha256="06z0mrxxc02parn9vkjv89qq4yqmsccsy319fi6c5iarssyvin1r"; depends=[]; }; cgh = derive2 { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; }; - cghFLasso = derive2 { name="cghFLasso"; version="0.2-1"; sha256="0b1hnjf9g0v47hbz0dy9m6jhcl1ky20yyhhmm8myng2sndcpjsbf"; depends=[]; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; }; cgmanalysis = derive2 { name="cgmanalysis"; version="1.3"; sha256="0fb93czybl9rpndvz3lykfiwksa154vdrmils8c8l688c62gyq55"; depends=[gdata pracma zoo]; }; chandwich = derive2 { name="chandwich"; version="1.0.0"; sha256="05x9mg33yl4d9kh5sc4lqi00hwnxdhfg2m0dkm5q0jynkhap7bmz"; depends=[numDeriv]; }; @@ -4990,36 +5027,38 @@ in with self; { changepoint_np = derive2 { name="changepoint.np"; version="0.0.2"; sha256="03i4l59h8cr6bizbqn288x9r85kvaz1dyhkv5fsj1189qpdi9m88"; depends=[changepoint zoo]; }; changepointsHD = derive2 { name="changepointsHD"; version="0.3.0"; sha256="05zmypz2jz55m9avzg63dmp7fpcgi7jpc9vf2fv0kywcvf2wz5ym"; depends=[Rcpp RcppArmadillo]; }; changepointsVar = derive2 { name="changepointsVar"; version="0.1.0"; sha256="0kj9m9jik1dm5fx4c4hb559f5irpl1mvxk4wwajd5577a2fdqxb5"; depends=[lars MASS]; }; - charlatan = derive2 { name="charlatan"; version="0.1.0"; sha256="1q5ybipi6b0lzpis53rxsfa0mlkp3c9zmcw5fwq5h93vlrdf6986"; depends=[R6 tibble whisker]; }; + charlatan = derive2 { name="charlatan"; version="0.2.0"; sha256="1j8lrkh2s7d3jpc07k3rranf8l5rsp1sp9y42fi1rhfkakwssfqd"; depends=[R6 tibble whisker]; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; - chebpol = derive2 { name="chebpol"; version="1.3-1789"; sha256="1505zdzvc9drw7n8qw5jmqligjgp5gwwki4wlk8dsm0p3p06dvd2"; depends=[]; }; + chebpol = derive2 { name="chebpol"; version="1.5"; sha256="1fsxvay91yqbhxcxchd6pf9x8jpjm9qp2rvc79wq5l5g4ng617pj"; depends=[]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; checkmate = derive2 { name="checkmate"; version="1.8.5"; sha256="1q6igk50lq4fp5d3imgcn1j063h3gsp214ra4nlf534hf4wjlkg9"; depends=[backports]; }; checkpoint = derive2 { name="checkpoint"; version="0.4.3"; sha256="0r7v7ijyq92yd95ssxxbdlp5dv1sd09yvxr8c0yihf48kzw65s63"; depends=[]; }; - checkr = derive2 { name="checkr"; version="0.2.0"; sha256="1fy00mxdjfyw37l95gy9qc0ny5v9kn16hv261c8sl1kgnp8zv4a9"; depends=[]; }; - cheddar = derive2 { name="cheddar"; version="0.1-631"; sha256="0s6v3xcpv8ppgx6q6h2hgrjcf3f3i87kmylnr9q9zhry7729aiyn"; depends=[]; }; + checkr = derive2 { name="checkr"; version="0.3.0"; sha256="168grrzl17k43fdrh9ps4hvhiyinldlmdq8bwdpj5b5cvvhh22lp"; depends=[]; }; + cheddar = derive2 { name="cheddar"; version="0.1-633"; sha256="09mw8rr5xb06gw3hbk7zv2nnx6mwhs6i19ffbp9pv3yv2945cjlf"; depends=[]; }; chemCal = derive2 { name="chemCal"; version="0.1-37"; sha256="1sbmr8arczc65nzbgr5rfk2mbbnk6h60ni9cd9jngbhgdf0g1scw"; depends=[]; }; chemmodlab = derive2 { name="chemmodlab"; version="1.0.0"; sha256="0lzibshhfz52m61xldf0xq4cc1xx64fjlw18hlkiv65dj3gcj2mh"; depends=[caret class e1071 elasticnet foreach lars MASS nnet pls pROC randomForest rpart tree]; }; chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-12"; sha256="1b74wlvjqxa532gxs400m1k4qs7xwpdap9ms60nlcwr7x1857mk6"; depends=[bitops lpSolve Matrix]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; - childhoodmortality = derive2 { name="childhoodmortality"; version="0.2.0"; sha256="1kdxb02xryc46p7q39gpvn1gwkkrr0rr398i9zxizpxaxvn0r6ql"; depends=[matrixStats plyr]; }; + childesr = derive2 { name="childesr"; version="0.1.0"; sha256="14jca7lxyn0fip794l70mznhz4ld6iix995wrmiqynxdms6j80np"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; + childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; }; childsds = derive2 { name="childsds"; version="0.6.7"; sha256="1m5w0wbdk032b6d6h1704wji84yckyl427bja0mb4vqp28m99z48"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr reshape2 tibble tidyr]; }; - chillR = derive2 { name="chillR"; version="0.70.2"; sha256="01hn2b88ra7kadjylj2y840lpkapm93kdracnamy15c6f5f27kmb"; depends=[fields httr Kendall pls raster RCurl readxl RMAWGEN sp XML]; }; - chinese_misc = derive2 { name="chinese.misc"; version="0.1.8"; sha256="0c2qhdia7wpkv4x2qnq2lyvgnr0n37brd7m579hcl6zq7dw4y2m7"; depends=[jiebaR Matrix NLP Ruchardet slam stringi tm]; }; + chillR = derive2 { name="chillR"; version="0.70.6"; sha256="0vkw9r2k8xdshwb3v90bp93mgbp3vj04c7hjxcmaxpsqkhxwda04"; depends=[fields httr jsonlite Kendall pls R_utils raster RCurl readxl RMAWGEN sp XML]; }; + chinese_misc = derive2 { name="chinese.misc"; version="0.1.9"; sha256="1rs16a5rqp0yq1c5j4yl6yji7hf9x76v6x7qmxppshjii5r8055h"; depends=[jiebaR Matrix NLP purrr Ruchardet slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; - chngpt = derive2 { name="chngpt"; version="2018.3-29"; sha256="0m1va7rknp2lmqdfhlfndhwb6ysn9vi567cc34f33829pdh0y4w3"; depends=[boot kyotil MASS survival]; }; - choiceDes = derive2 { name="choiceDes"; version="0.9-1"; sha256="07nnqqczi9p3cffdijzx14sxhqv1imdakj7y94brlr5mbf5i4fl4"; depends=[AlgDesign]; }; + chngpt = derive2 { name="chngpt"; version="2018.6-2"; sha256="043aw52kimif7wbz87hf7bg0vmd9n73pj87lvqp0ms99jmp7q2w0"; depends=[boot kyotil MASS survival]; }; + choiceDes = derive2 { name="choiceDes"; version="0.9-3"; sha256="1nsc8p4svfc6z7ckffl24c0acnaxi6cnpz7jq03vzn6spxvpjcmw"; depends=[AlgDesign]; }; cholera = derive2 { name="cholera"; version="0.4.0"; sha256="0pm5kbaqkxkwzyda4ms90yivx0iv7hcn2z65xfqcqlsxsjbvlmhs"; depends=[deldir HistData igraph KernSmooth pracma RColorBrewer scales sp]; }; choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; chopthin = derive2 { name="chopthin"; version="0.2.2"; sha256="1ixmgq6igd2ji88qba7scny1j8rrizcf76dk4ymk3hah5dln97fz"; depends=[Rcpp]; }; chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; }; - choroplethr = derive2 { name="choroplethr"; version="3.6.1"; sha256="11f529zcflbqbchnp3v5yw2vwrlhyfib5pn2j6l60x0gdfxp07bb"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps scales stringr tigris WDI]; }; + choroplethr = derive2 { name="choroplethr"; version="3.6.2"; sha256="0am163df7ggvvk8bk9hjq6f2jc55zzq24skpsgrx1qdlpgv7mls5"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps scales stringr tigris WDI]; }; choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; }; choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; - chorrrds = derive2 { name="chorrrds"; version="0.1.3"; sha256="1f4mrf5i5cddgv639cv45b35ff4r96hw7xh47zx04lgm295s5rvy"; depends=[dplyr httr jsonlite magrittr plyr stringr XML]; }; + chorrrds = derive2 { name="chorrrds"; version="0.1.4"; sha256="1mfvzj3bwipdhcdhsp66ihchnnvdbcb9zww2a19ldwr6bwx7nfic"; depends=[dplyr httr jsonlite magrittr plyr stringr XML]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; + chromoMap = derive2 { name="chromoMap"; version="0.1"; sha256="10cj9liggnbnr4isqmm8jp700z3qj4zq0dm7f7jyj7f0lg8my80y"; depends=[htmltools htmlwidgets]; }; chromoR = derive2 { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; }; chron = derive2 { name="chron"; version="2.3-52"; sha256="185lfp75cv3l4cavg64sccj8lgc5sivch13n6gkannv3pd5cyzy4"; depends=[]; }; chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; }; @@ -5029,21 +5068,21 @@ in with self; { cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; cir = derive2 { name="cir"; version="2.0.0"; sha256="0ycjnbikpyhcfdik7c5knw4s9gl8y5h4219c4fhs4axs04np004v"; depends=[]; }; circglmbayes = derive2 { name="circglmbayes"; version="1.2.3"; sha256="1a60d8jpvwx2qwmy2if60c5vni9hp73fdwgz7mwi5xd5l67zwd3h"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; }; - circlize = derive2 { name="circlize"; version="0.4.3"; sha256="0pg947gkryygikfbv6admx8gsg02b6g219j6a1sdnqij2908yxna"; depends=[colorspace GlobalOptions shape]; }; + circlize = derive2 { name="circlize"; version="0.4.4"; sha256="1l28maiqi549z191srncxgabx5fnvf0lld7smzwfd3vr5cx8nqww"; depends=[colorspace GlobalOptions shape]; }; circular = derive2 { name="circular"; version="0.4-93"; sha256="0hki85rs8wc5950pjaw28q54rly2napfbcrx3pchlfap6wwy5kkn"; depends=[boot mvtnorm]; }; cit = derive2 { name="cit"; version="2.2"; sha256="1lf8r3r4zwvs08vl4byhw6rvf54nb7vg83558pi0b5866m7in4sc"; depends=[]; }; citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; citr = derive2 { name="citr"; version="0.2.0"; sha256="1nzn0yw74k6zkwzb6spfzqkj3cbx6ry6ypbsnhy6w2flabnnvy4v"; depends=[assertthat curl miniUI RefManageR rstudioapi shiny yaml]; }; ciuupi = derive2 { name="ciuupi"; version="1.0.0"; sha256="1c72crf0his7vzmh86isvcvi0ahxnqdq4i6ms84hk20jmlz2hxin"; depends=[functional nloptr pracma statmod]; }; - civis = derive2 { name="civis"; version="1.3.0"; sha256="1897b2s23clgwh35r9nvbgd3xbznbn4yxswwwy5rwc3w8yip5brj"; depends=[DBI dbplyr devtools dplyr feather future ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; }; + civis = derive2 { name="civis"; version="1.5.0"; sha256="1cxafcnmbr97i1ygfrwn0d91hyr8irxp1g9zc9zmmaqb3kw5s0sx"; depends=[DBI dbplyr devtools dplyr feather future ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; }; cjoint = derive2 { name="cjoint"; version="2.0.6"; sha256="1bhzw751ll43qbyif589yxmi3m1pbm206lqnsc5zcxsnxjf4li5n"; depends=[ggplot2 lmtest Matrix sandwich survey]; }; ck37r = derive2 { name="ck37r"; version="1.0.0"; sha256="0nn2sfsfs8mhgjrz0ghn041ybhj2qim4rs3lkci7s4n95c8hbgdi"; depends=[caret cvAUC doParallel doSNOW foreach ggplot2 pryr randomForest RANN reader RhpcBLASctl ROCR snow stringr SuperLearner tmle]; }; ckanr = derive2 { name="ckanr"; version="0.1.0"; sha256="1cvn0cih763f0ppl1y90vnwj3cgqyb7az89sn12nyn2qb6igiqyl"; depends=[httr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; }; cladoRcpp = derive2 { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp RcppArmadillo]; }; clam = derive2 { name="clam"; version="2.3.1"; sha256="1n30fvx4macyawhzv17bzvc1s4qdn51p9mx28apfjbf80qck24g9"; depends=[]; }; - clampSeg = derive2 { name="clampSeg"; version="1.0-3"; sha256="06j0778qzw7lkdf7wrzshn9pikr57xymb3kbxvxcywz6db5c4k47"; depends=[Rcpp stepR]; }; + clampSeg = derive2 { name="clampSeg"; version="1.0-4"; sha256="0clmv53wz7shawg6mp4q3qp0z0gmd8jmd6flgzn2q1m8j2i62vq0"; depends=[Rcpp stepR]; }; clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; }; class = derive2 { name="class"; version="7.3-14"; sha256="173b8a16lh1i0zjmr784l0xr0azp9v8bgslh12hfdswbq7dpdf0q"; depends=[MASS]; }; classGraph = derive2 { name="classGraph"; version="0.7-5"; sha256="19jb9jr1gfg4karymrbilh0zjrlsczhy2q03x5b0jxnh4ykhxfj8"; depends=[graph Rgraphviz]; }; @@ -5053,8 +5092,8 @@ in with self; { classifly = derive2 { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; }; classify = derive2 { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[ggplot2 lattice plyr R2jags Rcpp reshape2]; }; classyfire = derive2 { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; }; - cld2 = derive2 { name="cld2"; version="1.1"; sha256="0zlvnnyz5aqjwzxwghfs9pyxcgr86yg3wpmrdg85dnlggjh2j12z"; depends=[Rcpp]; }; - cld3 = derive2 { name="cld3"; version="1.0"; sha256="0qka14z9w01b7xy6k97qcgd9qi6myfaw61imnf09mc8nqm0z3kya"; depends=[Rcpp]; }; + cld2 = derive2 { name="cld2"; version="1.2"; sha256="03ffg1nxdlmg66sgg0w2jdx2s5jzdp8qhja24z0il2qy3qsa915k"; depends=[Rcpp]; }; + cld3 = derive2 { name="cld3"; version="1.1"; sha256="00jbncap8h0s26iw5i0891rag5gpf1n3s9imn6n0zbwdn1791ayr"; depends=[Rcpp]; }; cleanEHR = derive2 { name="cleanEHR"; version="1.0"; sha256="0i8q7y4izc7q1pshdajy0n9wyihj4wlzzkd52ykam3dxqnwlnyh4"; depends=[data_table ggplot2 knitr pander Rcpp XML yaml]; }; cleanNLP = derive2 { name="cleanNLP"; version="2.0.3"; sha256="0hmivb2yhj47alxc9z1hlk23hfan9vz938m6xyp639xf58l97scz"; depends=[dplyr Matrix stringi]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-2"; sha256="1bhpn53v36652mwg2ba2a6cs34slb7i0df2ibssyr2lnx5gciq4i"; depends=[maptools rgeos sp]; }; @@ -5063,34 +5102,35 @@ in with self; { clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; clhs = derive2 { name="clhs"; version="0.6-0"; sha256="1vw8z4kmmpd8sbx7n8fzdd7lhg10qpnnx31nnjhv4dbd6v2nqii9"; depends=[cluster ggplot2 plyr raster reshape2 scales sp]; }; cli = derive2 { name="cli"; version="1.0.0"; sha256="07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg"; depends=[assertthat crayon]; }; - clickR = derive2 { name="clickR"; version="0.3.38"; sha256="1qlc4lz2y2ls5qx1rqiswl5qr5qqkn6l30cp5ikhzr3ffvwp3nym"; depends=[beeswarm boot brms lme4 lmerTest ReporteRs xtable]; }; + clickR = derive2 { name="clickR"; version="0.4.05"; sha256="0vi8bgvnlq09wxzc51kllngcw9dw3j2m2rh6dwa017xml2cl37j8"; depends=[beeswarm boot flextable lme4 lmerTest officer xtable]; }; clickstream = derive2 { name="clickstream"; version="1.3.0"; sha256="01bii527xy7hdph1pm6f1g4qnwa5yf3mwz01rjg1h2gc12s5vzgg"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; clifro = derive2 { name="clifro"; version="3.1-5"; sha256="1fbl5zljy60xp3klrsgs84rqw9484xmyq84n3wkrqc6pyvhskp4c"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; - climatol = derive2 { name="climatol"; version="3.0"; sha256="0wfqs8yk3m6wpm86yfhsg100d4x67bzz1871mxrs69r6ybrh30qx"; depends=[]; }; + climatol = derive2 { name="climatol"; version="3.1.1"; sha256="012spjgw20bg4rlxgwh05rhaswa4afbd35sq1isidm6i73ma0yjq"; depends=[mapdata maps]; }; climbeR = derive2 { name="climbeR"; version="0.0.1"; sha256="10i74bph7dhv2xj01qdhymlmfwj32lzxivanif11zmzmq9p5bqsw"; depends=[ggplot2]; }; climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-6"; sha256="0dyhqxrma8g4ny4afv6drr885m88q2b8g1n19yy3yjbrbddyz8yl"; depends=[caTools PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; climextRemes = derive2 { name="climextRemes"; version="0.2.0"; sha256="0cjvmd48iaid0f95354zpxlgwy79jga9lz0p82yiv0fb2mvjpbqn"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.0"; sha256="0xqgf9hmpidxq85rfm0vndh3waw0qf2yhrzmp04sqbbqhzkf9v7n"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv plyr RcppRoll reshape]; }; - clinDR = derive2 { name="clinDR"; version="1.7"; sha256="0xnrnmwg4y2vlxsmhj5pzpyiqk90xjxl91i9nn3lv90xszmdh0x2"; depends=[doParallel DoseFinding foreach ggplot2 rstan]; }; + clinDR = derive2 { name="clinDR"; version="1.8"; sha256="1vlzrxncx45xpg3jb8357dqk4pjylijr9fqj4pxwajnshrvsvqaw"; depends=[doParallel DoseFinding foreach ggplot2 rstan]; }; clinPK = derive2 { name="clinPK"; version="0.9.0"; sha256="1n1m8szd8mxdshwz8l3hfdxi7zrmsah46kxkv7jiffwnfhijfhsm"; depends=[curl testit]; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; clinfun = derive2 { name="clinfun"; version="1.0.15"; sha256="0cv1kdxj911scri82ms21lk9frsdp4251fawdsbqinby7k6hhmkc"; depends=[mvtnorm]; }; clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; - clipr = derive2 { name="clipr"; version="0.4.0"; sha256="1bz841r3kmv16r6zxmlkvasp4nyldam00n6gh7zf8lyy9ymz38j4"; depends=[]; }; + clipr = derive2 { name="clipr"; version="0.4.1"; sha256="061x84ildc7g1p91yw5iyj8lpqdf4hqv36as85lw8c6qv9ywbsqv"; depends=[]; }; + cliqueMS = derive2 { name="cliqueMS"; version="0.2.1"; sha256="19vv5v4hi10nbm069nqrw3mrindj2bpv2hlmcs8g086cm4wl8ny3"; depends=[BH CAMERA igraph Matrix qlcMatrix Rcpp RcppArmadillo xcms]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; - clogitL1 = derive2 { name="clogitL1"; version="1.4"; sha256="0m9yrg9mzzfv5qkdf6w55xyrjdghyrf27kk7b4x2gyvwvi5b7dkm"; depends=[Rcpp]; }; - clogitLasso = derive2 { name="clogitLasso"; version="1.0.1"; sha256="1mm815w31n0jvbh2rwq15ja1mzvjaz1x846xq1949aj4pb692zrl"; depends=[foreach lassoshooting]; }; + clogitLasso = derive2 { name="clogitLasso"; version="1.1"; sha256="1j2kscd6d1jham6yqx5rp78x5vfj2faylkxkbcjaqbynlnqbbxd0"; depends=[foreach lassoshooting]; }; clogitboost = derive2 { name="clogitboost"; version="1.1"; sha256="19wcb7229amlxn6xahxj6pf9rwfm02s7qkxz2yvyhnq95y0clxkm"; depends=[Rcpp]; }; clordr = derive2 { name="clordr"; version="1.3.0"; sha256="16cw6i91azi3xw9slzy2v8vpdkqik8k02mvgvcl9a3irbl7wgz10"; depends=[doParallel foreach MASS pbivnorm rootSolve ttutils]; }; cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; + cloudml = derive2 { name="cloudml"; version="0.5.1"; sha256="1h276vxb1cfqlcbj9fciysdj4wr9zvwglxfq2sh6hh08lm1w3c0z"; depends=[jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; clpAPI = derive2 { name="clpAPI"; version="1.2.7"; sha256="19bn5d7qjj7g0x17jnh2snymcn2r2skzj35hkhsgcj5r43834f3r"; depends=[]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; - clubSandwich = derive2 { name="clubSandwich"; version="0.3.1"; sha256="1ga7f2s2jrj7xhrqz86bfsby8a6gsp9fqbfv0mjb2iaybi0is8d9"; depends=[sandwich]; }; - clue = derive2 { name="clue"; version="0.3-54"; sha256="1fnl1wi0g8f243ra5krlpyz69pg8s8m2wwxa53hb086k7hqv74af"; depends=[cluster]; }; + clubSandwich = derive2 { name="clubSandwich"; version="0.3.2"; sha256="1q4kidxcarlazh9zaav6vdc7ixb3hdg3zh5kr6mwkm087gi05nw5"; depends=[sandwich]; }; + clue = derive2 { name="clue"; version="0.3-55"; sha256="0hprhzd9i5ifrmfcgddgacg404f6y1zpcpqbyqza4c5lw44am4nc"; depends=[cluster]; }; clues = derive2 { name="clues"; version="0.5.9"; sha256="0znlsbfmnz5wkp2cswrkjbgchdmmf7h78mv2zwx382m9n9n9hshy"; depends=[]; }; - clusrank = derive2 { name="clusrank"; version="0.5-2"; sha256="168xad5dyz46yxm139q09n9vp1304yrhikxz5bcfzhm3psyv5fbf"; depends=[MASS Rcpp]; }; + clusrank = derive2 { name="clusrank"; version="0.5-3"; sha256="0am8q6xc9x9g42gmn0khdizlwrz3ssrripqrw0a36apzk61i6qpp"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; }; clustEff = derive2 { name="clustEff"; version="0.1.2"; sha256="1hy7jc8yfg554l439lfrppdsizrdmvxrqf9dwbkjckbvggg54f0k"; depends=[cluster fda qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; @@ -5103,23 +5143,24 @@ in with self; { clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; clusterPower = derive2 { name="clusterPower"; version="0.6.111"; sha256="1mwq188x9d495my75cdcahfjm3w46cas9jqxks5c0j63395cw9g3"; depends=[lme4]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; }; - clusterSEs = derive2 { name="clusterSEs"; version="2.4.1"; sha256="04f30zsk96yv7c77darfqkkqw4ij4cq8r438lzlb1l063kpaclh4"; depends=[AER Formula lmtest mlogit plm sandwich]; }; + clusterSEs = derive2 { name="clusterSEs"; version="2.5"; sha256="0m7vlcjs6zmfaxi1kn68fgcvfrb1gpky2fcg8jhrwc3yxzg23m74"; depends=[AER Formula lmtest mlogit plm sandwich]; }; clusterSim = derive2 { name="clusterSim"; version="0.47-1"; sha256="0k9cn0ycz7l9g4lb434cqp9yx2ilmp25xa5hlhma9jmxlbdsbji2"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; clusteredinterference = derive2 { name="clusteredinterference"; version="1.0.0"; sha256="1dnbymivxkrhx39maannhvm8ynlgjxsiavd2d9ych5nq4mjvhnjg"; depends=[cubature Formula lme4 numDeriv rootSolve]; }; clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; - clustermq = derive2 { name="clustermq"; version="0.8.3"; sha256="1w5gklz7dw26861dqnvvm9hismn6p4wjw4hi0kf37p5hjq7cvfjh"; depends=[infuser narray purrr R6 rzmq]; }; + clusterlab = derive2 { name="clusterlab"; version="0.0.2.2"; sha256="0pls0yk5x1a48kg1vwzm60yvpmy85gflg9kf0znvkv4k4xrz5smc"; depends=[ggplot2 reshape]; }; + clustermq = derive2 { name="clustermq"; version="0.8.4.1"; sha256="0j8xaj2spqsvr1dmzz2xi8qwwwyvhw8nmrg3jy52zk20pcqw3c03"; depends=[infuser narray progress purrr R6 rzmq]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; - clustrd = derive2 { name="clustrd"; version="1.2.1"; sha256="05lsicz4br81fv20151j4j2bp1pfddcvywfqkagflc33z954a3z1"; depends=[ca cluster corpcor dplyr dummies fpc GGally ggplot2 ggrepel plyr]; }; - clustree = derive2 { name="clustree"; version="0.1.1"; sha256="0y6i4z9xzmw7jf6c9kl87zims3gs5akyl355jc539534vhmsi73a"; depends=[checkmate dplyr ggplot2 ggraph igraph rlang viridis]; }; + clustrd = derive2 { name="clustrd"; version="1.2.2"; sha256="0jcx6afns87wyrc7j2rmc57q4447caxwrkq0j7fys5jbkcidw7bh"; depends=[ca cluster corpcor dplyr dummies fpc GGally ggplot2 ggrepel plyr]; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; clustvarsel = derive2 { name="clustvarsel"; version="2.3.2"; sha256="11xd3pgr4i15q9rcim8y6ybi1iijv59k7f8wh0b2368kz3kz54cj"; depends=[BMA foreach iterators Matrix mclust]; }; clv = derive2 { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahwhcyn5pvsqzdlqj700y1k7wl7mc"; depends=[class cluster]; }; cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; + cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmna = derive2 { name="cmna"; version="1.0.0"; sha256="1x4w47j39p2f2n4jxrp4r1vw6gvpqzkgr5h158s18z26zllpvrnr"; depends=[]; }; cmpprocess = derive2 { name="cmpprocess"; version="1.0"; sha256="0gqfmbm86bfi2l81pf2dn70rxg58h1y8hiyrp8sv9v84cx20422v"; depends=[compoisson numDeriv]; }; @@ -5128,7 +5169,7 @@ in with self; { cmrutils = derive2 { name="cmrutils"; version="1.3"; sha256="0zjc0bwp2p03hmnj3zjw7800pcdw8b8161y68npyp3hya0s4i9x0"; depends=[chron]; }; cmsaf = derive2 { name="cmsaf"; version="1.9.1"; sha256="02l1g5l42lxg3wlpjg5qm6h8mfr1bdcpi052z8masxf6xf4l0abr"; depends=[fields ncdf4 raster sp]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-3"; sha256="0810kzg78yaxzniq59a4swvdk9qxp37ja52f5n1zssgn0cwz1vk9"; depends=[elliptic emulator]; }; - cna = derive2 { name="cna"; version="2.0.0"; sha256="0cfr4g63wwqkkz2xxz76m82p0am2kyazal6sqp7gnrc48x9lv8im"; depends=[Rcpp]; }; + cna = derive2 { name="cna"; version="2.1.1"; sha256="1m4920ya3nm5x5yyzpd4g0vgnk4f0lc62c2favymk03ldg6kd6c4"; depends=[matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; cnmlcd = derive2 { name="cnmlcd"; version="1.2-0"; sha256="1vpn926wf8vkifscnb35y4c74721iar2wykrl50fcv0fg16yggnd"; depends=[lsei]; }; @@ -5137,28 +5178,29 @@ in with self; { coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coalitions = derive2 { name="coalitions"; version="0.6.2"; sha256="0plzrjjsbbr5mw6wqirxp1wgpl2bw2kh0gdalr8c8v2z7hc1d9r6"; depends=[checkmate dplyr forcats gtools jsonlite lubridate magrittr purrr RCurl reshape2 rlang rvest stringr tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-3"; sha256="0f1fkpmqq142yrqzbqv11s5q4jkq7dilmrllcns871hc6vah6ikd"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="3.2.2"; sha256="1hjfhbx8pjxf87bbp41xkq03srixv5p30nw2dk1f8if7xcyzjp97"; depends=[ggplot2 ggstance]; }; + cobalt = derive2 { name="cobalt"; version="3.3.0"; sha256="12pdcdjca9lncvjpdmpss74sz4jlk33p1l6nmyk2qvwzpf2s8f1d"; depends=[crayon ggplot2 ggstance]; }; cobs = derive2 { name="cobs"; version="1.3-3"; sha256="1pqvz7czcchri4x79g78hbwyagb3bqzdqb047zkbdinyz067c7kb"; depends=[quantreg SparseM]; }; + cocktailApp = derive2 { name="cocktailApp"; version="0.1.0"; sha256="0gc75qy0k01z0r5hl07gyc3gi98fcmapwq523vldp04arn3glnb4"; depends=[dplyr DT forcats ggplot2 ggtern magrittr shiny shinythemes tibble tidyr]; }; cocor = derive2 { name="cocor"; version="1.1-3"; sha256="106zyrrypil8jyg0pva5zj4hgb53z81nca3d0mh2q3j55zq3wl12"; depends=[]; }; cocoreg = derive2 { name="cocoreg"; version="0.1.1"; sha256="0jrrkak964pl1vih592jgqgl6bw08j0fa1rh3j85x64bqq4m7278"; depends=[abind CCAGFA combinat e1071 ggplot2 glmnet gridExtra MASS multiway pls reshape RGCCA]; }; cocorresp = derive2 { name="cocorresp"; version="0.3-0"; sha256="1r1ssz0cip1gk52nkbr1kpz8gwrg6lwri8ymk41xj2adlsp576v2"; depends=[vegan]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-1"; sha256="14a4a8df4ygj05h37chmdn8kzcqs07fpbflxfrq530563mrza7yl"; depends=[lattice]; }; - coda_base = derive2 { name="coda.base"; version="0.1.8"; sha256="05bbmfswajmjc8l3g2clwj3hyj06y9v7camq910b881frl2xj584"; depends=[MASS Rcpp RcppArmadillo]; }; + coda_base = derive2 { name="coda.base"; version="0.1.9"; sha256="0m4a77l34bk0bwcsvc8654hf5pinf2p7k2223vxkrq5ldylpwqax"; depends=[MASS Rcpp RcppArmadillo]; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; - codebook = derive2 { name="codebook"; version="0.5.8"; sha256="0zz4vw5r5dw3vfd0j71jzgdf1z1ll0sgcwqq7qrnxn1s4ya4d0v4"; depends=[dplyr DT future ggplot2 haven knitr likert mice pander psych purrr readr rlang rmarkdown skimr stringr tibble tidyr]; }; - codemetar = derive2 { name="codemetar"; version="0.1.5"; sha256="164cjcqi0pz2h3v4i8llgjjif1gyrvisg0pqz04s4glbbf2pkz80"; depends=[devtools git2r jsonld jsonlite readr stringi]; }; - codep = derive2 { name="codep"; version="0.8-1"; sha256="1ip84285kcqgniabw5da7az1p508wx961gr4hiqf8c24flyw08br"; depends=[]; }; + codebook = derive2 { name="codebook"; version="0.5.9"; sha256="12hycq576klq12lqqkwjvxi2k2axl34zs78hfy78mlwlbcgm51gk"; depends=[dplyr DT future ggplot2 haven htmltools knitr labeling likert mice pander psych purrr readr rio rlang rmarkdown skimr stringr tibble tidyr]; }; + codemetar = derive2 { name="codemetar"; version="0.1.6"; sha256="1jjm1c7fkrzyhb57ckdf3d808im5j6c20ykkjsnddh220jy4sgss"; depends=[crul curl desc devtools gh git2r jsonld jsonlite memoise purrr readr sessioninfo stringi stringr tibble usethis whisker]; }; + codep = derive2 { name="codep"; version="0.9-1"; sha256="17jziwm56icswa4ngp51ah8w1ma7ij3cksbdaipk0ikqvb5kinkb"; depends=[]; }; codetools = derive2 { name="codetools"; version="0.2-15"; sha256="0h7sjmvvsi35041jp47cxhsqzgf1y8jrw6fxii7n26i8g7nrh1sf"; depends=[]; }; codingMatrices = derive2 { name="codingMatrices"; version="0.3.2"; sha256="0kldx2h3mksw4644d0ask6ij7i63rrwk0njlsvkbdjz3bf7pdv1b"; depends=[fractional Matrix]; }; - codyn = derive2 { name="codyn"; version="1.1.0"; sha256="0s8ssaq59vddilz0fin9sgr8fir70c220cffbsy2l0qn34q48627"; depends=[assertthat permute]; }; + codyn = derive2 { name="codyn"; version="2.0.0"; sha256="1h58w4hb5m8qy7i5h1r7306c5aac1j887aig0imgsjhinj48pi5l"; depends=[assertthat permute vegan]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.6"; sha256="036njf2xwmjvyamanb7nfn2n09ps2rdgk3zrxn6khwp8ly245nps"; depends=[dplyr dygraphs ggplot2 magrittr plyr purrr reshape2 tibble useful]; }; coenocliner = derive2 { name="coenocliner"; version="0.2-2"; sha256="0r4h0r3av2d1cxmjpwaabjn807626pzqnra2x542wdnnf7h8nmdf"; depends=[]; }; coenoflex = derive2 { name="coenoflex"; version="2.2-0"; sha256="06f75spl4wkbgicm0bksnid2lb1gkvi05915wn5y4km45d82fkkr"; depends=[mgcv]; }; coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; }; - cofeatureR = derive2 { name="cofeatureR"; version="1.1.0"; sha256="1yz73541zsasw4k08b94vkhhs9ilchgpi5mrn4a0cqhb52il73sz"; depends=[dplyr ggplot2 lazyeval]; }; - coga = derive2 { name="coga"; version="0.2.2"; sha256="0zbcx5g48168clvy8n4pp7pmvx0xlqfwr10fp34wf1k0j08smzx3"; depends=[Rcpp RcppGSL]; }; + cofeatureR = derive2 { name="cofeatureR"; version="1.1.1"; sha256="1awfrlnbpw9ivfvaahznx6dx5jp8ln0154vh2pznp520q59h1mbs"; depends=[dplyr ggplot2 lazyeval tibble]; }; + coga = derive2 { name="coga"; version="1.0.0"; sha256="0mx3jdjd1s855lk451zmjf6w5rpajx39q6w7aw3kng68snyalz16"; depends=[Rcpp RcppGSL]; }; coin = derive2 { name="coin"; version="1.2-2"; sha256="1fq58793bymzig1syjg2lvn6hsxfwkhh00jfrchh3c0y7rfhc66m"; depends=[modeltools multcomp mvtnorm survival]; }; coindeskr = derive2 { name="coindeskr"; version="0.1.0"; sha256="0iwkg9qx5gymzjxw3w1zlwq9336kbqp4z8a9wf9a1p2gp9727qcm"; depends=[httr jsonlite]; }; coinmarketcapr = derive2 { name="coinmarketcapr"; version="0.1"; sha256="006ndsj37rx7fg3laama9y3xc6ivhp6b67w4wf3g161ypphlhkxv"; depends=[ggplot2 jsonlite RCurl]; }; @@ -5171,11 +5213,12 @@ in with self; { collpcm = derive2 { name="collpcm"; version="1.0"; sha256="15k6khsgikjpsasyz02bhgd43nij2n7nl0m0sgxvjlcn0nv95y2n"; depends=[latentnet network vegan]; }; colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; }; coloc = derive2 { name="coloc"; version="3.1"; sha256="1321675wz1vn7rcd2sm4c9h183nwnmp0lqww5nykjf792ijyaal8"; depends=[BMA flashClust ggplot2 reshape snpStats speedglm]; }; + colocalization = derive2 { name="colocalization"; version="1.0.0"; sha256="0szdxjj5nbb3ncxsg0b7jphlqqxnizs2lymcafk42sdgvlfkx8sr"; depends=[ggplot2]; }; colorRamps = derive2 { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; colorSpec = derive2 { name="colorSpec"; version="0.7-3"; sha256="1gg55872ap3h15h5ris1qhjgyq4q55x702z9v0xsigz87fcr300s"; depends=[MASS minpack_lm]; }; - colordistance = derive2 { name="colordistance"; version="0.8.0"; sha256="0fqj8apgfvk021cs1m79nk9kx294zxbj55jqylcrg3hadxy4plkf"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png scatterplot3d spatstat]; }; + colordistance = derive2 { name="colordistance"; version="1.0.0"; sha256="1z4pa5byk1ag6pqdqi6sn5z6caak4733399gk6zp4wi4kfd9p64a"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png scatterplot3d spatstat]; }; coloredICA = derive2 { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; }; - colorednoise = derive2 { name="colorednoise"; version="0.0.2"; sha256="0y2a86fwndcgkaxr4jmls7a9d1ipij4zi3r4nchwda0bynlw6mq4"; depends=[dplyr purrr Rcpp]; }; + colorednoise = derive2 { name="colorednoise"; version="1.0.3"; sha256="1idwb4w1r7jpjvrlly8326i4d9lw6bjlmlb591hgwl5xdf4599gi"; depends=[dplyr purrr Rcpp RcppArmadillo tidyr]; }; colorfulVennPlot = derive2 { name="colorfulVennPlot"; version="2.4"; sha256="01b3c060fbnap78h9kh21v3zav547ak2crdkvraynpd2096yk51w"; depends=[]; }; colorhcplot = derive2 { name="colorhcplot"; version="1.3.1"; sha256="009pyyb30kwshldd7v7zfy5rxys6i0dhlc5w8ail61acbg4rlrmz"; depends=[]; }; colormap = derive2 { name="colormap"; version="0.1.4"; sha256="0032ji9n8pivl70jppq989fgg781wil8zag7pfl1hs9xrpin8asy"; depends=[ggplot2 stringr V8]; }; @@ -5187,40 +5230,42 @@ in with self; { colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; colourlovers = derive2 { name="colourlovers"; version="0.2.2"; sha256="0fgxs73l4g1lnmc2q613ykxxrbmvq6w66zpidccqg64wa9cy5yhm"; depends=[jsonlite png XML]; }; colourpicker = derive2 { name="colourpicker"; version="1.0"; sha256="0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; - colourvision = derive2 { name="colourvision"; version="2.0"; sha256="0gxhdyajrmnks1ivbnhxl37ivq4h3figp5kgk6g2wdn80i2b8k1a"; depends=[Matrix rgl]; }; + colourvision = derive2 { name="colourvision"; version="2.0.1"; sha256="009nssi996dakjggk64zzmfx9mjdfj04kfy7ds3c9fsb39ynz1ag"; depends=[Matrix rgl]; }; colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; }; colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; }; comato = derive2 { name="comato"; version="1.1"; sha256="0lidwr5vw10655p7q0iqzq3phq5y1i86w3bjdv87cwx3m6333bz6"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; }; combinat = derive2 { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; }; combiter = derive2 { name="combiter"; version="1.0.3"; sha256="11pcvrpbvkzkjwks2z6ww7s9d5fkh8zl0jw52a5ya3y1wkqcs3n6"; depends=[iterators itertools Rcpp]; }; - comclim = derive2 { name="comclim"; version="0.9.4"; sha256="0m6ynccscsrrq70p0drwrwxp4skc630kv1l5smh48pi8kagahj1g"; depends=[]; }; + comclim = derive2 { name="comclim"; version="0.9.5"; sha256="1s6zh16j0q2n7gkvhd4bym9w3hyg4b9n5lpgspqp2nlygdl6jxxb"; depends=[]; }; cometExactTest = derive2 { name="cometExactTest"; version="0.1.5"; sha256="0ar9axm9cd1wd937xcmsmd7xqilnfyab8gsrpkiqpc3fjh86qyrp"; depends=[dplyr]; }; comf = derive2 { name="comf"; version="0.1.7"; sha256="1waxapw870fssmy9mzzpslypbal7vanlajzv9ffnsh5w2yzjdpfi"; depends=[plyr]; }; commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; - commonmark = derive2 { name="commonmark"; version="1.4"; sha256="1vb8r9khpvcf0q7acv8rsplfjjwcll302bg5kp596cvn6aacypl6"; depends=[]; }; + commonmark = derive2 { name="commonmark"; version="1.5"; sha256="1jwx5rgm0ypd9a3v4jd9za4a644rdzhk1n4dvmgkj9hdpwsida3z"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.1"; sha256="0v9jlk75ihh8yjhq5ybighvndp0hn1d6rqh78jkh4g6ylhbpvcw0"; depends=[]; }; comorbidity = derive2 { name="comorbidity"; version="0.1.1"; sha256="0xb3k2ql3ikdbyx8l73wsrwi62ayapszbrygk8arw1g2n0yqz2f4"; depends=[checkmate]; }; compHclust = derive2 { name="compHclust"; version="1.0-3"; sha256="0agay7rn5mrw07imz4l547b7m9pfcg3rhz4krfxrvg1q2z2kryvj"; depends=[]; }; compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; - compareDF = derive2 { name="compareDF"; version="1.3.0"; sha256="0idra4qsr73sx4rcnm3d6arfz8mrcc072jiw3lljjmwidsfdnjvr"; depends=[dplyr htmlTable tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="3.3.3"; sha256="18v5as6037ndihsslk25455y553wcbrdriav1p6zbbc52lqcf0a3"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; + compareDF = derive2 { name="compareDF"; version="1.5.0"; sha256="0nn8yimmi1yqb5qf4brx7i8zps1mfh6w3gfx3xpsaigk1miik1hb"; depends=[dplyr htmlTable stringr tidyr]; }; + compareGroups = derive2 { name="compareGroups"; version="3.4.0"; sha256="057578433ms4q2xs62zbv36gwx67ihwdlxl243p10y1y7ps335kg"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparer = derive2 { name="comparer"; version="0.1.1"; sha256="1nmvqzrvyxdsidkr243qdn0lj2s7j3jv1sh0mdlxm2v5063nyryr"; depends=[progress]; }; comparison = derive2 { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; compeir = derive2 { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; }; compendiumdb = derive2 { name="compendiumdb"; version="1.0.3"; sha256="0glaqlzz5wr14yfhka1y7yw5ha6yc4waw61msbz0vkwj5z2hd2hk"; depends=[Biobase GEOquery RMySQL]; }; + comperank = derive2 { name="comperank"; version="0.1.0"; sha256="0fxg32kp4v42455fia48rnbd3v84g4vsh4r4qc29d0gg93ymz9hp"; depends=[comperes dplyr Rcpp rlang tibble]; }; + comperes = derive2 { name="comperes"; version="0.2.0"; sha256="0h531xbaidh0ld16q1q4jlx4yshyiczx464x0kkyrrr7ysg527pp"; depends=[dplyr magrittr rlang tibble tidyr]; }; compete = derive2 { name="compete"; version="0.1"; sha256="1b1320jw8pcnjkzb0lr8j6d3z7yhlq31gszd79wdcmwnpzap9k0z"; depends=[igraph sna]; }; complexity = derive2 { name="complexity"; version="1.1.1"; sha256="1lpsvry88jpqfw0wkdlwjzkqjl17f4adjcqvq0dwk483mi54xnfk"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.6.1"; sha256="1dr80r1p05h3mlnjbgh6kfw86np8y2bhy9yi5qydv85w52k133n1"; depends=[boot ggplot2 robustbase scales]; }; compoisson = derive2 { name="compoisson"; version="0.3"; sha256="0v5dl7xydqi4p97nipn4hyhpq2gghmx81ygvl0vc8b65jhq89y0p"; depends=[MASS]; }; - compositions = derive2 { name="compositions"; version="1.40-1"; sha256="1hn139g86bc1q3dj6kj9f21042v4x0xgrp4ni1zvx1zx8xmy3h8b"; depends=[bayesm energy robustbase tensorA]; }; - compound_Cox = derive2 { name="compound.Cox"; version="3.10"; sha256="0xk7r7dvcm5kwvimap9v4h60nxrk6hk72hm7258pm0x32ygwidcw"; depends=[numDeriv survival]; }; + compositions = derive2 { name="compositions"; version="1.40-2"; sha256="12mp05yi7jkdqg9iwh6bc9sx6sdxagcnrirznxy9hq8502p7238i"; depends=[bayesm energy robustbase tensorA]; }; + compound_Cox = derive2 { name="compound.Cox"; version="3.12"; sha256="143a0vgv86n1pz6442r7nk7hh04brz1x3na8msnm9njxf0qqjwpm"; depends=[numDeriv survival]; }; compute_es = derive2 { name="compute.es"; version="0.2-4"; sha256="1b5i8z66zbag0vdv98mmpwmizpm68vc3ajh0n3q94zdcmhcbx12d"; depends=[]; }; - comtradr = derive2 { name="comtradr"; version="0.1.0"; sha256="0az61xsrwzr4g1s6g52vm9fivh985c6s06y3rb1c9ic0my385zhx"; depends=[httr jsonlite magrittr purrr]; }; + comtradr = derive2 { name="comtradr"; version="0.2.1"; sha256="0l14qwvnzll98jp235ip6skmr3fdr1y5niqjwhz9nyk8spfbyvp1"; depends=[httr jsonlite magrittr purrr]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concaveman = derive2 { name="concaveman"; version="1.0.0"; sha256="0b6a37h4k3p879gp4qp3297q0fzq3yn79yhkwjrcxhcl86sg5nb6"; depends=[dplyr jsonlite magrittr sf V8]; }; conclust = derive2 { name="conclust"; version="1.1"; sha256="1k9y1mniy7s51dmm5ia693k72s2vxk5bznxxf74s7mx9n3mg2i8r"; depends=[]; }; @@ -5238,16 +5283,17 @@ in with self; { condusco = derive2 { name="condusco"; version="0.1.0"; sha256="0zydinzlksynkz4r712rzv9qqdx8dkdz3h1ygi9cfmd6hya3580s"; depends=[assertthat bigrquery DBI jsonlite]; }; condvis = derive2 { name="condvis"; version="0.4-2"; sha256="0l515wpsmh7g4q4w29gb1gv5kafwzfhb8as0ml8vbbrh6xcgmz9q"; depends=[MASS]; }; coneproj = derive2 { name="coneproj"; version="1.14"; sha256="0km7njsxjgrv4d8bx709nci59ngm00jg1r55702yapyjl0f2zg93"; depends=[Rcpp RcppArmadillo]; }; - conf = derive2 { name="conf"; version="1.0"; sha256="0skfmk1vz8ry52l811rxnk6a8hicajza8m5ycfg7p0xb8ssyj6gi"; depends=[]; }; + conf = derive2 { name="conf"; version="1.2"; sha256="1xk3b94k73msj2mykxr0b9q472biz40qnckkym82b4vqmga1c0rs"; depends=[SDMTools STAR statmod]; }; conf_design = derive2 { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; confSAM = derive2 { name="confSAM"; version="0.2"; sha256="1l67ndya07hh0yqfbabfhsvp3hryklx0022grpr0cb7ff88d1zam"; depends=[]; }; confidence = derive2 { name="confidence"; version="1.1-2"; sha256="0m6iz59n5jpi0ig3za3nir4d4bdsysf5g47d2nakfmaz03wk520z"; depends=[ggplot2 knitr markdown plyr xtable]; }; config = derive2 { name="config"; version="0.3"; sha256="0l67nfpm42ssnk0bl4jmq6bibz8hawgfgh2s14s5c8mnimv6mpjs"; depends=[yaml]; }; - configr = derive2 { name="configr"; version="0.3.2.1"; sha256="184iafdsj0k8i4n877g00fsnqmdq7k4y1azwn4d18gq2l7kg3qn1"; depends=[glue ini jsonlite RcppTOML stringr yaml]; }; + configr = derive2 { name="configr"; version="0.3.3"; sha256="08fa04sjh2k6mbv998bp6cd7rh47j0ic3bcqdhr7zqlbd1g670x2"; depends=[glue ini jsonlite RcppTOML stringr yaml]; }; confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; }; + conflicted = derive2 { name="conflicted"; version="0.1.0"; sha256="0dai0dvb3sbnjspg5wdwm4j5d11xkmrvpjjxpzb7s70d8wp4c72h"; depends=[rlang]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; confreq = derive2 { name="confreq"; version="1.5.1"; sha256="0gy6d1kffb1w86ifldswb9krxyc2p646g9yjlfm1h243qlp52sfa"; depends=[gmp]; }; - congressbr = derive2 { name="congressbr"; version="0.1.1"; sha256="1kfpyrakbri9zqggcfy7flxyfpf85w5gqxi0p249qjw5khz8nkz5"; depends=[dplyr httr lubridate magrittr pscl purrr stringi stringr tibble tidyr xml2]; }; + congressbr = derive2 { name="congressbr"; version="0.1.3"; sha256="1c29nqnhiyr9y2hs5lwpqa7c54qcqfr74l5mzh13dlccz3zsm2p1"; depends=[dplyr httr lubridate magrittr pscl purrr stringi stringr tibble tidyr xml2]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.39"; sha256="0f8fwf419js9c292i3ac89rlrwxs2idhwxml1qd8xd2ggwfh6w5m"; depends=[AlgDesign clusterSim]; }; @@ -5255,7 +5301,8 @@ in with self; { constants = derive2 { name="constants"; version="0.0.2"; sha256="1j9d52riwx7v1ppfdw0x517j7xh92qgskd4mj5yk9qa233brcwyy"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; }; - contfrac = derive2 { name="contfrac"; version="1.1-11"; sha256="0vmcazjlg0p3xaksai3k7yb9bbqkd4lhmbvxf2qymr2asqm51mdi"; depends=[]; }; + container = derive2 { name="container"; version="0.2.1"; sha256="0vy77hhxmrai71y3ivs69ijdsk50lgrayij2mbvb0415kxv9ifs9"; depends=[R6]; }; + contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; conting = derive2 { name="conting"; version="1.6.1"; sha256="0vw6gwiajxzaai6ky0b89l2jg4kd4c6xxzb1cmzxlcdrhwmhz402"; depends=[BMS coda gtools mvtnorm tseries]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.21"; sha256="1fgm6qm3svqg8ryq2kd1h9z6f3ni8kki7gl3izvjw6wir97ph8nw"; depends=[geepack Hmisc MASS nlme rms sandwich]; }; @@ -5264,14 +5311,15 @@ in with self; { convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; }; convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; convevol = derive2 { name="convevol"; version="1.1"; sha256="1d9h2vjzfmnbm4aprbvhndgjh85zp3j1hssm9082nw7zb9ycxs1s"; depends=[ape cluster geiger MASS phytools]; }; - convexjlr = derive2 { name="convexjlr"; version="0.6.1"; sha256="08p8vgjwd0d1b2x50sihq3nxxxvddg22qvbp6g416nmhqm9pw0wb"; depends=[JuliaCall magrittr XRJulia]; }; - convey = derive2 { name="convey"; version="0.2.0"; sha256="1sngpp769q13lp3ykk510di2iq06i7fc79z6mhdivmlw3pf40lcb"; depends=[survey]; }; + convexjlr = derive2 { name="convexjlr"; version="0.7.0"; sha256="1dxvz5jnflswqh7iqc4fw7gbp8s6qn7rfy2b5qx4jklrvfj696yj"; depends=[JuliaCall magrittr XRJulia]; }; + convey = derive2 { name="convey"; version="0.2.1"; sha256="1fcfzcpiy35xr2i81q002h07zf8gvbv1m5is7j475bi13666ynzh"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.4"; sha256="0by1z2z7gzycwrll1agkqnpn5h5cjr6b62gpwy11wl4lh48p4213"; depends=[ellipse fields geoR MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; cooccurNet = derive2 { name="cooccurNet"; version="0.1.6"; sha256="1vqfmvjrxxn977jrry47wn4lag4yi4bkyxwlis3n1ly39kkmyh2j"; depends=[bigmemory doParallel foreach igraph knitr Matrix pryr seqinr]; }; coop = derive2 { name="coop"; version="0.6-1"; sha256="1hr78w7qlslpwnrz9mk6w4p5qa8sxhkzans5givy5hf9qkykn0dp"; depends=[]; }; + coopProductGame = derive2 { name="coopProductGame"; version="1.0"; sha256="0vzx9f6za2zms9sda8p19gcmp4g6y87p91ydybjv8lz9na8hl3ix"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; - copBasic = derive2 { name="copBasic"; version="2.0.7"; sha256="05fikcba2nmr7lphdc17nlrhxqyv8mw81q26fycwhagmahbsm2ag"; depends=[lmomco randtoolbox]; }; + copBasic = derive2 { name="copBasic"; version="2.1.0"; sha256="16iax25jzm9613i2ml5d4xjknhycallrbcxhrsrsp8znlclbglqs"; depends=[lmomco randtoolbox]; }; copCAR = derive2 { name="copCAR"; version="2.0-2"; sha256="032gphv64v2mmy63q86qgpa31i36ix6fkjsdxmzgqyxcyzgb0jcy"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.3"; sha256="1chwsfyaf5rmlsypr43n7px8b2220dfa5mzcriq1swylgbx4181l"; depends=[]; }; @@ -5280,11 +5328,12 @@ in with self; { copulaData = derive2 { name="copulaData"; version="0.0-1"; sha256="1s917g8wasxndg1xq4b4fjaq29nyzzigpflgqcy4rxdb7r54dl0z"; depends=[]; }; copulaedas = derive2 { name="copulaedas"; version="1.4.2"; sha256="09w6b1m1lnlnsx0qp2mzlp0z9rxzz90qs9jqzwwjl56lzdad3vpr"; depends=[copula mvtnorm truncnorm vines]; }; corHMM = derive2 { name="corHMM"; version="1.22"; sha256="03di9250hjn5fiwn47f0pr4zprmsza4if3xpmy3j1czahc8zlqnj"; depends=[ape corpcor expm GenSA nloptr nnet numDeriv phangorn Rmpfr]; }; + corTest = derive2 { name="corTest"; version="0.9.6"; sha256="1ccb38jyl2nyff2m71pba7vs13nl59zzpdnc7k68333dd8p7zswa"; depends=[MASS]; }; corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; }; corclass = derive2 { name="corclass"; version="0.1.1"; sha256="0ai8si992f58mrvc8hq598zbw9d4jslnc96lpzj5d89lljjv3hf5"; depends=[igraph]; }; cord = derive2 { name="cord"; version="0.1.1"; sha256="18xj6cwmx1a7p3vqx5img8qf8s75nc6pcv78v15j081pgn786ma5"; depends=[Rcpp RcppArmadillo]; }; cordillera = derive2 { name="cordillera"; version="0.8-0"; sha256="0cpysfivwmim36gcqn1i7450a33hv4pdbvil7syb0hr7vdm083dd"; depends=[dbscan yesno]; }; - coreCT = derive2 { name="coreCT"; version="1.2.1"; sha256="19aq5snv5kin913rf0a1n9z0cg2l1jn2hnxbd0h05p1qrsysx52b"; depends=[igraph oro_dicom plyr raster]; }; + coreCT = derive2 { name="coreCT"; version="1.2.3"; sha256="1h4qvcdbx9y0q911xw5j66l16my7wdifvq2z6vbr17s0cmjfywbf"; depends=[igraph oro_dicom plyr raster]; }; coreNLP = derive2 { name="coreNLP"; version="0.4-2"; sha256="0rvyqj7s3lijq4rzil65060b29m393m7zmg99mykp1g1kby5bjd8"; depends=[rJava XML]; }; coreSim = derive2 { name="coreSim"; version="0.2.4"; sha256="1fhlss420rhs21l9i2ag5g3j0vnrkpqdh13ca4rwfan6h35qr3sm"; depends=[dplyr MASS]; }; coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; }; @@ -5294,7 +5343,7 @@ in with self; { corpcor = derive2 { name="corpcor"; version="1.6.9"; sha256="1hi3i9d3841snppq1ks5pd8cliq1b4rm4dpsczmfqvwksg8snkrf"; depends=[]; }; corpora = derive2 { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; }; corpus = derive2 { name="corpus"; version="0.10.0"; sha256="0c984rsnbai2qrm2s10lkdfgx31m0ax46zhl74bns2bxfmagcn3l"; depends=[utf8]; }; - corpustools = derive2 { name="corpustools"; version="0.3.1"; sha256="0723n7gjk4yrnbvars6c6a805cqpx21z9yn9745wbvfgq7a8c4hy"; depends=[data_table Matrix memoise plyr R6 Rcpp SnowballC stringi wordcloud]; }; + corpustools = derive2 { name="corpustools"; version="0.3.3"; sha256="1hgcwnjhqfyylvqcy2j5f2k6chwyybnx38vzzvq62s6qf6p9p7by"; depends=[data_table Matrix memoise plyr R6 Rcpp SnowballC stringi udpipe wordcloud]; }; corr2D = derive2 { name="corr2D"; version="0.2.0"; sha256="02z9k0j6j8jyjfgff55amkzsa5w0xbr9nqm1247qylsh8sl2rqcz"; depends=[colorspace doParallel fields foreach mmand rgl]; }; corrDNA = derive2 { name="corrDNA"; version="1.0.1"; sha256="1mfjrzpcb63ydyj1yxa0wd3vh4z0rdwsqv09w0a0l4l7mhb5jz2k"; depends=[mvtnorm]; }; correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; @@ -5326,15 +5375,15 @@ in with self; { covatest = derive2 { name="covatest"; version="1.0.0"; sha256="0g4wfwxngvcssi2bmmb2q5fv909z9qm4wfc8gcldz7fckbsc0k10"; depends=[gstat matrixcalc sp spacetime]; }; covequal = derive2 { name="covequal"; version="0.1.0"; sha256="1qj6djqf1rnjmnaz1nryj9dc104082w258dzjjp5q18gg1ck8v0c"; depends=[corpcor RMTstat]; }; covfefe = derive2 { name="covfefe"; version="0.1.0"; sha256="178qc77y4bn04qad3g70wr8y4v0ggyg807w67m8wvhbcxqr8yq7c"; depends=[tokenizers]; }; - covmat = derive2 { name="covmat"; version="1.0"; sha256="00y966897x83v471yarfikpr794b7adhgn5c9hgh0j1j4yfdc3b8"; depends=[DEoptim doParallel fGarch foreach ggplot2 gridExtra lhs Matrix mvtnorm optimx reshape2 RMTstat robust robustbase scales VIM xts zoo]; }; - covr = derive2 { name="covr"; version="3.0.1"; sha256="116ix1ihqsslfhqmm44978ziwgb083zz971d72msk0yb0gyrkdv6"; depends=[crayon httr jsonlite rex withr]; }; + covr = derive2 { name="covr"; version="3.1.0"; sha256="0ml7hpnwn0b4rgk0qx0pchz1m5b57issbvhl708lnb0bplvf00f7"; depends=[crayon digest httr jsonlite rex withr]; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; - covsep = derive2 { name="covsep"; version="1.0.0"; sha256="1i6ygzzf2s0f7a42q2pb1v0gn369wxdyxvbk4k891irq352sf18r"; depends=[mvtnorm]; }; + covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; }; cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; }; cowplot = derive2 { name="cowplot"; version="0.9.2"; sha256="13yjw7yv7imyqiawqqp304hkp6x36iv6rf6gn03dwzwkj9zwx4lb"; depends=[ggplot2 gtable plyr scales]; }; - cowsay = derive2 { name="cowsay"; version="0.5.0"; sha256="16rlpyfiwk2f04p49inf5m3pb5nvb45xs6sdfjszihm1hxl09x7x"; depends=[fortunes rmsfact]; }; + cowsay = derive2 { name="cowsay"; version="0.6.0"; sha256="15kiiqbh8bqdifbjh6ab9r595j2a4zyk4mgmy1w39sja1g95nlvi"; depends=[fortunes rmsfact]; }; + coxed = derive2 { name="coxed"; version="0.1.1"; sha256="1fk9vcrad8p2xdm1q7wcrd2fk9b59cfs3lvfxi8arkmmbz7pxrmq"; depends=[dplyr ggplot2 gridExtra mgcv PermAlgo rms survival tidyr]; }; coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; }; - coxme = derive2 { name="coxme"; version="2.2-7"; sha256="0jbaw055whbbxwx6y0gggj5i9rlr787nyknwgqdf1dnzrfzm69v7"; depends=[bdsmatrix Matrix nlme survival]; }; + coxme = derive2 { name="coxme"; version="2.2-10"; sha256="12p41qc3ryxdcw2zljgvw2gk1wl1pj7h61naqbyc1h0l3dqy8dg2"; depends=[bdsmatrix Matrix nlme survival]; }; coxphMIC = derive2 { name="coxphMIC"; version="0.1.0"; sha256="0lmma5wzcczr762xqa4yamvwvyviqxk8gdrps3sydg3n14hckp6d"; depends=[numDeriv survival]; }; coxphSGD = derive2 { name="coxphSGD"; version="0.2.1"; sha256="17ga33v7a89dsygk5yypkz03x7dvjhibnwlvwfvgb2p7djd8w465"; depends=[survival]; }; coxphf = derive2 { name="coxphf"; version="1.13"; sha256="16bman8xv5xx7gg8s54sj3hc4isqxk4h3q93h4q3h3j0bdvww2yy"; depends=[survival]; }; @@ -5347,7 +5396,7 @@ in with self; { cpgen = derive2 { name="cpgen"; version="0.1"; sha256="1cp3d6riy65lc1mfrxh92lc6f1qal7amhjilfzz0r529j5fipd2v"; depends=[Matrix pedigreemm Rcpp RcppEigen RcppProgress]; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; cplexAPI = derive2 { name="cplexAPI"; version="1.3.3"; sha256="1li5sbakkq8hrgwsa4i1qa5bdjj6vm6s9sq23ccknbb8bxp4zmwv"; depends=[]; }; - cplm = derive2 { name="cplm"; version="0.7-5"; sha256="16li79x2zyydi7gi4n8k09g9x2n1dgd9av3nqjnb0by3v31c44n0"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; + cplm = derive2 { name="cplm"; version="0.7-7"; sha256="1683j2zbjjrpny22dp23k2mgn0y63ydxccyw7fnr6ngl50504mfb"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cpm = derive2 { name="cpm"; version="2.2"; sha256="1n1iqhalp99mbh8jha0pv759fb97sqxdiiq9bxy3wm6aqmssvdb1"; depends=[]; }; cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cprr = derive2 { name="cprr"; version="0.1.1"; sha256="0bnq3961bqf1y1f37x60qkwmq50vnvcpv4axq0yw5n1mrs20mllj"; depends=[]; }; @@ -5357,12 +5406,11 @@ in with self; { cqrReg = derive2 { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; cquad = derive2 { name="cquad"; version="1.4"; sha256="1sxf30rikzr4mj1nyr12ys7gcnx5vq0rpd9djc2lkfbqlvi4mmai"; depends=[MASS plm]; }; cr17 = derive2 { name="cr17"; version="0.1.0"; sha256="1zyq77gxycbwyqhv5w0zw4n7v3ipjs6rcbja43g0k5q8h0gjnnn1"; depends=[cmprsk dplyr ggplot2 gridExtra gtable scales survival]; }; - crackR = derive2 { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[evd Hmisc]; }; cramer = derive2 { name="cramer"; version="0.9-1"; sha256="1dlapmqizff911v3jv8064ddg8viw28nq05hs77y5p4pi36gpyw4"; depends=[boot]; }; crank = derive2 { name="crank"; version="1.1"; sha256="117sgq7zm5wxmd97sfc927qq70snra6vd090mhpcsdhipw1py6zc"; depends=[]; }; cranlike = derive2 { name="cranlike"; version="1.0.1"; sha256="0lnbdkyk5mdy0qlvkx2hakqrisrxsdp5r3gif6f46pf4d9cpfj8v"; depends=[DBI debugme desc RSQLite]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.0"; sha256="1w1nbifjb9l106fk97zy0w73x73bw5azq89l3c1b8r2fz8aljkkc"; depends=[httr jsonlite]; }; - cranly = derive2 { name="cranly"; version="0.1"; sha256="1q6x6v77z6y540shyqpiq0p78rp02mmhdmnq79hvlm9ykqblzrcr"; depends=[colorspace countrycode ggplot2 igraph magrittr stringr visNetwork]; }; + cranly = derive2 { name="cranly"; version="0.2"; sha256="0h6yfj805kbprgj28x43iz6lcjsv39vxdf33j9gg2gnmgr5zja67"; depends=[colorspace countrycode ggplot2 igraph magrittr stringr visNetwork]; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; crawl = derive2 { name="crawl"; version="2.1.1"; sha256="0dr9z8y8rvc3wn1gjb6mh5wmszng9j1r2a9ks6p5am8ghf754sps"; depends=[dplyr gdistance mvtnorm raster Rcpp RcppArmadillo shiny sp]; }; crayon = derive2 { name="crayon"; version="1.3.4"; sha256="0s7s6vc3ww8pzanpjisym4jjvwcc5pi2qg8srx7jqlz9j3wrnvpw"; depends=[]; }; @@ -5371,7 +5419,7 @@ in with self; { creditr = derive2 { name="creditr"; version="0.6.1"; sha256="1dhjl99gjc97bdsdg29mq6xifivjn9kr0y7m2jzvrzb26x856z97"; depends=[devtools quantmod Rcpp RCurl XML xts zoo]; }; credsubs = derive2 { name="credsubs"; version="1.0"; sha256="12bs1whk23y41hxa976j30d31x81rmxapz9ll5y2hi5c1h4fypn4"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; }; - cricketr = derive2 { name="cricketr"; version="0.0.14"; sha256="0vziyagx594d0k44c53z720vwb1hflcxb7m898l5vfds8jsi6mhv"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; }; + cricketr = derive2 { name="cricketr"; version="0.0.15"; sha256="0jf9a8kfhzydmspmgh2mxb18q4adbjm3jiz3brxpl42d64agq7qj"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; }; crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; @@ -5391,21 +5439,22 @@ in with self; { crosswalkr = derive2 { name="crosswalkr"; version="0.1.1"; sha256="0yk5yxxsd1alfbfjg5bzjc5b07jfj5s551bzrv3dg57hxnqw9b2z"; depends=[dplyr haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.5"; sha256="1h6r5rrmla3jsdfnkxsv4drvp3nrkqkygqv9ak0pn37zlbms99z9"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crp_CSFP = derive2 { name="crp.CSFP"; version="2.0.2"; sha256="0gazmhf5bv994x441m2xm0w18h9lw3y68qzdf6gmyqimj4wjqjgf"; depends=[MASS]; }; - crplyr = derive2 { name="crplyr"; version="0.1.4"; sha256="1z50hplp6m4zgjfhmf2j8b22np6kjzqnprrdc0qx8408cb9vc9zr"; depends=[crunch dplyr lazyeval tibble]; }; - crqa = derive2 { name="crqa"; version="1.0.6"; sha256="1v9fwl98jjlg2z5skqsjmmgpmmxy4g1gzvc28yflvdp50qn509v8"; depends=[fields Matrix plot3D pracma tseriesChaos]; }; + crplyr = derive2 { name="crplyr"; version="0.2.0"; sha256="14j0cn3ci6vbmimcinzp25ym0h264405jn8gw7w0gk3rcamgh50s"; depends=[crunch dplyr lazyeval purrr rlang stringr tibble]; }; + crqa = derive2 { name="crqa"; version="1.0.7"; sha256="008dmrgsajm73r3fl3lqsd4pgkdacpx6m48xg61yc02xciv7ad2b"; depends=[fields Matrix plot3D pracma tseriesChaos]; }; crqanlp = derive2 { name="crqanlp"; version="0.3"; sha256="1ndd5k44w232x6k564r84lyahljgcnldfwgih3iiar3il94drbdg"; depends=[corpus crqa gutenbergr RCurl tm]; }; crrSC = derive2 { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; - crs = derive2 { name="crs"; version="0.15-30"; sha256="1mv5rf8xfgqlqnvmgsj0zdpwlddzv4d0ymsjl00g21zjq4805g09"; depends=[boot np quantreg rgl]; }; + crs = derive2 { name="crs"; version="0.15-31"; sha256="0h8hhxnyy8lf7jpnvriaa5dn3zgp1yqhfrnc5rpjlzsx2lnyyv9r"; depends=[boot np quantreg rgl]; }; crskdiag = derive2 { name="crskdiag"; version="1.0.1"; sha256="0100wbyvchx6jwlrwc6rwhdjanips5c0f5zqzs2c0dgwygpqw30w"; depends=[cmprsk]; }; crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; + crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; crul = derive2 { name="crul"; version="0.5.2"; sha256="0sfjv8jrb5x85b4dicp7789xxa0g6y89sfd96war84yidmh2a6z0"; depends=[curl httpcode mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.20.0"; sha256="1hsya10ba6mb3xd1lvbn2d74g9glm0l98fbh130phq5wdnn8lpx9"; depends=[crayon curl httpcache httr jsonlite]; }; + crunch = derive2 { name="crunch"; version="1.23.0"; sha256="0mcq4qnhn3gadq2ssglvh5wid0a0clkxza3zikxrxwa69vjp7x3q"; depends=[crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.2.0"; sha256="1q9mqpkg5ljb798922fmvjjp36kyjr1rrm6jf3s2fwjrhq186y3z"; depends=[crunch shiny]; }; - cruts = derive2 { name="cruts"; version="0.3"; sha256="0yn6xc2wg23nkjnsb7kii7dn897wf4ymnpmgppacrsznl8mmlmgd"; depends=[lubridate ncdf4 raster sp stringr]; }; - crypto = derive2 { name="crypto"; version="0.1.5"; sha256="0yqdn14mv8cbn2nmxflhyn46fqbrk3iknjg3bqxyj5k426q3zqx4"; depends=[curl doSNOW dplyr foreach jsonlite lubridate magrittr rvest tidyr xml2]; }; + cruts = derive2 { name="cruts"; version="0.4"; sha256="0flhlv9pabmj667azc7vjacmk4d512s34xlrip176s8cmswprzg1"; depends=[lubridate ncdf4 raster sp stringr]; }; + crypto = derive2 { name="crypto"; version="1.0.2"; sha256="16k08kbn8lr3ycf61imc3fd0vdm2w1rzzn11c6vv7s8kfwvdcfdl"; depends=[curl doSNOW dplyr foreach jsonlite lubridate magrittr rvest tidyr xml2 xts yaml]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; }; @@ -5415,27 +5464,27 @@ in with self; { csp = derive2 { name="csp"; version="0.1.0"; sha256="1pc5mcn9difpp4cmfb0a8pqhbpkfakxjkbr7bpqmfiwcfk8rzr1h"; depends=[]; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; }; cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; - cstab = derive2 { name="cstab"; version="0.2-1"; sha256="08s1vann21k4afq84cp3gjzn2z0hqr7mb2znag0qyd9lzh3z6jd2"; depends=[cluster fastcluster Rcpp]; }; + cstab = derive2 { name="cstab"; version="0.2-2"; sha256="1lr401fvi88f4jv8jh4brx95ymncfw8clripz1r6a46inj80nj4j"; depends=[cluster fastcluster Rcpp]; }; cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; }; csv = derive2 { name="csv"; version="0.5.2"; sha256="1gwib79fysmiwaw48ghsygyqgc00j5zwy7lfgcziw1kp6nxkdk19"; depends=[]; }; csvread = derive2 { name="csvread"; version="1.2"; sha256="1zx43g4f4kr7jcmiplzjqk2nw1g5kmmfap85wk88phf6fp0w8l5p"; depends=[]; }; csvy = derive2 { name="csvy"; version="0.1.3"; sha256="0vszbxqa88sdsi73wng4y8zxhrvcksqa6qs3rbh50c2nll8r8kb3"; depends=[yaml]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-0"; sha256="12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j"; depends=[MASS qtl]; }; - ctmcd = derive2 { name="ctmcd"; version="1.2"; sha256="0ci2lcbyl94c6nkwwd6birhdklj936qh79cdnanb50jjfbv75wyz"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; - ctmcmove = derive2 { name="ctmcmove"; version="1.2.8"; sha256="16qi4y3ivcys2dfixm4vzyqbqbm2j1gc1l4bjrrp46c268qja2z3"; depends=[fda gdistance Matrix raster sp]; }; + ctmcd = derive2 { name="ctmcd"; version="1.3.5"; sha256="0nsazcfa8bg5r2ki5wf4v6q2ws47wk97zr4a5h9jj0mp1900rz2l"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; + ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.1"; sha256="1k9nr2xbaqrbpp31vdcnmpwyazcw79k0r3gbcbinva4pgv2psp29"; depends=[glmnet SuperLearner tmle]; }; - ctmm = derive2 { name="ctmm"; version="0.4.1"; sha256="1ggq86j643k2xrl1lbkp9is5759fw63vq544z69bfxm889925bm0"; depends=[data_table expm fasttime manipulate MASS Matrix numDeriv pbivnorm raster rgdal scales]; }; + ctmm = derive2 { name="ctmm"; version="0.5.0"; sha256="1lz07gsly4acdwmv62l01g3rmmjwkiww8hsxlbx0cp0jmk63znn1"; depends=[data_table expm fasttime Gmedian manipulate MASS Matrix numDeriv pbivnorm pracma raster rgdal scales shape]; }; ctqr = derive2 { name="ctqr"; version="1.0"; sha256="1q4icv8qicgwr664cbrmkh2x9xmlrc80yvz8gnaqh86248kn4yp3"; depends=[pch survival]; }; cts = derive2 { name="cts"; version="1.0-21"; sha256="0wagxqb8msjc8z33qp7sc92l53f56d9bzz9160bmgpjxlj6cnqcj"; depends=[]; }; - ctsem = derive2 { name="ctsem"; version="2.5.0"; sha256="15k2f9x436n78k63izgg31083spwh4r42s843h69kpvz25717m6p"; depends=[Matrix OpenMx plyr Rcpp rstan shiny]; }; - ctv = derive2 { name="ctv"; version="0.8-4"; sha256="0yl20b1j8c11b1g0q6qv0wsaivxpikwslhky4lckbm3rwbn5vbb2"; depends=[]; }; - cubature = derive2 { name="cubature"; version="1.3-11"; sha256="06f6gsvbb732p80r6hxvzh4ik546icxfvx21dyh65ypmw3kgm64k"; depends=[Rcpp]; }; + ctsem = derive2 { name="ctsem"; version="2.6.5"; sha256="0dk1q18sd4s5ynxq8sdhxc7p35qqc6z87d001pykbr0kzszyf9c2"; depends=[BH corrplot MASS Matrix mvtnorm OpenMx plyr Rcpp RcppEigen rstan rstantools shiny StanHeaders]; }; + ctv = derive2 { name="ctv"; version="0.8-5"; sha256="0kl6z8dbbjgm29q0c5xy6lihjgf5cdihrllm27x0zbcvy8lyl51p"; depends=[]; }; + cubature = derive2 { name="cubature"; version="1.4"; sha256="1hd23b8v2kpqp5gr0va8p2q7j8w9rik6ks7zrr4b8mb2mwrakk74"; depends=[Rcpp]; }; cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; }; - cubing = derive2 { name="cubing"; version="1.0-4"; sha256="11aln47l8ni33k3mmadccnphsv1rad4n5llg9ff5lpjyk9gn3am8"; depends=[rgl]; }; + cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; }; cudaBayesreg = derive2 { name="cudaBayesreg"; version="0.3-16"; sha256="1xsamdsg4cq7l5r7czkg70j5gypf1dak3h353xfbz3rq0r0dni19"; depends=[cudaBayesregData oro_nifti]; }; cudaBayesregData = derive2 { name="cudaBayesregData"; version="0.3-11"; sha256="1cls9xqgps7icjpi1mllkrksdxwc1jfhxgffvrcrqx2l16vw6qfx"; depends=[]; }; - cudia = derive2 { name="cudia"; version="0.1"; sha256="1ms3bc8sp6l3bm75j418mmb707sy3gyvxznhfias3nd4sw7i074x"; depends=[MCMCpack mvtnorm]; }; + cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; cumSeg = derive2 { name="cumSeg"; version="1.1"; sha256="01hn3j1i7bi2r9vsqwbgy1f1alcisxyf4316xx57bg82lb34d0s5"; depends=[lars]; }; cumplyr = derive2 { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; }; cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; @@ -5445,7 +5494,6 @@ in with self; { curstatCI = derive2 { name="curstatCI"; version="0.1.1"; sha256="0igqdv0fzzji10gz3j3ir8qxpy7vdjfl137067rc28qzbrl2sy2c"; depends=[Rcpp]; }; curvHDR = derive2 { name="curvHDR"; version="1.2-0"; sha256="185097ikqhmqqc4ha7l74inx5cmg1bhgw3cw40wk0ngc4wv4sfqi"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; - curvetest = derive2 { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_methodsS3 R_oo]; }; cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.1"; sha256="0rlfsnhmmcwx7iyjavj03v4kdfzxcqjggi8qpgmi6lkli3n0s6pg"; depends=[FNN glmnet]; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; @@ -5463,6 +5511,7 @@ in with self; { cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; + cyclestreets = derive2 { name="cyclestreets"; version="0.1.5"; sha256="1wvg43wrnh0lz2pkkrbidzdsrkypdl2r4ccs9jhdsj8ixm158dvf"; depends=[httr jsonlite magrittr sf stringr]; }; cyclocomp = derive2 { name="cyclocomp"; version="1.1.0"; sha256="0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"; depends=[callr crayon desc remotes withr]; }; cycloids = derive2 { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; }; cymruservices = derive2 { name="cymruservices"; version="0.2.0"; sha256="1pgk9llaz0glhgf3n60nq3xb8kp4jkk8paz4scxff3whyksxv4yn"; depends=[purrr stringr]; }; @@ -5475,7 +5524,7 @@ in with self; { d3Tree = derive2 { name="d3Tree"; version="0.2.0"; sha256="0xjr36hdd00dy8s8z1a1s44dn2wg0nm6yqc1rri2l0dqrbh4nrbn"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.2"; sha256="1ici8j0wzzklhmw94qlxm292qs562vc32wq8mnjsas2n1p35vkmk"; depends=[base64enc dendextend htmlwidgets png scales]; }; d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; - d3r = derive2 { name="d3r"; version="0.8.0"; sha256="1zx351g4kl45dlva8q4ah3wdjvxjzssjpa280ljypfml3iqkzx70"; depends=[dplyr htmltools tidyr]; }; + d3r = derive2 { name="d3r"; version="0.8.2"; sha256="1i8y2pr79v2mfwgi6sgibsgwp0l717yf86dn07l39nfgyrxgx9f4"; depends=[dplyr htmltools tidyr]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; }; @@ -5483,8 +5532,8 @@ in with self; { dLagM = derive2 { name="dLagM"; version="1.0.2"; sha256="0wl1sivphm6plmvjixxs90ki8a1pi4nb2vxqdm5xxbi0ljwpgl1x"; depends=[AER dynlm formula_tools Hmisc plyr wavethresh]; }; dMod = derive2 { name="dMod"; version="0.4"; sha256="12q80pk0j5081qz4rb19iib0n4h1yf1c42iq1z14yyrmki3266pm"; depends=[cOde deSolve ggplot2 plyr rootSolve stringr]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; - dad = derive2 { name="dad"; version="3.1.0"; sha256="1vwwcrawci8v5rz3al2647gypk0bpngvngkb5s6zxhrdvk785m9a"; depends=[e1071 lattice]; }; - dae = derive2 { name="dae"; version="3.0-12"; sha256="0xp6cyyk4s06igh2jvrdr28n0bhma79c4cfqxx9mihfx9hcw4bh9"; depends=[ggplot2]; }; + dad = derive2 { name="dad"; version="3.1.1"; sha256="120f7asg3hbr0c5n821jdr8c7cz67dbv1v646v6xgnyy4n6ym2qa"; depends=[e1071 lattice]; }; + dae = derive2 { name="dae"; version="3.0-16"; sha256="0nryjijr6cq0pm02ik58lish57ld3nfd16c908jq40dhgws2q7x9"; depends=[ggplot2]; }; daewr = derive2 { name="daewr"; version="1.1-7"; sha256="01n9g3adjk66wx9lm9gl6wa3y9ba5w0w0p5ayj8rx5ywxnm8fnvi"; depends=[BsMD FrF2 lattice]; }; daff = derive2 { name="daff"; version="0.3.0"; sha256="1kl5pjwxds6bz58zd5xaa1hknd6f9i0512895fhljqi7kvsrldra"; depends=[jsonlite V8]; }; dafs = derive2 { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; }; @@ -5492,33 +5541,34 @@ in with self; { dagitty = derive2 { name="dagitty"; version="0.2-2"; sha256="11jpjr2l89glr9962mbhy4dfbdjs80nf603w90xx16s4qcmcsghc"; depends=[boot jsonlite MASS V8]; }; dalmatian = derive2 { name="dalmatian"; version="0.3.0"; sha256="06j7ampp0hwjqgw2agplfc8mngxnb6g4yv3l08plg35769jxxz7f"; depends=[coda dglm gdata ggmcmc rjags]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; + damr = derive2 { name="damr"; version="0.3.1"; sha256="1hxsbs2kfv1js4mbllk7fkv3h0gkmw6cymakwj426hk7p8ppb586"; depends=[behavr data_table readr]; }; dams = derive2 { name="dams"; version="0.2"; sha256="0hf5s8i61r5q4h3s8dfmdl3vkj7v15ha59pjvpjqx3yihsgziqz9"; depends=[RCurl]; }; darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; - dartR = derive2 { name="dartR"; version="1.0"; sha256="1pp739vwvs4k2a3xnkywvaxppkr764zgf5jfrf8l8830jidg2fsc"; depends=[adegenet ape data_table DBI Demerelate directlabels dismo doParallel foreach ggplot2 MASS misc3d pca3d pegas plotly plyr quadprog qvalue reshape2 rgdal rgl seqinr SNPassoc SNPRelate sp StAMPP stringr tidyr vegan]; }; + dartR = derive2 { name="dartR"; version="1.0.5"; sha256="1xdkkxwarmspakiabds6j6zr5fmm6s7rz2f5c87c4ai2xx1mcazw"; depends=[adegenet ape data_table DBI Demerelate directlabels dismo doParallel foreach ggplot2 MASS misc3d pca3d pegas plotly plyr quadprog qvalue reshape2 rgdal rgl seqinr SNPassoc SNPRelate sp StAMPP stringr tidyr vegan]; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; }; dat = derive2 { name="dat"; version="0.4.0"; sha256="1nw16hsw9b4hpcl5rqrlw6yk9y2h1pd0ra1c7iz82sknkyd5afi6"; depends=[aoos data_table dplyr Formula magrittr progress tibble]; }; - data_table = derive2 { name="data.table"; version="1.10.4-3"; sha256="12caklgr19vy9wprdks6zh825vr1iw1cajgwcnbpyvmijqdlz2xs"; depends=[]; }; - data_tree = derive2 { name="data.tree"; version="0.7.5"; sha256="07mavj30pqgk831dw5nj0z0jri6fq8wx9a6nyx0q873if7q3j52w"; depends=[DiagrammeR R6 stringr]; }; + data_table = derive2 { name="data.table"; version="1.11.4"; sha256="1mc1drqj5i5ar2za3nkh5j70y37s7z7xwqri2r2b72zkqggg3k7x"; depends=[]; }; + data_tree = derive2 { name="data.tree"; version="0.7.6"; sha256="0fq7wsql4rmbfjif3klccciq7iqhrwjirj21il6n9r5f1i6x5qxn"; depends=[DiagrammeR R6 stringr]; }; data_world = derive2 { name="data.world"; version="1.2.2"; sha256="1d9hh4965f2d0lwh2xxhnxzc948ailkjzdax3d3z9l8lakqfrx0h"; depends=[dwapi httr ini miniUI shiny stringi]; }; data360r = derive2 { name="data360r"; version="1.0.1"; sha256="1g245zg70ch81zjmd1ng16lks38qr0a6m63y582w558mza7v148g"; depends=[curl data_table jsonlite reshape2]; }; dataCompareR = derive2 { name="dataCompareR"; version="0.1.1"; sha256="06nba2yir2yz1189bsag9yavdf9hfmpswxdy92dlnbz9d27jjsic"; depends=[dplyr knitr markdown stringi]; }; - dataMaid = derive2 { name="dataMaid"; version="1.1.0"; sha256="1scpyc0c4rcb0hk1dnzaqprb59n9vrngkg2h1h1knl5klxabkj2y"; depends=[ggplot2 gridExtra haven htmltools magrittr pander robustbase whoami]; }; + dataMaid = derive2 { name="dataMaid"; version="1.1.2"; sha256="1phy03bya6zd3xpypic3ymjqgx8iv2y8661mfyvbz99a2bvspj5a"; depends=[ggplot2 gridExtra haven htmltools magrittr pander robustbase whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; - dataPreparation = derive2 { name="dataPreparation"; version="0.3.5"; sha256="186xi3nbjgqwf8kilinzd92kzwdazgcpmbb5q420vrs2va6dv0x8"; depends=[data_table lubridate Matrix progress stringr]; }; + dataPreparation = derive2 { name="dataPreparation"; version="0.3.6"; sha256="1nx9lbwrp55wyirqyfmwddilinhyd9428l9n4kb8bwms7hjcf18h"; depends=[data_table lubridate Matrix progress stringr]; }; dataQualityR = derive2 { name="dataQualityR"; version="1.0"; sha256="0f2410sd6kldv7zkqsmbz1js0p5iq7zwlnfwmmnlbrd303p35p3j"; depends=[]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.3"; sha256="0lrv6fyqi7k079wdpqilgjlb4j2qfs3r02d9ip8s9yznfwqsl826"; depends=[curl dplyr httr jsonlite lubridate readr reshape2 xml2]; }; datacheck = derive2 { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; }; datacheckr = derive2 { name="datacheckr"; version="0.2.0"; sha256="1kk38pb4dsy6ll6drz2gsngzsv81pwmjrbvh3izm22h849mvlypv"; depends=[]; }; - datadogr = derive2 { name="datadogr"; version="0.1.1"; sha256="1b6c5c3m005zlky67gi9lf1y0938gdjyjs8yjg7x51h848sy4i5p"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; + datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; datadr = derive2 { name="datadr"; version="0.8.6"; sha256="0fmywnxcvw31vfb9iaxqiw19ycnd98v41pdsdknabysr7fpnygfq"; depends=[codetools data_table digest dplyr hexbin magrittr]; }; dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.1"; sha256="16l6ssprsvnpzxlfnqj7r061x700704s5gdci5x9ixdjmglakmdd"; depends=[caret GA Rcpp]; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; - datamaps = derive2 { name="datamaps"; version="0.0.2"; sha256="01pjv5f764vw8krq9mrwnih8a8akkqa5779igh4ddh0av32gswd8"; depends=[htmlwidgets magrittr]; }; + datamaps = derive2 { name="datamaps"; version="0.0.3"; sha256="00pvns98miq56z3prbb5qg608d5ns9wbp0711x3mmqg0bld1xwmp"; depends=[htmlwidgets magrittr]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.3.1"; sha256="0q1zd1l7l0hmbs1bx469d706rmprjbz2f2dgcnfp9wxfgqpfxkz1"; depends=[assertthat httr lubridate readr tibble]; }; - dataone = derive2 { name="dataone"; version="2.1.0"; sha256="0vpa4gb30dvxax4sxbnbn8gblnzdfcf2k0v5js3gqwjb95ah4w4y"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; + dataone = derive2 { name="dataone"; version="2.1.1"; sha256="17x1v1v13v06qyjb5mvxcdnlp7ln73rhgaib1w1sc44385m33hxs"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.3.1"; sha256="0hzc68vgjvpm235zg8k2642c3jzh3ls9kp6lpz720y1b56q8k3n7"; depends=[digest hash redland uuid XML]; }; datapasta = derive2 { name="datapasta"; version="3.0.0"; sha256="022ci7iy683lh3fh13a4b3szzqp6j4fchil695bifhi0a34bnxyr"; depends=[clipr readr rstudioapi]; }; datarobot = derive2 { name="datarobot"; version="2.8.0"; sha256="06yqp1lvskvcyiz8a2jy7kzv721qrvf5ycw6g9jl2bj84raifmap"; depends=[curl httr jsonlite yaml]; }; @@ -5526,8 +5576,8 @@ in with self; { dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; datasets_load = derive2 { name="datasets.load"; version="0.1.0"; sha256="029rxg0h17nszkxgq5kjd0njymb8pgdsabmz5slshzd2ijjh82jz"; depends=[DT miniUI shiny]; }; datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; - datastructures = derive2 { name="datastructures"; version="0.2.5"; sha256="0vg7s6l0d9x768j0b6nw93914raybkym0f3l7f0jpwbj265isfs1"; depends=[BH purrr Rcpp]; }; - datasus = derive2 { name="datasus"; version="0.4.0"; sha256="18mvgdzk2f2plzgz9w47w4zxbdz24rymxvjv08j0cm242pcl11l7"; depends=[dplyr httr magrittr RCurl readr rvest stringi stringr xml2]; }; + datastructures = derive2 { name="datastructures"; version="0.2.6"; sha256="1sigcm4w9fj6i538vpf939x9blwx2cfa626lfc8ya8fr8wd5w7vg"; depends=[BH purrr Rcpp]; }; + datasus = derive2 { name="datasus"; version="0.4.1"; sha256="175bzhjigri49p4v9v3kwdc233w0l3v35220m05qsbpn6in7gw67"; depends=[dplyr httr magrittr RCurl readr rvest stringi stringr xml2]; }; datautils = derive2 { name="datautils"; version="0.1.5"; sha256="1yy25a84zmfh54jvxwa7mv4j296rmjgd40m4p81mrsswlqvncmfn"; depends=[deldir gplots gtools]; }; dataverse = derive2 { name="dataverse"; version="0.2.0"; sha256="0lyga8rdsir2yr1n9nr10iiaf6a7dxp1nb04bx8mq8ljrvpkgr8n"; depends=[httr jsonlite xml2]; }; dataview = derive2 { name="dataview"; version="2.1.1"; sha256="1nn33h5c1h4a3zm1xm7sdz4s6sy0f3r53jhm7bv6qk7aiylwqf6v"; depends=[data_table xtermStyle]; }; @@ -5538,20 +5588,21 @@ in with self; { datr = derive2 { name="datr"; version="0.1.0"; sha256="0sqwhn6zdaq8i45ry207mpbda1djjaxp9mcn13hi5wkry6z0bmlr"; depends=[devtools]; }; dave = derive2 { name="dave"; version="2.0"; sha256="1rraphpp34czyjj15xzvj1ihlnqzcppqls9n2g85n49zv0n1ngn8"; depends=[cluster labdsv nnet tree vegan]; }; dawai = derive2 { name="dawai"; version="1.2.3"; sha256="18dg81d1018f8ibm4p43ih6fjgm6r0qs5phqbp7pqrixjj3ydk58"; depends=[boot ibdreg mvtnorm]; }; - daymetr = derive2 { name="daymetr"; version="1.3.1"; sha256="034yhyq58ihb9faqsqqwbhhrp64kxim0ix6nwiyx7cxahikvdsiy"; depends=[httr ncdf4 raster rgdal rgeos sp]; }; + daymetr = derive2 { name="daymetr"; version="1.3.3"; sha256="0hq1jrkfbww3p1s4dqvm9nzg7lfhrr4ax142vr8dvrsyr6s7gg8g"; depends=[httr raster sp]; }; dbConnect = derive2 { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[gWidgets RMySQL]; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; }; - dbarts = derive2 { name="dbarts"; version="0.9-3"; sha256="0mxpvfaily4712k8q5wiby7rhvqm28qqi1v4b3csnlm9f0260gzi"; depends=[]; }; + dbarts = derive2 { name="dbarts"; version="0.9-4"; sha256="1xglsx2x8jq71q5y377kcc92j8nymh3v11idjj44gixpm8lspljc"; depends=[]; }; dbfaker = derive2 { name="dbfaker"; version="0.1.0"; sha256="00n2z4q5drpg26pw826i16rg07m7w66a0r466q2lrl14hxs4rcaq"; depends=[assertive DBI dplyr foreach parsedate RPostgreSQL tidyr]; }; - dbhydroR = derive2 { name="dbhydroR"; version="0.2-4"; sha256="189yzc7nchl31203jadf6qs3w1d3s01ifn9y6403c11qm4y63fpf"; depends=[httr reshape2 XML]; }; + dbhydroR = derive2 { name="dbhydroR"; version="0.2-5"; sha256="1vldyc7ksi0pbdvnydbsjzap3ghh447x5c15n0s5isw82mqssnjz"; depends=[httr reshape2 XML]; }; dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; dbmss = derive2 { name="dbmss"; version="2.6-3"; sha256="0b3vbsb01rz46mspfk8v9dgwqkxnjkv5d6152zg1zsvyv0z9wvqd"; depends=[cubature Rcpp RcppParallel spatstat spatstat_utils]; }; - dbplot = derive2 { name="dbplot"; version="0.2.1"; sha256="1ksjxvq8y5n5vwnpvxwbdmcywnld9fnkmq63ckcv7nbgbiyi5wgw"; depends=[dplyr ggplot2 rlang]; }; + dbplot = derive2 { name="dbplot"; version="0.3.0"; sha256="1sdhw73a518pj81p4xzfkyk5qnfvv7pmizqgwypmkmr3j87klkdx"; depends=[dplyr ggplot2 purrr rlang]; }; dbplyr = derive2 { name="dbplyr"; version="1.2.1"; sha256="1nwrls9c3kc9q7405jp6b9sh23642sz13yw55iikgw134shffj5k"; depends=[assertthat DBI dplyr glue purrr R6 rlang tibble tidyselect]; }; - dbscan = derive2 { name="dbscan"; version="1.1-1"; sha256="09rh3x4g3xv5f1p8wbc847z8khj7v2r5vz9yf1lfdiy23q2w3xp1"; depends=[Rcpp]; }; + dbscan = derive2 { name="dbscan"; version="1.1-2"; sha256="08s73i1pnyfsm10sf15rnn58lj1pzrca6i38dq5ivr5xghb3pksy"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="1.0.5"; sha256="0pr80mx8y87l96hhg0rp3ajxl7yx2f8qr0y1zrjkbzxavjmp9k34"; depends=[cluster pls]; }; + dbx = derive2 { name="dbx"; version="0.1.0"; sha256="026iqa2wnh0amkv0nnflg3wyqnfrh94imrw486k5i1561abdzndq"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dcemriS4 = derive2 { name="dcemriS4"; version="0.55"; sha256="15x4hjc5fwpn80h90q5x9a3p84pp3mxsmcx4hq5l0j52l9dy9nv3"; depends=[oro_nifti]; }; @@ -5560,24 +5611,22 @@ in with self; { dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; }; dcmodify = derive2 { name="dcmodify"; version="0.1.1"; sha256="1a909v6jhihwwmq7lzv2xazrkfa1553kbrjsbjfsh1qrqdiam3sr"; depends=[settings validate yaml]; }; dcmr = derive2 { name="dcmr"; version="1.0"; sha256="1a89wr1n8sykjbwa316zlmcffaysksrqnbd89anxqj8sgw9xv6jq"; depends=[ggplot2 KFAS plyr reshape2 tableplot]; }; - dcurver = derive2 { name="dcurver"; version="0.9.0"; sha256="16qb5lvwxzkffv1gf0gp8dsvaxipwhgnl3y6qqg0h0qx8gynf217"; depends=[Rcpp RcppArmadillo]; }; + dcurver = derive2 { name="dcurver"; version="0.9.1"; sha256="1cfy0j3rmi3laszrgd3i59cfy4xfs2p6h9dcwbkwq6wnshrpypfn"; depends=[Rcpp RcppArmadillo]; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; - ddalpha = derive2 { name="ddalpha"; version="1.3.2"; sha256="1i2zcz20zy9xd42kdz09njbkq07mj2pp6f07z6dnwi5hrmvhbh9r"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; + ddalpha = derive2 { name="ddalpha"; version="1.3.4"; sha256="16cn0bhbaz9l9k4y79sv2d4f7pvs7dyka273y89igs5jvr99kfj1"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; ddeploy = derive2 { name="ddeploy"; version="1.0.4"; sha256="06s4mn93sl33gldda9qab8l3nqig8zq0fh1s2f98igsysmn31br5"; depends=[httr jsonlite]; }; - ddpcr = derive2 { name="ddpcr"; version="1.8"; sha256="11bk4mhiqn73sjji2wz47v7jqqg9kq3amci9m6a88h4fvvgmpcz4"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs]; }; + ddpcr = derive2 { name="ddpcr"; version="1.9"; sha256="0xdy36wdl972xgzs3chzs7x1n4z1xvj1vahcz2pxa1wrr4sd9z8q"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.2"; sha256="108vijk71sgsj14hwfv78r4lnn68cybvnpr92zvrvl0d82b7qxfd"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deGradInfer = derive2 { name="deGradInfer"; version="1.0.0"; sha256="1wl1pw1rwins4gr47a8ii4diw6wd6cx8ib4l5bhri5f3crbw7l86"; depends=[deSolve gdata gptk]; }; - deSolve = derive2 { name="deSolve"; version="1.20"; sha256="18nx3maww979a8p8ly4hv63y65mnjx8vbj2fpipd6rhcbf1lbsan"; depends=[]; }; + deSolve = derive2 { name="deSolve"; version="1.21"; sha256="0qqc4mknw1jblzcmph1dg3k1p6w42yal0k1xjh8pqk7yb3a75hs5"; depends=[]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.5"; sha256="07wbgniwkpp0yry6wvchvszr8isxs1i9k6km951r5c009w1iviwk"; depends=[deSolve]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; - deal = derive2 { name="deal"; version="1.2-37"; sha256="1nn2blmxz3j5yzpwfviarnmabbyivc25cbfhcf814avrhpysvpxa"; depends=[]; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; }; - debug = derive2 { name="debug"; version="1.3.1"; sha256="0mpwi6sippxyr1l8xf48xqv6qw6pmfkxs13k1gjyd7bkzlbchgqd"; depends=[mvbutils]; }; debugme = derive2 { name="debugme"; version="1.1.0"; sha256="1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"; depends=[crayon]; }; decido = derive2 { name="decido"; version="0.1.0"; sha256="1d53qcpy165f9izaj0x5x5d5h7jvihhk6mghs9g52dfxrvpndfgn"; depends=[oz Rcpp]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.103.6"; sha256="1lfv1a9pcf1f7la1vxpwvw8abk4jbq7cmalp374l0xasfyin2mr5"; depends=[chillR msm mvtnorm nleqslv rriskDistributions]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.103.7"; sha256="1nmrr0fic391sxxfnyp32yb889bwb3zkyb4b8g8sk2pgrsqrbybl"; depends=[chillR msm mvtnorm nleqslv rriskDistributions]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.1.12"; sha256="0jacp5fqi3l87a86kzhivwd7bl9ndcpymw1vkzmr9r5my8d119pk"; depends=[backports]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; }; @@ -5588,6 +5637,7 @@ in with self; { deducorrect = derive2 { name="deducorrect"; version="1.3.7"; sha256="10lvhdnnc6xiy20hy6s5rpqcvilj8x0y6sn92rfjkdbfsl00sslp"; depends=[editrules]; }; deductive = derive2 { name="deductive"; version="0.1.2"; sha256="1lz849p0if16877gndkxh7khx1rdvaayhps6khypayddajjr1njq"; depends=[lintools stringdist validate]; }; deepboost = derive2 { name="deepboost"; version="0.1.6"; sha256="1nf9gjk9gjl2dz7cr3vh5lg8nxkbqwr82a132nw853axbdgbs9ga"; depends=[Rcpp]; }; + deeplr = derive2 { name="deeplr"; version="1.0.0"; sha256="0pg1vy4x53qns8qn5sv0nqplf23w8dwj0b0wbibpr52lgqjc34r7"; depends=[httr purrr rjson stringr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; define = derive2 { name="define"; version="0.2.7"; sha256="0m5nk6shfak43zw68vzc9ncl0a3rrrkhc5ckhb5yhjllj6g5yigf"; depends=[encode Hmisc latexpdf SASxport spec]; }; @@ -5601,12 +5651,12 @@ in with self; { deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; demi = derive2 { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; }; - deming = derive2 { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; }; + deming = derive2 { name="deming"; version="1.2"; sha256="0lhc9asly988j38d6pdz54b8yxzigrchnz57inj2my33cfbzp300"; depends=[boot]; }; demoKde = derive2 { name="demoKde"; version="0.9-4"; sha256="0p4v808m42wbv8ibdfqzm43cbbg0yl452wnm1mzqq2n37z6yljkr"; depends=[]; }; demogR = derive2 { name="demogR"; version="0.5.0"; sha256="1y7pkf1m8fqjsvs0szyaqga2y7p3dvj0r85nz8nzqbmy4zrrv4w8"; depends=[]; }; demography = derive2 { name="demography"; version="1.20"; sha256="097k0chs8shm1r9ny6jdx2kp2shyxsivjw1n1rhb3bs0m0l3vm9r"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; - dendextend = derive2 { name="dendextend"; version="1.7.0"; sha256="1krvqadnnh53xx5ql7bwzxaif6a317jzbs1m00gnc6jnj03rfl5d"; depends=[fpc ggplot2 magrittr viridis whisker]; }; - dendroTools = derive2 { name="dendroTools"; version="0.0.7"; sha256="1wij1jwhbn0zs15zh2raa7xa1zfklchlyihv6baf7gkk5cmy87zg"; depends=[brnn dplyr ggplot2 gridExtra knitr magrittr MLmetrics oce plotly reshape reshape2 RWeka scales]; }; + dendextend = derive2 { name="dendextend"; version="1.8.0"; sha256="1virn3c232xwcq3d0hhkgjh5gpzl01s39iwii5gxcm9mnsxjzdrh"; depends=[fpc ggplot2 magrittr viridis whisker]; }; + dendroTools = derive2 { name="dendroTools"; version="0.0.9"; sha256="192bzpq7zxnknkn7g6w10lsqdj5qk0dq2z0dpdripi768y63cdim"; depends=[brnn dplyr ggplot2 gridExtra knitr magrittr MLmetrics oce plotly reshape reshape2 RWeka scales]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; dendsort = derive2 { name="dendsort"; version="0.3.3"; sha256="1m4qh79ppfvipmbi8m8vwq0hqmwwipbg5izihz5j6x8a4g5i6iym"; depends=[]; }; @@ -5625,62 +5675,62 @@ in with self; { depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.4"; sha256="1699r0h1ksgrlz9xafw2jnqfsc7xs0yaw97fc6dv3r11x6gxk00y"; depends=[]; }; dequer = derive2 { name="dequer"; version="2.0-1"; sha256="04kzlff8xa733qkkx0gacgig7d4l7yvgqmzva0mj8di12byh214p"; depends=[]; }; - derivmkts = derive2 { name="derivmkts"; version="0.2.2.1"; sha256="02q3vc70rvh83zqjaql46n4qkfmn0x2kfg9ikyps34vg7clsaqs3"; depends=[mnormt]; }; - desc = derive2 { name="desc"; version="1.1.1"; sha256="0k07qighac1xzmm8k988zi7i88a0yfvia3gk5hbz0fyvb2v9kzrj"; depends=[assertthat crayon R6 rprojroot]; }; + derivmkts = derive2 { name="derivmkts"; version="0.2.3"; sha256="0qw1xdn3mhz9kx4z352hdny2f46p3rx61hjk2ha5bibm8hnyzdpa"; depends=[mnormt testthat]; }; + desc = derive2 { name="desc"; version="1.2.0"; sha256="1s6s13fk6sxwcj8wzkwxl9vr33153xx11p5wi9avqx3rzkabavz6"; depends=[assertthat crayon R6 rprojroot]; }; descomponer = derive2 { name="descomponer"; version="1.4"; sha256="12zpkixclm6jmrgzvcy48c1mdqh9dgadzf9026wjyamphxkkjbip"; depends=[taRifx]; }; descr = derive2 { name="descr"; version="1.1.4"; sha256="05maviw8l8qhmy7p80gs3dlyy6pqk5k1686ny4xla4psj8mr7lbk"; depends=[xtable]; }; describer = derive2 { name="describer"; version="0.2.0"; sha256="1pjyihmn4gkaamixsc3qwynsc02pwv9bgn6s7z7acmmsybhhs6xn"; depends=[]; }; descriptr = derive2 { name="descriptr"; version="0.4.1"; sha256="1jpcfpidi49lyn02sl0hwsixzln9frrz03vrap1aq0phjcln39hh"; depends=[dplyr forcats ggplot2 magrittr rlang scales shiny tibble tidyr]; }; - desctable = derive2 { name="desctable"; version="0.1.1"; sha256="188pw8fjgm2g88nraagmxbnpv4gg89vm6mxm9w9vk88iq4hgbhjc"; depends=[dplyr DT htmltools pander purrr]; }; + desctable = derive2 { name="desctable"; version="0.1.2"; sha256="135v6gmrvmap71il13i5s0wsxddv8wyqb70ygl05jbmb3n4x61y7"; depends=[dplyr DT htmltools pander purrr]; }; deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; desiR = derive2 { name="desiR"; version="1.2.1"; sha256="0ghcv96bbwn74mka4dpf2lkpnlikjn3q6lx2sl8bbw77nriap0n6"; depends=[]; }; designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; designGLMM = derive2 { name="designGLMM"; version="0.1.0"; sha256="0ya246mqclkhg8cq6f5mzqn67qks22f3fribyjcvhrx395n0f21v"; depends=[]; }; - designmatch = derive2 { name="designmatch"; version="0.3.0"; sha256="1i8xdc6z01x59gvxdmi6qjqwqi8s9zzgfaxwd7xj49r4cl6h81pd"; depends=[lattice MASS Rglpk slam]; }; + designmatch = derive2 { name="designmatch"; version="0.3.1"; sha256="0px6iyqik4sfs25yybamvf3ay0vd6r75acj8hin76jl6l7fwk30f"; depends=[lattice MASS Rglpk slam]; }; desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; desplot = derive2 { name="desplot"; version="1.4"; sha256="0brmdp095zcwx7gncng1ls972kr67ldwiq081wyafn9jm9z461ix"; depends=[lattice reshape2]; }; detect = derive2 { name="detect"; version="0.4-1"; sha256="0hq3imp4w6bd8x4njcfrvcs5lf0vrfnags1zdph86d7hlrwfds62"; depends=[Formula Matrix pbapply]; }; detectRUNS = derive2 { name="detectRUNS"; version="0.9.5"; sha256="0w4pz7waaabgsb47xcmgiz8bzlrs2a83y3v6j7bqb5125y1wn8hw"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; }; detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; - detpack = derive2 { name="detpack"; version="1.1.0"; sha256="11l863yr15db0v6r3fmsk3hvvx6xiidw876009x9gp5fwrv7l1cv"; depends=[]; }; + detpack = derive2 { name="detpack"; version="1.1.1"; sha256="0q7c01bjrvrlbrhb8vhkjw2f43jp46ny3jdyay0j760cfdaqb5zk"; depends=[]; }; detrendeR = derive2 { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; - detrendr = derive2 { name="detrendr"; version="0.5.0"; sha256="0fmyssnwqqi36lklyv7dx9rv37ca8x0iq8nisx9q831yqxvd4lhm"; depends=[autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr plyr purrr Rcpp RcppParallel rlang stringr]; }; - detzrcr = derive2 { name="detzrcr"; version="0.2.2"; sha256="1bv4l4aharp3gjj9ldri7ip3bfzhq57kkmihmlzdbvnk8ajdggwy"; depends=[ggplot2 MASS shiny]; }; - devEMF = derive2 { name="devEMF"; version="3.6"; sha256="1n5i68f1j3d5yp0p0845zsvr4xhjrvj610wsb5rrlf90jwnarsx2"; depends=[]; }; + detrendr = derive2 { name="detrendr"; version="0.5.1"; sha256="0xcr6nk4fzcwf2k3js2619dyw9if0453cwfdna4fcjqp7pifq30a"; depends=[autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr plyr purrr Rcpp RcppParallel rlang stringr]; }; + detzrcr = derive2 { name="detzrcr"; version="0.2.3"; sha256="09a8x7zphsk06n64qqbh840vrp89sza9vfnz08il6jdy77j02974"; depends=[ggplot2 MASS shiny]; }; + devEMF = derive2 { name="devEMF"; version="3.6-1"; sha256="0lhf11bdgizhm2im13d0mc0ca834kg2cyabz92jp4mmhjvglrgf3"; depends=[]; }; devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; }; - devRate = derive2 { name="devRate"; version="0.1.6"; sha256="0wm6nqnr76azpwg00cspi4n8r4w5qfkvm5qqp0kshv701pnbsjbp"; depends=[]; }; - devtools = derive2 { name="devtools"; version="1.13.5"; sha256="1x3wsk7dh3yakii61kbfvafx9yz66h40ixiwfkf03dnp2n24hngs"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; }; - dexter = derive2 { name="dexter"; version="0.6.0"; sha256="1qz4j33y6n115gijxs1jg5712g8cmsv7406cx6bsm2zswvv7ra22"; depends=[colorspace DBI dbplyr dplyr DT fastmatch purrr RColorBrewer rlang rprintf RSQLite shiny shinyBS shinydashboard tibble tidyr]; }; + devRate = derive2 { name="devRate"; version="0.1.7"; sha256="1vmq467a60fz45fwdp0qs51fzdrdyj61vvdlk82046akzs8mvjvy"; depends=[]; }; + devtools = derive2 { name="devtools"; version="1.13.6"; sha256="1d9n49djydywfyp9w3njgxs5lag4ac7719wmxy1lkgcmn3l9sx5r"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; }; + dexter = derive2 { name="dexter"; version="0.8.0"; sha256="1lnhgy3ji6qa9qw0hdv4r8m4igcsasg0fx1kkz8lr80hxdg98zc3"; depends=[colorspace DBI dbplyr dplyr DT fastmatch purrr RColorBrewer rlang rprintf RSQLite shiny shinyBS shinydashboard tibble tidyr]; }; + dextergui = derive2 { name="dextergui"; version="0.1.3"; sha256="0k0dvsb5vvbhw2x57kgsifpiv9jrglapxzillj0nglg8i71wwypg"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets igraph jsonlite networkD3 RColorBrewer RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; df2json = derive2 { name="df2json"; version="0.0.2"; sha256="10m7xn7rm4aql1bzpckjcx5kvdw44m1pxgzqkgkd40lzqb1cwk18"; depends=[rjson]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; - dfcomb = derive2 { name="dfcomb"; version="2.4-2"; sha256="163sc18ka4wkf208ml7ghjsn43b3mbyf9zm4id563az6ckkzw45p"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; + dfcomb = derive2 { name="dfcomb"; version="2.5-0"; sha256="16wa7shc5rw8sax0x94i0lvg1h4wnq51mqdvsc5z8a5ki84jxlra"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfcrm = derive2 { name="dfcrm"; version="0.2-2"; sha256="1kwgxfqnz2bcicyb27lp6bnvrj30lqjpn5fg7kaqshgkj53g0s4f"; depends=[]; }; dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; }; dfmeta = derive2 { name="dfmeta"; version="1.0.0"; sha256="0ca48adfhaxac33jmxbynlyg3ak9l5mmjhlr69n4hnz6325gn9vb"; depends=[data_table ggplot2 lme4 plyr]; }; - dfmta = derive2 { name="dfmta"; version="1.6-2"; sha256="0icpgsxhzd9y0d3xv82cy807wylxck7zn31g0b3nv0nq3jxy04jk"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; + dfmta = derive2 { name="dfmta"; version="1.7-0"; sha256="0ci5faqkrpqkqkl0hrx9j78cid3cr1bs5mlkw4xargf3n4lfgk5j"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfoptim = derive2 { name="dfoptim"; version="2018.2-1"; sha256="1gya0sx8ajy04kscds06d6m9prxdwr1dmyfc6awsm6r1jwbibzb3"; depends=[]; }; dfped = derive2 { name="dfped"; version="1.1"; sha256="11ffsah14igba276m9d3cla0kgb3isizm5d7j1iqcd0wq23il7hq"; depends=[ggplot2 rstan]; }; dfphase1 = derive2 { name="dfphase1"; version="1.1.1"; sha256="0bk4bl5lqd7m4mzk6kg71fmh918wcy85zghr3lyayxlk30fl4ppc"; depends=[lattice Rcpp robustbase]; }; dfpk = derive2 { name="dfpk"; version="3.4.1"; sha256="1nmn5ir20wx3qvcf9rvnwnni5kqbn8adhc2354fb5gcvbnxlc7mc"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; }; dga = derive2 { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; }; dggridR = derive2 { name="dggridR"; version="2.0.3"; sha256="1gdwxrl5c5mprfk7rx5mk8davi4mmg1crccxaaipnbnsilg9j9vh"; depends=[dplyr ggplot2 Rcpp rgdal sp]; }; - dglars = derive2 { name="dglars"; version="2.0.0"; sha256="0nhljv02cfsna4d220nhla4fs84hr30qs9j32mml0brnmazyjj0n"; depends=[Matrix]; }; + dglars = derive2 { name="dglars"; version="2.0.1"; sha256="18iypbvk805xh0ybwawwvswsp086q2kjj2cmk1yhlq810260j686"; depends=[Matrix]; }; dglm = derive2 { name="dglm"; version="1.8.3"; sha256="0vj4vddqcrjzgqsi6zsxm22gj5pa5dm50wcxip4vi8kbwxaahnaj"; depends=[statmod]; }; dgmb = derive2 { name="dgmb"; version="1.2"; sha256="1r5md917wipx78n63x87fpvsc3h87c68cpacrrs9dhss199p1a5k"; depends=[abind MASS]; }; dgo = derive2 { name="dgo"; version="0.2.14"; sha256="0pizzyqgnng3g5g9q2qa5wcwfdl94rz69ah071qx01k03fzayg86"; depends=[assertthat data_table dgodata ggplot2 lubridate R6 rstan survey]; }; dgodata = derive2 { name="dgodata"; version="0.0.2"; sha256="03cyiig8pn7fdkrkrd29cwy5g63bp57bpl9jmdxfi03smngzbz0m"; depends=[]; }; dgof = derive2 { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; }; dhga = derive2 { name="dhga"; version="0.1"; sha256="1n48irj53g3kn451ak5ly50wxdn7qmzi2kib8clsvcx2n7mvpgcm"; depends=[VennDiagram]; }; - dhglm = derive2 { name="dhglm"; version="1.7"; sha256="09wasgvjw0xc9k68m6a8lx372p2hywk4j6ikr9wjjjfl6f17j1cw"; depends=[boot MASS Matrix numDeriv]; }; di = derive2 { name="di"; version="1.1.4"; sha256="1w2gjhyi410z98d8wnhbd69jxm69nz4pmnr4fb09i70a90f53s25"; depends=[scales]; }; diagis = derive2 { name="diagis"; version="0.1.3-1"; sha256="1cagcr5znhrg4fp96d79ly0z7bs3hhh3zfspclyfc88p2p3qsd96"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; diagmeta = derive2 { name="diagmeta"; version="0.2-0"; sha256="1qdpsn0c4g459p8p90p2a9fghiwjqqmmanz3zsa5a3lv7zxmk496"; depends=[lme4 meta]; }; diagonals = derive2 { name="diagonals"; version="0.4.0"; sha256="03n6lm0hkgylswgj1qlgrjigm7basl5frip99mxx19mvaqa3bhqy"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.4"; sha256="0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw"; depends=[shape]; }; - diaplt = derive2 { name="diaplt"; version="1.2.1"; sha256="0pya6rqzsvc5nd3smhydvabarglc4nn04q605vbllmbhq9rv00pa"; depends=[]; }; + diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; }; dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; - diceR = derive2 { name="diceR"; version="0.4.0"; sha256="1pxkwrbm69b97jia7nc18sprvxqxwwvvvzmxh147wgpqlmgqq47m"; depends=[abind apcluster assertthat blockcluster caret class cli clue cluster clusterCrit clValid dbscan dplyr e1071 flux ggplot2 gplots Hmisc infotheo kernlab klaR kohonen largeVis magrittr mclust NNLM pheatmap progress purrr quantable RankAggreg RColorBrewer Rcpp Rtsne sigclust stringr tibble tidyr]; }; + diceR = derive2 { name="diceR"; version="0.5.1"; sha256="0r3sj6qkkj6yqz21jcbjylqsr8n6yhghix2568gffckcijzgppar"; depends=[abind apcluster assertthat blockcluster caret class cli clue cluster clusterCrit clValid dbscan dplyr e1071 flux ggplot2 gplots Hmisc infotheo kernlab klaR kohonen magrittr mclust NMF progress purrr quantable RankAggreg RColorBrewer Rcpp Rtsne sigclust stringr tibble tidyr]; }; dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; }; dicionariosIBGE = derive2 { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; }; did = derive2 { name="did"; version="1.0.0"; sha256="0fgwassb8m92iij78f045fl8441f1x9dhf4hnc93wl16yv5hh7g7"; depends=[BMisc formula_tools ggplot2 gridExtra knitr MASS pbapply]; }; @@ -5688,17 +5738,19 @@ in with self; { dief = derive2 { name="dief"; version="1.1"; sha256="0x3dwlfi130wmbsmm8vf66qxqn001b07yaiq6mp1s707dnl131mc"; depends=[flux fmsb ggplot2 plyr]; }; dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; - difNLR = derive2 { name="difNLR"; version="1.2.1"; sha256="102b6hczmvm2pn0ld1pmqjc1pyvbgq1zk1whrgvai35c6qba40r2"; depends=[CTT ggplot2 msm nnet reshape2]; }; - difR = derive2 { name="difR"; version="4.7"; sha256="17i8l4z7dw8nfr4b5pc72l1qm7byjcflh58kasafx9kxyvfgz258"; depends=[lme4 ltm]; }; + difNLR = derive2 { name="difNLR"; version="1.2.2"; sha256="0d9454vy0wdl60alvwyw4y8aqwhggkr9ffq4l1mxhwfvj8ypwch0"; depends=[CTT ggplot2 msm nnet reshape2]; }; + difR = derive2 { name="difR"; version="5.0"; sha256="0k0vw5l3pig514ngpvf0rwhwxc316ws352fgw49c3c95ydsz6wd8"; depends=[deltaPlotR lme4 ltm mirt]; }; difconet = derive2 { name="difconet"; version="1.0-4"; sha256="0cjadi4mnpfmy18vyp0dw55mnhs0zddf51w59gvq6gszk145z3bq"; depends=[data_table gplots mvtnorm stringr]; }; diffEq = derive2 { name="diffEq"; version="1.0-1"; sha256="1xmb19hs0x913g45szmm26xx5xp85v182wqf0lnl4raxaf47yhkm"; depends=[bvpSolve deSolve deTestSet ReacTran rootSolve shape]; }; diffIRT = derive2 { name="diffIRT"; version="1.5"; sha256="0kip6wz9l9q80qsqwf32pwz7d9vqin6dgfwf0nxlrlzf8xjsxgim"; depends=[statmod]; }; diffMeanVar = derive2 { name="diffMeanVar"; version="0.0.6"; sha256="0zivbd22hp0biy4vnjh21f4djfg5bl9az0wlhn47rk7fw65rgipb"; depends=[Biobase lawstat MASS methylumi missMethyl]; }; diffMeshGP = derive2 { name="diffMeshGP"; version="0.1.0"; sha256="1dc37hxh3fi27gw11kij57j78p87bza77s82niagdv6dqhldj5a4"; depends=[]; }; diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; }; + diffdf = derive2 { name="diffdf"; version="1.0.0"; sha256="1qb27pkjs9bapwgqlb1kablcz54hs4cg0mmf2sisl1b8q4j68q96"; depends=[tibble]; }; diffeR = derive2 { name="diffeR"; version="0.0-4"; sha256="08g21h3yq8rm2i6ah364nfadg7hnghc21jnpi5aqwzqyd2v93b67"; depends=[ggplot2 raster rgdal]; }; - diffee = derive2 { name="diffee"; version="1.0.0"; sha256="0phkiq14qajif1nymfymwnhkdrlcx4xnk9mnyf5wgrkgywssgz21"; depends=[igraph]; }; - diffobj = derive2 { name="diffobj"; version="0.1.9"; sha256="1adqn472qbwrfb8m2iy3sfvj2n8g3d4h6xc3hqxpbv03yyfia2c2"; depends=[crayon]; }; + diffee = derive2 { name="diffee"; version="1.1.0"; sha256="01lb1prz70mxgymhhsvx48kbfy69xyyaabsmfhf28af9wfb89662"; depends=[igraph pcaPP]; }; + diffeqr = derive2 { name="diffeqr"; version="0.1.1"; sha256="1zvjl2i38nyhk63bncqc5cva1m40sm692w7a36qc455s2jnskfh8"; depends=[JuliaCall stringr]; }; + diffobj = derive2 { name="diffobj"; version="0.1.10"; sha256="1y3fijswy9fw7q9xdv8cz9vm279av2hlzwbq8fc8lffwrbfl1zs1"; depends=[crayon]; }; diffpriv = derive2 { name="diffpriv"; version="0.4.2"; sha256="12q2v93369bshid83rsy1csbr9ay6rfpd8zdxm12zi7py3f9sjs8"; depends=[gsl]; }; diffr = derive2 { name="diffr"; version="0.1"; sha256="0ydwnpyzirynffsnvip667y0jqzy7yfqlfpqhb38xvmd9rmwfbp8"; depends=[htmlwidgets]; }; diffractometry = derive2 { name="diffractometry"; version="0.1-10"; sha256="09mkqg6avky26c2dsnhpcmby76hfqg0pwmnjhkbp4px2k6c9inrc"; depends=[]; }; @@ -5706,7 +5758,7 @@ in with self; { diffrprojectswidget = derive2 { name="diffrprojectswidget"; version="0.1.5"; sha256="1h69mc1wayi80vz4b9cqydylf4kp9mxsigv05r0f903pqakdrzcw"; depends=[diffrprojects dplyr hellno htmlwidgets jsonlite magrittr tidyr]; }; diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; }; diffusionMap = derive2 { name="diffusionMap"; version="1.1-0"; sha256="1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3"; depends=[igraph Matrix scatterplot3d]; }; - diffusr = derive2 { name="diffusr"; version="0.1.2"; sha256="1rvfbs757rngxz7z3kq82nwls26qx35gkjiv1laay06kjs9qrgy5"; depends=[igraph Rcpp RcppEigen]; }; + diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; }; digest = derive2 { name="digest"; version="0.6.15"; sha256="1ia4ak956gnn0f5aqhwgam6g9z6f1y57zz8jv45jc8h79yxp8bl8"; depends=[]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; @@ -5714,16 +5766,18 @@ in with self; { dimRed = derive2 { name="dimRed"; version="0.1.0"; sha256="0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v"; depends=[DRR]; }; dina = derive2 { name="dina"; version="1.0.2"; sha256="1dgjny7ik2g15zbi3ywl0xbab6vnv5qkxfrb4x79w7lic5m90ldc"; depends=[Rcpp RcppArmadillo]; }; dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; + dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; }; diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; directPA = derive2 { name="directPA"; version="1.3"; sha256="0hcs56y69gdkfyk2xl0vxh01c19s6z1lfv02g056wxr24qfsx08c"; depends=[calibrate rgl]; }; - directlabels = derive2 { name="directlabels"; version="2017.03.31"; sha256="01ahw0c56mnzwl611s8hnghicww4c4dgf5v2wv6bl1s1pramw9pr"; depends=[quadprog]; }; + directlabels = derive2 { name="directlabels"; version="2018.05.22"; sha256="0xcpc56ssb9430b0xcdhayk3qaak2qcakyss2pz14y5w2027hblv"; depends=[quadprog]; }; dirichletprocess = derive2 { name="dirichletprocess"; version="0.2.1"; sha256="0ip7mcjddqg7z9hqrvbxixvkqp9j4d92zgpk6hn6acd4fxhb17r6"; depends=[ggplot2 gtools mvtnorm]; }; dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; discSurv = derive2 { name="discSurv"; version="1.3.1"; sha256="0vq3g42xy97ksgsghhz232spkbkr2zs8i9nm7xwdabysi9fgqdsv"; depends=[functional mgcv mvtnorm]; }; discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; }; disclap = derive2 { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; - disclapmix = derive2 { name="disclapmix"; version="1.6.2"; sha256="01pn8hy3xbf1b1fbbsd4n2hv7gs97zalgq858xsrr4a0nqrvxmn5"; depends=[cluster disclap Rcpp]; }; + disclapmix = derive2 { name="disclapmix"; version="1.7"; sha256="11qkk5bl5x3axyfdzm1hw522g643mmvk5qg7g3sc3licfvsn32i1"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; + disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; }; discord = derive2 { name="discord"; version="0.1"; sha256="0nrjpl7l9lzkn92fwzaj3vh8zv2b6706gnh5c4zalkld0xac3c23"; depends=[dplyr]; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; @@ -5733,20 +5787,19 @@ in with self; { diseasemapping = derive2 { name="diseasemapping"; version="1.4.2"; sha256="065ndvpx3q9ycxfjl1f2iy3s23d7qf27s1qz31ppx0n929jynn6n"; depends=[sp]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; dismo = derive2 { name="dismo"; version="1.1-4"; sha256="1j4pzbyvn8msi3k2y79nc6pqlrald46168ibznjwrr6rdiqhy4gj"; depends=[raster sp]; }; - disp2D = derive2 { name="disp2D"; version="1.0"; sha256="0q5bds2r1mqzcwmnj61dmwqv6b0s0scq5h3nim47q3wp0n4gbslz"; depends=[geometry]; }; dispRity = derive2 { name="dispRity"; version="1.0.3"; sha256="1swix45fcr0hn21pvy2dwsnbr60bvsdjk8vwh432p0s69c372m3l"; depends=[ade4 ape geiger geometry geoscale paleotree phangorn phyclust vegan]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; }; dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; }; disposables = derive2 { name="disposables"; version="1.0.3"; sha256="0q5wacjclspn2fh7z1pg2l67ll51n75wck5h2fdq2vxy3qn3vwis"; depends=[]; }; dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; - dissever = derive2 { name="dissever"; version="0.2-2"; sha256="0s4g84lq15i00vpaafwmcbspdqy23cbj2fbyfnq60mzllyzgs0n2"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; + dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; distance_sample_size = derive2 { name="distance.sample.size"; version="0.0"; sha256="0hlf3kp34rg1gnkxp4k3rnv0shv4fpgb0rhx3a6x5692lhyigbcs"; depends=[MASS]; }; distances = derive2 { name="distances"; version="0.1.2"; sha256="17872h4jw6cgdk40vczjlygnays2v0wdh64mz5isk7zkvqs0x1ld"; depends=[]; }; distcomp = derive2 { name="distcomp"; version="1.0-1"; sha256="0f69bxw52ai39dmkmfvrs0lbibcgmv6n849xa9xgd2jm5mvbc58f"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; distcrete = derive2 { name="distcrete"; version="1.0.3"; sha256="0sa6z2mpmk51ig1r7bmpbyv2jd8z6z7mixki2vlq1kybg8cx3wmi"; depends=[]; }; distdrawr = derive2 { name="distdrawr"; version="0.1.3"; sha256="1c8wznfml8k5gwyanfg7rqr22a96xx8rgm7f4z3bv5gsgsbps49y"; depends=[]; }; - distfree_cr = derive2 { name="distfree.cr"; version="1.0"; sha256="13y714l6b3kkpp75fdrsbdclgj1vw1xsvbj9pxi4lkwf11wwmrqr"; depends=[]; }; + distfree_cr = derive2 { name="distfree.cr"; version="1.5.1"; sha256="0h7cywxnasxmqnl9f2f9wp4viwvv72hjx2drr78prqy3nn3lvqwx"; depends=[]; }; distillery = derive2 { name="distillery"; version="1.0-4"; sha256="1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"; depends=[]; }; distory = derive2 { name="distory"; version="1.4.3"; sha256="1mszk8fv1z46d7y1q37mhq9b5yk39w2i9rq6mgdf03afdslrmrip"; depends=[ape]; }; distr = derive2 { name="distr"; version="2.6.2"; sha256="1x118v7ycw33mkwy9frw38yn7a6ihghpssz6r2nj5766ab93i89s"; depends=[MASS sfsmisc startupmsg SweaveListingUtils]; }; @@ -5765,53 +5818,54 @@ in with self; { diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; }; diversitree = derive2 { name="diversitree"; version="0.9-10"; sha256="0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"; depends=[ape deSolve Rcpp subplex]; }; - divest = derive2 { name="divest"; version="0.5.0"; sha256="07qv8zjhajyjc7yhm3kk33xj806rxv92810d52gvk4iwgmgczl78"; depends=[Rcpp RNifti]; }; + divest = derive2 { name="divest"; version="0.6.0"; sha256="0j7glxg2sp1x11mlfrl0fciqp9w6jwf2j7s1sxchaw1b2rm0nklm"; depends=[Rcpp RNifti]; }; divo = derive2 { name="divo"; version="1.0.0"; sha256="0xy4yxvx2grskdzb5z73mhgrq0nfhdkm2hxahdns7pb1fgajxyjx"; depends=[cluster]; }; dixon = derive2 { name="dixon"; version="0.0-6"; sha256="1prvr16a9n7qyaznir2bl7mg6nlvbdv9pk75p3xipzjg36hwyam8"; depends=[spatstat splancs]; }; dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; - dkanr = derive2 { name="dkanr"; version="0.1.0"; sha256="05sw0rdfl5fr9v67lixbk2jmsxi2gdbyb6bzkf80ynp1y1izxyzq"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; - dlib = derive2 { name="dlib"; version="1.0"; sha256="0d6p28r86jq7gwqh3njnsfgl6mmgx7famqx7p1xmra91cdlp3hqj"; depends=[Rcpp]; }; - dlm = derive2 { name="dlm"; version="1.1-4"; sha256="0hyphl90bqc16j7in750pmiyq28hmc46kxgv7gj17c8xl9c9xqxm"; depends=[]; }; + dkanr = derive2 { name="dkanr"; version="0.1.1"; sha256="15vvfvhs715aczb0g1prgvynzx0xcmqvq7ancqcjw89al40zaiyc"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; + dlib = derive2 { name="dlib"; version="1.0.3"; sha256="1is8j1gwf22n7yixg40rb6p4mrnbzijwfjl6vsniq8qkyy7z8k32"; depends=[Rcpp]; }; + dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; }; dlmap = derive2 { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[ibdreg mgcv nlme qtl wgaim]; }; - dlmodeler = derive2 { name="dlmodeler"; version="1.4-2"; sha256="06gqvk2wrzz4kpsh4vyrbqwmxirsvg78qj7clvcxdac0sfqn4gl7"; depends=[KFAS]; }; dlnm = derive2 { name="dlnm"; version="2.3.4"; sha256="08k9x29iakgnzf4zbj6bgv6i4812mhbgraxm468wvv8ia574dm1m"; depends=[mgcv nlme tsModel]; }; - dlsem = derive2 { name="dlsem"; version="2.2"; sha256="05ph3zqh2300b1qm6awwixiyg33rjym1m3l943cvgc036axa7smk"; depends=[graph gRbase Rgraphviz]; }; + dlookr = derive2 { name="dlookr"; version="0.3.0"; sha256="00yxv2wfprqpsjd4c9q330agy1q3iqi4lnqk8xz62bnqizb0v3hm"; depends=[classInt corrplot DMwR dplyr ggplot2 gridExtra kableExtra knitr magrittr mice moments prettydoc purrr randomForest RcmdrMisc RColorBrewer rlang rmarkdown rpart smbinning tibble tidyr tidyselect tinytex xtable]; }; + dlsem = derive2 { name="dlsem"; version="2.3"; sha256="1v7p6d2ylpvq69sbgicznmzsfsv08nivgj6dv6lyw7059anilgkn"; depends=[graph gRbase Rgraphviz]; }; dlstats = derive2 { name="dlstats"; version="0.1.0"; sha256="0s92rdpw3m534wgjaic4srsp9i1pa3ibfmr4h7p3ly51zhza6l5h"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; dma = derive2 { name="dma"; version="1.3-1"; sha256="0azask61cmkklly32nbpw9rq03v0g976i7shhvawxj20dh4h1jz9"; depends=[MASS mnormt]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; - dmm = derive2 { name="dmm"; version="2.1-3"; sha256="0hxd4k721imicnc97h319gxs6n4plyl9y9sr5hc7pwas543dm7k3"; depends=[MASS Matrix nadiv pls robustbase]; }; + dmm = derive2 { name="dmm"; version="2.1-4"; sha256="0qwgsv128gqapnc2xi3yas51l9d1gylgs6ww0gc3d8mavlhkz4b1"; depends=[MASS Matrix nadiv pls robustbase]; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; }; dmutate = derive2 { name="dmutate"; version="0.1.2"; sha256="06gr49j5jz6ns1zydwsqysgkigi2sbm4hdd2jbb82f05rd9spyf3"; depends=[dplyr MASS]; }; dna = derive2 { name="dna"; version="1.1-1"; sha256="0gw70h1j67h401hdvd38d6jz71x1a6xlz6ziba6961zy6m3k5xbm"; depends=[]; }; dnet = derive2 { name="dnet"; version="1.1.3"; sha256="1av4kbcbhpj1ivz6ln26p80z5fd170971mrcy59zm67h6kdi56az"; depends=[graph igraph Matrix Rgraphviz supraHex]; }; - dng = derive2 { name="dng"; version="0.1.1"; sha256="04r06k6mmif7kbpham52dq2zv5rijjnsdc3sgxz6kbh5mqdn6jfq"; depends=[Rcpp]; }; + dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnr = derive2 { name="dnr"; version="0.3.2"; sha256="0f5xahd86x196mg7c9zrhxj7c8cg7mrnd4nzyr02xcym6cff6vqm"; depends=[arm ergm glmnet igraph network sna]; }; doBy = derive2 { name="doBy"; version="4.6-1"; sha256="1y02awzid23bxz8hx6j8pxd6i7jaq8pdw3k60rag8y6m69incrw5"; depends=[dplyr magrittr MASS Matrix plyr]; }; doFuture = derive2 { name="doFuture"; version="0.6.0"; sha256="04pvs2h1ibdbl6cph30rvdn5vzj9afllvh8f0iy64pgy83vls790"; depends=[foreach future iterators]; }; doMC = derive2 { name="doMC"; version="1.3.5"; sha256="1vfrykvfvsyq12mypd266867ml1dcwc3rj5k9c3wrn5bddcm88kr"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.11"; sha256="0sppgxk3d8mfsrb3cjdyn0mv0s4i7pcy8g8c3cjzbr6k8vmx5jsc"; depends=[foreach iterators]; }; - doRNG = derive2 { name="doRNG"; version="1.6.6"; sha256="0xnqrc74qncg5iv4cvq0vh3r1sd407wvzx0hfpy8j2rcqy12574k"; depends=[foreach iterators pkgmaker rngtools]; }; + doRNG = derive2 { name="doRNG"; version="1.7.1"; sha256="1sb75aqkliprglfxc4x4wds6alqgzhvl2n812g1d32a88ra3slr7"; depends=[foreach iterators pkgmaker rngtools]; }; doRedis = derive2 { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9bf5wbfm6y9gi233s8qgsk4dnr84n3nizx"; depends=[foreach iterators rredis]; }; doSNOW = derive2 { name="doSNOW"; version="1.0.16"; sha256="13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n"; depends=[foreach iterators snow]; }; - dobson = derive2 { name="dobson"; version="0.2"; sha256="1fyf4dyzpg6hqdvr8n4ncs4dny8mg23nxbd49jd3mrlajszzg0vp"; depends=[]; }; + dobson = derive2 { name="dobson"; version="0.3"; sha256="1vhakkg0276vq0haww5cmm8dbp20bc4874mihqasxkfylqpp6hz2"; depends=[]; }; docker = derive2 { name="docker"; version="0.0.2"; sha256="00zq4zmv2y6q069q92dn8db2bj96kfy7pv2s58q21dxkp1c4s6qg"; depends=[reticulate]; }; dockerfiler = derive2 { name="dockerfiler"; version="0.1.1"; sha256="17r8az17vkj46cljp0pa15xh9x2p5w85csm2hickfk2lyg2pbjnx"; depends=[attempt glue R6]; }; docopt = derive2 { name="docopt"; version="0.4.5"; sha256="1pwng6018ls0hk785bs8yjwpzsqr2pcvzgpavqd9rw19n5lvzhxn"; depends=[stringr]; }; - docopulae = derive2 { name="docopulae"; version="0.3.3"; sha256="13889sj509gbl9zs7jqdvslp6sc81jv54cbqh1wpp834jp5s1q3x"; depends=[]; }; + docopulae = derive2 { name="docopulae"; version="0.3.5"; sha256="0k69ca3bjjr9q9v43ds3malwxnldizx0lr62286n0h2idqn63kfa"; depends=[]; }; docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; document = derive2 { name="document"; version="3.0.1"; sha256="1pmms1mrldjqsd2zrmpyxz86xykgq1ld4l4gv9gd1ycd7r8v0f8p"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; - docxtools = derive2 { name="docxtools"; version="0.1.1"; sha256="1mlgl9105mifzdgf57spgr2rr5740ghr5afmlskxn6ind7jfka70"; depends=[dplyr ggplot2 pander stringr tidyr]; }; + docxtools = derive2 { name="docxtools"; version="0.1.3"; sha256="0c8harmlil1cqg74a0n2b544gghdl71y0qrcx34yk6ky2f8bl4s3"; depends=[dplyr ggplot2 lubridate magrittr pander purrr rlang stringr tidyr]; }; docxtractr = derive2 { name="docxtractr"; version="0.2.0"; sha256="197j57ab8x960b1yfq6xp8fwmq51xs04nf0cb16r161h4bcmgs2j"; depends=[dplyr purrr tibble xml2]; }; dodgr = derive2 { name="dodgr"; version="0.0.3"; sha256="161qy9iyszpb44v26zn6w4d7c9bw8pg7vwgqcba0k0xc5dnr2wjc"; depends=[igraph magrittr osmdata rbenchmark Rcpp sp]; }; + doex = derive2 { name="doex"; version="1.0.0"; sha256="1d70pb0wxc47z401ya2awjpx0rgipicxgbvkhwinx2mg0jpa8kki"; depends=[]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; dosresmeta = derive2 { name="dosresmeta"; version="2.0.1"; sha256="0qdalzdk7q4wx3vl5f3i64m8cb7vhi4pqzghar32j0a7l6gla04z"; depends=[mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; dotCall64 = derive2 { name="dotCall64"; version="0.9-5.2"; sha256="1jw0kyw95nivjimh25ri9sigqwlvk12kd45ydsh1yggigzc0k23k"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; }; - dotwhisker = derive2 { name="dotwhisker"; version="0.4.1"; sha256="1wmb9c0c6r0f36cks72y2jp1iwi6hxjqchq4z76vlcdxq09gmq3g"; depends=[broom dplyr ggplot2 ggstance gtable purrr rlang stringr]; }; + dotwhisker = derive2 { name="dotwhisker"; version="0.5.0"; sha256="034pvkc59jdjl27wirgb2cv84ajw5y2if20njzzp87nd4f9bb6br"; depends=[broom dplyr ggplot2 ggstance gtable purrr rlang stringr]; }; doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; downscale = derive2 { name="downscale"; version="2.0-3"; sha256="0jvzvmwhpdr7ygcxky4yl1ldb843hrmnzhmnvl0694mmswwqsf8l"; depends=[cubature minpack_lm raster Rmpfr sp]; }; @@ -5820,70 +5874,72 @@ in with self; { dparser = derive2 { name="dparser"; version="0.1.8"; sha256="1yx425s3iq03j043g41pyfp3cgmajb4qh50zirhd0qpplzwy8xj5"; depends=[digest]; }; dpcR = derive2 { name="dpcR"; version="0.4"; sha256="02j7fhhfq7p2wfcnr7rdy65v6dcvdym3nfyps7717p7b429chchc"; depends=[binom chipPCR dgof e1071 evd multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; }; dpglasso = derive2 { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; - dplR = derive2 { name="dplR"; version="1.6.7"; sha256="0i4s4anklia0bnygqrkk35gnc972qfnvzr3sfzwz7jxghigw7k8l"; depends=[animation digest lattice Matrix matrixStats plyr png R_utils stringi stringr XML]; }; + dplR = derive2 { name="dplR"; version="1.6.8"; sha256="0rgdshkkvij177y7d432wx23ch6f54ns3w93a6fayb1pl936rh7f"; depends=[animation digest lattice Matrix matrixStats plyr png R_utils stringi stringr XML]; }; dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; - dplyr = derive2 { name="dplyr"; version="0.7.4"; sha256="1hm8ml7yaraag1ak6kvz2mxx6if568c759ix8a1n9d7va03wj7vv"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble]; }; - dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.2.0"; sha256="1flhsl4c1hws2ccrf81y4lybdz9dsbmws9zdpiry9h98h3rlaxp8"; depends=[bit64 cli crayon DBI dbplyr dplyr odbc purrr rstudioapi tidyverse]; }; + dplyr = derive2 { name="dplyr"; version="0.7.6"; sha256="0c43h13s5mr0fklikbbm89gs6z5n66rkjzdv6w3w6kl5af5wr2fl"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble tidyselect]; }; + dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.3.0"; sha256="1yvz1hbczqvvmgkhbvvwkjx56ljqsxry86qk9bn62rdzdvhhpwhx"; depends=[bit64 DBI dbplyr dplyr odbc rstudioapi]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpmixsim = derive2 { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[cluster oro_nifti]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; - dprep = derive2 { name="dprep"; version="3.0.2"; sha256="0iw1pqpqlv436wpwh1w832aqvy91zvxmbk2jdw7aczrb29wys2bj"; depends=[class e1071 FNN MASS nnet rgl rpart StatMatch]; }; dprint = derive2 { name="dprint"; version="0.0.4"; sha256="13bq6yjlp5p5rcsz684rqcigp42xnz3p5phnqmrhzm874gfzm8rj"; depends=[]; }; + dqrng = derive2 { name="dqrng"; version="0.0.4"; sha256="0qkpyr7gc3m704znfv011l19s8qsnq42rn8p43qsakvndfyqynbb"; depends=[BH Rcpp]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; dr4pl = derive2 { name="dr4pl"; version="1.1.1"; sha256="1wh7mdns9vxjkfphj2nqllh7q3k3lch5y0b4yzf3j4xrd0wyf2hm"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; }; drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; }; - drake = derive2 { name="drake"; version="5.1.2"; sha256="18f0mxbzz50dli3y4fzyh5qgk8ccxrvqy8a3xsc5xq4y0ilq8kvf"; depends=[bindr CodeDepends crayon digest dplyr evaluate formatR future future_apply igraph knitr lubridate magrittr pkgconfig plyr purrr R_utils R6 rlang rprojroot storr stringi testthat tibble tidyselect visNetwork withr]; }; + dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; }; + dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; }; + drake = derive2 { name="drake"; version="5.2.1"; sha256="004rxsxzxyc2738p92p4mk68p88pc5n0dynkffr2pmqk50n3wrq6"; depends=[bindr CodeDepends crayon digest dplyr evaluate formatR fs future future_apply igraph knitr lubridate magrittr pkgconfig purrr R_utils R6 rlang rprojroot storr stringi testthat tibble tidyselect txtq visNetwork withr]; }; drat = derive2 { name="drat"; version="0.1.4"; sha256="0vrpqf793vinx4v7jrbn910iplvpmrlwhdjqqzx8cl2k9hl43x08"; depends=[]; }; drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; drfit = derive2 { name="drfit"; version="0.7.1"; sha256="1k2chmhdwd78a5d1pxi3iskzfb4h1fxp51ji72qs73m3i6s2mqpz"; depends=[drc MASS qcc reshape2 RODBC]; }; drgee = derive2 { name="drgee"; version="1.1.6"; sha256="01404mqvkvndn5gybq8dgkfc1cy9wk94p7k7i64h47w3zbkcwsax"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; - driftR = derive2 { name="driftR"; version="1.0.0"; sha256="0mlhv22xmgiq4a680rk9d39gk2p1b5lrkvvmqjzmlynfy9f8bkj0"; depends=[dplyr ggplot2 glue magrittr readr rlang stringr tibble]; }; - drm = derive2 { name="drm"; version="0.5-8"; sha256="1p6ixd7hnv41gfmvan3rv9xzz1279hmrnvfrl6pxwzs9zcnbb53a"; depends=[]; }; + driftR = derive2 { name="driftR"; version="1.1.0"; sha256="0mvrmwfqg234kk5klhmw7vmf8i0g485xkx5nk73iam16fbzl9y5g"; depends=[dplyr glue janitor lubridate magrittr readr readxl rlang stringr tibble]; }; drmdel = derive2 { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; + droptest = derive2 { name="droptest"; version="0.1.1"; sha256="065cf0rc2jw83nypjcq3nj37kmdwbaq9yglrvcffy9jcdm804kp9"; depends=[data_table]; }; drsmooth = derive2 { name="drsmooth"; version="1.9.0"; sha256="1wgi961bvbsnq4bygxbpy4sy5fy34lrrkaaj0r2rxcahwa1sc38n"; depends=[boot car DTK lubridate mgcv multcomp pgirmess segmented]; }; - drtmle = derive2 { name="drtmle"; version="1.0.2"; sha256="02i75qj1l0zd518dmkv4qdbd6r8xqrxvsg6ahaxi6pwy00dvqnqm"; depends=[doFuture future future_batchtools np plyr SuperLearner]; }; + drtmle = derive2 { name="drtmle"; version="1.0.3"; sha256="1b2nlkmx7park79pkmnjnkckli89zh3klfamxkqndgd1s5p0aa11"; depends=[doFuture future future_apply future_batchtools np plyr SuperLearner]; }; + drugCombo = derive2 { name="drugCombo"; version="1.0.2"; sha256="0akb0lszqr9qci9aqwrahhhza1qzdai4w15drccjm399v0csqi0w"; depends=[BIGL Deriv ggplot2 minpack_lm nlme rgl]; }; ds = derive2 { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; }; dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; dse = derive2 { name="dse"; version="2015.12-1"; sha256="1976h57zallhzq43nshg77bsykcvkfwnasha1w59c44fjpl1gs9w"; depends=[setRNG tfplot tframe]; }; dslabs = derive2 { name="dslabs"; version="0.3.3"; sha256="1bh6n0s171n6r68fsizz2jryjlj0990bn4rbinl2ln8j17r8lgpf"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.1.5"; sha256="0qwz9rlgpgx0k28hca2m40ab0qad9rfp1gxswygchv7rcnl4f6ml"; depends=[ggplot2 Rcpp scales]; }; - dsm = derive2 { name="dsm"; version="2.2.15"; sha256="1b7ixbfq2xpgbc5hyhyzcr6nx4larl3qg1idccraiwrj3m2dr59h"; depends=[ggplot2 mgcv mrds nlme numDeriv statmod]; }; + dsm = derive2 { name="dsm"; version="2.2.16"; sha256="1glw3pwgar9qadjya615n5n10lg7xvclcnr3k9vn8y3fgid22f80"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmodels = derive2 { name="dsmodels"; version="1.1.0"; sha256="0gidxi4ph49mjm2hdf9flphfb9916al4cpdkiig504n7ms2sbpbg"; depends=[latex2exp pryr shape]; }; dsrTest = derive2 { name="dsrTest"; version="0.2.1"; sha256="1kljlfi7jf6fa8b5f3wxjsa9rlmzcp4qix3m2qyapz2lqd85mbb7"; depends=[asht exactci loglognorm]; }; - dst = derive2 { name="dst"; version="0.3"; sha256="1gdf4sjk2svywx2m6z22d383xppsm6dm108w93pcwfs8fpcdwxb9"; depends=[]; }; + dst = derive2 { name="dst"; version="1.0.0"; sha256="0xlrczyw0i3c5hnzflrlw463x9dlmv89m7xlq9xq3krxfsx3qv4z"; depends=[]; }; dtables = derive2 { name="dtables"; version="0.2.0"; sha256="0ikgip3p4b7q97b2dshlx0fq09xsk304gfk5prw4rk95w9wck3qs"; depends=[psych]; }; - dtangle = derive2 { name="dtangle"; version="0.1.0"; sha256="1i9wjg31ldhiyl01znzcalhwsi6yfqzxi1xdpivkzxhf25bp932r"; depends=[]; }; + dtangle = derive2 { name="dtangle"; version="0.3.0"; sha256="0jvn7g3d2wspdhiahmn88iv9cdh9h3qj15540j39vws5jhl1dgsb"; depends=[]; }; dti = derive2 { name="dti"; version="1.2-6.1"; sha256="1p88k7qkmas49niq618jhddc0h4mwh5gd267v6rlzzpmv5f98fkb"; depends=[adimpro awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; + dtp = derive2 { name="dtp"; version="0.1.0"; sha256="0qy8nrbq22bfbajkxq6blkq7583pc5mb392gmqb3c9daxmqn42vb"; depends=[Formula gtools plyr]; }; dtplyr = derive2 { name="dtplyr"; version="0.0.2"; sha256="1q75xnk52zfxnphj095dppcqdmk9v1n32069rffpnvr39nnik565"; depends=[data_table dplyr lazyeval]; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; - dtw = derive2 { name="dtw"; version="1.18-1"; sha256="1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr"; depends=[proxy]; }; - dtwSat = derive2 { name="dtwSat"; version="0.2.3"; sha256="10b0hs9kn5ljfv28iz62h966zb1pxsfrr6fx45d4427gr6fg8ncz"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales sp xtable zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="5.3.1"; sha256="0lm8y63gx096vdnza7mcqllfnl56vaz8dnrnm7f7jvwgmkqkj1xy"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel reshape2 RSpectra shiny shinyjs]; }; - dualScale = derive2 { name="dualScale"; version="0.9.1"; sha256="11hqxprai0s5id6wk4n2q174r1sqx9fzw3fscvqd2cgw8cjn1iwl"; depends=[ff lattice Matrix matrixcalc vcd]; }; + dtw = derive2 { name="dtw"; version="1.20-1"; sha256="1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"; depends=[proxy]; }; + dtwSat = derive2 { name="dtwSat"; version="0.2.4"; sha256="1yvl64z3dp4qyii4p8phbk1g1l10q9fbickj0xzzvg2q1xmjps91"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales snow sp xtable zoo]; }; + dtwclust = derive2 { name="dtwclust"; version="5.4.1"; sha256="17q48hv2zix8jz7znb5pvwq4mrixdyh1rpzmyvj8g0sz62q0h2xc"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel reshape2 RSpectra shiny shinyjs]; }; dub = derive2 { name="dub"; version="0.1.0"; sha256="0sdk8sppjcfx2bsngpngm2446warsnipzzw4yz5z4jpickp52ay0"; depends=[]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; dunn_test = derive2 { name="dunn.test"; version="1.3.5"; sha256="0lqwvyl3pyygfc73nf81gzw3zl3w43r7ki0yw2dgrzhkpb2iji4a"; depends=[]; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; }; - dvfBm = derive2 { name="dvfBm"; version="1.0"; sha256="0gx11dxkbnh759ysd1lxdarlddgr3l5gwd5b0klwvwsgck6jv529"; depends=[wmtsa]; }; dvmisc = derive2 { name="dvmisc"; version="1.1.2"; sha256="1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"; depends=[MASS rbenchmark Rcpp]; }; - dvn = derive2 { name="dvn"; version="0.3.5"; sha256="04di2gpdacivvd9bi96w6145k280s8blavdhi1w3rw4c7sc3hag2"; depends=[RCurl XML]; }; dwapi = derive2 { name="dwapi"; version="0.1.3"; sha256="149v1yjnrdbqjg7cpnanm1jv1dcpzqy264qk5dx8wvw9kdc5h3b8"; depends=[httr jsonlite readr rjson xml2]; }; dyads = derive2 { name="dyads"; version="1.1"; sha256="0jlyg4bz3zp4g5ig0swwi72bxaj85wll05h6vishnvmnprpdc96n"; depends=[MASS mvnfast]; }; - dygraphs = derive2 { name="dygraphs"; version="1.1.1.4"; sha256="0vwg9q7xrwxkm92d55ik9gdky42bj3jlh6fi4jzwyl5nfdswklb9"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; + dygraphs = derive2 { name="dygraphs"; version="1.1.1.5"; sha256="0bfpna7gijnfvf40fm4dhb63lf2x6n91d0ym3w936s6xiyc3ah17"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; dyn = derive2 { name="dyn"; version="0.2-9.6"; sha256="16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"; depends=[zoo]; }; dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.5"; sha256="0fvyn33mzjcc3sis05phc6412y25m406il2wzdfw8caa8dafj0yw"; depends=[tcltk2 tkrplot]; }; dynCorr = derive2 { name="dynCorr"; version="1.1.0"; sha256="0l5k764j1zhsqpgp0ndihah63hsk3zv9hviixfmh4h3i0sr0q52p"; depends=[lpridge]; }; - dynOmics = derive2 { name="dynOmics"; version="1.0"; sha256="10aw362hhwqdnjf7xxzy25fdxq2zznzvg6xwvl25a9ppj76nm1rh"; depends=[ggplot2 gplots snow]; }; - dynRB = derive2 { name="dynRB"; version="0.10"; sha256="0nd1z96rrd7dv1212ibf268dws64n7d9dqzgrqmzs4qz7gwwhngl"; depends=[caTools corrplot]; }; + dynOmics = derive2 { name="dynOmics"; version="1.2"; sha256="0fsck5wx4rcfckjr6xg0s3a6cvh4881cqzy0af91icqg0p3zjj2l"; depends=[ggplot2 gplots]; }; + dynRB = derive2 { name="dynRB"; version="0.11"; sha256="0xki395r1biasbpg0dp0daql44zszs2d3sb7q08ypcp529c9v40y"; depends=[caTools corrplot ggplot2 RColorBrewer reshape2 vegan]; }; dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; }; + dynamac = derive2 { name="dynamac"; version="0.1.4"; sha256="1gsqgwqamfa8zvl01zsjmbsn7q73m4aii6gzb5khppw244qjgw8y"; depends=[lmtest MASS]; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; - dynamichazard = derive2 { name="dynamichazard"; version="0.5.1"; sha256="11lx88g0rizwxa4rfmaz9b2g8p7nnzgiqz5b0gqsc4dvz92i74fg"; depends=[boot data_table Rcpp RcppArmadillo stringr survival]; }; + dynamichazard = derive2 { name="dynamichazard"; version="0.5.3"; sha256="1ggz3i4l5p23gkk0mvfgkiv9q8gmnamjyss8kz5i870ymwnxya09"; depends=[boot Rcpp RcppArmadillo survival]; }; dynamo = derive2 { name="dynamo"; version="1.0"; sha256="0arsv686ix7xpca57ayqgifim1q35dl4w2mx7fw8bc0lidapilyp"; depends=[abind glamlasso MortalitySmooth Rcpp RcppArmadillo]; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; }; dyncomp = derive2 { name="dyncomp"; version="0.0.1-5"; sha256="1626z5523s4igw55fw97lplfgg9mzf4np8imrarkligslvc5q8ip"; depends=[zoo]; }; @@ -5898,29 +5954,32 @@ in with self; { dynsbm = derive2 { name="dynsbm"; version="0.5"; sha256="01vi4qzgp25l4wg2ij9pqrn775x4yj9gck0l397nwjg96pa7x2lz"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.1"; sha256="0nkxn9v4f353fhcn1vsdrh29mrms10zid63b84flg3c6hvc0x4qr"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive2 { name="dynsurv"; version="0.3-6"; sha256="12bfv6bykgsyxryydhjs89yvk7akam5gy89mzn1hv4ilrpc5mlmw"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; + dynutils = derive2 { name="dynutils"; version="0.1.0"; sha256="0fr9gnsafi02ydmp84kv8lq6q4mcf4sg1izgd4h1s1ljvgwq3yqp"; depends=[crayon desc devtools dplyr glue magrittr processx purrr Rcpp stringr testthat tibble tidyr]; }; e1071 = derive2 { name="e1071"; version="1.6-8"; sha256="08n6i26nfckjpxjkzi8phhanc3ahsrirkv5rz38y2jcv7ds031pn"; depends=[class]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.1.3"; sha256="1lrkmfs2sq9p2n7g528jf6wxixqk08w468nckkij2mprhrccjjj6"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard]; }; - eDMA = derive2 { name="eDMA"; version="1.5-0"; sha256="111iphlcxfy891xwxma7h8qylazwxhx6srffid4i167kd1dibkak"; depends=[Rcpp RcppArmadillo xts zoo]; }; + eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; + eDMA = derive2 { name="eDMA"; version="1.5-1"; sha256="0yhywv6bfb1pb6rxkw484kf2knnqar407v5khhs023kdjb01iy8q"; depends=[Rcpp RcppArmadillo xts zoo]; }; eHOF = derive2 { name="eHOF"; version="1.8"; sha256="0g0sb98mlgvhs27s0a1x0ysj3r4p3r7i382fqzfv29kn1ayw0r5c"; depends=[lattice mgcv]; }; eLNNpaired = derive2 { name="eLNNpaired"; version="0.2.3"; sha256="08nck2p5npyw264kgcqmgx5rx7c3h9v892f90xlcd1dnb7dqlan3"; depends=[Biobase globaltest GSEAlm iCheck samr]; }; eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; - ePCR = derive2 { name="ePCR"; version="0.9.9-4"; sha256="0lnkb4zffn62vbx8hh953z9zh0plj8l15cc1k3x936zblzgd226r"; depends=[Bolstad2 c060 glmnet hamlet impute MASS Matrix pracma ROCR survival timeROC]; }; - eRm = derive2 { name="eRm"; version="0.16-0"; sha256="18shx4jjvymhzdab1qvlfqnmg49mwllyw3v46j9v19dy6h9l3n8m"; depends=[lattice MASS Matrix]; }; - eVenn = derive2 { name="eVenn"; version="2.4"; sha256="1qs5qsrc89kb6w6xqc8jdxkih6h48zprvavffdqhxq4ab4i1nvbf"; depends=[]; }; + eNetXplorer = derive2 { name="eNetXplorer"; version="1.0.1"; sha256="196m8cbd95pc8w03n0nxc625mxwpqpcw3lc3cbrvpzaljmfhqn2v"; depends=[calibrate glmnet gplots Matrix progress RColorBrewer]; }; + ePCR = derive2 { name="ePCR"; version="0.9.9-6"; sha256="1q46njiqasrma9vr8p7m9ndwag53aavbg4l7a4shgys3w862m7kc"; depends=[Bolstad2 c060 glmnet hamlet impute MASS Matrix pracma ROCR survival timeROC]; }; + eRm = derive2 { name="eRm"; version="0.16-1"; sha256="1wyzqhka7k4a4xclicc098zgi0y2fbx4fray144qx1pyaa8p8075"; depends=[lattice MASS Matrix]; }; eaf = derive2 { name="eaf"; version="1.8"; sha256="1plzvfa2vs3njky7xk9dvic2xapdnzb5iycrksv0qj03ylbh6410"; depends=[modeltools]; }; earlyR = derive2 { name="earlyR"; version="0.0.1"; sha256="14davqhh3n5dfsddnfd79ni56bssrpwhvkqkdb77a8x9fn8w32pv"; depends=[distcrete EpiEstim epitrix]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; - earth = derive2 { name="earth"; version="4.6.2"; sha256="1ma2qgbkw0if93wd6fk6611xkznadfxy6v6xawrk4n9b5im3j6f4"; depends=[plotmo TeachingDemos]; }; + earth = derive2 { name="earth"; version="4.6.3"; sha256="0af02qi3np40p90v0npnwqa5dg2zszky6kjx9zjw7id7jw5kx1m6"; depends=[plotmo TeachingDemos]; }; earthtones = derive2 { name="earthtones"; version="0.1.0"; sha256="1phl50bgd40i36fdkfs9xkqm703vgwxlnpyik6lk8ssip0m4rn9j"; depends=[ggmap]; }; easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; }; + easyCODA = derive2 { name="easyCODA"; version="0.23"; sha256="0mik051b34p66a2ipwi512926wl5r1zdqhdam68cr13sar2c0cbq"; depends=[ca]; }; easyDes = derive2 { name="easyDes"; version="3.0"; sha256="1z4ynd1ck2vxsshygjgnhyzg8i41kpnwsfix96nmgwm3861n0phb"; depends=[multcomp PMCMR]; }; easyNCDF = derive2 { name="easyNCDF"; version="0.0.4"; sha256="1hd7b6pdm5j41a4v0jxhbqdy2bz5gj86fsfwj0l7gg7h32d6hkhq"; depends=[abind ncdf4]; }; - easyPubMed = derive2 { name="easyPubMed"; version="2.3"; sha256="148ga6flgv74sfzz5kvvnqhfdkx6zhpl6ydzcd32lz3cq24ckli9"; depends=[XML]; }; + easyPubMed = derive2 { name="easyPubMed"; version="2.5"; sha256="08b94pcya9bmnsipd1jn95dpadw2aqb0fnvm68n11mwg40hd272j"; depends=[XML]; }; easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; easySdcTable = derive2 { name="easySdcTable"; version="0.3.1"; sha256="0z0fq73m7vjc8wry633lvz58r2c6a6zz6w867hij1627c74mjhs4"; depends=[sdcTable shiny SSBtools]; }; easyVerification = derive2 { name="easyVerification"; version="0.4.4"; sha256="08mih1arx01vj7cs1jsln644pcvslpyw1rgr6jmv2czr6xd8qb7d"; depends=[pbapply Rcpp SpecsVerification]; }; easyanova = derive2 { name="easyanova"; version="5.0"; sha256="13m4ddvl3nbh610y00nnihmag62g39v4ds7rx6lmifx4zq86mylp"; depends=[car nlme]; }; - easycsv = derive2 { name="easycsv"; version="1.0.7"; sha256="03bhcylvs9q3bv4svj4mznqzv5h0m773vbikpymawk94r3gg0qaz"; depends=[data_table]; }; + easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; easyformatr = derive2 { name="easyformatr"; version="0.1.2"; sha256="0mrpd21hyafn82apclxmhs2jbd87sdw0g6lwc3h6gl5cbm213nxb"; depends=[dplyr knitr lazyeval magrittr stringi tibble tidyr]; }; easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; }; @@ -5937,118 +5996,122 @@ in with self; { ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-10"; sha256="1n6wvz463w0ainn9a52arjhs5q9pwciknb5328pr6y287fwa3nnn"; depends=[spatstat]; }; + echo_find = derive2 { name="echo.find"; version="1.1.1"; sha256="074qk22dsz29w88ydrwshjzzhrh86wyyjiiwiahq4ns5m64szw7n"; depends=[minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.1"; sha256="0f93s9f1ghin8129vb3bvsp7jmy2hfrx97p86hci8b2y4f7b83qh"; depends=[geosphere readHAC]; }; + echor = derive2 { name="echor"; version="0.1.0"; sha256="0242yk02qkcfrivxc3zgaw3awmj4b6ra38h1gg21795yrpzcyv02"; depends=[dplyr httr jsonlite lubridate purrr sf tibble tidyr]; }; ecipex = derive2 { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; }; eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; - ecm = derive2 { name="ecm"; version="3.0.0"; sha256="19szjkfy2iivdw5zbag9mbk3pm7a8qb6hvg1y4jdrpf519xb4935"; depends=[car]; }; + ecm = derive2 { name="ecm"; version="4.0.0"; sha256="09678l6sh61f51jfpmkk4bkxind8jdn6izw6bizshr1bvk8lapjc"; depends=[car]; }; eco = derive2 { name="eco"; version="4.0-1"; sha256="08fblbr9qp2v0cp69hy68c18xjqvx0nsnx42n2vd1gc6r7apapj6"; depends=[MASS]; }; ecodist = derive2 { name="ecodist"; version="2.0.1"; sha256="04piv52b4b9rgv1gy6s3b1lzapc0rqiwp1yi7f8yzgjd9329kc5g"; depends=[]; }; ecoengine = derive2 { name="ecoengine"; version="1.11.0"; sha256="1d5x6hvqrqjj0wg07m4dbgb9ljdq73ibavzy2q5magnfn50a7rzm"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; + econet = derive2 { name="econet"; version="0.1.6"; sha256="1izb7ssb5a5r5qky3jzyp2j5p1qlhq7vhl8nhz2xhkiks8xgf4xg"; depends=[bbmle dplyr igraph intergraph MASS Matrix minpack_lm plyr sna spatstat_utils tnet]; }; econullnetr = derive2 { name="econullnetr"; version="0.1.0"; sha256="0l4qy7x8f8sjc3s1bhz3kadfqifw0x9jl7dvcjwkh9q14h093cz5"; depends=[bipartite gtools reshape2]; }; ecoreg = derive2 { name="ecoreg"; version="0.2.2"; sha256="1yzyqvhshgc7ip251y7hsvip4xwf8i92bvvz84mn0mzv5b4mq3im"; depends=[]; }; ecoseries = derive2 { name="ecoseries"; version="0.1.5"; sha256="1q35hp5hl6z28hns5rnp3mjn6hqp5qh714pagw7fw4d4a6wnvacy"; depends=[magrittr RCurl readr rjson rvest tibble xml2 zoo]; }; ecosim = derive2 { name="ecosim"; version="1.3"; sha256="00arz8j2az1nn4p96pshw0p9xxq2qfgkyrf4ahvl1hp1h3k68jfn"; depends=[deSolve stoichcalc]; }; ecospace = derive2 { name="ecospace"; version="1.3.1"; sha256="0xrhlhpndycj2hdf50lygymc1hwmczx74r6l9f2qmm6v90c0729k"; depends=[FD]; }; - ecospat = derive2 { name="ecospat"; version="2.2.0"; sha256="0awzhzl90j72jxp7qk5q5vqmgyccbkw2rbw0jrhjvlwkr5q9gyvx"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators maptools MigClim PresenceAbsence randomForest raster rms sp spatstat vegan]; }; - ecotox = derive2 { name="ecotox"; version="1.3.1"; sha256="1is4zn7rabpibpnyy9mwpcjdhhb02r0a2r5azw9i5asshr2d1ywi"; depends=[ggplot2 magrittr]; }; + ecospat = derive2 { name="ecospat"; version="3.0"; sha256="1c9cbxs022f2bjnvgdfxhmqkzr30svna596r1fn5i7zsqd7dm0w6"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators maptools MigClim poibin PresenceAbsence randomForest raster rms snowfall sp spatstat vegan]; }; + ecotox = derive2 { name="ecotox"; version="1.3.2"; sha256="12nng1v73lshcy99hqrp5a1qy052z0cz5n97bq7fla7zc4is69y5"; depends=[ggplot2 magrittr]; }; ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; - ecoval = derive2 { name="ecoval"; version="1.1"; sha256="0ihig6nq3lrz6lzix92lrlzywnqkzsp5lrbccn5slhxdj5llird2"; depends=[rivernet utility]; }; + ecoval = derive2 { name="ecoval"; version="1.2"; sha256="098n31py05f0ram733jdc85ki3fcpjc40yn7wsi7g74jyhdb1qms"; depends=[jpeg rivernet utility]; }; ecp = derive2 { name="ecp"; version="3.1.0"; sha256="0siq5acpy4wmqzm6zvpqj1m8a05hgk5jhb1clv06y40kqk5kjrap"; depends=[Rcpp]; }; ecr = derive2 { name="ecr"; version="2.1.0"; sha256="0vvkdxlcqaim9mkgwgdxrx1xhw3lshi1nxfw3kqllq14p3l6xss4"; depends=[BBmisc checkmate ggplot2 parallelMap ParamHelpers reshape2 smoof]; }; eda4treeR = derive2 { name="eda4treeR"; version="0.2.0"; sha256="0fh6nfgvbkvjm1f0b292ggi0mr8ylq5pg2wp8cph46j8rhbgbdxz"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; }; edarf = derive2 { name="edarf"; version="1.1.1"; sha256="0f27hs7vn4v2jis3d66s48hr0ki8m8ndspcw1cwns5vjwb77iqwm"; depends=[data_table ggplot2 mmpf]; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; - edci = derive2 { name="edci"; version="1.1-2"; sha256="10rqkimvmyb7hxp4wkpj8bq07q3yaimm058d4mmr09fw25lqyz1q"; depends=[]; }; + edci = derive2 { name="edci"; version="1.1-3"; sha256="1f1ry2adfranfrrvf1gkiy58pra3z6bray4v5fgr0z9n1ybcaff0"; depends=[]; }; edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; - edeaR = derive2 { name="edeaR"; version="0.8.0"; sha256="1qpkb5ysz5lbkqdxszgzkn7s77h6fqqd62pc0nn2abjgq2hb8a9j"; depends=[bupaR data_table dplyr ggplot2 ggthemes glue lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr]; }; + edeaR = derive2 { name="edeaR"; version="0.8.1"; sha256="1znd9k6ia62j8rqb72lqp4b76hw659zgw3dri0z2029w0pn2m3x1"; depends=[bupaR data_table dplyr ggplot2 ggthemes glue lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr]; }; edesign = derive2 { name="edesign"; version="1.0-13"; sha256="0fc3arr8x9x9kshp6jq4m4izzc5hqyn5vl0ys6x0ph92fc6mybp3"; depends=[]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; edfReader = derive2 { name="edfReader"; version="1.2.0"; sha256="0r4918swpfddz246kkvy10a07s178zmwp7m4ydxvi8di6iga76hk"; depends=[]; }; edfun = derive2 { name="edfun"; version="0.2.0"; sha256="1wxx6bgy03z7c1d6556bbjl1cb49n2vn734fw2d5c1jk0zsh3fmz"; depends=[]; }; edgar = derive2 { name="edgar"; version="1.0.9"; sha256="1jh0aaizirj4i4kc6gq9kkpa1xdqxbjhj7fys8ap1xxxx6nfpcnf"; depends=[ggplot2 R_utils RColorBrewer tm wordcloud XML]; }; - edgarWebR = derive2 { name="edgarWebR"; version="0.3.1"; sha256="0gakrgag7rm18njhrs7bq99mv7yn7yxis9yscz88va16dqdp17l8"; depends=[httr xml2]; }; + edgarWebR = derive2 { name="edgarWebR"; version="1.0.0"; sha256="0rnf3s5d5sclvd4y195mfkrazg4qvpyyrgl6jcqikygbcz8hg3j8"; depends=[httr xml2]; }; edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; edgeRun = derive2 { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table edgeR]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; editData = derive2 { name="editData"; version="0.1.2"; sha256="1ibpd2rlm6i9izyizmdhzxv8agrw920hxbin5y79cmf78rdg1sxy"; depends=[DT miniUI rstudioapi shiny tibble]; }; - editrules = derive2 { name="editrules"; version="2.9.0"; sha256="14mfa8flkym2rx9n7bq9icc9fsrk3szib3amx5l0008rxll9qnxm"; depends=[igraph lpSolveAPI]; }; - edpclient = derive2 { name="edpclient"; version="0.3.1"; sha256="0czvwyp7z27cydsjwf3xrk88g62vsllgfcwrq13ylgki7zw5gclj"; depends=[httr ini jsonlite plyr]; }; + editrules = derive2 { name="editrules"; version="2.9.3"; sha256="07j8wj0fk34irqgsz70h2wad3wdjv5xl1cl702vxbr0nvmpw2ngl"; depends=[igraph lpSolveAPI]; }; + edpclient = derive2 { name="edpclient"; version="0.5.1"; sha256="1ik554fv0ji0vaknqgv726y0vh42i96bp7l4sja4bn001rkmnx4n"; depends=[httr ini jsonlite plyr]; }; edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.2"; sha256="105jv2sz10xbl881lkhgmxzgmb8629mqsminhd197khrkf9nv40i"; depends=[lasso2 MASS mvtnorm rgl]; }; edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; educineq = derive2 { name="educineq"; version="0.1.0"; sha256="0qd6kvcy280glv3q6lcrawmnsfvp90as95chgi3hav0yj2dpakn6"; depends=[flexsurv ineq]; }; eechidna = derive2 { name="eechidna"; version="1.1"; sha256="01c1b41fzkq1hgg7705n96m1ji74gbfy9fisdj5pl0kgjhjiq24w"; depends=[dplyr ggplot2 ggthemes plotly rgdal rmapshaper rvest shiny shinyjs tidyr xml2]; }; eefAnalytics = derive2 { name="eefAnalytics"; version="1.0.6"; sha256="07wpz8zlgkbzkhmv569w7rnz3i830391arrh17sg2gc4fx9h1559"; depends=[geoR lme4 metafor mvtnorm]; }; - eegkit = derive2 { name="eegkit"; version="1.0-2"; sha256="10dksmc5lrl0ypifvmmv96xnndl2zx191sl79qif0gfs3wq3w4s0"; depends=[bigsplines eegkitdata ica rgl]; }; + eegkit = derive2 { name="eegkit"; version="1.0-3"; sha256="15ycx7141sfsja5s94w30cf3rpykh00cjcdhr5923525hi1bavn1"; depends=[bigsplines eegkitdata ica rgl]; }; eegkitdata = derive2 { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; }; eel = derive2 { name="eel"; version="1.1"; sha256="0cv6dhw57yy140g73z94g9x1s42fpyfliv9cm2z1alm7xwap1l0x"; depends=[emplik rootSolve]; }; eemR = derive2 { name="eemR"; version="0.1.5"; sha256="13c5k2si8aq2461iz9413hlqzgkb25zrdfvizzk8s2nn60npyaw9"; depends=[dplyr pracma R_matlab readr rlist stringr viridis]; }; - eeptools = derive2 { name="eeptools"; version="1.1.1"; sha256="15b7rdjcl00jdb59llmgmwbxk31shayyv5skfbljwwm7vkwa22j7"; depends=[arm data_table ggplot2 maptools memisc vcd]; }; + eeptools = derive2 { name="eeptools"; version="1.2.0"; sha256="14cmvshalfvh1zd1gp2dsp42kjxw2pdfixwlk9zvlw7ncx9y83j3"; depends=[arm data_table ggplot2 maptools vcd]; }; eesim = derive2 { name="eesim"; version="0.1.0"; sha256="0ljj1jp9cl0im8k7sfjd28ggj4q9a14df3554kwxkssr1vsn1wbc"; depends=[dplyr lubridate purrr viridis]; }; effectFusion = derive2 { name="effectFusion"; version="1.0"; sha256="1nx61n4lgnj6wh4arqm62p9xwxqvz4g7bs4b5k3ybkhmh6ns9v5l"; depends=[bayesm cluster ggplot2 MASS Matrix]; }; - effectR = derive2 { name="effectR"; version="1.0.0"; sha256="08r1jifrqa9fxm5jp6jsvazdpql53kpm6mj0sg70hvd8q0cilryb"; depends=[ggplot2 reshape2 seqinr shiny viridis]; }; - effects = derive2 { name="effects"; version="4.0-1"; sha256="042f6gb799agqqxawd6ddlzplyxkd1h5v9pm759zmnj2094smw6q"; depends=[carData colorspace estimability lattice lme4 nnet survey]; }; + effectR = derive2 { name="effectR"; version="1.0.1"; sha256="11kqp0si5jm3ffw7d1kq5b6qwdzwijdp1n2hv8a3fa5vppkp43ws"; depends=[ggplot2 reshape2 seqinr shiny viridis]; }; + effects = derive2 { name="effects"; version="4.0-2"; sha256="10anvrn5v04i985d06fxv099970vvjllms7iwpbpa488zv5k9b81"; depends=[carData colorspace estimability lattice lme4 nnet survey]; }; effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; effsize = derive2 { name="effsize"; version="0.7.1"; sha256="0l0ja7qcknn8r5hf7nrjk5cy0ajw0z60ggbyj8qvjzf8qah4mlss"; depends=[]; }; efreadr = derive2 { name="efreadr"; version="0.2.2"; sha256="1h27by1m451wrnw017005avs5yj3fjzrm2lq5153aqm1mbbxxwvs"; depends=[dplyr ensurer magrittr readr]; }; + efts = derive2 { name="efts"; version="0.9-0"; sha256="1cdn37sij3q73z9gal6x3nnnds55whfj5ywyww119hx092xcb2h4"; depends=[lubridate magrittr ncdf4 plyr stringr udunits2 xts]; }; ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; }; egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; - egg = derive2 { name="egg"; version="0.2.0"; sha256="03k6xnbpakzgwlirxcvhrb10qh1pqvj9mv8rhr4snhnf753rb75j"; depends=[ggplot2 gridExtra gtable]; }; - eggCounts = derive2 { name="eggCounts"; version="1.4"; sha256="04rhyfckkg3q6n6izbmhh1m6ywywvrr719isnx8qghlx774qab86"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rstan StanHeaders testthat]; }; + egg = derive2 { name="egg"; version="0.4.0"; sha256="11zi42wvjd5x68xrxsqwzwdr9mb3iw9pm02mgy3z6m21mgyvgnmn"; depends=[ggplot2 gridExtra gtable]; }; + eggCounts = derive2 { name="eggCounts"; version="2.0"; sha256="0qlx1wm50zh5mp3bn6lkkq43d19ji2fwa4x0z5f98qhmhxa74lck"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rootSolve rstan StanHeaders testthat]; }; + egoTERGM = derive2 { name="egoTERGM"; version="1.0.0"; sha256="10q52552srz2s9v3r3k4y8v8jfcb1arirw3mr1p9a5nbixdcnp8z"; depends=[boot btergm ergm GGally Matrix network sna speedglm statnet xergm_common]; }; egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; + egor = derive2 { name="egor"; version="0.18.06-02"; sha256="1q0kvgz04d80drvgli1pmra6dcn77swk8z19sj3lkqx3qmgjqn7m"; depends=[dplyr igraph network plyr purrr shiny survey tibble tidyr]; }; eha = derive2 { name="eha"; version="2.5.1"; sha256="0www19cc80xg2hi1ibajqnp931gda9pk95cnx976lq1kpxzb2pyl"; depends=[survival]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; eiCompare = derive2 { name="eiCompare"; version="2.1"; sha256="0kv4k1zk1gz3fapy2i2ydy0n38hy95i10r3hr3dx8mkkf3nsj46h"; depends=[cubature data_table ei eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; }; eiPack = derive2 { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; }; - eigenmodel = derive2 { name="eigenmodel"; version="1.01"; sha256="0p9n28x5gg46nszzd2z9ky5fhv6qa070673i1df6bhjh962aqgaf"; depends=[]; }; + eigenmodel = derive2 { name="eigenmodel"; version="1.10"; sha256="1x613ipqpsq5yj4bb68g7yfwavd75n02xajr2cpbzsa2vyipvpsa"; depends=[]; }; eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; }; - eive = derive2 { name="eive"; version="2.1"; sha256="1vazl5dnrvljd07csy9rjs4302w09h94i411gffg9fvxn70km7qg"; depends=[Rcpp]; }; + eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; }; eiwild = derive2 { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; }; eixport = derive2 { name="eixport"; version="0.3.0"; sha256="1ykv5jqri4zkshawck3lfl6jrzw24k27gwhi02rckzbrg2nb3909"; depends=[ncdf4 raster sf sp]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; - elastic = derive2 { name="elastic"; version="0.8.0"; sha256="17aqf0a3spwh8k7s3kgnccbgad3sr3w63if96piygjz0lxgc7kzs"; depends=[curl httr jsonlite]; }; + elastic = derive2 { name="elastic"; version="0.8.4"; sha256="0s0nz8j4f1qxjlgzllnfsirbpcggmb5f41zwdrb9xgwpnpn68jz9"; depends=[curl httr jsonlite]; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; elasticnet = derive2 { name="elasticnet"; version="1.1"; sha256="1x8rwqb275lz86vi044m1fy8xanmvs7f7irr1vczps1w45nsmqr2"; depends=[lars]; }; elasticsearchr = derive2 { name="elasticsearchr"; version="0.2.2"; sha256="0jawypqlk8374izh3gq9k6fwc2gwn74xa9lbmx4ww3rq2xp90xw6"; depends=[httr jsonlite]; }; elec = derive2 { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; - elect = derive2 { name="elect"; version="1.1.1"; sha256="025h69qsify0v3bsr9082wjdkglmarkjaqqkwr8j826466617n1v"; depends=[msm nnet]; }; + elect = derive2 { name="elect"; version="1.1.2"; sha256="1m79z697abzrddy849kshwqfygji3n56xz0flwa7xrqhx3nqrj3b"; depends=[msm nnet]; }; elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.0"; sha256="18aq1yz2l2g4cjbmk18n5vl8x8lkp90xwm82l0bg1z1smyv3agan"; depends=[data_table dplyr haven magrittr]; }; electoral = derive2 { name="electoral"; version="0.1.0"; sha256="0y4kkxm8vmj4gsan6qyhg28b0b6hgl4fghslk21d8w5w6syln4kh"; depends=[dplyr ineq tibble]; }; - elementR = derive2 { name="elementR"; version="1.3.5"; sha256="1b9f601r0gdcyclr23rf33skbbvh7lnr4nlmgcwxixkfsg8mabs9"; depends=[abind colourpicker devtools EnvStats gdata gnumeric lmtest outliers R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2 zoo]; }; + elementR = derive2 { name="elementR"; version="1.3.6"; sha256="12gg2x6xzms2ni80qdm04bfajg55ff6zkki0y2cz47kq70wzfkmg"; depends=[abind colourpicker devtools EnvStats gdata gnumeric httpuv lmtest outliers R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2 zoo]; }; elevatr = derive2 { name="elevatr"; version="0.1.4"; sha256="0gxwlcfn271p8gf2iqwqbi61kcaahfdghsc0rwm3xxxysjb5a2b2"; depends=[httr jsonlite progress raster ratelimitr sp]; }; elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; }; elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; }; - elliplot = derive2 { name="elliplot"; version="1.1.1"; sha256="1sl85kyjpxiw0gs3syhlhfrci03fl054py7m24xln5vk07665vbp"; depends=[]; }; + elliplot = derive2 { name="elliplot"; version="1.2.0"; sha256="186i4gr8k9bifzssblln8z6wxfmnplls3kc4m2liiz86mzsnim9r"; depends=[]; }; ellipse = derive2 { name="ellipse"; version="0.4.1"; sha256="0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"; depends=[]; }; elliptic = derive2 { name="elliptic"; version="1.3-7"; sha256="1bzd5x0yph76jh59ljl875grm52s8xpnmbgww1jjxx0hgkv7938g"; depends=[MASS]; }; - elmNN = derive2 { name="elmNN"; version="1.0"; sha256="129r6d3qa48gqvqxks53hdmyk3jjakddsj5fwj91kqq0hkm34kyd"; depends=[MASS]; }; + elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.0"; sha256="0jl5vr2zszsapdvwcwg1m2li20k377jzyzdrz4inirsqfy5zlymq"; depends=[KernelKnn Rcpp RcppArmadillo]; }; elo = derive2 { name="elo"; version="1.0.1"; sha256="0dhlac5l68a3jps2hx0bc7qjj8hsr1ha137hcwxnrfdwnki6chlp"; depends=[pROC Rcpp]; }; - elrm = derive2 { name="elrm"; version="1.2.2"; sha256="0wz0l703v0iyp7nswdmh65n0cy3a7rfvyxd795a6nzk3nich8bfg"; depends=[coda]; }; emIRT = derive2 { name="emIRT"; version="0.0.8"; sha256="17igda5phgfapjzg7dkid5jj49gmwgpadjr27z7s21365i7md9mz"; depends=[pscl Rcpp RcppArmadillo]; }; embryogrowth = derive2 { name="embryogrowth"; version="7.4"; sha256="10h80jy391bm1avmh347ly3a1vhlhbpfbhrf39xl7x4nwcckd6bp"; depends=[deSolve HelpersMG numDeriv optimx]; }; - emdbook = derive2 { name="emdbook"; version="1.3.9"; sha256="09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"; depends=[bbmle coda lattice MASS plyr]; }; + emdbook = derive2 { name="emdbook"; version="1.3.10"; sha256="0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="1.1.2"; sha256="135dnc7djxa7kyhaa0rd42m396ccic4mgd5pq4qj8zqgd2swj2aa"; depends=[boot ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rgeos]; }; emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; - emg = derive2 { name="emg"; version="1.0.6"; sha256="1kzmxs224m6scmk8gg5ckx5c7is99hwgwv28yl26hnrbkm59skyh"; depends=[]; }; + emg = derive2 { name="emg"; version="1.0.7"; sha256="1d4l9kcji6ba137f1qqjl763q2fd6bxryxsarc3iwi3mfi2b580m"; depends=[]; }; emil = derive2 { name="emil"; version="2.2.8"; sha256="02xjf8ipqr136y3pa375lwpg6h63yvbphhghs9jjxfl2r4fdkvcn"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; - emmeans = derive2 { name="emmeans"; version="1.1.3"; sha256="150kgc5ymssmcf240js4jrbhm32xn4bayrzbxry12mh1lcr9kvf2"; depends=[coda estimability ggplot2 multcomp mvtnorm nlme plyr xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.2.2"; sha256="1ivrg1lp6cqffgg8hnfpw65zbkms6fbsgbw8nprbzfvfk7rrd8wd"; depends=[estimability mvtnorm plyr xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; }; - emojifont = derive2 { name="emojifont"; version="0.5.1"; sha256="0i4id9631ah5vzkzh6zfxgk55b2ppnbgabp1w2ivy29i0nji9wk4"; depends=[ggplot2 proto showtext sysfonts]; }; + emojifont = derive2 { name="emojifont"; version="0.5.2"; sha256="0s1as6i5dz2rbd1aashn99fji2iksjzrkdkfi7wqnnxxpmkha3yx"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; }; emplik = derive2 { name="emplik"; version="1.0-3"; sha256="0b52383m2djdcg9b1a7r10k5pkzljz6dalvbg2gg962ckvpndb11"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; }; - ems = derive2 { name="ems"; version="1.0.0"; sha256="1x6zsrf15xn865v8awbnq1cpaqp5j2k1pmis5a8mjnw568xi0hhw"; depends=[]; }; emuR = derive2 { name="emuR"; version="1.0.0"; sha256="19740da4m22v9ys1z8q80khf71fjbaisn1f6whgal7p3cinvkcr3"; depends=[base64enc compare DBI dplyr httpuv jsonlite MASS purrr RCurl readr RSQLite shiny stringr tibble uuid wrassp]; }; - emulator = derive2 { name="emulator"; version="1.2-15"; sha256="1rp7q7zs8b49jzdkbzm4s1g8554h41hcabf4d78k9jhhys2z28g2"; depends=[mvtnorm]; }; + emulator = derive2 { name="emulator"; version="1.2-17"; sha256="150yg99qzankcqs74jvp35al9gla5vnfylwaswcw6yryi239mgi8"; depends=[mvtnorm]; }; enaR = derive2 { name="enaR"; version="3.0.0"; sha256="0sy7k8l6b8p34bcf9bpjr1y6qkjkvn77y2w2ws7ivcr1fynrhm5p"; depends=[gdata limSolve MASS network sna stringr]; }; enc = derive2 { name="enc"; version="0.2.0"; sha256="0n4s3abxmpndppm18dcibap2n22xpjzafn5xjskfdfrz3wjfy1kb"; depends=[]; }; encode = derive2 { name="encode"; version="0.3.4"; sha256="1ibrxa0lzni8c1nm3x061vj55faz8fvfgbl7c7b2wfanh5qnny9j"; depends=[]; }; @@ -6056,15 +6119,15 @@ in with self; { endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; endorse = derive2 { name="endorse"; version="1.6.0"; sha256="1j75sb2di2c092dilbjj5qsvb52h3zmm7wxflf9kg7xw227wq3zw"; depends=[coda]; }; endtoend = derive2 { name="endtoend"; version="1.0"; sha256="0x8f6h0mznmncqdwvsp2f0x524g5clgvk64qflf373lyn6h1v0ap"; depends=[]; }; - energy = derive2 { name="energy"; version="1.7-2"; sha256="19c7bgjnm4ggf7w5mk64c5shkma3sa9wc8x117iqv7pk1bvvyy3p"; depends=[boot Rcpp]; }; + energy = derive2 { name="energy"; version="1.7-4"; sha256="12skvlridfq4jd5mh0yxl79ps0zi2xnlh4hsdgxad0gm7qky8awd"; depends=[boot Rcpp]; }; energyr = derive2 { name="energyr"; version="0.1.1"; sha256="1mid5f8l6v55pjzfx304a303mkn9b5r3jzmjl2fi2pz4v2jsdw04"; depends=[RgoogleMaps]; }; enetLTS = derive2 { name="enetLTS"; version="0.1.0"; sha256="0lqnhrsg9fnkn8z5crdrajpgavk1knr9z4sbdffpa6q9n8s5pmhr"; depends=[cvTools ggplot2 glmnet reshape robustHD]; }; - english = derive2 { name="english"; version="1.1-2"; sha256="1wlqpl85rq49ndrfqlixayp4zzvpad0snln5qirr1i3y2q510dgx"; depends=[]; }; + english = derive2 { name="english"; version="1.1-3"; sha256="032yc8ls3i6k5il40k3b0n55n2pj8zkm5kackrvsdsslywhainkw"; depends=[]; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; - enpls = derive2 { name="enpls"; version="5.9"; sha256="07id08k7pg2gvlyn8vnjprpr0gnggldg9am1h62s50dw54axixwd"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; + enpls = derive2 { name="enpls"; version="6.0"; sha256="07cwxxxsz2rj6d9dhmbfbv1vmk753ca7yy8ssq8lp4lxz3n4cp6p"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="1.0"; sha256="0lfdr45sdyqhvgz8q4qdbk12mpv86d6id665kq6aaslgr8jggfmn"; depends=[httr rjson]; }; enrichvs = derive2 { name="enrichvs"; version="0.0.5"; sha256="0x91s03hz1yprddm6mqi75bm45ki3yapfrxmap7d4qc0hi06h22k"; depends=[]; }; - enrichwith = derive2 { name="enrichwith"; version="0.1"; sha256="10x7p0s96hkalnnnwx2gczywblqxig9p4pllzk1ciyjjfidsc9va"; depends=[]; }; + enrichwith = derive2 { name="enrichwith"; version="0.1.1"; sha256="0ccjflhyq18ynk154fpq7pan5a8hlf8vhkqqp023xbq01vfrhssa"; depends=[]; }; ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.5"; sha256="0p744151pbj278lyc8d8p7rc20n70abpfgxz6jr10jarmq3r6x7l"; depends=[chron]; }; ensembleEN = derive2 { name="ensembleEN"; version="1.1.2"; sha256="033i4bcnr62kmrp1fafdw6vx8ir38kqchgxp4fidg3i750nkjnda"; depends=[Rcpp RcppArmadillo]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.8.2"; sha256="16d8030zfdwifqrh45vz3gf5n0bix0mhsmsnydgjq1fghdklcmyx"; depends=[chron ensembleBMA evd]; }; @@ -6074,8 +6137,9 @@ in with self; { entropart = derive2 { name="entropart"; version="1.5-3"; sha256="02jzcqb7sqg9fcf2vi4myki9mgdsx0jwyf535zzh124h1bwz3f3y"; depends=[ade4 ape EntropyEstimation geiger vegan]; }; entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; envDocument = derive2 { name="envDocument"; version="2.4.0"; sha256="0r7h9p0b0gr2l18mv1ydlamsc0iq474dfhp450mdfnw2q289mhrn"; depends=[]; }; + envalysis = derive2 { name="envalysis"; version="0.3.3"; sha256="1ys93g5gxr9x1v4hg98dcpwa40n5xkh1j8drrmpnmxwq6gv01r6r"; depends=[drc ggplot2]; }; enveomics_R = derive2 { name="enveomics.R"; version="1.3"; sha256="1m97lmgf42ifzafz91g69nnf4q918464xir9cqjjn6ch5i7lvi65"; depends=[fitdistrplus investr modeest sn]; }; - enviGCMS = derive2 { name="enviGCMS"; version="0.3.4"; sha256="1wjf1rxwzd590qsyljw1pd59kppx91m32p6nkdy4yvbnv39rk8dq"; depends=[BiocParallel genefilter limma mixtools qvalue rcdk RColorBrewer sva xcms]; }; + enviGCMS = derive2 { name="enviGCMS"; version="0.5.0"; sha256="0q7kyygfwphd553lgnv8pa0zghcjj4wvq2qyh8lx2plj9fp5am3n"; depends=[animation BiocParallel broom genefilter mixtools MSnbase rcdk RColorBrewer reshape2 rmarkdown shiny xcms]; }; enviPat = derive2 { name="enviPat"; version="2.2"; sha256="1cf1h4v05riivjwil4167sncdxzgxf3r4snx1imjb6s4msx67ibi"; depends=[]; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; envirem = derive2 { name="envirem"; version="1.3"; sha256="1axgbjl4wh44vd5r9n9rbxxsi35k806r1kdvrcmmpkzwam6zd2lp"; depends=[raster RSAGA]; }; @@ -6083,32 +6147,34 @@ in with self; { epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.2.1"; sha256="18drz4pi2mqqwp2ji3a8k6mxh04n8yrwggf2p1k7bg3jchgh0kx3"; depends=[]; }; - epanetReader = derive2 { name="epanetReader"; version="0.6.2"; sha256="0xj56ykfrm7m2r0rr4abgv6ip40nc2j1byxhmi7m97b2q953akld"; depends=[]; }; - epiDisplay = derive2 { name="epiDisplay"; version="3.2.2.0"; sha256="1f9kifjgdwxs7c236nsr369ij71rj7l5ady88h4n5p5pjw2h451a"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="0.9-93"; sha256="1i0vi1dx5pjq4rcw8r9g7qkhrn4ra8lffrspzkrrjj12y97izmrg"; depends=[BiasedUrn survival]; }; + epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; }; + epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.1"; sha256="08ym6hcbmajzr4rasdb35fxk79vgpzfc16rmcm34f7f3zzz09dyl"; depends=[foreign MASS nnet survival]; }; + epiR = derive2 { name="epiR"; version="0.9-96"; sha256="0gy2w49mbi9rpxw8bxb5d6i0zddl319ba1wcp24km165h9pvrs9d"; depends=[BiasedUrn survival]; }; epibasix = derive2 { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.0"; sha256="0f4a1y311z3fxw7ygj6fgsq6d2qn0ivxsjlh742pkmg3jb63s0f3"; depends=[colorspace dplyr igraph magrittr threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.2.0"; sha256="0n0100fy65kgw3c7gdmb5z5hmla5ch51b7872snf525a2r581i28"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; }; - epifit = derive2 { name="epifit"; version="0.1.2"; sha256="1i1ngb5kh03gyx1702fwav3dc3mqry1wjzc7ry36hdw0ngawid34"; depends=[MASS]; }; epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; + epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; }; episensr = derive2 { name="episensr"; version="0.9.2"; sha256="1w1228q8q2ysi3xi3m8a9z0c7japj97dssjkzpjcrng094cy82is"; depends=[actuar boot ggplot2 gridExtra llogistic logitnorm plyr reshape trapezoid triangle]; }; episheet = derive2 { name="episheet"; version="0.2.0"; sha256="15c4xbam9b60xkkgmbswj4raln49hk43pxp2l75a7j1wykgkif95"; depends=[dplyr ggplot2 magrittr tidyr]; }; episode = derive2 { name="episode"; version="1.0.0"; sha256="1djk36jkvr8xvhfddqg6xsmhxc3yrgivkm8g2hr4n1qixsk1ad8m"; depends=[glmnet Matrix nnls Rcpp RcppArmadillo]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; - epitab = derive2 { name="epitab"; version="0.2.1"; sha256="0q8fxxx7ddzaj8dxxlsh1a2gxf6byw5041mr7abac9yjjga2kz97"; depends=[kableExtra knitr MASS survival xml2]; }; + epitab = derive2 { name="epitab"; version="0.2.2"; sha256="0yi65bblsikwsa9i7wys1mqf6pp6j01kyc8xkyrhs5n62y1k68nc"; depends=[kableExtra knitr MASS survival xml2]; }; epitools = derive2 { name="epitools"; version="0.5-10"; sha256="1qqa2kam3j3mkbgk62g6lwygk2fkdlrpbi27wl37j4dkdkvx013m"; depends=[]; }; - epitrix = derive2 { name="epitrix"; version="0.1.2"; sha256="1fnmcpjbbk645s7q2jcccjv0q20z8hlzr8sl0jh6d00jrgk8qif4"; depends=[digest distcrete stringi]; }; + epitrix = derive2 { name="epitrix"; version="0.2.0"; sha256="1699v13478379waxkjsimxsq92ya2vd98kddvsv0dr7fldwl4png"; depends=[digest distcrete stringi]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.5-1"; sha256="1r19cvcqf39yf09n3znbdy3dsr7z96yx6zib6031mqqdsxaav5qd"; depends=[elasticnet graph irr lassoshooting Matrix Rgraphviz survival]; }; epr = derive2 { name="epr"; version="3.0"; sha256="0czfz6qkcpa2qqs3pqii27hgpdvdzfrvxl0ip67v58hamq7kvjfv"; depends=[car lme4]; }; + epubr = derive2 { name="epubr"; version="0.4.0"; sha256="0lh4fw16fb6qisygq8k7yf1cg6gm2yi8fqfsfwlaacb43d12bxzm"; depends=[dplyr magrittr purrr tidyr xml2 xslt]; }; epxToR = derive2 { name="epxToR"; version="0.3-0"; sha256="0ckz7cvqsdilfkqap88brh4av9zv1fl3ijs4h4vlwwn7qvdcnhay"; depends=[httr XML]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; equSA = derive2 { name="equSA"; version="1.1.5"; sha256="0sknx2p820i26m1d0ypz4ay5rm4j9i97nvcd3wxawqk72ypvbvw1"; depends=[huge igraph mvtnorm speedglm XMRF ZIM]; }; + equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.1.0"; sha256="1zqhgx1x6lqjwqisl3ydb6yqp3jn6x7dgnc57r93v73sjx2j5aiz"; depends=[lavaan]; }; equate = derive2 { name="equate"; version="2.0.7"; sha256="07cji0z139fk70d4wvrpk5m34fq1pfnqrsw336lgnp5a7zp3jz7n"; depends=[]; }; - equateIRT = derive2 { name="equateIRT"; version="2.0-4"; sha256="0j5dpgp4r5qisgw65yk7x9nwq7wxfppp0n0qqg734gqwjyfyp68b"; depends=[mirt statmod]; }; + equateIRT = derive2 { name="equateIRT"; version="2.0-5"; sha256="0pkcg2331yaq05sn7164qvw3zqq5jxzh34k0c48zbam240ga94js"; depends=[mirt statmod]; }; equateMultiple = derive2 { name="equateMultiple"; version="0.0.0"; sha256="0q29bv8bb0c3sprhnkbbpn31phw37dwgk23v5ny4abzvlcgwncdb"; depends=[equateIRT numDeriv Rcpp RcppArmadillo statmod]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; erah = derive2 { name="erah"; version="1.0.5"; sha256="00vygdrngbp53wip2x6dni3ygwax309i9si3gyqkxxbbkpv24b7i"; depends=[caTools HiClimR igraph ncdf4 nnls osd quantreg Rcpp signal XML]; }; @@ -6122,6 +6188,7 @@ in with self; { ergm_rank = derive2 { name="ergm.rank"; version="1.0.1"; sha256="0k5ffqxn9fspbg82j2cmrcyav3nqjk7cnsq48xwy9i3z3vaq704k"; depends=[ergm network statnet_common]; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[ergm network statnet_common]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; + erhcv = derive2 { name="erhcv"; version="0.1.2"; sha256="1rbgp5ba7drghfgcjfg546210m7pknfmgcbk4n68jpy39c267rvn"; depends=[igraph Rdpack stringi stringr]; }; erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; @@ -6132,56 +6199,56 @@ in with self; { esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esaddle = derive2 { name="esaddle"; version="0.0.3"; sha256="04imppwls6a485kdfwykk4s0pyxas3i92ccghi780ys29y0nggmy"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; esaps = derive2 { name="esaps"; version="0.1.0"; sha256="1rchs4i7n221gyhj9kbka4zmi2lf72q3ak2pdxkr7w6pcx6803yz"; depends=[plyr readODS readxl]; }; - esc = derive2 { name="esc"; version="0.4.0"; sha256="07mgf1kdz6gjkmbsis24gjsppclaxlf7b03jpvasm1k4snfvgb5h"; depends=[dplyr purrr readr sjmisc tibble]; }; + esc = derive2 { name="esc"; version="0.4.1"; sha256="1m1skkg3maklp6ivvh20bddasl2kkpw2p07rb1f9ywr3ypi3iyfj"; depends=[dplyr purrr readr sjmisc tibble]; }; + eseis = derive2 { name="eseis"; version="0.4.0"; sha256="023j91j5s5b84gcgi6i9gs7ky1f8ncimlx2c5s6w37kh13nfhcby"; depends=[caTools fftw IRISSeismic matrixStats multitaper raster Rcpp rgdal rmarkdown signal sp XML]; }; eshrink = derive2 { name="eshrink"; version="0.1.0"; sha256="0s1jl652za7qwv70kmc1h3vbwlijl49527pwpm0z347lz2jdcigj"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.1.4"; sha256="1d1rr11fldxsamn19za03sdyvvybkh3bm5zvlrlkz022jj7pgxlr"; depends=[lubridate]; }; esreg = derive2 { name="esreg"; version="0.3.1"; sha256="19ikfy0g8yd224ah4gyq2k29lz3gagc6vrcv53awvdadqw0cpz8l"; depends=[quantreg Rcpp RcppArmadillo]; }; ess = derive2 { name="ess"; version="0.1.1"; sha256="1i94sfg8r9mnzcmyddq3zb56gwkgqdclyx90a5plpyy5insk13d7"; depends=[haven httr rvest stringr tibble xml2]; }; essHist = derive2 { name="essHist"; version="1.1.1"; sha256="06wmvwjgbb1bfsjn4bv3p2m0i5nc6shn2p62kjp3iv6z42f5wndc"; depends=[Rcpp]; }; - essurvey = derive2 { name="essurvey"; version="1.0.0"; sha256="0wgwqm59wam5sjzn3cjh3fzbq14bfa02gjsszwg2hid1q976clqk"; depends=[haven httr rvest stringr tibble xml2]; }; + essurvey = derive2 { name="essurvey"; version="1.0.1"; sha256="0ks2qx6pzw5g1q6hzaymlcy6slkapw8iajn10gs7l1h5ybdf5w6l"; depends=[haven httr rvest stringr tibble xml2]; }; estatapi = derive2 { name="estatapi"; version="0.3.0"; sha256="0gjc5x1b2l5qnwdg77nzy6d7bf9q93ll39sfy89izqm8wsydwwkp"; depends=[dplyr httr purrr readr]; }; estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; }; - estimatr = derive2 { name="estimatr"; version="0.6.0"; sha256="0763wq8y166zwdxf2wqxvbqwps9di7i7877pffs478qr4rx24z5g"; depends=[Formula Rcpp RcppEigen rlang]; }; + estimatr = derive2 { name="estimatr"; version="0.8.0"; sha256="0xn1rk5z5n9llg9l55wab2lpcvx3azbrkjrfwi84mc3xk1m24y3p"; depends=[Formula Rcpp RcppEigen rlang]; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; - estprod = derive2 { name="estprod"; version="0.0.1"; sha256="0nd2iz1gqinvppyxgxsdh9m26v46h2ra3cc4nqz6dqnqkslzrl4k"; depends=[boot Formula lazyeval minpack_lm]; }; - estudy2 = derive2 { name="estudy2"; version="0.8.4"; sha256="190wxdy1qsf8fgpbp2cr0blwa97vgmdw83pmfk9i44zkpm4nrij1"; depends=[matrixStats Rcpp tseries zoo]; }; + estprod = derive2 { name="estprod"; version="1.1"; sha256="15grcpyhaazd1sl8544gx4zpjqi9p17d6siyb6a1ykzzyy1v1fln"; depends=[boot Formula gmm lazyeval minpack_lm]; }; + estudy2 = derive2 { name="estudy2"; version="0.8.5"; sha256="0aqvlgzp98965xmjmmg2dxj79bjcvgv0qa89h5l1lp0i0c23p908"; depends=[matrixStats quantmod Rcpp zoo]; }; esvis = derive2 { name="esvis"; version="0.2.0"; sha256="0l4c87l9n94q14hwky7d7i4h9c5zh8r04zlcz9w4mx7ixfd34zir"; depends=[sfsmisc]; }; etable = derive2 { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; }; etasFLP = derive2 { name="etasFLP"; version="1.4.0"; sha256="04d526yajakzivlcsz8631p0j482cbbgfpdmzkc9zr1m4495xxif"; depends=[fields mapdata maps rgl]; }; ether = derive2 { name="ether"; version="0.1.4"; sha256="1q6qxda5iw8zj7gy9h35apij5mbndd969ddip7zn5d720131kqra"; depends=[dplyr httr jsonlite Rmpfr]; }; etl = derive2 { name="etl"; version="0.3.7"; sha256="045hkh95ki3s10l9mz4710ws2i9and4rqb0qk1c5sfslglc0riq5"; depends=[DBI downloader dplyr lubridate readr rlang rvest stringr tibble xml2]; }; - etm = derive2 { name="etm"; version="0.6-2"; sha256="0sdsm6h502bkrxc9admshkrkqjczivh3av55sha7542pr6nhl085"; depends=[lattice survival]; }; + etm = derive2 { name="etm"; version="1.0.3"; sha256="1srbllbmc2l1kcw2zi15sja8g3bkwz8bvy7k8al45dhyz8zdrxra"; depends=[data_table lattice Rcpp RcppArmadillo survival]; }; etma = derive2 { name="etma"; version="1.1-1"; sha256="0g9244yx50y1gw0f37hskbcgyv4nldmzr86v3rmf3afabmjbyzjj"; depends=[]; }; etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; etseed = derive2 { name="etseed"; version="0.1.0"; sha256="1kqbhvryqzmckk91ynn68yd7msqdsl6h818r164180f10flszr37"; depends=[httr jsonlite R6]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; - eulerr = derive2 { name="eulerr"; version="4.0.0"; sha256="1zjqzlr67qihvh7v66rggz8khf6f11wqw2cvxjvg07qmh3xk7sf5"; depends=[lattice polyclip Rcpp RcppArmadillo RcppDE]; }; - europepmc = derive2 { name="europepmc"; version="0.2"; sha256="1kh1mma21jjwlwxq2h3l5klzlgy98zsryhs1si9z5cfx48lszxdb"; depends=[dplyr httr jsonlite plyr progress urltools xml2]; }; + eulerr = derive2 { name="eulerr"; version="4.1.0"; sha256="1y4s4g49sy7bkkbadj7a8la86h9yy9lzra5jawy2ig1aa3k81d98"; depends=[GenSA lattice polyclip Rcpp RcppArmadillo]; }; + europepmc = derive2 { name="europepmc"; version="0.3"; sha256="1ngqs1sqzkbwv98dd5z4cxj8bnz41wyd0g060a2vpqi3s99s4i2h"; depends=[dplyr httr jsonlite plyr progress purrr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; - eurostat = derive2 { name="eurostat"; version="3.1.5"; sha256="128rlkkxdpl95wjxnrw8yzxpc6sml0vaghnaz0ra90ak1s43ndda"; depends=[classInt httr jsonlite RColorBrewer readr sp stringi stringr tibble tidyr]; }; + eurostat = derive2 { name="eurostat"; version="3.2.1"; sha256="1934lzxzs0l96c3bwwy5lpgm8kxrd55hdcmbn4prg2pzzj32wxfv"; depends=[broom classInt curl dplyr httr jsonlite RColorBrewer readr sf sp stringi stringr tibble tidyr]; }; eva = derive2 { name="eva"; version="0.2.4"; sha256="03jsiz6bkavwxpgllxaw8czahmm2rh5h8hhk5j7i9clcjx244vvj"; depends=[EnvStats Matrix]; }; evaluate = derive2 { name="evaluate"; version="0.10.1"; sha256="070vvmnbdlp7sz2zhza7fhd2a6mlwiln8fn4hyzhsiizbn4n79y9"; depends=[stringr]; }; - evaluator = derive2 { name="evaluator"; version="0.2.3"; sha256="1qlrrd68j622i2n0wazz3m44sc2l7hsg7fd1mc204c7pmfb6a3pl"; depends=[dplyr extrafont ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; }; + evaluator = derive2 { name="evaluator"; version="0.3.0"; sha256="1dgihzai2p47zjfjb4wnl5rvwahfsxcaqaywdsf039p0g820nr8f"; depends=[dplyr extrafont furrr ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="1.0.3"; sha256="0cd0a8w0ixd9ilcqlxiaql4l2r49qrqnllb9qpg3xgnlxka3yb5m"; depends=[FNN limSolve Matrix R_utils]; }; - evd = derive2 { name="evd"; version="2.3-2"; sha256="0n81plbw2p83c10y6a6hvqkxcbfqjdc41p02zyklbcafga1m4gdy"; depends=[]; }; + evd = derive2 { name="evd"; version="2.3-3"; sha256="1d2r8ppblxrq6s60pf0gv4rp8ja58j8lbpax8a996ais1hpfzi9g"; depends=[]; }; evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; }; - event = derive2 { name="event"; version="1.1.0"; sha256="1nq34bz9dsixidym3n255vmap3gjx9nfk8pc5s7w026faf96dr2v"; depends=[rmutil]; }; + event = derive2 { name="event"; version="1.1.1"; sha256="0w3v8j61y7vr0cjl8a1rkvi4pyjlfhmzzn1n4dgkivac4iafzqjj"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; eventdataR = derive2 { name="eventdataR"; version="0.2.0"; sha256="11apbbj68x1kxpwvihf4ng7wxy54jl1aw7r9hyq6gn7h8sk6lpjn"; depends=[]; }; events = derive2 { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; }; - eventstudies = derive2 { name="eventstudies"; version="1.2"; sha256="0z449j7yrd6j6hhacz6f048ibilib6m97684cz2wc4pqq2wlj8hg"; depends=[boot sandwich testthat xts zoo]; }; - evidence = derive2 { name="evidence"; version="0.8.9"; sha256="173fjmpizjmrp0qh08k2qllvjm4l53ykblfri984x9kh68aqfvnz"; depends=[LaplacesDemon lattice LearnBayes loo rstan rstanarm]; }; + evidence = derive2 { name="evidence"; version="0.8.10"; sha256="02kqk95kx4nv13fg6z55a5rv6sq6lv8azg0jjxbkg1j6hg15p7ai"; depends=[LaplacesDemon lattice LearnBayes loo rstan rstanarm]; }; evidenceFactors = derive2 { name="evidenceFactors"; version="1.00"; sha256="12wndimbygn7h57f3q0xmxmvqrcdj98f0a58m22z2l0vmym53rhb"; depends=[sensitivitymv]; }; evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; }; - evmix = derive2 { name="evmix"; version="2.10"; sha256="0q2jcd4r9ndl8c8w4g75cv5g9f58ix6ndwa99lgslw2j0ckh0z97"; depends=[gsl MASS SparseM]; }; + evmix = derive2 { name="evmix"; version="2.11"; sha256="15ak02vfhf54b5r9savf1lmcyf6mfwashr00z913nw2aajswny1h"; depends=[gsl MASS SparseM]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; evolqg = derive2 { name="evolqg"; version="0.2-5"; sha256="11n0gxkxhg1d2ziwbipqvyccgnsrzm3mk4xy2d7nxn662q1yl2ah"; depends=[ape coda expm ggplot2 igraph Matrix matrixcalc MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; }; evoper = derive2 { name="evoper"; version="0.4.0"; sha256="11l55jj7f4ggwvimvl3d2sv2nyds29bl4dai6ycpgnff7wwdv43g"; depends=[boot deSolve futile_logger ggplot2 plot3D plyr reshape rrepast]; }; evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; - evtree = derive2 { name="evtree"; version="1.0-6"; sha256="0nvk78haghvp6vw6936di0bd5gfv603nxzgw3i647i68291wav0f"; depends=[partykit]; }; + evtree = derive2 { name="evtree"; version="1.0-7"; sha256="1swq4cmx7hvsagn1nfavay5rg5r5axjxpcckvd3sy6lgvwvflcnq"; depends=[partykit]; }; ewoc = derive2 { name="ewoc"; version="0.2.0"; sha256="0kanx14fhcbqz6gpyj7628vgy9fwz3ji5mkd4107b8pgpz2hkg00"; depends=[coda doParallel foreach Formula ggplot2 rjags]; }; exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; }; exact2x2 = derive2 { name="exact2x2"; version="1.6.2"; sha256="172g6ahgd7j42bjidp6svjl70ws3bz58vb8vxgnalii6awcizkcm"; depends=[exactci ssanv]; }; @@ -6189,46 +6256,47 @@ in with self; { exactRankTests = derive2 { name="exactRankTests"; version="0.8-29"; sha256="0sj4bf0sab2rsgh967i5jl7ml2l1niydqmyn7c6ybai1gavsdpi1"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.3-3"; sha256="03r35f6dyrck5pf43ypb1sjwfnvkhjkm1mbms3wh67ayfs2ypn0s"; depends=[ssanv]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; - exampletestr = derive2 { name="exampletestr"; version="1.2.0"; sha256="05p819a6s6anxjqvs10df9kcfdg7lkg1205iw635db9g6biplrb7"; depends=[checkmate devtools filesstrings magrittr purrr readr roxygen2 stringr styler]; }; - exams = derive2 { name="exams"; version="2.3-0"; sha256="0y21cx6knx253gka1bib8z0jmyndl4k7c2d8hfh3rwn5bdqyqj53"; depends=[]; }; - excerptr = derive2 { name="excerptr"; version="1.4.0"; sha256="0z69lqfdm2dh9z6rqhfnj6f4b2p6sgmlvcxasg49wd0qasx86ph6"; depends=[git2r rprojroot rPython]; }; + exampletestr = derive2 { name="exampletestr"; version="1.3.0"; sha256="1z4lw115y5ijjb603rvy63a5gvhgymkq00ak0z6da2y5p6ym5rp3"; depends=[checkmate devtools filesstrings magrittr ore purrr readr roxygen2 rprojroot stringr styler]; }; + exams = derive2 { name="exams"; version="2.3-1"; sha256="0xg2rvfw61q5g9aj828219fqdnrwhy698xy7mkrcaly9mq95zs8b"; depends=[]; }; + excerptr = derive2 { name="excerptr"; version="1.4.1"; sha256="0z5gayf7kkhdg7ad2w4ycar5dd42jdjybrhzfmkqb3xr9pdrnijg"; depends=[git2r rprojroot rPython]; }; excursions = derive2 { name="excursions"; version="2.3.3"; sha256="16clwp76hq1q3m7ixjq1rv83vagxyj2fcs4jdsgvl9pzh5syzd3x"; depends=[Matrix sp]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.2.1"; sha256="0969ip7vwhs3r9zwy5l1gqg886yl4gfw8ss2frnq9nmqpn1ib1v2"; depends=[curl dplyr jsonlite purrr tibble]; }; exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; - expands = derive2 { name="expands"; version="2.1.1"; sha256="1ajfj5vsqal642avshjfmv0f5vi0ca3whhw5cxmpm013yckb3b3r"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; }; - experiment = derive2 { name="experiment"; version="1.1-3"; sha256="0gxf6bbx06ynz96mwcb9wdb8pb0njvjnpigjc1vq5ammc3l6dkxz"; depends=[boot MASS]; }; + expands = derive2 { name="expands"; version="2.1.2"; sha256="15r5wld63kwk3kcl5x09dj0n1mgcl076lcjsmf0vbh10x4n0avrk"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; }; + experiment = derive2 { name="experiment"; version="1.1-4"; sha256="08d9m72l6n2ygy5x8aakzv3n71ybqy1i8yzv55f7r4w1kk4pbk5i"; depends=[boot MASS]; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; }; - expint = derive2 { name="expint"; version="0.1-4"; sha256="17vp7znbxlf5zb944snmnml2w42avj9k70fisb8az047i3kdbvfh"; depends=[]; }; + expint = derive2 { name="expint"; version="0.1-5"; sha256="12ki8j17p070kq2mdzzai755wy1n6kvinax0ldd63kynij9n0gdh"; depends=[]; }; explor = derive2 { name="explor"; version="0.3.3"; sha256="1b3swb7ikp2ik3300ljg2rll5gka4l4lfg95bqbgap3ph4dclv7y"; depends=[dplyr DT ggplot2 highr scatterD3 shiny tidyr]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; expm = derive2 { name="expm"; version="0.999-2"; sha256="1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q"; depends=[Matrix]; }; - expoRkit = derive2 { name="expoRkit"; version="0.9"; sha256="0raf0m2nfbdbd1pc4lincyp8y8lgn3bfi4hn0p04plc5p40l1gvc"; depends=[Matrix SparseM]; }; + expoRkit = derive2 { name="expoRkit"; version="0.9.2"; sha256="0qlzz86cyfz2yyynz8bj28086d1pc93gvjy1idip80m7z6vsrsxq"; depends=[Matrix SparseM]; }; expoTree = derive2 { name="expoTree"; version="1.0.1"; sha256="0hj1x4niqp0ghqik3mz733nc3zpnhyknrdpzpj6y2rfia2ysdiz8"; depends=[ape deSolve]; }; - expp = derive2 { name="expp"; version="1.1"; sha256="13zbhkkcshqrpln5gsa051d390q9ij97lawsdbd5j7fj9hxm9pwh"; depends=[deldir rgeos sp spdep]; }; - exprso = derive2 { name="exprso"; version="0.2.7"; sha256="0s8vf1rn7mwsiypd3k8diki5brlx95rzsqikprg9j9difv03f976"; depends=[cluster e1071 kernlab lattice MASS nnet plyr randomForest ROCR sampling]; }; + expp = derive2 { name="expp"; version="1.2.2"; sha256="0xr24xzplgamj8dkjk9n9jmrbyw056z57hkm9h4j43g63vxrinlj"; depends=[deldir rgeos sp spatstat spdep]; }; + exprso = derive2 { name="exprso"; version="0.3.6"; sha256="0df3c79iscgrdj14d82vibsxz85zb99j55b3r6jw0zqs5czd8rhd"; depends=[cluster e1071 frbs gtools kernlab lattice MASS nnet plyr randomForest ROCR rpart sampling]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; - expss = derive2 { name="expss"; version="0.8.6"; sha256="0yzbgmqblbxk494yhrs3mnr2jgsxvybamdbwc5w2w389baa78wny"; depends=[data_table foreign htmlTable magrittr matrixStats]; }; + expss = derive2 { name="expss"; version="0.8.7"; sha256="1p0jzqbjagx00qwjhsjyvmqijlp33qjhj7k9b8rddibvg9ysmcji"; depends=[data_table foreign htmlTable magrittr matrixStats]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; - extRemes = derive2 { name="extRemes"; version="2.0-8"; sha256="0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"; depends=[car distillery Lmoments]; }; + extRemes = derive2 { name="extRemes"; version="2.0-9"; sha256="0cpvcajk9xyy7662nqkyx333vrxpwsc5nmv0bfnhsbgijz5y0hvm"; depends=[car distillery Lmoments]; }; extWeibQuant = derive2 { name="extWeibQuant"; version="1.1"; sha256="08dzw5xfgqx0c7ac632c5mg5jmjjw7wwpcr4c9lvz5rv72ykh2rh"; depends=[]; }; extdplyr = derive2 { name="extdplyr"; version="0.1.4"; sha256="0rxwpspn3905f4l27cwgi9rlj379hb6b4kkb0kjq8gzpkg2fznh1"; depends=[dplyr lazyeval tidyr]; }; exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; }; - extraDistr = derive2 { name="extraDistr"; version="1.8.8"; sha256="0ywn4qwnamv36l1hw27l9y5kh3v6ha5781wsv2bz6szqjgg7kdb3"; depends=[Rcpp]; }; + extraDistr = derive2 { name="extraDistr"; version="1.8.9"; sha256="1fg8vjpal33y51iqzglk1yvy46d7js0l0wfbdy698lq8a06hq19p"; depends=[Rcpp]; }; extraTrees = derive2 { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; }; - extracat = derive2 { name="extracat"; version="1.7-4"; sha256="1dply8sx9r9vshi5dycxs7bchf5g33qbq7w6i5w830glfy0lk3i5"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; }; + extracat = derive2 { name="extracat"; version="1.7-5"; sha256="1jj3mkn7s0m4dhnbrqhhxx6k2macmjjrmd7v7rqb5wivj5g7b89v"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; }; extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extremeStat = derive2 { name="extremeStat"; version="1.4.0"; sha256="0fvkvlm47ri05w9h5qa937ijsc5lg51jc825wq9pmn7aiv58yxzm"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; extremefit = derive2 { name="extremefit"; version="0.2.3"; sha256="1m2960qbs2qha4975sq5awsvlk10s1mgb3cm91fyrm6lh50plv5m"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.2"; sha256="0pyngxljdnjwnbwcb0gmxcirv70r1s1wyq4m1wm5rprpdj8v9xil"; depends=[gWidgets gWidgetstcltk]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; + exuber = derive2 { name="exuber"; version="0.1.0"; sha256="0jm0kxw7f4pzy162alp0q9kxgyrg2qllhxl7ijaq5qx4wnyhab3m"; depends=[doParallel dplyr foreach ggplot2 purrr Rcpp rlang]; }; eyelinker = derive2 { name="eyelinker"; version="0.1"; sha256="1lwpm247czqm26zvv5c6lkhdxpp4svszfw74g9ys9vwvwhry9c15"; depends=[intervals magrittr plyr readr stringi stringr]; }; eyetracking = derive2 { name="eyetracking"; version="1.1"; sha256="0ajas96s25hjp3yrg42hp78qjhl1aih04mjirkskx32qsyq5hfpv"; depends=[]; }; eyetrackingR = derive2 { name="eyetrackingR"; version="0.1.7"; sha256="1an39l4bkbw7s75y1pjgdwhixshdaawpy4kwyaqk7jkhhy7nl1nh"; depends=[broom dplyr ggplot2 lazyeval purrr tidyr zoo]; }; @@ -6239,7 +6307,6 @@ in with self; { ezsim = derive2 { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[digest foreach ggplot2 Jmisc plyr reshape]; }; ezsummary = derive2 { name="ezsummary"; version="0.2.1"; sha256="16rwg1h7gs7mnkmbwfb273fy1pwdq9ng6l4ad00anpmilqcck5ng"; depends=[dplyr tidyr]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.5-1"; sha256="034m2mmm6wmsjd41sg82m9ppqjf4b1kgw5vl2w7kzqfx0lypaiwv"; depends=[]; }; - fArma = derive2 { name="fArma"; version="3042.81"; sha256="1m27lkw17g6mmrc52y0labif8gdyacvw2lgdmwnb01vyrkghqy20"; depends=[fBasics timeDate timeSeries]; }; fAsianOptions = derive2 { name="fAsianOptions"; version="3042.82"; sha256="13p1r93rgnf03wj0kkfpw4w4dlzd1ypkam50xqpjfm38qm4zvkds"; depends=[fBasics fOptions timeDate timeSeries]; }; fAssets = derive2 { name="fAssets"; version="3042.84"; sha256="0aj3gjd54ajviikwh075bympw7dx2dcsgj5p8j96vx2qbbwjmgvb"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; fBasics = derive2 { name="fBasics"; version="3042.89"; sha256="0x6s6js52sz0rv3y66ax1bkf4mn9ihjmkyrm5clf7ymw5hvd5f5q"; depends=[gss MASS spatial stabledist timeDate timeSeries]; }; @@ -6247,7 +6314,7 @@ in with self; { fCertificates = derive2 { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; }; fChange = derive2 { name="fChange"; version="0.1.0"; sha256="1pj4q9dsqqgv198kfv410qkpgynhd580bcsigmak598m5jx3rf7l"; depends=[fda lattice reshape2 sandwich sde]; }; fCopulae = derive2 { name="fCopulae"; version="3042.82"; sha256="10wknqrrs5j63v7qnp5qmk85688r36vli4r99i49y2i2nv10yp5r"; depends=[fBasics fMultivar timeDate timeSeries]; }; - fDMA = derive2 { name="fDMA"; version="2.2.3"; sha256="17c9qm32pmbn236ynkkk0z4fdfyij3h1kx7y2i9x3m5q1z7dzwb4"; depends=[doParallel foreach forecast gplots iterators MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; }; + fDMA = derive2 { name="fDMA"; version="2.2.3.1"; sha256="0lkidcc9r3psngdn60wk5zk6k32qxgklcrk23jhf88qnrfqbasw4"; depends=[doParallel foreach forecast gplots iterators MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; }; fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; }; fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[fCertificates Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3042.82"; sha256="1n0afql4csgsqf7j9x2v8yxncvpknms643l9knm0fqb4pdbaw58c"; depends=[fBasics fGarch timeDate timeSeries]; }; @@ -6266,6 +6333,7 @@ in with self; { fabricatr = derive2 { name="fabricatr"; version="0.4.0"; sha256="0z04n2n44anpci8m4m5hs83nwhiczil7lkg8glcgngrdh994k8hc"; depends=[rlang]; }; face = derive2 { name="face"; version="0.1-4"; sha256="0kkgblxzhjzifxnym6g5psiwvfgydk1scqbxraldklm8c4a12zc3"; depends=[Matrix matrixcalc mgcv refund]; }; facebook_S4 = derive2 { name="facebook.S4"; version="1.1.0"; sha256="1if3fgyvj6pbf48yjwa5fkn3s4rl6kj9s1nk6dwphykhx72ghzrj"; depends=[httr magrittr plyr rjson]; }; + facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; }; factoextra = derive2 { name="factoextra"; version="1.0.5"; sha256="1l6m8k7qhdw8ndar8nhmym0lfyd1i2iszl1cicjax0vq23ss6xw1"; depends=[abind cluster dendextend FactoMineR ggplot2 ggpubr ggrepel reshape2 tidyr]; }; factoptd = derive2 { name="factoptd"; version="1.0.3"; sha256="1ir50im3kr1xhqk4qwrm2h5fq9gqgrwshbamvjlf8n1wnn03mcb6"; depends=[MASS partitions]; }; @@ -6285,33 +6353,32 @@ in with self; { famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; fame = derive2 { name="fame"; version="2.21"; sha256="15pcgc67qcg6qkgssbfissicic317v60jsybp86ryqvzqg70cqx3"; depends=[tis]; }; fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; - fancycut = derive2 { name="fancycut"; version="0.1.1"; sha256="1vnxn5zl1j8209dyrwq3919hivab09f0jq4v9h7v0wlqk1hy5ich"; depends=[]; }; + fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.4.8"; sha256="1da7yskh2gn4arrrnalkl3izqyyrm0yf0il4v2izs7di7qlw3m6v"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="3.4.1"; sha256="1xj1hdz3i9c9wdx7ryiqag69khh3544v4474ilxxiyahxg2r6m45"; depends=[]; }; - fansi = derive2 { name="fansi"; version="0.2.2"; sha256="1kjbklr24n649k17mgcxsrw8lsj4c2yd94yg1rilsnlqcyjdvpvi"; depends=[]; }; + fansi = derive2 { name="fansi"; version="0.2.3"; sha256="1jcnzl8qdav5niv52xa1r8jp5c4wsnhsddjlnrc2ss76pzwgwvfv"; depends=[]; }; faoutlier = derive2 { name="faoutlier"; version="0.7.2"; sha256="0h2azbkxpz03qjmq558mh7dkpv87vbvminvg69wqsx21m6hdl5r3"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; }; far = derive2 { name="far"; version="0.6-5"; sha256="18lj2mgnn9s59ypkr19zzv0sffwpx9mgk975xmpvw4kkl84dykis"; depends=[nlme]; }; faraway = derive2 { name="faraway"; version="1.0.7"; sha256="0lalf52y9rb4zdb4kpscwddb4zy0af7r5sm7lx8s9jaqykrwrfq6"; depends=[lme4 nlme]; }; farff = derive2 { name="farff"; version="1.0"; sha256="1w3mi0vsw7mpqznaf3rnzf7va7ax07n5rrpm2hnjh0q25lsv55hk"; depends=[BBmisc checkmate readr stringi]; }; - farsi = derive2 { name="farsi"; version="1.0"; sha256="0y14f86bccwjirdx33383wa605y7l7lr0w7ygvg8r7f7izkv7r3n"; depends=[]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fast = derive2 { name="fast"; version="0.64"; sha256="098rk6kszdx3szcwvwzcv7zlcd6qvqvbqch7q8ilas6vbki81ba4"; depends=[zoo]; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; - fastDummies = derive2 { name="fastDummies"; version="1.1.0"; sha256="0ns1279sxfiv5ll4faag36ldc5v40l48li36kqr1bb09s3sx9p9w"; depends=[data_table tibble]; }; + fastDummies = derive2 { name="fastDummies"; version="1.2.0"; sha256="0w7764b64isvlimly06i46hk1rspd3bjrqi2f2gafcwz5lk2jc3s"; depends=[data_table tibble]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp]; }; fastGraph = derive2 { name="fastGraph"; version="1.1"; sha256="1vbi5yssnh8hcbmrq1r437vpvj8hqd3vc8wmcy0nbyvnmyjaxkvb"; depends=[]; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; fastICA = derive2 { name="fastICA"; version="1.2-1"; sha256="108z2ymby5y4h8l4l2krqwm28rya93gq09yylgilnm3afvfrfabg"; depends=[]; }; fastJT = derive2 { name="fastJT"; version="1.0.4"; sha256="1pa4qpcf4qmzk6s8qgk60n5ialz8gcj5m8d7xr10cmn4jfwghc7b"; depends=[Rcpp]; }; - fastLink = derive2 { name="fastLink"; version="0.3.1"; sha256="0d77z88vv8gw1hp3cpnx481yn7p5y4nq3qzsv63bifad0msnqixy"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; - fastM = derive2 { name="fastM"; version="0.0-3"; sha256="1gyrkci6iv7j4aymy2qlwjshmigiff5x7kqjsh1yjzd43jg9ij86"; depends=[Rcpp RcppArmadillo]; }; + fastLink = derive2 { name="fastLink"; version="0.4.0"; sha256="0cqrg6fj7ylxf5brwmdsv7wrak8b395yszdy1cz3q87r3ayi02cq"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; + fastM = derive2 { name="fastM"; version="0.0-4"; sha256="1n9a431w0hl4kr3pa32kcyd1d73acz4vb9vhfkckk3099mg46d9m"; depends=[Rcpp RcppArmadillo]; }; fastR = derive2 { name="fastR"; version="0.10.3"; sha256="1sz6krxiamq3rp4h9ah2b1zvyyrlvsn7lpvrjv1xda2c1kqqkvmk"; depends=[lattice mosaic mosaicCalc mosaicData]; }; - fastR2 = derive2 { name="fastR2"; version="0.2.0"; sha256="1xwa4v0j2n0qxn1prhc9x0sz53fhsfbg2m1a6kfdp7cpvvk46pw5"; depends=[dplyr ggformula ggplot2 lattice magrittr maxLik miscTools mosaic numDeriv]; }; + fastR2 = derive2 { name="fastR2"; version="1.1.0"; sha256="145gkz777zx80bxx1zwwj4diswl6yf2v02wgfpy3rvk2q225f1id"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.0"; sha256="1x4kxys7mxlxz7cfbjig44za8m8p19xgzcs5y2wn9320sx8b0wc0"; depends=[]; }; fastTextR = derive2 { name="fastTextR"; version="1.0"; sha256="0l0f9jvsa68a3vd6mwbhsqd12729nd6nwsnlzrhsg9wj9rx8kpmi"; depends=[Rcpp]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; - fastcluster = derive2 { name="fastcluster"; version="1.1.24"; sha256="15drhl22wm8whsy6b3vv754skfddiydb068zn1whrw5sknvkkjc2"; depends=[]; }; + fastcluster = derive2 { name="fastcluster"; version="1.1.25"; sha256="01a2xnhhvv1swd4g8p4lzyn7ww7kg49jlnzc7kfz60jqjzpisrpk"; depends=[]; }; fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; @@ -6319,18 +6386,18 @@ in with self; { fasterize = derive2 { name="fasterize"; version="1.0.0"; sha256="0q8n1r5n06yr6vmnwrdajx8923646bzm7ywgn2f0zxl214plf56s"; depends=[raster Rcpp RcppArmadillo sp]; }; fastmaRching = derive2 { name="fastmaRching"; version="1.1.0"; sha256="085xr5i6h6vwl1flzbkwqsm8d815s0p02p0mir60jqjvy0s7haip"; depends=[raster rgdal sp]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; - fastnet = derive2 { name="fastnet"; version="0.1.4"; sha256="0hc18yc2cmvb5v8vjj1xvnciz35hyfp9iyqhkg9jfjrlf89icny6"; depends=[doParallel foreach igraph tidygraph]; }; + fastnet = derive2 { name="fastnet"; version="0.1.5"; sha256="0l14ahrk4p5ils5rqwkj25f7xxhjqxpibgcy942c6pyc33rbsbcl"; depends=[doParallel foreach igraph tidygraph]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; fastqcr = derive2 { name="fastqcr"; version="0.1.0"; sha256="0hzlp66as7k0bh3biqkngacpkq1hi3y3gp6wg4c5476ywzm83gra"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; fastrtext = derive2 { name="fastrtext"; version="0.2.5"; sha256="0zbd2sxzarxic90d2pkbn7fak5gyb81b180m91f784smb3sx1p1j"; depends=[assertthat Rcpp]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; - fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.2"; sha256="1xqr4azc5gsr7kcm8qzwjpjy72w1b111i61wbm35vns9r38a6cxz"; depends=[kinship2 multgee]; }; + fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.3"; sha256="00pnzr3v7vm965b3cvgplasw00akmixybvm6l9bn609c2kqbf5p3"; depends=[kinship2 multgee]; }; fauxpas = derive2 { name="fauxpas"; version="0.2.0"; sha256="0l77gxcf06p984z9vgaf1kag609h9qyrgav84lxkv97h6f3fflnc"; depends=[httpcode R6 whisker]; }; favnums = derive2 { name="favnums"; version="1.0.0"; sha256="0siax7gjr25lpf1li3hawx6nviggs68c0lap2d9i38azlhvj891w"; depends=[]; }; fbRads = derive2 { name="fbRads"; version="0.2"; sha256="1a65gfvizzm6psspcvlhkxligdf9j1whrgzkg7ww520lk3z8lnnd"; depends=[bit64 data_table digest futile_logger jsonlite plyr RCurl]; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; }; fbar = derive2 { name="fbar"; version="0.4.3"; sha256="1raq8ak01gcnmcsaa3fdfqi40d67v7nfjr212jzvq7wp2qk3j10i"; depends=[assertthat dplyr magrittr Matrix purrr rlang ROI ROI_plugin_ecos stringr tibble tidyr]; }; - fbati = derive2 { name="fbati"; version="1.0-1.1"; sha256="18k8a1m2znzzwmm25dbqnqzwbjxqz4rbjaw3z9affky7lzqgbg6l"; depends=[fgui pbatR rootSolve]; }; + fbati = derive2 { name="fbati"; version="1.0-3"; sha256="03a48sndphxrm4bmk0qx0lxnk4akkdpbvldq9dcnf9hxxmrfivh4"; depends=[fgui pbatR rootSolve]; }; fbroc = derive2 { name="fbroc"; version="0.4.0"; sha256="0bxi027iqqn50mn5nrlgx3z4qdlfkrq88s0dqyaxdl8rsrwp3d2w"; depends=[ggplot2 Rcpp]; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; fclust = derive2 { name="fclust"; version="1.1.3"; sha256="1wpdvpfama90x8rj5yv54q7k318ad4y6pi33vsyh0rsb3fdrkqkr"; depends=[]; }; @@ -6339,7 +6406,7 @@ in with self; { fcros = derive2 { name="fcros"; version="1.5.6"; sha256="0n1zbzl6g9k3smdpgyb3xsa2w8ir4bdagv7w644x1jck5rd0xn2j"; depends=[]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; fdANOVA = derive2 { name="fdANOVA"; version="0.1.1"; sha256="16i0mnbxyjbw06havl277c6vi7mq5rak9cjzp8c2zvr8cakalkg4"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; - fda = derive2 { name="fda"; version="2.4.7"; sha256="0371c32kxxvfdh18ldgc2p76dr2436ay0n9prdjwm9v0azp4rp9k"; depends=[Matrix]; }; + fda = derive2 { name="fda"; version="2.4.8"; sha256="0n39rzbhg1hipzn51rzmbchn2358qgapg08iv7lmiqj5y7i9qns2"; depends=[Matrix]; }; fda_usc = derive2 { name="fda.usc"; version="1.4.0"; sha256="0gp19c5lxp0g4690vdr0gpw89rl9v3l6872mf7hr8nsyyd6776vn"; depends=[fda MASS mgcv nlme rpart]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.5"; sha256="1k2b3z2jj37j6njvxalg8640zlcvi1cm7wkcwp0pia21wydz75ip"; depends=[Formula Rcpp RcppArmadillo]; }; fdaPDE = derive2 { name="fdaPDE"; version="0.1-4"; sha256="0n72x5h00n17yxjniim2qxz2phy1srk04dn6ivvc58k3x252fzkh"; depends=[RcppEigen rgl]; }; @@ -6369,38 +6436,37 @@ in with self; { fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; fergm = derive2 { name="fergm"; version="0.2.1"; sha256="14asdvr98nh6rayqff9xda54w95bjg4g2f72a21rhyc932d7589g"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan statnet stringr]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; - fetchR = derive2 { name="fetchR"; version="2.1-0"; sha256="1rrmky1wg2wz4m8nmvdxwbs4yxnwgdchddvh1dhp171364as3536"; depends=[plotKML rgdal rgeos sp]; }; - ff = derive2 { name="ff"; version="2.2-13"; sha256="1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"; depends=[bit]; }; + fetchR = derive2 { name="fetchR"; version="2.1-1"; sha256="0i5k40i7ryfbk1l4nn0k5hnmzhhp6970ns1j82hnih7kmdl4rlwj"; depends=[plotKML rgdal rgeos sp]; }; + ff = derive2 { name="ff"; version="2.2-14"; sha256="1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.12.3"; sha256="1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"; depends=[bit fastmatch ff]; }; ffmanova = derive2 { name="ffmanova"; version="0.2-2"; sha256="0sw8br73mx552m4b5zi4qgjcrwxflmgsnvs4mlnxh8g2gaf5bx4j"; depends=[]; }; - ffstream = derive2 { name="ffstream"; version="0.1.5"; sha256="1q07b1wdyhbvn3784lwwz3jk591cz1rv1jnf36q1piscsb3v7ayk"; depends=[Rcpp]; }; + ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-4"; sha256="0172kpxzjx8239r2jbcqqbpcpqygrxk36a2kmh00f73mrq0kjhc0"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-8"; sha256="1nqvpzda281rxi1cmwajxxsn3sc3gz7scv8bvs5jm34kf36whha6"; depends=[]; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; }; fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; }; fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; }; - fgui = derive2 { name="fgui"; version="1.0-5"; sha256="0gzwxzvf2y9p5rlfk862d7l1dm2sdwjhjpcb8p494cj4g1xshazg"; depends=[]; }; + fgui = derive2 { name="fgui"; version="1.0-8"; sha256="024fzd1c7iwqprn26hwjb9l2qlvvyzl449d7iixy0x69djwsrysv"; depends=[]; }; fields = derive2 { name="fields"; version="9.6"; sha256="1v7z48a8jmdcil28rj8c3455k6rssr5v9qi6dyhhpbb193bj8121"; depends=[maps spam]; }; fiery = derive2 { name="fiery"; version="1.1.0"; sha256="0251vfr7b8r4xjgcf8gyh1ddj0lj73fl0pim0k3vpzva5wmwigs1"; depends=[assertthat crayon desc future glue httpuv later R6 reqres stringi uuid]; }; - fifer = derive2 { name="fifer"; version="1.1"; sha256="1gcv8ns4c1y3pjmixdm16raa5h6jqmc3i4m37ahj97l720j1f2ya"; depends=[fields Hmisc MASS party plotrix randomForest randomForestSRC rpart xtable]; }; fiftystater = derive2 { name="fiftystater"; version="1.0.1"; sha256="1nri9vsqif03xrmm3g5llasqm49hj169mgv046f2l0mh9vp0fqpc"; depends=[]; }; filehash = derive2 { name="filehash"; version="2.4-1"; sha256="1x7an7rsy5pz2qr86m511rsv297vacxwk3y1a71754yq739qgq6h"; depends=[]; }; filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; filelock = derive2 { name="filelock"; version="1.0.1"; sha256="11mmq296zg62gnxjk7dyr866kihihmsjpfg6bcc7hv6ivh4812nn"; depends=[]; }; filematrix = derive2 { name="filematrix"; version="1.3"; sha256="1v3aj1ng742msb0sfdnjsbqb508mqjf8jlq2v33vxldhradw5w0b"; depends=[]; }; - filenamer = derive2 { name="filenamer"; version="0.2.2"; sha256="0289qpy4891fb71fa4bhc8wp4g7n1sw1kis5k5irdyyzmsa9dfhn"; depends=[]; }; + filenamer = derive2 { name="filenamer"; version="0.2.3"; sha256="19gavhh5q7dziv0yc000w06qp58wk2cm52cxjl33p1q4cjk6gg3m"; depends=[]; }; fileplyr = derive2 { name="fileplyr"; version="0.2.0"; sha256="15rxls0njd6j2vxdahf4fx2nxmsa3rc41812v3wlaqas99naaxxr"; depends=[assertthat datadr tibble]; }; files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; - filesstrings = derive2 { name="filesstrings"; version="2.2.0"; sha256="1qix25k0j1d1q3z5xiq9gc928kbb78w0j9083q5xsdik840d91kj"; depends=[BH checkmate magrittr matrixStats ore purrr Rcpp stringr tibble]; }; + filesstrings = derive2 { name="filesstrings"; version="2.5.0"; sha256="04axsnk1912h1i6b2qp9cxxs5jd1vkwgxzg2kjw43gnm36a7188w"; depends=[checkmate magrittr matrixStats ore purrr Rcpp rlang stringr tibble]; }; filling = derive2 { name="filling"; version="0.1.0"; sha256="0avlfl06nd8wn76ydii09ng2fqp92d4n9v2y5vg16m3my58l0srd"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; - financial = derive2 { name="financial"; version="0.2"; sha256="1v6jgs3rq57byin5mynslfjk3zrx91qz36558nn17mv6z0qsf10v"; depends=[]; }; + finalfit = derive2 { name="finalfit"; version="0.7.8"; sha256="1jkmagr512h5vvlqyszi6zihpzbmam571bgks5js0d3wbhjs9j38"; depends=[ggplot2 gridExtra Hmisc lme4 magrittr mice plyr pROC scales stringr survival survminer]; }; finch = derive2 { name="finch"; version="0.2.0"; sha256="1vganbkz2d96xfz2jf1q0kqarc575w3nswss2igynsbbd0y53mjm"; depends=[data_table digest EML hoardr plyr rappdirs xml2]; }; findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; findpython = derive2 { name="findpython"; version="1.0.3"; sha256="1y08jk2ffmkf9zpwiz2xymjhfwqvls9vzsnq62v278ghw9d571jl"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; fingerPro = derive2 { name="fingerPro"; version="1.0"; sha256="17r23x8cdllr8slk56dsmrwc4ns69b3cqy59mxxbsjnhjl3di6x8"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL reshape rgl scales]; }; fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; - fingertipsR = derive2 { name="fingertipsR"; version="0.1.5"; sha256="0g1r2mrivnfv7icba1y9lx5h2a3swmd41ry2064n82l05iaw9wsp"; depends=[dplyr DT httr jsonlite miniUI purrr readr shiny shinycssloaders]; }; + fingertipsR = derive2 { name="fingertipsR"; version="0.1.8"; sha256="168z59y2mqz53qhzavzynh6y11d453dd6j5928ahg6x24hjz6d4w"; depends=[curl dplyr DT httr jsonlite miniUI purrr readr shiny shinycssloaders]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finreportr = derive2 { name="finreportr"; version="1.0.1"; sha256="1mansiyl4p4zqc1h2aw9zgzb3fy4mppgmshdm8mcf4nbm340g4vk"; depends=[curl dplyr httr rvest XBRL xml2]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; @@ -6411,7 +6477,7 @@ in with self; { fishmove = derive2 { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[boot ggplot2 MASS plyr]; }; fit_models = derive2 { name="fit.models"; version="0.5-14"; sha256="0vjbzmx0ambm6yzidb4vbgmhclwzwv2iz2cwl54ccdkvx4cx3fck"; depends=[lattice]; }; fit4NM = derive2 { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; }; - fitDRC = derive2 { name="fitDRC"; version="1.1"; sha256="1f6avw8ia9ks17zdagpmh6yvcmi53h5cvm0wwv9hsb92x5zfhxn9"; depends=[]; }; + fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; }; fitODBOD = derive2 { name="fitODBOD"; version="1.1.0"; sha256="15ylldlq12mrw06pzww54hsl8nb9krs5w1cgh037km9sndsswvji"; depends=[hypergeo]; }; fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; }; fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; @@ -6423,7 +6489,7 @@ in with self; { fitur = derive2 { name="fitur"; version="0.5.25"; sha256="0f33c4mg0257s9c0qldryihaq8p3y07j2nwghjpqhi3rv4mrg2xf"; depends=[actuar e1071 fitdistrplus ggplot2]; }; fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.4.0"; sha256="1sdj5b365hi11dd2yxvg9w3fz3rx9rbv1nnhf5i8v2ydg4kqyrws"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; - fixerapi = derive2 { name="fixerapi"; version="0.1.1"; sha256="0g1bs2d99yv6q6y8kh6s9skkfjany5737kys0yqy8mpflhymvh33"; depends=[jsonlite tibble tidyr]; }; + fixerapi = derive2 { name="fixerapi"; version="0.1.5"; sha256="0mp492n75wh8ws85gh5q9bbq709a78z14pipc8vjxk0fizhxwwdc"; depends=[jsonlite tibble tidyr]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.7"; sha256="1w77smmbrwglayr2rj88b00x7wan9f3x1fq8h6xyhybfvrw7vr0r"; depends=[BBmisc checkmate mlr]; }; flam = derive2 { name="flam"; version="3.2"; sha256="0v6kcl4n7wq052p7jdgbzlh9fpk8bzlrqw12i6pib1wd3slj0asa"; depends=[MASS Rcpp]; }; @@ -6432,10 +6498,11 @@ in with self; { flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; - flexCWM = derive2 { name="flexCWM"; version="1.7"; sha256="0kgvj3l4cscr1p3305mnz42km5i8280wrvxp317dif3pvq7iigi4"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; + flatxml = derive2 { name="flatxml"; version="0.0.1"; sha256="0rg6khx6sgxhmvh3j8m1ady8bya2904n3maynb7393rp9s8jvb9p"; depends=[RCurl xml2]; }; + flexCWM = derive2 { name="flexCWM"; version="1.8"; sha256="0x6rmag3gdlph1xd1xbnfxxzl4rmp4z7zsvagbcwbri21ia29s14"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; flexPM = derive2 { name="flexPM"; version="2.0"; sha256="0h3qs9w9pc2nc24q1diz7j3s93y40ijpmgq2l0xg9mzcgjz9kz8c"; depends=[survival]; }; flexclust = derive2 { name="flexclust"; version="1.3-5"; sha256="19ihdhmhaglccqpvrpc51367gkfafg4jdpabbk0j6mh2n16hi511"; depends=[lattice modeltools]; }; - flexdashboard = derive2 { name="flexdashboard"; version="0.5.1"; sha256="0jb5wswbjr58g121nbvl93p73gxr8cx56kajgpiaw1fis6dsyfyz"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; + flexdashboard = derive2 { name="flexdashboard"; version="0.5.1.1"; sha256="0fy3nbrr67zqgd44r2mc850s5sp0hzfcw3zqs15m8kxzj1aw067x"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; flexmet = derive2 { name="flexmet"; version="1.0.0.0"; sha256="0xhr4i46s3k7a4yz2sd1sphn8wz27xcl580s2kqkr1ifg8941kv8"; depends=[]; }; flexmix = derive2 { name="flexmix"; version="2.3-14"; sha256="0sl4zxh1sb2sr5q7svjw9ihrm219jzn82yrc9d43q6r1b8bpyz43"; depends=[lattice modeltools nnet]; }; flexrsurv = derive2 { name="flexrsurv"; version="1.4.1"; sha256="13jq7yk7rz2148wkf7dv28l79zwdf1gpfkd5khgacb8hl5kml3p0"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis survival]; }; @@ -6458,7 +6525,7 @@ in with self; { flsa = derive2 { name="flsa"; version="1.05"; sha256="07z2b1pnpnimgbzkjgjl2b074pl9mml7nac2p8qvdgv7aj070cmh"; depends=[]; }; fluoSurv = derive2 { name="fluoSurv"; version="1.0.0"; sha256="1dv4lf7k28bih2qqkpy15f7d14ibxk48p3z6sj3dj5yvh25mhv81"; depends=[]; }; flux = derive2 { name="flux"; version="0.3-0"; sha256="0pc9cab2pwrfl0fnz29wp7a398r49hvbi50jp8i2fk2rfvck21a7"; depends=[caTools]; }; - fluxweb = derive2 { name="fluxweb"; version="0.1.0"; sha256="1fwxqm8pn9h0bl1cpvz9rx56zsvxz22la5bj8yrrkbg3m8jdzgvi"; depends=[]; }; + fluxweb = derive2 { name="fluxweb"; version="0.1.1"; sha256="0y05syshj3njzhqjpgs02ils4pzw6vfvny3nng0l9pdp55015b9g"; depends=[]; }; fma = derive2 { name="fma"; version="2.3"; sha256="1z7shh9ng3q7ax22cwg86y79jzz5gbchdny2rppzzm0lkvvyy5pm"; depends=[forecast]; }; fmbasics = derive2 { name="fmbasics"; version="0.3.0"; sha256="1dnf09rgwpc7n7ydlp7r5cwy2fa4vh1h9mbjqzfhk0208kz6jpl0"; depends=[assertthat fmdates lubridate tibble]; }; fmdates = derive2 { name="fmdates"; version="0.1.4"; sha256="1bbcwkh65nf2gak9b81zgg32c5ihwhmai3nc43ayf6ivhqsxw8x0"; depends=[assertthat lubridate]; }; @@ -6471,7 +6538,7 @@ in with self; { foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.0.2"; sha256="17bng0fxjqrlni11vwmghimk0h38mlyjyxizrbs1fycb8khlqh94"; depends=[clisymbols crayon curl httr jsonlite rvest tibble xml2]; }; - fold = derive2 { name="fold"; version="0.2.5"; sha256="1h7vx8saq4mbmylh1zgldm8n17i8waq8fgr5d4q68553xmazws41"; depends=[csv dplyr encode lattice lazyeval magrittr metaplot rlang spec tidyr]; }; + fold = derive2 { name="fold"; version="0.2.6"; sha256="09w157h1r1sgay37240v0f1a5ra97nra7fn4im4v69avpl34yxd2"; depends=[csv dplyr encode lattice lazyeval magrittr metaplot rlang spec tidyr]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; @@ -6479,21 +6546,22 @@ in with self; { fontcm = derive2 { name="fontcm"; version="1.1"; sha256="1z6b4qdgj5vhvjqj90sm1hp0fffi1vxzvq71p0flxybzyb7d15la"; depends=[]; }; fontquiver = derive2 { name="fontquiver"; version="0.2.1"; sha256="0qv3i9hch7cygl9983s3w68wfh5qvym2jkm52pp06p6mq8a1i1wm"; depends=[fontBitstreamVera fontLiberation]; }; foodweb = derive2 { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; }; + foolbox = derive2 { name="foolbox"; version="0.1.0"; sha256="1wqswfsanak9p0hpgbblva4b90pamlq1hcjf4xzwd3awjicsp56y"; depends=[magrittr rlang]; }; forams = derive2 { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; }; forcats = derive2 { name="forcats"; version="0.3.0"; sha256="0mxn1hng43zdjh1v8shd80hrszrqahcpaqxs1s1sif0qxh84d0cm"; depends=[magrittr rlang tibble]; }; foreSIGHT = derive2 { name="foreSIGHT"; version="0.9.2"; sha256="1wr99jq8a0cbc7n5sdzr0gwnxsv8sjqy1x1lrazxswyj49xc06i4"; depends=[cowplot directlabels doParallel GA ggplot2 moments zoo]; }; foreach = derive2 { name="foreach"; version="1.4.4"; sha256="0j2yj0rn0d5nbzz9nq5rqqgnxhp9pbd92q4klsarl2xpsn8119y0"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; - forecast = derive2 { name="forecast"; version="8.3"; sha256="0k5b9skjpyzx7gbd8z6f3d92wl2f8zgli781m4jg903ra0hsyncj"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca uroot zoo]; }; - forecastHybrid = derive2 { name="forecastHybrid"; version="2.1.11"; sha256="01jmq6mw3idvascgrmr7i69pllqzdwbks42748pq18znw3f2yvjl"; depends=[doParallel foreach forecast ggplot2 reshape2 zoo]; }; + forecast = derive2 { name="forecast"; version="8.4"; sha256="13qq25b4r4fl18yl1wb441pqk98yqhi2gidy6si1kxgifq1xyp39"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca uroot zoo]; }; + forecastHybrid = derive2 { name="forecastHybrid"; version="2.2.12"; sha256="0qvn7qn5ddpiql1464rnhn7dlp015szj0v2bbs4i5v88flp831wv"; depends=[doParallel foreach forecast ggplot2 zoo]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.2-0"; sha256="1rnf2a7sri52sm976iicab660qk07pmz8jmd3q71dg4hmc30yf9j"; depends=[Rcpp]; }; - foreign = derive2 { name="foreign"; version="0.8-69"; sha256="0s1lxmd85dd0kxx8hwk02w9l7pmpk4bpy7787fbyh2dbq5g9ys0k"; depends=[]; }; + foreign = derive2 { name="foreign"; version="0.8-70"; sha256="11mql8q3i1q593dvd351fhvkvfab25li80d1ahl4xjjzy52qdkc6"; depends=[]; }; forensic = derive2 { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; forestControl = derive2 { name="forestControl"; version="0.1.1"; sha256="0qfj4qf0d1bb1wllhpg9r8gvg353zdqv7py9a3hm33yhs3l5x0g5"; depends=[Rcpp]; }; forestFloor = derive2 { name="forestFloor"; version="1.11.1"; sha256="1sslxq44qmmmdhr7800bz8lj9w2l7f7x1vly3w2z7j1qdijc7nw7"; depends=[kknn randomForest Rcpp rgl]; }; forestinventory = derive2 { name="forestinventory"; version="0.3.1"; sha256="0brbg0q8j9ymvm527db7063kgs6i6flja7mxqk7yvaf3dh8wsi46"; depends=[ggplot2 plyr tidyr]; }; - forestmodel = derive2 { name="forestmodel"; version="0.4.3"; sha256="1v1m8dvird2r1jqig492msqpp9sb4s79bhgnrs9y2c0ba46jzykh"; depends=[broom dplyr ggplot2 lazyeval]; }; + forestmodel = derive2 { name="forestmodel"; version="0.5.0"; sha256="09gwgsh42gkmhs8ijq5xfbbkb1hk6sjb0q32mw2ymc6x9ycr1a9j"; depends=[broom dplyr ggplot2 lazyeval tibble]; }; forestplot = derive2 { name="forestplot"; version="1.7.2"; sha256="1cqk0fwpbn4an6xn28kpvqmcp3mgv8isg8dy755sv5fkqzzjz1dg"; depends=[checkmate magrittr]; }; forestr = derive2 { name="forestr"; version="1.0.1"; sha256="0m26x7ngl89ngk1qhg50npmwli2npmjs9pfb9rg5hmx4fzr8k63i"; depends=[dplyr ggplot2 plyr]; }; formatR = derive2 { name="formatR"; version="1.5"; sha256="19sd23vgs4ac0fwlw40j3676k6mramb0ajlq8hdw23kjwdx1jk47"; depends=[]; }; @@ -6501,12 +6569,11 @@ in with self; { formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; formulize = derive2 { name="formulize"; version="0.1.0"; sha256="1fz8q48z4zvfglxzmmjznb7lcfrrfqmnws85jfkihs3ff43h7ccc"; depends=[recipes rlang]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; - forward = derive2 { name="forward"; version="1.0.3"; sha256="0swn5ysp3f660kl9jpmkck9324j1g3yhj2hl238rfrcr5wihxifc"; depends=[MASS]; }; forwards = derive2 { name="forwards"; version="0.1.0"; sha256="0pb101gdf2a4plalhhm34aixkss3lzfg8yj6yfi0d6khjmaza33i"; depends=[]; }; fossil = derive2 { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; }; fourPNO = derive2 { name="fourPNO"; version="1.0.4"; sha256="08l359fj39sdbq48qk05805kv25rw1wq93db0b7rvsi3iyi2lngk"; depends=[Rcpp RcppArmadillo]; }; fourierin = derive2 { name="fourierin"; version="0.2.2"; sha256="0hy033bzybdc214z10wnbqph5f83fsr13admnzwb1d2drpbljnc8"; depends=[Rcpp RcppArmadillo]; }; - fpCompare = derive2 { name="fpCompare"; version="0.2.1"; sha256="0vva60xixlx6l8623qvj2sdn5w3gjscrv5g8hqmgir4f211lzg38"; depends=[]; }; + fpCompare = derive2 { name="fpCompare"; version="0.2.2"; sha256="10a87bpbpvrbrpyfx7ygyr9b7wd3fp79nd4g2ggl1gz3b1daqgxq"; depends=[]; }; fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; fpc = derive2 { name="fpc"; version="2.1-11"; sha256="04alsqb5gbhsjg1000d8w52pmpnlwca29r0s12f7n7mdccdv6xar"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; @@ -6517,23 +6584,24 @@ in with self; { fpp2 = derive2 { name="fpp2"; version="2.3"; sha256="1krrvwg25qjfpfjdwd3n0d87ihl4zf7y1bnh6gbi92sdja3ljq48"; depends=[expsmooth fma forecast ggplot2]; }; fptdApprox = derive2 { name="fptdApprox"; version="2.1"; sha256="00vxwcwca7zfm4fr0x9898snr6j0474ci1bahjmpj2jxiclwnhzs"; depends=[]; }; fracdiff = derive2 { name="fracdiff"; version="1.4-2"; sha256="03l5dqpqwwi5c8fwc2vissfawcsignai60h2zalknkibvk782dwq"; depends=[]; }; - fracprolif = derive2 { name="fracprolif"; version="1.0.6"; sha256="1cpb71yk1245j6qz4mqvpqc3s3lrmav4blp5wlxasjizn3ilwh66"; depends=[emg numDeriv]; }; + fracprolif = derive2 { name="fracprolif"; version="1.0.7"; sha256="124p5x59smqf8ba0xwhlq69w77zga2bv9plzwkadf700lzvaj2wx"; depends=[emg numDeriv]; }; fractal = derive2 { name="fractal"; version="2.0-4"; sha256="18lr9z0gslvfc3z8vyj3krqj3bfhg60zv1fzinrwwkc4cpk1w7mp"; depends=[ifultools MASS sapa scatterplot3d splus2R wmtsa]; }; fractaldim = derive2 { name="fractaldim"; version="0.8-4"; sha256="0fln4qn0d79agnnlzi8b9g9qn90zynq1cg9v5isiyi71345v45nr"; depends=[abind]; }; fractalrock = derive2 { name="fractalrock"; version="1.1.0"; sha256="15f4w8hq3d8khgq269669ri16qxhar9646w40cw7wzh79r9gpf00"; depends=[futile_any futile_logger quantmod timeDate]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fragilityindex = derive2 { name="fragilityindex"; version="0.1.0"; sha256="06f7w0ff8mmydgylz5a0z29fc78spvmay3sjq0rz9k44w4bb9z3q"; depends=[pbapply stringr survival]; }; - frailtyEM = derive2 { name="frailtyEM"; version="0.8.3"; sha256="02nsq5zjxg1hg578jn6ihygvyzscisx8r0s14a51dq1v6cjrz402"; depends=[expint ggplot2 magrittr Matrix msm Rcpp survival tibble]; }; - frailtyHL = derive2 { name="frailtyHL"; version="2.1"; sha256="02vk1hwjpdwdajy527q034dpvnchsnwhqqlf6nq19wqhxq7355qj"; depends=[cmprsk Matrix numDeriv survival]; }; - frailtySurv = derive2 { name="frailtySurv"; version="1.3.2"; sha256="0qsq96p29rxlfkhbmg8cfqdnpzh8wq2nadpiim9d6l0bs20r51gl"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; + frailtyEM = derive2 { name="frailtyEM"; version="0.8.8"; sha256="0mfhhb025wzwvch5bcvvfsljki34xahdkqli7lvqbhhihba00r1p"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; }; + frailtySurv = derive2 { name="frailtySurv"; version="1.3.4"; sha256="0nsrgkfr726hkf2x3df0jgb35b6siaq7jhydzddjf4az8d08akvw"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; frailtypack = derive2 { name="frailtypack"; version="2.12.6"; sha256="0w2v5ik4ryvl5hph9cwxcrrglwpqbyirfrayyw9g0l1wdc1mfvi4"; depends=[boot MASS nlme statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; + frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; }; franc = derive2 { name="franc"; version="1.1.1"; sha256="0agrzdrgfw4a3jn6a2867rf99a87ngv6wi73ys2l7gr7mkpq54v5"; depends=[jsonlite]; }; frbs = derive2 { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; - freeknotsplines = derive2 { name="freeknotsplines"; version="1.0"; sha256="19zs42q9njknirdbrbnp8bv4vr32kd8wxmkqj0a0nh06i5fcx67r"; depends=[]; }; + freegroup = derive2 { name="freegroup"; version="1.0"; sha256="1x0n3mjm37b83lxa0bcylbrn1c0sdvl54mz317a8g2y2ydk7h3zi"; depends=[magrittr]; }; + freeknotsplines = derive2 { name="freeknotsplines"; version="1.0.1"; sha256="1yl53rnngrpj5mv1fgd0rgiqaw431g4ckxl1bq0l712647njx02a"; depends=[]; }; freestats = derive2 { name="freestats"; version="0.0.3"; sha256="0b18n8idap089gkmjknzzb94dvs2drpdqs0mrw7dqnacxgbbqwfj"; depends=[MASS mvtnorm]; }; freesurfer = derive2 { name="freesurfer"; version="1.6.1"; sha256="1ibhl5sbz85skkawmfdr9df6wdq6b3bl6cdvykx0gcszmd3fiabh"; depends=[neurobase R_utils reshape2]; }; - freqMAP = derive2 { name="freqMAP"; version="0.2"; sha256="02hpkqqrxifrr1cxn5brp166jwa8lgl1mcgmq7s8csrbbd900ziv"; depends=[]; }; + freetypeharfbuzz = derive2 { name="freetypeharfbuzz"; version="0.1.0"; sha256="0hz9wnn1pi09v4azi02ai7hh4iwml90pdrs329y3p8qzxmvry56b"; depends=[fontquiver]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; freqdom = derive2 { name="freqdom"; version="2.0.1"; sha256="0ig0ygnlcb5ndjjm5x8jpp37gvgwli9xv6zsvbbgfh72q418qswp"; depends=[matrixcalc mvtnorm]; }; freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; }; @@ -6541,6 +6609,7 @@ in with self; { frequencies = derive2 { name="frequencies"; version="0.1.1"; sha256="0d52kf4r13n59990xhra9i6gfvs4sn7ix54d0c0g56p1rj7hnh79"; depends=[dplyr]; }; frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.0"; sha256="02ha5jfkjaxyfp7x1h0xx32ijha2dh7h52z687a9y9azrqvjv0jp"; depends=[knitr pbapply urca vars]; }; freqweights = derive2 { name="freqweights"; version="1.0.4"; sha256="1iy2vzv4wc2883yq8r31wpspa7gm7cd4wkgvbh7mwafll463zni2"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; }; + frite = derive2 { name="frite"; version="0.1.0"; sha256="0qi03m8n05hx0ghh12zqrjvsqhyir4q9qmxb657d4vzajmih0bhn"; depends=[assertthat magrittr purrr stringr tictoc]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -6549,13 +6618,13 @@ in with self; { frontier = derive2 { name="frontier"; version="1.1-2"; sha256="1vpjd57cc6niwqibhz1ib46zj57d5a9m40yaq7kr9awk9di65ryz"; depends=[Formula lmtest micEcon miscTools moments plm]; }; frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; frt = derive2 { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; - fs = derive2 { name="fs"; version="1.2.2"; sha256="194sl0vv0p2h1z474yzh9agqj1w02ppvkpz5p1b8ljn794h4ar7a"; depends=[Rcpp]; }; - fscaret = derive2 { name="fscaret"; version="0.9.4.3"; sha256="1miqg7rd3q11aksbjf0nswwnxb7c2p2f0b85nmnwm11snbf1gg8s"; depends=[caret gsubfn hmeasure]; }; + fs = derive2 { name="fs"; version="1.2.3"; sha256="1kbdz8hl96b2gs5vrfnwzgimn8qf8gk6ggicr7jylxzp21zzsry5"; depends=[Rcpp]; }; + fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; fsdaR = derive2 { name="fsdaR"; version="0.2-21"; sha256="121khfqy1ixqp86cl3cngc40zxjpd4nm5k0lk558nxcfgyyzvx8y"; depends=[rJava robustbase]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; fslr = derive2 { name="fslr"; version="2.17.3"; sha256="1g7z1jsj89kqyclb3qdc7c6dgn18jqjmrxpxi62llkixhqg21yha"; depends=[matrixStats neurobase oro_nifti R_utils]; }; - fso = derive2 { name="fso"; version="2.0-1"; sha256="02dr12bssiwn8s1aa1941hfpa4007gd65f3l4s74gs2vgjzdxf8s"; depends=[labdsv rgl]; }; - fst = derive2 { name="fst"; version="0.8.4"; sha256="1jarhz5c6bib4n3xms1xhgybzaqdf4llfbgmnqndz2gwxjx1igia"; depends=[Rcpp]; }; + fso = derive2 { name="fso"; version="2.1-1"; sha256="0hn2ypm0nwfbmnh9il78pi30x7gfmayfangqyh0d63ngyz40bvma"; depends=[labdsv]; }; + fst = derive2 { name="fst"; version="0.8.8"; sha256="0yhkpq54msr0620456gzyg5c47n8cjvnpc3iyvj24cvyar2l9vwp"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; @@ -6575,33 +6644,35 @@ in with self; { funchir = derive2 { name="funchir"; version="0.1.4"; sha256="1mbsy65628q117c2k01wvibpjd3ibigy4yc1c8m0rf9jwsc67qjb"; depends=[data_table]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; }; - funcy = derive2 { name="funcy"; version="0.8.6"; sha256="0wlcwwmv92djj35i7nnfns5l79fca6hsfrjxgsqmwgjb28gy19bs"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; + funcy = derive2 { name="funcy"; version="0.9.0"; sha256="1b6ckqi2sqg324309l0mqcjpqy5idmm71s30axflr5bcrhxkkiz3"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; fungible = derive2 { name="fungible"; version="1.5"; sha256="1f4q26rfl7d35ng5nx11mzzv9fhk4zg62j63c59i649wcx1xsan9"; depends=[e1071 lattice MASS mvtnorm nleqslv R2Cuba stringr]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; }; funrar = derive2 { name="funrar"; version="1.2.2"; sha256="179kxhwkd431d2n917mzjnr5qvh09f0hdm2c78lww4ijb54dhn0l"; depends=[cluster dplyr]; }; funreg = derive2 { name="funreg"; version="1.2"; sha256="199zvqali0sb0z4yp20rm5da0kd7z3rgv47g1cb1apsbcw0cq51n"; depends=[MASS mgcv mvtnorm]; }; funtimes = derive2 { name="funtimes"; version="5.0"; sha256="0xq0n3939rsrz7dna4d3d7mrpxad2xswnblsc4a88nbq6cmx5c70"; depends=[dbscan Jmisc Kendall]; }; - furniture = derive2 { name="furniture"; version="1.7.6"; sha256="0yz3l6lrfq5mbh4d7z6ny2gg3qixglcl9lvvs97a3l7mqwi5x4h9"; depends=[knitr]; }; - fuser = derive2 { name="fuser"; version="1.0.0"; sha256="0l2ddc3lal3gvzkn8b09i7pzd9nvqnr45naz3ni52nmgygwdk5ma"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; }; + furniture = derive2 { name="furniture"; version="1.7.9"; sha256="16nz028cgfhhn4xvhkzy6y1a1p6x4xfzna50q4jaih0pd980i07a"; depends=[knitr magrittr]; }; + furrr = derive2 { name="furrr"; version="0.1.0"; sha256="1ld9aa9hydna94hgm6p91zjbfv1dz1vsgchjlpknkg6irbvkfafx"; depends=[future globals purrr rlang]; }; + fuser = derive2 { name="fuser"; version="1.0.1"; sha256="17lsfpd9hdichj3wflac896zyjbq7a8w2gmlgj8nbgg80f646fgr"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; }; fusionclust = derive2 { name="fusionclust"; version="1.0.0"; sha256="1h03nlk4gnz4j5h2h5bxazkka2qq983h7nglm1ghzqvbqjk6sv37"; depends=[bbmle]; }; futile_any = derive2 { name="futile.any"; version="1.3.2"; sha256="09z12dlj7cnkfwnmgsjknsghirv1cry83w4a9k4d0w5a1jnlr5jg"; depends=[lambda_r]; }; futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; - futile_matrix = derive2 { name="futile.matrix"; version="1.2.6"; sha256="10v7ffjm8az75lb39526p3y8b1zhmmzx07pybiy20zydznhyvv2p"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; - futile_options = derive2 { name="futile.options"; version="1.0.0"; sha256="1hp82h6xqq5cck67h7lpf22n3j7mg3v1mla5y5ivnzrrb7iyr17f"; depends=[]; }; + futile_matrix = derive2 { name="futile.matrix"; version="1.2.7"; sha256="0nbzcy5l3nllppwmdib1s11s7b4m7mfvqb90n6b2hgmd48jsw8wg"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; + futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; futility = derive2 { name="futility"; version="0.2"; sha256="0njckhwmawqhiznv241yjghh99wl72c4xknp9nzbmvi5j575rnlh"; depends=[]; }; - future = derive2 { name="future"; version="1.8.0"; sha256="096pfwafiwr16m13qda824ba3mzqabz4cdbg08sz1vh5s2k2hp4c"; depends=[digest globals listenv]; }; + future = derive2 { name="future"; version="1.8.1"; sha256="1bpx6b85dd8xq37527h72qszz2dg810xcp975z93hymk1d8hf41a"; depends=[digest globals listenv]; }; future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.15.0"; sha256="0r1bnp9mnv8jk9d6dpr94cqn4zihpm7cgxqj0c3l0x9b6i0ny3z2"; depends=[BatchJobs future R_utils]; }; - future_apply = derive2 { name="future.apply"; version="0.1.0"; sha256="1c5jyklam5j9lmr5jmn6972wwlbyaaihy4kczxib87glmc4g0a4k"; depends=[future globals]; }; - future_batchtools = derive2 { name="future.batchtools"; version="0.6.0"; sha256="0npvy8d927k3ilmnwcq1fh5lvpdr009pyc93ils5qhwhfma3wfh0"; depends=[batchtools future]; }; - future_callr = derive2 { name="future.callr"; version="0.2.0"; sha256="0b6f7iwx3pa6fdvb9zrzmx7ak94bgmscswyvinaysjxxcyfkmym2"; depends=[callr future]; }; + future_apply = derive2 { name="future.apply"; version="1.0.0"; sha256="1jippm805hda75h24grp9pwypf10cp4m4hq55vni7qa9qhyi7r2x"; depends=[future globals]; }; + future_batchtools = derive2 { name="future.batchtools"; version="0.7.0"; sha256="0sk2qs6fgq241zibjxkmvdgv7xq0lablwwd6px6rxi7asxjv7zbh"; depends=[batchtools future]; }; + future_callr = derive2 { name="future.callr"; version="0.3.0"; sha256="0z9gmy46n823y38hq4xgc1x3v88hmz5sdfa6xsp0mk1bwlc94q8f"; depends=[callr future]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; - fuzzr = derive2 { name="fuzzr"; version="0.2.1"; sha256="10f9qd7cn0sqk02b5p1iq9prf5kjdivn0fkky4lb7chqvk2cwbv5"; depends=[assertthat progress purrr]; }; + fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.3-10"; sha256="1xj5xsm2s4ylv3b8v80qny201iddjym07h8d50asas7xy1k7945z"; depends=[]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.5"; sha256="1ifhvdzn0rs8gxqmpz8w1prxg3pxs5jqx5lh0r4i5rai49qjy3sb"; depends=[doParallel doRNG foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.4"; sha256="06r103hshc6xcjllv5qfiw3i1ddz4c8svy0i4j0avnffaarlc2wa"; depends=[dplyr geosphere purrr stringdist stringr tidyr]; }; + fuzzyreg = derive2 { name="fuzzyreg"; version="0.3"; sha256="1mg4c71d0yc42y4iqdwkw13nlkq09parp2xwi1fv700vmnn4gk5w"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.3"; sha256="1kbli1m44317m95a0r34vza9p27vd9ala05jrbrdkadninwdynal"; depends=[R6 reticulate]; }; fwdmsa = derive2 { name="fwdmsa"; version="0.2"; sha256="0p0kh8am6gajfaixkvq61f12hfbm6chl9372yzn1yilhiyvqdxgp"; depends=[]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; @@ -6617,16 +6688,15 @@ in with self; { gMWT = derive2 { name="gMWT"; version="1.1"; sha256="1ws96x3vjswh6m6s9zn3r9gp7xp6ybdkkxsq9a73ng2zqz2qjdl0"; depends=[clinfun Rcpp RcppArmadillo]; }; gPCA = derive2 { name="gPCA"; version="1.0"; sha256="1ylb1d24dxnzpws9bbanwhyizjr3ljky2bhrph4c5yaq0zwwbrkw"; depends=[]; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; - gProfileR = derive2 { name="gProfileR"; version="0.6.5"; sha256="1x6ym5bdlpc5z3h3wpyryym2g6qvm45blydw7s44bi165r30vrim"; depends=[plyr RCurl]; }; + gProfileR = derive2 { name="gProfileR"; version="0.6.6"; sha256="1n6cj12j102b4x9vhyl4dljp1i0r43p23cnhqbx4als2xfxdlqgi"; depends=[plyr RCurl]; }; gRain = derive2 { name="gRain"; version="1.3-0"; sha256="0xb746pyh8k8w1a8nz7z41bflx5xr0cqdq5l5wj7j464zv2cw6jy"; depends=[functional graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; gRbase = derive2 { name="gRbase"; version="1.8-3"; sha256="143qvs5mwypswdq344a48kzn83sx9jskdr9w6kxa3fzhdcqlhi7d"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; - gRc = derive2 { name="gRc"; version="0.4-2"; sha256="0cqc3s7a1njxzmnx7yx1yjkrazbai3gpw2kc4l7g49ld4j40bsln"; depends=[gRbase MASS]; }; gRim = derive2 { name="gRim"; version="0.2-0"; sha256="0ihl4vsnp6xkcpcf37p2xcqnbvyvjamcz5060f1kirn8xzwzq29y"; depends=[gRain graph gRbase igraph Rcpp RcppArmadillo]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="0.5"; sha256="1f3appvy78adv9jll47smgw2apm3dkm9zrm17hhdxmcnqypd7ias"; depends=[]; }; gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; - gWQS = derive2 { name="gWQS"; version="1.0.0"; sha256="0n0zwfqz5g4js5y3ss64dv5842jypr6sqacs32ax37immd34slhq"; depends=[ggplot2 Rsolnp tableHTML ztable]; }; + gWQS = derive2 { name="gWQS"; version="1.1.0"; sha256="03v6b90745nd0jxil39rgay1yh1lrg9p1wbi22yffd29a2arsf22"; depends=[ggplot2 Rsolnp tableHTML ztable]; }; gWidgets = derive2 { name="gWidgets"; version="0.0-54"; sha256="13lbbbnmkvb559klgsnz0q27qlyv102xakb6yccxsxjw249hm8c2"; depends=[]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-7"; sha256="02jrv5x7s3jm2ajpdvgsp4zkn65gjy96rvgdxhf9smp1kb6llzg0"; depends=[digest]; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; }; @@ -6642,30 +6712,31 @@ in with self; { gamRR = derive2 { name="gamRR"; version="0.4.0"; sha256="0grd9d7rar4lq82v55k7c2d3h0g2lh7ny4bpxanqgrq02jkpnz1p"; depends=[boot mgcv]; }; gamair = derive2 { name="gamair"; version="1.0-0"; sha256="13n2n4b7givzvia93awy7ym0gihl4lr08w3a6ny2pq0f3zbhzw97"; depends=[]; }; gambin = derive2 { name="gambin"; version="2.3.0"; sha256="1kwh8s191m6gsjczqc3svf6zp1k4zi86rqz7s94rahg84vwh6a9b"; depends=[doParallel foreach gtools]; }; - gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-0"; sha256="0z9wzvxjhnjl2bjnd5pxqzvv43hak7x5m23j76qnm05j12vw4bz1"; depends=[mboost stabs]; }; + gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-1"; sha256="06n2xk7k24gz95jy1cr6shpfd89ylispq6mn3fvxblqdf8vhdixj"; depends=[mboost stabs]; }; gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; }; - gamclass = derive2 { name="gamclass"; version="0.57"; sha256="08s44n6x7m01gw02q4zgpa5vxbcgx6mnqgmdn6760ff66wy4zrgc"; depends=[ape car DAAG KernSmooth lattice latticeExtra MASS mgcv randomForest rpart]; }; + gamclass = derive2 { name="gamclass"; version="0.58"; sha256="0dldqnbdgrafkm1a9kb0gyyfs0s2g31iv4ndlnnm2rd63ga4xxsn"; depends=[ape car DAAG KernSmooth lattice latticeExtra MASS mgcv randomForest rpart]; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.2"; sha256="0srxsm1zhrx1dpm94mkcsds6rwkx9gi9yfbrkzylhrxgi4g8pvwp"; depends=[shiny]; }; - gamlr = derive2 { name="gamlr"; version="1.13-4"; sha256="08igzs2raz6nnkz2aisxaq9jy2mlb49cqlm6gwxp0mrag4q6xxrz"; depends=[Matrix]; }; - gamlss = derive2 { name="gamlss"; version="5.0-6"; sha256="1gwnp3i7458ms79fqi7pyna6adh0hz2jjigyxgdz98vxh39ix5ps"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; + gamlr = derive2 { name="gamlr"; version="1.13-5"; sha256="0fc27b6qcm01drb7pb14wri2hlb464jig3x7sb8njwrxcqqia14n"; depends=[Matrix]; }; + gamlss = derive2 { name="gamlss"; version="5.1-0"; sha256="00hiy8k3hls8igkcl2yzgx15mmj4f305zssav5bwsxwijj4m4pv6"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; gamlss_add = derive2 { name="gamlss.add"; version="5.0-1"; sha256="1agk6pfm04hf9dp5r6dvxqkj1hykx23a16q7vch2sg752z0dadgk"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; - gamlss_cens = derive2 { name="gamlss.cens"; version="4.3-5"; sha256="06baf94kpprj03dggnyvvmi4nw3qa23cyy1crsa0zfnaqj915ypv"; depends=[gamlss gamlss_dist survival]; }; - gamlss_data = derive2 { name="gamlss.data"; version="5.0-0"; sha256="1mqz7m4iksmx939bz1lq05cxz3bfcksn2ggw3cv7b0k98cykgg1s"; depends=[]; }; + gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; + gamlss_data = derive2 { name="gamlss.data"; version="5.0-1"; sha256="0q0ah8x141172fxh25bk913zzs5njyn24xkah23px1zsh4684gsy"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; - gamlss_dist = derive2 { name="gamlss.dist"; version="5.0-4"; sha256="165ll56frlxka7iqix1anxdx6612gr62h7p0a27vi45yjbdj24id"; depends=[MASS]; }; + gamlss_dist = derive2 { name="gamlss.dist"; version="5.0-6"; sha256="0xz0968diww9h2z2wgq2h5bgxx3h8nsv0yy4kapcay4ds1nkfyzx"; depends=[MASS]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="4.3-5"; sha256="1jfs3ib2imwgazf8v23fa12iaflv0pm944bkqklx8qcljxp1lcs7"; depends=[gamlss gamlss_dist nnet]; }; gamlss_nl = derive2 { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; }; - gamlss_spatial = derive2 { name="gamlss.spatial"; version="1.3.5"; sha256="192syg12qwhv9782spdg3sbpm2mfaj20bkr78h1ww64755srfc5k"; depends=[gamlss gamlss_add gamlss_dist mgcv spam]; }; + gamlss_spatial = derive2 { name="gamlss.spatial"; version="2.0.0"; sha256="1pgmlc6i7p5mjb1pc7b861yjl2gwr37bbzj3j2dl0qzybrs742mx"; depends=[gamlss gamlss_add gamlss_dist mgcv spam]; }; gamlss_tr = derive2 { name="gamlss.tr"; version="5.0-0"; sha256="02akydpvwl1qkhxpr72lv9qp4z2ra69abyq51b57rh4p60g78vhm"; depends=[gamlss gamlss_dist]; }; gamlss_util = derive2 { name="gamlss.util"; version="4.3-4"; sha256="0p8lnwrn7cx97qnxls1x532f3ywszdyib2qiwx5qc7sam59h9c8j"; depends=[gamlss gamlss_dist zoo]; }; gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; }; gamm4 = derive2 { name="gamm4"; version="0.2-5"; sha256="11wblnh22xq3m3z25i30v2kd0zlf8wa3cm5z38z56rhk3l2wf5bc"; depends=[lme4 Matrix mgcv]; }; gamm4_test = derive2 { name="gamm4.test"; version="0.1.0"; sha256="0ab6rksr88fsv6whp6cxyshpv5ixmf9lw51cl3rzk870r8q326wg"; depends=[doParallel foreach gamm4 Matrix mgcv plotly RColorBrewer]; }; + gammSlice = derive2 { name="gammSlice"; version="2.0-1"; sha256="0286gffy7hym3fwy26k8sfl7nj945lavpjvn435khp2rsmc1km2i"; depends=[KernSmooth lattice mgcv]; }; gamreg = derive2 { name="gamreg"; version="0.3"; sha256="1svrgbb8qdy2hzpq1g38v2lzmlbrn7qljix827biqzwgiajy69gg"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.8-1"; sha256="107hbshi36dcyykhy6w1i1ih84xwdqv1q3nad73d3krf7bhvhg5f"; depends=[foreach mda]; }; - gaoptim = derive2 { name="gaoptim"; version="1.1"; sha256="04igpn73k6f6652y496igwypfxmz4igg4jgxx6swqyi37182rqhm"; depends=[]; }; - gap = derive2 { name="gap"; version="1.1-21"; sha256="0vslbk66h1gkpqrpj4pkxnx7nr1fnjp0zvym9cxzyxww797bd57s"; depends=[]; }; + ganalytics = derive2 { name="ganalytics"; version="0.10.4"; sha256="0l2l67135bvbivy1hzlrzx98kn4w6bz2mhdnfkilrs2mwlksyhvv"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr XML xml2]; }; + gap = derive2 { name="gap"; version="1.1-22"; sha256="1xryy228bysj7qmb73znh6vp31bchshwpsjr277vyaffr6m939ki"; depends=[]; }; gap_datasets = derive2 { name="gap.datasets"; version="0.0.2"; sha256="0skxgiwymd8c4vsy2dbddifjj9a0bq52gdd2r62slsv0q9haw96y"; depends=[]; }; gapfill = derive2 { name="gapfill"; version="0.9.6"; sha256="0384v7capab7dbyvz6b2jvnh840z6ab3857my0h3cgsys3lhn3c5"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; gapmap = derive2 { name="gapmap"; version="0.0.4"; sha256="0xz19n0vvdzbfg6afp3y0qfbs3f2nfxib1cyya3cax5wqqfbzw3i"; depends=[ggplot2 reshape2]; }; @@ -6681,6 +6752,7 @@ in with self; { gazepath = derive2 { name="gazepath"; version="1.2"; sha256="0h5a9bpgx268yh0zy3y4xfvij1ncx92x5qphjc94xmzbrl0br1mf"; depends=[jpeg scales SDMTools shiny zoo]; }; gb = derive2 { name="gb"; version="2.3.3"; sha256="0gkdkbwr168vi7lgccla49l43rkmjcfrwlqdr65mg5syzcxrh7nh"; depends=[boot KernSmooth]; }; gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; + gbfs = derive2 { name="gbfs"; version="1.0.0"; sha256="1kikbsdmh8v2s3kabmfpbwzzwxkzadqz7xpn5ng90npl3j8zaps6"; depends=[devtools dplyr jsonlite lubridate readr roxygen2 stringr testthat withr]; }; gbm = derive2 { name="gbm"; version="2.1.3"; sha256="0ayrpq5qm18dsain088mbw0037bijxcy342grb6g2qnp67llpwpa"; depends=[lattice survival]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; @@ -6693,27 +6765,28 @@ in with self; { gcerisk = derive2 { name="gcerisk"; version="18.02.22"; sha256="1wy9l4s17ji5xj1cxjnb59qz3242yjs4zp76fy3rg1m0k7ib52vg"; depends=[cmprsk ggplot2 survival]; }; gcite = derive2 { name="gcite"; version="0.9.2"; sha256="1xwnf8hsakzqg5nm5c14zw239scd2dl9rfd02mj5xp6548qwxrz9"; depends=[data_table httr pbapply rvest tm wordcloud xml2]; }; gclus = derive2 { name="gclus"; version="1.3.1"; sha256="02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"; depends=[cluster]; }; - gcmr = derive2 { name="gcmr"; version="1.0.0"; sha256="13xja7rh2wkmi2j7yxrkj99sl96mlcgkp3v5aagnz140jx3jibsx"; depends=[betareg car Formula geoR lmtest nlme sandwich sp]; }; + gcmr = derive2 { name="gcmr"; version="1.0.1"; sha256="093j1cmfw83rck00lx2ns7sfaya7kfc8k7af0q80az7w2g9hmmpv"; depends=[betareg car Formula geoR lmtest nlme sandwich sp]; }; gconcord = derive2 { name="gconcord"; version="0.41"; sha256="1n3pfwk6vip19q1zhbz1n164f9vi7mig8pcd07c4wxnm5ir9dagy"; depends=[]; }; gcookbook = derive2 { name="gcookbook"; version="1.0"; sha256="0hb52zfi5bl2j0h8lazz4gzhhcvpicb4ld6xm2vkvi4cj47piyy8"; depends=[]; }; - gdalUtils = derive2 { name="gdalUtils"; version="2.0.1.7"; sha256="0n8c72m7dapy8agqcglagb8bwf0rpajdq9qsli3qyrrp7fh3h4ck"; depends=[foreach R_utils raster rgdal sp]; }; + gdalUtils = derive2 { name="gdalUtils"; version="2.0.1.14"; sha256="0dvp1qzxxp6rjqfxpxckbfhdqanksnm4rfgsalvb5wdm5qmm02l9"; depends=[foreach R_utils raster rgdal sp]; }; gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; gdimap = derive2 { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; }; - gdistance = derive2 { name="gdistance"; version="1.2-1"; sha256="1wygcx0iki7g10f9gjbycrjjadmsw3153ha9rnqvc9hwwf34m9y1"; depends=[igraph Matrix raster sp]; }; + gdistance = derive2 { name="gdistance"; version="1.2-2"; sha256="0lqpxsg01ibkaq50qyccdhsl2sbb4kh9bcfifs1yzsg45bq27jf8"; depends=[igraph Matrix raster sp]; }; + gdm = derive2 { name="gdm"; version="1.3.11"; sha256="1bsy8fjzc0034hxw5n4ip4lkwr38fiyvw9q21bk17sxn44cnnxz4"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; gdmp = derive2 { name="gdmp"; version="0.1.0"; sha256="1dlzxf17ssm10pw14mk5lk0plgav2mj8xf39dacyg9hlrz9pjwki"; depends=[]; }; gdns = derive2 { name="gdns"; version="0.2.1"; sha256="0dvrknhx0d00yi429zjdcs3ghgbpfjhrclkn6cicd049qdp4q396"; depends=[dplyr httr jsonlite purrr stringi tibble]; }; - gdpc = derive2 { name="gdpc"; version="1.0.3"; sha256="0qc9wl7zxqwzigvzpm0nyx735ah8ascmcwd0yays5mqc74iqqx3b"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; + gdpc = derive2 { name="gdpc"; version="1.1.0"; sha256="1q1c9pypkb8dv6bvgizaca4p43krc52fvlvjz9l6nkpazr1qx33d"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.0"; sha256="0kc3l93640x8d6g3pa9gbr7ci5hmryg9i1nqpasgnvb6ixv6azbm"; depends=[]; }; gdtools = derive2 { name="gdtools"; version="0.1.7"; sha256="122k9spymawfnfyksxyapwq9cigydy5nrjwhrwrhy3qkax3aycf6"; depends=[Rcpp withr]; }; gear = derive2 { name="gear"; version="0.1.1"; sha256="1sqj9pz15j1v6fm4q2dp0zhdmy9zmmhmgxjwria5ihrp3b5hvwry"; depends=[lattice optimx sp]; }; gee = derive2 { name="gee"; version="4.13-19"; sha256="14n2fa2jmibw5j8n4qgbl8xbxhapmx4z3zrmkbcci39k9dsyplzb"; depends=[]; }; gee4 = derive2 { name="gee4"; version="0.1.0.0"; sha256="1vvzb9sc69g292zmh9djd15jgc7falypd5p7mzw6ps7mirpbnicf"; depends=[Formula Rcpp RcppArmadillo]; }; - geeM = derive2 { name="geeM"; version="0.10.0"; sha256="0bk99kwh6xapkaxc3yis5x3d49j7pb45hq4ksbmkhz6ba21c4sn5"; depends=[Matrix]; }; + geeM = derive2 { name="geeM"; version="0.10.1"; sha256="1r9zyjv7r7r7avdqi54dvczf971frz8pgrs1a04kan5mh4ls6xpy"; depends=[Matrix]; }; geecure = derive2 { name="geecure"; version="1.0-6"; sha256="0nmnrkfgblv38qvk66bdk8933icr59mayqwljkvmpy59sm6br2k5"; depends=[geepack MASS Matrix survival]; }; geepack = derive2 { name="geepack"; version="1.2-1"; sha256="13fkz38rsdk1byv6rdpdmphz5dd31r4h8ms49hali6hjh5rydzvy"; depends=[]; }; geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; geex = derive2 { name="geex"; version="1.0.3"; sha256="0px197mz3qfx7s4wfdjlgjpss03y7wid1qa34xf4xan05dnrrnzc"; depends=[lme4 Matrix numDeriv rootSolve]; }; - geigen = derive2 { name="geigen"; version="2.1"; sha256="1alssnwypnf20bc26q50baja6g0drwclajlsqamamss0mfc8hsnh"; depends=[]; }; + geigen = derive2 { name="geigen"; version="2.2"; sha256="0wfd87xd438ri0a9m9dz46jfy4wpm75skc3iyppx80d03kijvcig"; depends=[]; }; geiger = derive2 { name="geiger"; version="2.0.6"; sha256="1zry3iclj7yciiiysbq6z0kn759c7hdy5fq0dcszkskqcd92qfz1"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; }; gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; gem = derive2 { name="gem"; version="0.19"; sha256="11gzqpc9s1bkx1w6ncjylmfqqf3wj5hgca4lzygvlni9xz7pk517"; depends=[signal]; }; @@ -6735,7 +6808,6 @@ in with self; { gendist = derive2 { name="gendist"; version="1.0"; sha256="0n3ax7iy40ymrxhmb88w31a4aacaps9f1iild42afin7i7vy4dq9"; depends=[]; }; geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; }; - geneSLOPE = derive2 { name="geneSLOPE"; version="0.37.0"; sha256="1pw6y0n1xnprz2d4hyhlp1m9grki7s9hi2f4nqxa34wynqkp4bx8"; depends=[bigmemory ggplot2 SLOPE]; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; @@ -6743,10 +6815,10 @@ in with self; { generalCorr = derive2 { name="generalCorr"; version="1.1.1"; sha256="1ihp9pksi47f3fsv7wgrp1z4ylmf5n57n6h27v130mi7k5lh1gdy"; depends=[meboot np psych xtable]; }; generalhoslem = derive2 { name="generalhoslem"; version="1.3.2"; sha256="1c6mmgdxdm384fl9yqpij3fvjzzima10knljsf50hl4q9f66lvag"; depends=[MASS reshape]; }; generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; + genesysr = derive2 { name="genesysr"; version="0.9.1"; sha256="0cwx00bikhr32h2mxnd9v5z80zjy3y9i7b30achhlrjzvylh6q4j"; depends=[httr jsonlite]; }; genetics = derive2 { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; }; genie = derive2 { name="genie"; version="1.0.4"; sha256="0ymrn42ik0rfildmyq4z0gsd7injda0dsjgx69nqb6hq0x8s5hqa"; depends=[Rcpp]; }; geniusr = derive2 { name="geniusr"; version="1.0.0"; sha256="0akz6hkw9mjwgx9s9j24j5l1z4q41kbhna2245l26ymn4cf0rwjc"; depends=[httr purrr rvest stringr tibble xml2]; }; - genlasso = derive2 { name="genlasso"; version="1.3"; sha256="1q4ybg8xzphnqwywwdb7i2q94dlxwpggvisjqqdj39jh2cabda57"; depends=[igraph MASS Matrix]; }; genlogis = derive2 { name="genlogis"; version="1.0.0"; sha256="01av5invhviii7adqihh10ib47rjzwfsqdgw3lfg1c72kzrqywgr"; depends=[distr doParallel foreach ggplot2 manipulate]; }; geno2proteo = derive2 { name="geno2proteo"; version="0.0.3"; sha256="1q054ai42f5gmrj791abj02f663zs7ymdh3pfs3b2lq6i4w9s2fb"; depends=[BiocGenerics GenomicRanges IRanges R_utils RUnit S4Vectors]; }; genoPlotR = derive2 { name="genoPlotR"; version="0.8.7"; sha256="1zplk0acismv4x528rmmg5jcv6ng6c4vjf5h0mr124fj3kizsrg0"; depends=[ade4]; }; @@ -6754,14 +6826,13 @@ in with self; { genomeplot = derive2 { name="genomeplot"; version="1.0"; sha256="15v01ngxq7kxav1bhw1mvqradrmvwsad5xh9l5skivb5smh9795w"; depends=[ggplot2]; }; genomic_autocorr = derive2 { name="genomic.autocorr"; version="1.0-1"; sha256="1lidrjz1flxw4jvhqdi8y813m7ss4kkvm7bxsdpz60dxxw3204gm"; depends=[data_table magrittr reshape]; }; genomicper = derive2 { name="genomicper"; version="1.6"; sha256="12msl6syw5a3dvxg9fr1yprcpb9qwn8v2dvkpxgagal11p9q1kx7"; depends=[DBI]; }; - genotypeR = derive2 { name="genotypeR"; version="0.0.1.6"; sha256="1y8fm3l97hrwra7a1n2gry6583r09rch1sk7vp6r9f5qwmmjc3r7"; depends=[colorspace doBy plyr reshape2 zoo]; }; + genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; }; genpathmox = derive2 { name="genpathmox"; version="0.3"; sha256="0r1iqwm5jh93lbh87ks5qm4qqsp98928vg7qmv1pkahdlvl3ramw"; depends=[diagram mice plspm quantreg]; }; genridge = derive2 { name="genridge"; version="0.6-6"; sha256="1hqarvd767h2vbjqfjzdr0548hxj87kv1073hfqyq5fybdlzsjx3"; depends=[car]; }; gensemble = derive2 { name="gensemble"; version="1.0"; sha256="0yyi7djzqx4yhxp6yy1rjgvzidjlna79ds89bgj6m6zj3aav6yw2"; depends=[]; }; gensphere = derive2 { name="gensphere"; version="1.1"; sha256="1xzli40fw94n89cv2qyb321csad1w9zidqc226wlifl2m44cw6f7"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; - gensvm = derive2 { name="gensvm"; version="0.1.0"; sha256="19qd67x3j0b60wsbinjny7jwx5yh8hdk6387fl64frnq8fvi9d60"; depends=[]; }; - geo = derive2 { name="geo"; version="1.4-3"; sha256="0yxlafm99ypwf1700nh3hnnpndb6ghwwbi5sp6715zjbkkx94482"; depends=[mapdata maps]; }; - geoBayes = derive2 { name="geoBayes"; version="0.3.3"; sha256="1jw0fj39gzf4cislc889ndgj34svcdxk0jz85ssk936g9gp0mm0c"; depends=[coda sp]; }; + gensvm = derive2 { name="gensvm"; version="0.1.1"; sha256="10ym8p1i66ppjhn039wqbpm2yvmirj3pfqmqqn7iji8s1hdxds73"; depends=[]; }; + geoBayes = derive2 { name="geoBayes"; version="0.5.1"; sha256="18m1qxzq97rddbxk99za5yfdcq6nyy4nxgikylfpsb2mxanjxyx2"; depends=[coda sp]; }; geoCount = derive2 { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp RcppArmadillo]; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; }; geoR = derive2 { name="geoR"; version="1.7-5.2"; sha256="1sy968x154bsc3i3a6mxcwnyixcnmab5bc07dgibi9vzn0nkbbpb"; depends=[MASS RandomFields sp splancs]; }; @@ -6777,7 +6848,7 @@ in with self; { geojsonR = derive2 { name="geojsonR"; version="1.0.4"; sha256="0248lb1kgj43czp5z4q7dcrq6ra0jhq62q9x79mgyb83bqn940h8"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.6.0"; sha256="10vi40ppy65yg655xy0j8zl6icn7d7icwfj4a84wpp28pd1bwic8"; depends=[geojson httr jqr jsonlite magrittr maptools readr rgdal rgeos sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; }; - geojsonsf = derive2 { name="geojsonsf"; version="0.2.0"; sha256="1jc0dgxk4zlrwy6a3y2j87a7vk9w8cnmczhaf0jdw6xymmni1faw"; depends=[rapidjsonr Rcpp]; }; + geojsonsf = derive2 { name="geojsonsf"; version="1.1"; sha256="050dcyhsjjysfp263g1f35aixrdh85zfzkg7dyhn47nr9cfgrss8"; depends=[curl rapidjsonr Rcpp]; }; geoknife = derive2 { name="geoknife"; version="1.5.5"; sha256="0azb98zk4ayfm0z9vz5h59490xvng16p3gpdn60ca9mwdikyxks3"; depends=[curl httr sp XML]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geomedb = derive2 { name="geomedb"; version="0.2"; sha256="1nsf7xzqayk8zbw3b6xpgiqk2w2kzc896gjswzxq128xw05cia0a"; depends=[ape httr]; }; @@ -6785,9 +6856,10 @@ in with self; { geometa = derive2 { name="geometa"; version="0.2-0"; sha256="1dz23jgix8sxnb69hb7jd41kdqifkf95jmcg2f6zqncqa6qg7glk"; depends=[R6 XML]; }; geometry = derive2 { name="geometry"; version="0.3-6"; sha256="0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"; depends=[magic]; }; geomnet = derive2 { name="geomnet"; version="0.2.0"; sha256="0xanzx8p34bac4zcf9j69nivwhllvsrw7x70mzgl95jhg3gvv96a"; depends=[dplyr ggplot2 network plotly readr sna tidyr]; }; - geomorph = derive2 { name="geomorph"; version="3.0.5"; sha256="015ijpmx44agmr2ddwgxy5rs1rhkxr6j6dh5wzksaw1p4mxmhfks"; depends=[ape geiger jpeg Matrix rgl]; }; + geomorph = derive2 { name="geomorph"; version="3.0.6"; sha256="1iqz8qzcdrxvz1iywkzbwia40sxj7fkw3mcncdddb9dnq016cfdy"; depends=[ape geiger jpeg Matrix rgl]; }; geonames = derive2 { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; }; - geoops = derive2 { name="geoops"; version="0.1.8"; sha256="1n863z83y19bn97clfddhv009c8d6a1grya0q5pk0a6ylihcw11h"; depends=[Rcpp]; }; + geonapi = derive2 { name="geonapi"; version="0.1-0"; sha256="1i0pr4zrl06ym947parxk083f1b5p58bdbpm842viq1qqwavfj6z"; depends=[geometa httr openssl R6 XML]; }; + geoops = derive2 { name="geoops"; version="0.2.0"; sha256="0n9n0j849jbqv6y6lqhyhddr5zfz8i9yi03gpg9862nzkvxd3c4k"; depends=[Rcpp]; }; geoparser = derive2 { name="geoparser"; version="0.1.1"; sha256="0rk2wcig79r28a974bc181p8vypxzbgxcb9rsp24qj9mg02rn5n5"; depends=[digest dplyr httr jsonlite lazyeval purrr stringr tidyr]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; georob = derive2 { name="georob"; version="0.3-6"; sha256="01gq9ymqk3zyjs5n7nj27ky2bnhc7x7npbipa5bcq7jda6gxirhr"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; @@ -6808,15 +6880,15 @@ in with self; { germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.0"; sha256="1s6mygiwmz2cgg2dcsah4ssnj5hfilf7hfdzvv3qd57imicrlkk5"; depends=[broom ggplot2 ggrepel minpack_lm plyr Rdpack]; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; }; gesis = derive2 { name="gesis"; version="0.2.1"; sha256="1cdmhfdjiwsp48a7b0r1mnagnymz606mkzpam9fsvfl72vzji2w7"; depends=[httr rvest xml2]; }; - getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.2.2"; sha256="14rw7pdcan4bdjfb16z3h0acx2s8l34vywsp4nn8l1pmmsvgqpap"; depends=[data_table dplyr hoardr httr raster tibble tidyr]; }; + gestalt = derive2 { name="gestalt"; version="0.1.1"; sha256="0gcvd61dyyq29gf2v3kg1y474diwi0hl28rb4w8zf11ac9lc0jvz"; depends=[rlang]; }; + getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.2.4"; sha256="1468bxmy2iv1kzjnyh5y035lxmi8wfssjk0cjx63i6dg38bhq4cz"; depends=[data_table dplyr hoardr httr raster tibble tidyr]; }; getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; }; getPass = derive2 { name="getPass"; version="0.2-2"; sha256="03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc"; depends=[rstudioapi]; }; - getTBinR = derive2 { name="getTBinR"; version="0.5.3"; sha256="0yn8abdixckp32yicp1b5bqmdl4l9s3f67jb8d70yy77kyckzw3m"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble viridis]; }; - getlandsat = derive2 { name="getlandsat"; version="0.1.0"; sha256="0h2520r5sqyzsajqw2i86byw9zm5za27mhjkrzzw5vr5sh1vdiwb"; depends=[data_table httr rappdirs readr tibble xml2]; }; + getTBinR = derive2 { name="getTBinR"; version="0.5.4"; sha256="1xf5b98j4b07namkhmzwmp1xhsn9g42p2zy38xhz4823x13q9yn6"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble tidyr viridis]; }; + getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.1.1"; sha256="14w0n658s624anvxv7sqcgy6vfaaxcc7fj4xi1k2qrxd9rdh6dza"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.2"; sha256="13p35lbpy7i578752fa71sbfvcsqw5qfa9p6kf8b5m3c5p9i4v1x"; depends=[]; }; gets = derive2 { name="gets"; version="0.15"; sha256="1sz225bymjp2mrklpjagh6x622kpcvh21r0rmimd1mjhqbg0p9vs"; depends=[zoo]; }; - gettingtothebottom = derive2 { name="gettingtothebottom"; version="3.2"; sha256="1cz2vidh7k346qc38wszs2dg6lvya249hvcsn6zdpbx0c0qs3y72"; depends=[ggplot2 Matrix]; }; gettz = derive2 { name="gettz"; version="0.0.3"; sha256="1i06nfm824131q8lwwhrbzg2g9lbnmyp8k57w2vag7v8jj5rdrda"; depends=[]; }; gfcanalysis = derive2 { name="gfcanalysis"; version="1.4"; sha256="1hjgbiakf01mmaa2jhlnymcsjsj1zssay44p4sdxxxzpx4szs3vv"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; gfer = derive2 { name="gfer"; version="0.1.10"; sha256="1y0ra8k7zka43ibiii16vbwnc3m1i77yc9zj8rhzhmvhajjwad3l"; depends=[circlize data_table ggplot2 ggrepel googlesheets gsheet httr jsonlite rvest scatterpie stringi tidyr V8 xml2]; }; @@ -6838,25 +6910,28 @@ in with self; { ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.1"; sha256="04jq1qpsgy8bgpilp1a02va4vz0adkjwrz9znmhv54q81qiv7h51"; depends=[ggplot2 reshape2]; }; ggdag = derive2 { name="ggdag"; version="0.1.0"; sha256="0ja3v8pmlzl55n8y8n9zcg5n17w8w4vdq42bqf6h8hgyqj63rcg9"; depends=[dagitty dplyr forcats ggforce ggplot2 ggraph ggrepel igraph magrittr plyr purrr stringr tibble tidygraph]; }; ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; }; + ggdistribute = derive2 { name="ggdistribute"; version="1.0.2"; sha256="1cwm2fmpx5dvmg4jnydfp8d584dhhprb589p5ia9zf1fblc4jvvw"; depends=[data_table dplyr ggplot2 magrittr tibble]; }; ggdmc = derive2 { name="ggdmc"; version="0.1.3.9"; sha256="07a9g6kwq4hg5zlcxndwmyprl3di7fzsn2960qyixn5bzrfk7sh2"; depends=[coda ggmcmc ggplot2 ggthemes gridExtra loo Rcpp RcppArmadillo rtdists]; }; - gge = derive2 { name="gge"; version="1.3"; sha256="0bqclmm4jr7y52n7qh4jikd0804iccjdpy55bvbc2k8ypsp2biik"; depends=[nipals reshape2 rgl]; }; - ggedit = derive2 { name="ggedit"; version="0.2.1"; sha256="0l2ryp8xcyqsgfcywr3y6c2y8j42c15dyrcmfhfimbzy52bmnqxy"; depends=[colourpicker dplyr ggplot2 miniUI plyr reshape2 rstudioapi scales shiny shinyAce shinyBS]; }; - ggeffects = derive2 { name="ggeffects"; version="0.3.2"; sha256="07xrbl8z5ap5yy40wdz4gcwmmmj66c01qv8jdn0smjf06xavbr0n"; depends=[dplyr effects ggplot2 magrittr prediction purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr tidyselect]; }; + gge = derive2 { name="gge"; version="1.4"; sha256="0plwk5j2n0309ghgn8r4ws3azwn7n4jb7yfykiiwwalhs3k05lsa"; depends=[nipals reshape2 rgl]; }; + ggedit = derive2 { name="ggedit"; version="0.3.0"; sha256="1v9apfkm47jcqyhjrvv8ig09gz6zsss5xj5mrckfjybd5ca08rzn"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; + ggeffects = derive2 { name="ggeffects"; version="0.4.0"; sha256="0w2w0vwbpcwm9nqvsr2ksyary8ah6ar5gw233sbc8m3z3zx33qc1"; depends=[dplyr effects ggplot2 magrittr prediction purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr tidyselect]; }; ggenealogy = derive2 { name="ggenealogy"; version="0.3.0"; sha256="169zkcp13g0ll9941a7hh31fll0mavnkb6fd3kvkibdjm621ymyh"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; - ggfan = derive2 { name="ggfan"; version="0.1.1"; sha256="0sqf37afz9kpl2wm3cpansav9ndil8agwrblzj0fhnyrj41s148n"; depends=[colorspace dplyr ggplot2 rstan]; }; + ggetho = derive2 { name="ggetho"; version="0.3.2"; sha256="1279y9mc4jvdpncy4xi80c2jbhkd1cv5k8hz5187dxq45ksan2bg"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; + ggfan = derive2 { name="ggfan"; version="0.1.2"; sha256="0agk9r2g8gh5ixg25rix362c7hj8b255w3ff7iawinsndf0dmwpy"; depends=[colorspace dplyr ggplot2 rstan]; }; ggfittext = derive2 { name="ggfittext"; version="0.5.0"; sha256="0ih6mqg53y5iaiq003wbzp6qqx4844yh5z9zw5d0k7gqclprmpn5"; depends=[ggplot2 stringi]; }; - ggforce = derive2 { name="ggforce"; version="0.1.1"; sha256="0y49anv5sj1qn1ifcxg1krkkv4z3dlan5lya36vfmzzdamfgq5p6"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; - ggformula = derive2 { name="ggformula"; version="0.6.2"; sha256="08smdd3s8dh3qjcm25v8h1r8pfvlfvkymnbhlyw4bymq479g4w0j"; depends=[ggplot2 magrittr mosaicCore rlang stringr tibble]; }; - ggfortify = derive2 { name="ggfortify"; version="0.4.4"; sha256="12fzf04yqxz0297pq4cpbnxal1vdmibi9nfcmzq5g35diypqwmg9"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; - gggenes = derive2 { name="gggenes"; version="0.2.0"; sha256="1s3lkdl9wmhcdra90bv8zzb16h2sdmpr15x8c3d0gfw7yir6prj2"; depends=[ggplot2]; }; + ggfocus = derive2 { name="ggfocus"; version="0.8"; sha256="1gzx9hiaxni7d90wb9apqzw4rxc32gk5nrjxkgvwv52m999jh2wc"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; + ggforce = derive2 { name="ggforce"; version="0.1.2"; sha256="1asz6mkgq47hp3c52dyqvzd8fyimid1by0jj263br0k0c572na9w"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; + ggformula = derive2 { name="ggformula"; version="0.8.0"; sha256="0rfkg5viznb98rd2xkq8mg8qvmxc8xm0jmiwwjfa3x2ngivgvwnw"; depends=[dplyr ggplot2 magrittr mosaicCore rlang stringr tibble]; }; + ggfortify = derive2 { name="ggfortify"; version="0.4.5"; sha256="1mqgikpg34czz0zj4q3yh4xq9iw2x9zkz00ss27r6pmi6zipb6rm"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; + gggenes = derive2 { name="gggenes"; version="0.3.1"; sha256="14a3j4cjv6b4na4j1wasm3cc566armgqc81s1yy756xc9k9sp4a9"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; - gghighlight = derive2 { name="gghighlight"; version="0.0.1"; sha256="12by8q31fl2kc6w5p72wvd2nxg1cpvhgdbais6hjly1sxi8jd6zp"; depends=[dplyr ggplot2 ggrepel magrittr purrr rlang]; }; - ggimage = derive2 { name="ggimage"; version="0.1.4"; sha256="0bwzzd7f4knjg7jifsmqwbd0kbca1n5f8f4s068d6mahaff5d9mn"; depends=[base2grob ggplot2 gridGraphics magick rvcheck scales tibble]; }; - ggiraph = derive2 { name="ggiraph"; version="0.4.2"; sha256="0bk6q0psxzggm69yyhfw047xyygp23rk63xvdd9dv6avndfn1h7n"; depends=[ggplot2 htmltools htmlwidgets rvg xml2]; }; + gghighlight = derive2 { name="gghighlight"; version="0.1.0"; sha256="1mfjvfm5xbih7k7qz6x8akbqgh0b18dz9pybfgh7rbq2ppwnhpy9"; depends=[dplyr ggplot2 ggrepel magrittr purrr rlang tibble]; }; + ggimage = derive2 { name="ggimage"; version="0.1.7"; sha256="08xipid3n1ab2k2xs1ip3wgbdhw2ccsm49s62ygyqjp3z0cvbn2s"; depends=[ggplot2 ggplotify gridGraphics magick rvcheck scales tibble]; }; + ggiraph = derive2 { name="ggiraph"; version="0.4.3"; sha256="0mjzx4jhfjr1mb19cgl70g5hfznnshbf08hvlg6hhbavlsk8fclp"; depends=[ggplot2 htmltools htmlwidgets rvg xml2]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.1.0"; sha256="09fiwkaai4sy5kxy4p0c4ldb8ya63czff53hbm6d8fm858fw2byw"; depends=[ggiraph ggplot2 mapproj mgcv moonBook mycor plyr reshape2 scales XML]; }; - ggjoy = derive2 { name="ggjoy"; version="0.4.0"; sha256="1s24zn7gmk52bvjjhanxby7rxbnc2yfl0nx5nv7x7z0zja8gg7nb"; depends=[ggplot2 ggridges]; }; + ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.4"; sha256="0r4zfgkys8104iw1vzww3qid8a6dyn03x0jlgwrdvavfj86yhq54"; depends=[]; }; gglogo = derive2 { name="gglogo"; version="0.1.3"; sha256="1dq0bixz44p32kpma5wrqjqklal2ipjmqdwqap0xch542drlpqbn"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2]; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; }; @@ -6868,54 +6943,57 @@ in with self; { ggmuller = derive2 { name="ggmuller"; version="0.5.1"; sha256="1wa4gcyzbwy1s200w57phahh6rwaf62qn3i400xywkf34fsi1il8"; depends=[ape dplyr ggplot2]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.1"; sha256="13qisn4msjzkpcmn7rh2c4ymqfxp9bayrvqngp9pysfmr6wvc6ia"; depends=[ggplot2 ggrepel network sna]; }; ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; - ggplot2 = derive2 { name="ggplot2"; version="2.2.1"; sha256="0543782ddv2hp6s0l702mnxfg8n7a6qlbm8bm55x22hnqgz8kg2z"; depends=[digest gtable lazyeval MASS plyr reshape2 scales tibble]; }; + ggplot2 = derive2 { name="ggplot2"; version="3.0.0"; sha256="0kb977hizsvk3b1k3zr717q78bpmbabhl8cj9a3w717nkq1zas67"; depends=[digest gtable lazyeval MASS mgcv plyr reshape2 rlang scales tibble viridisLite withr]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.2.16"; sha256="1hq5zpc3zf4hq49ykrzrgj92cmh6gjsq6kpzcvzvnm5wyh9yy2iq"; depends=[broom dplyr ggplot2 lubridate MASS plyr polynom splus2R tibble xts zoo]; }; + ggplotify = derive2 { name="ggplotify"; version="0.0.2"; sha256="00qkm0jlhxgihncrygmkahqq0dm6kiyfw00iyrfw0khrd4khpahb"; depends=[ggplot2 gridGraphics rvcheck]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.2.17"; sha256="1lx5a0n00994pp16jgz4c5xxsj8px6l9wl0cdsr0dr1d43lqywq1"; depends=[broom devtools dplyr ggplot2 gridExtra lubridate magrittr MASS plyr polynom rlang splus2R tibble xts zoo]; }; + ggpol = derive2 { name="ggpol"; version="0.0.2"; sha256="0viq6k5xswhb7dzzjwr59kc7lw6312x015lbx64y3vx71ncbrgkz"; depends=[dplyr ggplot2 gtable plyr rlang]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; - ggpubr = derive2 { name="ggpubr"; version="0.1.6"; sha256="0mvw215bj887958p34f0dzlrb8mgyfcz9b5zvsschvbhamqinqna"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif gridExtra magrittr purrr scales tidyr]; }; + ggpubr = derive2 { name="ggpubr"; version="0.1.7"; sha256="110ny8p41kmbz0a5rl0mv9cqpjkx6yr3ybflp1r0fmcvhwv7cr3i"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif gridExtra magrittr purrr scales tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.0"; sha256="1nwf3cz1258khp1barxxp28326bagvlsfhg4rcccbxcpny9vbl7d"; depends=[data_table ggplot2]; }; + ggquickeda = derive2 { name="ggquickeda"; version="0.1.0"; sha256="00j6gpika8x2yplnirj06vrc55aljcdhd2ln7081kym8xsfrjd2h"; depends=[colourpicker dplyr DT Formula ggplot2 ggrepel gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjs stringr survival tidyr]; }; ggquiver = derive2 { name="ggquiver"; version="0.1.0"; sha256="0p6li7cxjy54qrmaf9ja6aknnlxwq4sl0z1yip1mznb5rhv6lpxw"; depends=[dplyr ggplot2]; }; ggraph = derive2 { name="ggraph"; version="1.0.1"; sha256="0sm1hf2fjfia0s8m5b1x6pi8wvww77rpck86clpa2figwvck8jqr"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; }; - ggraptR = derive2 { name="ggraptR"; version="1.0"; sha256="1n3ildrm8jh6m1j8njx1icbjhpkv3d2ndx59d6ddyg4np09cmp8w"; depends=[assertthat backports colorspace colourpicker DBI dplyr DT evaluate futile_logger futile_options gdtools GGally ggplot2 ggthemes gtable htmltools htmlwidgets httpuv labeling lambda_r lazyeval magrittr miniUI munsell plyr RColorBrewer Rcpp reshape rmarkdown rprojroot scales shiny shinyBS shinyjs stringi stringr svglite tibble xtable yaml]; }; - ggrepel = derive2 { name="ggrepel"; version="0.7.0"; sha256="0g0qfm6g71rv27423c1x846ipilnj213knyzrcr09vrpxc87l618"; depends=[ggplot2 Rcpp scales]; }; + ggraptR = derive2 { name="ggraptR"; version="1.1"; sha256="1lknd3vibysc00c6b59c0yq2r3dda7zn8bj7gxjzjv90jwpgl0b8"; depends=[dplyr ggplot2 pacman purrr shiny]; }; + ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; + ggrepel = derive2 { name="ggrepel"; version="0.8.0"; sha256="1m3p84d6nh9mzzvxb82vgig3ngcvkz86rjwzl9a66ckdf5p611k3"; depends=[ggplot2 Rcpp scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.0"; sha256="1znvsbl3px8dddpjgdrygnpz4s685wizi0jnjvx2hrz58i0chjqj"; depends=[ggplot2 plyr scales withr]; }; - ggsci = derive2 { name="ggsci"; version="2.8"; sha256="1s2asx9aprpzs6xqbl7yb1dv9ci9ivwqcq46fzvys8zgwzf7mkml"; depends=[ggplot2 scales]; }; - ggseas = derive2 { name="ggseas"; version="0.5.1"; sha256="1r23j701rvia49si42fbi6zws7x9r92h1bcp0a15h28hpl7zlp7l"; depends=[ggplot2 seasonal zoo]; }; + ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; }; + ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggsignif = derive2 { name="ggsignif"; version="0.4.0"; sha256="1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.4.0"; sha256="0si3llqlb0dg482cqxhv5lm6raawqwpcd5ymjicw3780xq7d7mrk"; depends=[ggplot2 maptools png]; }; ggspatial = derive2 { name="ggspatial"; version="0.2.1"; sha256="11vminz4kwv1ny4v9h23sp7j7d45q6v4804xv9fp04qgzbzi9lv8"; depends=[abind ggplot2 maptools plyr raster reshape2 rgdal rosm scales sp]; }; - ggspectra = derive2 { name="ggspectra"; version="0.2.3"; sha256="11y2vlcpxyh56pdfzz11bkip2nxv6rrwscqv48p5fvgn9sllly4q"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands reshape2 scales tidyr]; }; + ggspectra = derive2 { name="ggspectra"; version="0.2.4-1"; sha256="0jp1zfzsnpnvcyw4m7cn4d871pqsniyrhv3j5riir6fa4ll4nmcb"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; }; ggstance = derive2 { name="ggstance"; version="0.3"; sha256="0sr84nasr8x8ib3mdsjck73gbfg9xba50s5nxdij0ah9xqnpyhpi"; depends=[ggplot2 lazyeval plyr purrr]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.1"; sha256="07fpavl7735a7fhaiybf55125afs40ai8sag32xxsf8d24i5zl2s"; depends=[apaTables broom coin cowplot crayon DescTools dplyr effsize ggcorrplot ggExtra ggplot2 ggrepel gtable jmv magrittr MASS nortest purrr rlang RVAideMemoire sfsmisc tibble tidyr userfriendlyscience WRS2]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.4"; sha256="19rr5cq9s9w4ivdr42ia0vqf62vsq0l1d3f3icp0zy0r9jzsdfwp"; depends=[apaTables boot broom coin cowplot crayon dplyr effsize ggcorrplot ggExtra ggplot2 ggrepel glue gtable jmv lmerTest magrittr MBESS purrr purrrlyr rlang scales sjstats tibble tidyr WRS2]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="2.2.1"; sha256="05dszysn1qr5s4ji4il91pv19xjh5yd09w9f153fmg4cyfl716iz"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; - ggthemes = derive2 { name="ggthemes"; version="3.4.2"; sha256="0i7ygpizs00acizixc29bhbrci523ys7vzxbii9b3bcmfa3pj7i3"; depends=[assertthat colorspace ggplot2 scales]; }; + ggthemes = derive2 { name="ggthemes"; version="3.5.0"; sha256="0drbzzb4i5jq1579fx1wmgh87ybnswjn7srak2l8g771ip49xwb8"; depends=[assertthat colorspace ggplot2 scales]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; ggvis = derive2 { name="ggvis"; version="0.4.3"; sha256="1p7c8f83da30grj5n0v80p5djp6z0r62z5zqpv2a3ahn61w1gm9l"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; gh = derive2 { name="gh"; version="1.0.1"; sha256="1llinfajb0g7006jd2w1hpskxpmkjhnqarcjb71r1qvsccb2ph7k"; depends=[httr ini jsonlite]; }; ghibli = derive2 { name="ghibli"; version="0.1.1"; sha256="1jnl017hkzhiic0fndprs68xx3njlijxkaqj9d65xazcwynaq436"; depends=[ggplot2]; }; - ghit = derive2 { name="ghit"; version="0.2.18"; sha256="117dn7j4nsdbdj1c1zndfikih3gxgxnkdxi3z0qmrbpsb9l4h1ic"; depends=[git2r]; }; ghyp = derive2 { name="ghyp"; version="1.5.7"; sha256="195hsskh2ykafqr93f675xqsmhbrki3abi61hk78bzy09n1d4jfk"; depends=[gplots numDeriv]; }; giRaph = derive2 { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; gibble = derive2 { name="gibble"; version="0.0.2"; sha256="0a9h3q0kwk9aagcpnmih59vbm5n7hdjpa4idwagky351almblmr6"; depends=[dplyr tibble]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.7.5"; sha256="1y64bc33b5f64a4khp916s9zb7kbb24xgdg3pdlh0f8m6zrbmp4a"; depends=[base64enc R_utils xml2]; }; gim = derive2 { name="gim"; version="0.11.0"; sha256="1psmziq03k1nbdl64sy152ih4g625qkbp5l7msfibrcbpgz0hg7y"; depends=[numDeriv]; }; - gimme = derive2 { name="gimme"; version="0.3-3"; sha256="0czms27yfv0iwwqljfpa21qx83282ky4misccbln4cxziyw1n7yz"; depends=[igraph lavaan qgraph]; }; + gimme = derive2 { name="gimme"; version="0.4-1"; sha256="1b1f92v54r9aqbwia549abjiw712ps4s58yw2n9p9894m4ijc88v"; depends=[igraph lavaan qgraph]; }; gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.1.0"; sha256="0mqffqvaapb0m0d50vg4kvdp67yq99qf54f5anwq4md0rf3x8lid"; depends=[curl Kendall ncdf4 raster RCurl zyp]; }; giphyr = derive2 { name="giphyr"; version="0.1.2"; sha256="1id3r291xyj1ylxgmw2cbazaz0jq4bksj8bijwagcawimfxibz45"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; - gistr = derive2 { name="gistr"; version="0.4.0"; sha256="1q1wp3q3ppkclvw9fsc9pr5raqv2r9rdm2n8s197b8brfcjilxsi"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; + gistr = derive2 { name="gistr"; version="0.4.2"; sha256="0bh325pf37v307isdlvdglripfki8xr6gh7n8mgi4cjparzhrh23"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; git2r = derive2 { name="git2r"; version="0.21.0"; sha256="11xgddmxzh9cy85k8fb90il43qswpvryz0h9r0j1gbclfg2f9004"; depends=[]; }; gitgadget = derive2 { name="gitgadget"; version="0.2.1"; sha256="02jmp5lnk156sfqlv91jn42xds98ihya1x2f97cfwpzlas5qrxky"; depends=[curl dplyr jsonlite miniUI rstudioapi shiny]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; gitlabr = derive2 { name="gitlabr"; version="0.9"; sha256="0i9sqqvn9xzknybsj9nmi6kclw8c35shy658li17455d28gv4653"; depends=[base64enc dplyr httr magrittr purrr stringr tibble yaml]; }; gitter = derive2 { name="gitter"; version="1.1.1"; sha256="10m4rs6mhg7xn8dfd41ai0bnn5bnxn6cgqip22hrrpj0i2lzky6l"; depends=[EBImage ggplot2 jpeg logging PET tiff]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; - gjam = derive2 { name="gjam"; version="2.2.1"; sha256="0xjkssxgpcpn37amkjwi5cjdx5b8lkgjaw2lm4wyjjfn59jj3d14"; depends=[MASS RANN Rcpp RcppArmadillo]; }; + gjam = derive2 { name="gjam"; version="2.2.4"; sha256="16gfb199mhpg0yp7xy9x8nlpcfmhkks92fwfa1ryv6plkzn6rhkl"; depends=[MASS RANN Rcpp RcppArmadillo]; }; gk = derive2 { name="gk"; version="0.5.1"; sha256="1hgxb1lp78pbnj22i7ryf46im301j05y7hh75z2fxvv5nqgg2v75"; depends=[Ecdat lubridate progress]; }; gkmSVM = derive2 { name="gkmSVM"; version="0.79.0"; sha256="04dakbgfvfalz4rm4fvvybp506dn5fbj5g86ybfhrc6wywjllsz3"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges kernlab Rcpp ROCR rtracklayer S4Vectors seqinr]; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; }; @@ -6927,12 +7005,12 @@ in with self; { glcm = derive2 { name="glcm"; version="1.6.1"; sha256="0xzfhafc7326v3g1xngp584039iknw3q3bcx8f0j4ig125in7sxk"; depends=[Rcpp RcppArmadillo]; }; gld = derive2 { name="gld"; version="2.4.1"; sha256="0ycm3w8s5bm5w2lqy0qa877cwjcwc9x1zyyyrknwwjjxip250iaw"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; - glinternet = derive2 { name="glinternet"; version="1.0.7"; sha256="0kvhkhkhf5bmqvhxiz83cqw478s55gbkk3s2csa9bnz8ymkcn3f4"; depends=[]; }; + glinternet = derive2 { name="glinternet"; version="1.0.8"; sha256="06ak80j01cbrr6s8hmcc734z476rrqzib0xqjgv7c3jbw0api71y"; depends=[]; }; gllm = derive2 { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2im6cspvfpafzc8krmh17zq4ins"; depends=[]; }; gllvm = derive2 { name="gllvm"; version="0.1.0"; sha256="13ca5ms6bbrj3ny5n438v5ma0d7ccnghysz7c8452cpdq8sn87iy"; depends=[fishMod MASS Matrix mvabund mvtnorm Rcpp RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; - glm_predict = derive2 { name="glm.predict"; version="3.0-0"; sha256="1kqh8g7mrpfnzklk23x7ckbn5p2qcw951cg4s9gnlncggby864ig"; depends=[MASS nnet]; }; - glm2 = derive2 { name="glm2"; version="1.1.3"; sha256="0mmvba1ccmykm2k02ysjbiqj1lwzdwrbxr1hq1kn1gl97xlarp2x"; depends=[]; }; + glm_predict = derive2 { name="glm.predict"; version="3.0-1"; sha256="0miba0xha99rmriqs7ifriq86ykn04j04f3ywk29bpph4iwc5faq"; depends=[MASS nnet]; }; + glm2 = derive2 { name="glm2"; version="1.2"; sha256="09bjqz7zih644hba27illlmzfcs94q5h4fdplg948adi1z790las"; depends=[]; }; glmBfp = derive2 { name="glmBfp"; version="0.0-51"; sha256="15jm450j1f0nl7vqvpb2mwapdlvn7kq2kxf5s96x21siwsz7sssv"; depends=[coda Rcpp RcppArmadillo rms Runuran statmod survival]; }; glmbb = derive2 { name="glmbb"; version="0.3"; sha256="12yabwswps0fmprh8nb9jdny9xrm13jvc0d9m3w04ppmsvalrmwl"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.2-4"; sha256="03m1ym9w0b0gqib13pnh1yrjijlcwsn5lijg0nsr4hd6gxw29cla"; depends=[emplik]; }; @@ -6941,16 +7019,19 @@ in with self; { glmgraph = derive2 { name="glmgraph"; version="1.0.3"; sha256="16sq6i7kbw20nvwikpa02z3pb7wqw3270j6ss7f8sgf548skhmx0"; depends=[Rcpp RcppArmadillo]; }; glmlep = derive2 { name="glmlep"; version="0.1"; sha256="0jnm3cf2r9fyncxzpk87g4pnxbryqcxxrc5y2a80pv48al3sxlzk"; depends=[]; }; glmm = derive2 { name="glmm"; version="1.2.3"; sha256="0cxlcx09a5vypv6kkcfvfjdpz2rnxhay0pjv6q53hdmbshmchbmj"; depends=[digest Matrix mvtnorm trust]; }; - glmmBUGS = derive2 { name="glmmBUGS"; version="2.4.0"; sha256="1clnnf0ja2xiqdgi2f1xs04hhi13rnp8jzzdjncbqbdzk2ic3ynl"; depends=[abind MASS sp]; }; + glmmBUGS = derive2 { name="glmmBUGS"; version="2.4.2"; sha256="1c4nxm6hv2x9acjss9psnh87ldsrxidnrxn01rjxbmihziyirp0y"; depends=[abind MASS sp]; }; + glmmEP = derive2 { name="glmmEP"; version="1.0-1"; sha256="0w6q504map1frx7ch2gb7557xmc361lngsw2f80bnrlchj43rdgg"; depends=[lme4 matrixcalc]; }; glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; }; glmmML = derive2 { name="glmmML"; version="1.0.3"; sha256="1svawi74rfir9czqyf194wmh4fw053n81j7prnanyfskrchkd94k"; depends=[]; }; - glmmTMB = derive2 { name="glmmTMB"; version="0.2.0"; sha256="1yqizxjapdh0n872d26bdgn8a04xc6647mnjhb40g0jj59qgmxrc"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; + glmmTMB = derive2 { name="glmmTMB"; version="0.2.2.0"; sha256="1clpkjlmsjmn3m1z5jqv8cgw6bvpqsy4nx6k947r0jya017ny5y5"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; + glmmboot = derive2 { name="glmmboot"; version="0.1.2"; sha256="0c7in0sq7q1dfgk316j0aizycn8mdpjknf1yfp3d670g3275sx87"; depends=[]; }; + glmmfields = derive2 { name="glmmfields"; version="0.1.0"; sha256="1b7p1srwavpqm2468n4sxhbm988pxz7zvj76h86fig1jdqf9hlix"; depends=[assertthat BH broom cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstanarm StanHeaders]; }; glmmsr = derive2 { name="glmmsr"; version="0.2.2"; sha256="05psf6yjsp3zgh7lfdh2pk1zycp7rgdk61ccm7059f60dzg182b9"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; glmnet = derive2 { name="glmnet"; version="2.0-16"; sha256="1brr51z1fzbpyj6myyir4g6dhbp6xwl7nx4xnvrjarnf5y0csk55"; depends=[foreach Matrix]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1"; sha256="0abvxkwfadh56672qh16vql49js9ar8cz8is0bs6i8jgsl5csz91"; depends=[glmnet Matrix]; }; - glmnetcr = derive2 { name="glmnetcr"; version="1.0.3"; sha256="0w04m0q7w5xxm0yv14f2g1ykpy54pxzdplr0xcz9mn43wi4sl65a"; depends=[glmnet]; }; + glmnetcr = derive2 { name="glmnetcr"; version="1.0.4"; sha256="1fizw48lwhdyzfdmhl1hhcv7pfjf2zm8b96m2hcwm1ckvshf5j76"; depends=[glmnet]; }; glmpath = derive2 { name="glmpath"; version="0.98"; sha256="1jbiqqd1s93i941dhyyx50zlgwavhyjfw8bx13z4gz05rdvi4gn8"; depends=[survival]; }; - glmpathcr = derive2 { name="glmpathcr"; version="1.0.5"; sha256="0iygw7nj2bin66dh3jwz7p2nwrrz2lir0nmbgk3a2rv3w982r01q"; depends=[glmpath]; }; + glmpathcr = derive2 { name="glmpathcr"; version="1.0.7"; sha256="18i0ivvxyirgbp5qjc2av1wanang9pbjimwva448ighad7m2dsqr"; depends=[glmpath]; }; glmtlp = derive2 { name="glmtlp"; version="1.1"; sha256="01kyw0xipyr9z7x9z41wz7rqargzqd8s8ri34ffdvd3ggrdznl0p"; depends=[glmnet]; }; glmulti = derive2 { name="glmulti"; version="1.0.7"; sha256="154s72sjp6pz7ki7s4mgn5v62j7h0lfz9mngf40wvmy31da2s8ix"; depends=[rJava]; }; glmvsd = derive2 { name="glmvsd"; version="1.4"; sha256="03axsn85axs4d6fdlr3wcdwq6qa4991svkqc7k9r52kk1ar0w5zz"; depends=[brglm glmnet MASS ncvreg]; }; @@ -6958,7 +7039,7 @@ in with self; { globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globalboosttest = derive2 { name="globalboosttest"; version="1.1-0"; sha256="1k7kgnday27sn6s1agzlj94asww81655d2zprx6qg7liv677bxvf"; depends=[mboost survival]; }; - globals = derive2 { name="globals"; version="0.11.0"; sha256="17spygv9m3mmn01cfxrm05pvny5ddzvr78c60hixqbfh8385na5c"; depends=[codetools]; }; + globals = derive2 { name="globals"; version="0.12.1"; sha256="1yfgxnvrd0xnl5ir5835lna3a1zwy0s2apibi270mj5sflrlfwia"; depends=[codetools]; }; globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.0"; sha256="0173wljx13jali2jxz4k5za89hc64n2j9djz5bcryrqhq4rmkp87"; depends=[]; }; @@ -6973,12 +7054,12 @@ in with self; { gmfd = derive2 { name="gmfd"; version="1.0.1"; sha256="03sag09x7pjyzsp6w1z06108ig068krmw75064cnl3pqfvfyjfgr"; depends=[]; }; gmm = derive2 { name="gmm"; version="1.6-2"; sha256="0pbimp4g5hpi949m6dpwwds3a9dv2m4iwwg2gbqq1m62fs18hbxi"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-3"; sha256="05p2kikv8zz9ldc6xi5bz7fyinpd0sp2v82hxhx6h54hfa6i7b9v"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; - gmodels = derive2 { name="gmodels"; version="2.16.2"; sha256="0zf4krlvdywny5p5hnkr0r0hync6dvzc9yy4dfywaxmkpna8h0db"; depends=[gdata MASS]; }; + gmodels = derive2 { name="gmodels"; version="2.18.1"; sha256="0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2"; depends=[gdata MASS]; }; gmp = derive2 { name="gmp"; version="0.5-13.1"; sha256="0xh9dli4i7hyjywsn2h780cxl3k7v0q421djyr1wshk7l9s5701g"; depends=[]; }; gmt = derive2 { name="gmt"; version="2.0-1"; sha256="1g1sj9gq3h3s0pdcfvzg7iifkns5azn3pa83if0d3yzc28cjf0yz"; depends=[]; }; - gnFit = derive2 { name="gnFit"; version="0.1.0"; sha256="05hbzxxv8443w51mwpdcdk3gyc9bh8va6i65wydw7msdk69daqxs"; depends=[ismev rmutil]; }; + gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.0"; sha256="0fv89cvbnp9n3lgg6y4sqmz9jzcgwj7vd92rwg7hixwrjyqpan4z"; depends=[rmutil]; }; - gnm = derive2 { name="gnm"; version="1.0-8"; sha256="1581lzkb1v3y0arrq7x1bg7c91cii87bifxcdi1jzyc5rxj261la"; depends=[MASS Matrix nnet qvcalc relimp]; }; + gnm = derive2 { name="gnm"; version="1.1-0"; sha256="01d7wxsh4d9w4jh8vn62sjzgpll650yl3klfhlaa8j0qwpxr2fml"; depends=[MASS Matrix nnet qvcalc relimp]; }; gnmf = derive2 { name="gnmf"; version="0.7.1"; sha256="1vbcsxg61mlsdir8szd0rdxfswr7kr6a07750ar2l9b4rkg3yfqz"; depends=[]; }; gnorm = derive2 { name="gnorm"; version="1.0.0"; sha256="17h43qwb07wk5hiif89k6dgn6bbdsqfy2jy3k5blbdhhp3b9jcqp"; depends=[]; }; gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; @@ -6991,41 +7072,41 @@ in with self; { goft = derive2 { name="goft"; version="1.3.4"; sha256="15n1av7r6w8hihxlgw9pd570qgrlcprkkacln15chvjs3b0i60la"; depends=[fitdistrplus]; }; goftest = derive2 { name="goftest"; version="1.1-1"; sha256="183imn6dy28ama8bywxgyh32vgakv7bsbz4k5qbhnlhqdvzv2v6v"; depends=[]; }; goftte = derive2 { name="goftte"; version="1.0.5"; sha256="0mqibs8kpj8qq3wpnlpfdzxx33q77clwli1q7yaxllwzbq0b99hw"; depends=[survival]; }; - gogamer = derive2 { name="gogamer"; version="0.4.3"; sha256="0p11pxwc4vnmf2hh0zxv99qlqkqiszqawh8scw4v861i8ihp84iz"; depends=[dplyr ggplot2 gridExtra magrittr Rcpp scales stringr]; }; gogarch = derive2 { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; }; gomms = derive2 { name="gomms"; version="1.0"; sha256="1i9d5y28wrhal990x7xxy99v3z9y2pzlakj7wnynd3dpx5pqr0jj"; depends=[]; }; + goodpractice = derive2 { name="goodpractice"; version="1.0.2"; sha256="08rnm8z0pry5mwpc7p37r6f2rd56dry9djpcvvs9yl170w56psx0"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.5.0"; sha256="183wywvsfq58yn8hj6kz83c3by36w8knckndwbih2xhxqqqj3cf0"; depends=[assertthat dplyr googleAuthR httr magrittr memoise purrr rlang tidyr]; }; - googleAuthR = derive2 { name="googleAuthR"; version="0.6.2"; sha256="14a236yz0610rh98f80prcnc2401zy52rw326wvk11ghl3w1f88z"; depends=[assertthat digest httr jsonlite memoise R6]; }; + googleAuthR = derive2 { name="googleAuthR"; version="0.6.3"; sha256="035xdqkkf1lcklq3whwld1lnxz830p1kplia7jbb1ay656zknb8x"; depends=[assertthat digest httr jsonlite memoise R6]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.4.0"; sha256="1iwn0qjyxyg1xr1s492h7z2g5yzcfw8kasd4ghxmghnqvhzzf7vn"; depends=[assertthat curl googleAuthR httr jsonlite openssl yaml zip]; }; googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.2.0"; sha256="1kslsi7gc4na8pm8dyizswf9pfpdq1rprn08rd7kbxsisclbzc7y"; depends=[assertthat future googleAuthR httr jsonlite]; }; - googleLanguageR = derive2 { name="googleLanguageR"; version="0.1.1"; sha256="1r601s81dm18wb44r65ssx9kxdj849caykzpvwba1bk1xvpp4fni"; depends=[assertthat base64enc googleAuthR jsonlite magrittr purrr tibble]; }; - googlePolylines = derive2 { name="googlePolylines"; version="0.4.0"; sha256="041dmsi938y47287hdv30c99d8rxjwdc12d7s29shghh64h96y50"; depends=[BH Rcpp]; }; + googleLanguageR = derive2 { name="googleLanguageR"; version="0.2.0"; sha256="1l0gnynild95k9fw1d398zd4dkws97p13vvfv6jaklqj0xmh9ib8"; depends=[assertthat base64enc googleAuthR jsonlite magrittr purrr tibble]; }; + googlePolylines = derive2 { name="googlePolylines"; version="0.6.1"; sha256="1g28py8amkfq8cgf297w9yv1n26wm2alb6gmcal3i39qfadkdhsv"; depends=[BH Rcpp]; }; googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; googleVis = derive2 { name="googleVis"; version="0.6.2"; sha256="1idnp9ndgg2dwybdpw7q3pkaw9kw2vy2xkls9qykrpz1p6nf3mn1"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="0.1.1"; sha256="1fshv85s4ldw2kc7lbbdvrl260pz76z04awx1n6lg0f5xmba9rfg"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; - googlesheets = derive2 { name="googlesheets"; version="0.2.2"; sha256="18q0xmxn09b52rmky7gr5flp0awndcnsgb7zcvkzvkrkvmwad52b"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tidyr xml2]; }; - googleway = derive2 { name="googleway"; version="2.4.0"; sha256="176jmwnn6k8w6078jcq9b4pzix70sbs118g28jpi4in4sznr1dvg"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr Rcpp scales shiny viridisLite]; }; - goric = derive2 { name="goric"; version="0.0-95"; sha256="05sbsnjjlpy1z0mfbsrihrp2gp4d66cvprhgzxy76lipgm5mmvqi"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; + googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; }; + googleway = derive2 { name="googleway"; version="2.7.0"; sha256="129yyy21sdbhhffg23jkhs0d6f03di4da5mwgg8x8ckv7r9jraw8"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; + goric = derive2 { name="goric"; version="1.1-0"; sha256="1smjq9vljszgngs5i6x55jwg0imzc5gsfdqxzcs4541fp3pvk999"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; gower = derive2 { name="gower"; version="0.1.2"; sha256="1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"; depends=[]; }; gpDDE = derive2 { name="gpDDE"; version="0.8.2"; sha256="100g2f8zlpbwxb46h62pgvidll8aflz1zl4inyh8dml6vhm9pilp"; depends=[CollocInfer deSolve fda forecast lars limSolve MASS nnls penalized trustOptim TSA]; }; gpairs = derive2 { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode colorspace lattice MASS vcd]; }; gpclib = derive2 { name="gpclib"; version="1.5-5"; sha256="08j81b8wymsgin20n54gvm6m54rmdic51p6qzs9cz4pmgl7dkkjv"; depends=[]; }; gpg = derive2 { name="gpg"; version="0.5"; sha256="1l13wwmhayyhgl2m3r5f5p3m3y3z3pcj38liywx6a24hpxmir7pp"; depends=[curl]; }; - gphmm = derive2 { name="gphmm"; version="0.99.0"; sha256="0qn1z9pc8gzq63iwvjibaha525abjg45qp01nx3ggsrr4hm9xm69"; depends=[Biostrings docopt dplyr Rcpp stringi stringr]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; gplots = derive2 { name="gplots"; version="3.0.1"; sha256="02nb8n3s7c1zxq2s7ycaq2ys72y7mzirxrwj954h6gdc4x1zhg9l"; depends=[caTools gdata gtools KernSmooth]; }; gpmap = derive2 { name="gpmap"; version="0.1.1"; sha256="00jhslbxbp6dgq7bw346hfpw0gans048vsn7chyzjhyr7ah5xrfg"; depends=[foreach ggplot2 isotone plyr]; }; + gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gpr = derive2 { name="gpr"; version="1.1"; sha256="03ywik11kc6cnaqrzzzi94jkrdbd378m3sf26f2vpb7d834nl728"; depends=[]; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; gpuR = derive2 { name="gpuR"; version="2.0.0"; sha256="1aq9gmnl69yw7124nr8jaih7598gkknp7krmdsnx600i4k37yzjs"; depends=[assertive BH Rcpp RcppEigen RViennaCL]; }; gqlr = derive2 { name="gqlr"; version="0.0.1"; sha256="0qvyvy514ma5wi2qm6a8praqa7js9wl0hh0ack1hknw33g2gyqhy"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; - grImport = derive2 { name="grImport"; version="0.9-0"; sha256="1d8fd7502qj7cirjqdkr1qj51rylw2fz5hs06avfvc2dxs2xwfw1"; depends=[XML]; }; + grImport = derive2 { name="grImport"; version="0.9-1"; sha256="1qhyw5wiyfqw1wcpvcgdwc1vgaz7j7dbc7qa5h85qgml7hb68mjv"; depends=[XML]; }; grImport2 = derive2 { name="grImport2"; version="0.1-4"; sha256="1hwx287pp936f0wbcicplwmhz96ip00wq09dp7bvz80lqcmr8nyx"; depends=[base64enc jpeg png XML]; }; gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; @@ -7036,23 +7117,23 @@ in with self; { grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; }; graphTweets = derive2 { name="graphTweets"; version="0.4.0"; sha256="1zw04s61wjgrx6r6fspp59y5l3bfjf68klcrkp7alaap5dpjsn9a"; depends=[dplyr igraph magrittr purrr reshape2 rtweet splitstackshape]; }; grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; - graphframes = derive2 { name="graphframes"; version="0.1.0"; sha256="1h7dng6j2wizr14sl3f9lpvka56vd40rjs6skfdyxbn5s8ijmdd8"; depends=[sparklyr tibble]; }; - graphicalVAR = derive2 { name="graphicalVAR"; version="0.2.1"; sha256="1z4x32ji71rq1x89r3wmjhm1fq7klggpz6c1cf45fvcd9qs6ykhk"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; + graphframes = derive2 { name="graphframes"; version="0.1.1"; sha256="1qharg73aaw5xdvkngsxb9wzsgb4xc067cxm20d9yiz4qm7a9050"; depends=[sparklyr tibble]; }; + graphicalVAR = derive2 { name="graphicalVAR"; version="0.2.2"; sha256="1jzhqbdylpzc8d28vz2k34i9dpxx5x34bgvx73z8wjglnn6j27b8"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; }; - graphkernels = derive2 { name="graphkernels"; version="1.4"; sha256="1dwk1bd2nx9kdzxq31cgynd75r7am49ygkaryb6iqcmva1wc5xs0"; depends=[igraph Rcpp RcppEigen]; }; + graphkernels = derive2 { name="graphkernels"; version="1.6"; sha256="1gn3ihqz7m0rdvvc2fp7hsgq583wh5cnz7200a2ff89xc04zs3dc"; depends=[igraph Rcpp RcppEigen]; }; graphon = derive2 { name="graphon"; version="0.2.0"; sha256="0fdvi2nn7g39mc85jg3rgwyk2wjh2k60pd9lyivfbg3140k1yawh"; depends=[ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.4"; sha256="103vggx9273dg4fkrhik4p1vj8qh7gxavyh933qxhajpmhnfhksh"; depends=[jsonlite Rcpp]; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; }; graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; }; - grattan = derive2 { name="grattan"; version="1.5.3.7"; sha256="0lvmypw77za3nafq6mqasfhbhci59mq7cia9y988czs9fs9l3858"; depends=[assertthat data_table fastmatch forecast hutils magrittr Rcpp rsdmx zoo]; }; + grattan = derive2 { name="grattan"; version="1.6.0.0"; sha256="0w8dqnj8di3fm2vp1bz2wdyh207rh9vwqc25mhxg73jjmls8rd33"; depends=[assertthat data_table fastmatch forecast hutils ineq magrittr Rcpp rsdmx zoo]; }; gravity = derive2 { name="gravity"; version="0.6"; sha256="15ngk6a5f6xjvisk6ma625iaw4ybg7722xgmnr4rnlmsgm95v668"; depends=[censReg glm2 lmtest MASS multiwayvcov sandwich survival]; }; - grec = derive2 { name="grec"; version="1.1.1"; sha256="1qn1vbhlw42wqg9vj5plb12pg9xskn32z27ifyzm4kggp1vckgbf"; depends=[imagine raster]; }; + grec = derive2 { name="grec"; version="1.2.0"; sha256="1djmi5nm4xdxzyikll3wcgfabqr952qqlyxad8frvxy878a85fpw"; depends=[imagine raster]; }; greport = derive2 { name="greport"; version="0.7-1"; sha256="1h1g3khb30n3y8l1sxpas2s6s667az4yxvsq42x5dfx8fic42p6n"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; greta = derive2 { name="greta"; version="0.2.3"; sha256="10vli747b5a1m53qszxk91wppg9511la9yc823qrr51s92z8i222"; depends=[coda progress R6 reticulate tensorflow]; }; - grex = derive2 { name="grex"; version="1.7"; sha256="0bciyafqwx404axidz4dlj856mzy73ij5sifxhvbjnn07rx844c9"; depends=[]; }; - greybox = derive2 { name="greybox"; version="0.2.0"; sha256="0d0d1c5whh94n678p07fnwn2xaqgv54qp1k1rkis72dgs8jbzm2n"; depends=[forecast zoo]; }; + grex = derive2 { name="grex"; version="1.8"; sha256="0z81dlzk5vv51nwhfiijzpxgf71m4fsrfqzrbxx2kyf3f8c9xg1r"; depends=[]; }; + greybox = derive2 { name="greybox"; version="0.2.2"; sha256="1kgxcg9502gn766p4qvdbixi25gc81xg49wlzv02gcsqf2nzrl1c"; depends=[forecast lamW]; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; - grf = derive2 { name="grf"; version="0.9.6"; sha256="0gv1zphjgwqssiljyqhhv6ggnvw9nyg7wf7sasilpy59qpi457wv"; depends=[DiceKriging Matrix Rcpp RcppEigen sandwich]; }; + grf = derive2 { name="grf"; version="0.10.0"; sha256="1pfpgnnzqasai797kizmpv4sgr0i38amppmqwba22rs5mrz72c9w"; depends=[DiceKriging Matrix Rcpp RcppEigen sandwich]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridDebug = derive2 { name="gridDebug"; version="0.5-0"; sha256="12zrl7p8p7071w5viymdipycja7a2arvy0aahgahd5nlx1k1gha0"; depends=[graph gridGraphviz gridSVG]; }; gridExtra = derive2 { name="gridExtra"; version="2.3"; sha256="0fwfk3cdwxxim7nd55pn7m31bcaqj48y06j7an2k1v1pybk0rdl1"; depends=[gtable]; }; @@ -7062,12 +7143,14 @@ in with self; { gridsample = derive2 { name="gridsample"; version="0.2.0"; sha256="0hpfhkma60h59z3akjqs7igs6zg00xs3jlq3sm48gxbjrk7fb5sm"; depends=[data_table deldir geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; grnn = derive2 { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; }; - groc = derive2 { name="groc"; version="1.0.5"; sha256="1kqcdyq1y80gd62jpn38yz6q1qmg84b7k8qcniip5h948vfzkddg"; depends=[MASS mgcv pls robust robustbase rrcov]; }; - grofit = derive2 { name="grofit"; version="1.1.1-1"; sha256="1rnym5fxbg3bin2idmymrwvf1fcd646bipbgjd6wby8my69zy4c5"; depends=[]; }; + groc = derive2 { name="groc"; version="1.0.6"; sha256="0x7rrf5bw05s257xhzklpc6hslpjnzjx02hlrz4r9zixbfffmawc"; depends=[MASS mgcv pls robust robustbase rrcov]; }; gromovlab = derive2 { name="gromovlab"; version="0.7-6"; sha256="02s7x23610dbpmrqh7pimspa10v3fnmj48fwmh0a6igd74rmj2mg"; depends=[ape cluster glpkAPI igraph quadprog]; }; + groupICA = derive2 { name="groupICA"; version="0.1.1"; sha256="1wl828ligvvw55xic383gdn7aq4mbwsnkl4ym6f71jn5g3p36d0i"; depends=[MASS]; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; groupdata2 = derive2 { name="groupdata2"; version="1.0.0"; sha256="11j5p3afr5qc227ljdwwwp17jzaylqlhc7g0gr3jvgrhjnijs2a0"; depends=[dplyr numbers plyr]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; + groupedSurv = derive2 { name="groupedSurv"; version="1.0.3"; sha256="15ah8v1mfyq9xi27kkl0vwwbhf16vd4hy9h809jlw1i7b1zwg4pm"; depends=[BH doParallel doRNG foreach qvalue Rcpp RcppEigen]; }; + groupedstats = derive2 { name="groupedstats"; version="0.0.1"; sha256="19rdn86zzv40f0ha0q043wj538scbj1x2j80bwllcbl78cmpq3i3"; depends=[broom crayon dplyr glue magrittr purrr rlang robust rstudioapi sjstats skimr tibble tidyr]; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; growcurves = derive2 { name="growcurves"; version="0.2.4.1"; sha256="0h96c1hd6cdzc2l2a9dakmxn2hspvr0fpx9938iscm4hi9ds97m2"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -7076,16 +7159,16 @@ in with self; { growthcurver = derive2 { name="growthcurver"; version="0.2.1"; sha256="0q70g940ggpwnx2cpq2j8ambfbj9sqw6ivyp9cya1nbn05bah9ds"; depends=[caTools minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; - growthrates = derive2 { name="growthrates"; version="0.7.1"; sha256="0ci846jgshnvrvifl8snyax8ljs9n13lr42mzm89l0gpkg6lh2g0"; depends=[deSolve FME lattice]; }; + growthrates = derive2 { name="growthrates"; version="0.7.2"; sha256="1szyc85gi0wgg98br53lxqpamic1srvfiyq1m818j38xnlyj1lxw"; depends=[deSolve FME lattice]; }; grpSLOPE = derive2 { name="grpSLOPE"; version="0.2.1"; sha256="1r9irf83f7szhkdqis2rakil8fsr3rqsfrj4dmbg3r3rnr8wl8nh"; depends=[SLOPE]; }; grplasso = derive2 { name="grplasso"; version="0.4-5"; sha256="15bqckq9qjdlllhfpb21vzgi9msbl544alkrz01w1vvb3hk1847y"; depends=[]; }; - grpreg = derive2 { name="grpreg"; version="3.1-3"; sha256="0i5gxhjylva3aby933hydkdb8v842qfa4jgfs0pwim8xfr2ipjs7"; depends=[Matrix]; }; + grpreg = derive2 { name="grpreg"; version="3.1-4"; sha256="0lxr83imsg3g9nk2cmvmg6mying23f05f5q2xniiqvayrd7i4ii9"; depends=[Matrix]; }; grpregOverlap = derive2 { name="grpregOverlap"; version="2.2-0"; sha256="1kq8wxpx21irwckndgfkzdy5jgzf7pmcwpclmjzjxznv6cyaikd0"; depends=[grpreg Matrix]; }; grpss = derive2 { name="grpss"; version="3.0.1"; sha256="01bjjhv3vkvn5h363g5a9dlm7kzq10q7ixmrc0kkq5hsbs31vl3x"; depends=[doParallel foreach grpreg MASS]; }; grr = derive2 { name="grr"; version="0.9.5"; sha256="0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"; depends=[]; }; grt = derive2 { name="grt"; version="0.2.1"; sha256="1dw5rjs82r82l6qryyyq9cczm770v4iv60d7pi1nb4b0733ndbd5"; depends=[MASS]; }; gsDesign = derive2 { name="gsDesign"; version="3.0-1"; sha256="0cixg176ihbkwkcllabr2klc15cssdnfzwklf0q1wd23lmv6aj43"; depends=[ggplot2 plyr xtable]; }; - gsEasy = derive2 { name="gsEasy"; version="1.1"; sha256="1g68v51wpgb0fq4nb3q4b9hv34f12dlcp6115css7748imz9p99q"; depends=[ontologyIndex Rcpp]; }; + gsEasy = derive2 { name="gsEasy"; version="1.3"; sha256="00471kfjb6zw3n4nbx3a91xjn748hw3xpl9pq5sgbrf6xg9gcf7c"; depends=[ontologyIndex Rcpp]; }; gsalib = derive2 { name="gsalib"; version="2.1"; sha256="1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1"; depends=[]; }; gsarima = derive2 { name="gsarima"; version="0.1-4"; sha256="1ay3iamnvg7mbnl1xaxxcyic559bdnfspy883w2bwgy20yhr34yg"; depends=[MASS]; }; gsbDesign = derive2 { name="gsbDesign"; version="1.00"; sha256="1kbwlpxbr70aagx9jkap9xlw13r1k3y630b08wmmny421sv4zhxl"; depends=[gsDesign lattice]; }; @@ -7098,7 +7181,7 @@ in with self; { gsloid = derive2 { name="gsloid"; version="0.1.0"; sha256="1ma5si86ynfsis0pnw8hyv6xc4frbkhy5ks03mr0z16gasffkycg"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gsrsb = derive2 { name="gsrsb"; version="1.0.3"; sha256="1r4pc3zcmgwxbsmpwb6m24mmy0p78nq35bigjqvwcc32imyw4ls9"; depends=[ldbounds mvtnorm xtable]; }; - gss = derive2 { name="gss"; version="2.1-8"; sha256="1g44214kbgx4gafcz482iyy3izzv2cfp6v6yqfggp6lkvn6wwv0p"; depends=[]; }; + gss = derive2 { name="gss"; version="2.1-9"; sha256="1wscgj344szz8ry6p2kf1hgdgifzn5phs1z1p3kkzfykq5hzwq99"; depends=[]; }; gsscopu = derive2 { name="gsscopu"; version="0.9-3"; sha256="0bvhhs5wn4y1dcff2g87f80jdn3i4mdbvdbydsbx80ng38rfxhhg"; depends=[gss]; }; gstat = derive2 { name="gstat"; version="1.1-6"; sha256="0snvga824v1kbd3xp46652bv6drfrgkjsi5zrbdcliqpqz79wk9f"; depends=[FNN lattice sp spacetime zoo]; }; gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; @@ -7110,13 +7193,15 @@ in with self; { gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; - gtools = derive2 { name="gtools"; version="3.5.0"; sha256="1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6"; depends=[]; }; + gtools = derive2 { name="gtools"; version="3.8.1"; sha256="0f5syk1qq6cjq6hwymvkiyhzwa389z94722v881ipbfqkd2q8505"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.4.1"; sha256="08zfh73viv9p1c4qmw3jnywa5xzbm39kfi60whl0w5pvh3q9pksf"; depends=[anytime curl ggplot2 jsonlite]; }; + gtsf = derive2 { name="gtsf"; version="0.1.0"; sha256="11b1rgqzyywpk0qjm575l98irbifgkdlfhhynccils5y8f7vyhf8"; depends=[assertthat dplyr magrittr readr rlang sf stringr tibble]; }; gtx = derive2 { name="gtx"; version="0.0.8"; sha256="0x71jji2yldi9wpx8d3nldbjfj4930j7zcasayzbylf9094gmg26"; depends=[survival]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; gumbel = derive2 { name="gumbel"; version="1.10-1"; sha256="12rkri8bvgjn0ylf1i4k9vpb8mvbasidvx2479kmis2rc1p07qq7"; depends=[]; }; gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; + gustave = derive2 { name="gustave"; version="0.3.0"; sha256="1vijf5x07l507r0li6hs0hhxia83llpykllcrkhm00ms5na7p4jz"; depends=[MASS Matrix]; }; gutenbergr = derive2 { name="gutenbergr"; version="0.1.4"; sha256="1xf9h0ikfzgq6bzzxa7wih29cgbfk6lgdv041fprxbd9rz38agi9"; depends=[dplyr lazyeval purrr readr stringr urltools]; }; gvc = derive2 { name="gvc"; version="0.5.2"; sha256="0cfvli6ap5kw3agv94d7g7rhmlxd66yyngc7c9pl4fsxf7sm6nx4"; depends=[decompr diagonals]; }; gvcR = derive2 { name="gvcR"; version="0.1.0"; sha256="0r54924b9a65k11p8y3p7jxbvmpb7s7vs87v65hhl98gxacj5hk8"; depends=[dplyr eda4treeR lme4 magrittr]; }; @@ -7129,22 +7214,21 @@ in with self; { gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyriq = derive2 { name="gyriq"; version="1.0.2"; sha256="12vbnhianzi4l43czaxrbnbkz1h8lvmwjys0y3c2ml3g6dmwwfji"; depends=[CompQuadForm irlba mvtnorm survival]; }; - h2o = derive2 { name="h2o"; version="3.16.0.2"; sha256="181rm5y7wwmpzi45sy62blr6jk9wfbs3j14ansmh7ad1rbml3zm3"; depends=[jsonlite RCurl]; }; + h2o = derive2 { name="h2o"; version="3.20.0.2"; sha256="1pchml5d8py4cnii5lmmw65cglixvgwgvl592kl3ix09w34grsps"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.2.0"; sha256="06d2rrr27xvnsai6zjiaiw0jjfzdza1cc39c03d6pjkvnh0mqh2c"; depends=[magrittr reticulate]; }; h5 = derive2 { name="h5"; version="0.9.9"; sha256="14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx"; depends=[Rcpp]; }; hBayesDM = derive2 { name="hBayesDM"; version="0.5.0"; sha256="174z98jvi04df04lpdxh3j8lmjvgrg287nxfnrcvjkibc0jiss4m"; depends=[ggplot2 loo Rcpp rstan rstantools]; }; hIRT = derive2 { name="hIRT"; version="0.1.2"; sha256="0pqp6bycr13di1hbi5sqnkiannz2hyg0ysshswv2i9fp0vkhdhqf"; depends=[pryr rms]; }; - hNMF = derive2 { name="hNMF"; version="0.5"; sha256="1nm9sy921fjzqc60p0mf6k0j5a56bdrd8hnghnpaqzs244mm08bj"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; + hNMF = derive2 { name="hNMF"; version="0.6"; sha256="0a6wf9mhv3b7wb8kimjqm1sj9k8d2j98p7i707bgn5hvmyc39bnf"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; hR = derive2 { name="hR"; version="0.1.3"; sha256="0s7c2aiq58c2zmv25m42cxp5chzkp5grz5bjqrknfkwjy21679h1"; depends=[data_tree reshape2]; }; hSDM = derive2 { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; hail = derive2 { name="hail"; version="0.1.1"; sha256="1nrc9msqyy5iq2i6p8875anbqswxl2z6vdd4hvihnl22qh5fnbvh"; depends=[]; }; - hamlet = derive2 { name="hamlet"; version="0.9.5-2"; sha256="1fj7bqn6g127kan4l1pnv0qvzsgxqiixjaf3yn0g3cwawyzqixmv"; depends=[]; }; + hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; hansard = derive2 { name="hansard"; version="0.6.0"; sha256="13h68b300c4lkqbl5gw4hkqcbb2ikvan4hx8092ds995514rg4x8"; depends=[dplyr httr jsonlite lubridate stringi tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; - haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.1"; sha256="0cs90zxxbvglz1af0lh37dw1gxa04k0kawzxamz2was3dbh19lbz"; depends=[haplo_stats survival]; }; haplo_stats = derive2 { name="haplo.stats"; version="1.7.9"; sha256="19kxascqq5qz0zdxx0w837ji207y1z2ggxkl4vmlbay03k2dw2mx"; depends=[rms]; }; - haploR = derive2 { name="haploR"; version="1.6.2"; sha256="0xzh18170gxxd91yjvh2j3a8jkkz8hyf5rbvh4c9vfi5zirbi82z"; depends=[httr plyr RUnit tibble XML]; }; + haploR = derive2 { name="haploR"; version="2.0.3"; sha256="0m2pqrg1734x2ab19dqf5mqgrzibd2l5g6800if0a92bi51q67bx"; depends=[DT httr plyr RUnit tibble XML]; }; haploReconstruct = derive2 { name="haploReconstruct"; version="0.1.2"; sha256="17zdl9c3yy6jdzv1wp0ailbga456pmmybzxh3dldymhj8qf32cx0"; depends=[data_table dbscan foreach gplots igraph matrixStats stringi zoo]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.0"; sha256="0pwihfi6g4jrnkha9s9rksq0fc8j04mlrwf0295rmy49y19rg84s"; depends=[network]; }; @@ -7159,8 +7243,9 @@ in with self; { hashmap = derive2 { name="hashmap"; version="0.2.2"; sha256="1qypmyi033rjxjk055rv94qfqa99gm5hj5gfd9fiiq1xln3z700j"; depends=[BH Rcpp]; }; hashr = derive2 { name="hashr"; version="0.1.0"; sha256="1ri2zz2l1rrc1qmpqamzw21d9y06c7yb3wr60izw81l8z4mmyc3a"; depends=[]; }; hasseDiagram = derive2 { name="hasseDiagram"; version="0.1.3"; sha256="1r9z6jc9lbdj2xc81gpnbswrl8rhs8zrlsnypfrny40g3j402iap"; depends=[graph Rgraphviz]; }; - haven = derive2 { name="haven"; version="1.1.1"; sha256="1fkcvsrnw8waqwggv0aydbvbi99x5kp9g78xfxj4w6s3xvdzcysz"; depends=[forcats hms Rcpp readr tibble]; }; + haven = derive2 { name="haven"; version="1.1.2"; sha256="0pp8xjf5lzqg1wr8cwxj4njx99vxwlflwjrd7jvyzwlfpwh7n1qa"; depends=[forcats hms Rcpp readr tibble]; }; hawkes = derive2 { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp RcppArmadillo]; }; + hazer = derive2 { name="hazer"; version="1.0.1"; sha256="1k108i65rwkbq4nz9b5rqi7a9cclbvjf1afzxb1kk6jx28kzkawg"; depends=[]; }; hazus = derive2 { name="hazus"; version="0.1"; sha256="1c0ahjdy9di1683nk5k4rmr6rhb66523ny039nyv842rgqdy625j"; depends=[reshape2]; }; hbdct = derive2 { name="hbdct"; version="1.0.1"; sha256="1lmbhl757hdswfq3skwbwsgxpfgim8475d9hk511dbwrzcm6wsxr"; depends=[]; }; hbim = derive2 { name="hbim"; version="1.0.3"; sha256="1480nydsi2xj7zbfk4zw24mhsjadf83d827kpqzbmn0yh6srp3ps"; depends=[mvtnorm]; }; @@ -7171,43 +7256,44 @@ in with self; { hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; - hddplot = derive2 { name="hddplot"; version="0.57-5"; sha256="01ljwb4glignq78gpm3n8ap8ws1ss7ibdy7ybdvhnm5zj6nnvjpp"; depends=[MASS multtest]; }; - hdeco = derive2 { name="hdeco"; version="0.4.1"; sha256="04nggwckvn1kwi238qd33l4pryzn4aq5bmi30bvfi99gwnrlgfgq"; depends=[]; }; + hdbinseg = derive2 { name="hdbinseg"; version="1.0.1"; sha256="0fy9cqrygsnxkb3nxg56md19svrvkbijpxkqfk9p18cj5ibwrq94"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; + hddplot = derive2 { name="hddplot"; version="0.59"; sha256="18llkpawm12cjxlcrlra60m16virfpjqiaqkvy9mb3wq1zif61rh"; depends=[MASS multtest]; }; hdf5r = derive2 { name="hdf5r"; version="1.0.0"; sha256="1s6p4cj909kc635fh5xpl87bqlcdj3dn3r1wk5g40abimk2b0pva"; depends=[bit64 R6]; }; hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; }; hdm = derive2 { name="hdm"; version="0.2.3"; sha256="0nj7pbkygzbiraw1b3pqv3bnkjhi1a0h48q0zgkcq8y79kj2f8cl"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; - hdme = derive2 { name="hdme"; version="0.1.1"; sha256="0p8qldiiqbd2vyxyrgz0dsh7n2dw5vbvqfqy6z5vkjl52wdggp7z"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk]; }; - hdnom = derive2 { name="hdnom"; version="4.9"; sha256="11yzjfp6b4apn0nyqmi0qm5rd8xy49w6hwwiq7p566mxqy32i2j2"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; + hdme = derive2 { name="hdme"; version="0.2.0"; sha256="03fmn7yxgx56329923pzqkjfrdg0aw2i7jj1sdf0cphzmi7m426n"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack]; }; + hdnom = derive2 { name="hdnom"; version="5.0"; sha256="0g7l5km18j11qfw8iq9ybl8lzdq6fk2g7cjc2yjsm3ava60n4xqh"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; hdpca = derive2 { name="hdpca"; version="1.0.0"; sha256="1sv7caw4nhpcvsb7fxpvf2b5zskvfsv004hrqc51b5jx4fsc7y92"; depends=[boot lpSolve]; }; hdrcde = derive2 { name="hdrcde"; version="3.2"; sha256="1901mg2k2ch9fzn1n9k0kmxkgd1m4pxvrda7mv0mp64nf4mx43xw"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; - healthcareai = derive2 { name="healthcareai"; version="1.2.4"; sha256="0ksanvwfdz8xdfqdkjb4i65q7x9jdrjl4z4qwsff16zfg6sj7q2c"; depends=[caret data_table DBI doParallel dplyr e1071 ggplot2 grpreg lme4 odbc pROC R6 ranger ROCR RSQLite xgboost]; }; + healthcareai = derive2 { name="healthcareai"; version="2.1.0"; sha256="1bzlgdf3gfgayw0axiwhbm9x2rqfyibkwymw2mm28fdz65r4n73i"; depends=[broom caret cowplot data_table dbplyr dplyr e1071 ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang stringr tibble tidyr xgboost]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; heatmap_plus = derive2 { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; }; heatmap3 = derive2 { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; }; heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; - heatmaply = derive2 { name="heatmaply"; version="0.14.1"; sha256="03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; + heatmaply = derive2 { name="heatmaply"; version="0.15.0"; sha256="0314nmlfwvgb9xmfvnw15l4is59dq1yq8i9461bykhj26jppyib2"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; + heatwaveR = derive2 { name="heatwaveR"; version="0.3.0"; sha256="1pfbhjnky0403hwjy29ady4q41vsgk3m3mwdki5ybkp9hx0c3zm3"; depends=[data_table dplyr ggplot2 lubridate Rcpp RcppArmadillo RcppRoll tibble zoo]; }; heavy = derive2 { name="heavy"; version="0.38.19"; sha256="15bg2qqkslkqfnsq3ixbgmq72xagh8laji0265l06xgf2l6045kx"; depends=[]; }; heemod = derive2 { name="heemod"; version="0.9.2"; sha256="0qln5c4m11vxpsa0l07qrzs006b05hsl342pc5dgz0hwdpn5dd9j"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr tibble]; }; hei = derive2 { name="hei"; version="0.1.0"; sha256="1cvwdkm5c9p3cfgpgdj0r7222mzz1jghq2i5f20xh3786gx05sqd"; depends=[nhanesA]; }; heims = derive2 { name="heims"; version="0.4.0"; sha256="0vnq31jwn09grni4gdhf1hzd87b62as4f65b2qw7ky6mi38ahr5d"; depends=[bit64 data_table fastmatch hutils lubridate magrittr]; }; - helixvis = derive2 { name="helixvis"; version="0.2.0"; sha256="02ypsh6qjbdcnvj4bh71ghc9igsp50sj2dvc0qvk6nlbdg7cfhlz"; depends=[rJava]; }; + helixvis = derive2 { name="helixvis"; version="0.9.1"; sha256="1xc55wyky3gnbs4gkmn1v74vgj4azriwlyd4psmc644w0rnajfjc"; depends=[plotrix]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; }; heplots = derive2 { name="heplots"; version="1.3-5"; sha256="1vyhfkp66gi17jni3gsbv9kn1s0n00qigr13q8xbzbgylz5jjiln"; depends=[car MASS]; }; here = derive2 { name="here"; version="0.1"; sha256="1vb5dxqdpimy51q1gjsypyq14p2hhvj7wsvh6g35pj1g03cyg9av"; depends=[rprojroot]; }; - hergm = derive2 { name="hergm"; version="3.2-0"; sha256="0yy684vjlk06r0bsx7clpjaj05q0pmbj006kbh9q6rysh35nf9p3"; depends=[ergm latentnet mcgibbsit network sna]; }; + hergm = derive2 { name="hergm"; version="3.2-1"; sha256="0r59qkbcqvsw7pcpas636crrj710j61swjknyr5vm22da90wzj1v"; depends=[ergm latentnet mcgibbsit network sna]; }; heritability = derive2 { name="heritability"; version="1.2"; sha256="18snrfsjj5jw5qicj92d5qch9v4ciqw1hbiwg6q8kfjka9nmqpma"; depends=[MASS]; }; - hermite = derive2 { name="hermite"; version="1.1.1"; sha256="0ns8l1rf346qxalfdwc7ny0kjp212f6qnnlgillpyvd8k29kg8iy"; depends=[maxLik]; }; + hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; hesim = derive2 { name="hesim"; version="0.1.0"; sha256="002phncl1glv3c3gwp9ifpk56j06rka26a3774xlj3zcs6izglns"; depends=[data_table Rcpp RcppArmadillo]; }; het_test = derive2 { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; }; hetGP = derive2 { name="hetGP"; version="1.0.2"; sha256="0dffkn11pm1x5jafc7yzy0jh4c2qqipfzhw205qiqxk5gny185k8"; depends=[DiceDesign MASS Rcpp]; }; hetmeta = derive2 { name="hetmeta"; version="0.1.0"; sha256="023bdjsv0ibisz47vaap9yamzjna4hhndk3haw2g1cm92wnrdra5"; depends=[metafor]; }; - hett = derive2 { name="hett"; version="0.3-1"; sha256="1y0hr9g2pjwzc5azh095h33qidxhhmlvd1csamjnhwdphj5drzz0"; depends=[lattice MASS]; }; + hett = derive2 { name="hett"; version="0.3-2"; sha256="1kmspw0738pdall5scmllsa79dynliai2glk1h5rzm4030r5rd6j"; depends=[lattice MASS]; }; heuristica = derive2 { name="heuristica"; version="1.0.1"; sha256="1myivlqw6a8wh97ma9lrpgvaqb0vn4kj8yp9r4z5vc4pxgmm48g6"; depends=[Hmisc]; }; - hexSticker = derive2 { name="hexSticker"; version="0.4.3"; sha256="0f3zm6z0gsq2ps5zv0z4d8z6v5ncgpamnpl8a9l022klqifkg6x1"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; + hexSticker = derive2 { name="hexSticker"; version="0.4.4"; sha256="0djrf0kgjndvvqc6bd6agbfwd790axv2jycd38in9lsn8fzhxnb7"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; hexView = derive2 { name="hexView"; version="0.3-3"; sha256="0cx5hl70sk1wk24na21vjyv50b2358z1plvvcw604qf1zij4icwn"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.27.2"; sha256="0lpfl0015lg5x7lvv9dr302bca22c7fs91pnd896ypgpzqg7pm26"; depends=[lattice]; }; hextri = derive2 { name="hextri"; version="0.6"; sha256="05rvigi225npncbr1brc6apc7gsg9a5jzcbmhvflwp3hbcg3hn02"; depends=[FNN hexbin]; }; @@ -7238,63 +7324,63 @@ in with self; { highlight = derive2 { name="highlight"; version="0.4.7.2"; sha256="0xc1akglgby3qd6c9y2rhcd0gpfihx5jvakji38vzlxb1m21sn10"; depends=[]; }; highlightHTML = derive2 { name="highlightHTML"; version="0.2.1"; sha256="06k2idx9aadjd6xp6kadm9jh7ap1hwg7vh0bc8vw9ll82wcp1nv1"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; - highr = derive2 { name="highr"; version="0.6"; sha256="0n9v44dxdy5fhkdmpbpa2p78whyd9z3rhhy42ipdz5m5vsr55qa3"; depends=[]; }; + highr = derive2 { name="highr"; version="0.7"; sha256="1dzknqk4x7iiiq1jkh9bqm5qcvs7mbqxbkn5955050payavabfya"; depends=[]; }; highriskzone = derive2 { name="highriskzone"; version="1.4-2"; sha256="1q9y34nj73kg5y6qy4kb023vyzbdb0f6x23asq20bj5pmz2l25y1"; depends=[deldir fields ks Matrix mvtnorm rgeos spatstat]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; }; hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; hisse = derive2 { name="hisse"; version="1.8.5"; sha256="1lhxj0cz3sdidpafll64fg1797y0472yxcr21dp2b83qbygkwfgl"; depends=[ape data_table deSolve GenSA nloptr phytools subplex]; }; - histmdl = derive2 { name="histmdl"; version="0.6-1"; sha256="0vgfy49hrjcm3f8l2hb0fbn1ydh94g4xq2s116yf2c9pd0pwsbi1"; depends=[]; }; + histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-24"; sha256="1jihw92zi5a4dj6lzm1qvkynv9fp6j5iy83g8rzikp276x63nb62"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; - histry = derive2 { name="histry"; version="0.1.2"; sha256="1m9zpqwzq7sqv4wpj2xxf0ndvz3cqk3bi8xq9n75z6b8q2lr74j8"; depends=[evaluate fastdigest]; }; + histry = derive2 { name="histry"; version="0.2.2"; sha256="0l8rf0l8rq28z1afrkywf4j9q2i2i3x1njs3h42f6b7jc0rnj8vm"; depends=[CodeDepends evaluate fastdigest roprov]; }; hit = derive2 { name="hit"; version="0.4.0"; sha256="1vyla7jlg61rlrmqjb1wya404xj90xys175h12qy30paxsl5icqz"; depends=[glmnet Rcpp speedglm]; }; - hitandrun = derive2 { name="hitandrun"; version="0.5-3"; sha256="0cmn8rzgksnygqwa5pngbdc6pds3kxx4y7mq3mg3xk1vys9b6r4n"; depends=[rcdd]; }; + hitandrun = derive2 { name="hitandrun"; version="0.5-4"; sha256="1cw6ya690ls7i07zbdjr27vlhww2d3c3ws3z7m20bfmwxb1pm3vz"; depends=[rcdd]; }; hive = derive2 { name="hive"; version="0.2-0"; sha256="0ywakjphy67c4hwbh6prs4pgq5ifd8x8inxjkigjiqz6jx3z852v"; depends=[rJava XML]; }; hkclustering = derive2 { name="hkclustering"; version="1.0.1"; sha256="19syq06y5dl0mcwyaxr7w1hj8ffp5s140j72djcz0lljhskzmp6f"; depends=[cluster]; }; hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; hmeasure = derive2 { name="hmeasure"; version="1.0"; sha256="0wr0xq956glmhvy4yis3qq7cfqv9x82ci9fzx3wjvaykd16h0sx9"; depends=[]; }; - hmi = derive2 { name="hmi"; version="0.9.10"; sha256="1swbzxykf4mwgahadi5l1xy06h4ivpc4gq3izshg6fvgrapbg1r5"; depends=[boot coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm tmvtnorm VGAM]; }; + hmi = derive2 { name="hmi"; version="0.9.13"; sha256="0rxxrx5ckjzj2wqdx05mihj86v0npj99q2n7zz9d44wncvnzz9g9"; depends=[boot coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm tmvtnorm VGAM]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="0.2-4"; sha256="096flx2b9s66dasqj05zrkxsmg3lj6j5w0pwrw3b1qkpp9dvlrkb"; depends=[]; }; hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; hms = derive2 { name="hms"; version="0.4.2"; sha256="1g6hslk3z0xga38r71irxq802wskg6nv804mp8y9f7i2wfrj0y55"; depends=[pkgconfig rlang]; }; - hnp = derive2 { name="hnp"; version="1.2-4"; sha256="14w2n95pgi5h71fag4ndrc82z7q26za99vj5z99rv19l5jkvmd46"; depends=[MASS]; }; + hnp = derive2 { name="hnp"; version="1.2-6"; sha256="12cbc353ipr2rcc93skf1766g38j1pvpdkqk3cswv0cxsjl2x7pl"; depends=[MASS]; }; hoa = derive2 { name="hoa"; version="2.1.4"; sha256="15klcpmja4afwmpfxrxgrfis0vj7fil8k15jc3p0lqz3dhvq0dvf"; depends=[statmod survival]; }; hoardeR = derive2 { name="hoardeR"; version="0.9.2"; sha256="0sss3ki2w0aqyp084pprycw8d8vgm60z41iq6g9nxhqhr9xy5kdw"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools httr IRanges MASS R_utils RCurl Rsamtools seqinr stringr XML]; }; hoardr = derive2 { name="hoardr"; version="0.2.0"; sha256="13bjycnr1v524c5wxigdd3kn8bx1sgwdqb10hbmbyjxffabacafr"; depends=[digest R6 rappdirs]; }; hogsvdR = derive2 { name="hogsvdR"; version="0.1"; sha256="0ji4j9fzwnacdqbzrj5zphak5nsin7vcja15w48fik8hv5w6qs46"; depends=[MASS Rcpp RcppArmadillo]; }; holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; - homals = derive2 { name="homals"; version="1.0-6"; sha256="1xfpb6mxfk18ad2fggljr2g01gy4c290axc3vgwngmmimmcvh4cy"; depends=[ape rgl scatterplot3d]; }; + homals = derive2 { name="homals"; version="1.0-8"; sha256="0gad0jmflw5zmzf9hk5qqmxxpbncm9gngsi24i3rgiz7565kli1r"; depends=[ape rgl scatterplot3d]; }; homeR = derive2 { name="homeR"; version="0.3.0"; sha256="0gi383392rs7snb2l9760vkws5hqfikyaj3i7cyby9g1sc2s6yx8"; depends=[]; }; hommel = derive2 { name="hommel"; version="1.1"; sha256="1vrfw3zxj6hlfr5czrhmx67bjbd94whfgdmsdzlmdpmj0w5r0naz"; depends=[Rcpp]; }; homologene = derive2 { name="homologene"; version="1.1.68"; sha256="0i2ywr3rxryakp7qskgjc0pll9nskwngk5m2d2jikxxq2biqf5zj"; depends=[dplyr magrittr]; }; homomorpheR = derive2 { name="homomorpheR"; version="0.2-1"; sha256="0qs4yimyfqx6rpxgh6h4z7vyb3qdxljnyvw1g8pxm4y75i0v6vz5"; depends=[gmp R6 sodium]; }; homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; }; hopbyhop = derive2 { name="hopbyhop"; version="2.1"; sha256="0j4m1zz0ijf1kw2m12g7bww3418b8pyjvvrzkm8xcryjil2xfmim"; depends=[]; }; - horizon = derive2 { name="horizon"; version="1.0"; sha256="1wrp5qr1qql21xwcjh415q67z2ym4790zfp0n81360v6bp2b3hyy"; depends=[raster]; }; + horizon = derive2 { name="horizon"; version="1.2"; sha256="0b8m9ghfabjgdl155wh4gc4ng2lsvyfyhsy62pldbcix757b4ck9"; depends=[raster]; }; hornpa = derive2 { name="hornpa"; version="1.0"; sha256="0pfvk2jkrwgvshgq9g55qijgpjh0677rpbya0r8759n92v3axbp4"; depends=[]; }; horserule = derive2 { name="horserule"; version="1.0.0"; sha256="0d348pn0ld7lr9lfl1z05905l9kl296j0xic1pib6r5l1c5600r9"; depends=[gbm ggplot2 inTrees MASS mvnfast randomForest RColorBrewer Rdpack]; }; horseshoe = derive2 { name="horseshoe"; version="0.1.0"; sha256="19khsr7gfcygqasjswvm0v0ddna1i1grfbhars8jlvybfawswhgx"; depends=[]; }; hot_deck = derive2 { name="hot.deck"; version="1.1"; sha256="13pfgcyqaf5ik3pi8vgm06xmqli4hgslzlmhy1zi951anzdr49bd"; depends=[mice]; }; hotspot = derive2 { name="hotspot"; version="1.0"; sha256="0a4w5d6rg324hd06lfwr1hxf6bwr10n55s3ynz5bpkh9c61yik3n"; depends=[]; }; - hotspots = derive2 { name="hotspots"; version="1.0.2"; sha256="1cwcwin86y7afjhs8jwlz1m63hh70dcjag0msds4ngksvjh9gj2q"; depends=[ineq lattice]; }; + hotspots = derive2 { name="hotspots"; version="1.0.3"; sha256="12v88k3yz1bsxx9p5dx8y54ccqcglwknm2jr7ybygdj2yasjr5l0"; depends=[ineq lattice]; }; housingData = derive2 { name="housingData"; version="0.3.0"; sha256="0ngfx2vjx705xixzpz0rgx1481cr2szj4yfi5g7ma1hhivddl7d1"; depends=[]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; hpcwld = derive2 { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; }; hpoPlot = derive2 { name="hpoPlot"; version="2.4"; sha256="176bf93gjwbi2z7nz81w4aycwax6f7jxvs3236zrmf0f0f4m7bkc"; depends=[functional magrittr Rgraphviz]; }; hqmisc = derive2 { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; hqreg = derive2 { name="hqreg"; version="1.4"; sha256="1j6zp3rmpjx409vm7kq159mlawg87wsq0ypdkan34yxxv9py2jmi"; depends=[]; }; - hrbrthemes = derive2 { name="hrbrthemes"; version="0.1.0"; sha256="1hf4370hj80m6zr20236p9068g6ky0366gfk5l9hnj6l8jpmy9qa"; depends=[extrafont ggplot2 hunspell purrr scales stringi]; }; - hsdar = derive2 { name="hsdar"; version="0.7.0"; sha256="09yx8zc9qbf2kj8k76z9a6rhh5zy4ggsxvwhx35666phdml42dy0"; depends=[caret raster rgdal signal]; }; + hrbrthemes = derive2 { name="hrbrthemes"; version="0.5.0"; sha256="0bayblwwf4fwjc21c7zhdipvfxycfil4xkja0dirvvhk5zwszgnx"; depends=[extrafont ggplot2 htmltools knitr magrittr rmarkdown scales]; }; + hsdar = derive2 { name="hsdar"; version="0.7.1"; sha256="1bjcgkqhjcrysyh0l1w3r1zzmv3sdlb7xzxdc504z1viy1ayh6ly"; depends=[caret raster rgdal signal]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; hsphase = derive2 { name="hsphase"; version="2.0.1"; sha256="1z7yxbknldxn780dxw9xz984b3i8pj5hmdnbynvxc5k0ss8g7isy"; depends=[Rcpp RcppArmadillo snowfall]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; htm2txt = derive2 { name="htm2txt"; version="2.1.1"; sha256="09q026yy8qm1fb3a4bf9vsp4j09kayl7xmk0p58ikar5l3bmfdjv"; depends=[]; }; - htmlTable = derive2 { name="htmlTable"; version="1.11.2"; sha256="1lbpi0kkk8b41w10scmlf27dg5azcv51a4q3p5bpqyphrnqp78k4"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; + htmlTable = derive2 { name="htmlTable"; version="1.12"; sha256="1n5136vb7mi4rxl5jgwdmdhn4mwv2pcqyw2mrj406ih4hy6hpxa2"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; htmltab = derive2 { name="htmltab"; version="0.7.1"; sha256="0lymagm7z6zn0ddygqxi831ikk74112lkqkbvs5j1djhmr359ajc"; depends=[httr XML]; }; htmltidy = derive2 { name="htmltidy"; version="0.4.0"; sha256="090rj1fzdsa8m4g33d4mx92dm8afh173i4hqa4zym8c909jwh9qn"; depends=[htmltools htmlwidgets Rcpp XML xml2]; }; htmltools = derive2 { name="htmltools"; version="0.3.6"; sha256="18k8r1s8sz1jy7dkz35n69wj20xhmllr53xmwb4pdzf2z61gpbs4"; depends=[digest Rcpp]; }; @@ -7306,8 +7392,8 @@ in with self; { httpcache = derive2 { name="httpcache"; version="1.1.0"; sha256="11hdc1jj2jbgvsps1h55azq0cr2fl556k631ns9k0747sjfmy2k9"; depends=[digest httr]; }; httpcode = derive2 { name="httpcode"; version="0.2.0"; sha256="06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"; depends=[]; }; httping = derive2 { name="httping"; version="0.2.0"; sha256="0hdcf51yak8yagy4xj9cyck934lgmvpkd08jvlql33ir5mqvvv3i"; depends=[httpcode httr jsonlite magrittr pryr]; }; - httptest = derive2 { name="httptest"; version="3.0.0"; sha256="1k75i84ajka0abc8x51w74dldb0z9i08dlqbkcdby25465k01l8r"; depends=[digest httr jsonlite testthat]; }; - httpuv = derive2 { name="httpuv"; version="1.4.0"; sha256="076blaj0vzwfgx212lvgscczmiy9n13izdshrm6xb9vpcmklm95m"; depends=[BH later promises Rcpp]; }; + httptest = derive2 { name="httptest"; version="3.1.0"; sha256="1r0grzlblyri526a3pp2n8v9zf23kf41i6kl64qmkrq1bamr0m17"; depends=[digest httr jsonlite testthat]; }; + httpuv = derive2 { name="httpuv"; version="1.4.4.2"; sha256="03lc8j98c6fx9g431is0q5zm4y4phjg99h7w6y6c38cjg7kphr72"; depends=[BH later promises Rcpp]; }; httr = derive2 { name="httr"; version="1.3.1"; sha256="0n7jz2digbgv48rbr9vmzv4vmf4rahl9jjy31izs7sxj4rs4s4r2"; depends=[curl jsonlite mime openssl R6]; }; hues = derive2 { name="hues"; version="0.1"; sha256="0b6y4ld242fqzx4ccxzk4i4zbx7myk7v3a03r0klgbh2mmw3ixm0"; depends=[colorspace]; }; huge = derive2 { name="huge"; version="1.2.7"; sha256="134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4"; depends=[igraph lattice MASS Matrix]; }; @@ -7315,21 +7401,21 @@ in with self; { humaniformat = derive2 { name="humaniformat"; version="0.6.0"; sha256="0vaynjzz57pk4y1liag9lpn9jkag2033a6bkn28zzm7ndg3344l6"; depends=[Rcpp]; }; humanize = derive2 { name="humanize"; version="0.2.0"; sha256="0hhhd640n77s8xaa2gbd9fckdk2yjg68gdb7wjy56a2khzqfssxr"; depends=[assertthat glue lubridate]; }; humanleague = derive2 { name="humanleague"; version="2.0.2"; sha256="1svsqfqisywf0iqf3mrh4xnssvjmml6wn7l8iq5shvpmw71l4nnl"; depends=[curl Rcpp]; }; - humidity = derive2 { name="humidity"; version="0.1.1"; sha256="0ifxjz7216ld5c4kc9vs83fcijbg5i2z0mwfzszch9j1s734yc8y"; depends=[]; }; + humidity = derive2 { name="humidity"; version="0.1.4"; sha256="1nnrjk9wjvp28s615xd9wllnwv4js3kg7rj2f6al3sk3vhiqljsk"; depends=[]; }; hunspell = derive2 { name="hunspell"; version="2.9"; sha256="10186544s6nyd2ba470idxrxsl788dkmr1g1ri8x2n1lky9zmrik"; depends=[digest Rcpp]; }; hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; }; hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; }; - hutils = derive2 { name="hutils"; version="1.0.0"; sha256="0s30wiyn8j37hi4lzs1w1lcvg8dskmbi4z396wpq3ixjvna0cfxv"; depends=[data_table fastmatch magrittr]; }; - huxtable = derive2 { name="huxtable"; version="3.0.0"; sha256="0vb596x9c6hhnrdpqvj0x8fawaizn9yhqp8b6i13n93synyv93gy"; depends=[assertthat dplyr glue htmltools knitr lazyeval rmarkdown stringr tibble tidyselect]; }; + hutils = derive2 { name="hutils"; version="1.1.0"; sha256="05vywa9lgnpvrkly5mbc4wlxc5v7cz58zgm6wynbxpc58m6smi73"; depends=[data_table fastmatch magrittr]; }; + huxtable = derive2 { name="huxtable"; version="4.0.1"; sha256="1z93py9nnfpvqkackgxvr2pnd642zcvqks9x01m4nh6dsbh52bs7"; depends=[assertthat dplyr glue htmltools knitr rmarkdown stringr tibble tidyselect]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; hwwntest = derive2 { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; hybridHclust = derive2 { name="hybridHclust"; version="1.0-5"; sha256="0w06vna66hlmvx10dl1l0nzbnxkd634gxjz26w015f83vpmfc5vz"; depends=[cluster]; }; - hybridModels = derive2 { name="hybridModels"; version="0.2.15"; sha256="1qq466cjs1q2rz76npc6cs4rknfc6aal9q64548iv223fq16zq8z"; depends=[doParallel foreach ggplot2 GillespieSSA reshape2 stringr]; }; + hybridModels = derive2 { name="hybridModels"; version="0.3.5"; sha256="0bg065j3y3xwxlib9i78pa0ghlblyp4qq1kmh3j02w8xi00rnrs6"; depends=[doParallel foreach ggplot2 GillespieSSA reshape2 stringr]; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; }; hydroGOF = derive2 { name="hydroGOF"; version="0.3-10"; sha256="010f2i53rl4fjl65fg5wzaci0kc5khpak5v1zz9yxsj77fmrmvfy"; depends=[hydroTSM xts zoo]; }; - hydroPSO = derive2 { name="hydroPSO"; version="0.3-4"; sha256="12md94g78m7m1np36sadx0wxpb149pn5gd8yj2kw7fphb8g6a218"; depends=[Hmisc lattice lhs sp zoo]; }; + hydroPSO = derive2 { name="hydroPSO"; version="0.4-1"; sha256="0ic43rpcr9n7fjyvw7n57pm9lhqk09pi7lg2nvngj2fg4y8288jb"; depends=[Hmisc hydroGOF hydroTSM lattice lhs scatterplot3d sp vioplot zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.5-1"; sha256="053id9ldr10mafww3vas9fiy16lz0n1mqqfg6wjsbm5r15jkz3ha"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; hydrolinks = derive2 { name="hydrolinks"; version="0.10.0"; sha256="0004a03bx9l9wq6zdz5az41rjxv1ka4qmnxk6ksy8i7365wsay88"; depends=[dbplyr dplyr httr rappdirs RSQLite sf units]; }; @@ -7338,14 +7424,15 @@ in with self; { hyfo = derive2 { name="hyfo"; version="1.3.9"; sha256="03f3irmhndwfnv4i121gwxb2yv1868pggzyr80pgp4969qzddacm"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; hyper_fit = derive2 { name="hyper.fit"; version="1.0.3"; sha256="17f5i2i960796hl92y7ci9ffspway435r02kw1zk91lvfn927hng"; depends=[LaplacesDemon magicaxis MASS rgl]; }; hyper2 = derive2 { name="hyper2"; version="1.0-1"; sha256="107cp6na0srqax42fmvcsrviy631hg6phqmkc0cxz1zdxxxw6442"; depends=[partitions Rcpp]; }; - hyperSpec = derive2 { name="hyperSpec"; version="0.99-20171005"; sha256="0rhn9f4faxscwrip14ndymaddc5nfd6pyrhgwkwm8hf680wdrhbl"; depends=[ggplot2 lattice latticeExtra testthat]; }; + hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; }; + hyperSpec = derive2 { name="hyperSpec"; version="0.99-20180627"; sha256="12bgp3nm9mwi5w3v8a9fnm4a2cxid3la0r3sxs10azikn5yw0ib5"; depends=[ggplot2 lattice latticeExtra lazyeval testthat XML]; }; hypercube = derive2 { name="hypercube"; version="0.1.0"; sha256="0iv3cfs636mwijm2rjk427izf0gk5lh2fknd7bmb8pd188ckwqmf"; depends=[stringr]; }; + hypergate = derive2 { name="hypergate"; version="0.7"; sha256="02i8aywpdp0daxqrqnxfp2xk60jby268c064lcbggjb9nbm04q0m"; depends=[lattice]; }; hypergea = derive2 { name="hypergea"; version="1.3.6"; sha256="1k1525bkkj83j2nn9ixidb8vjvdmc4l9jvfarzgg532gg7wn3841"; depends=[]; }; hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; - hypervolume = derive2 { name="hypervolume"; version="2.0.8"; sha256="003r5x9w5fvx2z8ysadx0bihz521ndizi14x8z69hvg5g74xwz84"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; }; + hypervolume = derive2 { name="hypervolume"; version="2.0.10"; sha256="16q2h42c2q4b6hq5h6lkxgwizdln1nbq1l7n5f226zjlfrvgk8fx"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; }; hyphenatr = derive2 { name="hyphenatr"; version="0.3.0"; sha256="0mv77njy0ha7bj3kw620fk9r8cdzqd0v3ipikihqxq47fr57ml0v"; depends=[Rcpp stringi]; }; - hypoparsr = derive2 { name="hypoparsr"; version="0.1.0"; sha256="1bldiz5j6h9z499wwz8cbg5vshdmxgcd8qfxkz1a45q8b6nsd4vf"; depends=[data_tree readr RecordLinkage tibble]; }; hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; hysteresis = derive2 { name="hysteresis"; version="2.6"; sha256="00v19m52bg2i3zg8p7yj56axzj9sm64qr61226p5h7sn0zrpws3b"; depends=[car MASS msm]; }; @@ -7363,7 +7450,6 @@ in with self; { iFad = derive2 { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[coda MASS Rlab ROCR]; }; iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; }; iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; - iJRF = derive2 { name="iJRF"; version="1.1-4"; sha256="1fgbc0z647vwybffzp4iips86pxakd25dlk5jqgm049s6pa8m73v"; depends=[ggplot2]; }; iMRMC = derive2 { name="iMRMC"; version="1.1.0"; sha256="04wpqdds5vfqvl8n5g64vnyh4a40dxjh8l1bgw1vdz1372n0421g"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.4"; sha256="0pwvzd0k9m2jd7sizl436vs63rg9yinisrb0flz34yj5avn6rmb0"; depends=[mediation mvtnorm plotly]; }; iNEXT = derive2 { name="iNEXT"; version="2.0.12"; sha256="1041r5k0k3kzik5vwyd62s4yc85lnnxbg5gbbl0kl629kikymb6y"; depends=[ggplot2 reshape2]; }; @@ -7373,43 +7459,44 @@ in with self; { iRafNet = derive2 { name="iRafNet"; version="1.1-1"; sha256="0w9bry49apkrrrabglnv5w9l47jakmc30jh8q22a8gazwss293fb"; depends=[ROCR]; }; iRefR = derive2 { name="iRefR"; version="1.13"; sha256="17kjfga62xc4s1kii5clxszbag2dr1dyxfm7jasr20prx28ya6pp"; depends=[graph igraph RBGL]; }; iRegression = derive2 { name="iRegression"; version="1.2.1"; sha256="1kwsrmsflmqan96aj0dczlszfww1dlg6rwycyid52f7ghg9810rn"; depends=[mgcv]; }; - iRepro = derive2 { name="iRepro"; version="1.0"; sha256="1knncn47pl411r31z1r5ipsiyagcpjbc2gb972n7l3539pcpf0zy"; depends=[]; }; + iRepro = derive2 { name="iRepro"; version="1.1"; sha256="1sqg1n83m1308v6bk8ilra8w01frqyd8vpvmv63rllxz38r3vyhz"; depends=[]; }; iSDM = derive2 { name="iSDM"; version="1.0"; sha256="1hzs187mwv3k2wx6dpvkizjhkcx63mznd06wiw6047lf5jrlif0a"; depends=[ade4 colorRamps geometry geosphere maptools MASS pdist raster rgdal rgl sp virtualspecies]; }; - iTOP = derive2 { name="iTOP"; version="1.0.1"; sha256="1cjrbjrpfm27widw466kgkl5xlbyjf7ipk8ki8mfn3lqp9r2f3rc"; depends=[corpcor Matrix]; }; + iTOP = derive2 { name="iTOP"; version="1.0.2"; sha256="1n6nlmmx2h63nksycgzr7qsnd1j6bxa629av7cfd3ihriim7dj47"; depends=[corpcor Matrix]; }; iWISA = derive2 { name="iWISA"; version="1.0-2"; sha256="0jqi1kh7jlc04nb9d1w711q4i8j1vgwbxjls09z7853kv22wxfyz"; depends=[fda ggplot2 waveslim]; }; iWeigReg = derive2 { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6qw019fx8a7vsabm37867zycssn77z9nc8"; depends=[MASS trust]; }; iadf = derive2 { name="iadf"; version="0.1.0"; sha256="02zx9n4ncg10bbydrr05631vzc4w2b1jg3x6xiaffg7x5rh4mnyf"; depends=[dplR dplyr manipulate rlang tibble tidyr]; }; - ibd = derive2 { name="ibd"; version="1.2"; sha256="0681v7lgx697yj2d60cw3p5axbbaxanzj291vdf7ailn7300p1ms"; depends=[car lpSolve lsmeans MASS multcompView]; }; + ibd = derive2 { name="ibd"; version="1.3"; sha256="0a94vn5awn425qw99y8y38xivgzq16s3yvpkgld54p7jwhvmgxln"; depends=[car emmeans lpSolve MASS multcompView]; }; ibdreg = derive2 { name="ibdreg"; version="0.2.5"; sha256="1kaa5q1byi30wzr0mw4w2cv1ssxprzcwf91wrpqwkgcsdy7dkh2g"; depends=[]; }; ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; }; ibelief = derive2 { name="ibelief"; version="1.2"; sha256="1zh6bpg0gaybslr1p05qd5p2y5kxbgyhgha4j4v5d69d78jwgah9"; depends=[]; }; ibm = derive2 { name="ibm"; version="0.1.0"; sha256="0g6wg2qpa4q142xw2vq5pca4ll6pb8hyll5g0c93kk8crddk51s7"; depends=[Rcpp]; }; ibmcraftr = derive2 { name="ibmcraftr"; version="1.0.0"; sha256="0zm5j0a1wjj5agibp38h73qxpq0njvrhfq3077xhhfizcb3v24sb"; depends=[Rcpp]; }; - ibmdbR = derive2 { name="ibmdbR"; version="1.49.0"; sha256="1rr64gwdy65njy0a52y3vncp7hlkp0mmq5ik92xbs49f4vagz58a"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; + ibmdbR = derive2 { name="ibmdbR"; version="1.50.0"; sha256="151gg05gcy5wpyvyflr4mc0jq1npxzq9pc4spjc81x2igd14c370"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; ibr = derive2 { name="ibr"; version="2.0-3"; sha256="1plyz4sl0i8qhk9dh3h7zvh9h8wqr589jvasmvp7r3slp4ndhp1r"; depends=[mgcv]; }; ic_infer = derive2 { name="ic.infer"; version="1.1-6"; sha256="14vcwx5592br4zky9mq82akwk8pfiz7p1rx2jvyb48prrs2mm9gy"; depends=[boot kappalab mvtnorm quadprog]; }; ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; }; icRSF = derive2 { name="icRSF"; version="1.2"; sha256="1a7046lspk70cvrvzwzhnqcmc3cqa5a9bmzlw012jvcn39m2ca3l"; depends=[icensmis Rcpp]; }; - ica = derive2 { name="ica"; version="1.0-1"; sha256="1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq"; depends=[]; }; + ica = derive2 { name="ica"; version="1.0-2"; sha256="0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7"; depends=[]; }; icamix = derive2 { name="icamix"; version="1.0.6"; sha256="0jys9r7wjxlwsq5rssih2lvsar1192w8vigdhhrcmf3d5z5ic1kp"; depends=[Rcpp RcppArmadillo]; }; icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; icarus = derive2 { name="icarus"; version="0.3.0"; sha256="1656bz0av59dpgndibn0bc5zr9zka9pmw7qmhjz2b956bh7sh4ag"; depends=[]; }; iccbeta = derive2 { name="iccbeta"; version="1.1.0"; sha256="1xw0mz3ipkfz1jsjzwjnrm0af1gs31js7nvgy79cxqz31955zjww"; depends=[Rcpp RcppArmadillo]; }; - icd = derive2 { name="icd"; version="2.4.1"; sha256="1ygik4kd8ip4n8vjy2n6idj3cnc966sx41sckcqbjsqdsv5g5ghc"; depends=[checkmate magrittr Rcpp testthat]; }; + icd = derive2 { name="icd"; version="3.2.0"; sha256="0wd5d9zlhy9wh3phy4mz8zg0jv08hjizvlscaj208a64lwkzvq7g"; depends=[checkmate icd_data magrittr Rcpp RcppEigen testthat]; }; + icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; icenReg = derive2 { name="icenReg"; version="2.0.7"; sha256="1fc6l3mqnm4rcg49bk2plfa011g7nay71gzd4nxnjisifmw6qi2s"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; icensBKL = derive2 { name="icensBKL"; version="1.1"; sha256="12zx5x81jy48mp0l6a5ga0ikkjxvndv5cv2xf6d2lczfk7fz9lbp"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; }; - icesAdvice = derive2 { name="icesAdvice"; version="1.4-1"; sha256="0vhp4mh3isxibxr1i05vlxvrz53ni83s5khjvnk8i20dcri0501g"; depends=[]; }; + icesAdvice = derive2 { name="icesAdvice"; version="1.4-2"; sha256="10f1ss949gi7s5fhfbygqaf05pshalw6sa266v4gnxqwqynf4qbj"; depends=[]; }; icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; }; - icesSAG = derive2 { name="icesSAG"; version="1.3-2"; sha256="1w3v10qjs9jyn7dp6vsv8hyax8mn2b8y5afba4lcpzh0p8d2yzpm"; depends=[httr icesVocab openssl png xml2]; }; - icesTAF = derive2 { name="icesTAF"; version="1.5-1"; sha256="0sj9wswpaxch195rnwav2qbk2f25xc2kdzf9xr6p8l0adxnijmki"; depends=[httr]; }; + icesSAG = derive2 { name="icesSAG"; version="1.3-4"; sha256="1s330691an1m5h1i342ls6igqcqrlrwyhapa82x5h2krdia0nmnp"; depends=[httr icesVocab openssl png xml2]; }; + icesTAF = derive2 { name="icesTAF"; version="1.6-1"; sha256="0fsc79id8mcdp53xsrhzy43mvhginr3sixqhsxwvcz497kwdyj4a"; depends=[]; }; icesVocab = derive2 { name="icesVocab"; version="1.1-2"; sha256="15ha2visv44pphkahg766afafh6467lwznvppwkvqjrbfiijkc6l"; depends=[XML]; }; icmm = derive2 { name="icmm"; version="1.1"; sha256="1w9f1rniz67rrvq0akc64s5433ddmr2cgbcljil4c58yyz8hinx8"; depends=[EbayesThresh]; }; icosa = derive2 { name="icosa"; version="0.9.81"; sha256="05gpiksncdi536f4py7szfi6myny1gqj8i0hsgpma7cfcm3npn0l"; depends=[igraph raster Rcpp rgdal rgl sp]; }; icpsrdata = derive2 { name="icpsrdata"; version="0.3.0"; sha256="17sprbbi8fmvcp8d7hwrxl5amg0j036wq483cw62zbmni3p3fl82"; depends=[httr purrr rvest]; }; - icr = derive2 { name="icr"; version="0.5.3"; sha256="178j4xyaxkzi6fxajw5qkab9ifabaj3lvhk2qqipb6n5p68cd9bn"; depends=[ggplot2 Rcpp reshape2]; }; - icsw = derive2 { name="icsw"; version="0.9"; sha256="0lmq9l9sy0fz3yjj2sj8f19iy26913caibf7d9zb9w9n6cqskvlx"; depends=[]; }; + icr = derive2 { name="icr"; version="0.5.4"; sha256="0vm2k2pjsnikb80crzhxs1wpxpjjigyny5ldini6sxg3lwhc14l3"; depends=[ggplot2 Rcpp tidyr]; }; + icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; idar = derive2 { name="idar"; version="1.0"; sha256="1yfv3na4rcldkpzybf7la227z4ynsl1scrziirl5gp072k7zrs01"; depends=[ape FD picante spatstat]; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; idbr = derive2 { name="idbr"; version="0.3"; sha256="02syk7fmif0xnddl8189vnl329r8mwl3iwv2rsf6cw7mwg30fhyw"; depends=[countrycode dplyr httr jsonlite]; }; @@ -7426,11 +7513,11 @@ in with self; { idx2r = derive2 { name="idx2r"; version="1.0.0"; sha256="14d3rasnf8mghwzpg6h4larybgy7drrv0jh71x28qwry49acsqyh"; depends=[]; }; ie2misc = derive2 { name="ie2misc"; version="0.8.5"; sha256="1i59836a3kjsra5ibk66ic35yqk28p3biylall8gngjssiig92c1"; depends=[data_table gWidgets2 gWidgets2tcltk lubridate openxlsx qdap reader readxl stringi]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; - iemisc = derive2 { name="iemisc"; version="0.9.6"; sha256="0yr2pqklj3qjlmkk2sc5rgi8dfnm9jdaagzh2dhm05lharhfzy6d"; depends=[data_table fpCompare gsubfn iemiscdata pracma r_import zoo]; }; + iemisc = derive2 { name="iemisc"; version="0.9.7"; sha256="152qmwyfpdzif9wbjk6j60sfamy8l2fhrr3vjw5m3c05grczyn7m"; depends=[CHNOSZ data_table fpCompare gsubfn IAPWS95 iemiscdata listless pracma r_import rgdal sp stringi testit units zoo]; }; iemiscdata = derive2 { name="iemiscdata"; version="0.6.1"; sha256="0a9x90kisgmrka0frk9myb1qdq3nl092n78wrif31b42arifa8h9"; depends=[]; }; iemisctext = derive2 { name="iemisctext"; version="0.9.99"; sha256="02rr7sjjbrvfxwjl87f2ki245a8cw5fvx7z2z4rl8ixxlyxj9p5v"; depends=[]; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; }; - ifaTools = derive2 { name="ifaTools"; version="0.14"; sha256="1m10j0isbaa30rd3dnvig9v9mwizmns36q8haaw07y8zw6mngzra"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; + ifaTools = derive2 { name="ifaTools"; version="0.17"; sha256="02w0igwhi23iym47wn81ghhixc8nlcbfw2l77zakqwiabkq4ji82"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.2"; sha256="18g0l0vh9z4nvl6jil32983c4z1dvawrivi4kz4g562q3habm279"; depends=[]; }; ifs = derive2 { name="ifs"; version="0.1.5"; sha256="03g9cgs0zp89b1d7rpcn5clkvmg0spnariwrifd8hha476ldvfcy"; depends=[]; }; ifultools = derive2 { name="ifultools"; version="2.0-4"; sha256="0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"; depends=[MASS splus2R]; }; @@ -7441,22 +7528,23 @@ in with self; { igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.4.3"; sha256="0124d7h8n83zb5kvvavccprlqknpqrd634zv7sz9s915xzhp7jgz"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr plyr RColorBrewer S4Vectors scales]; }; ihs = derive2 { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; }; - iilasso = derive2 { name="iilasso"; version="0.0.1"; sha256="08d5j0dvi8k0hzn4xn4nzplc1fliqz11jd9i4pfj80ggl5dmc2x1"; depends=[BH Matrix Rcpp]; }; + iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; ijtiff = derive2 { name="ijtiff"; version="1.1.0"; sha256="0hb201qcwynbdi2fzspvv9sdhyx0cypbsvhawhcwj5zqdp6f507f"; depends=[checkmate fields filesstrings magrittr purrr Rcpp readr rlang stringr]; }; iki_dataclim = derive2 { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; - imPois = derive2 { name="imPois"; version="0.1.4"; sha256="07350zly4fyx2sf9cqpfpyy8l5kn96z49kzym81p2bmhq66d408h"; depends=[geometry rgl]; }; - imageData = derive2 { name="imageData"; version="0.1-41"; sha256="1rkkg9zzhkamql5y47kx9s8p7fnffgm7hgsdv85brj45gc441sfm"; depends=[dae GGally ggplot2 Hmisc RColorBrewer reshape XLConnect]; }; - imager = derive2 { name="imager"; version="0.40.2"; sha256="17awk431r37259c0yqs6c31kyiwhm9j80g2hw9hkk21jbi4jbghj"; depends=[Cairo downloader jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; + imageData = derive2 { name="imageData"; version="0.1-50"; sha256="0i56sksyxa50bhp3pimgag2bg37y1gfadky6i0xgg484wf1xw148"; depends=[dae GGally ggplot2 Hmisc RColorBrewer reshape XLConnect]; }; + imager = derive2 { name="imager"; version="0.41.1"; sha256="0ja8pi8l44llq75af4y8blb6vby43ikmy87sx83i1i327zfjzd5g"; depends=[Cairo downloader igraph jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; + imagerExtra = derive2 { name="imagerExtra"; version="1.1.1"; sha256="02ws4l52a3jrgqmn76p6p54mnb0ypvkd39yj8pqn8qg8l44fp3nw"; depends=[dtt imager magrittr Rcpp]; }; imaginator = derive2 { name="imaginator"; version="0.1.1"; sha256="1xp5wsv570f1qy2fn99d8ijydmlapb6h6kinj07pilvv215dg93w"; depends=[assertthat dplyr lubridate magrittr stringi]; }; - imagine = derive2 { name="imagine"; version="1.3.1"; sha256="0sgzsyqqfi7rcs2xqxdc6f9kji09wsa38lxv7k2vymy3kdy8p9f6"; depends=[Rcpp]; }; + imagine = derive2 { name="imagine"; version="1.4.0"; sha256="1v0rds64i0f3xgg7ca14ncw4nrcc80gvjf1fbp498idq38z79qzc"; depends=[Rcpp]; }; imbalance = derive2 { name="imbalance"; version="1.0.0"; sha256="1pfhwf4844m0a8qsm852am63x18vlkbs6m1s9izrpd219616skpr"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; }; + imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; imfr = derive2 { name="imfr"; version="0.1.5"; sha256="1f4zynra79h42dmd9qhg67wwvs7c640f5is98bq30fdphiybihgz"; depends=[dplyr httr jsonlite]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; - iml = derive2 { name="iml"; version="0.3.0"; sha256="0jz3gw45lyb4ddw9pdfj797aipha2bwcmqrf7dyxx0ga3cfxv7ay"; depends=[checkmate data_table ggplot2 glmnet Metrics partykit R6]; }; - immer = derive2 { name="immer"; version="0.8-5"; sha256="181mp407vy2ij35ggr1vi80y8ak6vyjplyvps1fdpxnanp1mqpw3"; depends=[CDM coda psychotools Rcpp RcppArmadillo sirt]; }; - imp4p = derive2 { name="imp4p"; version="0.5"; sha256="0s1vq64qspni5fqzz781a1l8ldfbwhb57h8z4dr5k9bama5s3g6l"; depends=[imputeLCMD Iso Rcpp truncnorm]; }; - implyr = derive2 { name="implyr"; version="0.2.3"; sha256="0ap7qdnwm1gcfl67r6bfjmk9ji4z30plclwnwzlv5j7yx5si6lps"; depends=[assertthat DBI dbplyr dplyr rlang tidyselect]; }; + iml = derive2 { name="iml"; version="0.5.1"; sha256="043n14samxl85by7vihrc7nv45kaj287m0ab04fssvfn8rnprqlh"; depends=[checkmate data_table ggplot2 glmnet Metrics partykit R6]; }; + immer = derive2 { name="immer"; version="1.0-138"; sha256="0jpjrvr3mpgqfyl56i95grb3jmrzzs00ciafsw9rd7fpbxnskkjf"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; + imp4p = derive2 { name="imp4p"; version="0.6"; sha256="1aaj62ia87khkdkw6lx59dcx3lq1clfdzw7gbi0ffy99lp608q6s"; depends=[imputeLCMD Iso Rcpp truncnorm]; }; + implyr = derive2 { name="implyr"; version="0.2.4"; sha256="1xc5c8wpq1bdvfm4rkqmvykgkil9fm9n1q9ndjv701jbdr4rnisd"; depends=[assertthat DBI dbplyr dplyr rlang tidyselect]; }; r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; importar = derive2 { name="importar"; version="0.1.1"; sha256="0xv445fmjhsbdlsq03k2rlycnggn3rcyq5a49zrg4jvjamzr0rgr"; depends=[]; }; imprProbEst = derive2 { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; }; @@ -7466,9 +7554,10 @@ in with self; { imputeMulti = derive2 { name="imputeMulti"; version="0.6.4"; sha256="0ngjbj8pl5mwprrgy234a5p9dhf615z7ymfv8184hby1z6ib3mgl"; depends=[DBI gtools Rcpp RSQLite]; }; imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; }; imputeR = derive2 { name="imputeR"; version="2.0"; sha256="0xyvy785jb1mv06jq25cnsbgiywi3857sdiizcjck7bx970lk02n"; depends=[caret Cubist gbm glmnet mboost pls rda reshape2 ridge rpart]; }; - imputeTS = derive2 { name="imputeTS"; version="2.6"; sha256="14hkz9y6r8nl036zwi8c7k54bbkyz7zmvnq8ln7pwl15kgpcadkf"; depends=[forecast Rcpp stinepack]; }; + imputeTS = derive2 { name="imputeTS"; version="2.7"; sha256="12y6qzy00kb7jap4h92f3zpgdazlw3y4zydhv7gzfsmx1ka7nsfm"; depends=[forecast magrittr Rcpp stinepack]; }; imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.1"; sha256="0yxvwk1bcsid116a4zqsagf2dl3vhzva559bfjjcqdgyniapcmcj"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; }; imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; + imsig = derive2 { name="imsig"; version="0.1.0"; sha256="0qjr2xbha6ikcfmkl0crhf9akrbygwsk87xhb45q8633fk3ssw51"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; inTrees = derive2 { name="inTrees"; version="1.2"; sha256="1mwn2ijkyw0y9xcgrr56wxd2326ikarlsi79l59dplvlx2iwbi6c"; depends=[arules data_table gbm RRF xgboost xtable]; }; inaparc = derive2 { name="inaparc"; version="0.2.0"; sha256="0rgbnvvqzbx4j40qz32l1bxmg3wwzbl6719wb9m3xpakblvhhxs2"; depends=[kpeaks lhs]; }; @@ -7478,14 +7567,14 @@ in with self; { inca = derive2 { name="inca"; version="0.0.3"; sha256="1g9js84xa5b6jl8gp4k0c55kjazfaw5g9biwk4v6vz3vwkwayyzh"; depends=[Matrix Rcpp RcppArmadillo]; }; incadata = derive2 { name="incadata"; version="0.6.1"; sha256="05i0zifdzc1w6p6annhzp9rdd4v82gx2sxi4lqpdnraaczdrhgbb"; depends=[backports decoder dplyr rccmisc rvest sweidnumbr xml2]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; - incidence = derive2 { name="incidence"; version="1.2.1"; sha256="0fjbccsyrxjmc17kzqhh1ykx1ai6a8gmbxsjr42crm8bjpnq77iy"; depends=[ggplot2 ISOweek]; }; + incidence = derive2 { name="incidence"; version="1.3.1"; sha256="0qylfim4gc9i9dyhyjpfar95rznbf1lh06hvvjmxxyrc1a7lzaxw"; depends=[ggplot2 ISOweek]; }; inctools = derive2 { name="inctools"; version="1.0.11"; sha256="08a1aqsx1f1mkykpgbqbgvai60zxj9zwpmxynyajbm4lwr3rc6rp"; depends=[cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma tmvtnorm]; }; indelmiss = derive2 { name="indelmiss"; version="1.0.8"; sha256="0674hvgdq0fxab3h55iililphrr6lqp25359crvkqqgb8higbs0h"; depends=[ape numDeriv phangorn Rcpp]; }; indicspecies = derive2 { name="indicspecies"; version="1.7.6"; sha256="0a7s37k3bg4cnzkvn833nrwi6hnfa5f6jxa8ra954v4sp55g6i5d"; depends=[permute]; }; indirect = derive2 { name="indirect"; version="0.2.0"; sha256="1k7xwsx655nzl43s1mkaysyn5gydq973gynmqip67lssnm7cnch4"; depends=[gplots MASS]; }; inegiR = derive2 { name="inegiR"; version="2.0.0"; sha256="00bhb3zvqhir2rqza3axk98lxhq98s41apwpsm242pqb7wsnmg95"; depends=[jsonlite plyr XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; - infer = derive2 { name="infer"; version="0.1.1"; sha256="1ln2vw4d4xcy9g6cv594glrrcqwmjynv0mfq6nsl1h94gz8wnh8a"; depends=[assertive dplyr ggplot2 magrittr rlang tibble]; }; + infer = derive2 { name="infer"; version="0.2.0"; sha256="1wkfbrwq616nj1k0rmwvbnqy8ngrmxc49d6j69s5vpws2g3ga00j"; depends=[assertive dplyr ggplot2 magrittr rlang tibble]; }; inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; inferference = derive2 { name="inferference"; version="1.0.0"; sha256="1x6i8ycba9z57m1n143p1j9pmlfrhjhi4iw0fsny8xmcvqrlr85p"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.0"; sha256="1z5bfq0gv1h6iw8nwc19ar6f2sgsvgs3ghq52s09wclqk2yy4azz"; depends=[dplyr magrittr purrr Rcpp rlang shiny tibble tidyr]; }; @@ -7494,20 +7583,22 @@ in with self; { influence_SEM = derive2 { name="influence.SEM"; version="2.2"; sha256="1cabl6486mlrmk0418s18wii3n6nl1ckv6w9281wdk4fy27y9qk2"; depends=[lavaan]; }; influenceR = derive2 { name="influenceR"; version="0.1.0"; sha256="12p9362hkndlnz1rd8j2rykg57kbm6l7ks60by3rd25xg50k5jag"; depends=[igraph Matrix]; }; influxdbr = derive2 { name="influxdbr"; version="0.14.2"; sha256="03dzw86mvbc8w38q9skjki1z17vc04k9q8dx7sd3xg6xbr10f9d9"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr xts zoo]; }; - infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.0"; sha256="1gmsf4gw6xf70sh7y5hagkavknp80293sb7wgx6lycngq2acmi4w"; depends=[MASS]; }; + infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.1"; sha256="04fgmz58nvw0jwbj8y1r42ny84024h47w9cc0z96aqag5kg1wmxm"; depends=[MASS]; }; informR = derive2 { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; }; infotheo = derive2 { name="infotheo"; version="1.2.0"; sha256="18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv"; depends=[]; }; infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; }; infraFDTD_assist = derive2 { name="infraFDTD.assist"; version="0.6"; sha256="04j5nl5vxk79iciz6s9bpiyn319c2dbh7fdahgwira2r30w2fxv9"; depends=[fields]; }; infuser = derive2 { name="infuser"; version="0.2.8"; sha256="07qgszk8gsx3yvy47iqgp5zykn26jm65ncvyqqgwrdgibf2zamgh"; depends=[]; }; infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; - ini = derive2 { name="ini"; version="0.3.0"; sha256="0ybqklgbij69dvq8dxl8z2mb9fhdizcdcm9b5hg5n1x20ph3vbyj"; depends=[]; }; + ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; inlabru = derive2 { name="inlabru"; version="2.1.3"; sha256="09sdbzg3cdg43clkwnahkhyns019gjya55m6zhq340mgrnirx2i5"; depends=[ggplot2 rgdal rgeos sp]; }; - inline = derive2 { name="inline"; version="0.3.14"; sha256="0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"; depends=[]; }; + inline = derive2 { name="inline"; version="0.3.15"; sha256="0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; inlmisc = derive2 { name="inlmisc"; version="0.4.0"; sha256="0hhw87zvqd2mplpbmbh1y91pyfgyqamw4wiz74a6qwn705bcymah"; depends=[checkmate dplyr GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos sp xtable]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.6"; sha256="0fwznjsq4wccqfnb3a5ic1nyx538jxmlcv59xdz06y6raczjp9q9"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; + inplace = derive2 { name="inplace"; version="0.1.0"; sha256="1lmvfjxgficlzxbn953wvfa1n9lys9gqprix6zbqqr4d6vkm0srj"; depends=[Rcpp]; }; + insect = derive2 { name="insect"; version="1.1.0"; sha256="11r21ljif0pwswmmdzbyy3i9q2rwxn7izhr44dkiwcyjv7yig54j"; depends=[ape aphid kmer openssl phylogram xml2]; }; insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; insol = derive2 { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; inspectr = derive2 { name="inspectr"; version="1.0.0"; sha256="04rpr5ajpdx1d49y327dryxwxk27yljj4c96i9qglf02i9kmplkg"; depends=[openxlsx]; }; @@ -7515,28 +7606,29 @@ in with self; { install_load = derive2 { name="install.load"; version="1.2.1"; sha256="148q0rjal5hfcb8ilxzd1bz38mn8vxqrsfg5x4jy48psk00fk3d9"; depends=[]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; intReg = derive2 { name="intReg"; version="0.2-8"; sha256="0cqf6lbn8aiyj5j7gg1qz80i477bfxbmxp7fjs25ish4bcdsbjja"; depends=[maxLik miscTools sets]; }; - intRegGOF = derive2 { name="intRegGOF"; version="0.85-1"; sha256="0fyvhl6jmi6krfbimsq61dhixlz9h9jxk4yjvwbx2vl8d9fnnr54"; depends=[]; }; + intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; - intamap = derive2 { name="intamap"; version="1.4-1"; sha256="1shyxlps1rxqavrvg55gw0c9115q0j3yw78ilavig7036zx5lazv"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; + intamap = derive2 { name="intamap"; version="1.4-9"; sha256="060sghkqsdrxpa340rvjskh2wafdkffa5q8nlbg1msnsmk639lkn"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-12"; sha256="1h8kzinfpp2rwal11xqs9g99rmigs0jlsr5h0qh0zsill73minid"; depends=[automap gstat intamap rgdal sp spatstat spcosa]; }; - intccr = derive2 { name="intccr"; version="1.0.0"; sha256="1y3rrxr9m8s6xvg4j8w9a2673kl1g5mmzz2p5dxjr6ddlfl8aji3"; depends=[alabama doParallel foreach numDeriv]; }; + intccr = derive2 { name="intccr"; version="1.0.2"; sha256="1vdrdig82xbg4ax67vsr00v28z40qd54kcw6b8cml59sqn13zxl2"; depends=[alabama doParallel foreach numDeriv]; }; + intcensROC = derive2 { name="intcensROC"; version="0.1.1"; sha256="0qkgp6iw2s772zk2533jsar64f5mqgy4874swgarnfgd4jvkwy2k"; depends=[pracma Rcpp RcppEigen]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.5"; sha256="13p1r3rccsmaqwn0mrskr86jpww72aaq8zf2a8rnbpzkfrq9ni14"; depends=[abind doParallel foreach ltm MASS mclust]; }; interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; interactionTest = derive2 { name="interactionTest"; version="1.0.1"; sha256="021qsg9rglc4vj3hkrvfm2snd77zna7ql2i0m5hf77yzxxc35jc6"; depends=[]; }; intercure = derive2 { name="intercure"; version="0.1.0"; sha256="0j71dqcbcfl1zpfidh3xys5h3ggyhrzq3avkdm9v18pv464x8xlv"; depends=[foreach iterators MASS Matrix survival]; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; }; - interflex = derive2 { name="interflex"; version="1.0.3"; sha256="07a41rx553i6rlgcl4aa2xxkdql3y7bi84h2pgak9qbyxgw6mlmq"; depends=[doParallel foreach ggplot2 Lmoments lmtest mgcv pcse Rcpp RcppArmadillo sandwich]; }; + interflex = derive2 { name="interflex"; version="1.0.4"; sha256="1w92h0ay0rx8gy9jcj179206lz9irg8g0ryl31p3ijqip73v55rm"; depends=[doParallel foreach ggplot2 lfe Lmoments lmtest mgcv pcse Rcpp RcppArmadillo sandwich]; }; interfr = derive2 { name="interfr"; version="0.1.0"; sha256="1wn7i8dsll1qq3v39hgpbqnkjc8f4wlffy73453rw9lpq61y2fgj"; depends=[CircStats colorSpec plotrix]; }; intergraph = derive2 { name="intergraph"; version="2.0-2"; sha256="1ipxdrfxhcxhcbqvrzqh3impwk4xryqlqlgjl7f2mwrf365zs6ph"; depends=[igraph network]; }; interim = derive2 { name="interim"; version="0.7.0"; sha256="05hgypckfjb9pr60cv6m8lgqibdkgksw13gy8g1rmd9njs6qcb8i"; depends=[]; }; + interlineaR = derive2 { name="interlineaR"; version="1.0"; sha256="0y1ym6iwly8sv94pdzwv2qy1g7z4hpqlrbcrpb1ds5a62a6axqj5"; depends=[reshape2 xml2]; }; internetarchive = derive2 { name="internetarchive"; version="0.1.6"; sha256="1cx9dxlrdz1xak4jrrjs2wsq6ml8n2xl0n0s6n9h3g247j4lfvnm"; depends=[dplyr httr]; }; interp = derive2 { name="interp"; version="1.0-31"; sha256="0zrqlzsl71fggwy8qvhggzxphbc7ld2gahsh8h5aawvkpfz5jm8k"; depends=[deldir Rcpp RcppEigen]; }; - interplot = derive2 { name="interplot"; version="0.1.5"; sha256="0svhs7mj987vravirhmp4788qvqm32v614qj7q06b2y4va477yj8"; depends=[abind arm dplyr ggplot2]; }; + interplot = derive2 { name="interplot"; version="0.2.1"; sha256="0kg17g12dccs6imdqkyagm3zqziah4hvlba72irpck03w6z4sdb3"; depends=[abind arm dplyr ggplot2 gridExtra interactionTest purrr]; }; interpretR = derive2 { name="interpretR"; version="0.2.4"; sha256="0nfh3pyr7nn0r41xk0mfb4fs5rjkbh43lbw14x7pdmbgzpgsc22c"; depends=[AUC randomForest]; }; interval = derive2 { name="interval"; version="1.1-0.1"; sha256="1lln9jkli28i4wivwzqrsxvv2n15560f7msjy5gssrm45vxrxms8"; depends=[Icens MLEcens perm survival]; }; intervals = derive2 { name="intervals"; version="0.15.1"; sha256="1r2akz8dpix1rgvdply4r3m2zc08r0n96w9c97hma80g61a3i2ws"; depends=[]; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; }; - intpoint = derive2 { name="intpoint"; version="1.0"; sha256="0zcv64a0clgf1k3ylh97q1w5ddrv227846gy9a68h6sgwc0ps88b"; depends=[]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.1.0"; sha256="0mxg9dvhn5rr1rchpqzf5i1p37kvabcb9jyqbn49zgzcwdvm6cbs"; depends=[yaImpute]; }; introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; }; intrval = derive2 { name="intrval"; version="0.1-1"; sha256="1p66cjpn43xib7rrnyv3jqr6bb49d3dxf888p8hxnr7kx9wfalkn"; depends=[]; }; @@ -7550,7 +7642,6 @@ in with self; { io = derive2 { name="io"; version="0.3.0"; sha256="16mnbxq217ixfg2qfqrj97qqfpc5dj622hf80nwray6hp47lbw2s"; depends=[filenamer stringr]; }; ioncopy = derive2 { name="ioncopy"; version="2.1.1"; sha256="1lkav3xvh2qazfmcxwisrjy8wzf639a4md71499jj5rmy650crys"; depends=[shiny]; }; ionflows = derive2 { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[Biostrings]; }; - ionicons = derive2 { name="ionicons"; version="0.1.1"; sha256="0v7icjx2bpb0hd3j8a14lijklyjkmw7qgp336z66wzscm6f411ip"; depends=[png rsvg xml2]; }; ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; }; iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; @@ -7558,23 +7649,26 @@ in with self; { iotools = derive2 { name="iotools"; version="0.2-5"; sha256="0rn6kvlcijnhlwajh6nmi80qlamxgz0x3pn09yp4hyfpl3zxg1fz"; depends=[]; }; ipdmeta = derive2 { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; }; ipdw = derive2 { name="ipdw"; version="0.2-6"; sha256="1jfixvywxdhnpqz62ld2c8n6yacg88q3y1n1aisqqb7szz0zf23z"; depends=[gdistance raster sp]; }; + ipeaData = derive2 { name="ipeaData"; version="0.0.2"; sha256="1nggkcb8rrnc3d14nhzpf48f2dpf6jcsw54i40jcp7656jqv1jnb"; depends=[data_table dplyr httr jsonlite RCurl]; }; ipflasso = derive2 { name="ipflasso"; version="0.1"; sha256="12cyn7wpkrjqrjccb26mi375ijqplps4216ldj7w3az9g8pzihv3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; - iplots = derive2 { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[png rJava]; }; + iplots = derive2 { name="iplots"; version="1.1-7.1"; sha256="1bz8n9cnx6zy3wsr49h55r0l5ikfl0xjg4r76fi4giid2a3ba4lf"; depends=[png rJava]; }; ipred = derive2 { name="ipred"; version="0.9-6"; sha256="1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.7.1"; sha256="01sav9594grc413kf6s9jnp4hs4q9f9424qphm91xckydiqisaav"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; ips = derive2 { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; }; + iptmnetr = derive2 { name="iptmnetr"; version="0.1.2"; sha256="1m5rw66qbv5pa91ywvir2i0wnwa0j6z75242bc468d2hakz62k99"; depends=[httr jsonlite]; }; iptools = derive2 { name="iptools"; version="0.4.0"; sha256="0c3j5sl129xl75p14qr880ll1y3yss3zqg39zbj2jp6wcv9rvafx"; depends=[AsioHeaders BH ISOcodes Rcpp]; }; - ipumsr = derive2 { name="ipumsr"; version="0.1.1"; sha256="0bms1jl1hwqcz6awdgs0wpxvxgsydrvfmp10qnhglh52nckf0dyb"; depends=[dplyr haven purrr raster Rcpp readr rlang stringr tibble tidyr xml2]; }; + ipumsr = derive2 { name="ipumsr"; version="0.2.0"; sha256="0rmcl2jq12yvc5lqyi1mi5ggl59w2g6zvf3w1zpnb261vlrvikda"; depends=[dplyr haven purrr raster Rcpp readr rlang stringr tibble tidyr xml2 zeallot]; }; ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="1.0"; sha256="1n1j1crxnnfkg38drgg8rhc13y6s8hcsr5g0f6hi4v680dgrkhmp"; depends=[nleqslv]; }; - iqLearn = derive2 { name="iqLearn"; version="1.4"; sha256="0vgnfr6x6f6qlnag63brnkdymlmm2vbkl8fg02w98qsc48lal454"; depends=[]; }; - irace = derive2 { name="irace"; version="2.4"; sha256="07xzg4jcq0rjdq1drs3xh02y29z1gmkjkw54apmaqzc0s1pwzkk4"; depends=[]; }; + iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; }; + irace = derive2 { name="irace"; version="3.0"; sha256="1p7amffds888zfg05lfkmvl2ciydmf8bn42g2kgfy13k9r2bk96r"; depends=[]; }; ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; }; irlba = derive2 { name="irlba"; version="2.3.2"; sha256="0f7wb12wa0zbyllk5adcf4f517wgjpkhsx4j176i9ax6xy7jvprz"; depends=[Matrix]; }; irr = derive2 { name="irr"; version="0.84"; sha256="0njxackqj8hyf9j1yszwxbnaxgp27fc2bwyyf7dip72wc12f81n5"; depends=[lpSolve]; }; irrNA = derive2 { name="irrNA"; version="0.1.4"; sha256="1i7s4c285dw1s2kiq01a81cfpd2v40y26yklr06xlmqp28iwslbr"; depends=[irr]; }; + irregulAR1 = derive2 { name="irregulAR1"; version="1.0.0"; sha256="0pccasqcya99j4n0qdcjjnvmigj53axji9ddxbpmrgvzsyamb8ja"; depends=[Matrix Rcpp RcppArmadillo]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; irtoys = derive2 { name="irtoys"; version="0.2.1"; sha256="0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q"; depends=[ltm sm]; }; @@ -7584,9 +7678,9 @@ in with self; { isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; isdparser = derive2 { name="isdparser"; version="0.2.0"; sha256="061wi94rj3iyvf3dgvcjy0x46hvwhr4ifx0jhirz44bj0c8g3h7j"; depends=[data_table tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; - island = derive2 { name="island"; version="0.1.3"; sha256="1wb44zyfkgk62aidw5qg660473dxh9nyahmxzxn7ffmi8a0hmdnf"; depends=[]; }; - ismev = derive2 { name="ismev"; version="1.41"; sha256="19vmjgz1baqkryi34ffhjznc46z3zwqaqblwafhk9fd50xgn4bi6"; depends=[mgcv]; }; - isni = derive2 { name="isni"; version="0.2"; sha256="1092sz4xskrvpxlkxnd8s7lzwqy1qnim63lzx55sspqcwdbry5hn"; depends=[Formula matrixcalc mvtnorm nlme nnet]; }; + island = derive2 { name="island"; version="0.2.1"; sha256="0fg5nlg5iq3cl3i8xx9qq4vvizdklg6adjxmp2qrg0dyfvkllhsq"; depends=[]; }; + ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; }; + isni = derive2 { name="isni"; version="0.3"; sha256="0j5hy6y9br0l3xn3lx0r17hdbm1z1i49rnr2kb9z7igbq1y87pf5"; depends=[Formula matrixcalc mvtnorm nlme nnet]; }; isnullptr = derive2 { name="isnullptr"; version="1.0.1"; sha256="0kwjxq59n3qncdw63vsdvz7v5mzbl5lmckdfgiiw35pzmahnxzh9"; depends=[]; }; isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; @@ -7594,7 +7688,7 @@ in with self; { isoph = derive2 { name="isoph"; version="1.1.2"; sha256="1qw98cnil3rb9d3vbii8drca744qig6bfd3rc74dxm23cj86f66g"; depends=[Iso survival]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; - isqg = derive2 { name="isqg"; version="1.0"; sha256="0ym3d916lpr1bmmla599xg13c8k0wvyi7b6jhzlrxi6nj5ci0vad"; depends=[BH R6 Rcpp]; }; + isqg = derive2 { name="isqg"; version="1.1"; sha256="0vl3x498xzixhnxwwd52pwv79ym4hzj1c7f7mv8p3966281xhkfc"; depends=[BH R6 Rcpp]; }; isva = derive2 { name="isva"; version="1.9"; sha256="05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"; depends=[fastICA JADE qvalue]; }; italy = derive2 { name="italy"; version="0.1.0"; sha256="0is90xp6980ja12jzi3816jq1y90ifcw6cvfmybb7invj6rr1cks"; depends=[]; }; itan = derive2 { name="itan"; version="1.0"; sha256="082vh5gvh8hgyhk8nswll16ldhnp0pfpxnz1yx05zsc4nzvm92cf"; depends=[ggplot2 reshape]; }; @@ -7602,7 +7696,7 @@ in with self; { iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; iterLap = derive2 { name="iterLap"; version="1.1-3"; sha256="079d4hxf1ha8pgibzb4r1yk7xqpzndd7hjbp8294qb26jvvcnd8q"; depends=[quadprog randtoolbox]; }; iterators = derive2 { name="iterators"; version="1.0.9"; sha256="16sycjq912ix52fjxjhcwiaqr0yj1v5iqmrvjljd3z857031w06y"; depends=[]; }; - iterpc = derive2 { name="iterpc"; version="0.3.4"; sha256="1nbwd6lx6srjb94skghy4jd323sn8a08wvh8r5zqa4l69qg47r65"; depends=[gmp iterators Rcpp]; }; + iterpc = derive2 { name="iterpc"; version="0.4.0"; sha256="0py11pvhl71v9fl0a6n317va8cggih4l0afn6yldnah9ai2cakvy"; depends=[arrangements gmp iterators]; }; itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itree = derive2 { name="itree"; version="0.1"; sha256="164zgr142hcp9plnbccs6m823p4m0prk73bvp54bc7bqnqmc3d9a"; depends=[]; }; @@ -7617,8 +7711,10 @@ in with self; { ivpanel = derive2 { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; }; ivprobit = derive2 { name="ivprobit"; version="1.1"; sha256="05b5gf5gmi2yrkg61n7w12qlgpnjakd1z8hhqxy6py8hahsf84gm"; depends=[Formula]; }; ivregEX = derive2 { name="ivregEX"; version="1.0"; sha256="0zh3rqvhn8ald6lxv9kywy2v1p0nr9ijv6plhpbxc6k51zzsgyl8"; depends=[AER Formula lmtest sandwich]; }; + ivtools = derive2 { name="ivtools"; version="1.0.0"; sha256="06g99wcm5hhn4avahcq9ldk4riwrz7q90yvc8f5fal70d3ca8x73"; depends=[data_table numDeriv]; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; }; jaatha = derive2 { name="jaatha"; version="3.2.0"; sha256="00886j0cabrq6a69w8s1gsfkmx1wqs1vpxjafpm71msk54r0dj55"; depends=[assertthat R6]; }; + jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; jackstraw = derive2 { name="jackstraw"; version="1.1.1"; sha256="18iah8sq64p7c6rxs21w8rbxvbmbh03jzqbam1ilp46ayfqzk9qc"; depends=[corpcor lfa]; }; jacpop = derive2 { name="jacpop"; version="0.5"; sha256="056c82d4a10rgq0p4p63y9i94dy1kqp3yh7xms9nx9q2xb940xb5"; depends=[]; }; @@ -7630,49 +7726,51 @@ in with self; { jcext = derive2 { name="jcext"; version="0.1"; sha256="18vmf57l2kv3rvi6laqp948m8mjkdxdy0vi4xp68480b2mjmvij1"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; jcolors = derive2 { name="jcolors"; version="0.0.2"; sha256="0d71sdvj7hwafj0sx2z1nyza5j2lfd8y5yj1p94yrw32wi7b89jn"; depends=[ggplot2 scales]; }; jdx = derive2 { name="jdx"; version="0.1.3"; sha256="0d9m0sbdrlh8jfijn5mrfw8y2bpj5vxm0bcjlcc42ipxj47962l9"; depends=[rJava]; }; + jeek = derive2 { name="jeek"; version="1.1.0"; sha256="0s5gsgsznn8n39s0s35qxdl0q7bkvqlrf9xhland3xlzcrvpyp2g"; depends=[igraph lpSolve pcaPP]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; - jiebaR = derive2 { name="jiebaR"; version="0.9.1"; sha256="1qv4k5fgi40ppivdk3mxkhawyf2443h2lz5b9gvai9sqj6vf0s8k"; depends=[jiebaRD Rcpp]; }; + jiebaR = derive2 { name="jiebaR"; version="0.9.99"; sha256="1g39z9ms975ig2j9nd6nqja1l8gy50fa9pwlz563xk6p2z6v058j"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jmcm = derive2 { name="jmcm"; version="0.1.8.0"; sha256="0nv30shwd1219cvs9kaql0n7ppwqngj3avf2qd7nzrnbqp2gl23h"; depends=[Formula Rcpp RcppArmadillo]; }; - jmetrik = derive2 { name="jmetrik"; version="1.0"; sha256="0xnbvby03fqbxgg0i0qxrrzjv98783n6d7c1fywj81x487qlj77j"; depends=[]; }; + jmdem = derive2 { name="jmdem"; version="1.0"; sha256="1qz2l02m4gnxrm1ankr5qqlskl8amphzj8r763yas218fvzfa34q"; depends=[statmod VGAM]; }; + jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; }; jmotif = derive2 { name="jmotif"; version="1.0.3"; sha256="1llmrksajrd35kfdzq2vqfm17yv5kwark6gz3rvyzcmbrqk5spqv"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="1.4"; sha256="1vrihjvq8l2q7d3z80fkzzzwg6xmnfi8sipsgwic1lcbv6vnqndp"; depends=[]; }; jmv = derive2 { name="jmv"; version="0.8.6.2"; sha256="0an3ni6lz85cfcra69mycka6x1hgaas6rv6ybbnikmrv846sx03n"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; - jmvcore = derive2 { name="jmvcore"; version="0.8.5"; sha256="0w1d18qrb8aimkzv7imnj9yfdmz7ppdvaiadsaprackch16s91kx"; depends=[base64enc R6 rjson]; }; + jmvcore = derive2 { name="jmvcore"; version="0.9.1"; sha256="01qv3m1vsabydlkshmqrg15y8nnrzkg49pq2ryxi3r6jw486qq1s"; depends=[base64enc R6 rjson stringi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; - joineR = derive2 { name="joineR"; version="1.2.3"; sha256="0cg7bfn0hb7ayx2s7myja5qzdvsbzyk8fbb1x5z0fp21gyrpfz18"; depends=[lattice MASS nlme statmod survival]; }; - joineRML = derive2 { name="joineRML"; version="0.4.1"; sha256="08zl6wv6yvk2cgp6ln2i9ziip0mjr4jrfpb1y75ln5wi00dbna3x"; depends=[cobs doParallel foreach ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival]; }; + joineR = derive2 { name="joineR"; version="1.2.4"; sha256="05wr7gr3mnsfj8a1m5v1b71gh3fc4pyhj6rqapls7iwrkywbf1b6"; depends=[lattice MASS nlme statmod survival]; }; + joineRML = derive2 { name="joineRML"; version="0.4.2"; sha256="06a7iicq3fngsmmi8qcz2fdzdzvym5s70s3aaqlzxnl4sj9km3g2"; depends=[cobs doParallel foreach ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival]; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.1"; sha256="0d9wwb3v43v30xjy67j366mhwixzz79bm67j01fqmcdsnmn3qpjn"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm nlme statmod survival]; }; - joint_Cox = derive2 { name="joint.Cox"; version="2.14"; sha256="0k9v1v4zbv0952zyp7xv5gkmnihfswpsqzp684f9y6n6xcg3v8fx"; depends=[survival]; }; + joint_Cox = derive2 { name="joint.Cox"; version="2.15"; sha256="1lcli1p1qv0ws1zqs845wb2swhm5vvbixsxs8yzihc5r7igyalg7"; depends=[survival]; }; jointDiag = derive2 { name="jointDiag"; version="0.3"; sha256="0pra70jcnkqkzrxz5vc6lzi637rp5w8n9wbv9ix718vnd0j3fm3n"; depends=[]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; jointseg = derive2 { name="jointseg"; version="1.0.1"; sha256="0wa531b5shrxhnzflfjqn2wypfb565qc2c8wngysgrgyj1kjq1pl"; depends=[acnr DNAcopy matrixStats]; }; - jomo = derive2 { name="jomo"; version="2.6-1"; sha256="1pcac6kbag4as28l557h702kc78mr0iz4m4rkhcx602l7dch8gd8"; depends=[lme4 survival]; }; + jomo = derive2 { name="jomo"; version="2.6-2"; sha256="0zyqwa2y08asj9xqwnngh6da1b9cqcx8pzc9cxwrmgnxd5nnsjb7"; depends=[lme4 survival]; }; jose = derive2 { name="jose"; version="0.2"; sha256="0vgmr5kmps6yk10bbzrxz2d3y7jk0w1rxpm9gx510kpnqbj325xz"; depends=[jsonlite openssl]; }; jpeg = derive2 { name="jpeg"; version="0.1-8"; sha256="05hawv5qcb82ljc1l2nchx1wah8mq2k2kfkhpzyww554ngzbwcnh"; depends=[]; }; - jpmesh = derive2 { name="jpmesh"; version="1.1.0"; sha256="01f0020ghl1f5fsri54gni15b36fg9vkr4xj43vy881sv11c5yr8"; depends=[dplyr leaflet miniUI purrr rlang sf shiny tibble tidyr units]; }; - jpndistrict = derive2 { name="jpndistrict"; version="0.3.0"; sha256="0vnawpkrkhv0vjvw49ldn86qy07pqsdw7mmq13h3l4qw5jmfsd9i"; depends=[dplyr jpmesh leaflet magrittr miniUI purrr readr rlang sf shiny stringi tibble tidyr]; }; + jpmesh = derive2 { name="jpmesh"; version="1.1.1"; sha256="0smfv7wh0441aqx0c0km0kr54lsvqixn2chqvqn5sd3758k5id95"; depends=[leaflet magrittr miniUI purrr rlang sf shiny tibble units]; }; + jpndistrict = derive2 { name="jpndistrict"; version="0.3.2"; sha256="0n935zwxjjnl1w0xd790gm22pdm8ng48x79iazfkjzj8dpwymdsg"; depends=[dplyr jpmesh leaflet magrittr miniUI purrr rlang sf shiny tibble tidyr]; }; jqr = derive2 { name="jqr"; version="1.0.0"; sha256="1jdr3wb1fd2zjmmdicqhskgk7xbn5y6998fi9szj86p8smfckl74"; depends=[lazyeval magrittr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; - jrvFinance = derive2 { name="jrvFinance"; version="1.03"; sha256="16mki26ns593xn1p1la2ihkddlwvzwdvjr3h2vz71bq5db11iffq"; depends=[]; }; + jrvFinance = derive2 { name="jrvFinance"; version="1.4.0"; sha256="09gr8w3y0cjlwjhr72ml05y22m868hnvxwa3mwxdcvfb7nb1dmxz"; depends=[]; }; js = derive2 { name="js"; version="1.1"; sha256="1xsdr14k4djcd1nqybvfzhviics4igsj8yz3r0j2nqhin2wjynlf"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.0.1"; sha256="0n754illyw29bprll676k9qm5vk5h8qss6gb8lls57kdzj51x2jz"; depends=[data_table htmlwidgets jsonlite]; }; - jsonld = derive2 { name="jsonld"; version="1.2"; sha256="1y4574ai4m31x4yjx5bp9i8wfgcgjgfr8jn5nn0x6qzlnjg58gyz"; depends=[curl jsonlite V8]; }; + jsonld = derive2 { name="jsonld"; version="2.0"; sha256="0mplsx2fq7pvxli1rd851cqhkaxk3y93aa46x57yf4z5rgjy34vm"; depends=[curl jsonlite V8]; }; jsonlite = derive2 { name="jsonlite"; version="1.5"; sha256="00lfg464jhf7k01bal9pcjvbdf5cxk6xi2h46hccp1x3h883g434"; depends=[]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; }; - jsr223 = derive2 { name="jsr223"; version="0.3.1"; sha256="030dp51fh9b7r4f7ad9drln73m3mhg2zh5fh053d65hzyszrqyqg"; depends=[curl jdx R6 rJava]; }; + jsr223 = derive2 { name="jsr223"; version="0.3.2"; sha256="00i90b37811sva8f9bd50xxvjcn7rag9hq5ya953v6whm370r737"; depends=[curl jdx R6 rJava]; }; jtGWAS = derive2 { name="jtGWAS"; version="1.5.1"; sha256="06cgsncgrqslxcc7s0lb3zwa85bhzkmjzz3f04716xpzwa186vxq"; depends=[Rcpp]; }; - jtools = derive2 { name="jtools"; version="0.9.4"; sha256="0vljw3n1ykvf3f2ydar9rb24cgiqljh195g2jc4dx77zy1kcfh4d"; depends=[ggplot2]; }; + jtools = derive2 { name="jtools"; version="1.0.0"; sha256="0w0yw0pl2arwx4d5w83d73y7cq9papqkdg6sfk9qj1whgcd28chv"; depends=[cli crayon ggplot2]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; jug = derive2 { name="jug"; version="0.1.7"; sha256="01m6hyr26f6zih49pz2bmmr8ypdl1qiz0wv3padcy68kaccf44a4"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; junctions = derive2 { name="junctions"; version="1.0.1"; sha256="1mfzhizfzpsrlc23kdi658a1svw4p3wh1la7zpf5fk2bbksw0v97"; depends=[Rcpp]; }; junr = derive2 { name="junr"; version="0.1.3"; sha256="0wcglpziyi6z4n7w70srziljba3jkb27iqxbxz4kk6774c7valbf"; depends=[httr jsonlite]; }; jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; - jwutil = derive2 { name="jwutil"; version="1.1.1"; sha256="114vph86722v89iwyla7skl06cv87ymfy6nmca5iyxwx1z78zddz"; depends=[checkmate Rcpp]; }; - kSamples = derive2 { name="kSamples"; version="1.2-7"; sha256="0f19rjngk0lg6s8c6h5l55qpxp8sl4vxj3kpi05cizzncny9b9bj"; depends=[SuppDists]; }; - kableExtra = derive2 { name="kableExtra"; version="0.8.0"; sha256="01m2h8ms83h5zmy9rys0dal9y77fk7bk1f3k1l2vsg2krb5wxagv"; depends=[htmltools knitr magrittr readr rmarkdown rstudioapi rvest scales stringr viridisLite xml2]; }; + jwutil = derive2 { name="jwutil"; version="1.2.1"; sha256="1n9q2p167cmp134p8qpknfg4avi4nzxqmazyr1gs63sk5x51yk48"; depends=[Rcpp testthat]; }; + kSamples = derive2 { name="kSamples"; version="1.2-8"; sha256="15d5q5vpp4wx5rk5kjxjdxpwc8mkq5sbdz8gi07iscrvhzb5rzfr"; depends=[SuppDists]; }; + kableExtra = derive2 { name="kableExtra"; version="0.9.0"; sha256="07232lg3nzg7vqpn61v3knmsy943gap92bqhdxm28k06vj9aqgbf"; depends=[htmltools knitr magrittr readr rmarkdown rstudioapi rvest scales stringr viridisLite xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; kamila = derive2 { name="kamila"; version="0.1.1.2"; sha256="0mcray8byifjddsmwzmcpmw3zpm1y8q3nfrgpgacb36rwprqkj6z"; depends=[abind gtools KernSmooth mclust plyr Rcpp]; }; kangar00 = derive2 { name="kangar00"; version="1.1"; sha256="1rm3mjghgfq8fliha6flqvcb6m4xag1697c0q5smg515453l0s0p"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; @@ -7684,31 +7782,33 @@ in with self; { karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; - kde1d = derive2 { name="kde1d"; version="0.1.2"; sha256="0n28xkkhl9mfd0bcgfv181j9lqk0aiim2irnwn654fpz0y6rwhnh"; depends=[BH cctools qrng Rcpp RcppEigen]; }; + kde1d = derive2 { name="kde1d"; version="0.2.1"; sha256="14zblm0yj806an9p463hfc9xnrdkh3x8bfxld6a9cjg513kij9ib"; depends=[BH cctools qrng Rcpp RcppEigen]; }; kdecopula = derive2 { name="kdecopula"; version="0.9.2"; sha256="0g5c12wm3byd4chd8i9mxv599gsf4ip4qghx83j3mmhsmn05zf4y"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; kdensity = derive2 { name="kdensity"; version="1.0.0"; sha256="0di027xjcd8xllkbygmkmpvp9wchh3haf15vrw7sjck3yvh68k5f"; depends=[assertthat EQL knitr rmarkdown]; }; kdetrees = derive2 { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; }; kdevine = derive2 { name="kdevine"; version="0.4.1"; sha256="0ci51dn7jhz9swlywiqj3inkk4329argm63lhkyvcbj2kd2rjay1"; depends=[cctools doParallel foreach kdecopula KernSmooth MASS qrng Rcpp VineCopula]; }; - kdtools = derive2 { name="kdtools"; version="0.3.0"; sha256="1q22h5cs5p6nvmxrnq0pdfs8aq2aghash9y387ch0g6cm1n5hzj4"; depends=[BH Rcpp strider]; }; + kdist = derive2 { name="kdist"; version="0.2"; sha256="18q7njvsb9sbm412c6ms4b4nxg768z9qahws5rnin06gvb25nfcx"; depends=[]; }; + kdtools = derive2 { name="kdtools"; version="0.3.1"; sha256="1c04rfnnbkh6d8435hjgnq3q42rsfyvf36ypxjsax39spynip457"; depends=[BH Rcpp strider]; }; kedd = derive2 { name="kedd"; version="1.0.3"; sha256="17rwz3yia95xccbxwn43wr6c9b3062094yfahnnnk3wfijyhlxiq"; depends=[]; }; keep = derive2 { name="keep"; version="1.0"; sha256="12803hhrs9v94rv6qaihk1f1ls7lx4cy2pa30v4p1r2z9afx9bjf"; depends=[]; }; kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; kelvin = derive2 { name="kelvin"; version="2.0-0"; sha256="04xdgpmysksm79m3vqmb4zra3pq09nv99w4fbdla1lmy7z8pkdrk"; depends=[Bessel]; }; + kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.2"; sha256="1h02394gq8cmz7bw6k2yg4qjzmns7i6bzafkdw3x9ycf4d9l6p80"; depends=[dplyr EnvStats ggplot2 nleqslv tibble tidyr]; }; kequate = derive2 { name="kequate"; version="1.6.1"; sha256="1rjya1rnlfk2ziiwhkgshlyk3g0388591q3q01a3vgmgsb3cpxl6"; depends=[equateIRT ltm mirt]; }; - keras = derive2 { name="keras"; version="2.1.5"; sha256="0l6hs9bawrnjansmka082cqvcf4h5lnrfjgp9rivg8k89nqaknfq"; depends=[magrittr R6 reticulate tensorflow tfruns zeallot]; }; + keras = derive2 { name="keras"; version="2.1.6"; sha256="1xgxf9xg8b7dpnbc5dnysd4s2n74877s16f353hrbybf6m768kik"; depends=[magrittr R6 reticulate tensorflow tfruns zeallot]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; - kerasformula = derive2 { name="kerasformula"; version="0.1.1"; sha256="0c19208y9v8a1w4p54z7yng5vvmb6h79fs0a20ij98ngys9afbwz"; depends=[dplyr keras Matrix]; }; + kerasformula = derive2 { name="kerasformula"; version="1.0.0"; sha256="1hhzrrg4ryajzlih8wj2j0z3wb0ksi5zycaf9njvbd0jvfxxbzdy"; depends=[dplyr keras Matrix]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; kergp = derive2 { name="kergp"; version="0.2.0"; sha256="1xamj19v84m1f9ls8ac8xbm6airyjf96i1l48yy4l2rvjdmx6m9l"; depends=[doParallel MASS numDeriv Rcpp testthat]; }; kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="2.0.2"; sha256="04bdggxvggmppp289n2zw6ijdm7y05gws6z7bp6fr8n1zsxy2w3c"; depends=[caret DiceKriging DiceOptim GA GenSA glmnet globalOptTests lhs matrixStats mvtnorm Rcpp RcppEigen]; }; - kerndwd = derive2 { name="kerndwd"; version="2.0.1"; sha256="1grinlqjjsxw1x152f9y38lhijh74zc831ddc0lk2niq2rvzszdw"; depends=[]; }; + kerndwd = derive2 { name="kerndwd"; version="2.0.2"; sha256="0nf5hyb274gn02n4lygwryv1jaqff77i040bd8gs1xykgvy6jxny"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; - kernelboot = derive2 { name="kernelboot"; version="0.1.4"; sha256="1d1l9sbnlyx5a88qmd6q2zxlkr6dykcwlkk648yqmmfvqmq4xjmj"; depends=[future future_apply Rcpp]; }; - kernlab = derive2 { name="kernlab"; version="0.9-25"; sha256="0qnaq9x3j2xc6jrmmd98wc6hkzch487s4p3a9lnc00xvahkhgpmr"; depends=[]; }; + kernelboot = derive2 { name="kernelboot"; version="0.1.5"; sha256="0m31akhya7390lbkw0cjxcrzw28njbz4smd35m93aarb2lgpcj4k"; depends=[future future_apply Rcpp]; }; + kernlab = derive2 { name="kernlab"; version="0.9-26"; sha256="0xv0slf3ggw3sswsi34416lb1g3h1pqkrr2h7r1n1kvgii3l0jcm"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.1"; sha256="1dxw1qk5gx7g05kgsbh5436r7mbv77631zjs0c4ibpscaw77g475"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.3"; sha256="0h3xv76dxch8kv4z7cgx60iaikk6906n75c4kc1mccpw0jvyxrvb"; depends=[MASS mvtnorm]; }; kexpmv = derive2 { name="kexpmv"; version="0.0.3"; sha256="1nx2bpyc06vlr78nhig4zaaygphjp4wqsz9jzhs4qx8wy3kh7rmy"; depends=[Rcpp SparseM]; }; - keyholder = derive2 { name="keyholder"; version="0.1.1"; sha256="1dp326vayjzjpfhd2ajrpqjvbn6vvqa7iw9mdhblprz4cvv65g30"; depends=[dplyr rlang]; }; + keyholder = derive2 { name="keyholder"; version="0.1.2"; sha256="157k39acn8732g0ha9m402v5hhqnc34qpghvhg430dga2r5g3cxh"; depends=[dplyr rlang]; }; keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; keypress = derive2 { name="keypress"; version="1.1.1"; sha256="0w8hcxxx47zyz2cbz2s8va2rfb6s2ziw9ck1slq9kh3aqsx3i9g0"; depends=[]; }; keyring = derive2 { name="keyring"; version="1.0.0"; sha256="0asa62cgs08k0g0yhvsxr2k8rfxy3hqkd4hrv0396394v13b08w5"; depends=[assertthat getPass openssl R6]; }; @@ -7717,6 +7817,7 @@ in with self; { kfigr = derive2 { name="kfigr"; version="1.2"; sha256="0hmfh4a95883p1a63lnziw8l9f2g0fn0xzxzh36x9qd9nm7ypmkw"; depends=[knitr]; }; kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; }; + kidney_epi = derive2 { name="kidney.epi"; version="1.0.0"; sha256="1n264l2snbmx72hp67gzkwwzkmivi1f4nddh3zhxvy028y47w643"; depends=[]; }; kimisc = derive2 { name="kimisc"; version="0.4"; sha256="0nbjspbq9akhmamfdn192p5b6ki7xqhp422ih6v77xsnrhl5m24z"; depends=[memoise plyr pryr]; }; kin_cohort = derive2 { name="kin.cohort"; version="0.7"; sha256="0wijsjz0piz5j9rm2nr3d5dfpiyba740mbfbkmfll9pz72s58wz8"; depends=[survival]; }; kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; }; @@ -7732,12 +7833,11 @@ in with self; { klausuR = derive2 { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; }; klin = derive2 { name="klin"; version="2007-02-05"; sha256="0j0hr4bppzk754a66q5z42h7jzfavqpxgl7y266804aginfqm1ax"; depends=[Matrix]; }; km_ci = derive2 { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v"; depends=[survival]; }; - kmc = derive2 { name="kmc"; version="0.2-2"; sha256="0ldyhlqdrbygvhpy4b9xp52zjvjmb0gaph0v9fhla707f63i21m5"; depends=[emplik Rcpp rootSolve]; }; kmconfband = derive2 { name="kmconfband"; version="0.1"; sha256="10n5w8k57faqcclwshs4m66i2i5b70i6f3xq5nqlgsi2ldkysbc9"; depends=[survival]; }; kmcudaR = derive2 { name="kmcudaR"; version="1.0.0"; sha256="1adixf4nsgnk8rgvcv37aznh8gxrfwn19ihh3c6siss51hlmhln2"; depends=[Rcpp RcppEigen]; }; kmed = derive2 { name="kmed"; version="0.0.1"; sha256="0vcks4n0dpfd5cl5b8mhvhw6r2f3y12jn3d3j3dkj2grxmb9lh4c"; depends=[ggplot2]; }; - kmer = derive2 { name="kmer"; version="1.0.2"; sha256="117ggn2i4yy0l7vvrf9miy4x63n9d34rjksd3dd3ama2alp4s95l"; depends=[openssl phylogram Rcpp]; }; - kmi = derive2 { name="kmi"; version="0.5.3"; sha256="0b3nibvi0skrx3mjfzypqmdqx8s9zkn11f0ljscqpjr28idx4hr0"; depends=[mitools survival]; }; + kmer = derive2 { name="kmer"; version="1.1.0"; sha256="0c96rz75qggqfb0zccn0v92jx9ws2nlw8pk6j5jghllcgm99qbdc"; depends=[openssl phylogram Rcpp]; }; + kmi = derive2 { name="kmi"; version="0.5.4"; sha256="07h4gn69r4zxm00alj74fd0qdyp7g9x38gpi1v7yzy806wlg93fr"; depends=[mitools survival]; }; kml = derive2 { name="kml"; version="2.4.1"; sha256="1my9gcripiqc6iphycjr3srj8qxy05yvd0648vblygrx2qym5hy2"; depends=[clv longitudinalData]; }; kml3d = derive2 { name="kml3d"; version="2.4.2"; sha256="1a3hqyhrsh12l1j1xlz4zy88impw3biz6w2qc80r11m549h0m6s9"; depends=[clv kml longitudinalData misc3d rgl]; }; kmlShape = derive2 { name="kmlShape"; version="0.9.5"; sha256="1p35ihjq84jnzq78yksdblc0c1qcn13f8n4khddsxcqvk3a44xb1"; depends=[class kml lattice longitudinalData]; }; @@ -7746,23 +7846,24 @@ in with self; { knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.8"; sha256="07h8d5cp52qcm0912c55j59k2p3c7s4af87qa7a9hafhgimnsdiv"; depends=[digest httr RefManageR]; }; knitr = derive2 { name="knitr"; version="1.20"; sha256="1408dm25cxahk2clff8hlajaqdj5v1gs40nm3q6rf0ghd82hj93v"; depends=[evaluate highr markdown stringr yaml]; }; - knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.1"; sha256="089147g7nqp99rwdxxsfmklsrwc8aia09sr8ndmrc335r33v6r6p"; depends=[knitr markdown rmarkdown]; }; + knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knnGarden = derive2 { name="knnGarden"; version="1.0.1"; sha256="1gmhgr42l6pvc6pzlq5khrlh080795b0v1l5xf956g2ckgk5r8m1"; depends=[cluster]; }; knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knncat = derive2 { name="knncat"; version="1.2.2"; sha256="1d392910y3yy46j8my1a7m0xkij2rc6vwq5fg22qk00vqli8drz2"; depends=[]; }; + knnp = derive2 { name="knnp"; version="1.0.0"; sha256="038bl834zjmwdhfh5skhsjk2jqizx285g1w4y7ji9h0h03akn5nd"; depends=[doParallel foreach forecast parallelDist]; }; knockoff = derive2 { name="knockoff"; version="0.3.0"; sha256="0irqbidp00rh07xsfyyv5d3ksa4fn9vv49rsy8ah2gb9y41iy046"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; knor = derive2 { name="knor"; version="0.0-5"; sha256="19wjrcmfam1ck5vbidksmy923d5p5llikjxn0v248vzfz96ia1yc"; depends=[Rcpp]; }; knotR = derive2 { name="knotR"; version="1.0-2"; sha256="0kd1b9wibpwyaanz9ny61qgfvcg4d3rzpy05sfshlpp0b1y8d3xj"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.1"; sha256="0d78mgmz2yhfbf4m5jaa28aazaw2wf9vf1vxl53wrnpy0hxw329y"; depends=[base64enc dplyr httr jsonlite lazyeval lubridate purrr rstudioapi stringr tibble]; }; koRpus = derive2 { name="koRpus"; version="0.10-2"; sha256="1ykaky10zkj76w44fhk6kb6dqz1pgncmdnz4r2amcm08a8h96gsr"; depends=[data_table]; }; koRpus_lang_en = derive2 { name="koRpus.lang.en"; version="0.1-2"; sha256="0v3cjzcpa24n479xi2lkj3yhjrgbd14iq9rz1bvywbj3shixs0bn"; depends=[koRpus sylly_en]; }; - kofdata = derive2 { name="kofdata"; version="0.1.3"; sha256="135fkfciya8d215iv0ir7kmd01w7rlzqfcif5jz918skrv2p9mcl"; depends=[httr jsonlite xts zoo]; }; + kofdata = derive2 { name="kofdata"; version="0.1.3.1"; sha256="1sys4ymh0ja2zb14k6hq455563np7n8jzmgakkjdghfi38lxndam"; depends=[httr jsonlite xts zoo]; }; kofnGA = derive2 { name="kofnGA"; version="1.2"; sha256="1j4gx6pkmasgbgcdlg6i5nzfrmim61c2hw34k5zfmwfbkrsgb575"; depends=[]; }; - kohonen = derive2 { name="kohonen"; version="3.0.4"; sha256="1aq98qbmbzsdyimhn28qiyqfrwkwq70qmm5yhx0rvhjq53bn9622"; depends=[MASS Rcpp]; }; + kohonen = derive2 { name="kohonen"; version="3.0.5"; sha256="110ckinwzgv8b6g1cj0k0vva19abi44psf9vmqifs3450v90bq8z"; depends=[MASS Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="0.4.2"; sha256="1nwydfyr9waa5h8h8nrmwxy0jx7i4893g5khfv6b4g09z6g5cyly"; depends=[curl dplyr glue httr purrr rlang sf shiny stringr tibble xml2]; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; - komadown = derive2 { name="komadown"; version="0.1.0"; sha256="08rg2qz4dmxl4xi0d7wdl2xgdmsc29fdc0yi40yddzrbpj4vs2z4"; depends=[bookdown knitr rmarkdown]; }; + komadown = derive2 { name="komadown"; version="0.2.0"; sha256="0mw1bcrg10yy1y844lpik70979420h0nsar48v5p3qk783pymbdp"; depends=[bookdown rmarkdown]; }; komaletter = derive2 { name="komaletter"; version="0.2.0"; sha256="17xkc22ci2gqypcfs1yhyzfmpsh8bmjbw6yms27cbqg4m4jdgm9v"; depends=[rmarkdown]; }; konfound = derive2 { name="konfound"; version="0.1.0"; sha256="1w85gsms061d5hik3bc7x5gc7cp6c9h8l8q8q60isj1r0n60a81s"; depends=[broom dplyr ggplot2 margins pbkrtest purrr rlang tidyr]; }; kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; @@ -7772,7 +7873,7 @@ in with self; { kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; krm = derive2 { name="krm"; version="2018.1-24"; sha256="0qysv61vjdz8674hn6mk0913dkm2bfkqmr7cybls9z9h4i068vdk"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.11.0"; sha256="1wbw6zqsm7n65hbxiabpap2nbqq7795ir2r3fd7rw125hibj73k4"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv misc3d multicool mvtnorm OceanView rgl]; }; + ks = derive2 { name="ks"; version="1.11.2"; sha256="0q99b6jv61cni5fgxvygbg8hs4fyhdmbgdzwgny7mrp1jr84izcx"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm]; }; kscons = derive2 { name="kscons"; version="0.7.0"; sha256="1i4dp56y9swl5s6cipqlm5i5fknz2v0yz5g930cl5i8kx91rxwrp"; depends=[]; }; kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; ksrlive = derive2 { name="ksrlive"; version="1.0"; sha256="1zd3ggzgjks0jay69s5m7ihbd7v7zha6ssj2m9ahnyp00ghpk83j"; depends=[tightClust]; }; @@ -7781,8 +7882,8 @@ in with self; { ktsolve = derive2 { name="ktsolve"; version="1.1"; sha256="0b5myr093v3qaj9gzbw1w728i5ij418whxxpicj51w657dcy647k"; depends=[]; }; ktspair = derive2 { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[Biobase]; }; kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; - kutils = derive2 { name="kutils"; version="1.39"; sha256="05744f8bz8mbxcqhf50rxjlknwar4ci3g0nmcx5jggwczqqmn2pq"; depends=[foreign lavaan openxlsx plyr RUnit xtable]; }; - kvh = derive2 { name="kvh"; version="1.1"; sha256="1dvq7wbpx1hpjshvsihivd8q8hyhji047gifxc6cjnv778r4irb1"; depends=[Rcpp]; }; + kutils = derive2 { name="kutils"; version="1.45"; sha256="0qx40d5nk8q0kv09l73bcn7dbch89b9zi8yp75v39vcy4qxdnc2b"; depends=[foreign lavaan openxlsx plyr RUnit xtable]; }; + kvh = derive2 { name="kvh"; version="1.3"; sha256="0dhdvka7sdh7qcq5cz5xsv8dbxr1lr4n7wf033smsz4nvwgjixr3"; depends=[Rcpp]; }; kwb_hantush = derive2 { name="kwb.hantush"; version="0.2.1"; sha256="0rjnhhzvjhhl0r2ixz9vkgnqkrnnk772253zy7xkpadj7ws69jsf"; depends=[hydroGOF lattice]; }; kyotil = derive2 { name="kyotil"; version="2017.12-27"; sha256="0xd64xg3nj0pj0ziycq4ndpl8kwxfng96ag8zmqzzxk85zw2vyq3"; depends=[]; }; kza = derive2 { name="kza"; version="4.0.0"; sha256="0yfn6ijbskdkcgbgk4fwhgiiy34cw9k9vy1psi779mqd9kyjf56j"; depends=[]; }; @@ -7794,14 +7895,15 @@ in with self; { l2boost = derive2 { name="l2boost"; version="1.0.1"; sha256="0f2gapzpvjnr8n1jgn60jpmcas4s8nk2q8q4k5v4ypwvpfqp7kk1"; depends=[MASS]; }; laGP = derive2 { name="laGP"; version="1.5-1"; sha256="0sqzvz78p50afp892p7ghy4fmy9p3a2ik51bzzwrx6r96ax7w971"; depends=[tgp]; }; labdsv = derive2 { name="labdsv"; version="1.8-0"; sha256="0rbf7cswnj534jdi5hfaai12nbxj6l96f02c73ynraqvdqxb1bnz"; depends=[cluster MASS mgcv]; }; - label_switching = derive2 { name="label.switching"; version="1.6"; sha256="0k6f31gwcjfncsgd5cm9zygplif2wr8zjqrw4gmrnxcgp2z58a9w"; depends=[combinat lpSolve]; }; + label_switching = derive2 { name="label.switching"; version="1.7"; sha256="1p4cgqf79zppvzrhh5gcxnm7f8qj03fzfmjx43mjhsr1vqig4c78"; depends=[combinat lpSolve]; }; labelVector = derive2 { name="labelVector"; version="0.0.1"; sha256="0iwk8p3m2g6732q2pilwr3wlaiys15khd54r0vxsp2irlw77lzrg"; depends=[]; }; labeledLoop = derive2 { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; }; - labelled = derive2 { name="labelled"; version="1.0.1"; sha256="18mz4qraxalq50rzmblsvavx4isb4194rj4iqab09qzh8ib1qzwv"; depends=[haven]; }; + labelled = derive2 { name="labelled"; version="1.1.0"; sha256="0w1zc4w2lkhyldwqyc0drfdn251kjz94jv9p0sn6b034vcifq7ia"; depends=[dplyr haven]; }; labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; }; labstatR = derive2 { name="labstatR"; version="1.0.9"; sha256="1ysk23dwan1lsfwnf9v86yqyzc8wsgzmy18ycz34s4d9biq6y1zd"; depends=[]; }; labstats = derive2 { name="labstats"; version="1.0.1"; sha256="1780slp9l1rqwr5ika6hv606jzbaa3g1ywzkjkd3ff2gb0cby3ni"; depends=[]; }; + lacm = derive2 { name="lacm"; version="0.0.3"; sha256="0qhvffiw2bcpnv6l4y4h12ss59yc2j0hwsg2nr4a7w4nh6yk9fwc"; depends=[numDeriv statmod]; }; laeken = derive2 { name="laeken"; version="0.4.6"; sha256="1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"; depends=[boot MASS]; }; laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; lagged = derive2 { name="lagged"; version="0.1-1"; sha256="062a9hrnp2bsahsdasml0wzqpapyslfiwy9q2mvwqsl6j2pqkk0s"; depends=[]; }; @@ -7809,7 +7911,7 @@ in with self; { lakemorpho = derive2 { name="lakemorpho"; version="1.1.1"; sha256="0asrp9rvyi5ykxw922qx25rgxvyc9mh4sc7qkbpwzqw8xvgpad2z"; depends=[cluster geosphere raster rgdal rgeos sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; lamW = derive2 { name="lamW"; version="1.3.0"; sha256="00qa1sxyqb2r7f9yidg43cq2v1285f45xpm3z928jpi424mpg0fc"; depends=[Rcpp RcppParallel]; }; - lambda_r = derive2 { name="lambda.r"; version="1.2"; sha256="0vql32np716dpd0kjn7s7wgawd02ysgp2a5il4kb19nlw661ii3x"; depends=[]; }; + lambda_r = derive2 { name="lambda.r"; version="1.2.3"; sha256="0cc6pszs6yccn0hgjpyn9gspv9aiva9d91ba0640i5m0l5xy7n0c"; depends=[formatR]; }; lambda_tools = derive2 { name="lambda.tools"; version="1.0.9"; sha256="1wslxxh6rxny3n06y16dqwpczi3k42vrq4pbwwshl6kzhl56r45b"; depends=[lambda_r]; }; landest = derive2 { name="landest"; version="1.0"; sha256="1lp5sfqk0n7i23fmwjgzsabml1fsji1h9xq5khxzaz1bzqv1s08g"; depends=[survival]; }; landpred = derive2 { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; }; @@ -7820,31 +7922,30 @@ in with self; { landsepi = derive2 { name="landsepi"; version="0.0.4"; sha256="0b162vdgrd1v93bm5dc5r4nzpcm3cq5iy8v3f2axpx1fk378aaar"; depends=[fields maptools MASS Matrix Rcpp rgdal rgeos sf sp splancs]; }; languageR = derive2 { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.3"; sha256="1sh3k8xw88pm93wmpy1qi44i8pv5b5g6ajzas36bdi1bqm8cqzax"; depends=[attempt curl httr rjson]; }; - languageserver = derive2 { name="languageserver"; version="0.1.0"; sha256="05ph152xrw8qmnb1mwqsq2qx11d6f4g57v9qp1mxi6y11wl21rxq"; depends=[callr jsonlite lintr R6 repr stringr]; }; + languageserver = derive2 { name="languageserver"; version="0.2.3"; sha256="1rjdmnfgf6nj03ddsak56y6gii8kj2vayri2l26hg1n0ap99z1bs"; depends=[callr jsonlite lintr R6 repr stringr styler]; }; lans2r = derive2 { name="lans2r"; version="1.0.5"; sha256="1m3hz85gl9m4vafdy7mj3z560d11mdwlwvnzy8n7d1cjqryn7a2b"; depends=[dplyr ggplot2 lazyeval R_matlab reshape2 tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; - largeVis = derive2 { name="largeVis"; version="0.2.1.1"; sha256="14jgfykvawcqmb94zwpss246ljbwf4qdgmpwwfsnplrxs7agycb5"; depends=[ggplot2 Matrix Rcpp RcppArmadillo RcppProgress testthat]; }; lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; lasso2 = derive2 { name="lasso2"; version="1.2-19"; sha256="0zkwjsd42a6z4gylq9xbs4z8n1v7ncwvssjnn3h4yz1icjfzzlvk"; depends=[]; }; lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; - latdiag = derive2 { name="latdiag"; version="0.2-3"; sha256="0i2mqk3ldg5kf4d8sfljgjsqbdin7v69anmc2rrxgy28bmvykf9d"; depends=[]; }; + latdiag = derive2 { name="latdiag"; version="0.2-4"; sha256="051chvky3hlfr4hwm9qickl6aaxwnxa88zksmzczqfspby771hq6"; depends=[]; }; latentnet = derive2 { name="latentnet"; version="2.8.0"; sha256="05r7hzj5i7rgpxl798lwi2m62l1qkl5zdza0q2awcd5ydkgj34hp"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; - later = derive2 { name="later"; version="0.7.1"; sha256="0z9jymmclkq9zcg1fd8p6gsnm5z1sn3n9pfz3bs03qjrkbizgrvz"; depends=[BH Rcpp rlang]; }; + later = derive2 { name="later"; version="0.7.3"; sha256="04j2phymxgkk4hv9pfa5w3s98w5d7fvm11blrdhxmray4n618msw"; depends=[BH Rcpp rlang]; }; latex2exp = derive2 { name="latex2exp"; version="0.4.0"; sha256="12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"; depends=[magrittr stringr]; }; latexpdf = derive2 { name="latexpdf"; version="0.1.3"; sha256="1zsdz3nvhifxbhp69nigq1crgm39g6gmc8xl5akp5jdidmzyrh84"; depends=[]; }; lattice = derive2 { name="lattice"; version="0.20-35"; sha256="0pcnmaz3lr62ly0dcy5hnnqxshc4yqd43hrvlz3almgc9l7sna88"; depends=[]; }; latticeDensity = derive2 { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[spam spatstat spdep splancs]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-28"; sha256="1hkyqsa7klk5glj9y1hg3rxr5qilqw8h0017zc4c3nps7lr9a1kq"; depends=[lattice RColorBrewer]; }; - lava = derive2 { name="lava"; version="1.6.1"; sha256="11k9npmzp3nk2qx0h1dwwfc37j4ddd9y54bppxby0ffnb8qlpw1k"; depends=[numDeriv SQUAREM survival]; }; + lava = derive2 { name="lava"; version="1.6.2"; sha256="1r47pps39cgvxhg1s0bqknf4jl91pbb0c76q5icxivhwb172fqcm"; depends=[numDeriv SQUAREM survival]; }; lava_tobit = derive2 { name="lava.tobit"; version="0.5"; sha256="15dlcjgnvrpdxymcwf4rvk72ssr650dy1ayp50zlrp2va0p6h4kw"; depends=[lava mets mvtnorm survival]; }; lavaSearch2 = derive2 { name="lavaSearch2"; version="1.3.3"; sha256="08h9nfbjbq6l5drmq07js2b6ylv29wfrddqdlpsnysi99sj8i8aq"; depends=[ggplot2 lava MASS Matrix multcomp mvtnorm nlme reshape2 sandwich]; }; - lavaan = derive2 { name="lavaan"; version="0.5-23.1097"; sha256="11wxzjg09q5wzvbp1lhi9sjnp4rrjpdxnmq3zf8npx08iwkw79ws"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; + lavaan = derive2 { name="lavaan"; version="0.6-1"; sha256="0k0mm66i5xfb06rc7b6is16nn7k2limas5mhlr9d5nwbqz87g4i2"; depends=[MASS mnormt numDeriv pbivnorm]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; - lavaanPlot = derive2 { name="lavaanPlot"; version="0.3.0"; sha256="12j6r98p4ghcnk813s2z9r1mlwzkp6jyxjllk5nl554h5s5jg92i"; depends=[DiagrammeR lavaan]; }; + lavaanPlot = derive2 { name="lavaanPlot"; version="0.5.1"; sha256="01bx1snd3zhc8dmq0f407qhw2d00f6d38qpr791qc1mq5kr3d8qj"; depends=[DiagrammeR lavaan stringr]; }; lawn = derive2 { name="lawn"; version="0.4.2"; sha256="17nj88n5xzhjkwm0hi8g9h5a3nclvkq3k1pv3690ph14g4l9lgcj"; depends=[jsonlite magrittr V8]; }; lawstat = derive2 { name="lawstat"; version="3.2"; sha256="03ppzyx3x6vx1n2k5l8gl9j2q2mnqa1im5smxnrlncan7yzjy7sf"; depends=[Kendall mvtnorm VGAM]; }; lazy = derive2 { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; }; @@ -7860,27 +7961,25 @@ in with self; { lbreg = derive2 { name="lbreg"; version="1.2"; sha256="0wcw5w07fgmxwzmamf380l8vxw9fnxhbrhcwwfy6x87xby3bzr1b"; depends=[MASS]; }; lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; }; lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; - lcmm = derive2 { name="lcmm"; version="1.7.8"; sha256="180xfx842sic5qnfr0zh2h4345zkzlf123pdw4q6gd0mi5smwwc7"; depends=[survival]; }; + lcmm = derive2 { name="lcmm"; version="1.7.9"; sha256="15x8i7cvifbrb64cqjng0hvk6ajnla0yakj4pfd8d4s20nzivij4"; depends=[survival]; }; lcopula = derive2 { name="lcopula"; version="1.0"; sha256="07a9k5fp03s6jnjawg11j4458xrsrrqxv6kf3cs58ymv0j2s1qyd"; depends=[copula pcaPP Rcpp]; }; lctools = derive2 { name="lctools"; version="0.2-6"; sha256="06hhz0sjdrci1li03f09wij1qrl74sla2938fbkx72ffy0mdg310"; depends=[MASS pscl reshape weights]; }; lcyanalysis = derive2 { name="lcyanalysis"; version="1.0.3"; sha256="0nkqrm8r5iyvw2gbixvi0bnqx2wafg67cqz9mn99halzk9hpynl9"; depends=[quantmod TTR xts zoo]; }; lda = derive2 { name="lda"; version="1.4.2"; sha256="03r4h5kgr8mfy44p66mfj5bp4k00g8zh4a1mhn46jw14pkhs21jn"; depends=[]; }; ldamatch = derive2 { name="ldamatch"; version="1.0.1"; sha256="1dmmjw7h0rrgwga7235bryzzvmx68gmkpy5v1pwvnkk4rxp8xamh"; depends=[car data_table entropy foreach gmp iterators iterpc kSamples MASS RUnit]; }; - ldat = derive2 { name="ldat"; version="0.1.0"; sha256="1ga96m1sl7khhwi41ab07k02ay4w8vzi5cl895h9kfavgbhqsf6m"; depends=[BH lvec]; }; + ldat = derive2 { name="ldat"; version="0.2.0"; sha256="04l544js7xzaywd2mj3kcz40gxn98primzmzd1ihk35lqmpd7h8y"; depends=[BH lvec Rcpp]; }; ldatuning = derive2 { name="ldatuning"; version="0.2.0"; sha256="18nm4hj7733c1cp03hyddnivhiiyv7ndnw9m6j3af019jjmvf215"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; ldbod = derive2 { name="ldbod"; version="0.1.2"; sha256="1ylzkswnhf4jnjx2ijasy49pj78ffx333za0bx2fnf3g85kicqiv"; depends=[mnormt RANN]; }; ldbounds = derive2 { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dryq3ww0dqxd0qf5xx1bs3w934sf99l46bhs"; depends=[lattice]; }; ldhmm = derive2 { name="ldhmm"; version="0.4.5"; sha256="1pax1hl0h07nc9d34pf0jqgpcxr7y7dpqcm2hlclrmsinhj9q8vi"; depends=[ecd ggplot2 moments optimx scales xts zoo]; }; - ldlasso = derive2 { name="ldlasso"; version="3.2"; sha256="0ij68zvgm8dfd2qwx6h6ygndac29qa0ddpf11z959v06n8jsnk11"; depends=[GenABEL quadprog]; }; ldr = derive2 { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; - ldstatsHD = derive2 { name="ldstatsHD"; version="1.0.1"; sha256="152dlphxxzllgf7al8k34qcfg6n8ajxqym62i61ahbbgjlcd0x9r"; depends=[camel cluster corpcor evd fExtremes huge igraph MASS Matrix qvalue RBGL robustbase VGAM]; }; leabRa = derive2 { name="leabRa"; version="0.1.0"; sha256="08yiwyfg9bp4i9w5yyw9p63wyvgj39kd64y3h21j2jmpw8zxncdq"; depends=[plyr R6]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; leafSTAR = derive2 { name="leafSTAR"; version="1.0"; sha256="16zfaj0v6dx6mhy6m126lxa6w0dzfw4acm83jlbrizaz52amhv6a"; depends=[]; }; - leaflet = derive2 { name="leaflet"; version="1.1.0"; sha256="05faikqdlbsj9lvl1lvhmagys71597jvgah8b9f1fqhgyj0bwx7l"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; - leaflet_esri = derive2 { name="leaflet.esri"; version="0.2"; sha256="18y3hzbn4apn209rww8hk4mkx5ix6b6z01ydr31d39bqlgg6n7zf"; depends=[htmltools htmlwidgets leaflet leaflet_extras magrittr shiny]; }; - leaflet_extras = derive2 { name="leaflet.extras"; version="0.2"; sha256="1baxcgcxizyf05w8gb5zjmvrsbrhpwvrxrblcv5vpy4vk73921v1"; depends=[htmltools htmlwidgets leaflet magrittr shiny stringr]; }; - leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.5.2"; sha256="028nw9nh4q3lkw9kr4lgs78wnm79ynkjx7f215ch42183nfzlypi"; depends=[htmltools leaflet]; }; + leaflet = derive2 { name="leaflet"; version="2.0.1"; sha256="01ngvwj2w0hlxz24x32ffwkcd5rrbm1w57mp7mlaapi3yfnxaxlq"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; + leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; + leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; + leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.5.4"; sha256="17lrchpry3in36jdkinsxs9lzqnx65xyk9g939knc8nmjw6z2j2r"; depends=[htmltools leaflet]; }; leafletCN = derive2 { name="leafletCN"; version="0.2.1"; sha256="1rg39n4bjacwss9nbdnz8y2zh8hxlc7a5ygndhjbmzajnbxfh09b"; depends=[htmltools jsonlite leaflet magrittr rgeos sp]; }; leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; }; leapp = derive2 { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; }; @@ -7888,29 +7987,30 @@ in with self; { learNN = derive2 { name="learNN"; version="0.2.0"; sha256="0q0j25vi7hrwaf38y10m24czf3rsvj937jvkz3ns12bd8srlflah"; depends=[]; }; learningCurve = derive2 { name="learningCurve"; version="1.1.2"; sha256="02dl5rlvwa8dvhknf4kdfg3aial54shnxrq7k2k8yj2dj0qh062c"; depends=[ggplot2 gridExtra scales tibble]; }; learningr = derive2 { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; }; - learnr = derive2 { name="learnr"; version="0.9.2"; sha256="1z04c1djg7ghsl7p9ypc6k5m7snahnmjy10xmrzqfayx1wkfkn9n"; depends=[evaluate htmltools htmlwidgets jsonlite knitr markdown rappdirs rmarkdown rprojroot shiny withr]; }; + learnr = derive2 { name="learnr"; version="0.9.2.1"; sha256="0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5"; depends=[evaluate htmltools htmlwidgets jsonlite knitr markdown rappdirs rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="0.0.2"; sha256="1k17dk8ahn1ifwid1hhx0k7fpgc62zg82y66bbf6nhd4dgdbbv2p"; depends=[]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; + leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; lefse = derive2 { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lemon = derive2 { name="lemon"; version="0.3.3"; sha256="0jxcyplr69a3rganqc02ry57xj7is7dylsh9kvsy6kwnji6bvdib"; depends=[ggplot2 gridExtra gtable knitr lattice]; }; + lemon = derive2 { name="lemon"; version="0.4.1"; sha256="16zr2xg72vxplrvsrrz2fp0akqs4am1k2ymk4mdn2yzzby41dn40"; depends=[ggplot2 gridExtra gtable knitr lattice plyr]; }; lero_lero = derive2 { name="lero.lero"; version="0.1"; sha256="1jndsgy48fn085ilkh8dfc3w76kfnfj0x70d1m3h59zxi3x9lb82"; depends=[stringr]; }; - lessR = derive2 { name="lessR"; version="3.7.2"; sha256="0rmfrwp6hznivj8809n21ihriq33264yj82l3ii7kil1i3vmac3n"; depends=[ellipse foreign lattice latticeExtra leaps openxlsx png robustbase sas7bdat triangle]; }; - lestat = derive2 { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4p241y4xz0s3ir56kxjqw23g6m80v"; depends=[MASS]; }; + lessR = derive2 { name="lessR"; version="3.7.5"; sha256="1irsi3i6kih7mdkwvd42dknhgz16v7mdrdvfqsrqa85cshpl7aad"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png robustbase sas7bdat triangle]; }; + lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="3.1"; sha256="0wyqqq7w21k87md3pwsz3kdaws345fdhh2xgavwiiywalg0gvxxx"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; lettercase = derive2 { name="lettercase"; version="0.13.1"; sha256="0s2s42v6a3mlz6084sk5wcbap3czgbd53f9p64pxwd1yfj18lbyx"; depends=[stringr]; }; lexRankr = derive2 { name="lexRankr"; version="0.5.0"; sha256="1l0p4qg6lcpp1f2n6mh1glvxzy3bis0c1ra8x9z5v26x31wmwq68"; depends=[igraph Rcpp SnowballC]; }; - lexicon = derive2 { name="lexicon"; version="0.7.4"; sha256="1f2n90xdpbxk6ffzzlib7fxxswwkfrpf404vzx85s016529dy42m"; depends=[data_table syuzhet]; }; + lexicon = derive2 { name="lexicon"; version="1.0.0"; sha256="0wgf5gvmvybdsijnm4hqkigzr25p3i50y3mxp98cngrm1nqdiq7m"; depends=[data_table syuzhet]; }; lexiconPT = derive2 { name="lexiconPT"; version="0.1.0"; sha256="0w53gnr29nzc1ib54rnxdycs0c5f7vpv586qmvxxzy4ar16kisaq"; depends=[]; }; lfactors = derive2 { name="lfactors"; version="1.0.4"; sha256="1r8qlwj3zsm233jfx9ag0q5g1knvjmbwl3785pwcd12zi6f68dcc"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.2"; sha256="0y59iigcpmyrmsiwrpv5agja6vz3wxmxd9sl5hbf1ybm4d0lyky4"; depends=[plyr rARPACK]; }; - lfe = derive2 { name="lfe"; version="2.6-2291"; sha256="1hdzq85y1nxrinikf308mvdmyw883bfzbamr27ffdphlk403ry70"; depends=[Formula Matrix sandwich xtable]; }; + lfe = derive2 { name="lfe"; version="2.8"; sha256="138lnrag64hwjgcsyp9y56kq4gby5c9dqfcsl88b7j02hfly7kfv"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="1.4.1"; sha256="0r9459mmnx1khpw24w943y1x4xl3zcws2cvv61216yzb0xbqwhc0"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; }; lg = derive2 { name="lg"; version="0.1.0"; sha256="0gaid5aihc9dk3igbm8jhsspl1k4k3prqvn7j2vsm92jc7m00iyw"; depends=[ggplot2 ks localgauss logspline mvtnorm]; }; lga = derive2 { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; - lgcp = derive2 { name="lgcp"; version="1.4"; sha256="10gnfqq5vx18w6f52fliyfnrjmyns9q5q59pn2m82q2fqwaz26d8"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_utils]; }; + lgcp = derive2 { name="lgcp"; version="1.5"; sha256="1n1f87qg0y9r22p3q1qjnfrs7xarvsidgqgg6v2bsb55viwy11g3"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_utils]; }; lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; lhs = derive2 { name="lhs"; version="0.16"; sha256="09clh386i5iig8x36lx02p01zqq0kb9hzvw5slv1ggmjnp1rklcw"; depends=[]; }; @@ -7919,13 +8019,14 @@ in with self; { librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.6.4"; sha256="1hdnqgnvzm5116gphxa55k2bc3ksr607px2s2yg1ilmmxdghdccw"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0"; sha256="0qk70rl76lz2izgp2c1asx0yvi8xgfq1yg579kcygxk4pnxjdwv4"; depends=[Rcpp]; }; - lidR = derive2 { name="lidR"; version="1.4.2"; sha256="1m37ncyj2z9yh40qzl4h3s4dpizmfqz8n0fcybpjjhi8yr3lipdf"; depends=[data_table future gdalUtils geometry gstat lazyeval magrittr mapedit mapview memoise RANN raster Rcpp RcppProgress rgeos rgl rlas settings sp stringr]; }; + lidR = derive2 { name="lidR"; version="1.5.1"; sha256="0r6y07ciajn13rhb8n57xnj1lzvz3hvjb4hm29hxclny93c45l16"; depends=[data_table future gdalUtils geometry gstat lazyeval mapedit mapview memoise RANN raster Rcpp rgeos rgl rlas settings sp]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.2"; sha256="012pfiz4l8xrwrjlzwfc0vxw1wpw2n2f2vj39mlpmg5aswg4mm8k"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lifelogr = derive2 { name="lifelogr"; version="0.1.0"; sha256="1wygvw61ygpww0kahxhmjdncwg4zc2cshs0brzw18nfqaj8vpfav"; depends=[dplyr fitbitScraper ggplot2 lazyeval lubridate modelr plyr R6 shiny stringr tibble tidyr]; }; lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; }; - liftLRD = derive2 { name="liftLRD"; version="1.0-6"; sha256="1mnrhdig7kb7g6ffw7x9l8bpn66y7bh3n6ds5r2gb3nplnidi45y"; depends=[adlift nlt]; }; - liftr = derive2 { name="liftr"; version="0.8"; sha256="1z5n7xfmaymkz9pl6pbss351dy626nd0m1wn4jpbxvx74fw99a1y"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; + liftLRD = derive2 { name="liftLRD"; version="1.0-7"; sha256="18gcp5b5jmx37ri4b3nnqvsd0crk5wp53dh5p50arflzw0pn7qn1"; depends=[adlift nlt]; }; + liftr = derive2 { name="liftr"; version="0.9"; sha256="1yg9ql6rklrdcd2qds223naryg3rbdi1mbqrlf5jc3cwzhllcsa9"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; + liger = derive2 { name="liger"; version="0.1"; sha256="0q26qdy7kgqj70ka2gcpji8ni2w8kxnznhp4ig2251xllw9j7dz4"; depends=[matrixStats Rcpp RcppArmadillo]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; @@ -7943,23 +8044,24 @@ in with self; { linearQ = derive2 { name="linearQ"; version="1.0"; sha256="0c6ccllv4zf8zgs3957zjvnkdwbv2ryrs0f5lzk1clc233vm7acm"; depends=[Rcpp stepR]; }; linemap = derive2 { name="linemap"; version="0.1.0"; sha256="0qkbmpfr742xbs3xn5ppx6q0prwrr9mk1c1mv050cm47dm7jcs6l"; depends=[sf]; }; lineup = derive2 { name="lineup"; version="0.37-10"; sha256="1w45ll6phynn03ala0wadmp06rrgg8rcqnhz7hqy4w6q7khbkk6r"; depends=[class qtl]; }; - lingtypology = derive2 { name="lingtypology"; version="1.0.12"; sha256="03rjnr4hy7im88pawrd86nas0fzkgz3mnzdc8rclcfbbv1vyzxf5"; depends=[leaflet leaflet_minicharts magrittr MASS rowr sp stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.0.13"; sha256="1v6n2wdz5zkkc1k88jpjrh6nwias496dg2vvglrjd7g4bymb7715"; depends=[leaflet leaflet_minicharts magrittr MASS rgeos rowr sp stringdist]; }; link2GI = derive2 { name="link2GI"; version="0.3-0"; sha256="0jzk1p9cygcw0xz9hqfzx74acl4ymn3jmcjj0dxrmknsvfdzcl2d"; depends=[gdalUtils raster rgdal rgrass7 RSAGA sf sp]; }; linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; }; linl = derive2 { name="linl"; version="0.0.2"; sha256="1n3sljyycsppk11ri9jijsif3g7v4n8xvk1n4hhx0qg65kh7wmry"; depends=[knitr rmarkdown]; }; + linpk = derive2 { name="linpk"; version="1.0"; sha256="14l3vv507z7x63ziynp07902599syah0icvzq4rxfjf48bf96l63"; depends=[mvtnorm]; }; linprog = derive2 { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; }; lintools = derive2 { name="lintools"; version="0.1.1.4"; sha256="18rqpm0cg233hclcqskdh3mfpwpbawc582j800mjalii233jzr36"; depends=[]; }; lintr = derive2 { name="lintr"; version="1.0.2"; sha256="14l6fi2mdc2swi4xw865q63yngk2b5k553qbyvnhmwq2w4pv07pn"; depends=[codetools crayon digest httr igraph jsonlite knitr rex rstudioapi stringdist testthat]; }; liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; liquidSVM = derive2 { name="liquidSVM"; version="1.2.1"; sha256="0nw8n4qg2jijbnlza15ifzqsl4pj7gjzi4nd71zp7h0aw5mnp80x"; depends=[]; }; lira = derive2 { name="lira"; version="2.0.1"; sha256="10bjmapnlw5z5cnbdpkwisvjkmk7zi9xqrvgmb5psj317zcxfc2p"; depends=[coda rjags]; }; - liso = derive2 { name="liso"; version="0.2"; sha256="072l7ac1fbkh8baiiwx2psiv1sd7h8ggmgk5xkzml069ihhldj5i"; depends=[Iso MASS]; }; lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; }; lisrelToR = derive2 { name="lisrelToR"; version="0.1.4"; sha256="0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5"; depends=[]; }; list = derive2 { name="list"; version="8.3"; sha256="1wffh7xmhdf4hqbpz4ij0759zk0y0zsm160kzfcr2n8s9wdgm5gj"; depends=[coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; listWithDefaults = derive2 { name="listWithDefaults"; version="1.2.0"; sha256="1rv9jq9zlr5dm08mimba6ni2p5vkfybrgrqk1alm7y6mqpx56byp"; depends=[assertthat]; }; + listarrays = derive2 { name="listarrays"; version="0.1.0"; sha256="06siz7ph9ihjv9y97bd02xibkw4qr548cv3yqjqzqw245jzxvhv7"; depends=[]; }; listdtr = derive2 { name="listdtr"; version="1.0"; sha256="08drps03nndpdxswyv8bjm1bcckjav5pjj7fdx3dzyn0v4dfy619"; depends=[ggplot2]; }; listenv = derive2 { name="listenv"; version="0.7.0"; sha256="0ma5jsri2zqkrlsm9nqpikl7imbwfy1glsmk13mblw0q245h49k1"; depends=[]; }; listless = derive2 { name="listless"; version="0.0-2"; sha256="1gr6l4vih7j28kg2mj1xj2yhlpwjc4p894vsxri25vq0r9kgcdym"; depends=[magrittr tidyr]; }; @@ -7967,7 +8069,7 @@ in with self; { liteq = derive2 { name="liteq"; version="1.0.1"; sha256="080ljgb2qsfmyppnlp9acmskgq94pmdbbgbhygqkxvzda5bbas8h"; depends=[assertthat DBI rappdirs RSQLite]; }; littler = derive2 { name="littler"; version="0.3.3"; sha256="1cbsnm4ffzld93b9q8g6g6h6yskjfwa8j1xani5682ipb7r290x7"; depends=[]; }; liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; - live = derive2 { name="live"; version="1.4.2"; sha256="0f04glaji3yy16mlwmizr4c7ykngqnfk7j2zx8smfn2n6biv6qg3"; depends=[breakDown data_table dplyr forestmodel ggplot2 lubridate mlr]; }; + live = derive2 { name="live"; version="1.5.7"; sha256="018k2l3klhkxsb6b8xvrvxajgahb6zd02cngkkayfz2477iy8kdl"; depends=[breakDown data_table dplyr forestmodel ggplot2 lubridate MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.9.1"; sha256="1cvm58kivjw77a2fy1jwsajzl1d0i3i123p6glpwdlqn6rlharck"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; }; @@ -7977,22 +8079,22 @@ in with self; { lm_beta = derive2 { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; lm_br = derive2 { name="lm.br"; version="2.9.3"; sha256="1xadz0rygm58igk0ig0w45132gnsvjxvwqzca4m6v6i6lz9x55pf"; depends=[Rcpp]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; - lmQCM = derive2 { name="lmQCM"; version="0.1.0"; sha256="0y02pbvl5qbfwnhyzilbcpswwmmq0x47ggpg7pcnhd3dv4b6w6zm"; depends=[Biobase genefilter nnet]; }; - lmSubsets = derive2 { name="lmSubsets"; version="0.1"; sha256="0lkccpk2rxv7dlm4jlk9y3cl3s4cdlfi6schvndrk69glcx0v0zd"; depends=[]; }; + lmQCM = derive2 { name="lmQCM"; version="0.1.1"; sha256="1rznr5ky9ngfl8afqh22r4bxkzjyibrwr62f30dcdvpyh863hj0h"; depends=[Biobase genefilter nnet]; }; + lmSubsets = derive2 { name="lmSubsets"; version="0.3"; sha256="1d78gbmxybxb98lapy5m7nyxc7slyxlj50xdh6a4nyckixmf9plp"; depends=[]; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; lme4 = derive2 { name="lme4"; version="1.1-17"; sha256="0czwdy1s8h3slaw73pz0h8qmqczf5135fz6i46i2dv1ql2pbq49x"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; + lmeVarComp = derive2 { name="lmeVarComp"; version="1.1"; sha256="0m6syydy89c52hhi0w503l5vkgya2d5ps70z5wmdd39nm4jna68w"; depends=[]; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; }; - lmem_gwaser = derive2 { name="lmem.gwaser"; version="0.1.0"; sha256="0i315plqq1c8d7nvzk7jj9b3n4pgy27673pgdbii4c5bccwm12vn"; depends=[fdrtool genetics lattice LDheatmap lme4 pastecs qtl stringr]; }; lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; }; lmenssp = derive2 { name="lmenssp"; version="1.2"; sha256="1vc90x3y1vzmzblc15kqar3nd3c3p8p9nvmpk0ib52n0qv5pr6wz"; depends=[geoR MASS mvtnorm nlme]; }; - lmerTest = derive2 { name="lmerTest"; version="3.0-0"; sha256="08n6zdyxjbch8vf4gbp339yirf3ixxdhhai8iafxf3f1q2gcr52v"; depends=[ggplot2 lme4 MASS numDeriv]; }; + lmerTest = derive2 { name="lmerTest"; version="3.0-1"; sha256="0pia69sc8bn37mkiprdf91iilziqb865f94k6x6c26i33fg7rq4m"; depends=[ggplot2 lme4 MASS numDeriv]; }; lmeresampler = derive2 { name="lmeresampler"; version="0.1.0"; sha256="00v3qg5vyjjb0pcbrknzxy80kkwsypkhwkv3nsck5rscaf86y3aq"; depends=[boot dplyr Matrix nlmeU plyr RLRsim]; }; lmf = derive2 { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; }; lmfor = derive2 { name="lmfor"; version="1.2"; sha256="1lad1sfrf6lsksix4nn2c2dc5fx0rfm4kdhvbmqf9dc55f98rla8"; depends=[MASS nlme]; }; - lmm = derive2 { name="lmm"; version="1.0"; sha256="0x5ikb1db99dsn476mf4253dlznlxa1cwnykg1nwnm2vy5qym2fq"; depends=[]; }; + lmm = derive2 { name="lmm"; version="1.2"; sha256="1xymcizqfqh2jp0rxgfgniflyqzgcwg04g9mllva5xgc1ydcg69k"; depends=[]; }; lmmen = derive2 { name="lmmen"; version="1.0"; sha256="0c1yy991bff1hp47rg89j5811l50kb9pdf76834jxh38dr3b4lsw"; depends=[glmmLasso glmnet lme4 lmmlasso mvtnorm quadprog]; }; lmmlasso = derive2 { name="lmmlasso"; version="0.1-2"; sha256="1mvd38k9npyc05a2x7z0908qz9x4srqgzq9yjyyggplqfrl4dgsz"; depends=[emulator miscTools penalized]; }; lmmot = derive2 { name="lmmot"; version="0.1.4"; sha256="1a8msh9yvvd7cv1zxlxdv8arlfvxqghxzcxls23v6ifl5jf4d1p3"; depends=[MASS maxLik]; }; @@ -8005,18 +8107,19 @@ in with self; { lmomco = derive2 { name="lmomco"; version="2.3.1"; sha256="0nyl18kipsab4ka5ywbmw28kkr6i09w4lc9pa96m1fh765zghjxi"; depends=[goftest Lmoments MASS]; }; lmridge = derive2 { name="lmridge"; version="1.1"; sha256="1r4g7482iz4b7jk0gj169bj96ip2wyrff1ndkwhf0qzg6r6vqa8d"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-36"; sha256="0sym9sm1vl6bbgq01jhz1plxqmgh8hrgrn7rw0mwvsalcn6id7xy"; depends=[zoo]; }; - lmvar = derive2 { name="lmvar"; version="1.4.0"; sha256="0pwpsdmqjlj79ybx5rw82qgkjzak941d9vvdzwipjh8n51mcvwcd"; depends=[Matrix matrixcalc maxLik]; }; + lmvar = derive2 { name="lmvar"; version="1.5.0"; sha256="068ib0abpvds0ibb0d6m71svv7d3l0is4kdin1wzsn633kk3zcfy"; depends=[Matrix matrixcalc maxLik]; }; loa = derive2 { name="loa"; version="0.2.43.3"; sha256="0krrv5sicm4xvgilri8nwby6jlidx375b4sk273hxq7bhayw4hqq"; depends=[lattice MASS mgcv plyr png RColorBrewer RgoogleMaps]; }; localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; }; localsolver = derive2 { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; }; locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; }; locfit = derive2 { name="locfit"; version="1.5-9.1"; sha256="0lafrmq1q7x026m92h01hc9cjjiximqqi3v1g2hw7ai9vf7i897m"; depends=[lattice]; }; locits = derive2 { name="locits"; version="1.7.3"; sha256="0sjnwqiqwzdkglvbdxbkg17gjp0vyqvywsy0qq7adxj5hh0yah05"; depends=[igraph wavethresh]; }; - locpol = derive2 { name="locpol"; version="0.6-0"; sha256="1zpdh3g7yx3rcn3rhlc3dm19c4b9kx2k8wy8vkwh744a1kysvdga"; depends=[]; }; + locpol = derive2 { name="locpol"; version="0.7-0"; sha256="1p915n0l09kbwkly627074jslxl01yssp1rf0c7sygvsw6sgy5lm"; depends=[]; }; lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; - loder = derive2 { name="loder"; version="0.1.2"; sha256="15bgspig46nspnslazjgwv54kscimn3zzda6fqcmld3zjhcwl333"; depends=[]; }; + loder = derive2 { name="loder"; version="0.2.0"; sha256="0m6g8c25dmq0wgpy8y6cbggymxdvqwb6lp2yzs5bgpq183512spb"; depends=[]; }; loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; log4r = derive2 { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qakxdsijfh3272spc8xrmdmyw6rj"; depends=[]; }; + logKDE = derive2 { name="logKDE"; version="0.1.0"; sha256="1jp36v8dfdli85lzcya4nvw17fjrsfldm8v487k1s1d1s9qz55vl"; depends=[pracma Rcpp]; }; logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; logbin = derive2 { name="logbin"; version="2.0.3"; sha256="0jvld5lh69288g80ypvqyg0s0nip9hgd8p09b91xp11vnlap0g02"; depends=[glm2 turboEM]; }; logconcens = derive2 { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; }; @@ -8026,16 +8129,16 @@ in with self; { logging = derive2 { name="logging"; version="0.7-103"; sha256="1sp7q217awizb6l8c9p5dix6skpq8j7w8i088x4mm0fc0qr1ba5c"; depends=[]; }; loggit = derive2 { name="loggit"; version="1.1.1"; sha256="1w9a3mbf863dk6lnd95mwr15rxjpv1rra1z45jnqk8w56g1s7q4d"; depends=[dplyr jsonlite]; }; loggle = derive2 { name="loggle"; version="1.0"; sha256="0r1r8m2ckva17vbvwkzhq1lx6bap0kbfj9hxyk46adslcf3xxrxp"; depends=[doParallel foreach glasso igraph Matrix sm]; }; - logiBin = derive2 { name="logiBin"; version="0.1.0"; sha256="146jh5cpydpvv8g3ccrglm88zp8sam4airw521cxcfyg5v8qvdqs"; depends=[data_table doParallel foreach iterators partykit]; }; + logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; }; logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; }; logistf = derive2 { name="logistf"; version="1.22"; sha256="0npwqbl8rfvn6w2y0qpkckj44mvjjccj0cn9axp2wcs03cmz0rp8"; depends=[mgcv mice]; }; logistic4p = derive2 { name="logistic4p"; version="1.5"; sha256="0h0dxyklqc95ykyril1a3d2bdnszj5l9dqbxzh2wbfmk06prvh8b"; depends=[MASS]; }; logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; logitchoice = derive2 { name="logitchoice"; version="0.9.4"; sha256="1vkw7cwp7nwrsj9ifn4gz21zbw9da5rph9lr3w466zxkzdkbldqj"; depends=[]; }; - logitnorm = derive2 { name="logitnorm"; version="0.8.35"; sha256="0bpj3dsxqwx96ffbx8479271nbf30pfvl7914m5af8hacqlga912"; depends=[]; }; + logitnorm = derive2 { name="logitnorm"; version="0.8.36"; sha256="0iag05fhzrizi74bjkl909ky7zxi9yzqx6im2ki86bpczijyfxb8"; depends=[]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.6.5"; sha256="0ak13nfgaima6g75rxbghl7xmagfp4qshj09x1fxh2r2rcags7dk"; depends=[gnm qvcalc]; }; - logspline = derive2 { name="logspline"; version="2.1.9"; sha256="1kd7ricaxbcjl6d9hx7bb5mlkr7x2h7gc8vrmfvlzxppbcghb6vw"; depends=[]; }; + logspline = derive2 { name="logspline"; version="2.1.11"; sha256="0747xl0p6kigc936kyqxqgmwxsh01lb9913w7wq0q05766pnw7kq"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-8"; sha256="1dlyvgd2i4dckd8ic3x75r4sikwalch9b2f13xp5rhkzmfzbprxq"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.0"; sha256="0ygxm5qym1s64pa8a04jf44y786svrkhscda2x781jx8gpil753v"; depends=[abind ggplot2 irlba MASS pls]; }; lomb = derive2 { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvbs0p03hdpx8665fhddcxh3ryy"; depends=[]; }; @@ -8063,10 +8166,11 @@ in with self; { lpc = derive2 { name="lpc"; version="1.0.2"; sha256="1r6ynkhqjic1m7fqrqsp7f8rpxqih5idn4j96fqrdj8nj01znv29"; depends=[]; }; lpdensity = derive2 { name="lpdensity"; version="0.2.2"; sha256="1fv1biyc12zg0wfqcr5kp761fy6n6879knvlxr2zjp6rjssi3h6d"; depends=[ggplot2]; }; lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; + lpirfs = derive2 { name="lpirfs"; version="0.1.0"; sha256="0xkm6ds44v3g0vnh6nribysg1fbphgx81zklx82xmi5cvl5z69c1"; depends=[doParallel dplyr foreach ggplot2 mFilter Rcpp RcppArmadillo vars]; }; lplyr = derive2 { name="lplyr"; version="0.1.12"; sha256="1wcab8wwdzpgb61q83gfn2d34vsrd3qa4xyb9sqna6krss1ii1in"; depends=[bazar dplyr lazyeval magrittr]; }; lpme = derive2 { name="lpme"; version="1.1.1"; sha256="0si90nkgl8bqk8yvd2igdsrngiwqh8891072pfpzipifnd0f5448"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; - lpridge = derive2 { name="lpridge"; version="1.0-7"; sha256="0nkl70fwzra308bzlhjfpkxr8hpd8v1xdnah7nscxa10qlisgr2k"; depends=[]; }; + lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; lqa = derive2 { name="lqa"; version="1.0-3"; sha256="141r2cd9kybi6n9jbdsvhza8jdxxqch4z3qizvpazjy8qifng29q"; depends=[]; }; lqmm = derive2 { name="lqmm"; version="1.5.4"; sha256="117g38m650mi28ff19nd71dadbdphd1ladmrip2kbsnkpcz2q37p"; depends=[nlme SparseGrid]; }; lqr = derive2 { name="lqr"; version="1.7"; sha256="110c18wc3y3nkdwjgrksw20kvvy65822njrpy4gwb100ifigw0v7"; depends=[ghyp spatstat]; }; @@ -8082,7 +8186,7 @@ in with self; { lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; lslx = derive2 { name="lslx"; version="0.6.2"; sha256="0girzjmkmqym5bnw492991smyhvlz7xw70n8hlswpa4lw3x15q2n"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; lsm = derive2 { name="lsm"; version="0.1.6"; sha256="1j68jvb7gvgr77wpq1gzh1jw3cs94im1zrlnvw4jnbgbzsmpql99"; depends=[]; }; - lsmeans = derive2 { name="lsmeans"; version="2.27-61"; sha256="0qw4lkgaynld56ywvdyy5nqvq7c6r2v24gsy54rkcw2n4xhlnahm"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; + lsmeans = derive2 { name="lsmeans"; version="2.27-62"; sha256="1db9ldk8maj8qr2ha3aa5bz01wv4irkiw561fzjcm9slb0iz1k7z"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; lspartition = derive2 { name="lspartition"; version="0.1"; sha256="1c2wp9yl0jzvbh181flzywwqmm6xr5jg9qbfibw4ja9wf6xnfx8w"; depends=[combinat ggplot2 MASS matrixStats mgcv pracma]; }; lspline = derive2 { name="lspline"; version="1.0-0"; sha256="0bc1nfpp1r5fi8rrg295k4r8pm03baqplrzwmk3sn4kdbp0apvgk"; depends=[]; }; lspls = derive2 { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; }; @@ -8101,14 +8205,15 @@ in with self; { lucid = derive2 { name="lucid"; version="1.4"; sha256="1kwl9h7ynp8nhny51xskrbgc3060bawxjkdijhsjzss2hbbygwds"; depends=[nlme]; }; lucr = derive2 { name="lucr"; version="0.2.0"; sha256="0v5g72cl9fg3b3ix34bsmjwwqrnm4ivgcd5mm98c5jd8rrz1xkwq"; depends=[httr Rcpp]; }; ludic = derive2 { name="ludic"; version="0.1.6"; sha256="0srs3bx9cw89mlpg8b8vcmz2gnsv729j3n23pnnxgbh2w7xf705b"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; }; + lue = derive2 { name="lue"; version="0.2.1"; sha256="0is5rd1dz91bzphmfbbzi3s6rgc5g9qza2r26k70xs67dgn0qbjq"; depends=[ncdf4 raster]; }; lulcc = derive2 { name="lulcc"; version="1.0.2"; sha256="1vlaidyqgx5vnf8w2y1a1jmmq7z4195avnv1mryhh414r5r1kpy0"; depends=[lattice raster rasterVis ROCR]; }; lumberjack = derive2 { name="lumberjack"; version="0.2.0"; sha256="0yn6482wrwinabys3awp0jjnzs6mnv29jjpvr980m1jm15nwva4g"; depends=[R6]; }; lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; - lutz = derive2 { name="lutz"; version="0.1.0"; sha256="1yf1bd005nhr5afwzs9y9h36q6hs93c8bfhgjwjvhsjrdl3rz26i"; depends=[V8]; }; + lutz = derive2 { name="lutz"; version="0.2.0"; sha256="1ypi61b0l5pig2lvvq9lmqkqcsxhnf154lxridp0amv5rcmf2fxy"; depends=[V8]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; - lvec = derive2 { name="lvec"; version="0.1.1"; sha256="1mpw01z0n0cql451qmi0b77pbfkhx6jyc4zzs5nl82jb6x3y20wn"; depends=[BH]; }; + lvec = derive2 { name="lvec"; version="0.2.2"; sha256="0n1l26n4khlalqd0b9bi7vc3kr5jh6mr56ca0rmnnl6bl9742nr5"; depends=[BH Rcpp]; }; lvm4net = derive2 { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; - lvnet = derive2 { name="lvnet"; version="0.3.2"; sha256="0ynp7399q98dgh51fkw1r1z8iy3qm41ny887a955n8kp8pp9l737"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; + lvnet = derive2 { name="lvnet"; version="0.3.3"; sha256="14jik7kxljlpk0fp3gmy0i6by78higmqz1n88dy8wczcvms66ci0"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.0"; sha256="01sisj2vbx2yb5w9cjzyaf9j46vh4kkw05xccq1f7wmsg69zmj6b"; depends=[ggplot2 RColorBrewer]; }; lwgeom = derive2 { name="lwgeom"; version="0.1-4"; sha256="0x58a04sklrr6vr38hbd2900b3bigdfj7zyk6pzj9y7yy5mr2cjg"; depends=[Rcpp sf units]; }; lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; }; @@ -8136,6 +8241,7 @@ in with self; { macleish = derive2 { name="macleish"; version="0.3.2"; sha256="1kna1wq3p6xfzfdhw8dpdfvy4l656xcrra1f0ir86a815pm2a8l3"; depends=[dplyr etl lubridate readr rgdal rgeos sp]; }; mada = derive2 { name="mada"; version="0.5.8"; sha256="17d41kpxjf6h8j83w6jhxm71f03nc8i2aw0xaqzrpcf5rxxy8wv8"; depends=[ellipse mvmeta mvtnorm]; }; maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; + maditr = derive2 { name="maditr"; version="0.5.1"; sha256="029jhapxssnrnmdf8cmdaw87gdd970538jvz6cq9k9iavw7zki7y"; depends=[data_table magrittr]; }; madness = derive2 { name="madness"; version="0.2.3"; sha256="0qmqgrjxb0853m9kdi8cl1b9q9dljdi2zylw22asfv77f323413z"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; madrat = derive2 { name="madrat"; version="1.22.1"; sha256="0wk2svhi4209p8ab8i2g9q22kswpisphb2a9ln5lzwdhnryk4ya9"; depends=[digest magclass spam stringr]; }; @@ -8147,14 +8253,14 @@ in with self; { magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; magicaxis = derive2 { name="magicaxis"; version="2.0.3"; sha256="08nkf9k2ijlm52ybncfiwrghy911wpvwpvdvllcz2d4slk1vdakj"; depends=[celestial mapproj MASS plotrix sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; - magick = derive2 { name="magick"; version="1.8"; sha256="0qi86fhqaxad9bbigfv1czxhxqi3x49376pyhfkw7lc7r2fxkx6y"; depends=[curl knitr magrittr Rcpp]; }; + magick = derive2 { name="magick"; version="1.9"; sha256="1z6wci73kaqp3ky0pfzq9mifrhs3fdsnlzqx57c3f7aryh6f2ry2"; depends=[curl knitr magrittr Rcpp]; }; magree = derive2 { name="magree"; version="1.0"; sha256="1qkd6p5g3aigcb0f4d08gc5323alvahzmazm3bzsmz1w033xd1hh"; depends=[]; }; magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[R_utils rJava stringr]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; - makedummies = derive2 { name="makedummies"; version="1.1"; sha256="1qpkghlgkzpzai290kidkmwhn4aj0balb17rs2l5amsml942lq0a"; depends=[]; }; + makedummies = derive2 { name="makedummies"; version="1.1.1"; sha256="0aqf7hfbajfsszmqx1id8pp8yj6fzvdsdis9z4s87llf0vxq4agl"; depends=[]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; malariaAtlas = derive2 { name="malariaAtlas"; version="0.0.1"; sha256="1c1bvfs1azvlci2yrgw5xlr460fdjwikm3vsdfz8lj1xzs1w220c"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal sp stringi tidyr xml2]; }; mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; @@ -8163,9 +8269,9 @@ in with self; { manet = derive2 { name="manet"; version="1.0"; sha256="1hb5mv05zcv4s2bpyh3vgkyf4r78fyvcwl3p1kwlwqn9cv1lgci2"; depends=[combinat igraph MCMCpack]; }; mangoTraining = derive2 { name="mangoTraining"; version="1.0-7"; sha256="0lw46j44jhdcyh079a7zjmxcnv5c6qsfachinlwv3ild1gwggr3p"; depends=[]; }; manhattanly = derive2 { name="manhattanly"; version="0.2.0"; sha256="185fkakx4v35n4gmlpk2kfm2bm8p320q4khkw936m09zx3aqz398"; depends=[ggplot2 magrittr plotly]; }; - manifestoR = derive2 { name="manifestoR"; version="1.2.4"; sha256="1hd4qsa2xsa1dq5jnwh1bph34glkpaabjmsnavdjhkfzjilp32ya"; depends=[base64enc dplyr functional httr jsonlite magrittr NLP psych tibble tm zoo]; }; + manifestoR = derive2 { name="manifestoR"; version="1.3.0"; sha256="1bxmlg6fmr4ky9m7b65rrylspwhwc8k9s1cbxnx9dyl33wh39ci6"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych tibble tm zoo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; - manipulateWidget = derive2 { name="manipulateWidget"; version="0.9.0"; sha256="18zk1f3dk63crpfpljafakdvfvd0494kbws0dwahwfr60avvvx2v"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny]; }; + manipulateWidget = derive2 { name="manipulateWidget"; version="0.10.0"; sha256="1zagrbwkn2d50zzw8i2vyb1hsq4cydmfsqiy1a2qlp6zrv8a6q9x"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny webshot]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapdata = derive2 { name="mapdata"; version="2.3.0"; sha256="0xnxh73rgcq55zrw81a2bq8yd67bxc2rafp4shf6nyrqj04iip0y"; depends=[maps]; }; @@ -8173,40 +8279,42 @@ in with self; { mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; mapfuser = derive2 { name="mapfuser"; version="0.1.2"; sha256="1q7l6rfs6dv76ifizfqq4pdpjpb2zwzd3vvrnhdzh8vw2mrlqcjg"; depends=[doParallel dplyr foreach ggplot2 igraph lazyeval LPmerge mgcv plotly stringi tidyr visNetwork]; }; mapmisc = derive2 { name="mapmisc"; version="1.7.2"; sha256="0w0yvdnxk6gjcc86b6imq764va9f9hjan3ayw7qrbjpqx16fs7dx"; depends=[raster sp]; }; - mapplots = derive2 { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; }; + mapplots = derive2 { name="mapplots"; version="1.5.1"; sha256="18s2y66f8vi8g2r8a25zbgp2xm079r8v8qxv0w71h8krycs6vs9p"; depends=[]; }; mapproj = derive2 { name="mapproj"; version="1.2.6"; sha256="1rggww8cbwv0vzlj5afzhbsbngg4bzj5znbkz7wmxsbshfbsm9b2"; depends=[maps]; }; mapr = derive2 { name="mapr"; version="0.4.0"; sha256="169ah9v7cpw3hmaj6n575gi1zwazf4vh59n46zghb1x68nc2gqs0"; depends=[data_table ggplot2 gistr jsonlite leaflet RColorBrewer rworldmap sp spocc]; }; maps = derive2 { name="maps"; version="3.3.0"; sha256="05i2ppl5z4p8rawgqmy3z4ia05fcblpq1vvrmrkgkkpdlhczx6hr"; depends=[]; }; + mapsRinteractive = derive2 { name="mapsRinteractive"; version="0.1.0"; sha256="1qjc5hffrk2bjw6ihlna1h0k3q9s9i19l0q0mgvcm9wpjy4c8gra"; depends=[gstat raster rgdal rgeos sp]; }; mapsapi = derive2 { name="mapsapi"; version="0.3.5"; sha256="0v33kkny98xql6m6rp2xh39rsp00r1crpin8gqw5wh5x28n20sna"; depends=[bitops magrittr plyr sf xml2]; }; maptools = derive2 { name="maptools"; version="0.9-2"; sha256="075lmb3b62171cw2dg8fv1vwmvfzg39r1ji7jwb8s5k9dz88ry1v"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; - mapview = derive2 { name="mapview"; version="2.3.0"; sha256="07sp891j8dqryjibwdnb2j0d5kjnbndl13hgazqrk5rg4phj0hl5"; depends=[base64enc brew gdalUtils htmltools htmlwidgets lattice leaflet png raster Rcpp satellite scales sf sp svglite uuid viridisLite webshot]; }; + mapview = derive2 { name="mapview"; version="2.4.0"; sha256="0gm9swj2i9f6wk0lc4kpr2f1171lys9pbycw272h3l984x8syy61"; depends=[base64enc brew gdalUtils htmltools htmlwidgets lattice leaflet png raster Rcpp satellite scales sf sp svglite uuid viridisLite webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1"; sha256="0psjva7nsgar5sj03adjx44pw0sdqnsd96m4g6k8d76pv30m1g7l"; depends=[cmrutils fda zoo]; }; march = derive2 { name="march"; version="1.4"; sha256="1wfhm33k2j5yim56sg0wd02ypfhlp9fc138vmdsdjp6nh4y23hnj"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; - marelac = derive2 { name="marelac"; version="2.1.6"; sha256="024gbrdby6h722j58wl8xn8027sanlpnz1l3hhxnllwzbz3mbdz4"; depends=[seacarb shape]; }; + marelac = derive2 { name="marelac"; version="2.1.9"; sha256="07xhlsdzz2j5smh3v4hpm8zp4ljg9aa3i67j65hs1cq27q1jg1n7"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; - margins = derive2 { name="margins"; version="0.3.0"; sha256="0i6c39acyyvxsx2lkza2afjyhpdlb9fx0zssr24g0xdk3f7c2dc2"; depends=[MASS prediction]; }; + margins = derive2 { name="margins"; version="0.3.23"; sha256="1gn18bmz7zwdv5fm62g4kj1x0y4lzhwvwgk4xc9hfi2mh5w08j4f"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; marinespeed = derive2 { name="marinespeed"; version="0.1.0"; sha256="1r9bpggb88px8149dsga3xmkjhjq6ybs6a5kp60qz28iyr183mar"; depends=[bit geosphere sp]; }; markdown = derive2 { name="markdown"; version="0.8"; sha256="1vcgsh2m2f5kfgappgg71nbf04ff0j1sbk668krjs3r2n89dk3sk"; depends=[mime]; }; marked = derive2 { name="marked"; version="1.2.1"; sha256="138m1clidyhahpz111iblff2w44m8zp0302vcj46frk1c60c46qi"; depends=[coda expm lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markmyassignment = derive2 { name="markmyassignment"; version="0.8.1"; sha256="1y388s73b1zs482d1d7z40kg4hizp46lc3279xspm2ryx4m49mzj"; depends=[checkmate codetools httr lazyeval rlang testthat yaml]; }; markophylo = derive2 { name="markophylo"; version="1.0.6"; sha256="1gyj3ykwh4ljrb5s80hihy7wl89y3p4xkckspvv4ynl9lnsbm7cs"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; - markovchain = derive2 { name="markovchain"; version="0.6.9.8-1"; sha256="1av89829fwnf2bll7b75v2vrglw4130d5c42c3i1fiqh54jxjy7k"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; + markovchain = derive2 { name="markovchain"; version="0.6.9.11"; sha256="0mmsj5vskbp7cs28iak5wmvx6ixq9xdd14niv7iixa19mmwc8p1d"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive2 { name="marmap"; version="1.0"; sha256="187zqmpdd4kl5dviphfzdhjlaa9bss1gx4wxxc8zgn4q1g66f4c2"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; - mason = derive2 { name="mason"; version="0.2.5"; sha256="1v2gja8kbwzx5c8y8gchh4rwwprv99ad0nhgb0hnfgjnqsbdmdv7"; depends=[assertive broom dplyr lazyeval magrittr tidyr]; }; - matchMulti = derive2 { name="matchMulti"; version="1.1.6"; sha256="05nkrncrf7vq2bmqbhm9n6p6cyb4drbhjrrfdcw6qcdgvh3bbiy0"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; + mase = derive2 { name="mase"; version="0.1.1"; sha256="1s8hcsz3ja3rghsv0fz82mlz4sx7dwx8y7h97minhrnj9aby9g82"; depends=[boot dplyr foreach glmnet magrittr MASS Matrix Rdpack rpms survey]; }; + mason = derive2 { name="mason"; version="0.2.6"; sha256="01ppc7f18kf4xv4lrhib0cfm85v658grmxpny3h3kdb4pi4rbspy"; depends=[broom dplyr lazyeval magrittr tidyr]; }; + matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; }; + matchMulti = derive2 { name="matchMulti"; version="1.1.7"; sha256="0k5psmjzcyr7pm603vni7w2hvslck05r81cngm26pql2prdrv5yk"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-5"; sha256="083gnqjxvzgqd0lvg13qwzw3cp1imp4xn2nacspfxqg4878jjpn3"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.3.0"; sha256="1rpw5a52alh5diiqr7f87vhpgp3w3f8lg8wkaqvr5idid9fkll1i"; depends=[Rcpp RcppArmadillo]; }; matconv = derive2 { name="matconv"; version="0.3.2"; sha256="0vnmqz5vzv5n0cfpgr30gkl0pv8p2b5cp3ap6mn01sxd671lx38z"; depends=[]; }; mateable = derive2 { name="mateable"; version="0.3.1"; sha256="1ka9xxicibpfg6k3njq5f5576jwj734r1mb46a2cmiyq676ks7pp"; depends=[FNN Rcpp sn]; }; - mathgraph = derive2 { name="mathgraph"; version="0.9-11"; sha256="0xikgzn24p0qqlrmaydmjk5yz5pq2rilsvpx86n3p2k2fc3wpwjy"; depends=[]; }; - mathpix = derive2 { name="mathpix"; version="0.2.0"; sha256="0a2yybhim2l08n03505ks8vzk8w8azlz3pngsczzd42dqfdphi9q"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; + mathpix = derive2 { name="mathpix"; version="0.3.0"; sha256="1a49yda4r9a6pbs641ch2kmxg3pf8zxfrfi30r19z6g15jfgdrvf"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; matlabr = derive2 { name="matlabr"; version="1.5.0"; sha256="0gy639fv0b85h4z96b2b3m635q4w62q63kfxfqny3pwr0r5vsc2p"; depends=[stringr]; }; @@ -8230,18 +8338,17 @@ in with self; { mazeGen = derive2 { name="mazeGen"; version="0.1.3"; sha256="192xygg3l4rpqp49sgd5hpp4h3f8wjhyldn0l8abxhsks7jd2kfb"; depends=[igraph]; }; mazealls = derive2 { name="mazealls"; version="0.2.0"; sha256="14j6syw1zkgs4cnmxzqpm6klmgvck2gg97wkzmy9al6n0biy8gmb"; depends=[TurtleGraphics]; }; mazeinda = derive2 { name="mazeinda"; version="0.0.1"; sha256="0ns4ib73y4fghf7p1wg0a05js4mqr66dpp49p1h039pqrb0f1vwd"; depends=[foreach]; }; - mbbefd = derive2 { name="mbbefd"; version="0.8.8.1"; sha256="0akga4p8nj5nnfv18gk84mhl2nd6s10k1c1rh730sd44qm6zpiai"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; + mbbefd = derive2 { name="mbbefd"; version="0.8.8.2"; sha256="1168r9gkz3z1qzh3pjh8s0wlpwlrk2rr1p91ldch9c001ym9y6mz"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; - mbest = derive2 { name="mbest"; version="0.5"; sha256="0l6vmcqkd2b0b90jmsswrhbdmhq2x92g7sr2l99rp7xp1cxdq02w"; depends=[bigmemory foreach lme4 logging nlme]; }; + mbest = derive2 { name="mbest"; version="0.6"; sha256="1x0f7y5hj6a35wq1xn6g7jyjn9c4zryahwlf07qrypgrcnj2m8vx"; depends=[abind bigmemory foreach lme4 logging nlme]; }; mbgraphic = derive2 { name="mbgraphic"; version="1.0.0"; sha256="0b4xr2ycx8v56fp40lnxv69qfp0yzai2hdwk3kw4wsmir91d2a91"; depends=[diptest dplyr extracat GGally ggplot2 gridExtra hexbin magrittr mgcv Rcpp scagnostics scales seriation shiny]; }; - mbir = derive2 { name="mbir"; version="1.1"; sha256="0nn4spw8bx0wnshwnph06wxdshxxcs100d5wh0apwrhz3w8xv2x6"; depends=[]; }; + mbir = derive2 { name="mbir"; version="1.3.1"; sha256="0wprbgjf02ybjn3yakyvz0niv2szarlmmcizdyjsaksh21byd46x"; depends=[]; }; mblm = derive2 { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; }; mbmdr = derive2 { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; }; - mboost = derive2 { name="mboost"; version="2.8-1"; sha256="163pf6dhl46w9n069pybqqc8khafhdkqhf9fmm095g66ypdbga4n"; depends=[lattice Matrix nnls party quadprog stabs survival]; }; + mboost = derive2 { name="mboost"; version="2.9-0"; sha256="0hfw69h3j4hwwrdinmazl4abhij2drki5jp9i9qz30gyy16wf0f2"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; mc2d = derive2 { name="mc2d"; version="0.1-18"; sha256="1ljw8ms661bsdqbfpjvvrif9n0c2i6lzxyqj4rxhxsp3dj18w3g3"; depends=[mvtnorm]; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; - mcIRT = derive2 { name="mcIRT"; version="0.41"; sha256="0pbwydl4zjzwdlpzwpqm4xhq716zgq9s7bvcbrqp6q0jkba9zjnw"; depends=[Rcpp RcppArmadillo]; }; mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; mcPAFit = derive2 { name="mcPAFit"; version="0.1.4"; sha256="1h5kiry8bvdrgyqf7cqsag0b7rscwc7phayzf6h4css1667bvm0g"; depends=[PAFit RColorBrewer Rcpp]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.2"; sha256="12h4bv3hx1m6bsqdxj5n3b5gh98ms508am8pigz7ckmv0xkyhx85"; depends=[]; }; @@ -8250,17 +8357,18 @@ in with self; { mcclust = derive2 { name="mcclust"; version="1.0"; sha256="00qprmsjwbn2d0jl7p9mz8pv7k8ld3mzk862pr1grigk0lqwhx06"; depends=[lpSolve]; }; mccr = derive2 { name="mccr"; version="0.4.4"; sha256="1scqds1yx317qmjappy2h1m564dcmsqqfpdm8pm3plalag16xrhj"; depends=[]; }; mcemGLM = derive2 { name="mcemGLM"; version="1.1"; sha256="07ky3bvcns24qia9pyvf5lp7764h8gn2g8zr304iz4x9bq6jvsi0"; depends=[Rcpp RcppArmadillo trust]; }; - mcga = derive2 { name="mcga"; version="3.0.1"; sha256="0q0nn881lii8wfw28k8jh9z0kbi5ljcwi2wpq460k2w3agsjzw5n"; depends=[GA Rcpp]; }; + mcen = derive2 { name="mcen"; version="1.0"; sha256="0dgic137n3qvxljj3f7j3kq3x2rkblxzg55hjbknspwp0i7i4lx8"; depends=[faraway flexclust glmnet Matrix]; }; + mcga = derive2 { name="mcga"; version="3.0.3"; sha256="109m01mab5awjf8zjzwl9j7hzac15dyq3x6zba9hsy5i02k5d5w4"; depends=[GA Rcpp]; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh46966v01dh26fy79dfklk3zjf262zp3c62ld9yf"; depends=[coda]; }; mcglm = derive2 { name="mcglm"; version="0.4.0"; sha256="0k5zkdq3c4fvyhk0lfwikmrxcrd2hg3s820l8rswz7xhl645zr5a"; depends=[assertthat Matrix]; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; }; mclcar = derive2 { name="mclcar"; version="0.1-9"; sha256="0bwnivmajsrvmwskhk44qhz4nnc0irxq83g0kzbj4wshhivnwryp"; depends=[fields maxLik nleqslv rsm spam spdep]; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; - mclogit = derive2 { name="mclogit"; version="0.5.1"; sha256="1qnkkjq7gxivpz3mmbq5dx9a128r3xhrdzx96kc80h3w67yc7hbl"; depends=[Matrix memisc]; }; - mclust = derive2 { name="mclust"; version="5.4"; sha256="1i3v1q8qq0al3ifvjhcvxfsg68cx9mq8jz67jwmiqai78mw0aqvk"; depends=[]; }; + mclogit = derive2 { name="mclogit"; version="0.6"; sha256="13n3xbdjbpj0ddq9jv2ssd6llrif38ala6c4schih0328cklgpcj"; depends=[Matrix memisc]; }; + mclust = derive2 { name="mclust"; version="5.4.1"; sha256="1vcl4nl8by2vj2k9k84imy5m850khkgd8q02a8ica1h8vz9ijgn4"; depends=[]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.0"; sha256="02j87p2z9z3b8kxnvnm1syjpv6axcs09fs3mnrl1n2q6jyc4gwsr"; depends=[Rcpp RcppArmadillo Rdpack]; }; mcmc = derive2 { name="mcmc"; version="0.9-5"; sha256="1i3rahph8pbhi5dsyjnkazqklg4lhh3azlyvx4kvabx50q0awxn6"; depends=[]; }; - mcmcplots = derive2 { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda colorspace denstrip sfsmisc]; }; + mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; }; mcmcr = derive2 { name="mcmcr"; version="0.0.1"; sha256="0g64df8v6snbcmk0kynfppq1mqaz9z8apfsm1zn3ch5q2afg0kqy"; depends=[abind checkr coda tibble]; }; mcmcse = derive2 { name="mcmcse"; version="1.3-2"; sha256="0yz0zhqhsxxg1b0cf15ijxfj4q8csjng18bmq45anabllq16ymkj"; depends=[ellipse Rcpp RcppArmadillo]; }; mco = derive2 { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2brgxay69kcwm7y7s3gziq74fn4rw"; depends=[]; }; @@ -8275,20 +8383,23 @@ in with self; { mda = derive2 { name="mda"; version="0.4-10"; sha256="19g6kn6g0shidrjfffklbmzc5w7mcimrxhagx4nmpslg59ibqdkh"; depends=[class]; }; mdatools = derive2 { name="mdatools"; version="0.8.2"; sha256="11xlfgcn8gb19alfjp268mlid9g2rl69s1nlm5plwyy5h8x0hvcj"; depends=[]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; + mdendro = derive2 { name="mdendro"; version="1.0.0"; sha256="0pxw4zkv38syajcsbcp5f5wn8bw0ah4ay950iyhql044hlmav99j"; depends=[rJava]; }; mdftracks = derive2 { name="mdftracks"; version="0.2.0"; sha256="0l8dc6ljrhbm8jwadaa3xkf6nx90vyiig15p7rryswczz9hw5ga6"; depends=[hellno]; }; - mdhglm = derive2 { name="mdhglm"; version="1.6"; sha256="1lvckais4c3pbf6zrpfkdlyqhcg4jaw11n00622h9ks413fl788v"; depends=[boot Matrix mvtnorm numDeriv]; }; - mdmb = derive2 { name="mdmb"; version="0.6-17"; sha256="1ydvfjqid7bsgryr8j77ajmh2q40s3gh67n8027f70pa8amr9fnq"; depends=[CDM coda MASS miceadds sirt TAM]; }; + mdmb = derive2 { name="mdmb"; version="0.7-19"; sha256="0clygi60wllc04spbm4982qpnsabjapmbjn5k0k9yl1xbd6960g1"; depends=[CDM coda MASS miceadds Rcpp RcppArmadillo sirt TAM]; }; mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; }; + mds = derive2 { name="mds"; version="0.1.0"; sha256="16c40m5fmj02is4vw9w284dn9pimlqp905p5ka0jw91krawasd2x"; depends=[lubridate parsedate]; }; mdsOpt = derive2 { name="mdsOpt"; version="0.3-1"; sha256="0fyzmbaqnj42nhl32cj1kycrqkfx2qvb5vpi0qj98fi6iwsa4psq"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; }; mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; - mdsr = derive2 { name="mdsr"; version="0.1.5"; sha256="0b80l478v68w91vsmvvyvnmk0yasybmm013psy4181lhvxc93kma"; depends=[babynames DBI dbplyr downloader dplyr ggplot2 mosaic RMySQL tidyverse]; }; + mdsr = derive2 { name="mdsr"; version="0.1.6"; sha256="1z0sjrvnvm1bgifapmaay57lr5dgj84xzppwn579g8kammaav89x"; depends=[babynames DBI dbplyr downloader dplyr ggplot2 mosaic RMySQL]; }; + mdsstat = derive2 { name="mdsstat"; version="0.1.0"; sha256="0k7sddnydxy39idk8z1j2632xyikpvdjdcm9xk72k0yj0cw6mr9r"; depends=[lubridate mds]; }; mdw = derive2 { name="mdw"; version="2017.12-03"; sha256="054vssnypbik0yf6smicggnkrqf6kx8k21nbf5rminsh00sx39k1"; depends=[]; }; - meaRtools = derive2 { name="meaRtools"; version="1.0.2"; sha256="1xxw0aq4k5z4i3ndja1rxl9calb8hmp4jv9l79zm33vdlggpkxzg"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; }; - meanShiftR = derive2 { name="meanShiftR"; version="0.51"; sha256="0qcciayriygfwkb15n863amcpcfl97fr1sarwm3d269idf5m7w6x"; depends=[]; }; + meaRtools = derive2 { name="meaRtools"; version="1.0.3"; sha256="03b3267h61kc9xgyl3j2n6i6rmm31rhzdlqa15qifsld23z72rs0"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; }; + meanShiftR = derive2 { name="meanShiftR"; version="0.52"; sha256="0mignhiz6vjpjbxg4dkc4g5mnf5mr7ifdpj7ickhspallj6l8508"; depends=[]; }; meanr = derive2 { name="meanr"; version="0.1-1"; sha256="080x21jnbsl6qlrgv12p9qd332ciph3lh18fgs9jagfyygf4f9hg"; depends=[]; }; measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; }; measurements = derive2 { name="measurements"; version="1.2.0"; sha256="1k47xmydgd9lhc6phr40zphnibiq817f5nf8619ibla2pridjn1l"; depends=[]; }; + measures = derive2 { name="measures"; version="0.1"; sha256="1sksgp7csmwx3z981fhi2pf75kkxhfjy2zkdw8ds5iz95hd236ih"; depends=[]; }; meboot = derive2 { name="meboot"; version="1.4-7"; sha256="1i0h71aj49hyj889447s611gz668ys7xlr1i82b5nvaf6chfbfin"; depends=[dynlm nlme]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; medfate = derive2 { name="medfate"; version="0.2.2"; sha256="1vw9j04063sjwyfdkk94xsgz5zps7vmqha6dbsvi8ncb951cfijp"; depends=[meteoland Rcpp sp spdep]; }; @@ -8304,46 +8415,47 @@ in with self; { mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; meltt = derive2 { name="meltt"; version="0.4.0"; sha256="0m0r7in1s8vq2pvq7pxgwjfhqds8pwhcrn5hy0wa126s1y88v34x"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; }; - mem = derive2 { name="mem"; version="2.12"; sha256="0075i2mbkck06bljck44d26ys68p8vjfb1jhgzrjy1sv2g2w0qa8"; depends=[boot dplyr ggplot2 mclust RColorBrewer reshape2 sm stringr tidyr]; }; - memapp = derive2 { name="memapp"; version="2.9"; sha256="1g53c90yvh34jisbcy5nvch7yyi7yxx7sg32492rk97h6hr2j8qv"; depends=[dplyr DT formattable ggplot2 ggthemes magrittr mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinyjs shinythemes stringi stringr tidyr]; }; + mem = derive2 { name="mem"; version="2.13"; sha256="1k8nda479k7w9jll2wxiasx06nz39vdcz8mssfj33amb6bk874kp"; depends=[boot dplyr EnvStats ggplot2 mclust RColorBrewer RcppRoll reshape2 sm stringr tidyr]; }; + memapp = derive2 { name="memapp"; version="2.10"; sha256="0kkim1mrajpc7b20snsrmwcki2mc2winha4lq4ybb22s16isw4p0"; depends=[dplyr DT foreign formattable ggplot2 haven magrittr mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinyjs shinythemes stringi stringr tidyr]; }; meme = derive2 { name="meme"; version="0.2.0"; sha256="17zpnspc90nlga3iyl4ahasr70mnrhzja4pz7zhmjddhzjs8x3sz"; depends=[ggplot2 magick showtext sysfonts]; }; - memery = derive2 { name="memery"; version="0.4.2"; sha256="0wfp3hf567a1q6mhrsgn4hr8x52yp4na8783f2d19hm0c3r4z51q"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; + memery = derive2 { name="memery"; version="0.5.0"; sha256="0bin1rmna5z0y568jbnga7pcrkgjy04av3bzcyf3fpvqqmn36r8f"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; memgene = derive2 { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; }; memisc = derive2 { name="memisc"; version="0.99.14.9"; sha256="1gh6shm9nwfjwfi5f4cz2jsldfdnkj6f73279l86wki5gdf36zri"; depends=[lattice MASS repr]; }; memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; }; memoise = derive2 { name="memoise"; version="1.1.0"; sha256="034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj"; depends=[digest]; }; memuse = derive2 { name="memuse"; version="4.0-0"; sha256="1g63nssxrgqgzw8qjz8202qpwhps8fbck6pn77j2wsc82dm73y7v"; depends=[]; }; merDeriv = derive2 { name="merDeriv"; version="0.1-4"; sha256="1gkxc2bf4fx3vbf1nq1g713hhhx7031wchxmgr2ydwfrighwf8qg"; depends=[lme4 Matrix nonnest2 sandwich]; }; - merTools = derive2 { name="merTools"; version="0.3.0"; sha256="1kc32zm1wmmivf1qfs6vi7y8kwibj6sr540is82dyh7xdmbc5mx3"; depends=[abind arm blme broom dplyr DT ggplot2 lme4 mvtnorm shiny]; }; + merTools = derive2 { name="merTools"; version="0.4.1"; sha256="1224cmkxbkd3r10z73ww0s1nyzg00x55fv91pn1gp8p7cmpp0ni2"; depends=[abind arm blme broom dplyr DT foreach ggplot2 lme4 mvtnorm shiny]; }; merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; - meshsimp = derive2 { name="meshsimp"; version="0.1.1"; sha256="0cdgq4vfjf0h6l55v687k5xs0nwmlpqmw424xgnsfnwxw5ljcvb1"; depends=[plot3D Rcpp RcppEigen]; }; + messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; metRology = derive2 { name="metRology"; version="0.9-26-2"; sha256="1i9lxgphn8nmkcp2zgjs6ylbccmfgv9lfch00xmx1xfb538jz82q"; depends=[MASS numDeriv robustbase]; }; metScanR = derive2 { name="metScanR"; version="1.2.0"; sha256="1x32f23w5f3s7sc5gbbqzq9s83clarskj9vpnfnwryrx87dg1jjc"; depends=[geosphere leaflet plyr RColorBrewer RCurl]; }; - meta = derive2 { name="meta"; version="4.9-1"; sha256="1nv8yzcwamflcii5x6l3h5p1q7q4xrd74v40njnpgmhkn4vrkyax"; depends=[]; }; + meta = derive2 { name="meta"; version="4.9-2"; sha256="1hzf6jphgz61d3rq8dqbyw3iddyv2x5a3xik3b606p8si19b66sh"; depends=[]; }; meta4diag = derive2 { name="meta4diag"; version="2.0.7"; sha256="024rxnqzw9xydy0mm1w38s739qgkzjsifq23bwpvkwj0x0jnwry0"; depends=[caTools shiny shinyBS sp]; }; + metaBLUE = derive2 { name="metaBLUE"; version="1.0.0"; sha256="0ppn4bvr10z32pghmv4wjv86k6n5y5bkfxc6h5mvb556v6jnl6d8"; depends=[Matrix]; }; metaBMA = derive2 { name="metaBMA"; version="0.3.9"; sha256="14c3q4aw89r3apzm0ils886xsc6agbn8d2wgp47dc2ddwf5n8p58"; depends=[coda LaplacesDemon logspline mvtnorm runjags]; }; - metaLik = derive2 { name="metaLik"; version="0.42.0"; sha256="1rk5mwgmgnqq2hrzbh936hzw3aa815l12r1a1qywap5ggmmyhszl"; depends=[]; }; + metaLik = derive2 { name="metaLik"; version="0.43.0"; sha256="1li40pgd9z00nrph9njwn6wysb1i9dkpqzcp6fzds6asvcxlqqfl"; depends=[]; }; metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; metaMix = derive2 { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table ggplot2 gtools Matrix Rmpi]; }; metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; }; - metaSEM = derive2 { name="metaSEM"; version="1.0.0"; sha256="1i77w7b6xbi8p43s9vicj121kz7f3qp1zhqwy6qc5xcj9qaqjklp"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; + metaSEM = derive2 { name="metaSEM"; version="1.1.0"; sha256="1jhlv93a53pnksllrvqiqv5229cvxfa2mk768yncdfv67d04vwj9"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; metaboGSE = derive2 { name="metaboGSE"; version="1.0.2"; sha256="1nfcjplry2ba98yi3flk6zcvlys57gri3582mylh543xkcvlrifz"; depends=[AnnotationDbi ape Matrix sybil topGO]; }; metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; metacart = derive2 { name="metacart"; version="1.0-0"; sha256="13dp9yz6yjd2jc7lf3w3ac3vk69ry7zygf6xnvzrcwsdmxd0258n"; depends=[ggplot2 gridExtra rpart rpart_plot]; }; - metacoder = derive2 { name="metacoder"; version="0.2.0"; sha256="0dyd16yy7adpyksfpg6d414s1l6nls5hv1k938mn7fji1px14sgj"; depends=[ape biomformat cowplot dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr taxa taxize traits vegan zoo]; }; + metacoder = derive2 { name="metacoder"; version="0.2.1"; sha256="1l054p870679ni57l234bvma88s7cpr2ddryb87dxfh5510y86bb"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr taxa taxize traits vegan zoo]; }; metacom = derive2 { name="metacom"; version="1.5.0"; sha256="1zsnzzxv3vsj1swybhh6g8ddffp4xrn081y192xa6a78ii8q4kav"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; metafor = derive2 { name="metafor"; version="2.0-0"; sha256="0h14wd7hr1d40p5r70f2jgdgj24jwpnr4nrj6yp5qjr466v81z96"; depends=[Matrix nlme]; }; - metaforest = derive2 { name="metaforest"; version="0.1.0"; sha256="1jmd3rr3w9mdxgc1kqz7pc64pa8vrl4qf92h64791x1p8s71cpzk"; depends=[edarf ggplot2 metafor ranger reshape2]; }; + metaforest = derive2 { name="metaforest"; version="0.1.2"; sha256="0ppv9vdwxggccn2202snl13vid3v2kx5ps81cadghg2kcd8axfbs"; depends=[ggplot2 gtable metafor mmpf ranger]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; metagear = derive2 { name="metagear"; version="0.4"; sha256="0ww1j34600y99wyanj9ffg1019xqshb9c32wiqnsblyw8pq4va5f"; depends=[EBImage gWidgets gWidgetsRGtk2 hexView MASS Matrix metafor RCurl stringr]; }; metagen = derive2 { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; }; metaheur = derive2 { name="metaheur"; version="0.2.0"; sha256="1rr5mjx3v87alj7cl9hxldvhhbpkz1fzmymmkqv0hs65pny6gbqw"; depends=[doParallel foreach ggplot2 preprocomb reshape2]; }; metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="1.0.0"; sha256="1wzy5dnmrdfdj1386snjyisrbzbq8v4qsnq57l3wvkg1pgnz1vh2"; depends=[]; }; - metamisc = derive2 { name="metamisc"; version="0.1.8"; sha256="06dzjnrbxqkb0d0zcdxg8fyadsbq0f0fca4xifjz16yjz1047n5k"; depends=[ellipse ggplot2 lme4 metafor mvtnorm plyr]; }; + metamisc = derive2 { name="metamisc"; version="0.1.9"; sha256="0wjwx7ncplpchwbz0l4xmsmy0faj2wnqjxvxyi05992v3rjv4j8k"; depends=[ellipse ggplot2 lme4 metafor mvtnorm plyr]; }; metansue = derive2 { name="metansue"; version="2.1"; sha256="0mklpnb9m0pynz3x0fin003zz0n1v6i0fdcahny70y1yxiy5agcs"; depends=[]; }; - metap = derive2 { name="metap"; version="0.8"; sha256="06ny9zkilawdy0s8yiwhnygs3yppw89bbyf76zgdavykbzscz5lh"; depends=[lattice]; }; + metap = derive2 { name="metap"; version="0.9"; sha256="03vg0mb6q7j2z0pkxykbak0hcp6dcak7zxs1lw9hswz9kqrq5jhz"; depends=[lattice]; }; metaplot = derive2 { name="metaplot"; version="0.4.9"; sha256="1nbnyh03n1kkkl4v80nbbbnkrzs1a5ri210x9q4m2v87jrcikllw"; depends=[dplyr encode lattice magrittr rlang tidyr]; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; metaplus = derive2 { name="metaplus"; version="0.7-11"; sha256="05pkgw0zlq3q9mvdw2yxz9mxzqwq3c8q6cwvh87cigw1pf8y9an7"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; @@ -8358,28 +8470,29 @@ in with self; { meteoland = derive2 { name="meteoland"; version="0.7.1"; sha256="1nsn4z3gbkcdhgyn13fjcpsyb0lb85kiyy6fhirlnw63dwr56a2l"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; metricTester = derive2 { name="metricTester"; version="1.3.4"; sha256="1z4z8km1jr0azh2zxp1sffm5picc9y6w9yn68zr1axli0l64y3a0"; depends=[ape doParallel dplyr foreach geiger MASS picante plotrix spacodiR]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; - mets = derive2 { name="mets"; version="1.2.3"; sha256="1f1mqpzpvh5vb8b8w72q13jhk978bcvwipf4bx3kzzgsf6yfxk5s"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; + mets = derive2 { name="mets"; version="1.2.3.1"; sha256="0v6w2gy88mds9ynmlbdx67zhl61x71i9nj2km5wvzrn5kcn1500p"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; mev = derive2 { name="mev"; version="1.11"; sha256="0iqcslnchap8zh4s3bllqqb8z0klpzg2pn8ays1xk66lj5ywl390"; depends=[boot evd gmm ismev nleqslv nloptr numDeriv Rcpp RcppArmadillo revdbayes rootSolve]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; mexhaz = derive2 { name="mexhaz"; version="1.5"; sha256="0my53dg321xfbbkxawxcggnh5gw9qkliji5gsdb8m1fi37djd67w"; depends=[MASS numDeriv statmod survival]; }; - mfGARCH = derive2 { name="mfGARCH"; version="0.1.2"; sha256="08gkba5v8l0867rrxakn7js11v1yj7qp9vmzbjmri9hjcm02s44a"; depends=[numDeriv Rcpp zoo]; }; - mfe = derive2 { name="mfe"; version="0.1.0"; sha256="06x6csf3pr1vdmmimg6f7iffrivj8wcdfafvld7nrzbkl09cbfbn"; depends=[C50 class e1071 infotheo MASS rpart]; }; + mfGARCH = derive2 { name="mfGARCH"; version="0.1.5"; sha256="0p7cnizhf1cgkzhja74p257k31hb6b7y4qnn3k9yawscdmg3zy50"; depends=[numDeriv Rcpp zoo]; }; + mfe = derive2 { name="mfe"; version="0.1.1"; sha256="0z9ddkck1z14b9cwvaam0xh869lh2fsjm1d3i8giyrcry0vvpp61"; depends=[cluster e1071 infotheo MASS rpart rrcov]; }; mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; mfx = derive2 { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; }; mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="1.0.1"; sha256="0bdj890v2rinsddny8kwa48cgqh9qlzfd7k5s4i9mg40ajr0f291"; depends=[MASS SDMTools]; }; - mgcv = derive2 { name="mgcv"; version="1.8-23"; sha256="1lsrhf1yzn25pfn3f5x8yxjqnfryim4jx3iqd7ah8aalh5asqwbp"; depends=[Matrix nlme]; }; + mgcViz = derive2 { name="mgcViz"; version="0.1.1"; sha256="1vv76cmfva1lsi921i337m44m9vykfp4rb9xidxww8dk3i9agg97"; depends=[colourpicker data_table dplyr GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI mvnfast plotly plyr qgam rgl rstudioapi shiny viridis]; }; + mgcv = derive2 { name="mgcv"; version="1.8-24"; sha256="15b76m1f0hz8dbmj9shqvslihdx5b7c48vck9grj5xs1z2y45r9c"; depends=[Matrix nlme]; }; mglR = derive2 { name="mglR"; version="0.1.0"; sha256="1b7nd913d4a1szgw2qnhlnjqhfxr95xag6jwjcb2wnnxd12lib7n"; depends=[biomaRt dplyr gdata ggplot2 gplots magrittr stringr]; }; mglmn = derive2 { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; - mgm = derive2 { name="mgm"; version="1.2-2"; sha256="0n0db6np7i0lycvis9pc1bsnzam4nrr9qzlwimz7d8pp7gm313xn"; depends=[glmnet Hmisc matrixcalc stringr]; }; + mgm = derive2 { name="mgm"; version="1.2-3"; sha256="066k5z99dssp9w5iav68mka68li1r7f5x2qbp21gnc89syrsqwnw"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; mgraph = derive2 { name="mgraph"; version="1.03"; sha256="0av2c0jvqsdfb3i0s0498wcms0n2mm0z3nnl98mx2fy7wz34z8b2"; depends=[rgdal]; }; mgsub = derive2 { name="mgsub"; version="1.5.0"; sha256="03w40vs3vfyrksnzbawyvp02kwrmn7cqhlv6xhfzfbh8jmz55wvr"; depends=[]; }; + mgwrsar = derive2 { name="mgwrsar"; version="0.1"; sha256="13h56fgq3fs28fqh19hwbcza622xd921qnjwcgw2rjwaabqz70w5"; depends=[doParallel foreach htmltools leaflet Matrix nabor Rcpp RcppEigen sp spgwr]; }; mhde = derive2 { name="mhde"; version="1.0-1"; sha256="1q7lbj2is024f5rmfpdn3a0hsb78bf62ddal3chhnh3bi1z3jrjk"; depends=[]; }; mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; }; mht = derive2 { name="mht"; version="3.1.2"; sha256="01zcaf9k0qayzm8dn5dvnm5n3qgqpj8r96qhqaa5vbjcr6ci2x2r"; depends=[glmnet Matrix]; }; mhtboot = derive2 { name="mhtboot"; version="1.3.3"; sha256="1z0p8ny9lpnrshgas7cad2lv7j0blw0n6ihiimw600n70h73jwrn"; depends=[ggplot2 reshape2]; }; - mhurdle = derive2 { name="mhurdle"; version="1.1-7"; sha256="06ph0vbm7yk5388v2aww6nmi2rhjhfjj1hl506a41m5k6hf746pk"; depends=[Formula maxLik survival texreg truncreg]; }; mi = derive2 { name="mi"; version="1.0"; sha256="1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l"; depends=[arm Matrix]; }; miCoPTCM = derive2 { name="miCoPTCM"; version="1.0"; sha256="1lmf6zahfp59ylhdp2cbr7y3vayhim72zazimg4qfld4r9d6kygc"; depends=[distr MASS nleqslv survival]; }; miLineage = derive2 { name="miLineage"; version="2.1"; sha256="0660vk44ywmj0q2cw7pa2z1r039ncw693dnz7zlgc0ipwak3b0ry"; depends=[data_table geepack MASS]; }; @@ -8391,14 +8504,14 @@ in with self; { micEconCES = derive2 { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[car DEoptim micEcon minpack_lm miscTools systemfit]; }; micEconIndex = derive2 { name="micEconIndex"; version="0.1-6"; sha256="1ihly6qpyg1pms4nkvs6khxxqwr3fwg57i8pg0yhyy1apqxyj2xl"; depends=[miscTools]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[MASS miscTools systemfit]; }; - mice = derive2 { name="mice"; version="2.46.0"; sha256="1gjvlk67zvgipfczsca8zqk97vg3sivv82hblsdwp14s7smhjcax"; depends=[lattice MASS nnet Rcpp rpart survival]; }; + mice = derive2 { name="mice"; version="3.1.0"; sha256="0xpn215yfzib4hw09cwilnyg9zbvq460njavfvm84mvgwbm25byi"; depends=[broom dplyr lattice MASS mitml nnet Rcpp rlang rpart survival]; }; miceExt = derive2 { name="miceExt"; version="1.1.0"; sha256="07xj9f5w0kh4d1yj8mx1jydvhd0vwpvvrb6h67xz5gb1ban4k6c6"; depends=[mice RANN RANN_L1]; }; - miceFast = derive2 { name="miceFast"; version="0.1.0"; sha256="0089n3iagy81b6k9kdm6rh2k21vi55ly4a5d4b4snhf0rxrj7if8"; depends=[Rcpp RcppArmadillo]; }; - miceMNAR = derive2 { name="miceMNAR"; version="1.0"; sha256="1ns7i1p2nil2s7960hkfl557qipwshibsgpwyn58ss3ch1vr213g"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; }; - miceadds = derive2 { name="miceadds"; version="2.10-14"; sha256="1cpwf8j1r5k5wb4cwjz0aqrsgb5x9nhdrxb22sfw3lrfc1x6i6ay"; depends=[CDM lme4 MASS mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; }; + miceFast = derive2 { name="miceFast"; version="0.2.3"; sha256="0ngb2qs71x0i8ffyb1qlbz2wk6c87m1r74l547c5pc9agnc227m0"; depends=[Rcpp RcppArmadillo]; }; + miceMNAR = derive2 { name="miceMNAR"; version="1.0.1"; sha256="1f9cikqcyj5hh8ray2bx8yhhvv378vsk5d6k7hl44c54qgna61cf"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; }; + miceadds = derive2 { name="miceadds"; version="2.13-63"; sha256="1a4d0bvvc2w9d6zp8pxrcgsn8jrydbkl5wwafm6zak54z6rsipj4"; depends=[CDM coda lme4 MASS mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; }; micemd = derive2 { name="micemd"; version="1.2.0"; sha256="0l4qzhkxy43xwgfqp2c638fimixdrm94hgiabfds3sc1vbxma4r8"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; }; micompr = derive2 { name="micompr"; version="1.1.0"; sha256="0qsxs35mmqx8hpszcb1z87xczh0vh0m0plqrj22af5mjjvif76n9"; depends=[]; }; - microPop = derive2 { name="microPop"; version="1.3"; sha256="072qldi020m84j9crfvzvw2nzn5fagqmjjzb7g7i70zwqhl1kjsa"; depends=[deSolve]; }; + microPop = derive2 { name="microPop"; version="1.4"; sha256="0dfqn7g445w4nydklvsq5vlkiin6kcz8kkazj7jfbm98ikdywzm8"; depends=[deSolve]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; microbenchmark = derive2 { name="microbenchmark"; version="1.4-4"; sha256="0fv2w2vsiz18imf4115nd9chhmf275w2mb49pn7pkxi6z3bamc9c"; depends=[]; }; microclass = derive2 { name="microclass"; version="1.1"; sha256="0hl2s4135k187f0vqmj9snvmnwa5k9fg8ahivfs7ciknrcxfv3nk"; depends=[microcontax microseq Rcpp RcppEigen RcppParallel]; }; @@ -8407,8 +8520,10 @@ in with self; { micromap = derive2 { name="micromap"; version="1.9.3"; sha256="1iciwy0kcg4qa0xc4gkqcilq33ac1s184vw13cbbkv0d1b5cgkgv"; depends=[ggplot2 maptools RColorBrewer rgdal sp]; }; micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; micropan = derive2 { name="micropan"; version="1.2"; sha256="1b3hd5c6l9njns372zhqfryibrpqmrjxmc1p5gzdwm7450cs7qky"; depends=[BH igraph microseq Rcpp]; }; - microplot = derive2 { name="microplot"; version="1.0-38"; sha256="1jrm0rzq8xwrd3j1xwyy70071jk9cxqnqdbr3ljjn926yji10nfs"; depends=[cowplot ggplot2 HH Hmisc htmltools lattice ReporteRs]; }; + microplot = derive2 { name="microplot"; version="1.0-39"; sha256="191rgmcq405c91dv0zk7in2r71n8d1m04w624950ykq6qhdjpmpp"; depends=[cowplot ggplot2 HH Hmisc htmltools lattice ReporteRs]; }; + microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.2"; sha256="1wddf09p803hi28kzn6sq86zhgldxi34rrj7c0bpzy476abnp45s"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; microseq = derive2 { name="microseq"; version="1.2.2"; sha256="1h828iviraqrm43lhd0s3r7rdlakc6yfc6ngrcrkacpflfcmx3c7"; depends=[Rcpp]; }; + microsynth = derive2 { name="microsynth"; version="1.0.9"; sha256="06k7lag0vlzhrq5x6h7m8q9n209hfal3dzzmpjgxb6i9xdigkr6h"; depends=[boot kernlab LowRankQP MASS nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; midasr = derive2 { name="midasr"; version="0.6"; sha256="1sg6m36jg3b6znfg97ln5a6b4z36xkyjvgxk7wmqdq3h528z8613"; depends=[forecast MASS Matrix numDeriv optimx sandwich]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; @@ -8421,10 +8536,11 @@ in with self; { mime = derive2 { name="mime"; version="0.5"; sha256="0i91m3ivaja1k33jwcvz16pfjypkci27awm8glil7sxhmwaj3izw"; depends=[]; }; minPtest = derive2 { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[Epi scrime]; }; mindr = derive2 { name="mindr"; version="1.1.0"; sha256="102r7m6jiadgmkw4w7535ba2qfxknj00y4b9hhawcjqm5v67jipz"; depends=[htmlwidgets]; }; + mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; minerva = derive2 { name="minerva"; version="1.4.7"; sha256="19snlbnk4y0lj7kfypa2g1d1s7bl3xkrxabn8p15hlwwcfb0x7vm"; depends=[]; }; miniCRAN = derive2 { name="miniCRAN"; version="0.2.11"; sha256="1ffc367ipcxyk2a8f2y46xa01rbr5254cryf1qzzfflb3xj8n6pa"; depends=[httr igraph XML]; }; - miniGUI = derive2 { name="miniGUI"; version="0.8.0"; sha256="1iq52x7wbcin7ya207jj3k9vym7mavm5z61vggyabdmr768pci39"; depends=[]; }; - miniUI = derive2 { name="miniUI"; version="0.1.1"; sha256="1qfca55phw6614qh5ligvqawpyvpb08x7ky44sffwxgff4h074lw"; depends=[htmltools shiny]; }; + miniGUI = derive2 { name="miniGUI"; version="0.8-1"; sha256="0qb2fbkjwzn909yrk89d4951bwf8n05i0s265l8v2d4lpns9hc2i"; depends=[]; }; + miniUI = derive2 { name="miniUI"; version="0.1.1.1"; sha256="1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"; depends=[htmltools shiny]; }; minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; minimap = derive2 { name="minimap"; version="0.1.0"; sha256="0y5yzic9pwpzs01gnl82syankijcjp85n22jn5zda0bp3y01r53r"; depends=[]; }; minimax = derive2 { name="minimax"; version="1.0"; sha256="1g0d9q5h1avbb0yg7ajw5330820i3n5cgkpsif754l4j3ikya8p3"; depends=[]; }; @@ -8435,8 +8551,8 @@ in with self; { minque = derive2 { name="minque"; version="1.1"; sha256="1hx4j38213hs8lssf9kj5s423imk7dzv60mdbzrpbp7la7jk2n57"; depends=[klaR Matrix]; }; minval = derive2 { name="minval"; version="0.8-1"; sha256="11sr69hmqnh5g2zbfajy3wqc57759basky1w72dnrd38rq50llxs"; depends=[]; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; - mipfp = derive2 { name="mipfp"; version="3.1"; sha256="18cfv8s38cd0g1wc5pry6a4m2ykqflkxhqbqnjbjvmr42bj3r6sp"; depends=[cmm numDeriv Rsolnp]; }; - mirt = derive2 { name="mirt"; version="1.27.1"; sha256="0344gqyx8x0q5smi8ifs6dw0hgqgw23mfgw8cb9gc8ky78zydjpp"; depends=[Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; + mipfp = derive2 { name="mipfp"; version="3.2"; sha256="1mds51vkqs2jc5kvxhzh2dmazxgbc14ahg1lxs9mn82my2p743f8"; depends=[cmm numDeriv Rsolnp]; }; + mirt = derive2 { name="mirt"; version="1.28"; sha256="1ykki146wgdb0smdly0b2hqzvk7b31xmd1kgw69505mbm49yhzvh"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.7"; sha256="038jp680hn17q8hcz346j4i0p913h7gbkqfswn0ygf1kwgsz1mpa"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; misc3d = derive2 { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-4"; sha256="1kvkbvrmaqclwdfghkrsmnzb6xbi97icay2wwb7k5m34xhx4ha82"; depends=[MASS MCMCpack mvtnorm R2jags]; }; @@ -8450,38 +8566,39 @@ in with self; { misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; missDeaths = derive2 { name="missDeaths"; version="2.5"; sha256="0pslssgf580zd0dd7m0l97bzgxnywj2qac0agxv6ih1a0xlxz874"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; - missMDA = derive2 { name="missMDA"; version="1.11"; sha256="185ia5zg5gdrkjpj5sql46lz5svw77wjy9zplpqhrmgx43fv0w0i"; depends=[FactoMineR mice mvtnorm]; }; - missRanger = derive2 { name="missRanger"; version="1.0.1"; sha256="0rab8b0fankymfhnz4f5g2hh2yq30h6cdblvz2d43i46d147js41"; depends=[FNN ranger]; }; + missMDA = derive2 { name="missMDA"; version="1.13"; sha256="1jzhl7j506wm2s71mn3kp0ij22z0h3pra4q552s30kv48gdk8h0w"; depends=[FactoMineR mice mvtnorm]; }; + missRanger = derive2 { name="missRanger"; version="1.0.3"; sha256="00gcnpvvy65v6k5qjk6xavdis02l8s9a56vwi39kw0rw8yhkla73"; depends=[FNN ranger]; }; mistat = derive2 { name="mistat"; version="1.0-5"; sha256="1vyx918b7iv1wcnk23bnlxljwy0hglpdx5drhrs5qcd45f6jrghc"; depends=[]; }; mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; mitml = derive2 { name="mitml"; version="0.3-5"; sha256="1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive2 { name="mix"; version="1.0-10"; sha256="0z16ddbh79kqxi64bl1h2sd8anpgc48n9d1nyr2zlln39nhv8w8g"; depends=[]; }; - mixAK = derive2 { name="mixAK"; version="5.0"; sha256="1lb3ivcl64vny21gifll6sc2yaf970mvb1hwlch1k49125ybxz5q"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; + mixAK = derive2 { name="mixAK"; version="5.1"; sha256="0i9gp66d1mzskiif0bk0w88cinc923fsj4vi7pv0im2cwmxksiiq"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; mixEMM = derive2 { name="mixEMM"; version="1.0"; sha256="0344ay1avi37kvh5w9bknayx67yh7rflj6zhw68d2888v7cbghjy"; depends=[]; }; mixKernel = derive2 { name="mixKernel"; version="0.1"; sha256="0p0m081ivpc22z3p8308z12fcdjnid86niwk4i97dvz12dr8v9ws"; depends=[corrplot ggplot2 LDRTools mixOmics phyloseq psych quadprog]; }; - mixOmics = derive2 { name="mixOmics"; version="6.3.1"; sha256="0bvlbxx94mxsqjwlc5pgxw8c6k32fzrv1ab2xc5zl3ag1v3g10qq"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats plyr rARPACK RColorBrewer reshape2 rgl tidyr]; }; + mixOmics = derive2 { name="mixOmics"; version="6.3.2"; sha256="1lqhrgsfdlv1ji965zf9ndg6ngylbmqahcslwirwd5vrjvlbzjb2"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 rgl tidyr]; }; mixPHM = derive2 { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; }; - mixR = derive2 { name="mixR"; version="0.1.0"; sha256="16rl1ggavs1qfq4i3jm85acd0w2zbiacnvnnim3vi3kqa9i09byy"; depends=[ggplot2 Rcpp]; }; + mixR = derive2 { name="mixR"; version="0.1.1"; sha256="1xd3v5rk59380zh7r6l5blmcy4gib9xp44j5dcrk6ivs6fgycsxh"; depends=[ggplot2 Rcpp]; }; mixRasch = derive2 { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; }; mixcat = derive2 { name="mixcat"; version="1.0-3"; sha256="0xszngygd3yj61pvv6jrrb5j0sxgpxzhlic69xrd5mv5iyw0cmxd"; depends=[statmod]; }; - mixdist = derive2 { name="mixdist"; version="0.5-4"; sha256="100i9mb930mzvdha31m1srylmpa64wxyjv6pkw1g5lhm1hsclwm3"; depends=[]; }; + mixdir = derive2 { name="mixdir"; version="0.1.0"; sha256="0kr82g7s9vp3i1vyqfpn30avdxg86xh0hgngbqmm5l2brd5sa4wx"; depends=[extraDistr Rcpp]; }; + mixdist = derive2 { name="mixdist"; version="0.5-5"; sha256="1wchhysd33xz395hq4wgd3zv1qc92pbiqxqd7g2v6m1pb0j8ma9g"; depends=[]; }; mixedMem = derive2 { name="mixedMem"; version="1.1.0"; sha256="0j8w3qfhanyrkkxipdxfdajv15qba8r2rm06iiv3kywficzgkxgv"; depends=[BH gtools Rcpp RcppArmadillo]; }; mixedsde = derive2 { name="mixedsde"; version="4.0"; sha256="1hryscff4i4ayqxv9imnx4g56497s1s95fzqv8wkwcpfcqi20bqf"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.5"; sha256="0nbf10xhrr51rb1b2apcj4p3ci8xbi7flgz500ar3mxh8h8l74sq"; depends=[daewr gdata lattice]; }; mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; }; mixlm = derive2 { name="mixlm"; version="1.2.3"; sha256="0i7nrn31yaicdpwfssnid1x8w51iv17lcl96zfr1pgrf97d7gkqd"; depends=[car leaps multcomp pls pracma]; }; - mixor = derive2 { name="mixor"; version="1.0.3"; sha256="1qnrfd0hggad81rn8ryfm9l0cpd59ifj9sxc1bav35bma535azdv"; depends=[]; }; + mixor = derive2 { name="mixor"; version="1.0.4"; sha256="1l296z0a3kamb1m94pfx3vczp36pa0np101fy5c23kh45s59pbs7"; depends=[survival]; }; mixpack = derive2 { name="mixpack"; version="0.3.6"; sha256="0q19mal86qlriwilabgy3sn33iymi5hl3wa33kvb8cd1dgdmjr7a"; depends=[mvtnorm Rcpp RcppArmadillo]; }; mixreg = derive2 { name="mixreg"; version="0.0-6"; sha256="04g863yxrlj0wqsmzzxph5110g3gjk094r59zzk0b9r89m8vhpsl"; depends=[]; }; mixsep = derive2 { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; }; - mixsmsn = derive2 { name="mixsmsn"; version="1.1-4"; sha256="1y15qjh6qzx3aqlv4pndmgk2mgkqpyxcd76ykn31qd8mwzddci9d"; depends=[mvtnorm]; }; + mixsmsn = derive2 { name="mixsmsn"; version="1.1-5"; sha256="0y1ysh75xqsqk87717akiqi8p6varry8n92hanl4qwy7la0ksy7w"; depends=[mvtnorm]; }; mixtNB = derive2 { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; }; mixtools = derive2 { name="mixtools"; version="1.1.0"; sha256="13wdm0xs5bakhpa8ypg6lvhjaqkxyabwz4glxdwn0jwdvkcdhgsl"; depends=[MASS segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.3.2"; sha256="0mdnp1yrcxvan5l7jj91s41vq5y1kdnkhhinqrklmg4ph5f29dmq"; depends=[minpack_lm]; }; mixture = derive2 { name="mixture"; version="1.5"; sha256="1ahr8jw93xnd5hmy3h4sr209ql7gmkwbvnnfmiplbpc17czqgcn4"; depends=[]; }; mize = derive2 { name="mize"; version="0.1.1"; sha256="18mnpwwbwlyx0ixsjqai28ahp4g0wncv8c5qwy17xq2zbhwlq3jh"; depends=[]; }; - mizer = derive2 { name="mizer"; version="0.4"; sha256="0ir6hx3fb4lkfgg7dln96fd50fr4jdrxbqp70461fsyzi3lxn6nv"; depends=[ggplot2 plyr Rcpp reshape2]; }; + mizer = derive2 { name="mizer"; version="1.0"; sha256="0qsf3wd8ipql344i8brv1d7qbr9g5y0qhh00lxj9n8sgjg52x7a5"; depends=[deSolve ggplot2 plyr progress Rcpp reshape2]; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; mkin = derive2 { name="mkin"; version="0.9.47.1"; sha256="1cz6f9122im594dvqdmdm9yjlnmwzrx2ka63dgj0zf1ysqzf0872"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; @@ -8491,58 +8608,59 @@ in with self; { mlVAR = derive2 { name="mlVAR"; version="0.4"; sha256="08iaq6wq0ngd60nhmlj8c0x8r1fal1zfv2zpd6ll54szcvdbxahr"; depends=[abind arm clusterGeneration corpcor dplyr lme4 MplusAutomation mvtnorm plyr qgraph]; }; mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; - mlbgameday = derive2 { name="mlbgameday"; version="0.1.1"; sha256="01jb2fiv847jfdl18g2b3xlihfbry2j2r9ajmw8gd82052ayyk1j"; depends=[DBI doParallel dplyr foreach iterators magrittr purrr stringr tidyr xml2]; }; + mlbgameday = derive2 { name="mlbgameday"; version="0.1.2"; sha256="03mz88y29wkn3510p8kzhapx0gj0mkqf0bgcjc0jpph2r1020c9a"; depends=[DBI doParallel dplyr foreach iterators magrittr purrr stringr tidyr xml2]; }; mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.4.0"; sha256="1nx21yyxfaiyxpbjkc5sif6pis5v2skisxcxdqk4479h54qzwlj3"; depends=[circlize shiny XML]; }; mldr_datasets = derive2 { name="mldr.datasets"; version="0.4.0"; sha256="0kbfaf39vkhvscw47bkx2mmc6cmgwz1cys62iiw3yb6kvkzddr3s"; depends=[]; }; mle_tools = derive2 { name="mle.tools"; version="1.0.0"; sha256="02yndj1if31zr9y805mq5km5n8jz4w9jz1bmaz9nnqsqimrnigrb"; depends=[]; }; + mleap = derive2 { name="mleap"; version="0.1.2"; sha256="1622pnbdkx5dig87srir2bxqk99lvnm2qln2wcsmhpf9jvp2vqf9"; depends=[digest fs jsonlite purrr rJava sparklyr tibble]; }; mlearning = derive2 { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; }; mlegp = derive2 { name="mlegp"; version="3.1.7"; sha256="1q0mxvr23qcxvf8k2cgs4m8yfp1gbkmprp964w8viy30japmx16l"; depends=[]; }; mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; - mlf = derive2 { name="mlf"; version="1.2"; sha256="1k2vplsqnccf5ymf50hgl4ly3np7n87ympd3aajpfwcn3jljbxkf"; depends=[]; }; + mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; mljar = derive2 { name="mljar"; version="0.1.1"; sha256="1mw45aqjwklsnrfwf8656jf30miyrlxpz87z97nkv9i135yhwfx3"; depends=[httr jsonlite readr]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-6"; sha256="0mvmahnbbp478xwldj4wlsjib4v4afhs07643gxgcqpi56zbd5h7"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="4.0-1"; sha256="0pk2h4m74r95dfkqzliixi6z1rwdfc6gbz8c3162y22m919f00vc"; depends=[car gplots lme4]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; - mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.2"; sha256="1zxmiqsn3rcs0a6w785smx8ifa10083vakawy3c59pa8zigii1xp"; depends=[coxme Matrix multcomp multcompView sommer]; }; + mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.3"; sha256="0k0q7l0dja6q5jl4p7fd16c95m83db8c7g34lnaymxll824ai1lq"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; - mlogit = derive2 { name="mlogit"; version="0.2-4"; sha256="15ndly7i56k8blgvpn15ixxnqx9yvbci7n3mb3hm9mnrxwh5v7sx"; depends=[Formula lmtest MASS maxLik statmod zoo]; }; + mlogit = derive2 { name="mlogit"; version="0.3-0"; sha256="0frggwb1yzfs229ys60qc4acfnq2zwjr6a1zb4fv07s1zlwrvnf1"; depends=[Formula lmtest MASS maxLik statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; mlr = derive2 { name="mlr"; version="2.12.1"; sha256="0b68pgx55f19i3pnci1n87cq2a7kfs6s2248zs1vg4xl5sw9ifww"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlrCPO = derive2 { name="mlrCPO"; version="0.3.2"; sha256="1wnh0ljh7739qcrgkgnf40xwkih0bmvpvykaaw51rascy63mf003"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; - mlrMBO = derive2 { name="mlrMBO"; version="1.1.1"; sha256="1r6p5ph7nyqs6cqqsg04mass1zppys75n8448lv6iadlm499jzg8"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; + mlrCPO = derive2 { name="mlrCPO"; version="0.3.4"; sha256="126kbfgcaqlvrpmz7v1l391x4v8sfzw7ccimz341im6n9ygp43rp"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; + mlrMBO = derive2 { name="mlrMBO"; version="1.1.2"; sha256="1ziyiycgwr4vgilji8dkf1c0kyqjnbmqi3qj35q3si2xbnmcm14f"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; }; - mlt = derive2 { name="mlt"; version="1.0-0"; sha256="0vbja0sxjg3a5gpa8wwnj1fvr8kkvkpzhim6lssvyy7kcb44fcya"; depends=[alabama basefun BB coneproj numDeriv sandwich survival variables]; }; - mlt_docreg = derive2 { name="mlt.docreg"; version="1.0-0"; sha256="1shhf5pk90cfia51a0qnbg8pvvv5n86d3mjy961rjs1wj30vj3yd"; depends=[mlt numDeriv]; }; - mltools = derive2 { name="mltools"; version="0.3.4"; sha256="18dxhims684a6fk44nrzdnry8dpxs69wim8kd7zamp8zdhy38kyy"; depends=[data_table Matrix]; }; + mlt = derive2 { name="mlt"; version="1.0-2"; sha256="0yc1dij3q6nk15259mvl5bhnm9b70ix8nq5lniq40j1arh5v9nq0"; depends=[alabama basefun BB coneproj numDeriv sandwich survival variables]; }; + mlt_docreg = derive2 { name="mlt.docreg"; version="1.0-1"; sha256="140bi0kjz5m7amwdxm2mpqn04i5wb1yjviwv34f1qjpzi4walml3"; depends=[mlt numDeriv]; }; + mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; mlvocab = derive2 { name="mlvocab"; version="0.0.1"; sha256="0lv9aqrwm00jdklig80yi5lxj87sh6ysg7qkg0kf1nv05lkvrpb0"; depends=[digest Matrix Rcpp sparsepp]; }; mlxR = derive2 { name="mlxR"; version="3.3.0"; sha256="0qbhmxmsyqfc2csk96qwizpjj7yk35r85rr5xaqkyr72mjn2m3gh"; depends=[ggplot2 Rcpp XML]; }; mma = derive2 { name="mma"; version="6.1-0"; sha256="1rrnm7szlaly8klqgi8wdh5qvfx4kx5bkl1q2y9y6zjpxmb4zvi6"; depends=[car doParallel foreach gbm gplots plotrix survival]; }; + mmabig = derive2 { name="mmabig"; version="1.0-0"; sha256="1srrfk6dqqfc504w8rhrfag3lzsc55sw3ckkmgph6k8ss99zn285"; depends=[car glmnet gplots mma survival]; }; mmand = derive2 { name="mmand"; version="1.5.3"; sha256="1n0h7nia9jjc11g8417nfd3wsg4m3bmblm9bsjd0b52vqxhpxmzh"; depends=[Rcpp]; }; - mmap = derive2 { name="mmap"; version="0.6-15"; sha256="0p3dsq0vffb0x0i8xh8p1r0b2hwk4zfi6nbwsi3cyaj1m7dzm0fh"; depends=[]; }; + mmap = derive2 { name="mmap"; version="0.6-17"; sha256="1dh1i2v2pzhag8brc9c0z8vfs858rpbkg1xqqi4fi866w7g4lhxy"; depends=[]; }; mmapcharr = derive2 { name="mmapcharr"; version="0.1.0"; sha256="0szabsacbqm51jw4q4pg304vvgqsqna5c7q1sh3f54za6dddmyxw"; depends=[BH Rcpp]; }; mmc = derive2 { name="mmc"; version="0.0.3"; sha256="03nhfhiiadga8mcp33kj20g33v9n5i62fdqgi20h5p80g849k719"; depends=[MASS survival]; }; mmcm = derive2 { name="mmcm"; version="1.2-7"; sha256="11dgb8crz5pjpx66cxxzn4lg58jbaxxhfqlcw3hdp9wpvyqjh3sb"; depends=[mvtnorm OpenMPController]; }; mmds = derive2 { name="mmds"; version="1.1"; sha256="0f5qzkfhi7vg8vsd8r41idmbwrrgc7qzfnp81adms2yzrza17wrw"; depends=[]; }; - mme = derive2 { name="mme"; version="0.1-5"; sha256="07k1xagwpyzsrlc00y9xlaxcpwdhz55v567i7fzvqa96ical8nlf"; depends=[MASS Matrix]; }; - mmeln = derive2 { name="mmeln"; version="1.2"; sha256="1kcfq5y2fzsrbjyvh6dfp734ly7alj9vrjikzadlz33s7wjanh79"; depends=[]; }; + mmeln = derive2 { name="mmeln"; version="1.3"; sha256="0hx59pizd6sgryca7g26n2wa5rdi3zd059w7yz66981p6mi4a5dk"; depends=[]; }; mmeta = derive2 { name="mmeta"; version="2.3"; sha256="0hyxpph2hfjwiy95r0n3h64aab5ziqp2a8gmmpp6nyc77h638czb"; depends=[aod]; }; mmm = derive2 { name="mmm"; version="1.4"; sha256="1nydian004nldqhyw3x15w6qfml2gkjc0x8ii54faz563byjv3d8"; depends=[gee]; }; mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; - mmmgee = derive2 { name="mmmgee"; version="1.11"; sha256="0q7gf8r48vw4rxq7b848hcfz9iqw89sld4ra33n6kb2jqczv49xi"; depends=[Matrix mvtnorm]; }; + mmmgee = derive2 { name="mmmgee"; version="1.12"; sha256="083hv7g2cy2r9qkwc2fihglf4avsl1dsjyy74mj39gk1pss8mh6j"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; mmpf = derive2 { name="mmpf"; version="0.0.4"; sha256="1lskpnhqiimf7ch5xg5f0mpvhxy18a5w9daxpp4133vx1dydm4c2"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmppr = derive2 { name="mmppr"; version="0.1"; sha256="0fswkqcw0xkqd9gmqabb61i32zscp5jzfx0z43wq7mrlwynryylv"; depends=[expm reshape2]; }; - mmtfa = derive2 { name="mmtfa"; version="0.1"; sha256="113bpcb05i78y78byrdn9j45dfcar7q8z7qmlid8cl6b8cjv1vfz"; depends=[matrixStats mvnfast]; }; + mmtfa = derive2 { name="mmtfa"; version="0.3"; sha256="0qfszr6f10v27w1pfns78dyarznqryl4m1ppyqap7l8fc12sliky"; depends=[matrixStats mvnfast]; }; mmtsne = derive2 { name="mmtsne"; version="0.1.0"; sha256="1by0hrggla6idc1isnq072i1wfpw4x7id3hkg8l65gy8iycccd12"; depends=[]; }; mnis = derive2 { name="mnis"; version="0.2.7"; sha256="1yhhgrhsk3ww93vd29ipw16bkn16w0b2i7d46cb5bb5xs4s7vivd"; depends=[dplyr httr jsonlite Rcpp stringi tibble]; }; mnlogit = derive2 { name="mnlogit"; version="1.2.5"; sha256="0vwragk71hisz7dy4h5i6zl9yp6wvzwlnfyw2kprnd94y02laq63"; depends=[Formula lmtest mlogit]; }; mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; mnormt = derive2 { name="mnormt"; version="1.5-5"; sha256="1b34xxrnf35khsx82mhvmk96sgfr2flyasaah7qkb2976pwxay7z"; depends=[]; }; - mnreadR = derive2 { name="mnreadR"; version="1.2.0"; sha256="0ymkwbfrba5nnnvi3s52fdhzva7qd0b7ab75j1m0s2i546cbwv9l"; depends=[dplyr ggplot2]; }; + mnreadR = derive2 { name="mnreadR"; version="2.0.0"; sha256="0m8h4g43iwq2ri6y9xk68g2rrikxngqcpqy6jlva84gsxigbzbql"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; mobForest = derive2 { name="mobForest"; version="1.3.0"; sha256="0gzn3lyi9ph5dcrfbw4xs4rkf5ngf28abf1n8vap96fdhc6nmg88"; depends=[modeltools party sandwich strucchange zoo]; }; mobsim = derive2 { name="mobsim"; version="0.1.0"; sha256="077hw1162giwc90y5dvj9052i5hxdf2ii29m9q8ky028375dsd0f"; depends=[Rcpp sads vegan]; }; mockery = derive2 { name="mockery"; version="0.4.1"; sha256="1h8976rlwykpqrh2p6x3bcyxdhlhcwsi1wvkdk08k6hynbw877cm"; depends=[testthat]; }; @@ -8552,19 +8670,21 @@ in with self; { modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.1"; sha256="1dc04wrax73f6fzkl6ycsa3wzf5347h79ah3vy3m24f4hjncnffw"; depends=[geometry lpSolve]; }; modTempEff = derive2 { name="modTempEff"; version="1.5.2"; sha256="00xdvc0i3p8wq913giy44w0xz07sa4bdgqpi7pmpbv2c5wj30pk1"; depends=[mgcv]; }; + modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; }; modeest = derive2 { name="modeest"; version="2.1"; sha256="0l4y7yhkgsxycdd2lck0g8g6k2r059hwlrrcpl46md3rva4jgbnp"; depends=[]; }; modehunt = derive2 { name="modehunt"; version="1.0.7"; sha256="0qz9kmf1qfs2dr7kzm9l7ac0h5rvi3b9j9896p991sk4bcalsl0b"; depends=[]; }; - model4you = derive2 { name="model4you"; version="0.9-1"; sha256="13ask2hcrw2r6qq4yz6wm2nsj2iwinnn0w78lj11fdrsj5cymnqv"; depends=[Formula ggplot2 gridExtra partykit sandwich survival]; }; + model4you = derive2 { name="model4you"; version="0.9-2"; sha256="0bi69s4bxdqfkjg7ldg41a72vsvqi6ipzqhfbk5jhj7avfa990b9"; depends=[Formula ggplot2 gridExtra partykit sandwich survival]; }; modelObj = derive2 { name="modelObj"; version="3.0"; sha256="0wc67zsh26zyr7x9s229g2mppfk6g6z12j74zj2bdhk2m7i2x3zq"; depends=[]; }; + modeldb = derive2 { name="modeldb"; version="0.1.0"; sha256="1pb9vnviz0sy9cz2jns34j7fwadi0j250smixr840hjjvvgxyzwf"; depends=[dplyr ggplot2 progress purrr readr rlang tibble tidyr]; }; modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; - modelr = derive2 { name="modelr"; version="0.1.1"; sha256="1rqw0b583vp107zqp4h3wj51dvv4hb3wszfr1f5f48xassc53f95"; depends=[broom dplyr lazyeval magrittr purrr tibble tidyr]; }; + modelr = derive2 { name="modelr"; version="0.1.2"; sha256="09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a"; depends=[broom dplyr magrittr purrr rlang tibble tidyr]; }; modeltools = derive2 { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; moderndive = derive2 { name="moderndive"; version="0.1.1"; sha256="11xxklaqizlx36nyx3nzj9xkszg99qsmjqmr59z235h4wkrw8xg3"; depends=[assertive broom dplyr formula_tools janitor knitr magrittr rlang stringr tibble]; }; modes = derive2 { name="modes"; version="0.7.0"; sha256="185qjrmz2sj0l5931g4d3kx3jpgjn4rf4lln84h6g97prk1ykqmj"; depends=[]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; - modifiedmk = derive2 { name="modifiedmk"; version="0.1.2"; sha256="1ajllhv33sdqa6bdylb6hs68kkk75qa1abv6kmnfix9k2g0bqlxq"; depends=[]; }; + modifiedmk = derive2 { name="modifiedmk"; version="1.1.0"; sha256="08nyn1rh28rs9wpz9jvi4pyrhrlh4qaklkx4za0h027lv3086ja3"; depends=[boot]; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; modmarg = derive2 { name="modmarg"; version="0.9.2"; sha256="1clyfvn5k87nyh5cj4b0yi2zkavwvnirhlirxkzi8m2qijdl9vgh"; depends=[]; }; moduleColor = derive2 { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut impute]; }; @@ -8572,37 +8692,38 @@ in with self; { modygliani = derive2 { name="modygliani"; version="1.0"; sha256="01g96cdm4hgbsh6xsdfjg7vp7zb138sxwgv0msrlm27a6p4fcnlx"; depends=[]; }; moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; }; mogavs = derive2 { name="mogavs"; version="1.1.0"; sha256="0lhmwdv991bv7j8k066jr7ii94w60ydjpf5pzmv8jlblf3w2pr02"; depends=[cvTools]; }; - mokken = derive2 { name="mokken"; version="2.8.10"; sha256="1lh9gqjm13k7wfmff2vikc1qg7lqr4fagm3jiklr1pv9vgn4dnc3"; depends=[poLCA]; }; + mokken = derive2 { name="mokken"; version="2.8.11"; sha256="1dypdf5gdz0hr3izafzfknyqx2vbr1z77c4c7vqdygv2wzhwy5i1"; depends=[poLCA]; }; moko = derive2 { name="moko"; version="1.0.1"; sha256="1d1gyv44z8k196hfh8a9iccmlrwb42bj1xzabs07h306gpi9m73d"; depends=[DiceKriging DiceOptim emoa GenSA GPareto mco]; }; molaR = derive2 { name="molaR"; version="4.3"; sha256="1bzk7k6d1zbi0fhf9xwdg5mv7dcgajjbb6wxafx4nc2fjxhlldzi"; depends=[alphahull rgl Rvcg]; }; - mombf = derive2 { name="mombf"; version="1.9.6"; sha256="01qvgxiw0wqp7j4l1qkdy88fvmydz5il09k6nrblbq0sfjf0khmq"; depends=[actuar mgcv mvtnorm ncvreg survival]; }; + mombf = derive2 { name="mombf"; version="2.1.2"; sha256="1lbg91ih8djxv8brwzwpxwzpbnhl7p3rj585kagykknknq5r6csj"; depends=[mclust mgcv mvtnorm ncvreg survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; - momentuHMM = derive2 { name="momentuHMM"; version="1.4.0"; sha256="0dfnxq16a2hyy1a4w7v55f6mp62xhldwsj2v54yw4s2d21dqir4y"; depends=[argosfilter boot Brobdingnag car CircStats conicfit crawl doParallel foreach geosphere ggmap ggplot2 gstat LaplacesDemon MASS mitools moveHMM mvtnorm nleqslv numDeriv prodlim qdapRegex raster Rcpp RcppArmadillo sp survival]; }; + momentuHMM = derive2 { name="momentuHMM"; version="1.4.2"; sha256="02ia80h78msgb4c474h47cbd8n0j3bfrjcq4wl2937licdzfl43s"; depends=[argosfilter boot Brobdingnag car CircStats conicfit crawl doParallel dplyr foreach geosphere ggmap ggplot2 gstat LaplacesDemon magrittr MASS mitools moveHMM mvtnorm nleqslv numDeriv prodlim qdapRegex raster Rcpp RcppArmadillo sp survival]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; mondate = derive2 { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="1.5"; sha256="06qry561kdg4lxvdayghmhmgb94sqy16gxjp081xnmya0vqf9wjy"; depends=[jsonlite openssl]; }; + mongolite = derive2 { name="mongolite"; version="1.6"; sha256="0wam3sbf5p7d5ikvmf0z8cghk2lrw2c3qyh9pbffm62vdbq7wx86"; depends=[jsonlite mime openssl]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monkeylearn = derive2 { name="monkeylearn"; version="0.2.0"; sha256="18lpfs64h0hy4vkdjlnmxwgagvf54kn8a1c866vv00ckyp85fvn2"; depends=[cowsay digest dplyr httr jsonlite magrittr purrr ratelimitr tibble tidyr]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; monographaR = derive2 { name="monographaR"; version="1.2.0"; sha256="0sis2kw07ifq54w6p56zspmlnvxvq6ajb0sdvc9fk480sfxg9806"; depends=[circular maptools png raster rmarkdown sp]; }; monomvn = derive2 { name="monomvn"; version="1.9-7"; sha256="1bz967sl6ji84x9v0fypjn75d39naaqgvw31n9lgcd5lyj39hbsk"; depends=[lars MASS mvtnorm pls quadprog]; }; monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; }; - monotonicity = derive2 { name="monotonicity"; version="1.0"; sha256="0xpsn57lixw6pzf7qyp2x6az7vwbfw9bsd0yz93710pyyhkzr94b"; depends=[lmtest MASS sandwich]; }; + monotonicity = derive2 { name="monotonicity"; version="1.1"; sha256="06irf6jlmhmj70c45ilf66yy2k81i3rg1qgw9ch08mj1j8ahyx7x"; depends=[lmtest MASS sandwich]; }; monreg = derive2 { name="monreg"; version="0.1.3"; sha256="08rcg2xffa61cgqy8g98b0f7jqhd4yp8nx6g4bq3g722aqx4nfg3"; depends=[]; }; - moonBook = derive2 { name="moonBook"; version="0.1.3"; sha256="1wy8qwzymh482gfb4v9v74k666mq8dz2yird7gz43l3hps22kfgb"; depends=[nortest survival]; }; + moonBook = derive2 { name="moonBook"; version="0.1.8"; sha256="1gdzpjc16l2alvf968011njgl8i7fhi2l5v97b47dh4wlnziq68x"; depends=[nortest survival]; }; moonsun = derive2 { name="moonsun"; version="0.1.3"; sha256="1y8mwxmcy4iz444c2fayyi4i0jk1k561dp6cbjg2b3lmdml0whmi"; depends=[]; }; mopa = derive2 { name="mopa"; version="1.0.1"; sha256="1v876al1afli002v44b4j2acb6n66f0hzz4bmcl60jyny43d1n0c"; depends=[abind dismo e1071 earth gtools lattice PresenceAbsence randomForest ranger raster rpart sampling sp spam spatstat splancs tree]; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; - morse = derive2 { name="morse"; version="3.0.0"; sha256="18657cd3pqy170wapxy3jw4cc13710bf7ix07dss30gpkbvilyvl"; depends=[coda dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; - mortAAR = derive2 { name="mortAAR"; version="1.0.0"; sha256="0d599npgfk11mv39rk2a64vs5x31g4f7n1n13mzzzcy1lz5y1ih2"; depends=[magrittr Rdpack reshape2]; }; - mosaic = derive2 { name="mosaic"; version="1.1.1"; sha256="1c82im22sj0sfqnwwfg7kyp2dllj89f79by07220br5wpa18bsn7"; depends=[broom dplyr ggdendro ggformula ggplot2 glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; }; + morpheus = derive2 { name="morpheus"; version="0.2-0"; sha256="07gk05qpabbg96svgnp2m9sw3fxsh2mgfwyda423c03yhxn1pnsm"; depends=[jointDiag MASS pracma]; }; + morse = derive2 { name="morse"; version="3.1.1"; sha256="0j0h8jx3mx20dfdzzkn48amq5fc6mdfkb06fznqbyxrahdgwj5wg"; depends=[coda dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; + mortAAR = derive2 { name="mortAAR"; version="1.0.1"; sha256="1dgxx5sh0nskzbigr8yq389lsnalp45d6m92q6g07jpqm7nzbazd"; depends=[magrittr Rdpack reshape2]; }; + mosaic = derive2 { name="mosaic"; version="1.3.0"; sha256="1iaiddg81b49296jch45m9hlybv6iia5vkl2s6pkzjp2ii5yvf8k"; depends=[broom dplyr ggdendro ggformula ggplot2 glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; }; mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.0"; sha256="05s14rmgi15xcz50hcz7l26l95yx9g4i3kihzh0laz8bpi443i39"; depends=[MASS mosaic mosaicCore]; }; - mosaicCore = derive2 { name="mosaicCore"; version="0.4.2"; sha256="17yani6781znrrnrcji1q7h6y422bq443gzly0mm6yn8bj7v5qrc"; depends=[dplyr lazyeval MASS rlang tidyr]; }; - mosaicData = derive2 { name="mosaicData"; version="0.16.0"; sha256="09kp3d3h3xmz9fnjaz9nr1jldjd93gyq5gq9sk2a2ymgnbmbc5wm"; depends=[]; }; + mosaicCore = derive2 { name="mosaicCore"; version="0.6.0"; sha256="1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z"; depends=[dplyr lazyeval MASS rlang tidyr]; }; + mosaicData = derive2 { name="mosaicData"; version="0.17.0"; sha256="04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9"; depends=[]; }; mosaicModel = derive2 { name="mosaicModel"; version="0.3.0"; sha256="1gx4rzh0h922gyb50vz6q5vqqp5ry5hf2mq95948q2gcady91k5w"; depends=[caret dplyr ggformula ggplot2 knitr lazyeval MASS mosaicCore testthat tibble tidyr tidyverse]; }; - mosum = derive2 { name="mosum"; version="1.1"; sha256="0njpmb7mhgmaylfq1jgk198d6sc6r96kywbjpl2c465kvs8khc2f"; depends=[plot3D Rcpp zoo]; }; + mosum = derive2 { name="mosum"; version="1.2.0"; sha256="0r827f8zbh31hggwh7vrbji3mnjv85fhvwx69kgadlaxp8z0cq1y"; depends=[plot3D RColorBrewer Rcpp]; }; motmot_2_0 = derive2 { name="motmot.2.0"; version="1.1.2"; sha256="1hnpp2850yhvxki7pcwscg79knvxzs3gx4b19wza0wg3p02fvsb6"; depends=[ape caper coda MASS mvtnorm]; }; moult = derive2 { name="moult"; version="2.1.0"; sha256="0k0969fwy648x25xw42w5ncimyw2cbq305rzf4m77p3pf0k50m9b"; depends=[Formula Matrix]; }; mountainplot = derive2 { name="mountainplot"; version="1.2"; sha256="1bbgkps1yhfa0lmapqkhhl5mc63p0gzszxw2g910dbi1cjc0pphx"; depends=[lattice]; }; @@ -8610,7 +8731,7 @@ in with self; { mousetrap = derive2 { name="mousetrap"; version="3.1.0"; sha256="1r1cpfn6bcgk66lw0la6r3bsv62yhp2m3jkwn0g8rbwrhp9jyl6p"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; movMF = derive2 { name="movMF"; version="0.2-2"; sha256="0kk3b16vlr6nbqn9fzgk5pb4nyy9w9b5x7khyvn34b9r0pnqmmds"; depends=[clue skmeans slam]; }; move = derive2 { name="move"; version="3.0.2"; sha256="0pi59k2kq1z92qgsbbqn1cjx0rbkjzjhaskk76wv95s3078k062d"; depends=[geosphere httr raster Rcpp rgdal sp xml2]; }; - moveHMM = derive2 { name="moveHMM"; version="1.5"; sha256="16r0lp3lqnmplhagixyidgyg82zsxln22v9l9fgb07lxhszrs0rj"; depends=[boot CircStats geosphere ggmap ggplot2 MASS Rcpp RcppArmadillo sp]; }; + moveHMM = derive2 { name="moveHMM"; version="1.6"; sha256="1wz8yg87rxkq70hnahv1jd027938vl9g4wr9zvnq24vwc7hzdafz"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveVis = derive2 { name="moveVis"; version="0.9.6"; sha256="15w11zdi2amzvq7xgz5wsf9136s127inc44x8cl3ra7jy2sbgpiy"; depends=[dismo geosphere ggplot2 gridExtra lubridate maptools move pbapply plyr raster rasterVis RCurl RStoolbox simecol sp zoo]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.1"; sha256="020bl3i0i393dfknix03k8y70fjsf0lbw0mqrnhwsvz8kwrw3hi1"; depends=[move Rcpp]; }; mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; }; @@ -8625,32 +8746,35 @@ in with self; { mpmcorrelogram = derive2 { name="mpmcorrelogram"; version="0.1-4"; sha256="0gv9xswrfvndcjal0csab1w2cnl4rg8pznyxbz84b0qr95jg81ag"; depends=[vegan]; }; mpmi = derive2 { name="mpmi"; version="0.42"; sha256="1j7xsgz3pgbb7a4ykrcj22isbi5svqsxcckai05q7b401h1ppsnh"; depends=[KernSmooth]; }; mpoly = derive2 { name="mpoly"; version="1.0.5"; sha256="0yjh5nnrywxzgy24nlf5v8kq8nq10ccippzfjwf8hz7zzlxzhp5q"; depends=[ggplot2 orthopolynom partitions plyr polynom stringr tidyr]; }; + mppR = derive2 { name="mppR"; version="1.1.10"; sha256="09g4zj61mh1vlhzdki7cdmbdbz6fibc7rgci9bl5vpa2cs5b3yj1"; depends=[ggplot2 igraph qtl synbreed]; }; mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; }; mpr = derive2 { name="mpr"; version="1.0.4"; sha256="13fqvndwxzqa1safa43ad90pkiqnpqmgr0pkwp8lwmnxqmrmj0jb"; depends=[survival]; }; mpt = derive2 { name="mpt"; version="0.5-4"; sha256="01akz72z6z5ybzika120v4v6ah13hfynh98rzbmqgbchijxbbkz6"; depends=[]; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; }; mr_raps = derive2 { name="mr.raps"; version="0.2"; sha256="069vyvsdgc5m7n2fd0h7jrllz789zvsxka7h5wiy36dc7lagd6f8"; depends=[nortest]; }; mrMLM = derive2 { name="mrMLM"; version="3.0"; sha256="174d12dxrsndd8hkc4ivfa5wd7ixh3vkkvd1br5zm5rwxbq3c71l"; depends=[coin data_table doParallel foreach ggplot2 lars MASS ncvreg openxlsx qqman sampling stringr]; }; + mrMLM_GUI = derive2 { name="mrMLM.GUI"; version="3.1"; sha256="17rqky58im1aax29fi3lc6i7kpy3n35ysdhjz9dgmykzhx41xmn2"; depends=[coin data_table doParallel foreach ggplot2 lars MASS mrMLM ncvreg openxlsx qqman sampling shiny shinyjs stringr]; }; mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; - mratios = derive2 { name="mratios"; version="1.3.17"; sha256="0a2pn4234ri5likaqbxgkw8xqmwchr6fak3nninral0yzd4rcal5"; depends=[mvtnorm]; }; - mrbsizeR = derive2 { name="mrbsizeR"; version="1.0.1"; sha256="1gr8mx1byq8nw095yla4gn2ascgw4d90j7a3a3rzwfdavkjj7167"; depends=[fields maps]; }; - mrds = derive2 { name="mrds"; version="2.1.18"; sha256="0nhfyl5vcisb9z33sm37vfgnfkkmikr2wwvsjq84jaw2x2jmbxvz"; depends=[mgcv numDeriv optimx Rsolnp]; }; + mratios = derive2 { name="mratios"; version="1.4.0"; sha256="0pjcwqx3zykpwyykwgqziwignd41sjm2s1blyjwc1lhymis4ldzq"; depends=[mvtnorm]; }; + mrbsizeR = derive2 { name="mrbsizeR"; version="1.1.1"; sha256="0a69yyxxf4p84c2sx9kkaxgpfyck88cn0ajlnm64arrr9r99iiir"; depends=[fields maps Rcpp]; }; + mrds = derive2 { name="mrds"; version="2.2.0"; sha256="08m5a61rpbw5pv0v0yspihkzihcxazsh6w5kmfvg68s4akjwcnqi"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; - mrfDepth = derive2 { name="mrfDepth"; version="1.0.6"; sha256="1g3bv0vpalp54pgdrfbfa32bcrph0q4j5jp1m91f328hzyx2lrmj"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; - mrgsolve = derive2 { name="mrgsolve"; version="0.8.10"; sha256="0qanj35ppyiyhcyf2iqji68j00i1y47319mms96llwpcl039f37p"; depends=[BH dplyr lazyeval magrittr Rcpp RcppArmadillo tibble]; }; + mrfDepth = derive2 { name="mrfDepth"; version="1.0.7"; sha256="1v0d1vm7jihg88xd4hwi5j940r5kh74c3nidh6hyvajqq97nidjq"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; + mrgsolve = derive2 { name="mrgsolve"; version="0.8.12"; sha256="04k7mj64gqwnvwsshfn4l3iiqfbsy92qil14ysq4ncjj2h40lgkj"; depends=[BH dplyr magrittr Rcpp RcppArmadillo rlang tibble]; }; mri = derive2 { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; }; - mritc = derive2 { name="mritc"; version="0.5-0"; sha256="1344x7gc7wvmcqp0sydppavavvps5v7bs0dza2fr8rz3sn4as8sa"; depends=[lattice misc3d oro_nifti]; }; + mritc = derive2 { name="mritc"; version="0.5-1"; sha256="12sfyw5b1lryczl92xvyvhl37qfx3ybg4y9awsl0b7f51zi0lzy3"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; msBP = derive2 { name="msBP"; version="1.3-1"; sha256="0ziqzkylawc6kpcfzqwrwn6vp0562rd2yx5a4zg8p1n0y2gdpdzc"; depends=[]; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; msaR = derive2 { name="msaR"; version="0.3.0"; sha256="0lj9yhsissr4rgavyhgdxi2nrkq2088darzraisx9jsirjr49jf8"; depends=[ape htmlwidgets]; }; - msaenet = derive2 { name="msaenet"; version="2.8"; sha256="1293qdvn2qv3prnp4rwwndcjnzk49v565yfvzrvb9j7sqvjshf07"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; + msaenet = derive2 { name="msaenet"; version="2.9"; sha256="0jrrd49fmb8drrrz5g8gk3mwk1yczcm3v0c2939bqsjyd41830vr"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; mschart = derive2 { name="mschart"; version="0.2.3"; sha256="0lq2hhbwy3hycbvzhrhny7jk5cc4iq89a4mff5q2jjfff13vmm6g"; depends=[cellranger data_table htmltools officer R6 writexl xml2]; }; mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; + mscstts = derive2 { name="mscstts"; version="0.2.2"; sha256="1aa8pvg3immcrpr7b6q1lf4nm8gvq9316s28jvzpp2az5hvc1w00"; depends=[httr jsonlite]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; msde = derive2 { name="msde"; version="1.0.3"; sha256="18l5ca4s1ryyb9i0zsb03klm53f25klwyg171dqkn5z4bqwznp2m"; depends=[Rcpp RcppProgress]; }; @@ -8663,7 +8787,7 @@ in with self; { msir = derive2 { name="msir"; version="1.3.1"; sha256="1ipzgdffsqly3dp91pw7yp3h5cwn08l9qsj7cdmrykd42jc98950"; depends=[mclust rgl]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; msm = derive2 { name="msm"; version="1.6.6"; sha256="06m7fflb6lgjfnj9v4wjc63x2as8jvc24qmz6jvgm9fw7hnm24px"; depends=[expm mvtnorm survival]; }; - msma = derive2 { name="msma"; version="1.0"; sha256="1pq1m8hrvpfjh89wiz4f3jlzlp620clxzash5061zbhm0xjmxjpd"; depends=[mvtnorm]; }; + msma = derive2 { name="msma"; version="1.1"; sha256="15678v3vabafd22yh16ly90ll3r02lb93dsv0vm77j4if9626qbg"; depends=[mvtnorm]; }; msme = derive2 { name="msme"; version="0.5.3"; sha256="0mq57zdas1s87nblnvbif9lisgahfhvmabglvp9imr1mvpwybpbh"; depends=[lattice MASS]; }; msmtools = derive2 { name="msmtools"; version="1.3"; sha256="0p7xpj78cjc1s015ma7vc38kqiy6wvpyixrdinx4ngig1pqfrq4p"; depends=[data_table msm survival]; }; msos = derive2 { name="msos"; version="1.1.0"; sha256="1dlqmjz5f8h71334kzdjbzvkn0dhysp7fb18g45qqs79cqpf1vzf"; depends=[mclust tree]; }; @@ -8677,6 +8801,7 @@ in with self; { mthapower = derive2 { name="mthapower"; version="0.1.0"; sha256="17svh0q9a982a390fgwgvrc2kygxxgyacb3j6gcksbikjrvkcfpw"; depends=[]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; + muHVT = derive2 { name="muHVT"; version="0.1.0"; sha256="1lkqas8ghnkgdnnhjmm1aivgabnqgpd3hfk8i3z7bajvi201qvx4"; depends=[conf_design deldir Hmisc MASS plyr sp splancs]; }; muRL = derive2 { name="muRL"; version="0.1-11"; sha256="1pyspp1wpd80hcla1zwnl3misqggfk0ls54akwnx5aa617bibzz8"; depends=[maps stringr]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; @@ -8685,6 +8810,7 @@ in with self; { mueRelativeRisk = derive2 { name="mueRelativeRisk"; version="0.1.1"; sha256="16yclfmgxc32pv00vyb9fjdh4syax8ynizr8a29haiq22q5fqclh"; depends=[]; }; muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; + multDM = derive2 { name="multDM"; version="1.0"; sha256="06vjbsjmqdnndpqacfpgq5w8q6xg81s7vd9fhwdkww3adr7r8cg3"; depends=[]; }; multcomp = derive2 { name="multcomp"; version="1.4-8"; sha256="0fm78g4zjc6ank316qfw977864shmy890znn4fahwc8jjdhpc252"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive2 { name="multcompView"; version="0.1-7"; sha256="18gfn3dxgfzjs13l039l2xdkkf10fapjjhxzjx76k0iac06i1p7i"; depends=[]; }; multdyn = derive2 { name="multdyn"; version="1.6"; sha256="06yab2lmxp7lc7zjk8n194mn5vza0yjbp276iair3ry35my4h3v8"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -8695,11 +8821,12 @@ in with self; { multiCA = derive2 { name="multiCA"; version="1.1"; sha256="1vgb13cfq10g8hxykgi3is3mrlbm76vh40cznapl7xxmw226ccrl"; depends=[bitops multcomp]; }; multiDimBio = derive2 { name="multiDimBio"; version="1.1.1"; sha256="0b0lymnli7w91bfd67dsvzbj3flxsrsmbg4a18mzch0j9y6a40x0"; depends=[ggplot2 gridGraphics lme4 MASS misc3d pcaMethods RColorBrewer]; }; multiPIM = derive2 { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; }; - multiROC = derive2 { name="multiROC"; version="1.0.0"; sha256="0zb52g1s4km7gs6krmn3k76p4qywx4bjakfr5gs4s4x7ki3w3x43"; depends=[boot ggplot2 magrittr]; }; + multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; }; + multicastR = derive2 { name="multicastR"; version="1.0.0"; sha256="0gs5pbnf9jr7l1hi6dq54a2isx43gdvbxx0p354r060gddj2xwqd"; depends=[data_table]; }; multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; }; - multicmp = derive2 { name="multicmp"; version="1.0"; sha256="0cdb1jshrkx1n9a8p4xsa11n3z9g27qcibbc6wz3jcjykdqlwi0r"; depends=[numDeriv]; }; + multicmp = derive2 { name="multicmp"; version="1.1"; sha256="0mz7ksc5h6dy95l3kbsamm191372blhlrj573krc57bj93lmp1a5"; depends=[numDeriv]; }; multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-10"; sha256="1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v"; depends=[Rcpp]; }; multifluo = derive2 { name="multifluo"; version="1.0"; sha256="1blmr2cdbdwfyivvla0nmv2n44m168f3d11g5i7vydh8fl17l8vr"; depends=[ellipse imager]; }; @@ -8710,15 +8837,14 @@ in with self; { multilevel = derive2 { name="multilevel"; version="2.6"; sha256="19zrvpq23dn69d7kai1rgw5b8ibmgybnbg6isliq0n8bv9jvrzia"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multimark = derive2 { name="multimark"; version="2.0.1"; sha256="0d283gvzqmdwr1sxgfb5ir9zw0sahj1wph7izcy1h63h6qlci828"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; - multimode = derive2 { name="multimode"; version="1.1"; sha256="0dhzpvw71szyw454gi7460yr46j1vas109xgwyz9h6kwm6gi5ysn"; depends=[diptest ks rootSolve]; }; + multimode = derive2 { name="multimode"; version="1.3"; sha256="130sh1r92z7415j4liz7ka1lpq0b5dxwqdh8s2lnd0wyjz8ysh3k"; depends=[diptest ks rootSolve]; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; - multinet = derive2 { name="multinet"; version="1.1.4"; sha256="0zajynn9mkpaqb5a208g90pv14rfxbb6k8gh9xikj4a42g9ijjsp"; depends=[igraph Rcpp]; }; + multinet = derive2 { name="multinet"; version="1.1.5"; sha256="15zwwksyfacvlkwrbslr2rz108xb1qmq37r6zxk022hi9gkh4mnz"; depends=[igraph Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.0"; sha256="05m0xin8wxshmwb3b9cgsvi8037wvmirbyyim1xxx2ppfwrdr2a6"; depends=[igraph Rcpp]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; - multipanelfigure = derive2 { name="multipanelfigure"; version="0.10.7"; sha256="077pjjambyyz6z2a34vnzbwyx9imalhnca3yl6q6j7w12klis41h"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types caTools ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="1.0.0"; sha256="08vwz3d3gwybb1dzxhmzzik636k7y6dvrwkxpdsij7zw9p5gbbgs"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types caTools ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-1"; sha256="080wpyifpw41p6jip2ia7439jdhzyb7lbhs2qzzg0hn6c0qq7mrr"; depends=[mgcv survival]; }; multiplex = derive2 { name="multiplex"; version="2.8"; sha256="01l3kmvsrrq0c98dv5m25yjjcbc99in6dv9k5h54cyjsw4jsjhns"; depends=[]; }; - multiplyr = derive2 { name="multiplyr"; version="0.1.1"; sha256="0bsf2zhzqwl3skg26fm27j2wpifky0mph26acrlq8p72njkbcw4d"; depends=[bigmemory bigmemory_sri magrittr]; }; multipol = derive2 { name="multipol"; version="1.0-7"; sha256="1rkrg3kayxa05jayg8bk1mm3hcvi76570wqfja5953hd9j4krgha"; depends=[abind]; }; multirich = derive2 { name="multirich"; version="2.1.1"; sha256="04jr5jvds70j2psyxz12d2my61jcj5hvdyv10pvar2rpqaw0yxyh"; depends=[]; }; multiselect = derive2 { name="multiselect"; version="0.1.0"; sha256="1cda38zq7c1r56wdfpr5dg0jfw4kzi9p7jq59qm04j461j9ag3q6"; depends=[Hmisc]; }; @@ -8726,17 +8852,19 @@ in with self; { multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; }; multistate = derive2 { name="multistate"; version="0.2"; sha256="0jdgyzc99k4py39g98c4dlcdl918568ihcyhb7csxbsn1zn1qm9l"; depends=[date relsurv statmod survival]; }; + multistateutils = derive2 { name="multistateutils"; version="1.1.0"; sha256="1fpfmqwspvrhq4n02ha5vpaybnhg8ylqmixm2r2xrk2x3kq7733r"; depends=[data_table dplyr magrittr networkD3 Rcpp survival tidyr]; }; multitaper = derive2 { name="multitaper"; version="1.0-14"; sha256="04wd9bbhyx7697pfy0fpj02v1csr48hkpqj62h9p8a6w84ji4k68"; depends=[]; }; multivariance = derive2 { name="multivariance"; version="1.1.0"; sha256="1yl1qfckpf98j4ca3wv8zw8vd79isaqvq7qkakyhxy0ljx20jmlk"; depends=[abind igraph]; }; multivator = derive2 { name="multivator"; version="1.1-9"; sha256="0vbqvhmym46zjr1h4s53sjrddfjpv8wi0sq4lrh2rmqarq068416"; depends=[emulator mvtnorm]; }; multiwave = derive2 { name="multiwave"; version="1.2"; sha256="1bw071izjxrsk5gx8s49nrlryabpgpg7k2z1ghmk8p6i9m5apnl8"; depends=[]; }; - multiway = derive2 { name="multiway"; version="1.0-4"; sha256="0gzsxcmavyrsrkmiq7yr0jmxbyk91h9kk9w2gazqxddk2c8q4g2s"; depends=[quadprog]; }; + multiway = derive2 { name="multiway"; version="1.0-5"; sha256="0ni38h16nddwib9nvcby59rsn9913qwhrlkpdkz99fwz8cnl8rw2"; depends=[CMLS]; }; multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; multxpert = derive2 { name="multxpert"; version="0.1"; sha256="03mvf4m0kabm22vy4zkj1cfh884larpj8cbgg3p9l3pag20snf1l"; depends=[mvtnorm]; }; muma = derive2 { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; }; + mumm = derive2 { name="mumm"; version="0.2.0"; sha256="1dizjqi29cw2bpsr0i3a27mys2rs90yhbg1lc7a2nkg7lwqgb993"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; - munsell = derive2 { name="munsell"; version="0.4.3"; sha256="0jdxlbjslkzaqgp058da1cgm85qvqi09wpcgpvp4hvwnmy83qz1r"; depends=[colorspace]; }; - munsellinterpol = derive2 { name="munsellinterpol"; version="1.0.2"; sha256="1c4m9fhggczy3wk51m8qxiahkic1f1lq3r8b0x0mk34pd5wap48a"; depends=[geometry]; }; + munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; }; + munsellinterpol = derive2 { name="munsellinterpol"; version="2.0.1"; sha256="1pyqsgx2fhrh264yvg6ybkr4skksn1hlanh8950df1f77h70ji6i"; depends=[geometry rootSolve spacesRGB]; }; murphydiagram = derive2 { name="murphydiagram"; version="0.11"; sha256="0wax9gjhzz8nphzwijqzllz4y25jksf1vqfcbnfb7zafsfv40rib"; depends=[]; }; musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; }; musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; @@ -8745,12 +8873,13 @@ in with self; { mutoss = derive2 { name="mutoss"; version="0.1-12"; sha256="1yk7p7pb2xm38d3j19ysgwmix48lvimbhkhjjwk5jmr1a0ysx298"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; mvLSW = derive2 { name="mvLSW"; version="1.2.1"; sha256="012p828pyzz6xnv2akax5hx79v522dg4a2gqrjss526qylpg5j9l"; depends=[fields wavethresh xts zoo]; }; + mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; mvMORPH = derive2 { name="mvMORPH"; version="1.0.9"; sha256="09368vgyb1s18awfr07hs1s40n2h15hy08fmir3ayhdfrdain4k6"; depends=[ape corpcor phytools spam subplex]; }; mvMonitoring = derive2 { name="mvMonitoring"; version="0.1.0"; sha256="03nvq8nmrmrpzyxlsqzww5ghk640115l1jgmgwfahhjxkdpkzfxx"; depends=[BMS dplyr lazyeval plyr rlang robustbase xts zoo]; }; mvPot = derive2 { name="mvPot"; version="0.1.4"; sha256="04l9dn8amwp366b6lic5fkl4kck0x2m3xcsqz6as4c3h772nhq1w"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-8"; sha256="07dizclqjlwj29yb3xwjihjh8kmn6jiq5cpf8rcirylzykfdv3wk"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="1.3.3"; sha256="18gnxs1cx4f7r3m2vgrkmm41vwkamk9mn5hcgjacv2adl0ihnagd"; depends=[ape corpcor mvtnorm numDeriv ouch]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="1.3.4"; sha256="08nwmw5z0m6d9xx5f1cna0i0qkanr8f2vj6yicsg1k2zh1xpx0mk"; depends=[ape corpcor mvtnorm numDeriv ouch]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="3.13.1"; sha256="1z8bj9zbc8h7w1xki9sc2p2rq6lv8gbcmiy9819z54d7lx1i9cnj"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.7.4.1"; sha256="1vs97yia78xh35sdfv5pj3ddqmy83qgamvyyh9gjg0vdznqhffzg"; depends=[]; }; @@ -8760,17 +8889,17 @@ in with self; { mvcwt = derive2 { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; }; mvdalab = derive2 { name="mvdalab"; version="1.4"; sha256="18wchy517qd45w5y0sr8lcafb7kmscy0q9vsryk9if6x2jq22lqz"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-1"; sha256="1gyc1xjyapadrv43kd4kngld37q8drhx4qfcimsvf7jdp33y6g5d"; depends=[MASS Matrix numDeriv]; }; - mvinfluence = derive2 { name="mvinfluence"; version="0.8-1"; sha256="1lpxvc6g8g9kkshxg41a2dwbxzkfnqp4dggr2j5hh2h6f0xrca4j"; depends=[car heplots]; }; + mvinfluence = derive2 { name="mvinfluence"; version="0.8-3"; sha256="0nygsldkm61ny5ljcc1r667rywj239j4x59ssi81cb2005kkjgm5"; depends=[car heplots]; }; mvmesh = derive2 { name="mvmesh"; version="1.5"; sha256="0my43559jh8ln1fx5rh5vw24vr6kxpd2h5scylfxfv2qfk794l0b"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; mvmeta = derive2 { name="mvmeta"; version="0.4.11"; sha256="1h1393s7xdi4sv461srsard6w961mcxxmxq9mkmfsgw5hdmkwkr2"; depends=[]; }; mvnTest = derive2 { name="mvnTest"; version="1.1-0"; sha256="0p37skzpljzz19x1hwh2hbxqins19zkbz7nlgfws5pgp9apazafq"; depends=[MASS mvtnorm]; }; mvna = derive2 { name="mvna"; version="2.0.1"; sha256="10i42hjm5bk62c20pmxhya283yzw1902ivkflmyqy79jri266dxf"; depends=[lattice]; }; mvnfast = derive2 { name="mvnfast"; version="0.2.5"; sha256="122zjzr0v4943cax10lp6flwfv479mncvalaj09kb173s5rgmf91"; depends=[BH Rcpp RcppArmadillo]; }; mvngGrAd = derive2 { name="mvngGrAd"; version="0.1.5"; sha256="0ir4pakfb2jq84rbfqix6rph8q6cgadjdn49rrdl4439b8hlsg8k"; depends=[]; }; - mvnmle = derive2 { name="mvnmle"; version="0.1-11"; sha256="02mpmrr22cqb3v8x7kydgg715yl3lrdgzgdqpchmp0xrl2db8gq4"; depends=[]; }; + mvnmle = derive2 { name="mvnmle"; version="0.1-11.1"; sha256="131k2bnn6194y3f35r9cgys8g1z2y52123ng8iijpkpbfd147y92"; depends=[]; }; mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; - mvord = derive2 { name="mvord"; version="0.2.1"; sha256="1s9b1lcgfbz333mq6bhqfi9753mhgf3hl5mrakzw2i0inmhjr9mx"; depends=[MASS Matrix mnormt numDeriv optimx pbivnorm]; }; + mvord = derive2 { name="mvord"; version="0.3.1"; sha256="1i1jhvs9h5s07zqa84i1lm3gx70v32agsiymc0v1msqai12plknb"; depends=[MASS Matrix mnormt numDeriv optimx pbivnorm]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.0.9"; sha256="1d562h3xicq962h27fi95qhrz9vkwxk0p8axhps1cy4b49w4bygi"; depends=[robCompositions robustbase sgeostat]; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; @@ -8778,12 +8907,12 @@ in with self; { mvst = derive2 { name="mvst"; version="1.0.1"; sha256="0sv8pd1524pr3xpxplq468dxfd0wipdr41awqwvcljpw5wgl34qa"; depends=[MCMCpack mnormt mvtnorm]; }; mvtboost = derive2 { name="mvtboost"; version="0.5.0"; sha256="06zgx1c2470bh3x6s2awzkxbyij6bvzv23xbvamg77v5pz5bjj6h"; depends=[gbm RColorBrewer]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.0"; sha256="0g0d4lrz854wkd0dz5aiad54i46aqkfhsq6cpbsfv0w5l2kwiqqz"; depends=[gtools]; }; - mvtnorm = derive2 { name="mvtnorm"; version="1.0-7"; sha256="0f7hzflygdnbwvzadr3knhybhanwg7agqddclj6mhbvwqpgb0qyh"; depends=[]; }; + mvtnorm = derive2 { name="mvtnorm"; version="1.0-8"; sha256="0la42lylb7cjrcrc285bn69bz9kyg556xw317iz139dp1yswl410"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; mwa = derive2 { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem MASS rJava]; }; mwaved = derive2 { name="mwaved"; version="1.1.5"; sha256="1hb7y42fy26pv6cf235g4xx1vyvwx7chwryi7phjd2aavxffj18z"; depends=[Rcpp shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; - myTAI = derive2 { name="myTAI"; version="0.7.0"; sha256="1x7zhkjm89xdzgn4z2ivl9w5srsfbavzdw8kgn2v7x75ihs0dr2n"; depends=[biomartr doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp readr reshape2 scales taxize tibble]; }; + myTAI = derive2 { name="myTAI"; version="0.8.0"; sha256="1wgjhbf3hvhy744zmrqd2wv5bhlysrx34fklhx4car11xylnsiyl"; depends=[biomartr doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp readr reshape2 scales taxize tibble]; }; mycobacrvR = derive2 { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; @@ -8794,52 +8923,52 @@ in with self; { nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; }; nFactors = derive2 { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[boot lattice MASS psych]; }; nLTT = derive2 { name="nLTT"; version="1.4"; sha256="0718r93xw8hw639xpa5w6lax7agr2k3avqx9dcdybqdp19x9qia0"; depends=[ape coda deSolve testit]; }; - nVennR = derive2 { name="nVennR"; version="0.2.0"; sha256="0y0y15r7j3in2rqiiz42b9rzljajp0pk8172kc7gj9nshih3ryqw"; depends=[grImport2 Rcpp RcppProgress rsvg]; }; - na_tools = derive2 { name="na.tools"; version="0.2.1"; sha256="1fdbrf97mvak44vzarwqr4w6cs6msr42zcfxl2ci3i67nlgsv4pl"; depends=[]; }; + nVennR = derive2 { name="nVennR"; version="0.2.1"; sha256="11qkwd8laf67iqyzx3ia424vykvsvy0k9d7labdgqfx2ihd95hh2"; depends=[Rcpp]; }; + na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; nabor = derive2 { name="nabor"; version="0.4.7"; sha256="16dxnvq6yxlrignzvxjdwzwm32fn2a8bsjqjsg5qz94ir7g3pzm6"; depends=[BH Rcpp RcppEigen]; }; - nadiv = derive2 { name="nadiv"; version="2.14.3.1"; sha256="08276bakyrn9d9vh08yzan60kigsihwfhgx788gwp6pk8v6m25wa"; depends=[Matrix]; }; + nadiv = derive2 { name="nadiv"; version="2.16.0.0"; sha256="0pfg9hbhcjgbfmakl1jqqaf9i07i5z5jk7sh2x7x7p4354z30z9y"; depends=[Matrix]; }; naivebayes = derive2 { name="naivebayes"; version="0.9.2"; sha256="0xmgcvvhfh7v8afi8fywaldawbx3s5hwgpvyyp2c9m6nrhw1kknl"; depends=[]; }; naivereg = derive2 { name="naivereg"; version="1.0.1"; sha256="0wvyv54q3r4jz03jdbsmnxsinzpqcac6xjvzcrjjdzbkqfxicxal"; depends=[gmm grpreg]; }; namedCapture = derive2 { name="namedCapture"; version="2017.06.01"; sha256="14zimn3wbavbkwra8vfmqdm1q5bmlmsbg0b29cjly5dd4zlfzzb0"; depends=[]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; - naniar = derive2 { name="naniar"; version="0.2.0"; sha256="04r3yfv6sv1yrwl4vasn5nxr0bn6fwdjk2zyx4p7vy8kfcw24300"; depends=[dplyr forcats ggplot2 glue magrittr purrr purrrlyr rlang tibble tidyr viridis visdat]; }; + nandb = derive2 { name="nandb"; version="1.0.1"; sha256="1hg6j8sv2fhaqwp2hzkgdwfymr2f3j6506vz2kshj3h3387nfhm4"; depends=[autothresholdr checkmate detrendr dplyr filesstrings ijtiff magrittr MASS purrr Rcpp rlang stringr]; }; + naniar = derive2 { name="naniar"; version="0.3.1"; sha256="0mscn99x3wwf5jdi6khlf6n9w737icf07vhz6yqsqpkzsd8z825w"; depends=[dplyr forcats ggplot2 glue magrittr purrr rlang tibble tidyr viridis visdat]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; - nanotime = derive2 { name="nanotime"; version="0.2.0"; sha256="138qz844sczgzzl8vn5079590hnq96w7jdbn851cpw64gmq21r4w"; depends=[bit64 RcppCCTZ zoo]; }; + nanotime = derive2 { name="nanotime"; version="0.2.1"; sha256="0zb6gwxzmcmk2v1020xc2l3bzrz8kz1b445x3ci6s7pgwh0njxra"; depends=[bit64 RcppCCTZ zoo]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; - nardl = derive2 { name="nardl"; version="0.1.4"; sha256="108m1bngal27pz80l1rdlgrx7x4id42ch95w1g9d0r5jnlxlvxp7"; depends=[Formula gtools matlab strucchange tseries]; }; + nardl = derive2 { name="nardl"; version="0.1.5"; sha256="1xi1fkwgkfc1b8qsgi4lrjx419778qk0vxzl23azcziwa6fha5p8"; depends=[Formula gtools strucchange tseries]; }; narray = derive2 { name="narray"; version="0.4.0"; sha256="0cr0y8mqwprxk0bv9160xvqxgvqkihn3avzsjm6ccivvb8zlkqxv"; depends=[reshape2 stringr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; nat = derive2 { name="nat"; version="1.8.11"; sha256="1s5hbi1b20jq0qv4px0zrwsivhi2mdlqbwx4lv55mdhj447rxk1x"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; nat_nblast = derive2 { name="nat.nblast"; version="1.6.2"; sha256="0b2gzyzszj2v5girxyv31nvds0837lzvim7x7bs9h897yrxs57k8"; depends=[dendroextras nabor nat plyr rgl spam]; }; - nat_templatebrains = derive2 { name="nat.templatebrains"; version="0.8.2"; sha256="09kyi4p28n8dgw8jpv00vh9vl6nqmmgqfriwkicx8yyq65vh6fxk"; depends=[digest igraph memoise nat rappdirs rgl]; }; + nat_templatebrains = derive2 { name="nat.templatebrains"; version="0.9"; sha256="0r0ydhxnax4x4gwp60bgarhgp59g4sis7msa3rq4kddv8qdi3gix"; depends=[digest igraph memoise nat rappdirs rgl]; }; nat_utils = derive2 { name="nat.utils"; version="0.5.1"; sha256="12g87ar795xfbz7wljksb24x9hqvcirjr50y4mbpx1427r0l7clv"; depends=[]; }; natserv = derive2 { name="natserv"; version="0.1.4"; sha256="0qwf7lapx5gchk8xmdnmxr10j5dnkp52mqnh1ja216z7l841cl07"; depends=[crul data_table tibble xml2]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; - nauf = derive2 { name="nauf"; version="1.1.0"; sha256="1c7g7qjd77lcx2nghw1mxp60q7sc2hjdr4drjkypzyqs8q3q97rm"; depends=[bayesplot car digest lme4 lmerTest loo lsmeans MASS Matrix pbkrtest Rcpp rstan rstanarm shinystan standardize stringr]; }; nbc4va = derive2 { name="nbc4va"; version="1.0"; sha256="0y1qpkzjr327qyvmqf129m400rvn6gwk72ccnly6cqq53icrarn4"; depends=[]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.0.2"; sha256="1dc9jxfibvb27qwiykj93322nb1ahwrg69zqcc0p9xp0rpsim02w"; depends=[]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; - ncappc = derive2 { name="ncappc"; version="0.2.1.1"; sha256="19wq7ihcr8989xpzf1dsxz1kwwzqvsx2mwcciqv9204k4fc94zjc"; depends=[dplyr ggplot2 gridExtra gtable knitr lazyeval readr reshape2 scales testthat xtable]; }; - ncar = derive2 { name="ncar"; version="0.3.8"; sha256="02xglxz63b9b7yfkwqrh81spzkmvglay6wpylm9fwcqxdasf3bj5"; depends=[NonCompart rtf]; }; + ncar = derive2 { name="ncar"; version="0.4.0"; sha256="0in8nvkxgd6p5xdwyqnqlnhskysbja9lw1pw3hl8zfn1qhcgqxl9"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; ncdf_tools = derive2 { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[abind chron JBTools plotrix raster RColorBrewer RNetCDF]; }; ncdf4 = derive2 { name="ncdf4"; version="1.16"; sha256="0lwjjis0b83c4l3xvqai4ckzrskd6mychck1iwxcxgjvh0d77mgd"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[abind ncdf4 PCICt]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; - ncf = derive2 { name="ncf"; version="1.2-3"; sha256="0d4qbfdhwy071vhkfjn9385vak73zf9c9ghbbiba1ha2d9d2irsl"; depends=[]; }; + ncf = derive2 { name="ncf"; version="1.2-5"; sha256="0w7zaiiy1ddahq8nw3q23k6qh4yw2d1iw4wybwiii3spn8hab57s"; depends=[]; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; }; ncmeta = derive2 { name="ncmeta"; version="0.0.2"; sha256="1qr0zfyy8g3zrmvg6i6b7sfvl3lavr391rqgf6pqhslg7i9cgpiz"; depends=[dplyr rlang RNetCDF tibble]; }; + ncodeR = derive2 { name="ncodeR"; version="0.1.0"; sha256="0bjjz9x6cfgkgc6z32pkl5b6khhdl5yjn9mi2b3n184kvpszjygj"; depends=[cli R6 rhoR]; }; ncpen = derive2 { name="ncpen"; version="0.2.0"; sha256="1wrpscd9n7z9lz7537qyy4rn4pjznlb8zwb79kkzmnfvyj21fi1r"; depends=[Rcpp RcppArmadillo]; }; ncvreg = derive2 { name="ncvreg"; version="3.10-0"; sha256="0q9rk1mz2rm1h99m093kz7a2p6fl3pj4nqzblp3154q8i1kva7za"; depends=[]; }; ndjson = derive2 { name="ndjson"; version="0.6.0"; sha256="0w7a587q45hkzmjhzlyrhk0hw4c8avkfzf4ai0wib5qk3al8gk6n"; depends=[data_table dplyr dtplyr Rcpp]; }; ndl = derive2 { name="ndl"; version="0.2.17"; sha256="08h01rw7gsa31zp91q2rsw1ba9yf0fyhz3w8s9xq5788qwc80280"; depends=[Hmisc MASS Rcpp]; }; - ndtv = derive2 { name="ndtv"; version="0.10.0"; sha256="1j4g5qclfbw7fkykaclrsb2d70vy40fd1rgr1n73qyrkx0fyym44"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; + ndtv = derive2 { name="ndtv"; version="0.12.2"; sha256="0jyzdi19n2h6kf8kbibg1lap3mxq9bbn390xwrv2abnc3y437vqb"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; nearfar = derive2 { name="nearfar"; version="1.1"; sha256="0i2nc1b4vslgjj29x5q24yxv9l3i0g5hcrbm9xy1b3039n70cwix"; depends=[car GenSA MASS nbpMatching]; }; neariso = derive2 { name="neariso"; version="1.0"; sha256="1npfd5g5xqjpsm5hvhwy7y84sj5lqw9yzbnxk6aqi80gfxhfml4c"; depends=[]; }; neat = derive2 { name="neat"; version="1.1.3"; sha256="0d8igx576jhi7f666nwn0wpdyvin974k5cfm7wdszzbnpng5961k"; depends=[igraph]; }; - neatmaps = derive2 { name="neatmaps"; version="1.0.7"; sha256="07nr8c5i1s3sba4l2123vb50b1cgn1qjdckwmyjwwai1yb3smkag"; depends=[dendextend ggplot2 heatmaply igraph pvclust]; }; + neatmaps = derive2 { name="neatmaps"; version="1.1.0"; sha256="0qsc0jwnyadbm45qrskpmw12i980q11i988mga8ky3x4fa4jp82d"; depends=[dendextend ggplot2 heatmaply igraph pvclust]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-8"; sha256="0qyhypryp3p8c876jffg1syg05b370mw24clwlx733yx86qhmb1v"; depends=[]; }; @@ -8849,18 +8978,21 @@ in with self; { nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; }; nesRdata = derive2 { name="nesRdata"; version="0.1.0"; sha256="1h33hql0vgkr2ps1ysisdxxb0cnm18mh8sbd3fxy9xf42icwfwdb"; depends=[dataone dplyr purrr rappdirs readr]; }; nestedRanksTest = derive2 { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; }; + nestfs = derive2 { name="nestfs"; version="0.8.4"; sha256="1w2wb3wphpx8y17jwpnbqq9igyq854rsa35bhk51m422zhygqygk"; depends=[dgof foreach]; }; net_security = derive2 { name="net.security"; version="0.3.0"; sha256="15vvcmakl9hl1srdhjf73g2bwwcxn93220i4gv0rcsw5732mjanz"; depends=[data_table dplyr jsonlite plyr R_utils stringr XML]; }; netCoin = derive2 { name="netCoin"; version="0.2.8"; sha256="0axac72fj5qhssdpx8k20lgayzpwzcd3pp7cz4mv6cwfzc0y8768"; depends=[haven igraph Matrix]; }; + netSEM = derive2 { name="netSEM"; version="0.5.0"; sha256="0gcs38r3xwwcxhgs1xfbkccz9k0y7dk5kky48fvmys8v1p4rsjpp"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; }; netcoh = derive2 { name="netcoh"; version="0.2"; sha256="0q60hvyparlwdww6as6hcdzfs6q3n8z1rfpj53r5q2s77x6q07xx"; depends=[Matrix Rcpp RcppArmadillo]; }; netcom = derive2 { name="netcom"; version="1.0.4"; sha256="0fka14sffm0p1gldk27fd62ng05spfpbn665b4w5hdf1z4z0bs20"; depends=[clue expm igraph Matrix pdist pracma vegan]; }; - netdiffuseR = derive2 { name="netdiffuseR"; version="1.19.0"; sha256="0rnf7hf5vxpqw2rn00yqmkgpsx752pmfigyggbs4ikfbcsjq24sx"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM]; }; + netdiffuseR = derive2 { name="netdiffuseR"; version="1.20.0"; sha256="0z7k62dipksc8gfppicbknh5sig7jdlr80h15q89bbk26jg5lqsr"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridis]; }; netgen = derive2 { name="netgen"; version="1.3"; sha256="1iywpl9n1yplnd38dff8m9mz1vlfbvplw393grhpav5czcknj160"; depends=[BBmisc checkmate ggplot2 igraph lhs lpSolve mvtnorm stringr]; }; netgsa = derive2 { name="netgsa"; version="3.0"; sha256="0cqyiilpxhdi6zmibn85y1aqwpcs1aialz34klakmllzn6kvdsng"; depends=[corpcor glasso glmnet igraph Matrix]; }; - netgwas = derive2 { name="netgwas"; version="0.1.4.2"; sha256="19r168xppxgdj3b0b575b47vgmzbzkgwpqh499vlm5as9livjlyb"; depends=[glasso huge igraph MASS Matrix RBGL tmvtnorm]; }; + netgwas = derive2 { name="netgwas"; version="1.5.0"; sha256="0ixdk602v58ii4awrvj63j0zn90z3csc0lcwajfa8j8ymryc0hgs"; depends=[glasso huge igraph MASS Matrix RBGL tmvtnorm]; }; + netjack = derive2 { name="netjack"; version="1.0.0"; sha256="016byr8qsmmiyk5wdafn809w2sc71mav7jdxyg4cs48gzp7zslpp"; depends=[brainGraph ggplot2 igraph Rdpack]; }; netmeta = derive2 { name="netmeta"; version="0.9-8"; sha256="0bkfxdz14lg9r51ykwmkmpm6vhbvly35hrcgj6f26g36ihagjksd"; depends=[magic MASS meta]; }; netrankr = derive2 { name="netrankr"; version="0.2.0"; sha256="1y56y5wv95d7mmjf8rrwr7cs0k64h9a2qbpind4xp0kakpjihn7m"; depends=[igraph Rcpp RcppArmadillo]; }; - netregR = derive2 { name="netregR"; version="0.3.0"; sha256="106qq3mafqbcdyhnjicbzc4rzi9mr262nqb3ncpzpcvkf0xd988w"; depends=[Matrix]; }; + netregR = derive2 { name="netregR"; version="0.3.1"; sha256="0ki0ywnwjba53bram4dxxdxx631b0rywp1rjgj83nvdbg3mdcp7x"; depends=[Matrix]; }; nets = derive2 { name="nets"; version="0.9"; sha256="1wcr0fj50w3rqxw0k9cb81c2psdkb0dwwwzrjvxv50hksbhyi8kn"; depends=[igraph]; }; network = derive2 { name="network"; version="1.13.0.1"; sha256="1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0"; depends=[]; }; networkD3 = derive2 { name="networkD3"; version="0.4"; sha256="02wxki67drppgfka1is1ykg1f2rxf0x0657c0crj7ipfy62jbf1k"; depends=[htmlwidgets igraph magrittr]; }; @@ -8871,16 +9003,16 @@ in with self; { networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; }; networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; }; networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; }; - networktools = derive2 { name="networktools"; version="1.1.1"; sha256="1cfjhh0w5gs1v6d9q40bcjs658p308i20nybnqb8r7nkf77acxbg"; depends=[cocor devtools ggplot2 gridExtra igraph IsingFit NetworkComparisonTest nnet qgraph reshape2]; }; + networktools = derive2 { name="networktools"; version="1.2.0"; sha256="023vmzvvlilr8dd1jjwp4xiszqkvpa231mkd6d9ibm3r99zcgdza"; depends=[cocor devtools eigenmodel ggplot2 gridExtra igraph IsingFit NetworkComparisonTest nnet psych qgraph R_utils RColorBrewer reshape2 smacof]; }; neuRosim = derive2 { name="neuRosim"; version="0.2-12"; sha256="1hsnw9xipdr74fydq9013252ycbi9igh28s0j4dbdx52pv3iixzl"; depends=[deSolve]; }; neural = derive2 { name="neural"; version="1.4.2.2"; sha256="05hrqgppgwp38rdzw86naglxj0bz3wqv04akq7f0jxbbjc6kwy4j"; depends=[]; }; neuralnet = derive2 { name="neuralnet"; version="1.33"; sha256="14ga04mcd793v9a2584jb9l7n20kw00fgy3gayfwrkr1j39szdls"; depends=[MASS]; }; neurobase = derive2 { name="neurobase"; version="1.26.1"; sha256="0fb2cvh3j650zjx7b60jfrvm5i7n3l98wis91bmyr9hx3qz24rj5"; depends=[abind matrixStats oro_nifti R_utils RNifti]; }; neuroblastoma = derive2 { name="neuroblastoma"; version="1.0"; sha256="0hs87fvwaq53xxbh2dw3hjsmf1zkyqli9qyacxf72fnkyhhl8b45"; depends=[]; }; - neurohcp = derive2 { name="neurohcp"; version="0.8.0"; sha256="1p38n2ggz2yj6fqrlf2jm1jnjbv8a0ifi477f5qklmr4bga2c4kr"; depends=[base64enc digest httr xml2]; }; + neurohcp = derive2 { name="neurohcp"; version="0.8.1"; sha256="01q9dkrpmwfj4r7is97f3lsmn84vm5qpvf44zfm1a6hhpxa0n7z0"; depends=[base64enc digest httr xml2]; }; neuroim = derive2 { name="neuroim"; version="0.0.6"; sha256="00cjr6pkip6zi2d0q3qbn3lb3k0z82v6c19qslvgpa9n0g63dr5p"; depends=[abind assertthat hash iterators Matrix Rcpp readr rgl stringr yaImpute]; }; neuropsychology = derive2 { name="neuropsychology"; version="0.5.0"; sha256="0hlbjf8hxz4cl7fvg9mbyfmcyyxncc2nh9h1mrd2yzgrpgn0d0b5"; depends=[BayesFactor caret dplyr ggcorrplot ggplot2 Hmisc htmlTable lme4 MuMIn png ppcor psych stringi tidyr tidyverse tm wordcloud2]; }; - neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.1"; sha256="15bgb9bh4nwjhjq6wkfbk7cys4mrih3bnjv527mrack8pwkybgpa"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; }; + neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.2"; sha256="1p1zjc3fiphkxflsyzrxx8af98aa0gp9pvby63mmrsjb0z7ps948"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; }; neverhpfilter = derive2 { name="neverhpfilter"; version="0.2-0"; sha256="0m4gbqnjw2nmhf25svznlf6pd0b0mslk52lpirmlj1iv04w1aq1i"; depends=[xts zoo]; }; newTestSurvRec = derive2 { name="newTestSurvRec"; version="1.0.2"; sha256="06p782md33wqh5wa1735yg5i01d42p74kl7h5qhqs9cd732ls6pz"; depends=[]; }; ngram = derive2 { name="ngram"; version="3.0.4"; sha256="1q4y64dy7vcjikbfx20fpdiy1kwvxay4y90xr5j8d8zkqnva0way"; depends=[]; }; @@ -8892,19 +9024,20 @@ in with self; { nhstplot = derive2 { name="nhstplot"; version="1.0.1"; sha256="1f07gfmbx80as54mlzdbs2z1vzc78rjy6i6m7zd4jplgcqdcynws"; depends=[ggplot2]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; - nima = derive2 { name="nima"; version="0.4.5"; sha256="1fllq76k4r07ymd58s865hgg3yrmwa34kr5mjd89n50mm1m110mh"; depends=[assertthat devtools ggplot2 ggthemes gridExtra gtools plyr ProjectTemplate scales survival]; }; - nimble = derive2 { name="nimble"; version="0.6-10"; sha256="0aa6823b7xnp2bgrc3jwjrc2py9y57xadsahzva4zxn7vlsp5f36"; depends=[coda igraph R6]; }; + nilde = derive2 { name="nilde"; version="1.1-1"; sha256="09r8xfwpz243xmb5l33fw7wf09lw5q9m57anqd2n5wrxfqzzz57h"; depends=[]; }; + nima = derive2 { name="nima"; version="0.5.0"; sha256="1xpzq1mg2l9hnh83hbmxcqz3v0ai62ii7k688i8lpj0xnpsm25pl"; depends=[assertthat devtools ggplot2 ggthemes gridExtra gtools plyr ProjectTemplate scales survival]; }; + nimble = derive2 { name="nimble"; version="0.6-11"; sha256="12vprr5snz05y3k4lq7x51yz1q4crwx5cn42dvbnff4pf7kpj218"; depends=[coda igraph R6]; }; nipals = derive2 { name="nipals"; version="0.4"; sha256="0h9jxmj44x3lllxk1y2izkslafbiab175qrsxlnfcvhnaj13zsds"; depends=[]; }; - nitrcbot = derive2 { name="nitrcbot"; version="1.0"; sha256="1cg52zv72ppv8vgfl3rccgykw2bhlk3j7pm47cydfmhqbc6sn6by"; depends=[dplyr httr]; }; + nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; - nlcv = derive2 { name="nlcv"; version="0.3.2"; sha256="1lknlqd64p15lnkydbi7zx7lmhg1fdl750yjqjaccdjzrgrqvgkv"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; - nleqslv = derive2 { name="nleqslv"; version="3.3.1"; sha256="1n1sbp7436yd5g6v0060j2iwk4rppjq2pc5x47g9wlwnskdfgvl7"; depends=[]; }; + nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; + nleqslv = derive2 { name="nleqslv"; version="3.3.2"; sha256="1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"; depends=[]; }; nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; }; nlme = derive2 { name="nlme"; version="3.1-137"; sha256="11vyxxc0n36vb8d8g02zr0402ymicvbifwdsqm7gy9iqqnwrn101"; depends=[lattice]; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; - nlmixr = derive2 { name="nlmixr"; version="0.9.0-3"; sha256="1fwnq0bnsqadadgy9i1083dz4zkidwdxm2ncy6jyrk1pb055m318"; depends=[BH brew dparser ggplot2 inline lattice lbfgs Matrix memoise minqa mvtnorm n1qn1 nlme numDeriv PreciseSums R_utils Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders]; }; + nlmixr = derive2 { name="nlmixr"; version="0.9.1-3"; sha256="0pl9dm09wc4wa0y64ncqcrrarmimahgcdzf1hz09aj5r5l5pvfvd"; depends=[BH brew cli crayon dparser fastGHQuad ggplot2 lattice lbfgs magrittr Matrix memoise minqa n1qn1 nlme numDeriv PreciseSums R_utils Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders vpc]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.2"; sha256="00lcyz5csjj9qbhh7yw0qlbnyv32k0c2dpm23v04n9wkdgs67jy0"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; nloptr = derive2 { name="nloptr"; version="1.0.4"; sha256="1cypz91z28vhvwq2rzqjrbdc6a2lvfr2g16vid2sax618q6ai089"; depends=[]; }; @@ -8926,27 +9059,29 @@ in with self; { nlts = derive2 { name="nlts"; version="0.2-2"; sha256="0bx6xqa3j0k01p43vnv5lcv2pryjzgsak77y1cr9rm2xwqa3j6az"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="0.1.1"; sha256="0976jafmdhy2rz5fcarb7hh1vaanm8l2610hk06f5k93xjhypg8j"; depends=[]; }; nmathresh = derive2 { name="nmathresh"; version="0.1.3"; sha256="09pxbizmvdp2l5j1gs0v3xk2lsyclx5rndaw6b4ccn61m3x060ls"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; - nmfem = derive2 { name="nmfem"; version="1.0.1"; sha256="10y3s7g76pnqqyg8wc3cyjiqay7scp0bdlly4yx30v2sbvxf0msx"; depends=[d3heatmap dplyr mixtools plyr tidyr]; }; + nmfem = derive2 { name="nmfem"; version="1.0.3"; sha256="1v808k25g0ph1wvx1j89izfxy9szn0m4sf965d8nkygrk184i9gj"; depends=[d3heatmap dplyr mixtools plyr tidyr]; }; nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; }; - nmslibR = derive2 { name="nmslibR"; version="1.0.1"; sha256="02c2ns9dw1mkr5gmsd31j0yjcr3vr302yvqkfdkmm9csppdcrmb3"; depends=[Matrix R6 Rcpp RcppArmadillo reticulate]; }; + nmixgof = derive2 { name="nmixgof"; version="0.1.0"; sha256="0cbwrsxrcf8pn4ycn6r0z8jdidw5l6kdvwyrks69fq4pjzx988d6"; depends=[Rcpp unmarked]; }; + nmslibR = derive2 { name="nmslibR"; version="1.0.2"; sha256="1ya3dqnkrlvpil2nypcl3pp6f3x20ip40avnrbqgbylak7yqg9yw"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; }; nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; }; + nnTensor = derive2 { name="nnTensor"; version="0.99.1"; sha256="0ai3mqyw24mwl6gcz2jmlvfv59y937n675gram1ajwxdlx76fxff"; depends=[fields plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; nneo = derive2 { name="nneo"; version="0.1.0"; sha256="0jaaz15y1csh3bwmzp7mgx86m3f0w3ykzb8qdvg8ak2grxw3wl6a"; depends=[crul data_table fauxpas jsonlite tibble]; }; nnet = derive2 { name="nnet"; version="7.3-12"; sha256="17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7"; depends=[]; }; nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; }; nnfor = derive2 { name="nnfor"; version="0.9.2"; sha256="1wxv8s5547spw155rj7nlilsfn5d7m40xpfy87mady93n25pwm3d"; depends=[forecast glmnet MASS neuralnet plotrix]; }; - nngeo = derive2 { name="nngeo"; version="0.1.5"; sha256="1285a0p461wm91zriy7rh3awh0k0z7ifmjkxffyxh1l84y51jfak"; depends=[geosphere lwgeom RANN Rcpp sf units]; }; + nngeo = derive2 { name="nngeo"; version="0.1.8"; sha256="0fxiq65kd1q7w95m9hhg18xw3l8czi0li60wkr9h3dakmy2s9j7m"; depends=[geosphere lwgeom RANN Rcpp sf sp units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; noaastormevents = derive2 { name="noaastormevents"; version="0.1.0"; sha256="1pkfmvp20f6xi2iy7l6c67zspp9f4wkrh7s308hlklms2difhp6m"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 htmltab hurricaneexposure lubridate maps plyr RColorBrewer stringr tidyr viridis XML]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; - nodiv = derive2 { name="nodiv"; version="1.1.9"; sha256="0pbcigfqps44i07yghcg5zx5nlybivkb34bz67fnkgkpbkbs79k7"; depends=[ape picante raster sp vegan]; }; + nodiv = derive2 { name="nodiv"; version="1.2.0"; sha256="0bdhlq5nd169hbwnik4z843xzh5bbmahrvyxj54626zxyvf1fmfb"; depends=[ape picante raster sp vegan]; }; nofrills = derive2 { name="nofrills"; version="0.3.0"; sha256="18hryq6clywlr2f45az6ryslkkarly45nacln4bwk6ip0yfl5s98"; depends=[rlang]; }; noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; }; nomclust = derive2 { name="nomclust"; version="1.1.1106"; sha256="17hb89k72sw3ya0wm3n95mpx4vj7mpl4mzs8qwl2773dh2mcjgjq"; depends=[cluster dummies]; }; nomine = derive2 { name="nomine"; version="1.0.0"; sha256="1yaxhac002fxcyiz5x562fnhrsq9h9nx0qmw4rykjsc5l2qbi9gd"; depends=[httr RCurl]; }; - nomisr = derive2 { name="nomisr"; version="0.2.0"; sha256="0a83fcn5qq2wycbn6acfhapni3k84jf1xj7aarmnr9az1gqdbwc9"; depends=[dplyr httr jsonlite readr tibble]; }; + nomisr = derive2 { name="nomisr"; version="0.3.0"; sha256="0ia1i3gzp7wp8hf57arajbf7063m4jpbb2hl0l03rwg1z4afb7jd"; depends=[dplyr httr jsonlite readr rlang rsdmx tibble]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; noncensus = derive2 { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; @@ -8971,6 +9106,7 @@ in with self; { normalr = derive2 { name="normalr"; version="1.0.0"; sha256="1ahrg188vbhnrnwag0zi6lcb3g0y1mbz06sl3j1wyllq5l918cc7"; depends=[magrittr MASS purrr rlang shiny]; }; normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; }; normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; + norris = derive2 { name="norris"; version="0.1.0"; sha256="1y90m9k18y0cm5rgkq1ny0d1sc14z87srlwqv99ppn1fg4r21k37"; depends=[dplyr httr jsonlite stringr]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; nos = derive2 { name="nos"; version="1.1.0"; sha256="0hbncama8cx8q0rc56bil38fbj33z49v4d6zdkvxs6wgmmglnrfs"; depends=[dplyr gmp]; }; @@ -8978,14 +9114,14 @@ in with self; { not = derive2 { name="not"; version="1.0"; sha256="1hwrka8a5jygm3zjh5jhzjx2bvdqip7pb5009vkk7k0sp8m760kq"; depends=[]; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; - novelist = derive2 { name="novelist"; version="1.0"; sha256="0wzx0vkqvl9sfhbbrzylsxhm3qmjj5w8sy5w6gvd104fn84d49yk"; depends=[]; }; - nowcasting = derive2 { name="nowcasting"; version="0.1.2"; sha256="08f45k0z5k9fmf1k9sjg71jrnlvalkylimby8plqqxiza05ga25b"; depends=[corpcor DBI httr lubridate magic matlab Matrix RCurl RMySQL xts zoo]; }; + nowcasting = derive2 { name="nowcasting"; version="0.1.3"; sha256="1b74rqz7y4g5zyrbmns27v60jpv13s5aax9dyiyvnk2y7ng1kp5x"; depends=[corpcor DBI httr lubridate magic matlab Matrix RCurl RMySQL xts zoo]; }; noweb = derive2 { name="noweb"; version="1.0-4"; sha256="17s65m1m8bj286l9m2h54a8j799xaqadwfrml11732f8vyrzb191"; depends=[]; }; - np = derive2 { name="np"; version="0.60-6"; sha256="1y72x5j9j9mcgcy2xizk31gl843hfkngxdn8s4qw7yhw2qj79hsr"; depends=[boot cubature quantreg]; }; + np = derive2 { name="np"; version="0.60-8"; sha256="17h67a510wh83800ri6g02wvznrlhigxni8shyijz1iaxcpk8k4j"; depends=[boot cubature quadprog quantreg]; }; npIntFactRep = derive2 { name="npIntFactRep"; version="1.5"; sha256="14ms66ppzb4jjsa3fparic6gdn913f6wv2ccjyb02j1ahs4iaa4g"; depends=[ez plyr]; }; npROCRegression = derive2 { name="npROCRegression"; version="1.0-5"; sha256="09ngfj0bd9cp19lpwsbknp2y71x36k03ph84bmf67wm1q2na7f93"; depends=[lattice]; }; nparACT = derive2 { name="nparACT"; version="0.8"; sha256="0zwhz52j526n3xd21s7kghjaby56a8g296bkkc6scaa23zn1xg4b"; depends=[ggplot2 stringr zoo]; }; nparLD = derive2 { name="nparLD"; version="2.1"; sha256="1asq00lv1rz3rkz1gqpi7f83p5vhzfib3m7ka1ywpf2wfbfng27n"; depends=[MASS]; }; + nparMD = derive2 { name="nparMD"; version="0.1.0"; sha256="0kxbcykc01b1c68hk3akfhs9xzmshxvjvhm69k4j1c4nvpz8y9z9"; depends=[Formula gtools MASS matrixcalc matrixStats]; }; nparcomp = derive2 { name="nparcomp"; version="2.6"; sha256="111ypwyc885lvn64a5sb2k552j6wr3iihmhgx5y475axdiva5pzf"; depends=[multcomp mvtnorm]; }; nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; npbr = derive2 { name="npbr"; version="1.6"; sha256="1jvq4snwrwjhhjgm8n8yxd5y94ks5zzi0xwdn931yp300qnikyzc"; depends=[Benchmarking np quadprog Rglpk]; }; @@ -8994,21 +9130,22 @@ in with self; { nplplot = derive2 { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; }; nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; }; npmlda = derive2 { name="npmlda"; version="1.0.0"; sha256="1dr25an7cac89jyb8zhmj3ry6lq7sh7zxci1injplnk4gzy17mc5"; depends=[]; }; - npmlreg = derive2 { name="npmlreg"; version="0.46-1"; sha256="1gddl6diw8ix8vz7n1r4ps9cjx3q00mafpapskjk7pcz69m6hfv1"; depends=[statmod]; }; + npmlreg = derive2 { name="npmlreg"; version="0.46-3"; sha256="1k1l977g1a86918k6w7h2m8145x7adb8r7q2s4jky8s9ixa14hz3"; depends=[statmod]; }; npmr = derive2 { name="npmr"; version="1.1"; sha256="1ss8ypvv6qcdxv7l3szivliwmhidmzi3572p3nz96ysndf56akl4"; depends=[]; }; npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; nppbib = derive2 { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; }; npregfast = derive2 { name="npregfast"; version="1.5.1"; sha256="0s9ci3nybzwykrgi9z2rqp6l15mqbxf759ks0clvkbm7wxv3whk5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; - nprobust = derive2 { name="nprobust"; version="0.1.2"; sha256="0hc2p30jalaibjwlq8g52rdpifhvmpaq2c7ww0zzhf3h1az442xs"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + nprobust = derive2 { name="nprobust"; version="0.1.3"; sha256="1zr89myhamcxzk7j04rxcc4mbi86pf09kl70p8niklm0b3wmsjzj"; depends=[ggplot2 Rcpp RcppArmadillo]; }; nproc = derive2 { name="nproc"; version="2.1.1"; sha256="0wpny7c1n9mmv1yywlws8gjbidkrikvcqcckrxpba9avjw2c5df8"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; }; npsf = derive2 { name="npsf"; version="0.3.1"; sha256="1mv2dzn3gc7b9ynpw8dv22xd31igg4hmkgrds12n9920pghkya44"; depends=[Formula Rcpp]; }; npsm = derive2 { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; }; npsp = derive2 { name="npsp"; version="0.5-3"; sha256="0ck6iymfc73bzrifdc2sagcliz1yakqk1yv67a3ykha996jsrx99"; depends=[quadprog]; }; + npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; }; npsurv = derive2 { name="npsurv"; version="0.4-0"; sha256="1wq4c9yfha5azjhrn40iiqkshmvh611sa90jp3lh82n4bl9zfk20"; depends=[lsei]; }; - nricens = derive2 { name="nricens"; version="1.5"; sha256="0a7b4kw91qkr9vrm8swflby06a78d059im54zxxgvy42qjsijwqx"; depends=[survival]; }; - nsRFA = derive2 { name="nsRFA"; version="0.7-13"; sha256="0xa8zm0mk5ckwsmbgdyk8xv1q56pm6j19zxd48rwl3fsqs49bpah"; depends=[]; }; + nricens = derive2 { name="nricens"; version="1.6"; sha256="0fpgp6k3mhb0qxbx6248k9bscnmlzwj70mqh631a1nc4cpdjvw3q"; depends=[survival]; }; + nsRFA = derive2 { name="nsRFA"; version="0.7-14"; sha256="0sd3br2a5jf6mqbxk8s2i7px9vi9bk3pl8bd5884k40xqcj77irs"; depends=[]; }; nsROC = derive2 { name="nsROC"; version="1.0"; sha256="0c99z8kknbrnbyyv7p79sj848aq7b5n4m4r7v1yrcs61ackrdn2n"; depends=[sde survival]; }; nscancor = derive2 { name="nscancor"; version="0.6.1-25"; sha256="183kvzlln5lhmi51dm0skq1165c3hhy1yz5h2g7nxwqk2b4p23xj"; depends=[]; }; nscprepr = derive2 { name="nscprepr"; version="0.1.1"; sha256="1rd32zywrzyxz6hpn9s6cwjlg8q8rz3cc0p3b5gan8bicx0ilwjc"; depends=[dplyr lubridate stringr]; }; @@ -9016,25 +9153,25 @@ in with self; { nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; }; nspmix = derive2 { name="nspmix"; version="1.4-0"; sha256="1cd133ncnr4g0n6w4c44q6mda8y1n7cfmsgy1x1kczvwp7cm9kk2"; depends=[lsei]; }; - nsprcomp = derive2 { name="nsprcomp"; version="0.5"; sha256="1rrjiwkpiaqlp27s5xfd6jwmmpzgxm5d7874gp33511wa0vrhnnf"; depends=[]; }; + nsprcomp = derive2 { name="nsprcomp"; version="0.5.1-2"; sha256="1zlc1ximx96f235c0l8qfs6vbp1kpnbf943wxsfahnnlnxvwi59f"; depends=[]; }; nucim = derive2 { name="nucim"; version="1.0.0"; sha256="0fyapw6f5wkybr4mwmqpk9wy349j5sa4q26pci1bsy4ly2wf9wx6"; depends=[bioimagetools EBImage fields stringr]; }; nullabor = derive2 { name="nullabor"; version="0.3.1"; sha256="0anwla6x9y2i7yd6r0yi1xhy0zfqwfpp5h1f18gji11nmiva9d81"; depends=[dplyr fpc ggplot2 MASS moments plyr]; }; numDeriv = derive2 { name="numDeriv"; version="2016.8-1"; sha256="07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v"; depends=[]; }; numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; }; numKM = derive2 { name="numKM"; version="0.1.0"; sha256="0pnwb7skp5jx5ibgfkympq59m9sf71gvk5zc0fwik539vrzfykdf"; depends=[survival]; }; - numOSL = derive2 { name="numOSL"; version="2.3"; sha256="1bcj1qk3nx1jqhldx9rcwphvlxspz3bj4vb891hkw2fa2i4559c5"; depends=[]; }; - numbers = derive2 { name="numbers"; version="0.6-6"; sha256="05qmv12b90vkzf2b50qjnp8hja6rms91jj97knx70n2yhpb2lnd9"; depends=[]; }; + numOSL = derive2 { name="numOSL"; version="2.5"; sha256="0wrddd5yvilp66p2m9jbchd0spb55zgl3k63zf3yq3dc8jdrvzvy"; depends=[]; }; + numbers = derive2 { name="numbers"; version="0.7-1"; sha256="1k5a24pnjhn3h330q0s7ivk2v5dsjmg2xwlhfinzixihnwhc12xy"; depends=[]; }; numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; }; numform = derive2 { name="numform"; version="0.4.0"; sha256="09vim4ajnnkdf27ag5j8pj7p8qyfakfh3ar1dki8bqzms2d7bkcm"; depends=[]; }; nutshell = derive2 { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_audioscrobbler nutshell_bbdb]; }; nutshell_audioscrobbler = derive2 { name="nutshell.audioscrobbler"; version="1.0"; sha256="10fvc5d22gnfb0bkgbww48f0vvcaja96g5gfv85kap939j11172j"; depends=[]; }; nutshell_bbdb = derive2 { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; }; nws = derive2 { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; }; - nycflights13 = derive2 { name="nycflights13"; version="0.2.2"; sha256="1857pwyhb5gvbdxv934nlc50n4ai7njm89js7b7ywfg7mhgha4yc"; depends=[tibble]; }; + nycflights13 = derive2 { name="nycflights13"; version="1.0.0"; sha256="10b05cxpiysvlif59lriprxcyhgk59d3qmcpwwzk88wy6bicl9hn"; depends=[tibble]; }; nyctaxi = derive2 { name="nyctaxi"; version="0.0.1"; sha256="187fs819g45f8irx2s9bgwnzr00lyamfv2ra88kyb8q2cq1icwwy"; depends=[DBI dplyr etl rlang stringr]; }; nzelect = derive2 { name="nzelect"; version="0.4.0"; sha256="19kcbq454yg9g76ix7v3nibgw2203d7vv6f2d6d2zkcc0h08bjm7"; depends=[]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; - oXim = derive2 { name="oXim"; version="1.2.1"; sha256="1qjscjq5v50v7kwbmiz1niylwpnh20g5qldyxn7fw0kkqs398sk0"; depends=[gstat imagine R_matlab sp]; }; + oXim = derive2 { name="oXim"; version="1.2.2"; sha256="1hi4ps36amvgqgj64yc3cvy4sx32z1az6lk5yy1sciy6074k5byb"; depends=[gstat imagine R_matlab sp]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; oai = derive2 { name="oai"; version="0.2.2"; sha256="0q1w29wrppi5sfabdw8px7zr92bgri3jhy0y7dhi46xggxfg9vm1"; depends=[httr plyr stringr tibble xml2]; }; @@ -9050,62 +9187,63 @@ in with self; { obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; oc = derive2 { name="oc"; version="1.01"; sha256="12idrh4jxxq28lgqzr6jzgrvmmwysh5amzhmmaqn3yz49i17gcaf"; depends=[pscl]; }; - occ = derive2 { name="occ"; version="1.0"; sha256="1rpgq6mqrdzz52ln897f5k8yyz5i14s3lxqmy3nwsxf3q2bdf3yh"; depends=[]; }; + occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; oce = derive2 { name="oce"; version="0.9-23"; sha256="0k5h6k4y9bas2aqwkh1dkxmwgx4d41hxy87zfih5iq8ff61d03rr"; depends=[gsw testthat]; }; + oceanmap = derive2 { name="oceanmap"; version="0.1.0"; sha256="1kkjc213nn2ks7cqzchbmjvyp9hci8qndv8migpmyf5vjbm7d297"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; ocedata = derive2 { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; - odbc = derive2 { name="odbc"; version="1.1.5"; sha256="0wsi2sv51v4ij3b72lzn8jlsc5d45hyj4qmr4iygpimflqsibjqm"; depends=[BH bit64 blob DBI hms Rcpp]; }; - odds_converter = derive2 { name="odds.converter"; version="1.4"; sha256="13y3s04l2jvjhn1i4syz4y3q42ba8br0sp3mks5f5h4cp8w4j3wy"; depends=[]; }; + odbc = derive2 { name="odbc"; version="1.1.6"; sha256="146phrsks0hfd1bfxx452kkq7ximk3fwjz9lqg9fdykar5sr6vjj"; depends=[BH bit64 blob DBI hms Rcpp]; }; + odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; oddsratio = derive2 { name="oddsratio"; version="1.0.2"; sha256="0s9w5iqcabkc7lqdh27nmg7xnw2jpwik5djjlqxb6xgabzls97d6"; depends=[cowplot ggplot2 MASS mgcv]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; - odkr = derive2 { name="odkr"; version="0.1.3"; sha256="0vcpsykr4sq4rq721vyd3wbm4jzlldvvxqh75q7x7wwhjhrnr3qn"; depends=[Hmisc stringr]; }; odpc = derive2 { name="odpc"; version="1.0.0"; sha256="1mhak9drp0a7h1yrbk08cs00hbvkfkj8r1y6klhr40sdych4q506"; depends=[forecast gdpc Rcpp RcppArmadillo]; }; odr = derive2 { name="odr"; version="0.7.3"; sha256="07jfd809wv92ijgw1r1nq9516zi2rkf3ik243br42glf6lszn19p"; depends=[]; }; - oec = derive2 { name="oec"; version="2.5.2"; sha256="17np562cv6ln3j4b9iawyhbz8kfd5cy1ifj96kzyhv082jgpsk1s"; depends=[dplyr jsonlite magrittr readr servr]; }; + oec = derive2 { name="oec"; version="2.7.8"; sha256="0qi5xkyh5xgwcivihnc9wv96lzhdzlcz4zv08pvpxf7dx1qhafrj"; depends=[curl dplyr jsonlite magrittr purrr readr rlang stringr]; }; oem = derive2 { name="oem"; version="2.0.8"; sha256="08j9y9vq31skvdpg0kyqj50d77aijd2d95vcwm92df5vcvw9bpwz"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; - officer = derive2 { name="officer"; version="0.2.2"; sha256="1yixvlcz7mnf3w5kixd14zi0sa6vvydiqvlsnvj0zll8vplmcsij"; depends=[base64enc digest htmltools magrittr R_utils R6 Rcpp uuid xml2 zip]; }; - oglmx = derive2 { name="oglmx"; version="2.0.0.3"; sha256="02skdnf89ryl4d8ja1a9mj1jzzmjqjgfdcsf6v5dpjn1z9aycc6c"; depends=[maxLik]; }; - ohtadstats = derive2 { name="ohtadstats"; version="1.0"; sha256="1wpil3ag7vzinz4ky7jpzny88a4ycfifbhayyib9cldk8d0mbcgh"; depends=[lattice]; }; + officer = derive2 { name="officer"; version="0.3.1"; sha256="1qpy2srk4sqmnqmpaivgp5j5nc3b58mjbibzkq5nw784jni13jmj"; depends=[base64enc digest htmltools magrittr R6 Rcpp uuid xml2 zip]; }; + oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; }; + ohtadstats = derive2 { name="ohtadstats"; version="1.1.1"; sha256="1d011xcrn9zhb4pf9wkwlynvz3kkk95yk2l5qs352ra1dhki7b6k"; depends=[lattice]; }; oii = derive2 { name="oii"; version="1.0.2.1"; sha256="1n41hikn53ikyynsravg127cw5csa8s0s1l63w5hym7c6j625ya5"; depends=[Deducer gmodels rapportools]; }; okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; - olsrr = derive2 { name="olsrr"; version="0.5.0"; sha256="1id5z628bq91p3w64mq28bk247i6vb9ly1maqpf6fsfqiq2pavmv"; depends=[cli clisymbols crayon dplyr ggplot2 gh glue goftest gridExtra magrittr nortest purrr Rcpp recipes rlang shiny stringr tibble tidyr]; }; + olsrr = derive2 { name="olsrr"; version="0.5.1"; sha256="1kwscd1gxh1r3bsjmaanrm8jsi9gjggqmg629nmmlkx2ql5qcgja"; depends=[car checkmate cli clisymbols crayon dplyr ggplot2 gh glue goftest gridExtra magrittr nortest purrr Rcpp recipes rlang shiny stringr tibble tidyr]; }; omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; - ompr = derive2 { name="ompr"; version="0.7.0"; sha256="06zhmddg19sjnl18zmjjswggjg58rjgarqj2wqf5jf0g0qz3my2n"; depends=[dplyr lazyeval Matrix progress Rcpp]; }; - ompr_roi = derive2 { name="ompr.roi"; version="0.7.0"; sha256="1gcgwln7gfxd2jiqq3qbsiqircvjs8yhnxk9rcamim14x6gky4xg"; depends=[Matrix ompr ROI slam]; }; + ompr = derive2 { name="ompr"; version="0.8.0"; sha256="1nmd5wa1g2xzmwqfqf882bxcrmkxbb5b414cbbzvmqzfs34yk6bl"; depends=[data_table lazyeval Matrix progress Rcpp rlang]; }; + ompr_roi = derive2 { name="ompr.roi"; version="0.8.0"; sha256="1cbrchvpd31lxpxvw2l3q9k5jmffarb1shca8kwm76y5a6zxxq63"; depends=[Matrix ompr ROI slam]; }; oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; onemap = derive2 { name="onemap"; version="2.1.1"; sha256="0j9c0ynwpzyr548n72wzmmk8gi52qvxlxgzqzn8g6n4v5zmzlkhy"; depends=[fields ggplot2 maps Rcpp reshape2 tkrplot]; }; - onewaytests = derive2 { name="onewaytests"; version="1.6"; sha256="0xxqsqnk0s9w0xjj3ixghm9d1yg9fhq5lc5xyicfimnigb13hddl"; depends=[car ggplot2 moments nortest]; }; + onewaytests = derive2 { name="onewaytests"; version="1.7"; sha256="1lly2pxw08mmm4gqgj3wxa9ayhf90fyqjhnj8hcvr408k9p7bgsb"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.2-7"; sha256="17jx7saxcsahyyivln4v9fzzcmidy6ygjd9n81skv5jpr491zkgk"; depends=[]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-0"; sha256="1hqriwrlxhbi5v5wpqxfvvcb6np1iaarb3zf84ykfzi4llqqgz24"; depends=[lattice]; }; onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; }; - onnx = derive2 { name="onnx"; version="0.0.1"; sha256="0yzvgcpqad19sw9mhh3dfci1cqa7p3i1ssmpjyycy7rkqq8kb0xs"; depends=[reticulate]; }; + onnx = derive2 { name="onnx"; version="0.0.2"; sha256="0gyyaplq20cb0bilnmx0k2cm7yzrfvwsawdzs0bha1p5b83l003v"; depends=[reticulate]; }; ontologyIndex = derive2 { name="ontologyIndex"; version="2.4"; sha256="168m4jdwbzv8lpimx9063306691hnfdjmdhb5y8195d9vcq049jr"; depends=[]; }; ontologyPlot = derive2 { name="ontologyPlot"; version="1.4"; sha256="0sj1jg9lr1w3ahzw7fj86vp2bnvf4nq0x3hiqb3hzngwyj9bykpn"; depends=[ontologyIndex paintmap Rgraphviz]; }; ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.2"; sha256="1g1ag2bnfczdx2xyswrc9xbl9krnyibb4639wynm7c0lf2876964"; depends=[ontologyIndex Rcpp]; }; - oompaBase = derive2 { name="oompaBase"; version="3.2.5"; sha256="0269jmdw236jy008ic6iwg9y2fq674alqvd5zdvy1k2grxm72hvw"; depends=[cluster]; }; + oompaBase = derive2 { name="oompaBase"; version="3.2.6"; sha256="0lighs2546nyhpgbjsn4k53c7jw6xyla5b82v8jp3l1sqxj68a3s"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; - openCR = derive2 { name="openCR"; version="1.1.1"; sha256="0dmjisnxn9hdi2a4pb7qy367g4lmmlvnc8sll55dzjir472c3zm1"; depends=[abind MASS nlme plyr Rcpp secr stringr]; }; - openEBGM = derive2 { name="openEBGM"; version="0.5.0"; sha256="079wy3xrfdcmn0wd314rlrf4499qpdhsfq1m4b7s5y9c21h0raiy"; depends=[data_table ggplot2]; }; + openCR = derive2 { name="openCR"; version="1.2.0"; sha256="1wz31rnvdz1s253krf423ipkmfsxia66d5adnbyp3r59mc48yh1k"; depends=[abind MASS nlme plyr R2ucare Rcpp RcppParallel secr stringr]; }; + openEBGM = derive2 { name="openEBGM"; version="0.6.0"; sha256="0xzcdahfxdk1zjq6019yvr2mlhyqxbsqx6vd4w95mjq9h3bd5vmr"; depends=[data_table ggplot2]; }; openNLP = derive2 { name="openNLP"; version="0.2-6"; sha256="1173cng877sg6ynbs3csfnn956wwrq3yldhhzfbqdsz35draganj"; depends=[NLP openNLPdata rJava]; }; openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-4"; sha256="0j45rh9qki8r5wavaysrfsvb3wc3x8jjicqff2yi0r34j58xvlv8"; depends=[rJava]; }; - openSTARS = derive2 { name="openSTARS"; version="1.0.0"; sha256="0arry24nkd50nkdnddzxagrpy4lky9smc4xr1nl6q9nwxyfgdskg"; depends=[data_table progress raster rgdal rgrass7 sp SSN]; }; - openVA = derive2 { name="openVA"; version="1.0.3"; sha256="09wbhl0g6q1rhi6yr3wpbns4ik7jalpagacn6am09i6zvmz8745j"; depends=[ggplot2 InSilicoVA InterVA4 nbc4va Tariff]; }; + openSTARS = derive2 { name="openSTARS"; version="1.1.0"; sha256="1cjws49r22cmdax136zcy3k35yzbajkm6pyfibgcw2iqdxy1vcxg"; depends=[data_table progress raster rgdal rgrass7 sf sp SSN]; }; + openVA = derive2 { name="openVA"; version="1.0.4"; sha256="1lfc8h64y7zlcyf30pw0zrmzrjh4x4kkij0awmwwzhw402cvb16r"; depends=[ggplot2 InSilicoVA InterVA4 InterVA5 nbc4va Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.3-0"; sha256="0kfikssvmdg1r7j1z80hw7pa66rs06cki211rhmv0f12m500zl0c"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr RColorBrewer Rcpp rlang tidyr]; }; + openair = derive2 { name="openair"; version="2.4-2"; sha256="1kaq0ww3829qh6wsnaa2asyyqmqhdgm9am70g0vphf7lp9vjk9x1"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr RColorBrewer Rcpp rlang tidyr]; }; opencage = derive2 { name="opencage"; version="0.1.4"; sha256="1lqs38lml73axsjlsjkmcsb2irgs40mjrx2cn3k0bjb63qyb9hf5"; depends=[dplyr httr jsonlite memoise]; }; opencpu = derive2 { name="opencpu"; version="2.0.5"; sha256="1bs2z3y2zc3aqzfjh6bq3qrpzm106f5xhw7lbyng1bpcp4rch6y3"; depends=[brew curl devtools evaluate httpuv jsonlite knitr mime openssl protolite rappdirs sendmailR sys webutils zip]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; openintro = derive2 { name="openintro"; version="1.7.1"; sha256="059azlasdkmp8f54qpjf3mq5dyqakw0dgx0kx85wfdmhq38zal5n"; depends=[]; }; + opensensmapr = derive2 { name="opensensmapr"; version="0.4.1"; sha256="1yq0fxlfb203di2y0n23zfy4xyjy1ij52s4kp1fn44pb3gmqhndm"; depends=[digest dplyr httr magrittr]; }; openssl = derive2 { name="openssl"; version="1.0.1"; sha256="1qyql5gpwf88bkm1qarjhbqbq4hn6w0d8j4pxb5x7i96is30ap30"; depends=[]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; - openxlsx = derive2 { name="openxlsx"; version="4.0.17"; sha256="1mq4lasp12kc30sxcsmz9gskd114l8s7z7wd6svv2nm8qllrhsqi"; depends=[Rcpp]; }; + openxlsx = derive2 { name="openxlsx"; version="4.1.0"; sha256="1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb"; depends=[Rcpp zip]; }; opera = derive2 { name="opera"; version="1.0"; sha256="0p2wg3srg088l420ykrq0wqvzh1mp6l753rdw35f7kdmaj08mqfq"; depends=[quadprog quantreg RColorBrewer]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; @@ -9118,27 +9256,28 @@ in with self; { optband = derive2 { name="optband"; version="0.2.1"; sha256="1rv4r7h7x3xipav917cz9bcr6nqjzbinfrqxv8mcls9gdl9ha3y9"; depends=[LambertW]; }; optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optextras = derive2 { name="optextras"; version="2016-8.8"; sha256="03wqz16q8kn0ndk241h541fa0g5y0nrfg17vph85cm5xvzdd14cc"; depends=[numDeriv]; }; - optiRum = derive2 { name="optiRum"; version="0.37.3"; sha256="1g3kgfwa7ckh45v14qdi3gq9vy0zfpjaffcgpfapyylrsrnspy3f"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; - optiSel = derive2 { name="optiSel"; version="2.0"; sha256="1k8xbxabbzrlyqb12zdd3jyd8i1cfppah8m8sdkc40y02llgzgyv"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; + optiRum = derive2 { name="optiRum"; version="0.40.1"; sha256="1kl9mzh53pwhrxbn89dsjjpfji7k8vmysscd1qd9sw7vqdan8g6x"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; + optiSel = derive2 { name="optiSel"; version="2.0.1"; sha256="0bk2yf7wlkf2v76dybcqvqjy6n4cr72h0l05yfxba3zl8fw7r7na"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="0.1"; sha256="1wnpj7z0vqf91gzgz6r2ympnljq4mczxnnyk3sq7gvf6df4ic2m1"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp Rcsdp shapes stringr]; }; opticut = derive2 { name="opticut"; version="0.1-2"; sha256="1j479wa7mlp62c2y7shha1w7ybhfy8wvjfaz27kmwd1f61ma1g0l"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; optigrab = derive2 { name="optigrab"; version="0.7.3"; sha256="1vd4b6mh4a137nvsbpx71jibfd67va1m8iya1gasqiflm6qzszcx"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; + optimParallel = derive2 { name="optimParallel"; version="0.7-2"; sha256="1b705gn0f3m3cn1hy5ga6qazvl2kvgc9dmnqky2px1zbkw2n3qy0"; depends=[]; }; optimbase = derive2 { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5bl3s3az1pcyhsz0cza5f8vdksy5gchwqplm8n"; depends=[Matrix]; }; optimization = derive2 { name="optimization"; version="1.0-7"; sha256="09s62ax3w8zijfp2cmh2lvdqbl3nijbjkwq4n3icasi53lzg2179"; depends=[colorspace Rcpp]; }; optimr = derive2 { name="optimr"; version="2016-8.16"; sha256="02dgwkcjhf6ciwb6x6gyk7nn4v2jras7l1icfd4pjbypiapwnck9"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-7"; sha256="1if32133556zwmijlz6085fg1h65442hy03lzia0ahap3yndqfqy"; depends=[optimbase]; }; optimus = derive2 { name="optimus"; version="0.2.0"; sha256="01njyjfrm6kjwx2qq41c0hsgxzydnrmr3538cpbfdn5i0z5blgyx"; depends=[mvabund ordinal]; }; optimx = derive2 { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[BB dfoptim minqa numDeriv Rcgmin Rvmmin setRNG svUnit ucminf]; }; - optional = derive2 { name="optional"; version="1.0"; sha256="1bh3w5mcv3rhlpklncwgjr0lmjhv164q17zls0xm00qr8knzm9kp"; depends=[magrittr]; }; + optional = derive2 { name="optional"; version="1.1"; sha256="13ajzybylw0q0x6yy6i8qr6l1ar53cyl708zgqaqaj0lkj183zhz"; depends=[magrittr]; }; optiscale = derive2 { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; }; optismixture = derive2 { name="optismixture"; version="0.1"; sha256="0nacfbqlnzajp1hfhf0yzm2d86fxpp4kw2zy33q8k2d4sr56bird"; depends=[Matrix mvtnorm]; }; - optmatch = derive2 { name="optmatch"; version="0.9-8"; sha256="1fmk60yyrxgzi24f7a1r7vsbny8064ibm8dmx2h4xvslc1ynxa4c"; depends=[digest Rcpp RItools survival]; }; - optparse = derive2 { name="optparse"; version="1.4.4"; sha256="1ff4wmsszrb3spwfp7ynfs8w11qpy1sdzfxm1wk8dqqvdwris7qb"; depends=[getopt]; }; + optmatch = derive2 { name="optmatch"; version="0.9-9"; sha256="04w6ma1f09rjlz2qalfqk894pdkvqszr13n010y7015b3dsyqnkk"; depends=[digest Rcpp RItools survival]; }; + optparse = derive2 { name="optparse"; version="1.6.0"; sha256="1d7v5gl45x4amsfmzn5zyyffyqlc7a82h01szlnda22viyxids0h"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="2.3-0"; sha256="125b9sfdk4bdcj1vq5rxlrskv1zra31x8d96pdxnqvcnkmwxm4zh"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; - optrdd = derive2 { name="optrdd"; version="1.0"; sha256="0261dwx7g8vxpnwgr53g1qhlwf12sjrb3zb7d02viaxg8fpk61k7"; depends=[CVXR Matrix quadprog]; }; + optrdd = derive2 { name="optrdd"; version="1.0.1"; sha256="1nvrl04vg5ayrqqf6n3sb8jp37xifl5inh9nyr7pv6szckih6cd2"; depends=[CVXR Matrix quadprog]; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; opusminer = derive2 { name="opusminer"; version="0.1-0"; sha256="1m4gsjylz58pbmhgcy4l9hqdsgy8ra1zg0d3rb6h2qiwfyfm0yh4"; depends=[arules Matrix Rcpp]; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; @@ -9161,20 +9300,21 @@ in with self; { ordinalForest = derive2 { name="ordinalForest"; version="2.1"; sha256="1ancr7xdwhbqq3rj5hijrkjbrcaih8rqcx5r41mykrrp1k1s55dd"; depends=[combinat ggplot2 Rcpp]; }; ordinalNet = derive2 { name="ordinalNet"; version="2.4"; sha256="0c9k3p62d482sl0vg94xm6hllk2mic2nd1c5m4vhci5ycavqzdd3"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.0"; sha256="07gihg8hppxa7bp5wxcshqawj3vkzicmdsrnjyrasr3glv08b9lj"; depends=[rjags]; }; - ore = derive2 { name="ore"; version="1.6.0"; sha256="115s3wq7rrpmx65k9jlpf2x1d218gnl7vsc8zsvmjbsi4gfyliwf"; depends=[]; }; + ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.4"; sha256="1s8f8fpiyyxxqlcwa5pn2aj1iggf5r1q7zkvzsik6265krcsbqn6"; depends=[survival]; }; + ore = derive2 { name="ore"; version="1.6.1"; sha256="0hy1xm03zbmd336g9jjrkdsx1z7ai32jvj1hk8a7bj9wqb5rl8g5"; depends=[]; }; ores = derive2 { name="ores"; version="0.3.1"; sha256="12war455cfcn2llig7pkx05b70dp5y7warjq03ayqq6i7c945mhb"; depends=[httr]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; }; orientlib = derive2 { name="orientlib"; version="0.10.3"; sha256="1qi46hkz73b8722zc3w6wvsq1ydlk37yxn9rd1dqygqbs1svkmvv"; depends=[]; }; origami = derive2 { name="origami"; version="1.0.0"; sha256="0692n4javr0lwxcd0b83sbbhxbmxxs41sjvlsq5bc5l7n140qaca"; depends=[abind data_table future future_apply listenv]; }; - originr = derive2 { name="originr"; version="0.2.0"; sha256="06n5qshk4dq6ac4prnhzymz7gcmp6m2zdc8d9d13ii7n7xa0ymx2"; depends=[data_table httr jsonlite taxize xml2]; }; - orloca = derive2 { name="orloca"; version="4.3"; sha256="0mc337rjmdhrg6aw2pyiz68y311d6znh9ppl4k0v0rgavapw2aml"; depends=[png ucminf]; }; - orloca_es = derive2 { name="orloca.es"; version="4.3"; sha256="1yqwvzqlk70jfr9qb50g7xb4spnff4yg5rc9lw37zx13lnn4kcva"; depends=[orloca]; }; + originr = derive2 { name="originr"; version="0.3.0"; sha256="1r4w8gilr25gdqm3slviwas3s7qkpiyv4ifzp7qkby6vrdswnngb"; depends=[crul data_table jsonlite taxize xml2]; }; + orloca = derive2 { name="orloca"; version="4.5"; sha256="1zkd80b8rqy3x389c5pwsh0k8q6hy9bg4vvqs2xigxbprz4gyzl7"; depends=[png ucminf]; }; + orloca_es = derive2 { name="orloca.es"; version="4.5"; sha256="0lnv565c7g69649481w3rlnx0yya7bw9fkpwim9bs639flwh6w96"; depends=[orloca]; }; oro_dicom = derive2 { name="oro.dicom"; version="0.5.0"; sha256="05dmhfglp76apyilwicf3n2ylyjhp1gq6b9bnzsiiblpjnfpia43"; depends=[oro_nifti]; }; oro_nifti = derive2 { name="oro.nifti"; version="0.9.1"; sha256="19w9dzyfmfgxgxb5i0l06b6gzqksx879iwicfs76fwmb1q2ph540"; depends=[abind bitops RNifti]; }; oro_pet = derive2 { name="oro.pet"; version="0.2.6"; sha256="1dczii7knh9241ksswxk9zg1d69mhk2ilrk4kjv7cj9nfm8fgmja"; depends=[minpack_lm msm oro_dicom oro_nifti]; }; orsifronts = derive2 { name="orsifronts"; version="0.1.1"; sha256="1js4q2s1mn263x8szl5q47ajfxv9lsjd5zyphwyhbkqrnd8ijd3w"; depends=[sp]; }; - orsk = derive2 { name="orsk"; version="1.0-3"; sha256="0j8bz5kddzglcljycxy8lv8h5f6hvz88nzwq3b9cdyayd8mlbxs2"; depends=[BB BHH2]; }; + orsk = derive2 { name="orsk"; version="1.0-4"; sha256="0gbr758bnb4bpn0ndv3hkk1ny7kj5vc0w5hp540xc0g1car43ynw"; depends=[BB BHH2]; }; orthoDr = derive2 { name="orthoDr"; version="0.5.1"; sha256="0zpi3g6pkid40cblzsxck254wxljn5bfs354l51xfb182qr76x6k"; depends=[dr MASS plot3D pracma Rcpp RcppArmadillo rgl survival]; }; orthogonalsplinebasis = derive2 { name="orthogonalsplinebasis"; version="0.1.6"; sha256="07rbd0fhs2gsk7wj41y2h7wf6pfg324vzv2al753d8kqyx5ns2dj"; depends=[]; }; orthopolynom = derive2 { name="orthopolynom"; version="1.0-5"; sha256="1gvhqx6jlh06hjmkmbsl83gri0gncrm3rkliyzyzmj75m8vz993d"; depends=[polynom]; }; @@ -9182,24 +9322,26 @@ in with self; { osc = derive2 { name="osc"; version="1.0.0"; sha256="08ac64xqq3diw9xkialvxjvqk5khd3kjdxdi3zic2if05i3rb4ns"; depends=[raster]; }; osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; }; - osi = derive2 { name="osi"; version="0.1.0"; sha256="1wzkvsqifk0g29jnpvykn26myq27pxll3glqlp74djkz0rbpv7aa"; depends=[httr]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; - osmdata = derive2 { name="osmdata"; version="0.0.6"; sha256="1sjaqsj0jxipg00raj20gszzjspgpy9ja37rfkx6jpaa2wh3ii87"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp xml2]; }; + osmdata = derive2 { name="osmdata"; version="0.0.7"; sha256="0gpb8anvm9wmhvdkirhclkyppqz1sd5siclszigff11fw4bxnwj3"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp xml2]; }; osmose = derive2 { name="osmose"; version="0.1.1"; sha256="0fiijnrvvydhj6j9yb02rn5sg8arcpj3jz977m2zwjgqy878cffg"; depends=[rlist stringr]; }; osmplotr = derive2 { name="osmplotr"; version="0.3.0"; sha256="0w45riwwjigh1bxf9gx0wdj2yhdizwi6ydprp83pss2z9wph66yb"; depends=[curl e1071 ggm ggplot2 httr osmdata rgeos sp spatstat]; }; + osqp = derive2 { name="osqp"; version="0.3.1"; sha256="1q7f009xbl15prsn6l18fr307a7z76rw39z6fj380nliq6s5s56z"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="3.1.1"; sha256="14rf5m2pm5w414v2l1dvd6vlvirms93l8rkfbmgcvxwxmc52b187"; depends=[gepaf jsonlite raster RCurl rgeos sp]; }; - osrmr = derive2 { name="osrmr"; version="0.1.28"; sha256="0db8db7hkpc3rl7193gldmjz6ikm2m21d11ff9jmf7l8x0shg38i"; depends=[assertthat bitops R_utils rjson stringr]; }; + osrmr = derive2 { name="osrmr"; version="0.1.29"; sha256="1mkc39v56m7b89nbjzs50kzz8w1i1950gciiw7iyqpdj6g2knwdx"; depends=[assertthat bitops R_utils rjson stringr]; }; otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; otrimle = derive2 { name="otrimle"; version="1.1"; sha256="0c3wlj6cxpikrfr0knldd1z2kfihpfsppnyb9n3rflnxhk7pwij2"; depends=[doParallel foreach mclust]; }; - otvPlots = derive2 { name="otvPlots"; version="0.2.0"; sha256="1halgpk5ld5ihz0da69wf72l0624r73h2wjc0zjn8b8kw1v9xgzs"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; }; + otuSummary = derive2 { name="otuSummary"; version="0.1.0"; sha256="15sjjkivh37kjcj02s2l8xabn3x1kg348i69kyhbvsbqawh2s9y0"; depends=[fossil reldist reshape2 vegan]; }; + otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; }; ouch = derive2 { name="ouch"; version="2.11-1"; sha256="0xkwwi62vdahlcg3k32zb1nfwsx87zdssk79mvcxgfsw9bw4gahx"; depends=[subplex]; }; outbreaker = derive2 { name="outbreaker"; version="1.1-8"; sha256="0przz78jzkwl580w83p0aigaykfki2hdzprwqic7dy6yxnpqlpm3"; depends=[adegenet ape igraph]; }; outbreaker2 = derive2 { name="outbreaker2"; version="1.0.1"; sha256="1v49i9z4kx9l485ib5q91s4z6r03lyijzjrr9zyjgham59rncyij"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; }; outbreaks = derive2 { name="outbreaks"; version="1.3.0"; sha256="1k0g9x6wvdw8lkpjiv8z1ijp6pg5hri3gawx7zfpnm05g6ncvg81"; depends=[]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; - overlap = derive2 { name="overlap"; version="0.3.0"; sha256="09xa4v0g97rn7xjf6m8fb53h2cna5l1p20b72v0hgrhawvxbjmry"; depends=[]; }; + overlap = derive2 { name="overlap"; version="0.3.2"; sha256="1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="1.5.0"; sha256="1xqpkyxpdzcvq7s2hzkbnfddffjfs1xrxhrkvl5i4qv1czdsphjn"; depends=[ggplot2]; }; + overlapptest = derive2 { name="overlapptest"; version="1.0"; sha256="1p5xbqbl1kpvx7rjb335k7hfc8i9b13p2r2rr6rrjfa8zs74smml"; depends=[spatstat]; }; owmr = derive2 { name="owmr"; version="0.7.2"; sha256="0206i5zzmfjdd43qziis6kqc0zsvn0l7v5sspjrywjxw2gyjfmwb"; depends=[httr jsonlite magrittr]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.0.0"; sha256="19inf2bcpfj4jzfym1v5f1w5fkmcycz5jrfc2hf0wsvixy53lfxa"; depends=[jsonlite stringr]; }; oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; }; @@ -9213,7 +9355,7 @@ in with self; { pKSEA = derive2 { name="pKSEA"; version="0.0.1"; sha256="1k9javxbhx28hf5k3i66ggqwlws2w9qwp01g8f7jmyp92pxr3qqd"; depends=[]; }; pMineR = derive2 { name="pMineR"; version="0.31"; sha256="1j71dcldzmk4kzspx4v5s3vqqkllgwkckfm1g145qgg26c1gyc6l"; depends=[cluster DiagrammeR stringr XML]; }; pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; - pROC = derive2 { name="pROC"; version="1.11.0"; sha256="1v61z529yj1bp7wcagyhx0jszla9hv0aq1zvxz9w19r7lcinlzjz"; depends=[ggplot2 plyr Rcpp]; }; + pROC = derive2 { name="pROC"; version="1.12.1"; sha256="05ad69a6fxy9k903cw3h4q59ch2jv6qfg9yjdbw3cgiiazcafrlj"; depends=[ggplot2 plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; pSI = derive2 { name="pSI"; version="1.1"; sha256="0cvw38dqqlyx7cpl27hq33f5xns2d0019lyr98pwndcnbp09mx0b"; depends=[gdata]; }; pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; @@ -9223,14 +9365,15 @@ in with self; { packHV = derive2 { name="packHV"; version="2.1"; sha256="1phwcm1m9in0nkyk3hminbm60iw9jp7vyd7gn871g8shfdm8ixyw"; depends=[survival WriteXLS]; }; packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; packagedocs = derive2 { name="packagedocs"; version="0.4.0"; sha256="0zw9ana7s42ardphhdaklba02yjj1v8gliq4l98397mjmzc6f4xd"; depends=[crayon devtools digest evaluate highlight htmltools lazyrmd magrittr rmarkdown stringr whisker yaml]; }; + packagefinder = derive2 { name="packagefinder"; version="0.0.7"; sha256="030s8r2k0q3vls6vndmdz8a45kqrqx9whqvrcbh3f6xgy1vhs1hs"; depends=[formattable httr jsonlite pander stringr]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; - packcircles = derive2 { name="packcircles"; version="0.3.1"; sha256="0f2y651i96sa7b7mfxg5kinmhhzvcv18lia74fdpdnmc6fxlxg17"; depends=[Rcpp]; }; - packrat = derive2 { name="packrat"; version="0.4.9-1"; sha256="1kk6hs88y5jqgd781kk5jn5467r7sfyqd225vibflbz0s42rcv5a"; depends=[]; }; + packcircles = derive2 { name="packcircles"; version="0.3.2"; sha256="1hqzvhk8zm95vsrvf6bifxkgdgik8hixylslfvzpfcq378zi97yb"; depends=[Rcpp]; }; + packrat = derive2 { name="packrat"; version="0.4.9-3"; sha256="0d42x4qvz9hs7s5sl2lhklsdc8imrnp2k800xdagrpjilww9jac7"; depends=[]; }; pacman = derive2 { name="pacman"; version="0.4.6"; sha256="1vdak1hv3j44dsj6cckzc1a86dg933jqhxdys8fyxacmk101l388"; depends=[devtools]; }; paco = derive2 { name="paco"; version="0.3.2"; sha256="0qf692fqlq0d7hh9yllywaswmj5spy6q1r67nzkhgyh311nhjh6c"; depends=[plyr vegan]; }; pacotest = derive2 { name="pacotest"; version="0.3"; sha256="135637bidfx71xay6c69lfjvr4i0v3ckgkg0fi838p24is6icbix"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; pact = derive2 { name="pact"; version="0.5.0"; sha256="043hbydj5f6889xrfsrn8jrgid2nnbsz6d7jpn4hywwa97snw4ny"; depends=[glmnet survival]; }; - padr = derive2 { name="padr"; version="0.4.0"; sha256="1liks4cj1cyzf6ls2h8f68xd7nry6y9ml3zdmw1fsax251dhmbq4"; depends=[dplyr lubridate Rcpp rlang]; }; + padr = derive2 { name="padr"; version="0.4.1"; sha256="0nxclaxg31hddl2yhhm5886g7fc4j7g294ibv6hxb1cm5mrfgngy"; depends=[dplyr lubridate Rcpp rlang]; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; }; pagenum = derive2 { name="pagenum"; version="1.1"; sha256="0908rlr9sd1a2qwz0idw8ccxhji73sk24gyrdl071lpnd1rs2wl7"; depends=[]; }; @@ -9240,17 +9383,18 @@ in with self; { pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; }; pairsD3 = derive2 { name="pairsD3"; version="0.1.0"; sha256="0ql6pqijf24pfyid52hmf5fmh4w1ca3sm47z9vknqpnjbn47v8q2"; depends=[htmlwidgets shiny]; }; pairwise = derive2 { name="pairwise"; version="0.4.3-2"; sha256="1kb73jsfyp1daqbrmpwh8l9j28fgiapimfwdypz82m46wza1qgww"; depends=[]; }; - pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-25"; sha256="0wpv22db63xkgjw0nwa39clgrr2finxvl0a510hkc54ijqjx9ksh"; depends=[binMto boot coin MASS MCPAN mcprofile mratios]; }; + pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-26"; sha256="0dislkyvzckkxl2ccdpalyfbp4pfs6yvzwr175h2xcbzm5jjf35j"; depends=[boot coin MASS MCPAN mcprofile]; }; palaeoSig = derive2 { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[MASS mgcv rioja TeachingDemos vegan]; }; + palasso = derive2 { name="palasso"; version="0.0.1"; sha256="00vwp0xbnp8fj8g7qn81r4j15vwp26pjjh51hc8syi8l7457alhm"; depends=[glmnet Matrix survival]; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; paleoTS = derive2 { name="paleoTS"; version="0.5-1"; sha256="18f5lkgzvndc8s7w7d7dfdlqf37adrmzabpwkavjw1zkpb1dga8c"; depends=[doParallel foreach iterators mnormt]; }; paleobioDB = derive2 { name="paleobioDB"; version="0.5.0"; sha256="195w0jzg8bhlqbsd3shi161wqr9cff6q85ik0x8w4laazzxs0jhr"; depends=[gtools maps plyr raster RCurl rjson scales]; }; - paleofire = derive2 { name="paleofire"; version="1.2.1"; sha256="0f2bvwc370fjpacv4ipjr1gk6l4ni3lg6da2549zn6hqca0hyjis"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; + paleofire = derive2 { name="paleofire"; version="1.2.2"; sha256="0mg03k3yf68js580ljvwcn7xfl0m1s408hb34a9h3mh3a5knm2zc"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; - paleotree = derive2 { name="paleotree"; version="3.0.0"; sha256="1nk7j3l310c9wh5mqf0zw4cg6wmvx4c8pl06ahkknx3imslar96q"; depends=[ape phangorn phytools]; }; + paleotree = derive2 { name="paleotree"; version="3.1.0"; sha256="1f90f6m6qgywxa134dv8rd43660vkr9n2s82wn0iwq7w89gqlcj2"; depends=[ape phangorn phytools]; }; palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; - palm = derive2 { name="palm"; version="1.1.0"; sha256="05r6hwkvsd30f5frqxh6k2f1p291s78kfh492lvdmcg8jwrnrvll"; depends=[gsl mvtnorm R6 Rcpp spatstat]; }; + palm = derive2 { name="palm"; version="1.1.1"; sha256="1fbc5ri5k152ww3cajjjclcas22mfvypfn3hdpkkmf307lvjaja3"; depends=[gsl minqa mvtnorm R6 Rcpp spatstat]; }; palmtree = derive2 { name="palmtree"; version="0.9-0"; sha256="0cd5p82gp2g1zq8kf9ybi4wa1r2jg4dbxbp5n01qs4apmyyncl4d"; depends=[Formula partykit]; }; palr = derive2 { name="palr"; version="0.0.6"; sha256="163c0kcsl0k3fp5q9afv3pb8246j2b3jzmd6g2vcgxb8nhs8wr2f"; depends=[]; }; pals = derive2 { name="pals"; version="1.5"; sha256="0zc4dw8ipvhdm2qvy71k16vf8fmjs08nqbvvdi1k8h4fs648ddhi"; depends=[colorspace dichromat mapproj maps rgl]; }; @@ -9258,10 +9402,11 @@ in with self; { pamm = derive2 { name="pamm"; version="0.9"; sha256="01dv70ca3zif2b2fkx4xjl24x9p9kc63wf0dj5agdjp5qgbkp1p5"; depends=[gmodels lattice lme4 lmerTest mvtnorm]; }; pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; }; pamr = derive2 { name="pamr"; version="1.55"; sha256="1hy3khb0gikdr3vpjz0s245m5zang1vq8k93g7n9fq3sjfa034gd"; depends=[cluster survival]; }; - pan = derive2 { name="pan"; version="1.4"; sha256="1p3nigmhrnlch86g89hn7l0wvkifx3k9n59g0psi95yck43kza76"; depends=[]; }; + pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; pander = derive2 { name="pander"; version="0.6.1"; sha256="1axknd1isfjg4wj5b1smvl7qr4wvjdw1kikrghjnp73xh0glr7pp"; depends=[digest Rcpp]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-1"; sha256="18n155rkbr3gq5lsb0bh1v1v0z0r6xr2ald3nh7xh3v9qwxpmsz1"; depends=[jsonlite]; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; + panelView = derive2 { name="panelView"; version="1.0.1"; sha256="1ianff9clc0318nk0xplnslfqi5sxn773qcvxv3axj247994xpay"; depends=[ggplot2 gridExtra]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; panelvar = derive2 { name="panelvar"; version="0.5.1"; sha256="1394lvvpzbcvm2mhxw68k784jyvsnzxiq787kdf4y4538lqgfx1n"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="0.6.0"; sha256="0dykacf5ckhck08rbk6l5kyw51i2p1ncy44agcxj79cr290cd5ck"; depends=[crul jsonlite oai png rappdirs tibble xml2]; }; @@ -9301,10 +9446,9 @@ in with self; { partitions = derive2 { name="partitions"; version="1.9-19"; sha256="1pklfnjdc094c8nzkqcdvqzdh8v3p5n8jbg4pf9678iw648saiyx"; depends=[gmp polynom]; }; partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; - party = derive2 { name="party"; version="1.2-4"; sha256="10i1zxk93c5asinxmi6af1jbw1j4a25d5hzg7viyh73grvlkw7bc"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; - partykit = derive2 { name="partykit"; version="1.2-0"; sha256="1zxgx0wrvn4fj2l6pjwmczj7n4232szm1kzfzaq5cn13qzndnk66"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; + party = derive2 { name="party"; version="1.3-0"; sha256="1ih3c85s40raq8a0cy952a3g31gf2iwnafy8ij1svzc4hgfzaw2m"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + partykit = derive2 { name="partykit"; version="1.2-2"; sha256="118zrf9015kh0gicma98ddm80qhicdlhri2h1nwz0wlng9hkyxbg"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; - pass = derive2 { name="pass"; version="1.0"; sha256="00dzwg2lnzmrrmzq3fyrs4axswgnsn7f62l2f2a8d8gyf8qzz3nf"; depends=[lars MASS ncvreg]; }; passport = derive2 { name="passport"; version="0.2.0"; sha256="1jiwivrz7781zmwxmw13rxl80cr9r5pinnk5bvqz8nhfmlx0zmgd"; depends=[]; }; password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; pastecs = derive2 { name="pastecs"; version="1.3.21"; sha256="0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"; depends=[boot]; }; @@ -9316,42 +9460,43 @@ in with self; { patentsview = derive2 { name="patentsview"; version="0.2.1"; sha256="104qq6cqvfk5m2yynpg5iwlp89y5qx18m20qp343mknxjbvqpjdg"; depends=[httr jsonlite]; }; pathClass = derive2 { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; }; - pathfindR = derive2 { name="pathfindR"; version="1.0.0"; sha256="1wwl7cxgdrvcyrzyv1jrhhp850fc512585ih5g24jmrfr6n0422h"; depends=[AnnotationDbi DBI doParallel foreach knitr org_Hs_eg_db pathview rmarkdown shiny]; }; + pathfindR = derive2 { name="pathfindR"; version="1.2.0"; sha256="1wf6wv9mdiagv3r4d5nviw8c2zxw7hlxa0mm9kk624g1qfhknnz2"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 knitr org_Hs_eg_db pathview rmarkdown shiny]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmox = derive2 { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; }; pathological = derive2 { name="pathological"; version="0.1-2"; sha256="07g7ps6zfxi98y98kwas95rr5ybfd4bpih5mhkjafc7bn99254n2"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_reflection assertive_strings assertive_types magrittr plyr stringi]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; patternize = derive2 { name="patternize"; version="0.0.1"; sha256="0xmz7ca555275a4x89vdmyk9x3m3sk964iwspv0dnxsmx5s1xmz7"; depends=[abind Morpho raster rgdal RNiftyReg sp]; }; - patternplot = derive2 { name="patternplot"; version="0.2"; sha256="15kvihsyabg8l4458hqyg2dzaj37lshk5jx019vvzr9rjbcznj17"; depends=[dplyr ggplot2 gtable jpeg png R6 Rcpp RcppParallel]; }; + patternplot = derive2 { name="patternplot"; version="0.2.1"; sha256="0ixb9x32fciwxwxnna47z9jb6s1zf3d9jqfiwvv4slaygi2cgydr"; depends=[dplyr ggplot2 gtable jpeg png R6 Rcpp RcppParallel]; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; pavo = derive2 { name="pavo"; version="1.3.1"; sha256="1vr3crp71dibm3jn88wh4gdia2l3z4aqmfns7v5pllqadk9s1064"; depends=[geometry mapproj pbmcapply rcdd]; }; pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; pawls = derive2 { name="pawls"; version="1.0.0"; sha256="01sf1cmd216ca5iwmw4hfnxi9lvh16r441cfcaa3n77zhq0i4w7n"; depends=[]; }; pbapply = derive2 { name="pbapply"; version="1.3-4"; sha256="0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd"; depends=[]; }; - pbatR = derive2 { name="pbatR"; version="2.2-9"; sha256="1p8rj0lzm4pp1svgy7xia2sclkngzfjbgbikq94s6v92d582wncw"; depends=[rootSolve survival]; }; + pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbdBASE = derive2 { name="pbdBASE"; version="0.4-5.1"; sha256="0ghdq8ry6fiq8qj3plq2n8isjx6iacnhqd1z73bjckmvp99g221n"; depends=[pbdMPI pbdSLAP]; }; pbdDEMO = derive2 { name="pbdDEMO"; version="0.3-1"; sha256="0vr3dvvhr8j6xvdf308nn37y0lkl2ysm93yf0h7rclvqvsk1pf66"; depends=[pbdBASE pbdDMAT pbdMPI]; }; pbdDMAT = derive2 { name="pbdDMAT"; version="0.4-2"; sha256="1xiwfpi8r0l8jlfrc35aknm09y4qbn0hvvkscdpcxv9q7zifvl3v"; depends=[pbdBASE pbdMPI]; }; - pbdMPI = derive2 { name="pbdMPI"; version="0.3-5"; sha256="1i970p74j53bnvqwv4ac03i7rbwp9ixbq1qbcv2x878wwz6fkcc2"; depends=[rlecuyer]; }; + pbdMPI = derive2 { name="pbdMPI"; version="0.3-6"; sha256="105nny9d4vm61iarckwf0x6lngkmg3jxys7nigshywhp91073ygk"; depends=[rlecuyer]; }; pbdNCDF4 = derive2 { name="pbdNCDF4"; version="0.1-4"; sha256="0fd29mnbns30ck09kkh53dgj24ddrqzks4xrrk2hh1wiy7ap1h95"; depends=[]; }; pbdPROF = derive2 { name="pbdPROF"; version="0.3-1"; sha256="0a7c31605si062vbwcwngv770axlwyhh00cvdfqw3hv421p61sj8"; depends=[]; }; - pbdRPC = derive2 { name="pbdRPC"; version="0.2-0"; sha256="0qndlgv6r9k17mz75g7d2k5alg0qp5h7scpnz2zl6kqlpr8z6l2p"; depends=[]; }; + pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; }; pbdSLAP = derive2 { name="pbdSLAP"; version="0.2-4"; sha256="0wl8iir00nyb4j0sm8nssmgb2xhr8g2064pql0s72cgbzkq1k1cm"; depends=[pbdMPI rlecuyer]; }; - pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-2"; sha256="0dzwwffinn9bbb73dmmh88c374f9057bl0a8dq97fbv63j4a5qpc"; depends=[]; }; + pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-3"; sha256="1jkfcfhspvqra7vbllrvkz3jx8j7d0ang6zzcdjgpb7200sc29mf"; depends=[]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; pbkrtest = derive2 { name="pbkrtest"; version="0.4-7"; sha256="1si3bhi59xc51a0pgjjglccq3h4aljyhw2k1b8574s145fnh7fsw"; depends=[lme4 MASS Matrix]; }; pbm = derive2 { name="pbm"; version="1.1.0"; sha256="054navz4fmn25nq3lsfnsnm35shj9wq4qz69d4ajw0q09gnb1cy8"; depends=[]; }; - pbmcapply = derive2 { name="pbmcapply"; version="1.2.4"; sha256="0wh0ljy9nbb7ifh06bf79hwc2ci9482hdppgpa1zpz8x2mgyvy04"; depends=[future]; }; + pbmcapply = derive2 { name="pbmcapply"; version="1.2.5"; sha256="0bnw1x6p4rq7ckl1i1yqi317dfy24gbd56y1v7m0ycvld6srjh5n"; depends=[future]; }; pbo = derive2 { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; - pcIRT = derive2 { name="pcIRT"; version="0.2.2"; sha256="0sf6kkcsblc758sb1gkl4ryr72w0xhkd9nr4xdns8c9dfg9qcw1h"; depends=[combinat Rcpp]; }; + pcIRT = derive2 { name="pcIRT"; version="0.2.3"; sha256="1gr4rij7anvfzbs4pvzhvfl0msbm83qs5n588l4jbraxqynvmkaw"; depends=[combinat Rcpp]; }; pca3d = derive2 { name="pca3d"; version="0.10"; sha256="1bpm4sbj7h2fd0h5ybjhq8g61l8v2fbc92yiiascdgfili85zsf3"; depends=[ellipse rgl]; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; pcaL1 = derive2 { name="pcaL1"; version="1.5.2"; sha256="1f7481wn2c935llb9visfdlv958ixxqybp5r2dy7nm18jacf2a0l"; depends=[]; }; pcaPA = derive2 { name="pcaPA"; version="2.0.2"; sha256="14hi09qksr1z54l268yv4g2x5hlikir7zir4ccd9yi5z1918ksj5"; depends=[ggplot2 ltm mc2d polycor sfsmisc]; }; pcaPP = derive2 { name="pcaPP"; version="1.9-73"; sha256="1z2kdf9gfp965xbcd4rg6vf20d1bl443na0qjkpq7gmzpaq6cifa"; depends=[mvtnorm]; }; - pcalg = derive2 { name="pcalg"; version="2.5-0"; sha256="002y7b0r750nbnrg8w53q2fyvk13jk4jrqlf3f2777qw7si5vmz3"; depends=[abind bdsmatrix BH clue corpcor dagitty fastICA ggm gmp graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; - pccc = derive2 { name="pccc"; version="1.0.1"; sha256="1br157yip3cizd05rgw22shrvjz2jrd6kad3dkswayksx8wrnvhz"; depends=[dplyr Rcpp]; }; + pcadapt = derive2 { name="pcadapt"; version="4.0.3"; sha256="1kyvpfbzbg9ja6xrdj31baw50vixq2incg635kj3rnklvg4izfnx"; depends=[BH data_table ggplot2 magrittr mmapcharr plotly Rcpp robust RSpectra vcfR]; }; + pcalg = derive2 { name="pcalg"; version="2.6-0"; sha256="1xdcgihaz6xl33nb8yxj0dz0d2dmfjvlwl4rlizyxgf5l2c7dn9f"; depends=[abind bdsmatrix BH clue corpcor dagitty fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; + pccc = derive2 { name="pccc"; version="1.0.2"; sha256="0ha15prf6zaa2kq4hhaadr5s0mr765b4rpx4q608136sh3hps574"; depends=[dplyr Rcpp]; }; pcdpca = derive2 { name="pcdpca"; version="0.4"; sha256="0ys4hrin0w3f87d1d986wvrfkfwapzj9hz7d7v92r60ns74g7r5m"; depends=[fda freqdom]; }; pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; pcev = derive2 { name="pcev"; version="2.2.2"; sha256="1l0afcdzkxzkhkc8ln2fzi50hc7nfq46lg6hhx6rrzkb41w82iqw"; depends=[corpcor RMTstat]; }; @@ -9359,10 +9504,10 @@ in with self; { pch = derive2 { name="pch"; version="1.3"; sha256="13pfrvp539fz4hxp08yil93caw3cjdna7xnky5fqd0lhc84fwq76"; depends=[survival]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.6"; sha256="0rpd1bgg932xhj03fnskhbg7ni9nfd8qrvxvix8qmbgw8bwdsbgd"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; - pcr = derive2 { name="pcr"; version="1.1.0"; sha256="1rz9jxjs9s7kwg3aljfm1x2v7jsg94wawmhgs8va83g46pbl26g8"; depends=[broom devtools dplyr ggplot2 magrittr purrr readr tidyr]; }; + pcr = derive2 { name="pcr"; version="1.1.1"; sha256="1bm8c8ajb0imvnp8nwhskjkqdi4v9f11bsz2qdk45i5l2mq16kjc"; depends=[broom devtools dplyr ggplot2 magrittr purrr readr tidyr]; }; pcrcoal = derive2 { name="pcrcoal"; version="1.2.0"; sha256="0rd610ny8p7by3gi6kk130ii0qcswqsng5mzmxz8hrxqk0cs4c9x"; depends=[ape ggplot2 phylosim]; }; pcrsim = derive2 { name="pcrsim"; version="1.0.2"; sha256="04177xl513k01prmf93kha91dyxmb9v80d1y4lz73fxsifj6bhar"; depends=[data_table ggplot2 gWidgets mc2d plyr strvalidator]; }; - pcse = derive2 { name="pcse"; version="1.9.1"; sha256="07382jz75ywqr4q750rk66yf0j28k54plx281k1yi541la8vic57"; depends=[]; }; + pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pdR = derive2 { name="pdR"; version="1.5"; sha256="072ra8czfvgcgkbdfkjhbpk7f23zh717f9sh84vls9j0wyrai6hn"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.1"; sha256="0j68jmsm6c9pan195k0l0nm1ldbipl5ywlbwkz61dblspizh04iw"; depends=[ddalpha multitaper Rcpp RcppArmadillo]; }; pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; @@ -9371,11 +9516,12 @@ in with self; { pdfetch = derive2 { name="pdfetch"; version="0.2.3"; sha256="1fcjhq79dcbnghmkfpy1h29gcywr1hq91xij5f21wgp4xx465sha"; depends=[curl httr jsonlite lubridate readr reshape2 XML xml2 xts zoo]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.1.1"; sha256="0k62j6ilv8rmmmasqyb3hklhjqg22jiyx0sxd7f8n0xmlfcjgfqi"; depends=[pdftools tibble]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="1.6"; sha256="00m5x1n5kjzvc1wljfy8riq2srxjvklasnh6ps8a89zbgglhp5cv"; depends=[Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="1.8"; sha256="1yyhwr17bln59cr819igd7mxdy5mhqf5fwd68x8w3kgag0v0qyaz"; depends=[Rcpp]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; }; - pdolsms = derive2 { name="pdolsms"; version="0.2"; sha256="18gwr1xnm7jbqna911b7haa9sv1i2qvq18w00dkbnj796rh0h78f"; depends=[reshape2]; }; pdp = derive2 { name="pdp"; version="0.6.0"; sha256="12x9j3lwnss45wlafd5kc4nw293vhffijmgyafahqwz9if829m10"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; }; + pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; }; + peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; @@ -9391,14 +9537,12 @@ in with self; { pems_utils = derive2 { name="pems.utils"; version="0.2.17.8"; sha256="1qxsjzxb8gdw1hyxgd923s609k98pjdaxs6wm3pg4bl1w8sxqi8d"; depends=[ggplot2 lattice latticeExtra loa plyr RColorBrewer]; }; penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; }; penMSM = derive2 { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; }; - penRvine = derive2 { name="penRvine"; version="0.2"; sha256="0zjjc987anz5is7rxf17yqpgr44cx30pv790sdbd4rlzwdrzcjbw"; depends=[copula doParallel fda foreach igraph lattice latticeExtra Matrix quadprog]; }; - penalized = derive2 { name="penalized"; version="0.9-50"; sha256="0q60pgmx2wbnc7i1zf1i0sxn1zy257hl73ii0abx83zpcywq9vb6"; depends=[Rcpp RcppArmadillo survival]; }; + penalized = derive2 { name="penalized"; version="0.9-50.1"; sha256="0lhibn0bzdrlvdsp4ni0989jniyfbxnixh32g7qm5qwxf5jbky18"; depends=[Rcpp RcppArmadillo survival]; }; penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; penalizedSVM = derive2 { name="penalizedSVM"; version="1.1"; sha256="0zc36cgcrdy4rwhg4hhhahymqfalvc5v2zmqq56ikz5blln82qvq"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2017.12.08"; sha256="0pkd853dq7frp0f9aii99qpnx9mk4gzb73iykfa5q9bnp45z8qd0"; depends=[data_table geometry ggplot2]; }; pencopula = derive2 { name="pencopula"; version="0.3.5"; sha256="1cy36pprbrfabk9n3x4d1xbj1vd2dda7xq3ihj2hzniwn77j63wi"; depends=[fda lattice latticeExtra quadprog]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; - pendensity = derive2 { name="pendensity"; version="0.2.10"; sha256="023gl993jniv5r8l9nkaha7v6k2rb1hxm7z543dpr4186kjbi7zl"; depends=[fda lattice]; }; pense = derive2 { name="pense"; version="1.2.0"; sha256="0wilfjhkj5hrgm7mak1hvlk07wrr3f774w26vyvbwlm8xsxxsbzz"; depends=[Matrix Rcpp RcppArmadillo robustbase]; }; pensim = derive2 { name="pensim"; version="1.2.9"; sha256="10nrnxwfs41bhybs7j6xgnx0pq3c802n9k8irngmh8iy4w3wbhrq"; depends=[MASS penalized]; }; peperr = derive2 { name="peperr"; version="1.1-7"; sha256="01a6sxcmb8v2iz2xdwhdnr92k3w2vn3hr0hg9b6mkpzjf4n45q3k"; depends=[snowfall survival]; }; @@ -9410,7 +9554,7 @@ in with self; { performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; perm = derive2 { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; }; - permDep = derive2 { name="permDep"; version="1.0-1"; sha256="03va74vxzijy169pqf6qhpw4afb3r3ia5y0qcfqz1xjs2zmck7mj"; depends=[BB survival]; }; + permDep = derive2 { name="permDep"; version="1.0.2"; sha256="0dv740vnjy99rc6px8w4ngis3w6zc4c67m0bx2lh327sqb7q3zsd"; depends=[BB survival]; }; permGPU = derive2 { name="permGPU"; version="0.14.9"; sha256="10r2qxbvzjxv3520lrn6cwi5akhhwgkhz7yaqxi5vh2f5l0s49wy"; depends=[Biobase foreach RUnit survival]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.1"; sha256="06h1lqpmkg4ajjh4r837qp094h105n4mpvafnp2nsbv9yyayd4h8"; depends=[R2HTML xtable]; }; @@ -9418,6 +9562,7 @@ in with self; { permuco = derive2 { name="permuco"; version="1.0.1"; sha256="19spn5ra41v7s4ixdg5pbksfi8linhvhvfmllz72iw6wbzsw8m0m"; depends=[MASS Matrix permute]; }; permutations = derive2 { name="permutations"; version="1.0-2"; sha256="04lak21x0z1cskgm5w4xdyq59kmyrz64bwfpf332vfka54aiv8lk"; depends=[magic numbers partitions]; }; permute = derive2 { name="permute"; version="0.9-4"; sha256="1w8wzk1fg9q7wvisnfp2js70dg0m9wi12gkdhpyngpbdcgssahd5"; depends=[]; }; + permutes = derive2 { name="permutes"; version="0.1"; sha256="1m5596l80nyyzassiwb6zd2fnp2jglj5vkp9xsbp28swd0q2wd90"; depends=[ggplot2 lmPerm plyr viridis]; }; perry = derive2 { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; }; persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; personalized = derive2 { name="personalized"; version="0.1.5"; sha256="1id3ml5n7l7lgd029csn23ffrsqhm4g1id20hxqhqz4knknfxkkf"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; }; @@ -9425,49 +9570,49 @@ in with self; { perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; perturb = derive2 { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; }; perturbR = derive2 { name="perturbR"; version="0.1.1"; sha256="13in5xjv1854ihalyj4427ix4scc17b95iw72rcb4yivha9jgplq"; depends=[dils ggplot2 igraph mcclust]; }; - pesticides = derive2 { name="pesticides"; version="0.1"; sha256="1w180hqqav0mh9sr9djj94sf55fzh4r373a7h08a2nz9nyjpq09w"; depends=[]; }; petitr = derive2 { name="petitr"; version="1.0"; sha256="0i13zhdrdka0ij0khdzj6ylvvcn4wxvplb8a368i1s64cpgak30c"; depends=[]; }; - petrinetR = derive2 { name="petrinetR"; version="0.1.0"; sha256="0na8srzwi933bva9j3hrn4ji8s58dm28jpxw9q13mpahzch4r454"; depends=[dplyr visNetwork]; }; + petrinetR = derive2 { name="petrinetR"; version="0.2.0"; sha256="04alyjjnwgkbd4qigxki57v3hqa02vr1d5g7slp5njds1vk928ci"; depends=[DiagrammeR dplyr purrr visNetwork xml2]; }; petro_One = derive2 { name="petro.One"; version="0.1.3"; sha256="13bxd011lprimy5m3z08l4yng2fkp28b1ad1bqs0piffx5bxw13n"; depends=[cluster data_table dplyr ggplot2 graph magrittr RColorBrewer Rgraphviz rvest RWeka tibble tm urltools wordcloud xml2]; }; pewdata = derive2 { name="pewdata"; version="0.2.0"; sha256="17j8fdn9x6hannr91zyccya523z3zm03gr517xfcyrd0m486xnqb"; depends=[httr magrittr purrr rvest]; }; pez = derive2 { name="pez"; version="1.1-1"; sha256="14n9s604wwh07kjir5kw6sra6bbmnpg00h3zvli3zqd8lx892hm8"; depends=[ade4 ape apTreeshape caper FD Matrix mvtnorm picante quantreg vegan]; }; pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pgam = derive2 { name="pgam"; version="0.4.15"; sha256="12llflsb32dfvxl3nbyb9bsl9bmd35g5g163hd3axzmg1bgi21ls"; depends=[]; }; + pgbart = derive2 { name="pgbart"; version="0.6.11"; sha256="1xfbpbxqynglw7j311pmx3qsi40r0416yflklh0qggr3pq0qf88k"; depends=[BayesTree]; }; pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; pgirmess = derive2 { name="pgirmess"; version="1.6.9"; sha256="1i1qn68isaz2lbpqyydjgj9kri09aknza5qjn6m1wa1alyl7f611"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive2 { name="pglm"; version="0.2-1"; sha256="14hnlidf62kzcf83jc7k17n4hjjaj82scdwh8a7qxd056vygkqx2"; depends=[maxLik plm statmod]; }; pgmm = derive2 { name="pgmm"; version="1.2.2"; sha256="1z39148gvs5nndd54x2afpsqdyqd8apjgnxn0ndv2071aa8gyk1j"; depends=[]; }; pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; pgraph = derive2 { name="pgraph"; version="0.8"; sha256="1r784snci5m81qljfh1r3w8qzszmy0476zvsd1alh43afzg9zpr5"; depends=[energy glasso glmnet SAM]; }; - pgs = derive2 { name="pgs"; version="0.4-0"; sha256="1zf5sjn662sds3h06zk5p4g71qnpwp5yhw1dkjzs1rs48pxmagrx"; depends=[gsl R2Cuba]; }; ph2bayes = derive2 { name="ph2bayes"; version="0.0.2"; sha256="1xm7930gycxrz308dnfnp023yidqik52sbrli35f3773mnfcid2g"; depends=[Rcpp]; }; ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; }; + ph2hetero = derive2 { name="ph2hetero"; version="1.0.2"; sha256="0aphkdb0ka8lk9q3r4ivkv4hrn7xz62rgqdbpkcwh9s455n38nyi"; depends=[clinfun mvtnorm]; }; ph2mult = derive2 { name="ph2mult"; version="0.1.1"; sha256="0w3w18fkr9xzv6mpb00cz5id33zgsnl6s8zgjpchzvrhmpjpp437"; depends=[clinfun]; }; - phalen = derive2 { name="phalen"; version="1.0"; sha256="0awj9a48dy0azkhqkkzf82q75hrsb2yw6dgbsvlsb0a71g4wyhlr"; depends=[sqldf]; }; phangorn = derive2 { name="phangorn"; version="2.4.0"; sha256="0xc8k552nxczy19jr0xjjagrzc8x6lafasgk2c099ls8bc1yml1i"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; phantom = derive2 { name="phantom"; version="0.1.3"; sha256="0kgw65jziw5s03isq5ywmqijhkbik5i84k30hx5gbi0zzgj8y0h1"; depends=[gplots MASS NMF qusage RColorBrewer Rcpp RcppArmadillo]; }; phase1RMD = derive2 { name="phase1RMD"; version="1.0.8"; sha256="1wvlajsqb8y8f30asq1lyk87kmakh2risnky98g5gday765y90qa"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; }; phaseR = derive2 { name="phaseR"; version="1.3"; sha256="1hwclb7lys00vc260y3z9428b5dgm7zq474i8yg0w07rxqriaq2h"; depends=[deSolve]; }; + phateR = derive2 { name="phateR"; version="0.2.8"; sha256="17wlfdcfb14wxv3j45pd5672g5b2w858b65z6x3ck4hi2v8kz19v"; depends=[ggplot2 Matrix reticulate]; }; phcfM = derive2 { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; }; - pheatmap = derive2 { name="pheatmap"; version="1.0.8"; sha256="1ik0k69kb4n7xl3bkx4p09kw08ri93855zcsxq1c668171jqfiji"; depends=[gtable RColorBrewer scales]; }; + pheatmap = derive2 { name="pheatmap"; version="1.0.10"; sha256="1jzxs5hwbz3r0z2pp09i7fd14sndxnrbm3zibaac3kny4nzydzf7"; depends=[gtable RColorBrewer scales]; }; phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; }; phenex = derive2 { name="phenex"; version="1.4-5"; sha256="00lsymflbmlxzxz8rxcpc94pc9zmhybial9f2xkz98h6h45zgrjl"; depends=[DEoptim foreach]; }; phenmod = derive2 { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; pheno2geno = derive2 { name="pheno2geno"; version="1.4.0"; sha256="0fy8z6x1y0sakp07jb6zs0w0f86pbbllicj4qylxzfd5rpn1rqr0"; depends=[mixtools qtl VGAM]; }; - phenoCDM = derive2 { name="phenoCDM"; version="0.1.2"; sha256="1158ac6cjl83pnfxmklxjnh35nagx1c21iidawr1s7pqv858ixix"; depends=[rjags]; }; + phenoCDM = derive2 { name="phenoCDM"; version="0.1.3"; sha256="1cyqwc36zwa2a4ljy0xnqz0hhw0r98qk2an5y002lrchkqydplwp"; depends=[rjags]; }; phenocamr = derive2 { name="phenocamr"; version="1.1.0"; sha256="10k7z82skkf9l15a2b77ygg5lkg0x68z7xbkw4p3mgs68dd9ah63"; depends=[changepoint curl daymetr DT jsonlite leaflet plotly shiny shinydashboard zoo]; }; phenology = derive2 { name="phenology"; version="7.0"; sha256="1glbjm7i2kyl04k0sam29zy1lpzfq2mpkgg44jpnby8c9vz8pkmi"; depends=[HelpersMG lmf numDeriv optimx]; }; phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; }; phenopix = derive2 { name="phenopix"; version="2.3.1"; sha256="1yy163nh2b74m0v7f2gkgxaplvw4whs2h30bkw4chl0zyrcrci86"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster SDMTools sp stringr strucchange zoo]; }; + phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; - philentropy = derive2 { name="philentropy"; version="0.1.0"; sha256="19nrfkla64jbd46ig13ljy6k5dxiwq2mnsfn37sgy9sf4h8zzwk3"; depends=[dplyr KernSmooth Rcpp]; }; - phmm = derive2 { name="phmm"; version="0.7-10"; sha256="1ra5qf24qmwjf8cra9yh20i2s8jv0kzb1gyw96il8r5cdl20gbcz"; depends=[lattice Matrix survival]; }; + philentropy = derive2 { name="philentropy"; version="0.2.0"; sha256="1vqbvqa099zr1kdl1f46krgx1nvp7rj6mcii19w5dmjrdf8xv8mk"; depends=[dplyr KernSmooth Rcpp]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; }; phonics = derive2 { name="phonics"; version="1.0.0"; sha256="02bkw589iijlzbw0cbg9qhq99jij2p92cqrxa77chkly4naqkqds"; depends=[BH Rcpp]; }; - photobiology = derive2 { name="photobiology"; version="0.9.20"; sha256="0w4xcg9r6hn8lv8jkmfr1b2w2q30wxs6m3nv4409hy9rp77qgfcl"; depends=[caTools dplyr lubridate plyr polynom rlang splus2R tibble]; }; + photobiology = derive2 { name="photobiology"; version="0.9.21"; sha256="02516yl2fgfnswyfrhq8s229bniv81ml5vkdq7ap17a2g4v92hvc"; depends=[caTools dplyr lubridate plyr polynom rlang splus2R tibble]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.4.4"; sha256="14aiw5jxd6wnngy1rbbm85l0yx64nxrancal017wvr5n867c32d6"; depends=[photobiology]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.14"; sha256="1q0dd3szr06rm6zy2mkb37n4s37554x71jgkhmw88iiy58y2fkv5"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate pavo photobiology readr readxl tibble tidyr]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.3-1"; sha256="0inhl6ba1fzkak4752m60hkm6fzapzyz5kchvz18yv33dmm13v1c"; depends=[photobiology]; }; @@ -9488,14 +9633,14 @@ in with self; { phyloTop = derive2 { name="phyloTop"; version="2.1.1"; sha256="1n44kr3a9yg8yvy3m493zi04x6aiqm424fp2ls9yzyx1cga2h9nk"; depends=[ape igraph NHPoisson phylobase]; }; phylobase = derive2 { name="phylobase"; version="0.8.4"; sha256="00hh53ibr7ddck4rl1rz9bpjsvjym040c5f78l1yizv6q9rakhfp"; depends=[ade4 ape Rcpp rncl RNeXML]; }; phylocanvas = derive2 { name="phylocanvas"; version="0.1.3"; sha256="1l5br500lwwf7vp8wph5ykpkpqd15lypvhzy0c1cc8g8c6f7pckn"; depends=[ape htmlwidgets phylobase]; }; - phyloclim = derive2 { name="phyloclim"; version="0.9-4"; sha256="0ngg8x192lrhd75rr6qbh72pqijbrhrpizl27q0vr6hp7n9ch3zx"; depends=[ape raster]; }; + phyloclim = derive2 { name="phyloclim"; version="0.9.5"; sha256="107kilh0gwr84ig54g92zyk7zv553pky2bzpjqgf9fjwbm6fvmrs"; depends=[ape raster sp]; }; phylocurve = derive2 { name="phylocurve"; version="2.0.9"; sha256="1d01nwfpyh61r00dq6cnhxdwzk81jr3l6aa51dl1wck4cy0frscp"; depends=[ape doParallel drc dtw foreach geiger geomorph GPfit Matrix mvnmle phylolm phytools Rcpp RcppArmadillo rgl]; }; - phylogram = derive2 { name="phylogram"; version="2.0.1"; sha256="17032pr87cdyz2aynb17jspkghq64xivsf1ylky2niypz7xbz0i3"; depends=[ape]; }; + phylogram = derive2 { name="phylogram"; version="2.1.0"; sha256="1p4h5pirc0m5pzc18q0jk3mcmb5n48gdf9abz03vml3a209xxl2v"; depends=[ape]; }; phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; - phylolm = derive2 { name="phylolm"; version="2.5"; sha256="0bffqzba6kcv8jyya7pja10mjnklhihczljhmj8q0pdrmd6qgqp8"; depends=[ape]; }; + phylolm = derive2 { name="phylolm"; version="2.6"; sha256="0vah8ibicldi57wab4sk1kx7gdq6h34bm6swmxzhq7kikxfwmmyj"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; phylopath = derive2 { name="phylopath"; version="1.0.0"; sha256="1n6f7piygps3pwqapsvqpz764995kxhdqz1hc5n6znvl01ykdqx5"; depends=[ape dplyr ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble tidyr]; }; - phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.0.1"; sha256="0bxhikzrs5gcwkchpmxwvampyrbwv0d3ay5i7s766x6687xzm6qa"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; + phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.0.2"; sha256="1xgv2kf7j3ia5vk10r7w9588rfv7asdaf8f3yxwp5q7aqn3krm6q"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; phylosignal = derive2 { name="phylosignal"; version="1.2"; sha256="0apsg4v1n58wn8y8wnl6x1ahl903i29hh8bs2dw6ky2jafkjj4jb"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylosim = derive2 { name="phylosim"; version="3.0.2"; sha256="148zm43cgdhr264ffcabjx4abykks07jix6lypqysqy25fbmdngk"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; }; phylotate = derive2 { name="phylotate"; version="1.2"; sha256="19nssrdax5w5a50159j39jgs7305s48k3h56ivyzs5di6l7x1yxj"; depends=[]; }; @@ -9505,20 +9650,20 @@ in with self; { physiology = derive2 { name="physiology"; version="0.2.2"; sha256="0z394smbnmlrnp9ms5vjczc3avrcn5nxm8np5y58k86x470w6npz"; depends=[]; }; phytools = derive2 { name="phytools"; version="0.6-44"; sha256="1y815pv1cksj244vcb7q4qr45gzr4cb1qwi166h65ryggywcj48w"; depends=[animation ape clusterGeneration coda combinat maps MASS mnormt msm nlme numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; - picante = derive2 { name="picante"; version="1.6-2"; sha256="1zxpd8kh3ay6f3gdqkij1a6vnkr98dc1jib2r6br2kjyzshabcsd"; depends=[ape nlme vegan]; }; + picante = derive2 { name="picante"; version="1.7"; sha256="0qhaxxmab3c3qw06kx4swfyiqiiqail5h79aarvffryvh0qdgr3m"; depends=[ape nlme vegan]; }; picasso = derive2 { name="picasso"; version="1.2.0"; sha256="1bclrv0g2frdw6bfqacjbbzn9vg3354i2bh5zn6hkix7r8rqymzg"; depends=[MASS Matrix]; }; pid = derive2 { name="pid"; version="0.36"; sha256="1w6h09ddq8rv7k5xl4v6nhlkm0vnmim57mg0dzk2dv9dc4v8i141"; depends=[DoE_base FrF2 ggplot2 png]; }; - piecewiseSEM = derive2 { name="piecewiseSEM"; version="1.2.1"; sha256="0c705ngyj2pf24vvqdld5rnf875pw64gs64l9f7nylbfrax39kbv"; depends=[lavaan lme4 nlme pbkrtest]; }; + piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.0.1"; sha256="1pi0jii0yhmvy0rqlchlijrhvdqa07i4wzj4cdd25bbjnfy97ayc"; depends=[car lme4 MASS nlme pbkrtest]; }; pifpaf = derive2 { name="pifpaf"; version="1.0.1"; sha256="0wj1fbhd871fnw7fjlbh0gdjz848mbwl1bzjp3cgmh9s7jnd2kci"; depends=[ggplot2 gridExtra MASS matrixcalc numDeriv sfsmisc]; }; - pillar = derive2 { name="pillar"; version="1.2.1"; sha256="1ryd7m570y6q3w71wd5dz042b3d0dv24g2rbkw1kdx0n6jj9gsbd"; depends=[cli crayon rlang utf8]; }; + pillar = derive2 { name="pillar"; version="1.2.3"; sha256="1rzhssprqgam1nq3s0f5rzxhxsq02azcghvxf6k8kmsmddf1n7f8"; depends=[cli crayon rlang utf8]; }; pim = derive2 { name="pim"; version="2.0.1"; sha256="1m804clxc8m4nyzi4hhfy118527lgf2sb7589qd61fb83yh6hi8p"; depends=[BB nleqslv]; }; - pimeta = derive2 { name="pimeta"; version="1.0.0"; sha256="0ri6qznk3nj1a2nj9qdahlm452drzcb51x8g89ffb3y6xjsh6y5g"; depends=[Rcpp RcppEigen]; }; + pimeta = derive2 { name="pimeta"; version="1.0.1"; sha256="1l50k34xrnhfwwnwa7ym97blhqi84nkgcf9y5yg6hcg75ajgi6zl"; depends=[Rcpp RcppEigen]; }; pinbasic = derive2 { name="pinbasic"; version="1.2.0"; sha256="1sn4q9g2pw8z6gyxi302bd7p578ldy1g6419w56z7jgv7m8n7g73"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; }; pinfsc50 = derive2 { name="pinfsc50"; version="1.1.0"; sha256="1fja8xdqwsm4g223wmb2yg5fqmsg94hchzjd4qrqah1zb8vbdfdn"; depends=[]; }; pingr = derive2 { name="pingr"; version="1.1.2"; sha256="17fh2gjlmwy6wy8i24q76fivjig8jm05g9kvfz81q0h6b5zxnpmg"; depends=[]; }; pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; }; pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; }; - pinp = derive2 { name="pinp"; version="0.0.4"; sha256="1bjvhq9glrahknh46irfpg83wilpws923mm5l4aldb75xrbpliyw"; depends=[knitr rmarkdown]; }; + pinp = derive2 { name="pinp"; version="0.0.5"; sha256="12wypniib0pacgd3lvk64r1xy01yangjk9k2b2pkj8il4ycvijk4"; depends=[knitr rmarkdown]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; }; pipeR = derive2 { name="pipeR"; version="0.6.1.3"; sha256="16lj227x24pviqb4dcrj7a55l31p5mm0cbwsb6m3y3n6k5wcd2nh"; depends=[]; }; @@ -9527,31 +9672,35 @@ in with self; { pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; piton = derive2 { name="piton"; version="0.1.1"; sha256="1265y4lv2m5nwrh25sahjkxwmivpxgh9shrdidlmaman7zs6cclr"; depends=[Rcpp]; }; + pivot = derive2 { name="pivot"; version="18.4.17"; sha256="0nhf76f2g35cx5f1m00wsy29n6xm2x5wajs5myaasks7hbkk0w3y"; depends=[assertthat colorspace DBI dbplyr dplyr lubridate magrittr purrr rlang tidyr tidyselect]; }; pivotaltrackR = derive2 { name="pivotaltrackR"; version="0.1.0"; sha256="024srncm288mn3bz6hv7ljzkchmnljk4yc2d4z7i05vsn7dzd2c6"; depends=[curl httr]; }; pivottabler = derive2 { name="pivottabler"; version="0.4.0"; sha256="1q7gmfrqx3sn32q9rrr0y3hywq0fvm5gs5d3jj6mqcbs53jqvzqc"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; }; pixels = derive2 { name="pixels"; version="0.1.0"; sha256="0lna0z2shs49kh48ipjnyigaa22wb9gm4mq970ldhh9msb7wcv55"; depends=[htmlwidgets miniUI shiny]; }; - pixiedust = derive2 { name="pixiedust"; version="0.8.2"; sha256="0p04bs0p52k38qn1mv7qcsyilqbcaq3gnksvk9ij8j6r2qr4l8h4"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; }; + pixiedust = derive2 { name="pixiedust"; version="0.8.4"; sha256="0rq1q30x36p1135kv2s8nfshi8w73167dj14f4c5m3fczhljc7lr"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; }; pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.1.4"; sha256="0c44zrvpyz87s5mjhsqdrkyrvyzhyldnq371bwnn9crbpbac3wnd"; depends=[]; }; + pkgbuild = derive2 { name="pkgbuild"; version="1.0.0"; sha256="10iz8057mixl9j73pq2cbp4ib6dadfsgi3fcsjjm7l3wwb9issd9"; depends=[callr crayon desc R6 rprojroot withr]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.1"; sha256="0h2sp93fqqjbfqgq82a3i94ybnndx6ghaal8pbf99firnsjb40mb"; depends=[]; }; pkgcopier = derive2 { name="pkgcopier"; version="0.0.1"; sha256="04vpjf8nvqnpry54f1wwrnmipd5m6gqd89c3vkryqx88jk85jd8s"; depends=[httr stringr]; }; + pkgdown = derive2 { name="pkgdown"; version="1.1.0"; sha256="0w1f23d600j9s8sa5xq63j2p6pvch8nndcxc63s14szlfjlvmddd"; depends=[callr cli crayon desc devtools digest evaluate fs highlight httr magrittr MASS memoise purrr R6 rematch rlang rmarkdown roxygen2 rsconnect rstudioapi tibble whisker xml2 yaml]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.2"; sha256="0pzqlim84b22ahq5yr50ybffqa0f5k5ch372v37nw1ndzci211d8"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; - pkgmaker = derive2 { name="pkgmaker"; version="0.22"; sha256="0vrqnd3kg6liqvpbd969jjsdx0f0rvmmxgdbwwrp6xfmdg0pib8r"; depends=[codetools digest registry stringr xtable]; }; - pkgnet = derive2 { name="pkgnet"; version="0.1.0"; sha256="0f7xakl7vsx4byw6wfb1yw9bk95wrqsjs8wq6prg697zpdy3c7fw"; depends=[assertthat covr data_table DT futile_logger igraph knitr magrittr mvbutils R6 rmarkdown visNetwork]; }; - pkmon = derive2 { name="pkmon"; version="0.9"; sha256="1zcjz1h45qv81rwnjsgc9iwmrwpnsy917y7h66pz98wzszlxcsd2"; depends=[]; }; - pkr = derive2 { name="pkr"; version="0.1.1"; sha256="0mwrpkmf016lpwkjhhjpq7bw18mvshpyhwgmgqfrfl9gfbq4gphd"; depends=[binr foreign forestplot]; }; + pkgmaker = derive2 { name="pkgmaker"; version="0.27"; sha256="0spcamjncj78kzjps2rw4v1a4494yazv6xvhn0vmdflnypc8k8hp"; depends=[bibtex codetools digest magrittr registry stringi stringr withr xtable]; }; + pkgnet = derive2 { name="pkgnet"; version="0.2.0"; sha256="0rbwpmkphsy51zncy2pv2cnf7v2dpk8gf8qwmbz4iyiq94kqri6f"; depends=[assertthat covr data_table DT futile_logger igraph knitr magrittr mvbutils R6 rmarkdown visNetwork]; }; + pkr = derive2 { name="pkr"; version="0.1.2"; sha256="0m045dlcq3rls1w0smy4jvk3c57ckpqdv8xnz261k1gnnyjmz1k2"; depends=[binr foreign forestplot rtf]; }; pks = derive2 { name="pks"; version="0.4-0"; sha256="0fx7p2d83x0ip65aqp9dga59d9cggam8k79mi0drk5birzchqbcr"; depends=[sets]; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; pla = derive2 { name="pla"; version="0.2"; sha256="1qb71zjcxvs3zbfy0sryyxizwix0nw530zsfw661a8vm8sk054kw"; depends=[]; }; plac = derive2 { name="plac"; version="0.1.1"; sha256="08kqnjzbfygnbqvqg5wyw148kfhjqxy46y4vaiq9zzwzj58w8vzn"; depends=[Rcpp RcppEigen survival]; }; placement = derive2 { name="placement"; version="0.1.1"; sha256="1narjb90sb5prvzfv2x30bz8y9aq8hqggza91ghwi47m99vm1dg6"; depends=[base64enc digest jsonlite RCurl stringi urltools]; }; - plan = derive2 { name="plan"; version="0.4-2"; sha256="0vwiv8gcjdbnsxd8zqf0j1yh6gvbzm0b5kr7m47ha9z64d7wxch6"; depends=[]; }; + plan = derive2 { name="plan"; version="0.4-3"; sha256="0j3mvcy97r7adcs7q6z0w9ng74jcfwii1xp8kcl2cwbzs2fd425r"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; + planor = derive2 { name="planor"; version="1.3-9"; sha256="0hivy4iqfw896d2zmcx5c3rmlfj8fkqg1qn2x8mdlial3dzm3mz6"; depends=[bit64 conf_design Rcpp RcppArmadillo]; }; plantecophys = derive2 { name="plantecophys"; version="1.3-2"; sha256="1jj9rkhdmcnmp6fzbxmkfwmsdx2w7v923rv0xn5c5iv7wys7vwfm"; depends=[]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; plater = derive2 { name="plater"; version="1.0.1"; sha256="0v5b9r6iha18qvrjpbr1p8fy06nf31x63ch5cnb4axyqa0x5skpp"; depends=[dplyr]; }; - platetools = derive2 { name="platetools"; version="0.1.0"; sha256="1cx01hspha59w1vd33kv8prapjinfipv1ikli97zhxrcs45r6v07"; depends=[dplyr ggplot2 plyr RColorBrewer]; }; + platetools = derive2 { name="platetools"; version="0.1.1"; sha256="0k2b13izcpr638hkfar2b09r49gyll71dmbvl1sffqw80pnz2wx0"; depends=[dplyr ggplot2 plyr RColorBrewer]; }; playwith = derive2 { name="playwith"; version="0.9-54"; sha256="1zmm8sskchim3ba3l0zqfvxnrqfmiv94a8l6slcf3if3cf9kkzal"; depends=[cairoDevice gridBase gWidgets gWidgetsRGtk2 lattice RGtk2]; }; + plde = derive2 { name="plde"; version="0.1.2"; sha256="1g1b1sgyfxgfkjcr3sdkan8jd6r7yyi0izc83vyj11bdk08jx22h"; depends=[]; }; pleiades = derive2 { name="pleiades"; version="0.2.0"; sha256="1h3q4yf0w0al7n8l7ca4vgx2bhrrz8clli15svlds7n402s8rzp5"; depends=[crul DBI dbplyr dplyr gistr jsonlite rappdirs RSQLite]; }; pleio = derive2 { name="pleio"; version="1.5"; sha256="1y9nkv5bzfkzbl373405v3xq54nz37wjz9zkxfzl8ggr5i9lcbqy"; depends=[Matrix rms]; }; plfMA = derive2 { name="plfMA"; version="1.0.4"; sha256="0q6wiiknmgw812kcf9qq309zlizyry7ldn6m08lkw6xq6i4f4s85"; depends=[cairoDevice gWidgets gWidgetsRGtk2 limma RGtk2]; }; @@ -9559,7 +9708,6 @@ in with self; { plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plm = derive2 { name="plm"; version="1.6-6"; sha256="1a14a8zbqzm2a6z44haa0c23ax9j1jk72dhrkca8q0abbd5lkx85"; depends=[bdsmatrix Formula lattice lmtest MASS maxLik nlme sandwich zoo]; }; - plmDE = derive2 { name="plmDE"; version="1.0"; sha256="19xxi0zzpxcrsdrbs0hiwqgnv2aaw1q3mi586wv27zz6lfqcr9lr"; depends=[limma MASS R_oo]; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; pln = derive2 { name="pln"; version="0.2-1"; sha256="09zg7zwmmqpjr1j59lqsjf4blrkya9wfwddgzfm9rr5jxrzvqcv8"; depends=[]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; @@ -9568,22 +9716,23 @@ in with self; { plotGoogleMaps = derive2 { name="plotGoogleMaps"; version="2.2"; sha256="0qv57k46ncg0wrgma0sbr3xf0j9j8cii3ppk3gs65ardghs3bf6b"; depends=[lattice maptools raster rgdal sp spacetime]; }; plotKML = derive2 { name="plotKML"; version="0.5-8"; sha256="0rd9242li967w253xhfywg72d3v1n5dybjxldkjgdix17gddwn5k"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; }; - plotMElm = derive2 { name="plotMElm"; version="0.1.4"; sha256="17fif2rqsf4f9jr4s7nr7wikwg63nibz6yjkldf7yh1qqqfikd2g"; depends=[ggplot2 interactionTest]; }; - plotROC = derive2 { name="plotROC"; version="2.2.0"; sha256="08dszp08mvw7lpvznlq3xw5bayl05lmnf4v2pmy5snyyxd9zsv4x"; depends=[ggplot2 gridSVG plyr shiny]; }; + plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; + plotROC = derive2 { name="plotROC"; version="2.2.1"; sha256="0bk8j2lp80zcz4kkig1y5a1ig8vbjh7b4inzc46bn07ns1rdjgzg"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; plotfunctions = derive2 { name="plotfunctions"; version="1.3"; sha256="0cnmwkfjg45187j490sf01gxijhajrpi6j13hfckli2ysn6xrgz3"; depends=[]; }; plotluck = derive2 { name="plotluck"; version="1.1.0"; sha256="0arbvldg50lyn98vkrys1yjkkraz8jracwal4r2mlw991pnaikpp"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; plotly = derive2 { name="plotly"; version="4.7.1"; sha256="0wj9lw7w28z8w9ip9vadv6sydjhqyg65kfiai9m3bndzz50b1m3w"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr purrr RColorBrewer scales tibble tidyr viridisLite]; }; - plotmo = derive2 { name="plotmo"; version="3.3.6"; sha256="11v1jncw2x96j1f7nhv9sqvy3ia3035yh8slpy2ky7lf8ravjy58"; depends=[plotrix TeachingDemos]; }; + plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.1"; sha256="0if4cahihxm0b2k3r0w6qj91mwwsjy5zm289zk6myg65i7ijqly4"; depends=[]; }; + plotmo = derive2 { name="plotmo"; version="3.4.2"; sha256="19g3b0pjxzv1nd65q0aimgw16xyq451l8bgyfhvwxm30c4qyafd5"; depends=[plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; }; - plotrix = derive2 { name="plotrix"; version="3.7"; sha256="0rw81n9p3d2i03b4pgcfj5blryc94f29bm9a4j9bnp5h8qjj6pry"; depends=[]; }; + plotrix = derive2 { name="plotrix"; version="3.7-2"; sha256="0hx3xv94gzlyy7ny5k4mzs7w1798h1zka175m5bkzc524493cm88"; depends=[]; }; plotrr = derive2 { name="plotrr"; version="1.0.0"; sha256="07ilqpa3ypqb2gpnq23r9v4kkfxz06mcak9si9adr9sf6c7gqwxz"; depends=[dplyr ggplot2]; }; plotwidgets = derive2 { name="plotwidgets"; version="0.4"; sha256="1w7c9grw4pyyra230196yq32snr4wdg6xi8vh4dx5df2v500wz22"; depends=[]; }; pls = derive2 { name="pls"; version="2.6-0"; sha256="15j59p5x0rkdrk7iqzkipsy50rsyjl31w8zxc4w3v1j5gzxhi1rx"; depends=[]; }; - plsRbeta = derive2 { name="plsRbeta"; version="0.2.0"; sha256="1b8yldz5nzw3gilv9wk79bxcqb0hrgsxi2cn6qlby5nf9b4zmzv8"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; }; - plsRcox = derive2 { name="plsRcox"; version="1.7.2"; sha256="1c3ll13m27ndwlc9r79ilzl0i6cyp870x66swlbg6387whf7wn2r"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; - plsRglm = derive2 { name="plsRglm"; version="1.1.1"; sha256="1bx1pl1pv47z3yj3ngkd97j10v2h8jqiybcqbm3kvqhgqydm07rp"; depends=[bipartite boot car mvtnorm]; }; + plsRbeta = derive2 { name="plsRbeta"; version="0.2.2"; sha256="1ia3hngpzaav3gfcxajb1fxa2ljgbwd5xkrahc2bxi7wfdidngs5"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; }; + plsRcox = derive2 { name="plsRcox"; version="1.7.3"; sha256="17x79ihl9xpahva9ibbipyp1z9crvwm3y5g7ynxfjq7rjxwvw13y"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; + plsRglm = derive2 { name="plsRglm"; version="1.2.3"; sha256="0qf3nh3nw6psqr12zw9r5vagrlpwav3xiv3rh7xra13zx821kr4g"; depends=[bipartite boot car mvtnorm]; }; plsVarSel = derive2 { name="plsVarSel"; version="0.9.4"; sha256="19xz7ds4jx5ql999mwn9zs983rlshf14y4nlah8cfy9gpi0vl1g1"; depends=[bdsmatrix genalg MASS mvtnorm pls progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; plsdof = derive2 { name="plsdof"; version="0.2-7"; sha256="1z8z9m0nsnyy1fipzvm1srpxn3q6wjrlivmmki1f8plwkixkyc5y"; depends=[MASS]; }; @@ -9593,31 +9742,31 @@ in with self; { plspolychaos = derive2 { name="plspolychaos"; version="1.1-1"; sha256="078arfv8z5nfrmsfi0n7hskmv394ysi6nhlskpy5cg37lqiwh0r1"; depends=[lhs MASS]; }; pltesim = derive2 { name="pltesim"; version="1.0"; sha256="0mvqp8di2gwhd9wc9kvnnpxd3hkr9b9lj6g5qlkqcbrgkq6fjahs"; depends=[coreSim ggplot2]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; - plumber = derive2 { name="plumber"; version="0.4.4"; sha256="0fxbqp7x74x21dkkxklg7j0020pmvl9byfs9lgp1bxrnli84h6ik"; depends=[crayon httpuv jsonlite R6 stringi]; }; + plumber = derive2 { name="plumber"; version="0.4.6"; sha256="1c5pryslly2ibbfc65qlavbnnaksp3p18xr1cghwbw00kz4ig147"; depends=[crayon httpuv jsonlite R6 stringi]; }; plumbr = derive2 { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; plyr = derive2 { name="plyr"; version="1.8.4"; sha256="1igar5pcjqh0jyxv0z3jah8rz617vfa86vw0r5c7c031b7bj5db0"; depends=[Rcpp]; }; pmatch = derive2 { name="pmatch"; version="0.1.3"; sha256="1k83ysgc4dwms0k5knh2rj99l3kfclw9a29h2ksphy0g4r1ig9k3"; depends=[dplyr glue purrr rlang tibble]; }; - pmc = derive2 { name="pmc"; version="1.0.2"; sha256="1pamxg2cwyg36w0xnggrv5w03lb12l25z2da7xm1jvr17h0ipqmh"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; + pmc = derive2 { name="pmc"; version="1.0.3"; sha256="06bsab09i9ydgsjx5i50kdb22ldp4g1v83a01kz3mswybi4lv9w2"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.2-0"; sha256="1bpfix76ylmn5ds6y0v40mfad7znaa6dj5ngr4mzv96yy6mg13ns"; depends=[MASS pbdBASE pbdDMAT pbdMPI]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.2"; sha256="1dviqazdk3ggxwwyv20409w3qadka0gbcgviwyywssn2x4cg0vih"; depends=[mvtnorm Quandl]; }; - pmlr = derive2 { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqziag8y04cidlfiw7z969s4pkmgl"; depends=[]; }; pmml = derive2 { name="pmml"; version="1.5.4"; sha256="1acld1x0z5rgyxb5id071s3zvf2vbv4b9nngvxrb63ay3yyy124b"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.1"; sha256="1cxmp3fgsf3z71v6qpd9l9ilgda5knan7vqifxpgm8m7a30sp3f3"; depends=[]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; + pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmxTools = derive2 { name="pmxTools"; version="0.1.0"; sha256="1a242c85ywk026vb778s8bjc331ww11rb15pai02wbvpw9x4kpa0"; depends=[GGally ggplot2 magrittr MASS PKNCA plyr stringr XML xpose]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocrm = derive2 { name="pocrm"; version="0.11"; sha256="04snn7k8baf2ymjzr3zkxd425r5dq9h6abr5dm10mhfjqj1njpq0"; depends=[dfcrm nnet]; }; - poibin = derive2 { name="poibin"; version="1.2"; sha256="12dm1kdalbqy8k7dfldf89v6zw6nd0f73gcdx32xbmry2l2976sa"; depends=[]; }; + poibin = derive2 { name="poibin"; version="1.3"; sha256="0lkqxpk5f27ghjia2akzi1c51hk9p9qkw8vysa0qwkbsgasq86p3"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; pointRes = derive2 { name="pointRes"; version="1.1.3"; sha256="0yfzidc93ghpf116lxbx4fr0d71wl79y3nz6mkirx4pli6gb8x8d"; depends=[ggplot2 gridExtra plyr TripleR]; }; - pointblank = derive2 { name="pointblank"; version="0.1"; sha256="11v0x264065iljhv77m4yc44zqd0i9bg95c6qiv8d85nf97201hh"; depends=[digest dplyr Hmisc htmltools knitr lazyWeave lubridate magrittr mailR pixiedust purrr readr rJava rlang rmarkdown stringr tibble tidyr]; }; - pointdensityP = derive2 { name="pointdensityP"; version="0.3.3"; sha256="0ifkxxlmrrwscakmlap5bpfkzn4gfx9nc84p98i2spncnyd215ya"; depends=[data_table]; }; + pointblank = derive2 { name="pointblank"; version="0.2.0"; sha256="102ra763wwz0445wlvsr975ynrf4ywgggjw8hvwrqkjcvrk4rq8x"; depends=[commonmark DBI dplyr glue httr magrittr purrr readr rlang rmarkdown RMySQL RPostgreSQL stringr tibble tidyr]; }; + pointdensityP = derive2 { name="pointdensityP"; version="0.3.4"; sha256="0vv8j1yz8n2vmmp6bg2i8w3dchdbybsdxn3sk5d1ync2knih8l2s"; depends=[data_table]; }; poio = derive2 { name="poio"; version="0.0-3"; sha256="1smbnqjlicaqq2hswl910yiirzb9zikbk4pqxm9pwpixywj0nkys"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr R6 stringi tibble whoami]; }; poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; }; @@ -9627,11 +9776,11 @@ in with self; { poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; polidata = derive2 { name="polidata"; version="0.1.0"; sha256="07641v0dnn161kyxx7viplkf8c3r51hd4hd5pzmcph4y4387r01i"; depends=[jsonlite RCurl]; }; poliscidata = derive2 { name="poliscidata"; version="1.2.0"; sha256="0vn9wdlh3bi24mcq0r4ani2b0hhlg1za1z6fw8ikz7952gpacqk8"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; }; - politeness = derive2 { name="politeness"; version="0.2.2"; sha256="06h4g9xbk5dbaqzhybqc0mppa61ypb7ryi6hghqnqyj32y8r6dbr"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textir tm]; }; + politeness = derive2 { name="politeness"; version="0.2.4"; sha256="0r8wsghznbkdl3nn1rh7wi3l9zggdrvi2yjish7inkd8ygs4p8x1"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textir tm]; }; pollen = derive2 { name="pollen"; version="0.70.0"; sha256="1hk9sjxzwglj98ryic3m80lajzv1klnq9dl6i97c8f0ihbf97zdq"; depends=[dplyr lubridate purrr]; }; pollstR = derive2 { name="pollstR"; version="2.0.1"; sha256="13g5z1hix1bmsxznq5qx82yf445rvvyn67ch9bihxm1hr4cr4sbl"; depends=[httr lubridate purrr stringr]; }; - polmineR = derive2 { name="polmineR"; version="0.7.5"; sha256="0yz2c915jrf3dqadi6px9jidfwr4jd23rjrpas4xg4m6dx0f70jm"; depends=[data_table DT jsonlite Matrix pbapply R6 slam tm]; }; - polspline = derive2 { name="polspline"; version="1.1.12"; sha256="0chg5f6fq5ngjp1kkm4kjyxjc3kk83ky2ky5k7q3rhd8rkhd4szw"; depends=[]; }; + polmineR = derive2 { name="polmineR"; version="0.7.8"; sha256="18dg0p74drc9awgiwsy3wkdc3z350kvsdsjhnm35047kqg67v2bc"; depends=[data_table DT jsonlite Matrix pbapply R6 RcppCWB slam stringi tm xml2]; }; + polspline = derive2 { name="polspline"; version="1.1.13"; sha256="08hz6wlaipjss3cfk0dvr7yy6fc7cd4hqv9finj40kkm5n262xck"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.6.1"; sha256="16nr83gmv6pnk89nqxh8ihzacb0y8l4lz05c8sp6whmr26ja9vnf"; depends=[sp]; }; polyPK = derive2 { name="polyPK"; version="3.0.0"; sha256="1vdfsad2b9habvm2ikjgn7ihnm851q9lqmgqjlsl737ka1vsgisf"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls samr sqldf xlsx]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; @@ -9639,36 +9788,38 @@ in with self; { polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; polyapost = derive2 { name="polyapost"; version="1.5"; sha256="0r2h51l2y0sj0xahdzfy1lyq4kh166crh2j02sk85q577q9d883y"; depends=[boot rcdd]; }; polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-1"; sha256="1kw5c4dmgpkbk2a30hh5n6xqpnbh6q2swxsdjkmcmhkwrzm4ylm2"; depends=[lhs MASS]; }; - polyclip = derive2 { name="polyclip"; version="1.6-1"; sha256="07xxw5ik30ds18kv808hynzmz3w351k6lj4ifz9kak0s7xsaqfn3"; depends=[]; }; + polyclip = derive2 { name="polyclip"; version="1.9-0"; sha256="0c4xf5m1amig0glnq3nczrl3fww0g57xwkgb6qnkyc7l7chin9ac"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.7-9"; sha256="0d0756faksviic5jrc47fg6l3wsm9r2wlbnxiw08563rv7shbvb7"; depends=[Matrix mvtnorm]; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; polyglot = derive2 { name="polyglot"; version="0.1.2"; sha256="01sb3ilr58252yw0b2669vjdf8574br0n2n0ffwd86gc9f3islb3"; depends=[]; }; polymapR = derive2 { name="polymapR"; version="1.0.16"; sha256="0j9zsgm4v78scsl4bblrf2rs691296p1sdimqqzs03d56cgaky04"; depends=[combinat doParallel foreach igraph knitr MDSMap]; }; polynom = derive2 { name="polynom"; version="1.3-9"; sha256="1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk"; depends=[]; }; polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; }; - polysat = derive2 { name="polysat"; version="1.7-2"; sha256="0ahx2pvlv2vdfiskwgawcrp447249ha0dq4qkhav3hpyvdg3in38"; depends=[]; }; - polywog = derive2 { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; + polysat = derive2 { name="polysat"; version="1.7-3"; sha256="155zcrjvpnqdzakmxqds17wmn5kl4rrkv9bqlxq8hrrly3nf6ynz"; depends=[Rcpp]; }; + polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomp = derive2 { name="pomp"; version="1.16"; sha256="1ns1ygza76dqrrscm7ajv3pbf5wgvcfsfbjxc20b50z30zjm7712"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; + pomp = derive2 { name="pomp"; version="1.17"; sha256="0f7706hgpa70b5l1p34yq57fqyk4w55z8d5rvsv03m2cxilngc9k"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; pompom = derive2 { name="pompom"; version="0.1.4"; sha256="0j37gq6lfccypclhrp7w3yfgsjbhfgqwg7x87r6rgywz6b3fnsgh"; depends=[ggplot2 lavaan qgraph reshape2]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; - pool = derive2 { name="pool"; version="0.1.4"; sha256="0k209n40l2kwahy7b6hjwj1l19pdhnnq36jzxjmhv5zdad7dmckq"; depends=[DBI dbplyr dplyr later R6]; }; + pool = derive2 { name="pool"; version="0.1.4.1"; sha256="1a8kyfwylr8gl2z2w2fmf6657yqvw0ylf1pxg00flddf8fnwbh0w"; depends=[DBI dbplyr dplyr later R6]; }; poolfstat = derive2 { name="poolfstat"; version="0.0.1"; sha256="1g6qx4518cr77wdlbicda68jm2yji24h14mjv5sq7zq241h4ailh"; depends=[]; }; + pooling = derive2 { name="pooling"; version="1.1.1"; sha256="0011w80pxz01scj2sa69m1bcfq797hq3ihpw46fdlxsxavz8prwy"; depends=[cubature dplyr dvmisc ggplot2 ggrepel mvtnorm pracma]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; pop_wolf = derive2 { name="pop.wolf"; version="0.1"; sha256="19n00xv47v9j7slvm2ykzlksjfwjzimf88b3nk0y0192c29sdc9x"; depends=[abind]; }; - popEpi = derive2 { name="popEpi"; version="0.4.4"; sha256="010nsb3jlz769i8srkd3528a52h9gpw7q7gn4vraz9nx8g8585bs"; depends=[data_table Epi survival]; }; + popEpi = derive2 { name="popEpi"; version="0.4.5"; sha256="1155ck62avinpaaijgiad4crg5zkkq7npmlmzf7q05j4ssna9mvz"; depends=[data_table Epi survival]; }; popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popRange = derive2 { name="popRange"; version="1.1.3"; sha256="0kkz6va0p8zv3skaqqcpw42014d9x9x4ilx0czz91qf46h61jgb0"; depends=[findpython]; }; - popReconstruct = derive2 { name="popReconstruct"; version="1.0-4"; sha256="14lp0hfnzbiw81fnq7gzpr4lxyfh3g0428rm9jwjh631irz3fcc9"; depends=[coda]; }; - popbio = derive2 { name="popbio"; version="2.4.3"; sha256="1c34izyp6gpic3yv1rhg1snv2irw0bj9r1w9b892l7x0mxxmn2bl"; depends=[]; }; + popReconstruct = derive2 { name="popReconstruct"; version="1.0-5"; sha256="0fvrjb3b3bahi5da0ikzv164p49zvgm43mskqd7p9dgadbg1xpi2"; depends=[coda]; }; + popbio = derive2 { name="popbio"; version="2.4.4"; sha256="165rs8w9h71qip3aw47wq48xnzv8zg8ixm7r6qqmkg3knw095hwh"; depends=[]; }; popdemo = derive2 { name="popdemo"; version="1.3-0"; sha256="0760ajqaq822m0j092gdqzhgw1mk413k09mmmwyzb0jzj6bd15q3"; depends=[expm MCMCpack]; }; popkin = derive2 { name="popkin"; version="1.0.5"; sha256="147ic0d7cgs4x9vz4jm4wd6ckikn0s8a0q1mknmcrcfisq8zim75"; depends=[RColorBrewer Rcpp RcppEigen]; }; poplite = derive2 { name="poplite"; version="0.99.19"; sha256="0y1l21clp9b5m50chqnqmvyd6rsk6xgn2bqf1877gx3h1qidh5fm"; depends=[DBI dbplyr dplyr igraph lazyeval RSQLite]; }; - poppr = derive2 { name="poppr"; version="2.7.1"; sha256="01g2kcbrlnfw27yrvf3wzj68r5h8xif5baalx1rdfp16v49jkx34"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat rlang shiny vegan]; }; - popprxl = derive2 { name="popprxl"; version="0.1.3"; sha256="1l842zgn04s8ghbcp8s2lzg7lgc809xd7hg9crnyp23c2cr0jlvi"; depends=[poppr readxl]; }; + poppr = derive2 { name="poppr"; version="2.8.0"; sha256="132lfxcdqxhh3f09sdgwas4372yrqcflws936fqyp0isg59siyzx"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat rlang shiny vegan]; }; + popprxl = derive2 { name="popprxl"; version="0.1.4"; sha256="076aia4qbq5yw2nxafq2ys5n5c7wv77i8k1nmzb3all193vjf203"; depends=[poppr readxl]; }; popsom = derive2 { name="popsom"; version="4.2"; sha256="11d6z3qsq94k0557pnwa0h4pc718360lvg9jkblp8abnj52lcvvv"; depends=[class fields ggplot2 som]; }; poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; population = derive2 { name="population"; version="0.2"; sha256="1k0hwh17dyfbbyw8gprsz1klx6l2ncq5mxkmnjmknlnrkpah0bbl"; depends=[abind]; }; + populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.2"; sha256="00xfpfd1ly2cv82x5r9sy1h7gq2yhhw2gz0sw3z1cpk9vxzvr6d9"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; portes = derive2 { name="portes"; version="2.1-4"; sha256="09liy2bia76h5dh21s8skq9pj8k4wpq5agwrmr1pnvlpgc8m2b60"; depends=[]; }; portfolio = derive2 { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; }; portfolioSim = derive2 { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; @@ -9679,7 +9830,7 @@ in with self; { poweRlaw = derive2 { name="poweRlaw"; version="0.70.1"; sha256="04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"; depends=[VGAM]; }; powell = derive2 { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; }; - powerCompRisk = derive2 { name="powerCompRisk"; version="0.1.1"; sha256="0qsgibjzf6qx778s126c2k7nbf8f10gsh4cfkkhkxcv344rqxg10"; depends=[MASS mvtnorm]; }; + powerCompRisk = derive2 { name="powerCompRisk"; version="1.0.1"; sha256="11xprjn9hzi8gxrsi7wivwgchg9h2apgxa63fp466ngjfy5ybxf4"; depends=[mvtnorm]; }; powerEQTL = derive2 { name="powerEQTL"; version="0.1.3"; sha256="1045vkzl5p20mqlsm0j6vnyyvfz5v6jyy443c38sw1cps0a09i1n"; depends=[powerMediation]; }; powerGWASinteraction = derive2 { name="powerGWASinteraction"; version="1.1.3"; sha256="1i8gfsk9qzx54yn661i4x9k7n7b6r1jd808wv1hcq7870mzyb27k"; depends=[mvtnorm pwr]; }; powerMediation = derive2 { name="powerMediation"; version="0.2.9"; sha256="1rk8h8qn4b68ra5h5hiy9fvvbpskj9y806rwrvl1l7gs7xlmji7l"; depends=[]; }; @@ -9692,7 +9843,7 @@ in with self; { ppcc = derive2 { name="ppcc"; version="1.0"; sha256="022c8w7ws7fw6yy572rn6m8ki14d2ph7nd2hk2c6mmx2c4lbc20v"; depends=[]; }; ppclust = derive2 { name="ppclust"; version="0.1.1"; sha256="10fcyayda634lg5g992g21casqx5k0jni9r30km5rczzib7cz9gg"; depends=[inaparc MASS]; }; ppcor = derive2 { name="ppcor"; version="1.1"; sha256="1x9b2kb8s0bp92b17gby0jwzzr3i4cf3ap9c4nq7m8fav72g0y3a"; depends=[MASS]; }; - ppitables = derive2 { name="ppitables"; version="0.1.2"; sha256="1hw25zvvbmc6vxbhcrpz9xkwc6lbc9v1r77fil3gv2wm5n672s4h"; depends=[]; }; + ppitables = derive2 { name="ppitables"; version="0.2.0"; sha256="097rrkgv1xvn00gcmv9mfy4qwx4f4wjaj4j0c2az6smkhnzyr37n"; depends=[tibble tidyr]; }; ppls = derive2 { name="ppls"; version="1.6-1"; sha256="1r3h4pf79bkzpqdvyg33nwjabsqfv7r8a4ziq2zwx5vvm7mdy7pd"; depends=[MASS]; }; ppmlasso = derive2 { name="ppmlasso"; version="1.1"; sha256="1w13p1wjl1csds1xfc79m44rlym9id9gwnp3q0bzw05f35zbfryg"; depends=[spatstat]; }; pps = derive2 { name="pps"; version="0.94"; sha256="0sirxpagqc2ghc01zc6q4dk691six9wkgknfbwaqxbxvda3hcmyq"; depends=[]; }; @@ -9705,24 +9856,24 @@ in with self; { prais = derive2 { name="prais"; version="0.1.1"; sha256="0vv6h12gsbipi0gnq0w6xh6qvnvc0ydn341g1gnn3zc2n7cx8zcn"; depends=[]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; - praznik = derive2 { name="praznik"; version="4.1.0"; sha256="1f652s1gpc2sw2i9xd4ga22kpdbihwpkb3a8csvycm07dhgynv03"; depends=[]; }; + praznik = derive2 { name="praznik"; version="5.0.0"; sha256="01xbhcgvq6mf89ryh2gif7aa9956kpka3j4mqaxlglxs53vdrfnk"; depends=[]; }; prc = derive2 { name="prc"; version="2018.1-31"; sha256="0xvf1f202qwpjb1kh469jk45l592q7bfzngyi8ifry94bi7mphp7"; depends=[kyotil nlme]; }; prcbench = derive2 { name="prcbench"; version="0.7.3"; sha256="0xdmwjhxpcdaiqawhmlpr4ddlx22xk3rywa70jpm1vk5hc9pwivk"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; prcr = derive2 { name="prcr"; version="0.1.5"; sha256="1hfr0jijnj5nd25rh16i81bsz8kwz0q9vmn7bqgy467cwvypg9k2"; depends=[class dplyr ggplot2 irr lpSolve purrr tibble tidyr]; }; - pre = derive2 { name="pre"; version="0.4-1"; sha256="1pcc8njy43pfpszrgs782fgwsnh8h990giq8q7ra6vvwyhgza8m3"; depends=[earth Formula glmnet MatrixModels partykit stringr]; }; + pre = derive2 { name="pre"; version="0.5.0"; sha256="04dfn9nd0ikilz7cf7q0y7z5dn961jjg1gby7h46fixkwnf7fdfs"; depends=[earth Formula glmnet partykit rpart stringr]; }; preText = derive2 { name="preText"; version="0.6.2"; sha256="0pcnqssv542cfajzrqfsbq0jf628nnmcb3nryvd7d5wk4wdkji4q"; depends=[cowplot ecodist ggplot2 proxy quanteda reshape2 topicmodels vegan]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; precrec = derive2 { name="precrec"; version="0.9.1"; sha256="0kppl4x8ji8hzll5wss1nzlk8qvf4g78f14x4c2b8dcxjikgl939"; depends=[assertthat data_table ggplot2 gridExtra Rcpp]; }; predatory = derive2 { name="predatory"; version="1.2"; sha256="1qbkifx16ixzimshm8lsg3d1y7cj453ksn8cpwy03xql6b19r8x4"; depends=[readr stringr]; }; - prediction = derive2 { name="prediction"; version="0.3.2"; sha256="1a65006i4gs9syvc240zzhx91mvf49jy60grz375lq0bzkxy4ly0"; depends=[data_table]; }; + prediction = derive2 { name="prediction"; version="0.3.6"; sha256="19d7312f5lkqfglfvlgssnvyw7gl161s0xradcry44r1i6qp05j1"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.0"; sha256="1xmzdv35hxnslffkj8nbahhxrxmv7995pkdq2igw72x9wbryqlhs"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; - predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.0"; sha256="08j9q46a0xq9z5n78zbk35745rv7ni2ymz500b02f04hl2x7wrrm"; depends=[caret forecast Metrics tseries TSPred]; }; + predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.1"; sha256="0f9fapw9yjdzj6pwcskbyfwjsvg09ahn20vrv4bgi0dx8am291rl"; depends=[caret forecast Metrics tseries TSPred]; }; prefeR = derive2 { name="prefeR"; version="0.1.1"; sha256="1wgbwbmghsnc2cargwndda0xhcdswvzd0nkjq5g895kl8zcwgpyf"; depends=[entropy mcmc]; }; - preference = derive2 { name="preference"; version="0.1.2"; sha256="113car6miax832kl0gzlqawwq3f5xbp06fz1ygz9nkzxh7mpmi11"; depends=[]; }; + preference = derive2 { name="preference"; version="0.2.2"; sha256="0rj8mmlzkk8rhxdm1370xp3sayhfmpvq2jrn9rkrk6y3mk28q78r"; depends=[ggplot2 tidyr]; }; prefmod = derive2 { name="prefmod"; version="0.8-34"; sha256="1fkqp75w3im6b0l4sfs1yr2id8ffp2xbpb6lkgnv833cri787d5x"; depends=[colorspace gnm]; }; prepdat = derive2 { name="prepdat"; version="1.0.8"; sha256="19rxyss96cmjhzm69f6l1cd3vkw3wskzhxnbmrz4546x00gf9g5v"; depends=[dplyr psych reshape2]; }; prepplot = derive2 { name="prepplot"; version="0.7"; sha256="1yqiq78iqsk49ky913x4h8f3638blyamrwdhhcmzfgy4n7dnk11x"; depends=[plotrix shape]; }; @@ -9731,7 +9882,7 @@ in with self; { preproviz = derive2 { name="preproviz"; version="0.2.0"; sha256="0jb85qkzywsd2iyfynd8ngkc136m4qc38phc3fgxm2qw30dacmyh"; depends=[caret ClustOfVar DMwR ggdendro ggplot2 gridExtra randomForest reshape2]; }; prereg = derive2 { name="prereg"; version="0.3.0"; sha256="1lnpdwgri5rcwbwz9wh059rl6nrhlp5342gn9rnyp0gqwyni9hpd"; depends=[rmarkdown]; }; presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; - preseqR = derive2 { name="preseqR"; version="3.1.2"; sha256="0xafl51yc0y8rxwz3cc0a6mjv7ajgn8bzpynxgmkb3gjx0jla5kp"; depends=[polynom]; }; + preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.5"; sha256="19jag5cymancxy5lvkj5mkhdbxr37pciqj4vdvmxr82mvw3d75m4"; depends=[]; }; prettyR = derive2 { name="prettyR"; version="2.2"; sha256="026cgbrqs799lg06qlwx1r9ramil790qxrb1cyl4w7mzf8sfpgn9"; depends=[]; }; prettycode = derive2 { name="prettycode"; version="1.0.1"; sha256="0iw38q5yx92m71wrbp52d14bl3nqwpjrd57l2w9chasmlrjnl2aw"; depends=[crayon withr]; }; @@ -9740,17 +9891,17 @@ in with self; { prettyunits = derive2 { name="prettyunits"; version="1.0.2"; sha256="0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"; depends=[assertthat magrittr]; }; prevR = derive2 { name="prevR"; version="3.3"; sha256="11syifnv0mgbybsphgaj3a2j29p2q0l4y4w008n2r9s359arjj8m"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; - pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="0.2.1"; sha256="0yy2ndvmcwb5syb1km0hkv73mwlnnf53mpqp02p98xib1bm4a1w4"; depends=[]; }; + pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="0.3.2"; sha256="0hmqhsbpf8sbk5285mm8g0gi0s7s05dzbdci4fp3xyjn30659gdr"; depends=[]; }; prim = derive2 { name="prim"; version="1.0.16"; sha256="0i5jpk798qbvyv9adgjbzpg4dvf7x51bcgbdp38fzdnam6g88y5a"; depends=[misc3d rgl]; }; - primefactr = derive2 { name="primefactr"; version="0.1.0"; sha256="1p0hlf0llyfccg0pa2fccxp8zzhwsyrpd18d8ih1z7mx88kyrhwm"; depends=[]; }; + primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; }; primer = derive2 { name="primer"; version="1.0"; sha256="0vkq794a9qmz9klgzz7xz35msnmhdaq3f91lcix762wlchz6v7sg"; depends=[deSolve lattice]; }; primerTree = derive2 { name="primerTree"; version="1.0.3"; sha256="0k81h6ln9yjg3r4j8n5f8g8xlrq1pvrr5ywrw16s4mjjhx3r1ylg"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr scales stringr XML]; }; primes = derive2 { name="primes"; version="0.1.0"; sha256="0hhkgpkadvai9xcivfalsvr5w0irsxygyz3p2zngwl3g5rvvh5g9"; depends=[Rcpp]; }; - princurve = derive2 { name="princurve"; version="1.1-12"; sha256="19fprwpfhgv6n6ann978ilwhh58qi443q25z01qzxml4b5jzsd7w"; depends=[]; }; + princurve = derive2 { name="princurve"; version="2.0.3"; sha256="1yc14nychxk2ddhqd2v7cfpx5hgdspxcrg42kvs5jvic54dbjjc2"; depends=[Rcpp]; }; prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; printr = derive2 { name="printr"; version="0.1"; sha256="13yqqcwfqnbhvcxwrr6j45qhnbxng3qwn2ygkr809gibg9grw471"; depends=[knitr]; }; - prioritizr = derive2 { name="prioritizr"; version="3.0.4"; sha256="0c82v0vz7b95milgzbbh5z19h1qmybb44lxxmw5407pqrdv2fihl"; depends=[assertthat BH data_table doParallel magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sp uuid]; }; - prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.1"; sha256="0mskny9j6dwfbndzqpbmqh552vc86xqwjdpjk2h64qza2abyh5vr"; depends=[raster sp]; }; + prioritizr = derive2 { name="prioritizr"; version="4.0.2"; sha256="1v5bkarsgi40w9afalsjfgl7azd1q4lzwr0ipw761cnqcnhkkmkh"; depends=[ape assertthat BH data_table doParallel igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sp tibble uuid]; }; + prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.2"; sha256="1gljrll89r2y6nb4jwcp1pyjs5qrahqawi84kgg74w2q6xq65kga"; depends=[raster sp]; }; prioritylasso = derive2 { name="prioritylasso"; version="0.2.1"; sha256="1wcykrhv1d762h7k7qkvnsjk7l6sincmh6vc6wmgpmmwx5nch70x"; depends=[glmnet survival]; }; prism = derive2 { name="prism"; version="0.0.7"; sha256="03z1m09vf2gd277xp3y5nhvgrp0fnbr2x0r9b92kp46ca09fq9y8"; depends=[ggplot2 httr raster]; }; prisonbrief = derive2 { name="prisonbrief"; version="0.1.0"; sha256="1fnhg6vqdabdnhvgd19vnkfrdgz8a53snfrx6m6mmdwb6cvavb8m"; depends=[data_table dplyr httr magrittr passport rlang rnaturalearth rnaturalearthdata rvest stringr tibble tidyr xml2]; }; @@ -9761,12 +9912,13 @@ in with self; { probout = derive2 { name="probout"; version="1.1.1"; sha256="1hasrvxdig8n3fhzsbmq27050dyanzp1j0qlybnrkb41k9gyljda"; depends=[FNN MASS mclust]; }; probsvm = derive2 { name="probsvm"; version="1.00"; sha256="1k0zysym7ncmjy9h7whwi49qsfkpxfk7chfdjrydl6hn6pscis37"; depends=[kernlab]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; + processanimateR = derive2 { name="processanimateR"; version="0.1.1"; sha256="1him2rdamg4q2kidc7a95pgihhcwfaz678cgdxgzz563dlgqkgac"; depends=[bupaR DiagrammeR DiagrammeRsvg dplyr htmlwidgets magrittr processmapR RColorBrewer rlang scales shiny shinycssloaders tidyr zoo]; }; processcontrol = derive2 { name="processcontrol"; version="0.1.0"; sha256="0c0bksgq24blfkdgp5bn49sjnaajrg5bag8qzb5zffxbhnm4s30x"; depends=[plyr]; }; - processmapR = derive2 { name="processmapR"; version="0.3.0"; sha256="056g379hi80r1hxd77axayb4sa5a97bvxrlsh0nqw6pam5ycqr53"; depends=[bupaR data_table DiagrammeR dplyr edeaR forcats ggplot2 ggthemes glue hms miniUI plotly purrr RColorBrewer rlang scales shiny stringr]; }; + processmapR = derive2 { name="processmapR"; version="0.3.2"; sha256="0j42791qarxrn5ianbndbx0rkq6av4gvrxjl92svzki1mv5cl59n"; depends=[bupaR data_table DiagrammeR dplyr edeaR forcats ggplot2 ggthemes glue hms miniUI plotly purrr RColorBrewer rlang scales shiny stringr viridis]; }; processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; - processx = derive2 { name="processx"; version="2.0.0.1"; sha256="0yw23lp9xjvbpswzghkmjiayw7p19hbvmgv58k3i6b8g5nav4qcg"; depends=[assertthat crayon debugme R6]; }; - prodest = derive2 { name="prodest"; version="0.1.1"; sha256="1j8gqxswwvnd45givadlvblnsc3qli228gz77d7alc19qf1wrrvz"; depends=[DEoptim dplyr Matrix Rsolnp]; }; - prodigenr = derive2 { name="prodigenr"; version="0.3.0"; sha256="1217l9r012xrgzna1bf9z31n2gw36h6grga3949kg7ghxrzjbm4q"; depends=[devtools]; }; + processx = derive2 { name="processx"; version="3.1.0"; sha256="0wjr3cqwvnjxbvln25szffmkns5w0xysivdjr6chxap4nh515b0i"; depends=[assertthat crayon R6 testthat]; }; + prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; }; + prodigenr = derive2 { name="prodigenr"; version="0.4.0"; sha256="1rbfg3jzspw51lbhjbdy0wy5fgl3k3cnb324i73nbgjn7ycmpfqx"; depends=[clipr clisymbols crayon desc devtools fs git2r rmarkdown rprojroot usethis withr]; }; prodlim = derive2 { name="prodlim"; version="2018.04.18"; sha256="1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb"; depends=[KernSmooth lava Rcpp survival]; }; productivity = derive2 { name="productivity"; version="1.1.0"; sha256="1g8b4vlyqq3xyzd4dki01glhc3g9j3ywgwpxylkmzp0ivqic53yc"; depends=[doParallel foreach iterators lpSolveAPI]; }; productplots = derive2 { name="productplots"; version="0.1.1"; sha256="1igs6d0qwgsfk0z3vxabgv5kva9w2kpzi535gjfdrbx34j4pf3gx"; depends=[ggplot2 plyr]; }; @@ -9782,35 +9934,35 @@ in with self; { profvis = derive2 { name="profvis"; version="0.3.5"; sha256="0wkpmjlrfrvrn0pp81n7cbxg8xzi796d0mxfi1v7m41x6z43fm6a"; depends=[htmlwidgets stringr]; }; progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; - progress = derive2 { name="progress"; version="1.1.2"; sha256="1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"; depends=[prettyunits R6]; }; + progress = derive2 { name="progress"; version="1.2.0"; sha256="1rhwm0bdw30z3rvl0bn56xprjl3zrdy7150w4gl4bkvn2d6h9fav"; depends=[crayon hms prettyunits R6]; }; proj4 = derive2 { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; }; - projections = derive2 { name="projections"; version="0.0.1"; sha256="1qrgazxdihzp1i4aghkwkh6q5g1all39bvd83gwh4hj9pxm2w5zy"; depends=[distcrete ggplot2 incidence]; }; + projections = derive2 { name="projections"; version="0.3.0"; sha256="1zhyylbp10g2syfj8mybr5cas68wf4h4fk3s7cca4iiihnglcfwz"; depends=[distcrete ggplot2 incidence]; }; projector = derive2 { name="projector"; version="0.0.2"; sha256="15n5b2xgs0zj87pc3svlmnkjrxgkjkx941g8bs3ms90fg7nh2drc"; depends=[assertthat dbscan plotly RColorBrewer RcppAnnoy Rtsne shiny shinyjs shinythemes]; }; projmanr = derive2 { name="projmanr"; version="0.1.1"; sha256="0mmfmp5qf4r75q4hjbra2pxym77m16g28n94z5yj2qdzq46hgl4c"; depends=[ggplot2 igraph R6 tidyr]; }; projpred = derive2 { name="projpred"; version="0.8.0"; sha256="06wi8lc88xm45drqhb3mcq5l1g1zm2msgi1m0857vldg6828gjbq"; depends=[ggplot2 loo Rcpp RcppArmadillo rngtools rstan rstanarm]; }; promises = derive2 { name="promises"; version="1.0.1"; sha256="0n2mlv6bvfb4yhgcml696l9vkbw21pz0smqylivr606z99rwgny2"; depends=[later magrittr R6 Rcpp rlang]; }; - promote = derive2 { name="promote"; version="1.0.1"; sha256="1f8f5rm25fx4146hf3rds2lb7qpfz17fa5r2a1f4s3q5p86svgqn"; depends=[httr jsonlite stringr]; }; + promote = derive2 { name="promote"; version="1.0.2"; sha256="0nxbwy6ls7bn0dqxa87a2gc74yvpyvsvn03q4v0sy3jmdyca0c73"; depends=[httr jsonlite stringr]; }; prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.2"; sha256="10s52fkq7rv6v4gw1yd46f0fbg89ksim0qhgb5jbglzrqh585ny5"; depends=[rootSolve]; }; propOverlap = derive2 { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; - propagate = derive2 { name="propagate"; version="1.0-5"; sha256="168ya3a74fjqwl9bzsb3ywzypb90h8snymgvxryrx7plrfcmwlav"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; + propagate = derive2 { name="propagate"; version="1.0-6"; sha256="17jinz1jramlsf87i7vyn2qp82rc1dacljfaxxplrk3crhw3bhs7"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; }; - prophet = derive2 { name="prophet"; version="0.2.1"; sha256="10qd3w9jgk3d53465005b0di2lxa6cg67lj81fzmf2h919ai9i5m"; depends=[dplyr extraDistr ggplot2 Rcpp rstan scales tidyr]; }; + prophet = derive2 { name="prophet"; version="0.3.0.1"; sha256="0ays7qn8vsa8kwzh5fk0b7nbd0l72yczjbg9h0ajkyywz3jda3fv"; depends=[dplyr dygraphs extraDistr ggplot2 Rcpp rstan scales tidyr xts]; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; - propr = derive2 { name="propr"; version="3.1.9"; sha256="0bwkn923id6wd9c4qas6j363i9v4ziwvcr8d0rijxyvg23vjaq6x"; depends=[fastcluster ggplot2 igraph Rcpp]; }; + propr = derive2 { name="propr"; version="3.5.1"; sha256="0wja6snr1hd1ms3wzg6scvs30zip5kbq0jx2j31dxrmy6fwd4h2j"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; }; - protViz = derive2 { name="protViz"; version="0.2.45"; sha256="0mvq0p0lnxwpia1znyizha5gdj6f9i07nghp3gv9kfficlq3fw03"; depends=[Rcpp]; }; + protViz = derive2 { name="protViz"; version="0.3.1"; sha256="1im3ajimycsc1zpzbihxlsibjk0462q0vldy7v5ypsqnjbi1ndxm"; depends=[Rcpp]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; proteomics = derive2 { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; }; protiq = derive2 { name="protiq"; version="1.2"; sha256="1d5wr9w540a79i57nr0arn5xg7s6jhhy5nrgsk8r3ljidld2s2sa"; depends=[graph mvtnorm RBGL]; }; proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; protoclust = derive2 { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; }; - protolite = derive2 { name="protolite"; version="1.7"; sha256="002vncki8r33z9k208h19q90jwjy3d58fk3xzkh6cbsv4hgay9g0"; depends=[jsonlite Rcpp]; }; + protolite = derive2 { name="protolite"; version="1.8"; sha256="05w5lgf255agj70qdyjm64ci9j0pncz0k0bxhq2cxjbkv09169lr"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.1"; sha256="0v65abrn73wgwnrrf6gv9f7p0qy12xlk9ishq9lq4qal1wlsrrjs"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; protr = derive2 { name="protr"; version="1.5-0"; sha256="1mi14hph6cqdsgjw4p00miaa4bh2axkwfcmxaiv7f7v4dk8i52y1"; depends=[]; }; proustr = derive2 { name="proustr"; version="0.2.1"; sha256="17syaxfrwm9kh5q825hj7bsrvi4h9avpdabw9y0vq20y87w8cq1s"; depends=[assertthat dplyr magrittr purrr rlang SnowballC stringr tidyr tokenizers]; }; - provenance = derive2 { name="provenance"; version="1.9"; sha256="1d40k85cxnnxy480ylvy6wwswgf8hbxgcbansx90hyg9cb3rvhil"; depends=[MASS]; }; + provenance = derive2 { name="provenance"; version="2.0"; sha256="1775dxxk506nwaigyjsvprf4fibmiamwp7p7cl01g3mbr4gyrm0z"; depends=[IsoplotR MASS]; }; proxy = derive2 { name="proxy"; version="0.4-22"; sha256="0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma"; depends=[]; }; prozor = derive2 { name="prozor"; version="0.2.3"; sha256="1686lfmzmzl1488xnppv95hfr83gf67xfzqsw49gdas0aba3plhh"; depends=[AhoCorasickTrie doParallel foreach Matrix plyr seqinr stringr]; }; prrd = derive2 { name="prrd"; version="0.0.2"; sha256="0ifs55yqvwbcs3xyc90yi763fgavdhajk1ba73g1kchn2ak39qhb"; depends=[config crayon data_table DBI liteq RSQLite]; }; @@ -9823,9 +9975,10 @@ in with self; { psda = derive2 { name="psda"; version="1.0.0"; sha256="0zsvm6rqcxv186xbi8nqd4ak93lhrm1hp7339cks140vdp8yl7ys"; depends=[ggplot2 plyr raster rgeos sp]; }; pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; + pseudorank = derive2 { name="pseudorank"; version="0.2.0"; sha256="17zr5q76l0y57n7am3c6zg3cwrhcvv2l8q561jcasacp16yg4gy3"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.0"; sha256="1iv3fa7ar9i7v9j5axbasmn8l8nvry4zvmb7fd8aql82f22szmbj"; depends=[survival]; }; - psgp = derive2 { name="psgp"; version="0.3-17"; sha256="11rx3xim9jx8klpz1p2xj1laimd5q5qs9mvigbh48gsjrm0pnd5v"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; }; - psidR = derive2 { name="psidR"; version="1.4"; sha256="1whdjsab5cihlq4gp06xafl3zg7z0cjb4622d23v24igz7kr0ic2"; depends=[data_table foreign RCurl SAScii]; }; + psgp = derive2 { name="psgp"; version="0.3-18"; sha256="1jfkqwqnmzj3m1d9gxbp2rjkbqb0di75gh78zg861by5qhhaz1a7"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; }; + psidR = derive2 { name="psidR"; version="1.5"; sha256="02cyy1dqgg6mcqyvb0py674lyhhk3h0zi9p02yqacbr81swsjpam"; depends=[data_table foreign httr openxlsx RCurl SAScii XML]; }; pso = derive2 { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; @@ -9833,33 +9986,32 @@ in with self; { pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; - psych = derive2 { name="psych"; version="1.8.3.3"; sha256="1zhp8j81nkzd65168zdw9ylypb9n07ajan21x0wqcn8jdbg970sg"; depends=[foreign lattice mnormt nlme]; }; - psychmeta = derive2 { name="psychmeta"; version="1.0.0"; sha256="0wbjq8908wnch45n4mblx1lxsp5r65jv2g9d46lar6qxrawqbaqg"; depends=[boot dplyr fungible ggplot2 knitr MASS metafor nor1mix progress RCurl RefManageR reshape2 rlang rmarkdown rtf stringr tibble tidyr tmvtnorm]; }; - psycho = derive2 { name="psycho"; version="0.1.4"; sha256="0drzr3svs76wx7ki6s4c5i27r5p309wgzdcpxz1j5i4ivvwhkl0b"; depends=[dplyr ggcorrplot ggplot2 lmerTest MASS MuMIn nFactors ppcor psych purrr qgraph rstanarm stringr tidyr]; }; + psych = derive2 { name="psych"; version="1.8.4"; sha256="1kzv9nc7rwn1sj1zxd8xrbs6c7qlka7j2c8lsr4f20znkd3qx8gf"; depends=[foreign lattice mnormt nlme]; }; + psychmeta = derive2 { name="psychmeta"; version="2.1.1"; sha256="0sjsmzncbzqrhcmv221jliqvfhdd70ysrxax9dprsl8kyyvifvrl"; depends=[boot cli crayon data_table dplyr fungible ggplot2 knitr MASS metafor nor1mix progress purrr RCurl RefManageR reshape2 rlang rmarkdown stringi stringr tibble tidyr tmvtnorm xml2]; }; + psycho = derive2 { name="psycho"; version="0.2.8"; sha256="0739y1svarfw6v4jrf3q6n0vnb6wfij9dnmvzvn87wg8rsp0bvrl"; depends=[BayesFactor broom coda DescTools dplyr emmeans ggcorrplot ggplot2 lavaan lmerTest loo MASS MuMIn nFactors pbkrtest ppcor psych purrr qgraph rstanarm rstantools scales stringr tibble tidyr]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-4"; sha256="15yk3z11w4bzk6vljr13bkfhzycypww6blc1djb5iwl635xq1c49"; depends=[flexmix Formula lattice modeltools psychotools]; }; - psychotools = derive2 { name="psychotools"; version="0.4-2"; sha256="04p5yb39c8j28q6brqsrw0dr1zvgpyzb7008v2kk3d5sncgl4dd0"; depends=[]; }; + psychotools = derive2 { name="psychotools"; version="0.4-3"; sha256="023cfh9ks8cdk458g4yvjhdy8g9vkcabgpj24bcs46r8nga3adjv"; depends=[]; }; psychotree = derive2 { name="psychotree"; version="0.15-1"; sha256="1awavyzblh4s0v15kv52sq5dpalg5p0fp7ih46jxppm1srdxsz41"; depends=[Formula partykit psychotools]; }; + psyosphere = derive2 { name="psyosphere"; version="0.1.4"; sha256="0z3qnbybpf5zk07zny2mq8ax8lr0m4n7gwp899km0lixb10z4ysf"; depends=[geosphere ggmap ggplot2 lubridate plyr rgdal RgoogleMaps SDMTools sp]; }; psyphy = derive2 { name="psyphy"; version="0.1-9"; sha256="1ndc6sy662wj2qfx7r97crlqjd8fdkfvfy59qmf34bcbzbg33riz"; depends=[]; }; - psytabs = derive2 { name="psytabs"; version="1.0"; sha256="0dgp5h0jxmqbkkjvd39w1ds9hcggd27fc7pfarwa3iivphf35dim"; depends=[lavaan mokken plyr psych R2HTML rtf]; }; ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.4"; sha256="1jbj8z7lqg7w1mqdh230qjaydx2yb6ffgkc39k7dx8xl30g00i5b"; depends=[misc3d]; }; ptstem = derive2 { name="ptstem"; version="0.0.3"; sha256="0dasfqkrd5dkqr1wbg56qrpkyjcb0lcdfcgz5mbxbhs478gf0nwj"; depends=[dplyr hunspell magrittr rslp SnowballC stringr tidyr tokenizers]; }; - ptw = derive2 { name="ptw"; version="1.9-12"; sha256="111b0s66p7fk6z6bnm3wckpfjxr1gshv0rqqy5wy6qg60hp7bcfd"; depends=[nloptr]; }; + ptw = derive2 { name="ptw"; version="1.9-13"; sha256="0iighsx6xn8nbw4qpzmwgi4czmr5m8yrr7fzm7mx7cvx2r5ffmbq"; depends=[nloptr]; }; ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; - pubh = derive2 { name="pubh"; version="0.1.7"; sha256="0dha3adlbrxgkamlb5i2lcnqcsspqb30fmj0f2zhz0bh4i83lznb"; depends=[bookdown car descr Epi epiR epitools gee lattice latticeExtra lme4 lmtest MASS multcomp nlme nnet ordinal pander papeR rmdformats sandwich survival visreg]; }; + pubh = derive2 { name="pubh"; version="0.2.2"; sha256="13byp5xha102h9y8dhka4fz9gdan4gshcy6bvkgvkj106h7zhy4q"; depends=[bookdown car descr effects Epi epiR epitools gee lattice latticeExtra lme4 lmtest MASS multcomp nlme nnet ordinal pander papeR rmdformats sandwich survival]; }; pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.12"; sha256="04zb5lbjdrhdpam4xmkcc947icsnias5pxbv2pwhvyhk7mz16nya"; depends=[boot R2HTML RCurl XML]; }; pullword = derive2 { name="pullword"; version="0.2"; sha256="14rln0nbd4k2cvf18iwvc56776b9g3m3cs67i7fgzabfrgj8y6db"; depends=[RCurl]; }; - pulsar = derive2 { name="pulsar"; version="0.3.2"; sha256="1zfkxksynrphfv6lpr7rc3g9k643840bgrdv9ic700984vxgg68m"; depends=[Matrix]; }; - pulver = derive2 { name="pulver"; version="0.1.1"; sha256="0zj3a66hjing4a87lvhxlvdp72kpn0s2d6r5kc0pi06ls04r8sax"; depends=[DatABEL Rcpp]; }; + pulsar = derive2 { name="pulsar"; version="0.3.3"; sha256="1lhc9cvxkxvjcl2hi2kivwqp4gddq32kysy1rhpi34i9w0y3gav6"; depends=[Matrix]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; + puniform = derive2 { name="puniform"; version="0.1.0"; sha256="16s5qk17wnag7fqgslxpayaq6nczaj2izgdkrkcssgjxfwnanzgm"; depends=[ADGofTest metafor Rcpp]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; - purrr = derive2 { name="purrr"; version="0.2.4"; sha256="0wgbnbrqncjpggg8f9bdpcd1gy351s5f0az5k8lc55cvs9lhz3gd"; depends=[magrittr rlang tibble]; }; - purrrlyr = derive2 { name="purrrlyr"; version="0.0.2"; sha256="1wkngb87xmlkghsqjr7l5fhlj3a54prvg6v6hd0prn768xw4rc1c"; depends=[BH dplyr lazyeval magrittr purrr Rcpp]; }; + purrr = derive2 { name="purrr"; version="0.2.5"; sha256="0dc53zzan3km2l9lzxjixcv6yn7dhw2ppmz8qf2awhak7x2qm9m4"; depends=[magrittr rlang tibble]; }; + purrrlyr = derive2 { name="purrrlyr"; version="0.0.3"; sha256="0cx3vzrkd8dv6cgpdhjn119fyn2kvixvkabvf2h5l6ab61x54wpx"; depends=[BH dplyr magrittr purrr Rcpp]; }; pushoverr = derive2 { name="pushoverr"; version="1.0.0"; sha256="1zazrx0szx21ymn7zlkfqkhid0ar8jblnpnf5nycj0p7dbh6d0bd"; depends=[assertthat httr]; }; - pvar = derive2 { name="pvar"; version="2.2.2"; sha256="0a84nap9rwlfvhi4yj6mh7wrmzsi06w1zpmshw84lkm2h2ch02gy"; depends=[Rcpp]; }; pvclass = derive2 { name="pvclass"; version="1.4"; sha256="1g6x75qz3xybq1xnik0hzi7mcs0gzzqd3f0iwfkzi5d1zcddnw13"; depends=[Matrix]; }; pvclust = derive2 { name="pvclust"; version="2.0-0"; sha256="0hfpf257k5f1w59m0zq6sk0gaamflc3ldkw6qzbpyc4j94hiaihs"; depends=[]; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; @@ -9873,7 +10025,7 @@ in with self; { pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; pwt9 = derive2 { name="pwt9"; version="9.0-0"; sha256="1y8zildqnagrp8vf6d8ips0896yp0qcvwy600yv1bqdnglvmn62b"; depends=[]; }; pxR = derive2 { name="pxR"; version="0.42.2"; sha256="1q1xwsrs1ch1a1d1clz6sl7vnsyz5wjqivczk5n5d772y4w60bz5"; depends=[plyr reshape2 RJSONIO stringr]; }; - pxweb = derive2 { name="pxweb"; version="0.6.3"; sha256="106nb0a3v295cam8ixhdwpgjhwq8p71c2z5c49s6xnqwmf6rbd0h"; depends=[data_table httr plyr RJSONIO stringr]; }; + pxweb = derive2 { name="pxweb"; version="0.6.37"; sha256="1ia38iqs4iiq3zsdwk13zxfvc2i3h3jgmz790pr24iimsvhazff0"; depends=[data_table httr plyr RJSONIO stringr]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyinit = derive2 { name="pyinit"; version="1.0.2"; sha256="148b8l5a8c636rgm8dwd8v6ggw9qmkafc5a40bciqc4rk09lfhl3"; depends=[robustbase]; }; pyramid = derive2 { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; }; @@ -9889,14 +10041,14 @@ in with self; { qcc = derive2 { name="qcc"; version="2.7"; sha256="0lc26w7p3d023lfr8v6v75m2vwqg9vi9pdipap19l4vbdq29l4zz"; depends=[MASS]; }; qclust = derive2 { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; }; qcr = derive2 { name="qcr"; version="1.0"; sha256="1251naica44kccmikyzdi3ncxfmvyqbc4qspfqnc0w54cqpsy5rw"; depends=[fda_usc MASS mvtnorm qcc qualityTools]; }; - qdap = derive2 { name="qdap"; version="2.2.9"; sha256="19jlh6k3vw6c20xfygn20dgs86h2a16imn23afgxlfggbazwxjyd"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; + qdap = derive2 { name="qdap"; version="2.3.0"; sha256="11m2si5zn0sls7hhfdcny3cmhirfxr4m49krqww2msj636yr2f64"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; qdapDictionaries = derive2 { name="qdapDictionaries"; version="1.0.7"; sha256="0jdx7bxmvc4p41jb4fhaagg5jsbsi7gva870cmyia72li52grhyn"; depends=[]; }; qdapRegex = derive2 { name="qdapRegex"; version="0.7.2"; sha256="1xa8q1way3gjadrjh3mv3xr4c6b4h16nd2c6lgl969difplpfz9p"; depends=[stringi]; }; qdapTools = derive2 { name="qdapTools"; version="1.3.3"; sha256="0a28jn57d2fas3009cm10z07fq77ql3ffcrhcxsiimb57179wj0n"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.0"; sha256="067wnwwz8s0yxig13wrjq37w62kf8p5pa8my5lfpc1ik1b7iysby"; depends=[Rsolnp]; }; - qgam = derive2 { name="qgam"; version="1.1.1"; sha256="15f2c0n4j8q1vgd3hi2q7lmf78a3zxi5a01p0lq0916jms08lk27"; depends=[doParallel mgcv plyr shiny]; }; - qgraph = derive2 { name="qgraph"; version="1.4.4"; sha256="0hgqjf5ljyrni0ifkq9x0ninyqwsaqd9z9i4d4phrww586590apn"; depends=[BDgraph colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; + qgam = derive2 { name="qgam"; version="1.2.2"; sha256="0761rkkfaxi3scfdici9a8sz6sbs5d6p9wnffdlmyn5jmqj9g24q"; depends=[doParallel mgcv plyr shiny]; }; + qgraph = derive2 { name="qgraph"; version="1.5"; sha256="1m078lij70ik6r9nxznbi18bavdsx5ai06417j3bsdipy39xrb85"; depends=[abind BDgraph colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix pbapply plyr png psych reshape2 sem sna]; }; qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; qicharts = derive2 { name="qicharts"; version="0.5.5"; sha256="0bl1f64b5n8q9jhzh3rqfyh9613qiy9mhcy2xsn16jyrj4hmj0jd"; depends=[ggplot2 lattice latticeExtra scales]; }; @@ -9904,13 +10056,13 @@ in with self; { qiimer = derive2 { name="qiimer"; version="0.9.4"; sha256="0argspi9pin2gjsg0qkl28hj3bw8svfab1cy410zlq76qdnmg7df"; depends=[pheatmap]; }; qiitr = derive2 { name="qiitr"; version="0.1.0"; sha256="1p0mcwgzvbib20l05wrnshkqx99vwr69dgy15dfwp75skyy5l797"; depends=[httr jsonlite purrr rstudioapi]; }; qlcData = derive2 { name="qlcData"; version="0.2.1"; sha256="0n1r7462zmyzkyi7mp3hf7pn7bgw1m1zs9flm3n199kjm8f6yyzy"; depends=[ape data_tree docopt phytools shiny stringi yaml]; }; - qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.5"; sha256="0fm49iydbjp264h9mkk8qfblbvg4l3bfcnphxyhcv3n27m0w44sf"; depends=[Matrix slam]; }; + qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; }; qlcVisualize = derive2 { name="qlcVisualize"; version="0.1.0"; sha256="13rc4z7rz7vngrkxq09flhszvcbg6i7drdkdp8kmvgcxf0im6lv0"; depends=[alphahull fields mapdata mapplots maps maptools MASS qlcMatrix raster seriation sp spatstat]; }; qle = derive2 { name="qle"; version="0.17-1"; sha256="1zsvmnxdfd6avr14z5101i4kmks87yrsn15wiq5sx8gsfbxksjkj"; depends=[digest expm lhs mvtnorm nloptr]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; - qmethod = derive2 { name="qmethod"; version="1.5.2"; sha256="1snllw82cijl7qgmgkn2x1k3x43x0hxbvh5mx5sffrma9kkv2fii"; depends=[digest GPArotation knitr psych xtable]; }; + qmethod = derive2 { name="qmethod"; version="1.5.4"; sha256="1c64b7jy9llz5dhfnk75yamjva043213gd08dsr27pyjkmbyqms1"; depends=[digest GPArotation knitr psych xtable]; }; qmrparser = derive2 { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; }; - qpcR = derive2 { name="qpcR"; version="1.4-0"; sha256="029qhncfiicb3picay5yd42g6qi0x981r6mgd67vdx71cac9fp59"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; + qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.4"; sha256="1v9s9ag1hfb47py87wb2nad4mbsfx35832hdmrh5kxrb2f11zl1s"; depends=[calibrate]; }; qqplotr = derive2 { name="qqplotr"; version="0.0.2"; sha256="1cfzs77labxsfqq3flqz40gihyaz4bsi9vhsx6qqgpl6v4iz0a2h"; depends=[dplyr ggplot2 knitr MASS robustbase]; }; qqtest = derive2 { name="qqtest"; version="1.1.1"; sha256="08vfpbrgvyhv1w0gqmys9zkhfxh85sk74ig5fn12ma2p87zv7r5l"; depends=[robust]; }; @@ -9919,19 +10071,19 @@ in with self; { qrNLMM = derive2 { name="qrNLMM"; version="1.4"; sha256="0h1jra247flipv4pwww8rn61pj8jxpiaw74f2czs950klnznp1xm"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; qrcm = derive2 { name="qrcm"; version="2.1"; sha256="0wp6ynckh66gxi569wbvn5szwih4g0c21zrrpz3zfavhqwk7srgf"; depends=[pch survival]; }; - qrcmNP = derive2 { name="qrcmNP"; version="0.1.0"; sha256="0fhbycxzmz3bpr6y2i4aphqfclfriifrc8w10p8z10l8sabifrsx"; depends=[qrcm survival]; }; + qrcmNP = derive2 { name="qrcmNP"; version="0.1.2"; sha256="0psgnz2fdj530wjj14pv5x2889yzphnlsg10lry9i6dvmxd8m47k"; depends=[qrcm survival]; }; qrcode = derive2 { name="qrcode"; version="0.1.1"; sha256="12j0db8vidlgkp0dcjyrw5mhhvazl7v7gpn9wsf2m0qnz1rm4igq"; depends=[R_utils stringr]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; - qrfactor = derive2 { name="qrfactor"; version="1.4"; sha256="0f02lh8zrc36slwqy11x03yzfdy94p1lk5jar9h5cwa1dvi5k8gm"; depends=[cluster maptools mgraph mvoutlier pvclust]; }; qrjoint = derive2 { name="qrjoint"; version="1.0-0"; sha256="18jmxb5wv16gy4vf0cgp4x885s53i3z3qmc46bdr4md513mc980w"; depends=[coda kernlab Matrix quantreg]; }; qrmdata = derive2 { name="qrmdata"; version="2016-01-03-1"; sha256="192dcsmvl3xbzlk658cfp2sk5fkgbjhjd4g1mrcs8s63hmzbwdzc"; depends=[xts]; }; qrmix = derive2 { name="qrmix"; version="0.9.0"; sha256="1r695d9bmmngvblh9jj0rnjymdaln9w0jywz51wla0bdssssf845"; depends=[MASS quantreg]; }; - qrmtools = derive2 { name="qrmtools"; version="0.0-8"; sha256="111rhfaj2hwh2267y3y20wh9dxp0fj2m68j0hv4rmdslm2xwfjzq"; depends=[lattice Quandl quantmod rugarch xts zoo]; }; - qrng = derive2 { name="qrng"; version="0.0-3"; sha256="0xdhmcqvgjmrf4c72x76yz5kp0jiysy8q6f67lix1h4mvzr4q2qd"; depends=[]; }; - qrnn = derive2 { name="qrnn"; version="2.0.2"; sha256="0w4gzignkfrx220fk9j4by0ibr4r9s66il0f43k6abf0czvqdxx4"; depends=[]; }; + qrmtools = derive2 { name="qrmtools"; version="0.0-9"; sha256="0q6hp6j4hcj17i1c1rf180rvjcjmka0zq4r89x2rb5cwrhgps99a"; depends=[lattice Quandl quantmod rugarch xts zoo]; }; + qrng = derive2 { name="qrng"; version="0.0-5"; sha256="0ddwbbw5w7y8vns83z4dyh8inl976k2cg55rxbynaks8bdxr38mj"; depends=[]; }; + qrnn = derive2 { name="qrnn"; version="2.0.3"; sha256="0lc1gj674ll168dbcb1wh0zxmvjaqfhfxg7p2zfpakq63qns442g"; depends=[]; }; qrsvm = derive2 { name="qrsvm"; version="0.2.1"; sha256="0qpj3c8qwrwr2asvp921av0mbdba1ayz0pdq4a52i1waqng4fgis"; depends=[doParallel foreach kernlab Matrix quadprog]; }; - qtbase = derive2 { name="qtbase"; version="1.0.13"; sha256="0bi3lxhnfj4pzhc11yd580zmfn9wnkbvag5rlm2g7c9i2dsi0inj"; depends=[]; }; - qte = derive2 { name="qte"; version="1.2.1"; sha256="1skl7a4dqxfj8p2d1wpan4j7bmr1l5aqyxlzl9qmbx0brf9r5gk4"; depends=[BMisc formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; + qsort = derive2 { name="qsort"; version="0.2.1"; sha256="046imyjdbsakhf6i6p63xafb9dx7fcixbdqnkm34wrzzvyjvxh15"; depends=[cowplot ggplot2 gridExtra purrr]; }; + qtbase = derive2 { name="qtbase"; version="1.0.14"; sha256="1pcgjycq61x9h52sqr6fz83qjnlpbawvpavnn9hyw2b7jlv3nwfd"; depends=[]; }; + qte = derive2 { name="qte"; version="1.2.2"; sha256="0h4kffavw2ii765c4bvwg19nlzk1si8sw09iklwmmb6gdm2v5m81"; depends=[BMisc formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; qtl = derive2 { name="qtl"; version="1.42-8"; sha256="1l528dwvfpdlr05imrrm4rq32axp6hld9nqm6mm43kn5n7z2f5k6"; depends=[]; }; qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; qtlbook = derive2 { name="qtlbook"; version="0.18-6"; sha256="0kbz7icp6fzl2bgk50fcg8x704aijpz3xbqrzraj7qa3z8gakaj6"; depends=[qtl]; }; @@ -9944,48 +10096,47 @@ in with self; { quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; quadmesh = derive2 { name="quadmesh"; version="0.1.0"; sha256="1k1midhszmi843krv9sdwbyhjmffgps0xx9aigkp7yw7mpif07vx"; depends=[dplyr raster]; }; quadprog = derive2 { name="quadprog"; version="1.5-5"; sha256="0jg3r6abmhp8r9vkbhpx9ldjfw6vyl1m4c5vwlyjhk1mi03656fr"; depends=[]; }; - quadprogXT = derive2 { name="quadprogXT"; version="0.0.2"; sha256="1yqcxpzahrmlyz1rsp3fgs1dsjf7y7lhp98ybpmlgpj6c9z2abcl"; depends=[quadprog]; }; - quadrupen = derive2 { name="quadrupen"; version="0.2-5"; sha256="193hn3yf6c5i3p4n8gpg78nvsf2jdlcw40mm4p2ffxk7xzmv8xvl"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; + quadprogXT = derive2 { name="quadprogXT"; version="0.0.3"; sha256="1pa494xpmxanbqcpylhhhm4bnsd1vkrixnmi2rg2bdw21x77hlmb"; depends=[quadprog]; }; + quadrupen = derive2 { name="quadrupen"; version="0.2-6"; sha256="0din0b4iaixjfkdiy4gbl83hq6z7v7aca2xk65hzfsalp6llk91x"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-3"; sha256="1yyqk223ydcc0125gsn33a4mcdp8bd76fpn8kj9bfz9g78b8dqmx"; depends=[KernSmooth]; }; qualityTools = derive2 { name="qualityTools"; version="1.55"; sha256="1c2p78dhwqvzb2k01dvwb41a6hlr2iwpw6fv91036x30rphjzb88"; depends=[MASS Rsolnp]; }; qualpalr = derive2 { name="qualpalr"; version="0.4.2"; sha256="0lgg8r7w2fwd2nw8x3k876pyc9r3igqri57akc5fwi92gb8grj5b"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; qualtRics = derive2 { name="qualtRics"; version="3.0"; sha256="1cd49jvk04gx278v74yc93f4jni7k30v0anz95mz98x4y3xr45nd"; depends=[assertthat dplyr httr jsonlite readr rlang sjlabelled stringr yaml]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; - quantable = derive2 { name="quantable"; version="0.2.2"; sha256="179bqqrga8mpigchfmhf11sc75frhd9nd6yqclz85lnd6gl16yd7"; depends=[caret e1071 gplots Matrix pROC RColorBrewer scales]; }; - quantchem = derive2 { name="quantchem"; version="0.13"; sha256="1ga5xa7lsk04flfp1syjzpnvj3i2ypzh1m49vq1xkdwpm6axdy8n"; depends=[MASS outliers]; }; - quanteda = derive2 { name="quanteda"; version="1.2.0"; sha256="19rr0dkcazdkyzyy7srawf57mmvjjz3nvxik0bkqx6cl7cvrjajz"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi XML yaml]; }; + quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; }; + quanteda = derive2 { name="quanteda"; version="1.3.0"; sha256="140xs8581l29p4zn26d9ijzpzcqpgf91l279vbagbpbsj3z8zqky"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi xml2 yaml]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantmod = derive2 { name="quantmod"; version="0.4-13"; sha256="16aldg96z7amp5mr90nb8127yy04gxsihfr26km5p3cx3j117yv0"; depends=[curl TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; - quantreg = derive2 { name="quantreg"; version="5.35"; sha256="18f3qxv1j1bqmq55hzssz8mnp5ww4flhy80rm2v1rk0mmg9paz7m"; depends=[Matrix MatrixModels SparseM]; }; + quantreg = derive2 { name="quantreg"; version="5.36"; sha256="023gdzahxp582rpabilpxbl3wyjrgjjnnrhcv9xhrqdfiq5l2yza"; depends=[Matrix MatrixModels SparseM]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; - quantregGrowth = derive2 { name="quantregGrowth"; version="0.4-0"; sha256="0lscz07k14z1mgxdgi7j0nd5098x6p4hsm9qzw8fgnsz4xgm5qxn"; depends=[quantreg]; }; + quantregGrowth = derive2 { name="quantregGrowth"; version="0.4-2"; sha256="0g8jlgxivsg788g73ji7vckc6hgncsjkpyc0l8awcpaxi7i3a98l"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-1"; sha256="0kvwifdwy3big0lls5h3wcb48v3jvlfp1l0zjd07jnvj43zj3ysd"; depends=[abind quantreg Rcpp snowfall zoo]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; questionr = derive2 { name="questionr"; version="0.6.2"; sha256="0mjgwm6xm753r6bjlz79c9vp7xxkb69hiv3mlzrm50slh34x7jhx"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny]; }; queuecomputer = derive2 { name="queuecomputer"; version="0.8.2"; sha256="0zpyi4hqhsy2jlbf2ygfl25wh3m166ifp9yw4h4ycd1pga9bj43n"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.11"; sha256="1rgavpivvxwww1qiphbjm25d1avhjcjv31imsrzrkwh1d12b2k7x"; depends=[]; }; - quhomology = derive2 { name="quhomology"; version="1.1.0"; sha256="0acglmjp4x8f81iysxp8x7v5279p8gdidj308b9spn6xbmqgbr8z"; depends=[MASS numbers]; }; - quickPlot = derive2 { name="quickPlot"; version="0.1.3"; sha256="091d81x5kbjs4hawrdlvkp6ylmcsjg4xqs47hk2nrv5im2nl8i7z"; depends=[data_table ggplot2 gridBase igraph raster RColorBrewer rgdal sp]; }; + quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; }; + quickPlot = derive2 { name="quickPlot"; version="0.1.4"; sha256="13g86gdfidkvp70w4gscp81c4vzbhbl7b47a7knw4h7hswsb9a1p"; depends=[data_table fpCompare ggplot2 gridBase igraph raster RColorBrewer rgdal rgeos sp]; }; quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; }; quickblock = derive2 { name="quickblock"; version="0.1.0"; sha256="15zv7znhq3rl5jkdy0jyxr0h2mkpxir04vvl2hw57c5mn79izcpr"; depends=[distances scclust]; }; - quickmapr = derive2 { name="quickmapr"; version="0.2.0"; sha256="1hxcq4h1rgdmypn3kgmwppzhacyspcj7iv2sy7s2xx5y69x62hf1"; depends=[httr raster rgdal rgeos sp]; }; + quickmapr = derive2 { name="quickmapr"; version="0.3.0"; sha256="0962qm8ak0wpqld8nrb8rvvb78743zfrfsq2xrwdlql681j2nv8c"; depends=[httr raster rgdal rgeos sf sp]; }; quickmatch = derive2 { name="quickmatch"; version="0.1.2"; sha256="03wnx6hifr4pmwm6fsxamcaf5ig59nfia9lyn6mzxplinfid71w6"; depends=[distances sandwich scclust]; }; - quickpsy = derive2 { name="quickpsy"; version="0.1.4"; sha256="0zvi5g43dj1a3f6nysw9gc9nnhm0z5h6sfka4ggwr14fw6k0gz3l"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; + quickpsy = derive2 { name="quickpsy"; version="0.1.5"; sha256="0r1xjcx02p0fsgfcd2h0dxcagzxxan405cjwh8sjdgi5p01jrym8"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; }; quint = derive2 { name="quint"; version="1.2.1"; sha256="1d9dnrjnl9cg2yn5snr6x9qr6lf74639j3ymsxpw0wn5c4fm8z46"; depends=[Formula partykit rpart]; }; - quipu = derive2 { name="quipu"; version="1.9.0"; sha256="1py1qpbwp2smr5di8b3zmzxxhchfmr5qfhqkdiqig28mcnqcmp5n"; depends=[agricolae pixmap shiny stringr xtable]; }; quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.2"; sha256="034fhfmfq62yf7akx2i0bim70jq9azkk2h28k79lwax7ysydsjnj"; depends=[]; }; - qut = derive2 { name="qut"; version="2.0"; sha256="1r0yg99p88ar1d9qhayzpplssjpsy901b7n6yr7r4n9nldh8p7xz"; depends=[flare glmnet lars Matrix]; }; + qut = derive2 { name="qut"; version="2.1"; sha256="1wkk4c4f10a1whrspr5yalp7flcxckzxlx187ymmpnz7qcncz619"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="0.9-1"; sha256="1ll71yww8rsbp0qa60w7vdna8yk60cq66cjn5cdk3bkdwyni28yy"; depends=[]; }; qwraps2 = derive2 { name="qwraps2"; version="0.3.0"; sha256="0xhlb0c955raxrqw202f7jd9c1wkrigh1qs93m2739jkwkyv2n3b"; depends=[devtools dplyr ggplot2 knitr magrittr Rcpp RcppArmadillo rlang tidyr]; }; r_jive = derive2 { name="r.jive"; version="2.1"; sha256="0l0bhhp6bdc84pzxi7gnsxx3scycw0zahrnc496wx3j43np9hlsg"; depends=[abind gplots SpatioTemporal]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; + r2d3 = derive2 { name="r2d3"; version="0.2.2"; sha256="1r70x14s6vb4hyig5avb0vd6ynj2y6g2n7vd50hzm1yhb6w2z81b"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2stl = derive2 { name="r2stl"; version="1.0.0"; sha256="18lvnxr40cm450s8qh09c3cnkl1hg83jhmv1gzsv6nkjrq4mj5wh"; depends=[]; }; @@ -9993,13 +10144,13 @@ in with self; { r6extended = derive2 { name="r6extended"; version="0.1.1"; sha256="184c3jh84vihbwg81c2wv3ndaddki8cpas3wgvqk2akyq168rnfc"; depends=[digest hellno magrittr R6]; }; rARPACK = derive2 { name="rARPACK"; version="0.11-0"; sha256="12h2y46xcfldhjdmm960swgn9b23zvkj5vg2bi42s9qxwgi02d63"; depends=[RSpectra]; }; rAltmetric = derive2 { name="rAltmetric"; version="0.7.0"; sha256="1vbvjv273vg3pi30vxxa2bivlajfsbqrzflk3payp6ym9myi27mg"; depends=[httr jsonlite rlist]; }; - rAmCharts = derive2 { name="rAmCharts"; version="2.1.6"; sha256="00bc05jjyaky71pdic455cs6anqf0gm7563vwwxxzqnrm8lknrag"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml zoo]; }; + rAmCharts = derive2 { name="rAmCharts"; version="2.1.8"; sha256="02j4wbgh3hfkv3zhrpjyjj61w76qmm4v0642crlzdab959n5qsfy"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml zoo]; }; rAverage = derive2 { name="rAverage"; version="0.5-8"; sha256="09yap3qv02k5nidi6a4png9xa5yy7cb8hg8s2dq99wnc88s42d26"; depends=[]; }; rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.1.0"; sha256="194j445nirvvkz880ax0zw2q1mkiy0khdfjl7bwiwj8knhhvkrhw"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; rCAT = derive2 { name="rCAT"; version="0.1.5"; sha256="03nbhcfgawz0a8h5fr51aqn1n9v7kprwvafxzjb2pb8751rica2d"; depends=[pracma rgdal sp]; }; - rCBA = derive2 { name="rCBA"; version="0.3.0"; sha256="1jsykb747clzd5j78h50gclf7171hk015yssi02lbai79q359r56"; depends=[arules R_utils rJava TunePareto]; }; + rCBA = derive2 { name="rCBA"; version="0.4.2"; sha256="1ky3426h6idadwr3al6vzglw34xdlq54gl5cxaafwgdilj0p0qmq"; depends=[arules R_utils rJava TunePareto]; }; rCMA = derive2 { name="rCMA"; version="1.1"; sha256="0dswshg80hbgcib5x9w791sh71q5s4435q8sm9dh170v4ngbax0w"; depends=[]; }; rCUR = derive2 { name="rCUR"; version="1.3"; sha256="1f38xbc5n91k2y88cg0sv1z2p4g5vl7v2k1024f42f7526g2p2lx"; depends=[lattice MASS Matrix]; }; rCarto = derive2 { name="rCarto"; version="0.8"; sha256="08813l4xfahjyn0jv48q8f6sy402n78dqsg01192pxl2dfc2i9ry"; depends=[classInt maptools RColorBrewer]; }; @@ -10007,11 +10158,11 @@ in with self; { rClinicalCodes = derive2 { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; rDEA = derive2 { name="rDEA"; version="1.2-5"; sha256="1wsi2dkq9izvbhdqmd4qk8i277r1j38dk59fcmnxnwqvk6ar6nrb"; depends=[maxLik slam truncnorm truncreg]; }; rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; - rDVR = derive2 { name="rDVR"; version="0.1.1"; sha256="19a4f9k65bd49vkn3sxkjdmcpwyawk7gwmvancvqr745gfgs0wzg"; depends=[RCurl]; }; rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; }; - rEDM = derive2 { name="rEDM"; version="0.6.9"; sha256="0825yh82vlkmjkrwbk7xfhdq4c7yq7n4bmmw6x7ywmhbnayqj6b3"; depends=[Rcpp RcppEigen]; }; + rEDM = derive2 { name="rEDM"; version="0.7.1"; sha256="03f5dd8ki13g3xwiji05pjmmgz13j34hjv9hwv7jcq113g1sc509"; depends=[Rcpp RcppEigen]; }; rEMM = derive2 { name="rEMM"; version="1.0-11"; sha256="0ynjn10gcmxs8qnh6idb34ppmki91l8sl720x70xkzcqpahy0nic"; depends=[cluster clusterGeneration igraph MASS proxy]; }; - rENA = derive2 { name="rENA"; version="0.1.4"; sha256="007kgb5n30c4jpbp7q2f0yj5mplb8pvhs8pvghy8zbwrl61n4kx5"; depends=[data_table data_tree doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo RcppEigen RcppParallel RcppRoll scales]; }; + rENA = derive2 { name="rENA"; version="0.1.5"; sha256="1iwz7dk0x9114zjgk9gg3awx3c8lnd9xhzk2bqvsan7v24xqrcgy"; depends=[data_table data_tree doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo RcppEigen RcppParallel RcppRoll rmarkdown scales]; }; + rERR = derive2 { name="rERR"; version="0.1"; sha256="1ymf0v3r2sv9m72c19csk38fy5kmld3i18jh06rir5kxkb5l245p"; depends=[dplyr ggplot2 numDeriv plyr reshape2 survival]; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; rFSA = derive2 { name="rFSA"; version="0.9.1"; sha256="14qpxmzy4vy1fydn8yqh1001mqrgv1i67ai42w61dkk0d4m75z60"; depends=[hashmap tibble]; }; rFTRLProximal = derive2 { name="rFTRLProximal"; version="1.0.0"; sha256="1458gqy2zbaa62vaimawdr1nk0lsgwz1j4pgw21fkw7bskcszz0f"; depends=[data_table FeatureHashing foreach magrittr Matrix Rcpp RcppArmadillo RcppProgress]; }; @@ -10022,8 +10173,8 @@ in with self; { rHealthDataGov = derive2 { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; }; rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; }; rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; }; - rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-8"; sha256="0maws52n4lj2byfyv8fj8npk2qyd3dzy83x5h2s1nmgbjm2m36kj"; depends=[chopsticks rJava]; }; - rJava = derive2 { name="rJava"; version="0.9-9"; sha256="0ilibvhxydnh9yhhi9h9isgkq41xvwj43b5m9dhnsm2w5cziaawk"; depends=[]; }; + rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-10"; sha256="0a00s10yp22fkvk67dkq43sbphcqla65x9j4qpv076bmdchn7arw"; depends=[chopsticks rJava]; }; + rJava = derive2 { name="rJava"; version="0.9-10"; sha256="0y7yg70i3zwbwl4g36js4dqpl51cmwss5ymrsk24d1z07bflp4y9"; depends=[]; }; rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; }; rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; @@ -10038,7 +10189,7 @@ in with self; { rNOMADS = derive2 { name="rNOMADS"; version="2.3.9"; sha256="15l6150vsaa7y2wv896mhdbakxdsg87fx74bbj0rsn0757jss525"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; rODE = derive2 { name="rODE"; version="0.99.6"; sha256="0l518ghfw6283kckqcbh45a35vd73njy05v3dwghhhjdj7v3km8b"; depends=[data_table]; }; rPackedBar = derive2 { name="rPackedBar"; version="0.1.0"; sha256="12jwkch3264m6ksl8rdjirwdzm1g8b4050mm6rysw9v57k3v57ji"; depends=[data_table plotly scales]; }; - rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.1"; sha256="0yk61ck2br81cd40yvqxrzi9s680ii26wbl0wjdam04dyf0vh1cv"; depends=[mvtnorm ssanv]; }; + rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.2"; sha256="1insdfvcn1pirsnf7nwfia0kzgsmh2zpghgfj2yc35ld1r9j2hp2"; depends=[mvtnorm ssanv]; }; rPraat = derive2 { name="rPraat"; version="1.0.8"; sha256="06f97sa43i0b4x8j48higgx5jyj5q73j6mf2730yfm4db6ahz94m"; depends=[dplyr dygraphs readr stringr]; }; rPref = derive2 { name="rPref"; version="1.2"; sha256="19b6rycz73rz3nxymb52gfddqsxprkxazwa8pb75vckk13q1cmj0"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; }; rPython = derive2 { name="rPython"; version="0.0-6"; sha256="1aw9jn45mw891cskr51yil60i55xv5x6akjvfdsbb9nwgdwwrqdp"; depends=[RJSONIO]; }; @@ -10048,66 +10199,66 @@ in with self; { rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; rSymPy = derive2 { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; }; - rTableICC = derive2 { name="rTableICC"; version="1.0.6"; sha256="1wasfkcnbd2azv2v0n02932zxa86lxrvndny2821lvf7xrc9yy55"; depends=[aster partitions]; }; + rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.3"; sha256="0ra34sn4g92r6asrn4la2wbsi2y0hnyx163wwi4v0j6f57bslhdw"; depends=[]; }; rUnemploymentData = derive2 { name="rUnemploymentData"; version="1.1.0"; sha256="0p5hba8iv060szp23s05hvpmwan518ykakm6vqzdcki0inxw0hyv"; depends=[choroplethr rvest stringr]; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; }; - rWind = derive2 { name="rWind"; version="0.4.1"; sha256="19bv69y236sjlkf082wrs38nhijhrpbsnh4vc8phdzg7dj9my09j"; depends=[gdistance Matrix raster]; }; + rWind = derive2 { name="rWind"; version="1.0.2"; sha256="0w109l3hibl1w0g2qj2rqm59qfs9zbry5q8azii86mqpgwxk7zln"; depends=[gdistance lubridate Matrix raster]; }; rWishart = derive2 { name="rWishart"; version="0.1.0"; sha256="1kg2n8lyfdp76fw36m13rlb0qy1ffk8n701ffmf5dgkfp0x8nnn7"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; rabi = derive2 { name="rabi"; version="0.1.0"; sha256="02ldpkqpdvh0b660j34bppw5j9pl3a2b4vkzaaiq4kcangahg2r6"; depends=[numbers polynom stringdist]; }; race = derive2 { name="race"; version="0.1.59"; sha256="13jprlnngribgvyr7fbg9d36i8qf3cax85n71dl71iv0y24al1cy"; depends=[]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; - radiant = derive2 { name="radiant"; version="0.8.0"; sha256="1v8anqn2q2ybv2wzb1c6la9hxmjyvg922xzikdv8491dgicd3dqh"; depends=[AlgDesign psych r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; - radiant_basics = derive2 { name="radiant.basics"; version="0.8.0"; sha256="1x2frv5srb8q3l9arhws861pxyjb4spiajxr9g8fmjq3jjhd63cg"; depends=[dplyr ggplot2 gridExtra magrittr psych r_import radiant_data scales shiny tidyr]; }; - radiant_data = derive2 { name="radiant.data"; version="0.8.1"; sha256="1ylina1jlrmvjkj8pwg0ip5jv1038vnzyckmf542xl7g11x8rvw1"; depends=[base64enc broom car curl dplyr DT ggplot2 gridExtra jsonlite knitr lubridate magrittr markdown pryr psych r_import readr rmarkdown rstudioapi scales shiny shinyAce tibble tidyr]; }; - radiant_design = derive2 { name="radiant.design"; version="0.8.0"; sha256="0n2a0jpjcxxmmr9sbky7v2cnzil3hv6b20yzkyc9lf4a48pqlm4l"; depends=[AlgDesign dplyr mvtnorm polycor r_import radiant_data shiny]; }; - radiant_model = derive2 { name="radiant.model"; version="0.8.0"; sha256="0zlb5ny3s15d1ngdhszkn5wzij4y5fz7c2lwkb9g619pr0ngrwr8"; depends=[car data_tree DiagrammeR dplyr e1071 ggplot2 gridExtra lubridate magrittr NeuralNetTools nnet pryr psych r_import radiant_basics radiant_data rpart sandwich shiny stringr tidyr yaml]; }; - radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.8.0"; sha256="0l3rk5045apjb2jx04jf3mwjixg8cjwrgmz83km9627n93cabs2l"; depends=[car dplyr ggplot2 Gmedian GPArotation gridExtra magrittr MASS pryr psych r_import radiant_data radiant_model scales shiny wordcloud]; }; + radiant = derive2 { name="radiant"; version="0.9.5"; sha256="0a5dvmvnvn2jd53grvagbxw6lb4mp3l809911dlh2rr4b9z9nkyx"; depends=[AlgDesign psych r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate rstudioapi shiny]; }; + radiant_basics = derive2 { name="radiant.basics"; version="0.9.5"; sha256="0xwsgi4nr9i7wi699cgmfdyb7nxf98af4vgl56i1bbnxl8k0bnxz"; depends=[dplyr ggplot2 gridExtra magrittr psych r_import radiant_data rstudioapi scales shiny tidyr]; }; + radiant_data = derive2 { name="radiant.data"; version="0.9.5"; sha256="0mbxfqn79nphii4hb6kxl2wc0w0ra16y378rp2yw9a9926zdb7mb"; depends=[base64enc broom car curl dplyr DT ggplot2 glue gridExtra jsonlite knitr lubridate magrittr markdown plotly psych r_import readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce tibble tidyr writexl]; }; + radiant_design = derive2 { name="radiant.design"; version="0.9.5"; sha256="1lqim49ifw019aqfrz2pqa81yn2kg5hixn3ywd5hfj670n5sd5hr"; depends=[AlgDesign dplyr mvtnorm polycor r_import radiant_data rstudioapi shiny]; }; + radiant_model = derive2 { name="radiant.model"; version="0.9.5"; sha256="1r1gz8hlrihadzz4x73ccrxqkz744lbr8h29fa77ghkiy9y55abq"; depends=[car data_tree DiagrammeR dplyr e1071 ggplot2 gridExtra lubridate magrittr NeuralNetTools nnet psych r_import radiant_basics radiant_data rlang rpart rstudioapi sandwich shiny stringr tidyr yaml]; }; + radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.9.5"; sha256="1rpk757r80l38y0y4w94h363xdmrv7mp6qpnwpcbrza20w9dhqvs"; depends=[car dplyr ggplot2 ggrepel Gmedian GPArotation gridExtra magrittr MASS psych r_import radiant_data radiant_model rlang rstudioapi scales shiny]; }; radiomics = derive2 { name="radiomics"; version="0.1.3"; sha256="1ra94yaqw88slznhyv70kbfricxi44m4pnx1zh4ijghm491rphr5"; depends=[Rcpp reshape2 spatstat]; }; - radir = derive2 { name="radir"; version="1.0.2"; sha256="09lcq8ax5x5yk3sqx15rvw3vyi8fyfzgs76kxjhf7hcw4qnib46d"; depends=[hermite]; }; + radir = derive2 { name="radir"; version="1.0.3"; sha256="0v1w0jy19fqscwkggyjashb6n9r6xjc0d971zw0lqnh1ap3chg0y"; depends=[hermite]; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2"; sha256="04f9gvwpgrx54dgbjjixlxa2056aqcz2kryn4jplwf5fc0vj1lyn"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape sfsmisc snowfall]; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.1"; sha256="0zjqrvy1k1lz4caakcj3c6l2j637wp6nxbzfj0gvcn2c4pjcrdyp"; depends=[abind expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="0.5"; sha256="0h09h9ws9c2d9xc00w4hl000h0kbvq16lz4vgv1w93am8zmsp4wm"; depends=[futile_logger limSolve]; }; - railtrails = derive2 { name="railtrails"; version="0.0.3"; sha256="0dbyqviig0sadialqr66x93v3xn8y4qgdb323mji7rasdp5w8ws4"; depends=[tibble]; }; + railtrails = derive2 { name="railtrails"; version="0.1.1"; sha256="1hi55rcxmr7k3na3rpjqmd5fpgn51bymrp7yxmw45ff7mlzpa5h6"; depends=[tibble]; }; rainbow = derive2 { name="rainbow"; version="3.4"; sha256="09vxdb4j099grnlx10995b74r3h9g1vs8div3nywgnslaj8x7pay"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; raincpc = derive2 { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; }; rainfreq = derive2 { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; }; rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; }; ramchoice = derive2 { name="ramchoice"; version="0.2"; sha256="0br6n6mxcz099rj3dh1sp28wy9g5rqwh0arg0s968pc5h0jfbai5"; depends=[MASS]; }; - ramcmc = derive2 { name="ramcmc"; version="0.1.0"; sha256="0s5jgjqkschr64srblppv9lbvhynlpfiy8cy12fywpmnbv8viazq"; depends=[Rcpp RcppArmadillo]; }; - ramidst = derive2 { name="ramidst"; version="0.1.0"; sha256="1q4lvq2c2vj9xrm2p2w2qjsl4qvwcl6y54y68mmbd6cw7wqpffjj"; depends=[rJava]; }; + ramcmc = derive2 { name="ramcmc"; version="0.1.0-1"; sha256="0x8q0bah8fcyqlwap9iw52xhl6b989va5c144kgmfimh2b4yinc7"; depends=[Rcpp RcppArmadillo]; }; ramify = derive2 { name="ramify"; version="0.3.3"; sha256="0cxmkxhshg0vrcxai2gbm4iih04f44liv5nh5jiq85hjz8qbhdi2"; depends=[]; }; ramps = derive2 { name="ramps"; version="0.6-15"; sha256="0c7y64z0ysjy0kh234xfqhbwwn1vgscvp1n4l2fjk5s5xz8633pn"; depends=[coda fields maps Matrix nlme]; }; ramsvm = derive2 { name="ramsvm"; version="2.0"; sha256="1q6ag3x1mgkyw8nsxghhk9yrcr0ybwilsx1yzg98bqsmxrrqk17q"; depends=[doParallel foreach]; }; randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; - randgeo = derive2 { name="randgeo"; version="0.2.0"; sha256="056c522zw2x4ab7z2bpkw9byfn1gzsfavbjaxdgwi4n934f46h14"; depends=[]; }; + randgeo = derive2 { name="randgeo"; version="0.3.0"; sha256="14hlh9k66lcbf0xhnxx12rrnyl8awqcsm3csvxdz23s5wnm2ya5p"; depends=[]; }; randnet = derive2 { name="randnet"; version="0.1"; sha256="1mpz3dsbzd5hffv2v5p6jdp0z07f7rhgcjinr1lwggvxw37xwrkj"; depends=[AUC entropy irlba Matrix poweRlaw RSpectra]; }; random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-2"; sha256="1ybwfn3hdwisxjn85vqrib1zhk8dcddbarbwjdf1vn27ih3c4h2c"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-14"; sha256="0kbmm0l42fc2d1rdq0l7k09d34kd87q4lx651ffsic4y84h8kf7l"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.9"; sha256="0gqqm3784krl6xdx7j6xvvyi2rjbyi6c8shm44yvq59is5i7fypc"; depends=[data_table dplyr DT dtplyr GGally ggplot2 ggrepel MASS randomForest reshape2 rmarkdown]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="2.5.1"; sha256="1p5a5z7ddhnsrln8vpdrwvxbgknwdigczjw8vpxzbkckmf6qfidd"; depends=[]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="2.6.1"; sha256="0wmqy1m04iknqzfajhfcb6cjpl9h35x13ihsdx91l1d1yki7yq71"; depends=[]; }; randomGLM = derive2 { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; }; randomLCA = derive2 { name="randomLCA"; version="1.0-15"; sha256="10rx2ah50dcjxz5y492c59d3pn0dvlgjaxfdf8sknkf6s4pmwkis"; depends=[boot fastGHQuad lattice Matrix]; }; randomNames = derive2 { name="randomNames"; version="1.0-0.0"; sha256="12q5bs65qivddiaxbsp128j94h2vyrgjvmm80d52r36ffbaigl09"; depends=[data_table]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; randomcoloR = derive2 { name="randomcoloR"; version="1.1.0"; sha256="0sirxgrf7xf470d7lls45c698l6c078hqjkjcswmwz6kphykrzhg"; depends=[cluster colorspace Rtsne scales stringr V8]; }; randomizationInference = derive2 { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[matrixStats permute]; }; - randomizeBE = derive2 { name="randomizeBE"; version="0.3-3"; sha256="0vdvgk2b1h1lsj0ka01lwldfxanngir91axc8ywa6pg12hrdkkb0"; depends=[]; }; - randomizeR = derive2 { name="randomizeR"; version="1.4"; sha256="0l7gvpm52fwbz79vgy7vn4z2n4gqigimdj6r9drm3lfzbylmx3js"; depends=[ggplot2 plotrix]; }; - randomizr = derive2 { name="randomizr"; version="0.12.0"; sha256="0g0n63srydljvj4spjl5r08khq0sqlhsj01s150m31cxf23zdjli"; depends=[]; }; + randomizeBE = derive2 { name="randomizeBE"; version="0.3-4"; sha256="1x1lh1rrw7ma2wls0dflz18lk9h0qdy9gb11af95hqpabqc85rd7"; depends=[]; }; + randomizeR = derive2 { name="randomizeR"; version="1.4.2"; sha256="0jv0mc40cy4w17jrsb2023l7k7cnzl9czdigl4shq9nx67mccdwx"; depends=[ggplot2 plotrix]; }; + randomizr = derive2 { name="randomizr"; version="0.16.0"; sha256="0lsba2nzzx8vnkyj8fzf9lfnkq743qdzir9f15pk23xycjzlncfs"; depends=[]; }; + randomsearch = derive2 { name="randomsearch"; version="0.1.0"; sha256="176grqp6rv4hiyzr9fzx2zz360h5nkrw39gidclgmrp7ckn5qs4v"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; + randquotes = derive2 { name="randquotes"; version="0.1.0"; sha256="1rpcmxkpq8lgfzrjaipf5x573gm6rc31c9fafghiy99c0iphf46w"; depends=[curl jsonlite xml2]; }; randstr = derive2 { name="randstr"; version="0.2.0"; sha256="17593lbk6r089yasafd21i3v90ya9n92rflpzl0qicd2kqqk2gdh"; depends=[random stringi truncnorm]; }; randtests = derive2 { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; randtoolbox = derive2 { name="randtoolbox"; version="1.17.1"; sha256="13akf13qi4yhj9gapym05074b1qzk03vgysy81qsd73pd8r107ls"; depends=[rngWELL]; }; rangeBuilder = derive2 { name="rangeBuilder"; version="1.4"; sha256="1jjy1d3kljysm3mqgdszdi6incbmg2di63akxswfaiqcp1m68a6y"; depends=[alphahull cleangeo pbapply raster Rcpp rgdal rgeos sp stringi]; }; - rangeMapper = derive2 { name="rangeMapper"; version="0.3-1"; sha256="005r97zwz0czsp543h1g3zrys00s6wdyk0ji9pk7jn625i02cbdk"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; - rangemodelR = derive2 { name="rangemodelR"; version="1.0.1"; sha256="04zv8a4nhin9masvbw1cmbwdkls4wgq81xfw6kg0wdh1hpqjz1z0"; depends=[]; }; - ranger = derive2 { name="ranger"; version="0.9.0"; sha256="1pilj5pxl8jl0gsy9vsyqxqdqfcxzvphbgvrlp4hf7r9mrfw9v0p"; depends=[Matrix Rcpp RcppEigen]; }; + rangeMapper = derive2 { name="rangeMapper"; version="0.3-4"; sha256="0qrcxbh8saflqjmaa18fcyk5cqk6h4rz92zhqckswyqynx6m0cps"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; + ranger = derive2 { name="ranger"; version="0.10.1"; sha256="12z67xkgdmr5cflpd6cln0mn5xxajanqbfwlckv6cfma0gvf2z1j"; depends=[Matrix Rcpp RcppEigen]; }; rankFD = derive2 { name="rankFD"; version="0.0.1"; sha256="1zb9gxvsmv46mpw5znskhfjxnwkr59hdixcly6i3r78yaqgca0dz"; depends=[coin lattice MASS Matrix]; }; rankdist = derive2 { name="rankdist"; version="1.1.3"; sha256="1hdafy2zzn7hwl1lx5jksgi974zjn49dwih5s2zdyv4nnmmai003"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; @@ -10117,8 +10268,7 @@ in with self; { rappdirs = derive2 { name="rappdirs"; version="0.3.1"; sha256="0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"; depends=[]; }; rapport = derive2 { name="rapport"; version="1.0"; sha256="1i1zawar5yxw23km74mrvaxnc9hr06kqjvbm046c09cqi6pw0hjh"; depends=[pander rapportools stringr yaml]; }; rapportools = derive2 { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[pander plyr reshape]; }; - raptr = derive2 { name="raptr"; version="0.1.1"; sha256="17k392vid1is0wl5iyr8b41xyw5y0ad7drvlmrcsda7683yal3p3"; depends=[adehabitatHR assertthat BH boot doParallel gdalUtils ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; }; - rare = derive2 { name="rare"; version="0.1.0"; sha256="05bnh2m1sah6zvzvmm3bq1i2n5kmhhxnlzbrjxzmb9vj6skaglv1"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; + raptr = derive2 { name="raptr"; version="0.1.2"; sha256="17aba9jxlvvf2946wy2y0ck5j85sqzkr8q1yk68cdqkf45lxkvz8"; depends=[adehabitatHR assertthat BH boot doParallel gdalUtils ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarhsmm = derive2 { name="rarhsmm"; version="1.0.7"; sha256="0pvqa6f0ib1jb0rwc6wv6hfinncb21v2g0y0hsy5l33gdagjw2sz"; depends=[glmnet Rcpp RcppArmadillo]; }; @@ -10128,8 +10278,9 @@ in with self; { rasterImage = derive2 { name="rasterImage"; version="0.3.0"; sha256="0csx7wqwxdsddypd1c9wv74gcyymasn9n6pn05a35j6xhqbk2zp3"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; }; rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; }; - rasterVis = derive2 { name="rasterVis"; version="0.44"; sha256="041a3d6vcvsah6qm4mf2nc70sln9djlv2ymq389icagiwdqjw9xh"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp viridisLite zoo]; }; + rasterVis = derive2 { name="rasterVis"; version="0.45"; sha256="0x1d28jn6l78lhccbnlnzyr18734f16rcfnfyl9vqpkrn7sgwc3i"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp viridisLite zoo]; }; ratelimitr = derive2 { name="ratelimitr"; version="0.3.9"; sha256="0w6i9czcbj8ipd9nn4w4h4pqk6xd8anh00cn60hss9hs18fcb21d"; depends=[assertthat]; }; + ratematrix = derive2 { name="ratematrix"; version="1.0"; sha256="09nbgybgdgdkc6bdcxjiy1kdgv398lgih1aqzd7abj5lndlh8pny"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rateratio_test = derive2 { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; }; raters = derive2 { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; }; ratesci = derive2 { name="ratesci"; version="0.3-0"; sha256="1mdx47xpgjrjbb3lybajdmxb87dqr6cvv3fsvwfx0n629mjbih4z"; depends=[]; }; @@ -10137,15 +10288,15 @@ in with self; { ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; }; rattle = derive2 { name="rattle"; version="5.1.0"; sha256="0xxf2wpazsk29y2byyk010n59vmzmhm4phpsqvklmsr1v3m10pvp"; depends=[cairoDevice dplyr ggplot2 magrittr RGtk2 rpart_plot stringi stringr tidyr XML]; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; }; - raw = derive2 { name="raw"; version="0.1.5"; sha256="0w0k35izvsi8vwp38har4ygh1zxnz7hfla8d8fcbvckpfbkwpggp"; depends=[]; }; + raw = derive2 { name="raw"; version="0.1.6"; sha256="0hnqwa9pwj3k2y0bs6hxrvbwksjyq0q6m73c9hhlafg8g3lkyxnf"; depends=[]; }; rbacon = derive2 { name="rbacon"; version="2.3.4"; sha256="1va1rap2n6mcjfzclqg5h58ggrs2kb4nlaam5ch984w9rzq59g2l"; depends=[coda Rcpp]; }; - rbamtools = derive2 { name="rbamtools"; version="2.16.6"; sha256="1sb18qx68fnj1d598lw8fkqnxp3c5s704g6cnhwy299gppj3xg1d"; depends=[refGenome]; }; - rbcb = derive2 { name="rbcb"; version="0.1.3"; sha256="0bghbxrgy4lpxyazqlm90i42dav1kjca02l2nmw320v01rvw5qvd"; depends=[httr jsonlite tibble xml2 xts]; }; + rbamtools = derive2 { name="rbamtools"; version="2.16.11"; sha256="1pr1isq9yk5mpi41cnihg4zn5g9az7yr9m42759hibqqyb6nw78a"; depends=[refGenome]; }; + rbcb = derive2 { name="rbcb"; version="0.1.5"; sha256="0w76jgl75i36xb150m5vlqbd6k0nhxx34fcl0vw9l1in5pwd6qgw"; depends=[httr jsonlite tibble xml2 xts]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; - rbgm = derive2 { name="rbgm"; version="0.0.4"; sha256="0sqi42vz3fdgp7gpa4jjh8dxz3iwwagw9in70jpz6fc18ivizkp1"; depends=[dplyr geosphere raster sp tibble]; }; + rbgm = derive2 { name="rbgm"; version="0.0.5"; sha256="1gz9hxlwmj2ch1ds6mx1nlkwy4fm811jkz5fz3cl6675n11bjdpg"; depends=[dplyr geosphere raster readr rlang sp stringr tibble]; }; rbhl = derive2 { name="rbhl"; version="0.8.0"; sha256="1avx36as99za19acjh7adb72ckdn69rmiwzcrrqxskzny56vxf0d"; depends=[crul jsonlite plyr tibble xml2]; }; - rbi = derive2 { name="rbi"; version="0.9.0"; sha256="0am6r8dy3nfahprkyvap73x3b6vxgc604v7mf9wbb9vwjja00xzp"; depends=[data_table ncdf4 reshape2]; }; + rbi = derive2 { name="rbi"; version="0.9.1"; sha256="0jfaakzl15dz6bsbcd6y2pnf3bdccs3bx90c6hzsjpvck7fcvxpi"; depends=[data_table ncdf4 reshape2]; }; rbiouml = derive2 { name="rbiouml"; version="1.8"; sha256="0qvc896sf6idczbxix3klf56paxf0wpfbmga8qqlcyjasv1dsdql"; depends=[RCurl RJSONIO]; }; rbison = derive2 { name="rbison"; version="0.6.0"; sha256="09mbhk56ns1qldgcj8qard3dsvsfbnlrq4s4drc46lr1s8lqjd1h"; depends=[crul dplyr ggplot2 jsonlite mapproj plyr sp]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; @@ -10157,63 +10308,64 @@ in with self; { rbugs = derive2 { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; rbvs = derive2 { name="rbvs"; version="1.0.2"; sha256="1wzxz2ca8f1phhbqr9p7c8sk09cyrdq5jc45g4ddrqvi2q29k28y"; depends=[]; }; + rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; - rcarbon = derive2 { name="rcarbon"; version="1.1.0"; sha256="0y201lrmdisw7rmzaxsyiwdj4kms7q1dvw34ial28989ci1rslrw"; depends=[doParallel foreach sp]; }; + rcarbon = derive2 { name="rcarbon"; version="1.1.3"; sha256="08gg72gakns9akcsi5j79jxsx8cngbzf3sg0qvpj22xsrp7amxr2"; depends=[doParallel foreach knitr sp]; }; rcartocolor = derive2 { name="rcartocolor"; version="0.0.22"; sha256="1dh1n01v70sfmymg1w0f272j6nwnrzawqx5x4ljgh46pzqprx56r"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; }; - rcbsubset = derive2 { name="rcbsubset"; version="1.1.3"; sha256="16wd0j0z2ll8hqrk27fss4k9fyjw6xwx30xkrphx9jj2ws08wibl"; depends=[MASS plyr]; }; + rcbsubset = derive2 { name="rcbsubset"; version="1.1.4"; sha256="0sfsmnxs4c8blzg0bb2ffb2xcsjv7pp39arnda988f7b2aas59wj"; depends=[MASS plyr]; }; rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; rcdd = derive2 { name="rcdd"; version="1.2"; sha256="1s7idrfvl0hhyckrfiakszqw6fk34f9iiyxspzya3rqyhih014ay"; depends=[]; }; - rcdk = derive2 { name="rcdk"; version="3.4.5"; sha256="0wybaa5wmxixqlrf84sph3shg495jvawsxqd7xg8adp7jixa8iiv"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; + rcdk = derive2 { name="rcdk"; version="3.4.7"; sha256="1r7cqr9adcbvw5zcnh0vpfahi5ywcjk8axhpj1pqrv24lb208c6j"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.0"; sha256="05g0y00bw1bqykfbwn4q42krwcfl50jcavaw7yyw9a5m34hvw0l8"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.0"; sha256="1qn2pzch5yk771jsjcsmfsi5vddfb2w50vfqlkmsl6nf5z6sdq9k"; depends=[knitr rmarkdown]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rcicr = derive2 { name="rcicr"; version="0.3.4.1"; sha256="1sa13sbhx64cf8szr2811iq4a1asb8d3k0igxw6fbssij2lwbxzp"; depends=[aspace dplyr jpeg matlab scales]; }; - rclimateca = derive2 { name="rclimateca"; version="1.0.1"; sha256="1mv4i290x0bwvap5njizal5z0ccbkqjfyk2pmcbx4sml5crhx6yy"; depends=[digest dplyr httr lubridate magrittr mudata2 prettymapr purrr readr reshape2 rlang stringr tibble tidyr]; }; + rclimateca = derive2 { name="rclimateca"; version="1.0.2"; sha256="012p6vj78m43y8n85diaf5z11h4v0p4s898jmlipvsha11q60csn"; depends=[digest dplyr httr lubridate magrittr mudata2 prettymapr purrr readr reshape2 rlang stringr tibble tidyr]; }; rclipboard = derive2 { name="rclipboard"; version="0.1"; sha256="0qphr3qrp0k2gnzk27bgfiq3ff6b8564gmkrjw1kri1p7ilf71wx"; depends=[shiny]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.2.1"; sha256="04gh0drvkikn91i5zmpixhrhyjnsyxwz8k8bx4kgwwrmh1dc7f2s"; depends=[callr clisymbols crayon digest withr]; }; - rcompanion = derive2 { name="rcompanion"; version="1.13.0"; sha256="1smkwp7xjkwiix1m7cx13hwnmka8nqv6m3s5wlzd02l9grc5ldrp"; depends=[boot BSDA coin DescTools EMT hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; }; - rcongresso = derive2 { name="rcongresso"; version="0.3.2"; sha256="15b7m1z5lr66kwhl8v8k2car4id9ssd0ypz75z259v8c1w0k7xkl"; depends=[dplyr httr jsonlite magrittr tibble tidyr]; }; + rcompanion = derive2 { name="rcompanion"; version="1.13.2"; sha256="0kpr0pxfi8al6zdx0imp9nf9m98h8srimij7gf018ik4v6kjyjiv"; depends=[boot BSDA coin DescTools EMT hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; }; + rcongresso = derive2 { name="rcongresso"; version="0.4.6"; sha256="1xd07vlbcp3msmwvg2nk7acdx513v2wfbq64na0045rsv2v96m44"; depends=[dplyr httr jsonlite magrittr stringr tibble tidyr]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.1.0"; sha256="13nfziqxxljnczn3idq3zlc9xkklalfnxbakvhs5bw19jmbd11ba"; depends=[crul jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="1.2.0"; sha256="0nxd2arzz2617xxcngvcrrrsky9f1b9zdmpv81zr89y08b3xh9f1"; depends=[jsonlite]; }; - rcqp = derive2 { name="rcqp"; version="0.5"; sha256="0iww9pbfxlvr68csig9nfi48nrqn2j6viqwwwggk789bk6ffz00a"; depends=[plyr]; }; rcreds = derive2 { name="rcreds"; version="0.6.6"; sha256="1sdrdgn53kgcdnxfjs8jh0h538vb3b9ixz74lbnp54yp09jpqsri"; depends=[collectArgs digest jsonlite magrittr]; }; rcrossref = derive2 { name="rcrossref"; version="0.8.0"; sha256="01k3jpd6awan8r4kc5wjw0did30i2bafzjr8mwaaqv87gni2yiyf"; depends=[bibtex crul dplyr jsonlite miniUI plyr R6 shiny stringr xml2]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; - rcss = derive2 { name="rcss"; version="1.2"; sha256="08hiprjcjvc138laqrvlvrmn664b63x829ammzgrwjqcsj4kpmds"; depends=[Rcpp RcppArmadillo rflann]; }; - rcube = derive2 { name="rcube"; version="0.1"; sha256="15dyxwsj7f2annf3a2wi158m9s38jfl31lhwfi9shlzi5xadcwjk"; depends=[]; }; + rcube = derive2 { name="rcube"; version="0.2"; sha256="1vfh0bg0awynbv0kafsn7sqj7sc2rjaap9rmy717qv9p0n6gkypr"; depends=[magrittr]; }; rcure = derive2 { name="rcure"; version="0.1.0"; sha256="1pcdc168bwn0b90xy8sdwrm2yvhj26xj11wm8z84m48sxy56j4v8"; depends=[arm MASS plyr smcure survival]; }; rcv = derive2 { name="rcv"; version="0.2.1"; sha256="0i5z3a918ykl56dv3dvzwwcv550gvjjdg5kfh63jlpaxn9ybmv3f"; depends=[dplyr readr stringr tibble tidyr]; }; rda = derive2 { name="rda"; version="1.0.2-2"; sha256="1g2q7c0y138i9r7jgjrlpqznvwpqsj6f7vljqqfzh2l6kcj43vjj"; depends=[]; }; - rdatacite = derive2 { name="rdatacite"; version="0.3.0"; sha256="10ivlng40f213iag30ygfihxx0415z2jdz3kx329wd4xjcj7fy02"; depends=[crul jsonlite oai solrium]; }; + rdatacite = derive2 { name="rdatacite"; version="0.4.0"; sha256="14p8albilnzf882m499zfps77jrx0zav9wpz3m047xgs2msnwxqw"; depends=[crul jsonlite oai solrium]; }; rdatamarket = derive2 { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[RCurl RJSONIO zoo]; }; rdataretriever = derive2 { name="rdataretriever"; version="1.0.0"; sha256="1a1dbzs1jravbhidv9wcs52qbd6zf7wf26hixpqjwiq8gsq9l5gh"; depends=[]; }; rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; - rddapp = derive2 { name="rddapp"; version="1.0.0"; sha256="0js2y34k971ydv4nx2g4lr3mnpr3pagdiwqfi9l5431fxxr0pf0n"; depends=[AER Formula lmtest sandwich shiny]; }; + rddapp = derive2 { name="rddapp"; version="1.1.0"; sha256="0zdm54hlxqp7r21fwdka33syjsrf6flrvwqm86hpwhg95880ixkk"; depends=[AER Formula lmtest R_utils sandwich shiny]; }; rddensity = derive2 { name="rddensity"; version="0.2.2"; sha256="10530il8fxpgcads6yvj09jwanldlpvjgjqcknl2wly4gmwcwjq9"; depends=[ggplot2 lpdensity]; }; rddtools = derive2 { name="rddtools"; version="0.4.0"; sha256="1z9sl9fwsq8zs1ygmnjnh3p6h9hjkikbm4z7cdkxw66y0hxgn96s"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd sandwich]; }; + rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; rdefra = derive2 { name="rdefra"; version="0.3.4"; sha256="05fskap0vvrq08m4gql9gczy04lc3dgxgjcsb57dgp3nng358sf6"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; rdflib = derive2 { name="rdflib"; version="0.1.0"; sha256="1xq378nfvbk8b2nbnr6yswqr351pgli7jcmhcr1ipynkl93rl5qm"; depends=[jsonld readr redland stringi]; }; rdfp = derive2 { name="rdfp"; version="0.1.2"; sha256="1kznr5p5mhplgpgmc0f4vrs1fwpivwjy52hwfc8k0q0vx53h3fs2"; depends=[curl dplyr httr lubridate plyr purrr readr XML xml2]; }; + rdi = derive2 { name="rdi"; version="1.0.0"; sha256="1c49mkxfyxhqz8fc155kgy1k5by0y2c1ahy8k6pn9k8l1j4m4m2q"; depends=[beanplot gplots pdist stringr]; }; rdian = derive2 { name="rdian"; version="0.1.1"; sha256="0i4ljcqhmrwrqbhi321iffypxj4kndx47ssljnixr3fx2lmqh0q1"; depends=[curl httr]; }; - rdist = derive2 { name="rdist"; version="0.0.2"; sha256="0rwv8brambwki3jzpq250lk0k7nmvlzm80szy4nkhdl2zxwriv0a"; depends=[Rcpp RcppArmadillo]; }; - rdiversity = derive2 { name="rdiversity"; version="1.0"; sha256="0x6s9028v4xcc54yy4977yqw5mrsbqlrm5b9drj05c64mavhm4sq"; depends=[ape ggplot2 ggthemes phangorn phytools plyr reshape2 tibble tidyr]; }; + rdist = derive2 { name="rdist"; version="0.0.3"; sha256="1jp3s4293h973dpz0waq9abpd8ibp4gxdyk3bwn7a32zfpk4kjza"; depends=[Rcpp RcppArmadillo]; }; + rdiversity = derive2 { name="rdiversity"; version="1.2.1"; sha256="0j67b9mnq2xfbi2hrn1x9vgdv63779d0rcbzndljh37b1x5zlr22"; depends=[ape ggplot2 ggthemes phangorn phytools plyr reshape2 tibble tidyr]; }; rdlocrand = derive2 { name="rdlocrand"; version="0.3"; sha256="1cv69iy5sx9kdplpk9hnriqzgrm5mjbmhax4cybszhsyaly6r78d"; depends=[AER sandwich]; }; + rdmulti = derive2 { name="rdmulti"; version="0.1"; sha256="0a2nppb59054ns0ya3igva7xjaivnsj023fd30pzwca99zsmnx6s"; depends=[rdrobust]; }; rdnb = derive2 { name="rdnb"; version="0.1-1"; sha256="1mg40jad79mk95ndnljvfvyh9rhbxkw7inpg2vbsixf1ywdljri3"; depends=[brew httr xml2]; }; - rdomains = derive2 { name="rdomains"; version="0.1.7"; sha256="1w6jvwzd9lwha4qkf8rhd1g3cpr79fsl4rrmh5chdnbahqg60gh9"; depends=[aws_alexa curl glmnet httr Matrix rlang RSelenium urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpla = derive2 { name="rdpla"; version="0.2.0"; sha256="0d32bp68z1agymcmjwnds4fkblhjrcx8i2q6f5b7sl4kdfdbjchf"; depends=[crul data_table hoardr jsonlite tibble]; }; rdpower = derive2 { name="rdpower"; version="0.1"; sha256="1pi0g980zgy0h3kyiksnbpi59fksm17g9lxinqjf7xiam7pgw99n"; depends=[rdrobust]; }; rdrobust = derive2 { name="rdrobust"; version="0.99.1"; sha256="18hq4nmyf8327qdbh7m8y0av6f21pcxaxfqs0qrc07yf6sdcj6ri"; depends=[]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.1"; sha256="1f4ysck58dm40k4wn9nfjaxym0mbgfkm146iidfkz7agmd1x0xyl"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; - rdryad = derive2 { name="rdryad"; version="0.3.0"; sha256="18vjq5amaian174ywymsx1px7ckirk36386h66lsq0h87qwnrwj7"; depends=[crul curl oai solrium xml2]; }; - rdwd = derive2 { name="rdwd"; version="0.10.1"; sha256="0w1wd1qxisdqd04ybcacbjjsjsvhjd152jcfjljzv2d20ha82kcn"; depends=[berryFunctions pbapply]; }; + rdryad = derive2 { name="rdryad"; version="0.4.0"; sha256="19ca618hymvpk5byrrglc6iidsgm6wn43fypspssa7b3r1c4xhdc"; depends=[crul curl data_table oai solrium tibble xml2]; }; + rdwd = derive2 { name="rdwd"; version="0.10.2"; sha256="18ghcg1arm5k2gan2h71bx0h27hsqr0mkajb5sha0ijyby3wa4h8"; depends=[berryFunctions pbapply]; }; re2r = derive2 { name="re2r"; version="0.2.0"; sha256="0xv355h4bps4a0picxmi6i15niq4knlail80fp9xvszyn72pm8gq"; depends=[htmlwidgets Rcpp RcppParallel stringi]; }; reGenotyper = derive2 { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; - reReg = derive2 { name="reReg"; version="1.1-2"; sha256="13xnxpsa5pk39sp6pq9qvj4m0pjhvidfbjsx1s9qdczrvm6zsl3c"; depends=[aftgee BB ggplot2 MASS nleqslv plyr SQUAREM survival]; }; + reReg = derive2 { name="reReg"; version="1.1.4"; sha256="0333r1rv9nshxmg7x2s5pdf7mk7pmpxdzfk617pmjkvf7qbfqfpa"; depends=[BB dplyr ggplot2 MASS nleqslv plyr purrr SQUAREM survival tidyr]; }; reactR = derive2 { name="reactR"; version="0.2.0"; sha256="17jdcby95fxfa3imalllnqsp16py5vqqj4y0za4wli91vd37555q"; depends=[htmltools]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.8.5"; sha256="1qmimfxwh6d7s5qrnnk20i2f9l5j1ci3wpfs3qlmggz69jzf589m"; depends=[]; }; @@ -10223,21 +10375,21 @@ in with self; { readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.6.4"; sha256="1kj648phxvpg480fdhr2sj4l8q306gjdl886zqnkwxif5mw1aq7g"; depends=[cellranger readr xml2]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; - readability = derive2 { name="readability"; version="0.1.1"; sha256="19csrvnl1gslzamn46w5r0q4x12g56zr11m4lwp6rzwd5wcnj9ra"; depends=[data_table ggplot2 syllable tidyr]; }; - readbitmap = derive2 { name="readbitmap"; version="0.1-4"; sha256="08fqqsdb2wsx415mnac9mzl5sr5and0zx72ablnlidqfxv8xsi9d"; depends=[bmp jpeg png]; }; + readabs = derive2 { name="readabs"; version="0.2.1"; sha256="0zm8n036qrh61ywba411x36zlda6n8iq1vv66d4akv55xz91f3bx"; depends=[dplyr readr readxl rsdmx sjmisc stringr tidyr]; }; + readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; readbulk = derive2 { name="readbulk"; version="1.1.0"; sha256="0m02isvja0ihvy1fscjdl5f9gfdlmfmabgvpirgd2m9j3lz6mi8s"; depends=[plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; readit = derive2 { name="readit"; version="1.0.0"; sha256="1sq2spjgdc9rq8cr5i9qjmqd4vcf7cknpx5dndwjdqrv112y8bk9"; depends=[crayon haven jsonlite readr readxl]; }; readobj = derive2 { name="readobj"; version="0.3"; sha256="0hwxfk27azay8hjz702b10cg395is06wnypqdw4788gm25d0i041"; depends=[Rcpp]; }; readr = derive2 { name="readr"; version="1.1.1"; sha256="1cvw5wdcqk88cp5fyv678mnmp66l3whcd2yh33p2qvx0168bja8s"; depends=[BH hms R6 Rcpp tibble]; }; - readroper = derive2 { name="readroper"; version="0.9.0"; sha256="1ikw114gc71lg3snawz7bfpd2mk2m1181183sz0lsc5sgl67bb17"; depends=[readr]; }; - readstata13 = derive2 { name="readstata13"; version="0.9.0"; sha256="06qx40v4n217wi379d08w7kc9wlbxlyz9jqcsc85099vgab7l993"; depends=[Rcpp]; }; - readtext = derive2 { name="readtext"; version="0.50"; sha256="1il7zfm092vvns8manz8lkj34q1w4gw931agkpk83cvf1618l5nl"; depends=[antiword data_table httr jsonlite pdftools readODS readxl streamR stringi tibble XML]; }; - readxl = derive2 { name="readxl"; version="1.0.0"; sha256="1bf7gxw9r11m4llyymplxiaa4gzgyj4bwmwad5in756pzq3jzmpv"; depends=[cellranger Rcpp tibble]; }; + readroper = derive2 { name="readroper"; version="0.9.1"; sha256="153iy144c4yxcs2cwr73czy69b4fj4q1g77rb8qmvp6blfwdcd71"; depends=[readr]; }; + readstata13 = derive2 { name="readstata13"; version="0.9.2"; sha256="02mqwpzn7n3pqjxivnd1vlfc47xkyiywfz594x0f6vd2dym8rdwd"; depends=[Rcpp]; }; + readtext = derive2 { name="readtext"; version="0.71"; sha256="1blcsk1d78q0s1bijsrzrfrvhgbsq3qi1r9w3i51h1r9g3v9p87f"; depends=[antiword data_table digest httr jsonlite pdftools readODS readxl streamR stringi tibble xml2]; }; + readxl = derive2 { name="readxl"; version="1.1.0"; sha256="05ii8knrg4jji6h7bv6bfpn279b6x52yrskdx5rv7b0hcpy22gdn"; depends=[cellranger Rcpp tibble]; }; realestateDK = derive2 { name="realestateDK"; version="0.1.0"; sha256="02y3c2zww9jakh9a0jqxkgcwshjz1hd5mw63603hyic7q4a07iv3"; depends=[statsDK]; }; reams = derive2 { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; rebird = derive2 { name="rebird"; version="0.4.0"; sha256="1awwjr0gsd7hksh84fz5p17qwd857zn03fc2q0kzncy6q6iiw481"; depends=[dplyr httr jsonlite]; }; - rebmix = derive2 { name="rebmix"; version="2.10.1"; sha256="1ccdcmbcnlm0i3r6h09v85wdq4c8gz9dvvbfd2a5zx3ikwfm4wri"; depends=[mvtnorm]; }; + rebmix = derive2 { name="rebmix"; version="2.10.2"; sha256="1m6h85kxp7lirx0pqhlibkd6f2wvgyhbmndrw308imkmzyqhgjz3"; depends=[mvtnorm]; }; rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; rebus_base = derive2 { name="rebus.base"; version="0.0-3"; sha256="1n2khszcya9k6379bdkq47xi2nw9jngiwj7z8a14wfswqydczv6y"; depends=[]; }; rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; @@ -10245,45 +10397,45 @@ in with self; { rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; - recipes = derive2 { name="recipes"; version="0.1.2"; sha256="1car3a3mqn87pz049cbgkaayz86970mvkapk6al2k7jjw76306l9"; depends=[broom ddalpha dimRed dplyr gower ipred lubridate magrittr Matrix purrr RcppRoll rlang tibble tidyselect timeDate]; }; + recipes = derive2 { name="recipes"; version="0.1.3"; sha256="1vqh3pxs4n1azhnd1lzg91vasya6g323kllhbrw177j7kdxqyimy"; depends=[broom ddalpha dimRed dplyr gower ipred lubridate magrittr Matrix pls purrr RcppRoll rlang tibble tidyr tidyselect timeDate]; }; + reclin = derive2 { name="reclin"; version="0.1.0"; sha256="1r88rk1yb19lhd1y69h016s26390cg5gnmxjjh143lynm3pbh0sv"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; - recmap = derive2 { name="recmap"; version="0.5.31"; sha256="1kgmqmpphz4p2zidl0l24nia49g8211dyk66wl09azay4vxm46nj"; depends=[GA Rcpp sp]; }; + recmap = derive2 { name="recmap"; version="0.5.33"; sha256="0znmsd7s25i2ildb4ysan10ih8s37rb8f794b6kp6cvy3zm81cbp"; depends=[GA Rcpp sp]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; recombinator = derive2 { name="recombinator"; version="1.0.0"; sha256="0amcpicsk270l9h7qgv764wp09phsffdpi4adcxrsrwiwm274ibw"; depends=[crayon]; }; - recommenderlab = derive2 { name="recommenderlab"; version="0.2-2"; sha256="13mgkxrcwh5ry699my3w6xgm6rabsk9fd5qqsdwzy7cfq6xkq7cg"; depends=[arules irlba Matrix proxy registry]; }; + recommenderlab = derive2 { name="recommenderlab"; version="0.2-3"; sha256="0lgfcwxy97cvi893k1dia3nng3yvclnmv95fszzmkcrf4qi9yy7q"; depends=[arules irlba Matrix proxy registry]; }; recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; reconstructr = derive2 { name="reconstructr"; version="2.0.0"; sha256="1pa6b8zns9495f1bdifvx19hsy5808hqbxb2bn1srwnr4s3ma1zi"; depends=[openssl Rcpp]; }; recosystem = derive2 { name="recosystem"; version="0.4.2"; sha256="1bn6l23gqmfpr6w60ph7zgv53vy3vnq9zdy5x0a8n1yp6b0lw48x"; depends=[Rcpp RcppProgress]; }; recurse = derive2 { name="recurse"; version="1.1.0"; sha256="1zgzzhbvdzqgmgzj43yvpyc7ahbkn96l5wyr1iqpnn3ha78fy0p3"; depends=[Rcpp]; }; - red = derive2 { name="red"; version="1.3.3"; sha256="0f4lriwlsq65z0sqjv4csrkbcjjvpybqf68rgx92ypkdjf57ixrs"; depends=[BAT dismo geosphere jsonlite maptools raster rgdal rgeos sp]; }; + red = derive2 { name="red"; version="1.4.0"; sha256="1z8ja8qbwgpbmy4ira9q6x482nw5rm4bksm82y0vc4gwpdxls5z3"; depends=[BAT dismo geosphere jsonlite maptools raster rgdal rgeos sp]; }; redR = derive2 { name="redR"; version="1.0.0"; sha256="01safawd9ai34fqxjpc161yzpsk31hfyl8ybcfvdj7a9vdbvcb5i"; depends=[imager]; }; reda = derive2 { name="reda"; version="0.4.1"; sha256="0aq6c2h694kdmjis12g4nxq5hdlzsi42nbnpzq7wic305l5r7nxl"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; - redcapAPI = derive2 { name="redcapAPI"; version="2.0"; sha256="1n4kwmd0kgmnx2zcgvrz2dlkxmv6wflyj4pll00qvpb1njgnq1xv"; depends=[checkmate chron DBI httr labelVector lubridate stringr tidyr]; }; + redcapAPI = derive2 { name="redcapAPI"; version="2.1"; sha256="1xdhjr970cg7sr014rviznwg27d2rahc9nfj44b3fghv8jzfc272"; depends=[checkmate chron DBI httr labelVector lubridate stringr tidyr]; }; reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; redist = derive2 { name="redist"; version="1.3-1"; sha256="0rivfi3jpjvhd36rkhlazx4vr7wsig9lf3im1masjmzd4s00zrd8"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; }; redland = derive2 { name="redland"; version="1.0.17-9"; sha256="01jx6r7zznb6cpi2bx36fpsgig3bkc1nv9afz5s2nfqisxiq48w5"; depends=[roxygen2]; }; - redlistr = derive2 { name="redlistr"; version="1.0.0"; sha256="0v2j8fkq8p2g071fkimlhn0ydba1h70rs48p2sy2hsbicj9qsd4z"; depends=[plyr raster rgdal rgeos sp]; }; - redux = derive2 { name="redux"; version="1.0.0"; sha256="0p2hn7pphsfl6lyh1l8a8pp4frgfrfv2fxgkisyam331i7ns3r4h"; depends=[R6]; }; - ref = derive2 { name="ref"; version="0.99"; sha256="0f0yz08pqpg57mcm7rh4g0rbvlcvs5fbpjkfrq7fmj850z1ixvw0"; depends=[]; }; + redlistr = derive2 { name="redlistr"; version="1.0.1"; sha256="07zg0yzrcamaag5xcn33mh8i099r2gyz5p47f38lsg33j7am0m8n"; depends=[plyr raster rgeos sp]; }; + redux = derive2 { name="redux"; version="1.1.0"; sha256="0a551w7fph338mqzxda6y21lsad19dway7w18jw9cv1rgvcp9nvc"; depends=[R6 storr]; }; refGenome = derive2 { name="refGenome"; version="1.7.3"; sha256="15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"; depends=[DBI doBy RSQLite]; }; referenceIntervals = derive2 { name="referenceIntervals"; version="1.1.1"; sha256="04199nxh216msaghkp66zsi96h76a7c42ldml0fm66v2vamcslg8"; depends=[boot car extremevalues outliers]; }; refimpact = derive2 { name="refimpact"; version="1.0.0"; sha256="0qifqhar2pv81npsxl2pj713vgldyap7y79fq20jpk7qigzf9573"; depends=[checkmate curl httr jsonlite tibble xml2]; }; - refinr = derive2 { name="refinr"; version="0.2.0"; sha256="0dwmqq0wigbzk7vv0ddd066pmwf1sd7rid4nhmsxajv21aghqc3i"; depends=[Rcpp stringdist]; }; + refinr = derive2 { name="refinr"; version="0.3.1"; sha256="0q76sr050pg3ahwzcxj08mjig0k2jq8yh7nv6d914pwg3dhq05sn"; depends=[Rcpp stringdist stringi]; }; refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; }; refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; }; - refund = derive2 { name="refund"; version="0.1-16"; sha256="0npq12bf3qmcbgwdxilwvzvf5x2m3qrxljlsx1sz9xczms2dz7kg"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; + refuge = derive2 { name="refuge"; version="0.1.1"; sha256="1l9zbhx93f3ib978hlfvkczpy7c88g7ymwiq8grkycfzz52bfz0b"; depends=[dplyr httr jsonlite tibble]; }; + refund = derive2 { name="refund"; version="0.1-17"; sha256="1lz90y3zim0vl2gxiy4zw0qhkvg7i0p64jqabblnlx13f3lzn944"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; refund_shiny = derive2 { name="refund.shiny"; version="0.3.0"; sha256="0r2xrm4wz35wn9zg4vvw2ysl7zzbz9i080vnbrlp4yrhhlkhpkm1"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund reshape2 shiny tidyr]; }; refund_wave = derive2 { name="refund.wave"; version="0.1"; sha256="1vnhg7gi5r8scwivqjwhrv72sq8asnm4whx3jk39saphdxpk5hxv"; depends=[glmnet wavethresh]; }; regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; regclass = derive2 { name="regclass"; version="1.5"; sha256="0kha9b5ki55ggwh8cmlphg1alf1dq8if5dknisfbvd3f2x4dqf02"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; - regexr = derive2 { name="regexr"; version="1.1.0"; sha256="1gjv4wl4gjsh5rr0kz057x9j4dhikrm3zzlmxlhd1f9srjdmcdzy"; depends=[]; }; reghelper = derive2 { name="reghelper"; version="0.3.3"; sha256="0lsdsxi3nawqdzs7k1xma95mmywl86k517cihiv8q2s4maihsja3"; depends=[ggplot2 lme4 nlme]; }; registry = derive2 { name="registry"; version="0.5"; sha256="1yqfl1g6vsl28zn8brzc39659k8lqsmfms7900j7p64ilydyb2sx"; depends=[]; }; reglogit = derive2 { name="reglogit"; version="1.2-5"; sha256="123l9n3m2v16skhj0rf77swlhy0ii6ridz13pp68hrxb72sr243c"; depends=[boot Matrix mvtnorm]; }; - regnet = derive2 { name="regnet"; version="0.2.0"; sha256="1c7l2wmb5143ly53griy87c40xr8shxfk54kvf36grjxs7grl7pd"; depends=[glmnet Rcpp RcppArmadillo]; }; + regnet = derive2 { name="regnet"; version="0.3.0"; sha256="1jqy3zkxn3jms9fm950h1bvhvassbfa5yrl7222z3wa0w66kxpp0"; depends=[glmnet Rcpp RcppArmadillo]; }; regplot = derive2 { name="regplot"; version="0.1"; sha256="1jw93pplg6qdrfv9jhnifkhclxzrhg84zs8gkfl0nb40jxb6pc34"; depends=[beanplot sm survival vioplot]; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; regress = derive2 { name="regress"; version="1.3-15"; sha256="1cgr0r49cmr8nzs2lr2cm8lli1i8azyas0lbnf1681kyab15c0r7"; depends=[]; }; @@ -10305,8 +10457,7 @@ in with self; { relabeLoadings = derive2 { name="relabeLoadings"; version="1.0"; sha256="16gxdrhkaaa33hypnsacn4vd1g3lbqdl3j8p8va54v777c561g81"; depends=[]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-3"; sha256="0pbffalyhmfigyynkl6il60dyyf2aw1i71sncwrqcp18qgx4bxq9"; depends=[boot corpcor MASS mitools survey]; }; relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; - relations = derive2 { name="relations"; version="0.6-7"; sha256="1c16sb4v5n44nichwizilqs491rddn8kpf8qrqw54khj5zzg6w52"; depends=[cluster sets slam]; }; - relax = derive2 { name="relax"; version="1.3.15"; sha256="0cgvxw3pmy9kx8p81bb5n5nnbn6l9hm07k6hdy7p2j2gl15xxnpq"; depends=[]; }; + relations = derive2 { name="relations"; version="0.6-8"; sha256="0zld95ak07g3gqgjq80p18sww2ib5xg45idrvhxjvn19wddy87vz"; depends=[cluster sets slam]; }; relaxnet = derive2 { name="relaxnet"; version="0.3-2"; sha256="1l83rk7r4vkcxbfljmibzm8lzpx0vf406hv4h5cy9x0k3rz2bfh0"; depends=[glmnet]; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; reldist = derive2 { name="reldist"; version="1.6-6"; sha256="09vips7spcz0fahrpy0bl15hk43zgnq74h189hmygyi41l95aywa"; depends=[Hmisc mgcv]; }; @@ -10323,28 +10474,29 @@ in with self; { remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; }; remotes = derive2 { name="remotes"; version="1.1.1"; sha256="07sxlwd09jzlfn7xakw9hwkr9k970lw2mnl0l3rpb5w71968km98"; depends=[]; }; + renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.1"; sha256="115ffrmsg755ynfwywql7xkcnlvv8ch4nlr1ab11i5923fz6vkvl"; depends=[httr jsonlite XML]; }; repeated = derive2 { name="repeated"; version="1.1.0"; sha256="0cdyzhhv89186q5nwablcjbqvm7ncq2w5d09iidbajrac9wd1y60"; depends=[rmutil]; }; repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; repijson = derive2 { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-2"; sha256="0nskwkqm9z2aphpim6pvykhc3fphlsbap3r49nghkwjpngd0qzj8"; depends=[spatstat spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; - replyr = derive2 { name="replyr"; version="0.9.4"; sha256="1f8y2ywv7wf15g76949934r2qq2bp75ayfvrcb654q9pf2h5w39v"; depends=[DBI dplyr wrapr]; }; + replyr = derive2 { name="replyr"; version="0.9.6"; sha256="1ffx8ziiiqpixabypk4lwnzvnrrylfl40rrjq4c3ys83gnbjm5n2"; depends=[DBI dplyr rlang wrapr]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; - repo = derive2 { name="repo"; version="2.1.2"; sha256="14a7lw1rvn7n7caz3p3y69n9wqw48qsxsjs5kwvpbwsmap7bjj7l"; depends=[digest]; }; + repo = derive2 { name="repo"; version="2.1.3"; sha256="1g72zvj2mg8cxfy1w3d46lkk4hayad64ns5w1y43731whzraxk95"; depends=[digest]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; reportROC = derive2 { name="reportROC"; version="3.0"; sha256="0jq3y1mia7nsnab14axyrvafw2b64g2zq25n42zplvm4pyfh1czr"; depends=[pROC]; }; - reportReg = derive2 { name="reportReg"; version="0.1.0"; sha256="1xnrc7c73d5gwz6381z2nikg7jy1sygm6iw6raah8yrdzv5d816d"; depends=[]; }; + reportReg = derive2 { name="reportReg"; version="0.2.0"; sha256="063z2szsainld9yb0hmpw23ij4d52qs6zjvdfdzj9h48qd50h38d"; depends=[nlme]; }; reportRx = derive2 { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; }; reportr = derive2 { name="reportr"; version="1.2.2"; sha256="1fl4hy4ck4aapy152vn9gjd7w5vgvh2gz2ky6p0wwahah7m9b255"; depends=[ore]; }; reports = derive2 { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; }; reporttools = derive2 { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; }; - repr = derive2 { name="repr"; version="0.13"; sha256="0k5796r5z9yr8s1hlx30x4cy1ix4fc85m0lwqf9zdapcvw0iqgld"; depends=[base64enc htmltools]; }; + repr = derive2 { name="repr"; version="0.15.0"; sha256="0myg8d9idpp0gbi7nmcrjq3fa0zy4v73hkg6g5zlpw5vhsmvi8h0"; depends=[base64enc htmltools]; }; represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; represtools = derive2 { name="represtools"; version="0.1.2"; sha256="1zkabch49q23kd1786km5cb9wcaccbxds11v9hwjzsgrs15g5w35"; depends=[whisker]; }; - reprex = derive2 { name="reprex"; version="0.1.2"; sha256="105d9vsmqfilgpw8psfb2wyiz1hvcycvh4cqhb3ab37lm3rcavvs"; depends=[callr knitr rmarkdown whisker]; }; + reprex = derive2 { name="reprex"; version="0.2.0"; sha256="1l44pxjiz3g0jkk3v6rg5jps3llihfiah0qyv40s0bxvxa6gm8v9"; depends=[callr clipr rlang rmarkdown whisker withr]; }; reproducer = derive2 { name="reproducer"; version="0.1.9"; sha256="092gz58sanpawgg0jk1634x9ki0jw460csbb6cywp0ndghswfgwh"; depends=[ggplot2 gridExtra lme4 MASS metafor openxlsx xtable]; }; - reproducible = derive2 { name="reproducible"; version="0.1.4"; sha256="1z14hpinlykj1y1xf2qhfdabyfvfywrkzbyfjv3vhw8lvvkwajlw"; depends=[archivist crayon data_table devtools digest fastdigest git2r magrittr memoise raster Rcpp RCurl sp versions]; }; + reproducible = derive2 { name="reproducible"; version="0.2.0"; sha256="0qaf9sx270hv73vggkschfwqvg39bmjvnz8wywvia722l3bjkh34"; depends=[archivist crayon data_table devtools digest dplyr fastdigest fasterize gdalUtils git2r googledrive httr magrittr memoise quickPlot R_utils raster Rcpp RCurl rgdal rgeos sf sp versions]; }; repurrrsive = derive2 { name="repurrrsive"; version="0.1.0"; sha256="1ffldcs30xa4wcd825bgpcmqsndfyxx70dfmbb3c86ic9kq17p01"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.1"; sha256="056cjdx0nmf32vma2jkpbaznbaf76kc4jn0w6nv7blq33qlvx37z"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; @@ -10366,43 +10518,42 @@ in with self; { restriktor = derive2 { name="restriktor"; version="0.1-80.711"; sha256="10kbfr7gzah119xm4cnx7br9i9fcga38kymjajw7m2571f4jsji9"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.3"; sha256="0ilya3v75989zqm16x69w4599ax2s5j2n6f16bmhwydrmzxs1g48"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; }; - reticulate = derive2 { name="reticulate"; version="1.6"; sha256="036jiwxfvxkkijpilpbzlndm4bg4nd8gx8gxx4dl4zj263gd398m"; depends=[jsonlite Rcpp]; }; + reticulate = derive2 { name="reticulate"; version="1.8"; sha256="0zwb4ikf021nw7axdn7qlr6bq4xkph3anfy314idkspy1iil4nmr"; depends=[jsonlite Matrix Rcpp]; }; retimes = derive2 { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; retistruct = derive2 { name="retistruct"; version="0.5.12"; sha256="11m4i29i3zqh9chyjgdhzqj4yqlslfm8y4q0x14xxc2r9lqbkj9l"; depends=[foreign geometry png R_matlab rgl RImageJROI RTriangle sp ttutils]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; }; revdbayes = derive2 { name="revdbayes"; version="1.3.2"; sha256="09xxy3yk2fwd0113dgsz0kd2k1k1ghjv9ay2n03b5cnxqaksa99s"; depends=[bayesplot Rcpp RcppArmadillo rust zoo]; }; - revealedPrefs = derive2 { name="revealedPrefs"; version="0.2"; sha256="1f871y4wkjznzgwxfbnmrfiafq43cyf0i5hjy68ybxc7bbvfryxc"; depends=[Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; revengc = derive2 { name="revengc"; version="1.0.0"; sha256="0ccbw61xqjf9y15ghhzx57q3l48xpw9pq2nb11nrqapp5w3f9vzy"; depends=[stringr]; }; revgeo = derive2 { name="revgeo"; version="0.15"; sha256="1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55"; depends=[RCurl RJSONIO]; }; revtools = derive2 { name="revtools"; version="0.2.2"; sha256="0sn7k5vcp09vp6j1bf879jrig382ayhfnwp569z9dxgdh7s18v6n"; depends=[ade4 modeltools plotly shiny shinydashboard SnowballC stringdist tm topicmodels viridisLite]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rex = derive2 { name="rex"; version="1.1.2"; sha256="0alsadgjgass3wr8y5d247j12qqzg454sc84vpskclrkmz778g5x"; depends=[lazyeval magrittr]; }; - rexpokit = derive2 { name="rexpokit"; version="0.26.2"; sha256="0jydx3rlsbdn74gx2is1x6gsb4b64wqbc5jw2sb4xflvvhxfci67"; depends=[Rcpp]; }; + rexpokit = derive2 { name="rexpokit"; version="0.26.3"; sha256="0af9h7p4gx627iin3l8hbwhkf7yfdrr900a1rq8ib9p4ip7inxmd"; depends=[Rcpp]; }; rfPermute = derive2 { name="rfPermute"; version="2.1.5"; sha256="0c7yi395j640mvnr1qlm9hy1w6vva33fa2lqb3amzkafy4j1cs63"; depends=[abind ggplot2 gridExtra randomForest reshape2 swfscMisc]; }; rfUtilities = derive2 { name="rfUtilities"; version="2.1-3"; sha256="0vnhvdkqqqn894abznw97j07gwdvvmvk8vsf4aaxx9yzk44cnk5g"; depends=[cluster randomForest]; }; + rfbCNPJ = derive2 { name="rfbCNPJ"; version="0.1.1"; sha256="0zvpazxi184ia2wql0120kw7665dn9cs8a2kv91n79pncabb4xfg"; depends=[fs glue httr magrittr progress purrr readr stringr tibble xml2]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; rfishbase = derive2 { name="rfishbase"; version="2.1.2"; sha256="1w8jk6qfhyzzmxf8qnqqwckm4syrqimi8k6dqmwflgxz6bsxcz0v"; depends=[dplyr httr lazyeval tidyr]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; - rflann = derive2 { name="rflann"; version="1.3"; sha256="1y8m52vlrcl69srssd23zgg90yfhh9rryd16hk1dnqg713qhksgm"; depends=[Rcpp RcppArmadillo]; }; rfm = derive2 { name="rfm"; version="0.1.0"; sha256="0bd71qk6vrd0jnnwdwlh30mn8v8dwwgmffrd71kbq83gbfp8ry3l"; depends=[assertthat dplyr forcats ggplot2 lubridate magrittr purrr RColorBrewer rlang shiny tidyr]; }; rfml = derive2 { name="rfml"; version="0.1.0"; sha256="133adpfjpp14m47841k6ybq9lrvby9bxgr5zs4i3akjr2575nq1j"; depends=[httr jsonlite PKI XML]; }; rfoaas = derive2 { name="rfoaas"; version="1.1.1"; sha256="1rglqmbhnasc3ciypms3qqgfaj19202cnqdimsi69lvig2rnkca5"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.3"; sha256="13jqvww65wzac1c8ajkljz89vi4j76y9ga52w3ygajjzg0rn15l5"; depends=[]; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; }; rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; - rgam = derive2 { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp RcppArmadillo]; }; - rgbif = derive2 { name="rgbif"; version="0.9.9"; sha256="11gji0b1gzh3zpmaff7ly9pvv6jdig5d1277hrss8x4zj7r34iap"; depends=[crul data_table geoaxe ggplot2 jsonlite magrittr oai tibble whisker wicket xml2]; }; + rgam = derive2 { name="rgam"; version="0.6.6"; sha256="0klf2prw5zj76az66c5hzv23yya1b45l61xdy1zbnggvwh62fqik"; depends=[Rcpp RcppArmadillo]; }; + rgbif = derive2 { name="rgbif"; version="1.0.0"; sha256="1bjapaxp84rm8p7qp3w814b80h2s2m9zpnah85xyg27ba26jixnz"; depends=[crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai tibble whisker wicket xml2]; }; rgcvpack = derive2 { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; - rgdal = derive2 { name="rgdal"; version="1.2-18"; sha256="0vyvbsz7260crfnqk61vcbk051d01lyl984yk140nwh9wj8svr1d"; depends=[sp]; }; - rgdax = derive2 { name="rgdax"; version="0.5.0"; sha256="1s9vqjmnkd4jvq5v8w1wc44khgd1pjzr2hq356vm0jpcvgf0qscq"; depends=[digest httr jsonlite RCurl]; }; + rgdal = derive2 { name="rgdal"; version="1.3-3"; sha256="06dvybwz6rgnqhkc05jgi1j9j0bc8hnwrsz5gs1p3xkbxk9fvr0z"; depends=[sp]; }; + rgdax = derive2 { name="rgdax"; version="0.6.0"; sha256="0kls1v9i3fhiyfns41nqqyz4spf5449hc624vwdw86sgbc1w30w8"; depends=[digest httr jsonlite RCurl]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; - rgenoud = derive2 { name="rgenoud"; version="5.8-1.0"; sha256="12n34r0p00bmflxrmbj927jm0q19j5r9mjplz5mzb1v8praa7v4x"; depends=[]; }; + rgenoud = derive2 { name="rgenoud"; version="5.8-2.0"; sha256="0ffjw8kqmi0zkbskyw3h38a8iapv7hdi9819x5w9a5gmdmm4yv0h"; depends=[]; }; rgeoapi = derive2 { name="rgeoapi"; version="1.1.0"; sha256="0k8p1l0vrgx0bifbc2i9gxxwih513vbqhjh7fiifyfq3r74i4j7k"; depends=[httr magrittr rjson]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.0.1"; sha256="1v9kd71wpxna1war0rbp91pc5wdqlganmj2c2fc5m5176dnxd2v3"; depends=[httr Rcpp]; }; - rgeopat2 = derive2 { name="rgeopat2"; version="0.2.4"; sha256="1ngisbx9ws8zllkq2qa7zafl400wrvmj3rm812aja74d8rr2i7mw"; depends=[readr sf stringr]; }; - rgeos = derive2 { name="rgeos"; version="0.3-26"; sha256="0czlwfqilzh1zj61axisg06d9dksdvvg5hgcs31ydaqkh45llllq"; depends=[sp]; }; + rgeopat2 = derive2 { name="rgeopat2"; version="0.2.5"; sha256="1zdjnbdxj6yfmb5dl4ajlcklgh0iw17ji3arl0wf9j61pw45kk17"; depends=[readr sf stringr]; }; + rgeos = derive2 { name="rgeos"; version="0.3-28"; sha256="1dfbphf5g4ggd109j7qh4cycxgslppnja8d4ibwajkfgd3f6iq0q"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; }; rggobi = derive2 { name="rggobi"; version="2.1.21"; sha256="0zi4rhggngm0y8dsjxqlr2mmfc5wzi7l1qcp5gin4bjlbyf8yb3z"; depends=[RGtk2]; }; rgho = derive2 { name="rgho"; version="1.0.1"; sha256="0jkfmyn3i50vsqciy96wd2fpik6yfg0sz6rrhwb04jv1dmyz2nfa"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr tibble tidyr]; }; @@ -10429,6 +10580,7 @@ in with self; { riem = derive2 { name="riem"; version="0.1.1"; sha256="0lwhsxb4pm26kb65hs8pa63bsbrgy0zchqm4i6pq9f2r9h8vsm1m"; depends=[httr jsonlite lubridate tibble]; }; rif = derive2 { name="rif"; version="0.2.0"; sha256="0vk3dmg3qzw3i27wbpfih66rx8sdxq033l7h59h3hy960av4hawh"; depends=[crul data_table jsonlite tibble]; }; riingo = derive2 { name="riingo"; version="0.1.0"; sha256="1lkg0xmy3mhx99ywbvkmnkj6i61r5x75g4fnnwj6vdyslvwf3s5x"; depends=[crayon glue httr jsonlite purrr rlang tibble]; }; + rijkspalette = derive2 { name="rijkspalette"; version="1.0.0"; sha256="15yn4sp4p4gcm94clyrijp5mxiz2xcslsq2a8x5x2la1l91kf70i"; depends=[crayon curl imager jsonlite]; }; rinat = derive2 { name="rinat"; version="0.1.5"; sha256="14ql90f8wrxz9nlykbzfpar1yfwh7p71vks7vhhn8ys09wvj30zk"; depends=[ggplot2 httr jsonlite maps plyr]; }; rindex = derive2 { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; }; ring = derive2 { name="ring"; version="1.0.0"; sha256="03sbgxwzms20gp0hkm5s0dihqkx3qf6bw0jrays7jjzrrwzl5657"; depends=[R6]; }; @@ -10442,8 +10594,8 @@ in with self; { risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; riskyr = derive2 { name="riskyr"; version="0.1.0"; sha256="1s6yrij5d1vhvzc7nnajjnjmxnhrs0r1psppcvwb0qg3ff181y22"; depends=[diagram vcd]; }; rite = derive2 { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[knitr markdown RCurl tcltk2]; }; - ritis = derive2 { name="ritis"; version="0.7.0"; sha256="0f2xhxz8aqq1bhz6pwcdlfpchlvrnpgyh926hzfyg0rhz11k4fmv"; depends=[crul data_table jsonlite solrium tibble]; }; - riv = derive2 { name="riv"; version="2.0-4"; sha256="1c9k62plqgxcgcm2j1s26hqvgww96n6bfjz2yk7m3p2wf8gkkyam"; depends=[MASS quantreg rrcov]; }; + ritis = derive2 { name="ritis"; version="0.7.2"; sha256="1bn7nfgg9f2y19fp747k96r9kmnrfsqib81a9rzbwv4b97ymg31s"; depends=[crul data_table jsonlite solrium tibble]; }; + riv = derive2 { name="riv"; version="2.0-5"; sha256="0n19jlrs12iysq45xyi3zvghkircg0ww5vbsfpnqkw5b22zsv30s"; depends=[MASS quantreg rrcov]; }; riverdist = derive2 { name="riverdist"; version="0.15.0"; sha256="145mvqnhv12dcvss54wdycgb3wwk95phl4kx5z0jnh3kmm1zsdl4"; depends=[rgdal sp]; }; rivernet = derive2 { name="rivernet"; version="1.1"; sha256="1brdgm2fbdq4qw85va6isj7p9bva4sj3spgsx8nsqvc8vaa90y4p"; depends=[]; }; riverplot = derive2 { name="riverplot"; version="0.6"; sha256="0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z"; depends=[]; }; @@ -10453,7 +10605,8 @@ in with self; { rjags = derive2 { name="rjags"; version="4-6"; sha256="1bc9bzq31liawg3nzwfczf75vgg56fnqjw0997xvlic4ghgbn96g"; depends=[coda]; }; rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; }; rje = derive2 { name="rje"; version="1.9"; sha256="1dyd34z6lb0p6zmyax5dpzflgc9a4saka33mvdfcxi5pj0rnygaz"; depends=[]; }; - rjson = derive2 { name="rjson"; version="0.2.15"; sha256="1vzjyvf57k1fjizlk28rby65y5lsww5qnfvgnhln74qwda7hvl3p"; depends=[]; }; + rjmcmc = derive2 { name="rjmcmc"; version="0.4.1"; sha256="0ww94zdrxdyznpsfxy5fr65w1qjxxr5zignj4bw4291694vfazw1"; depends=[coda madness mvtnorm]; }; + rjson = derive2 { name="rjson"; version="0.2.20"; sha256="0v1zvdd3svnavklh7y5xbwrrkbvx6053r4c5hgnk7hz7bqg7qa1s"; depends=[]; }; rjsonapi = derive2 { name="rjsonapi"; version="0.1.0"; sha256="0qshll0y8b6lbfrqmp69w9kc9hgfrz94dk68nddshk9ilg14lx4d"; depends=[crul jsonlite plumber R6]; }; rjstat = derive2 { name="rjstat"; version="0.3.0"; sha256="0r772p0a0x6g96k6r26vb6vjxa68mzjslwg71r0wysa9kqhvypm4"; depends=[checkmate jsonlite]; }; rkafka = derive2 { name="rkafka"; version="1.1"; sha256="0c0hszsmmd876jcfamjcfb7bxw7869zgy99j4i6ksb8za232nmmw"; depends=[rJava rkafkajars RUnit]; }; @@ -10461,25 +10614,25 @@ in with self; { rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive2 { name="rkt"; version="1.5"; sha256="1rgf7dnk4d1b46rns2mb2s1ilxq7hqrh057vrrl00324r4h8bs1k"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlang = derive2 { name="rlang"; version="0.2.0"; sha256="0f87fhw5pj6s2zjdxnpnd7pwn78czdz71b0xhm5adqg1p38sfwj8"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.2.1"; sha256="0mqs7vd4855hdjymvp6427vhs2ihaz37lx59984x39rc7sfw6nap"; depends=[data_table Rcpp uuid]; }; + rlang = derive2 { name="rlang"; version="0.2.1"; sha256="0ghg66vyri8nck4p6kl1nh47qdppbmxvjiyms69nhvipphk4ifpj"; depends=[]; }; + rlas = derive2 { name="rlas"; version="1.2.4"; sha256="12siq75a4dwyfypyrz8550wj6xjjwfs99kxaglx39c8wc0z64wmy"; depends=[data_table Rcpp uuid]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-4"; sha256="0d5mcdzn6f5nhwzs165a24z36d0b8gd0cyfyzffvr6p96h8qydy7"; depends=[]; }; - rlfsm = derive2 { name="rlfsm"; version="0.1.0"; sha256="1ixffrn56s9hg56ygk8882kz4b77sfdd9xb5vnk8b10sl9yjh4r7"; depends=[doParallel elliptic foreach ggplot2 plyr Rdpack reshape2 stabledist]; }; + rlfsm = derive2 { name="rlfsm"; version="0.2.0"; sha256="08fdllzk5q77fz6ii83vbmz8dnfwwr3ixs11ia2l1vrm1gdj9gf7"; depends=[doParallel elliptic foreach ggplot2 plyr Rdpack reshape2 stabledist]; }; rlist = derive2 { name="rlist"; version="0.4.6.1"; sha256="08awy2p7rykc272wvvya4ddszbr7b7s7qv4wr3hs8ylr4jqlh0dv"; depends=[data_table jsonlite XML yaml]; }; rlm = derive2 { name="rlm"; version="1.2"; sha256="18y735z05k9pms6iv1739qg3q12w099qhs42icxhqs5gcdhz92fm"; depends=[]; }; rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; rlo = derive2 { name="rlo"; version="0.3.2"; sha256="0abq42dhapzmh6hvmildbn8zya29c6p1aqbv8avc03g014dwbrd0"; depends=[PythonInR]; }; - rly = derive2 { name="rly"; version="1.5"; sha256="0rd4ksd6qv227zgdxmy9d77v1jyba0vk0svh5wc5b72z92j9cjzb"; depends=[futile_logger R6]; }; + rly = derive2 { name="rly"; version="1.6.1"; sha256="13l1ya0f8mbpwainzs1rbl9zjhf3wxrcfkf0xnj9wybs34k9qzxj"; depends=[futile_logger R6]; }; rma_exact = derive2 { name="rma.exact"; version="0.1.0"; sha256="1igs92la79akyqj84ah23lpcay7i33k7zgzcwm7sii782fhirivx"; depends=[abind metafor]; }; rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; }; rmake = derive2 { name="rmake"; version="1.0.0"; sha256="1qvbyd68p37nsqrm77w18znsa6m629qzyd7sl8w98p654pqmjhdw"; depends=[assertthat pryr rmarkdown]; }; rmapshaper = derive2 { name="rmapshaper"; version="0.4.0"; sha256="0a911f6q9czni6zpijp63rngnil7jkbcy9f7jz55jr225fgm6g6z"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; - rmapzen = derive2 { name="rmapzen"; version="0.3.4"; sha256="1hpl2j347d5qahwzxlr66k2fl6fg09160jn6p3ycvhp0g7zaq5r4"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; - rmarkdown = derive2 { name="rmarkdown"; version="1.9"; sha256="0wq6kbhrkv3fhcy4hg5yyv9gdvf8gr4nsjwdifs4ih8lnn0dmdyb"; depends=[base64enc evaluate htmltools jsonlite knitr mime rprojroot stringr yaml]; }; + rmapzen = derive2 { name="rmapzen"; version="0.3.5"; sha256="0n549y6j056cl7c7pdcn9pixhvs8vpwqg50m380pchbxhxnfjvbq"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; + rmarkdown = derive2 { name="rmarkdown"; version="1.10"; sha256="0mh2f3k98w7pgz0ri34149s4kx5y0kfm27nwq64k0qwxd16hwd9r"; depends=[base64enc evaluate htmltools jsonlite knitr mime rprojroot stringr tinytex yaml]; }; rmatio = derive2 { name="rmatio"; version="0.12.0"; sha256="1cw7j44rgjgbw2xln7lh29ln53lwfadr8rx0sffkjwc7lbh1r6wa"; depends=[Matrix]; }; - rmcfs = derive2 { name="rmcfs"; version="1.2.10"; sha256="0gyvb8vdv1n93xbz0xl5vhwhskas8cxj4zv8flz18jm6f0bgqlrr"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; + rmcfs = derive2 { name="rmcfs"; version="1.2.11"; sha256="0pzkxhgn4qcynv0rqbisld7hkpmx8aarxwc165bpipw2z11krdqj"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.3.0"; sha256="1p05ln653yrd02wmn8wfzawiw6a924d8an0568fcbgl1pdna43b1"; depends=[psych RColorBrewer]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; rmda = derive2 { name="rmda"; version="1.5"; sha256="13119x23xi912s7wl2p2a24msbczgv75x37p2jsr5w0n4l2k01wi"; depends=[caret MASS pander reshape]; }; @@ -10489,16 +10642,15 @@ in with self; { rmetasim = derive2 { name="rmetasim"; version="3.1.7"; sha256="0sz4mdprdi6sgkfwfdvh2hr9nxiwq17sw0vggq3cvs7lzb0i6m9r"; depends=[ade4 adegenet gtools pegas]; }; rmgarch = derive2 { name="rmgarch"; version="1.3-0"; sha256="0brqjhplvzl0bgsi6x057rb2cg5x372i746dhddr013p1mx0rlcx"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; rminer = derive2 { name="rminer"; version="1.4.2"; sha256="1hjgcawjrwsf0nv2hlznr1cvpm445yyxc6cq28k2yzyivk74si34"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; - rmngb = derive2 { name="rmngb"; version="0.6-1"; sha256="1wyq8jvzqpy1s6w0j77ngh5x2q7mpj0ib01m8mla20w6yr6xbqjk"; depends=[Hmisc]; }; rmonad = derive2 { name="rmonad"; version="0.5.0"; sha256="0m7hhmn87rfh49hxrjlcxcq6q36niyxlh3w2frld68jkbks71jn5"; depends=[digest glue igraph magrittr pryr]; }; - rmp = derive2 { name="rmp"; version="2.0"; sha256="1cs5ylh5z9mfj3r0yvxxd38ksna2dxk9nnfgqkry1kxibnd1b4ff"; depends=[]; }; rmpw = derive2 { name="rmpw"; version="0.0.3"; sha256="1iidiq0pz88wgh155hfy8mw0cwwwcl77zshcjrbw11zpx6p8qy94"; depends=[gtools MASS]; }; rms = derive2 { name="rms"; version="5.1-2"; sha256="01wjxlqfz6l1bdsvxqq0lsbps0k86hx3ayb6fl2n2hxccvsfxkzi"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; rmsfuns = derive2 { name="rmsfuns"; version="0.0.0.2"; sha256="0by2d6l25lf5vidxbkcxghpxycffyldzzbxcw6h4rm86zmkkv1m0"; depends=[magrittr purrr readr tidyverse xts zoo]; }; rmumps = derive2 { name="rmumps"; version="5.1.2-4"; sha256="1qdpvyxwb18dapa8xqj8kjjmrnrqixkn29qn6q4cnwdwi1zcbdx6"; depends=[Rcpp]; }; - rmutil = derive2 { name="rmutil"; version="1.1.0"; sha256="0f30afqbzrsgbnfpniwhbw4b8hlzc5zyaixvn9giggzwczfnf29k"; depends=[]; }; + rmutil = derive2 { name="rmutil"; version="1.1.1"; sha256="0yyzypkz6jjqvhafg6ipml8hrhr0w9l6j2vnmf0gdy90xj78mgag"; depends=[]; }; + rmweather = derive2 { name="rmweather"; version="0.1.1"; sha256="0p9fdvkdyicbyngsg53vf56fbc3q7yxs2m7iisd1hpaz09gazqlm"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange testthat tibble viridis]; }; rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; @@ -10507,21 +10659,22 @@ in with self; { rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; rngWELL = derive2 { name="rngWELL"; version="0.10-5"; sha256="0b4ys525gksgqwqx9id4bdgyi9mwj6n3r87xdzf4fc9hp3cc16jb"; depends=[]; }; - rngtools = derive2 { name="rngtools"; version="1.2.4"; sha256="1fcgfqrrb48z37xgy8sffx91p9irp39yqzxv7nqp1x2hnwsrh097"; depends=[digest pkgmaker stringr]; }; + rngtools = derive2 { name="rngtools"; version="1.3.1"; sha256="097215qcfw6ybllpzmp1532r59h2srvch3aca4z4s6l2rf9w8gvn"; depends=[digest pkgmaker stringr]; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; - rnn = derive2 { name="rnn"; version="0.8.0"; sha256="04924zn448x9rc3z9vh033l4rv9lz0hxv1bhfl0gn6gvd5wavlc7"; depends=[shiny sigmoid]; }; + rnn = derive2 { name="rnn"; version="0.8.1"; sha256="0g2c87x939x5gh1h6np0fbyrg5w2zk2ydw8r0yaq2zj3z5yc5mlc"; depends=[shiny sigmoid]; }; rnoaa = derive2 { name="rnoaa"; version="0.7.0"; sha256="0mha1izbzfa6vq44wjsc4p018k83zw99f6bpkhc275c5v09pxvmr"; depends=[crul dplyr geonames ggplot2 gridExtra hoardr httr isdparser jsonlite lubridate rappdirs scales tibble tidyr XML xml2]; }; rnpn = derive2 { name="rnpn"; version="0.1.0"; sha256="10xx8fxgdknv71ks42xxvf38xsmjy6s87y67wi21673v0n07fxb5"; depends=[data_table httr jsonlite plyr]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="1.4.0"; sha256="007j6a2hihw7h0vhv6aiz7iymzr3lkzmc1dy5f8b22z5n52k4pl3"; depends=[ggmap ggplot2 httr plyr rgdal rjson sp stringr xml2 xts]; }; - roadoi = derive2 { name="roadoi"; version="0.4.1"; sha256="1g4x1gkcrq8pd5vdikhf16ghgd990hhb1m387r2smz21v993cfk8"; depends=[dplyr httr jsonlite miniUI plyr purrr shiny tibble tidyr]; }; - roahd = derive2 { name="roahd"; version="1.3"; sha256="1pn2xzc5fnp2hb3fw3gpqng0x9rvpd4qfhx9gclf31algpzaidbb"; depends=[robustbase scales]; }; - robCompositions = derive2 { name="robCompositions"; version="2.0.7"; sha256="1ym63s6rn02p42q4mwmxbnh713shs4sc2ayimi053yzix4cnwn7w"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp robustbase rrcov sROC VIM zCompositions]; }; + roadoi = derive2 { name="roadoi"; version="0.5.1"; sha256="139i0nhvmkx66f1k3vg5b59m0b12zd6abq38ggx15vshzs5q1f5w"; depends=[dplyr httr jsonlite miniUI plyr purrr shiny tibble tidyr]; }; + roahd = derive2 { name="roahd"; version="1.4"; sha256="1snbda40lxb0hyk87alljxclwv3lsjy8qm39ynq8299f1ra1l1lh"; depends=[dplyr magrittr robustbase scales]; }; + robCompositions = derive2 { name="robCompositions"; version="2.0.8"; sha256="0i7pjp0ir0n7j5r75ha5avsrqniji1zg7jb93nj9ji3qy286yyxw"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp robustbase rrcov sROC VIM zCompositions]; }; + robcbi = derive2 { name="robcbi"; version="1.1-2"; sha256="1n8whpnpsm9imiz8l1jxq5x597ydzb2b54jkvrl05hmwh79p97in"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; - robeth = derive2 { name="robeth"; version="2.7-1"; sha256="06qkrjvg4yps4h6xdb81svx52vlw389z1j4brpv0w9h40ljpxbff"; depends=[]; }; + robeth = derive2 { name="robeth"; version="2.7-2"; sha256="049j24hxg7jy80xz615lj7l2mqiybm9zkmwznqpbzrz10s38dj3y"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; - robfilter = derive2 { name="robfilter"; version="4.1"; sha256="161rsqyy2gq1n6ysz0l4d4gqvxhs72hznc2d5hljxdaz3sbdzzig"; depends=[lattice MASS robustbase]; }; - robis = derive2 { name="robis"; version="1.0.0"; sha256="02spxy33vh675dvhx2v6f06hxzcwfrsmkzb6yk5h30xp21blqv4g"; depends=[dplyr httr jsonlite leaflet]; }; + robfilter = derive2 { name="robfilter"; version="4.1.1"; sha256="1fxqva2khk16sj5ka5zdpaknh2w9n925ys0i4v7ahqvzhnxg6l3b"; depends=[lattice MASS robustbase]; }; + robis = derive2 { name="robis"; version="1.0.1"; sha256="11j86nyslh52fxvl6m2vay638n5gqw4akd9d1mkqnpvrvxhm41l5"; depends=[dplyr httr jsonlite leaflet]; }; robmed = derive2 { name="robmed"; version="0.1.1"; sha256="1716vzci0lmim4n28bc2pjky1shjxqrclgllj3hc4dzf8j22dxbz"; depends=[boot ggplot2]; }; robotstxt = derive2 { name="robotstxt"; version="0.6.0"; sha256="1xia7xivqnqj0xis6i4qzm3v414ga1m7lmv1piz1b431faq9s1ai"; depends=[future httr magrittr spiderbar stringr]; }; robreg3S = derive2 { name="robreg3S"; version="0.3"; sha256="0rv8qh98wws1f40d1kmysyy9qin0ngsvwq63cnxbwi290wsnrvls"; depends=[GSE MASS robustbase]; }; @@ -10533,10 +10686,10 @@ in with self; { robustHD = derive2 { name="robustHD"; version="0.5.1"; sha256="14v6l0appy206zx1jcv7m14r2z9g12dpkm6zxzv756rca2yj8fp5"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; robustX = derive2 { name="robustX"; version="1.2-2"; sha256="0pgfq78qd8s40ciqval01bwajy6zfdjms1lbh0b5g0rww6920s6f"; depends=[robustbase]; }; robustarima = derive2 { name="robustarima"; version="0.2.5"; sha256="0mqlp4xmma74rgwb6rihbzs5nillcnddl6smlxmm8lq1wba27jdj"; depends=[splusTimeDate splusTimeSeries]; }; - robustbase = derive2 { name="robustbase"; version="0.92-8"; sha256="080ynchq8pvhnmbivj4fp74n0x9lyr9923sg0s9gq5irgm68kgxw"; depends=[DEoptimR]; }; + robustbase = derive2 { name="robustbase"; version="0.93-1"; sha256="10fsc50vqngi2a26fgi99bacq4rb05jg8kqw38r4n4khssw06rk4"; depends=[DEoptimR]; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; - robustlmm = derive2 { name="robustlmm"; version="2.1-4"; sha256="0qli04ylw25vc35k1maaddkn7rh8y5p7ggla1qvi8b1sglg43xhh"; depends=[ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; + robustlmm = derive2 { name="robustlmm"; version="2.2-1"; sha256="0xh77jrhjybrbcfzvfzywj8nanqyfgn93rhd1bixw4snz7l1n97x"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; robustloggamma = derive2 { name="robustloggamma"; version="1.0-2"; sha256="1cifyasrik010zs8jsz0kzzmwm3qmc0y7h2dahg2ibpwxfcqfcpq"; depends=[numDeriv RobustAFT robustbase survival]; }; robustrank = derive2 { name="robustrank"; version="2017.12-2"; sha256="0lcjn77lsdfbcby89hfcz2h049v2fndw7rankdcdgnl6lw2bdpvr"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-3"; sha256="0gcxxizsg380blrv55vl9f3az8gnr274c6idi0pimhh5c26h7ma6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; @@ -10546,14 +10699,15 @@ in with self; { rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; rocc = derive2 { name="rocc"; version="1.2"; sha256="00yxbbphhwkg4sj2h7pd9vw86yavl711nk8yylwmjd3qv39qjml0"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.1"; sha256="13pwrc31w279l7j58wdz24p8j9jdh53rsavj1mymj92jpm52nfzl"; depends=[glmnet pROC]; }; - rockchalk = derive2 { name="rockchalk"; version="1.8.110"; sha256="1991g4vslbanz6swvj76bwfc7xpnrcwqwr59xn8nzf7kkb721w6a"; depends=[car lme4 MASS]; }; + rockchalk = derive2 { name="rockchalk"; version="1.8.111"; sha256="0x82mmsvy41cw1chbrxwjj35fwimb3iv9lrlhxsslgix62xlskvx"; depends=[car lme4 MASS]; }; rococo = derive2 { name="rococo"; version="1.1.5"; sha256="062pj62haf0xw74p6c1dd20ipcxka8nn0mxsq490d22kqwm4vf5a"; depends=[Rcpp]; }; rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; rodeo = derive2 { name="rodeo"; version="0.7.4"; sha256="16yzj12m9wvcrqxc33rpbyzbq019swi5jxnbda9crfwjdvafaa0d"; depends=[deSolve R6]; }; rodham = derive2 { name="rodham"; version="0.1.1"; sha256="15mrlx7azvwkwjgfplvs5fhk2nwlg9pay2l99q327p8hx87jr8ra"; depends=[jsonlite plyr splitstackshape stringr tibble]; }; roll = derive2 { name="roll"; version="1.0.7"; sha256="059n1pl7692grzv4pmnj8s6cs2zi98lr1s5zi9pxg5vpw7r6h2v9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + rollRegres = derive2 { name="rollRegres"; version="0.1.0"; sha256="09vb06j8yyxw7k7dmni8s90wnvdk5l5x09gr76cvp4rjkx8jjlpj"; depends=[checkmate Rcpp RcppArmadillo]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; - rollmatch = derive2 { name="rollmatch"; version="1.0.0"; sha256="1v9kdfvci26vdyis6b9qb43w8mixx94hybvfmx3f55nbwng4dy00"; depends=[dplyr magrittr]; }; + rollmatch = derive2 { name="rollmatch"; version="1.0.1"; sha256="1bxd31s30jji97m93z4w4hdxdrfyp947dyzhjwmm13zc59mpfnvs"; depends=[dplyr magrittr]; }; rollply = derive2 { name="rollply"; version="0.5.0"; sha256="01rh4x9352ixdhrqdysapqx5ynksknyf8n230b340pxwaz2d7xhc"; depends=[plyr Rcpp stringr]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; rolypoly = derive2 { name="rolypoly"; version="0.1.0"; sha256="11nf7in6n03675l11ynl4rp20rlzy7jli3m518s4sqqxdm8f8ci7"; depends=[data_table dplyr foreach ggplot2 glmnet MASS Matrix matrixcalc]; }; @@ -10563,7 +10717,8 @@ in with self; { rope = derive2 { name="rope"; version="1.0"; sha256="06qp6h8cjnz0yacm4r39k99hrw74iyq16h5mqfcki7sf3zqbfm7r"; depends=[]; }; ropenaq = derive2 { name="ropenaq"; version="0.2.6"; sha256="065p4c8l4bqxy00clbjhad8hqw4gg2h2c00b06n2fa5n70z0akgq"; depends=[crul dplyr jsonlite lazyeval lubridate tidyr]; }; ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; - ropercenter = derive2 { name="ropercenter"; version="0.1.0"; sha256="0rp2dwdkl3qlwm8di0q184ppr77zs6i7njyr305pnxmbad119w9d"; depends=[dplyr foreign haven httr rvest stringr xml2]; }; + ropercenter = derive2 { name="ropercenter"; version="0.2.0"; sha256="1ghn666jhwmkxwrr8pc398nhzvg4y4097pa19m4b08d9mkg9iqlj"; depends=[dplyr foreign haven httr readr rvest stringr tibble tidyr xml2]; }; + roprov = derive2 { name="roprov"; version="0.1.0"; sha256="0g9jg9j91v705kygs4yx1y6s0cx5krr6kbg3jlgcsda9ldjmj7fy"; depends=[CodeDepends fastdigest igraph]; }; rorcid = derive2 { name="rorcid"; version="0.4.0"; sha256="1diz14b5jzs9i4khyykq58cbgz87qraivv9lhq5nrrrfi2gryl9r"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.9.0"; sha256="0pnrfc0dcbh5r3qwfwyb0q063bzwpw4ga60965y5qyxz64cyx74r"; depends=[httr jsonlite]; }; @@ -10578,9 +10733,9 @@ in with self; { rowr = derive2 { name="rowr"; version="1.1.3"; sha256="1f93c2yni956flwnxgphn340pc7p6yagr5xnmhinjgk9kvsd07yh"; depends=[]; }; roxygen2 = derive2 { name="roxygen2"; version="6.0.1"; sha256="0xpzziminf225kjwhyl51kgkzhplyzhk5farhf5s822krl2xqbfj"; depends=[brew commonmark desc digest R6 Rcpp stringi stringr xml2]; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; }; - rpanel = derive2 { name="rpanel"; version="1.1-3"; sha256="1wm0dcbyvxz4ily8skz2yda44n74x2nmc4pg11ja0yvk038gjfns"; depends=[]; }; + rpanel = derive2 { name="rpanel"; version="1.1-4"; sha256="0yzasb4k5jcx3wfsll9k9alyrwc0l1x6pk91nj7cqrdiapw8j519"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1-13"; sha256="0k29qx3k3pj5sgrpg0p47yd8i811rmdakaw57bigpq1449asc4cf"; depends=[]; }; - rpart_plot = derive2 { name="rpart.plot"; version="2.1.2"; sha256="1hn8s0fawwsr6j4m7wf38q7a608bjf9v1w706p49a08189baqdxz"; depends=[rpart]; }; + rpart_plot = derive2 { name="rpart.plot"; version="2.2.0"; sha256="1sh45ixd22nl7lxry82h74k4d5y2yvrs9g2ydqqv5jwkk7hmki11"; depends=[rpart]; }; rpart_utils = derive2 { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; }; rpartScore = derive2 { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; rpartitions = derive2 { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; }; @@ -10588,24 +10743,24 @@ in with self; { rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; }; rpdo = derive2 { name="rpdo"; version="0.2.3"; sha256="150kd9pvfr7msrh55vsqcj8lv994izlvhxf4g5n1qbzdcaqsdjzp"; depends=[checkr]; }; - rpf = derive2 { name="rpf"; version="0.56.1"; sha256="1332d5fzpsi988k1x57hyydjwrx3gxr3l7hgf946jrd8y1c2nj5d"; depends=[mvtnorm RcppEigen]; }; + rpf = derive2 { name="rpf"; version="0.59"; sha256="06gibjngl27mmvmni6ncz5qa4nlbxlna57f13607a9r739146378"; depends=[mvtnorm RcppEigen]; }; rpg = derive2 { name="rpg"; version="1.6"; sha256="1vn5cswrkmw98z1dr0f0yjkz3n8kwvjb4zknqg81fzqsagfc89yx"; depends=[getPass RApiSerialize Rcpp uuid]; }; rpgm = derive2 { name="rpgm"; version="1.1.2"; sha256="0pbja877gb3mn7m78lfdl217dm7qsrblq6gwrjh5wbv1nd532hvz"; depends=[]; }; rphast = derive2 { name="rphast"; version="1.6.9"; sha256="111m824z7z0lqdj4kk4cp1yfjhx7d5d9463k892dyvgjvkagvi9g"; depends=[]; }; - rphylotastic = derive2 { name="rphylotastic"; version="0.0.4"; sha256="1as3cndbrnby70qbi43q8v5gpyr8fpms30jwsarizwwbdrxbjgw9"; depends=[ape httr jsonlite phylobase rentrez]; }; rpicosat = derive2 { name="rpicosat"; version="1.0.1"; sha256="1zj2d6jairmvya91vhv9kpkf34zmzl9vlha5yvfjj0j0apmqc0li"; depends=[]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.3.0"; sha256="0ndhsw4nnz6wf0v8dh4sz8867m01jjkzw6aq7f490z1ypa3d9fv5"; depends=[htmlwidgets]; }; rplos = derive2 { name="rplos"; version="0.8.0"; sha256="0l38zllzklsy6q2l2r0v2x8wcsldnxjhilcsq5ykl1k35gbva19y"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; }; rplotengine = derive2 { name="rplotengine"; version="1.0-6"; sha256="1x9lf5h6cmjyi5xyvmk2ii2dwkwmjqbg0m1fhfabay0flqc7qdm0"; depends=[xtable]; }; - rpms = derive2 { name="rpms"; version="0.2.1"; sha256="14fljzxpxbsx5x06aq39rdq8h25n0z6bq7g7ncgjp1lgk9ml6gdq"; depends=[Rcpp RcppArmadillo]; }; + rpms = derive2 { name="rpms"; version="0.3.0"; sha256="0kdxjn2aij83ax0g1ipdb7qrvpqn67vhs3z54ihj1kbx4i8pzs9g"; depends=[Rcpp RcppArmadillo]; }; rpn = derive2 { name="rpn"; version="1.0"; sha256="0wk8y4yk6wqzbq5bqv6zncfp9az5vn8xgwh426pk3bxm3v4xi16i"; depends=[BBmisc checkmate]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; rportfolios = derive2 { name="rportfolios"; version="1.0-1"; sha256="00xxh85jpl0rw8fv84i7zmq0psc92pq7hharnr4szbmhgz8kbc35"; depends=[truncdist]; }; rpostgis = derive2 { name="rpostgis"; version="1.4.0"; sha256="0rgi7ax2n2fln12501zshwaz23nns9qk4vy1ylnaqb4bg0x30gn4"; depends=[DBI raster rgeos RPostgreSQL sp]; }; rpostgisLT = derive2 { name="rpostgisLT"; version="0.6.0"; sha256="1adwpkfndm6n3s9xcx8zrwnj6bmgvq4nzs072fnl5i6kjy6ngjm6"; depends=[adehabitatLT DBI htmltools leaflet lubridate magrittr mapview rpostgis RPostgreSQL sf shiny shinyWidgets sp]; }; - rpql = derive2 { name="rpql"; version="0.5"; sha256="1d5mr04jk08l617zkqn13njglwj0w9an1rix937bcxw69blshahi"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm]; }; - rprev = derive2 { name="rprev"; version="0.2.4"; sha256="1krrplgi2qfcm5kdz2am8fq8kjx67gjwxyd4ylf406r18xbvjd1d"; depends=[doParallel dplyr foreach ggplot2 lazyeval magrittr rms survival tidyr]; }; + rppo = derive2 { name="rppo"; version="1.0"; sha256="0agqys52l8bb3mc3bpawym12phl5r1ymalfvgrq5w6n78lpzcxls"; depends=[httr jsonlite plyr readr]; }; + rpql = derive2 { name="rpql"; version="0.6"; sha256="0kbxhh0pacgh5d490665a5k00qh93rv5k7v3g73vrgn6lc085a54"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; + rprev = derive2 { name="rprev"; version="1.0.0"; sha256="0v8ibflqbc45qss2jnnalqhq788cp6gpx1lylcwj2h9k4i8qgi4c"; depends=[data_table doParallel dplyr foreach ggplot2 lazyeval lubridate magrittr survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; rprojroot = derive2 { name="rprojroot"; version="1.3-2"; sha256="12r3fdxmi2pmwn6ic3rhg0b20ll5z420m0d8fziv1n21961namnz"; depends=[backports]; }; @@ -10615,44 +10770,46 @@ in with self; { rptR = derive2 { name="rptR"; version="0.9.21"; sha256="0wqh9d372s2222qm5w0wx77l2sj7zvdnl7zvxcn5wfs3cz84fj15"; depends=[lme4 pbapply]; }; rpubchem = derive2 { name="rpubchem"; version="1.5.10"; sha256="06j9ir65ykky5hdbyv74fnddwqd39jxvr6jig0kjqisc75k4spjz"; depends=[base64enc car data_table fingerprint iterators itertools RCurl RJSONIO stringr XML]; }; rqPen = derive2 { name="rqPen"; version="2.0"; sha256="13m21v753njaramgpbhn0lb793b6946crv5v8vl127w38q0z3wyd"; depends=[quantreg regpro]; }; - rquery = derive2 { name="rquery"; version="0.4.2"; sha256="018m46iqrbs4h20clhqhxydd9y43swhdq1mmb00hvzlfbwbxi05r"; depends=[DBI wrapr]; }; + rqdatatable = derive2 { name="rqdatatable"; version="0.1.1"; sha256="14m0sfl46kkzwv4pmgl8wc4sxb9b14lbx3m3c7r6d3iv6jjmaaj2"; depends=[data_table rquery wrapr]; }; + rquery = derive2 { name="rquery"; version="0.5.0"; sha256="1ssf7mxj8dy78v9a9bmaxppp2cygpcqndir40vavl6fm9v34s0nq"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6"; sha256="1bw4pjj9hm9ik5bvvklnlkykhlqm6k7pbkma1iwc3kbg8shpbd18"; depends=[]; }; rrBlupMethod6 = derive2 { name="rrBlupMethod6"; version="1.3"; sha256="1qwv954mhry46ff2ax48xcmnasygi5alv8d413g3qbk2da6i0d8l"; depends=[]; }; - rrcov = derive2 { name="rrcov"; version="1.4-3"; sha256="0kagqggi634mvrhd67ia7mpjrj5v6w2wq0z3kyppg5xkvzh335nq"; depends=[cluster lattice mvtnorm pcaPP robustbase]; }; + rrcov = derive2 { name="rrcov"; version="1.4-4"; sha256="0wn5h8vi0zyk5ah898m37ysz4kiih6y792nb9zdvhvd8r07f0sc5"; depends=[cluster lattice mvtnorm pcaPP robustbase]; }; rrcov3way = derive2 { name="rrcov3way"; version="0.1-10"; sha256="0ybl759mfva185z2mjs5s8cjim9h8dk4gkqnva2rj9kxp7i45srd"; depends=[robustbase rrcov ThreeWay]; }; rrcovHD = derive2 { name="rrcovHD"; version="0.2-5"; sha256="1wv50lcjf0fsxb1zagxbrcx68ilfmnmkc8ccpy9hw3qql5p368ij"; depends=[pcaPP pls robustbase robustHD rrcov spls]; }; rrcovNA = derive2 { name="rrcovNA"; version="0.4-9"; sha256="1qc9xqm5x55dqjx1y7s4a2nwc07v32rygicbb8469knxasf92cs3"; depends=[cluster lattice norm robustbase rrcov]; }; + rrd = derive2 { name="rrd"; version="0.2.1"; sha256="1n4590h3xzja7j8fzay4b8rp98wnilg2znnkbw4ffk9fdac2wr5l"; depends=[assertthat tibble]; }; rrecsys = derive2 { name="rrecsys"; version="0.9.7.3"; sha256="034p7ncnzlkniicl5nd58m9wjy7mc00f027zpg5das226svhfywf"; depends=[ggplot2 knitr MASS Rcpp registry]; }; rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; }; rredlist = derive2 { name="rredlist"; version="0.4.0"; sha256="0j2hab26zs9dyg9fggza7yffbvwvnmrk5frbfs2ys8h3hg2x6ncy"; depends=[crul jsonlite]; }; rrefine = derive2 { name="rrefine"; version="1.0"; sha256="1lh3vddrp5k9bhz5spv93w0qm9z5lskpdgxfksys0l3275hzx1lm"; depends=[httr readr rlist]; }; rreg = derive2 { name="rreg"; version="0.2.1"; sha256="05c2yj58zn43zkmqp4iyblsixsq76hsjkchffl5rkqynvgxi0qzi"; depends=[directlabels ggplot2]; }; - rrepast = derive2 { name="rrepast"; version="0.6.0"; sha256="1d6nk6437c4bxbyvpzdlgd1kxh651979m0k7aadi9fl77i5k2x3w"; depends=[digest ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; - rres = derive2 { name="rres"; version="1.0"; sha256="16blkbmma5wj5zigl9yr62kbffyk2amvq45gvgpdj726qdskymcx"; depends=[kernlab Rcpp]; }; + rrepast = derive2 { name="rrepast"; version="0.7.0"; sha256="1s596sk993aam5rsb4as2y3n5wcgjlnb25b29l59z0xks1v04mnc"; depends=[digest doParallel foreach ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; + rres = derive2 { name="rres"; version="1.1"; sha256="138m26ya119805b1akwski0hf1ypiqsqjlkrm9p0l2x22zrv1n60"; depends=[kernlab Rcpp]; }; rriskDistributions = derive2 { name="rriskDistributions"; version="2.1.2"; sha256="1d9dwgw8la8wwq9cdnl7qibkzbdl4cj0qvf05x7w13ip973dwpaq"; depends=[eha mc2d msm tkrplot]; }; rrlda = derive2 { name="rrlda"; version="1.1"; sha256="06n9jah190cz25n93jlb5zb0xrx91bjvxgswwdx9hdf0fmwrpkvz"; depends=[glasso matrixcalc mvoutlier pcaPP]; }; rroad = derive2 { name="rroad"; version="0.0.5"; sha256="09q5r9wq3vm5wy5aigx9wffv7m0njlp3sma1djm6cp7hhwgss0nj"; depends=[]; }; rrpack = derive2 { name="rrpack"; version="0.1-7"; sha256="0svrw2ik59hjyfb0kag4nv8ilcaz7irmkp7ndbxxn0jg7dacb411"; depends=[ggplot2 glmnet lassoshooting MASS Rcpp RcppArmadillo]; }; rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; }; - rsMove = derive2 { name="rsMove"; version="0.2.3"; sha256="0s256ifiq76rakabw2jn5jslsdd0r55cy7hm55214pgjfq8fiqpi"; depends=[caret gdalUtils ggplot2 raster RCurl rgdal sp]; }; + rsMove = derive2 { name="rsMove"; version="0.2.4"; sha256="01iag63vskm68zjgq5qmgiimhmxcmp0mq6qarzsr3jlgmxix6kqs"; depends=[caret gdalUtils ggplot2 igraph lattice lubridate pryr randomForest raster RCurl rgdal sp spatialEco]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsample = derive2 { name="rsample"; version="0.0.2"; sha256="10lmpy4ca045j2fxbz5xzl1w9242dkp6sc8hhrk0fxs0dkfb7amf"; depends=[broom dplyr purrr recipes rlang tibble tidyr]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; - rscala = derive2 { name="rscala"; version="2.5.3"; sha256="0a6l7inx6shyxma0a0kf2jh8402n7xavpday4k7lr316v62lyq29"; depends=[]; }; + rscala = derive2 { name="rscala"; version="3.0.2"; sha256="0gbi2q63pbl8izyq8wjrjn9d0746ylak8fp7zsjzw56gjpak79q3"; depends=[]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; rsconnect = derive2 { name="rsconnect"; version="0.8.8"; sha256="019phwamg2irb0ak9y0sn25ihi0a9sfdpa02dz9x0bhpcg55x0li"; depends=[digest packrat PKI RCurl RJSONIO rstudioapi yaml]; }; - rscopus = derive2 { name="rscopus"; version="0.5.3"; sha256="1d6265ffmhd6ajlp607y5jy77nqgcrdym6w1j8vnil0705z3swzb"; depends=[httr plyr tidyr]; }; + rscopus = derive2 { name="rscopus"; version="0.5.11"; sha256="1h0lj68znfy1jc2b7qbxj0cq8y2blhwz2p82cfn321yhca0s818c"; depends=[dplyr httr plyr tidyr]; }; rscorecard = derive2 { name="rscorecard"; version="0.7.1"; sha256="1j7v383gcb13bi6d1v59pkx6d9g4yichyyh5ads9w82qq6v31xnw"; depends=[dplyr httr jsonlite lazyeval magrittr]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; - rsdmx = derive2 { name="rsdmx"; version="0.5-11"; sha256="06sjkjl9y2fg2yz740a1z5zn4afnjfv1nsykszxsnwn7s23rxi31"; depends=[plyr RCurl XML]; }; + rsdmx = derive2 { name="rsdmx"; version="0.5-12"; sha256="0qzbn3d6vkvn8qnjymmjbqgcffglnl5qm2zm4v6694xwcc1msvwx"; depends=[plyr RCurl XML]; }; rsed = derive2 { name="rsed"; version="0.1.2"; sha256="1rk7wkidvdn1d39a11cbgglz2dg74bbv3v1ijjdx903kgwg3nnrc"; depends=[Smisc]; }; rseedcalc = derive2 { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; }; rsem = derive2 { name="rsem"; version="0.4.6"; sha256="16nsbp4s20396h2in0zymbpmsn24gqlbik0vgv86zhy1yg1rz9ia"; depends=[lavaan MASS]; }; rsgcc = derive2 { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene snowfall stringr]; }; rsggm = derive2 { name="rsggm"; version="0.3"; sha256="17yzvd5vs2avp0nzk7x9bi4d7p6n9nv7675qpgfpwkfqp25lax73"; depends=[glasso MASS Matrix QUIC]; }; - rsig = derive2 { name="rsig"; version="1.0"; sha256="129k78i8kc30bzlphdb68vv3sw2k6xyiwrhw08vhzz6mf3jxlqsh"; depends=[BBmisc glmnet Matrix superpc survcomp survival]; }; - rsimsum = derive2 { name="rsimsum"; version="0.3.1"; sha256="0rg3flfh2wwa3xyjsb041k94jryx2yxf8kb0nnvy9wgybn3v1c01"; depends=[checkmate ggplot2]; }; + rsimsum = derive2 { name="rsimsum"; version="0.3.3"; sha256="0h08klkdn84y32xlaafig1jj5ni79j4yx2pp3pg2qfmpimxcm44w"; depends=[checkmate ggplot2]; }; + rsinaica = derive2 { name="rsinaica"; version="0.5.0"; sha256="12jzbay7vm1ziqdjx8i7wkb3f354q95qfayasr3prl16sz80kpp7"; depends=[dplyr httr jsonlite lubridate stringr]; }; rslp = derive2 { name="rslp"; version="0.1.0"; sha256="06glpdsd309058kxww114j9sshvj6gw9g5sdm4zkmzq3cl91fa6h"; depends=[magrittr plyr stringi stringr]; }; rslurm = derive2 { name="rslurm"; version="0.4.0"; sha256="1ck4ky5d0pf8hnxz1ijbjk0nfyj1hfnhf9la5qrqw2spa09z82ki"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.9"; sha256="1rj2qdlv44hbv1ipv7hdpssn90ypp6bfc7nqdaf9dak0bd6khwni"; depends=[estimability]; }; @@ -10660,7 +10817,7 @@ in with self; { rsoi = derive2 { name="rsoi"; version="0.3.0"; sha256="0syl90akbbg50pyhsa4nyq2r4psi2n6qg48a4nxprgz412n8rjbv"; depends=[dplyr lubridate readr]; }; rsolr = derive2 { name="rsolr"; version="0.0.8"; sha256="1swhg7hnkdphnw0d9jrzn18nk2v5a6ny7n652fh8d0k88a27xx4d"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; rspa = derive2 { name="rspa"; version="0.2.1"; sha256="0m3h25jxfccdqy4gf3cls4wcdpw580yfmb3lvw4ndfva8lj2q6sy"; depends=[lintools validate]; }; - rsparkling = derive2 { name="rsparkling"; version="0.2.3"; sha256="1dskwni79hrskwmlvlbm4v9fy59bvzgcjqwsdqk31iz3xfaanj39"; depends=[h2o sparklyr]; }; + rsparkling = derive2 { name="rsparkling"; version="0.2.4"; sha256="0ykk8lvigi3hb5iz7rxsi3brf4ydg2kxmaks4vk0vrkanyifs7xp"; depends=[h2o sparklyr]; }; rsq = derive2 { name="rsq"; version="1.0.1"; sha256="1c7604g48rcsbfk66xfwia1jaxlqsjiw19zx9pg51n8d6c0l17zb"; depends=[MASS]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; @@ -10669,77 +10826,82 @@ in with self; { rstansim = derive2 { name="rstansim"; version="0.1.1"; sha256="09hg4ishzp6q90nrl94h21al0ad0jn7fr8brp8f0xa9cvkwlzjpg"; depends=[doRNG doSNOW foreach loo Rcpp rstan]; }; rstantools = derive2 { name="rstantools"; version="1.5.0"; sha256="19rzcfiirw539hxs98j33gccwigdpwf3nj1w5jwwzank217wmgg4"; depends=[]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.1"; sha256="0aj4x3lyrldpgh90v90qbxylndacn5ri5yqff3qy53q45ar7yji3"; depends=[httr jsonlite]; }; - rstiefel = derive2 { name="rstiefel"; version="0.10"; sha256="0b2sdgpb3hzal34gd9ldd7aihlhl3wndg4i4b3wy6rrrjkficrl1"; depends=[]; }; - rstpm2 = derive2 { name="rstpm2"; version="1.4.1"; sha256="0pgy9a8llj0zzzc06afzd0w11mdbx3xvmjf0qpzvsid1zqdbcqxr"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; + rstiefel = derive2 { name="rstiefel"; version="0.20"; sha256="1wrl7rc4nrnxjs26l9v36x3mpx33mjijk27nbzidwrhp9gppzz1i"; depends=[]; }; + rstpm2 = derive2 { name="rstpm2"; version="1.4.2"; sha256="19cijqx1jblhgwzr0q1p7aaiajnrf5g9l4fw67p69nv4nljcypan"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.5"; sha256="1wprsnwl63cc4a6j5h18r09wlh32bq5z6hj6r5klp7rkpjchsplp"; depends=[]; }; rstudioapi = derive2 { name="rstudioapi"; version="0.7"; sha256="133s75q2hr6jg28m1wvs96qrbc9c4vw87migwhkjqb88xxvbqhd5"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; }; - rsunlight = derive2 { name="rsunlight"; version="0.4.2"; sha256="1m4ya960zjqxbjcjj42gjmdy40ac7m471fkfsd0r6w675qbiiw87"; depends=[httr jsonlite plyr stringr]; }; - rsurface = derive2 { name="rsurface"; version="1.0.2"; sha256="0lmwk8gk9h9np5fp652zvlapfdwgifarmib23dnifn5d904ia2sl"; depends=[plotly rsm]; }; + rsunlight = derive2 { name="rsunlight"; version="0.7.0"; sha256="0v2wrgq8fxvkf8sf4z4wi4bbvbskw5wzcplns9imwfmm3y2pabyi"; depends=[crul data_table jsonlite plyr stringr tibble]; }; + rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; }; rsvd = derive2 { name="rsvd"; version="0.9"; sha256="1d71y4r27gpwsaq195yys301va8wdc2bvwxjk6501f7ma2yhl7y9"; depends=[]; }; - rsvg = derive2 { name="rsvg"; version="1.1"; sha256="17jfspbvlfp2cdw9s4m128rqw5kvb7i5h335569n3518spqmgi4f"; depends=[]; }; + rsvg = derive2 { name="rsvg"; version="1.3"; sha256="11mccgf6hfskg45wqc114sx3qy2r494y6axdf73z6xwhs1wpm97g"; depends=[]; }; + rsyslog = derive2 { name="rsyslog"; version="1.0.1"; sha256="1i33bpv894jk7cixsvn85h1g532zj39f8dfqq8cyzgsav9wba2y4"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; rtable = derive2 { name="rtable"; version="0.1.5"; sha256="1a9x0qcbp96wg86nbvx25yh5viwvf5sqb41z3cvr5i7br2ji8n5i"; depends=[knitr ReporteRs shiny tidyr xtable]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; - rtdists = derive2 { name="rtdists"; version="0.8-1"; sha256="0chhlnx3zppsxxwnq3h2aykdpm6zcg2nmrdgxfy14yw133fnbykf"; depends=[evd gsl msm Rcpp]; }; + rtdists = derive2 { name="rtdists"; version="0.8-3"; sha256="1p8j50snlfc4rs7fvzd2ny1i47vy3d6xmik4rhyppvv4kr47nwhm"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; rtext = derive2 { name="rtext"; version="0.1.20"; sha256="0455rwfxmpgb4qb925ildqr4km4ndgqjxgvk90x2dhfivgmmn60k"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; - rtf = derive2 { name="rtf"; version="0.4-11"; sha256="04z0s5l9qjlbqahmqdaqv7mkqavsz4yz25swahh99xfwp9plknfl"; depends=[R_methodsS3 R_oo]; }; + rtf = derive2 { name="rtf"; version="0.4-13"; sha256="1gwvw98lnym305z9awjaximrmkl4kkki59blbwqs2js42iqcx2m3"; depends=[R_methodsS3 R_oo]; }; rtfbs = derive2 { name="rtfbs"; version="0.3.9"; sha256="02irj6c7nfgp42yb5zdmhbr5pi09xgx0z76d1ccfczjf0r1cyvfz"; depends=[rphast]; }; rticles = derive2 { name="rticles"; version="0.4.1"; sha256="1f2a60jmlsiga377ihhy8sm9amqn7fd91sd4vx682b97hfh3zn39"; depends=[knitr rmarkdown yaml]; }; rtide = derive2 { name="rtide"; version="0.0.4"; sha256="0i3mf3818s62mmn315brv2axpwiiz646k5hv8z26z7s4ahxavrc0"; depends=[abind datacheckr lubridate magrittr plyr stringr tibble tidyr]; }; rtiff = derive2 { name="rtiff"; version="1.4.5"; sha256="0wpjp8qwfiv1yyirf2zj0696zb7m7fpzn953ii8vbmgzhakgr8kw"; depends=[pixmap]; }; + rtika = derive2 { name="rtika"; version="0.1.8"; sha256="1lkcrs3cdfcgy86vbvjfxqs2jxw4imz16s6c3pxhdl8r0byjdndk"; depends=[curl rappdirs sys]; }; rtimes = derive2 { name="rtimes"; version="0.5.0"; sha256="1z8iaxkvd99fnk46vzbw6lax2qayng6s5n1sxn78kvp8py552f61"; depends=[crul data_table dplyr jsonlite tibble]; }; rtimicropem = derive2 { name="rtimicropem"; version="1.3"; sha256="1z7nrmzwdgz7fy2i23rl07jd39sdxqsdmmmkaaxzagj7whd58inj"; depends=[changepoint dplyr ggplot2 knitr lazyeval lubridate pathological R6 rbokeh readr stringr tibble tidyr]; }; rtip = derive2 { name="rtip"; version="1.1.1"; sha256="0lfny8nvgnf90xsmgmr32nzjbw8117m4vw7d0bc3xm4pzpnymjdq"; depends=[boot ggplot2 mvtnorm plyr rootSolve]; }; rtk = derive2 { name="rtk"; version="0.2.5.4"; sha256="1nh757l4ih5pmmh7b84ca1f5wpz9mcksdb0a4rvs2hhgap38ihg9"; depends=[Rcpp]; }; rtkore = derive2 { name="rtkore"; version="1.5.1"; sha256="03vmgrsil5yrrs3ndgqvfcwv9plcawc8v2y2x9nwcashxg40djn6"; depends=[Rcpp]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; + rtrek = derive2 { name="rtrek"; version="0.1.0"; sha256="05dzqylvv8rgh0sxl2qa2zvxnmilwmxsa6f99mh6ygcf9pal8jzd"; depends=[dplyr jsonlite magrittr purrr]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; rtrim = derive2 { name="rtrim"; version="2.0.4"; sha256="1xl3xai768idnfc30hp20cnpq3a07049p7vpkqpdrpla6a8zhvqk"; depends=[]; }; rts = derive2 { name="rts"; version="1.0-45"; sha256="11gvgj5bqiacsf51sg4dj7jpsjgdj6j26vqc8by15325a4c804ml"; depends=[raster RCurl sp xts zoo]; }; rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; - rtweet = derive2 { name="rtweet"; version="0.6.0"; sha256="0bh483wfl4f8xscdyv3ys5hhdabc91dynlbqlxxv8mil7pgg3chg"; depends=[bit64 httr jsonlite magrittr openssl readr tibble]; }; + rtsplot = derive2 { name="rtsplot"; version="0.1.0"; sha256="1iz7m1r46d1b84fbbkby42ry8plp226gh38krrdgzshfcf2a6856"; depends=[quantmod RColorBrewer TTR xts zoo]; }; + rtweet = derive2 { name="rtweet"; version="0.6.7"; sha256="0blyggy559cginfavmwzli1ibjbh1lbipyyi4bs2h9mvx9iwkl2l"; depends=[httr jsonlite magrittr tibble]; }; rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; rtypeform = derive2 { name="rtypeform"; version="0.3.3"; sha256="13nqlgi4wwby8ka014ggilnh2m4qr940zbsks27zfd7q56ng7sbq"; depends=[httr jsonlite purrr tibble]; }; rubias = derive2 { name="rubias"; version="0.1.0"; sha256="0k8f1aaj3zpxqkhzjfl7iyyx7pjssp5lldajjsghw110j75qksh4"; depends=[dplyr ggplot2 gtools magrittr Rcpp readr rlang stringr tibble tidyr]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; rucrdtw = derive2 { name="rucrdtw"; version="0.1.3"; sha256="0wbh9zbgqf5bk1ix5qry18lhgdqk90pn5xnv401268gldjy4z777"; depends=[Rcpp]; }; rugarch = derive2 { name="rugarch"; version="1.4-0"; sha256="0b0rq88v93945g7pr6xin7wfdm8zl2vw8hxwa2kfak4xnrrprsyy"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; - ruler = derive2 { name="ruler"; version="0.1.2"; sha256="1d0vf505fyinq4k2lfcvsii9fxs2xygfj5hrcwd566arpd2wkg7m"; depends=[dplyr keyholder rlang tidyr]; }; + ruler = derive2 { name="ruler"; version="0.1.3"; sha256="000hnnnz3zccpshpi725f67kbfr3hnpgr48zyz24pbynyz3d7vap"; depends=[dplyr keyholder rlang tidyr]; }; runittotestthat = derive2 { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; }; runjags = derive2 { name="runjags"; version="2.0.4-2"; sha256="035sxmh0b0m6dwz8qbpsmw2p7ihkx3cxgkhj27i0j6dsjryl3x4p"; depends=[coda lattice]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; - rusk = derive2 { name="rusk"; version="0.1"; sha256="05ci4f0k2b54sqf0h6j38h3kkq3r27klva0hfg968snr9bb6v0wv"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; - rust = derive2 { name="rust"; version="1.3.4"; sha256="1jb970kskl2wdhqcjbxl8gh986abdy96jbipnsdi3656ic5dxivn"; depends=[Rcpp RcppArmadillo spatstat]; }; + rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; + rust = derive2 { name="rust"; version="1.3.5"; sha256="16jrf1nfn3wnkrbzp5bjkqi0q0vpy82ra6f0vs1pyk5hw5jhshg9"; depends=[Rcpp RcppArmadillo spatstat]; }; + ruta = derive2 { name="ruta"; version="1.0.2"; sha256="18r6vcjlxarwdc2gi1d1r5lq763nnvsy7ccq77lbl3cswx5s7x1q"; depends=[keras purrr]; }; ruv = derive2 { name="ruv"; version="0.9.7"; sha256="1ynxmax9sz74s8abmmizla6jas385mn5ij151mq35k0yv1xszzj5"; depends=[ggplot2 gridExtra scales]; }; - rv = derive2 { name="rv"; version="2.3.2"; sha256="108s9q19h5ypxb9w4a8nk97js261izag1sf75g4xfqblwxxrbflc"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; - rvcheck = derive2 { name="rvcheck"; version="0.0.9"; sha256="14pa7fa7yyhmk0v5md7x5xr5jd4gjwjlvgbynnhq30fj56qffyvf"; depends=[]; }; + rvalues = derive2 { name="rvalues"; version="0.6.3"; sha256="1bsdvwcijb75f27c8padjx8663as667axc4skwa6xgv5y423kbd0"; depends=[]; }; + rvcheck = derive2 { name="rvcheck"; version="0.1.0"; sha256="0b3vw1r4aglciwmjqm8dvlizydydwcgnpwkzib2g9k69a355iyi0"; depends=[]; }; rversions = derive2 { name="rversions"; version="1.0.3"; sha256="0i2gi05nrvknr7g89rbppkswyfcwwd4r9gp75fdfhpah8sgq1l11"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.7.0"; sha256="01z3ij5z21v901hz4l9173r4pa9jz2nl7bx086ka1bxvcy0dgqgj"; depends=[crul dplyr ggplot2 jsonlite maps]; }; rvest = derive2 { name="rvest"; version="0.3.2"; sha256="04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"; depends=[httr magrittr selectr xml2]; }; - rvg = derive2 { name="rvg"; version="0.1.8"; sha256="03hank94b5d1spig9jzrm5h2xbipi8skwqjg8sfwxwy5sjyrbaam"; depends=[gdtools officer Rcpp xml2]; }; + rvg = derive2 { name="rvg"; version="0.1.9"; sha256="0r2amwygazq1sff8fl0k618fxs2d5pxp5ryz7kqyjkcnxfghgnxf"; depends=[gdtools officer Rcpp xml2]; }; rvgtest = derive2 { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; - rvinecopulib = derive2 { name="rvinecopulib"; version="0.2.7.1.0"; sha256="1w3nwxpvmmkcvyymhz434xh6srjc87hj824bcjydmavx221ncf6p"; depends=[BH lattice Rcpp RcppEigen RcppThread]; }; + rvinecopulib = derive2 { name="rvinecopulib"; version="0.2.8.1.0"; sha256="0n92822pgspq17wy52zmvch2ag9fc577y64myzg5b7hz7fqd96mq"; depends=[assertthat BH cctools kde1d lattice Rcpp RcppEigen RcppThread]; }; rwalkr = derive2 { name="rwalkr"; version="0.3.3"; sha256="03kpv4hvlajm09cqrlihia62pcj1skakx28ci4mgbfgpjy6l4jsl"; depends=[dplyr httr tibble tidyr]; }; rwars = derive2 { name="rwars"; version="1.0.0"; sha256="0kmwpr6gn3xsf0pqx153vblpjbhc34mzlgyv8xb2nw78nf8znfij"; depends=[httr]; }; - rwc = derive2 { name="rwc"; version="1.1"; sha256="0gdpskj87wjnpas90i3iqn1qv6frrki2xqiyyakg3zpaviw1imag"; depends=[MASS Matrix mvtnorm raster]; }; + rwc = derive2 { name="rwc"; version="1.11"; sha256="1qhgkbkp4nz0wq5c4x8232xiszpiyzcdklfgvpnx4cbp3bbfdi4g"; depends=[MASS Matrix mvtnorm raster]; }; rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; }; rworldmap = derive2 { name="rworldmap"; version="1.3-6"; sha256="1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"; depends=[fields maptools sp]; }; rworldxtra = derive2 { name="rworldxtra"; version="1.01"; sha256="183z01h316wf1r4vjvjhbj7cg4xarn4b8qbmnn5y7nrrdndzi163"; depends=[sp]; }; rwt = derive2 { name="rwt"; version="1.0.0"; sha256="112wp682z4gkxsd3bqnlkdrh42bfzwnnhzyangxi2dh0qw63bgcr"; depends=[matlab]; }; rwty = derive2 { name="rwty"; version="1.0.1"; sha256="1w66jlcbn8javlr2l0qinah3cxxadpjzvbz088saysyg277ikfxm"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; - rwunderground = derive2 { name="rwunderground"; version="0.1.7"; sha256="1mdqlijjximfxqd9bx4hnsayq9h3ss7fp3hr2vxx2qb60b0fjx67"; depends=[countrycode dplyr httr lubridate]; }; + rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; rxylib = derive2 { name="rxylib"; version="0.2.1"; sha256="0qfdd7z9as6igc82i8dbvjz03jk8scxz599jw8xm69y5qs5zf104"; depends=[BH Rcpp]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; rysgran = derive2 { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; }; rzmq = derive2 { name="rzmq"; version="0.9.3"; sha256="04rb54gr1wr0nczxnhk5jbk9ar65yn2vs8bsa41i1hfhzjhnsvxb"; depends=[]; }; - s2 = derive2 { name="s2"; version="0.3-0"; sha256="16258mmp4rkfpqa6255s7fdd44why0vky2rxb52440fgpwic5zdq"; depends=[Rcpp]; }; - s20x = derive2 { name="s20x"; version="3.1-26"; sha256="1p931r8y4c9fac8x29sxw33q1knfjf78saj348mxddaaqrf90v1n"; depends=[]; }; + s2 = derive2 { name="s2"; version="0.4-0"; sha256="1mpivllq3r3kn7msb7qn9h8fr31jl5cvfg1pdq1wi69k4bznd8y0"; depends=[Rcpp]; }; + s20x = derive2 { name="s20x"; version="3.1-27"; sha256="021f9l34svx42mnzi080rr44sxz9zjvcnxljakcag02r4hl52pcp"; depends=[]; }; s2dverification = derive2 { name="s2dverification"; version="2.8.0"; sha256="13cjzxrjwahjhdw5q8lpbwgywgswqrcnj7rkff9kraan9lj83bkk"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; s4vd = derive2 { name="s4vd"; version="1.1-1"; sha256="1rp3z42nxmrvb942h3c5cl544lngzx7nrnnr4zjw7dq495bym7yp"; depends=[biclust foreach irlba]; }; sAIC = derive2 { name="sAIC"; version="1.0"; sha256="1ih63cfs98kb61gwbmrx2yq7iacb5qa1qrh1a264041qd27r5pj5"; depends=[]; }; @@ -10747,31 +10909,32 @@ in with self; { sBIC = derive2 { name="sBIC"; version="0.2.0"; sha256="1fx17c9w7v6wi02i293vjdahwxx4b5a118r655cl12gsd5qwqj11"; depends=[combinat flexmix hash igraph mclust poLCA R_methodsS3 R_oo Rcpp]; }; sEparaTe = derive2 { name="sEparaTe"; version="0.2.1"; sha256="0k1c0wa052f1fprc9jn0i3g2cawxfhkan998jlhkr4iy986jynw9"; depends=[]; }; sExtinct = derive2 { name="sExtinct"; version="1.1"; sha256="1l6232z6c4z3cfl1da94wa6hlv9hj5mcb85fj1y0yparkvvl8249"; depends=[lattice]; }; - sFFLHD = derive2 { name="sFFLHD"; version="0.1.1"; sha256="19zhx0rc6h44301a5q68r9jbxzh12ci3387d1c319vdiw05nschy"; depends=[conf_design DoE_base]; }; + sFFLHD = derive2 { name="sFFLHD"; version="0.1.2"; sha256="014gy3nj6gr740z4apw82jh4n7s57zmnr95bm3g9xxnwnb224npq"; depends=[conf_design DoE_base R6]; }; sGMRFmix = derive2 { name="sGMRFmix"; version="0.3.0"; sha256="183i3159k2cxpanm09zcy2y1vvjd6185gjjf81c3284prw3aky2c"; depends=[ggplot2 glasso mvtnorm tidyr zoo]; }; sNPLS = derive2 { name="sNPLS"; version="0.3.31"; sha256="0ja2f4n000r7cvf0jj2qypa5mfkikig47hfpqwh4611sl70qgx2y"; depends=[car ggplot2 ks MASS Matrix pbapply plotrix rgl]; }; sRDA = derive2 { name="sRDA"; version="1.0.0"; sha256="0g11smn4adm3b79m9w7wzcragxggkf8rrrsgj2yzdhm1d7zzjwbk"; depends=[doParallel elasticnet foreach Matrix mvtnorm]; }; sROC = derive2 { name="sROC"; version="0.1-2"; sha256="0cp6frhk9ndffb454dqp8fzjrla76dbz0mn4y8zz1nbq1jzmz0d3"; depends=[]; }; sSDR = derive2 { name="sSDR"; version="1.2.0"; sha256="1fqsglqzsbzdvcdnwwf7mg6x20zfpw66x63r6avac3w1pz3n7kvx"; depends=[MASS Matrix]; }; - sValues = derive2 { name="sValues"; version="0.1.4"; sha256="0y2cv3wls2y3zpbm2d098xj5n098yjl32yi7mwha6mhfwfa4y99l"; depends=[caTools ggplot2 reshape2]; }; + sValues = derive2 { name="sValues"; version="0.1.5"; sha256="0y234nci9pnc10xyiwxllvb5b48ajga2y0k5fv9izlwkbc5wpiaw"; depends=[caTools ggplot2 reshape2]; }; saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; }; + sabre = derive2 { name="sabre"; version="0.2.0"; sha256="1mcjchw1hw1ry5vkl50jrz4bm82b4fqzhgn2xp2kdzwsgvq61dbm"; depends=[dplyr entropy rlang sf tibble tidyr]; }; sac = derive2 { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; sadists = derive2 { name="sadists"; version="0.2.3"; sha256="17jlzx5h5l1w7riz0rs99w31n6lxnnxwzbzqn2z5r292j2nxvmkw"; depends=[hypergeo orthopolynom PDQutils]; }; - sads = derive2 { name="sads"; version="0.4.1"; sha256="1ir5cfjw3416gg7bvfp2qrn9qy1xbklb9a57rp06ghjg7d4slwpr"; depends=[bbmle GUILDS MASS poilog VGAM]; }; - sae = derive2 { name="sae"; version="1.1"; sha256="1izww27cqd94yrfbszbzy44plznxsirzn0752ag7xw7qzm5ywp3d"; depends=[MASS nlme]; }; + sads = derive2 { name="sads"; version="0.4.2"; sha256="1j6vdjvpnbqp4kwbvhcl8p51ln29mmk9n150718wsqlifb8d1lw9"; depends=[bbmle GUILDS MASS poilog VGAM]; }; + sae = derive2 { name="sae"; version="1.2"; sha256="1fai9lkyyssnkkdrjrrx7vzj88nglmd4bkzan3hdhrc49abclp59"; depends=[lme4 MASS]; }; sae2 = derive2 { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; }; saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.9.0"; sha256="19l41qpwspccphmgxi20p7f473lxxh8d86b0wyy5jq24phhd8awx"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; - saemix = derive2 { name="saemix"; version="2.1"; sha256="1g52vkqg2dfld7miakkmp23yf4yzc7ka0hbg2fl6ya9cq9m7wyqq"; depends=[]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; safer = derive2 { name="safer"; version="0.2.0"; sha256="0659xn8jzd5md2mm71p4036ljrfvlhkfshsgidx7l2k9ig532059"; depends=[assertthat base64enc sodium]; }; - safi = derive2 { name="safi"; version="1.0"; sha256="1km58w57kdmyfj4a97zhnjcka4q4pxm8r2br01qq2niaihpbzp98"; depends=[]; }; salesforcer = derive2 { name="salesforcer"; version="0.1.2"; sha256="02a4xzwphy5zfkd0qza6cm2n7dpf71bmc6r78gj17w4amrp3k5y5"; depends=[dplyr httr jsonlite lubridate purrr readr XML xml2]; }; + sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; samon = derive2 { name="samon"; version="4.0.0"; sha256="0pvv93ahh0i69ncc3sic9481wd5rv5dfxysxyzkl61ds3yvrr09v"; depends=[]; }; sampSurf = derive2 { name="sampSurf"; version="0.7-4"; sha256="0azs8d1d4cp5vzrlzpn2lbqmbha6rxq109apg6hr2hf7i81g19d7"; depends=[boot lattice latticeExtra raster rasterVis sp]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.2-0"; sha256="1s3p5fvvxkjkm6vjpxi3rw8ncbmyvqpfb0gghcvf2sspdyzam1s2"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; + sampler = derive2 { name="sampler"; version="0.2.0"; sha256="00c5blf8gfsj8ksf3jwksg3pkh7m39mk23r8v9lkqcp1y91z5p0i"; depends=[dplyr reshape splitstackshape tidyr]; }; samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; }; samplesize4surveys = derive2 { name="samplesize4surveys"; version="3.1.2.400"; sha256="16q8pird6ic7001i3gkwqb2rlak9l853bf2m1y9njmdprsjs82yl"; depends=[TeachingSampling timeDate]; }; samplesizeCMH = derive2 { name="samplesizeCMH"; version="0.0.0"; sha256="0gdywqmylid4fkz5syzf1wgcan71whhm9gjylmsg4p05hlwvpv1d"; depends=[]; }; @@ -10793,18 +10956,19 @@ in with self; { sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; satellite = derive2 { name="satellite"; version="1.0.1"; sha256="1g8zzlsdvb56l2jph7i5wjgbpyx5dkwa3nv8mzmg0qyh3zd9pyi0"; depends=[plyr raster Rcpp]; }; - satscanMapper = derive2 { name="satscanMapper"; version="1.0.0"; sha256="0yjz00nnkyp6q96r3nnizvglblxqg9rprbrc7rh9bpvydps3xxiy"; depends=[foreign RColorBrewer SeerMapper sp stringr]; }; + satscanMapper = derive2 { name="satscanMapper"; version="1.0.1"; sha256="1qr7xz7qp39nylkrx3smzga7rvi2z9yws8kbpmfk13avixr4asvy"; depends=[foreign RColorBrewer SeerMapper sp stringr]; }; saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; }; saws = derive2 { name="saws"; version="0.9-6.1"; sha256="0w40j6xczqs74z1z3na4510w06px7yn55s2mw9mddd6736l56fv1"; depends=[gee]; }; - sbart = derive2 { name="sbart"; version="0.1.0"; sha256="0d74dmsxphsi548k81yihf7icay7fy5v6qxv3champw3j1fwkh3g"; depends=[LaplacesDemon msm Rcpp]; }; + sbart = derive2 { name="sbart"; version="0.1.1"; sha256="0552dbdj7rm1h7dbl34m4r4disra6x3p919d9c4719ks88i78255"; depends=[LaplacesDemon msm Rcpp]; }; sbfc = derive2 { name="sbfc"; version="1.0.1"; sha256="1xz8h1m5d5ahrz4wsy55amd5mxh3acjs5qmcn7gl6yh3pn0c8phf"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; - sbgcop = derive2 { name="sbgcop"; version="0.975"; sha256="0f47mvwbsym4khwgl0ic3pqkw3jwdah9a48qi3q93d46p2xich61"; depends=[]; }; + sbgcop = derive2 { name="sbgcop"; version="0.980"; sha256="0vmg8b4462qghlyx6hq0raf9xqvygzgwi5y0cbqcljhmbmqjrwxs"; depends=[]; }; sbioPN = derive2 { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; }; sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; - sbpiper = derive2 { name="sbpiper"; version="1.6.0"; sha256="00i6wp893rsmm688si3yja7bphmz6ixidhchg2j2h50cfik9q18h"; depends=[colorRamps data_table factoextra FactoMineR ggplot2 Hmisc reshape2 scales stringr]; }; + sbpiper = derive2 { name="sbpiper"; version="1.9.0"; sha256="0pjq88ixk494wlz4nh5anbsn59mmh9wg564qh3vzwwqgxf1k61cg"; depends=[colorRamps data_table factoextra FactoMineR ggplot2 Hmisc reshape2 scales stringr]; }; sbrl = derive2 { name="sbrl"; version="1.2"; sha256="1d0f2mlzzcghhvqagrr954qa69b5v47milw3iazxihh8q1qlird2"; depends=[arules Rcpp]; }; sbtools = derive2 { name="sbtools"; version="1.1.6"; sha256="1wvd7xbkfyx88bi1vz30c6jb20fgsrcgpvkw4g4ym0966vhv1ca1"; depends=[curl httr jsonlite stringr]; }; + scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; scaRabee = derive2 { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; }; scagnostics = derive2 { name="scagnostics"; version="0.2-4.1"; sha256="1azg1xlid63l9mcyns9yyl3a3hykbl0sl0h5jhyvzjzahfyanq53"; depends=[rJava]; }; scaleboot = derive2 { name="scaleboot"; version="0.3-4"; sha256="16shdj4b8pbdbphqzw7r5xzx6k2qfkr729inv21gkp9qcp4h0vrm"; depends=[mvtnorm pvclust]; }; @@ -10814,7 +10978,7 @@ in with self; { scam = derive2 { name="scam"; version="1.2-2"; sha256="04w0y2l4h3xddb6mzyhf0mcx6kbphrmjyfc59cqw9z88sssfrmm7"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.20"; sha256="1xyng9dlfmp7n2h91n4xy9lx3jm205gjiizdqk1yj1qw8mmahvqc"; depends=[nlme]; }; scanstatistics = derive2 { name="scanstatistics"; version="1.0.1"; sha256="147fhq34vqkq50bw0g3a112048s5jaxxcwm3iv5wykp8zl45msmz"; depends=[dplyr emdbook ismev magrittr plyr purrr Rcpp RcppArmadillo reliaR sets tibble tidyr]; }; - scape = derive2 { name="scape"; version="2.3-1"; sha256="0maccnkhn7wf6brwnb5b7nh2yx3afx0h7kji2475mvg19909mddq"; depends=[coda Hmisc lattice]; }; + scape = derive2 { name="scape"; version="2.3-2"; sha256="1i3k37r7lisrj1pblni5xn76kf6py52s4yd51fm78c3286yfaasf"; depends=[coda Hmisc lattice]; }; scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; scatterD3 = derive2 { name="scatterD3"; version="0.8.2"; sha256="1cfh060ffwxy33b1f7n8mba1sbbwgx28mqn08im16dqbphkcmx1z"; depends=[digest ellipse htmlwidgets]; }; @@ -10825,9 +10989,11 @@ in with self; { scdhlm = derive2 { name="scdhlm"; version="0.3.1"; sha256="1b5x4kqvmkpb8wbgfhnwqakisw6hfnvama2bsnd8kvw4alfanxhm"; depends=[nlme]; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; schoRsch = derive2 { name="schoRsch"; version="1.4"; sha256="19k34i74ira71v0r5gz9rfnbadnjzi0wpxcm4zqqn7y6jpmfbd11"; depends=[]; }; - scholar = derive2 { name="scholar"; version="0.1.4"; sha256="088clkpllpjv9rjb45v46dga4ig11ifvfyclgfgcgqvxy5cn92jr"; depends=[dplyr httr R_cache rvest stringr xml2]; }; + schoenberg = derive2 { name="schoenberg"; version="2.0.2"; sha256="17pbw9266r9lv9blygmvq9285kcrcy07jaqrj3zfa2pg0zyvhjvm"; depends=[crayon]; }; + scholar = derive2 { name="scholar"; version="0.1.7"; sha256="142iwrips1589fa0g1178a6s1cz4dfcv9b0qs570q6b6ccfjxi6r"; depends=[dplyr ggplot2 ggraph httr R_cache rvest stringr tidygraph xml2]; }; schoolmath = derive2 { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; - schumaker = derive2 { name="schumaker"; version="1.0"; sha256="0qsbpza1x6kjs4jizg9fvhg0q5s05b5s6jv7r4fjajq9552dc83c"; depends=[]; }; + schumaker = derive2 { name="schumaker"; version="1.1"; sha256="09ggzhi60lzqwmc344h6f31zdz0b22mzvj0jpfpdp9lllqb25amf"; depends=[]; }; + scico = derive2 { name="scico"; version="1.0.0"; sha256="1z1w4j84h5rxa7s9ccjw7ygad85sm6km2l09rba1gad8bp0pfxmf"; depends=[]; }; scidb = derive2 { name="scidb"; version="2.0.0"; sha256="079akdsxxjnca5jsv0grw1c2nd3dl368xhy4mzm94mh5j6ghi57l"; depends=[bit64 curl data_table digest openssl]; }; scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; scifigure = derive2 { name="scifigure"; version="0.1.1"; sha256="0wfvg0c9hbdc3ipsnq6nkf7k9hf8yl27aqg012nqk9ynlwp9qa56"; depends=[]; }; @@ -10835,54 +11001,56 @@ in with self; { sciplot = derive2 { name="sciplot"; version="1.1-1"; sha256="1ydwx9kh778z3x7s3i6gqinqi6bmsf6bslaf0mgszj0nrgcmj6y3"; depends=[]; }; sclero = derive2 { name="sclero"; version="0.2"; sha256="1vqysby822s958msnwcqmz78193vrgmpf6si1jnfb9cj90hh7wgg"; depends=[plyr RImageJROI spatstat]; }; scmamp = derive2 { name="scmamp"; version="0.2.55"; sha256="17qhj9l1akxachaimy9d5rls8adph8aalj3qr6ckip29a8ma9gf7"; depends=[ggplot2 graph reshape2 Rgraphviz]; }; + scopr = derive2 { name="scopr"; version="0.3.2"; sha256="0wssxfhkgpqzw5gbqbidawj7wizwcbra8inrxvnmsjxq0fhhzazy"; depends=[behavr data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.1.6"; sha256="1k5vcjd574i493wazckyg6a0b4pf9b833rqppq444lwvkag7qn2q"; depends=[data_table doParallel foreach ggplot2 gridExtra]; }; + scorecard = derive2 { name="scorecard"; version="0.1.8"; sha256="04zjlpchdbbm40n12am5094ha36bdiycbq5vzbh0vc3kmc6xhjp1"; depends=[data_table doParallel foreach ggplot2 gridExtra]; }; + scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.0.9"; sha256="1hnz9dgx5fxbhh54psalrr50n22vc250v2xxxl49j09q26xh37kl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorer = derive2 { name="scorer"; version="0.2.0"; sha256="1mc4hxcrqzh4dmz5fy40740bnrp4fxia81fj3cdw9382p67ivhim"; depends=[Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; scoringRules = derive2 { name="scoringRules"; version="0.9.4"; sha256="0m8050qqb3j0miwfbadp6lmd2q5vicsqn4waw4jszz52fhb8mv27"; depends=[MASS Rcpp RcppArmadillo]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; scpm = derive2 { name="scpm"; version="1.0-2"; sha256="0jrr90lcalchfqmq5c8ja7ws88rpri3gjdc5z4jfpazn2vznx26n"; depends=[geoR interp lattice MASS Matrix mvtnorm RandomFields rgl]; }; - scraEP = derive2 { name="scraEP"; version="1.0"; sha256="1pmab2nhymb7vjfg7vysqn2cs9apdkwxgi55qn8kjg2g5r0098p7"; depends=[RCurl XML]; }; + scraEP = derive2 { name="scraEP"; version="1.1"; sha256="0dimvdjlgaymjmd3gf60hxcavpr58bpffrfhlksnrfzbb7an65dd"; depends=[data_table RCurl XML]; }; scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; }; scrime = derive2 { name="scrime"; version="1.3.3"; sha256="1vp7ai10m0f3s0hywyqh0yllxj6z6p795zqpr6vp58fh6yq20x73"; depends=[]; }; scriptName = derive2 { name="scriptName"; version="1.0.0"; sha256="0jpr9x5hf45cik5zxqw0j3vkvbk04a7ck2crvb2472hrv7s9al55"; depends=[purrr rlang]; }; scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; }; scriptexec = derive2 { name="scriptexec"; version="0.2.1"; sha256="09gaccqadb51ia66xk9vi3p9472s82bg6v8i6ba390g04yipbipi"; depends=[]; }; - scrm = derive2 { name="scrm"; version="1.7.2-1"; sha256="123rxx1a13fbv975hp9f9rjcigp8vfai7679wbn9dlyvph5nivaz"; depends=[Rcpp]; }; + scrm = derive2 { name="scrm"; version="1.7.2-4"; sha256="1fj0204hc0yvahg3plz3ia9kwa93mimk721mf2dljwdnj46lb067"; depends=[Rcpp]; }; scrubr = derive2 { name="scrubr"; version="0.1.1"; sha256="0dqsk6vvc79qmjcr1gdksqzbd064nkyqfj2mxg6z7aifqgxs8zzz"; depends=[lazyeval magrittr Matrix qlcMatrix]; }; scs = derive2 { name="scs"; version="1.1-1"; sha256="1qx8b73g5v7mjx85lx5bln6j6i9r7m238i7hm8adr2jrbl33532y"; depends=[Matrix]; }; scuba = derive2 { name="scuba"; version="1.9-1"; sha256="1b92b6p9dn54rmcaw2ng41pvvvkmrzgg12d6zcr3yh8qgi89pvdi"; depends=[]; }; - sdPrior = derive2 { name="sdPrior"; version="0.3"; sha256="0d3w75p3r2h07xhp7fj4si1y4sav8vs0lq6h2h4fn4f2inn3l0vl"; depends=[caTools GB2 MASS]; }; + sdPrior = derive2 { name="sdPrior"; version="0.5"; sha256="1l086a4ghx36fi951z968mpqdjpd64ilqvim6hcm05pl8dj7xcva"; depends=[BayesX caTools doParallel GB2 MASS mgcv mvtnorm pscl rsvd]; }; sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; - sdcMicro = derive2 { name="sdcMicro"; version="5.2.0"; sha256="1kfws4y59x7blvv8ix1xvwi92ccfsjnjlifs89jj18wjlb2khjsw"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS VIM xtable]; }; - sdcTable = derive2 { name="sdcTable"; version="0.22.8"; sha256="134a0g1v5w9airckn1bqp4k7hv2dcl5kmb1hx78nw5s8h92y3gkc"; depends=[data_table lpSolveAPI Rcpp Rglpk slam stringr]; }; + sdcMicro = derive2 { name="sdcMicro"; version="5.3.0"; sha256="0n2pbwm344iw3zm0nf6ybx51hf79jhjzd2780c57n71jl2ybxzpk"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS VIM xtable]; }; + sdcTable = derive2 { name="sdcTable"; version="0.23"; sha256="00zh55zpi6y5mrhyzxj1r9f2r1axikgy0dimxv7978sasxsm3hnm"; depends=[data_table data_tree knitr lpSolveAPI Rcpp Rglpk rlang slam stringr]; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; - sdef = derive2 { name="sdef"; version="1.6"; sha256="1y1l5fl7lh636kyvc2hwssdnifl055nrz3riplj4qqw88lkm1mk8"; depends=[]; }; + sdef = derive2 { name="sdef"; version="1.7"; sha256="0x2b8shp02ik0dd11wi3jcrl9h9m963fnkfy47fwwhav9x6jg0jf"; depends=[]; }; sdm = derive2 { name="sdm"; version="1.0-46"; sha256="14z8336yxja1j7mx8xszqqi6s24nk6r5bycmw8h01wvq4rqgxi4g"; depends=[raster sp]; }; sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.6"; sha256="1kbgv5x5ilzccafl20x86fi9f7jqxnccvb8k7dy8q41s9n36qwfs"; depends=[R_utils raster rgdal]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdnet = derive2 { name="sdnet"; version="2.3.8"; sha256="10c962wbzgl2zpz7yx5kpryldbbq76qrd5pnz4rlmbaa9kfg08s5"; depends=[]; }; - sdols = derive2 { name="sdols"; version="1.4"; sha256="1wamzpw8q55a5zkvk21c3hilr97lxz1yq3b0dcfgcdvcqap2i14w"; depends=[commonsMath rscala]; }; + sdols = derive2 { name="sdols"; version="1.6"; sha256="083yvlqgr5151dy0570jkhns12nyj2na2gk39vf8gv0gyw72c3yk"; depends=[commonsMath rscala]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-5"; sha256="1c6mipq8sh8347i7m7dh47f69fr21xkrsk8yjgsdvcy41h8zijmf"; depends=[numDeriv PolynomF rootSolve]; }; sdpt3r = derive2 { name="sdpt3r"; version="0.1"; sha256="06mw1h6c8gkhi3vhal17h7px3bb277xz15k2ryqjwc7agzwhmv8c"; depends=[Matrix]; }; sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive2 { name="sdwd"; version="1.0.2"; sha256="0l0w4jn2p9b7acp8gmlv4w8n662l397kbrm4glslik0vnmjv151w"; depends=[Matrix]; }; seaaroundus = derive2 { name="seaaroundus"; version="1.2.0"; sha256="09nyypzylb0y04ssd9ak2cw8wpy6a3nmabg9p7jrc8qz54wl6z4q"; depends=[crul ggplot2 jsonlite maps rgdal scales sp wicket]; }; - seacarb = derive2 { name="seacarb"; version="3.2.6"; sha256="1036hrmgv7xn0khddbfdg0p9d4hmhhxxb3fd7fysjmzlk7k7naqb"; depends=[gsw oce]; }; + seacarb = derive2 { name="seacarb"; version="3.2.8"; sha256="02l10jgjw79vf31c8qfzfpyrfhlc0j2dibs4pkk5y7visggzr47p"; depends=[gsw oce]; }; sealasso = derive2 { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; - sealr = derive2 { name="sealr"; version="0.1.0"; sha256="1ky0m120bf4mmb0c99ywrzr2jjx3cljscf9vnsnp54rkabh1q2mm"; depends=[clipr clisymbols digest dplyr glue magrittr purrr rlang rstudioapi styler tibble tidyr]; }; + sealr = derive2 { name="sealr"; version="0.1.1"; sha256="1y31k4y3v1mvjagsbr4647hdn8rk4nfdyixidl3myq0qhnaf0x6w"; depends=[clipr clisymbols digest dplyr glue magrittr purrr rlang rstudioapi styler tibble tidyr]; }; searchConsoleR = derive2 { name="searchConsoleR"; version="0.3.0"; sha256="1z8bdlxq2sk8bcg164wy0yrmsx0inf0aj5ya2pybvadss8wr0qlr"; depends=[googleAuthR stringr]; }; searchable = derive2 { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; }; - searcher = derive2 { name="searcher"; version="0.0.2"; sha256="0lj7zyqldr8m7ky20frzaxmf9by2h3p89ibwsa7dyrf378swkwwj"; depends=[]; }; - seas = derive2 { name="seas"; version="0.4-3"; sha256="1n0acg6fvaym4nx1ihw0vmb79csds0k4x9427qmcyxbl9hxxmllp"; depends=[]; }; - season = derive2 { name="season"; version="0.3-5"; sha256="08f382kq51r5g9p5hsnjf17dwivhx1vfgmmwp1vzmbqx1drlqkzx"; depends=[coda ggplot2 MASS mgcv survival]; }; + searcher = derive2 { name="searcher"; version="0.0.3"; sha256="004k757hn5y80k7kim3049n3mjrsimqpzdz5fis2ggxbdwwf1bs1"; depends=[]; }; + seas = derive2 { name="seas"; version="0.5-2"; sha256="0hn4d5dc01zyycd7l3vj1sx6bq668n7fzffw9ypaa5l20fizs0ay"; depends=[MASS]; }; + season = derive2 { name="season"; version="0.3.6"; sha256="1q0xih4vj0pv1xcgdi2d6vl56gd1gmzfbyc0aklpjz9iaxmxgb8f"; depends=[coda ggplot2 MASS mgcv survival]; }; seasonal = derive2 { name="seasonal"; version="1.6.1"; sha256="1nvavn84f2zb0f6n352br52wcrcmnxv6vprzcpymrnzik7pyp8y6"; depends=[x13binary]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; }; - secr = derive2 { name="secr"; version="3.1.5"; sha256="1sxapy8h1kx4fk405j6nanvdl5g9gz4arg0v15cmhb4plij3mg3c"; depends=[abind MASS mgcv nlme raster sp stringr]; }; + secr = derive2 { name="secr"; version="3.1.6"; sha256="0mf0p7asx2shf630j5xd7ym21f76a0af536wzs9rdbhq0xychv6z"; depends=[abind MASS mgcv nlme raster sp stringr]; }; secrdesign = derive2 { name="secrdesign"; version="2.5.4"; sha256="1kbqgdjpyns11ag16rgw9n6mvmjgdypk9lv3yzwf4kynds46wbbk"; depends=[abind secr]; }; secret = derive2 { name="secret"; version="1.0.0"; sha256="09b28f7ndc167bbanbdydralykq718fixnrgs5xr9d3fbdhz1vdl"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrlinear = derive2 { name="secrlinear"; version="1.1.1"; sha256="0jcvraypkss1gphh4cjb0b4v9460fj4dw80yd057ah11p9942ggs"; depends=[igraph maptools MASS rgdal secr sp]; }; @@ -10896,13 +11064,12 @@ in with self; { segclust2d = derive2 { name="segclust2d"; version="0.1.0"; sha256="0kymw36cvakx84c96npkbnsvv0a1s82773ib5c802ybvkb2r1k9p"; depends=[dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 scales zoo]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmented = derive2 { name="segmented"; version="0.5-3.0"; sha256="0nrik5fyq59hwiwjcpbi4p5yfavgfjq6wyrynhkrbm4k6v1g1wlq"; depends=[]; }; - segregation = derive2 { name="segregation"; version="0.0.1"; sha256="0avapyr8h0c4hl0xchazr5gig9857y25xx4js788liy679iczwf7"; depends=[data_table]; }; + segregation = derive2 { name="segregation"; version="0.1.0"; sha256="17dhgk56j6zxqgfq08vig68lkhxhbgbbqhshqh5051m1k4ivjdyz"; depends=[data_table]; }; seismic = derive2 { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; seismicRoll = derive2 { name="seismicRoll"; version="1.1.2"; sha256="183lx9lgmi06lv1l4gbmlmblfgjzhph4aavdnxrykpp6122hsq61"; depends=[Rcpp]; }; sejmRP = derive2 { name="sejmRP"; version="1.3.4"; sha256="1j3sadbp12fip3n96s0hx1sg4kzwx8z01p1c905kv8gffhkz9bh0"; depends=[cluster DBI dplyr factoextra RPostgreSQL rvest stringi tidyr XML xml2]; }; selectMeta = derive2 { name="selectMeta"; version="1.0.8"; sha256="0i0wzx5ggd60y26lnn4qk4n8h27ahll9732026ppks1djx14cdy0"; depends=[DEoptim]; }; selectapref = derive2 { name="selectapref"; version="0.1.0"; sha256="09kqrr814261mvpzc9x7v0fcnd4wf8fcl52jsx6snf1qp336hw26"; depends=[]; }; - selection = derive2 { name="selection"; version="1.0"; sha256="1w2mzb16frcbh55icc5g8ai3hri9j6dhp7h0kc96iaspphnfw4n8"; depends=[fifer norm]; }; selectiongain = derive2 { name="selectiongain"; version="2.0.591"; sha256="11gd9xdn3jl3mg3c9ykw8bqvcxhihn19iqsy8dl8bacijjv84bva"; depends=[mvtnorm]; }; selectiveInference = derive2 { name="selectiveInference"; version="1.2.4"; sha256="1k7lnf6fplnxp3giwinldg9g5spi21infln21k413dv3wkksk71f"; depends=[glmnet intervals survival]; }; selectr = derive2 { name="selectr"; version="0.4-1"; sha256="1jp27rxks4w29l47k42869hp8hnkzq2rnvsqbr44wd19fqb2zm4b"; depends=[R6 stringr]; }; @@ -10915,37 +11082,36 @@ in with self; { semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive2 { name="semPlot"; version="1.1"; sha256="0fzz580an7mmq6vycxbcvfdqbii0qz0nghlidb6in05j8dppsnsn"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem semTools XML]; }; semPower = derive2 { name="semPower"; version="1.0.0"; sha256="0wciz5qrd40q4mxq96pibnya11ac42n37c9xhjd4zfhznhjz06bb"; depends=[]; }; - semTools = derive2 { name="semTools"; version="0.4-14"; sha256="1j1chman14i908c009lf0jgdmrrb8avgp8nif1i9wlj6vgif890c"; depends=[lavaan]; }; + semTools = derive2 { name="semTools"; version="0.5-0"; sha256="0akan511aj8qkn37aiw200nvyxwdqrz022ll16av2n7qsp9xdynh"; depends=[lavaan]; }; + semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.1.1"; sha256="0fd5qnw5jcmf5akkv59z1zjizsczwlmnpkfd8bfminhpa89sgp1y"; depends=[shiny shiny_semantic]; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; - semds = derive2 { name="semds"; version="0.9-2"; sha256="0ig8b7ii1c8av0il904b71lzr8lqdiibwf16yj5dp8n4xc80bryh"; depends=[minpack_lm pracma]; }; + semds = derive2 { name="semds"; version="0.9-4"; sha256="14x6xqv15fgsxhsyxw77i3slpdaax8kcq9sx7ipwp1b83fmmqv1z"; depends=[minpack_lm pracma]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.2.5"; sha256="1m8kwjhqjpqjzz22caiwpb4nb70d8y0ssf9j4rfyyh530x2q2k1m"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; - seminr = derive2 { name="seminr"; version="0.4.0"; sha256="1vgmakj94s0l400wmk31hq8xl75dnhpbmdn85px6lsm1jhp6l8i5"; depends=[]; }; - semisupKernelPCA = derive2 { name="semisupKernelPCA"; version="0.1.5"; sha256="1v8wdq63b1gqicj8c9a24k0w7cc0bkg0mnc9z5mklsfcl7g0g6k9"; depends=[datautils irlba]; }; - semsfa = derive2 { name="semsfa"; version="1.0"; sha256="1x227rigjk9glq5x9lp6xxcf3y9i73rv3mrj7lkr2ycnsx8zz57h"; depends=[doParallel foreach iterators mgcv moments np]; }; + seminr = derive2 { name="seminr"; version="0.5.0"; sha256="0f8k1v2g82axhaw5a370f95h9q07qar1by795wfc3yil7pn94xmy"; depends=[]; }; + semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; semtree = derive2 { name="semtree"; version="0.9.12"; sha256="07i82f3bnn9x7gy8gsjyd99mzcq9pk3xqb3479d338vpky2afv43"; depends=[bitops cluster digest OpenMx plotrix rpart rpart_plot sets]; }; semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sendplot = derive2 { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; }; - sensR = derive2 { name="sensR"; version="1.5-0"; sha256="01rs0kiv73rqrlgzwf7hnprb029i5sq1h1qjb9q3879jxj4823pf"; depends=[MASS multcomp numDeriv]; }; - sensiPhy = derive2 { name="sensiPhy"; version="0.8.1"; sha256="0pqwxs36g31qvy8ygx5grsx782magwsmh3v2qkv3rn2ycwy3brgp"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; + sensR = derive2 { name="sensR"; version="1.5-1"; sha256="0hqnk6gvlkl9harz7rh5ikbp0s0vjwi63gxixqjfhkyk02ilaa3z"; depends=[MASS multcomp numDeriv]; }; + sensiPhy = derive2 { name="sensiPhy"; version="0.8.2"; sha256="19sbcl3873r2jayxpr83n8w36br12c6p31y830gzi7a4q0cxaxxq"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; sensitivity = derive2 { name="sensitivity"; version="1.15.0"; sha256="02vqs1pqzivxpg2ql3wi0530cshdkz7hxvablpd1dzhvjnindknm"; depends=[boot]; }; sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; }; sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; sensitivityfull = derive2 { name="sensitivityfull"; version="1.5.6"; sha256="0g2gc4rms6gd34d23kxj50pjh0yq1h6yiybj4dxwyf6i2652irhq"; depends=[]; }; sensitivitymult = derive2 { name="sensitivitymult"; version="1.0.2"; sha256="19pyq6c7pvr3zkz3dz5p2hhfcvwm0im0bwaw4yhhgin4kqfnfjd5"; depends=[]; }; - sensitivitymv = derive2 { name="sensitivitymv"; version="1.3"; sha256="1bxf85q91smnsl2lsig43vk0c63c805d8ry1xh3w6q675djj14ad"; depends=[]; }; + sensitivitymv = derive2 { name="sensitivitymv"; version="1.4.3"; sha256="1ga8mf92niiv1z3g3kv5ha5xdd1089aaqp19dz68kv8a396vhy1j"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="1.1"; sha256="1bknnfkkqgmchabcjdfikm37sn5k41ar8lpnjw58i8qh7yzq237i"; depends=[]; }; - sensors4plumes = derive2 { name="sensors4plumes"; version="0.9"; sha256="1fyf020bl6p9wdvnsfkmdlllhdwj3l4h9h2paq9dwd7hsr7av48p"; depends=[automap conf_design emdist FNN genalg gstat lattice raster rgdal sp]; }; + sensors4plumes = derive2 { name="sensors4plumes"; version="0.9.3"; sha256="1r9sddnlxpjck7rhm2w7z8jak7wmrxg3d62dydc5dqcqhgp54r6p"; depends=[automap conf_design emdist FNN genalg gstat lattice raster rgdal sp]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; - sentimentr = derive2 { name="sentimentr"; version="2.2.3"; sha256="0f9hwiyja9cgig0ja9miqzsfwpn25bfa8xrwfm34v1n2l3v2gbxv"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; - sentometrics = derive2 { name="sentometrics"; version="0.3.5"; sha256="0628vnv3wga21z5dvhxs3alj194s43xgaasifpbfm2gmfzma6lb4"; depends=[abind caret data_table foreach ggplot2 ggthemes glmnet ISOweek MCS quanteda Rcpp RcppArmadillo RcppRoll stringi zoo]; }; - seoR = derive2 { name="seoR"; version="0.1.0"; sha256="0aa74a9vi176ap4ap44sjm8lm3025dss067sm5lgc4b73a6ph75p"; depends=[digest dplyr httr igraph jsonlite RCurl readr robotstxt rvest stringr XML xml2]; }; + sentimentr = derive2 { name="sentimentr"; version="2.3.2"; sha256="14f5zac5ywz864fbcia05kdlxx4bgvasc1l1abcrk34i2jvh8zwl"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; + sentometrics = derive2 { name="sentometrics"; version="0.4"; sha256="0mr064qb1wr0bpbrx1bl3imxy95ybxlx4bxpy25qcz07v5nynk5l"; depends=[abind caret data_table doParallel foreach ggplot2 ggthemes glmnet ISOweek MCS quanteda Rcpp RcppArmadillo RcppRoll stringi zoo]; }; separationplot = derive2 { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; }; - seplyr = derive2 { name="seplyr"; version="0.5.5"; sha256="1hb0df1mlqv8fivdnqg5lw7gj92hscrxw122isgixkqm74n0vc5y"; depends=[dplyr rlang wrapr]; }; + seplyr = derive2 { name="seplyr"; version="0.5.8"; sha256="0ca9mg2fx3jdgybbiq2a22q5p6613awxwysrpgdbs5lrqdm1ywim"; depends=[dplyr rlang tidyr wrapr]; }; seqCBS = derive2 { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; }; - seqHMM = derive2 { name="seqHMM"; version="1.0.8"; sha256="1zr70ym32isav13wsb7zv4gv3bn04qi0dn5k0fqjbdcw36m5hfi8"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; + seqHMM = derive2 { name="seqHMM"; version="1.0.8-1"; sha256="18rpmncm5xn34l336kzg0pby59pw16s5cdv3h946yhrcjigz0kkn"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqICP = derive2 { name="seqICP"; version="1.1"; sha256="1dfhl7g47icjw38p9c0hyvnn3pwzw7pndywk22vgcyfhiz23xjcp"; depends=[dHSIC mgcv]; }; seqMeta = derive2 { name="seqMeta"; version="1.6.7"; sha256="11dscdrlnk5jzg0q2g59qis4xjr4xs86bi463jmhq53n9gsb4i1l"; depends=[CompQuadForm coxme Matrix survival]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; @@ -10959,9 +11125,10 @@ in with self; { sergeant = derive2 { name="sergeant"; version="0.5.2"; sha256="02chkyvmwd4nimw62v82rfbid1xqw5b1335na44pdi675g904250"; depends=[DBI dbplyr dplyr htmltools httr jsonlite purrr readr scales]; }; serial = derive2 { name="serial"; version="1.3"; sha256="1ibwd8xmkd0pwdhivm6h3yd3rsi28mai5n7qcs1bq2mx8hb5lg7f"; depends=[]; }; seriation = derive2 { name="seriation"; version="1.2-3"; sha256="1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; }; - seroincidence = derive2 { name="seroincidence"; version="1.0.5"; sha256="07lphrp7r3i87633q8g6svk2mxbsvq4blrf8gnm0p99hkmz8wgg9"; depends=[]; }; - serrsBayes = derive2 { name="serrsBayes"; version="0.3-12"; sha256="137pm5s7w6fxaalyc7hzvdkg7rayjhqw2dnb2q8q9ijp0v9wx7mr"; depends=[MASS Matrix Rcpp RcppEigen truncnorm]; }; - servr = derive2 { name="servr"; version="0.9"; sha256="0bs0i5mjfzxfshqz8i30nhn7kvgwly4fqn5bfq6dqfdrn7biai2x"; depends=[httpuv jsonlite mime xfun]; }; + serieslcb = derive2 { name="serieslcb"; version="0.1.0"; sha256="09mg8x738q7p16z95rrfj9fzmsrl34fvx9nsz1ndkp4h6cwf679l"; depends=[gplots shiny]; }; + seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; }; + serrsBayes = derive2 { name="serrsBayes"; version="0.3-13"; sha256="1s38mva66l684i0wrk65r3gdafjlih7bglsmi9fr44yk0wavygrm"; depends=[MASS Matrix Rcpp RcppEigen truncnorm]; }; + servr = derive2 { name="servr"; version="0.10"; sha256="0yz3igqsiyqnjj1ngh199zicg3spx4kbmvl0wc8i8xahk6l9g06v"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; sessioninfo = derive2 { name="sessioninfo"; version="1.0.0"; sha256="00g3lbvk1cjjzckl70fn5n3579qb301im4lbm3cip5c2v8k283dk"; depends=[clisymbols withr]; }; @@ -10970,7 +11137,7 @@ in with self; { setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.4"; sha256="092sv6nccm6p2d695l9w0zfi2xgymk12c8p8lhl9nb86mxrb3nry"; depends=[]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; - sf = derive2 { name="sf"; version="0.6-1"; sha256="1hqsjbbasqb8vxswl7cwwjgvjiki71yb8fr301lzfxagkanys790"; depends=[classInt DBI magrittr Rcpp units]; }; + sf = derive2 { name="sf"; version="0.6-3"; sha256="0c6ayyclhlna2jnpwi6glafw7ip7ar0ycsmms79x451mdqb5xvja"; depends=[classInt DBI magrittr Rcpp units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; @@ -10982,53 +11149,57 @@ in with self; { sgRSEA = derive2 { name="sgRSEA"; version="0.1"; sha256="0vyypnq81l36x0j44q2l9wbf3x4krz4fzypi7vyqhaq97mkzaw5j"; depends=[]; }; sgee = derive2 { name="sgee"; version="0.6-0"; sha256="055iydainzywb1s5id5rl9i94dj5arr9b6qz15p8wps49vm2mlp3"; depends=[copula mvtnorm]; }; sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; - sglasso = derive2 { name="sglasso"; version="1.2.2"; sha256="1yk9wvg98a2l9kdaksy75av9z9iz27v5d2zpsqhabqwkwfh6wkad"; depends=[igraph Matrix]; }; + sglasso = derive2 { name="sglasso"; version="1.2.3"; sha256="1xf4jni7gybk66wp542p92jxrp4lf63ypbwsnb3av5db04bis7ll"; depends=[igraph Matrix]; }; sglg = derive2 { name="sglg"; version="0.1.3"; sha256="17w9mfb53ll8aqasl4ysnb0b7sk6cgp7s1cfvn07rg5win2swqrj"; depends=[Formula robustloggamma ssym survival]; }; sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; sgmcmc = derive2 { name="sgmcmc"; version="0.2.2"; sha256="1ga3dynhldkl98fd7fzbbhb4bryf6nyijwvxsj8i1szy4jsv8q3q"; depends=[tensorflow]; }; sgof = derive2 { name="sgof"; version="2.3"; sha256="12bpyvg5df1m2ar6frpi10zlj3dk9h61r13rzn3w5a3nyk8gljsg"; depends=[poibin]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; - shades = derive2 { name="shades"; version="1.1.0"; sha256="0ajdpwisfax96mc3w1akjlkk36b6gni1aprxqvqlwlw8bmgsmj4p"; depends=[]; }; - shadow = derive2 { name="shadow"; version="0.5.0"; sha256="0a5flgc3r5psbsig3dns4pr1fyvkhmb7gh17sb5r4vm8w202p98y"; depends=[plyr raster rgeos sp]; }; + shades = derive2 { name="shades"; version="1.2.0"; sha256="06mz09rrrjp4dkzbw6nnv6n3k80ddwzaw4pkp4127d1f4cij9pnj"; depends=[]; }; + shadow = derive2 { name="shadow"; version="0.5.3"; sha256="036jh63y3i42yfjm96yp0xp3p77v1mzj77q0vl9msjhd246l5gm8"; depends=[plyr raster rgeos sp]; }; shadowtext = derive2 { name="shadowtext"; version="0.0.2"; sha256="17ccylxnl6837cf81fwkgywjmqizmcm6mhqak10sl5apnqm5n1nl"; depends=[ggplot2]; }; - shallot = derive2 { name="shallot"; version="0.4.3"; sha256="1rxx15qma6sbi4h2iv90ym4r22lwh64z495psrxv624w1zjypbvf"; depends=[commonsMath rscala]; }; + shallot = derive2 { name="shallot"; version="0.4.4"; sha256="0bjbw8l5lzz5d6nxgwjby40fxvxrfli0wkipdf84pg4nigy84w2w"; depends=[commonsMath rscala sdols]; }; shape = derive2 { name="shape"; version="1.4.4"; sha256="0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"; depends=[]; }; shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; shapes = derive2 { name="shapes"; version="1.2.3"; sha256="1fzwpqa0paql4n652diqsqylz5r5crblfip6g6c0vszrvy7avi4q"; depends=[MASS rgl scatterplot3d]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.1"; sha256="0rgsad8idhjyjgwlzk358jlqkqf6sk7g6vl3fchkamjzxnhbb8p9"; depends=[ghyp Rcpp]; }; - sharpr2 = derive2 { name="sharpr2"; version="1.0.0.0"; sha256="018xzpl9h07cddpmr2bxm9iz50ky0ja12kybjil7ipjfn0kxavyr"; depends=[mvtnorm]; }; + sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; sharpshootR = derive2 { name="sharpshootR"; version="1.0"; sha256="1x9cava7b9lg8qpmjqlbkqmpc9a2dn8k4kl71s4himr4wzp9z4y3"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; shazam = derive2 { name="shazam"; version="0.1.9"; sha256="1dm553l1qwqajy5p13x3ms6x45ax33zh7b79iw6xx1chbrpalhmk"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress scales SDMTools seqinr stringi tidyr]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; shiftR = derive2 { name="shiftR"; version="1.4"; sha256="12mb4b5zhiq7hfkpc9hgi004hqli1kkkzdy2169svwrjv7bfifrn"; depends=[]; }; - shiny = derive2 { name="shiny"; version="1.0.5"; sha256="0hps6nlyffh685smsm9sd0rdmip0y8v7hgv6a4hqlq7kf8zmzqi0"; depends=[digest htmltools httpuv jsonlite mime R6 sourcetools xtable]; }; - shiny_semantic = derive2 { name="shiny.semantic"; version="0.1.2"; sha256="0zvd37z4d2vx2h2ypmbzbaxa617dpwdzhp3rwd6yak0avfv5h7a0"; depends=[htmltools htmlwidgets jsonlite magrittr purrr shiny]; }; - shinyAce = derive2 { name="shinyAce"; version="0.2.1"; sha256="0ycka8rsw0178q9klfid97vdn5cbyx3r778nis5s3dqipdyazdm9"; depends=[shiny]; }; + shiny = derive2 { name="shiny"; version="1.1.0"; sha256="12aw4kmf0j993fj4lpyqlyqzzn0bnniwd55w22p9pa0b3g6n9dbh"; depends=[crayon digest htmltools httpuv jsonlite later mime promises R6 rlang sourcetools xtable]; }; + shiny_semantic = derive2 { name="shiny.semantic"; version="0.2.1"; sha256="0m0f22qlmf7f2cf33myn72dm48yslqyx4kwzb96i78a3yz6a2awp"; depends=[htmltools htmlwidgets jsonlite magrittr purrr shiny]; }; + shinyAce = derive2 { name="shinyAce"; version="0.3.1"; sha256="1hqgszbiv99dibhwr21v21ll4s2hjn3ccqdicsm0z3gk77bh8iyb"; depends=[jsonlite shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.0.4"; sha256="14lvr99nfldlr101ysmpwz0zw0bjvr6b7lfm0msx57ymh6gjzg3n"; depends=[digest shiny]; }; - shinyFiles = derive2 { name="shinyFiles"; version="0.6.2"; sha256="1lphzqbzg482lv0xiamfv28n5nyjppss9zzcpx1cd5fsz0xg1282"; depends=[htmltools RJSONIO shiny]; }; + shinyFiles = derive2 { name="shinyFiles"; version="0.7.0"; sha256="1bs1dj84scg4gkrdlw1jvmnwckcjcdpzc8drwmr8h6cxk3yklijc"; depends=[htmltools jsonlite shiny]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.1.0"; sha256="1vl80vp7yslnh0dvcrpysfn5rndjavphy31y15546q7ax7d0fn6v"; depends=[dplyr DT heatmaply htmltools htmlwidgets jsonlite plotly RColorBrewer readxl shiny viridis xtable]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; - shinyLP = derive2 { name="shinyLP"; version="1.1.1"; sha256="099ca86wvjfi3ld6fnvxk65rnxr5yji28il2f9xhacmhksn3db3l"; depends=[shiny]; }; + shinyLP = derive2 { name="shinyLP"; version="1.1.2"; sha256="1sjcll10ciq6pj9h8c6ybjqp8763wc423hddlalcblxxpajf6avz"; depends=[shiny]; }; shinyRGL = derive2 { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; shinyTime = derive2 { name="shinyTime"; version="0.2.1"; sha256="0gpa6kypchvvlq71nnlilciclcrhaa488prjz46sddrsxjy09mp7"; depends=[htmltools shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; }; - shinyWidgets = derive2 { name="shinyWidgets"; version="0.4.2"; sha256="0y23p9wirrp3d9zb8cfdizsg8ijgm2sxhvhfl06yq8i1wnr8yif5"; depends=[htmltools jsonlite shiny]; }; + shinyWidgets = derive2 { name="shinyWidgets"; version="0.4.3"; sha256="070yy6vq9w97bz17nxbc2z65v05k50hr24dxfcld994bw0910ldx"; depends=[htmltools jsonlite shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; shinyalert = derive2 { name="shinyalert"; version="1.0"; sha256="0ngmpbzw6fw1gs6sv9m3xv2c9bmrxg0bs6lnvxn8hm8cwr4440xi"; depends=[digest shiny]; }; + shinyanimate = derive2 { name="shinyanimate"; version="0.1.0"; sha256="0vbzfcw4d0fvmpdn2pjbsl3najikhm6p60w5vxc0d3x7d8sfq57z"; depends=[shiny]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; shinycssloaders = derive2 { name="shinycssloaders"; version="0.2.0"; sha256="1bpzsm7m7c366sjl1qndp4m5dg2vlm68rjgdy9n1ija9xbp0r2g4"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; shinydashboard = derive2 { name="shinydashboard"; version="0.7.0"; sha256="10yqcqqcxgfqwkmscqwvvgr710im583qsqnsqkfpisjvkqp10yqb"; depends=[htmltools shiny]; }; - shinyjqui = derive2 { name="shinyjqui"; version="0.2.0"; sha256="07ijd5psywlkfrz54d4q68bwij1as4ai0360fya8ikngkwg393mj"; depends=[htmlwidgets jsonlite shiny]; }; + shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="0.5.0"; sha256="0wj388lys7jlh45il6vvln0bpjg1rr91xyypzz55hp46r8z31vl2"; depends=[htmltools shiny shinydashboard]; }; + shinyhelper = derive2 { name="shinyhelper"; version="0.3.0"; sha256="1ypd9wc0h9yfh4awjmjn952g2cfsgcyrm25zk575b17jrkjl5skj"; depends=[markdown shiny]; }; + shinyjqui = derive2 { name="shinyjqui"; version="0.3.0"; sha256="0x7pyb897apmdfpys2kc7bkaa8i4a9rlmdlmlps1n8cxj8kx3dal"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinyjs = derive2 { name="shinyjs"; version="1.0"; sha256="113zpijri0l80rlgrvqn6bxk0sdqgl79h7yhja2p76f9dc9i2sr8"; depends=[digest htmltools jsonlite shiny]; }; - shinymaterial = derive2 { name="shinymaterial"; version="0.5.2"; sha256="1xdvk8icnzc156bdn6782qgj1dgzc8v22b8qhfnxabxxgpap5nm9"; depends=[shiny]; }; - shinystan = derive2 { name="shinystan"; version="2.4.0"; sha256="18bdh2h6grlwfx6p00214p7cgzg7zfhbvnkd1dmxihp9wf4l80af"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; + shinymaterial = derive2 { name="shinymaterial"; version="0.5.3"; sha256="0lddw626mlb6vv474vv22pbjlwl1hgnjs8py3a30d84m94wg7p3z"; depends=[jsonlite shiny]; }; + shinystan = derive2 { name="shinystan"; version="2.5.0"; sha256="18alf5kiqw7y2l6m5nxxizwc2znsf9frxfsqhvgcad8hld9cbya5"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; + shinytest = derive2 { name="shinytest"; version="1.3.0"; sha256="0xgsbw72jpyjw0shg6vb8cxxw3948xhbl2sjx0d376fy2jb1rh43"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch shiny testthat webdriver withr]; }; shinythemes = derive2 { name="shinythemes"; version="1.1.1"; sha256="0i220y051dq763idh1j5zhpb5cpv3jr11jd9akmry9aadyys5pz6"; depends=[shiny]; }; shinytoastr = derive2 { name="shinytoastr"; version="2.1.1"; sha256="01j2z4gf1wxblrjayykwxdr2s8394i7k930x8g4hmrj7c9pv264n"; depends=[shiny]; }; shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; @@ -11047,40 +11218,41 @@ in with self; { sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; }; sidier = derive2 { name="sidier"; version="4.0.2"; sha256="1zzlgd20aw2asbsb3g9m5gvlmmgkai3bqrxyn48mphc2ncl4y7w0"; depends=[ape ggmap ggplot2 gridBase igraph network]; }; sidrar = derive2 { name="sidrar"; version="0.2.4"; sha256="1zwxafc4xaa4386a9jdg3gwflpdxql3f33bkqx1l2yl30x3517rw"; depends=[dplyr magrittr RCurl rjson rvest stringr tidyr xml2]; }; - sievetest = derive2 { name="sievetest"; version="1.2.2"; sha256="0mbgkf014m6bc7qg60vf065i6mvl5n4a0bvg8vb7dw531vsw2771"; depends=[]; }; + sievetest = derive2 { name="sievetest"; version="1.2.3"; sha256="17qrm7axvlr2yzp8brbibp26f8qdpqm85hc2kjzxm5zqwfvd6dfs"; depends=[]; }; sig = derive2 { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; - sigQC = derive2 { name="sigQC"; version="0.1.14"; sha256="17vgfpkbn8g3bgfxmy5wvpjkzizpzqjw5xijmzpi627ba9g8lrwh"; depends=[biclust class cluster ComplexHeatmap fmsb gplots gridGraphics KernSmooth lattice MASS mclust moments nnet RankProd]; }; + sigQC = derive2 { name="sigQC"; version="0.1.20"; sha256="1s0z5pd8183q1v5pn07zwxckafhq0rhh7fzzny7xpjs79r50l9ii"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; }; sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; - sigloc = derive2 { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[ellipse nleqslv]; }; - sigmaNet = derive2 { name="sigmaNet"; version="1.0.3"; sha256="0b9p5kgcbpzb83s0vgmfwmh15lvsfz5q0yk5wl16rxyiqqg2nxag"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; - sigmoid = derive2 { name="sigmoid"; version="0.2.1"; sha256="1myphx64irwllf3p9aifmg37mg4jg58ik7f42zilg5qsjfhj37zf"; depends=[]; }; + sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; + sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-6"; sha256="1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.4"; sha256="1plyvx0pdid4zydxjwph6v96c8ilzgn55vcdszkslp3a4s2sns65"; depends=[Rcpp seqinr shiny]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; sigora = derive2 { name="sigora"; version="2.0.1"; sha256="1sgjafr2f7carwnvp0vsvp80jn2bzwlkay38ch63qk9gapsh4imh"; depends=[]; }; - sigr = derive2 { name="sigr"; version="0.2.4"; sha256="11dxv99yibp6cj3jg8qmy8r4csr2lyww6zrdy4a2zgmrzl02fhlc"; depends=[pwr]; }; + sigr = derive2 { name="sigr"; version="0.2.7"; sha256="0fdqlwblinb2dqlmcr7p679ppjh73aykgsmjffyaz0liiyk0zsc7"; depends=[wrapr]; }; siland = derive2 { name="siland"; version="1.0"; sha256="0zqwslg0vak22q475azwank81wr4kfx33h21w84lsg7iihrb08nv"; depends=[lme4 raster rgdal sp]; }; sim1000G = derive2 { name="sim1000G"; version="1.39"; sha256="1qxl7lsdsd4skn6x8iw7jx60ly0rwsj27yh5yiqmhxa34jpyjg0m"; depends=[hapsim MASS readr stringr]; }; simEd = derive2 { name="simEd"; version="1.0.3"; sha256="1yq0qblrz0zddx682rzwdaa0k0r223i123la7wbp73spnn38g4br"; depends=[rstream]; }; simFrame = derive2 { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; + simIReff = derive2 { name="simIReff"; version="1.0"; sha256="0yi43splda8chnh4bq5x6chbrl5c0y9sv1k2m31763da0czayall"; depends=[bde extraDistr ks MASS np rvinecopulib truncnorm]; }; simLife = derive2 { name="simLife"; version="0.3"; sha256="0bqhixr4zg7mwgxdsjk0h5a82dyfkhiv9xafw43w2bpnmyxywdia"; depends=[splancs unfoldr]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; simPATHy = derive2 { name="simPATHy"; version="0.2"; sha256="0ai5wmjz8k0glbwkclgg3m3ncsjghja4iys2mn1psn3r8gxk79yc"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; simPH = derive2 { name="simPH"; version="1.3.10"; sha256="0br32m28ynmhr4xal69bsv925rlmih898rk5bskn1s6bhsshalqq"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; - simPop = derive2 { name="simPop"; version="1.1.0"; sha256="0zaf12lzca73nn0jy1gikzzwrsg046sgsfn9ck65jzdwh9xj9020"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach laeken lattice MASS nnet party plyr ranger Rcpp RcppArmadillo vcd VIM wrswoR]; }; + simPop = derive2 { name="simPop"; version="1.1.1"; sha256="10dsr1rbglv5kwm5q05dxv4396wxwzhlf0851ynndlcbyxl8rvc0"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach laeken lattice MASS nnet party plyr ranger Rcpp RcppArmadillo vcd VIM wrswoR]; }; simSummary = derive2 { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind gdata svUnit]; }; simTool = derive2 { name="simTool"; version="1.1.0"; sha256="121nv0s14jzxgcmj2fsj1k0msziknwbix2a49f7igic2l8yv869p"; depends=[dplyr plyr purrr reshape tibble tidyr]; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; simcausal = derive2 { name="simcausal"; version="0.5.4"; sha256="19mqabxqz2mvfhslbln5vsnlrnmgcfmgp7ypf5k2yd03755b0k4b"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; simctest = derive2 { name="simctest"; version="2.5"; sha256="038ipxww0n09sh8al5isbm1fikr8kazwxn9cj2d0wgm6cdpy681n"; depends=[]; }; - simecol = derive2 { name="simecol"; version="0.8-10"; sha256="027x19w4l85129cb71c5cp9y8msg3nkq5cy4cfrlw2dl5zky4j5j"; depends=[deSolve minqa]; }; + simdistr = derive2 { name="simdistr"; version="1.0.0"; sha256="0r7qfrq4vcjqrzajc6xmn0rrkinqwbr8cqghgp4iklbhsjbk2xfl"; depends=[]; }; + simecol = derive2 { name="simecol"; version="0.8-12"; sha256="06zw9xhj8jwhmqwxxbj8hgz9cxrw1b4syy6z79aawv9cg1bnwfhf"; depends=[deSolve minqa]; }; simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; }; simex = derive2 { name="simex"; version="1.7"; sha256="0dmyxhg3bk23y08xbgwlg791pcl3131im3jkh9x5pjqczfjvim0a"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gqp7fg9jv8fs99y19n21bdxsd3f5mlkbvqgl"; depends=[mvtnorm survival]; }; - simglm = derive2 { name="simglm"; version="0.6.0"; sha256="1kmi5lpx8m14iz0i9z8811cp6fq2x700qsxn6rxrkxbq88a5mdss"; depends=[dplyr Matrix purrr tibble tidyr]; }; - simmer = derive2 { name="simmer"; version="3.7.0"; sha256="1jirp7bl5a0mfc0hg495mxfz5cjdigg2dzwj8rbc9qkgibfvfnih"; depends=[BH codetools magrittr R6 Rcpp]; }; + simglm = derive2 { name="simglm"; version="0.7.0"; sha256="1p29v8y3ahdkid35ky9sbj5227cvj0nn0ljzjpliyqwbkmxpncmj"; depends=[broom dplyr Matrix purrr rlang]; }; + simmer = derive2 { name="simmer"; version="3.8.0"; sha256="0d1m93ffnajvkf3wiqvbim5l1i10k30pr702wyazrg6b0c2kybkf"; depends=[BH codetools magrittr R6 Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.1.0"; sha256="1sb1ayh56sbgs4p0r3frjjfn4vcdr43xm85lvb9aqk3wmj2lddqy"; depends=[simmer]; }; simmer_plot = derive2 { name="simmer.plot"; version="0.1.13"; sha256="0afp4il95dmdgw815rk0c3cyf56gli237v4i716l4agag5l1rp60"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; simmr = derive2 { name="simmr"; version="0.3"; sha256="18ycrd7qbz7frvd3bgbqaaapslw1jw89fy3np5qyb9sswyk08w9m"; depends=[boot coda compositions ggplot2 MASS reshape2 rjags viridis]; }; @@ -11092,15 +11264,16 @@ in with self; { simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simputation = derive2 { name="simputation"; version="0.2.2"; sha256="0bn5pq3gbsjc7sdivki98k9cb0sp5wkpm0bwi4mdnvpd7r2psb1n"; depends=[gower MASS rpart]; }; - simr = derive2 { name="simr"; version="1.0.3"; sha256="0kp1x2bxr0ck49y9pn44jr7pp3ji1cqi48dr5z600mzacx6l95xp"; depends=[binom car iterators lme4 pbkrtest plotrix plyr RLRsim stringr]; }; + simr = derive2 { name="simr"; version="1.0.4"; sha256="1mm0kfisa8yq81rd9l7vmxcklj4v1fy9a7dh0yzar5vn0wh18pr1"; depends=[binom car iterators lme4 pbkrtest plotrix plyr RLRsim stringr]; }; simrel = derive2 { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; }; - simsalapar = derive2 { name="simsalapar"; version="1.0-9"; sha256="0h46acf797lp1hvs8x91nzll3zxiiczfl6vdxxrwizr109jzggcj"; depends=[colorspace gridBase sfsmisc]; }; - simsem = derive2 { name="simsem"; version="0.5-13"; sha256="0v6gbfp4659gbpzc1vffg687c8bcd45ddb7jhd0bgx66m28853kk"; depends=[lavaan]; }; - simstudy = derive2 { name="simstudy"; version="0.1.8"; sha256="0n8wq8xw4vlpcz6qlqkza9zwd3nkbmhs8nw2gzz64q9blzcp69mw"; depends=[data_table mvnfast Rcpp]; }; - simsurv = derive2 { name="simsurv"; version="0.2.0"; sha256="16rg13chr78c8d8y1s29zkcz6s0v7zgv5jzq4309xbnw8w7h7y8m"; depends=[]; }; + simsalapar = derive2 { name="simsalapar"; version="1.0-10"; sha256="1q7kh44xl7q48vpqbyrp85my6x97l4fqq36bry8vg3k5riihirzf"; depends=[colorspace gridBase sfsmisc]; }; + simsem = derive2 { name="simsem"; version="0.5-14"; sha256="1sg1zmngpviqpbsy8kxnw4f4x93gy3gh02ykmcw8j9falfnd7g6i"; depends=[lavaan]; }; + simstudy = derive2 { name="simstudy"; version="0.1.9"; sha256="0lix46xi02sfkd3nslqgcbnyfpgqhdz8kj5hh85b6ajly4hgw103"; depends=[data_table mvnfast Rcpp]; }; + simsurv = derive2 { name="simsurv"; version="0.2.2"; sha256="1dfn156mm08l1cyp6wy69rd9a2lyy7qlbqa59jq35n9fhpjbrif0"; depends=[]; }; simtimer = derive2 { name="simtimer"; version="3.0.0"; sha256="0hfp652s97dz07fs92gfsaiwd6pwg95qsvr6qjwj1k5d3h6hzf8y"; depends=[]; }; + simukde = derive2 { name="simukde"; version="1.0.0"; sha256="1v4shnyba05mh0qaylivcjby6niz2yc4zb67qfbycifbj0cl14vh"; depends=[ks mvtnorm]; }; simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; }; - simule = derive2 { name="simule"; version="1.2.0"; sha256="09lhd0q0xn15v0j172749rih3p2qgn3sbprhj2az9s4fm9752az3"; depends=[igraph lpSolve pcaPP]; }; + simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; sinew = derive2 { name="sinew"; version="0.3.5.1"; sha256="0fp5afjnkah3ig1c1fy23zlfxkfg590jai8iqf5s8wl8r4s0ywgm"; depends=[miniUI rstudioapi shiny sos stringi yaml]; }; sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; }; @@ -11110,32 +11283,32 @@ in with self; { sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.46"; sha256="00szc3l69i0cksxmd0lyrs4p6plf05sl4vxs3nl4gkbja5y4lvpc"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sisus = derive2 { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; }; - sitar = derive2 { name="sitar"; version="1.0.10"; sha256="1qsk998fa5839f9yp08sxlj48mzdm46z07x1113q63483k5bnrrc"; depends=[nlme quantreg]; }; - sitmo = derive2 { name="sitmo"; version="1.2.2"; sha256="0az4hpyyyx380slsk1kkcl8msi0c4lkwg8az2bmrhq3cik2ai8sn"; depends=[Rcpp]; }; + sitar = derive2 { name="sitar"; version="1.1.0"; sha256="1a2x6igzq0i1vac54xyiq14vzx0m20431nv7aw0anv0lss7xy6r8"; depends=[dplyr nlme quantreg rlang tibble]; }; + sitmo = derive2 { name="sitmo"; version="2.0.0"; sha256="11mzkdh01cfazxqxxlhm0ifbiggpw54k5n9qpz3vxbq10v9720h9"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; - sitree = derive2 { name="sitree"; version="0.1-2"; sha256="0scfbj33mdqz10rgw6pznxca0hbmg64k53y30lwal957430yflz5"; depends=[data_table lattice latticeExtra]; }; - sitreeE = derive2 { name="sitreeE"; version="0.0-1"; sha256="1gb0n5gis4ac0fdjcc496fwpvwmw5iwafpsjy3i1mpkjkxpn7za9"; depends=[sitree]; }; + sitree = derive2 { name="sitree"; version="0.1-3"; sha256="1rs109sxvmsbx8w75iifbc14z685k9brk7fgfy0mjgkcxszafjwk"; depends=[data_table lattice latticeExtra]; }; + sitreeE = derive2 { name="sitreeE"; version="0.0-2"; sha256="0w4gbdjphanfy614jv4zp70kl901zz5hblk35lyv7rjxifq5bpx0"; depends=[sitree]; }; sivipm = derive2 { name="sivipm"; version="1.1-3"; sha256="1l0j1bi38s09ax4kwikk615lyd074gzg1aa1j2jfmhr3igannm3z"; depends=[seqinr]; }; sizeMat = derive2 { name="sizeMat"; version="0.3.0"; sha256="0766wxcc1980ivlib2saagl20y9dm0ar7i43qcqk2jpdbbaky33z"; depends=[MASS matrixStats mcmc MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.4.1"; sha256="0aazxrqsbp5jsd5yfm6hrx17rmlqbh5vs314xms7g620aj383zrh"; depends=[arm broom dplyr effects forcats ggeffects ggplot2 glmmTMB knitr lme4 magrittr MASS merTools modelr nlme psych purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr tidyselect]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; }; - sjlabelled = derive2 { name="sjlabelled"; version="1.0.8"; sha256="1hhcv5d5jbrd9wv9hdvck40wdpr4nr6hr972ng5w2wbh7bikvgqg"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase tibble]; }; - sjmisc = derive2 { name="sjmisc"; version="2.7.1"; sha256="0vj0b3vn3mkqw23x2rnrn468db44x6wvphbqlap5n7c7dzg8hg22"; depends=[broom cli crayon dplyr haven magrittr pillar psych purrr rlang sjlabelled stringdist stringr tibble tidyr tidyselect]; }; - sjstats = derive2 { name="sjstats"; version="0.14.2-3"; sha256="0wqnyf1wpbq0av3027x455jcha7w8kg9lb62rjm5fkz52ff93hpx"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 lmtest magrittr MASS Matrix modelr nlme prediction purrr pwr rlang sandwich sjlabelled sjmisc tibble tidyr tidyselect]; }; + sjlabelled = derive2 { name="sjlabelled"; version="1.0.11"; sha256="1bkjv36v7vwvwfal9qwfyvirnv72r080cq333q161bnq6vcp648y"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase tibble tidyselect]; }; + sjmisc = derive2 { name="sjmisc"; version="2.7.3"; sha256="1d588cpgnyhxyclchiv5fx0vi155mkh7ac252swg5fp4752skff7"; depends=[broom crayon dplyr haven magrittr pillar purrr rlang sjlabelled stringdist stringr tibble tidyr tidyselect]; }; + sjstats = derive2 { name="sjstats"; version="0.15.0"; sha256="1gy37k3ziyxlf336b9s5j2shp9qapwnr8ya8sfjyrs56naai411b"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 lmtest magrittr MASS Matrix modelr nlme prediction purrr pwr rlang sandwich sjlabelled sjmisc tibble tidyr tidyselect]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skeleSim = derive2 { name="skeleSim"; version="0.9.8"; sha256="1wxdl30cy8vr1cd0wcjxyklp6crw4bv8r77ma2dkzmxm2ma5jw92"; depends=[adegenet ape hierfstat igraph markdown pegas reshape2 rmetasim shiny shinyFiles strataG swfscMisc]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; - skimr = derive2 { name="skimr"; version="1.0.2"; sha256="1grm4z4avl6qp9ssk3cwg20wgqzk9w61p2hjwhld6p78r971k07a"; depends=[dplyr knitr magrittr pander purrr rlang stringr tibble tidyr tidyselect]; }; + skimr = derive2 { name="skimr"; version="1.0.3"; sha256="1c6szryq4w6gipmz7s5nn5936dbwly013czlcl6fky2yrhhjf25v"; depends=[cli dplyr knitr magrittr pander purrr rlang stringr tibble tidyr tidyselect]; }; + sklarsomega = derive2 { name="sklarsomega"; version="1.0"; sha256="0zyaycsbi4nnqx80lvipa43zphc032gw8bmxrx4blqb67xlfhp98"; depends=[hash LaplacesDemon Matrix numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-11"; sha256="1a8nwlym6pf0z13nnw1id2wls9lq788860yhjaqd56c3slzfsymn"; depends=[clue cluster slam]; }; - skpr = derive2 { name="skpr"; version="0.47.5"; sha256="1c9ikn3lj3w2a4p1m8gdmhc1xzavf3y8zwra7lcb1snw9pznj7s8"; depends=[doParallel doRNG foreach iterators kableExtra knitr lme4 nlme Rcpp RcppArmadillo rintrojs shiny shinythemes survival]; }; - skynet = derive2 { name="skynet"; version="1.0.1"; sha256="1jcb7m4warpg0c8x83dzm107qb5i0zakvjx4a1c6rr814c7xrlhl"; depends=[data_table dplyr ggplot2 ggrepel igraph maps stringr]; }; + skpr = derive2 { name="skpr"; version="0.49.1"; sha256="0qsqa9lbrch5vs0hfp6k8vcrh0xgcjm23lpi5prrdh3h93lqjhxf"; depends=[doParallel doRNG foreach iterators kableExtra knitr lme4 nlme Rcpp RcppEigen rintrojs shiny shinythemes survival]; }; + skynet = derive2 { name="skynet"; version="1.2.2"; sha256="1k6909fm40g6ianzjzbrv93x0fx2l8lnwl38krb7r50g1yk7lnrd"; depends=[data_table dplyr ggplot2 ggrepel igraph maps stringr]; }; skyscapeR = derive2 { name="skyscapeR"; version="0.2.2"; sha256="08h3vvn9zglw3xrl0xpyj95r1n3v6lk835a4nbanxdvi21mgpi77"; depends=[astrolibR doParallel foreach MESS numDeriv oce plotrix png pracma RColorBrewer rootSolve]; }; - sla = derive2 { name="sla"; version="0.1"; sha256="0fr5n65ppwsh9z7a6rma9ak0bl8x3nz7v25lij7wb5nrf3sl74yb"; depends=[]; }; slackr = derive2 { name="slackr"; version="1.4.2"; sha256="1vm2h5fzcss3xx1annx68wrvv6c0s6h2ci0bipxmdl9amdaqw85w"; depends=[dplyr ggplot2 httr jsonlite]; }; - slam = derive2 { name="slam"; version="0.1-42"; sha256="1pvmfvqa2gcwmap41rp3rx9jrk16jvw80pq0hf5qgja4jlcb01kj"; depends=[]; }; + slam = derive2 { name="slam"; version="0.1-43"; sha256="0hy4qzngcgafxxr6ld7n9a9wy979ji998gpcc32vidwyab66dj5h"; depends=[]; }; sld = derive2 { name="sld"; version="0.3.2"; sha256="0za5pw7ki419ni9pqqzddb10d16nvv5rh5jrkl4f77j0ps2ajylp"; depends=[lmom]; }; sleekts = derive2 { name="sleekts"; version="1.0.2"; sha256="0syk244xrsv8hz5sxm7wizk0kyn1nc6z4c63c8xn57fz130zj75k"; depends=[]; }; slfm = derive2 { name="slfm"; version="0.2.2"; sha256="01n9y6kyl7z1ynckp2hkrv2yl9jf30zcbbi3sx9jrcha557fg1cf"; depends=[coda lattice Rcpp RcppArmadillo]; }; @@ -11144,33 +11317,34 @@ in with self; { slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; slowraker = derive2 { name="slowraker"; version="0.1.1"; sha256="0glc3ldvbqkvzfvhs4s5mzx1kfz05px4k7rx5jfp9dm9d0gfpvsx"; depends=[NLP openNLP SnowballC]; }; slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; }; - sm = derive2 { name="sm"; version="2.2-5.4"; sha256="0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"; depends=[]; }; - smaa = derive2 { name="smaa"; version="0.2-5"; sha256="1mwahjgslk82f8bl6qcjs1yadhbnqrxxhvkffkgc2fv3s6lh5d9m"; depends=[]; }; + sm = derive2 { name="sm"; version="2.2-5.5"; sha256="1rw2mxygxsmk8mn4wag1ppjgzk0rlvh6zd8q02qrhjrn9jhi5qj3"; depends=[]; }; + smaa = derive2 { name="smaa"; version="0.3-0"; sha256="0y7j4q147fdk7fffyinc803mfzzsmcdfx8bp695w3wkq1wwy9kyl"; depends=[]; }; smac = derive2 { name="smac"; version="1.0"; sha256="1inn7i5k0q5vln24kazh3gl3szf6lxwnjr2rw70jcyn9dr9iy952"; depends=[]; }; - smacof = derive2 { name="smacof"; version="1.10-5"; sha256="102b63b5zyjv0fsmp3in98ckacsgjvpzmv3fwbchdrvf1262aia2"; depends=[candisc colorspace ellipse Hmisc MASS nnls plotrix polynom weights wordcloud]; }; - smacpod = derive2 { name="smacpod"; version="2.0"; sha256="05bylhh98qlnq4gn0wwg3wb3pwa1q2kh06v2skj2fgbjgr03fhkn"; depends=[abind pbapply plotrix sp SpatialTools spatstat]; }; + smacof = derive2 { name="smacof"; version="1.10-8"; sha256="1q3xpfpcgsm98gzavkpsmsidch7sdxwr6iyqpz7cm8qiki8jgjzb"; depends=[candisc colorspace ellipse Hmisc MASS nnls plotrix polynom weights wordcloud]; }; + smacpod = derive2 { name="smacpod"; version="2.0.4"; sha256="0dh8n3rxrffr09a8q7vdlin9hq5f2v0hjjjqsmzgwf7ln1b9wcr1"; depends=[abind pbapply plotrix sp spatstat]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; smam = derive2 { name="smam"; version="0.3-0"; sha256="1sdr0ki2y9smiwfglgh97kj6y0n1z3blyyxk823xp3467byk1rnb"; depends=[Matrix numDeriv Rcpp]; }; - smapr = derive2 { name="smapr"; version="0.1.1"; sha256="0ci0j26nsgl4yi0b0bhxqgpn281ml5clhih2nl7hm5l8nybdyp3q"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; + smapr = derive2 { name="smapr"; version="0.1.2"; sha256="0j4ddlj5km0hmz9q61l93rm6gc7x6iyfgq1fbkjajmij0099mscr"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; smart = derive2 { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwahnxyv1p21j8x6cxr9spah2wzz8lb"; depends=[elasticnet gplots gtools igraph Matrix pcaPP PMA]; }; - smartsizer = derive2 { name="smartsizer"; version="1.0.0"; sha256="0lp7qykb6y93aw5w7nbpb4d2vpz6by6zv8j7safhixx4wczlc39k"; depends=[MASS]; }; + smartsizer = derive2 { name="smartsizer"; version="1.0.1"; sha256="0m474f6dz0izwdh2xvgx6shsbkpr969ckcld56d7c589kjhapbrl"; depends=[MASS]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; smbinning = derive2 { name="smbinning"; version="0.6"; sha256="13izdq2pl7hi8ppzmpmiiz4pmc43m63ixjrbj9lwa371vx60ndmh"; depends=[Formula gsubfn partykit sqldf]; }; smcUtils = derive2 { name="smcUtils"; version="0.2.2"; sha256="0d1kmg386j0zrpp8vgxjwvpf1i25l86xrh82767xkp0n9qj8srwq"; depends=[]; }; smcfcs = derive2 { name="smcfcs"; version="1.3.0"; sha256="1860qzhfpdr78a8ha8537izbkm0dx9j63l9fv6mswcs5sjl25i09"; depends=[MASS survival VGAM]; }; smco = derive2 { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; }; smcure = derive2 { name="smcure"; version="2.0"; sha256="1j7fxnb0sx57a0l929c3haz4f1y829ymlq0cvdh0cia4qp6ydv60"; depends=[survival]; }; - smdata = derive2 { name="smdata"; version="1.1"; sha256="1hcr093xfkp88fn75imjkmfnp9cfsng5ndxpa8m2g0l29qhpxfvk"; depends=[]; }; + smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; smdc = derive2 { name="smdc"; version="0.0.2"; sha256="1j6xnzjbmmakbmk3lyjck3bsy8w8hyd9d8h04s4gbddhci283mqm"; depends=[proxy tm]; }; smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; }; sme = derive2 { name="sme"; version="1.0.2"; sha256="0gszpy1sx2qsypps3iza79sab475wcrscl7wnbbrv97a3ry0ybp6"; depends=[lattice]; }; smerc = derive2 { name="smerc"; version="0.4.5"; sha256="1455fjfihznzivz80jad7pyfjms8yyvmsz6wqdvqv3n6dsyr8fvb"; depends=[fields maps matrixStats smacpod sp SpatialTools spdep]; }; smfsb = derive2 { name="smfsb"; version="1.1"; sha256="0khd23b6k9zgxz2x6g6c6k2g32mbpli32izdq6fgk1a990kdsp6j"; depends=[]; }; + smicd = derive2 { name="smicd"; version="1.0.1"; sha256="05v1lwl2jacrzd4fcp7d386gd70q1kcrr96pnq39zdsniq2j7dn9"; depends=[formula_tools ineq laeken lme4 MuMIn mvtnorm spatstat truncnorm weights]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; smnet = derive2 { name="smnet"; version="2.1.1"; sha256="0fa47zgm7jxvs3jfai54wsc6qa9ycqw4f3yr941fvkczwzh4ch02"; depends=[DBI RSQLite spam SSN]; }; smoof = derive2 { name="smoof"; version="1.5.1"; sha256="01jkldmxn86vmcmmz81mdlhpm1m3bddj4sv550a3b4wm1r3gddng"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo RJSONIO]; }; - smooth = derive2 { name="smooth"; version="2.4.1"; sha256="1iv34nzvz0y2cwlhq7ddm2ym0mdkp7jqxbfik2l64r4mfm8l0k8h"; depends=[forecast nloptr Rcpp RcppArmadillo zoo]; }; - smoothAPC = derive2 { name="smoothAPC"; version="0.2"; sha256="06f0d4bjygpgcayzg9cxcb5plhsls0ljla2mrmjnjxpq8g3c3cl8"; depends=[colorspace lmtest quantreg rgl SparseM]; }; + smooth = derive2 { name="smooth"; version="2.4.5"; sha256="0yp7ziikd1w0j091c49zqbfwypp49rfxpn410kbh09bay2fb58x1"; depends=[forecast greybox nloptr Rcpp RcppArmadillo zoo]; }; + smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; }; smoothSurv = derive2 { name="smoothSurv"; version="2.0"; sha256="0ypgmqf7mj0x0ibid9qx6cbqn4cpig8333g095b64297bf0syvjc"; depends=[survival]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; @@ -11179,11 +11353,11 @@ in with self; { smoothr = derive2 { name="smoothr"; version="0.1.0"; sha256="19ylhy7jz445yafdxlygs91vl4vrnnhggc2grwap0dcz0cazik1d"; depends=[sf units]; }; smoothtail = derive2 { name="smoothtail"; version="2.0.5"; sha256="1sqkwniz9m03k23nba9ndmdm0g03mdshzm8risr6wz98jcqjilrk"; depends=[logcondens]; }; smotefamily = derive2 { name="smotefamily"; version="1.2"; sha256="166gqwqljips2r0030m3q44zmxlnxcpb9hmwbg1bk3dqk9gfl8ra"; depends=[]; }; - smovie = derive2 { name="smovie"; version="1.0.0"; sha256="07sf9nxanfkcp42bv4x12vrlsdr2nnyfgdm6bhcfpggavd4s8r9q"; depends=[revdbayes rpanel SuppDists]; }; + smovie = derive2 { name="smovie"; version="1.0.1"; sha256="0nh228vp06w83wm826vw62gzy0zk66ng61safwvhl8lgaxkbwqmj"; depends=[revdbayes rpanel SuppDists]; }; smpic = derive2 { name="smpic"; version="0.1.0"; sha256="0ff2146gjcrc6nvrbf4779jh076abhb843zzlk2zvqir13qfap61"; depends=[ggplot2 imager stringr]; }; sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; - sn = derive2 { name="sn"; version="1.5-1"; sha256="0l7qlah6dwkp8jswnr2mn3phlm15naba5zkmv0g5pcqy5ix0gz7w"; depends=[mnormt numDeriv]; }; + sn = derive2 { name="sn"; version="1.5-2"; sha256="16gwr68zzj5v83bqfmzxnzwig3dnjrkxdhs6clri1caqkvrq6aig"; depends=[mnormt numDeriv]; }; sna = derive2 { name="sna"; version="2.4"; sha256="1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"; depends=[network statnet_common]; }; snakecase = derive2 { name="snakecase"; version="0.9.1"; sha256="02462vd08asm4ah2brrc3z2s1lqcya80shrd6w743cylv3h3hpyv"; depends=[stringi stringr]; }; snappier = derive2 { name="snappier"; version="0.1.0"; sha256="0334zwhqdl3lfw7rg8ql7z10qj8jjrm17yi9mgdcxnzaf3f1p859"; depends=[]; }; @@ -11208,7 +11382,7 @@ in with self; { soc_ca = derive2 { name="soc.ca"; version="0.7.3"; sha256="0z3phmvgwd3s6swfaywq851my12a2n48i6k26vhggc6pf9d28phl"; depends=[ellipse ggplot2 ggrepel gridExtra reshape2 shiny]; }; social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; socialmixr = derive2 { name="socialmixr"; version="0.1.2"; sha256="0cj8l1gl7c9hk3hpznfqhblmh79qvi9866713sry538f3kkv897c"; depends=[countrycode curl data_table httr jsonlite oai stringr wpp2015 XML]; }; - sodavis = derive2 { name="sodavis"; version="1.0"; sha256="1mhmrg7c0chwjw117pzjya5y0ml8mm9ps5b64q5cjchlxr8900nx"; depends=[MASS mvtnorm nnet]; }; + sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; sodium = derive2 { name="sodium"; version="1.1"; sha256="1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w"; depends=[]; }; sofa = derive2 { name="sofa"; version="0.3.0"; sha256="10f01a23bq6a30f95cilfan588dg0bg36y7g14q46rmcz15cqbrx"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; @@ -11219,23 +11393,22 @@ in with self; { soilDB = derive2 { name="soilDB"; version="2.0-1"; sha256="0nzi0fss77x0bjdzslhy0flwvhap0i0cq3xw82x7sggnbmc3ya72"; depends=[aqp curl Hmisc plyr raster reshape2 sp xml2]; }; soilcarbon = derive2 { name="soilcarbon"; version="1.2.0"; sha256="1gxq7np5xh3jcqbsf8xva4b82rv6rab2j23mbkc4pjs6nbnzvzba"; depends=[devtools ggplot2 openxlsx shiny]; }; soilphysics = derive2 { name="soilphysics"; version="3.1"; sha256="11c094bqbwhggh0n3hdva1321gqzz2k1b7v3767wyyk1xpgzg98r"; depends=[boot MASS rpanel tkrplot]; }; - soilprofile = derive2 { name="soilprofile"; version="1.0"; sha256="0sdfg6m2m6rb11hj017jx2lzcgk6llb01994x749s0qhzxmvx9mb"; depends=[aqp lattice munsell splancs]; }; - soiltexture = derive2 { name="soiltexture"; version="1.4.5"; sha256="0a9n89ygfqpm6sir76ginri1l6gmw3gfd58szl4ikzaz8fk5hxqh"; depends=[MASS sp]; }; + soiltexture = derive2 { name="soiltexture"; version="1.4.6"; sha256="1ak8vp6y2cb04118bw5inmwwgjvbxmzpbarr6ga7r1w5i16c7nk7"; depends=[MASS sp]; }; soilwater = derive2 { name="soilwater"; version="1.0.5"; sha256="11gal7hj73j82qx65krmzpmf0gpm41ph8hw70df46dbf4w23vvjn"; depends=[]; }; sokoban = derive2 { name="sokoban"; version="0.1.0"; sha256="07r2zv9rynvw06fpncrz3rsmkdy6z2pcvmm559bhs428kmnq2xib"; depends=[]; }; solaR = derive2 { name="solaR"; version="0.44"; sha256="1waxi2zfns4dh1vpsl3khbgaw07icp4f1ax9l0pry9qipmk0nk3k"; depends=[lattice latticeExtra RColorBrewer zoo]; }; solarPos = derive2 { name="solarPos"; version="1.0"; sha256="0004da7vqpq14q5lhs8vyvjl99j8gzxd5wrlw5d1vwfns3ica0q5"; depends=[]; }; solarius = derive2 { name="solarius"; version="0.3.0.2"; sha256="17c765nxq81xshyyl4lfhqjmgvmhn9xyzc6x4qd33wvhh4148f38"; depends=[data_table ggplot2 plyr]; }; - solr = derive2 { name="solr"; version="0.1.6"; sha256="0hlysi1yw4l98dcb1shznzrgia9pqzfj0p1hmnfz5gz2j64lf4h4"; depends=[assertthat httr plyr rjson XML]; }; + solrad = derive2 { name="solrad"; version="0.99.0"; sha256="1r3bz2nvg660bfba9xbqlzrysvn0wpmn948qx3hfbqcv5ihcnly3"; depends=[]; }; solrium = derive2 { name="solrium"; version="1.0.0"; sha256="1rlf60kynqb8pvzllfdkiabxgnqx60hwm8vy86y9f2bh7d7jsdhf"; depends=[crul dplyr jsonlite plyr R6 tibble xml2]; }; - solvebio = derive2 { name="solvebio"; version="2.4.0"; sha256="0sikq63i6x6vq0h5d8w92yjf6mhnb8nidn18zv27lfmnl0mwwpnm"; depends=[dplyr httr jsonlite mime]; }; + solvebio = derive2 { name="solvebio"; version="2.5.0"; sha256="1053pmmm1bl5kfrgmlbfnb6xywvv4nwrd6mwn9kyj2p63akvwq1s"; depends=[dplyr httr jsonlite mime]; }; som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="3.4"; sha256="02ghcs0w5pkmc20drynd44cli3s4vkxpksw3h9f828maw2n7q9jk"; depends=[data_table lattice MASS Matrix]; }; + sommer = derive2 { name="sommer"; version="3.5"; sha256="1qsg822y3fsqs7knc8vwlhnnh51d8f8rn7yzvmxiqd8qnrkkmbix"; depends=[data_table lattice MASS Matrix]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; }; @@ -11247,7 +11420,6 @@ in with self; { sortinghat = derive2 { name="sortinghat"; version="0.1"; sha256="1wrxwhdp3gj1ra0rgldnmc0w019bnjb6z9j20c5p1ab09x4dmlny"; depends=[bdsmatrix MASS mvtnorm]; }; sorvi = derive2 { name="sorvi"; version="0.7.26"; sha256="19lfrc4bdiljs437w3a2bpf7abnkv0934dh929bbj2w1w8rzghjn"; depends=[dplyr ggplot2 RColorBrewer reshape2]; }; sos = derive2 { name="sos"; version="2.0-0"; sha256="0fwv76m0iihzy60kglsdjnlp6800qsll6h0v2435a50lcr53jj8g"; depends=[brew]; }; - sos4R = derive2 { name="sos4R"; version="0.2-11"; sha256="0r4lficx8wr0bsd510z4cp6la32xf928rsiznbywpxghnypsrcgg"; depends=[RCurl sp XML]; }; sotkanet = derive2 { name="sotkanet"; version="0.9.48"; sha256="1jw9agj92zzgad5kk9z6smjacimwinci6aaqlzmshivb8g8rv8zp"; depends=[RCurl rjson]; }; sotu = derive2 { name="sotu"; version="1.0.2"; sha256="0aqwkawaydsm91hz13msjg1a5llg7xmv6hxmfmsaganrl7iaym3c"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; @@ -11255,37 +11427,40 @@ in with self; { soundgen = derive2 { name="soundgen"; version="1.2.0"; sha256="1k6my6lcwy36fa25glyd8vfr3b57fwx7nz4s24bkf40vp0vkpsc2"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny tuneR zoo]; }; source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; sourceR = derive2 { name="sourceR"; version="1.0.1"; sha256="01qxa44s9szaxl0rdcx4p0wn4vby17hdzdjzpsbls3prsnr0jaad"; depends=[assertthat cluster dplyr gplots gtools hashmap R6 reshape2 SPIn tensorA]; }; - sourcetools = derive2 { name="sourcetools"; version="0.1.6"; sha256="0l8c6fql82cb246qh7hfgxb4s35qn0qfgy6dzvkx0zkz1cpqvx69"; depends=[]; }; - sp = derive2 { name="sp"; version="1.2-7"; sha256="0q04yfgyjannsrzl0ppwcv0simrxrrbx2iz5mzaafc5x38zf0q3d"; depends=[lattice]; }; + sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; + sp = derive2 { name="sp"; version="1.3-1"; sha256="17xm1ig80p9wc860hm3bgishz6lj9fxgwqidj7rkbk4ap99qp62p"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBayes = derive2 { name="spBayes"; version="0.4-1"; sha256="1cypl3kvcr7nwdkq59zpdhkasz0z5r2gk8hr6wf1a1992k8c33ag"; depends=[abind coda Formula magic]; }; - spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.2"; sha256="0m1432gkjkkqmzhksv19yca1wyvp5vjwcmpavhiik4ghfx72rgrr"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; - spData = derive2 { name="spData"; version="0.2.8.3"; sha256="0w638fmzir2z7mn2ybfb88hlfnx1s36ysv7rmhfyf1s6wpyqcswl"; depends=[]; }; - spGARCH = derive2 { name="spGARCH"; version="0.1.4"; sha256="1bvrhjvw1yyfajm6wyh38dvqkvrx9ymmk45pgbn4qwf47ckryhap"; depends=[Matrix Rcpp RcppEigen Rsolnp spdep truncnorm]; }; + spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.3"; sha256="0syb4x05j878jhcql8prfw1aqxmpi1idxk1d4xl52j32wngkpn8b"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; + spData = derive2 { name="spData"; version="0.2.9.0"; sha256="1yzgfbihpx9xj2vw6amm5sqib9d8xs4p964hlqbvypp4hfphnpwc"; depends=[]; }; + spFSR = derive2 { name="spFSR"; version="1.0.0"; sha256="0094plnjlyhnnjqw3i4an5q95bw6hjy1gzc7zr6wy77faivqsbms"; depends=[class ggplot2 mlbench mlr parallelMap tictoc]; }; + spGARCH = derive2 { name="spGARCH"; version="0.1.5"; sha256="14r8b2hj211r3bqk44l5y4zvlqbk6h8pa5i25rn0d9fqr37cks1f"; depends=[Matrix Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.9"; sha256="10cvha5j2pi3b2qiq3jbrc10yi84a595zlg0wshx3wrzxb1rim85"; depends=[]; }; + spMaps = derive2 { name="spMaps"; version="0.3"; sha256="0w4rrzbybaf9zgb09zg0zkf2hgvfrwx57yzbxm4px1ygdfxyi4cm"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="0.1.1"; sha256="0b55arvy5xr592bs2082djyzaa48jbv0y85h7nnj479f8c31grqp"; depends=[coda Formula RANN]; }; spTDyn = derive2 { name="spTDyn"; version="2.0"; sha256="0wandd5iqyqb474096lky04rrgj31gnyqnlmgw8ypxsypd0gqdy0"; depends=[coda sp spacetime spTimer]; }; spTest = derive2 { name="spTest"; version="0.2.5"; sha256="11x2wq3031mqbj4n6hvb4l3sp4382qankdl1v1qh7ab2xa0h6xw8"; depends=[geoR sp]; }; spThin = derive2 { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[fields knitr spam]; }; - spTimer = derive2 { name="spTimer"; version="3.0-1"; sha256="1vl26d248642grca63kv1rsghqscchkhbybby0fgfg58v042qbs5"; depends=[coda sp spacetime]; }; + spTimer = derive2 { name="spTimer"; version="3.1"; sha256="1b3d8z8bb8jagr4vcxwqfcq2y37hb975v75ggmpc02jvy228xs1z"; depends=[coda extraDistr sp spacetime]; }; spa = derive2 { name="spa"; version="2.0"; sha256="1np50qiiy3481xs8w0xfmyfl3aypikl1i1w8aa5n2qr16ksxrnq3"; depends=[cluster MASS]; }; - spaMM = derive2 { name="spaMM"; version="2.4.8"; sha256="15hwz4824m3p7vn6faiffx62zwz0ipqs5z8q6r208vy0jivawwsl"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; }; + spaMM = derive2 { name="spaMM"; version="2.4.35"; sha256="1b013kyrhld2y4wr69v4bkii4qjp38hrp1srmmj5ldb68zw3vadz"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; }; - spaceExt = derive2 { name="spaceExt"; version="1.0"; sha256="0lp8qmb7vcgxqqpsi89zjy7kxpibg3x2mq205pjmsrbbh7saqzr4"; depends=[glasso limSolve]; }; spaceNet = derive2 { name="spaceNet"; version="1.0.1"; sha256="005jz7bm3c7zi3pgm8wyivc2kl058c0lwdjjzv0qb1vdsq9mpxx1"; depends=[MASS permute RcppTN Rfast sna vegan]; }; spacejam = derive2 { name="spacejam"; version="1.1"; sha256="1mdxmfa1aifh3h279cklm4inin0cx3h0z2lm738bai34j6hpvar7"; depends=[igraph Matrix]; }; + spacesRGB = derive2 { name="spacesRGB"; version="1.0-4"; sha256="0bifagywaksn27cdfsln52f5nwsaj347xilp812shmcma29b08ig"; depends=[]; }; spacetime = derive2 { name="spacetime"; version="1.2-1"; sha256="1i6yrmyr9vc5lr99w7qhr0jqdx97ckjqay5g0lqdrk98sygpfl4g"; depends=[intervals lattice sp xts zoo]; }; spacodiR = derive2 { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[colorspace picante Rcpp]; }; spacom = derive2 { name="spacom"; version="1.0-5"; sha256="0b6yh4q9f0ibwlwyckwaya9m645j22x6bdz9mz3chass8qza6bls"; depends=[foreach iterators lme4 Matrix nlme spdep]; }; spacyr = derive2 { name="spacyr"; version="0.9.9"; sha256="1zdn57k5iacy73xmac32mslqzidpn3d38qyrnbzkzv2slysqwgkw"; depends=[data_table reticulate]; }; spaero = derive2 { name="spaero"; version="0.2.0"; sha256="0srkah89z23j30y2smlnyhf97mm123apma8vgmgfarbx188bkwpn"; depends=[]; }; - spam = derive2 { name="spam"; version="2.1-4"; sha256="0xdr6rmbsx6qq3n4225hr9sma56f33p4pbfirb4r1wxspy5d0zi9"; depends=[dotCall64]; }; - spam64 = derive2 { name="spam64"; version="2.1-4"; sha256="186q2yl7kjmh13k51zysa6c86dcsydiaam51c2v9v8gk8pgagfgf"; depends=[]; }; + spagmix = derive2 { name="spagmix"; version="0.2-0"; sha256="16yzkq1z5qj21milyw98a5bk7gvi6k3mbwgvnw7s8ckr40pbp48l"; depends=[abind MCMCpack mvtnorm sparr spatstat]; }; + spam = derive2 { name="spam"; version="2.2-0"; sha256="02v78dmf263drmz3y099gbakbcvaxkb18900s7sw440cjfv691d1"; depends=[dotCall64]; }; + spam64 = derive2 { name="spam64"; version="2.2-0"; sha256="1kyj93drzvd4ph6x7wr318xq3ldrrdxb17rwxws39wa4gj7jkmkg"; depends=[]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.3.2"; sha256="1dg4wnvxhybhagag9xx27af6760dlclaivx27mfxywfha312xfpn"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="0.9.0"; sha256="0cfvi5pxg1wg9kl9rxrarbb3jaxwjfwy34lmg1yy5nj8ld8lzlfc"; depends=[abind complexplus foreach matrixcalc minpack_lm nnls plyr pracma signal smoother stringr svd tkrplot]; }; + spant = derive2 { name="spant"; version="0.10.0"; sha256="0kvxaaqij2wnjchp4zrqkwnsp6g767mx840xvyb8lq01a9k7jjyn"; depends=[abind complexplus foreach magrittr matrixcalc minpack_lm nnls plyr pracma readr signal smoother stringr svd tibble tkrplot]; }; sparc = derive2 { name="sparc"; version="0.9.0"; sha256="0jsirrkmvrfxav9sphk8a4n52fg0d1vnk3i8m804i4xl0s7lrg8s"; depends=[]; }; sparcl = derive2 { name="sparcl"; version="1.0.3"; sha256="1348pi8akx1k6b7cf4bhpm4jqr5v8l5k086c7s6rbi5p6qlpsrvz"; depends=[]; }; spareserver = derive2 { name="spareserver"; version="1.0.1"; sha256="094q5i6v4v37hzfdyps8zni394z312r802hl04jw0xzzps922rq4"; depends=[assertthat httr pingr]; }; @@ -11294,7 +11469,7 @@ in with self; { sparkTable = derive2 { name="sparkTable"; version="1.3.0"; sha256="1fc2nihxfrjpmxm9g9296mz5czd3ydvi1v37g8qgb20j7b73c64h"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; }; sparkavro = derive2 { name="sparkavro"; version="0.1.0"; sha256="0jihqvjs7dgyxhyzhsbki7khy7fjniwf9xwlangzqfi4rcan8g7x"; depends=[DBI dplyr sparklyr]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="0.7.0"; sha256="0lyn5xlz7a826dmlihn6jp2kq72abr3jy0ylsa4lvk9sj3acy988"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr httr jsonlite lazyeval openssl rappdirs readr rlang rprojroot rstudioapi shiny withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="0.8.4"; sha256="1gmzg8464wqygx8r0rh1d67a2h9zpm98y6jwi3ay4adw7bnffhvx"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr httr jsonlite lazyeval openssl rappdirs readr rlang rprojroot rstudioapi shiny tidyr withr xml2]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; }; sparr = derive2 { name="sparr"; version="2.2-11"; sha256="01li60cybv9kg54zkc9rh4ra6danzbnap9rx59pgfj7zkhs2phmn"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; }; @@ -11302,11 +11477,12 @@ in with self; { sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; }; sparseFLMM = derive2 { name="sparseFLMM"; version="0.2.2"; sha256="12143qij3p8vry9i02i52nj00m1ckkwg2rq99dq00dq43axcpvgw"; depends=[data_table MASS Matrix mgcv refund]; }; sparseHessianFD = derive2 { name="sparseHessianFD"; version="0.3.3.3"; sha256="1a0pkbb7yk9pp57zyy96k7p5xy1s44jbfy0nz8zyw4h774369yfm"; depends=[Matrix Rcpp RcppEigen]; }; + sparseIndexTracking = derive2 { name="sparseIndexTracking"; version="0.1.0"; sha256="1r636msdvmajxhc8chq40x01cg1ykdxl66qw83pg291x19bg1wvm"; depends=[]; }; sparseLDA = derive2 { name="sparseLDA"; version="0.1-9"; sha256="1k3sw9kc40yxnfss4vrsx34qxmv8ssddyhbfjhxrdldvblhbwchb"; depends=[elasticnet MASS mda]; }; sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0"; sha256="11llmrkq0pnrdphgjvhmg269bq3xbbn4s7kd7xhvk62sigvspkcj"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.1.1"; sha256="0ikh1i4vid6r4sx9pdjqc5wbh4xdj966mr0b7jb1vjw18wrzad8q"; depends=[Matrix]; }; sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; - sparseSVM = derive2 { name="sparseSVM"; version="1.1-2"; sha256="1bv9ipfs275vr1hmz7g7w4rimvbkg15wjh3xj3cx1zam91k384k9"; depends=[]; }; + sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; sparsebn = derive2 { name="sparsebn"; version="0.0.5"; sha256="19315nzj9pz98498amlhas6ii3vwvn3qxz5a6136nh2xfwfg2bhc"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.6"; sha256="02a75ldvxfn0awn2aaws3fgd4zzk1jjfry4nxjf3y1grdbbz396y"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.2.4"; sha256="1sa3yssncbpx8yid5wrnxdq7jl3hy5rskyh60v5x592ijcb2mif0"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm]; }; @@ -11318,13 +11494,13 @@ in with self; { sparsesvd = derive2 { name="sparsesvd"; version="0.1-4"; sha256="1yf373552wvdnd65r7hfcqa3v29dqn7jd4cn431mqd2acnqjrsam"; depends=[Matrix]; }; sparsevar = derive2 { name="sparsevar"; version="0.0.10"; sha256="069r0kbypmx7pw3z2v9l17qidw3d73rzf5zs6yn1adyvpsddjxi8"; depends=[doParallel flare ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsio = derive2 { name="sparsio"; version="1.0.0"; sha256="12nbydgzl3qlanlsfdy8bvg6rxa439lv0z0vbyqssqwky3mmg5c3"; depends=[Matrix Rcpp]; }; - spartan = derive2 { name="spartan"; version="3.0.0"; sha256="1q78l04nbrllrsk14haln5s829rkkhkhmb34xzfgyd8glbi7z4ay"; depends=[e1071 ggplot2 gplots lhs mco mlegp neuralnet plotrix psych randomForest XML]; }; + spartan = derive2 { name="spartan"; version="3.0.1"; sha256="15gn72cgbb3hf6grq2hhh2vxd3in0jp62k11qfap6fy9rm4cnqg6"; depends=[e1071 ggplot2 gplots lhs mco mlegp neuralnet plotrix psych randomForest XML]; }; spass = derive2 { name="spass"; version="1.1"; sha256="1kr2ixyvsm82h2brdm51bzll69632mkj9f88a2ny0pcyqrbggg83"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spate = derive2 { name="spate"; version="1.5"; sha256="1hlh4iwx1lrl8r2gag33z2xdv6k4hg86ch4f0jlqnqkhm9hapshf"; depends=[mvtnorm truncnorm]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-1"; sha256="0n7f3r4ahv1w5mwx5mnib3g4263kz73rh1fcfk5wb12y52x8n1iz"; depends=[Matrix Rcpp]; }; spatial = derive2 { name="spatial"; version="7.3-11"; sha256="04aw8j533sn63ybyrf4hyhrqm4058vfcb7yhjy07kq92mk94hi32"; depends=[]; }; spatial_gev_bma = derive2 { name="spatial.gev.bma"; version="1.0"; sha256="1rjn0gsbgiv69brhnm0zj25ya3nyfh4yf6jizng85mvss3viv3hj"; depends=[coda msm SpatialExtremes]; }; - spatial_tools = derive2 { name="spatial.tools"; version="1.4.8"; sha256="0qnsjfx974na87p3n7sp711sc13v6dmpvb2kjpvscixs8rsy03y1"; depends=[abind doParallel foreach iterators mmap raster rgdal]; }; + spatial_tools = derive2 { name="spatial.tools"; version="1.6.0"; sha256="1jh9psc2im0mp52mmz596x5h64m6w1d8hibnm7x52di5j2jp29vz"; depends=[abind doParallel foreach iterators mmap raster rgdal sp]; }; spatialClust = derive2 { name="spatialClust"; version="1.1.1"; sha256="042yrmh1rb0hxynxlbdpcissgy9zazs5aqx7vj388ibynzijck3r"; depends=[ggplot2 maptools rgeos sp]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; spatialEco = derive2 { name="spatialEco"; version="1.1-0"; sha256="1cvll6z775w8nvl5q5p62qgp3j2d0kcdb2avqwcqybk23jlxl7dr"; depends=[cluster EnvStats maptools MASS RANN raster RCurl readr rgeos rms SDMTools sf sp SpatialPack spatstat spdep yaImpute]; }; @@ -11334,12 +11510,12 @@ in with self; { spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; spatialsegregation = derive2 { name="spatialsegregation"; version="2.44"; sha256="02s75q6ylzm6xzr1q23fhps3svlb0ix86dzgr23wf42369gs7h0g"; depends=[spatstat]; }; - spatialwarnings = derive2 { name="spatialwarnings"; version="1.0"; sha256="1j8zr9pv769ji9ynzrhah3nd56mjjap450c28g26ff00l3kr9l03"; depends=[ggplot2 moments plyr poweRlaw Rcpp RcppArmadillo reshape2 tidyr VGAM]; }; - spatstat = derive2 { name="spatstat"; version="1.55-1"; sha256="01rzaaws3nkzqdpqvq54glxxl611gz8vi7l7jv988685y8r8q4wa"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; - spatstat_data = derive2 { name="spatstat.data"; version="1.2-0"; sha256="0nzw5y1in36mib5g4v076b9jii71jjidxajn3n8v67lvl48dmwgm"; depends=[spatstat_utils]; }; + spatialwarnings = derive2 { name="spatialwarnings"; version="1.2"; sha256="1kpyx1jl23ml4gpbwz5p4srmdq58634dxznw1g6f618wml13ab3s"; depends=[ggplot2 plyr Rcpp RcppArmadillo reshape2 tidyr VGAM]; }; + spatstat = derive2 { name="spatstat"; version="1.56-0"; sha256="0gigb7vpgpwg4hrwsl9wncknrl2c7i4iv9aab2qskbc5z7xxjs4v"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; + spatstat_data = derive2 { name="spatstat.data"; version="1.3-1"; sha256="13wb9c1r7g2lrrjv7a2qmkyz27yjmcasl9qrzgk09akqgikkbbf3"; depends=[spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="3.5-7"; sha256="1sdcx4qxv0z5q97rljn34mssbs4w6qbqxhn71xmkns01xypl1wr2"; depends=[spatstat spatstat_utils tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="1.8-0"; sha256="053j67mrnjcw1mdbm3qjvf67hrfnhsma4770r7l67bs4xys2qhfg"; depends=[]; }; - spatsurv = derive2 { name="spatsurv"; version="1.1"; sha256="0fakhz2qc5vb7ym2ik7hilv8g5fn3z7s16hzngq1n591xza5b74g"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="1.8-2"; sha256="1wjvwhhyqh8f4cm3xw7vhrnj5qr9vlwkcxkj1l6s4sbjbcli2y2p"; depends=[]; }; + spatsurv = derive2 { name="spatsurv"; version="1.2"; sha256="0acg6n5qs3z9c7y2n3amla61dm3z1p16njkx0h52dlgdbj5v1nhn"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.4.8"; sha256="1f0lradf7a3fjkdhbviw24awpqj1pzw1wfvigrqhnmf0jjw3nng3"; depends=[dplyr sp tibble]; }; spc = derive2 { name="spc"; version="0.6.0"; sha256="118r2yjfmzm0bi3ccx9pzi56vw2kbjz0pbxrjqdks0075fk7ij0q"; depends=[]; }; spc4sts = derive2 { name="spc4sts"; version="0.3.1"; sha256="1g7q3g486qns8qwpki2nbiy995v7fl1ibmk4645ws9yxgybw5mxj"; depends=[gridExtra rpart]; }; @@ -11351,33 +11527,35 @@ in with self; { spdep = derive2 { name="spdep"; version="0.7-7"; sha256="0wrlximy4w5y5aszy3pacmf3ag224chl12q4rj4r7ky6zw2sn1ns"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp spData]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.1.3"; sha256="1f34yzj9z4f1dj7pqaayk0mvabzwa6kc3kwi1pmpikl1afgsyv25"; depends=[dplyr lazyeval rlang sp spbabel tibble]; }; - spduration = derive2 { name="spduration"; version="0.17.0"; sha256="1s41rs5nbdrknn6ag7zn8ds3203q2x5z5mb9vf80y6ba6w3ksr32"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; + spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.3"; sha256="0qh0kkxs6hk344k3fys0g9yy0xl0kwnwl18bgiak53fd1k7whskq"; depends=[animation deSolve raster sp]; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; - speaq = derive2 { name="speaq"; version="2.3.1"; sha256="18v39nm9h4388asl0vk2w874kpg5spp7fyhib04cyb91hhx910sr"; depends=[cluster data_table doSNOW foreach ggplot2 gridExtra impute MassSpecWavelet missForest mQTL reshape2 rvest xml2]; }; + speaq = derive2 { name="speaq"; version="2.3.3"; sha256="1zrm8xd2laix1rl4fgxscciia9sn932q44p0dsphpd1wr63sh6mv"; depends=[cluster data_table doSNOW foreach ggplot2 gridExtra impute MassSpecWavelet missForest mQTL reshape2 rvest xml2]; }; + spearmanCI = derive2 { name="spearmanCI"; version="1.0"; sha256="1xi51dphv91j5hgrd25sqs1li0g24cwpa1k162arw5b0qfl04f17"; depends=[emplik MASS]; }; spec = derive2 { name="spec"; version="0.1.3"; sha256="0i1c5wjrca36zf5ak95i8n57hy1jj8w0qkkpnjqpn3xv3nvqccr2"; depends=[csv encode magrittr]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; - speciesgeocodeR = derive2 { name="speciesgeocodeR"; version="1.0-4"; sha256="033877l9sxcvvzpyf9aw19sj8qfscim663j2y2az8bl9c79xw4ph"; depends=[maps raster sp]; }; - specificity = derive2 { name="specificity"; version="0.1.1"; sha256="1gvlyx9crkzm3yyp1ln5j9czcg83k7grm6ijabhl919gjjr1p60n"; depends=[car]; }; specklestar = derive2 { name="specklestar"; version="0.0.1.7"; sha256="04vm989yi31vqnf5rs6cdyikm4jzfd9njxh0ls3dvjrg19ipsnmn"; depends=[Rcpp]; }; + specmine = derive2 { name="specmine"; version="2.0.3"; sha256="0lq9bv7xa8lfa4axr78ijyjlhdzimlini966729nknlq877mwdgz"; depends=[baseline caret compare devtools ellipse gdata genefilter GGally ggdendro ggplot2 hyperSpec igraph impute KEGGgraph KEGGREST MAIT MASS Metrics pcaPP pls qdap RColorBrewer readJDX reticulate rgl scatterplot3d speaq xcms]; }; spectacles = derive2 { name="spectacles"; version="0.5-0"; sha256="0i1kzp0fpljcvkws15w3iwgpjig2llhlrfs5blk562kgb7vwshqm"; depends=[baseline epiR ggplot2 plyr reshape2 signal stringr]; }; spectral = derive2 { name="spectral"; version="1.0.1"; sha256="0mawgxz1gbzgb3lxm6gfbv3wan0ykziprqym8ajvdjsdq4fwkk2m"; depends=[rasterImage Rcpp]; }; spectral_methods = derive2 { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; }; + spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; - spectrolab = derive2 { name="spectrolab"; version="0.0.4"; sha256="1vmrpszjwl9iq8z6p8rhh560l79iya6rah7jld8ykvm9irwdf15h"; depends=[devtools prospectr RColorBrewer shiny shinyjs]; }; + spectrolab = derive2 { name="spectrolab"; version="0.0.6"; sha256="0pzisyi64f9wm79qxw22rmgm6lsgn6jqavxh688yrm94nnn1qv5h"; depends=[devtools prospectr RColorBrewer shiny shinyjs]; }; speedglm = derive2 { name="speedglm"; version="0.3-2"; sha256="1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz"; depends=[MASS Matrix]; }; spef = derive2 { name="spef"; version="1.0-7"; sha256="006qp0qsqrlbbbv4b86ikqz1ig0php0cahqz4c9n3js1kxwsdi7d"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; spelling = derive2 { name="spelling"; version="1.1"; sha256="10zhzbpyjw5lkg4iyjwgs5xp2c8bgwyzjg146fcml6cjs6xhl8ni"; depends=[commonmark hunspell knitr xml2]; }; + spemd = derive2 { name="spemd"; version="0.1-1"; sha256="1aw8dg2fm8qd95bgim2kjwp7ax4b2g78521llsxv7fhdj9hl7rgw"; depends=[MBA sp spdep]; }; sperich = derive2 { name="sperich"; version="1.5-7"; sha256="1apgq5nsl6nw674dy7bc7r7z962wcmqsia5n67a8n6c5lcgcif3f"; depends=[foreach rgdal SDMTools sp]; }; sperrorest = derive2 { name="sperrorest"; version="2.1.5"; sha256="126vwk3bxs27gblakc5nplj0k90a21gks9d0kbyanlxc2ihsy243"; depends=[doFuture foreach future future_apply gdata glue magrittr pbapply pbmcapply purrr ROCR rpart stringr]; }; spew = derive2 { name="spew"; version="1.3.0"; sha256="09g8j5v5k455c3kqm1fn09ql3x34xy22igicakwl99s8gsln7v3p"; depends=[maptools plyr sp]; }; - spex = derive2 { name="spex"; version="0.4.0"; sha256="0b2zcpbjr8lqfsmwvmy4lp88xz16v7fyqx1yv10yhcgxlgw0yw8p"; depends=[quadmesh raster sp]; }; + spex = derive2 { name="spex"; version="0.5.0"; sha256="0xl6783jgrwqb5vg6x8r2ps7s278qc39nrjl1cj6ikf0x59ffm3r"; depends=[proj4 quadmesh raster sp]; }; spfrontier = derive2 { name="spfrontier"; version="0.2.3"; sha256="0br54kkva4m3yyqfjh3cs5wf4kk3ax6yg0h8cl5qiy38dvssa5qd"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; }; - spgs = derive2 { name="spgs"; version="1.0-1"; sha256="1jabgcc8bd6kikcd5rv9xczbg6r52mwyc68r8filn5i0gva4by57"; depends=[]; }; + spgs = derive2 { name="spgs"; version="1.0-2"; sha256="0cfi5d0cpfj5sfni18xhira807z7sf88c6rpiyml6abrq7vbi5zv"; depends=[]; }; spgwr = derive2 { name="spgwr"; version="0.6-32"; sha256="0xdv0yy6md9kv1aay6xxj1k3x59apflip0qpfvyk2aa2wbn1sx2v"; depends=[sp spData]; }; sphereplot = derive2 { name="sphereplot"; version="1.5"; sha256="1i1p20h95cgw5wqp9bwfs9nygm4dxzsggz08ncjs1xrsvhhq9air"; depends=[rgl]; }; sphet = derive2 { name="sphet"; version="1.7"; sha256="0savvqz3v5awsr7kcghg6yzkqdpm01kwp7jrg9ajfb3146gg8mlq"; depends=[Matrix nlme sp spdep]; }; @@ -11392,25 +11570,26 @@ in with self; { spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; splancs = derive2 { name="splancs"; version="2.01-40"; sha256="0qs3lwyllrkahnvqbm8bzrf03bm9zk4s7p1n19s638y4xf0l6x3r"; depends=[sp]; }; splashr = derive2 { name="splashr"; version="0.4.1"; sha256="1gydnl6qdkqxvgzy3j6n8y4nan4wz6p7wybcgnm5p37n7q6m2rhk"; depends=[curl docker formatR HARtools httr jsonlite lubridate magick openssl purrr scales stringi xml2]; }; - splines2 = derive2 { name="splines2"; version="0.2.7"; sha256="1hh7zd2gqmfc5xx91kjwi465yvq6lwrhgjdim1b40g6canh0ixlb"; depends=[]; }; + splines2 = derive2 { name="splines2"; version="0.2.8"; sha256="0ygzqq0swhcss5v8bn7qg98fpvp3wibbnbzkbpw4nvfd8bg51m1v"; depends=[]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.1"; sha256="0gz65acnkil9xjspl2kzpzyhj7lslga9g3p0k79xh25ia6qal5ws"; depends=[lbfgs]; }; splithalf = derive2 { name="splithalf"; version="0.3.1"; sha256="01ip3brnlyxlxr1hmnmc2w6jg4vm5gjk8fwavclmv7m7hr2bb4xh"; depends=[dplyr tidyr]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.4"; sha256="0vhgb4pysp7hbph7kq8b38m4gqhal40j4p7gij2wrc2rajspzhkq"; depends=[data_table]; }; splm = derive2 { name="splm"; version="1.4-10"; sha256="0zz28mfs84nqyvl1l0ba7yrhgcxxzw1v0542jc39h4pr537yz1nc"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; - splot = derive2 { name="splot"; version="0.3.2"; sha256="1nix7pzqlla3iga99pw9jqcylg4j5xpfrf94y0abzpy3z4gq3kgc"; depends=[]; }; + splot = derive2 { name="splot"; version="0.4.0"; sha256="1g6n10pjjfhxa8sycr1iamwfdhjhp6g2zn5dkynfhg9j7v0dxnyf"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-2"; sha256="11xp6wnxizc8g91ci9fd7lbjc8pin84c9ak8lr8yg2jyd2l351j9"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; }; - splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-137"; sha256="0bpzv6a05hnqnnz2znnkb3f34r56krhc595zjnn82azxj4a53njh"; depends=[]; }; - splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-74"; sha256="0aikw6ckc0a7lrgjlcdmqspgrx0fc4iysd7jynd2lsf1hxy4pz35"; depends=[splusTimeDate]; }; + splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-141"; sha256="1z29djg6az8dl47w0b9fpfwhng74xnbh5bq1asv55i8kdm1a4v1s"; depends=[]; }; + splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-75"; sha256="14bg0yzwk3v0b1qrlfaxv48dpk380ha6wb2w4k02c9vmb51ysmw0"; depends=[splusTimeDate]; }; spm = derive2 { name="spm"; version="1.1.0"; sha256="0xx1g6ir0sanj2p6xgsdghymx1iy2bzsany2j87q49y5hah7349j"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm12r = derive2 { name="spm12r"; version="2.7.4"; sha256="0v0zmsbzk6446n1yipz3w99n0n4yya6idff3gfyj7fgq10pcalgz"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; - spmoran = derive2 { name="spmoran"; version="0.1.3"; sha256="1bvq91k346w2cvb3yi10qgidabf3s8whlk6glqrlb1k6na7l8k3y"; depends=[doParallel fields foreach ggplot2 Matrix vegan]; }; + spmoran = derive2 { name="spmoran"; version="0.1.4"; sha256="0b58c2v57qj14icd577mpsgxwa84lyib4v9qxcbl26im4dhikmfm"; depends=[doParallel fields foreach ggplot2 Matrix vegan]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.1"; sha256="0i77lpxrfa1jxi9znlmn5knmcjpf17q4hf8999b1x8lhqlhiizc1"; depends=[MASS]; }; - spocc = derive2 { name="spocc"; version="0.7.0"; sha256="0ar107c7snbh1iaib3xddng88861h3gc56whicx5krl3zf2xgjqa"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; }; + spocc = derive2 { name="spocc"; version="0.8.0"; sha256="00wm3fkwzcma847kfxliap66sr0i6vfr0kpkvcdjidgk3z51y3bw"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; }; spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; + spotGUI = derive2 { name="spotGUI"; version="0.2.0"; sha256="05x8i1295qjdzyr1ri5c85lgcmj3sahamdwgzknf87dsc9r4hjcz"; depends=[gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyjs smoof SPOT XML]; }; spotifyr = derive2 { name="spotifyr"; version="1.0.0"; sha256="1f7sv6qc8bim8vkcsma96zdzd1ci73dpag2dp27mqjcbh716xfy0"; depends=[dplyr httr lubridate purrr tidyr]; }; spp = derive2 { name="spp"; version="1.15.4"; sha256="0gjg0g30y9w445mimrd29s44ryla1bmh1mdwj4hb85s1yi1l4h25"; depends=[BH caTools Rcpp Rsamtools]; }; sppmix = derive2 { name="sppmix"; version="1.0.2"; sha256="1924lrxjlijlbvjbkkwb3pfa4klg49ph6hz66b7kyy1371wa2b9y"; depends=[fields ggplot2 mvtnorm Rcpp RcppArmadillo rgl spatstat]; }; @@ -11422,21 +11601,21 @@ in with self; { spsann = derive2 { name="spsann"; version="2.1-0"; sha256="0smxkcizs38m84d1d7852hsw699blv6x0n1ma9bi071r9lngljm5"; depends=[pedometrics Rcpp sp SpatialTools]; }; spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; - spsurvey = derive2 { name="spsurvey"; version="3.3"; sha256="1xpjimqkrwm77amqza4713psmg86bvz08gxdi35advq4w614f2w1"; depends=[deldir foreign Hmisc MASS rgeos sp]; }; - spt = derive2 { name="spt"; version="1.13-8-8"; sha256="18s74pxfmsjaj92z2a34nq90caf61s84c616yv33a0xvfvp32qr5"; depends=[]; }; + spsurvey = derive2 { name="spsurvey"; version="3.4"; sha256="0bi2d5jfqbnhhfhs79wid7ksg77vh8r5r8q2g4zbzpjgc9c67lj4"; depends=[deldir foreign Hmisc MASS rgeos sp]; }; + spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; sptemExp = derive2 { name="sptemExp"; version="0.1.1"; sha256="0a4y355j24sll8jmm17lh4j13k21b3nlalsxzpzx2gp5xw1x7jr6"; depends=[automap BayesX BayesXsrc bcv deldir doParallel foreach limSolve ncdf4 plyr R2BayesX raster Rcpp RcppEigen rgdal rgeos sp SpatioTemporal]; }; sptm = derive2 { name="sptm"; version="17.12-7"; sha256="1l5in0jkqg44rr2id3h25jrfbn7x855p31z338hnmdpfwkpm2b1a"; depends=[kyotil survey survival]; }; - spuRs = derive2 { name="spuRs"; version="2.0.1"; sha256="1vjyhm4dvqm5d4kqjiwk7yy85455dgv4sy9kr5427zci3jlmxqij"; depends=[lattice MASS]; }; - spup = derive2 { name="spup"; version="1.2-1"; sha256="05cl4kddg2f37238am92bbkyl5davd2a6jjb1akzn1v3ha6qbhpq"; depends=[gstat magrittr mvtnorm purrr raster whisker]; }; + spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; + spup = derive2 { name="spup"; version="1.3-1"; sha256="0xq9z9iy3bwqhzq783qydgmczxvh7knkk9vdvwnbpbk0rbjgq3kn"; depends=[gstat magrittr mvtnorm purrr raster whisker]; }; sqldf = derive2 { name="sqldf"; version="0.4-11"; sha256="0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"; depends=[chron DBI gsubfn proto RSQLite]; }; sqliter = derive2 { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; - sqlscore = derive2 { name="sqlscore"; version="0.1.2"; sha256="0pl4nf59b8jy8rkqs2z684lxfqh01284h3cx97a1igpy4qqj712b"; depends=[dbplyr]; }; + sqlscore = derive2 { name="sqlscore"; version="0.1.3"; sha256="0043ri91zzl08f47kjkvwqqnb8p7k2qlksg988x1dhna28n519va"; depends=[dbplyr]; }; sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; squash = derive2 { name="squash"; version="1.0.8"; sha256="1x1rw0ny2kas0x8y5vv9czyqmwml7s5d2c8a33vqap0x8q52r4z6"; depends=[]; }; squid = derive2 { name="squid"; version="0.1.1"; sha256="0qv9lazgiqazhq096ybmllalm2l2h794ry4p1r93c10msxg37sdp"; depends=[arm data_table ggplot2 lme4 MASS shiny]; }; sra = derive2 { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; }; srp = derive2 { name="srp"; version="1.0.0"; sha256="10mpyy8q419dw0zd96l0z8lkxpcyn1l5fvnyvr3n0lyl6jmf91sy"; depends=[fda mgcv]; }; - srvyr = derive2 { name="srvyr"; version="0.3.1"; sha256="1xad4n3bpldaaci83mvpfa8sq6bh0ll5k1fgrapwb8142hvk6m13"; depends=[dplyr magrittr rlang survey tibble]; }; + srvyr = derive2 { name="srvyr"; version="0.3.3"; sha256="0xarb92xhsb3c6g45lqq9kgp5yy0y9psi7yrn7yvv1a130lwzs40"; depends=[dplyr magrittr rlang survey tibble]; }; ss3sim = derive2 { name="ss3sim"; version="0.9.5"; sha256="0rdb49bfxvyh0jrqycrv1hxvh7y4kvw81jccjg5ma734x44q0vm5"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; }; ssa = derive2 { name="ssa"; version="1.2.1"; sha256="10x58c57pa9x6svm4h4xrss72ikin9lpf3ihjwmnkgnaicvsd0bx"; depends=[iterators]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; @@ -11445,6 +11624,8 @@ in with self; { ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; ssfit = derive2 { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; + ssgraph = derive2 { name="ssgraph"; version="1.4"; sha256="1k1ignb6gsjwwsqlkxjlr3pm6avzf9z3aj069f6y0hglz3g74qv0"; depends=[BDgraph igraph Matrix]; }; + ssh = derive2 { name="ssh"; version="0.2"; sha256="12v5yfkaqlbixifw6sfdbjw88fc604sryg4ygml7k383nr8rpklf"; depends=[getPass]; }; ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.2.9"; sha256="1916r0hmhpfa0p1s8myqk8g4i8fgjqkm4wvpb4nf3sl69kfdva95"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; @@ -11456,14 +11637,17 @@ in with self; { sspse = derive2 { name="sspse"; version="0.5-5"; sha256="07656miqrv9g5nn3ahyfj7wb010cwkr3qjhysbsih0p43dwczq0y"; depends=[coda]; }; ssrm_logmer = derive2 { name="ssrm.logmer"; version="0.1"; sha256="1i9rrsixl3swd04w1gf9gf1r2wb9nkvwhc8ld4bx4zxzm1031f67"; depends=[sfsmisc statmod]; }; sss = derive2 { name="sss"; version="0.1-0"; sha256="1qg56g60h8c52l8lpxihxsdgnqkxiag1mzh3p388r9hhff7g3g0k"; depends=[assertthat xml2]; }; + sssc = derive2 { name="sssc"; version="1.0.0"; sha256="00m5zfd3jnbxa8x76v4pfyl4qdfq90n8rqx4hngany0ka1z5g7m6"; depends=[changepoint e1071 ggplot2 VGAM]; }; + sstModel = derive2 { name="sstModel"; version="1.0.0"; sha256="04dvj6dbxidn1df2rslppl2pw2ql09rag39jrzdbnv6z20szbbd9"; depends=[data_table MASS openxlsx readxl shiny shinydashboard]; }; ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.5"; sha256="0dnyfjcz37gjjv87nrabb11gw2dlkqhq3mrxdpkzahx0w0g0q0pb"; depends=[corpcor fdrtool sda]; }; - stR = derive2 { name="stR"; version="0.3"; sha256="0zad25s9wp4lapkww3rdbqsd4y7p8xhz9is7avq400srxakinx7n"; depends=[foreach forecast Matrix quantreg rgl SparseM]; }; - staRdom = derive2 { name="staRdom"; version="1.0.3"; sha256="07ciabm0wakzdybhgdmiakdh7mygc38c8vqs9czgq65729928aqq"; depends=[doParallel dplyr drc eemR foreach GGally ggplot2 multiway plotly pracma readr stringr tibble tidyr zoo]; }; + stR = derive2 { name="stR"; version="0.4"; sha256="120k8k1l8cfy8x746808jym7lnaplgh4s3lycgyq2wia2c35r0rc"; depends=[foreach forecast Matrix quantreg rgl SparseM]; }; + stUPscales = derive2 { name="stUPscales"; version="1.0.3.1"; sha256="0qs8lj50jrkyh4dmiinpg6dxfs68x6zlp0knr2ckpgik3v51r52z"; depends=[data_table doParallel EmiStatR foreach ggplot2 hydroGOF lattice lmom mAr moments msm xts zoo]; }; + staRdom = derive2 { name="staRdom"; version="1.0.8"; sha256="15khv32jbhjq73kr60al39ppf4pps7n48220jhp7sc04fcbi8fwd"; depends=[data_table doParallel dplyr drc eemR foreach GGally ggplot2 matrixStats multiway plotly pracma readr stringr tibble tidyr zoo]; }; staTools = derive2 { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; }; stability = derive2 { name="stability"; version="0.2.0"; sha256="154dp26aghznibnp9h7j86hi30caylvyxp87jkf2p7cb4l3qn5r4"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; - stable = derive2 { name="stable"; version="1.1.2"; sha256="11irpn0qfblzskdr71991jlmdrbqqqpszppn5pii3lr5hflqqr1d"; depends=[rmutil]; }; + stable = derive2 { name="stable"; version="1.1.3"; sha256="1fbyba91qi536mbb7hs6bvi1zgwdjvnv6ih7ykyyhkxk85cmfmq3"; depends=[rmutil stabledist]; }; stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; stablespec = derive2 { name="stablespec"; version="0.3.0"; sha256="0m143cq0baj2lyakhr31mqk2lg78jzpdlpv2bhwz6bzzip7mqi22"; depends=[foreach ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; stabs = derive2 { name="stabs"; version="0.6-3"; sha256="17sa0sjxf6h7gx1ga1pxhv17yrz3qisaivbf5cbc3asvshhswqg9"; depends=[]; }; @@ -11475,8 +11659,8 @@ in with self; { stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; standardize = derive2 { name="standardize"; version="0.2.1"; sha256="0ijyqy09fl478cvqnqwv7fpdmf2yvihw18abkkmgwdnm2v3xqphp"; depends=[lme4 MASS stringr]; }; stapler = derive2 { name="stapler"; version="0.6.5"; sha256="0xhwlm3iyxxmaaf0smj8g5zdawb51d7dc636czbvk5g551g7wfdb"; depends=[matrixStats RNifti]; }; - staplr = derive2 { name="staplr"; version="1.1.0"; sha256="08kk1zi89ggyli05y7lr1vhq4xszjp6z5jscaaknp38gav7jd5lc"; depends=[]; }; - stargazer = derive2 { name="stargazer"; version="5.2.1"; sha256="1nfmb8qka6qxhjagk1a9am43dgnp39fy4cjbygivzp2hlzy22f46"; depends=[]; }; + staplr = derive2 { name="staplr"; version="2.2.0"; sha256="0h75v8mxz1i9fi31pim7xpbsji8fjj3swp69m9yn75qv76bgjjxx"; depends=[assertthat stringr]; }; + stargazer = derive2 { name="stargazer"; version="5.2.2"; sha256="1pij76r60hkjlvxw6zw1v7gkib81smiqmjq7mwszn6xclq9lmsvh"; depends=[]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starmie = derive2 { name="starmie"; version="0.1.2"; sha256="06cvl8gk78c55kcf4rd27d4gfzh2lcg7ldynvx4hclvbw7ak9zdq"; depends=[combinat data_table ggdendro ggplot2 ggrepel gridExtra iterpc label_switching MCL MCMCpack proxy purrr readr stringr tidyr]; }; startR = derive2 { name="startR"; version="0.0.1"; sha256="12y57n3yip5rz4rln41896a15zv5b4c67k164282fh1p6ww9gr3r"; depends=[abind bigmemory future]; }; @@ -11484,29 +11668,30 @@ in with self; { startupmsg = derive2 { name="startupmsg"; version="0.9.4"; sha256="1r9dqrfznsrj7s11m56hkzgfnw3qcgzh07pqipl007zr2av9xwqw"; depends=[]; }; statGraph = derive2 { name="statGraph"; version="0.1.0"; sha256="13wfylb92lzw08fn3p000v87abs7ij2rb82np1rkgsl8w2kica73"; depends=[igraph MASS]; }; statar = derive2 { name="statar"; version="0.6.5"; sha256="0vmdrdq6db16vfl0rb39x8yfnbdzpcrvywfgp4lss6jby3nvjwd9"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyr]; }; - statcheck = derive2 { name="statcheck"; version="1.2.2"; sha256="0bcv8klp75q8hlmwhax9lxx9i0kbhsz8442acbhxh5fn2pn2x9jm"; depends=[ggplot2 plyr]; }; - statcomp = derive2 { name="statcomp"; version="0.0.1.1000"; sha256="0ac4s8a955ka0rs2a3k93aq2cxzrc48ai0sl9kn4yaqcw1arv2ap"; depends=[zoo]; }; + statcheck = derive2 { name="statcheck"; version="1.3.0"; sha256="0ivybdcrymlsfv6pg6p5bv70qdvgxf2vgp0kf4r0pf2fcvav1mcp"; depends=[ggplot2 plyr rmarkdown]; }; statebins = derive2 { name="statebins"; version="1.2.2"; sha256="0qfs796dk5x983qah32w3npv9mxzljp3g7kffdd0ansn3z7i1zbb"; depends=[ggplot2 gridExtra RColorBrewer scales]; }; - states = derive2 { name="states"; version="0.2.0"; sha256="0gwisvzww7jl0n5ck8rnnw4ikr8gyq94m3362sdjmic9h7318f03"; depends=[dplyr lubridate]; }; + states = derive2 { name="states"; version="0.2.1"; sha256="1f0cwv1jkl4nw0p31p147g71nira5f4hwq8lhjnmns28xq04by24"; depends=[dplyr lubridate]; }; statesRcontiguous = derive2 { name="statesRcontiguous"; version="0.1.0"; sha256="0yzi6ycfj4cc4q0zzzckdz65wp9m4yx6fi7kp9nssj9pj6a8xlrp"; depends=[dplyr magrittr sf]; }; stationaRy = derive2 { name="stationaRy"; version="0.4.1"; sha256="1iyzg40vi1l4s68kh50in1p97pcb28z6n932cgrx5k1rv3api13g"; depends=[downloader dplyr leaflet lubridate plyr progress readr stringr]; }; statip = derive2 { name="statip"; version="0.1.5"; sha256="1gyn86kg96yrs9drc23xabf4s8ii32hgjla310sy6pd7c97bwqgf"; depends=[bazar dplyr]; }; statmod = derive2 { name="statmod"; version="1.4.30"; sha256="07v4x8af60alcw6vbiwf5fp25bhra61kvxz9kqx64lszm0i1fb4x"; depends=[]; }; statnet = derive2 { name="statnet"; version="2016.9"; sha256="1j5z7awvac3sb66ma1lrc9j23m6hmzqfnqxc0znsm36h324y3y6s"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm]; }; - statnet_common = derive2 { name="statnet.common"; version="4.0.0"; sha256="0yw6l5b4qv0jqlg4zyczas7m12a5pyqghs6ydxy2f6v6vxkijvi0"; depends=[]; }; + statnet_common = derive2 { name="statnet.common"; version="4.1.4"; sha256="14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic"; depends=[coda]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.4.0"; sha256="0gqvvpz9435wakpgf5jsznwgd3fix1vyabh87bnnfsm3pfs7rf2x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; - statprograms = derive2 { name="statprograms"; version="0.1.0"; sha256="1jm8vnzccx34rhypkc5brx52k0f0g4z9cckzib43i5fcqd4skib6"; depends=[]; }; + statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; statsDK = derive2 { name="statsDK"; version="0.1.1"; sha256="0insx4sivac0nfxaa11iz9dd7374g51fcndsgljj3f14zw1xyq66"; depends=[dplyr ggplot2 httr jsonlite lubridate readr stringr tibble tidyr]; }; + statsr = derive2 { name="statsr"; version="0.1-0"; sha256="1z0wfj1jxz02x7vl6sr651v85k88wg8rx0k2kkrwzc4ynim8shms"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tidyr]; }; stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; stdReg = derive2 { name="stdReg"; version="3.0.0"; sha256="0mjn2zvpadxm3q5kw4v3jpfmx94chjxdf8n1m7c4dm7gfaj0q38x"; depends=[data_table drgee numDeriv survival]; }; stddiff = derive2 { name="stddiff"; version="2.0"; sha256="0mik01a8agcdpjq4r7lcdf3w2jcy6s9gx9zl7plzvnl2r3s5xw5b"; depends=[]; }; stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; + steemr = derive2 { name="steemr"; version="0.0.4"; sha256="10x90l00mq1aq7xf69vl7lpax0gl9grq182ixp3iwn3pa1wifmpm"; depends=[lattice openair RCurl rlist tm VennDiagram wordcloud XML zoo]; }; steepness = derive2 { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; stellaR = derive2 { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; }; stellaRbase = derive2 { name="stellaRbase"; version="0.1.0"; sha256="1jwhh14wk57z8acg8vjd7m3nwq0vq4w0x9ml8zhk3gnl4czq8m04"; depends=[data_table httr RJSONIO]; }; - stepPenal = derive2 { name="stepPenal"; version="0.1"; sha256="09viapb4846g91jzf9364rdyd865b19v83pwcdm3p3xsjry9ffxk"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; + stemmatology = derive2 { name="stemmatology"; version="0.3.1"; sha256="1ln5cvn4yldr8xdgadlfzkgxbv6im39mdsdz597zailqnfsr576g"; depends=[cluster igraph xml2]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; stepR = derive2 { name="stepR"; version="2.0-2"; sha256="0inxlgihyivfr0l4gk8zq0043l9s5w4r3x3hwjlzfwbqjkwy1rjs"; depends=[digest R_cache Rcpp]; }; stepp = derive2 { name="stepp"; version="3.0-11"; sha256="0jrwfvcgh3sjm3zag93kjyny2qqsyiw988vnx6jw7s31bv9g0d6s"; depends=[car survival]; }; @@ -11520,21 +11705,21 @@ in with self; { stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; stmgp = derive2 { name="stmgp"; version="1.0"; sha256="1v6ahg4icyrz8p0lfiyi2x90allhjvcq8rycinas5mffg7xgpv7d"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; - stminsights = derive2 { name="stminsights"; version="0.1.2"; sha256="17vpkrhhv8k5wyyrnc2hza175p51yl2nghvv9y2ymq27x4r2xq5c"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; + stminsights = derive2 { name="stminsights"; version="0.2.0"; sha256="0s4gnb3cb5vb4x4vmwa2dz7l7m8d0mqhrc8lmaa912s16y05y63z"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; stoRy = derive2 { name="stoRy"; version="0.1.2"; sha256="1n2ivdv6fa3qkk2xhgcy8cixpbw6mijr4p8q34q8d9fvh9qs9g11"; depends=[data_tree R6]; }; stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochprofML = derive2 { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; stochvol = derive2 { name="stochvol"; version="1.3.3"; sha256="0cg61djjfw4jmq71g8kddrihdy9n2vlpzlf7kl2f3p8njc1f8kk2"; depends=[coda Rcpp RcppArmadillo]; }; - stocks = derive2 { name="stocks"; version="1.1.2"; sha256="1i77cg4vmmc362ixqqkz48wipsszmb1z8pjrh713d27726nhj3ig"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp zoo]; }; + stockR = derive2 { name="stockR"; version="1.0.68"; sha256="0pgyxh19csv21vgji1sjpqaaqb1wwz62mnsf85a97ba9aph9lxwb"; depends=[gtools]; }; + stocks = derive2 { name="stocks"; version="1.1.3"; sha256="0zpmx32dxv672ifk1m725ww286g4r09dvxvnk146vpwlk4mk11d0"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; stopwords = derive2 { name="stopwords"; version="0.9.0"; sha256="050v3hq1wd3w83zrp76nv6n67qsf5fss2cbihb6waijancm7zfzh"; depends=[ISOcodes]; }; stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.0"; sha256="1pxkb0ijx04c4bk6szxhj8lxq6x76m8pyhxpf8xq63h4gh57fxh3"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; }; - storr = derive2 { name="storr"; version="1.1.3"; sha256="0rmljnlnbi5jdxbh5mzxgkq9aa3mm46kl04jlasyng8pv3prxj1v"; depends=[digest R6]; }; - stosim = derive2 { name="stosim"; version="0.0.12"; sha256="0c4sj5iirm542hx782izfdmy2m3kl5q28l10xjj0ib4xn5y6yx3c"; depends=[Rcpp tcltk2]; }; - stplanr = derive2 { name="stplanr"; version="0.2.3"; sha256="1h6vflcb9pmfl2h3rny3p79isrd5gkp0cblvwi2yfvxi2ll5axp9"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; }; - stpm = derive2 { name="stpm"; version="1.6.8"; sha256="0gifkrpp8n4r31i4dfvjfq7w0l6jfid43i94ygqwwv0ca583aw4y"; depends=[mice nloptr Rcpp RcppArmadillo sas7bdat survival]; }; + storr = derive2 { name="storr"; version="1.2.0"; sha256="0rsj84yfvy3y02cv0s25fq6ji4rfh7nnrpacbka0lhrxf698h5ga"; depends=[digest R6]; }; + stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; + stplanr = derive2 { name="stplanr"; version="0.2.5"; sha256="0r386bvsmglap6cxs6k3mn8bdahlbxb3qv2k4iqg2fr2r62dalf7"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; }; + stpm = derive2 { name="stpm"; version="1.6.9"; sha256="1pj8lxych7fgrimi5c237f4vi6yc51ya3zwcq0qk3py96nixcpxn"; depends=[knitcitations nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-3"; sha256="18icnfrlrcibrpw7vqkrhzfx880ak24xk6llwgiqw18r929mq1hw"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat splancs]; }; - stppResid = derive2 { name="stppResid"; version="1.1"; sha256="0hgzsyy5y0sqd4d2agdr7p2kq0w51vs8f63dvj6j49h8cvgiws2x"; depends=[cubature deldir splancs]; }; strandCet = derive2 { name="strandCet"; version="1.0"; sha256="019cacj0g9f6i8v03rq7qyph7f14d8n0qw0axvczijvnk99q602a"; depends=[boot corpcor MASS minpack_lm mvtnorm numDeriv]; }; stranger = derive2 { name="stranger"; version="0.3.3"; sha256="0p0ssba5q192g7pviv1shmh1lpcdjmzdim3rp1qs3hrd1d3pn4vq"; depends=[assertthat data_table dplyr ggplot2 tidyr]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; @@ -11545,18 +11730,17 @@ in with self; { stratification = derive2 { name="stratification"; version="2.2-6"; sha256="1jlks3g8wpqlpci6v0ryyv93agiabdiklmk6ij0pc5icrfiynbhw"; depends=[]; }; stratifyR = derive2 { name="stratifyR"; version="1.0-1"; sha256="0w135smkgryx29ppa7khpay8w04b3g2pxka0wsqlhksrp5pqa086"; depends=[actuar fitdistrplus mc2d triangle zipfR]; }; stratvns = derive2 { name="stratvns"; version="1.0"; sha256="1bw9l389lxiji4h7hrsshf24v135h6la9dg3xxjly53d4fi56ifh"; depends=[MultAlloc Rglpk sampling snowfall stratification]; }; - straweib = derive2 { name="straweib"; version="1.0"; sha256="0bh2f4n4i7fiki52sa57v96757qw1gn1lcn7vgxmc5hk5rzp2mi8"; depends=[]; }; - stream = derive2 { name="stream"; version="1.2-4"; sha256="1xk9lnvf9xld74z4sxbwpgxl7cbni88cjyxqzxr0r9pn9vcpwima"; depends=[animation clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; + stream = derive2 { name="stream"; version="1.3-0"; sha256="0wj6j070wmiw50vmjs075jm7k7aaryq4qm8dnj522vr7g0ryvkdh"; depends=[animation BH clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; streamMOA = derive2 { name="streamMOA"; version="1.1-4"; sha256="09vspcz806j2f397hr8h685vy4xbx419bbha91f44s3bhks1y7fr"; depends=[rJava stream]; }; - streamR = derive2 { name="streamR"; version="0.2.1"; sha256="1ml33mj7zqlzfyyam23xk5d25jkm3qr7rfj2kc5j5vgsih6kr0gl"; depends=[RCurl rjson]; }; + streamR = derive2 { name="streamR"; version="0.4.3"; sha256="174iliizvr050mm3z9gz44f264xp1kclbvq1amynqal2kv8k7yj1"; depends=[ndjson RCurl rjson]; }; streambugs = derive2 { name="streambugs"; version="1.0"; sha256="1dyh5rwi47dn584nyy7f7vg5j5nlpz7ygcl8lwkj7prahplmzg5d"; depends=[deSolve]; }; stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; strider = derive2 { name="strider"; version="1.1"; sha256="00r6gbvwmla5h27iyi7rdfd0kr4alxz19fd7g2ba0in3779za3sw"; depends=[BH Rcpp]; }; stringb = derive2 { name="stringb"; version="0.1.13"; sha256="004bp75yhrgr480v9774kfq7z5l9z0761cnrwj4yk7fxygk89a1x"; depends=[backports]; }; - stringdist = derive2 { name="stringdist"; version="0.9.4.7"; sha256="1qg80wmcrpkba9njvgjdg15bgw7ddks40kkfh5x61as9lhchy4i4"; depends=[]; }; + stringdist = derive2 { name="stringdist"; version="0.9.5.1"; sha256="0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa"; depends=[]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; - stringi = derive2 { name="stringi"; version="1.1.7"; sha256="0nck1s2iglmkrn15ay2chrrwsy5lngcylz2sc87fxy5skxaahxdl"; depends=[]; }; - stringr = derive2 { name="stringr"; version="1.3.0"; sha256="07dvfbkhv8gk6l32j43jvxpmqlhqp0mdby406h5a3bsc6k94ic13"; depends=[glue magrittr stringi]; }; + stringi = derive2 { name="stringi"; version="1.2.3"; sha256="1sgg4krw03qkz1n4dwiya0djggk7giwd0w21qlp0pfjqi0rxq6qx"; depends=[]; }; + stringr = derive2 { name="stringr"; version="1.3.1"; sha256="0hq3ybz7clnifi5wdm2s6p2i0kzljdkv26blg6yphng472h8x2vs"; depends=[glue magrittr stringi]; }; strip = derive2 { name="strip"; version="0.1.1"; sha256="18pz6ix6d661fvg1k1yyyiiwa1gdixynmpxl725ffd9lpykmfqbw"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; striprtf = derive2 { name="striprtf"; version="0.5.1"; sha256="1pv67grm8fb1plsfxrfrmv0yk6cjnf44ssawddlcxy9mvg3ka5mm"; depends=[magrittr Rcpp stringr]; }; @@ -11568,8 +11752,8 @@ in with self; { stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; }; stsm_class = derive2 { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; }; stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; }; - styler = derive2 { name="styler"; version="1.0.1"; sha256="01iy3p0jn57c2glq2a5wh7ds3fyxlmcjpvxnmafvvvlhca73zw88"; depends=[backports cli enc magrittr purrr rematch2 rlang rprojroot tibble withr]; }; - stylo = derive2 { name="stylo"; version="0.6.6"; sha256="01kkwzhpcf6nrvbj2dgyh2a10p48gxlgq78smv5x8cn8vcfl1ixa"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; + styler = derive2 { name="styler"; version="1.0.2"; sha256="0rsbaszwr0089imcwracjss52ivjzlcba9j0sqvpza4qgd0yjmd4"; depends=[backports cli enc magrittr purrr rematch2 rlang rprojroot tibble withr]; }; + stylo = derive2 { name="stylo"; version="0.6.7"; sha256="0l5msnv6sk90p3l7ma2q31yn93y1zj86y5hzzg2fws4r0pi09p19"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; subcopem2D = derive2 { name="subcopem2D"; version="1.2"; sha256="1yrjqg3y6i5m6k0zljq1p1pciicmc1vig3qd0wxaicz708rbp3yq"; depends=[]; }; subdetect = derive2 { name="subdetect"; version="1.1"; sha256="1bcc13avs5w9vmwyf71cnjd2kwmcavmzpwyv8gvsn61n7b4j8wlk"; depends=[]; }; @@ -11580,10 +11764,10 @@ in with self; { subniche = derive2 { name="subniche"; version="0.9.7"; sha256="1jsdcaf6d38j7c0ppjyilj0jd2dbpdldw6w4prmsbmx8mh7lplww"; depends=[ade4]; }; subplex = derive2 { name="subplex"; version="1.5-4"; sha256="10cbgbx1bgsax5z7gz6716g360xpq4mvq19cf4qqrxv02mmwz57z"; depends=[]; }; subprocess = derive2 { name="subprocess"; version="0.8.2"; sha256="1qyl8726vq94vqd6iyh9kca6wwxi3g7yv4b784wn2ifrm4waixxd"; depends=[]; }; - subrank = derive2 { name="subrank"; version="0.9.9"; sha256="1z6sp9rfmpy28gpw13bh0c7y98lbbgv1cciavg3gix01whqa49n3"; depends=[]; }; + subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="2.0"; sha256="1vscmzw6ama2kc7ic6b2rfbbczcpyhp0m4dd5khg9vkyihww5b5h"; depends=[CTT irtoys]; }; - subscreen = derive2 { name="subscreen"; version="0.2.2"; sha256="08s8ys0ban80xbyfzjimbgld4622c5bn0qwjmsa7g0dn5ss3ccq9"; depends=[data_table plyr]; }; + subscreen = derive2 { name="subscreen"; version="1.0.0"; sha256="04xkmiwwf0jaf4ij6kwbivrpy94hk030zcsm8jgf7xq5pb7rf5kr"; depends=[data_table DT plyr shiny]; }; subselect = derive2 { name="subselect"; version="0.14"; sha256="03sfnpj219a0ma92c2z953bh2y6s7w2c84lf2shnghmmxmg7jq9l"; depends=[corpcor ISwR MASS]; }; subsemble = derive2 { name="subsemble"; version="0.0.9"; sha256="0vzjmxpdwagqb9p2r4f2xyghmrprx3nk58bd6zfskdgj0ymfgz5z"; depends=[SuperLearner]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; @@ -11591,12 +11775,13 @@ in with self; { subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-11"; sha256="1hv9d99ir1xz6p0arxr77dv5qb45sr8jhapm6wf755l7pxlqqklq"; depends=[magrittr]; }; - sugrrants = derive2 { name="sugrrants"; version="0.1.1"; sha256="08f5xdgimdvpivzrlwvdyrmy21nbh379pgfdrx4lxqcxd55y2hil"; depends=[dplyr ggplot2 lubridate purrr readr rlang tidyr timeDate]; }; + sugrrants = derive2 { name="sugrrants"; version="0.1.2"; sha256="0l9v2wqb8wsp002gc802xcawwyv56rn765ipp6d1mzds3sp438h7"; depends=[dplyr ggplot2 lubridate purrr readr rlang tidyr timeDate tsibble]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.0.0"; sha256="13g3px3c3dxacrvgwrvqdp8lm7k185npr0dlq3siq9x9mgjr7hsj"; depends=[Matrix]; }; summariser = derive2 { name="summariser"; version="0.1.0"; sha256="0a6wyb0r1i0cynld002q96ylr58jz76n5jqjz8gm6a3csjn9qss7"; depends=[dplyr ggplot2 lazyeval plotrix]; }; - summarytools = derive2 { name="summarytools"; version="0.8.3"; sha256="0b61131yns1ip4r5qgrfbwd6dqsgg349jfhlgfkvlszh5b9jqhnf"; depends=[htmltools matrixStats pander pryr rapportools RCurl]; }; + summarytools = derive2 { name="summarytools"; version="0.8.5"; sha256="0455csyz3hd9armpw18r1lgbzbyr6i43wyampp4n0s0lr95flp46"; depends=[htmltools lubridate matrixStats pander pryr rapportools RCurl]; }; sunburstR = derive2 { name="sunburstR"; version="2.0.0"; sha256="1gkrgm90ps5i1k5cqdw6sbvd4jgbk4yq82gwd5m1z1jhv1shfsf4"; depends=[d3r dplyr htmltools htmlwidgets]; }; suncalc = derive2 { name="suncalc"; version="0.4"; sha256="190bnh26bl26piq6512ijrx2hygzdscryjsjyz8y4ara8bf646r3"; depends=[V8]; }; + sundialr = derive2 { name="sundialr"; version="0.1.0"; sha256="0r6nijpj6vbz9ssrdhxn01frhahnqg4n1bsfg6d43c1smj563y6m"; depends=[Rcpp]; }; supc = derive2 { name="supc"; version="0.1"; sha256="1cq0lr04m409xr3i1hphww4ldr8z3kqq2gmp7hm3yp0iz2gy3m9a"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; @@ -11604,11 +11789,12 @@ in with self; { superbiclust = derive2 { name="superbiclust"; version="1.1"; sha256="1gzjbzbl8y1nzdfhyd6dlrwjq8mwj43a26qav84s1bdzwx6dra48"; depends=[biclust fabia Matrix]; }; superdiag = derive2 { name="superdiag"; version="1.1"; sha256="0pa3mv74riabpm7j4587zww2364fszzlw48ijj1apcgz8y6pyqbw"; depends=[boa coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; - supernova = derive2 { name="supernova"; version="1.0"; sha256="18hyfq7gqx9n4s95yymkazyif9gzscrgfckis0s7hbban08iimpr"; depends=[]; }; + supernova = derive2 { name="supernova"; version="1.1"; sha256="0n34fkscml6ldbcr6kk8c6n4f5z4j398qn1vsp06h3b0h6sl5rrb"; depends=[]; }; superpc = derive2 { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; + support = derive2 { name="support"; version="0.1.1"; sha256="0031dqkjwsi7s7bmvidjnivqxlh43q0ak2jnqnzm8h7sp0kfwjwf"; depends=[BH doParallel matrixStats MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; }; support_BWS = derive2 { name="support.BWS"; version="0.2-0"; sha256="1yfjpr9v9zsbkysm3r6zk9r0a072g038lmj9wk4014a3rk9kmm80"; depends=[]; }; - support_BWS2 = derive2 { name="support.BWS2"; version="0.1-1"; sha256="1jay1ak8242vn9a0ippfdd48vdxqqz9j8frbgf5ncffdmzzn1n21"; depends=[]; }; + support_BWS2 = derive2 { name="support.BWS2"; version="0.1-2"; sha256="069n7kxl74v42rjxb153yk1p81izkbvi7k6r8zd5d78jx54w7igb"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; }; @@ -11618,17 +11804,19 @@ in with self; { survAUC = derive2 { name="survAUC"; version="1.0-5"; sha256="0bcj982ib1h0sjql09zbvx3h1m96jy9q37krmk6kfzw25ms6bzzr"; depends=[survival]; }; survAWKMT2 = derive2 { name="survAWKMT2"; version="1.0.0"; sha256="1cv39rf1ia4nwrri9d9izy6lxndnfwqy2vzrb9rrxga2qplxl79k"; depends=[survival]; }; survAccuracyMeasures = derive2 { name="survAccuracyMeasures"; version="1.2"; sha256="1i41xkvqpxpq9spryh1syp57ymlzw71ygdjqn41rv8jjc9q52x9g"; depends=[Rcpp RcppArmadillo survival]; }; + survBootOutliers = derive2 { name="survBootOutliers"; version="1.0"; sha256="1gfh2n1kd1m4bpd1j7islm5ar1qmzycnmfpb8zl8ghv0z5rf5f09"; depends=[survival]; }; survC1 = derive2 { name="survC1"; version="1.0-2"; sha256="1bidjhq3k5ab7gqj1b2afngip7pp6c9c7q0m6ww7h7i2vg505l7v"; depends=[survival]; }; survClip = derive2 { name="survClip"; version="0.2.3"; sha256="1s82z8cld6qlg6dv0l4j4vyg58ji9qp7xkg6sxd9s88fpcjdnz3g"; depends=[checkmate clipper corpcor elasticnet FactoMineR graph qpgraph rrcov survival]; }; survHE = derive2 { name="survHE"; version="1.0.6"; sha256="128pjnm1m12qqhnz2izwmir64m99389qjr73vcqr19dgbkbgv28c"; depends=[BH flexsurv Rcpp RcppEigen rms rstan StanHeaders xlsx]; }; survIDINRI = derive2 { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survC1 survival]; }; survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; - survMisc = derive2 { name="survMisc"; version="0.5.4"; sha256="1m24vnhxk410h117mz056j8xkhp1ivjn5wvpprc0rqnd374z6c84"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; + survMisc = derive2 { name="survMisc"; version="0.5.5"; sha256="00nvvl8gz4477ab24rd0xvfksm8msv8h021b9ld5c9cizc41n2bm"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; survPresmooth = derive2 { name="survPresmooth"; version="1.1-10"; sha256="0m1037v857g140lypck5zq2zf52rkdxzaqlj9kjn7h7lp6gif6ia"; depends=[]; }; survRM2 = derive2 { name="survRM2"; version="1.0-2"; sha256="0pvp65c1kkbkcci4l3cvq4a5krmv58jwb9abz5225ql6jyawzlsw"; depends=[survival]; }; + survRM2adapt = derive2 { name="survRM2adapt"; version="1.0-1"; sha256="1r3jvjbc2sb7b00s95b3sdx4d99rmrnd573fx1n4914ydiggi9nn"; depends=[survival]; }; survSNP = derive2 { name="survSNP"; version="0.24"; sha256="0mzwcp8zfqvsiapa446si9qb6wyymnw5zj6acj6f2cfjpyi76k4w"; depends=[foreach lattice Rcpp survival xtable]; }; - surveillance = derive2 { name="surveillance"; version="1.16.0"; sha256="1nbskhbs8qfwnchig4rckbgy296ifl1hx0w3v71knj693x54r9cj"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; + surveillance = derive2 { name="surveillance"; version="1.16.1"; sha256="0pr6fy0n684ncl9hf0bp6jfahmihziyyfj2zwnqigkc4bcl091h3"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; survey = derive2 { name="survey"; version="3.33-2"; sha256="1c4q0005663b0y87ckmf1ra7gm2i5hnlw955pgb11bywh60hg9hl"; depends=[lattice Matrix survival]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; }; @@ -11637,30 +11825,30 @@ in with self; { surveyoutliers = derive2 { name="surveyoutliers"; version="0.1"; sha256="03nqw0zir3x57gg23hgsr2s99pv958kfsygqfwly96rvfdhr5p3v"; depends=[]; }; surveyplanning = derive2 { name="surveyplanning"; version="2.9"; sha256="0ad4122m78hbzhkkaspzpr62bl59w1j8z0qa67slqljjldhq1akv"; depends=[data_table laeken]; }; survidm = derive2 { name="survidm"; version="1.1.0"; sha256="1piwhb8zsqnw284xp0l3ajs8r9amyn8yfng19hkci574mkdgsw4f"; depends=[doParallel doRNG foreach KernSmooth np survival TPmsm]; }; - survivALL = derive2 { name="survivALL"; version="0.9.2"; sha256="0mqmlmip6lr1d6i8yj4kc1zzj5jvvqrkipqxlprsrqbwni2ipp7l"; depends=[cowplot desiR ggplot2 ggthemes survcomp survival viridis]; }; - survival = derive2 { name="survival"; version="2.42-3"; sha256="15pasbfzmg2r5bfpsadp9ia4cpybqz6n1kwm7ma02ykzf7bk4xx0"; depends=[Matrix]; }; + survivALL = derive2 { name="survivALL"; version="0.9.3"; sha256="0lnvs7b097sl21gvnfafdprzvh197p1q4nzzagkdf4xm1xw8pj0h"; depends=[cowplot desiR ggplot2 ggthemes survcomp survival viridis]; }; + survival = derive2 { name="survival"; version="2.42-4"; sha256="0gnv6r6qrapw867gb9napa8f00dm15aw97lgn6556mn9i9k6d0k7"; depends=[Matrix]; }; survivalMPL = derive2 { name="survivalMPL"; version="0.2"; sha256="05bfa9fx841kh9g2jcs1dimsxkjnf4bxgamcnjpisx3a644c1gkn"; depends=[MASS survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; survminer = derive2 { name="survminer"; version="0.4.2"; sha256="15npx3q7xf7sl7pbb1476khgfpqrvidqcb101iim3iym125sl54r"; depends=[broom cmprsk dplyr ggplot2 ggpubr gridExtra magrittr maxstat purrr scales survival survMisc tibble tidyr]; }; - survsim = derive2 { name="survsim"; version="1.1.4"; sha256="16njbqlzmk34zrh485kc0a52yacdyj9z4z4a9zcq1z5psm87c58m"; depends=[eha statmod]; }; + survsim = derive2 { name="survsim"; version="1.1.5"; sha256="0194w1h3v4p546wibp3xyhy2r84w3p9r6ggzhlf11v8467mjy0l9"; depends=[eha statmod]; }; survtmle = derive2 { name="survtmle"; version="1.1.0"; sha256="0q1ym4a13xqy3lqjwg40wp28xlp1iqybwq7dd0gp6fnmx3n6373g"; depends=[dplyr ggplot2 ggsci Matrix plyr speedglm stringr SuperLearner tidyr]; }; survutils = derive2 { name="survutils"; version="1.0.1"; sha256="09844i5nfyn0fm5i8ca96xz8dza21shh2f89w41zh17xaxvidjsw"; depends=[broom dplyr ggplot2 glue lazyeval magrittr purrr survC1 survival]; }; sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; }; - svDialogs = derive2 { name="svDialogs"; version="0.9-57"; sha256="1qwnimzqz7jam3jnhpr90bgwp9zlsswy2jl17brdpsrpiwcg6jlr"; depends=[svGUI]; }; + svDialogs = derive2 { name="svDialogs"; version="1.0.0"; sha256="0xqppydfawnwk84kb5qiybwbcmv38vn4imgz01mz2pnq4xb80p97"; depends=[rstudioapi svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; }; - svGUI = derive2 { name="svGUI"; version="0.9-55"; sha256="1fkkc12mhcbn3s2wzk0xdsp8jl2xmn48ys2an8jhxbww3gplk1rq"; depends=[]; }; + svGUI = derive2 { name="svGUI"; version="1.0.0"; sha256="1r7ab0p4yr8q03gj02hmj7k1ghksgkg4nx750c0ajfs2q9y1dxfc"; depends=[]; }; svHttp = derive2 { name="svHttp"; version="0.9-55"; sha256="0qxsh6ifk3fszgzz497qwia4pxzplwraf2qnn5cqlv5l79nja5yq"; depends=[svMisc]; }; - svIDE = derive2 { name="svIDE"; version="0.9-52"; sha256="19wsmi1i7nlnqdah1h2pxzsy8m50bnb282fdbj4219p86bb92a86"; depends=[svMisc XML]; }; + svIDE = derive2 { name="svIDE"; version="0.9-54"; sha256="1a03xpjx22xhxfqkgcm1pmal0dlp544hvnckj0p6sy4y56hmsfik"; depends=[svMisc XML]; }; svKomodo = derive2 { name="svKomodo"; version="0.9-63"; sha256="0x2774lhckhg8kw6plsn6dpks3b3fisb0psa03p7di7jx8vrkg5n"; depends=[svMisc]; }; - svMisc = derive2 { name="svMisc"; version="1.0-2"; sha256="1a5wlz1csq6y2bqiznz14dlx5jc8z3x882yi2v82hinn647vn4m8"; depends=[]; }; + svMisc = derive2 { name="svMisc"; version="1.1.0"; sha256="01r2a73wx2sh1njky961fxabx5wgddqqjqba6vjg0f3h8r3abmn2"; depends=[]; }; svSocket = derive2 { name="svSocket"; version="0.9-57"; sha256="0id93b500iybza6sbn60ybm91mkh5cjpvhypqs4f3dv13m6blb9j"; depends=[svMisc]; }; svSweave = derive2 { name="svSweave"; version="0.9-8"; sha256="0zkng8lwdpjdbic9f6jnk2ndxbch2kjyz71ds1bksvd3kmk03lks"; depends=[knitr]; }; - svTools = derive2 { name="svTools"; version="0.9-4"; sha256="0szr5dcxjsh5p1nkszvmj0vmi9x70d656hfvhmqf0wyjwv63vp90"; depends=[codetools svMisc]; }; + svTools = derive2 { name="svTools"; version="0.9-5"; sha256="040wr8cr2p35x6pr515bprmsw8ysajx4df5f2njz3ily61xf9szi"; depends=[codetools svMisc]; }; svUnit = derive2 { name="svUnit"; version="0.7-12"; sha256="16iiryj3v34zbnk1x05g30paza7al1frqx52fkw8ka61icizsrf5"; depends=[]; }; - svWidgets = derive2 { name="svWidgets"; version="0.9-44"; sha256="18k06wldcg6xpyf8nz9rdbig5nhvghn7zgf1316413kq3v90vz7b"; depends=[svMisc]; }; + svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; svapls = derive2 { name="svapls"; version="1.4"; sha256="12gk8wrgp556phdv89jqza22zmsnachsydr5vlz38s664d2lplbg"; depends=[class pls]; }; - svars = derive2 { name="svars"; version="1.1.2"; sha256="1d3dk4vn5l46xw5nh7k63v35phzvy9ixmbz0d2znl2nm05ih7gyy"; depends=[clue copula DEoptim expm ggplot2 pbapply reshape2 steadyICA tsDyn vars]; }; + svars = derive2 { name="svars"; version="1.2.0"; sha256="06kg9z5clsgg65gjrcb456ppdwk8cja2cmzfwlwmnz5yf3m6lk8k"; depends=[clue copula DEoptim expm ggplot2 pbapply reshape2 steadyICA tsDyn vars zoo]; }; svcm = derive2 { name="svcm"; version="0.1.2"; sha256="1lkik65md8xdxzkmi990dvmbkc6zwkyxv8maypv2vbi2x534jkhl"; depends=[Matrix]; }; svd = derive2 { name="svd"; version="0.4.1"; sha256="00plnwrjnp3majssr3qbz2zp25z9cfivgpggyfvy4lnc4av5qn3g"; depends=[]; }; svdvis = derive2 { name="svdvis"; version="0.1"; sha256="1z3z86izl2gpxllpx56vn6kkdg9cjjikfd90hdjnfi4bmmpx50dn"; depends=[GGally ggplot2 gridExtra RColorBrewer reshape2 scales]; }; @@ -11671,30 +11859,31 @@ in with self; { svglite = derive2 { name="svglite"; version="1.2.1"; sha256="1bws3lc4hlhln11zd7lalhiyc43yk6c6vrzy41fkxk1dkjazfx51"; depends=[BH gdtools Rcpp]; }; svmadmm = derive2 { name="svmadmm"; version="0.3"; sha256="15ccda1r9cc6v30j37i052rdwxgw0wg37hwyn2vp8c7bkr0ybgkm"; depends=[kernlab]; }; svmpath = derive2 { name="svmpath"; version="0.955"; sha256="02j5xs4gg8k16imnwk6aram168cv1dqdrky3bszyc98l7xd0nlrj"; depends=[]; }; - svrpath = derive2 { name="svrpath"; version="0.1.1"; sha256="0j38m34ff5a8lqfsss8444fflprai3sgzi9kyrmingp07rx82ss5"; depends=[quadprog svmpath]; }; + svmplus = derive2 { name="svmplus"; version="1.0.1"; sha256="08cfywrbaxyacqd3l75lysb23ahqbs80959iqkjbb125aafmhvni"; depends=[MASS Matrix quadprog]; }; + svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="1.1.0"; sha256="0575msaxg04ck76mbr815m29y895qvg8b9qg4y0ggv6b1lvwp5p6"; depends=[gtools]; }; svyPVpack = derive2 { name="svyPVpack"; version="0.1-1"; sha256="15k5ziy2ng853jxl66wjr27lzc90l6i5qr08q8xgcs359vn02pmp"; depends=[survey]; }; swCRTdesign = derive2 { name="swCRTdesign"; version="2.2"; sha256="0kggniy5p900cj074swh7g47zf8bhwjmqph9b5frw86nycxwyn3v"; depends=[]; }; swa = derive2 { name="swa"; version="0.8.1"; sha256="1zy1a6c17vmdkmkwp8vv3niww2zs1m0hylsa0b2cz68vfhnmpim4"; depends=[ggplot2 reshape ROCR]; }; swagger = derive2 { name="swagger"; version="3.9.2"; sha256="13scbzv65qzxh7kfwlb2k47zgvv7fz085g5lki6zr5w6a33g45q9"; depends=[]; }; - swamp = derive2 { name="swamp"; version="1.3.1"; sha256="1l4rk79hbggn31y5skslqsz9bv7lmya4q5ligki3x1677345hyhv"; depends=[amap gplots impute MASS]; }; + swamp = derive2 { name="swamp"; version="1.4.1"; sha256="01w44d7rqh6q9wpapd3g7rzllhbm2brwilmna9vk2dwqx57jyim6"; depends=[amap gplots impute MASS]; }; swapClass = derive2 { name="swapClass"; version="1.0.1"; sha256="0wg6km261xdywakxi64dw4wwprbrkw217q4c6622z0mgm9sjgpym"; depends=[inline]; }; swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; sweep = derive2 { name="sweep"; version="0.2.1"; sha256="0v6166p1h14klf1avqvry8jj3as498qnydksy0da8q1bp1sy007f"; depends=[broom devtools dplyr forecast lazyeval lubridate tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.1"; sha256="014zbp6a66gv7b0f2gmzvifllz266zrc14ihawksvyp1mcxz2ipg"; depends=[lubridate stringr]; }; swfscMisc = derive2 { name="swfscMisc"; version="1.2"; sha256="08p2crsx8zi6qprs14mhdyq9x5sjlp3a46c1zzvp6741an4fy640"; depends=[ggplot2 mapdata maps reshape2 spatstat]; }; + swgee = derive2 { name="swgee"; version="1.2"; sha256="1blfxhvcpfbc0k25xlkw8bxqdmgz3c9ksd9ww2p8k0dy5jd2z64r"; depends=[gee geepack mvtnorm]; }; swirl = derive2 { name="swirl"; version="2.4.3"; sha256="1l7gwisk3sjslh6zh4cq3vxf5y84af2fr078cp4i86rw1w2j9d44"; depends=[digest httr RCurl stringr testthat yaml]; }; swirlify = derive2 { name="swirlify"; version="0.5.2"; sha256="07r6rdj079ryafdgs0p8jhnk4h7iqm7agh9wjhvm12abbwjr9g1x"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; + swissMrP = derive2 { name="swissMrP"; version="0.62"; sha256="1vy6h6c4v49zlsli77ilj4df8cfh67rqmki71v6j1aqw6kf3b649"; depends=[arm blme lme4 maptools sp]; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; switchr = derive2 { name="switchr"; version="0.12.7"; sha256="1ymvghjvbrbsgn49mp8f9n4kv81626pa4pv05hrx813ly8h30mmq"; depends=[RCurl RJSONIO]; }; swmmr = derive2 { name="swmmr"; version="0.8.1"; sha256="0zl00864x9q6a2aqdbqs3b5kw6z50wgr46c62kxk9xkns8317sa7"; depends=[dplyr purrr Rcpp readr tibble tidyr xts zoo]; }; - sybil = derive2 { name="sybil"; version="2.0.4"; sha256="0iyqr9iyb4bydmzjzrc721nzf5q36p2i3zciai9rzjlwx2mdw930"; depends=[lattice Matrix]; }; + sybil = derive2 { name="sybil"; version="2.1.1"; sha256="1hgxlwpb5libvv126vh01ngxqs8hlvll8xjgxw5xxhfbgsadfp1m"; depends=[lattice Matrix]; }; sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.1"; sha256="1zyhvlzkcwnq3sh6gvi0v1crq94mr16bc5jnh0g9c8rbdl4v8r4x"; depends=[sybil]; }; - sybilEFBA = derive2 { name="sybilEFBA"; version="1.0.2"; sha256="07c32xwql7sr217j8ixqd2pj43hhyr99vjdh7c106lsmqd1pifa4"; depends=[Matrix sybil]; }; sybilccFBA = derive2 { name="sybilccFBA"; version="2.0.0"; sha256="0x0is1a56jyahaba6dk9inj5v248m8n46f70ynqyqp1xpiax1fkr"; depends=[Matrix sybil]; }; sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.0"; sha256="0p3w7ipyrqrh7nf52h8qmr4fikyinm8an7npmcb7kwjd59rcy554"; depends=[MASS Matrix sybil]; }; sylcount = derive2 { name="sylcount"; version="0.1-0"; sha256="1dxbqbjyvkg7cx234icby9fjdjz1z4l4crqd7kv8m05fv69pg224"; depends=[]; }; - syllable = derive2 { name="syllable"; version="0.1.3"; sha256="1ymnczwx58h720hsm0s9zq3ddwg6gn6bgg0m8zw24i0nlivx0yjg"; depends=[data_table stringi textclean textshape]; }; sylly = derive2 { name="sylly"; version="0.1-4"; sha256="14lw5sxrdvidk0465a7x0jz74cvqjbqv0wlqdy78qzbq4ilcmcaa"; depends=[]; }; sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; symDMatrix = derive2 { name="symDMatrix"; version="1.0.0"; sha256="0xss7f7hkrf2afchccfavymylfybnp9nxawqxd2vdjni95kbd595"; depends=[]; }; @@ -11704,11 +11893,11 @@ in with self; { synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; }; synbreed = derive2 { name="synbreed"; version="0.12-9"; sha256="0h85z9bhzgsr783qx3zjqyi461a0q52wbqifwm3gc1kapl5irxhd"; depends=[abind BGLR doBy doParallel foreach igraph lattice LDheatmap MASS qtl regress]; }; synbreedData = derive2 { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n8726qv0jlizmkvnrqwjj1q4xaxvfmj9611rm47vckx"; depends=[]; }; - synchronicity = derive2 { name="synchronicity"; version="1.3.2"; sha256="1idrjzl7nkamf1ip55s6qcf64s63xs9j8z9jv3r89p6r5lw7k5mv"; depends=[BH bigmemory_sri Rcpp uuid]; }; - synchrony = derive2 { name="synchrony"; version="0.2.3"; sha256="0fi9a3j8dfslf1nqx8d53fi635y3aq8isxw0dbjbpgk7rc71nzby"; depends=[]; }; - synlik = derive2 { name="synlik"; version="0.1.1"; sha256="0g4n78amydihsq4jg2i9barjm9g40zczasb31fj10yn6wir1dhv7"; depends=[Matrix Rcpp RcppArmadillo]; }; - synthACS = derive2 { name="synthACS"; version="1.0.1"; sha256="0jbhiadgc8f6h7ga685cm5i8y59lf76r8sgd629xfjj4jxn8ckdm"; depends=[acs data_table Rcpp]; }; - synthpop = derive2 { name="synthpop"; version="1.4-3"; sha256="1smibiid3hav7w9yky0n6ci160h69v16kkilmm00gady6w7j8drh"; depends=[classInt foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; }; + synchronicity = derive2 { name="synchronicity"; version="1.3.4"; sha256="1km5hx82gy71m5nc6pkcksv0dn32fylhg2axpdsnarrxva14mgdg"; depends=[BH bigmemory_sri Rcpp uuid]; }; + synchrony = derive2 { name="synchrony"; version="0.3.7"; sha256="0lnin4aphy1lq20bn7nsdj0ymy2xdwjzdj2f89xq0qwkc7w7b5jb"; depends=[]; }; + synlik = derive2 { name="synlik"; version="0.1.2"; sha256="1pscfqg5x7wpq3vp1i7fy29dwa7cw5g3kzxinanwrwbcznv9nyms"; depends=[Matrix Rcpp RcppArmadillo]; }; + synthACS = derive2 { name="synthACS"; version="1.4.2"; sha256="069cqmp9whal7z490jh6my8fqmmc4d2mm693xi4lsci2afc5plzc"; depends=[acs data_table Rcpp]; }; + synthpop = derive2 { name="synthpop"; version="1.4-4"; sha256="1q3vmsagdaha97182cf3ak51rjx018h8c72zv9v6slf7h71a0d53"; depends=[classInt foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; }; sys = derive2 { name="sys"; version="1.5"; sha256="0yskm5mzps4435yvld9nfp6i5lqdy5ckpdwydvvbyjznz5yv01x2"; depends=[]; }; sysfonts = derive2 { name="sysfonts"; version="0.7.2"; sha256="1jl66pyw9khi117523zanjjzdpnpgqdqx190w829xc4ljxzi8n55"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; @@ -11720,96 +11909,95 @@ in with self; { tab = derive2 { name="tab"; version="3.1.2"; sha256="1vc5swfy9p3bsv5bqqgk4w81apzk6d0m1xz0cbhii7rpn7x6zh1h"; depends=[gee survey survival xtable]; }; taber = derive2 { name="taber"; version="0.1.0"; sha256="07a18kn65b4cxxf1z568n7adp6y3qx96nrff3a3714x241sd5p6i"; depends=[dplyr magrittr]; }; tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.2"; sha256="1q7ap1dmymf3aj5g860794jfn9zrn3qiwwcdzl95lsbpkhgyspmz"; depends=[openxlsx]; }; + table1 = derive2 { name="table1"; version="1.0"; sha256="06cidli3k8cxzvnj1n6vysamkd3qsim2i6ly9fl7rwiyj4g64rw8"; depends=[Formula]; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; tableHTML = derive2 { name="tableHTML"; version="1.1.0"; sha256="0j2dk11h0dvibppyxjix4pxr6i9ji9ipzaizsr1fadrpk5xzawd5"; depends=[htmltools magrittr shiny]; }; - tableMatrix = derive2 { name="tableMatrix"; version="0.8"; sha256="00l03blrrkwdrihqnwz8afx6s3d7a19laj44584546yd3prqx5dy"; depends=[data_table]; }; - tableone = derive2 { name="tableone"; version="0.9.2"; sha256="12lyyhfirj768fws1j93qhc6n8b89hrlafixiilsg7fy14w89620"; depends=[e1071 gmodels labelled lmerTest MASS nlme survey zoo]; }; + tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; + tableone = derive2 { name="tableone"; version="0.9.3"; sha256="0wcp4ip9ww56sffnd9v0p73a50aakdnx0gs98qniy6g3z86s328j"; depends=[e1071 gmodels labelled lmerTest MASS nlme survey zoo]; }; tableplot = derive2 { name="tableplot"; version="0.3-5"; sha256="1jkkl2jw7lwm5zkx2yaiwnq1s3li81vidjkyl393g1aqm9jf129l"; depends=[]; }; - tables = derive2 { name="tables"; version="0.8.3"; sha256="1n0kqsvwx2vg7nwyz7hi708xpf2jc9bz3y84aflnzcmbspj1wvf3"; depends=[Hmisc]; }; + tables = derive2 { name="tables"; version="0.8.4"; sha256="1d4w3gjl5v8jnmdizg0rmnyxa9z3pxi3k226kc7nh7jfm8m9raif"; depends=[Hmisc knitr]; }; tabplot = derive2 { name="tabplot"; version="1.3-1"; sha256="0yz3npn36q93gr0k9a4x5swap5fwxfc22b131kif3dfxkgklna06"; depends=[bit ff ffbase]; }; tabplotd3 = derive2 { name="tabplotd3"; version="0.3.3"; sha256="0mbj45vb17wlnndpkhvq7xaawsb814x7zxa4rqbfgidvbm1p3abv"; depends=[brew httpuv RJSONIO Rook tabplot]; }; - tabr = derive2 { name="tabr"; version="0.1.2"; sha256="1c9r6lx12xadv0c0068zxgx29nnf2hdbbrybm6bs27scizaxzhd2"; depends=[dplyr magrittr purrr tibble]; }; + tabr = derive2 { name="tabr"; version="0.2.0"; sha256="1wmb1ywlsx2fqc9rg6hfi1anjiq4g552y65b0nflbv5yxsw96wsk"; depends=[dplyr magrittr purrr]; }; tabuSearch = derive2 { name="tabuSearch"; version="1.1.1"; sha256="0396a8hla508na1hmyyhfbl8w10dbg810cln2xyhhvxi7rr223dj"; depends=[]; }; - tabularaster = derive2 { name="tabularaster"; version="0.4.0"; sha256="1hgbynjp19xwpin31j0647ldbzxam2kmkqnvj6v8kd4svps0kr3g"; depends=[dplyr raster sp spbabel spex tibble viridis]; }; - tactile = derive2 { name="tactile"; version="0.1.0"; sha256="0ygray05jlxrg7mxg412s04jrxjyskxlrl0xgxir8s6mzjg79iqy"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; + tabularaster = derive2 { name="tabularaster"; version="0.5.0"; sha256="0cqax6hq0pbxmqls3cs21cc86662wdzjyx4lkxw42dbw4v13f728"; depends=[dplyr fasterize gibble magrittr raster rlang sp spatstat spbabel spex tibble viridis]; }; + tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; }; + tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; }; + tactile = derive2 { name="tactile"; version="0.2.0"; sha256="0jjfbsadxbf9s6vzi82rw5qa6hdc8iz4jci9xpbzwrjkb90dzd08"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; tadaatoolbox = derive2 { name="tadaatoolbox"; version="0.16.0"; sha256="0i69zyiqq8mc5wfc9r43dpcjhwmq4iwj605n4a6h4hma37jjnc2g"; depends=[broom car DescTools ggplot2 magrittr nortest pixiedust pwr viridis]; }; tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; tailDepFun = derive2 { name="tailDepFun"; version="1.0.0"; sha256="1z2jrzly1adiwi8y0pndyfggpr0li6sjv9rkrc5mi47s0qjvr5qj"; depends=[copula cubature mvtnorm SpatialExtremes]; }; tailloss = derive2 { name="tailloss"; version="1.0"; sha256="0lmjgjs6d94b70i10vx66fyvlxm5swwqbcjsnqa3lmldzz6m4jc1"; depends=[MASS]; }; - tailr = derive2 { name="tailr"; version="0.1.1"; sha256="07irl0fzg9skpv9kl211ar3yf68lcrpd2rcplkzbm242yb772z1v"; depends=[glue rlang]; }; - tangram = derive2 { name="tangram"; version="0.3.2"; sha256="1dyfyl608k6a7vx9w0s2r6jr0y430qvkqkrrv24wav7snza4d5q2"; depends=[base64enc digest htmltools magrittr R6 stringi stringr]; }; + tailr = derive2 { name="tailr"; version="0.1.2"; sha256="1z47akvm2y05ih8q5ci03jm29xzp4m52shvbm4d9h2bipnq5crys"; depends=[glue rlang]; }; + tangram = derive2 { name="tangram"; version="0.4"; sha256="1yj5vwc8jkiic4zjag9k7w3j6dibqw5zsi78q6gssshsi9z0zbgy"; depends=[base64enc digest htmltools magrittr R6 stringi stringr]; }; tatoo = derive2 { name="tatoo"; version="1.1.0"; sha256="1dsycdp3vln1m1w3nhhrr60x8raw6gbihjpav0d4ad8qla2fq8nh"; depends=[assertthat colt crayon data_table magrittr openxlsx purrr rlang stringi withr]; }; tau = derive2 { name="tau"; version="0.0-20"; sha256="1inpqc2cz1vvjkmp8h3jpjvnvj0y5cwbbj92jlq0322w5w45vip9"; depends=[]; }; tauturri = derive2 { name="tauturri"; version="0.1.1"; sha256="0v0p1avrx9vgnrli4zp6figm3s9265k9yny0acblbjlmz3z8smai"; depends=[httr magrittr plyr purrr tibble]; }; - tawny = derive2 { name="tawny"; version="2.1.6"; sha256="0s6p0nnz1rpcnn2yfj1vvl54g57d8rv5s4y09azwz1z5ls7vnnlv"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; - tawny_types = derive2 { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdczjn5ymsp2fqq0ijnlniyf3bc08ibd8yd1jcdyjnj"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; }; - taxa = derive2 { name="taxa"; version="0.2.0"; sha256="16jif3s5xf4cawwkhpmjrwb0c4ycmwicrshd5m0arlkcfmq85623"; depends=[dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr tibble]; }; + tawny = derive2 { name="tawny"; version="2.1.7"; sha256="1b2v0cgkmhzxy36dcdn6hnbqk6l5ac5c3myvwryf7wlp19xi786d"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; + tawny_types = derive2 { name="tawny.types"; version="1.1.5"; sha256="1vg0hv91dif6cfqfzrf7m1qbk57fp8v97fp88whwmvs83yd521hq"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; }; + taxa = derive2 { name="taxa"; version="0.2.1"; sha256="0jh3isjlh6bx9mdhavg1c43aayq1zl5jqx3x4690lwgvphnzl1dn"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; }; taxize = derive2 { name="taxize"; version="0.9.3"; sha256="05llhgv6a440va80fs45r8q6865q45gi4z28b1ldcln0dmx77r7c"; depends=[ape bold crul data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble wikitaxa worrms xml2 zoo]; }; taxizedb = derive2 { name="taxizedb"; version="0.1.4"; sha256="15gj9i18ysd83v9fidrrvw938dah04i10ahi3wh5dgjs5fd5ch2s"; depends=[curl DBI dbplyr dplyr hoardr magrittr RMySQL RPostgreSQL RSQLite]; }; - taxlist = derive2 { name="taxlist"; version="0.1.3"; sha256="0lsphap7brl67y458x29843wkxvvf2ppjn1crz4hby7wmn1psarx"; depends=[foreign taxize vegdata]; }; + taxlist = derive2 { name="taxlist"; version="0.1.5"; sha256="17b7sdjjzragi8k08304idic0p8cj095h4p9vlpfidn8k6csrkv8"; depends=[foreign stringdist taxize vegdata]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.2.2"; sha256="0drzsbr23kr3da6bawjrz8rl976mai0vcz19fr5aypsliqz32b41"; depends=[data_table R_utils RSQLite]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbdiag = derive2 { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; tbl2xts = derive2 { name="tbl2xts"; version="0.1.2"; sha256="1zz310253s6gz0hzzldil5r03mm7ngvvnba7hxm8fm9dhfmvkbj6"; depends=[dplyr lazyeval PerformanceAnalytics xts zoo]; }; tcR = derive2 { name="tcR"; version="2.2.1.11"; sha256="1wyxjwyba08m80g2c40sdg3d5brs3qmq8azb6vzwh2wmgqlb5400"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; - tccox = derive2 { name="tccox"; version="0.1.0"; sha256="0b7f8kfsh97viplkjiiy8xm5b94ijnb0m748wqrnxgrvy8ikiy5k"; depends=[survival]; }; tcgsaseq = derive2 { name="tcgsaseq"; version="1.6.6"; sha256="0sk8fydhfx1c3mrir3qx8bqcif220l6ggzmlw9yw8faha210ak2y"; depends=[CompQuadForm ggplot2 GSA KernSmooth]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; - tclust = derive2 { name="tclust"; version="1.3-1"; sha256="1li62wynv81kb17fx7nk63a26qlb78l8fdf63in8yzcl7fkpji7y"; depends=[cluster mclust mvtnorm sn]; }; - tcpl = derive2 { name="tcpl"; version="1.2.2"; sha256="1f32qq5816qkyx3n16vgf13g2piv2pqn2nki3c91vg51bwfap7z1"; depends=[data_table DBI numDeriv RColorBrewer RMySQL RSQLite]; }; + tclust = derive2 { name="tclust"; version="1.4-1"; sha256="17md6l9v9dl9b72l84df01b52h2xiynbcjm437mv9mzcr09fc2sb"; depends=[]; }; + tcpl = derive2 { name="tcpl"; version="1.4.3"; sha256="0b588in2xmdvybzfbbr0ik9mf0ls6k31nbrdpl7ijvxg2xfxfr1w"; depends=[data_table DBI numDeriv RColorBrewer RMySQL RSQLite]; }; tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; tdr = derive2 { name="tdr"; version="0.13"; sha256="0i0hnb3fc4d1mbbxcpzmyfh1w2rahfjabg5iyxym3yjd6377al15"; depends=[ggplot2 lattice RColorBrewer]; }; - tdthap = derive2 { name="tdthap"; version="1.1-7"; sha256="0lqcw4bzjd995pwn2yrmzay82gnkxnmxxsqplpbn5gg8p6sf5qqk"; depends=[]; }; + tdthap = derive2 { name="tdthap"; version="1.1-9"; sha256="0y01x0hcf0rw06cpn4pk17b0shf4v2c9was7vfs0zhsbq8qcwx7r"; depends=[]; }; tea = derive2 { name="tea"; version="1.0"; sha256="03wxhbgx17hl9bbzbfjmfa30q4fqszhs5y9imbp768fmzwbppn24"; depends=[eva]; }; - teachingApps = derive2 { name="teachingApps"; version="1.0.2"; sha256="0rdgylcjwgbsasvd2mvi4qp74c3n4vg8yr59a82c2sidfkllci36"; depends=[actuar d3heatmap d3Network data_table devtools diagram DiagrammeR dplyr DT dygraphs ggplot2 knitr leaflet magrittr markdown metricsgraphics miniUI needs networkD3 plotly radarchart Rcpp rprojroot scales shiny shinyAce shinydashboard shinythemes threejs tidyr visNetwork yaml]; }; + teachingApps = derive2 { name="teachingApps"; version="1.0.4"; sha256="0wi25wdpkz7kh8r1s42wa9kiky8ilmcg8kgw0j1caygwg0bml2fa"; depends=[actuar BH d3heatmap data_table devtools diagram DiagrammeR dplyr DT dygraphs ggplot2 knitr leaflet magrittr markdown metricsgraphics miniUI networkD3 pacman plotly radarchart Rcpp RcppEigen RcppNumerical rprojroot scales shiny shinyAce shinydashboard shinythemes threejs tidyr visNetwork yaml]; }; teamcolors = derive2 { name="teamcolors"; version="0.0.1"; sha256="07mqsbhrsy23qc4j1w1wji36cbh6dijkp6p7g3598nlzhw7ln3aj"; depends=[]; }; teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; teigen = derive2 { name="teigen"; version="2.2.2"; sha256="1k5k3lj6av5pyx130w1j7avd0jdmm12ryc71mi5mq49sp95ndl4v"; depends=[]; }; telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; telegram_bot = derive2 { name="telegram.bot"; version="1.0.0"; sha256="10i126wa5dbpzxvr8f9zysfwg53051sk9cjdpdrjva1p3yvyn143"; depends=[httr R6 telegram]; }; - tempR = derive2 { name="tempR"; version="0.9.9.12"; sha256="1ipr9yb26f1mmyivbapbb83n1fxa4gpxqgb99p5nx6mzw71vyp4j"; depends=[]; }; + tempR = derive2 { name="tempR"; version="0.9.9.15"; sha256="00xxrwzbqcsvb50xcrr4aii4fjcfa8bc25jn0zvg4dxmww8w4s1r"; depends=[]; }; tempcyclesdata = derive2 { name="tempcyclesdata"; version="1.0.1"; sha256="0hciachv59kjpjs119r4z24jskzgnassi1yjg3cgl2r0hyglxxc3"; depends=[]; }; tempdisagg = derive2 { name="tempdisagg"; version="0.25.0"; sha256="0zi11jqb3i5kd2z1bbkz8y7g16kmkcn3xpkwj2brv0s86wxwsny7"; depends=[]; }; temperatureresponse = derive2 { name="temperatureresponse"; version="0.1"; sha256="0q2x09cyy4zacbgmnwd43h1rwv2g3f2rk9cbg2phsvgxqx9vfm24"; depends=[AICcmodavg broom dplyr minpack_lm nlme numDeriv rootSolve tidyr]; }; - templates = derive2 { name="templates"; version="0.2.0"; sha256="1lil7z975fk83m9pgacn0ikii4kslpp0pvpc8g7ra9yqj7qpyv3h"; depends=[dat magrittr modules stringr]; }; + templates = derive2 { name="templates"; version="0.3.0"; sha256="0xnzj3cvhw1r7zfqaijbfdyclka61jwixcdh05a5z9qwgv0076sh"; depends=[dat magrittr stringr]; }; tensor = derive2 { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; tensorA = derive2 { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; }; - tensorBF = derive2 { name="tensorBF"; version="1.0.1"; sha256="1rnsff1ypwhn5z0xsxyk2z7jl6igscma1a0w613i81qf37iy81ba"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.4"; sha256="0wh14qy7fa7klb7yy272d16cvgfgnrf25wba3bqbpral9pv5nkmv"; depends=[ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; - tensorflow = derive2 { name="tensorflow"; version="1.5"; sha256="00g5fdr0ij2ximmqgd7a1hz66462lkjf4q6pn0knkhxcgp7jv8nn"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; }; + tensorflow = derive2 { name="tensorflow"; version="1.8"; sha256="1ixli2m7lbkp5pv7a8waxvhi04l41dcrrplzgdyzqi3ifaarr2sk"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.0"; sha256="00zqklz3hqjv20giwqnd1d62x5hdm620hfdkn1x75i87dv92qn8m"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensr = derive2 { name="tensr"; version="1.0.0"; sha256="05gclhljflkz98hgiq5bgbqjz8icxbdq6b84bn2995cx7v0x85ds"; depends=[]; }; tergm = derive2 { name="tergm"; version="3.4.1"; sha256="10sanqbnqdyqafjjcwm99zfnpgrv18z4y2rgaq5wqq7nni184hfm"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; - termstrc = derive2 { name="termstrc"; version="1.3.7"; sha256="12bycwhjrhkadafcckc30jr0md0ssj21n4v75yjhy21yvqjx1d7a"; depends=[lmtest Rcpp rgl sandwich urca zoo]; }; - ternvis = derive2 { name="ternvis"; version="1.1"; sha256="16q1a1ns7q0d46js2m1hr6zm8msg3ncgp8w7yrwch11xq0759sb4"; depends=[dichromat mapdata maps maptools quadprog]; }; - tesseract = derive2 { name="tesseract"; version="2.0"; sha256="0dps8nji7rx5vfa9g2kmdh3vgm9f61dbainl4arrqngcr5fglpnf"; depends=[curl digest pdftools rappdirs Rcpp tibble]; }; + tesseract = derive2 { name="tesseract"; version="2.1"; sha256="11v4z79sdrms5in5qvg5c6bvf2lynibwzpi7ficf7w240nq23d15"; depends=[curl digest pdftools rappdirs Rcpp tibble]; }; testassay = derive2 { name="testassay"; version="0.1.0"; sha256="06gks3k04m45kn946i525261v33ymwxpvgdy84kc7sp01xxx4rfv"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; - testit = derive2 { name="testit"; version="0.7"; sha256="07qsnhghdgyxdknzq7ngpkf3qw9939m3lvk9dv9nk2zypy4jhcq3"; depends=[]; }; + testit = derive2 { name="testit"; version="0.8"; sha256="1xwpimphcv23ps824s6s77y9w8xww0imm22qmgs61bifjsfc3a88"; depends=[]; }; testthat = derive2 { name="testthat"; version="2.0.0"; sha256="155l53kb69jga5d8c5nvdwqlvlgfmk4vzyyl4d0108j53jnlgh1v"; depends=[cli crayon digest magrittr praise R6 rlang withr]; }; testthis = derive2 { name="testthis"; version="1.0.3"; sha256="1q42nhp4nsazn31lxymb3zfj928ygbiv6jy7f0j4m3p02w2hqz5n"; depends=[assertthat devtools magrittr rprojroot stringi testthat usethis]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; - texPreview = derive2 { name="texPreview"; version="1.1.0"; sha256="085aa9qgnmf3mqan2pff0gcdrz7kxd84r12lz780r1mr05ckk8zk"; depends=[magick rstudioapi svgPanZoom xml2]; }; + texPreview = derive2 { name="texPreview"; version="1.1.4"; sha256="1xix13vh3haganyb67rrmrsy2nsk053wq83y9ky99wk5gmxpjmxf"; depends=[base64enc htmltools magick rstudioapi svgPanZoom xml2]; }; texmex = derive2 { name="texmex"; version="2.4"; sha256="0s3x681f1qnbgmzi5iwqpmkfzpx9gsccd3q1vz1dppzq8fbid3c2"; depends=[ggplot2 mvtnorm]; }; texreg = derive2 { name="texreg"; version="1.36.23"; sha256="0yxaqimd7cyfrfpia6fnqm15lgs0bf5zyjzmnfm1v4qmf8kj8x6v"; depends=[]; }; text2vec = derive2 { name="text2vec"; version="0.5.1"; sha256="0vcp50mgpgxbf534vd8l56m8006i3sh8a4v9nrf9vxkq2pv7xygc"; depends=[data_table digest foreach futile_logger irlba Matrix mlapi R6 Rcpp RcppParallel sparsepp stringi]; }; - textTinyR = derive2 { name="textTinyR"; version="1.1.0"; sha256="129ha0187vw4q5lw3xgch2k4fh9kfjrvvx2bb8bm3rd2skdhajj1"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; + textTinyR = derive2 { name="textTinyR"; version="1.1.1"; sha256="0i35mfvrqz524089zysd1dyhfk6ndr1azxps01vls9rvgyw9452i"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textcat = derive2 { name="textcat"; version="1.0-5"; sha256="039bzyz4jvh1hl2a2pfp328kr2mpb1a07j79yqf5cbqk3d5a197b"; depends=[slam tau]; }; - textclean = derive2 { name="textclean"; version="0.7.2"; sha256="13g8k7i7j33g4bzqps638k0j1gyms740wyz7d0205cqm70kzz8m3"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; + textclean = derive2 { name="textclean"; version="0.9.2"; sha256="1xf5krbc8nr0yk63mcdlzbn3r58m4l4wgxhp54bahvn0ff8cwsjb"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; texteffect = derive2 { name="texteffect"; version="0.1"; sha256="0fwcbz7bpynvcivac16z77j8d398bf7vl4l8sppi9yvg72l0k94w"; depends=[boot ggplot2 MASS]; }; textfeatures = derive2 { name="textfeatures"; version="0.1.1"; sha256="0pcs3nax21npb5blbwrmzl7q85ya8n7vgjn83z2abjr80gj3f5lj"; depends=[dplyr rlang tibble]; }; textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; textile = derive2 { name="textile"; version="0.1.2"; sha256="067zli6sl7bp9843spgx47hmw55aq61yinqw1lqifmrpk7b0ywk5"; depends=[]; }; textir = derive2 { name="textir"; version="2.0-5"; sha256="0ban5qiinlxizqpcgafv4b5gwxlil6jdfarjd6l1m48awxh3mlnb"; depends=[distrom gamlr Matrix]; }; - textmineR = derive2 { name="textmineR"; version="2.1.1"; sha256="15cs2x8cn1766inqck3bdfig0wngwny689bwmjrs5w66618007ji"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm topicmodels]; }; + textmineR = derive2 { name="textmineR"; version="2.1.2"; sha256="1lhk4ix8h138vrn2l1ivcwgv2d9i7xgccn7c6h6gxxc5dpzwdsyk"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm topicmodels]; }; textmining = derive2 { name="textmining"; version="0.0.1"; sha256="16wiykhrjs4djwa7q2wm4g8b3mrhh6hq9d9876w1j7c2s6zx69gd"; depends=[caret dplyr koRpus mallet networkD3 NLP rJava slam SnowballC stylo tm topicmodels wordcloud]; }; textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; textrank = derive2 { name="textrank"; version="0.2.0"; sha256="0s2mnid3dha3nyyc9abhb36vlij4bg0024i9ay4pvvy4l1x947gr"; depends=[data_table digest igraph]; }; textreadr = derive2 { name="textreadr"; version="0.7.0"; sha256="081lqqclx2dlrv341178dagd5zajndf27lbrkrv78668cdfk58xr"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; textreg = derive2 { name="textreg"; version="0.1.4"; sha256="0k7hpvvhacz29d3mvnygg6rqmh9f3ghkcp7kjmvv9jnr2ipw2j21"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; - textshape = derive2 { name="textshape"; version="1.5.0"; sha256="0hvp3mz7j2qkw38jg9cj92ikhyic1c9w8jk07z3vh3f5cm1klvbm"; depends=[data_table slam stringi]; }; + textshape = derive2 { name="textshape"; version="1.6.0"; sha256="1pl85wjq5rl25gdlh4cp0l14hn76rrmpl7l1fn7kq9lwj9yfpcs8"; depends=[data_table slam stringi]; }; textstem = derive2 { name="textstem"; version="0.1.4"; sha256="1pbhi5ia3w16vsix2x3if51zd2v9bcv0j4lj9hfikgq1yz9zxmw2"; depends=[dplyr hunspell koRpus koRpus_lang_en lexicon quanteda SnowballC stringi textclean textshape]; }; textutils = derive2 { name="textutils"; version="0.1-6"; sha256="0xvsd6pfg4kv40l14xcvmirqiq8rmky4s8v8diagzri3a7i45nqn"; depends=[]; }; tfdatasets = derive2 { name="tfdatasets"; version="1.5"; sha256="1ik6rzfnjmm54m7s2rvp1bq5jk0k2vl631bz3db3dk639jndiz6a"; depends=[magrittr reticulate rlang tensorflow tidyselect]; }; @@ -11829,7 +12017,7 @@ in with self; { theseus = derive2 { name="theseus"; version="0.1.0"; sha256="1f6vl0m8fcchafn78vrfw610d0sp9rf8kd3q5n7b0zd2yby10dq0"; depends=[dplyr ggplot2 gridExtra magrittr phyloseq ShortRead splancs tidyr tidyverse vegan viridis]; }; thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; - thinkr = derive2 { name="thinkr"; version="0.11"; sha256="1rr90q91nn406n2sbn3k9q5y1mjcb4i4ixsp05mh38r9qjkbirhk"; depends=[assertthat devtools dplyr ggplot2 lazyeval lubridate magrittr ReporteRs stringi stringr tidyr XLConnect]; }; + thinkr = derive2 { name="thinkr"; version="0.13"; sha256="1j43mjznriq8d5ki50rb41vgmzj2gq8sahvhj11742ggxd0bzvdb"; depends=[assertthat devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr]; }; threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; }; threejs = derive2 { name="threejs"; version="0.3.1"; sha256="1s3rdlzy7man6177ycayg6xsh6k8y1r9rdj9yzn3b93j2rs0nxbi"; depends=[base64enc crosstalk htmlwidgets igraph]; }; threewords = derive2 { name="threewords"; version="0.1.0"; sha256="083y5i4qyl1wj017wy5ywl2yx9wvrpjl9g9k9clvnrbwzbycx2cg"; depends=[httr]; }; @@ -11843,50 +12031,51 @@ in with self; { tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; tidyLPA = derive2 { name="tidyLPA"; version="0.1.3"; sha256="1yk9abn21ycfdr1h43shjaymga5j9z862mp1zbwj2wbxxv6m5pp7"; depends=[dplyr forcats ggplot2 magrittr mclust purrr readr rlang stringr tibble tidyr]; }; - tidyRSS = derive2 { name="tidyRSS"; version="1.2.3"; sha256="1m21cwdbhial4h3084vqs0j6zwa267ia75gyjivprqjzcccjaqdp"; depends=[dplyr httr jsonlite lubridate magrittr purrr testthat tibble xml2]; }; + tidyRSS = derive2 { name="tidyRSS"; version="1.2.4"; sha256="0dvpaawwm6jbwxiilxllzmifjwx9spbl57jmi8lkcq948abn84vg"; depends=[dplyr httr jsonlite lubridate magrittr purrr sf stringr testthat tibble xml2]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; tidycensus = derive2 { name="tidycensus"; version="0.4.6"; sha256="1czfdwm5bn0xpqm43mvb5bd30m5kdxikaq21gxkj41r78z69qncl"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; tidygenomics = derive2 { name="tidygenomics"; version="0.1.0"; sha256="0n6km2zhdmbgacn6rzamrn506d9y3sl6yp2q6fd9x7kzgz09aq4n"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp tidyr]; }; tidygraph = derive2 { name="tidygraph"; version="1.1.0"; sha256="1cqmii1pia5s8cj1hfm5jh4qgg9dn65dcb666bqfhq51nzgwy6b4"; depends=[dplyr igraph magrittr R6 Rcpp rlang tibble tidyr]; }; - tidyhydat = derive2 { name="tidyhydat"; version="0.3.3"; sha256="01l4dwsrrmfavskbqxcq5v1ykggk363nn0m0nf6ks51xdr7lckf5"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr RSQLite tibble tidyr]; }; + tidyhydat = derive2 { name="tidyhydat"; version="0.3.4"; sha256="03kjcvh6g6xwd72fm8yyflyy72zm6fd8d0rlb6wabzq7hbzhfpp0"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyimpute = derive2 { name="tidyimpute"; version="0.1.0"; sha256="03b475nn206hxq3i0n7j1qws82rwwk5vqivmdg5mff44dvz4gl5s"; depends=[dplyr na_tools rlang]; }; - tidyinftheo = derive2 { name="tidyinftheo"; version="0.2.1"; sha256="1lh1smhnfg5x35ans3rlj6nvrqwkaiac3ycy7r8wz5h9fhlri3pg"; depends=[dplyr ggplot2 infotheo magrittr purrr rlang tibble tidyselect tidyverse]; }; tidyposterior = derive2 { name="tidyposterior"; version="0.0.1"; sha256="09q2j6kjwqphdzi60w26mlax9fnmndw7s3fsxfcj0pjjl8688w52"; depends=[broom dplyr ggplot2 purrr rlang rsample rstanarm tibble tidyr]; }; tidypredict = derive2 { name="tidypredict"; version="0.2.0"; sha256="1hq9xzaa234679qvf02nc5w8l21yh1f3dhl76zxzqc7na7chn13k"; depends=[dplyr purrr rlang tibble tidyr]; }; - tidyquant = derive2 { name="tidyquant"; version="0.5.4"; sha256="1ip3vivn6x0ip2y4izq4cz5lh31ygsymkvbb4jqvb8dj5wywr2hq"; depends=[alphavantager broom curl devtools dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr rvest scales stringr tibble tidyr tidyverse timeSeries timetk tseries TTR xml2 xts zoo]; }; - tidyr = derive2 { name="tidyr"; version="0.8.0"; sha256="1qjpbj1a2vw6nw4hdb6fgassnrxrdpqwf9a8i6wqnv3wxvjb6zqb"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; }; + tidyquant = derive2 { name="tidyquant"; version="0.5.5"; sha256="0kh3y291j5d6qbqr45jjzjpwa02r0ymb7gdr0zd9g3d4czllwv95"; depends=[dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod rlang stringr tibble tidyr tidyverse timetk TTR xml2 xts]; }; + tidyr = derive2 { name="tidyr"; version="0.8.1"; sha256="0485f19mkkglc4bv57y6bm6l9rfgd878hsz2xdg1nwgbqchjhgix"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; }; tidyselect = derive2 { name="tidyselect"; version="0.2.4"; sha256="1592dbzawhd1hpsp9919l4sifyiaaj6xr7lnhsbwa6jwmmb0xcsw"; depends=[glue purrr Rcpp rlang]; }; - tidystats = derive2 { name="tidystats"; version="0.1"; sha256="0dy4yqdc0y8pmix29100x80q828rapnq9y3qn2p6rs763c7canmr"; depends=[dplyr magrittr purrr readr tibble tidyr]; }; + tidystats = derive2 { name="tidystats"; version="0.2"; sha256="15f12zizgql1y303pr4vhmvpmpxib0wpybd0b5gbx281iglpdsc0"; depends=[dplyr knitr magrittr purrr readr stringr tibble tidyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.2"; sha256="1jk5yqkjf33arbbfgfzk7ym943gy95n3yncybmvwbjsff07qpmaw"; depends=[attempt dplyr magrittr purrr rlang stringdist]; }; - tidytext = derive2 { name="tidytext"; version="0.1.8"; sha256="10w3h71pqbfa0n5b0a63vajc7hbwjy8bazdwmi8260zz82fvhfvl"; depends=[broom dplyr hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; }; - tidytree = derive2 { name="tidytree"; version="0.1.8"; sha256="0nhhr0qmigvvzchy4pgg7pm2cn50li4zg37b4bdlhkzfzhxz4y3m"; depends=[ape dplyr lazyeval magrittr tibble]; }; + tidytext = derive2 { name="tidytext"; version="0.1.9"; sha256="1hkxg23cc44496w8nvrm1zsbk05fhk423k12ss6ay2da3n8khi0f"; depends=[broom dplyr hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; }; + tidytree = derive2 { name="tidytree"; version="0.1.9"; sha256="0bxgmwamiclr4fnn5dk7hnkl7jf4p1fgwga2gfa3a6lwa79qgpwn"; depends=[ape dplyr lazyeval magrittr tibble]; }; tidyverse = derive2 { name="tidyverse"; version="1.2.1"; sha256="0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd"; depends=[broom cli crayon dbplyr dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; - tidyxl = derive2 { name="tidyxl"; version="1.0.1"; sha256="10ckabv7aa744wxs3d5y9cd3a4c0x89gg91l23w7ddvcgjziq7an"; depends=[piton Rcpp]; }; + tidyxl = derive2 { name="tidyxl"; version="1.0.3"; sha256="02icd5xwyimdlzrn6ikj6rrs3kj3qw1ngap69cf89mvmlkp93y79"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-5"; sha256="0asf2bws3x3yd3g3ixvk0f86b0mdf882pl8xrqlxrkbgjalyc54m"; depends=[]; }; tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; tigerstats = derive2 { name="tigerstats"; version="0.3"; sha256="12wrghipgypkhwwkmaxb6n0qx9fgxk82dc6wlh56rblsvciv2hj0"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData]; }; tigger = derive2 { name="tigger"; version="0.2.11"; sha256="1kbqlfr3lsiiv0l7dzahna706zb4mx0gfx91220n2ckfc81pyrv5"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval tidyr]; }; - tightClust = derive2 { name="tightClust"; version="1.0"; sha256="0psyzk6d33qkql8v6hzkp8mfwb678r95vfycz2gh6fky7m5k3yyz"; depends=[]; }; - tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.4"; sha256="0c733mb2fzskrfa4664w6psp80wdr5hc7f9rp516y59a8rr3xzr0"; depends=[DBI RSQLite]; }; + tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; + tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; tigris = derive2 { name="tigris"; version="0.7"; sha256="0azfp8ahf63a10862669wsamf0270rcyrmknc331vjs52b3qlrvl"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; - tikzDevice = derive2 { name="tikzDevice"; version="0.11"; sha256="09qbwf7k2512q7yimabfr97birvspkn13hyybqsgqm1iiaiwwps3"; depends=[filehash png]; }; + tikzDevice = derive2 { name="tikzDevice"; version="0.12"; sha256="0srp7q91714sday4n2nbhnkwjy84q6kw7iihlskr7ckjdcqk7s3v"; depends=[filehash png]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; + tiler = derive2 { name="tiler"; version="0.2.0"; sha256="0pdr34zlqvkkimp03nmj9p9ak39c2927ggyrhy7sc7h7k4x59dh8"; depends=[png raster rgdal sp]; }; tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; time2event = derive2 { name="time2event"; version="0.1.0"; sha256="1xkvarw53lcn07wqq7ly5znr6vjq7x72xb0piq5igdmwqmg2y26g"; depends=[survival timereg]; }; timeDate = derive2 { name="timeDate"; version="3043.102"; sha256="0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"; depends=[]; }; timeROC = derive2 { name="timeROC"; version="0.3"; sha256="0xl6gpb5ayppzp08wwry4i051rm40lzfx43jw2yn3jy2p3nrcakb"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.3"; sha256="1jdmcbghqmp9phfx7bii8nfqdc10f1nqmi1mk70n0fysm6cdvhn6"; depends=[gss lattice pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="3042.102"; sha256="185hmd70hida6i12mxbrccapkpwb6jhf6cmcfbz8bc3sv9h3q5gs"; depends=[timeDate]; }; - timedelay = derive2 { name="timedelay"; version="1.0.7"; sha256="01rl3nwazxlypimaclyjr6ihwn75jfaffp43b94msvf25xd30aiy"; depends=[mnormt]; }; + timechange = derive2 { name="timechange"; version="0.0.1"; sha256="054zh151am6asadj39nz3l4s37kip0bcjwg8mw59s78s5gyjbwds"; depends=[Rcpp]; }; + timedelay = derive2 { name="timedelay"; version="1.0.8"; sha256="18f8x3lxhh954vn75gjg27iwyi81x7ajh1xh0bxafs7qivnimxvm"; depends=[MASS]; }; timeline = derive2 { name="timeline"; version="0.9"; sha256="0zkanz3ac6cgsfl80sydgwnjrj9rm7pcfph7wzl3xkh4k0inyjq3"; depends=[ggplot2]; }; timelineR = derive2 { name="timelineR"; version="0.1.0"; sha256="1a2pdy5b9nca66khydrb50yzjglr78lxrgzisw6bp2simk5cix51"; depends=[dplyr futile_logger ggplot2 gtable lubridate mtconnectR stringr]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; - timeordered = derive2 { name="timeordered"; version="0.9.8"; sha256="1j0x2v22ybyl3l9r3aaz5a3bxh0zq81rbga9gh63zads2xy5axmf"; depends=[igraph plyr]; }; + timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; timereg = derive2 { name="timereg"; version="1.9.2"; sha256="0ddckk8vrfkk4kwlrjms6niry6g6c8dz0yf96z2kq03jgs06kfdh"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; }; - timetk = derive2 { name="timetk"; version="0.1.0"; sha256="0z4zb00c4xbjn3ppz6ypcab2ahkr76mj6v68yfxkjb233cb18641"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; }; + timetk = derive2 { name="timetk"; version="0.1.1"; sha256="0m8l9ivww5aykdfab6bk9khy7jqkd3yrzbz2r78xnsfzipa9bzmk"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; timevis = derive2 { name="timevis"; version="0.4"; sha256="08caa5gilh1c0z41lm3ghf6cpnlsdjfm1v7ha73jxv1655kznmpx"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; @@ -11896,24 +12085,26 @@ in with self; { tint = derive2 { name="tint"; version="0.1.0"; sha256="1hczc2nrm8xgvw3igkfnlqyz73686l447kigsrd6m796v8ny1gbf"; depends=[htmltools knitr rmarkdown]; }; tinyProject = derive2 { name="tinyProject"; version="0.5"; sha256="10sllhjcla4pfgp5n1y5vi318q9bcy82j88rx3k1sgzmbq1nc1c2"; depends=[brew devtools]; }; tinytex = derive2 { name="tinytex"; version="0.5"; sha256="1pg4jfyvandjwz3lmr38pbqi9d045iwkk3xklhsfhhxq6aviq9p7"; depends=[]; }; + tiobeindexr = derive2 { name="tiobeindexr"; version="0.1.0"; sha256="045b0c0mn3qlasclpzc2k3x1xlmcdvg2ixc2n9m6gjmhp2fdm499"; depends=[rvest xml2]; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; + tippy = derive2 { name="tippy"; version="0.0.1"; sha256="0kkyi4s4ffpyjyfl89cd5y788ab1p253rx179k422y3y1z6w1md7"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="0.1.1"; sha256="138xmkfad0xjrmr9v3ladbwsyknyad27wxcav03n6f72plhxmxb6"; depends=[broom purrr tibble]; }; tis = derive2 { name="tis"; version="1.34"; sha256="01bpl8q2n49wpr2gghkcv1zf16b3375xa71mv0q7wwn0da3n7m0n"; depends=[]; }; titan = derive2 { name="titan"; version="1.0-16"; sha256="0x30a877vj99z3fh3cw9762j5ci56964j2466xfbwcywhn9njz5r"; depends=[boot lattice MASS]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titrationCurves = derive2 { name="titrationCurves"; version="0.1.0"; sha256="0z127sihd262mdik46sq9vcf05s7jsqmkpm3p4d779viw74bl768"; depends=[]; }; tkRplotR = derive2 { name="tkRplotR"; version="0.1.1"; sha256="0fr30c2xjgpjh0pkqv0m7g413wkzzffbak7ak26k7bsi2ls341qa"; depends=[]; }; - tkrgl = derive2 { name="tkrgl"; version="0.7"; sha256="1kpq5p6izqrn1zr53firis3rmifq9lf6326lf3z7l1p82nf2yps5"; depends=[rgl]; }; + tkrgl = derive2 { name="tkrgl"; version="0.8"; sha256="1c5jiahqpf3nfybkzmks785dlkchjdisvknxkb0biv3xj9nzgz14"; depends=[rgl]; }; tkrplot = derive2 { name="tkrplot"; version="0.0-23"; sha256="1cnyszn3rmr1kwvi5a178dr3074skdijfixf5ln8av5wwcy35947"; depends=[]; }; tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; tlm = derive2 { name="tlm"; version="0.1.5"; sha256="1iw08pa70nb25fnv64834s5c8vl456a2rcng7x6v9vs5q37610g6"; depends=[boot]; }; tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; }; - tm = derive2 { name="tm"; version="0.7-3"; sha256="048wrk1grd3r95a46aaxrwsgpj1l5afbzda8434b1zr1wr8y3hzk"; depends=[BH NLP Rcpp slam xml2]; }; + tm = derive2 { name="tm"; version="0.7-4"; sha256="1vvc0arl1w5g8r8bp5w95w79d7hnyfvkhsw5nq2qxql1sjsq69ya"; depends=[BH NLP Rcpp slam xml2]; }; tm_plugin_alceste = derive2 { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; }; tm_plugin_dc = derive2 { name="tm.plugin.dc"; version="0.2-8"; sha256="0z843i2wlmx75748p95jz3j45d9bzmlmqa3awgya24k7bdhpd6kd"; depends=[DSL NLP slam tm]; }; tm_plugin_europresse = derive2 { name="tm.plugin.europresse"; version="1.4"; sha256="03qi9rkfwgjvir4cjpi9imc8zaldvan42v9lqfr5d6zhr0ajy6wx"; depends=[NLP tm XML]; }; tm_plugin_factiva = derive2 { name="tm.plugin.factiva"; version="1.7"; sha256="1zcddarjd083p3sly49wvsnbn6bmpx5wd1bqm3acgydxk8y84nif"; depends=[NLP rvest tm xml2]; }; - tm_plugin_lexisnexis = derive2 { name="tm.plugin.lexisnexis"; version="1.3.1"; sha256="15k4bzx1p271yzskkijlf2pm6m7pb5dqxmfab9rhwynllszv96if"; depends=[ISOcodes NLP tm XML]; }; + tm_plugin_lexisnexis = derive2 { name="tm.plugin.lexisnexis"; version="1.4.0"; sha256="0q4njhfpwqym9d8xfbb577vn6g9ks4nkpb4bh6j31nzg7yp96av7"; depends=[ISOcodes NLP tm xml2]; }; tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.1"; sha256="0ca2w2p5zv3qr4zi0cj3lfz36g6xkgkbck8pdxq5k65kqi5ndzyp"; depends=[NLP tm]; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; }; tmap = derive2 { name="tmap"; version="1.11-2"; sha256="1cinbsfhi8pngidxp3brmba1willknavlrpjzywm85wp7973y045"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer rgdal rgeos sp spdep tmaptools]; }; @@ -11926,7 +12117,6 @@ in with self; { tmlenet = derive2 { name="tmlenet"; version="0.1.0"; sha256="1pg9w7yci9j0m1cxi0nwdpp6jwap0b7ql4xkh25kjbq3w5r8w8pr"; depends=[assertthat data_table Matrix R6 Rcpp simcausal speedglm stringr]; }; tmod = derive2 { name="tmod"; version="0.36"; sha256="054kg3rwcmrn1y1x1ba8wflb6m76nmf69g4yj3x1vw0qjjs421nh"; depends=[beeswarm plotwidgets tagcloud XML]; }; tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; - tmuxr = derive2 { name="tmuxr"; version="0.1.0"; sha256="0njd1wdk11bni0pinplyzywqlmswkq2xq7qid68v4s93q9069zn6"; depends=[magrittr purrr stringr]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; }; tnam = derive2 { name="tnam"; version="1.6.5"; sha256="0jbwnsnn6875yprmh6y2i0bvr875hfsg7wfsj6ydmjpr5cpqqk56"; depends=[igraph lme4 network Rcpp sna vegan xergm_common]; }; @@ -11956,40 +12146,41 @@ in with self; { tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; }; - trackdem = derive2 { name="trackdem"; version="0.3.1"; sha256="10qq9217mpd4abhkwsh4yjzpi06qpqa5rnwhxls6yzmymf9apngl"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo SDMTools shiny]; }; + trackdem = derive2 { name="trackdem"; version="0.4.1"; sha256="0r33ph7vk5i4nl3bw4642cpy743arly9xmn3n5jk2961q80m0kq5"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo SDMTools shiny]; }; trackeR = derive2 { name="trackeR"; version="1.0.0"; sha256="0z200jlkgcdxwss0ckbh3vqcfw56fi7pivr9vzf4rkwyf2n6v25s"; depends=[fda ggmap ggplot2 gridExtra gtable jsonlite leaflet raster RSQLite scam XML zoo]; }; trackr = derive2 { name="trackr"; version="0.7.5"; sha256="1achrnkqnpdjp2vr1s7xsl8fdfdyifgv5vr00b3xq9pkr4jggj6z"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools knitr lattice miniUI RJSONIO rmarkdown rsolr shiny]; }; tractor_base = derive2 { name="tractor.base"; version="3.2.2"; sha256="1pbh9hand7h68vxap2qis3a7zs5qkrj2wxk8flqyvhx50p98wigv"; depends=[ore reportr shades]; }; + trade = derive2 { name="trade"; version="0.5.3"; sha256="0v0yw261daag0hw3sc7dh2bpm8sd3r46xbcbcbxv7qb59rad756w"; depends=[antitrust]; }; traitr = derive2 { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest gWidgets proto]; }; traits = derive2 { name="traits"; version="0.3.0"; sha256="155y8j69214xxi1bfk07k30zlpm3q6fmz7ydhnkvw0kv4l0i5pc5"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajectories = derive2 { name="trajectories"; version="0.1-4"; sha256="0vwfbx5s8ywasxwv8cld4s6r96vlyknxipp49rsfpqn94nawhwnx"; depends=[lattice sp spacetime]; }; - trajr = derive2 { name="trajr"; version="1.0.0"; sha256="1q17lgwgxn9j3ym1vikrnnyqf61ri3vl7jqq3f1fvy2280nac0s8"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.2-0"; sha256="02jbgp011qbinyjwdmj0nc2mpphmqlhm0dvvs7x2lfngrw1fw163"; depends=[basefun Formula mlt multcomp sandwich survival variables]; }; - tranSurv = derive2 { name="tranSurv"; version="1.1-5"; sha256="0vn3cywb331kxz6sxidprfh0lmgsmwlnzbv80bfrnahhmhmss8rl"; depends=[rootSolve SQUAREM survival]; }; + trajr = derive2 { name="trajr"; version="1.1.0"; sha256="1wfncd3ays8wqz8hhwz46diyac49ivz31qm1rvy1gkbw71icmnd7"; depends=[plotrix signal]; }; + tram = derive2 { name="tram"; version="0.2-2"; sha256="1lyk2srbj5axh2h8y54sxn5l36sa9q9nkkb7vvbhms5dinld1z6j"; depends=[basefun Formula mlt multcomp sandwich survival variables]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; - translateSPSS2R = derive2 { name="translateSPSS2R"; version="1.0.0"; sha256="11qnf44aq0dykcsv29faa9r4fcw9cc9rkgczsqx3mngvg3bilada"; depends=[car data_table e1071 foreign Hmisc plyr stringr tidyr zoo]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; transport = derive2 { name="transport"; version="0.9-4"; sha256="0ham0cla4qwfd6fqyckpdl2n2gm3qnl7ry1xi9kjvbajlcc0xwi2"; depends=[Rcpp]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; }; treatSens = derive2 { name="treatSens"; version="2.1.3"; sha256="159dpd4wg0i4cidg40lad665sm3j4qch8d1y3k9chwggbhcad5jn"; depends=[BH dbarts lme4 mvtnorm nlme Rcpp RcppEigen]; }; tree = derive2 { name="tree"; version="1.0-39"; sha256="0q2dnl1hvyaw76lkfq0i9d92z68r29ssb3a9j8jknnzx896x055x"; depends=[]; }; - tree_bins = derive2 { name="tree.bins"; version="0.1.0"; sha256="0cqpvh9cbnsk4qv886n2sc1v1s51z4m6aj0ydqzijvy6ckigbiij"; depends=[data_table dplyr rpart rpart_utils]; }; - treeClust = derive2 { name="treeClust"; version="1.1-6"; sha256="07cw8mnfrkw733ga3aq4am1pj50g8vk0rw6b3lflnb4wdhm2fgbi"; depends=[cluster rpart]; }; - treeDA = derive2 { name="treeDA"; version="0.0.3"; sha256="1m9959jya872sdkmw8hcwnjqj7r5x4h0c29g4j2rnxklbspn27j9"; depends=[ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; + tree_bins = derive2 { name="tree.bins"; version="0.1.1"; sha256="1flrkhdqimsn8dxn97xzl1fykx916i1dis1bfany44yk0cjmd85g"; depends=[data_table dplyr rpart rpart_utils]; }; + treeClust = derive2 { name="treeClust"; version="1.1-7"; sha256="1s7kh6q0bkixsygrip95zf1bi10ihddsa5lq9dfxd68yh8rsby6z"; depends=[cluster rpart]; }; + treeDA = derive2 { name="treeDA"; version="0.0.4"; sha256="0zhzb21lvxk278ysl275g39y2r8dlgqdix5rfg2pwv3nzj2531rc"; depends=[ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; treebase = derive2 { name="treebase"; version="0.1.4"; sha256="1bx31jahb0wy2g8wl1z71vy659lfi8fq1sbbaxvyixzcwymix1wq"; depends=[ape httr RCurl XML]; }; treeclim = derive2 { name="treeclim"; version="2.0.0"; sha256="0hiba5xc6rp5zzka31k5klmlllpgbnla4pm920zk12jxn796953l"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; }; + treedater = derive2 { name="treedater"; version="0.2.0"; sha256="18y1nbpinpcnczyn0kwlcnhbmnxv7814ms6l5qfikdqrxd2gx3si"; depends=[ape limSolve]; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; }; treeman = derive2 { name="treeman"; version="1.1.2"; sha256="0imwg4wi85gjhbhpym5gs0my8kacx28l74m5xbfwqdi4gxpz3kkc"; depends=[ape bigmemory plyr RJSONIO stringr]; }; treemap = derive2 { name="treemap"; version="2.4-2"; sha256="15bdgkdwryb55v82b3hpcx4ykfg5z7zf10h0wwknf6kl1kn34v90"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; - treemapify = derive2 { name="treemapify"; version="2.4.0"; sha256="1cg8jwlls3r3kjlmmxcm9id2spsn5ggsjrw0826ih2khdlnjc0jy"; depends=[ggfittext ggplot2 plyr]; }; + treemapify = derive2 { name="treemapify"; version="2.5.0"; sha256="0s8qrm2ifbpm31zwyc2f2f6jyc04r06vy6vgq3k99aq67mz6krdq"; depends=[ggfittext ggplot2]; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; - treeplyr = derive2 { name="treeplyr"; version="0.1.3"; sha256="00fkmmzivwy603grfbwdabsik1swkyba7sbwcjzxbgsmx3s472g6"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; - treespace = derive2 { name="treespace"; version="1.1.2"; sha256="0am3ssdxf8v98hffncrg1zdpgcr79gvvr6z2mara04r0rxk86kaw"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp RLumShiny scatterD3 shiny shinyBS]; }; + treeplyr = derive2 { name="treeplyr"; version="0.1.4"; sha256="140j1cd8a34fww8bi6b7mi3c7c1nik5sajk085nyfmjq7lxds0cy"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; + treespace = derive2 { name="treespace"; version="1.1.3"; sha256="0s3hmmjx2hf8l0piwz6mddd80hb5jsljnpzpakighqj9iiah5jjv"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treethresh = derive2 { name="treethresh"; version="0.1-11"; sha256="1fksyn9mycr6dpw1yh5b3fa7fk7ndz7q39174daplm55jbrz1dr5"; depends=[EbayesThresh wavethresh]; }; + trekfont = derive2 { name="trekfont"; version="0.9.2"; sha256="1njmllp6i10rafjq5c9z1qp3bmy8zr3nxv9cjw75w5fnrh50rlzh"; depends=[]; }; trelliscope = derive2 { name="trelliscope"; version="0.9.8"; sha256="1581ss5c3f7mnv6s3p9f8kfwnks0l80kxwpxv9mq61w3lf9fksm2"; depends=[base64enc curl data_table datadr digest DistributionUtils ggplot2 hexbin htmltools htmlwidgets jpeg jsonlite lattice png rsconnect shiny]; }; trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; }; trend = derive2 { name="trend"; version="1.1.0"; sha256="06yifqbsvxbmk5gld4z2nnyhf59v8ks5xjwacmb25mv9r6bn388b"; depends=[extraDistr]; }; @@ -11997,6 +12188,7 @@ in with self; { triangle = derive2 { name="triangle"; version="0.11"; sha256="0983bvywbyl0sms29j1hby2qy6p984vy4r0q1awh1f8gr01bbk5b"; depends=[]; }; triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; tribe = derive2 { name="tribe"; version="0.1.6"; sha256="0sx6hyfyg8x0vxq4l4gvv5kb8afrbjp3qk3s48l85vf5v1chwnhf"; depends=[bazar dplyr lazyeval magrittr rlist rstudioapi]; }; + tricolore = derive2 { name="tricolore"; version="1.0.3"; sha256="0lycsb29havx911q0fv4r184nr81w1c7yvy4sn6jqg35g2p1qqdv"; depends=[assertthat dplyr ggplot2 ggtern shiny]; }; triebeard = derive2 { name="triebeard"; version="0.3.0"; sha256="1hqyz57gph02c9fdc07lxz113bbklif3g18sw8jan6pakhhdc7dz"; depends=[Rcpp]; }; trifield = derive2 { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdya0ihpkwnh20sgj3rc7fmzjil47kqscvy"; depends=[]; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; @@ -12008,9 +12200,10 @@ in with self; { tripack = derive2 { name="tripack"; version="1.3-8"; sha256="0pf707z6xysxvcs508nadga3mglpvmfk6r061qda8acn58ll1cvb"; depends=[]; }; triversity = derive2 { name="triversity"; version="1.0"; sha256="1bar2bpy8jvj91jmzzdwy6rlvirsbxrzqnx4r825irqhc69gc53r"; depends=[data_tree Matrix]; }; tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; }; + tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; }; tropr = derive2 { name="tropr"; version="0.1.2"; sha256="1nm97sqmj4nfy7h8z58gmd9ipyrkw6skh2wx2g3ivm9pn3m50bwl"; depends=[digest httr magrittr rvest stringr xml2]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; - trtf = derive2 { name="trtf"; version="0.3-0"; sha256="1fca08lkwaa9m7ac69i3k3d8dxn8fp231yh68gz3ym8ja9vhzd7w"; depends=[Formula libcoin mlt partykit sandwich variables]; }; + trtf = derive2 { name="trtf"; version="0.3-2"; sha256="16nsrg68vn9p4s5al7fg6fg02cr3ccswzmhig7k4irprsnhdy4fr"; depends=[Formula libcoin mlt partykit sandwich variables]; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; }; truncSP = derive2 { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[boot truncreg]; }; truncdist = derive2 { name="truncdist"; version="1.0-2"; sha256="02ihw4ixhadwr3sqm6r264i8vpcaz8pn69vkzabd8fwqvn5vcj5q"; depends=[evd]; }; @@ -12019,12 +12212,14 @@ in with self; { truncreg = derive2 { name="truncreg"; version="0.2-4"; sha256="1rmf1v2khsx82yzyyk51k7fbnbchf21lj9yqrays1z2mx3p1l1fc"; depends=[maxLik]; }; trust = derive2 { name="trust"; version="0.1-7"; sha256="013gmiqb6frzsl6fsb5pqfdapwdxas0llg954hlcvgki9al5mlg3"; depends=[]; }; trustOptim = derive2 { name="trustOptim"; version="0.8.6.2"; sha256="1nsl8jd6cna52b5dd92jw3sh84jqpg7gazskn7166bcjbph19bf7"; depends=[Matrix Rcpp RcppEigen]; }; - tsBSS = derive2 { name="tsBSS"; version="0.4"; sha256="0mli9y63bp7n21wzz5gga8i0c8f3db6cdcc5jp4zm529svilzkxm"; depends=[forecast ICtest JADE Rcpp RcppArmadillo]; }; - tsDyn = derive2 { name="tsDyn"; version="0.9-46"; sha256="1cq36qxpimiwlzjnnjqj5rjb3l1h684day4kch99vza1v62h1lkv"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; + tryCatchLog = derive2 { name="tryCatchLog"; version="1.0.2"; sha256="0452xcfv98d2nfdhi9l2033s381lsa1kjghmrk05d3kc88d22np7"; depends=[futile_logger]; }; + tsBSS = derive2 { name="tsBSS"; version="0.5.1"; sha256="0hysb132cjymlqg5bcsqdvii7kyx3rh07c4bsds636j1cypi86kd"; depends=[boot forecast ICtest JADE Rcpp RcppArmadillo]; }; + tsDyn = derive2 { name="tsDyn"; version="0.9-48"; sha256="01yqfd156ffnxy9wyd3s9vkpkc9n0davs1cq606sbpvvkmphnws3"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; tsModel = derive2 { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; }; tsPI = derive2 { name="tsPI"; version="1.0.2"; sha256="0lw4s7gxn4xldsk5f3dz27bb9jywa14195703b5q1497h9j966gk"; depends=[KFAS]; }; tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-2"; sha256="19535zlr6gjg45f8z6hm98pamgn20z19m8qb63997vbj4azsrjfv"; depends=[]; }; + tsbox = derive2 { name="tsbox"; version="0.0.3"; sha256="1dcfp0lg6fvhhkspgk9a41crnfq7gx50ll4a4a0qil795349srnj"; depends=[anytime data_table]; }; tsbridge = derive2 { name="tsbridge"; version="1.1"; sha256="0mry3ia54cdfydpzm8asrq1ldj70gnpb5dqzj51w0jiyps2zlw6f"; depends=[mvtnorm tsbugs]; }; tsbugs = derive2 { name="tsbugs"; version="1.2"; sha256="130v4x6cfy7ddvhijsnvipm4ycrispkj1j0z5f326yb4v5lrk91x"; depends=[]; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; @@ -12033,21 +12228,21 @@ in with self; { tsdf = derive2 { name="tsdf"; version="1.1-4"; sha256="0kjcfh7vrnyg2aqzr5kkzdccriy2h5x1byzhdhvyb68fi4fjf4dh"; depends=[gsDesign]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.0.4"; sha256="0n5mh951799yd00sbxz0ia2s086kc12rk9xmkdyjvqj8d83vh1ff"; depends=[Cubist earth forecast gbm glmnet kernlab nnet opera pls ranger RcppRoll softImpute xts zoo]; }; - tseries = derive2 { name="tseries"; version="0.10-44"; sha256="0nz6v76hsxcprpgf84al5r0p08sr9qacqal4adndz9wmg604l4ag"; depends=[quadprog quantmod zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-45"; sha256="14s1glh5zzdvdl05a2z7ymhgf962svxf8xircghg5sc649lb33n0"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13"; sha256="0f2hycxyvcaj3s1lmva1qy46xr6qi43k8fvnm4md5qj8jp2zkazg"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfa = derive2 { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; }; tsfknn = derive2 { name="tsfknn"; version="0.1.0"; sha256="0gzij2fbgwavpsqmr7cp012lhii23fav4nsrbc2w9qingglcnqd1"; depends=[ggplot2]; }; tsgui = derive2 { name="tsgui"; version="0.0.3"; sha256="16cx68gq2f63wx7mhbv0aq6pr71wfbc035kjbjjsfrbagaq4ib13"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; tsiR = derive2 { name="tsiR"; version="0.3.0"; sha256="1brlwsbs4rac8z6cf1q3xm1apdi4ban5hj7p3qvz2yx810gbxp1d"; depends=[ggplot2 kernlab reshape2]; }; - tsibble = derive2 { name="tsibble"; version="0.1.5"; sha256="054vdbgndi3zr1jizjyasp33l5ifbkfcj1gs8h4bk8vvkp96nqdv"; depends=[dplyr lubridate pillar purrr Rcpp rlang tibble tidyr tidyselect]; }; + tsibble = derive2 { name="tsibble"; version="0.3.0"; sha256="0rakw6fwkxlvdwzw5cj31a6dkq88jr2ffrkdwc41vasdxzf6xwrc"; depends=[dplyr lubridate pillar purrr Rcpp rlang tibble tidyr tidyselect]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; tsna = derive2 { name="tsna"; version="0.2.0"; sha256="09q01jzj1rnv2f2jf7djnq5xrkp7lvykdbf4bfswsy0f95j0asx2"; depends=[network networkDynamic statnet_common]; }; tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-6"; sha256="0q4lkqasnsps8lzpiyk074nfhv29sbma080729c8l3ba1sa9pmyn"; depends=[forecast KFKSDS stsm]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; - tstools = derive2 { name="tstools"; version="0.3.6"; sha256="0hk98czp6ban95jw7x9bv53n44z6wlkb9gc341x5pfjhslfqccal"; depends=[data_table jsonlite xts zoo]; }; + tstools = derive2 { name="tstools"; version="0.3.6.1"; sha256="066bkm4hqkbhslk3f3vk9w4hzv3smg718vpav04byrvlcdiibv0c"; depends=[data_table jsonlite xts zoo]; }; tswge = derive2 { name="tswge"; version="1.0.0"; sha256="0wj0kyb1dcwfn8wjp7skgcflc48cr4va0i0jg8x970658if7z6fz"; depends=[astsa MASS PolynomF signal waveslim]; }; tsxtreme = derive2 { name="tsxtreme"; version="0.3.1"; sha256="0cfska93ws5x11pslcdhf5rrshxzh6ddlgmfkl9zlci2rqdbwz35"; depends=[evd MASS mvtnorm]; }; ttScreening = derive2 { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[corpcor limma MASS matrixStats sva]; }; @@ -12056,23 +12251,24 @@ in with self; { tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; ttutils = derive2 { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; - tuber = derive2 { name="tuber"; version="0.9.5"; sha256="0519qsgs8cnhd5qx5amh8rz6qa7fhryf5i9wjr38zrlrzvksqblh"; depends=[dplyr httr plyr purrr]; }; + tuber = derive2 { name="tuber"; version="0.9.7"; sha256="0ypfzxk0cyb81y61xxj4bhr5v9afnd7z9wi09xippjv8djbm78yb"; depends=[dplyr httr jsonlite plyr purrr]; }; tubern = derive2 { name="tubern"; version="0.1.0"; sha256="0wpn4aig6r1kpncrgrqra4kr0f07rdq7z4p2k0h28f7kww6l52vv"; depends=[httr jsonlite]; }; - tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.0"; sha256="0pxsnvzh5gy5dsdsqsmq8hkr597dnnv60b5dw7bqw493lavk2ccm"; depends=[]; }; + tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.1"; sha256="0lrylh0np0kbl4xx3gmlvid0g11fh0ad39wdwbz6hrmf5pzsjdjq"; depends=[]; }; tufte = derive2 { name="tufte"; version="0.3"; sha256="1fpv9ilf8ajynz38ny0abfnq20xzpgwbxaxj8ijwy8viki893bd0"; depends=[htmltools knitr rmarkdown xfun]; }; tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; - tukeytrend = derive2 { name="tukeytrend"; version="0.4"; sha256="14jyv8xb7ghbprn9gm5dlkry868i14ga63pfi78dhmq67i43s70x"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; + tukeytrend = derive2 { name="tukeytrend"; version="0.6"; sha256="0lsxfpkim4fkrm2lrjhn3w55c0p694vbkal3mjqk6vnmnycg9d71"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; tumblR = derive2 { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; tuneR = derive2 { name="tuneR"; version="1.3.2"; sha256="1xk66rrahfvvbjzpx2mkbmlmyj0l3vidd8kz24f72wh56gbdgbsa"; depends=[signal]; }; - tuneRanger = derive2 { name="tuneRanger"; version="0.1"; sha256="1mjq64phnphx10mrllcdy1rgm44ar8zr3ba5c4f9fpz4a5kjm7i1"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; + tuneRanger = derive2 { name="tuneRanger"; version="0.2"; sha256="0dk8nnh3sp0mlfr4vfc33r83a5kdgdi3sbqs0v4311i6dv72c1hn"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; - turboEM = derive2 { name="turboEM"; version="2014.8-1"; sha256="0g9nm1m542hslz8272n5qz6h59criyf71l2w218dvq34bcjcd3yy"; depends=[doParallel foreach iterators numDeriv quantreg]; }; + turboEM = derive2 { name="turboEM"; version="2018.1"; sha256="1xjpm2dxn48nflqriplxxbrjxv0spix6v7cp76gyh4kj8ylnbna6"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; }; turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; }; - tvR = derive2 { name="tvR"; version="0.1.1"; sha256="1amcaala3lqzj4cv51hdqd7xydvx4fjs7hprc0n0b1b6xv7md1v3"; depends=[imager Matrix Rcpp RcppArmadillo Rdpack]; }; - tvReg = derive2 { name="tvReg"; version="0.2.1"; sha256="10ad9475i6q1phrjc2hh1h9si14qv9z27yn0n31cnm9fqnprdqn8"; depends=[bvarsv MASS Matrix systemfit vars]; }; + tuts = derive2 { name="tuts"; version="0.1.1"; sha256="0mwc6lsnhxww041wh3020wz7w812asp1d6djv4n9pl7jil0kvkry"; depends=[coda doParallel foreach lomb mcmcplots rjags truncnorm]; }; + tvR = derive2 { name="tvR"; version="0.2.0"; sha256="06h90r0mlflsbbvg09s1ap8b16yfk285ma8rzzdi7cmkfdc5hlyx"; depends=[filling Matrix Rcpp RcppArmadillo Rdpack]; }; + tvReg = derive2 { name="tvReg"; version="0.3.0"; sha256="16z032j5wxyvgc29m8sgh4wcvsdam6a0srjwym52885rdslbkmjy"; depends=[bvarsv MASS Matrix systemfit vars]; }; tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; }; tvm = derive2 { name="tvm"; version="0.3.0"; sha256="1iv0qrks1zdiq8jaqr1h46snq8wc3g3q017hxc8zc6fqnsz1whf6"; depends=[ggplot2 reshape2]; }; twang = derive2 { name="twang"; version="1.5"; sha256="1sp1vb6l0mwpy9b9my5d3spc0q0zs7xg4dkmi4cl7hy7m9xy1dbk"; depends=[gbm lattice latticeExtra survey xtable]; }; @@ -12086,29 +12282,33 @@ in with self; { twoStageGwasPower = derive2 { name="twoStageGwasPower"; version="0.99.0"; sha256="1xvy6v444v47i29aw54y29xiizkmryv8p3mjha93xr3xq9bx2mq7"; depends=[]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; txtplot = derive2 { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"; depends=[]; }; + txtq = derive2 { name="txtq"; version="0.0.4"; sha256="0ipfc68m7l72wdnd4lmy7jm2dxs4xayzrd0g58m44dbikgwnw20i"; depends=[base64url filelock fs R6]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; - uGMAR = derive2 { name="uGMAR"; version="2.0.1"; sha256="038sy4blyz4dxqklk9g9r4glz0gvip84r6mb1ry4l7yh5nbii1dh"; depends=[Brobdingnag]; }; + uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.1.2"; sha256="0nvpmlp8dd250xn3g936wm52s2m6hb82lpvgpdak44ydhhswds0m"; depends=[ChemmineR usethis]; }; + uGMAR = derive2 { name="uGMAR"; version="2.0.2"; sha256="1rbhinq3s818c11kj5ybz1v3xmfpzz55i7mh20a0r3pq64jdh7kc"; depends=[Brobdingnag]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; uaparserjs = derive2 { name="uaparserjs"; version="0.1.0"; sha256="1zhz39jrvi64sj0wvwkm4y8gakfp6kz1knw4wn08kk4fa9ymyjvq"; depends=[dplyr purrr V8]; }; uavRmp = derive2 { name="uavRmp"; version="0.5.3"; sha256="05annx1vzpssxf5ycrgk2dizgl83zbwvl2x3bj8r5d8w5lvlpwrb"; depends=[brew data_table devtools gdalUtils geosphere htmltools htmlwidgets log4r maptools raster rgdal rgeos roxygen2 sf sp spatial_tools stringr zoo]; }; + ubci = derive2 { name="ubci"; version="0.0.2"; sha256="1k2fgzz286qyzqk216saz52s6044zhwgzgv6ra03513vgm9w45ld"; depends=[dplyr httr lubridate magrittr tibble tidyr]; }; ubeR = derive2 { name="ubeR"; version="0.1.4"; sha256="1ilclna04hd1ykcp2b3gcj0v4qznwx0d24yavxnf2yh5d91wr6z2"; depends=[dplyr ggmap ggplot2 ggthemes googleway httpuv httr jsonlite]; }; ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; }; ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; udapi = derive2 { name="udapi"; version="0.1.1"; sha256="0mhkf1s7pv8d5hbianzcpc3jxps2i6y955n6bplikcz1l1pnb9ib"; depends=[curl httr]; }; - udpipe = derive2 { name="udpipe"; version="0.5"; sha256="0vbnfqbjpc27lazf96dwfp3rz0857hlbpld4hqhxkb2sqmrd17c1"; depends=[data_table Matrix Rcpp]; }; + udpipe = derive2 { name="udpipe"; version="0.6"; sha256="0mzqyp3mhcchfknpspc79fmf5sf9n94dxpvssl393p2fd92gkajy"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.2.0"; sha256="1z1wx89b2d7z1a2zc4ai05v9slfpidja8f561jcsrcdi9hz2yp81"; depends=[rmarkdown]; }; ukbabynames = derive2 { name="ukbabynames"; version="0.1.1"; sha256="0vrwcf3hixd40ag6kb289anq2ys2k6vdhhsrjbizvndkyn8sr0r0"; depends=[]; }; - ukbtools = derive2 { name="ukbtools"; version="0.10.1"; sha256="1q1pp15lmia1cadiyqpbk532yy8r8hfskglybpkrxrjq2i1sdm4j"; depends=[dplyr ggplot2 magrittr plyr purrr readr scales stringr tibble tidyr XML]; }; - ukds = derive2 { name="ukds"; version="0.1.0"; sha256="00lgr9jy57bwa8p38mqcf4fk29g2w2wqk3pwf9av6f5lapzzgc94"; depends=[magrittr rio RSelenium stringr]; }; + ukbtools = derive2 { name="ukbtools"; version="0.11.0"; sha256="0ww8knrivykk8zx0mqc0bg9f1m64psdpjcxvdn4alhs88ywc71cf"; depends=[data_table dplyr ggplot2 magrittr plyr purrr readr scales stringr tibble tidyr XML]; }; ukgasapi = derive2 { name="ukgasapi"; version="0.13"; sha256="0bnblha96ldbxj0nqhcj26d1dk2xm6nkjqqval1jlc2pki20mr9n"; depends=[RCurl XML]; }; + umap = derive2 { name="umap"; version="0.1.0.3"; sha256="039pmpbh60m9p3i07mg4gv01p3x4ad0ngpcw76dgarr3yqkx4ic6"; depends=[Rcpp reticulate]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; - umx = derive2 { name="umx"; version="2.4.0"; sha256="1i5sa6kwj57spjm1smz9835i92vs70hsq0yl7m1s0i0f3k18k3fx"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; }; + umx = derive2 { name="umx"; version="2.8.0"; sha256="06r93dli8rxj0b7kz2s5395xnr8ka4bikdvfda882jjnv2rprdbb"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; + uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; uncmbb = derive2 { name="uncmbb"; version="0.2.0"; sha256="0cvbh7a81g52hd2qzp23jwwjd5406iszf4wilgrz8sjfrfgybgfm"; depends=[dplyr rlang]; }; - understandBPMN = derive2 { name="understandBPMN"; version="1.0.0"; sha256="1rps8915r5chnagyqlr4m3jw9hfc3lgwkfnqpxfmxxl7k1dv3mnh"; depends=[dplyr purrr Rcpp tibble tidyr XML]; }; - unfoldr = derive2 { name="unfoldr"; version="0.6.1"; sha256="1s1sy4x808w7nvc5kmskv7ksi2xcnfbb26qn0wkinbqma9aicqm2"; depends=[]; }; + understandBPMN = derive2 { name="understandBPMN"; version="1.1.0"; sha256="11ijxr5nzg6ivx2c9shgba9nfjb8ixypbj8jvhl7zjkwjrpb6f1y"; depends=[devtools dplyr purrr R_utils Rcpp tibble tidyr XML]; }; + unfoldr = derive2 { name="unfoldr"; version="0.6.5"; sha256="18k1bq3vdsiyg55zvs0sx5wgmslxvj283g742rkh214mfy5d89l5"; depends=[]; }; ungeneanno = derive2 { name="ungeneanno"; version="0.1.6"; sha256="0fm47vmzn4z73pn37p94r84lbkg5amk0sl78304ibwz0rhlda0y5"; depends=[httr XML]; }; uniCox = derive2 { name="uniCox"; version="1.0"; sha256="1glgk6k8gwxk3haqaswd2gmr7a2hgwjkwk2i1qc5ya7gg8svyavv"; depends=[survival]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; @@ -12118,24 +12318,23 @@ in with self; { uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; unitedR = derive2 { name="unitedR"; version="0.3.1"; sha256="06plbhjbn1gflpxarn21knhiwfr02vxprak9qcghl30fkkymd02r"; depends=[plyr]; }; unitizer = derive2 { name="unitizer"; version="1.4.5"; sha256="1ml1x9jvwmh8mg2w2j2g8ffibw6a1ihj0aih11zzf4gjhs0w5p9d"; depends=[crayon diffobj]; }; - units = derive2 { name="units"; version="0.5-1"; sha256="07hbhgk7vpfb94gyk028rrqy793aa8sgykkqm3k2fgb23nwcd6vl"; depends=[udunits2]; }; + units = derive2 { name="units"; version="0.6-0"; sha256="06g4ihhxvcc9d28zd1nznd2h5fd8zamq7jcxw6qj0ghb8878mw2n"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.3-0"; sha256="0haf3s3pc5bhsm6y5njghr9w8ifsjxczm5r7g0ynylwzvd019n8b"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.1-4"; sha256="041cc1jn95zababc4i84c378i204zkn865k2vd7mk1piwm3qkrj5"; depends=[Hmisc robustbase]; }; unix = derive2 { name="unix"; version="1.3"; sha256="1l5w22j0h3qzya13wx7y8lx2baw496vcmn39l2y8r1v38as9dybc"; depends=[]; }; unjoin = derive2 { name="unjoin"; version="0.0.3"; sha256="08vjgl4dnh9kycrvdq5ngf57fy61n0nc582bi4znv06pq696rkwp"; depends=[dplyr rlang tibble]; }; unmarked = derive2 { name="unmarked"; version="0.12-2"; sha256="1ql8l7kc8py7zand164w3yszqbmwyxvrkjvr10l4hx2mkcnvxzx0"; depends=[lattice plyr raster Rcpp RcppArmadillo reshape]; }; - unpivotr = derive2 { name="unpivotr"; version="0.3.1"; sha256="184xpnvcc8k0nxqad3q9qsj47g7icw98sm9bnx8fz4ga4zppxn4p"; depends=[data_table dplyr dtplyr magrittr purrr rlang tibble tidyr xml2]; }; + unpivotr = derive2 { name="unpivotr"; version="0.4.0"; sha256="0zixkrxizfa309bfscivdjkz0c62xxrrfnbp829pgj2pvyicki50"; depends=[cellranger dplyr forcats magrittr pillar purrr rlang tibble tidyr xml2]; }; unrepx = derive2 { name="unrepx"; version="1.0"; sha256="1dzvwpza60y9p7kz1f0bm20wid5jyxx9pma4w41az9shq5kkr0aj"; depends=[]; }; unrtf = derive2 { name="unrtf"; version="1.2"; sha256="11q2p6cnf1pqsh8sys45gb4xf713bh693lm59d8nw09kcbm23210"; depends=[sys]; }; - unsystation = derive2 { name="unsystation"; version="0.1.1"; sha256="0w5llr2kyv7g5fx5yvlyqwj4da5k5fq1f2y70c9pjdzrny9lpz4q"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; + unsystation = derive2 { name="unsystation"; version="0.2.0"; sha256="02da7wzzk5bwd475i67v5x04ay2bn5yd5xffl1asqcqxcc5sy0m8"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; untb = derive2 { name="untb"; version="1.7-3"; sha256="1324gn42qxw4cf3jg9vd8nwxiw4w4fg6p2xhzmn636q5wlziln5c"; depends=[Brobdingnag partitions polynom]; }; unvotes = derive2 { name="unvotes"; version="0.2.0"; sha256="0wanvivwm1nmqadq2vapg27kasnjnr0a4np2kw54wj9pg21izqic"; depends=[]; }; - upclass = derive2 { name="upclass"; version="2.0"; sha256="0jkxn6jgglw6pzzbcvi1pnq4hwfach3xbi13zwml4i83s3n5b0vg"; depends=[mclust]; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; upmfit = derive2 { name="upmfit"; version="0.1.0"; sha256="0f0rk606v17abgw3mwlwihl6fsxprp44h2xbhv1675i18i36vbgx"; depends=[mcmcplots R2jags]; }; - uptasticsearch = derive2 { name="uptasticsearch"; version="0.2.0"; sha256="09vc26vpghc5lwlchmn7h8khy7s0jhcb8lqd1asr5l178kfpv3w8"; depends=[data_table futile_logger httr jsonlite purrr stringr uuid]; }; + uptasticsearch = derive2 { name="uptasticsearch"; version="0.3.0"; sha256="09g50szxbgc7x2py647lzwmljspks7s6xbbjplbzbpkdc2z4pndh"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; }; uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; - upwaver = derive2 { name="upwaver"; version="1.0.1"; sha256="0pl5r1rh91s8i74zrsrblp6mjn371a2lp01f5d37d1vnjxc3dn9n"; depends=[assertthat httr rjson XLConnect]; }; + upwaver = derive2 { name="upwaver"; version="1.1.0"; sha256="1hchdh6h021bxw9516500ki7nqk8bprxwrinibl9wzi70xrb9z4i"; depends=[assertthat httr rjson XLConnect]; }; uqr = derive2 { name="uqr"; version="1.0.0"; sha256="0f7isjfb5almp1zypxzw3lfkygkcixmg0xdsw0zznf61r6qhbqyr"; depends=[gtools Hmisc]; }; urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; }; urlshorteneR = derive2 { name="urlshorteneR"; version="0.9.2"; sha256="1y5n1rn2c7yj5ncxfnsrj9lvaam2j3vvx8ld1vqyjay1r8flzifd"; depends=[httr jsonlite stringr]; }; @@ -12143,34 +12342,34 @@ in with self; { uroot = derive2 { name="uroot"; version="2.0-9"; sha256="0nxc8d4v9v5z3wbnj325iq2yrh0mipqgg2rn8pp2jyyq9vb1cxlv"; depends=[]; }; usdm = derive2 { name="usdm"; version="1.1-18"; sha256="1sis47fri2lrbx2ll5ps7bvycjqhncnia800izf11szgayim5lrv"; depends=[raster sp]; }; usedist = derive2 { name="usedist"; version="0.1.0"; sha256="17mldp0888ig2xc8cp1nhldj5g3srwmbx3mfcnzz21n1fz31jkmg"; depends=[]; }; - useful = derive2 { name="useful"; version="1.2.3"; sha256="016fwnjrnq44m71jmiy8cpzncja77pii2ag2ir85jdk4fzgckn7l"; depends=[dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; - userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.7.0"; sha256="14wdy74mj9rzlpmrsy3b4fda5f2sx078w1k1lgahz0yra3bypl3k"; depends=[BiasedUrn car data_tree DiagrammeR digest diptest fBasics GGally ggplot2 ggrepel ggridges GPArotation gridExtra gtable knitr lavaan lme4 MASS MBESS minpack_lm pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists viridis XML xtable]; }; + useful = derive2 { name="useful"; version="1.2.5"; sha256="05198zzlvzmmsic3g6nlxlwivpaszkzx61ximw0v4i4sahblxmp7"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; + userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.7.1"; sha256="1lkxzd5j51q57m5fqv21y6m37fgjwzjh0hhf940czhlwkk1idyld"; depends=[BiasedUrn car data_tree DiagrammeR digest diptest fBasics GGally ggplot2 ggrepel ggridges GPArotation gridExtra gtable knitr lavaan lme4 MASS MBESS minpack_lm pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists viridis XML xtable]; }; usethis = derive2 { name="usethis"; version="1.3.0"; sha256="0r61pf8qisjvrshm6jpcb76ck1v79s7lg9zwdgad4fasyyrzrcx2"; depends=[backports clipr clisymbols crayon curl desc gh git2r httr rematch2 rmarkdown rprojroot rstudioapi styler whisker]; }; usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="1.8.0"; sha256="04w7p9i08a51smgg11kh4hablic5rjmr5hndrnlg49j5h20i7w1v"; depends=[nlsr]; }; - usmap = derive2 { name="usmap"; version="0.2.1"; sha256="0ilg8fzrxpljdly8xkniirqa3lw74kfark75pv071aa4l6xkiwlg"; depends=[]; }; + usmap = derive2 { name="usmap"; version="0.3.0"; sha256="0zf3frhdg08fa5m25gln5b7xpbyjr0sbybyih0yd5hgvw0fnk4dm"; depends=[]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; - utf8 = derive2 { name="utf8"; version="1.1.3"; sha256="03s4j6059q0nly68vpk6wy3p3f5ypakw93fj35kzd82b4z1r9cs3"; depends=[]; }; + utf8 = derive2 { name="utf8"; version="1.1.4"; sha256="0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"; depends=[]; }; utf8latex = derive2 { name="utf8latex"; version="1.0.4"; sha256="12isrl056h7y7nr7wk52dnvf3frcp66qqy7si869ark2aj81f959"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.2"; sha256="0q08yc0sxbcjhsr0nkgc2pyxkd93zwlbf0jyq21cf535mj4036gq"; depends=[]; }; - utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.5"; sha256="1kllm94c23pb176nazcfgsv38aawbzdwqdhyxx1c1n1jlsls2zk6"; depends=[data_table dplyr RCurl stringdist stringr]; }; + utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; utiml = derive2 { name="utiml"; version="0.1.4"; sha256="1z93a7ldgkab6hsa9a0hzyhxsbac45sgqn7fy2jh615d2kw7pqr1"; depends=[mldr]; }; uuid = derive2 { name="uuid"; version="0.1-2"; sha256="1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"; depends=[]; }; - uwIntroStats = derive2 { name="uwIntroStats"; version="0.0.5"; sha256="0zsbznvhnxihpxbkw3z4mywc66qx9qfxa0bz6748h19c885hjw01"; depends=[Exact geepack plyr sandwich survival]; }; + vMask = derive2 { name="vMask"; version="1.0"; sha256="14zfmgidlvlmm9anjcz3wvz4crc24ysq7jj1j1078fp7px5vvr8z"; depends=[]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; vaersvax = derive2 { name="vaersvax"; version="1.0.4"; sha256="15znkwbhr624qgwlcrdhaxpdfl85ym845mr2sy8b016d3ngz7n94"; depends=[]; }; vagalumeR = derive2 { name="vagalumeR"; version="0.1.1"; sha256="1l1p63yhwqvkh8kgqii9n96vdm86jfc64nrinjp5l7jhx99sn013"; depends=[httr jsonlite plyr stringr]; }; valaddin = derive2 { name="valaddin"; version="0.1.2"; sha256="0j1c3g9gn2j0manz3jjh58cnl7b1rfwm9494xqrfqpia8948p9vq"; depends=[lazyeval purrr]; }; valection = derive2 { name="valection"; version="1.0.0"; sha256="0104zcg3cw57ksgmb321hnyv095mn3frxci9vikj1smwarpnrpzc"; depends=[testthat]; }; validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; }; - validate = derive2 { name="validate"; version="0.2.4"; sha256="0dg6jkc3g42fj0dx1m868v7p7jmxfdgihal9jmzphysyl36z8fp7"; depends=[settings yaml]; }; + validate = derive2 { name="validate"; version="0.2.5"; sha256="069r6a0l719napmrf37rwi2dvm4ql5ip3g7kba3s96b1qamh8afi"; depends=[settings yaml]; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; }; validatejsonr = derive2 { name="validatejsonr"; version="1.0.4"; sha256="1n8jf7j3hvz47z1x3gqz5yj5wxfjzz0zgzkgckdvy1nbsqf7w3cr"; depends=[Rcpp]; }; validatetools = derive2 { name="validatetools"; version="0.4.3"; sha256="1v6mmk3iq5nzzjkkj1spiqfmqq2133xg2qyy3y8h4pwwfynp4v7c"; depends=[lpSolveAPI validate]; }; valorate = derive2 { name="valorate"; version="1.0-1"; sha256="06vczszpkipsxfs7h6ld33vvxb5ci62rwg3cglwy3lcfifhbnsfi"; depends=[survival]; }; valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; - valr = derive2 { name="valr"; version="0.4.0"; sha256="1km828lif5nh15fxc3kbk3xp14gmsd6f3n0g5ml9zbdimh9n990z"; depends=[BH bindrcpp broom dplyr ggplot2 plogr Rcpp readr rlang stringr tibble]; }; + valr = derive2 { name="valr"; version="0.4.1"; sha256="0w9hgcyvmny2z1k2phnid60y8qvwbp47dy7q85ppd3j1cxyik5id"; depends=[BH bindrcpp broom dplyr ggplot2 plogr Rcpp readr rlang stringr tibble]; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; }; vanddraabe = derive2 { name="vanddraabe"; version="1.0.0"; sha256="0hnfkwrrk50a5rica3lk2d52qi77xya3aspf13g0zygbyvv7ls72"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; }; varSel = derive2 { name="varSel"; version="0.1"; sha256="0ddj3swfxzchs75kfi6h25h3c33hpapnd5kcwcijnqhlh902b1r0"; depends=[]; }; @@ -12178,11 +12377,13 @@ in with self; { varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; varbvs = derive2 { name="varbvs"; version="2.4-0"; sha256="0f6c9acrir8c8m8mg928azlp31yh49faz5s2g7cbgf5f1pxi07nl"; depends=[lattice latticeExtra Matrix Rcpp]; }; vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; }; - vardpoor = derive2 { name="vardpoor"; version="0.9.11"; sha256="0ij45lq3dgvxm2nf6n8amd4si7giajnwlzq0lia568zfisdw4k0l"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; - varhandle = derive2 { name="varhandle"; version="2.0.2"; sha256="1lbhwkkp9dyfhby6s4q3b6wy13wfqdjw3q21kq6k08rz7lsi0wny"; depends=[]; }; + vardpoor = derive2 { name="vardpoor"; version="0.10.0"; sha256="0v1l6rw8in0nr1a7g1mgfimjxjzjww174y8vxvmgirlifnnjxkc8"; depends=[data_table foreach laeken MASS plyr stringr surveyplanning]; }; + varhandle = derive2 { name="varhandle"; version="2.0.3"; sha256="11yisjgqc8fq0sj1kzgp51i926cs4yqkpfmbis5ak786wqalc6na"; depends=[]; }; variables = derive2 { name="variables"; version="1.0-0"; sha256="0i1nmrbps1snyzdwlki7sfxf2vpqghd9ap8pmy235d5r399jmpkb"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; variosig = derive2 { name="variosig"; version="0.1"; sha256="191d4f52z686s8xbx7aw9c3qjp77iri43l52n8nxjgfjl877x5m4"; depends=[geoR gstat sp]; }; + varjmcm = derive2 { name="varjmcm"; version="0.1.0"; sha256="02l0d896faakh9pdq2rzl2psmrj7l2pvacz7nk3r6552glsk7h18"; depends=[expm jmcm MASS Matrix]; }; + varrank = derive2 { name="varrank"; version="0.1"; sha256="1ynpnzfvwbwfpcv7rqlkvxmmafnjgdssr5l42rr3bklm9j1z71vm"; depends=[FNN]; }; vars = derive2 { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[lmtest MASS sandwich strucchange urca]; }; vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; @@ -12190,148 +12391,158 @@ in with self; { vcdExtra = derive2 { name="vcdExtra"; version="0.7-1"; sha256="163x9hhvhgdmrqbcig7b120lk63svy0y652scbrcb11f85zrgb0c"; depends=[ca gnm MASS vcd]; }; vcfR = derive2 { name="vcfR"; version="1.8.0"; sha256="1684lamsivwaqzvmwzhrrziwczkaqn3mhbdr86zbjdhr1jcgkz2z"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; + vcr = derive2 { name="vcr"; version="0.1.0"; sha256="1f0hjfip7k9gd7lbaqk97idan2qfns7yiw6rsxp8q7szmjyhb6ga"; depends=[base64enc crul lazyeval R6 urltools webmockr yaml]; }; vcrpart = derive2 { name="vcrpart"; version="1.0-2"; sha256="1xfvsxgyf39d2qxnm40nzkqp7q12y8nbpn9h154n876zxxfs7gh1"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; vdg = derive2 { name="vdg"; version="1.2.0"; sha256="1hi5d14nh9q784sbdk018awrawh9f1aix0wl26x7n0xb4707rcmy"; depends=[ggplot2 gridExtra proxy quantreg]; }; - vdiffr = derive2 { name="vdiffr"; version="0.2.2"; sha256="11annh6dl4xyky4c6jx0jhvwpfmqfha57666qzs225sj30xq84dc"; depends=[devtools fontquiver gdtools glue htmlwidgets purrr R6 Rcpp rlang shiny svglite testthat xml2]; }; + vdiffr = derive2 { name="vdiffr"; version="0.2.3"; sha256="0rsznvbymlwdjl9qdll98x8cqkf8rdi20c5sw4w547sfxr664yl0"; depends=[devtools fontquiver gdtools glue htmlwidgets purrr R6 Rcpp rlang shiny svglite testthat xml2]; }; vdmR = derive2 { name="vdmR"; version="0.2.5"; sha256="1v96khvg3k33kg3aavanl8g05n5mjkbqsbf8c4lya73f3rs4sfgb"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr Rdpack rgdal rgeos rjson Rook sp]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.2.1"; sha256="086af6swjpbkd140yvb76affy5gn4p9xm41m3akm8axc3qk0hybg"; depends=[]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.5-1"; sha256="0pynr02d1xngda6c3va8fc4nxpgfkawhzcnz1ws4dnarp9b1w90r"; depends=[cluster lattice MASS mgcv permute]; }; + vegan = derive2 { name="vegan"; version="2.5-2"; sha256="13pyqvlpz64qibi8k5d109v7q09j06mbv6ndix3n4cn21mjx391c"; depends=[cluster lattice MASS mgcv permute]; }; vegan3d = derive2 { name="vegan3d"; version="1.1-1"; sha256="1jd9m2immkhgb1zr39gsgl746y7qpi5fhj8awmqq5lyr5j6jp6jh"; depends=[cluster rgl scatterplot3d vegan]; }; - vegclust = derive2 { name="vegclust"; version="1.7.1"; sha256="1k1dcw424s19f8ngsksvdmsayahl1hkxd9v2irf8ljpp688l8idi"; depends=[Rcpp sp vegan]; }; + vegclust = derive2 { name="vegclust"; version="1.7.4"; sha256="1fz3p5jpqy99r601dj9fahgv32vw0v54jlrq48wn81rzg2wwfmk7"; depends=[Kendall Rcpp sp vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.1"; sha256="0w4dk7qcl89w04qgnlna5lk5hxnyrvwmgjjxmnvb6r5dspq7qyad"; depends=[foreign httr jsonlite XML]; }; vegetarian = derive2 { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; - vegtable = derive2 { name="vegtable"; version="0.1.1"; sha256="0vpkfagkvwkij4kn4zxxiddbnw1qxv6dajjlis4byl766606xi1v"; depends=[foreign plotKML qdapRegex sp taxlist vegdata]; }; - vein = derive2 { name="vein"; version="0.3.9"; sha256="1h5j7fa0c7q1p3fj3pr98f4y1dc4n2r6gm0a8rddv4m8nf2cjgq7"; depends=[data_table sf sp units]; }; + vegtable = derive2 { name="vegtable"; version="0.1.3"; sha256="1pjbqhc09bmyjxx21z01dysbvwbx7v0mxm9xbcmfxdmr10adhian"; depends=[foreign plotKML qdapRegex sp stringi taxlist vegdata]; }; + vein = derive2 { name="vein"; version="0.3.35"; sha256="0jmsr7vw2p7r6z3s1kqkrnkd5f0w6mjzv2ln3s446c1z3bmvv5zv"; depends=[data_table eixport sf sp units]; }; velociraptr = derive2 { name="velociraptr"; version="1.0"; sha256="1n7q08i37qbbh5cjq6jb4gmpzzip3wx2wx8xx5wpkln8n3nyiqki"; depends=[RCurl rgdal]; }; velox = derive2 { name="velox"; version="0.2.0"; sha256="1jrarfsfflvpc0dqh5gnw92fk8zic222n7pr7hd0lhr5d389k6d0"; depends=[BH raster Rcpp rgdal rgeos sf sp]; }; vembedr = derive2 { name="vembedr"; version="0.1.3"; sha256="0zg6j0g9l7j36ifwabhxrin5z0dics66bqkc7x6rqijmizk1xpba"; depends=[htmltools httr magrittr stringr]; }; - venn = derive2 { name="venn"; version="1.5"; sha256="0mb8864kmn98184q007jnn7cydh02sx8bh1mhsskycmi70c8w8ai"; depends=[]; }; + venn = derive2 { name="venn"; version="1.6"; sha256="0ipfysb9kjq07rvf6szy1cci4waw905bavk9bs60aii5858k9rcs"; depends=[]; }; vennLasso = derive2 { name="vennLasso"; version="0.1.2"; sha256="1lma34msdl8ik0375bh4adbfgvcy0crv29gpsk7p6x75464jsp9y"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; }; venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; - vertexenum = derive2 { name="vertexenum"; version="1.0.1"; sha256="060sfa22m35d1hqxqngxhy7bwjihf6b4sqa1kg5r0cqvdw9zg51d"; depends=[numbers]; }; + vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; - vetr = derive2 { name="vetr"; version="0.2.4"; sha256="16v31qkbn6nbng00465z6990n2hwzrv5i4m3ifv3ysfq28jnd28a"; depends=[]; }; + vetr = derive2 { name="vetr"; version="0.2.5"; sha256="164zs1bxhkjzicip95lhyb2yi4hgg08zm6i18z6g4bjgn1ban1id"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; vhica = derive2 { name="vhica"; version="0.2.4"; sha256="0km49lrzn9rm3wxadwxc290dvx3bsblbmna7f9lnkq6g1z5jdqwg"; depends=[]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; + vimp = derive2 { name="vimp"; version="1.0.0"; sha256="0q92zgs52nxrxswnvascbpfvg51hvy08cwjy2vjjvzjydicsfnxh"; depends=[SuperLearner]; }; + vinereg = derive2 { name="vinereg"; version="0.3.0"; sha256="05vd9ilnx9cswsa21bnw6p5q44yyc7adm4xh966dnsdrsdj6dd7s"; depends=[cctools furrr future kde1d rvinecopulib]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinmplot = derive2 { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; vioplot = derive2 { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; + vip = derive2 { name="vip"; version="0.1.0"; sha256="1blyyy17f4gxhbw7jwwf0xrq4ha142k356dfhasnvk4jqrpajcxc"; depends=[dplyr ggplot2 gridExtra magrittr pdp plyr tibble tidyr]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; viridis = derive2 { name="viridis"; version="0.5.1"; sha256="060rf1jn29dq53y3nhb0hykvcap6rqsk04rq544ypiiqb18ngwnx"; depends=[ggplot2 gridExtra viridisLite]; }; viridisLite = derive2 { name="viridisLite"; version="0.3.0"; sha256="1by2l05f0yabwvv64lhnv7bbhx0w683s3wr9j2xda920ghpa23kq"; depends=[]; }; virtualspecies = derive2 { name="virtualspecies"; version="1.4-2"; sha256="19qw8vqf08x6fgm8w159qabpgr2wv2cxishpj6888ihcaa9ykp8f"; depends=[ade4 dismo raster rworldmap]; }; virustotal = derive2 { name="virustotal"; version="0.2.1"; sha256="0lky75al8zcvmfgx7a2s3bij8ya4avdsnv046lk7564zfd8rbymw"; depends=[httr plyr]; }; - visNetwork = derive2 { name="visNetwork"; version="2.0.3"; sha256="0bs6war8m6vnzyhmzfmry5sfc5v1crq8i8r8nn70shf19k7pabmw"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; - visdat = derive2 { name="visdat"; version="0.1.0"; sha256="1r009jlg3wwg06j5066c09567q24986c74f0cd68kcbmihaxngbx"; depends=[dplyr ggplot2 magrittr purrr tidyr]; }; + visNetwork = derive2 { name="visNetwork"; version="2.0.4"; sha256="05gdsma70zvkgly9qscbwy98x8zrqgsk93czb37jp0as365l00q5"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; + visdat = derive2 { name="visdat"; version="0.5.1"; sha256="1vnfwldzq5ddqk8prj4cg0dmkbjhpchdkb6v8kicd876dv8vxy2q"; depends=[dplyr ggplot2 magrittr plotly purrr readr rlang tibble tidyr]; }; visreg = derive2 { name="visreg"; version="2.5-0"; sha256="0n19k6rsmpqga6r8lyhjviqs3nw881dhr211621m2cl7knqhhi4y"; depends=[lattice]; }; vistime = derive2 { name="vistime"; version="0.5.0"; sha256="1h7dm66m0qx3hmfx1hlv5na65swdhdykyg1fsqzgnjl6p98cg81j"; depends=[plotly RColorBrewer]; }; - visualFields = derive2 { name="visualFields"; version="0.4.3"; sha256="0ws3cz71hhhrf4xkdb644li04d31wf51xb2sq789bl2lf50q6a1a"; depends=[flip gridBase Hmisc matrixStats]; }; + visualFields = derive2 { name="visualFields"; version="0.5.4"; sha256="19fb1qq4kyhln21dmf7wm6kqf7g94ls7nsaspl2q9d3rlmcgz5h3"; depends=[deldir flip gtools Hmisc matrixStats spatstat]; }; visualize = derive2 { name="visualize"; version="4.3.0"; sha256="1s49sx828f25d4n93mn28xdbc81zflk2sr3h8ffs2mkjr888qd8y"; depends=[]; }; visvow = derive2 { name="visvow"; version="0.1.0"; sha256="0nb849m6dqfanqlaqcargw0rlf4ch9v09zmf0zqmxkwcil0w0dka"; depends=[Cairo DT ggplot2 plot3D plyr pracma psych Rdpack readxl shiny shinyBS svglite WriteXLS]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; - vitality = derive2 { name="vitality"; version="1.2"; sha256="0vjbf39i7qm3857gyidg2j5hfimpydav1sx2d07n12b8q1cs8k4p"; depends=[]; }; + vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; vkR = derive2 { name="vkR"; version="0.1"; sha256="0rb66am3y009wli8ykl58i02kzm6cdqz5v5d4vvzlbngz8crdkyy"; depends=[httr jsonlite XML]; }; vlad = derive2 { name="vlad"; version="0.1.0"; sha256="0gdp9488ir6zsnwaf0zb1n4qivafccqky7i867vjc2zb9nnji6a9"; depends=[Rcpp RcppArmadillo]; }; vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; }; vmsbase = derive2 { name="vmsbase"; version="2.1.3"; sha256="1y4r1f6miwxx3q8pajyh202wvjz08w6291jvpv723qyxa6z1r69a"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets gWidgetsRGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; vocaldia = derive2 { name="vocaldia"; version="0.8.2"; sha256="15314sq2gbi1z47ppvy8y3ljjk12jq4k5a1dfyi56h2lpzrc76ny"; depends=[]; }; - vortexR = derive2 { name="vortexR"; version="1.1.4"; sha256="1zjrywjh8nrzaqmrl2yym481j0y40126xz8lh52vc8pk041p3xdb"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; }; + vortexR = derive2 { name="vortexR"; version="1.1.5"; sha256="03bzjyscqf0npvdwm0741n1sg2kbpqlqkpxj843rmac6blkxy7cn"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; }; vortexRdata = derive2 { name="vortexRdata"; version="1.0.3"; sha256="1pq910xaqk6d5amg8hj7xagb5wn2ahfrmqairf3vhwqx55lhjbg1"; depends=[]; }; + vosonSML = derive2 { name="vosonSML"; version="0.23.4"; sha256="0y2jyrkld02ksn2ipkkxzc724dhbqbja120gg7sm67v6x444pma7"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; }; vote = derive2 { name="vote"; version="1.1-0"; sha256="1kxbv4062g4x9vn4gh74c6zwdshysw5n7vx9qljhq2wrdnqzjpyg"; depends=[formattable knitr]; }; voteogram = derive2 { name="voteogram"; version="0.2.0"; sha256="0m4j7iz7mc6z536vk0kmqfd8ank87ingv5vnjl7mn62r53c5fbsf"; depends=[dplyr ggplot2 jsonlite scales]; }; - votesys = derive2 { name="votesys"; version="0.1.0"; sha256="1y86411khvn8yz0q75ky9ic7n8a11jckmpamj56h9cl5yh1rbm9w"; depends=[data_table]; }; + votesys = derive2 { name="votesys"; version="0.1.1"; sha256="1z7cx3rj3bfrkb6jkmf1m1wad5ff46zrab5vhk69wf3jbwd9h920"; depends=[data_table gtools Matrix]; }; vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; }; vowels = derive2 { name="vowels"; version="1.2-2"; sha256="0xhfn3avx9h6kg3jwd47n2x7w8q8c9h13wsxd74hhbbn2gkjrs84"; depends=[]; }; vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; }; - voxel = derive2 { name="voxel"; version="1.3.2"; sha256="0sixcan3v5nczmrrxn56rw5dqjq8xx7z3cp18j23jq26mvq4nm34"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti]; }; + voxel = derive2 { name="voxel"; version="1.3.5"; sha256="1xlym8xc22dq67h0lylrr16z7b4zdidpgrkvbs7n9fnkh6vijw2j"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti purrr]; }; vpc = derive2 { name="vpc"; version="1.0.1"; sha256="0zxiakls7wi0278f6v74xdcaw500am8gfs8lp7cciaxnw2clvsbv"; depends=[classInt dplyr ggplot2 MASS readr reshape2 survival]; }; - vqtl = derive2 { name="vqtl"; version="2.0.0"; sha256="193jd5wcz8s3n2571jn5f6vz7kgf6l8a6w9anzd53pgc2644w3f9"; depends=[dglm doParallel dplyr evd foreach ggplot2 gtools hglm iterators knitr lazyeval purrr qtl stringr testthat tidyr]; }; + vqtl = derive2 { name="vqtl"; version="2.0.4"; sha256="1jp7h2afnfgn8i65qg64lwbjw56s37w8fgwfajcgxn2mwb5z0jcb"; depends=[dglm doParallel dplyr evd foreach ggplot2 gtools iterators knitr lazyeval purrr qtl stringr testthat tidyr]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; + vsgoftest = derive2 { name="vsgoftest"; version="0.3-2"; sha256="020kghcfv8h0i7fzq3p2grhhbwvqmc9ya9r7lc1kiqg1bfgljg91"; depends=[fitdistrplus Rcpp]; }; vstsr = derive2 { name="vstsr"; version="1.0.0"; sha256="0flsw5yw1vmj5x866klxmjqz5aimkvjiwl1zdciz63p9zffmb4gz"; depends=[httr jsonlite magrittr R6 RCurl xml2]; }; - vtreat = derive2 { name="vtreat"; version="1.0.3"; sha256="04kicd7jxvcnvd0n9ssxv3jsi075wass30l3jg0ikdr3kc899vfs"; depends=[]; }; + vtreat = derive2 { name="vtreat"; version="1.2.2"; sha256="06r8ib4l3cyxrx8ykkvjj7ycrjsrv5d5y0lm6zj12lc9l298zj49"; depends=[wrapr]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; wCorr = derive2 { name="wCorr"; version="1.9.1"; sha256="1n4qd11bh0aq80fsw68vfky7nnvgkk6irsfjrknkf9bjvwvihlak"; depends=[minqa mnormt Rcpp RcppArmadillo]; }; + wISAM = derive2 { name="wISAM"; version="0.2.8"; sha256="0c5ic98ihpzkycsj9wg0127civm4w1rmkkw6zsjp8sfn20cl8a8z"; depends=[MASS]; }; wNNSel = derive2 { name="wNNSel"; version="0.1"; sha256="19j2yz6lvkxpmjr0vv6pjc7j1c02y0hb3gay5sy1y0xk706aggb5"; depends=[]; }; wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; }; wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; }; - wTO = derive2 { name="wTO"; version="1.5"; sha256="0zz89r60fq47gdd08p29xxsx22097ynz1zrc4zmkv5z99wsmsssp"; depends=[data_table igraph magrittr plyr reshape2 som visNetwork]; }; + wTO = derive2 { name="wTO"; version="1.6.1"; sha256="0iw5vg3qpjgyx6n2p10a2ma9dpcm1hchvrm2brh1a0j1xmjwpsrl"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; }; waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; }; waffect = derive2 { name="waffect"; version="1.2"; sha256="0r5dvm0ggyxyv81hxdr1an658wkqkhqq2xaqzqpnh4sh4wbak35a"; depends=[Rcpp]; }; waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; }; - wakefield = derive2 { name="wakefield"; version="0.3.0"; sha256="1f74503ar4hw48j13npgzybvwc631xndldidqnyfk72wb11fzi4z"; depends=[chron dplyr ggplot2 stringi]; }; + wakefield = derive2 { name="wakefield"; version="0.3.3"; sha256="05z9a6g1cdavalp50wss7klnlcdbv3y1jvz1v8ry1x2bziy216y2"; depends=[chron dplyr ggplot2 stringi]; }; + walkalytics = derive2 { name="walkalytics"; version="0.1.0"; sha256="1kl6kwwnl67d45akna01xp389wjxsxlc84l0bcpadbipsqyb3kd1"; depends=[base64enc dplyr httr purrr sp stringr tibble]; }; walker = derive2 { name="walker"; version="0.2.1"; sha256="1q99nny7mdh7wc3yj4dz0s2454aqyxjcsp5hpjrha14h4p3fcirf"; depends=[bayesplot BH dplyr ggplot2 KFAS Rcpp RcppArmadillo RcppEigen rstan StanHeaders]; }; walkr = derive2 { name="walkr"; version="0.3.4"; sha256="01278hfa9mppwqmr54826gb65pswhqbh7ai8ij6m4ncc0fk6pvvd"; depends=[ggplot2 hitandrun limSolve MASS Rcpp RcppEigen shinystan]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; - wallace = derive2 { name="wallace"; version="1.0.4"; sha256="1adc070z94gwpfv4b1r0m2ylw9nzigzf412zlllbzlmn3pz42076"; depends=[dismo dplyr DT ENMeval leaflet leaflet_extras magrittr maptools raster RColorBrewer rgdal rgeos shiny shinyjs shinythemes spocc spThin]; }; + wallace = derive2 { name="wallace"; version="1.0.5"; sha256="1c3ghc5prkw44sq93klj1cfgllsz3830y78i4b1y6r23bj2z9520"; depends=[dismo dplyr DT ENMeval leaflet leaflet_extras magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs shinythemes spocc spThin testthat XML]; }; wally = derive2 { name="wally"; version="1.0.9"; sha256="1g6dywny8s8fpdnfvrlbzsp9d9dhxdxrm1j4dd3b9r6rpiajf964"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; - walrus = derive2 { name="walrus"; version="1.0.1"; sha256="032s2k122z5cqkcjvh9gva4vvmj5prn6z3rs8j5y16d98kgambpy"; depends=[ggplot2 jmvcore R6 WRS2]; }; + walrus = derive2 { name="walrus"; version="1.0.3"; sha256="1nk2glcvy4hyksl5ipq2mz8jy4fss90hx6cq98m3w96kzjni6jjj"; depends=[ggplot2 jmvcore R6 WRS2]; }; wand = derive2 { name="wand"; version="0.2.0"; sha256="1p2r96nyr36jv418xi4j2ldarymb4xmpis6d2iz7mq9755kb4fnh"; depends=[dplyr purrr rappdirs Rcpp stringi tibble tidyr]; }; - warbleR = derive2 { name="warbleR"; version="1.1.12"; sha256="1fb1pni00gphhwxzq75y5lbjqpyapc5vpqbbi2vq841dpn2jkcwm"; depends=[bitops doParallel dtw fftw foreach iterators jpeg maps monitoR NatureSounds pbapply pbmcapply pracma proxy RCurl rjson seewave signal Sim_DiffProc tuneR]; }; + warbleR = derive2 { name="warbleR"; version="1.1.14"; sha256="0wr0m950y404chh8gipx1v5mvldypm0iwyiqn4ypz5143fzlhwih"; depends=[bitops dtw fftw iterators jpeg maps monitoR NatureSounds pbapply pracma RCurl rjson seewave Sim_DiffProc tuneR]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.2"; sha256="01cnlhymh3qg9c7fda8s6lvm4j2vklmb72dfk17sn4p0kkikf9m8"; depends=[]; }; wasim = derive2 { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; }; - water = derive2 { name="water"; version="0.7"; sha256="1rdwmld4xxaxx003cjj67jylgg507r2jjqvncbp539q7c2z5b201"; depends=[raster rgdal sp]; }; + water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; }; waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterfall = derive2 { name="waterfall"; version="1.0.2"; sha256="0jy6l9mx0dixwnkychdl18sf4xh73pm0qd1jyxp9rlnv1vcragjp"; depends=[lattice]; }; waterfalls = derive2 { name="waterfalls"; version="0.1.2"; sha256="01gby1mlhrwcalizpywxcakkx2zifswb0188nrl6z9dkkd1866lm"; depends=[ggplot2]; }; waveband = derive2 { name="waveband"; version="4.7"; sha256="0b57g7jwvqgqjzd7x1pd4nqpx22rmiskvf8wjwrgplqzx4daxny2"; depends=[wavethresh]; }; - waved = derive2 { name="waved"; version="1.1-2"; sha256="17pr9qhz0dbbcr78vwm964d9zd7yrfrqvadr1lwf756bsrscmlg3"; depends=[]; }; + waved = derive2 { name="waved"; version="1.2"; sha256="0zv4rgazk9s295pggzfa7sc062zv68dgds1ngxcz7vg1fx0qkgxg"; depends=[]; }; wavefunction = derive2 { name="wavefunction"; version="1.0.0"; sha256="1g0g9i0s93lcpcx7icqn15bvkmd79slkgimspvvwp2bxdsc5nnf2"; depends=[]; }; wavelets = derive2 { name="wavelets"; version="0.3-0"; sha256="141s7z7wxl5plxp7xp7wczswlcvb18a4h3n881l9qc4ny9p7gfpa"; depends=[]; }; - wavemulcor = derive2 { name="wavemulcor"; version="2.1.0"; sha256="0z2vyb3rsxxh7k9fgaxi0xa6rwrw3pka1h4xkfrb9xydsacwbvx2"; depends=[waveslim]; }; + wavemulcor = derive2 { name="wavemulcor"; version="2.2.1"; sha256="0150ybf8lwxc93zhcrsmh4gp6wbib3s14j95jlg6dlsckixyi3iw"; depends=[waveslim]; }; waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; waveslim = derive2 { name="waveslim"; version="1.7.5"; sha256="0lqslkihgrd7rbihqhhk57m9vkbnfsznkvk8430cvbcsn7vridii"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; wbs = derive2 { name="wbs"; version="1.3"; sha256="1fdf3dj23n63nfnzafq88sxqvi15cbrzsvc8wrljw1raq5z012yv"; depends=[]; }; wbstats = derive2 { name="wbstats"; version="0.2"; sha256="0rfc9c6892jq7y17dwp6vsn62ggnac964xndmxq3mip6k2pk8yi0"; depends=[httr jsonlite tidyr]; }; wbsts = derive2 { name="wbsts"; version="2.0"; sha256="12k68nsrrxglrm9ik53rm8160xvjlsgzi7v4wp78jhmh2slmyxw3"; depends=[mvtnorm Rcpp wmtsa]; }; - wdman = derive2 { name="wdman"; version="0.2.2"; sha256="1a6zav82w0krk0ncm5b79ahy2hc0xakg9i1m2143ih5p6zvcm5m0"; depends=[assertthat binman semver subprocess yaml]; }; + wdm = derive2 { name="wdm"; version="0.1.1"; sha256="0mr901l2378dyygdhc5agx93lm46a44fs3kr3ax2wnv1cdhmc379"; depends=[Rcpp]; }; + weathercan = derive2 { name="weathercan"; version="0.2.7"; sha256="09465l1gy349vgnpasxazp3i5x82hld8k06ba6556k4r9jypx08v"; depends=[dplyr httr lubridate purrr stringi tidyr xml2]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; }; webTRISr = derive2 { name="webTRISr"; version="0.1.0"; sha256="19xal5zg9mg25vzvkz55zm6gkd8b0y3sw3zbbrxn73a1jg8x5v0l"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr stringr]; }; webchem = derive2 { name="webchem"; version="0.4.0"; sha256="032bsfnkn7s33y42fyf8yradsh8jhms4ryjkh0r76hqnx3j00ph0"; depends=[httr jsonlite RCurl rvest stringr xml2]; }; webdriver = derive2 { name="webdriver"; version="1.0.5"; sha256="0l3nz7gf62jlkvkn5sfxfvn0prxz3ds7nlpfb1yhnmdljhbzrgzf"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webglobe = derive2 { name="webglobe"; version="1.0.2"; sha256="1277d6fkgrgixlhikfwf0r6z8g5b7mah905xi219qsfycxmifgn9"; depends=[geojsonio httpuv jsonlite]; }; - webmockr = derive2 { name="webmockr"; version="0.2.0"; sha256="1zzfam380gy1d3k909ixbk61gmmv0w1x17qz8avrrnjlvqbp9gmn"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; }; + webmockr = derive2 { name="webmockr"; version="0.2.6"; sha256="00akqj7lw3hvwxllnn48zpq5wk70bbr4ghzilh6064jwkk365c8v"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; }; webp = derive2 { name="webp"; version="0.4"; sha256="0jsyjynrsrqpbg93rn48xrjclkvwmz2c2lhcfli5djny122ymh6r"; depends=[]; }; + webr = derive2 { name="webr"; version="0.1.0"; sha256="0fjbk933034cgmqd41cw7q5xcvrwgylcic6lxav9jv3b2sspzw06"; depends=[ggplot2 moonBook stringr]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; websearchr = derive2 { name="websearchr"; version="0.0.2"; sha256="1yf8ch86khg5syppcxs94mxgc3i5623qyhzh174nssw1wzyqb9ba"; depends=[]; }; webshot = derive2 { name="webshot"; version="0.5.0"; sha256="07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh"; depends=[jsonlite magrittr processx withr]; }; webuse = derive2 { name="webuse"; version="0.1.2"; sha256="0ks3pb9ir778j9x4l0s4ly2xa1jc9syddqm65wkck52q3lrarg3l"; depends=[haven]; }; webutils = derive2 { name="webutils"; version="0.6"; sha256="1basl7q2m8y9nw5ksi1kdz6an9pybvsmdd4snrm7a37041xymnps"; depends=[curl jsonlite]; }; - webvis = derive2 { name="webvis"; version="0.0.2"; sha256="1cdn9jrpg2sbx4dsj0xf7m0daqr7fqiw3xy1lg0i0qn9cpvi348f"; depends=[]; }; wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; - weco = derive2 { name="weco"; version="1.1"; sha256="1xnhbm499vypn8iwm33h1hv0wih1lj3bglm1rlgxaypbwj1acg53"; depends=[]; }; + weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; }; + weibullness = derive2 { name="weibullness"; version="1.18.6"; sha256="046fs6b5yb6ckddcb9vplc5478c7xprnafsj4rvzb1gmcpcrqqck"; depends=[]; }; weightTAPSPACK = derive2 { name="weightTAPSPACK"; version="0.1"; sha256="0kpfw477qka5qrc6sh73had38xbrwrqp1yv0dj2qiihkiyrp67ks"; depends=[HotDeckImputation mice plyr survey]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.1"; sha256="118hzwaarcb8pk2zz83m6zzzndlpbbzb7gz87vc7zggpa998k1gr"; depends=[mvtnorm rootSolve]; }; weightr = derive2 { name="weightr"; version="1.1.2"; sha256="13wy7ygx7khbmymg2r0rr6mrl4lbapf5bnnq1rq8izl38sjk7csx"; depends=[]; }; - weights = derive2 { name="weights"; version="0.85"; sha256="0nsvgx2yn2ynrkqvvy3fxjsi6aw8w3zknm80fyjrih2zmxc7v61f"; depends=[gdata Hmisc mice]; }; + weights = derive2 { name="weights"; version="0.90"; sha256="0wgh2nb2y0xr20y6ig9mric34zhwpndb71ddpbrf5sjqg3hijj96"; depends=[gdata Hmisc mice]; }; weirs = derive2 { name="weirs"; version="0.25"; sha256="17a0ppi7ghikrwn39zvhg2cvhmnr3w0qi7r9lj22x65ii9nzadd7"; depends=[]; }; - welchADF = derive2 { name="welchADF"; version="0.2"; sha256="1gyii50khjd1pamv3v19ajx6b2vw2aspbzmqiqrqmvcl46nha24y"; depends=[lme4]; }; + welchADF = derive2 { name="welchADF"; version="0.3"; sha256="0k2di5fwh5jv87mw4bjnhbk2rmhf2v2f5ksjr5dgnyhnawwxqq97"; depends=[lme4]; }; wellknown = derive2 { name="wellknown"; version="0.5.0"; sha256="1y3hi5ajqaxx3s40cx24ayfcd3c6d1ydlhsm0gg2fxgmidm6bhwy"; depends=[jsonlite V8]; }; - wesanderson = derive2 { name="wesanderson"; version="0.3.2"; sha256="17acf9ydi2sw7q887ni9ly12mdmip66ix6gdkh68rncj8sx3csrd"; depends=[]; }; + wesanderson = derive2 { name="wesanderson"; version="0.3.6"; sha256="09mr6p2jmqdjq27cz974w5hyxgn929zp9z3inhxqmmh1582fmdi2"; depends=[]; }; + wevid = derive2 { name="wevid"; version="0.4.2"; sha256="0d771r3xrd7nwnpwnhzqaqybimjg0gaikqqagbf483x423ijfdny"; depends=[ggplot2 pROC reshape2 zoo]; }; wfe = derive2 { name="wfe"; version="1.6"; sha256="0y8f042hzlqwgsr63rl2apl7hkw9bs69a287dynvz9w078am61ch"; depends=[arm MASS Matrix]; }; wfg = derive2 { name="wfg"; version="0.1"; sha256="1r6wb8v42mpapjfhmkmghm9fq21c3s4zmdxy8nlh31nsja71c37d"; depends=[igraph]; }; wfindr = derive2 { name="wfindr"; version="0.1.0"; sha256="0m5xj50hqdjj4lpbgx1kp3my4njr0nz09hd63rf4qf1ls8r7zil9"; depends=[dplyr magrittr]; }; wgaim = derive2 { name="wgaim"; version="1.4-11"; sha256="1jjyp100dcjjczp61xlvhmy48ynniqcys535vzbgswhr7fvijymg"; depends=[lattice qtl]; }; wgeesel = derive2 { name="wgeesel"; version="1.5"; sha256="0lybvsq5168cjybzv2dbyx2z8aakcx7i7ivm8zc90haiispm9n5x"; depends=[bindata CRTgeeDR geepack MASS PoisNor]; }; - wgsea = derive2 { name="wgsea"; version="1.8"; sha256="1114wik011sm2n12bwm2bhqvdxagbhbscif45k4pgxdkahy2abpi"; depends=[snpStats]; }; wheatmap = derive2 { name="wheatmap"; version="0.1.0"; sha256="1c1xvzy194vw3idkwkqp9kyrfldzczj30cl15jw1bbnw87zcwdzy"; depends=[colorspace RColorBrewer]; }; whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whisker = derive2 { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; }; @@ -12344,7 +12555,7 @@ in with self; { widgetframe = derive2 { name="widgetframe"; version="0.3.1"; sha256="0j0d73m72nzfc1wyrgsqr99ldx72adis6pd57mpim55hz0n9l224"; depends=[htmltools htmlwidgets magrittr purrr]; }; widyr = derive2 { name="widyr"; version="0.1.1"; sha256="14r1qiq4i7lmn3i76aa0d9wcjw1jclm1jf371j25s92w8z36mdln"; depends=[broom dplyr Matrix purrr reshape2 tidyr tidytext]; }; wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; - wikilake = derive2 { name="wikilake"; version="0.3"; sha256="1y4vinm8gxyj6x36nb4xzhx1yf96x1nwlzzhvj4g36rbcix7dn6q"; depends=[maps rvest selectr sp stringi stringr WikipediR xml2]; }; + wikilake = derive2 { name="wikilake"; version="0.4"; sha256="0pm0brzkf2k6aknwl4b3fba5ly7mhah8qfb0h94fckiaqbnpyx9v"; depends=[maps rvest selectr sp stringi stringr units WikipediR xml2]; }; wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.14"; sha256="00i38py9n4l0iqkn3257a3jbiwh3hrmx1p9x6rfh9sgfcch8yyj5"; depends=[hellno httr jsonlite RColorBrewer rvest stringr xml2]; }; wikitaxa = derive2 { name="wikitaxa"; version="0.2.0"; sha256="06ccb1ix5lsz3jgr3aq2ywq9bdnz020sa5dzlq1ayw95gdqj6icl"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; wildcard = derive2 { name="wildcard"; version="1.1.0"; sha256="0qkzab84z95g5f4fv3v4wisccgd7k9m3210pz4nvm1x8rfaqfjf1"; depends=[magrittr stringi]; }; @@ -12355,20 +12566,19 @@ in with self; { windfarmGA = derive2 { name="windfarmGA"; version="1.2.1"; sha256="1v4brwi92a2kchak43z0vxjq11373amh190fnmpmnpz58zbls448"; depends=[calibrate data_table doParallel dplyr foreach geoR ggplot2 googleVis gstat gtools leaflet magrittr maptools RandomFields raster RColorBrewer rgdal rgeos rgl RgoogleMaps sp spatstat]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; wiod = derive2 { name="wiod"; version="0.3.0"; sha256="1f151xmc6bm5d28w5123nm0hv7j1v8hay4jk5fk8pwn6yljl1pah"; depends=[decompr gvc]; }; - wiqid = derive2 { name="wiqid"; version="0.1.3"; sha256="06six8w77lf9rc49hnr42xgn2jvhb84wvqgi08ns22yn4z2iz9pz"; depends=[coda HDInterval MASS truncnorm]; }; + wiqid = derive2 { name="wiqid"; version="0.1.5"; sha256="02ssj0f12if3bic614bp9klzcag121rbqw4g0awvcpk9jql8k5dr"; depends=[coda HDInterval MASS truncnorm]; }; withr = derive2 { name="withr"; version="2.1.2"; sha256="11j6zykklxnvp4xqsr6a2xib665i38m3khdspp887nwagmvnydj1"; depends=[]; }; wkb = derive2 { name="wkb"; version="0.3-0"; sha256="0s7libkg27jdmcw5qmk5j0cmz3nqq7ny4q8gy4vhbgsgj4gbbdn9"; depends=[sp]; }; wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; - wle = derive2 { name="wle"; version="0.9-91"; sha256="18gqwrrw618f1xx93n0lk95gpi3lxvfkr6fmlb82v2wiibb7k7ak"; depends=[circular]; }; wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; wmtsa = derive2 { name="wmtsa"; version="2.0-3"; sha256="1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6"; depends=[ifultools MASS splus2R]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.0"; sha256="0hvim7b9zn6h6w6m6hgil919nkzkn8676x8b2f3lbmm8m7dwm3lq"; depends=[lamW MASS smoothmest]; }; - wnl = derive2 { name="wnl"; version="0.4.0"; sha256="02axa2xfbsvqiil240ywkj3r4yw5sqzk9mai1nccrvcx9fz8qlgc"; depends=[numDeriv]; }; + wnl = derive2 { name="wnl"; version="0.4.1"; sha256="0gr0jf549nmavlzra6b1jg9306chl2l5qivizn5xkkcf8hmq5rm6"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.2.5"; sha256="0pvw36jzx90z7ah4f7cyf95csdn5x7n9rh3ddsppa61y1dmjsn5k"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.5"; sha256="04pw32vng31v1n4r1g1fisvv8cacxmcx7m65vw4a2byamp2d25yq"; depends=[]; }; woeR = derive2 { name="woeR"; version="0.1.3"; sha256="15bdhgjq39svzaqzmfykyaq4r543lq15jf0sz8m9bwjv2c6vlx5l"; depends=[dplyr]; }; - womblR = derive2 { name="womblR"; version="1.0.2"; sha256="0cnggwi47pmyjqz78vcvdzv3kpss6v4h404w2d7dii0zfqjr7bpk"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; + womblR = derive2 { name="womblR"; version="1.0.3"; sha256="0g8r98lfycvsaii3zczr55pah5ffqrpinbrax41yp62w6hzgkq9b"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; wooldridge = derive2 { name="wooldridge"; version="1.3.0"; sha256="029vdiglwkr7ilr7jvzarvphcc71n1majn6bh427b4qq7n01a7wb"; depends=[]; }; word_alignment = derive2 { name="word.alignment"; version="1.0.9"; sha256="02dy4a9agfb99rjbqxy35nf11bpxyjcq15bnyzjkbvcy0ppfgz0l"; depends=[data_table openxlsx quanteda]; }; wordbankr = derive2 { name="wordbankr"; version="0.3.0"; sha256="0aa1gz3fg7h9wnk93ialwj0wjyk8wxani8galwkrms4fp7d5lmf4"; depends=[assertthat DBI dbplyr dplyr purrr rlang RMySQL robustbase stringr tidyr]; }; @@ -12377,10 +12587,11 @@ in with self; { wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; }; wordnet = derive2 { name="wordnet"; version="0.1-14"; sha256="12a21zlc7h973gi1632gngbk8b09vhp3sldh1mh9b5n6h18ga25p"; depends=[rJava]; }; wordspace = derive2 { name="wordspace"; version="0.2-0"; sha256="0rrnbimf68ax1qxsyn7g0kd76abijzxg5i11h93l0fnzi2g2a9xn"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; + workflowr = derive2 { name="workflowr"; version="1.1.0"; sha256="0vpnrldn798g3hcf1i30l5306259idbn5h3s23hjx3vxqjznss7f"; depends=[callr getPass git2r glue knitr R_utils rmarkdown rprojroot rstudioapi stringr whisker yaml]; }; worldmet = derive2 { name="worldmet"; version="0.8.4"; sha256="15crnmlcj1yi9rm35n8f34jprms24r2xwx550zz627bdvq4vmam4"; depends=[doParallel dplyr foreach leaflet openair readr zoo]; }; - worms = derive2 { name="worms"; version="0.2.1"; sha256="0qxij56wvhlz9pgc1wp5nr3yi2r0h0r7xvlhhvsflch60gprpi1s"; depends=[httr plyr]; }; - worrms = derive2 { name="worrms"; version="0.2.0"; sha256="1mqv2j9235pqdwqnw11b0zdv763wf9wqjqpf3p6fxpmki24j7xk6"; depends=[crul data_table jsonlite tibble]; }; - wosr = derive2 { name="wosr"; version="0.1.0"; sha256="0j3srk8siiip192w6wdc2w9azbhpdxyrzgyinwmi1z58xqmi9c38"; depends=[httr jsonlite pbapply xml2]; }; + worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; + worrms = derive2 { name="worrms"; version="0.2.8"; sha256="1f25x46b7hzrjz6y8ps29cfl8qa17smxbnrghf3bwhr4qc0vf5k5"; depends=[crul data_table jsonlite tibble]; }; + wosr = derive2 { name="wosr"; version="0.1.1"; sha256="1jmq4z5myjxww2lz20i70vyvsvjxm1n9ayvxggxvzl28kwhpi5ca"; depends=[httr jsonlite pbapply xml2]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; @@ -12390,10 +12601,10 @@ in with self; { wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrangle = derive2 { name="wrangle"; version="0.4"; sha256="0d1xdcvgcv8bn20s90sn1dmzhcdz39yr1m2bkcjbvavm132p96bl"; depends=[dplyr lazyeval magrittr tidyr]; }; - wrapr = derive2 { name="wrapr"; version="1.4.0"; sha256="0kxnpvqnr9whc8f5dr0xwff23pky9hp7mvrprvqnkwk0k44zd6c5"; depends=[]; }; - wrassp = derive2 { name="wrassp"; version="0.1.6"; sha256="1f6yyw6mmwc267cd9v17k6n4fhymi0y201bm6ii56rcw86n4ix77"; depends=[]; }; + wrapr = derive2 { name="wrapr"; version="1.5.0"; sha256="1r3h4h9vd0j4pbxh72557vqhdm1b79d35ialxr5919afx0nw1sg8"; depends=[]; }; + wrassp = derive2 { name="wrassp"; version="0.1.7"; sha256="0wbgrpxp4ck8cpfnv6n5lf04ga12gn8cm3rm5jj32gcm4gvdvzjl"; depends=[]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; - writexl = derive2 { name="writexl"; version="0.2"; sha256="0hclrbn21sc0ifd2c5xfww84jf47412wzs86a73swxxjzcbrkg5k"; depends=[]; }; + writexl = derive2 { name="writexl"; version="1.0"; sha256="0r2v12dc4zqmr1agp6vbw0fc48i278018684x84psjjqfmnv14cf"; depends=[]; }; wrspathrow = derive2 { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; wrspathrowData = derive2 { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.1"; sha256="0jnb818xz841bx2i03k3hhy4hxcwpxblskg9nrc8kgbc22rxx4lz"; depends=[logging Rcpp]; }; @@ -12401,7 +12612,7 @@ in with self; { wru = derive2 { name="wru"; version="0.1-7"; sha256="1fvbl5i07f6kdwjhirjla4kc1rrmrm8blvn8aa79s87ljagg0ql9"; depends=[devtools]; }; wskm = derive2 { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; }; wsrf = derive2 { name="wsrf"; version="1.7.17"; sha256="0gmlvfcy2iqa5sqhwps3hx0hl9fir8nf5xq62f25sn8i3llw752z"; depends=[Rcpp]; }; - wtest = derive2 { name="wtest"; version="2.0"; sha256="16fprxy8lxvipzynxbbs2ras8wflc4g4p1x1439ym1xkg2vwys9a"; depends=[]; }; + wtest = derive2 { name="wtest"; version="3.1"; sha256="1rlas9jn57mcyjic9dhkqj355djldc95q07b076w847cd4pmzqvb"; depends=[]; }; wtss = derive2 { name="wtss"; version="1.0.0"; sha256="041686mnhqcljxm3ska35mslpq30ah47anvnmrgnkx5y05pwa8pj"; depends=[jsonlite lubridate RCurl roxygen2 zoo]; }; wunderscraper = derive2 { name="wunderscraper"; version="0.1.0"; sha256="1h9nhxvs673n2ivw466qm77k20541cwgmmq35iv3dcb3hvw36p0r"; depends=[httr jsonlite sf tigris]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; @@ -12420,22 +12631,24 @@ in with self; { xergm = derive2 { name="xergm"; version="1.8.2"; sha256="0rg8b0r27nzjnf0zkwfbkw96439h0b40k1l5lqi5igyr0bm7w0cc"; depends=[btergm GERGM rem tnam xergm_common]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.7"; sha256="0nfls8a1knmnjjrrw0q93qsfrrb9p3yqsm5dxp13z0780vrzxvcj"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.2"; sha256="1y7iilqdj9jv5snzylihs996hvpcj9s3yaiy7wr20m5yh1ngwkvj"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.1"; sha256="1sm51gmwgw876d6d1q8smxmfgfh6zsnykfx8qp8z6jmh0fvd89pj"; depends=[]; }; - xgboost = derive2 { name="xgboost"; version="0.6.4.1"; sha256="0n47xvsrk8f8gy2x33rf93yfpkk4ir4z06f09qhlnrnpq1dvwfzf"; depends=[data_table magrittr Matrix stringi]; }; + xfun = derive2 { name="xfun"; version="0.2"; sha256="0zl22fcw90kdvzkjyf6vbmdmn9rz3bl51522fasvmykypffyng4a"; depends=[]; }; + xgboost = derive2 { name="xgboost"; version="0.71.2"; sha256="134q69xbi93ajjlwrp838jgypjdjipmbkzmr31mvc100i9nsr14x"; depends=[data_table magrittr Matrix stringi]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; xkcd = derive2 { name="xkcd"; version="0.0.5"; sha256="1cq4n7w4adj24qq658z15jkqvrn4pd5abxpcsdkzb2cq98m69iis"; depends=[extrafont ggplot2 Hmisc]; }; xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; xlsimple = derive2 { name="xlsimple"; version="0.0.1"; sha256="1x0b2pb1sg2sqmh4z03bchsc9fhcphi6mxk4nbb6my2cr0kqrrdq"; depends=[]; }; - xlsx = derive2 { name="xlsx"; version="0.5.7"; sha256="0qxkdpf1dvi0x7fy65abjx2j60rdx7fv5yi8l2wdm0f2631pnwin"; depends=[rJava xlsxjars]; }; + xlsx = derive2 { name="xlsx"; version="0.6.1"; sha256="1d58qlzdj4vrk4vnlyzri600ix7z3wnc30gnbcc1qz27nlbbv055"; depends=[rJava xlsxjars]; }; xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; xltabr = derive2 { name="xltabr"; version="0.1.2"; sha256="0pwbpcdiqkhvzxsi6yxly4zza12bw7zc7ji8cvhldw4yl5sxkz1l"; depends=[magrittr openxlsx]; }; xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; }; xmeta = derive2 { name="xmeta"; version="1.1-4"; sha256="1y9jldi8qn4jpr05g8fnvb23gig180hh36pc2v4y8n8289s9yvg2"; depends=[aod glmmML metafor mvmeta numDeriv]; }; xml2 = derive2 { name="xml2"; version="1.2.0"; sha256="154lmksfiwkhnlmryas25mjhfg6k4mmnnk7bbb29mnn5x5pr2yha"; depends=[Rcpp]; }; xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.1"; sha256="0q9d4l3p4ypc0qswnjwrd3as9bx9f1niixsc19y1msva51sg5h39"; depends=[]; }; + xmlrpc2 = derive2 { name="xmlrpc2"; version="1.0"; sha256="1h99z0kmmp5rmyglqwpaan6hbb8kg8q4783kjsyww43fl0l3imd8"; depends=[base64enc curl xml2]; }; xmrr = derive2 { name="xmrr"; version="1.0.1"; sha256="0h5861mym7k7xkby6zilcxq8i3yr06kcaam5pzi2y0q85iycb88f"; depends=[dplyr ggplot2 tidyr]; }; xoi = derive2 { name="xoi"; version="0.67-4"; sha256="180zzc81d883qzl1xgj88d9aslqmsgdvv8w1mx2613h1rkirkpdp"; depends=[qtl]; }; + xplain = derive2 { name="xplain"; version="0.2.1"; sha256="01hl9dxiqqxzdixqccga0sywlhv97pi1l51r9sr7v106s7q11jxn"; depends=[RCurl readr XML]; }; xpose = derive2 { name="xpose"; version="0.4.2"; sha256="11k07z76fpp4fvp3kfx1jc7bx1mwc1xfwyp46xwfhgfbazbvyfd7"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; xpose4 = derive2 { name="xpose4"; version="4.6.1"; sha256="1722ai8r94dmy4d2r728iir0hl2b2gmym8xjsqscfc6jw070734i"; depends=[dplyr gam Hmisc lattice lazyeval readr survival]; }; xptr = derive2 { name="xptr"; version="1.1"; sha256="12yvgbwm311hap3kk24wdx5zz084h0lhkj9k10mjzqp4a6aayi88"; depends=[]; }; @@ -12445,21 +12658,21 @@ in with self; { xsp = derive2 { name="xsp"; version="0.1.2"; sha256="1jbmxa234v52qji8sz4bkg24c2n65b0zh9py1wyyfzw9n1wx5w0r"; depends=[ggplot2 reshape2]; }; xtable = derive2 { name="xtable"; version="1.8-2"; sha256="0398qkpvlw3dv0myz4mjcyqwpwc2m31l127r8vdzwc71wb6s28qn"; depends=[]; }; xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; + xtensor = derive2 { name="xtensor"; version="0.6.1-0"; sha256="0ajxzjj8nyn7a0z16agj499j6qwj0ykag152pvmqvdm000dx5n1l"; depends=[Rcpp]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xtractomatic = derive2 { name="xtractomatic"; version="3.4.2"; sha256="1w70kk608avnf7zdjx79gxqmj12cw86ma4x0b9j92md1vmpw5389"; depends=[dplyr httr ncdf4 readr sp]; }; xts = derive2 { name="xts"; version="0.10-2"; sha256="1i11fczks4lh8rpi6xbm9bm7f3jpcp6xw03kv178g3n3361qhmc1"; depends=[zoo]; }; xwf = derive2 { name="xwf"; version="0.2-1"; sha256="1g94wbsq8flnkxxfxx6yg87siiwpyrx219an9a2cf1blnwjv9b68"; depends=[mgcv]; }; - xxIRT = derive2 { name="xxIRT"; version="2.0.3"; sha256="10n9rrhp0v71gmn0s2l2qi6sfplwj7anydw6rxqk409wg5is3x93"; depends=[dplyr ggplot2 lpSolveAPI magrittr reshape2]; }; - xyloplot = derive2 { name="xyloplot"; version="1.5"; sha256="0h90070m3xgcfky5q6vx6l2lfz0ihwbp2xg25mgmbijz4kg3n9d3"; depends=[]; }; + xxIRT = derive2 { name="xxIRT"; version="2.1.0"; sha256="17cyvbywfvbs93ky8qmzh6fp94dk24p3wpzb76lxb8nfsvakq5pf"; depends=[ggplot2 lpSolveAPI reshape2]; }; + xyloplot = derive2 { name="xyloplot"; version="1.6"; sha256="0d1dv3syfjwcp9fil9bl1my19d0kdyz1qrp1yf7ykrk8aq91762v"; depends=[]; }; xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; }; - yCrypticRNAs = derive2 { name="yCrypticRNAs"; version="0.99.2"; sha256="130zp8na3d50b49bcsqzsmjy2sif865h6vfpc5zmp1fhvkyykkfd"; depends=[biomaRt data_table IRanges mclust MESS Rcpp Rsamtools]; }; yaImpute = derive2 { name="yaImpute"; version="1.0-29"; sha256="1zxl4l54y9f9lmi17hlhsbsc4f1qb0dnnl5dg9frhq6bhw2lqxqb"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; - yaml = derive2 { name="yaml"; version="2.1.18"; sha256="15m4q5krfqg0avvqg9i2g6ns4757lk6zbyrwbx5c5bgh51glvd8v"; depends=[]; }; + yaml = derive2 { name="yaml"; version="2.1.19"; sha256="04bzrnfgbpk0rhkvzwp3k3ip7jpq26bjxz71bx5mwxmcjdb07nz5"; depends=[]; }; yardstick = derive2 { name="yardstick"; version="0.0.1"; sha256="165czwi62nrhhci06fb0rfpk2gki94aiyl4wlflmgpzmspmgz7m8"; depends=[broom dplyr MLmetrics pROC rlang tibble tidyr tidyselect]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; - yasp = derive2 { name="yasp"; version="0.1.0"; sha256="082w1l0892v0vrvfmc1ssgy9ccj30hcrg7m56x61spgcmckfshy4"; depends=[]; }; + yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; yearn = derive2 { name="yearn"; version="0.1.3"; sha256="03aqbf3q0nhg73pqpwlqdhpbmfa0rvv78b84b4mqir43601vjx65"; depends=[BiocInstaller devtools githubinstall]; }; yesno = derive2 { name="yesno"; version="0.1.0"; sha256="0l3v51kghbq9s00s736s4jvl8a0yhbgb908mjvhw6k5nqb2cgh8a"; depends=[]; }; @@ -12467,7 +12680,7 @@ in with self; { yhatr = derive2 { name="yhatr"; version="0.15.1"; sha256="18g2cr1kjxnfw6cwzl62ynppfv1zz732kbx18zq8918l85kx6wbw"; depends=[httr jsonlite stringr]; }; ykmeans = derive2 { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; }; yorkr = derive2 { name="yorkr"; version="0.0.7"; sha256="035pmvignq4lip3y5670kxj1n70ff04yy2jwi4837pimr9d0qjhv"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; - yuima = derive2 { name="yuima"; version="1.7.10"; sha256="0g1jh81s2i6ilpcbrjbz9wmk65m6xsdv8dif88x6v5k8660k2ksl"; depends=[boot cubature expm mvtnorm Rcpp RcppArmadillo zoo]; }; + yuima = derive2 { name="yuima"; version="1.8.1"; sha256="1jzk3623c1cpw9j8d9b96x6n0jwz8h2izzhrdp01cwwskbnv3hq2"; depends=[boot cubature expm mvtnorm Rcpp RcppArmadillo zoo]; }; yuimaGUI = derive2 { name="yuimaGUI"; version="1.2.0"; sha256="166hsq1nc0jzkqbz08y3dl0qdi58swascbkm1lc7zhsh6g93azjs"; depends=[DT ggplot2 plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; zCompositions = derive2 { name="zCompositions"; version="1.1.1"; sha256="1j6v7mfxhn67mr3q6cvcjj9pqc8a02w114z8q74h3l6jw8ahjg6m"; depends=[MASS NADA truncnorm]; }; @@ -12475,30 +12688,31 @@ in with self; { zTree = derive2 { name="zTree"; version="1.0.4"; sha256="058vjvxn1lw07nxw8rs1b8vnw6ccxh3swrmvjicvr35xmakj8qa0"; depends=[plyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.2"; sha256="0f9fsb4z8s7k5jnz2ayd52dzri0z46kjbm0gi5rfqjlmk13bhgk4"; depends=[foreach ggplot2 iterators plyr reshape2]; }; + zeitgebr = derive2 { name="zeitgebr"; version="0.3.3"; sha256="1g2bqc1xx42q54i6ck0ihpxkzw3hmxqn3cvv416afjc0cm45zw8d"; depends=[behavr data_table lomb pracma]; }; zeligverse = derive2 { name="zeligverse"; version="0.1.1"; sha256="1hf3hbgzdlhhyy2gvg984dwp8d0qm0ziyn8i9h5x00gwf74vn9dr"; depends=[Amelia dplyr MatchIt purrr rstudioapi tibble WhatIf Zelig ZeligChoice ZeligEI]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zenplots = derive2 { name="zenplots"; version="0.0-3"; sha256="1ba9xv522knzbirl6ac5hzbmsw8ignsmymbkps2w057w0fsc9iyz"; depends=[graph MASS PairViz]; }; - zetadiv = derive2 { name="zetadiv"; version="1.1.0"; sha256="0z90gpwyi2d0xnwy2vz7an5wv7jrwhl99kd2s76dlxylfjp7j2rn"; depends=[car glm2 Imap mgcv nnls scam vegan]; }; + zetadiv = derive2 { name="zetadiv"; version="1.1.1"; sha256="0laxp2pd5s0s9wcnvs1r4shid2gi8ap4y9py6gpl207ywq6cxmgz"; depends=[car glm2 Imap mgcv nnls scam vegan]; }; zfa = derive2 { name="zfa"; version="1.0"; sha256="0lddwpifkzggzvy56ans5pfknfr8laxcg264f3ph2z150gw1plsh"; depends=[SKAT]; }; zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; }; zip = derive2 { name="zip"; version="1.0.0"; sha256="0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg"; depends=[]; }; zipcode = derive2 { name="zipcode"; version="1.0"; sha256="1lvlf1h5fv412idpdssjfh4fki933dm5nhr41ppl1mf45b9j7azn"; depends=[]; }; zipfR = derive2 { name="zipfR"; version="0.6-10"; sha256="16h5saj0b2qm3qwd7arzamn0n05hn31ybgzq4pb10ri0ajs1cvic"; depends=[]; }; zipfextR = derive2 { name="zipfextR"; version="1.0.0"; sha256="007pw5z9rz8ng0llyd2088qxldc3sf0s35pcfqmm85qb94fdksdd"; depends=[tolerance VGAM]; }; - ziphsmm = derive2 { name="ziphsmm"; version="2.0.4"; sha256="19ypfx05z7c0skv1nvjivxarblizqqwaqpqyvnhqrckfb7lkhdby"; depends=[pracma Rcpp RcppArmadillo]; }; + ziphsmm = derive2 { name="ziphsmm"; version="2.0.6"; sha256="0lm6m2g9jd1v7gxv4viych8c59phbvz1yly1ydgajl8q251d8n87"; depends=[pracma Rcpp RcppArmadillo]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-7"; sha256="14j9jl2g7gn94nzs96mwsgwlxnfbr1crjfmfwbi3rk367xi197jb"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.5.1"; sha256="0lsyr8hfhk4dk129x2l1793v6nmf2k97wnsc44ir6ymip3i4zfld"; depends=[abind coda Formula matrixcalc rjags]; }; zonator = derive2 { name="zonator"; version="0.5.9"; sha256="04gjrm9nxnxsigrc30zghmv37ijsx27134hfnrbm51smw2y60dm4"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; - zoo = derive2 { name="zoo"; version="1.8-1"; sha256="16nc5jnpkf5j9vgq3pzssv7knj30mi055wj7q3sygz3l0d88hgfr"; depends=[lattice]; }; + zoo = derive2 { name="zoo"; version="1.8-2"; sha256="1lpwigxmi5sc23xrha4gcsccsm4yfsg0sa97y6vac3pg1lliblvx"; depends=[lattice]; }; zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; }; zooaRchGUI = derive2 { name="zooaRchGUI"; version="1.0.2"; sha256="0snggx0d69ajz6xxwnv03l12jpjrjkpy2dgf4lrpm2l8rspd27i4"; depends=[car coda foreign geomorph ggplot2 MASS pgirmess raster readxl rjags sp spdep splancs tcltk2 tkrplot vegan]; }; zoocat = derive2 { name="zoocat"; version="0.2.0"; sha256="1xqi90jnpqjdf3zr4pldh1a2gjppjwjrgkq71rvdhmcrf5s8jav0"; depends=[plyr reshape2 scales zoo]; }; - zooimage = derive2 { name="zooimage"; version="3.0-5"; sha256="1r3slmyw0dyqfa40dr5xga814z09ibhmmby8p1cii5lh61xm4c39"; depends=[filehash jpeg mlearning png svDialogs svMisc]; }; + zooimage = derive2 { name="zooimage"; version="5.5.2"; sha256="0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8"; depends=[digest DT filehash jpeg MASS mda mlearning png shiny svDialogs svMisc tiff]; }; zoom = derive2 { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; }; zoon = derive2 { name="zoon"; version="0.6.3"; sha256="11accyiv9n2zk7fq5bapbmv1ixadab19666i8w41bw642lafgivq"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 rworldmap SDMTools sp testthat]; }; zscorer = derive2 { name="zscorer"; version="0.1.0"; sha256="1199d72v9hm7k5jnll2ngn3jlfsiaxrrpbqzrkl0fghm6wnxcc6h"; depends=[]; }; zstdr = derive2 { name="zstdr"; version="0.1.1"; sha256="1rigsdh0f68l6vvvxp277cp8hbxj10x4588s6az1njxfpxrc8ajj"; depends=[Rcpp]; }; - ztable = derive2 { name="ztable"; version="0.1.5"; sha256="1jfqnqy9544gfvz3bsb48v4177nwp4b4n9l2743asq8sbq305b5r"; depends=[]; }; + ztable = derive2 { name="ztable"; version="0.1.8"; sha256="1hk5k9614n52dpfrhdws06w4gvwhnz8q47x4cwxx88qmrzm8z2m3"; depends=[]; }; ztype = derive2 { name="ztype"; version="0.1.0"; sha256="0brbq2rgkl4mhjbb70kkfv47lzs66k9ppfs2klavcbripirxn5fx"; depends=[assertthat dplyr ggplot2 lubridate magrittr rvest stringr]; }; zyp = derive2 { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; }; } diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 996e3932d2a2..a7827cf8b290 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -296,7 +296,6 @@ let protolite = [ pkgs.protobuf ]; qtbase = [ pkgs.qt4 ]; qtpaint = [ pkgs.qt4 ]; - R2GUESS = [ pkgs.gsl_1 ]; R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype.dev ]; RAppArmor = [ pkgs.libapparmor ]; rapportools = [ pkgs.which ]; @@ -478,7 +477,6 @@ let "cpa" "DALY" "dave" - "debug" "Deducer" "DeducerExtras" "DeducerPlugInExample" @@ -497,7 +495,6 @@ let "EasyqpcR" "EcoVirtual" "ENiRG" - "eVenn" "exactLoglinTest" "fat2Lpoly" "fbati" @@ -596,7 +593,6 @@ let "rareNMtests" "rAverage" "Rcmdr" - "RcmdrPlugin_BCA" "RcmdrPlugin_coin" "RcmdrPlugin_depthTools" "RcmdrPlugin_DoE" @@ -630,7 +626,6 @@ let "RcmdrPlugin_temis" "RcmdrPlugin_UCA" "recluster" - "relax" "relimp" "RenextGUI" "reportRx" @@ -749,6 +744,10 @@ let patches = [ ./patches/BayesXsrc.patch ]; }); + rhdf5 = old.rhdf5.overrideDerivation (attrs: { + patches = [ ./patches/rhdf5.patch ]; + }); + rJava = old.rJava.overrideDerivation (attrs: { preConfigure = '' export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/ @@ -774,10 +773,6 @@ let ''; }); - Mposterior = old.Mposterior.overrideDerivation (attrs: { - PKG_LIBS = "-L${pkgs.openblasCompat}/lib -lopenblas"; - }); - pbdZMQ = old.pbdZMQ.overrideDerivation (attrs: { postPatch = lib.optionalString stdenv.isDarwin '' for file in R/*.{r,r.in}; do diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R index 6614116a3bf6..1586b5b16b3a 100755 --- a/pkgs/development/r-modules/generate-r-packages.R +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -3,7 +3,7 @@ library(data.table) library(parallel) cl <- makeCluster(10) -biocVersion <- 3.6 +biocVersion <- 3.8 snapshotDate <- Sys.Date()-1 mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/") diff --git a/pkgs/development/r-modules/patches/rhdf5.patch b/pkgs/development/r-modules/patches/rhdf5.patch new file mode 100644 index 000000000000..86ada84c722f --- /dev/null +++ b/pkgs/development/r-modules/patches/rhdf5.patch @@ -0,0 +1,12 @@ +diff --git a/configure b/configure +index e3e21e8..3d947b6 100755 +--- a/configure ++++ b/configure +@@ -2859,6 +2859,7 @@ fi; + + echo "building the bundled hdf5 library..."; + cd ${BASEPBNAME}; ++sed -i 's#/bin/mv#mv#' configure + ./configure --with-pic --enable-shared=no CXX="${CXX}" CXXFLAGS="${CXXFLAGS}" CC="${CC}" CFLAGS="${CFLAGS}" F77="${F77}" + $MAKE lib + cd ../../ diff --git a/pkgs/development/ruby-modules/bundler/default.nix b/pkgs/development/ruby-modules/bundler/default.nix index 0c754fcfe3bc..2f9a82238325 100644 --- a/pkgs/development/ruby-modules/bundler/default.nix +++ b/pkgs/development/ruby-modules/bundler/default.nix @@ -4,8 +4,8 @@ buildRubyGem rec { inherit ruby; name = "${gemName}-${version}"; gemName = "bundler"; - version = "1.16.1"; - source.sha256 = "42b8e0f57093e1d10c15542f956a871446b759e7969d99f91caf3b6731c156e8"; + version = "1.16.2"; + source.sha256 = "3bb53e03db0a8008161eb4c816ccd317120d3c415ba6fee6f90bbc7f7eec8690"; dontPatchShebangs = true; postFixup = '' diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix index 7ba4bbf25d12..07f3053b9d43 100644 --- a/pkgs/development/tools/analysis/flow/default.nix +++ b/pkgs/development/tools/analysis/flow/default.nix @@ -4,16 +4,23 @@ with lib; stdenv.mkDerivation rec { - version = "0.72.0"; + version = "0.75.0"; name = "flow-${version}"; src = fetchFromGitHub { owner = "facebook"; repo = "flow"; rev = "v${version}"; - sha256 = "1lfnl1crwkygzbv3l85n30dqsfz627xrnmn4z3zxh7lazir5h8b8"; + sha256 = "0xrcjjk16w6anpy58qa4la1jyfjs0xg5xkp58slhai996wqif24k"; }; + # lwt.log is being split out into a separate package, so this can be + # removed once nixpkgs is updated. + # See https://github.com/ocsigen/lwt/issues/453#issuecomment-352897664 + postPatch = '' + substituteInPlace Makefile --replace lwt_log lwt.log + ''; + installPhase = '' mkdir -p $out/bin cp bin/flow $out/bin/ diff --git a/pkgs/development/tools/analysis/radare2-cutter/default.nix b/pkgs/development/tools/analysis/radare2-cutter/default.nix index d1ff712be2d3..a516e6e2a395 100644 --- a/pkgs/development/tools/analysis/radare2-cutter/default.nix +++ b/pkgs/development/tools/analysis/radare2-cutter/default.nix @@ -1,23 +1,28 @@ -{ stdenv, fetchFromGitHub, fetchpatch, qmake, pkgconfig, qtbase, qtsvg, radare2 }: +{ stdenv, fetchFromGitHub +# nativeBuildInputs +, qmake, pkgconfig +# Qt +, qtbase, qtsvg, qtwebengine +# buildInputs +, radare2 +, python3 }: stdenv.mkDerivation rec { name = "radare2-cutter-${version}"; - version = "1.3"; + version = "1.4"; src = fetchFromGitHub { owner = "radareorg"; repo = "cutter"; rev = "v${version}"; - sha256 = "1z76yz2i9k8mxjk85k2agdj941szdbl2gi66p3dh50878zqavfrr"; + sha256 = "0wsxb6jfpsmgsigmbnh08j99779bsjz02v6aasqcwl6hwjx0mjfk"; }; postUnpack = "export sourceRoot=$sourceRoot/src"; - patchFlags = [ "-p2" ]; - nativeBuildInputs = [ qmake pkgconfig ]; - buildInputs = [ qtbase qtsvg radare2 ]; + buildInputs = [ qtbase qtsvg qtwebengine radare2 python3 ]; enableParallelBuilding = true; diff --git a/pkgs/development/tools/analysis/snowman/default.nix b/pkgs/development/tools/analysis/snowman/default.nix index fba7d3d5cd41..638423ed5972 100644 --- a/pkgs/development/tools/analysis/snowman/default.nix +++ b/pkgs/development/tools/analysis/snowman/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "snowman-${version}"; - version = "2017-11-19"; + version = "0.1.2"; src = fetchFromGitHub { owner = "yegord"; repo = "snowman"; - rev = "d03c2d6ffbf262c0011584df59d6bd69c020e08e"; - sha256 = "0bzqp3zc100dzvybf57bj4dvnybvds0lmn1w2xjb19wkzm9liskn"; + rev = "v${version}"; + sha256 = "1ry14n8jydg6rzl52gyn0qhmv6bvivk7iwssp89lq5qk8k183x3k"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/tools/boomerang/default.nix b/pkgs/development/tools/boomerang/default.nix index f83353034a8f..7b5391725423 100644 --- a/pkgs/development/tools/boomerang/default.nix +++ b/pkgs/development/tools/boomerang/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "boomerang-${version}"; - version = "0.4.0-alpha-2018-01-18"; + version = "0.4.0-alpha-2018-07-03"; src = fetchFromGitHub { owner = "ceeac"; repo = "boomerang"; - rev = "b4ff8d573407a8ed6365d4bfe53d2d47d983e393"; - sha256 = "0x17vlm6y1paa49fi3pmzz7vzdqms19qkr274hkq32ql342b6i6x"; + rev = "377ff2d7db93d892c925e2d3e61aef818371ce7d"; + sha256 = "1ljbyj3b8xckr1wihyii3h576zgq0q88vli0ylpr3p4jxy5sm57j"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix index 28214e94c7aa..112cd840a9f5 100644 --- a/pkgs/development/tools/build-managers/bazel/default.nix +++ b/pkgs/development/tools/build-managers/bazel/default.nix @@ -1,9 +1,9 @@ -{ stdenv, lib, fetchurl, jdk, zip, unzip, bash, writeCBin, coreutils, makeWrapper, which, python, gnused +{ stdenv, lib, writeText, writeScript, fetchurl, jdk, zip, unzip, bash, writeCBin, coreutils, binutils, makeWrapper, which, python, gnused # Always assume all markers valid (don't redownload dependencies). # Also, don't clean up environment variables. , enableNixHacks ? false # Apple dependencies -, libcxx, CoreFoundation, CoreServices, Foundation +, cctools, clang, libcxx, CoreFoundation, CoreServices, Foundation }: stdenv.mkDerivation rec { @@ -56,9 +56,396 @@ stdenv.mkDerivation rec { } ''; + buildFile = writeText "BUILD" '' + package(default_visibility = ['//visibility:public']) + + filegroup(name = "empty") + + cc_toolchain_suite( + name = "nix", + toolchains = { + "darwin|compiler": ":nix_darwin_toolchain", + "k8|compiler": ":nix_linux_toolchain", + }, + ) + + cc_toolchain( + name = "nix_darwin_toolchain", + all_files = ":osx_wrapper", + compiler_files = ":osx_wrapper", + cpu = "darwin", + dwp_files = ":empty", + dynamic_runtime_libs = [":empty"], + linker_files = ":osx_wrapper", + objcopy_files = ":empty", + static_runtime_libs = [":empty"], + strip_files = ":empty", + supports_param_files = 0, + ) + + cc_toolchain( + name = "nix_linux_toolchain", + all_files = ":empty", + compiler_files = ":empty", + cpu = "k8", + dwp_files = ":empty", + dynamic_runtime_libs = [":empty"], + linker_files = ":empty", + objcopy_files = ":empty", + static_runtime_libs = [":empty"], + strip_files = ":empty", + supports_param_files = 0, + ) + + filegroup( + name = "osx_wrapper", + srcs = ["osx_cc_wrapper.sh"], + ) + ''; + + crosstoolFile = writeText "CROSSTOOL" ('' + major_version: "local" + minor_version: "" + default_target_cpu: "same_as_host" + '' + lib.optionalString stdenv.isDarwin '' + default_toolchain { + cpu: "darwin" + toolchain_identifier: "local_darwin" + } + toolchain { + abi_version: "local" + abi_libc_version: "local" + builtin_sysroot: "" + compiler: "compiler" + host_system_name: "local" + needsPic: true + target_libc: "macosx" + target_cpu: "darwin" + target_system_name: "local" + toolchain_identifier: "local_darwin" + + tool_path { name: "ar" path: "${cctools}/bin/libtool" } + tool_path { name: "compat-ld" path: "${cctools}/bin/ld" } + tool_path { name: "cpp" path: "${clang}/bin/cpp" } + tool_path { name: "dwp" path: "${coreutils}/bin/false" } + tool_path { name: "gcc" path: "osx_cc_wrapper.sh" } + cxx_flag: "-std=c++0x" + linker_flag: "-lstdc++" + linker_flag: "-undefined" + linker_flag: "dynamic_lookup" + linker_flag: "-headerpad_max_install_names" + # We know all files in `/nix/store` are immutable so it's safe to disable inclusion checks for them + cxx_builtin_include_directory: "/nix/store" + tool_path { name: "gcov" path: "${coreutils}/bin/false" } + tool_path { name: "ld" path: "${cctools}/bin/ld" } + tool_path { name: "nm" path: "${cctools}/bin/nm" } + tool_path { name: "objcopy" path: "${binutils}/bin/objcopy" } + objcopy_embed_flag: "-I" + objcopy_embed_flag: "binary" + tool_path { name: "objdump" path: "${binutils}/bin/objdump" } + tool_path { name: "strip" path: "${cctools}/bin/strip" } + + # Anticipated future default. + unfiltered_cxx_flag: "-no-canonical-prefixes" + + # Make C++ compilation deterministic. Use linkstamping instead of these + # compiler symbols. + unfiltered_cxx_flag: "-Wno-builtin-macro-redefined" + unfiltered_cxx_flag: "-D__DATE__=\"redacted\"" + unfiltered_cxx_flag: "-D__TIMESTAMP__=\"redacted\"" + unfiltered_cxx_flag: "-D__TIME__=\"redacted\"" + + # Security hardening on by default. + # Conservative choice; -D_FORTIFY_SOURCE=2 may be unsafe in some cases. + compiler_flag: "-D_FORTIFY_SOURCE=1" + compiler_flag: "-fstack-protector" + + # Enable coloring even if there's no attached terminal. Bazel removes the + # escape sequences if --nocolor is specified. + compiler_flag: "-fcolor-diagnostics" + + # All warnings are enabled. Maybe enable -Werror as well? + compiler_flag: "-Wall" + # Enable a few more warnings that aren't part of -Wall. + compiler_flag: "-Wthread-safety" + compiler_flag: "-Wself-assign" + + # Keep stack frames for debugging, even in opt mode. + compiler_flag: "-fno-omit-frame-pointer" + + # Anticipated future default. + linker_flag: "-no-canonical-prefixes" + + compilation_mode_flags { + mode: DBG + # Enable debug symbols. + compiler_flag: "-g" + } + compilation_mode_flags { + mode: OPT + # No debug symbols. + # Maybe we should enable https://gcc.gnu.org/wiki/DebugFission for opt or even generally? + # However, that can't happen here, as it requires special handling in Bazel. + compiler_flag: "-g0" + + # Conservative choice for -O + # -O3 can increase binary size and even slow down the resulting binaries. + # Profile first and / or use FDO if you need better performance than this. + compiler_flag: "-O2" + + # Disable assertions + compiler_flag: "-DNDEBUG" + + # Removal of unused code and data at link time (can this increase binary size in some cases?). + compiler_flag: "-ffunction-sections" + compiler_flag: "-fdata-sections" + } + linking_mode_flags { mode: DYNAMIC } + } + '' + lib.optionalString stdenv.isLinux '' + default_toolchain { + cpu: "k8" + toolchain_identifier: "local_linux" + } + + toolchain { + abi_version: "local" + abi_libc_version: "local" + builtin_sysroot: "" + compiler: "compiler" + host_system_name: "local" + needsPic: true + supports_gold_linker: false + supports_incremental_linker: false + supports_fission: false + supports_interface_shared_objects: false + supports_normalizing_ar: false + supports_start_end_lib: false + target_libc: "local" + target_cpu: "k8" + target_system_name: "local" + toolchain_identifier: "local_linux" + + tool_path { name: "ar" path: "${binutils}/bin/ar" } + tool_path { name: "compat-ld" path: "${binutils}/bin/ld" } + tool_path { name: "cpp" path: "${stdenv.cc}/bin/cpp" } + tool_path { name: "dwp" path: "${coreutils}/bin/false" } + tool_path { name: "gcc" path: "${stdenv.cc}/bin/cc" } + cxx_flag: "-std=c++0x" + linker_flag: "-lstdc++" + # We know all files in `/nix/store` are immutable so it's safe to disable inclusion checks for them + cxx_builtin_include_directory: "/nix/store" + tool_path { name: "gcov" path: "${coreutils}/bin/false" } + + # C(++) compiles invoke the compiler (as that is the one knowing where + # to find libraries), but we provide LD so other rules can invoke the linker. + tool_path { name: "ld" path: "${binutils}/bin/ld" } + + tool_path { name: "nm" path: "${binutils}/bin/nm" } + tool_path { name: "objcopy" path: "${binutils}/bin/objcopy" } + objcopy_embed_flag: "-I" + objcopy_embed_flag: "binary" + tool_path { name: "objdump" path: "${binutils}/bin/objdump" } + tool_path { name: "strip" path: "${binutils}/bin/strip" } + + # Anticipated future default. + unfiltered_cxx_flag: "-no-canonical-prefixes" + unfiltered_cxx_flag: "-fno-canonical-system-headers" + + # Make C++ compilation deterministic. Use linkstamping instead of these + # compiler symbols. + unfiltered_cxx_flag: "-Wno-builtin-macro-redefined" + unfiltered_cxx_flag: "-D__DATE__=\"redacted\"" + unfiltered_cxx_flag: "-D__TIMESTAMP__=\"redacted\"" + unfiltered_cxx_flag: "-D__TIME__=\"redacted\"" + + # Security hardening on by default. + # Conservative choice; -D_FORTIFY_SOURCE=2 may be unsafe in some cases. + # We need to undef it before redefining it as some distributions now have + # it enabled by default. + compiler_flag: "-U_FORTIFY_SOURCE" + compiler_flag: "-D_FORTIFY_SOURCE=1" + compiler_flag: "-fstack-protector" + linker_flag: "-Wl,-z,relro,-z,now" + + # Enable coloring even if there's no attached terminal. Bazel removes the + # escape sequences if --nocolor is specified. This isn't supported by gcc + # on Ubuntu 14.04. + # compiler_flag: "-fcolor-diagnostics" + + # All warnings are enabled. Maybe enable -Werror as well? + compiler_flag: "-Wall" + # Enable a few more warnings that aren't part of -Wall. + compiler_flag: "-Wunused-but-set-parameter" + # But disable some that are problematic. + compiler_flag: "-Wno-free-nonheap-object" # has false positives + + # Keep stack frames for debugging, even in opt mode. + compiler_flag: "-fno-omit-frame-pointer" + + # Anticipated future default. + linker_flag: "-no-canonical-prefixes" + # Have gcc return the exit code from ld. + linker_flag: "-pass-exit-codes" + # Gold linker only? Can we enable this by default? + # linker_flag: "-Wl,--warn-execstack" + # linker_flag: "-Wl,--detect-odr-violations" + + compilation_mode_flags { + mode: DBG + # Enable debug symbols. + compiler_flag: "-g" + } + compilation_mode_flags { + mode: OPT + + # No debug symbols. + # Maybe we should enable https://gcc.gnu.org/wiki/DebugFission for opt or + # even generally? However, that can't happen here, as it requires special + # handling in Bazel. + compiler_flag: "-g0" + + # Conservative choice for -O + # -O3 can increase binary size and even slow down the resulting binaries. + # Profile first and / or use FDO if you need better performance than this. + compiler_flag: "-O2" + + # Disable assertions + compiler_flag: "-DNDEBUG" + + # Removal of unused code and data at link time (can this increase binary size in some cases?). + compiler_flag: "-ffunction-sections" + compiler_flag: "-fdata-sections" + linker_flag: "-Wl,--gc-sections" + } + linking_mode_flags { mode: DYNAMIC } + } + ''); + + osxCcWrapperFile = writeScript "osx_cc_wrapper.sh" (if stdenv.isDarwin then '' + #!${customBash}/bin/bash + # + # Copyright 2015 The Bazel Authors. All rights reserved. + # + # Licensed under the Apache License, Version 2.0 (the "License"); + # you may not use this file except in compliance with the License. + # You may obtain a copy of the License at + # + # http://www.apache.org/licenses/LICENSE-2.0 + # + # Unless required by applicable law or agreed to in writing, software + # distributed under the License is distributed on an "AS IS" BASIS, + # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + # See the License for the specific language governing permissions and + # limitations under the License. + # + # OS X relpath is not really working. This is a wrapper script around gcc + # to simulate relpath behavior. + # + # This wrapper uses install_name_tool to replace all paths in the binary + # (bazel-out/.../path/to/original/library.so) by the paths relative to + # the binary. It parses the command line to behave as rpath is supposed + # to work. + # + # See https://blogs.oracle.com/dipol/entry/dynamic_libraries_rpath_and_mac + # on how to set those paths for Mach-O binaries. + # + set -eu + + GCC="${clang}/bin/clang" + INSTALL_NAME_TOOL="${cctools}/bin/install_name_tool" + + LIBS= + LIB_DIRS= + RPATHS= + OUTPUT= + # let parse the option list + for i in "$@"; do + if [[ "''${OUTPUT}" = "1" ]]; then + OUTPUT=$i + elif [[ "$i" =~ ^-l(.*)$ ]]; then + LIBS="''${BASH_REMATCH[1]} $LIBS" + elif [[ "$i" =~ ^-L(.*)$ ]]; then + LIB_DIRS="''${BASH_REMATCH[1]} $LIB_DIRS" + elif [[ "$i" =~ ^-Wl,-rpath,\@loader_path/(.*)$ ]]; then + RPATHS="''${BASH_REMATCH[1]} ''${RPATHS}" + elif [[ "$i" = "-o" ]]; then + # output is coming + OUTPUT=1 + fi + done + + # Call gcc + ''${GCC} "$@" + + function get_library_path() { + for libdir in ''${LIB_DIRS}; do + if [ -f ''${libdir}/lib$1.so ]; then + echo "''${libdir}/lib$1.so" + elif [ -f ''${libdir}/lib$1.dylib ]; then + echo "''${libdir}/lib$1.dylib" + fi + done + } + + # A convenient method to return the actual path even for non symlinks + # and multi-level symlinks. + function get_realpath() { + local previous="$1" + local next=$(readlink "''${previous}") + while [ -n "''${next}" ]; do + previous="''${next}" + next=$(readlink "''${previous}") + done + echo "''${previous}" + } + + # Get the path of a lib inside a tool + function get_otool_path() { + # the lib path is the path of the original lib relative to the workspace + get_realpath $1 | sed 's|^.*/bazel-out/|bazel-out/|' + } + + # Do replacements in the output + for rpath in ''${RPATHS}; do + for lib in ''${LIBS}; do + unset libname + if [ -f "$(dirname ''${OUTPUT})/''${rpath}/lib''${lib}.so" ]; then + libname="lib''${lib}.so" + elif [ -f "$(dirname ''${OUTPUT})/''${rpath}/lib''${lib}.dylib" ]; then + libname="lib''${lib}.dylib" + fi + # ''${libname-} --> return $libname if defined, or undefined otherwise. This is to make + # this set -e friendly + if [[ -n "''${libname-}" ]]; then + libpath=$(get_library_path ''${lib}) + if [ -n "''${libpath}" ]; then + ''${INSTALL_NAME_TOOL} -change $(get_otool_path "''${libpath}") \ + "@loader_path/''${rpath}/''${libname}" "''${OUTPUT}" + fi + fi + done + done + '' else ""); + postPatch = stdenv.lib.optionalString stdenv.hostPlatform.isDarwin '' export NIX_LDFLAGS="$NIX_LDFLAGS -F${CoreFoundation}/Library/Frameworks -F${CoreServices}/Library/Frameworks -F${Foundation}/Library/Frameworks" + export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -isystem ${libcxx}/include/c++/v1" '' + '' + mkdir nix + cp ${buildFile} nix/BUILD + cp ${crosstoolFile} nix/CROSSTOOL + line=70 + for flag in $NIX_CFLAGS_COMPILE; do + sed -i -e "$line a compiler_flag: \"$flag\"" nix/CROSSTOOL + line=$((line + 1)) + done + for flag in $NIX_LDFLAGS; do + sed -i -e "$line a linker_flag: \"-Wl,$flag\"" nix/CROSSTOOL + line=$((line + 1)) + done + + cp ${osxCcWrapperFile} nix/osx_cc_wrapper.sh find src/main/java/com/google/devtools -type f -print0 | while IFS="" read -r -d "" path; do substituteInPlace "$path" \ --replace /bin/bash ${customBash}/bin/bash \ @@ -67,15 +454,14 @@ stdenv.mkDerivation rec { # Fixup scripts that generate scripts. Not fixed up by patchShebangs below. substituteInPlace scripts/bootstrap/compile.sh \ --replace /bin/sh ${customBash}/bin/bash - echo "build --copt=\"$(echo $NIX_CFLAGS_COMPILE | sed -e 's/ /" --copt=\"/g')\"" >> .bazelrc - echo "build --host_copt=\"$(echo $NIX_CFLAGS_COMPILE | sed -e 's/ /" --host_copt=\"/g')\"" >> .bazelrc - echo "build --linkopt=\"-Wl,$(echo $NIX_LDFLAGS | sed -e 's/ /" --linkopt=\"-Wl,/g')\"" >> .bazelrc - echo "build --host_linkopt=\"-Wl,$(echo $NIX_LDFLAGS | sed -e 's/ /" --host_linkopt=\"-Wl,/g')\"" >> .bazelrc - sed -i -e "361 a --copt=\"$(echo $NIX_CFLAGS_COMPILE | sed -e 's/ /" --copt=\"/g')\" \\\\" scripts/bootstrap/compile.sh - sed -i -e "361 a --host_copt=\"$(echo $NIX_CFLAGS_COMPILE | sed -e 's/ /" --host_copt=\"/g')\" \\\\" scripts/bootstrap/compile.sh - sed -i -e "361 a --linkopt=\"-Wl,$(echo $NIX_LDFLAGS | sed -e 's/ /" --linkopt=\"-Wl,/g')\" \\\\" scripts/bootstrap/compile.sh - sed -i -e "361 a --host_linkopt=\"-Wl,$(echo $NIX_LDFLAGS | sed -e 's/ /" --host_linkopt=\"-Wl,/g')\" \\\\" scripts/bootstrap/compile.sh + sed -i -e "361 a --crosstool_top=//nix:nix --host_crosstool_top=//nix:nix \\\\" scripts/bootstrap/compile.sh patchShebangs . + '' + lib.optionalString stdenv.isDarwin '' + sed -i "s,/usr/bin/xcrun clang,clang $NIX_CFLAGS_COMPILE $NIX_LDFLAGS -framework CoreFoundation,g" \ + scripts/bootstrap/compile.sh \ + src/tools/xcode/realpath/BUILD \ + src/tools/xcode/stdredirect/BUILD \ + tools/osx/BUILD ''; buildInputs = [ @@ -83,13 +469,14 @@ stdenv.mkDerivation rec { ]; nativeBuildInputs = [ + gnused zip python unzip makeWrapper which customBash - ] ++ lib.optionals (stdenv.isDarwin) [ libcxx CoreFoundation CoreServices Foundation ]; + ] ++ lib.optionals (stdenv.isDarwin) [ cctools clang libcxx CoreFoundation CoreServices Foundation ]; # If TMPDIR is in the unpack dir we run afoul of blaze's infinite symlink # detector (see com.google.devtools.build.lib.skyframe.FileFunction). @@ -100,7 +487,8 @@ stdenv.mkDerivation rec { ./compile.sh ./output/bazel --output_user_root=/tmp/.bazel build //scripts:bash_completion \ --spawn_strategy=standalone \ - --genrule_strategy=standalone + --genrule_strategy=standalone \ + --crosstool_top=//nix:nix --host_crosstool_top=//nix:nix cp bazel-bin/scripts/bazel-complete.bash output/ ''; @@ -110,6 +498,7 @@ stdenv.mkDerivation rec { checkPhase = '' export TEST_TMPDIR=$(pwd) ./output/bazel test --test_output=errors \ + --crosstool_top=//nix:nix --host_crosstool_top=//nix:nix \ examples/cpp:hello-success_test \ examples/java-native/src/test/java/com/example/myproject:hello ''; diff --git a/pkgs/development/tools/build-managers/buildbot/default.nix b/pkgs/development/tools/build-managers/buildbot/default.nix index ed73d26768a4..3729abfe247d 100644 --- a/pkgs/development/tools/build-managers/buildbot/default.nix +++ b/pkgs/development/tools/build-managers/buildbot/default.nix @@ -14,11 +14,11 @@ let package = pythonPackages.buildPythonApplication rec { name = "${pname}-${version}"; pname = "buildbot"; - version = "1.1.1"; + version = "1.2.0"; src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "1vcmanx3ma3cfyiddjcmsnx6qmxd3m5blqax04rcsiq2zq4dmzir"; + sha256 = "02gwmls8kgm6scy36hdy0bg645zs1pxlrgwkcn79wrl7cfmabcbv"; }; buildInputs = with pythonPackages; [ diff --git a/pkgs/development/tools/build-managers/buildbot/plugins.nix b/pkgs/development/tools/build-managers/buildbot/plugins.nix index c8a12c192647..430cdee3ca8c 100644 --- a/pkgs/development/tools/build-managers/buildbot/plugins.nix +++ b/pkgs/development/tools/build-managers/buildbot/plugins.nix @@ -11,7 +11,7 @@ src = pythonPackages.fetchPypi { inherit pname version format; - sha256 = "01v9w8iy9q6fwrmz6db7fanjixax7whn74k67bj0czrbjjkpfzvb"; + sha256 = "001kxjcyn5sxiq7m1izy4djj7alw6qpgaid4f518s9xgm4a8hwcb"; }; meta = with stdenv.lib; { @@ -29,7 +29,7 @@ src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "1cwxkzpgwzk9b361rj980bbnmhzzsr46pgf94zqpg3na8xm6hpwj"; + sha256 = "11p9l9r9rh8cq0ihzjcdxfbi55n7inbsz45zqq67rkvqn5nhj5b6"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; @@ -49,7 +49,7 @@ src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "0ival58f50128315d0nck63pzya2zm7q6hvgmxfbjl0my8il9p2l"; + sha256 = "1yx63frfpbvwy4hfib1psyq5ad0wysyzfrla8d7lgbdaip021wzw"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; @@ -69,7 +69,7 @@ src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "0jiwfb699nqbmpcm88y187ig4ha6p7d4v98mjwa9blhm54dk8kh1"; + sha256 = "06my75hli3w1skdkx1qz6zqw2wckanhrcvlqm4inylj9v9pcrgv6"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; @@ -89,7 +89,7 @@ src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "00mfn24gbwr2p3n7nsijzv949l7hiksiafhma18nnh40r8f4l5f2"; + sha256 = "073gz44fa5k1p8k46k0ld9gg16j8zdj6sc297qfyqpiw28ybhc5s"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; diff --git a/pkgs/development/tools/build-managers/buildbot/worker.nix b/pkgs/development/tools/build-managers/buildbot/worker.nix index b1cfb6aeaf2f..968411ca9cc5 100644 --- a/pkgs/development/tools/build-managers/buildbot/worker.nix +++ b/pkgs/development/tools/build-managers/buildbot/worker.nix @@ -3,11 +3,11 @@ pythonPackages.buildPythonApplication (rec { name = "${pname}-${version}"; pname = "buildbot-worker"; - version = "1.1.1"; + version = "1.2.0"; src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "02xfzlcy3cnvc3cmpl9gs6209a3qm71yz5pahbws9jcyhv6fbrrm"; + sha256 = "0lcaga16zf75aa6ckl9ahjbrs3n3bw7nj6m8g03n77873cgh94x4"; }; buildInputs = with pythonPackages; [ setuptoolsTrial mock ]; diff --git a/pkgs/development/tools/build-managers/conan/default.nix b/pkgs/development/tools/build-managers/conan/default.nix index 46433233992b..d80769bf210b 100644 --- a/pkgs/development/tools/build-managers/conan/default.nix +++ b/pkgs/development/tools/build-managers/conan/default.nix @@ -20,12 +20,12 @@ let newPython = python.override { }; in newPython.pkgs.buildPythonApplication rec { - version = "1.4.5"; + version = "1.5.1"; pname = "conan"; src = newPython.pkgs.fetchPypi { inherit pname version; - sha256 = "1mjakrv1d7la3lrxsv6jjqprqwmslpjmfxkw3z7pk56rzlp99nv2"; + sha256 = "1b0iym41fpgv8vwbyys5hrh87pvh3hy2m9c01ybm72z2ki2pwxim"; }; postPatch = '' diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix index 7570c3be0679..f810f97ef497 100644 --- a/pkgs/development/tools/build-managers/gradle/default.nix +++ b/pkgs/development/tools/build-managers/gradle/default.nix @@ -52,12 +52,12 @@ rec { }; gradle_latest = gradleGen rec { - name = "gradle-4.8"; + name = "gradle-4.8.1"; nativeVersion = "0.14"; src = fetchurl { url = "http://services.gradle.org/distributions/${name}-bin.zip"; - sha256 = "1fpihf35nd2wqh3ghkk9x0x2nr1s4vx3dgrfn2q4xagsm299dqpk"; + sha256 = "0wgdf1iv0izi957hay1xfsk5xnl6s2vx5dammcwy8say9fclscxg"; }; }; diff --git a/pkgs/development/tools/build-managers/redo/default.nix b/pkgs/development/tools/build-managers/redo/default.nix index 8063b6747666..bd0562463fd7 100644 --- a/pkgs/development/tools/build-managers/redo/default.nix +++ b/pkgs/development/tools/build-managers/redo/default.nix @@ -1,10 +1,10 @@ {stdenv, fetchurl, perl }: stdenv.mkDerivation rec { - name = "redo-1.2"; + name = "redo-1.3"; src = fetchurl { url = "https://jdebp.eu./Repository/freebsd/${name}.tar.gz"; - sha256 = "0qr8plllxfn32r4rgnalzlhcs3b4l8a4ga8ig9v8i5iy1qnfhqnf"; + sha256 = "1yx7nd59s01j096hr1zbnbx6mvd6ljzd4vgawh7p2l644jgwj70r"; }; nativeBuildInputs = [ perl /* for pod2man */ ]; diff --git a/pkgs/development/tools/database/sqlitebrowser/default.nix b/pkgs/development/tools/database/sqlitebrowser/default.nix index 054eabdb5e43..1b4a4b7f50b2 100644 --- a/pkgs/development/tools/database/sqlitebrowser/default.nix +++ b/pkgs/development/tools/database/sqlitebrowser/default.nix @@ -33,7 +33,7 @@ mkDerivation rec { description = "DB Browser for SQLite"; homepage = http://sqlitebrowser.org/; license = licenses.gpl3; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ ma27 ]; platforms = platforms.linux; # can only test on linux }; } diff --git a/pkgs/development/tools/easyjson/default.nix b/pkgs/development/tools/easyjson/default.nix index 9277ebe363fb..253f5b374d3c 100644 --- a/pkgs/development/tools/easyjson/default.nix +++ b/pkgs/development/tools/easyjson/default.nix @@ -3,15 +3,15 @@ buildGoPackage rec { name = "easyjson-unstable-${version}"; - version = "2018-03-23"; - rev = "8b799c424f57fa123fc63a99d6383bc6e4c02578"; + version = "2018-06-06"; + rev = "3fdea8d05856a0c8df22ed4bc71b3219245e4485"; goPackagePath = "github.com/mailru/easyjson"; src = fetchgit { inherit rev; url = "https://github.com/mailru/easyjson"; - sha256 = "15ba6drfmw98lzw5qjh3ijcxh9iz9rcp3hid169yfd08l06z05w0"; + sha256 = "0g3crph77yhv4ipdnwqc32z4cp87ahi4ikad5kyy6q4znnxliz74"; }; goDeps = ./deps.nix; diff --git a/pkgs/development/tools/gauge/default.nix b/pkgs/development/tools/gauge/default.nix index 12152e988669..f4f7af0e084a 100644 --- a/pkgs/development/tools/gauge/default.nix +++ b/pkgs/development/tools/gauge/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "gauge-${version}"; - version = "0.9.7"; + version = "1.0.0"; goPackagePath = "github.com/getgauge/gauge"; excludedPackages = ''\(build\|man\)''; @@ -11,7 +11,7 @@ buildGoPackage rec { owner = "getgauge"; repo = "gauge"; rev = "v${version}"; - sha256 = "09afsi97yxlqwmrxvihravqvz17m7y402gbw4hvdk0iixa6jpq6a"; + sha256 = "1dnlqnpzqsikpxy2mndrmxpcsj4r1zcjmv8px1idzblp117vsnw1"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/tools/misc/babeltrace/default.nix b/pkgs/development/tools/misc/babeltrace/default.nix index b2130118fed9..cb00111b2b46 100644 --- a/pkgs/development/tools/misc/babeltrace/default.nix +++ b/pkgs/development/tools/misc/babeltrace/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pkgconfig, glib, libuuid, popt, elfutils }: stdenv.mkDerivation rec { - name = "babeltrace-1.5.5"; + name = "babeltrace-1.5.6"; src = fetchurl { url = "https://www.efficios.com/files/babeltrace/${name}.tar.bz2"; - sha256 = "1b78fam1gbsalga5pppn8ka461q35a9svz3mlbv82ssakdw4d4a0"; + sha256 = "1dxv2pwyqx2p7kzhcfansij40m9kanl85x2r68dmgp98g0hvq22k"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/tools/misc/gob2/default.nix b/pkgs/development/tools/misc/gob2/default.nix index 73c9021c5e9f..17aa3214ebcc 100644 --- a/pkgs/development/tools/misc/gob2/default.nix +++ b/pkgs/development/tools/misc/gob2/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { meta = { description = "Preprocessor for making GObjects with inline C code"; - homepage = http://www.jirka.org/gob.html; + homepage = https://www.jirka.org/gob.html; license = stdenv.lib.licenses.gpl2Plus; platforms = stdenv.lib.platforms.unix; }; diff --git a/pkgs/development/tools/misc/tokei/default.nix b/pkgs/development/tools/misc/tokei/default.nix index d1f6cc4ea29b..0059c10afe0c 100644 --- a/pkgs/development/tools/misc/tokei/default.nix +++ b/pkgs/development/tools/misc/tokei/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { name = "tokei-${version}"; - version = "7.0.0"; + version = "7.0.3"; src = fetchFromGitHub { owner = "Aaronepower"; repo = "tokei"; rev = "v${version}"; - sha256 = "1c8m2arhy58ky8pzj0dp3w9gpacia9jwmayi0il640l4fm8nr734"; + sha256 = "1n2ddwmyd414p6a98khq8y0bmljwcclw30wy5zy5b6z1l40yxcza"; }; - cargoSha256 = "1cl4fjbvrw7zhpb8rxj566ddlxbj9vdsb1cp7mh6llmvaia2vgks"; + cargoSha256 = "0ngqk8nnw00s25y91vgsl37j26xl2ws75l3lvklf9gbd4bi01crv"; meta = with stdenv.lib; { description = "Count code, quickly"; diff --git a/pkgs/development/web/nodejs/v9.nix b/pkgs/development/web/nodejs/v9.nix deleted file mode 100644 index 117ca7749871..000000000000 --- a/pkgs/development/web/nodejs/v9.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ stdenv, callPackage, lib, enableNpm ? true }: - -let - buildNodejs = callPackage ./nodejs.nix {}; -in - buildNodejs { - inherit enableNpm; - version = "9.11.2"; - sha256 = "04y2dnbf6jl8j0ykfkdwhir09h274d13k843d7lqfz3bgyn4wj06"; - patches = lib.optionals stdenv.isDarwin [ ./no-xcode-v7.patch ]; - } diff --git a/pkgs/games/dwarf-fortress/default.nix b/pkgs/games/dwarf-fortress/default.nix index ee2e442daa28..b959ea3eda73 100644 --- a/pkgs/games/dwarf-fortress/default.nix +++ b/pkgs/games/dwarf-fortress/default.nix @@ -15,13 +15,10 @@ let # unfuck is linux-only right now, we will just use it there dwarf-fortress-unfuck = if stdenv.isLinux then callPackage ./unfuck.nix { } - else null; + else null; dwarf-fortress = callPackage ./wrapper { - themes = { - "phoebus" = phoebus-theme; - "cla" = cla-theme; - }; + inherit themes; }; dwarf-therapist-original = pkgs.qt5.callPackage ./dwarf-therapist { @@ -32,6 +29,8 @@ let dwarf-therapist = callPackage ./dwarf-therapist/wrapper.nix { }; + legends-browser = callPackage ./legends-browser {}; + themes = callPackage ./themes { stdenv = stdenvNoCC; }; diff --git a/pkgs/games/dwarf-fortress/dfhack/default.nix b/pkgs/games/dwarf-fortress/dfhack/default.nix index 11964c627da2..a6430fa3c260 100644 --- a/pkgs/games/dwarf-fortress/dfhack/default.nix +++ b/pkgs/games/dwarf-fortress/dfhack/default.nix @@ -5,11 +5,11 @@ }: let - dfVersion = "0.44.10"; - version = "${dfVersion}-r1"; + dfVersion = "0.44.11"; + version = "${dfVersion}-alpha1"; # revision of library/xml submodule - xmlRev = "3c0bf63674d5430deadaf7befaec42f0ec1e8bc5"; + xmlRev = "853bd161270f50b21fe4b751de339458f78f56d6"; arch = if stdenv.system == "x86_64-linux" then "64" @@ -40,7 +40,7 @@ in stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "DFHack"; repo = "dfhack"; - sha256 = "15hz90lfg7asgm4bqa2yi2lkwzrljphb42q6616sriwzs66xia6h"; + sha256 = "1vzrpdw0pn18calayf9dwqpyg37cb7wkzkvskxjx9nak5ilxzywm"; rev = version; fetchSubmodules = true; }; @@ -72,6 +72,6 @@ in stdenv.mkDerivation rec { homepage = https://github.com/DFHack/dfhack/; license = licenses.zlib; platforms = [ "x86_64-linux" "i686-linux" ]; - maintainers = with maintainers; [ robbinch a1russell abbradar ]; + maintainers = with maintainers; [ robbinch a1russell abbradar numinit ]; }; } diff --git a/pkgs/games/dwarf-fortress/dwarf-therapist/default.nix b/pkgs/games/dwarf-fortress/dwarf-therapist/default.nix index 305f3cdb1fa3..bd63e3eae91f 100644 --- a/pkgs/games/dwarf-fortress/dwarf-therapist/default.nix +++ b/pkgs/games/dwarf-fortress/dwarf-therapist/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "dwarf-therapist-original-${version}"; - version = "40.0.0"; + version = "40.1.0"; src = fetchFromGitHub { owner = "Dwarf-Therapist"; repo = "Dwarf-Therapist"; rev = "v${version}"; - sha256 = "0b5y7800nzydn0jcc0vglgi9mzkj8f3qhw16wd872cf5396xnag9"; + sha256 = "1aklwic5npgkp8rkrvz2q9idkipsm1h26mgd8q03135nzl1ld9q3"; }; buildInputs = [ qtbase qtdeclarative ]; @@ -20,8 +20,8 @@ stdenv.mkDerivation rec { '' else null; meta = with stdenv.lib; { - description = "Tool to manage dwarves in in a running game of Dwarf Fortress"; - maintainers = with maintainers; [ the-kenny abbradar bendlas ]; + description = "Tool to manage dwarves in a running game of Dwarf Fortress"; + maintainers = with maintainers; [ the-kenny abbradar bendlas numinit ]; license = licenses.mit; platforms = platforms.unix; homepage = https://github.com/Dwarf-Therapist/Dwarf-Therapist; diff --git a/pkgs/games/dwarf-fortress/game.nix b/pkgs/games/dwarf-fortress/game.nix index 477ba33b77c6..97a94c940cd4 100644 --- a/pkgs/games/dwarf-fortress/game.nix +++ b/pkgs/games/dwarf-fortress/game.nix @@ -9,7 +9,7 @@ with lib; let baseVersion = "44"; - patchVersion = "10"; + patchVersion = "11"; dfVersion = "0.${baseVersion}.${patchVersion}"; libpath = makeLibraryPath [ stdenv.cc.cc stdenv.cc.libc dwarf-fortress-unfuck SDL ]; @@ -21,15 +21,15 @@ let srcs = { "x86_64-linux" = fetchurl { url = "${homepage}df_${baseVersion}_${patchVersion}_linux.tar.bz2"; - sha256 = "1cqm43hn3ar9d8a7y7dwq48ajp72cirn1gclh8r2fykkypprxmp2"; + sha256 = "1qizfkxl2k6pn70is4vz94q4k55bc3pm13b2r6yqi6lw1cnna4sf"; }; "i686-linux" = fetchurl { url = "${homepage}df_${baseVersion}_${patchVersion}_linux32.tar.bz2"; - sha256 = "0gdb6sq8725nwdisxwha8f5b6arq570s73aj4gdrh611gxh13r6n"; + sha256 = "11m39lfyrsxlw1g7f269q7fzwichg06l21fxhqzgvlvmzmxsf8q5"; }; "x86_64-darwin" = fetchurl { url = "${homepage}df_${baseVersion}_${patchVersion}_osx.tar.bz2"; - sha256 = "1wpa45d81q8f5mhqmaxvdkz93k6cm3pg7vpsqjjjsp5s961gd74g"; + sha256 = "073hmcj7bm323m3xqi42605rkvmgmv83bnxz1byymgs8aqyfykkx"; }; }; @@ -88,6 +88,6 @@ stdenv.mkDerivation { inherit homepage; license = licenses.unfreeRedistributable; platforms = attrNames srcs; - maintainers = with maintainers; [ a1russell robbinch roconnor the-kenny abbradar ]; + maintainers = with maintainers; [ a1russell robbinch roconnor the-kenny abbradar numinit ]; }; } diff --git a/pkgs/games/dwarf-fortress/legends-browser/default.nix b/pkgs/games/dwarf-fortress/legends-browser/default.nix new file mode 100644 index 000000000000..3bc4fa9c4bb5 --- /dev/null +++ b/pkgs/games/dwarf-fortress/legends-browser/default.nix @@ -0,0 +1,36 @@ +{ stdenvNoCC, buildEnv, writeShellScriptBin, fetchurl, jre }: + +let + name = "legends-browser-${version}"; + version = "1.17.1"; + + jar = fetchurl { + url = "https://github.com/robertjanetzko/LegendsBrowser/releases/download/${version}/legendsbrowser-${version}.jar"; + sha256 = "05b4ksbl4481rh3ykfirbp6wvxhppcd5mvclhn9995gsrcaj8gx9"; + }; + + script = writeShellScriptBin "legends-browser" '' + set -eu + BASE="$HOME/.local/share/df_linux/legends-browser/" + mkdir -p "$BASE" + cd "$BASE" + if [[ ! -e legendsbrowser.properties ]]; then + echo 'Creating initial configuration for legends-browser' + echo "last=$(cd ..; pwd)" > legendsbrowser.properties + fi + ${jre}/bin/java -jar ${jar} + ''; +in + +buildEnv { + inherit name; + paths = [ script ]; + + meta = with stdenvNoCC.lib; { + description = "A multi-platform, open source, java-based legends viewer for dwarf fortress"; + maintainers = with maintainers; [ Baughn ]; + license = licenses.mit; + platforms = platforms.all; + homepage = https://github.com/robertjanetzko/LegendsBrowser; + }; +} diff --git a/pkgs/games/dwarf-fortress/soundsense.nix b/pkgs/games/dwarf-fortress/soundsense.nix index f09ac8435482..0a501bc3c052 100644 --- a/pkgs/games/dwarf-fortress/soundsense.nix +++ b/pkgs/games/dwarf-fortress/soundsense.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { version = "2016-1_196"; - dfVersion = "0.44.10"; + dfVersion = "0.44.11"; inherit soundPack; name = "soundsense-${version}"; src = fetchzip { diff --git a/pkgs/games/dwarf-fortress/unfuck.nix b/pkgs/games/dwarf-fortress/unfuck.nix index d816ba461b11..b9887fe4cfc0 100644 --- a/pkgs/games/dwarf-fortress/unfuck.nix +++ b/pkgs/games/dwarf-fortress/unfuck.nix @@ -3,7 +3,7 @@ , ncurses, glib, gtk2, libsndfile, zlib }: -let dfVersion = "0.44.10"; in +let dfVersion = "0.44.11"; in stdenv.mkDerivation { name = "dwarf_fortress_unfuck-${dfVersion}"; @@ -12,7 +12,7 @@ stdenv.mkDerivation { owner = "svenstaro"; repo = "dwarf_fortress_unfuck"; rev = dfVersion; - sha256 = "0vb19qx2ibc79j4bgbk9lskb883qfb0815zw1dfz9k7rqwal8mzj"; + sha256 = "0kkk8md2xq8l0c4m9hkg66qqjad3xi4jbb5z2ginhqixxpfbz8rf"; }; cmakeFlags = [ @@ -20,12 +20,26 @@ stdenv.mkDerivation { "-DGTK2_GDKCONFIG_INCLUDE_DIR=${gtk2.out}/lib/gtk-2.0/include" ]; + makeFlags = [ + ''CFLAGS="-fkeep-inline-functions"'' + ''CXXFLAGS="-fkeep-inline-functions"'' + ]; + nativeBuildInputs = [ cmake ]; buildInputs = [ libSM SDL SDL_image SDL_ttf glew openalSoft ncurses gtk2 libsndfile zlib libGL ]; + postPatch = '' + substituteInPlace CMakeLists.txt --replace \ + 'set(CMAKE_BUILD_TYPE Release)' \ + 'set(CMAKE_BUILD_TYPE Debug)' + ''; + + # Don't strip unused symbols; dfhack hooks into some of them. + dontStrip = true; + installPhase = '' install -D -m755 ../build/libgraphics.so $out/lib/libgraphics.so ''; diff --git a/pkgs/games/dwarf-fortress/wrapper/default.nix b/pkgs/games/dwarf-fortress/wrapper/default.nix index e82cc2be680d..9b171fc88b76 100644 --- a/pkgs/games/dwarf-fortress/wrapper/default.nix +++ b/pkgs/games/dwarf-fortress/wrapper/default.nix @@ -17,15 +17,15 @@ let else theme; # These are in inverse order for first packages to override the next ones. - pkgs = lib.optional (theme != null) ptheme - ++ lib.optional enableDFHack dfhack_ + themePkg = lib.optional (theme != null) ptheme; + pkgs = lib.optional enableDFHack dfhack_ ++ lib.optional enableSoundSense soundSense ++ [ dwarf-fortress-original ]; env = buildEnv { name = "dwarf-fortress-env-${dwarf-fortress-original.dfVersion}"; - paths = pkgs; + paths = themePkg ++ pkgs; pathsToLink = [ "/" "/hack" "/hack/scripts" ]; ignoreCollisions = true; @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { src = ./dwarf-fortress-init.in; inherit env; exe = if stdenv.isLinux then "libs/Dwarf_Fortress" - else "dwarfort.exe"; + else "dwarfort.exe"; }; runDF = ./dwarf-fortress.in; diff --git a/pkgs/games/ezquake/default.nix b/pkgs/games/ezquake/default.nix index 2684a56a8286..ff39d1b99650 100644 --- a/pkgs/games/ezquake/default.nix +++ b/pkgs/games/ezquake/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, curl, expat -, jansson, libpng, libjpeg, libGLU_combined, pcre +, jansson, libpng, libjpeg, libGLU_combined, libXxf86vm, pcre , pkgconfig, SDL2, vimNox }: stdenv.mkDerivation rec { @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkgconfig ]; buildInputs = [ - expat curl jansson libpng libjpeg libGLU_combined pcre SDL2 vimNox + expat curl jansson libpng libjpeg libGLU_combined libXxf86vm pcre SDL2 vimNox ]; installPhase = with stdenv.lib; let @@ -28,6 +28,8 @@ stdenv.mkDerivation rec { mv ezquake-${sys}-${arch} $out/bin/ezquake ''; + enableParallelBuilding = true; + meta = with stdenv.lib; { homepage = http://ezquake.github.io/; description = "A modern QuakeWorld client focused on competitive online play."; diff --git a/pkgs/games/ivan/default.nix b/pkgs/games/ivan/default.nix index 3431be5359ea..3281c3d28d12 100644 --- a/pkgs/games/ivan/default.nix +++ b/pkgs/games/ivan/default.nix @@ -1,4 +1,4 @@ -{stdenv, fetchFromGitHub, libpng, cmake, SDL2, SDL2_mixer, pkgconfig, pcre}: +{ stdenv, fetchFromGitHub, cmake, pkgconfig, SDL2, SDL2_mixer, alsaLib, libpng, pcre }: stdenv.mkDerivation rec { @@ -12,12 +12,12 @@ stdenv.mkDerivation rec { sha256 = "1r3fcccgpjmzzkg0lfmq76igjapr01kh97vz671z60jg7gyh301b"; }; - buildInputs = [SDL2 SDL2_mixer libpng pcre]; + nativeBuildInputs = [ cmake pkgconfig ]; - nativeBuildInputs = [cmake pkgconfig]; + buildInputs = [ SDL2 SDL2_mixer alsaLib libpng pcre ]; hardeningDisable = ["all"]; - + # To store bone and high score files in ~/.ivan of the current user patches = [./homedir.patch]; diff --git a/pkgs/games/liberal-crime-squad/default.nix b/pkgs/games/liberal-crime-squad/default.nix index d6a2afb26cb8..fef6e11d9be9 100644 --- a/pkgs/games/liberal-crime-squad/default.nix +++ b/pkgs/games/liberal-crime-squad/default.nix @@ -1,4 +1,4 @@ -{ fetchFromGitHub, stdenv, ncurses, autoreconfHook, SDL2, SDL2_mixer }: +{ fetchFromGitHub, stdenv, autoreconfHook, libiconv, ncurses, SDL2, SDL2_mixer }: stdenv.mkDerivation rec { version = "2016-07-06"; @@ -12,7 +12,9 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ autoreconfHook ]; - buildInputs = [ ncurses SDL2 SDL2_mixer ]; + buildInputs = [ libiconv ncurses SDL2 SDL2_mixer ]; + + enableParallelBuilding = true; meta = with stdenv.lib; { description = "A humorous politically themed ncurses game"; diff --git a/pkgs/games/scummvm/default.nix b/pkgs/games/scummvm/default.nix index fcde5b5ea59f..f4590081898a 100644 --- a/pkgs/games/scummvm/default.nix +++ b/pkgs/games/scummvm/default.nix @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Program to run certain classic graphical point-and-click adventure games (such as Monkey Island)"; - homepage = http://www.scummvm.org/; + homepage = https://www.scummvm.org/; license = licenses.gpl2; maintainers = [ maintainers.peterhoeg ]; platforms = platforms.linux; diff --git a/pkgs/games/warzone2100/default.nix b/pkgs/games/warzone2100/default.nix index 6ed276c0695b..6165cacfdca5 100644 --- a/pkgs/games/warzone2100/default.nix +++ b/pkgs/games/warzone2100/default.nix @@ -1,5 +1,5 @@ { stdenv, lib, fetchurl, perl, unzip, zip, which, pkgconfig -, qtbase, qtscript, SDL2, libtheora, openal, glew, physfs, fribidi +, qtbase, qtscript, SDL2, libtheora, openal, glew, physfs, fribidi, libXrandr , withVideos ? false }: @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { sha256 = "10kmpr4cby95zwqsl1zwx95d9achli6khq7flv6xmrq30a39xazw"; }; - buildInputs = [ qtbase qtscript SDL2 libtheora openal glew physfs fribidi ]; + buildInputs = [ qtbase qtscript SDL2 libtheora openal glew physfs fribidi libXrandr ]; nativeBuildInputs = [ perl zip unzip pkgconfig ]; postPatch = '' diff --git a/pkgs/misc/cups/drivers/canon/default.nix b/pkgs/misc/cups/drivers/canon/default.nix index 351a64abd331..1c0b8e13ab0b 100644 --- a/pkgs/misc/cups/drivers/canon/default.nix +++ b/pkgs/misc/cups/drivers/canon/default.nix @@ -1,10 +1,10 @@ -{stdenv, fetchurl, unzip, autoreconfHook, libtool, makeWrapper, cups, ghostscript, callPackage_i686 }: +{stdenv, fetchurl, unzip, autoreconfHook, libtool, makeWrapper, cups, ghostscript, pkgsi686Linux }: let - i686_NIX_GCC = callPackage_i686 ({gcc}: gcc) {}; - i686_libxml2 = callPackage_i686 ({libxml2}: libxml2) {}; - i686_glibc = callPackage_i686 ({glibc}: glibc) {}; + i686_NIX_GCC = pkgsi686Linux.callPackage ({gcc}: gcc) {}; + i686_libxml2 = pkgsi686Linux.callPackage ({libxml2}: libxml2) {}; + i686_glibc = pkgsi686Linux.callPackage ({glibc}: glibc) {}; src_canon = fetchurl { url = "https://files.canon-europe.com/files/soft45378/software/o147jen_linuxufrII_0290.zip"; diff --git a/pkgs/misc/cups/drivers/mfcl2740dwcupswrapper/default.nix b/pkgs/misc/cups/drivers/mfcl2740dwcupswrapper/default.nix new file mode 100644 index 000000000000..0da85498723f --- /dev/null +++ b/pkgs/misc/cups/drivers/mfcl2740dwcupswrapper/default.nix @@ -0,0 +1,45 @@ +{ stdenv, fetchurl, dpkg, makeWrapper, coreutils, gnugrep, gnused, perl, mfcl2740dwlpr }: + +stdenv.mkDerivation rec { + name = "mfcl2740dwcupswrapper-${version}"; + version = "3.2.0-1"; + + src = fetchurl { + url = "https://download.brother.com/welcome/dlf101726/${name}.i386.deb"; + sha256 = "078453e19f20ab6c7fc4d63c3e09f162f3d1410c04c23a294b6ffbd720b35ffb"; + }; + + nativeBuildInputs = [ dpkg makeWrapper ]; + + unpackPhase = "dpkg-deb -x $src $out"; + + installPhase = '' + basedir=${mfcl2740dwlpr}/opt/brother/Printers/MFCL2740DW + dir=$out/opt/brother/Printers/MFCL2740DW + + substituteInPlace $dir/cupswrapper/brother_lpdwrapper_MFCL2740DW \ + --replace /usr/bin/perl ${perl}/bin/perl \ + --replace "basedir =~" "basedir = \"$basedir\"; #" \ + --replace "PRINTER =~" "PRINTER = \"MFCL2740DW\"; #" + + substituteInPlace $dir/cupswrapper/paperconfigml1 \ + --replace /usr/bin/perl ${perl}/bin/perl + + wrapProgram $dir/cupswrapper/brother_lpdwrapper_MFCL2740DW \ + --prefix PATH : ${stdenv.lib.makeBinPath [ coreutils gnugrep gnused ]} + + mkdir -p $out/lib/cups/filter + mkdir -p $out/share/cups/model + + ln $dir/cupswrapper/brother_lpdwrapper_MFCL2740DW $out/lib/cups/filter + ln $dir/cupswrapper/brother-MFCL2740DW-cups-en.ppd $out/share/cups/model + ''; + + meta = { + description = "Brother MFC-L2740DW CUPS wrapper driver"; + homepage = http://www.brother.com/; + license = stdenv.lib.licenses.gpl2; + platforms = [ "x86_64-linux" "i686-linux" ]; + maintainers = [ stdenv.lib.maintainers.enzime ]; + }; +} diff --git a/pkgs/misc/cups/drivers/mfcl2740dwlpr/default.nix b/pkgs/misc/cups/drivers/mfcl2740dwlpr/default.nix new file mode 100644 index 000000000000..6d3cf18e5296 --- /dev/null +++ b/pkgs/misc/cups/drivers/mfcl2740dwlpr/default.nix @@ -0,0 +1,43 @@ +{ pkgsi686Linux, stdenv, fetchurl, dpkg, makeWrapper, coreutils, ghostscript, gnugrep, gnused, which, perl }: + +stdenv.mkDerivation rec { + name = "mfcl2740dwlpr-${version}"; + version = "3.2.0-1"; + + src = fetchurl { + url = "https://download.brother.com/welcome/dlf101727/${name}.i386.deb"; + sha256 = "10a2bc672bd54e718b478f3afc7e47d451557f7d5513167d3ad349a3d00bffaf"; + }; + + nativeBuildInputs = [ dpkg makeWrapper ]; + + unpackPhase = "dpkg-deb -x $src $out"; + + installPhase = '' + dir=$out/opt/brother/Printers/MFCL2740DW + + substituteInPlace $dir/lpd/filter_MFCL2740DW \ + --replace /usr/bin/perl ${perl}/bin/perl \ + --replace "BR_PRT_PATH =~" "BR_PRT_PATH = \"$dir\"; #" \ + --replace "PRINTER =~" "PRINTER = \"MFCL2740DW\"; #" + + wrapProgram $dir/lpd/filter_MFCL2740DW \ + --prefix PATH : ${stdenv.lib.makeBinPath [ + coreutils ghostscript gnugrep gnused which + ]} + + # need to use i686 glibc here, these are 32bit proprietary binaries + interpreter=${pkgsi686Linux.glibc}/lib/ld-linux.so.2 + patchelf --set-interpreter "$interpreter" $dir/inf/braddprinter + patchelf --set-interpreter "$interpreter" $dir/lpd/brprintconflsr3 + patchelf --set-interpreter "$interpreter" $dir/lpd/rawtobr3 + ''; + + meta = { + description = "Brother MFC-L2740DW lpr driver"; + homepage = http://www.brother.com/; + license = stdenv.lib.licenses.unfree; + platforms = [ "x86_64-linux" "i686-linux" ]; + maintainers = [ stdenv.lib.maintainers.enzime ]; + }; +} diff --git a/pkgs/misc/emulators/dolphin-emu/master.nix b/pkgs/misc/emulators/dolphin-emu/master.nix index 3bfbc2565f35..6959177b3c9d 100644 --- a/pkgs/misc/emulators/dolphin-emu/master.nix +++ b/pkgs/misc/emulators/dolphin-emu/master.nix @@ -1,26 +1,16 @@ { stdenv, fetchFromGitHub, makeWrapper, makeDesktopItem, pkgconfig, cmake, qt5 -, bluez, ffmpeg, libao, libGLU_combined, gtk2, glib, pcre, gettext, libXrandr -, libpthreadstubs, libusb, libXext, libXxf86vm, libXinerama, libSM, libXdmcp -, readline, openal, libevdev, portaudio, curl -, vulkan-loader ? null -, libpulseaudio ? null +, bluez, ffmpeg, libao, libGLU_combined, pcre, gettext, libXrandr, libusb, lzo +, libpthreadstubs, libXext, libXxf86vm, libXinerama, libSM, libXdmcp, readline +, openal, libudev, libevdev, portaudio, curl, alsaLib, miniupnpc, enet, polarssl +, soundtouch, sfml, vulkan-loader ? null, libpulseaudio ? null # - Inputs used for Darwin -, CoreBluetooth, cf-private, ForceFeedback, IOKit, OpenGL, wxGTK, libpng, hidapi - -# options -, dolphin-wxgui ? true -, dolphin-qtgui ? false }: - -# XOR: ensure only wx XOR qt are enabled -assert dolphin-wxgui || dolphin-qtgui; -assert !(dolphin-wxgui && dolphin-qtgui); +, CoreBluetooth, cf-private, ForceFeedback, IOKit, OpenGL, libpng, hidapi }: let desktopItem = makeDesktopItem { name = "dolphin-emu-master"; - exec = stdenv.lib.optionalString dolphin-wxgui "dolphin-emu-wx" - + stdenv.lib.optionalString dolphin-qtgui "dolphin-emu-qt"; + exec = "dolphin-emu-master"; icon = "dolphin-emu"; comment = "A Wii/GameCube Emulator"; desktopName = "Dolphin Emulator (master)"; @@ -30,63 +20,54 @@ let }; in stdenv.mkDerivation rec { name = "dolphin-emu-${version}"; - version = "2018-06-22"; + version = "2018-07-02"; src = fetchFromGitHub { owner = "dolphin-emu"; repo = "dolphin"; - rev = "971972069cc2813ee7fa5b630c67baab2b35d12d"; - sha256 = "0kf6dzvwmvhqb1iy15ldap0mmfbyyzl5f14jc65a110vwv5sww7n"; + rev = "87c5d00e2085090e51c1d44e4fd271437123c722"; + sha256 = "04f0my5k1vrj3pcg07m6wy4in4cs95db8367bp7zkraparmj1mjk"; }; enableParallelBuilding = true; nativeBuildInputs = [ cmake pkgconfig ] - ++ stdenv.lib.optionals stdenv.isLinux [ makeWrapper ]; + ++ stdenv.lib.optionals stdenv.isLinux [ makeWrapper ]; buildInputs = [ - curl ffmpeg libao libGLU_combined gtk2 glib pcre gettext libpthreadstubs - libXrandr libXext libXxf86vm libXinerama libSM readline openal libXdmcp - portaudio libusb libpulseaudio libpng hidapi - ] ++ stdenv.lib.optionals dolphin-qtgui [ qt5.qtbase ] - ++ stdenv.lib.optionals stdenv.isLinux [ bluez libevdev vulkan-loader ] - ++ stdenv.lib.optionals stdenv.isDarwin [ wxGTK CoreBluetooth cf-private - ForceFeedback IOKit OpenGL ]; + curl ffmpeg libao libGLU_combined pcre gettext libpthreadstubs libpulseaudio + libXrandr libXext libXxf86vm libXinerama libSM readline openal libXdmcp lzo + portaudio libusb libpng hidapi miniupnpc enet polarssl soundtouch sfml + qt5.qtbase + ] ++ stdenv.lib.optionals stdenv.isLinux [ + bluez libudev libevdev alsaLib vulkan-loader + ] ++ stdenv.lib.optionals stdenv.isDarwin [ + CoreBluetooth cf-private OpenGL ForceFeedback IOKit + ]; cmakeFlags = [ - "-DGTK2_GLIBCONFIG_INCLUDE_DIR=${glib.out}/lib/glib-2.0/include" - "-DGTK2_GDKCONFIG_INCLUDE_DIR=${gtk2.out}/lib/gtk-2.0/include" - "-DGTK2_INCLUDE_DIRS=${gtk2.dev}/include/gtk-2.0" - "-DENABLE_LTO=True" - ] ++ stdenv.lib.optionals (!dolphin-qtgui) [ "-DENABLE_QT2=False" ] - ++ stdenv.lib.optionals stdenv.isDarwin [ - "-DOSX_USE_DEFAULT_SEARCH_PATH=True" - ]; + "-DUSE_SHARED_ENET=ON" + "-DENABLE_LTO=ON" + ] ++ stdenv.lib.optionals stdenv.isDarwin [ + "-DOSX_USE_DEFAULT_SEARCH_PATH=True" + ]; - # - Change install path to Applications relative to $out # - Allow Dolphin to use nix-provided libraries instead of building them - preConfigure = stdenv.lib.optionalString stdenv.isDarwin '' - sed -i -e 's,/Applications,Applications,g' \ - Source/Core/DolphinWX/CMakeLists.txt + preConfigure = '' + sed -i -e 's,DISTRIBUTOR "None",DISTRIBUTOR "NixOS",g' CMakeLists.txt + '' + stdenv.lib.optionalString stdenv.isDarwin '' + sed -i -e 's,if(NOT APPLE),if(true),g' CMakeLists.txt sed -i -e 's,if(LIBUSB_FOUND AND NOT APPLE),if(LIBUSB_FOUND),g' \ CMakeLists.txt - sed -i -e 's,if(NOT APPLE),if(true),g' CMakeLists.txt - ''; - - preInstall = stdenv.lib.optionalString stdenv.isDarwin '' - mkdir -p "$out/Applications" ''; postInstall = '' cp -r ${desktopItem}/share/applications $out/share + ln -sf $out/bin/dolphin-emu $out/bin/dolphin-emu-master '' + stdenv.lib.optionalString stdenv.isLinux '' wrapProgram $out/bin/dolphin-emu-nogui \ --prefix LD_LIBRARY_PATH : ${vulkan-loader}/lib - wrapProgram $out/bin/dolphin-emu-wx \ - --prefix LD_LIBRARY_PATH : ${vulkan-loader}/lib - '' + stdenv.lib.optionalString (dolphin-qtgui && stdenv.isLinux) '' wrapProgram $out/bin/dolphin-emu \ --prefix LD_LIBRARY_PATH : ${vulkan-loader}/lib - ln -sf $out/bin/dolphin-emu $out/bin/dolphin-emu-qt ''; meta = with stdenv.lib; { diff --git a/pkgs/misc/emulators/termtekst/default.nix b/pkgs/misc/emulators/termtekst/default.nix new file mode 100644 index 000000000000..8186aba1ee56 --- /dev/null +++ b/pkgs/misc/emulators/termtekst/default.nix @@ -0,0 +1,36 @@ +{ lib, fetchFromGitHub, python3Packages, ncurses }: + +python3Packages.buildPythonApplication rec { + pname = "termtekst"; + version = "1.0"; + + src = fetchFromGitHub { + owner = "zevv"; + repo = pname; + rev = "v${version}"; + sha256 = "1gm7j5d49a60wm7px82b76f610i8pl8ccz4r6qsz90z4mp3lyw9b"; + }; + + propagatedBuildInputs = with python3Packages; [ ncurses requests ]; + + patchPhase = '' + substituteInPlace setup.py \ + --replace "assert" "assert 1==1 #" + substituteInPlace src/tt \ + --replace "locale.setlocale" "#locale.setlocale" + ''; + + meta = with lib; { + description = ''Console NOS Teletekst viewer in Python''; + longDescription = '' + Small Python app using curses to display Dutch NOS Teletekst on + the Linux console. The original Teletekst font includes 2x6 + raster graphics glyphs which have no representation in unicode; + as a workaround the braille set is abused to approximate the + graphics. + ''; + license = licenses.mit; + maintainers = with maintainers; [ leenaars ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/misc/emulators/wine/packages.nix b/pkgs/misc/emulators/wine/packages.nix index d2305aa37ba6..156db148435e 100644 --- a/pkgs/misc/emulators/wine/packages.nix +++ b/pkgs/misc/emulators/wine/packages.nix @@ -1,11 +1,11 @@ -{ system, stdenv, stdenv_32bit, lib, pkgs, pkgsi686Linux, callPackage, callPackage_i686, +{ system, stdenv, stdenv_32bit, lib, pkgs, pkgsi686Linux, callPackage, wineRelease ? "stable", supportFlags }: let src = lib.getAttr wineRelease (callPackage ./sources.nix {}); in with src; { - wine32 = callPackage_i686 ./base.nix { + wine32 = pkgsi686Linux.callPackage ./base.nix { name = "wine-${version}"; inherit src version supportFlags; pkgArches = [ pkgsi686Linux ]; @@ -33,4 +33,3 @@ in with src; { platforms = [ "x86_64-linux" ]; }; } - diff --git a/pkgs/misc/mxt-app/default.nix b/pkgs/misc/mxt-app/default.nix index 813000492039..fe9e8d3f4b00 100644 --- a/pkgs/misc/mxt-app/default.nix +++ b/pkgs/misc/mxt-app/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchFromGitHub, autoreconfHook, libtool }: stdenv.mkDerivation rec{ - version="1.27"; + version="1.28"; name = "mxt-app-${version}"; src = fetchFromGitHub { owner = "atmel-maxtouch"; repo = "mxt-app"; rev = "v${version}"; - sha256 = "0m1qxsdkwgajyd0sdw909l4w31csa26nw0xzr9ldddnvzb1va05h"; + sha256 = "1z2mir4ib9xzxmy0daazzvlga41n80zch1xyp1iz98rrdsnvd1la"; }; nativeBuildInputs = [ autoreconfHook ]; @@ -21,6 +21,6 @@ stdenv.mkDerivation rec{ homepage = https://github.com/atmel-maxtouch/mxt-app; license = licenses.bsd2; maintainers = [ maintainers.colemickens ]; - platforms = platforms.unix; + platforms = platforms.linux; }; } diff --git a/pkgs/misc/seafile-shared/default.nix b/pkgs/misc/seafile-shared/default.nix index f1ab822c6f4a..c47b3c322ca5 100644 --- a/pkgs/misc/seafile-shared/default.nix +++ b/pkgs/misc/seafile-shared/default.nix @@ -1,12 +1,14 @@ -{stdenv, fetchurl, which, autoreconfHook, pkgconfig, curl, vala, python, intltool, fuse, ccnet}: +{stdenv, fetchFromGitHub, which, autoreconfHook, pkgconfig, curl, vala, python, intltool, fuse, ccnet}: stdenv.mkDerivation rec { - version = "6.1.0"; + version = "6.2.1"; name = "seafile-shared-${version}"; - src = fetchurl { - url = "https://github.com/haiwen/seafile/archive/v${version}.tar.gz"; - sha256 = "03zvxk25311xgn383k54qvvpr8xbnl1vxd99fg4ca9yg5rmir1q6"; + src = fetchFromGitHub { + owner = "haiwen"; + repo = "seafile"; + rev = "v${version}"; + sha256 = "199ivh6fbz4sgbz15mr6m8985yky5n3z6vpcpnh2ldjx4277gq68"; }; nativeBuildInputs = [ pkgconfig which autoreconfHook vala intltool ]; @@ -18,13 +20,6 @@ stdenv.mkDerivation rec { "--disable-console" ]; - postInstall = '' - # Remove seafile binary - rm -rf "$out/bin/seafile" - # Remove cli client binary - rm -rf "$out/bin/seaf-cli" - ''; - meta = with stdenv.lib; { homepage = https://github.com/haiwen/seafile; description = "Shared components of Seafile: seafile-daemon, libseafile, libseafile python bindings, manuals, and icons"; diff --git a/pkgs/misc/themes/adapta/default.nix b/pkgs/misc/themes/adapta/default.nix index c7033bba4b67..5c2cab90df42 100644 --- a/pkgs/misc/themes/adapta/default.nix +++ b/pkgs/misc/themes/adapta/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "adapta-gtk-theme-${version}"; - version = "3.93.1.22"; + version = "3.93.1.28"; src = fetchFromGitHub { owner = "adapta-project"; repo = "adapta-gtk-theme"; rev = version; - sha256 = "1i74vpf7fv1r6074lv8f9515hzrhcbi2wg069vmc10ihwpml391r"; + sha256 = "0r7fsyy074xd63p58fin3qsfq1535wafk0nag49551915hgdr18n"; }; preferLocalBuild = true; diff --git a/pkgs/misc/themes/jade1/default.nix b/pkgs/misc/themes/jade1/default.nix index 9870b3fefebb..e6096ef829d0 100644 --- a/pkgs/misc/themes/jade1/default.nix +++ b/pkgs/misc/themes/jade1/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "theme-jade1-${version}"; - version = "3.2"; + version = "3.3"; src = fetchFromGitHub { owner = "madmaxms"; repo = "theme-jade-1"; rev = "v${version}"; - sha256 = "0lf8cawn2s2x1b9af0cznhqzx3dsr8h18srcwjz7af3y5daxf311"; + sha256 = "06w06dvzs1llmzpyz3c5yycsw3gslsgikalfcq5l92d72z4kzfw7"; }; propagatedUserEnvPkgs = [ gtk-engine-murrine ]; diff --git a/pkgs/misc/uboot/default.nix b/pkgs/misc/uboot/default.nix index 9486a504ac39..bac766c7b722 100644 --- a/pkgs/misc/uboot/default.nix +++ b/pkgs/misc/uboot/default.nix @@ -155,6 +155,12 @@ in rec { ''; }; + ubootNovena = buildUBoot rec { + defconfig = "novena_defconfig"; + extraMeta.platforms = ["armv7l-linux"]; + filesToInstall = ["u-boot.bin" "SPL"]; + }; + ubootOdroidXU3 = buildUBoot rec { defconfig = "odroid-xu3_defconfig"; extraMeta.platforms = ["armv7l-linux"]; diff --git a/pkgs/os-specific/gnu/default.nix b/pkgs/os-specific/gnu/default.nix index 478040132b82..5dc52c766f18 100644 --- a/pkgs/os-specific/gnu/default.nix +++ b/pkgs/os-specific/gnu/default.nix @@ -3,7 +3,7 @@ args@{ fetchgit, stdenv, autoconf, automake, automake111x, libtool , texinfo, glibcCross, hurdPartedCross, libuuid, samba , gccCrossStageStatic, gcc -, forceSystem, newScope, platform, config +, pkgsi686Linux, newScope, platform, config , targetPlatform, buildPlatform , overrides ? {} , buildPackages, pkgs @@ -90,7 +90,7 @@ let mig = callPackage ./mig { # Build natively, but force use of a 32-bit environment because we're # targeting `i586-pc-gnu'. - stdenv = (forceSystem "i686-linux" "i386").stdenv; + stdenv = pkgsi686Linux.stdenv; }; # XXX: Use this one for its `.crossDrv'. Using the one above from diff --git a/pkgs/os-specific/linux/kernel/hardened-config.nix b/pkgs/os-specific/linux/kernel/hardened-config.nix index 5ae128741129..7e277617b61a 100644 --- a/pkgs/os-specific/linux/kernel/hardened-config.nix +++ b/pkgs/os-specific/linux/kernel/hardened-config.nix @@ -28,7 +28,9 @@ ${optionalString (stdenv.platform.kernelArch == "x86_64") '' # Reduce attack surface by disabling various emulations IA32_EMULATION n X86_X32 n - MODIFY_LDT_SYSCALL? n + ${optionalString (versionOlder version "4.17") '' + MODIFY_LDT_SYSCALL? n + ''} VMAP_STACK y # Catch kernel stack overflows diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index cf6b254ee858..342351b6d93e 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.14.52"; + version = "4.14.54"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0448z0sdwazk2xrwq1zrinv881qhl33f5r2n3pqb07pxnb3jdlm5"; + sha256 = "1imnqkhybb804ibgbpbhz16x9mk1q2qq7yzif88ajff552n445j5"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.16.nix b/pkgs/os-specific/linux/kernel/linux-4.16.nix deleted file mode 100644 index 46d58c5a14dc..000000000000 --- a/pkgs/os-specific/linux/kernel/linux-4.16.nix +++ /dev/null @@ -1,18 +0,0 @@ -{ stdenv, buildPackages, hostPlatform, fetchurl, perl, buildLinux, modDirVersionArg ? null, ... } @ args: - -with stdenv.lib; - -buildLinux (args // rec { - version = "4.16.18"; - - # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; - - # branchVersion needs to be x.y - extraMeta.branch = concatStrings (intersperse "." (take 2 (splitString "." version))); - - src = fetchurl { - url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "089hx2hdd5r558mv8n0c7jciv2nj9v77df0lsplsbxx47dqns0j1"; - }; -} // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.17.nix b/pkgs/os-specific/linux/kernel/linux-4.17.nix index 166a8572cf7a..ed22da7aacd8 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.17.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.17.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.17.3"; + version = "4.17.5"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1z8zja786x5dxwm69zgfkwsvfwjfznwbclf76301c2fd4wjancmg"; + sha256 = "1brfnabv5lprghfyxpdr0b5z2sqdygh50j61swrk6wzzbmk0ci9z"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.4.nix b/pkgs/os-specific/linux/kernel/linux-4.4.nix index 307276d04e70..b4a8ce5c8e04 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.4.nix @@ -1,11 +1,11 @@ { stdenv, buildPackages, hostPlatform, fetchurl, perl, buildLinux, ... } @ args: buildLinux (args // rec { - version = "4.4.138"; + version = "4.4.139"; extraMeta.branch = "4.4"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1vn45hvwk49cfm283yg4j76k7dnn351rg5zy28z3bfp02x7cdyg6"; + sha256 = "0igdsv9ihblmxfsgj646xac5n2bdawmwsr9hwyz6yjld43a5aq5n"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index 287d8c9cf37d..1ef58aecdbcf 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,11 +1,11 @@ { stdenv, buildPackages, hostPlatform, fetchurl, perl, buildLinux, ... } @ args: buildLinux (args // rec { - version = "4.9.110"; + version = "4.9.111"; extraMeta.branch = "4.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0ypaqj9vs2jc4qiss5yyplx09rk55fa3hrlzdkm0x7x7f0x196ip"; + sha256 = "1par6wjpr05k00nj0laxnjr02z75szpzvwv66wb0yn6wb64marjr"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index 5e8059bb4655..4af7647a1a5c 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -1,13 +1,13 @@ { stdenv, buildPackages, hostPlatform, fetchurl, perl, buildLinux, libelf, utillinux, ... } @ args: buildLinux (args // rec { - version = "4.18-rc2"; - modDirVersion = "4.18.0-rc2"; + version = "4.18-rc3"; + modDirVersion = "4.18.0-rc3"; extraMeta.branch = "4.18"; src = fetchurl { url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz"; - sha256 = "04vflzj14wvvkj3lsbabsw0239y58cdd8g5kciqz1ydhdlgifpza"; + sha256 = "1kr9bhvcdp792micjmhl2hwhs5iid1srb4ia8hm4cpy1lnzdgrih"; }; # Should the testing kernels ever be built on Hydra? diff --git a/pkgs/os-specific/linux/nvidia-x11/generic.nix b/pkgs/os-specific/linux/nvidia-x11/generic.nix index 0fe0f3d92c92..b5435f23e71b 100644 --- a/pkgs/os-specific/linux/nvidia-x11/generic.nix +++ b/pkgs/os-specific/linux/nvidia-x11/generic.nix @@ -12,7 +12,7 @@ , patches ? [] }: -{ stdenv, callPackage, callPackage_i686, fetchurl, fetchpatch +{ stdenv, callPackage, pkgsi686Linux, fetchurl, fetchpatch , kernel ? null, xorg, zlib, perl, nukeReferences , # Whether to build the libraries only (i.e. not the kernel module or # nvidia-settings). Used to support 32-bit binaries on 64-bit @@ -70,7 +70,7 @@ let disallowedReferences = optional (!libsOnly) [ kernel.dev ]; passthru = { - settings = (if settings32Bit then callPackage_i686 else callPackage) (import ./settings.nix self settingsSha256) { + settings = (if settings32Bit then pkgsi686Linux.callPackage else callPackage) (import ./settings.nix self settingsSha256) { withGtk2 = preferGtk2; withGtk3 = !preferGtk2; }; diff --git a/pkgs/os-specific/linux/pps-tools/default.nix b/pkgs/os-specific/linux/pps-tools/default.nix new file mode 100644 index 000000000000..e4f7d4b3616e --- /dev/null +++ b/pkgs/os-specific/linux/pps-tools/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + baseName = "pps-tools"; + version = "1.0.2"; + name = "${baseName}-${version}"; + + src = fetchFromGitHub { + owner = "redlab-i"; + repo = "${baseName}"; + rev = "v${version}"; + sha256 = "1yh9g0l59dkq4ci0wbb03qin3c3cizfngmn9jy1vwm5zm6axlxhf"; + }; + + outputs = [ "out" "dev" ]; + + installPhase = '' + mkdir -p $out/bin + mkdir -p $dev/include + mkdir -p $out/{usr/bin,usr/include/sys} + make install DESTDIR=$out + mv $out/usr/bin/* $out/bin + mv $out/usr/include/* $dev/include/ + rm -rf $out/usr/ + ''; + + meta = with stdenv.lib;{ + description = "User-space tools for LinuxPPS"; + homepage = http://linuxpps.org/; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ sorki ]; + }; +} diff --git a/pkgs/os-specific/linux/pscircle/default.nix b/pkgs/os-specific/linux/pscircle/default.nix new file mode 100644 index 000000000000..a334465fb71d --- /dev/null +++ b/pkgs/os-specific/linux/pscircle/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchFromGitLab, meson, pkgconfig, ninja, cairo }: + +stdenv.mkDerivation rec { + name = "pscircle-${version}"; + version = "1.0.0"; + + src = fetchFromGitLab { + owner = "mildlyparallel"; + repo = "pscircle"; + rev = "v${version}"; + sha256 = "188d0db62215pycmx2qfmbbjpmih03vigsz2j448zhsbyxapavv3"; + }; + + buildInputs = [ + meson + pkgconfig + cairo + ninja + ]; + + meta = with stdenv.lib; { + homepage = https://gitlab.com/mildlyparallel/pscircle; + description = "Visualize Linux processes in a form of a radial tree"; + license = licenses.gpl2; + maintainers = [ maintainers.ldesgoui ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/servers/apache-kafka/default.nix b/pkgs/servers/apache-kafka/default.nix index fd9c48f3469e..31cff39cb3e6 100644 --- a/pkgs/servers/apache-kafka/default.nix +++ b/pkgs/servers/apache-kafka/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, jre, makeWrapper, bash, +{ stdenv, fetchurl, jre, makeWrapper, bash, coreutils, gnugrep, gnused, majorVersion ? "1.0" }: let @@ -42,7 +42,7 @@ stdenv.mkDerivation rec { inherit sha256; }; - buildInputs = [ jre makeWrapper bash ]; + buildInputs = [ jre makeWrapper bash gnugrep gnused coreutils ]; installPhase = '' mkdir -p $out @@ -60,7 +60,7 @@ stdenv.mkDerivation rec { wrapProgram $p \ --set JAVA_HOME "${jre}" \ --set KAFKA_LOG_DIR "/tmp/apache-kafka-logs" \ - --prefix PATH : "${bash}/bin" + --prefix PATH : "${bash}/bin:${coreutils}/bin:${gnugrep}/bin:${gnused}/bin" done chmod +x $out/bin\/* ''; diff --git a/pkgs/servers/asterisk/default.nix b/pkgs/servers/asterisk/default.nix index d9c7877978b2..b1d60d8c1456 100644 --- a/pkgs/servers/asterisk/default.nix +++ b/pkgs/servers/asterisk/default.nix @@ -2,7 +2,7 @@ jansson, libxml2, libxslt, ncurses, openssl, sqlite, utillinux, dmidecode, libuuid, newt, lua, speex, - srtp, wget, curl + srtp, wget, curl, iksemel }: let @@ -10,7 +10,7 @@ let inherit version; name = "asterisk-${version}"; - buildInputs = [ jansson libxml2 libxslt ncurses openssl sqlite utillinux dmidecode libuuid newt lua speex srtp wget curl ]; + buildInputs = [ jansson libxml2 libxslt ncurses openssl sqlite utillinux dmidecode libuuid newt lua speex srtp wget curl iksemel ]; patches = [ # We want the Makefile to install the default /var skeleton diff --git a/pkgs/servers/dns/knot-resolver/default.nix b/pkgs/servers/dns/knot-resolver/default.nix index e2db0b860f4c..bfa610b57d8a 100644 --- a/pkgs/servers/dns/knot-resolver/default.nix +++ b/pkgs/servers/dns/knot-resolver/default.nix @@ -12,11 +12,11 @@ inherit (stdenv.lib) optional optionals optionalString concatStringsSep; unwrapped = stdenv.mkDerivation rec { name = "knot-resolver-${version}"; - version = "2.3.0"; + version = "2.4.0"; src = fetchurl { url = "https://secure.nic.cz/files/knot-resolver/${name}.tar.xz"; - sha256 = "2d19c5daf8440bd3d2acd1886b9ede65f04f7753c6fd4618a92a1a4ba3b27a9b"; + sha256 = "8c88c73dd50dad6f371bfc170f49cd374022e59f8005ac1fa6cd99764f72b4d1"; }; outputs = [ "out" "dev" ]; @@ -62,7 +62,11 @@ unwrapped = stdenv.mkDerivation rec { }; wrapped-full = with luajitPackages; let - luaPkgs = [ luasec luasocket ]; # TODO: cqueues and others for http2 module + luaPkgs = [ + luasec luasocket # trust anchor bootstrap, prefill module + lfs # prefill module + # TODO: cqueues and others for http2 module + ]; in runCommand unwrapped.name { nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/foundationdb/default.nix b/pkgs/servers/foundationdb/default.nix index 5ebb510be467..ecefc1d8fabd 100644 --- a/pkgs/servers/foundationdb/default.nix +++ b/pkgs/servers/foundationdb/default.nix @@ -1,17 +1,42 @@ -{ stdenv, fetchurl, fetchFromGitHub +{ stdenv49 +, lib, fetchurl, fetchFromGitHub + , which, findutils, m4, gawk -, python, openjdk, mono58, libressl_2_6 -, boost16x +, python, openjdk, mono58, libressl }: let + # hysterical raisins dictate a version of boost this old. however, + # we luckily do not need to build anything, we just need the header + # files. + boost152 = stdenv49.mkDerivation rec { + name = "boost-headers-1.52.0"; + + src = fetchurl { + url = "mirror://sourceforge/boost/boost_1_52_0.tar.bz2"; + sha256 = "14mc7gsnnahdjaxbbslzk79rc0d12h1i681cd3srdwr3fzynlar2"; + }; + + configurePhase = ":"; + buildPhase = ":"; + installPhase = "mkdir -p $out/include && cp -R boost $out/include/"; + }; + makeFdb = { version , branch - , rev, sha256 + , sha256 + + # the revision can be inferred from the fdb tagging policy + , rev ? "refs/tags/${version}" - # fdb 6.0+ support boost 1.6x+, so default to it - , boost ? boost16x + # in theory newer versions of fdb support newer compilers, but they + # don't :( maybe one day + , stdenv ? stdenv49 + + # in theory newer versions of fdb support newer boost versions, but they + # don't :( maybe one day + , boost ? boost152 }: stdenv.mkDerivation rec { name = "foundationdb-${version}"; inherit version; @@ -23,14 +48,20 @@ let }; nativeBuildInputs = [ gawk which m4 findutils mono58 ]; - buildInputs = [ python openjdk libressl_2_6 boost ]; + buildInputs = [ python openjdk libressl boost ]; patches = - [ ./fix-scm-version.patch - ./ldflags.patch - ]; + [ # For 5.2+, we need a slightly adjusted patch to fix all the ldflags + (if lib.versionAtLeast version "5.2" + then ./ldflags.patch + else ./ldflags-5.1.patch) + ] ++ + # for 6.0+, we do NOT need to apply this version fix, since we can specify + # it ourselves. see configurePhase + (lib.optional (!lib.versionAtLeast version "6.0") ./fix-scm-version.patch); postPatch = '' + # note: this does not do anything for 6.0+ substituteInPlace ./build/scver.mk \ --subst-var-by NIXOS_FDB_VERSION_ID "${rev}" \ --subst-var-by NIXOS_FDB_SCBRANCH "${branch}" @@ -51,7 +82,13 @@ let enableParallelBuilding = true; makeFlags = [ "all" "fdb_c" "fdb_java" "KVRELEASE=1" ]; - configurePhase = ":"; + # on 6.0 and later, we can specify all this information manually + configurePhase = lib.optionalString (lib.versionAtLeast version "6.0") '' + export SOURCE_CONTROL=GIT + export SCBRANCH="${branch}" + export VERSION_ID="${rev}" + ''; + installPhase = '' mkdir -vp $out/{bin,libexec/plugins} $lib/{lib,share/java} $dev/include/foundationdb @@ -85,45 +122,24 @@ let }; }; - # hysterical raisins dictate a version of boost this old. however, - # we luckily do not need to build anything, we just need the header - # files. - boost152 = stdenv.mkDerivation rec { - name = "boost-headers-1.52.0"; - - src = fetchurl { - url = "mirror://sourceforge/boost/boost_1_52_0.tar.bz2"; - sha256 = "14mc7gsnnahdjaxbbslzk79rc0d12h1i681cd3srdwr3fzynlar2"; - }; - - configurePhase = ":"; - buildPhase = ":"; - installPhase = "mkdir -p $out/include && cp -R boost $out/include/"; - }; - in with builtins; { - foundationdb51 = makeFdb { + foundationdb51 = makeFdb rec { version = "5.1.7"; branch = "release-5.1"; - rev = "9ad8d02386d4a6a5efecf898df80f2747695c627"; sha256 = "1rc472ih24f9s5g3xmnlp3v62w206ny0pvvw02bzpix2sdrpbp06"; - boost = boost152; }; foundationdb52 = makeFdb rec { - version = "5.2.0pre1488_${substring 0 8 rev}"; - branch = "master"; - rev = "18f345487ed8d90a5c170d813349fa625cf05b4e"; - sha256 = "0mz30fxj6q99cvjzg39s5zm992i6h2l2cb70lc58bdhsz92dz3vc"; - boost = boost152; + version = "5.2.5"; + branch = "release-5.2"; + sha256 = "00csr4v9cwl9y8r63p73grc6cvhlqmzcniwrf80i0klxv5asg7q7"; }; foundationdb60 = makeFdb rec { - version = "6.0.0pre1636_${substring 0 8 rev}"; + version = "6.0.0pre2227_${substring 0 8 rev}"; branch = "master"; - rev = "1265a7b6d5e632dd562b3012e70f0727979806bd"; - sha256 = "0z1i5bkbszsbn8cc48rlhr29m54n2s0gq3dln0n7f97gf58mi5yf"; + rev = "8caa6eaecf1eeec0298fc77db334761b0c1d1523"; + sha256 = "1q200rpsphl5fzwzp2vk7ifgsnqh95k0xfiicfi1c8253ylnsgll"; }; - } diff --git a/pkgs/servers/foundationdb/ldflags-5.1.patch b/pkgs/servers/foundationdb/ldflags-5.1.patch new file mode 100644 index 000000000000..4d523a7ecdd3 --- /dev/null +++ b/pkgs/servers/foundationdb/ldflags-5.1.patch @@ -0,0 +1,90 @@ +diff --git a/FDBLibTLS/local.mk b/FDBLibTLS/local.mk +index 0b6eac8..b1891ca 100644 +--- a/FDBLibTLS/local.mk ++++ b/FDBLibTLS/local.mk +@@ -1,6 +1,5 @@ + FDBLibTLS_CFLAGS := -fPIC -I/usr/local/include -I$(BOOSTDIR) +-FDBLibTLS_STATIC_LIBS := -ltls -lssl -lcrypto +-FDBLibTLS_LDFLAGS := -L/usr/local/lib -static-libstdc++ -static-libgcc -lrt ++FDBLibTLS_LDFLAGS := -L/usr/local/lib -static-libstdc++ -static-libgcc -lrt -ltls -lssl -lcrypto + FDBLibTLS_LDFLAGS += -Wl,-soname,FDBLibTLS.so -Wl,--version-script=FDBLibTLS/FDBLibTLS.map + + # The plugin isn't a typical library, so it feels more sensible to have a copy +diff --git a/bindings/c/local.mk b/bindings/c/local.mk +index 44f0c31..7aea5a4 100644 +--- a/bindings/c/local.mk ++++ b/bindings/c/local.mk +@@ -29,8 +29,8 @@ fdb_c_tests_HEADERS := -Ibindings/c + CLEAN_TARGETS += fdb_c_tests_clean + + ifeq ($(PLATFORM),linux) +- fdb_c_LIBS += lib/libstdc++.a -lm -lpthread -lrt -ldl +- fdb_c_LDFLAGS += -Wl,--version-script=bindings/c/fdb_c.map -static-libgcc -Wl,-z,nodelete ++ fdb_c_LIBS += lib/libstdc++.a ++ fdb_c_LDFLAGS += -Wl,--version-script=bindings/c/fdb_c.map -static-libgcc -Wl,-z,nodelete -lm -lpthread -lrt -ldl + fdb_c_tests_LIBS += -lpthread + endif + +diff --git a/bindings/flow/tester/local.mk b/bindings/flow/tester/local.mk +index 2ef4fcb..6e59625 100644 +--- a/bindings/flow/tester/local.mk ++++ b/bindings/flow/tester/local.mk +@@ -35,8 +35,7 @@ _fdb_flow_tester_clean: + @rm -rf bindings/flow/bin + + ifeq ($(PLATFORM),linux) +- fdb_flow_tester_LIBS += -ldl -lpthread -lrt +- fdb_flow_tester_LDFLAGS += -static-libstdc++ -static-libgcc ++ fdb_flow_tester_LDFLAGS += -static-libstdc++ -static-libgcc -ldl -lpthread -lrt + else ifeq ($(PLATFORM),osx) + fdb_flow_tester_LDFLAGS += -lc++ + endif +diff --git a/fdbbackup/local.mk b/fdbbackup/local.mk +index 033fe7d..865fc92 100644 +--- a/fdbbackup/local.mk ++++ b/fdbbackup/local.mk +@@ -25,8 +25,7 @@ fdbbackup_LDFLAGS := $(fdbrpc_LDFLAGS) + fdbbackup_LIBS := lib/libfdbclient.a lib/libfdbrpc.a lib/libflow.a + + ifeq ($(PLATFORM),linux) +- fdbbackup_LIBS += -ldl -lpthread -lrt +- fdbbackup_LDFLAGS += -static-libstdc++ -static-libgcc ++ fdbbackup_LDFLAGS += -static-libstdc++ -static-libgcc -ldl -lpthread -lrt + + # GPerfTools profiler (uncomment to use) + # fdbbackup_CFLAGS += -I/opt/gperftools/include -DUSE_GPERFTOOLS=1 +diff --git a/fdbcli/local.mk b/fdbcli/local.mk +index 81a4a42..892c079 100644 +--- a/fdbcli/local.mk ++++ b/fdbcli/local.mk +@@ -22,14 +22,13 @@ + + fdbcli_CFLAGS := $(fdbclient_CFLAGS) + fdbcli_LDFLAGS := $(fdbrpc_LDFLAGS) +-fdbcli_LIBS := lib/libfdbclient.a lib/libfdbrpc.a lib/libflow.a -ldl ++fdbcli_LIBS := lib/libfdbclient.a lib/libfdbrpc.a lib/libflow.a + fdbcli_STATIC_LIBS := + + fdbcli_GENERATED_SOURCES += versions.h + + ifeq ($(PLATFORM),linux) +- fdbcli_LDFLAGS += -static-libstdc++ -static-libgcc +- fdbcli_LIBS += -lpthread -lrt ++ fdbcli_LDFLAGS += -static-libstdc++ -static-libgcc -lpthread -lrt -ldl + else ifeq ($(PLATFORM),osx) + fdbcli_LDFLAGS += -lc++ + endif +diff --git a/fdbserver/local.mk b/fdbserver/local.mk +index 78cad1b..36f2c0f 100644 +--- a/fdbserver/local.mk ++++ b/fdbserver/local.mk +@@ -25,8 +25,7 @@ fdbserver_LDFLAGS := $(fdbrpc_LDFLAGS) + fdbserver_LIBS := lib/libfdbclient.a lib/libfdbrpc.a lib/libflow.a + + ifeq ($(PLATFORM),linux) +- fdbserver_LIBS += -ldl -lpthread -lrt +- fdbserver_LDFLAGS += -static-libstdc++ -static-libgcc ++ fdbserver_LDFLAGS += -static-libstdc++ -static-libgcc -ldl -lpthread -lrt + + # GPerfTools profiler (uncomment to use) + # fdbserver_CFLAGS += -I/opt/gperftools/include -DUSE_GPERFTOOLS=1 diff --git a/pkgs/servers/foundationdb/ldflags.patch b/pkgs/servers/foundationdb/ldflags.patch index 4d523a7ecdd3..ee5911e495f8 100644 --- a/pkgs/servers/foundationdb/ldflags.patch +++ b/pkgs/servers/foundationdb/ldflags.patch @@ -1,9 +1,9 @@ diff --git a/FDBLibTLS/local.mk b/FDBLibTLS/local.mk -index 0b6eac8..b1891ca 100644 +index 5e6b9cfb..73f4e5f3 100644 --- a/FDBLibTLS/local.mk +++ b/FDBLibTLS/local.mk @@ -1,6 +1,5 @@ - FDBLibTLS_CFLAGS := -fPIC -I/usr/local/include -I$(BOOSTDIR) + FDBLibTLS_CFLAGS := -fPIC -I/usr/local/include -I$(BOOSTDIR) -Ifdbrpc -FDBLibTLS_STATIC_LIBS := -ltls -lssl -lcrypto -FDBLibTLS_LDFLAGS := -L/usr/local/lib -static-libstdc++ -static-libgcc -lrt +FDBLibTLS_LDFLAGS := -L/usr/local/lib -static-libstdc++ -static-libgcc -lrt -ltls -lssl -lcrypto @@ -11,7 +11,7 @@ index 0b6eac8..b1891ca 100644 # The plugin isn't a typical library, so it feels more sensible to have a copy diff --git a/bindings/c/local.mk b/bindings/c/local.mk -index 44f0c31..7aea5a4 100644 +index 44f0c31b..7aea5a4f 100644 --- a/bindings/c/local.mk +++ b/bindings/c/local.mk @@ -29,8 +29,8 @@ fdb_c_tests_HEADERS := -Ibindings/c @@ -26,7 +26,7 @@ index 44f0c31..7aea5a4 100644 endif diff --git a/bindings/flow/tester/local.mk b/bindings/flow/tester/local.mk -index 2ef4fcb..6e59625 100644 +index 2ef4fcb7..6e59625c 100644 --- a/bindings/flow/tester/local.mk +++ b/bindings/flow/tester/local.mk @@ -35,8 +35,7 @@ _fdb_flow_tester_clean: @@ -40,7 +40,7 @@ index 2ef4fcb..6e59625 100644 fdb_flow_tester_LDFLAGS += -lc++ endif diff --git a/fdbbackup/local.mk b/fdbbackup/local.mk -index 033fe7d..865fc92 100644 +index 033fe7d4..865fc923 100644 --- a/fdbbackup/local.mk +++ b/fdbbackup/local.mk @@ -25,8 +25,7 @@ fdbbackup_LDFLAGS := $(fdbrpc_LDFLAGS) @@ -54,7 +54,7 @@ index 033fe7d..865fc92 100644 # GPerfTools profiler (uncomment to use) # fdbbackup_CFLAGS += -I/opt/gperftools/include -DUSE_GPERFTOOLS=1 diff --git a/fdbcli/local.mk b/fdbcli/local.mk -index 81a4a42..892c079 100644 +index 81a4a42e..892c079c 100644 --- a/fdbcli/local.mk +++ b/fdbcli/local.mk @@ -22,14 +22,13 @@ @@ -75,7 +75,7 @@ index 81a4a42..892c079 100644 fdbcli_LDFLAGS += -lc++ endif diff --git a/fdbserver/local.mk b/fdbserver/local.mk -index 78cad1b..36f2c0f 100644 +index 78cad1bf..36f2c0f7 100644 --- a/fdbserver/local.mk +++ b/fdbserver/local.mk @@ -25,8 +25,7 @@ fdbserver_LDFLAGS := $(fdbrpc_LDFLAGS) diff --git a/pkgs/servers/gpsd/0002-scons-envs-patch.patch b/pkgs/servers/gpsd/0002-scons-envs-patch.patch new file mode 100644 index 000000000000..fbb06db6aa39 --- /dev/null +++ b/pkgs/servers/gpsd/0002-scons-envs-patch.patch @@ -0,0 +1,11 @@ +--- b/SConstruct 2018-07-03 23:13:51.986746857 +0200 ++++ a/SConstruct 2018-07-03 23:14:50.495252914 +0200 +@@ -221,7 +221,7 @@ + 'STAGING_PREFIX', # Required by the OpenWRT and CeroWrt builds. + 'WRITE_PAD', # So we can test WRITE_PAD values on the fly. + ) +-envs = {} ++envs = os.environ + for var in import_env: + if var in os.environ: + envs[var] = os.environ[var] diff --git a/pkgs/servers/gpsd/default.nix b/pkgs/servers/gpsd/default.nix index 911f3b23f0c1..6e270192063b 100644 --- a/pkgs/servers/gpsd/default.nix +++ b/pkgs/servers/gpsd/default.nix @@ -2,6 +2,7 @@ , ncurses, libX11, libXt, libXpm, libXaw, libXext , libusb1, docbook_xml_dtd_412, docbook_xsl, bc , libxslt, xmlto, gpsdUser ? "gpsd", gpsdGroup ? "dialout" +, pps-tools , python2Packages }: @@ -23,7 +24,7 @@ stdenv.mkDerivation rec { buildInputs = [ python2Packages.python dbus dbus-glib ncurses libX11 libXt libXpm libXaw libXext - libxslt libusb1 + libxslt libusb1 pps-tools ]; pythonPath = [ @@ -37,6 +38,8 @@ stdenv.mkDerivation rec { # TODO: remove the patch with the next release ./0001-Use-pkgconfig-for-dbus-library.patch + # to be able to find pps-tools + ./0002-scons-envs-patch.patch ]; # - leapfetch=no disables going online at build time to fetch leap-seconds @@ -44,9 +47,15 @@ stdenv.mkDerivation rec { buildPhase = '' patchShebangs . sed -e "s|systemd_dir = .*|systemd_dir = '$out/lib/systemd/system'|" -i SConstruct - scons prefix="$out" leapfetch=no gpsd_user=${gpsdUser} gpsd_group=${gpsdGroup} \ - systemd=yes udevdir="$out/lib/udev" \ - python_libdir="$out/lib/${python2Packages.python.libPrefix}/site-packages" + scons \ + -j $NIX_BUILD_CORES \ + prefix="$out" \ + leapfetch=no \ + gpsd_user=${gpsdUser} \ + gpsd_group=${gpsdGroup} \ + systemd=yes \ + udevdir="$out/lib/udev" \ + python_libdir="$out/lib/${python2Packages.python.libPrefix}/site-packages" ''; checkPhase = '' diff --git a/pkgs/servers/http/nginx/generic.nix b/pkgs/servers/http/nginx/generic.nix index 1466e7b2246a..448695930039 100644 --- a/pkgs/servers/http/nginx/generic.nix +++ b/pkgs/servers/http/nginx/generic.nix @@ -1,5 +1,6 @@ { stdenv, fetchurl, fetchFromGitHub, openssl, zlib, pcre, libxml2, libxslt, expat , gd, geoip +, withDebug ? false , withStream ? true , withMail ? false , modules ? [] @@ -44,6 +45,8 @@ stdenv.mkDerivation { "--with-pcre-jit" # Install destination problems # "--with-http_perl_module" + ] ++ optional withDebug [ + "--with-debug" ] ++ optional withStream [ "--with-stream" "--with-stream_geoip_module" @@ -64,6 +67,8 @@ stdenv.mkDerivation { hardeningEnable = optional (!stdenv.isDarwin) "pie"; + enableParallelBuilding = true; + postInstall = '' mv $out/sbin $out/bin ''; diff --git a/pkgs/servers/http/yaws/default.nix b/pkgs/servers/http/yaws/default.nix index aae4589ebbe8..5f92fbf2c03f 100644 --- a/pkgs/servers/http/yaws/default.nix +++ b/pkgs/servers/http/yaws/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "yaws-${version}"; - version = "2.0.5"; + version = "2.0.6"; src = fetchurl { url = "http://yaws.hyber.org/download/${name}.tar.gz"; - sha256 = "00bnvf26xlhm3v3c6jzk5kcdk8jkwr1gbd2f4h329lyrpjsx30my"; + sha256 = "03nh97g7smsgm6sw5asssmlq7zgx6y2gnn7jn0lv2x5mkf5nzyb9"; }; # The tarball includes a symlink yaws -> yaws-1.95, which seems to be diff --git a/pkgs/servers/livepeer/default.nix b/pkgs/servers/livepeer/default.nix new file mode 100644 index 000000000000..105223f31a5b --- /dev/null +++ b/pkgs/servers/livepeer/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchFromGitHub, buildGoPackage +, pkgconfig, ffmpeg +}: + +buildGoPackage rec { + name = "livepeer-${version}"; + version = "0.2.4"; + + goPackagePath = "github.com/livepeer/go-livepeer"; + goDeps = ./deps.nix; + + src = fetchFromGitHub { + owner = "livepeer"; + repo = "go-livepeer"; + rev = version; + sha256 = "07vhw787wq5q4xm7zvswjdsmr20pwfa39wfkgamb7hkrffn3k2ia"; + }; + + buildInputs = [ pkgconfig ffmpeg ]; + + # XXX This removes the -O2 flag, to avoid errors like: + # cgo-dwarf-inference:2:8: error: enumerator value for '__cgo_enum__0' is not an integer constant + # This is a workaround for nixpkgs+golang BUG https://github.com/NixOS/nixpkgs/issues/25959 + hardeningDisable = [ "fortify" ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Official Go implementation of the Livepeer protocol"; + homepage = http://livepeer.org; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ elitak ]; + }; +} diff --git a/pkgs/servers/livepeer/deps.nix b/pkgs/servers/livepeer/deps.nix new file mode 100644 index 000000000000..297d0724a496 --- /dev/null +++ b/pkgs/servers/livepeer/deps.nix @@ -0,0 +1,20 @@ +[ + { + goPackagePath = "github.com/golang/glog"; + fetch = { + type = "git"; + url = "https://github.com/golang/glog"; + rev = "23def4e6c14b4da8ac2ed8007337bc5eb5007998"; + sha256 = "0jb2834rw5sykfr937fxi8hxi2zy80sj2bdn9b3jb4b26ksqng30"; + }; + } + { + goPackagePath = "github.com/ericxtang/m3u8"; + fetch = { + type = "git"; + url = "https://github.com/ericxtang/m3u8"; + rev = "575aeb9f754a5dabcc03d4aa0ed05ecaee26499e"; + sha256 = "08811y4kg6rgj40v80cwjcwhy094qrfigdwjsgr8d6bn64cf9fz2"; + }; + } +] diff --git a/pkgs/servers/mail/rspamd/default.nix b/pkgs/servers/mail/rspamd/default.nix index 3e3132798068..4de63d694667 100644 --- a/pkgs/servers/mail/rspamd/default.nix +++ b/pkgs/servers/mail/rspamd/default.nix @@ -6,29 +6,25 @@ in stdenv.mkDerivation rec { name = "rspamd-${version}"; - version = "1.6.6"; + version = "1.7.3"; src = fetchFromGitHub { owner = "vstakhov"; repo = "rspamd"; rev = version; - sha256 = "04jqrki7rlxywdig264kavy1h5882rspi2drkbdzrk35jjq8rh3h"; + sha256 = "1gb4zg8i1nj337f65s434h299ad19c0d7jyawb2glvv3n4cshm97"; }; nativeBuildInputs = [ cmake pkgconfig perl ]; - buildInputs = [ glib gmime libevent libmagic luajit openssl pcre sqlite ragel icu libfann]; + buildInputs = [ glib gmime libevent libmagic luajit openssl pcre sqlite ragel icu libfann ]; - postPatch = '' - substituteInPlace conf/common.conf --replace "\$CONFDIR/rspamd.conf.local" "/etc/rspamd/rspamd.conf.local" - substituteInPlace conf/common.conf --replace "\$CONFDIR/rspamd.conf.local.override" "/etc/rspamd/rspamd.conf.local.override" - ''; - - cmakeFlags = '' - -DDEBIAN_BUILD=ON - -DRUNDIR=/var/run/rspamd - -DDBDIR=/var/lib/rspamd - -DLOGDIR=/var/log/rspamd - ''; + cmakeFlags = [ + "-DDEBIAN_BUILD=ON" + "-DRUNDIR=/var/run/rspamd" + "-DDBDIR=/var/lib/rspamd" + "-DLOGDIR=/var/log/rspamd" + "-DLOCAL_CONFDIR=/etc/rspamd" + ]; meta = with stdenv.lib; { homepage = https://github.com/vstakhov/rspamd; diff --git a/pkgs/servers/meguca/default.nix b/pkgs/servers/meguca/default.nix index bfe21543555d..67b2685262d8 100644 --- a/pkgs/servers/meguca/default.nix +++ b/pkgs/servers/meguca/default.nix @@ -1,35 +1,40 @@ -{ stdenv, buildGoPackage, fetchgit, pkgconfig, ffmpeg-full, graphicsmagick, ghostscript, quicktemplate, - go-bindata, easyjson, nodePackages, cmake, emscripten }: +{ stdenv, buildGoPackage, fetchgit, pkgconfig, cmake, ffmpeg-full, ghostscript +, graphicsmagick, quicktemplate, go-bindata, easyjson, nodePackages, emscripten }: buildGoPackage rec { name = "meguca-unstable-${version}"; - version = "2018-05-26"; - rev = "9f3d902fb899dbc874c1a91298d86fda7da59b1e"; + version = "2018-07-01"; + rev = "80db8298b6546c93944251c17fe03371e521671f"; goPackagePath = "github.com/bakape/meguca"; goDeps = ./server_deps.nix; - enableParallelBuilding = true; - nativeBuildInputs = [ pkgconfig cmake ]; - buildInputs = [ ffmpeg-full graphicsmagick ghostscript quicktemplate go-bindata easyjson emscripten ]; src = fetchgit { inherit rev; url = "https://github.com/bakape/meguca"; - sha256 = "0qblllf23pxcwi5fhaq8xc77iawll7v7xpk2mf9ngks3h8p7gddq"; + sha256 = "1yix0kxsjm9f3zw9jx2nb3pl8pbqjfhbvbrz42m1h20b1h02s5ml"; fetchSubmodules = true; }; - configurePhase = '' + enableParallelBuilding = true; + nativeBuildInputs = [ pkgconfig cmake ]; + + buildInputs = [ + ffmpeg-full graphicsmagick ghostscript quicktemplate go-bindata easyjson + emscripten + ]; + + buildPhase = '' export HOME=$PWD - export GOPATH=$GOPATH:$HOME/go + export GOPATH=$GOPATH:$HOME/go/src/github.com/bakape/meguca/go + cd $HOME/go/src/github.com/bakape/meguca ln -sf ${nodePackages.meguca}/lib/node_modules/meguca/node_modules sed -i "/npm install --progress false --depth 0/d" Makefile make generate_clean go generate meguca/... - ''; - - buildPhase = '' - go build -p $NIX_BUILD_CORES meguca - make -j $NIX_BUILD_CORES client wasm + go build -v -p $NIX_BUILD_CORES meguca + make -j $NIX_BUILD_CORES client + '' + stdenv.lib.optionalString (!stdenv.isDarwin) '' + make -j $NIX_BUILD_CORES wasm ''; installPhase = '' @@ -40,7 +45,7 @@ buildGoPackage rec { meta = with stdenv.lib; { homepage = "https://github.com/bakape/meguca"; - description = "Anonymous realtime imageboard focused on high performance, free speech and transparent moderation"; + description = "High performance anonymous realtime imageboard"; license = licenses.agpl3Plus; maintainers = with maintainers; [ chiiruno ]; platforms = platforms.all; diff --git a/pkgs/servers/meguca/server_deps.nix b/pkgs/servers/meguca/server_deps.nix index 493297b9757f..b2e31515ab48 100644 --- a/pkgs/servers/meguca/server_deps.nix +++ b/pkgs/servers/meguca/server_deps.nix @@ -1,12 +1,21 @@ # This file was generated by https://github.com/kamilchm/go2nix v1.2.1 [ { + goPackagePath = "github.com/ErikDubbelboer/gspt"; + fetch = { + type = "git"; + url = "https://github.com/ErikDubbelboer/gspt"; + rev = "08ed213262b5bb2cf6ccb0baa71c6b201d353e63"; + sha256 = "1vdgvwjagk1n4mwvpil59idgg7ibdj6frk9mz8c2ckbmxsfpp8rq"; + }; + } + { goPackagePath = "github.com/Masterminds/squirrel"; fetch = { type = "git"; url = "https://github.com/Masterminds/squirrel"; - rev = "40ef4f86bf59a996c348a9f56ddb4c4d3d49a6df"; - sha256 = "1zdv8hds2skqz9xrybf1pw5hfxzd27c35fsrfq11ryif1wxwbkyp"; + rev = "b127ed9be03443fe3c0877e391130e3dd3f3107a"; + sha256 = "04vgwm5g5486188656hiw1x56mrkv27s5g2s8mc1lz7z1ig5g5bg"; }; } { @@ -28,6 +37,15 @@ }; } { + goPackagePath = "github.com/badoux/goscraper"; + fetch = { + type = "git"; + url = "https://github.com/badoux/goscraper"; + rev = "0213ced7087832e81e8892e8d044150cfc153856"; + sha256 = "0bw5g6h0hypd38z8gfbh40pbw824n4qhk3c0kasw6gn4darx972w"; + }; + } + { goPackagePath = "github.com/bakape/mnemonics"; fetch = { type = "git"; @@ -41,8 +59,8 @@ fetch = { type = "git"; url = "https://github.com/bakape/thumbnailer"; - rev = "5b92eb4c4500fd8e004e4cc9eeb2038961e2004f"; - sha256 = "0z9myzp6rjyylh91ibd1nfpz7za1gxg4n3pnn7sw54i9zyws1l4x"; + rev = "fa88f595f3882773bc425b382eee71e3e2fa1291"; + sha256 = "19xfn8aj1nhh5dj93hskzrhaa07sayd8agmz1vkkh6varqrldanf"; }; } { @@ -95,8 +113,8 @@ fetch = { type = "git"; url = "https://github.com/go-playground/log"; - rev = "91a5908e654f9fc444a71ea3c51c72cb5c6c2442"; - sha256 = "0p67j453pi7ffv3axl5g97qadx8lj22vsi5xrzqrr3v6mj8b0lbm"; + rev = "736ecb55f80c7121af3754a7ea62e96733451fe1"; + sha256 = "1gr2658m8nwswiybnz5i54d4gzwx4nk79gnh7j5fj1rcmbxdkkjh"; }; } { @@ -113,8 +131,8 @@ fetch = { type = "git"; url = "https://github.com/gorilla/websocket"; - rev = "21ab95fa12b9bdd8fecf5fa3586aad941cc98785"; - sha256 = "1ygg6cr84461d6k3nzbja0dxhcgf5zvry2w10f6i7291ghrcwhyy"; + rev = "5ed622c449da6d44c3c8329331ff47a9e5844f71"; + sha256 = "1yhcwraijdk6lx7f6m9p6i1b3zfh2hq80l1nfpnckfn10gh72aw7"; }; } { @@ -158,8 +176,8 @@ fetch = { type = "git"; url = "https://github.com/mailru/easyjson"; - rev = "8b799c424f57fa123fc63a99d6383bc6e4c02578"; - sha256 = "15ba6drfmw98lzw5qjh3ijcxh9iz9rcp3hid169yfd08l06z05w0"; + rev = "3fdea8d05856a0c8df22ed4bc71b3219245e4485"; + sha256 = "0g3crph77yhv4ipdnwqc32z4cp87ahi4ikad5kyy6q4znnxliz74"; }; } { @@ -185,8 +203,8 @@ fetch = { type = "git"; url = "https://github.com/sevlyar/go-daemon"; - rev = "45a2ba1b7c6710a044163fa109bf08d060bc3afa"; - sha256 = "1fd8cwljgbxsm3w38pii0n02zg8s53x7j08w784csj3sfzq7rbv4"; + rev = "f9261e73885de99b1647d68bedadf2b9a99ad11f"; + sha256 = "1c4h85a3qfdkd61k8ipk1ffi3sdflq4wqp6d6h43zrca528m9ddc"; }; } { @@ -221,8 +239,17 @@ fetch = { type = "git"; url = "https://go.googlesource.com/crypto"; - rev = "a3beeb748656e13e54256fd2cde19e058f41f60f"; - sha256 = "0h0a1v2g3hf0dlfjfiv76vfvvy7r9sdhjyqc2snvh9dczm2k5zki"; + rev = "a49355c7e3f8fe157a85be2f77e6e269a0f89602"; + sha256 = "020q1laxjx5kcmnqy4wmdb63zhb0lyq6wpy40axhswzg2nd21s44"; + }; + } + { + goPackagePath = "golang.org/x/net"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/net"; + rev = "4cb1c02c05b0e749b0365f61ae859a8e0cfceed9"; + sha256 = "05xdcj0pn245y3gpy9p5iamx09424zqwh1w34gwwn5kh51ybgv7k"; }; } { @@ -230,8 +257,8 @@ fetch = { type = "git"; url = "https://go.googlesource.com/sys"; - rev = "c11f84a56e43e20a78cee75a7c034031ecf57d1f"; - sha256 = "1fn1wwr94v6ca1zcbsrs5v79s95pajdjqzz9rm9lxkgcvv1rl189"; + rev = "7138fd3d9dc8335c567ca206f4333fb75eb05d56"; + sha256 = "09xgxk0d9b88m18sriy4f2l6qavicznxkgsbvjyv56x24r4kmiq0"; }; } { @@ -239,8 +266,8 @@ fetch = { type = "git"; url = "https://go.googlesource.com/text"; - rev = "5c1cf69b5978e5a34c5f9ba09a83e56acc4b7877"; - sha256 = "03br8p1sb1ffr02l8hyrgcyib7ms0z06wy3v4r1dj2l6q4ghwzfs"; + rev = "c0fe8dde8a10c9b32154bd9bdf080b8b3d635127"; + sha256 = "0zi15k236nmqrlpfy3hgnxnh3f0n1aag0h6gs41xlxdkr9lpmnsz"; }; } { diff --git a/pkgs/servers/monitoring/nagios/default.nix b/pkgs/servers/monitoring/nagios/default.nix index 6191d667bbe9..64fd55f9e5a5 100644 --- a/pkgs/servers/monitoring/nagios/default.nix +++ b/pkgs/servers/monitoring/nagios/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "nagios-${version}"; - version = "4.4.0"; + version = "4.4.1"; src = fetchurl { url = "mirror://sourceforge/nagios/nagios-4.x/${name}/${name}.tar.gz"; - sha256 = "1ldpyk7jxarp52m5vhmrgrgic251ypfzb91hilc0gbmcq9b0l5k6"; + sha256 = "0j09jawjrbp5n7gwyb5mkq7l2dmg6fl03695salral66fs95s8nq"; }; patches = [ ./nagios.patch ]; diff --git a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix index bd291356b436..d965485356c8 100644 --- a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix +++ b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix @@ -3,10 +3,10 @@ let s = # Generated upstream information rec { baseName="apache-jena-fuseki"; - version = "3.7.0"; + version = "3.8.0"; name="${baseName}-${version}"; url="http://archive.apache.org/dist/jena/binaries/apache-jena-fuseki-${version}.tar.gz"; - sha256 = "1824rvdrs9yhjinac2vkvkxvns8bfdvy91k5ghzzk0nrdcj31pmr"; + sha256 = "0jca96996zl3f1qc15sfv45n09rnnv24qxv87y16dnwnyc1ism0a"; }; buildInputs = [ makeWrapper diff --git a/pkgs/servers/radicale/default.nix b/pkgs/servers/radicale/default.nix index 077192fbef0f..b0cfc32e9117 100644 --- a/pkgs/servers/radicale/default.nix +++ b/pkgs/servers/radicale/default.nix @@ -7,7 +7,8 @@ let python = python3.override { packageOverrides = self: super: { - # https://github.com/eventable/vobject/issues/112 + # Packages pinned in setup.py. + # Starting with next release, a vendored version of vobject will be used. python-dateutil = super.python-dateutil.overridePythonAttrs (oldAttrs: rec { version = "2.6.1"; src = oldAttrs.src.override { @@ -15,6 +16,13 @@ let sha256 = "891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca"; }; }); + vobject = super.vobject.overridePythonAttrs (oldAttrs: rec { + version = "0.9.5"; + src = oldAttrs.src.override { + inherit version; + sha256 = "0f56cae196303d875682b9648b4bb43ffc769d2f0f800958e0a506af867b1243"; + }; + }); }; }; diff --git a/pkgs/servers/search/elasticsearch/5.x.nix b/pkgs/servers/search/elasticsearch/5.x.nix index c80bbbcfde91..07ebf97ab2bf 100644 --- a/pkgs/servers/search/elasticsearch/5.x.nix +++ b/pkgs/servers/search/elasticsearch/5.x.nix @@ -27,7 +27,9 @@ stdenv.mkDerivation rec { --set JAVA_HOME "${jre_headless}" \ --set ES_JVM_OPTIONS "$out/config/jvm.options" - wrapProgram $out/bin/elasticsearch-plugin --set JAVA_HOME "${jre_headless}" + wrapProgram $out/bin/elasticsearch-plugin \ + --prefix ES_CLASSPATH : "$out/lib/*" \ + --set JAVA_HOME "${jre_headless}" ''; meta = { diff --git a/pkgs/servers/search/elasticsearch/es-classpath-5.x.patch b/pkgs/servers/search/elasticsearch/es-classpath-5.x.patch index 6898ffcf1d79..ccdca1e53afc 100644 --- a/pkgs/servers/search/elasticsearch/es-classpath-5.x.patch +++ b/pkgs/servers/search/elasticsearch/es-classpath-5.x.patch @@ -32,3 +32,12 @@ diff -rupN a/bin/elasticsearch.in.sh b/bin/elasticsearch.in.sh -fi - -ES_CLASSPATH="$ES_HOME/lib/*" +diff -rupN a/bin/elasticsearch-plugin b/bin/elasticsearch-plugin +--- a/bin/elasticsearch-plugin 2018-04-13 01:21:55.000000000 +0900 ++++ b/bin/elasticsearch-plugin 2018-06-28 19:08:54.700969245 +0900 +@@ -88,4 +88,4 @@ if [ -e "$CONF_DIR" ]; then + path_props=("${path_props[@]}" -Des.path.conf="$CONF_DIR") + fi + +-exec "$JAVA" $ES_JAVA_OPTS -Delasticsearch "${path_props[@]}" -cp "$ES_HOME/lib/*" org.elasticsearch.plugins.PluginCli "${args[@]}" ++exec "$JAVA" $ES_JAVA_OPTS -Delasticsearch "${path_props[@]}" -cp "$ES_CLASSPATH" org.elasticsearch.plugins.PluginCli "${args[@]}" diff --git a/pkgs/servers/sonarr/default.nix b/pkgs/servers/sonarr/default.nix index 552f0fb4537c..6e78a84b4c7d 100644 --- a/pkgs/servers/sonarr/default.nix +++ b/pkgs/servers/sonarr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "sonarr-${version}"; - version = "2.0.0.5163"; + version = "2.0.0.5228"; src = fetchurl { url = "https://download.sonarr.tv/v2/master/mono/NzbDrone.master.${version}.mono.tar.gz"; - sha256 = "037rs0cb7dfiblfy02x2l4amv9dmx1wiz5pa97vpczfgk5gq99y3"; + sha256 = "0nys6livqzdn19f9qazs6w9mz35d1wj2f2fgcrccshrbwafrxdw1"; }; buildInputs = [ diff --git a/pkgs/servers/web-apps/selfoss/default.nix b/pkgs/servers/web-apps/selfoss/default.nix index 4ed9d96510c8..615efa3b3672 100644 --- a/pkgs/servers/web-apps/selfoss/default.nix +++ b/pkgs/servers/web-apps/selfoss/default.nix @@ -19,10 +19,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Web-based news feed (RSS/Atom) aggregator"; + homepage = https://selfoss.aditu.de; license = licenses.gpl3; - homepage = http://http://selfoss.aditu.de/; + maintainers = with maintainers; [ jtojnar regnat ]; platforms = platforms.all; - maintainers = [ maintainers.regnat ]; }; } - diff --git a/pkgs/servers/web-apps/shaarli/default.nix b/pkgs/servers/web-apps/shaarli/default.nix index 8f6722ed86ec..cee098db6b27 100644 --- a/pkgs/servers/web-apps/shaarli/default.nix +++ b/pkgs/servers/web-apps/shaarli/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "shaarli-${version}"; - version = "0.9.6"; + version = "0.9.7"; src = fetchurl { url = "https://github.com/shaarli/Shaarli/releases/download/v${version}/shaarli-v${version}-full.tar.gz"; - sha256 = "0vi59988bjxb1cyifh0fynpxa7l6cl0v57hrxima5c9iid10pw54"; + sha256 = "191nnk4p6cpbljij1a30mpidqdvcwn1x6ndb4lgkqwbpnh86q57l"; }; outputs = [ "out" "doc" ]; diff --git a/pkgs/servers/x11/xorg/default.nix b/pkgs/servers/x11/xorg/default.nix index 5e228ccba369..1c4201c0082a 100644 --- a/pkgs/servers/x11/xorg/default.nix +++ b/pkgs/servers/x11/xorg/default.nix @@ -1424,11 +1424,11 @@ let }) // {inherit libX11 libXau libXext libXmu xproto ;}; xbacklight = (mkDerivation "xbacklight" { - name = "xbacklight-1.2.1"; + name = "xbacklight-1.2.2"; builder = ./builder.sh; src = fetchurl { - url = mirror://xorg/individual/app/xbacklight-1.2.1.tar.bz2; - sha256 = "0arnd1j8vzhzmw72mqhjjcb2qwcbs9qphsy3ps593ajyld8wzxhp"; + url = mirror://xorg/individual/app/xbacklight-1.2.2.tar.bz2; + sha256 = "0pmzaz4kp38qv2lqiw5rnqhwzmwrq65m1x5j001mmv99wh9isnk1"; }; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ libxcb xcbutil ]; diff --git a/pkgs/servers/zookeeper/default.nix b/pkgs/servers/zookeeper/default.nix index c382061f1ef6..6a657cc634f3 100644 --- a/pkgs/servers/zookeeper/default.nix +++ b/pkgs/servers/zookeeper/default.nix @@ -18,7 +18,8 @@ stdenv.mkDerivation rec { cp -R conf docs lib ${name}.jar $out mkdir -p $out/bin cp -R bin/{zkCli,zkCleanup,zkEnv,zkServer}.sh $out/bin - for i in $out/bin/{zkCli,zkCleanup}.sh; do + patchShebangs $out/bin + for i in $out/bin/{zkCli,zkCleanup,zkServer}.sh; do wrapProgram $i \ --set JAVA_HOME "${jre}" \ --prefix PATH : "${bash}/bin" diff --git a/pkgs/shells/xonsh/default.nix b/pkgs/shells/xonsh/default.nix index 20f39f40a240..6522985ab864 100644 --- a/pkgs/shells/xonsh/default.nix +++ b/pkgs/shells/xonsh/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonApplication rec { name = "xonsh-${version}"; - version = "0.6.7"; + version = "0.6.8"; src = fetchFromGitHub { owner = "scopatz"; repo = "xonsh"; rev = version; - sha256= "0vxdfq1wpajfypdl5lhvib50mk742dk8y375zf3h057hjb0khhgw"; + sha256= "1a74xpww7k432b2z44388rl31nqvckn2q3fswci04f48698hzs5l"; }; LC_ALL = "en_US.UTF-8"; diff --git a/pkgs/shells/zsh/gradle-completion/default.nix b/pkgs/shells/zsh/gradle-completion/default.nix new file mode 100644 index 000000000000..9a3f5ec3cc49 --- /dev/null +++ b/pkgs/shells/zsh/gradle-completion/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + name = "gradle-completion-${version}"; + version = "1.3.1"; + + src = fetchFromGitHub { + owner = "gradle"; + repo = "gradle-completion"; + rev = "v${version}"; + sha256 = "02vv360r78ckwc6r4xbhmy5dxz6l9ya4lq9c62zh12ciq94y9kgx"; + }; + + # we just move two files into $out, + # this shouldn't bother Hydra. + preferLocalBuild = true; + + dontBuild = true; + installPhase = '' + runHook preInstall + + mkdir -p $out + install -Dm0644 ./_gradle $out/share/zsh/site-functions/_gradle + install -Dm0644 ./gradle-completion.bash $out/share/bash-completion/completions/gradle + + runHook postInstall + ''; + + meta = with stdenv.lib; { + description = "Gradle tab completion for bash and zsh"; + homepage = https://github.com/gradle/gradle-completion; + license = licenses.mit; + maintainers = with maintainers; [ ma27 ]; + }; +} diff --git a/pkgs/tools/X11/xpra/default.nix b/pkgs/tools/X11/xpra/default.nix index 5ddc2432bd50..7523bab2e8c3 100644 --- a/pkgs/tools/X11/xpra/default.nix +++ b/pkgs/tools/X11/xpra/default.nix @@ -12,11 +12,11 @@ let inherit (python2Packages) python cython buildPythonApplication; in buildPythonApplication rec { name = "xpra-${version}"; - version = "2.3.1"; + version = "2.3.2"; src = fetchurl { url = "https://xpra.org/src/${name}.tar.xz"; - sha256 = "0wghjmrw77pkh6agc5rz7ynr6s8yyc68qvj9rnp0vlwa3x1fl3ry"; + sha256 = "02wpnlx43dwacaahpm8db5kbnjw2msm3ycq71gib0n2zamd71ni6"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/tools/admin/adtool/default.nix b/pkgs/tools/admin/adtool/default.nix new file mode 100644 index 000000000000..7ece3acbd679 --- /dev/null +++ b/pkgs/tools/admin/adtool/default.nix @@ -0,0 +1,39 @@ +{ stdenv, fetchurl, openldap }: + +stdenv.mkDerivation rec { + name = "adtool-${version}"; + version = "1.3.3"; + + src = fetchurl { + url = "https://gp2x.org/adtool/${name}.tar.gz"; + sha256 = "1awmpjamrwivi69i0j2fyrziy9s096ckviqd9c4llc3990mfsn4n"; + }; + + configureFlags = [ + "--sysconfdir=/etc" + ]; + + installFlags = [ + "sysconfdir=$(out)/etc" + ]; + + buildInputs = [ openldap ]; + + enableParallelBuilding = true; + + postInstall = '' + mkdir -p $out/share/doc/adtool + mv $out/etc/* $out/share/doc/adtool + rmdir $out/etc + ''; + + # It requires an LDAP server for tests + doCheck = false; + + meta = with stdenv.lib; { + description = "Active Directory administration utility for Unix"; + homepage = https://gp2x.org/adtool; + license = licenses.gpl2; + maintainers = with maintainers; [ peterhoeg ]; + }; +} diff --git a/pkgs/tools/admin/awscli/default.nix b/pkgs/tools/admin/awscli/default.nix index 4e7e2d402e90..b7d41ac7a960 100644 --- a/pkgs/tools/admin/awscli/default.nix +++ b/pkgs/tools/admin/awscli/default.nix @@ -19,11 +19,11 @@ let in py.pkgs.buildPythonApplication rec { pname = "awscli"; - version = "1.15.10"; + version = "1.15.49"; src = py.pkgs.fetchPypi { inherit pname version; - sha256 = "0nwpanbfx5h0bad8wwvvbhpjf9r6n885bbv2w8mw7vijdgclkq8x"; + sha256 = "1rn1d274vg2zq93cswh6w5ybgqw6gk2pgiqxhsyd04f2v4smr98i"; }; # No tests included diff --git a/pkgs/tools/admin/salt/default.nix b/pkgs/tools/admin/salt/default.nix index ef43ba2ba517..80df9148220c 100644 --- a/pkgs/tools/admin/salt/default.nix +++ b/pkgs/tools/admin/salt/default.nix @@ -6,30 +6,19 @@ extraInputs ? [] }: -let - # Use tornado-4.x until https://github.com/saltstack/salt/issues/45790 is resolved - tornado = pythonPackages.tornado.overridePythonAttrs (oldAttrs: rec { - version = "4.5.3"; - name = "${oldAttrs.pname}-${version}"; - src = oldAttrs.src.override { - inherit version; - sha256 = "02jzd23l4r6fswmwxaica9ldlyc2p6q8dk6dyff7j58fmdzf853d"; - }; - }); -in pythonPackages.buildPythonApplication rec { pname = "salt"; - version = "2018.3.0"; + version = "2018.3.2"; src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "0cbbnmaynnpfknmppzlz04mqw4d3d2ay1dqrli11b5pnzli5v950"; + sha256 = "d86eeea2e5387f4a64bbf0a11d103bfc8aac1122e19d39cc0945d33efdc797bd"; }; propagatedBuildInputs = with pythonPackages; [ jinja2 markupsafe - msgpack-python + msgpack pycrypto pyyaml pyzmq diff --git a/pkgs/tools/compression/zstd/default.nix b/pkgs/tools/compression/zstd/default.nix index 8fa2d181de5e..edb771b5b3ec 100644 --- a/pkgs/tools/compression/zstd/default.nix +++ b/pkgs/tools/compression/zstd/default.nix @@ -4,10 +4,10 @@ stdenv.mkDerivation rec { name = "zstd-${version}"; - version = "1.3.4"; + version = "1.3.5"; src = fetchFromGitHub { - sha256 = "090ba7dnv5z2v4vlb8b275b0n7cqsdzjqvr3b6a0w65z13mgy2nw"; + sha256 = "0fpv8k16s14g0r552mhbh0mkr716cqy41d2znyrvks6qfphkgir4"; rev = "v${version}"; repo = "zstd"; owner = "facebook"; diff --git a/pkgs/tools/filesystems/gocrypfs/default.nix b/pkgs/tools/filesystems/gocrypfs/default.nix deleted file mode 100644 index b9314015cf55..000000000000 --- a/pkgs/tools/filesystems/gocrypfs/default.nix +++ /dev/null @@ -1,44 +0,0 @@ -# This file was generated by go2nix. -{ stdenv, lib, buildGoPackage, fetchFromGitHub, pkgconfig, openssl }: - -with lib; - -let - goFuseVersion = substring 0 7 (head (filter ( - d: d.goPackagePath == "github.com/hanwen/go-fuse" - ) (import ./deps.nix))).fetch.rev; -in buildGoPackage rec { - name = "gocryptfs-${version}"; - version = "1.1.1"; - rev = "v${version}"; - - goPackagePath = "github.com/rfjakob/gocryptfs"; - - src = fetchFromGitHub { - inherit rev; - owner = "rfjakob"; - repo = "gocryptfs"; - sha256 = "0p173x2s0km7a43h6ihir5p19fdlkkb9lc9120k9hccr33iws25z"; - }; - - nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ openssl]; - - goDeps = ./deps.nix; - - postPatch = "rm -r tests"; - - buildFlagsArray = '' - -ldflags= - -X main.GitVersion=${rev} - -X main.GitVersionFuse=${goFuseVersion} - ''; - - meta = { - description = "Encrypted overlay filesystem written in Go"; - license = licenses.mit; - homepage = https://nuetzlich.net/gocryptfs/; - maintainers = with maintainers; [offline]; - platforms = with platforms; linux; - }; -} diff --git a/pkgs/tools/filesystems/gocrypfs/deps.nix b/pkgs/tools/filesystems/gocrypfs/deps.nix deleted file mode 100644 index 08a4afb52653..000000000000 --- a/pkgs/tools/filesystems/gocrypfs/deps.nix +++ /dev/null @@ -1,39 +0,0 @@ -# This file was generated by go2nix. -[ - { - goPackagePath = "github.com/hanwen/go-fuse"; - fetch = { - type = "git"; - url = "https://github.com/hanwen/go-fuse"; - rev = "6c2b7d8f22c99776f8bfe17cd26d5f744a5b4cdc"; - sha256 = "1mb73vyqfy92830qif83zdlng0zycmm5fgmm9bwihqh92y8inw3h"; - }; - } - { - goPackagePath = "github.com/jacobsa/crypto"; - fetch = { - type = "git"; - url = "https://github.com/jacobsa/crypto"; - rev = "293ce0c192fb4f59cd879b46544922b9ed09a13a"; - sha256 = "12nm5h5dqqk8yrzlkmcqm0aam8l6l1s6rah48mrmz1z5bgm9h5rs"; - }; - } - { - goPackagePath = "github.com/rfjakob/eme"; - fetch = { - type = "git"; - url = "https://github.com/rfjakob/eme"; - rev = "601d0e278ceda9aa2085a61c9265f6e690ef5255"; - sha256 = "1ryh5f2a42psrqcpjh73shk3p0mva2vcyyfav4nhxmfqall77k5z"; - }; - } - { - goPackagePath = "golang.org/x/crypto"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/crypto"; - rev = "88d0005bf4c3ec17306ecaca4281a8d8efd73e91"; - sha256 = "1d3x0rwfd4cml06ka8gy74wxrw94m2z7qgz6ky0rgmxcr7p5iikz"; - }; - } -] diff --git a/pkgs/tools/filesystems/gocryptfs/default.nix b/pkgs/tools/filesystems/gocryptfs/default.nix new file mode 100644 index 000000000000..75f5e9ffe11f --- /dev/null +++ b/pkgs/tools/filesystems/gocryptfs/default.nix @@ -0,0 +1,50 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +{ stdenv, buildGoPackage, fetchFromGitHub, openssl, pandoc, pkgconfig }: + +let + version = "v1.5"; + goFuseVersion = with stdenv.lib; substring 0 7 (head (filter ( + d: d.goPackagePath == "github.com/hanwen/go-fuse" + ) (import ./deps.nix))).fetch.rev; +in +buildGoPackage rec { + name = "gocryptfs-${version}"; + + goPackagePath = "github.com/rfjakob/gocryptfs"; + + nativeBuildInputs = [ pandoc pkgconfig ]; + buildInputs = [ openssl ]; + + src = fetchFromGitHub { + owner = "rfjakob"; + repo = "gocryptfs"; + rev = version; + sha256 = "0s5smjc7n9088n8a2mv7cy3cx31ci13i1i8fhg1vslc17a15qs2d"; + }; + + postPatch = "rm -r tests"; + + buildFlagsArray = '' + -ldflags= + -X main.GitVersion=${version} + -X main.GitVersionFuse=${goFuseVersion} + ''; + + goDeps = ./deps.nix; + + postBuild = '' + pushd go/src/github.com/rfjakob/gocryptfs/Documentation/ + mkdir -p $out/share/man/man1 + pandoc MANPAGE.md -s -t man -o $out/share/man/man1/gocryptfs.1 + pandoc MANPAGE-XRAY.md -s -t man -o $out/share/man/man1/gocryptfs-xray.1 + popd + ''; + + meta = with stdenv.lib; { + description = "Encrypted overlay filesystem written in Go"; + license = licenses.mit; + homepage = https://nuetzlich.net/gocryptfs/; + maintainers = with maintainers; [ flokli offline ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/tools/filesystems/gocryptfs/deps.nix b/pkgs/tools/filesystems/gocryptfs/deps.nix new file mode 100644 index 000000000000..cb5aec527f24 --- /dev/null +++ b/pkgs/tools/filesystems/gocryptfs/deps.nix @@ -0,0 +1,66 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +[ + { + goPackagePath = "github.com/hanwen/go-fuse"; + fetch = { + type = "git"; + url = "https://github.com/hanwen/go-fuse"; + rev = "291273cb8ce0f139636a6fd7414be3c7e2de6288"; + sha256 = "1djfl6mni8k4wllhwcr6qwyg1nh6wykdalvdl6gpc1rwrjj9c6xi"; + }; + } + { + goPackagePath = "github.com/jacobsa/crypto"; + fetch = { + type = "git"; + url = "https://github.com/jacobsa/crypto"; + rev = "c73681c634de898c869684602cf0c0d2ce938c4d"; + sha256 = "02jbiy6szshbzcmp4j3gpc577hrhikxqvm4kzxixp27k9f2cx5si"; + }; + } + { + goPackagePath = "github.com/pkg/xattr"; + fetch = { + type = "git"; + url = "https://github.com/pkg/xattr"; + rev = "d15dbc2bb0b5da267362b5e066e2c44c1fcff6c7"; + sha256 = "1vab8mpk2x4vbhx0kd0i0kn6sf7z5ivilcmdklyizzcfcwghh17g"; + }; + } + { + goPackagePath = "github.com/rfjakob/eme"; + fetch = { + type = "git"; + url = "https://github.com/rfjakob/eme"; + rev = "2222dbd4ba467ab3fc7e8af41562fcfe69c0d770"; + sha256 = "0c227ly3z8pqaqg22lpd8nzgqrfsbjx5gi9rp9ks1cmd11dv2gl9"; + }; + } + { + goPackagePath = "golang.org/x/crypto"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/crypto"; + rev = "a49355c7e3f8fe157a85be2f77e6e269a0f89602"; + sha256 = "020q1laxjx5kcmnqy4wmdb63zhb0lyq6wpy40axhswzg2nd21s44"; + }; + } + { + goPackagePath = "golang.org/x/sync"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sync"; + rev = "1d60e4601c6fd243af51cc01ddf169918a5407ca"; + sha256 = "046jlanz2lkxq1r57x9bl6s4cvfqaic6p2xybsj8mq1120jv4rs6"; + }; + } + { + goPackagePath = "golang.org/x/sys"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sys"; + rev = "151529c776cdc58ddbe7963ba9af779f3577b419"; + sha256 = "149yfzs4k8vxhjr8f832drndir2k5ha0ggs2dw2fd6xvxf698bcx"; + }; + } +] diff --git a/pkgs/tools/graphics/appleseed/default.nix b/pkgs/tools/graphics/appleseed/default.nix index e4b31f06b6e4..56091a89e48b 100644 --- a/pkgs/tools/graphics/appleseed/default.nix +++ b/pkgs/tools/graphics/appleseed/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, cmake, boost165, pkgconfig, guile, -eigen3_3, libpng, python, mesa_glu, qt4, openexr, openimageio, +eigen3_3, libpng, python, libGLU, qt4, openexr, openimageio, opencolorio, xercesc, ilmbase, osl, seexpr }: @@ -17,7 +17,7 @@ in stdenv.mkDerivation rec { }; buildInputs = [ cmake pkgconfig boost_static guile eigen3_3 libpng python - mesa_glu qt4 openexr openimageio opencolorio xercesc + libGLU qt4 openexr openimageio opencolorio xercesc osl seexpr ]; diff --git a/pkgs/tools/graphics/luxcorerender/default.nix b/pkgs/tools/graphics/luxcorerender/default.nix index 387c8c0595e7..08d5ff851407 100644 --- a/pkgs/tools/graphics/luxcorerender/default.nix +++ b/pkgs/tools/graphics/luxcorerender/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, cmake, boost165, pkgconfig, python35 , tbb, openimageio, libjpeg, libpng, zlib, libtiff, ilmbase , freetype, openexr, libXdmcp, libxkbcommon, epoxy, at-spi2-core -, dbus, doxygen, qt5, c-blosc, mesa_glu, gnome3, pcre +, dbus, doxygen, qt5, c-blosc, libGLU, gnome3, pcre , bison, flex, libpthreadstubs, libX11 , embree2, makeWrapper, gsettings_desktop_schemas, glib , withOpenCL ? true , opencl-headers, ocl-icd, opencl-clhpp @@ -26,7 +26,7 @@ in stdenv.mkDerivation rec { buildInputs = [ embree2 pkgconfig cmake zlib boost_static libjpeg libtiff libpng ilmbase freetype openexr openimageio - tbb qt5.full c-blosc mesa_glu pcre bison + tbb qt5.full c-blosc libGLU pcre bison flex libX11 libpthreadstubs python35 libXdmcp libxkbcommon epoxy at-spi2-core dbus doxygen # needed for GSETTINGS_SCHEMAS_PATH diff --git a/pkgs/tools/graphics/pngquant/default.nix b/pkgs/tools/graphics/pngquant/default.nix index b53a07bcfadf..4e7d1e361f91 100644 --- a/pkgs/tools/graphics/pngquant/default.nix +++ b/pkgs/tools/graphics/pngquant/default.nix @@ -1,13 +1,14 @@ -{ stdenv, fetchgit, pkgconfig, libpng, zlib, lcms2 }: +{ stdenv, fetchFromGitHub, pkgconfig, libpng, zlib, lcms2 }: stdenv.mkDerivation rec { name = "pngquant-${version}"; - version = "2.11.7"; + version = "2.12.1"; - src = fetchgit { - url = "https://www.github.com/pornel/pngquant.git"; - rev = "refs/tags/${version}"; - sha256 = "1qr5qr2wznzp0v9xwyz4r3982rcm9kys913w8gwmv7qd1akvx2qh"; + src = fetchFromGitHub { + owner = "pornel"; + repo = "pngquant"; + rev = version; + sha256 = "0jdvry3kvmmxcgwf5a3zbfz0idl6yl3700ag7pf8sk4lg4qp0llp"; fetchSubmodules = true; }; diff --git a/pkgs/tools/graphics/structure-synth/default.nix b/pkgs/tools/graphics/structure-synth/default.nix index 92a7d69aa915..c1e6c2afecce 100644 --- a/pkgs/tools/graphics/structure-synth/default.nix +++ b/pkgs/tools/graphics/structure-synth/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, qt4, qmake4Hook, unzip, mesa_glu, makeWrapper }: +{ stdenv, fetchurl, qt4, qmake4Hook, unzip, libGLU, makeWrapper }: stdenv.mkDerivation rec { @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { sha256 = "1kiammx46719az6jzrav8yrwz82nk4m72ybj0kpbnvp9wfl3swbb"; }; - buildInputs = [ qt4 unzip mesa_glu makeWrapper ]; + buildInputs = [ qt4 unzip libGLU makeWrapper ]; nativeBuildInputs = [ qmake4Hook ]; # Thanks to https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=672000#15: diff --git a/pkgs/tools/graphics/vulkan-tools/default.nix b/pkgs/tools/graphics/vulkan-tools/default.nix index 4e4f5a5db4a6..778a12341540 100644 --- a/pkgs/tools/graphics/vulkan-tools/default.nix +++ b/pkgs/tools/graphics/vulkan-tools/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "LunarG Vulkan loader"; - homepage = "http://www.lunarg.com"; + homepage = https://www.lunarg.com; platforms = platforms.linux; license = licenses.asl20; maintainers = [ maintainers.ralith ]; diff --git a/pkgs/tools/misc/arp-scan/default.nix b/pkgs/tools/misc/arp-scan/default.nix index 760757190c32..e1068c248b34 100644 --- a/pkgs/tools/misc/arp-scan/default.nix +++ b/pkgs/tools/misc/arp-scan/default.nix @@ -1,14 +1,31 @@ -{ stdenv, fetchurl, libpcap }: +{ stdenv, fetchFromGitHub, autoreconfHook, libpcap, makeWrapper, perlPackages }: stdenv.mkDerivation rec { - name = "arp-scan-1.9"; + name = "arp-scan-${version}"; + version = "1.9.5"; - src = fetchurl { - url = "http://www.nta-monitor.com/files/arp-scan/${name}.tar.gz"; - sha256 = "14nqjzbmnlx2nac7lwa93y5m5iqk3layakyxyvfmvs283k3qm46f"; + src = fetchFromGitHub { + owner = "royhills"; + repo = "arp-scan"; + rev = "4de863c2627a05177eda7159692a588f9f520cd1"; + sha256 = "15zpfdybk2kh98shqs8qqd0f9nyi2ch2wcyv729rfj7yp0hif5mb"; }; - buildInputs = [ libpcap ]; + perlModules = with perlPackages; [ + HTTPDate + HTTPMessage + LWPUserAgent + URI + ]; + + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ libpcap makeWrapper ]; + + postInstall = '' + for name in get-{oui,iab}; do + wrapProgram "$out/bin/$name" --set PERL5LIB "${stdenv.lib.makePerlPath perlModules }" + done; + ''; meta = with stdenv.lib; { description = "ARP scanning and fingerprinting tool"; @@ -19,6 +36,6 @@ stdenv.mkDerivation rec { homepage = http://www.nta-monitor.com/wiki/index.php/Arp-scan_Documentation; license = licenses.gpl3; platforms = platforms.linux; - maintainers = [ maintainers.bjornfor ]; + maintainers = with maintainers; [ bjornfor mikoim ]; }; } diff --git a/pkgs/tools/misc/asciinema/default.nix b/pkgs/tools/misc/asciinema/default.nix index 0808704ecb78..c1cca25c576e 100644 --- a/pkgs/tools/misc/asciinema/default.nix +++ b/pkgs/tools/misc/asciinema/default.nix @@ -1,10 +1,10 @@ -{ lib, python3Packages, fetchFromGitHub }: +{ lib, python3Packages, fetchFromGitHub, glibcLocales }: let pythonPackages = python3Packages; in pythonPackages.buildPythonApplication rec { name = "asciinema-${version}"; - version = "2.0.0"; + version = "2.0.1"; buildInputs = with pythonPackages; [ nose ]; propagatedBuildInputs = with pythonPackages; [ requests ]; @@ -13,7 +13,7 @@ in pythonPackages.buildPythonApplication rec { owner = "asciinema"; repo = "asciinema"; rev = "v${version}"; - sha256 = "1f92hv9w58jf1f7igspjxvrxqn3n21kgya2zb56spqyydr4jzwdk"; + sha256 = "09m9agkslrbm36y8pjqhg5nmyz9hppjyhafhzpglnadhfgwqzznr"; }; patchPhase = '' @@ -21,8 +21,10 @@ in pythonPackages.buildPythonApplication rec { rm tests/pty_recorder_test.py ''; + checkInputs = [ glibcLocales ]; + checkPhase = '' - nosetests + LC_ALL=en_US.UTF-8 nosetests ''; meta = { diff --git a/pkgs/tools/misc/bibutils/default.nix b/pkgs/tools/misc/bibutils/default.nix index d86908559742..41a50eecd84b 100644 --- a/pkgs/tools/misc/bibutils/default.nix +++ b/pkgs/tools/misc/bibutils/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "bibutils-${version}"; - version = "6.5"; + version = "6.6"; src = fetchurl { url = "mirror://sourceforge/bibutils/bibutils_${version}_src.tgz"; - sha256 = "0bc5b9nyxbcc1y4vrhghj9y9221i34qq384zslfyb0ihkb6kq521"; + sha256 = "1zqwhjsngnflzdp2nd3762bvmkjq5mal417fly1n2xfgdqpg37ps"; }; configureFlags = [ "--dynamic" "--install-dir" "$(out)/bin" "--install-lib" "$(out)/lib" ]; diff --git a/pkgs/tools/misc/debootstrap/default.nix b/pkgs/tools/misc/debootstrap/default.nix index 715996e8f61a..e68aaff1ddfb 100644 --- a/pkgs/tools/misc/debootstrap/default.nix +++ b/pkgs/tools/misc/debootstrap/default.nix @@ -4,13 +4,13 @@ # There is also cdebootstrap now. Is that easier to maintain? stdenv.mkDerivation rec { name = "debootstrap-${version}"; - version = "1.0.103"; + version = "1.0.105"; src = fetchurl { # git clone git://git.debian.org/d-i/debootstrap.git # I'd like to use the source. However it's lacking the lanny script ? (still true?) url = "mirror://debian/pool/main/d/debootstrap/debootstrap_${version}.tar.gz"; - sha256 = "07qqbm50ji1j04hgv1fmy7y1jwl4rjh8q57znh9g3rr4j6fmax7q"; + sha256 = "0m4630q8smn45pmck1azk5sv6cgdzza2r001paqvmasqa6qxbjq3"; }; buildInputs = [ dpkg gettext gawk perl ]; diff --git a/pkgs/tools/misc/papis/default.nix b/pkgs/tools/misc/papis/default.nix index 20fafff587c5..260d96a981f3 100644 --- a/pkgs/tools/misc/papis/default.nix +++ b/pkgs/tools/misc/papis/default.nix @@ -3,31 +3,18 @@ }: let - python = python3.override { - packageOverrides = self: super: { - - # https://github.com/eventable/vobject/issues/112 - python-dateutil = super.python-dateutil.overridePythonAttrs (oldAttrs: rec { - version = "2.6.1"; - src = oldAttrs.src.override { - inherit version; - sha256 = "891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca"; - }; - }); - - }; - }; + python = python3; in python.pkgs.buildPythonApplication rec { pname = "papis"; - version = "0.5.3"; + version = "0.6"; # Missing tests on Pypi src = fetchFromGitHub { owner = "papis"; repo = pname; rev = "v${version}"; - sha256 = "1yc4ilb7bw099pi2vwawyf8mi0n1kp87wgwgwcwc841ibq62q8ic"; + sha256 = "0zy8q154zhpqb75c775nwq3mdl1szhzhkfi0nvyjmzfgsv2g1wa2"; }; postPatch = '' @@ -39,7 +26,7 @@ in python.pkgs.buildPythonApplication rec { argcomplete arxiv2bib beautifulsoup4 bibtexparser configparser dmenu-python habanero papis-python-rofi pylibgen prompt_toolkit pyparser python_magic pyyaml - requests unidecode urwid vobject tkinter + requests unidecode urwid vobject tkinter whoosh vim ]; diff --git a/pkgs/tools/misc/patdiff/default.nix b/pkgs/tools/misc/patdiff/default.nix index 98907ad4b829..ef848bb43f26 100644 --- a/pkgs/tools/misc/patdiff/default.nix +++ b/pkgs/tools/misc/patdiff/default.nix @@ -4,7 +4,7 @@ with ocamlPackages; janePackage { name = "patdiff"; - hash = "04kl9h7j3pzpyic8p34b8i9vpf6qn7ixp077d8i44cpbymdqdn96"; + hash = "02cdn5j5brbp4n2rpxprzxfakjbl7n2llixg7m632bih3ppmfcq1"; buildInputs = [ core_extended expect_test_helpers patience_diff ocaml_pcre ]; meta = { description = "File Diff using the Patience Diff algorithm"; diff --git a/pkgs/tools/misc/pdd/default.nix b/pkgs/tools/misc/pdd/default.nix index c075312618b8..d84f0f966e49 100644 --- a/pkgs/tools/misc/pdd/default.nix +++ b/pkgs/tools/misc/pdd/default.nix @@ -2,13 +2,13 @@ buildPythonApplication rec { pname = "pdd"; - version = "1.2"; + version = "1.3"; src = fetchFromGitHub { owner = "jarun"; repo = "pdd"; rev = "v${version}"; - sha256 = "09nyzzch4jlsjfx8axqyxh9d1sw8x4g3vg5fbxz7m16994fzz75i"; + sha256 = "1r7861qg73jpchgmk8zcz0iki95ic1i3f77sd7j7vf5bvkikv739"; }; format = "other"; diff --git a/pkgs/tools/misc/plantuml/default.nix b/pkgs/tools/misc/plantuml/default.nix index 2eb6f1aa8e6d..7db908773169 100644 --- a/pkgs/tools/misc/plantuml/default.nix +++ b/pkgs/tools/misc/plantuml/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, jre, graphviz }: stdenv.mkDerivation rec { - version = "1.2017.18"; + version = "1.2018.8"; name = "plantuml-${version}"; src = fetchurl { url = "mirror://sourceforge/project/plantuml/${version}/plantuml.${version}.jar"; - sha256 = "0ssfg6lpk41ydhxhi6y6c9ca3hpql6gg3bxjws8vrx9s3s6r5rb0"; + sha256 = "02svd0cpaix2d523iy457h3qwlc9qpvvkls64bqa7yrqyk43xrii"; }; # It's only a .jar file and a shell wrapper diff --git a/pkgs/tools/misc/riemann-c-client/default.nix b/pkgs/tools/misc/riemann-c-client/default.nix index 42a94207be79..68d9df987d8c 100644 --- a/pkgs/tools/misc/riemann-c-client/default.nix +++ b/pkgs/tools/misc/riemann-c-client/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, file , protobufc }: stdenv.mkDerivation rec { - name = "riemann-c-client-1.10.1"; + name = "riemann-c-client-1.10.2"; src = fetchFromGitHub { owner = "algernon"; repo = "riemann-c-client"; rev = "${name}"; - sha256 = "1pzyngvj9aq1w2185qpg6rxrjn406pnpy40bnh4c21fn4ql5kk9p"; + sha256 = "185wn6fqgrs16f9c0lkzw14477wmkgandz86h4miw7cgi7ki4l5i"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/tools/misc/sixpair/default.nix b/pkgs/tools/misc/sixpair/default.nix new file mode 100644 index 000000000000..055fa9418a9a --- /dev/null +++ b/pkgs/tools/misc/sixpair/default.nix @@ -0,0 +1,38 @@ +{ stdenv, fetchurl, libusb }: +stdenv.mkDerivation { + name = "sixpair-2007-04-18"; + + src = fetchurl { + url = http://www.pabr.org/sixlinux/sixpair.c; + sha256 = "1b0a3k7gs544cbji7n29jxlrsscwfx6s1r2sgwdl6hmkc1l9gagr"; + }; + + # hcitool is depricated + patches = [ ./hcitool.patch ]; + + buildInputs = [ libusb ]; + + unpackPhase = '' + cp $src sixpair.c + ''; + + buildPhase = '' + cc -o sixpair sixpair.c -lusb + ''; + + installPhase = '' + mkdir -p $out/bin + cp sixpair $out/bin/sixpair + ''; + + meta = { + description = "Pair with SIXAXIS controllers over USB"; + longDescription = '' + This command-line utility searches USB buses for SIXAXIS controllers and tells them to connect to a new Bluetooth master. + ''; + homepage = http://www.pabr.org/sixlinux/; + license = stdenv.lib.licenses.gpl2; + maintainers = [ stdenv.lib.maintainers.tomsmeets ]; + platforms = stdenv.lib.platforms.linux; + }; +} diff --git a/pkgs/tools/misc/sixpair/hcitool.patch b/pkgs/tools/misc/sixpair/hcitool.patch new file mode 100644 index 000000000000..b66e791dd0e0 --- /dev/null +++ b/pkgs/tools/misc/sixpair/hcitool.patch @@ -0,0 +1,19 @@ +diff --git a/sixpair.c b/sixpair.c +index b009a6f..78b7ef0 100644 +--- a/sixpair.c ++++ b/sixpair.c +@@ -76,11 +76,11 @@ void process_device(int argc, char **argv, struct usb_device *dev, + exit(1); + } + } else { +- FILE *f = popen("hcitool dev", "r"); ++ FILE *f = popen("bluetoothctl list", "r"); + if ( !f || +- fscanf(f, "%*s\n%*s %x:%x:%x:%x:%x:%x", ++ fscanf(f, "%*s %x:%x:%x:%x:%x:%x", + &mac[0],&mac[1],&mac[2],&mac[3],&mac[4],&mac[5]) != 6 ) { +- printf("Unable to retrieve local bd_addr from `hcitool dev`.\n"); ++ printf("Unable to retrieve local bd_addr from `bluetoothctl list`.\n"); + printf("Please enable Bluetooth or specify an address manually.\n"); + exit(1); + } diff --git a/pkgs/tools/misc/system-config-printer/default.nix b/pkgs/tools/misc/system-config-printer/default.nix index 90a17bdff704..9d12fa254d47 100644 --- a/pkgs/tools/misc/system-config-printer/default.nix +++ b/pkgs/tools/misc/system-config-printer/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, udev, intltool, pkgconfig, glib, xmlto, wrapGAppsHook , makeWrapper, gtk3, docbook_xml_dtd_412, docbook_xsl , libxml2, desktop-file-utils, libusb1, cups, gdk_pixbuf, pango, atk, libnotify -, gobjectIntrospection, libgnome-keyring3 +, gobjectIntrospection, libsecret , cups-filters , pythonPackages , withGUI ? true @@ -9,32 +9,36 @@ stdenv.mkDerivation rec { name = "system-config-printer-${version}"; - version = "1.5.9"; + version = "1.5.11"; src = fetchurl { - url = "https://github.com/zdohnal/system-config-printer/releases/download/v${version}/${name}.tar.gz"; - sha256 = "03bwlpsiqpxzcwd78a7rmwiww4jnqd7kl7il4kx78l1r57lasd2r"; + url = "https://github.com/zdohnal/system-config-printer/releases/download/${version}/${name}.tar.xz"; + sha256 = "1lq0q51bhanirpjjvvh4xiafi8hgpk8r32h0dj6dn3f32z8pib9q"; }; patches = [ ./detect_serverbindir.patch ]; - buildInputs = - [ intltool pkgconfig glib udev libusb1 cups xmlto - libxml2 docbook_xml_dtd_412 docbook_xsl desktop-file-utils - pythonPackages.python pythonPackages.wrapPython - libnotify gobjectIntrospection gdk_pixbuf pango atk - libgnome-keyring3 - ]; + buildInputs = [ + glib udev libusb1 cups + pythonPackages.python + libnotify gobjectIntrospection gdk_pixbuf pango atk + libsecret + ]; - nativeBuildInputs = [ wrapGAppsHook ]; + nativeBuildInputs = [ + intltool pkgconfig + xmlto libxml2 docbook_xml_dtd_412 docbook_xsl desktop-file-utils + pythonPackages.wrapPython + wrapGAppsHook + ]; pythonPath = with pythonPackages; requiredPythonModules [ pycups pycurl dbus-python pygobject3 requests pycairo pysmbc ]; - configureFlags = - [ "--with-udev-rules" - "--with-udevdir=$(out)/etc/udev" - "--with-systemdsystemunitdir=$(out)/etc/systemd/system" - ]; + configureFlags = [ + "--with-udev-rules" + "--with-udevdir=$(out)/etc/udev" + "--with-systemdsystemunitdir=$(out)/etc/systemd/system" + ]; stripDebugList = [ "bin" "lib" "etc/udev" ]; diff --git a/pkgs/tools/misc/termtosvg/default.nix b/pkgs/tools/misc/termtosvg/default.nix new file mode 100644 index 000000000000..65b1f71194ac --- /dev/null +++ b/pkgs/tools/misc/termtosvg/default.nix @@ -0,0 +1,27 @@ +{ lib, python3, fetchFromGitHub }: + +python3.pkgs.buildPythonApplication rec { + pname = "termtosvg"; + version = "0.3.0"; + + # tests are not available when fetching from pypi + src = fetchFromGitHub { + owner = "nbedos"; + repo = pname; + rev = version; + sha256 = "09hw0467pyfj5gwn3768b3rvs5ch3wb1kaax7zsqjd7mw2qh0cjw"; + }; + + propagatedBuildInputs = with python3.pkgs; [ svgwrite pyte ]; + + checkInputs = [ python3.pkgs.mock ]; + preCheck = "export HOME=$(mktemp -d)"; + postCheck = "unset HOME"; + + meta = with lib; { + homepage = https://github.com/nbedos/termtosvg; + description = "Record terminal sessions as SVG animations"; + license = licenses.bsd3; + maintainers = with maintainers; [ ma27 ]; + }; +} diff --git a/pkgs/tools/misc/you-get/default.nix b/pkgs/tools/misc/you-get/default.nix index bfce454473ad..e9cd23f5bbc4 100644 --- a/pkgs/tools/misc/you-get/default.nix +++ b/pkgs/tools/misc/you-get/default.nix @@ -2,7 +2,7 @@ buildPythonApplication rec { pname = "you-get"; - version = "0.4.1077"; + version = "0.4.1099"; # Tests aren't packaged, but they all hit the real network so # probably aren't suitable for a build environment anyway. @@ -10,7 +10,7 @@ buildPythonApplication rec { src = fetchPypi { inherit pname version; - sha256 = "1qf4n1zgbr533a0qbxp8548f25jwqdwfl42gi5dyfhm4f1y1jk1a"; + sha256 = "1z9zhxv2vgbb20hgjiksyqm2zglwq71azbp27na1779hbqc467ik"; }; meta = with stdenv.lib; { diff --git a/pkgs/tools/networking/chrony/default.nix b/pkgs/tools/networking/chrony/default.nix index 27f5ca2c7dd1..2db26985dcf9 100644 --- a/pkgs/tools/networking/chrony/default.nix +++ b/pkgs/tools/networking/chrony/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, libcap, readline, texinfo, nss, nspr -, libseccomp }: +, libseccomp, pps-tools }: assert stdenv.isLinux -> libcap != null; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { }; buildInputs = [ readline texinfo nss nspr ] - ++ stdenv.lib.optionals stdenv.isLinux [ libcap libseccomp ]; + ++ stdenv.lib.optionals stdenv.isLinux [ libcap libseccomp pps-tools ]; nativeBuildInputs = [ pkgconfig ]; hardeningEnable = [ "pie" ]; diff --git a/pkgs/tools/networking/iperf/3.nix b/pkgs/tools/networking/iperf/3.nix index ed6ca57f3da8..86ee7578bb67 100644 --- a/pkgs/tools/networking/iperf/3.nix +++ b/pkgs/tools/networking/iperf/3.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, openssl, fetchpatch }: stdenv.mkDerivation rec { - name = "iperf-3.5"; + name = "iperf-3.6"; src = fetchurl { url = "https://downloads.es.net/pub/iperf/${name}.tar.gz"; - sha256 = "1m9cyycv70s8nlbgr1lqwr155ixk17np0nzqgwaw3f51vkndk6sk"; + sha256 = "0vllfmyqiy6nxgbagsx1zrs4pmfawyalzm5l1xcwqq64dpj52pfy"; }; buildInputs = [ openssl ]; diff --git a/pkgs/tools/networking/ntp/default.nix b/pkgs/tools/networking/ntp/default.nix index 6e566d3c4739..467b17e468a2 100644 --- a/pkgs/tools/networking/ntp/default.nix +++ b/pkgs/tools/networking/ntp/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, openssl, perl, libcap ? null, libseccomp ? null }: +{ stdenv, lib, fetchurl, openssl, perl, libcap ? null, libseccomp ? null, pps-tools }: assert stdenv.isLinux -> libcap != null; assert stdenv.isLinux -> libseccomp != null; @@ -28,7 +28,9 @@ stdenv.mkDerivation rec { ] ++ stdenv.lib.optional stdenv.isLinux "--enable-linuxcaps" ++ stdenv.lib.optional withSeccomp "--enable-libseccomp"; - buildInputs = [ libcap openssl perl ] ++ lib.optional withSeccomp libseccomp; + buildInputs = [ libcap openssl perl ] + ++ lib.optional withSeccomp libseccomp + ++ lib.optional stdenv.isLinux pps-tools; hardeningEnable = [ "pie" ]; diff --git a/pkgs/tools/networking/nyx/default.nix b/pkgs/tools/networking/nyx/default.nix new file mode 100644 index 000000000000..3476e56993bf --- /dev/null +++ b/pkgs/tools/networking/nyx/default.nix @@ -0,0 +1,25 @@ +{ lib, pythonPackages }: + +with pythonPackages; + +buildPythonApplication rec { + pname = "nyx"; + version = "2.0.4"; + + src = fetchPypi { + inherit pname version; + sha256 = "0pm7vfcqr02pzqz4b2f6sw5prxxmgqwr1912am42xmy2i53n7nrq"; + }; + + propagatedBuildInputs = [ stem ]; + + # ./run_tests.py returns `TypeError: testFailure() takes exactly 1 argument` + doCheck = false; + + meta = with lib; { + description = "Command-line monitor for Tor"; + homepage = https://nyx.torproject.org/; + license = licenses.gpl3; + maintainers = with maintainers; [ offline ]; + }; +} diff --git a/pkgs/tools/networking/telepresence/default.nix b/pkgs/tools/networking/telepresence/default.nix index bbdaed4ccc04..54d54a76fcb3 100644 --- a/pkgs/tools/networking/telepresence/default.nix +++ b/pkgs/tools/networking/telepresence/default.nix @@ -1,12 +1,13 @@ { lib, stdenv, fetchgit, fetchFromGitHub, makeWrapper, git -, python3, sshfs-fuse, torsocks, sshuttle, conntrack-tools }: +, python3, sshfs-fuse, torsocks, sshuttle, conntrack-tools +, openssh, which, coreutils, iptables, bash }: let sshuttle-telepresence = lib.overrideDerivation sshuttle (p: { src = fetchgit { url = "https://github.com/datawire/sshuttle.git"; - rev = "8f881d131a0d5cb203c5a530d233996077f1da1e"; - sha256 = "0c760xhblz5mpcn5ddqpvivvgn0ixqbhpjsy50dkhgn6lymrx9bx"; + rev = "32226ff14d98d58ccad2a699e10cdfa5d86d6269"; + sha256 = "1q20lnljndwcpgqv2qrf1k0lbvxppxf98a4g5r9zd566znhcdhx3"; leaveDotGit = true; }; @@ -16,26 +17,43 @@ let }); in stdenv.mkDerivation rec { pname = "telepresence"; - version = "0.67"; + version = "0.85"; name = "${pname}-${version}"; src = fetchFromGitHub { owner = "datawire"; repo = "telepresence"; rev = version; - sha256 = "1bpyzgvrf43yvhwp5bzkp2qf3z9dhjma165w8ssca9g00v4b5vg9"; + sha256 = "1iypqrx9pnhaz3p5bvl6g0c0c3d1799dv0xdjrzc1z5wa8diawvj"; }; - buildInputs = [ makeWrapper ]; + buildInputs = [ makeWrapper python3 ]; phases = ["unpackPhase" "installPhase"]; installPhase = '' mkdir -p $out/libexec $out/bin - cp cli/telepresence $out/libexec/telepresence - makeWrapper $out/libexec/telepresence $out/bin/telepresence \ - --prefix PATH : ${lib.makeBinPath [python3 sshfs-fuse torsocks conntrack-tools sshuttle-telepresence]} + export PREFIX=$out + substituteInPlace ./install.sh \ + --replace "#!/bin/bash" "#!${stdenv.shell}" \ + --replace '"''${VENVDIR}/bin/pip" -q install "git+https://github.com/datawire/sshuttle.git@telepresence"' "" \ + --replace '"''${VENVDIR}/bin/sshuttle-telepresence"' '"${sshuttle-telepresence}/bin/sshuttle-telepresence"' + ./install.sh + + wrapProgram $out/bin/telepresence \ + --prefix PATH : ${lib.makeBinPath [ + python3 + sshfs-fuse + torsocks + conntrack-tools + sshuttle-telepresence + openssh + which + coreutils + iptables + bash + ]} ''; meta = { diff --git a/pkgs/tools/networking/unbound/python.nix b/pkgs/tools/networking/unbound/python.nix index 911afdd18bb0..67e6f2e9c43f 100644 --- a/pkgs/tools/networking/unbound/python.nix +++ b/pkgs/tools/networking/unbound/python.nix @@ -5,11 +5,11 @@ let in stdenv.mkDerivation rec { pname = "pyunbound"; name = "${pname}-${version}"; - version = "1.6.0"; + version = "1.7.3"; src = fetchurl { url = "http://unbound.net/downloads/unbound-${version}.tar.gz"; - sha256 = "1dzsxyp34ianp08wk4vf13qzl5ss5rr9v1p8zr1aggfywrsbhzbb"; + sha256 = "0bb0p8nbda77ghx20yfl7hqxm9x709223q35465v99i8v4ay27f1"; }; buildInputs = [ openssl expat libevent swig python ]; diff --git a/pkgs/tools/networking/xl2tpd/default.nix b/pkgs/tools/networking/xl2tpd/default.nix index f34b01fb484a..d86b1613a9a3 100644 --- a/pkgs/tools/networking/xl2tpd/default.nix +++ b/pkgs/tools/networking/xl2tpd/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "xl2tpd-${version}"; - version = "1.3.10.1"; + version = "1.3.12"; src = fetchFromGitHub { owner = "xelerance"; repo = "xl2tpd"; rev = "v${version}"; - sha256 = "0rz31bcjl7na89abn9bj5p3dbgqd6q6xsympzki15axxhyy57qan"; + sha256 = "0slza1v8qligy8c83j0x3jzb85m9ibjxyyvpwsykrkypav8a6ii1"; }; buildInputs = [ libpcap ]; diff --git a/pkgs/tools/package-management/createrepo_c/default.nix b/pkgs/tools/package-management/createrepo_c/default.nix index c2fd1293b791..f6314b655294 100644 --- a/pkgs/tools/package-management/createrepo_c/default.nix +++ b/pkgs/tools/package-management/createrepo_c/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchFromGitHub, cmake, pkgconfig, bzip2, expat, glib, curl, libxml2, python2, rpm, openssl, sqlite, file, xz, pcre, bash-completion }: stdenv.mkDerivation rec { - rev = "0.10.0"; + rev = "0.11.0"; name = "createrepo_c-${rev}"; src = fetchFromGitHub { inherit rev; owner = "rpm-software-management"; repo = "createrepo_c"; - sha256 = "1sqzdkj9vigkvxsjlih1i0gylv53na2yic5if9w1s2sgxhqqz5zv"; + sha256 = "1w9yynj8mxhw714gvgr0fibfks584b4y0n4vjckcf7y97cpdhjkn"; }; patches = [ diff --git a/pkgs/tools/package-management/nix-du/default.nix b/pkgs/tools/package-management/nix-du/default.nix index 212b61f62f06..24672296506d 100644 --- a/pkgs/tools/package-management/nix-du/default.nix +++ b/pkgs/tools/package-management/nix-du/default.nix @@ -1,19 +1,20 @@ { stdenv, fetchFromGitHub, rustPlatform, nix, boost, graphviz }: rustPlatform.buildRustPackage rec { name = "nix-du-${version}"; - version = "0.1.2"; + version = "0.2.0"; src = fetchFromGitHub { owner = "symphorien"; repo = "nix-du"; rev = "v${version}"; - sha256 = "1y7ifr4c3v1494swh6akvna0d0rxjy9jw3mw2wdd6vj1xphvmimq"; + sha256 = "1n1qgqjbwbb59xnzgz0dn8h8pckh6yq3crh0w6x2sngijwh678x8"; }; - cargoSha256 = "0qq7a6ncxnbjvnmly99awqrk9f3z9b55ifil7b0bn5yhk4h9sa6y"; + cargoSha256 = "1qidbrkdpf4kliyvy2040qi3a67s8mr2r46rjcblr1v2gar0xgs0"; - doCheck = true; + # switch to true when nix includes https://github.com/NixOS/nix/pull/2223 and + # https://github.com/NixOS/nix/pull/2234 + doCheck = false; checkInputs = [ graphviz ]; - nativeBuildInputs = [] ++ stdenv.lib.optionals doCheck checkInputs; buildInputs = [ boost @@ -25,6 +26,6 @@ rustPlatform.buildRustPackage rec { homepage = https://github.com/symphorien/nix-du; license = licenses.lgpl3; maintainers = [ maintainers.symphorien ]; - platforms = platforms.all; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/security/gnu-pw-mgr/default.nix b/pkgs/tools/security/gnu-pw-mgr/default.nix new file mode 100644 index 000000000000..23aec604d2d1 --- /dev/null +++ b/pkgs/tools/security/gnu-pw-mgr/default.nix @@ -0,0 +1,20 @@ +{ stdenv, lib, fetchurl, gnulib }: + +stdenv.mkDerivation rec { + name = "gnu-pw-mgr-${version}"; + version = "2.3.2"; + src = fetchurl { + url = "http://ftp.gnu.org/gnu/gnu-pw-mgr/${name}.tar.xz"; + sha256 = "0x60g0syqpd107l8w4bl213imy2lspm4kz1j18yr1sh10rdxlgxd"; + }; + + buildInputs = [ gnulib ]; + + meta = with lib; { + homepage = https://www.gnu.org/software/gnu-pw-mgr/; + description = "A password manager designed to make it easy to reconstruct difficult passwords"; + license = with licenses; [ gpl3Plus lgpl3Plus ]; + platforms = stdenv.lib.platforms.linux; + maintainers = with maintainers; [ qoelet ]; + }; +} diff --git a/pkgs/tools/security/kbfs/default.nix b/pkgs/tools/security/kbfs/default.nix index 9e1f664f5d84..f019aa460aea 100644 --- a/pkgs/tools/security/kbfs/default.nix +++ b/pkgs/tools/security/kbfs/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "kbfs-${version}"; - version = "1.0.44"; + version = "2.1.1"; goPackagePath = "github.com/keybase/kbfs"; subPackages = [ "kbfsfuse" "kbfsgit/git-remote-keybase" ]; @@ -13,7 +13,7 @@ buildGoPackage rec { owner = "keybase"; repo = "kbfs"; rev = "v${version}"; - sha256 = "1vjgzif8ki9xrlcghpzkvqwfwvaq63llf52s03m3d2vkyigmgp78"; + sha256 = "1s1bgi9hcilz2is8w2kkvzi928i7w6m5j2x8avkb8zl9s3mrqz3q"; }; buildFlags = [ "-tags production" ]; diff --git a/pkgs/tools/security/keybase/default.nix b/pkgs/tools/security/keybase/default.nix index 47941a9d7787..1bccd4c9f957 100644 --- a/pkgs/tools/security/keybase/default.nix +++ b/pkgs/tools/security/keybase/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "keybase-${version}"; - version = "2.0.0"; + version = "2.1.0"; goPackagePath = "github.com/keybase/client"; subPackages = [ "go/keybase" ]; @@ -13,7 +13,7 @@ buildGoPackage rec { owner = "keybase"; repo = "client"; rev = "v${version}"; - sha256 = "0lapcw9csr18n4pc1mlljs1bd8w8imzsic4qgr07s53i80bd8l6n"; + sha256 = "16izsx5944byc930i6pqsbyrp316yyy8z5xvmzj0g8rgawajdx5h"; }; buildFlags = [ "-tags production" ]; diff --git a/pkgs/tools/security/keybase/gui.nix b/pkgs/tools/security/keybase/gui.nix index 1d50f5498c83..b53860e406d2 100644 --- a/pkgs/tools/security/keybase/gui.nix +++ b/pkgs/tools/security/keybase/gui.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, buildFHSUserEnv, writeTextFile, alsaLib, atk, cairo, cups -, dbus, expat, fontconfig, freetype, gcc, gdk_pixbuf, glib, gnome2, gtk2 +, dbus, expat, fontconfig, freetype, gcc, gdk_pixbuf, glib, gnome2, gtk3 , libnotify, nspr, nss, pango, systemd, xorg, utillinuxMinimal }: let @@ -16,7 +16,7 @@ let gdk_pixbuf glib gnome2.GConf - gtk2 + gtk3 libnotify nspr nss @@ -38,10 +38,10 @@ let in stdenv.mkDerivation rec { name = "keybase-gui-${version}"; - version = "1.0.44-20180223200436.9a9ccec79"; + version = "2.3.0-20180627160031.8e0438e6fb"; src = fetchurl { url = "https://s3.amazonaws.com/prerelease.keybase.io/linux_binaries/deb/keybase_${version}_amd64.deb"; - sha256 = "0dmi0fw39924kpahlsk853hbmpy8a6nj78lrh1wharayjpvj6jv3"; + sha256 = "0xaxxjdfdmgv0wfy75dspfa0a7cdwdpphyy6my9vw82v8jxl3ffx"; }; phases = ["unpackPhase" "installPhase" "fixupPhase"]; unpackPhase = '' diff --git a/pkgs/tools/security/pass/extensions/otp.nix b/pkgs/tools/security/pass/extensions/otp.nix index 60198675b29d..6d35c4aa8375 100644 --- a/pkgs/tools/security/pass/extensions/otp.nix +++ b/pkgs/tools/security/pass/extensions/otp.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "pass-otp-${version}"; - version = "1.1.0"; + version = "1.1.1"; src = fetchFromGitHub { owner = "tadfisher"; repo = "pass-otp"; rev = "v${version}"; - sha256 = "1cgj4zc8fq88n3h6c0vkv9i5al785mdprpgpbv5m22dz9p1wqvbb"; + sha256 = "0m8x5dqwcr9jim530685nsq4zn941hhl7ridmmd63b204z141rwa"; }; buildInputs = [ oathToolkit ]; diff --git a/pkgs/tools/security/pdfcrack/default.nix b/pkgs/tools/security/pdfcrack/default.nix new file mode 100644 index 000000000000..3606e7b23f4b --- /dev/null +++ b/pkgs/tools/security/pdfcrack/default.nix @@ -0,0 +1,23 @@ +{ stdenv, lib, fetchurl }: + +stdenv.mkDerivation rec { + name = "pdfcrack-${version}"; + version = "0.16"; + + src = fetchurl { + url = "mirror://sourceforge/pdfcrack/pdfcrack/pdfcrack-${version}.tar.gz"; + sha256 = "1vvkrg3niinz0j9wwm31laxgmd7wdz201kn82b3dbksc0w1v4rbq"; + }; + + installPhase = '' + install -Dt $out/bin pdfcrack + ''; + + meta = with lib; { + homepage = http://pdfcrack.sourceforge.net/; + description = "Small command line driven tool for recovering passwords and content from PDF files"; + license = with licenses; [ gpl2 ]; + platforms = platforms.linux; + maintainers = with maintainers; [ qoelet ]; + }; +} diff --git a/pkgs/tools/system/acpica-tools/default.nix b/pkgs/tools/system/acpica-tools/default.nix index c9a33bc64e0c..7e480a0a17d0 100644 --- a/pkgs/tools/system/acpica-tools/default.nix +++ b/pkgs/tools/system/acpica-tools/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "acpica-tools-${version}"; - version = "20180531"; + version = "20180629"; src = fetchurl { url = "https://acpica.org/sites/acpica/files/acpica-unix-${version}.tar.gz"; - sha256 = "0rbn0anxs6r1ks1lgaxqhiv2kqgh4f1fq5qi2kdv7hir82mdqv4g"; + sha256 = "0kwssazw7pqgxvxj41q5r0g83bqqk64f2lrpnfjn9p6v58zizlbh"; }; NIX_CFLAGS_COMPILE = "-O3"; diff --git a/pkgs/tools/system/hwinfo/default.nix b/pkgs/tools/system/hwinfo/default.nix index 73adb0828028..066848ea7be9 100644 --- a/pkgs/tools/system/hwinfo/default.nix +++ b/pkgs/tools/system/hwinfo/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "hwinfo-${version}"; - version = "21.55"; + version = "21.56"; src = fetchFromGitHub { owner = "opensuse"; repo = "hwinfo"; rev = "${version}"; - sha256 = "005xf5j2bbalsi6z2j9q9r4zf80a04f7mz0bd2jyb8rh3lnac6w8"; + sha256 = "09zc8k1d9l673bb41vjpz3zrzaxaymqgk8m1v7pccvg70rq005kv"; }; patchPhase = '' diff --git a/pkgs/tools/system/syslog-ng/default.nix b/pkgs/tools/system/syslog-ng/default.nix index 4f3795cf54c9..7abf9e85ab88 100644 --- a/pkgs/tools/system/syslog-ng/default.nix +++ b/pkgs/tools/system/syslog-ng/default.nix @@ -57,7 +57,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "man" ]; meta = with stdenv.lib; { - homepage = http://www.balabit.com/network-security/syslog-ng/; + homepage = https://www.balabit.com/network-security/syslog-ng/; description = "Next-generation syslogd with advanced networking and filtering capabilities"; license = licenses.gpl2; maintainers = with maintainers; [ rickynils fpletz ]; diff --git a/pkgs/tools/text/languagetool/default.nix b/pkgs/tools/text/languagetool/default.nix index e60ead5bc8f5..42ba36adf310 100644 --- a/pkgs/tools/text/languagetool/default.nix +++ b/pkgs/tools/text/languagetool/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "LanguageTool-${version}"; - version = "4.1"; + version = "4.2"; src = fetchzip { url = "https://www.languagetool.org/download/${name}.zip"; - sha256 = "0qc4z5rl9239lqfi2jrggzmjkx4f33n0arlqm5xgfaqgi8wypz0l"; + sha256 = "01iy3cq6rwkm8sflj2nwp4ib29hyykd23hfsnrmqxji9csj8pf71"; }; nativeBuildInputs = [ makeWrapper ]; buildInputs = [ jre ]; diff --git a/pkgs/tools/typesetting/hevea/default.nix b/pkgs/tools/typesetting/hevea/default.nix index e125c8e7f2fe..aa32d52dfc6d 100644 --- a/pkgs/tools/typesetting/hevea/default.nix +++ b/pkgs/tools/typesetting/hevea/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, ocamlPackages }: stdenv.mkDerivation rec { - name = "hevea-2.31"; + name = "hevea-2.32"; src = fetchurl { url = "http://pauillac.inria.fr/~maranget/hevea/distri/${name}.tar.gz"; - sha256 = "15xrnnqlacz8dpr09h7jgijm65wss99rmy9mb1zmapplmwhavmzv"; + sha256 = "1s4yqphfcr1pf5mcj5c84mvmd107k525iiym5jdwsxz0ka0ccmfy"; }; buildInputs = with ocamlPackages; [ ocaml ocamlbuild ]; diff --git a/pkgs/tools/typesetting/tex/texlive/bin.nix b/pkgs/tools/typesetting/tex/texlive/bin.nix index 6555c999d7f2..32894748ac46 100644 --- a/pkgs/tools/typesetting/tex/texlive/bin.nix +++ b/pkgs/tools/typesetting/tex/texlive/bin.nix @@ -4,7 +4,7 @@ , freetype, t1lib, gd, libXaw, icu, ghostscript, ed, libXt, libXpm, libXmu, libXext , xextproto, perl, libSM, ruby, expat, curl, libjpeg, python, fontconfig, pkgconfig , poppler, libpaper, graphite2, zziplib, harfbuzz, texinfo, potrace, gmp, mpfr -, xpdf, cairo, pixman, xorg, clisp +, xpdf, cairo, pixman, xorg, clisp, biber , makeWrapper }: @@ -261,6 +261,7 @@ dvipng = stdenv.mkDerivation { }; +inherit biber; bibtexu = bibtex8; bibtex8 = stdenv.mkDerivation { name = "texlive-bibtex-x.bin-${version}"; diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 6b1219690d7f..2e8285db1aab 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -5,7 +5,7 @@ * to merges. Please use the full-text search of your editor. ;) * Hint: ### starts category names. */ -{ lib, nixpkgsFun, noSysDirs, config}: +{ lib, noSysDirs, config}: self: pkgs: with pkgs; @@ -15,22 +15,6 @@ with pkgs; # Allow callPackage to fill in the pkgs argument inherit pkgs; - - # Override system. This is useful to build i686 packages on x86_64-linux. - forceSystem = system: kernel: nixpkgsFun { - localSystem = { - inherit system; - platform = platform // { kernelArch = kernel; }; - }; - }; - - # Used by wine, firefox with debugging version of Flash, ... - pkgsi686Linux = forceSystem "i686-linux" "i386"; - - callPackage_i686 = if stdenv.system == "i686-linux" || stdenv.system == "x86_64-linux" - then pkgsi686Linux.callPackage - else throw "callPackage_i686 not supported on system '${stdenv.system}'"; - # A stdenv capable of building 32-bit binaries. On x86_64-linux, # it uses GCC compiled with multilib support; on i686-linux, it's # just the plain stdenv. @@ -631,7 +615,7 @@ with pkgs; dgsh = callPackage ../shells/dgsh { }; - dkimpy = pythonPackages.dkimpy; + dkimpy = with pythonPackages; toPythonApplication dkimpy; ecdsautils = callPackage ../tools/security/ecdsautils { }; @@ -872,6 +856,8 @@ with pkgs; blink1-tool = callPackage ../tools/misc/blink1-tool { }; + bliss = callPackage ../applications/science/math/bliss { }; + blitz = callPackage ../development/libraries/blitz { boost = boost160; }; @@ -1405,6 +1391,8 @@ with pkgs; nwipe = callPackage ../tools/security/nwipe { }; + nyx = callPackage ../tools/networking/nyx { }; + onboard = callPackage ../applications/misc/onboard { }; optar = callPackage ../tools/graphics/optar {}; @@ -2102,7 +2090,6 @@ with pkgs; dolphinEmuMaster = callPackage ../misc/emulators/dolphin-emu/master.nix { inherit (darwin.apple_sdk.frameworks) CoreBluetooth ForceFeedback IOKit OpenGL; inherit (darwin) cf-private; - wxGTK = wxGTK31; }; doomseeker = qt5.callPackage ../applications/misc/doomseeker { }; @@ -2408,7 +2395,7 @@ with pkgs; flamerobin = callPackage ../applications/misc/flamerobin { }; - flashtool = callPackage_i686 ../development/mobile/flashtool { + flashtool = pkgsi686Linux.callPackage ../development/mobile/flashtool { platformTools = androidenv.platformTools; }; @@ -2422,6 +2409,8 @@ with pkgs; flvstreamer = callPackage ../tools/networking/flvstreamer { }; + hmetis = pkgsi686Linux.callPackage ../applications/science/math/hmetis { }; + libbsd = callPackage ../development/libraries/libbsd { }; libbladeRF = callPackage ../development/libraries/libbladeRF { }; @@ -2520,14 +2509,16 @@ with pkgs; fuseiso = callPackage ../tools/filesystems/fuseiso { }; - fdbPackages = callPackage ../servers/foundationdb { stdenv = overrideCC stdenv gcc49; }; + fdbPackages = callPackage ../servers/foundationdb { + stdenv49 = overrideCC stdenv gcc49; + }; inherit (fdbPackages) foundationdb51 foundationdb52 foundationdb60; - foundationdb = callPackage ../servers/foundationdb { stdenv = overrideCC stdenv gcc49; }; + foundationdb = foundationdb52; fuse-7z-ng = callPackage ../tools/filesystems/fuse-7z-ng { }; @@ -2715,6 +2706,8 @@ with pkgs; # must have AquaTerm installed separately gnuplot_aquaterm = gnuplot.override { aquaterm = true; }; + gnu-pw-mgr = callPackage ../tools/security/gnu-pw-mgr { }; + gnused = callPackage ../tools/text/gnused { }; # This is an easy work-around for [:space:] problems. gnused_422 = callPackage ../tools/text/gnused/422.nix { }; @@ -2725,7 +2718,7 @@ with pkgs; goaccess = callPackage ../tools/misc/goaccess { }; - gocryptfs = callPackage ../tools/filesystems/gocrypfs { }; + gocryptfs = callPackage ../tools/filesystems/gocryptfs { }; godot = callPackage ../development/tools/godot {}; @@ -2814,13 +2807,13 @@ with pkgs; groonga = callPackage ../servers/search/groonga { }; - grub = callPackage_i686 ../tools/misc/grub { + grub = pkgsi686Linux.callPackage ../tools/misc/grub { buggyBiosCDSupport = config.grub.buggyBiosCDSupport or true; }; - trustedGrub = callPackage_i686 ../tools/misc/grub/trusted.nix { }; + trustedGrub = pkgsi686Linux.callPackage ../tools/misc/grub/trusted.nix { }; - trustedGrub-for-HP = callPackage_i686 ../tools/misc/grub/trusted.nix { for_HP_laptop = true; }; + trustedGrub-for-HP = pkgsi686Linux.callPackage ../tools/misc/grub/trusted.nix { for_HP_laptop = true; }; grub2 = grub2_full; @@ -3300,7 +3293,7 @@ with pkgs; kbdd = callPackage ../applications/window-managers/kbdd { }; - kdbplus = callPackage_i686 ../applications/misc/kdbplus { }; + kdbplus = pkgsi686Linux.callPackage ../applications/misc/kdbplus { }; kde2-decoration = libsForQt5.callPackage ../misc/themes/kde2 { }; @@ -3419,7 +3412,7 @@ with pkgs; kippo = callPackage ../servers/kippo { }; - kzipmix = callPackage_i686 ../tools/compression/kzipmix { }; + kzipmix = pkgsi686Linux.callPackage ../tools/compression/kzipmix { }; mailcatcher = callPackage ../development/web/mailcatcher { }; @@ -3525,9 +3518,6 @@ with pkgs; nodejs-8_x = callPackage ../development/web/nodejs/v8.nix {}; nodejs-slim-8_x = callPackage ../development/web/nodejs/v8.nix { enableNpm = false; }; - nodejs-9_x = callPackage ../development/web/nodejs/v9.nix {}; - nodejs-slim-9_x = callPackage ../development/web/nodejs/v9.nix { enableNpm = false; }; - nodejs-10_x = callPackage ../development/web/nodejs/v10.nix { openssl = openssl_1_1_0; }; @@ -3718,7 +3708,7 @@ with pkgs; lzip = callPackage ../tools/compression/lzip { }; luxcorerender = callPackage ../tools/graphics/luxcorerender { }; - + xz = callPackage ../tools/compression/xz { }; lz4 = callPackage ../tools/compression/lz4 { }; @@ -4442,6 +4432,8 @@ with pkgs; pdf-redact-tools = callPackage ../tools/graphics/pdfredacttools { }; + pdfcrack = callPackage ../tools/security/pdfcrack { }; + pdf2svg = callPackage ../tools/graphics/pdf2svg { }; fmodex = callPackage ../games/zandronum/fmod.nix { }; @@ -4622,6 +4614,8 @@ with pkgs; ps3netsrv = callPackage ../servers/ps3netsrv { }; + pscircle = callPackage ../os-specific/linux/pscircle { }; + psmisc = callPackage ../os-specific/linux/psmisc { }; pssh = callPackage ../tools/networking/pssh { }; @@ -4983,7 +4977,7 @@ with pkgs; securefs = callPackage ../tools/filesystems/securefs { }; seexpr = callPackage ../development/compilers/seexpr { }; - + setroot = callPackage ../tools/X11/setroot { }; setserial = callPackage ../tools/system/setserial { }; @@ -5051,6 +5045,8 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreFoundation Security; }; + sixpair = callPackage ../tools/misc/sixpair {}; + skippy-xd = callPackage ../tools/X11/skippy-xd {}; sks = callPackage ../servers/sks { inherit (ocamlPackages_4_02) ocaml camlp4; }; @@ -5410,7 +5406,7 @@ with pkgs; torsocks = callPackage ../tools/security/tor/torsocks.nix { }; - toxvpn = callPackage ../tools/networking/toxvpn { libtoxcore = libtoxcore_0_1; }; + toxvpn = callPackage ../tools/networking/toxvpn { }; tpmmanager = callPackage ../applications/misc/tpmmanager { }; @@ -5540,6 +5536,8 @@ with pkgs; vacuum = callPackage ../applications/networking/instant-messengers/vacuum {}; + vampire = callPackage ../applications/science/logic/vampire {}; + volatility = callPackage ../tools/security/volatility { }; vbetool = callPackage ../tools/system/vbetool { }; @@ -5888,14 +5886,7 @@ with pkgs; xbursttools = callPackage ../tools/misc/xburst-tools { # It needs a cross compiler for mipsel to build the firmware it will # load into the Ben Nanonote - gccCross = - let - pkgsCross = nixpkgsFun { - # Ben Nanonote system - crossSystem = lib.systems.examples.ben-nanonote; - }; - in - pkgsCross.buildPackages.gccCrossStageStatic; + gccCross = pkgsCross.ben-nanonote.buildPackages.gccCrossStageStatic; }; xclip = callPackage ../tools/misc/xclip { }; @@ -6058,6 +6049,8 @@ with pkgs; bash-completion = callPackage ../shells/bash/bash-completion { }; + gradle-completion = callPackage ../shells/zsh/gradle-completion { }; + nix-bash-completions = callPackage ../shells/bash/nix-bash-completions { }; dash = callPackage ../shells/dash { }; @@ -6193,7 +6186,7 @@ with pkgs; cmdstan = callPackage ../development/compilers/cmdstan { }; - cmucl_binary = callPackage_i686 ../development/compilers/cmucl/binary.nix { }; + cmucl_binary = pkgsi686Linux.callPackage ../development/compilers/cmucl/binary.nix { }; compcert = callPackage ../development/compilers/compcert { }; @@ -6500,25 +6493,25 @@ with pkgs; gcl_2_6_13_pre = callPackage ../development/compilers/gcl/2.6.13-pre.nix { }; - gcc-arm-embedded-4_7 = callPackage_i686 ../development/compilers/gcc-arm-embedded { + gcc-arm-embedded-4_7 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { version = "4.7-2013q3-20130916"; releaseType = "update"; sha256 = "1bd9bi9q80xn2rpy0rn1vvj70rh15kb7dmah0qs4q2rv78fqj40d"; ncurses = pkgsi686Linux.ncurses5; }; - gcc-arm-embedded-4_8 = callPackage_i686 ../development/compilers/gcc-arm-embedded { + gcc-arm-embedded-4_8 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { version = "4.8-2014q1-20140314"; releaseType = "update"; sha256 = "ce92859550819d4a3d1a6e2672ea64882b30afa2c08cf67fa8e1d93788c2c577"; ncurses = pkgsi686Linux.ncurses5; }; - gcc-arm-embedded-4_9 = callPackage_i686 ../development/compilers/gcc-arm-embedded { + gcc-arm-embedded-4_9 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { version = "4.9-2015q1-20150306"; releaseType = "update"; sha256 = "c5e0025b065750bbd76b5357b4fc8606d88afbac9ff55b8a82927b4b96178154"; ncurses = pkgsi686Linux.ncurses5; }; - gcc-arm-embedded-5 = pkgs.callPackage_i686 ../development/compilers/gcc-arm-embedded { + gcc-arm-embedded-5 = pkgs.pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded { dirName = "5.0"; subdirName = "5-2016-q2-update"; version = "5.4-2016q2-20160622"; @@ -6884,7 +6877,7 @@ with pkgs; manticore = callPackage ../development/compilers/manticore { }; mentorToolchains = recurseIntoAttrs ( - callPackage_i686 ../development/compilers/mentor {} + pkgsi686Linux.callPackage ../development/compilers/mentor {} ); mercury = callPackage ../development/compilers/mercury { }; @@ -7071,7 +7064,7 @@ with pkgs; smlnjBootstrap = callPackage ../development/compilers/smlnj/bootstrap.nix { }; smlnj = if stdenv.isDarwin then callPackage ../development/compilers/smlnj { } - else callPackage_i686 ../development/compilers/smlnj { }; + else pkgsi686Linux.callPackage ../development/compilers/smlnj { }; solc = callPackage ../development/compilers/solc { }; @@ -7133,6 +7126,8 @@ with pkgs; valadoc = callPackage ../development/tools/valadoc { }; + wcc = callPackage ../development/compilers/wcc { }; + wla-dx = callPackage ../development/compilers/wla-dx { }; wrapCCWith = @@ -7580,7 +7575,7 @@ with pkgs; scheme48 = callPackage ../development/interpreters/scheme48 { }; - self = callPackage_i686 ../development/interpreters/self { }; + self = pkgsi686Linux.callPackage ../development/interpreters/self { }; spark = spark_22; spark_22 = callPackage ../applications/networking/cluster/spark { version = "2.2.1"; }; @@ -7714,6 +7709,8 @@ with pkgs; alloy = callPackage ../development/tools/alloy { }; + adtool = callPackage ../tools/admin/adtool { }; + augeas = callPackage ../tools/system/augeas { }; inherit (callPackages ../tools/admin/ansible {}) @@ -7787,7 +7784,9 @@ with pkgs; bazel_0_4 = callPackage ../development/tools/build-managers/bazel/0.4.nix { }; bazel = callPackage ../development/tools/build-managers/bazel { + inherit (darwin) cctools; inherit (darwin.apple_sdk.frameworks) CoreFoundation CoreServices Foundation; + binutils = binutils-unwrapped; }; bazel-buildtools = callPackage ../development/tools/build-managers/bazel/buildtools { }; @@ -10018,6 +10017,8 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreServices; }; + libde265 = callPackage ../development/libraries/libde265 {}; + libdevil = callPackage ../development/libraries/libdevil { inherit (darwin.apple_sdk.frameworks) OpenGL; }; @@ -10178,6 +10179,8 @@ with pkgs; libf2c = callPackage ../development/libraries/libf2c {}; + libfive = callPackage ../development/libraries/libfive {}; + libfixposix = callPackage ../development/libraries/libfixposix {}; libffcall = callPackage ../development/libraries/libffcall { }; @@ -10232,6 +10235,8 @@ with pkgs; libhdhomerun = callPackage ../development/libraries/libhdhomerun { }; + libheif = callPackage ../development/libraries/libheif {}; + libhttpseverywhere = callPackage ../development/libraries/libhttpseverywhere { }; libHX = callPackage ../development/libraries/libHX { }; @@ -12752,6 +12757,8 @@ with pkgs; lighttpd = callPackage ../servers/http/lighttpd { }; + livepeer = callPackage ../servers/livepeer { ffmpeg = ffmpeg_3; }; + lwan = callPackage ../servers/http/lwan { }; labelImg = callPackage ../applications/science/machine-learning/labelimg { }; @@ -13650,14 +13657,6 @@ with pkgs; modDirVersionArg = linux_4_14.modDirVersion + "-hardened"; }); - linux_copperhead_stable = (linux_4_16.override { - kernelPatches = linux_4_16.kernelPatches ++ [ - kernelPatches.copperhead_4_16 - kernelPatches.tag_hardened - ]; - modDirVersionArg = linux_4_16.modDirVersion + "-hardened"; - }); - # linux mptcp is based on the 4.4 kernel linux_mptcp = callPackage ../os-specific/linux/kernel/linux-mptcp.nix { kernelPatches = @@ -13713,17 +13712,6 @@ with pkgs; ]; }; - linux_4_16 = callPackage ../os-specific/linux/kernel/linux-4.16.nix { - kernelPatches = - [ kernelPatches.bridge_stp_helper - # See pkgs/os-specific/linux/kernel/cpu-cgroup-v2-patches/README.md - # when adding a new linux version - # kernelPatches.cpu-cgroup-v2."4.11" - kernelPatches.modinst_arg_list_too_long - kernelPatches.bcm2835_mmal_v4l2_camera_driver # Only needed for 4.16! - ]; - }; - linux_4_17 = callPackage ../os-specific/linux/kernel/linux-4.17.nix { kernelPatches = [ kernelPatches.bridge_stp_helper @@ -13938,7 +13926,6 @@ with pkgs; linuxPackages_4_4 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_4); linuxPackages_4_9 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_9); linuxPackages_4_14 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_14); - linuxPackages_4_16 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_16); linuxPackages_4_17 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_17); # Don't forget to update linuxPackages_latest! @@ -13991,7 +13978,6 @@ with pkgs; linuxPackages_latest_xen_dom0_hardened = recurseIntoAttrs (hardenedLinuxPackagesFor (pkgs.linux_latest.override { features.xen_dom0=true; })); linuxPackages_copperhead_lts = recurseIntoAttrs (hardenedLinuxPackagesFor pkgs.linux_copperhead_lts); - linuxPackages_copperhead_stable = recurseIntoAttrs (hardenedLinuxPackagesFor pkgs.linux_copperhead_stable); # Samus kernels linuxPackages_samus_4_12 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_samus_4_12); @@ -14235,6 +14221,8 @@ with pkgs; powertop = callPackage ../os-specific/linux/powertop { }; + pps-tools = callPackage ../os-specific/linux/pps-tools { }; + prayer = callPackage ../servers/prayer { }; procps-ng = if stdenv.isLinux then callPackage ../os-specific/linux/procps-ng { } @@ -14373,6 +14361,7 @@ with pkgs; ubootClearfog ubootGuruplug ubootJetsonTK1 + ubootNovena ubootOdroidXU3 ubootOrangePiPc ubootPcduino3Nano @@ -14919,6 +14908,8 @@ with pkgs; source-serif-pro = callPackage ../data/fonts/source-serif-pro { }; + source-han-code-jp = callPackage ../data/fonts/source-han-code-jp { }; + sourceHanSansPackages = callPackage ../data/fonts/source-han-sans { }; source-han-sans-japanese = sourceHanSansPackages.japanese; source-han-sans-korean = sourceHanSansPackages.korean; @@ -14946,6 +14937,8 @@ with pkgs; terminus_font_ttf = callPackage ../data/fonts/terminus-font-ttf { }; + termtekst = callPackage ../misc/emulators/termtekst { }; + tex-gyre = callPackages ../data/fonts/tex-gyre { }; tex-gyre-math = callPackages ../data/fonts/tex-gyre-math { }; @@ -15030,7 +15023,7 @@ with pkgs; requests requests_toolbelt sqlalchemy fusepy; }; - adobe-reader = callPackage_i686 ../applications/misc/adobe-reader { }; + adobe-reader = pkgsi686Linux.callPackage ../applications/misc/adobe-reader { }; masterpdfeditor = libsForQt5.callPackage ../applications/misc/masterpdfeditor { }; @@ -16636,6 +16629,8 @@ with pkgs; inherit (perlPackages.override { pkgs = pkgs // { imagemagick = imagemagickBig;}; }) PerlMagick; }; + iksemel = callPackage ../development/libraries/iksemel { }; + imagej = callPackage ../applications/graphics/imagej { }; imagemagick_light = imagemagick.override { @@ -16656,6 +16651,8 @@ with pkgs; libxml2 = null; openjpeg = null; libwebp = null; + libheif = null; + libde265 = null; }; imagemagick = callPackage ../applications/graphics/ImageMagick { @@ -16683,6 +16680,7 @@ with pkgs; libxml2 = null; openjpeg = null; libwebp = null; + libheif = null; }); imagemagick7 = lowPrio (imagemagick7Big.override { @@ -16698,7 +16696,7 @@ with pkgs; # Impressive, formerly known as "KeyJNote". impressive = callPackage ../applications/office/impressive { }; - inferno = callPackage_i686 ../applications/inferno { }; + inferno = pkgsi686Linux.callPackage ../applications/inferno { }; inginious = callPackage ../servers/inginious {}; @@ -16821,7 +16819,7 @@ with pkgs; keepnote = callPackage ../applications/office/keepnote { }; - kega-fusion = callPackage_i686 ../misc/emulators/kega-fusion { }; + kega-fusion = pkgsi686Linux.callPackage ../misc/emulators/kega-fusion { }; kermit = callPackage ../tools/misc/kermit { }; @@ -16964,6 +16962,8 @@ with pkgs; libreoffice = libreoffice-still-unwrapped; }); + libvmi = callPackage ../development/libraries/libvmi { }; + liferea = callPackage ../applications/networking/newsreaders/liferea { inherit (gnome3) libpeas gsettings-desktop-schemas dconf; }; @@ -17620,7 +17620,7 @@ with pkgs; ffmpeg = ffmpeg_2; }; - pcsx2 = callPackage_i686 ../misc/emulators/pcsx2 { }; + pcsx2 = pkgsi686Linux.callPackage ../misc/emulators/pcsx2 { }; pekwm = callPackage ../applications/window-managers/pekwm { }; @@ -17994,7 +17994,9 @@ with pkgs; rpcs3 = libsForQt5.callPackage ../misc/emulators/rpcs3 { }; - rstudio = libsForQt5.callPackage ../applications/editors/rstudio { }; + rstudio = libsForQt5.callPackage ../applications/editors/rstudio { + boost = boost166; + }; rsync = callPackage ../applications/networking/sync/rsync { enableACLs = !(stdenv.isDarwin || stdenv.isSunOS || stdenv.isFreeBSD); @@ -18424,6 +18426,8 @@ with pkgs; vte = gnome3.vte-ng; }; + termtosvg = callPackage ../tools/misc/termtosvg { }; + tesseract = callPackage ../applications/graphics/tesseract { }; tesseract_4 = lowPrio (callPackage ../applications/graphics/tesseract/4.x.nix { }); @@ -18835,6 +18839,8 @@ with pkgs; erlang = erlangR18; }; + write_stylus = libsForQt5.callPackage ../applications/graphics/write_stylus { }; + alsamixer.app = callPackage ../applications/window-managers/windowmaker/dockapps/alsamixer.app.nix { }; wllvm = callPackage ../development/tools/wllvm { }; @@ -19853,7 +19859,7 @@ with pkgs; terraria-server = callPackage ../games/terraria-server { }; - tibia = callPackage_i686 ../games/tibia { }; + tibia = pkgsi686Linux.callPackage ../games/tibia { }; tintin = callPackage ../games/tintin { }; @@ -19922,7 +19928,7 @@ with pkgs; vectoroids = callPackage ../games/vectoroids { }; - vessel = callPackage_i686 ../games/vessel { }; + vessel = pkgsi686Linux.callPackage ../games/vessel { }; vms-empire = callPackage ../games/vms-empire { }; @@ -20569,6 +20575,8 @@ with pkgs; minisat = callPackage ../applications/science/logic/minisat {}; minisatUnstable = callPackage ../applications/science/logic/minisat/unstable.nix {}; + monosat = callPackage ../applications/science/logic/monosat {}; + opensmt = callPackage ../applications/science/logic/opensmt { }; ott = callPackage ../applications/science/logic/ott { }; @@ -20912,7 +20920,7 @@ with pkgs; bootil = callPackage ../development/libraries/bootil { }; - brgenml1lpr = callPackage_i686 ../misc/cups/drivers/brgenml1lpr {}; + brgenml1lpr = pkgsi686Linux.callPackage ../misc/cups/drivers/brgenml1lpr {}; brgenml1cupswrapper = callPackage ../misc/cups/drivers/brgenml1cupswrapper {}; @@ -20961,10 +20969,10 @@ with pkgs; cups-bjnp = callPackage ../misc/cups/drivers/cups-bjnp { }; - cups-brother-hl1110 = callPackage_i686 ../misc/cups/drivers/hl1110 { }; + cups-brother-hl1110 = pkgsi686Linux.callPackage ../misc/cups/drivers/hl1110 { }; # this driver ships with pre-compiled 32-bit binary libraries - cnijfilter_2_80 = callPackage_i686 ../misc/cups/drivers/cnijfilter_2_80 { }; + cnijfilter_2_80 = pkgsi686Linux.callPackage ../misc/cups/drivers/cnijfilter_2_80 { }; cnijfilter_4_00 = callPackage ../misc/cups/drivers/cnijfilter_4_00 { libusb = libusb1; @@ -21054,7 +21062,7 @@ with pkgs; gammu = callPackage ../applications/misc/gammu { }; - gensgs = callPackage_i686 ../misc/emulators/gens-gs { }; + gensgs = pkgsi686Linux.callPackage ../misc/emulators/gens-gs { }; ghostscript = callPackage ../misc/ghostscript rec { cupsSupport = config.ghostscript.cups or (!stdenv.isDarwin); @@ -21066,6 +21074,8 @@ with pkgs; x11Support = true; }); + glava = callPackage ../applications/misc/glava {}; + gnome-breeze = callPackage ../misc/themes/gnome-breeze { }; gnuk = callPackage ../misc/gnuk { @@ -21155,12 +21165,15 @@ with pkgs; mupen64plus = callPackage ../misc/emulators/mupen64plus { }; + muse = callPackage ../applications/audio/muse { }; + mynewt-newt = callPackage ../tools/package-management/mynewt-newt { }; inherit (callPackages ../tools/package-management/nix { storeDir = config.nix.storeDir or "/nix/store"; stateDir = config.nix.stateDir or "/nix/var"; curl = curl_7_59; + boehmgc = boehmgc.override { enableLargeConfig = true; }; }) nix nix1 @@ -21393,17 +21406,20 @@ with pkgs; hll2390dw-cups = callPackage ../misc/cups/drivers/hll2390dw-cups { }; mfcj470dw-cupswrapper = callPackage ../misc/cups/drivers/mfcj470dwcupswrapper { }; - mfcj470dwlpr = callPackage_i686 ../misc/cups/drivers/mfcj470dwlpr { }; + mfcj470dwlpr = pkgsi686Linux.callPackage ../misc/cups/drivers/mfcj470dwlpr { }; mfcj6510dw-cupswrapper = callPackage ../misc/cups/drivers/mfcj6510dwcupswrapper { }; - mfcj6510dwlpr = callPackage_i686 ../misc/cups/drivers/mfcj6510dwlpr { }; + mfcj6510dwlpr = pkgsi686Linux.callPackage ../misc/cups/drivers/mfcj6510dwlpr { }; mfcl2700dncupswrapper = callPackage ../misc/cups/drivers/mfcl2700dncupswrapper { }; - mfcl2700dnlpr = callPackage_i686 ../misc/cups/drivers/mfcl2700dnlpr { }; + mfcl2700dnlpr = pkgsi686Linux.callPackage ../misc/cups/drivers/mfcl2700dnlpr { }; mfcl2720dwcupswrapper = callPackage ../misc/cups/drivers/mfcl2720dwcupswrapper { }; mfcl2720dwlpr = callPackage ../misc/cups/drivers/mfcl2720dwlpr { }; + mfcl2740dwcupswrapper = callPackage ../misc/cups/drivers/mfcl2740dwcupswrapper { }; + mfcl2740dwlpr = callPackage ../misc/cups/drivers/mfcl2740dwlpr { }; + samsung-unified-linux-driver_1_00_37 = callPackage ../misc/cups/drivers/samsung { }; samsung-unified-linux-driver_4_01_17 = callPackage ../misc/cups/drivers/samsung/4.01.17.nix { }; samsung-unified-linux-driver = callPackage ../misc/cups/drivers/samsung/4.00.39 { }; @@ -21596,7 +21612,17 @@ with pkgs; pythonPackages = python3Packages; }; - winePackages = recurseIntoAttrs (callPackage ./wine-packages.nix { }); + winePackagesFor = wineBuild: lib.makeExtensible (self: with self; { + callPackage = newScope self; + + inherit wineBuild; + + inherit (callPackage ./wine-packages.nix {}) + minimal base full stable unstable staging; + }); + + winePackages = recurseIntoAttrs (winePackagesFor (config.wine.build or "wine32")); + wineWowPackages = recurseIntoAttrs (winePackagesFor "wineWow"); wine = winePackages.full; @@ -21705,7 +21731,7 @@ with pkgs; callPackage ../applications/networking/znc/modules.nix { } ); - zsnes = callPackage_i686 ../misc/emulators/zsnes { }; + zsnes = pkgsi686Linux.callPackage ../misc/emulators/zsnes { }; xcpc = callPackage ../misc/emulators/xcpc { }; diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix index a6044c7d6c4b..cb8135294b83 100644 --- a/pkgs/top-level/haskell-packages.nix +++ b/pkgs/top-level/haskell-packages.nix @@ -156,6 +156,11 @@ in rec { ghc = bh.compiler.ghc843; compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.4.x.nix { }; }; + ghc861 = callPackage ../development/haskell-modules { + buildHaskellPackages = bh.packages.ghc861; + ghc = bh.compiler.ghc861; + compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.6.x.nix { }; + }; ghcHEAD = callPackage ../development/haskell-modules { buildHaskellPackages = bh.packages.ghcHEAD; ghc = bh.compiler.ghcHEAD; diff --git a/pkgs/top-level/lua-packages.nix b/pkgs/top-level/lua-packages.nix index 311bb1eb63f0..017b9fca3f93 100644 --- a/pkgs/top-level/lua-packages.nix +++ b/pkgs/top-level/lua-packages.nix @@ -634,6 +634,26 @@ let }; }; + lfs = buildLuaPackage rec { + name = "lfs-${version}"; + version = "1.7.0.2"; + + src = fetchFromGitHub { + owner = "keplerproject"; + repo = "luafilesystem"; + rev = "v" + stdenv.lib.replaceStrings ["."] ["_"] version; + sha256 = "0zmprgkm9zawdf9wnw0v3w6ibaj442wlc6alp39hmw610fl4vghi"; + }; + + meta = with stdenv.lib; { + description = "Portable library for filesystem operations"; + homepage = https://keplerproject.github.com/luafilesystem; + license = licenses.mit; + maintainers = with maintainers; [ vcunat ]; + platforms = platforms.all; + }; + }; + lpeg = buildLuaPackage rec { name = "lpeg-${version}"; version = "0.12"; diff --git a/pkgs/top-level/make-tarball.nix b/pkgs/top-level/make-tarball.nix index ccd7b89fc12d..f7f128547bae 100644 --- a/pkgs/top-level/make-tarball.nix +++ b/pkgs/top-level/make-tarball.nix @@ -42,7 +42,7 @@ releaseTools.sourceTarball rec { echo 'abort "Illegal use of <nixpkgs> in Nixpkgs."' > $TMPDIR/barf.nix - # Make sure that Nixpkgs does not use <nixpkgs> + # Make sure that Nixpkgs does not use <nixpkgs>. badFiles=$(find pkgs -type f -name '*.nix' -print | xargs grep -l '^[^#]*<nixpkgs\/' || true) if [[ -n $badFiles ]]; then echo "Nixpkgs is not allowed to use <nixpkgs> to refer to itself." @@ -101,7 +101,7 @@ releaseTools.sourceTarball rec { stopNest header "checking find-tarballs.nix" - nix-instantiate --eval --strict --show-trace --json \ + nix-instantiate --readonly-mode --eval --strict --show-trace --json \ ./maintainers/scripts/find-tarballs.nix \ --arg expr 'import ./maintainers/scripts/all-tarballs.nix' > $TMPDIR/tarballs.json nrUrls=$(jq -r '.[].url' < $TMPDIR/tarballs.json | wc -l) diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 87e1cf907f52..a0e91a8e0932 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -56,6 +56,17 @@ let bap = callPackage ../development/ocaml-modules/bap { inherit (janeStreet_0_9_0) core_kernel ppx_jane parsexp; + ezjsonm = ezjsonm.override { + inherit (janeStreet_0_9_0) sexplib; + hex = hex.override { + cstruct = cstruct.override { + inherit (janeStreet_0_9_0) sexplib; + }; + }; + }; + uri = uri.override { + inherit (janeStreet_0_9_0) ppx_sexp_conv sexplib; + }; }; batteries = callPackage ../development/ocaml-modules/batteries { }; @@ -531,6 +542,8 @@ let piqi = callPackage ../development/ocaml-modules/piqi { }; piqi-ocaml = callPackage ../development/ocaml-modules/piqi-ocaml { }; + ppxlib = callPackage ../development/ocaml-modules/ppxlib { }; + psmt2-frontend = callPackage ../development/ocaml-modules/psmt2-frontend { }; psq = callPackage ../development/ocaml-modules/psq { }; @@ -735,7 +748,7 @@ let janeStreet = import ../development/ocaml-modules/janestreet { inherit lib janePackage ocaml ocamlbuild angstrom ctypes cryptokit; inherit magic-mime num ocaml-migrate-parsetree octavius ounit; - inherit ppx_deriving re zarith; + inherit ppx_deriving re zarith ppxlib; inherit (pkgs) stdenv openssl; }; diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 1563176c39a0..0cbd5f0b468b 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -195,6 +195,8 @@ in { inherit (pkgs) augeas; }; + authres = callPackage ../development/python-modules/authres { }; + autograd = callPackage ../development/python-modules/autograd { }; automat = callPackage ../development/python-modules/automat { }; @@ -263,6 +265,8 @@ in { distorm3 = callPackage ../development/python-modules/distorm3 { }; + dogtail = callPackage ../development/python-modules/dogtail { }; + diff-match-patch = callPackage ../development/python-modules/diff-match-patch { }; fido2 = callPackage ../development/python-modules/fido2 { }; @@ -440,6 +444,8 @@ in { python-periphery = callPackage ../development/python-modules/python-periphery { }; + python-prctl = callPackage ../development/python-modules/python-prctl { }; + python-sql = callPackage ../development/python-modules/python-sql { }; python-stdnum = callPackage ../development/python-modules/python-stdnum { }; @@ -6247,8 +6253,6 @@ in { google_cloud_speech = callPackage ../development/python-modules/google_cloud_speech { }; - google_gax = callPackage ../development/python-modules/google_gax { }; - gpgme = toPythonModule (pkgs.gpgme.override { withPython=true; }); grammalecte = callPackage ../development/python-modules/grammalecte { }; @@ -6263,6 +6267,8 @@ in { grpcio = callPackage ../development/python-modules/grpcio { }; + grpcio-tools = callPackage ../development/python-modules/grpcio-tools { }; + gspread = buildPythonPackage rec { version = "0.2.3"; name = "gspread-${version}"; @@ -8277,6 +8283,8 @@ in { }; }; + monosat = disabledIf (!isPy3k) (pkgs.monosat.python { inherit buildPythonPackage; inherit (self) cython; }); + monotonic = buildPythonPackage rec { pname = "monotonic"; version = "1.3"; diff --git a/pkgs/top-level/release.nix b/pkgs/top-level/release.nix index f78152a8931c..81f0874ca12d 100644 --- a/pkgs/top-level/release.nix +++ b/pkgs/top-level/release.nix @@ -25,6 +25,8 @@ let systemsWithAnySupport = supportedSystems ++ limitedSupportedSystems; + supportDarwin = builtins.elem "x86_64-darwin" systemsWithAnySupport; + jobs = { tarball = import ./make-tarball.nix { inherit pkgs nixpkgs officialRelease; }; @@ -33,7 +35,7 @@ let manual = import ../../doc; lib-tests = import ../../lib/tests/release.nix { inherit pkgs; }; - darwin-tested = pkgs.releaseTools.aggregate + darwin-tested = if supportDarwin then pkgs.releaseTools.aggregate { name = "nixpkgs-darwin-${jobs.tarball.version}"; meta.description = "Release-critical builds for the Nixpkgs darwin channel"; constituents = @@ -66,7 +68,7 @@ let jobs.tests.stdenv-inputs.x86_64-darwin jobs.tests.macOSSierraShared.x86_64-darwin ]; - }; + } else null; unstable = pkgs.releaseTools.aggregate { name = "nixpkgs-${jobs.tarball.version}"; @@ -77,65 +79,66 @@ let jobs.manual jobs.lib-tests jobs.stdenv.x86_64-linux - jobs.stdenv.x86_64-darwin jobs.linux.x86_64-linux jobs.python.x86_64-linux - jobs.python.x86_64-darwin jobs.python3.x86_64-linux - jobs.python3.x86_64-darwin # Needed by travis-ci to test PRs jobs.nox.x86_64-linux - jobs.nox.x86_64-darwin # Needed for support jobs.nix-info.x86_64-linux - jobs.nix-info.x86_64-darwin jobs.nix-info-tested.x86_64-linux - jobs.nix-info-tested.x86_64-darwin # Ensure that X11/GTK+ are in order. jobs.thunderbird.x86_64-linux - # Ensure that basic stuff works on darwin - jobs.git.x86_64-darwin - jobs.mariadb.x86_64-darwin - jobs.vim.x86_64-darwin - # Ensure that UI stuff works on darwin - jobs.inkscape.x86_64-darwin - jobs.qt5.qtmultimedia.x86_64-darwin jobs.tests.cc-wrapper.x86_64-linux - jobs.tests.cc-wrapper.x86_64-darwin jobs.tests.cc-wrapper-gcc7.x86_64-linux - jobs.tests.cc-wrapper-gcc7.x86_64-darwin jobs.tests.cc-wrapper-gcc8.x86_64-linux # broken see issue #40038 - # jobs.tests.cc-wrapper-gcc8.x86_64-darwin jobs.tests.cc-wrapper-clang.x86_64-linux - jobs.tests.cc-wrapper-clang.x86_64-darwin jobs.tests.cc-wrapper-libcxx.x86_64-linux - jobs.tests.cc-wrapper-libcxx.x86_64-darwin jobs.tests.cc-wrapper-clang-39.x86_64-linux - jobs.tests.cc-wrapper-clang-39.x86_64-darwin jobs.tests.cc-wrapper-libcxx-39.x86_64-linux - jobs.tests.cc-wrapper-libcxx-39.x86_64-darwin jobs.tests.cc-wrapper-clang-4.x86_64-linux - jobs.tests.cc-wrapper-clang-4.x86_64-darwin jobs.tests.cc-wrapper-libcxx-4.x86_64-linux - jobs.tests.cc-wrapper-libcxx-4.x86_64-darwin jobs.tests.cc-wrapper-clang-5.x86_64-linux - jobs.tests.cc-wrapper-clang-5.x86_64-darwin jobs.tests.cc-wrapper-libcxx-5.x86_64-linux - jobs.tests.cc-wrapper-libcxx-6.x86_64-darwin jobs.tests.cc-wrapper-clang-6.x86_64-linux - jobs.tests.cc-wrapper-clang-6.x86_64-darwin jobs.tests.cc-wrapper-libcxx-6.x86_64-linux - jobs.tests.cc-wrapper-libcxx-6.x86_64-darwin jobs.tests.cc-multilib-gcc.x86_64-linux jobs.tests.cc-multilib-clang.x86_64-linux jobs.tests.stdenv-inputs.x86_64-linux + ] + ++ lib.collect lib.isDerivation jobs.stdenvBootstrapTools + ++ lib.optionals supportDarwin [ + jobs.stdenv.x86_64-darwin + jobs.python.x86_64-darwin + jobs.python3.x86_64-darwin + jobs.nox.x86_64-darwin + jobs.nix-info.x86_64-darwin + jobs.nix-info-tested.x86_64-darwin + jobs.git.x86_64-darwin + jobs.mariadb.x86_64-darwin + jobs.vim.x86_64-darwin + jobs.inkscape.x86_64-darwin + jobs.qt5.qtmultimedia.x86_64-darwin + jobs.tests.cc-wrapper.x86_64-darwin + jobs.tests.cc-wrapper-gcc7.x86_64-darwin + # jobs.tests.cc-wrapper-gcc8.x86_64-darwin + jobs.tests.cc-wrapper-clang.x86_64-darwin + jobs.tests.cc-wrapper-libcxx.x86_64-darwin + jobs.tests.cc-wrapper-clang-39.x86_64-darwin + jobs.tests.cc-wrapper-libcxx-39.x86_64-darwin + jobs.tests.cc-wrapper-clang-4.x86_64-darwin + jobs.tests.cc-wrapper-libcxx-4.x86_64-darwin + jobs.tests.cc-wrapper-clang-5.x86_64-darwin + jobs.tests.cc-wrapper-libcxx-6.x86_64-darwin + jobs.tests.cc-wrapper-clang-6.x86_64-darwin + jobs.tests.cc-wrapper-libcxx-6.x86_64-darwin jobs.tests.stdenv-inputs.x86_64-darwin jobs.tests.macOSSierraShared.x86_64-darwin - ] ++ lib.collect lib.isDerivation jobs.stdenvBootstrapTools; + ]; }; stdenvBootstrapTools = with lib; @@ -148,7 +151,7 @@ let dist test; }) # darwin is special in this - // optionalAttrs (builtins.elem "x86_64-darwin" systemsWithAnySupport) { + // optionalAttrs supportDarwin { x86_64-darwin = let bootstrap = import ../stdenv/darwin/make-bootstrap-tools.nix { system = "x86_64-darwin"; }; diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix index f9941a1c500d..cc70950c497c 100644 --- a/pkgs/top-level/stage.nix +++ b/pkgs/top-level/stage.nix @@ -93,7 +93,7 @@ let allPackages = self: super: let res = import ./all-packages.nix - { inherit lib nixpkgsFun noSysDirs config; } + { inherit lib noSysDirs config; } res self; in res; @@ -117,6 +117,49 @@ let lib.optionalAttrs allowCustomOverrides ((config.packageOverrides or (super: {})) super); + # Convenience attributes for instantitating package sets. Each of + # these will instantiate a new version of allPackages. Currently the + # following package sets are provided: + # + # - pkgsCross.<system> where system is a member of lib.systems.examples + # - pkgsMusl + # - pkgsi686Linux + otherPackageSets = self: super: { + # This maps each entry in lib.systems.examples to its own package + # set. Each of these will contain all packages cross compiled for + # that target system. For instance, pkgsCross.rasberryPi.hello, + # will refer to the "hello" package built for the ARM6-based + # Raspberry Pi. + pkgsCross = lib.mapAttrs (n: crossSystem: + nixpkgsFun { inherit crossSystem; }) + lib.systems.examples; + + # All packages built with the Musl libc. This will override the + # default GNU libc on Linux systems. Non-Linux systems are not + # supported. + pkgsMusl = if stdenv.hostPlatform.isLinux then nixpkgsFun { + localSystem = { + parsed = stdenv.hostPlatform.parsed // { + abi = { + "gnu" = lib.systems.parse.abis.musl; + "gnueabi" = lib.systems.parse.abis.musleabi; + "gnueabihf" = lib.systems.parse.abis.musleabihf; + }.${stdenv.hostPlatform.parsed.abi.name} or lib.systems.parse.abis.musl; + }; + }; + } else throw "Musl libc only supports Linux systems."; + + # All packages built for i686 Linux. + # Used by wine, firefox with debugging version of Flash, ... + pkgsi686Linux = assert stdenv.hostPlatform.isLinux; nixpkgsFun { + localSystem = { + parsed = stdenv.hostPlatform.parsed // { + cpu = lib.systems.parse.cpuTypes.i686; + }; + }; + }; + }; + # The complete chain of package set builders, applied from top to bottom. # stdenvOverlays must be last as it brings package forward from the # previous bootstrapping phases which have already been overlayed. @@ -127,6 +170,7 @@ let trivialBuilders splice allPackages + otherPackageSets aliases configOverrides ] ++ overlays ++ [ diff --git a/pkgs/top-level/wine-packages.nix b/pkgs/top-level/wine-packages.nix index 109f01362555..8ff2d46c24e0 100644 --- a/pkgs/top-level/wine-packages.nix +++ b/pkgs/top-level/wine-packages.nix @@ -1,9 +1,9 @@ -{ stdenv, config, callPackage }: +{ stdenv, config, callPackage, wineBuild }: rec { minimal = callPackage ../misc/emulators/wine { wineRelease = config.wine.release or "stable"; - wineBuild = config.wine.build or "wine32"; + inherit wineBuild; }; base = minimal.override { |