diff options
| -rw-r--r-- | lib/maintainers.nix | 1 | ||||
| -rw-r--r-- | pkgs/applications/science/biology/kallisto/default.nix | 25 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
3 files changed, 28 insertions, 0 deletions
diff --git a/lib/maintainers.nix b/lib/maintainers.nix index 5614627db0d8..ba5ee757a7cd 100644 --- a/lib/maintainers.nix +++ b/lib/maintainers.nix @@ -55,6 +55,7 @@ antonxy = "Anton Schirg <anton.schirg@posteo.de>"; apeschar = "Albert Peschar <albert@peschar.net>"; apeyroux = "Alexandre Peyroux <alex@px.io>"; + arcadio = "Arcadio Rubio García <arc@well.ox.ac.uk>"; ardumont = "Antoine R. Dumont <eniotna.t@gmail.com>"; aristid = "Aristid Breitkreuz <aristidb@gmail.com>"; arobyn = "Alexei Robyn <shados@shados.net>"; diff --git a/pkgs/applications/science/biology/kallisto/default.nix b/pkgs/applications/science/biology/kallisto/default.nix new file mode 100644 index 000000000000..d80ffea9a780 --- /dev/null +++ b/pkgs/applications/science/biology/kallisto/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }: + +stdenv.mkDerivation rec { + name = "kallisto-${version}"; + version = "0.43.1"; + + src = fetchFromGitHub { + repo = "kallisto"; + owner = "pachterlab"; + rev = "v${version}"; + sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz"; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ hdf5 zlib ]; + + meta = with stdenv.lib; { + description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data"; + homepage = https://pachterlab.github.io/kallisto; + license = licenses.bsd2; + platforms = platforms.linux; + maintainers = [ maintainers.arcadio ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 4b3a5223f10e..a48f43fc9ffe 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -18945,6 +18945,8 @@ with pkgs; neuron-version = neuron.version; }; + kallisto = callPackage ../applications/science/biology/kallisto { }; + neuron = callPackage ../applications/science/biology/neuron { python = null; }; |