diff options
566 files changed, 15878 insertions, 6523 deletions
diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index 6a1cf6e4ee86..24983cb52878 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -50,3 +50,6 @@ pkgs/development/tools/erlang/* @gleber # Jetbrains pkgs/applications/editors/jetbrains @edwtjo + +# Eclipse +pkgs/applications/editors/eclipse @rycee diff --git a/doc/package-notes.xml b/doc/package-notes.xml index e1aea62f7848..4d87a3a67fe9 100644 --- a/doc/package-notes.xml +++ b/doc/package-notes.xml @@ -477,32 +477,18 @@ it. Place the resulting <filename>package.nix</filename> file into <varlistentry> <term>Using the FOSS Radeon or nouveau (nvidia) drivers</term> - <listitem><itemizedlist><listitem><para> - Both the open source radeon drivers as well as the nouveau drivers (nvidia) - need a newer libc++ than is provided by the default runtime, which leads to a - crash on launch. Use <programlisting>environment.systemPackages = - [(pkgs.steam.override { newStdcpp = true; })];</programlisting> in your config - if you get an error like - <programlisting> -libGL error: unable to load driver: radeonsi_dri.so -libGL error: driver pointer missing -libGL error: failed to load driver: radeonsi -libGL error: unable to load driver: swrast_dri.so -libGL error: failed to load driver: swrast</programlisting> - or - <programlisting> -libGL error: unable to load driver: nouveau_dri.so -libGL error: driver pointer missing -libGL error: failed to load driver: nouveau -libGL error: unable to load driver: swrast_dri.so -libGL error: failed to load driver: swrast</programlisting></para></listitem> - <listitem><para> - Steam ships statically linked with a version of libcrypto that - conflics with the one dynamically loaded by radeonsi_dri.so. - If you get the error - <programlisting>steam.sh: line 713: 7842 Segmentation fault (core dumped)</programlisting> - have a look at <link xlink:href="https://github.com/NixOS/nixpkgs/pull/20269">this pull request</link>. - </para></listitem> + <listitem><itemizedlist> + <listitem><para>The <literal>newStdcpp</literal> parameter + was removed since NixOS 17.09 and should not be needed anymore. + </para></listitem> + + <listitem><para> + Steam ships statically linked with a version of libcrypto that + conflics with the one dynamically loaded by radeonsi_dri.so. + If you get the error + <programlisting>steam.sh: line 713: 7842 Segmentation fault (core dumped)</programlisting> + have a look at <link xlink:href="https://github.com/NixOS/nixpkgs/pull/20269">this pull request</link>. + </para></listitem> </itemizedlist></listitem></varlistentry> diff --git a/lib/licenses.nix b/lib/licenses.nix index a790b576032d..1bb153ce4c31 100644 --- a/lib/licenses.nix +++ b/lib/licenses.nix @@ -281,6 +281,11 @@ lib.mapAttrs (n: v: v // { shortName = n; }) rec { url = https://fedoraproject.org/wiki/Licensing/GPL_Classpath_Exception; }; + hpnd = spdx { + spdxId = "HPND"; + fullName = "Historic Permission Notice and Disclaimer"; + }; + # Intel's license, seems free iasl = { fullName = "iASL"; diff --git a/lib/maintainers.nix b/lib/maintainers.nix index 1feb528fd87b..ccde5c5e25b0 100644 --- a/lib/maintainers.nix +++ b/lib/maintainers.nix @@ -136,6 +136,7 @@ dancek = "Hannu Hartikainen <hannu.hartikainen@gmail.com>"; danielfullmer = "Daniel Fullmer <danielrf12@gmail.com>"; dasuxullebt = "Christoph-Simon Senjak <christoph.senjak@googlemail.com>"; + david50407 = "David Kuo <me@davy.tw>"; davidak = "David Kleuker <post@davidak.de>"; davidrusu = "David Rusu <davidrusu.me@gmail.com>"; davorb = "Davor Babic <davor@davor.se>"; @@ -200,6 +201,7 @@ fadenb = "Tristan Helmich <tristan.helmich+nixos@gmail.com>"; falsifian = "James Cook <james.cook@utoronto.ca>"; fare = "Francois-Rene Rideau <fahree@gmail.com>"; + fgaz = "Francesco Gazzetta <francygazz@gmail.com>"; florianjacob = "Florian Jacob <projects+nixos@florianjacob.de>"; flosse = "Markus Kohlhase <mail@markus-kohlhase.de>"; fluffynukeit = "Daniel Austin <dan@fluffynukeit.com>"; @@ -286,6 +288,7 @@ joelmo = "Joel Moberg <joel.moberg@gmail.com>"; joelteon = "Joel Taylor <me@joelt.io>"; johbo = "Johannes Bornhold <johannes@bornhold.name>"; + johnmh = "John M. Harris, Jr. <johnmh@openblox.org>"; johnramsden = "John Ramsden <johnramsden@riseup.net>"; joko = "Ioannis Koutras <ioannis.koutras@gmail.com>"; jonafato = "Jon Banafato <jon@jonafato.com>"; @@ -372,6 +375,7 @@ meditans = "Carlo Nucera <meditans@gmail.com>"; meisternu = "Matt Miemiec <meister@krutt.org>"; metabar = "Celine Mercier <softs@metabarcoding.org>"; + mgdelacroix = "Miguel de la Cruz <mgdelacroix@gmail.com>"; mguentner = "Maximilian Güntner <code@klandest.in>"; mic92 = "Jörg Thalheim <joerg@thalheim.io>"; michaelpj = "Michael Peyton Jones <michaelpj@gmail.com>"; @@ -381,7 +385,6 @@ mikefaille = "Michaël Faille <michael@faille.io>"; miltador = "Vasiliy Solovey <miltador@yandex.ua>"; mimadrid = "Miguel Madrid <mimadrid@ucm.es>"; - mingchuan = "Ming Chuan <ming@culpring.com>"; mirdhyn = "Merlin Gaillard <mirdhyn@gmail.com>"; mirrexagon = "Andrew Abbott <mirrexagon@mirrexagon.com>"; mjanczyk = "Marcin Janczyk <m@dragonvr.pl>"; @@ -455,6 +458,7 @@ periklis = "theopompos@gmail.com"; pesterhazy = "Paulus Esterhazy <pesterhazy@gmail.com>"; peterhoeg = "Peter Hoeg <peter@hoeg.com>"; + peterromfeldhk = "Peter Romfeld <peter.romfeld.hk@gmail.com>"; peti = "Peter Simons <simons@cryp.to>"; philandstuff = "Philip Potter <philip.g.potter@gmail.com>"; phile314 = "Philipp Hausmann <nix@314.ch>"; @@ -547,8 +551,10 @@ shell = "Shell Turner <cam.turn@gmail.com>"; shlevy = "Shea Levy <shea@shealevy.com>"; siddharthist = "Langston Barrett <langston.barrett@gmail.com>"; + sifmelcara = "Ming Chuan <ming@culpring.com>"; sigma = "Yann Hodique <yann.hodique@gmail.com>"; simonvandel = "Simon Vandel Sillesen <simon.vandel@gmail.com>"; + sivteck = "Sivaram Balakrishnan <sivaram1992@gmail.com>"; sjagoe = "Simon Jagoe <simon@simonjagoe.com>"; sjmackenzie = "Stewart Mackenzie <setori88@gmail.com>"; sjourdois = "Stéphane ‘kwisatz’ Jourdois <sjourdois@gmail.com>"; @@ -570,10 +576,12 @@ sternenseemann = "Lukas Epple <post@lukasepple.de>"; stesie = "Stefan Siegl <stesie@brokenpipe.de>"; steveej = "Stefan Junker <mail@stefanjunker.de>"; + stumoss = "Stuart Moss <samoss@gmail.com>"; SuprDewd = "Bjarki Ágúst Guðmundsson <suprdewd@gmail.com>"; swarren83 = "Shawn Warren <shawn.w.warren@gmail.com>"; swflint = "Samuel W. Flint <swflint@flintfam.org>"; swistak35 = "Rafał Łasocha <me@swistak35.com>"; + symphorien = "Guillaume Girol <symphorien_nixpkgs@xlumurb.eu>"; szczyp = "Szczyp <qb@szczyp.com>"; sztupi = "Attila Sztupak <attila.sztupak@gmail.com>"; taeer = "Taeer Bar-Yam <taeer@necsi.edu>"; @@ -583,6 +591,7 @@ taku0 = "Takuo Yonezawa <mxxouy6x3m_github@tatapa.org>"; tari = "Peter Marheine <peter@taricorp.net>"; tavyc = "Octavian Cerna <octavian.cerna@gmail.com>"; + TealG = "Teal Gaure <~@Teal.Gr>"; teh = "Tom Hunger <tehunger@gmail.com>"; telotortium = "Robert Irelan <rirelan@gmail.com>"; teto = "Matthieu Coudron <mcoudron@hotmail.com>"; @@ -652,6 +661,7 @@ xvapx = "Marti Serra <marti.serra.coscollano@gmail.com>"; xwvvvvwx = "David Terry <davidterry@posteo.de>"; yarr = "Dmitry V. <savraz@gmail.com>"; + yegortimoshenko = "Yegor Timoshenko <yegortimoshenko@gmail.com>"; yochai = "Yochai <yochai@titat.info>"; yorickvp = "Yorick van Pelt <yorickvanpelt@gmail.com>"; yuriaisaka = "Yuri Aisaka <yuri.aisaka+nix@gmail.com>"; diff --git a/lib/types.nix b/lib/types.nix index 62c6a978af90..c48e3b3000ce 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -240,25 +240,6 @@ rec { functor = (defaultFunctor name) // { wrapped = elemType; }; }; - # List or element of ... - loeOf = elemType: mkOptionType rec { - name = "loeOf"; - description = "element or list of ${elemType.description}s"; - check = x: isList x || elemType.check x; - merge = loc: defs: - let - defs' = filterOverrides defs; - res = (head defs').value; - in - if isList res then concatLists (getValues defs') - else if lessThan 1 (length defs') then - throw "The option `${showOption loc}' is defined multiple times, in ${showFiles (getFiles defs)}." - else if !isString res then - throw "The option `${showOption loc}' does not have a string value, in ${showFiles (getFiles defs)}." - else res; - functor = (defaultFunctor name) // { wrapped = elemType; }; - }; - # Value of given type but with no merging (i.e. `uniq list`s are not concatenated). uniq = elemType: mkOptionType rec { name = "uniq"; diff --git a/maintainers/scripts/gnome.sh b/maintainers/scripts/gnome.sh index f77dc5a9e64c..d44bda53f8d6 100755 --- a/maintainers/scripts/gnome.sh +++ b/maintainers/scripts/gnome.sh @@ -6,7 +6,7 @@ GNOME_FTP=ftp.gnome.org/pub/GNOME/sources # projects that don't follow the GNOME major versioning, or that we don't want to # programmatically update -NO_GNOME_MAJOR="ghex gtkhtml gdm" +NO_GNOME_MAJOR="ghex gtkhtml gdm gucharmap" usage() { echo "Usage: $0 <show project>|<update project>|<update-all> [major.minor]" >&2 diff --git a/nixos/doc/manual/release-notes/release-notes.xml b/nixos/doc/manual/release-notes/release-notes.xml index 6065a86f60d8..5ed56bde6659 100644 --- a/nixos/doc/manual/release-notes/release-notes.xml +++ b/nixos/doc/manual/release-notes/release-notes.xml @@ -9,6 +9,7 @@ <para>This section lists the release notes for each stable version of NixOS and current unstable revision.</para> +<xi:include href="rl-1803.xml" /> <xi:include href="rl-1709.xml" /> <xi:include href="rl-1703.xml" /> <xi:include href="rl-1609.xml" /> diff --git a/nixos/doc/manual/release-notes/rl-1709.xml b/nixos/doc/manual/release-notes/rl-1709.xml index 55b39209f0d5..66f7b01db72a 100644 --- a/nixos/doc/manual/release-notes/rl-1709.xml +++ b/nixos/doc/manual/release-notes/rl-1709.xml @@ -6,13 +6,22 @@ <title>Release 17.09 (“Hummingbird”, 2017/09/??)</title> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-17.09-highlights"> + +<title>Highlights</title> + <para>In addition to numerous new and upgraded packages, this release has the following highlights: </para> <itemizedlist> <listitem> <para> - The GNOME version is now 3.24. + The GNOME version is now 3.24. KDE Plasma was upgraded to 5.10, + KDE Applications to 17.08.1 and KDE Frameworks to 5.37. </para> </listitem> <listitem> @@ -45,16 +54,130 @@ has the following highlights: </para> even though <literal>HDMI-0</literal> is the first head in the list. </para> </listitem> + <listitem> + <para> + The handling of SSL in the <literal>services.nginx</literal> module has + been cleaned up, renaming the misnamed <literal>enableSSL</literal> to + <literal>onlySSL</literal> which reflects its original intention. This + is not to be used with the already existing <literal>forceSSL</literal> + which creates a second non-SSL virtual host redirecting to the SSL + virtual host. This by chance had worked earlier due to specific + implementation details. In case you had specified both please remove + the <literal>enableSSL</literal> option to keep the previous behaviour. + </para> + <para> + Another <literal>addSSL</literal> option has been introduced to configure + both a non-SSL virtual host and an SSL virtual host with the same + configuration. + </para> + <para> + Options to configure <literal>resolver</literal> options and + <literal>upstream</literal> blocks have been introduced. See their information + for further details. + </para> + <para> + The <literal>port</literal> option has been replaced by a more generic + <literal>listen</literal> option which makes it possible to specify + multiple addresses, ports and SSL configs dependant on the new SSL + handling mentioned above. + </para> + </listitem> </itemizedlist> +</section> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-17.09-new-services"> + +<title>New Services</title> + <para>The following new services were added since the last release:</para> <itemizedlist> - <listitem> - <para></para> - </listitem> + <listitem><para><literal>config/fonts/fontconfig-penultimate.nix</literal></para></listitem> + <listitem><para><literal>config/fonts/fontconfig-ultimate.nix</literal></para></listitem> + <listitem><para><literal>config/terminfo.nix</literal></para></listitem> + <listitem><para><literal>hardware/sensor/iio.nix</literal></para></listitem> + <listitem><para><literal>hardware/nitrokey.nix</literal></para></listitem> + <listitem><para><literal>hardware/raid/hpsa.nix</literal></para></listitem> + <listitem><para><literal>programs/browserpass.nix</literal></para></listitem> + <listitem><para><literal>programs/gnupg.nix</literal></para></listitem> + <listitem><para><literal>programs/qt5ct.nix</literal></para></listitem> + <listitem><para><literal>programs/slock.nix</literal></para></listitem> + <listitem><para><literal>programs/thefuck.nix</literal></para></listitem> + <listitem><para><literal>security/auditd.nix</literal></para></listitem> + <listitem><para><literal>security/lock-kernel-modules.nix</literal></para></listitem> + <listitem><para><literal>service-managers/docker.nix</literal></para></listitem> + <listitem><para><literal>service-managers/trivial.nix</literal></para></listitem> + <listitem><para><literal>services/admin/salt/master.nix</literal></para></listitem> + <listitem><para><literal>services/admin/salt/minion.nix</literal></para></listitem> + <listitem><para><literal>services/audio/slimserver.nix</literal></para></listitem> + <listitem><para><literal>services/cluster/kubernetes/default.nix</literal></para></listitem> + <listitem><para><literal>services/cluster/kubernetes/dns.nix</literal></para></listitem> + <listitem><para><literal>services/cluster/kubernetes/dashboard.nix</literal></para></listitem> + <listitem><para><literal>services/continuous-integration/hail.nix</literal></para></listitem> + <listitem><para><literal>services/databases/clickhouse.nix</literal></para></listitem> + <listitem><para><literal>services/databases/postage.nix</literal></para></listitem> + <listitem><para><literal>services/desktops/gnome3/gnome-disks.nix</literal></para></listitem> + <listitem><para><literal>services/desktops/gnome3/gpaste.nix</literal></para></listitem> + <listitem><para><literal>services/logging/SystemdJournal2Gelf.nix</literal></para></listitem> + <listitem><para><literal>services/logging/heartbeat.nix</literal></para></listitem> + <listitem><para><literal>services/logging/journalwatch.nix</literal></para></listitem> + <listitem><para><literal>services/logging/syslogd.nix</literal></para></listitem> + <listitem><para><literal>services/mail/mailhog.nix</literal></para></listitem> + <listitem><para><literal>services/mail/nullmailer.nix</literal></para></listitem> + <listitem><para><literal>services/misc/airsonic.nix</literal></para></listitem> + <listitem><para><literal>services/misc/autorandr.nix</literal></para></listitem> + <listitem><para><literal>services/misc/exhibitor.nix</literal></para></listitem> + <listitem><para><literal>services/misc/fstrim.nix</literal></para></listitem> + <listitem><para><literal>services/misc/gollum.nix</literal></para></listitem> + <listitem><para><literal>services/misc/irkerd.nix</literal></para></listitem> + <listitem><para><literal>services/misc/jackett.nix</literal></para></listitem> + <listitem><para><literal>services/misc/radarr.nix</literal></para></listitem> + <listitem><para><literal>services/misc/snapper.nix</literal></para></listitem> + <listitem><para><literal>services/monitoring/osquery.nix</literal></para></listitem> + <listitem><para><literal>services/monitoring/prometheus/collectd-exporter.nix</literal></para></listitem> + <listitem><para><literal>services/monitoring/prometheus/fritzbox-exporter.nix</literal></para></listitem> + <listitem><para><literal>services/network-filesystems/kbfs.nix</literal></para></listitem> + <listitem><para><literal>services/networking/dnscache.nix</literal></para></listitem> + <listitem><para><literal>services/networking/fireqos.nix</literal></para></listitem> + <listitem><para><literal>services/networking/iwd.nix</literal></para></listitem> + <listitem><para><literal>services/networking/keepalived/default.nix</literal></para></listitem> + <listitem><para><literal>services/networking/keybase.nix</literal></para></listitem> + <listitem><para><literal>services/networking/lldpd.nix</literal></para></listitem> + <listitem><para><literal>services/networking/matterbridge.nix</literal></para></listitem> + <listitem><para><literal>services/networking/squid.nix</literal></para></listitem> + <listitem><para><literal>services/networking/tinydns.nix</literal></para></listitem> + <listitem><para><literal>services/networking/xrdp.nix</literal></para></listitem> + <listitem><para><literal>services/security/shibboleth-sp.nix</literal></para></listitem> + <listitem><para><literal>services/security/sks.nix</literal></para></listitem> + <listitem><para><literal>services/security/sshguard.nix</literal></para></listitem> + <listitem><para><literal>services/security/torify.nix</literal></para></listitem> + <listitem><para><literal>services/security/usbguard.nix</literal></para></listitem> + <listitem><para><literal>services/security/vault.nix</literal></para></listitem> + <listitem><para><literal>services/system/earlyoom.nix</literal></para></listitem> + <listitem><para><literal>services/system/saslauthd.nix</literal></para></listitem> + <listitem><para><literal>services/web-apps/nexus.nix</literal></para></listitem> + <listitem><para><literal>services/web-apps/pgpkeyserver-lite.nix</literal></para></listitem> + <listitem><para><literal>services/web-apps/piwik.nix</literal></para></listitem> + <listitem><para><literal>services/web-servers/lighttpd/collectd.nix</literal></para></listitem> + <listitem><para><literal>services/web-servers/minio.nix</literal></para></listitem> + <listitem><para><literal>services/x11/display-managers/xpra.nix</literal></para></listitem> + <listitem><para><literal>services/x11/xautolock.nix</literal></para></listitem> + <listitem><para><literal>tasks/filesystems/bcachefs.nix</literal></para></listitem> + <listitem><para><literal>tasks/powertop.nix</literal></para></listitem> </itemizedlist> +</section> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-17.09-incompatibilities"> + +<title>Backward Incompatibilities</title> <para>When upgrading from a previous release, please be aware of the following incompatible changes:</para> @@ -62,12 +185,99 @@ following incompatible changes:</para> <itemizedlist> <listitem> <para> - <literal>aiccu</literal> package was removed. This is due to SixXS + <emphasis role="strong"> + In an Qemu-based virtualization environment, the network interface + names changed from i.e. <literal>enp0s3</literal> to + <literal>ens3</literal>. + </emphasis> + </para> + <para> + This is due to a kernel configuration change. The new naming + is consistent with those of other Linux distributions with + systemd. See + <link xlink:href="https://github.com/NixOS/nixpkgs/issues/29197">#29197</link> + for more information. + </para> + <para> + A machine is affected if the <literal>virt-what</literal> tool + either returns <literal>qemu</literal> or + <literal>kvm</literal> <emphasis>and</emphasis> has + interface names used in any part of its NixOS configuration, + in particular if a static network configuration with + <literal>networking.interfaces</literal> is used. + </para> + <para> + Before rebooting affected machines, please ensure: + <itemizedlist> + <listitem> + <para> + Change the interface names in your NixOS configuration. + The first interface will be called <literal>ens3</literal>, + the second one <literal>ens8</literal> and starting from there + incremented by 1. + </para> + </listitem> + <listitem> + <para> + After changing the interface names, rebuild your system with + <literal>nixos-rebuild boot</literal> to activate the new + configuration after a reboot. If you switch to the new + configuration right away you might lose network connectivity! + If using <literal>nixops</literal>, deploy with + <literal>nixops deploy --force-reboot</literal>. + </para> + </listitem> + </itemizedlist> + </para> + </listitem> + <listitem> + <para> + The following changes apply if the <literal>stateVersion</literal> is changed to 17.09 or higher. + For <literal>stateVersion = "17.03"</literal> or lower the old behavior is preserved. + </para> + <itemizedlist> + <listitem> + <para> + The <literal>postgres</literal> default version was changed from 9.5 to 9.6. + </para> + </listitem> + <listitem> + <para> + The <literal>postgres</literal> superuser name has changed from <literal>root</literal> to <literal>postgres</literal> to more closely follow what other Linux distributions are doing. + </para> + </listitem> + <listitem> + <para> + The <literal>postgres</literal> default <literal>dataDir</literal> has changed from <literal>/var/db/postgres</literal> to <literal>/var/lib/postgresql/$psqlSchema</literal> where $psqlSchema is 9.6 for example. + </para> + </listitem> + <listitem> + <para> + The <literal>mysql</literal> default <literal>dataDir</literal> has changed from <literal>/var/mysql</literal> to <literal>/var/lib/mysql</literal>. + </para> + </listitem> + <listitem> + <para> + Radicale's default package has changed from 1.x to 2.x. Instructions to migrate can be found <link xlink:href="http://radicale.org/1to2/"> here </link>. It is also possible to use the newer version by setting the <literal>package</literal> to <literal>radicale2</literal>, which is done automatically when <literal>stateVersion</literal> is 17.09 or higher. The <literal>extraArgs</literal> option has been added to allow passing the data migration arguments specified in the instructions; see the <filename xlink:href="https://github.com/NixOS/nixpkgs/blob/master/nixos/tests/radicale.nix">radicale.nix</filename> NixOS test for an example migration. + </para> + </listitem> + </itemizedlist> + </listitem> + <listitem> + <para> + The <literal>aiccu</literal> package was removed. This is due to SixXS <link xlink:href="https://www.sixxs.net/main/"> sunsetting</link> its IPv6 tunnel. </para> </listitem> <listitem> <para> + The <literal>fanctl</literal> package and <literal>fan</literal> module + have been removed due to the developers not upstreaming their iproute2 + patches and lagging with compatibility to recent iproute2 versions. + </para> + </listitem> + <listitem> + <para> Top-level <literal>idea</literal> package collection was renamed. All JetBrains IDEs are now at <literal>jetbrains</literal>. </para> @@ -81,7 +291,7 @@ following incompatible changes:</para> </listitem> <listitem> <para> - The ipfs package now doesn't ignore the <literal>dataDir</literal> option anymore. If you've ever set this option to anything other than the default you'll have to either unset it (so the default gets used) or migrate the old data manually with + The <literal>ipfs</literal> service now doesn't ignore the <literal>dataDir</literal> option anymore. If you've ever set this option to anything other than the default you'll have to either unset it (so the default gets used) or migrate the old data manually with <programlisting> dataDir=<valueOfDataDir> mv /var/lib/ipfs/.ipfs/* $dataDir @@ -91,30 +301,9 @@ rmdir /var/lib/ipfs/.ipfs </listitem> <listitem> <para> - The following changes apply if the <literal>stateVersion</literal> is changed to 17.09 or higher. - For <literal>stateVersion = "17.03</literal> or lower the old behavior is preserved. - </para> - <para> - The <literal>postgres</literal> default version was changed from 9.5 to 9.6. - </para> - <para> - The <literal>postgres</literal> superuser name has changed from <literal>root</literal> to <literal>postgres</literal> to more closely follow what other Linux distributions are doing. - </para> - <para> - The <literal>postgres</literal> default <literal>dataDir</literal> has changed from <literal>/var/db/postgres</literal> to <literal>/var/lib/postgresql/$psqlSchema</literal> where $psqlSchema is 9.6 for example. - </para> - <para> - The <literal>mysql</literal> default <literal>dataDir</literal> has changed from <literal>/var/mysql</literal> to <literal>/var/lib/mysql</literal>. - </para> - <para> - Radicale's default package has changed from 1.x to 2.x. Instructions to migrate can be found <link xlink:href="http://radicale.org/1to2/"> here </link>. It is also possible to use the newer version by setting the <literal>package</literal> to <literal>radicale2</literal>, which is done automatically when <literal>stateVersion</literal> is 17.09 or higher. The <literal>extraArgs</literal> option has been added to allow passing the data migration arguments specified in the instructions; see the <filename xlink:href="https://github.com/NixOS/nixpkgs/blob/master/nixos/tests/radicale.nix">radicale.nix</filename> NixOS test for an example migration. - </para> - </listitem> - <listitem> - <para> The <literal>caddy</literal> service was previously using an extra - <literal>.caddy</literal> in the data directory specified with the - <literal>dataDir</literal> option. The contents of the + <literal>.caddy</literal> directory in the data directory specified + with the <literal>dataDir</literal> option. The contents of the <literal>.caddy</literal> directory are now expected to be in the <literal>dataDir</literal>. </para> @@ -193,18 +382,114 @@ rmdir /var/lib/ipfs/.ipfs No complete replacement for grsecurity/PaX is available presently. </para> </listitem> - <listitem> + <listitem> + <para> + <literal>services.mysql</literal> now has declarative + configuration of databases and users with the <literal>ensureDatabases</literal> and + <literal>ensureUsers</literal> options. + </para> + + <para> + These options will never delete existing databases and users, + especially not when the value of the options are changed. + </para> + + <para> + The MySQL users will be identified using + <link xlink:href="https://mariadb.com/kb/en/library/authentication-plugin-unix-socket/"> + Unix socket authentication</link>. This authenticates the + Unix user with the same name only, and that without the need + for a password. + </para> + + <para> + If you have previously created a MySQL <literal>root</literal> + user <emphasis>with a password</emphasis>, you will need to add + <literal>root</literal> user for unix socket authentication + before using the new options. This can be done by running the + following SQL script: + +<programlisting language="sql"> +CREATE USER 'root'@'%' IDENTIFIED BY ''; +GRANT ALL PRIVILEGES ON *.* TO 'root'@'%' WITH GRANT OPTION; +FLUSH PRIVILEGES; + +-- Optionally, delete the password-authenticated user: +-- DROP USER 'root'@'localhost'; +</programlisting> + </para> + </listitem> + + <listitem> + <para> + <literal>services.mysqlBackup</literal> now works by default + without any user setup, including for users other than + <literal>mysql</literal>. + </para> + + <para> + By default, the <literal>mysql</literal> user is no longer the + user which performs the backup. Instead a system account + <literal>mysqlbackup</literal> is used. + </para> + + <para> + The <literal>mysqlBackup</literal> service is also now using + systemd timers instead of <literal>cron</literal>. + </para> + + <para> + Therefore, the <literal>services.mysqlBackup.period</literal> + option no longer exists, and has been replaced with + <literal>services.mysqlBackup.calendar</literal>, which is in + the format of <link + xlink:href="https://www.freedesktop.org/software/systemd/man/systemd.time.html#Calendar%20Events">systemd.time(7)</link>. + </para> + + <para> + If you expect to be sent an e-mail when the backup fails, + consider using a script which monitors the systemd journal for + errors. Regretfully, at present there is no built-in + functionality for this. + </para> + + <para> + You can check that backups still work by running + <command>systemctl start mysql-backup</command> then + <command>systemctl status mysql-backup</command>. + </para> + </listitem> + + <listitem> <para> - The <literal>gnupg</literal> package used to suffix its programs - with <literal>2</literal>, like <command>gpg2</command> and - <command>gpgv2</command>. This suffix has since been dropped, - and the programs are now simply <command>gpg</command>, - <command>gpgv</command>, etc. + Templated systemd services e.g <literal>container@name</literal> are + now handled currectly when switching to a new configuration, resulting + in them being reloaded. + </para> + </listitem> + + <listitem> + <para>Steam: the <literal>newStdcpp</literal> parameter + was removed and should not be needed anymore.</para> + </listitem> + + <listitem> + <para> + Redis has been updated to version 4 which mandates a cluster + mass-restart, due to changes in the network handling, in order + to ensure compatibility with networks NATing traffic. </para> </listitem> </itemizedlist> -<para>Other notable improvements:</para> +</section> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-17.09-notable-changes"> + +<title>Other Notable Changes</title> <itemizedlist> @@ -249,7 +534,7 @@ rmdir /var/lib/ipfs/.ipfs Nixpkgs overlays may now be specified with a file as well as a directory. The value of <literal><nixpkgs-overlays></literal> may be a file, and <filename>~/.config/nixpkgs/overlays.nix</filename> can be used instead of the - <filename>~/.config/nixpkgs/overalys</filename> directory. + <filename>~/.config/nixpkgs/overlays</filename> directory. </para> <para> See the overlays chapter of the Nixpkgs manual for more details. @@ -257,14 +542,70 @@ rmdir /var/lib/ipfs/.ipfs </listitem> <listitem> <para> - <literal>sha256</literal> argument value of - <literal>dockerTools.pullImage</literal> expression must be - updated since the mechanism to download the image has been - changed. Skopeo is now used to pull the image instead of the - Docker daemon. + Definitions for <filename>/etc/hosts</filename> can now be specified + declaratively with <literal>networking.hosts</literal>. + </para> + </listitem> + <listitem> + <para> + Two new options have been added to the installer loader, in addition + to the default having changed. The kernel log verbosity has been lowered + to the upstream default for the default options, in order to not spam + the console when e.g. joining a network. + </para> + <para> + This therefore leads to adding a new <literal>debug</literal> option + to set the log level to the previous verbose mode, to make debugging + easier, but still accessible easily. + </para> + <para> + Additionally a <literal>copytoram</literal> option has been added, + which makes it possible to remove the install medium after booting. + This allows tethering from your phone after booting from it. + </para> + </listitem> + <listitem> + <para> + <literal>services.gitlab-runner.configOptions</literal> has been added + to specify the configuration of gitlab-runners declaratively. + </para> + </listitem> + <listitem> + <para> + <literal>services.jenkins.plugins</literal> has been added + to install plugins easily, this can be generated with jenkinsPlugins2nix. + </para> + </listitem> + <listitem> + <para> + <literal>services.postfix.config</literal> has been added + to specify the main.cf with NixOS options. Additionally other options + have been added to the postfix module and has been improved further. + </para> + </listitem> + <listitem> + <para> + The GitLab package and module have been updated to the latest 10.0 + release. + </para> + </listitem> + <listitem> + <para> + The <literal>systemd-boot</literal> boot loader now lists the NixOS + version, kernel version and build date of all bootable generations. + </para> + </listitem> + <listitem> + <para> + The dnscrypt-proxy service now defaults to using a random upstream resolver, + selected from the list of public non-logging resolvers with DNSSEC support. + Existing configurations can be migrated to this mode of operation by + omitting the <option>services.dnscrypt-proxy.resolverName</option> option + or setting it to <literal>"random"</literal>. </para> </listitem> </itemizedlist> </section> +</section> diff --git a/nixos/doc/manual/release-notes/rl-1803.xml b/nixos/doc/manual/release-notes/rl-1803.xml index ce05cde7b08b..830e7cdd2696 100644 --- a/nixos/doc/manual/release-notes/rl-1803.xml +++ b/nixos/doc/manual/release-notes/rl-1803.xml @@ -6,6 +6,14 @@ <title>Release 18.03 (“Impala”, 2018/03/??)</title> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-18.03-highlights"> + +<title>Highlights</title> + <para>In addition to numerous new and upgraded packages, this release has the following highlights: </para> @@ -16,6 +24,15 @@ has the following highlights: </para> </listitem> </itemizedlist> +</section> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-18.03-new-services"> + +<title>New Services</title> + <para>The following new services were added since the last release:</para> <itemizedlist> @@ -24,17 +41,32 @@ has the following highlights: </para> </listitem> </itemizedlist> +</section> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-18.03-incompatibilities"> + +<title>Backward Incompatibilities</title> + <para>When upgrading from a previous release, please be aware of the following incompatible changes:</para> <itemizedlist> <listitem> - <para> - </para> + <para></para> </listitem> </itemizedlist> -<para>Other notable improvements:</para> +</section> +<section xmlns="http://docbook.org/ns/docbook" + xmlns:xlink="http://www.w3.org/1999/xlink" + xmlns:xi="http://www.w3.org/2001/XInclude" + version="5.0" + xml:id="sec-release-18.03-notable-changes"> + +<title>Other Notable Changes</title> <itemizedlist> <listitem> @@ -44,3 +76,4 @@ following incompatible changes:</para> </itemizedlist> </section> +</section> diff --git a/nixos/maintainers/scripts/ec2/create-amis.sh b/nixos/maintainers/scripts/ec2/create-amis.sh index 24ced8da531a..dfc0f8d11465 100755 --- a/nixos/maintainers/scripts/ec2/create-amis.sh +++ b/nixos/maintainers/scripts/ec2/create-amis.sh @@ -17,7 +17,7 @@ mkdir -p $stateDir rm -f ec2-amis.nix types="hvm" -stores="ebs s3" +stores="ebs" regions="eu-west-1 eu-west-2 eu-central-1 us-east-1 us-east-2 us-west-1 us-west-2 ca-central-1 ap-southeast-1 ap-southeast-2 ap-northeast-1 ap-northeast-2 sa-east-1 ap-south-1" for type in $types; do diff --git a/nixos/modules/config/krb5.nix b/nixos/modules/config/krb5.nix deleted file mode 100644 index d318b7207429..000000000000 --- a/nixos/modules/config/krb5.nix +++ /dev/null @@ -1,206 +0,0 @@ -{ config, lib, pkgs, ... }: - -with lib; - -let - - cfg = config.krb5; - -in - -{ - ###### interface - - options = { - - krb5 = { - - enable = mkOption { - default = false; - description = "Whether to enable Kerberos V."; - }; - - defaultRealm = mkOption { - default = "ATENA.MIT.EDU"; - description = "Default realm."; - }; - - domainRealm = mkOption { - default = "atena.mit.edu"; - description = "Default domain realm."; - }; - - kdc = mkOption { - default = "kerberos.mit.edu"; - description = "Key Distribution Center"; - }; - - kerberosAdminServer = mkOption { - default = "kerberos.mit.edu"; - description = "Kerberos Admin Server."; - }; - - }; - - }; - - ###### implementation - - config = mkIf config.krb5.enable { - - environment.systemPackages = [ pkgs.krb5Full ]; - - environment.etc."krb5.conf".text = - '' - [libdefaults] - default_realm = ${cfg.defaultRealm} - encrypt = true - - # The following krb5.conf variables are only for MIT Kerberos. - krb4_config = /etc/krb.conf - krb4_realms = /etc/krb.realms - kdc_timesync = 1 - ccache_type = 4 - forwardable = true - proxiable = true - - # The following encryption type specification will be used by MIT Kerberos - # if uncommented. In general, the defaults in the MIT Kerberos code are - # correct and overriding these specifications only serves to disable new - # encryption types as they are added, creating interoperability problems. - - # default_tgs_enctypes = aes256-cts arcfour-hmac-md5 des3-hmac-sha1 des-cbc-crc des-cbc-md5 - # default_tkt_enctypes = aes256-cts arcfour-hmac-md5 des3-hmac-sha1 des-cbc-crc des-cbc-md5 - # permitted_enctypes = aes256-cts arcfour-hmac-md5 des3-hmac-sha1 des-cbc-crc des-cbc-md5 - - # The following libdefaults parameters are only for Heimdal Kerberos. - v4_instance_resolve = false - v4_name_convert = { - host = { - rcmd = host - ftp = ftp - } - plain = { - something = something-else - } - } - fcc-mit-ticketflags = true - - [realms] - ${cfg.defaultRealm} = { - kdc = ${cfg.kdc} - admin_server = ${cfg.kerberosAdminServer} - #kpasswd_server = ${cfg.kerberosAdminServer} - } - ATHENA.MIT.EDU = { - kdc = kerberos.mit.edu:88 - kdc = kerberos-1.mit.edu:88 - kdc = kerberos-2.mit.edu:88 - admin_server = kerberos.mit.edu - default_domain = mit.edu - } - MEDIA-LAB.MIT.EDU = { - kdc = kerberos.media.mit.edu - admin_server = kerberos.media.mit.edu - } - ZONE.MIT.EDU = { - kdc = casio.mit.edu - kdc = seiko.mit.edu - admin_server = casio.mit.edu - } - MOOF.MIT.EDU = { - kdc = three-headed-dogcow.mit.edu:88 - kdc = three-headed-dogcow-1.mit.edu:88 - admin_server = three-headed-dogcow.mit.edu - } - CSAIL.MIT.EDU = { - kdc = kerberos-1.csail.mit.edu - kdc = kerberos-2.csail.mit.edu - admin_server = kerberos.csail.mit.edu - default_domain = csail.mit.edu - krb524_server = krb524.csail.mit.edu - } - IHTFP.ORG = { - kdc = kerberos.ihtfp.org - admin_server = kerberos.ihtfp.org - } - GNU.ORG = { - kdc = kerberos.gnu.org - kdc = kerberos-2.gnu.org - kdc = kerberos-3.gnu.org - admin_server = kerberos.gnu.org - } - 1TS.ORG = { - kdc = kerberos.1ts.org - admin_server = kerberos.1ts.org - } - GRATUITOUS.ORG = { - kdc = kerberos.gratuitous.org - admin_server = kerberos.gratuitous.org - } - DOOMCOM.ORG = { - kdc = kerberos.doomcom.org - admin_server = kerberos.doomcom.org - } - ANDREW.CMU.EDU = { - kdc = vice28.fs.andrew.cmu.edu - kdc = vice2.fs.andrew.cmu.edu - kdc = vice11.fs.andrew.cmu.edu - kdc = vice12.fs.andrew.cmu.edu - admin_server = vice28.fs.andrew.cmu.edu - default_domain = andrew.cmu.edu - } - CS.CMU.EDU = { - kdc = kerberos.cs.cmu.edu - kdc = kerberos-2.srv.cs.cmu.edu - admin_server = kerberos.cs.cmu.edu - } - DEMENTIA.ORG = { - kdc = kerberos.dementia.org - kdc = kerberos2.dementia.org - admin_server = kerberos.dementia.org - } - stanford.edu = { - kdc = krb5auth1.stanford.edu - kdc = krb5auth2.stanford.edu - kdc = krb5auth3.stanford.edu - admin_server = krb5-admin.stanford.edu - default_domain = stanford.edu - } - - [domain_realm] - .${cfg.domainRealm} = ${cfg.defaultRealm} - ${cfg.domainRealm} = ${cfg.defaultRealm} - .mit.edu = ATHENA.MIT.EDU - mit.edu = ATHENA.MIT.EDU - .exchange.mit.edu = EXCHANGE.MIT.EDU - exchange.mit.edu = EXCHANGE.MIT.EDU - .media.mit.edu = MEDIA-LAB.MIT.EDU - media.mit.edu = MEDIA-LAB.MIT.EDU - .csail.mit.edu = CSAIL.MIT.EDU - csail.mit.edu = CSAIL.MIT.EDU - .whoi.edu = ATHENA.MIT.EDU - whoi.edu = ATHENA.MIT.EDU - .stanford.edu = stanford.edu - - [logging] - kdc = SYSLOG:INFO:DAEMON - admin_server = SYSLOG:INFO:DAEMON - default = SYSLOG:INFO:DAEMON - krb4_convert = true - krb4_get_tickets = false - - [appdefaults] - pam = { - debug = false - ticket_lifetime = 36000 - renew_lifetime = 36000 - max_timeout = 30 - timeout_shift = 2 - initial_timeout = 1 - } - ''; - - }; - -} diff --git a/nixos/modules/config/krb5/default.nix b/nixos/modules/config/krb5/default.nix new file mode 100644 index 000000000000..c22e99a0a2f1 --- /dev/null +++ b/nixos/modules/config/krb5/default.nix @@ -0,0 +1,367 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + + cfg = config.krb5; + + # This is to provide support for old configuration options (as much as is + # reasonable). This can be removed after 18.03 was released. + defaultConfig = { + libdefaults = optionalAttrs (cfg.defaultRealm != null) + { default_realm = cfg.defaultRealm; }; + + realms = optionalAttrs (lib.all (value: value != null) [ + cfg.defaultRealm cfg.kdc cfg.kerberosAdminServer + ]) { + "${cfg.defaultRealm}" = { + kdc = cfg.kdc; + admin_server = cfg.kerberosAdminServer; + }; + }; + + domain_realm = optionalAttrs (lib.all (value: value != null) [ + cfg.domainRealm cfg.defaultRealm + ]) { + ".${cfg.domainRealm}" = cfg.defaultRealm; + "${cfg.domainRealm}" = cfg.defaultRealm; + }; + }; + + mergedConfig = (recursiveUpdate defaultConfig { + inherit (config.krb5) + kerberos libdefaults realms domain_realm capaths appdefaults plugins + extraConfig config; + }); + + filterEmbeddedMetadata = value: if isAttrs value then + (filterAttrs + (attrName: attrValue: attrName != "_module" && attrValue != null) + value) + else value; + + mkIndent = depth: concatStrings (builtins.genList (_: " ") (2 * depth)); + + mkRelation = name: value: "${name} = ${mkVal { inherit value; }}"; + + mkVal = { value, depth ? 0 }: + if (value == true) then "true" + else if (value == false) then "false" + else if (isInt value) then (toString value) + else if (isList value) then + concatMapStringsSep " " mkVal { inherit value depth; } + else if (isAttrs value) then + (concatStringsSep "\n${mkIndent (depth + 1)}" + ([ "{" ] ++ (mapAttrsToList + (attrName: attrValue: let + mappedAttrValue = mkVal { + value = attrValue; + depth = depth + 1; + }; + in "${attrName} = ${mappedAttrValue}") + value))) + "\n${mkIndent depth}}" + else value; + + mkMappedAttrsOrString = value: concatMapStringsSep "\n" + (line: if builtins.stringLength line > 0 + then "${mkIndent 1}${line}" + else line) + (splitString "\n" + (if isAttrs value then + concatStringsSep "\n" + (mapAttrsToList mkRelation value) + else value)); + +in { + + ###### interface + + options = { + krb5 = { + enable = mkEnableOption "Whether to enable Kerberos V."; + + kerberos = mkOption { + type = types.package; + default = pkgs.krb5Full; + defaultText = "pkgs.krb5Full"; + example = literalExample "pkgs.heimdalFull"; + description = '' + The Kerberos implementation that will be present in + <literal>environment.systemPackages</literal> after enabling this + service. + ''; + }; + + libdefaults = mkOption { + type = with types; either attrs lines; + default = {}; + apply = attrs: filterEmbeddedMetadata attrs; + example = literalExample '' + { + default_realm = "ATHENA.MIT.EDU"; + }; + ''; + description = '' + Settings used by the Kerberos V5 library. + ''; + }; + + realms = mkOption { + type = with types; either attrs lines; + default = {}; + example = literalExample '' + { + "ATHENA.MIT.EDU" = { + admin_server = "athena.mit.edu"; + kdc = "athena.mit.edu"; + }; + }; + ''; + apply = attrs: filterEmbeddedMetadata attrs; + description = "Realm-specific contact information and settings."; + }; + + domain_realm = mkOption { + type = with types; either attrs lines; + default = {}; + example = literalExample '' + { + "example.com" = "EXAMPLE.COM"; + ".example.com" = "EXAMPLE.COM"; + }; + ''; + apply = attrs: filterEmbeddedMetadata attrs; + description = '' + Map of server hostnames to Kerberos realms. + ''; + }; + + capaths = mkOption { + type = with types; either attrs lines; + default = {}; + example = literalExample '' + { + "ATHENA.MIT.EDU" = { + "EXAMPLE.COM" = "."; + }; + "EXAMPLE.COM" = { + "ATHENA.MIT.EDU" = "."; + }; + }; + ''; + apply = attrs: filterEmbeddedMetadata attrs; + description = '' + Authentication paths for non-hierarchical cross-realm authentication. + ''; + }; + + appdefaults = mkOption { + type = with types; either attrs lines; + default = {}; + example = literalExample '' + { + pam = { + debug = false; + ticket_lifetime = 36000; + renew_lifetime = 36000; + max_timeout = 30; + timeout_shift = 2; + initial_timeout = 1; + }; + }; + ''; + apply = attrs: filterEmbeddedMetadata attrs; + description = '' + Settings used by some Kerberos V5 applications. + ''; + }; + + plugins = mkOption { + type = with types; either attrs lines; + default = {}; + example = literalExample '' + { + ccselect = { + disable = "k5identity"; + }; + }; + ''; + apply = attrs: filterEmbeddedMetadata attrs; + description = '' + Controls plugin module registration. + ''; + }; + + extraConfig = mkOption { + type = with types; nullOr lines; + default = null; + example = '' + [logging] + kdc = SYSLOG:NOTICE + admin_server = SYSLOG:NOTICE + default = SYSLOG:NOTICE + ''; + description = '' + These lines go to the end of <literal>krb5.conf</literal> verbatim. + <literal>krb5.conf</literal> may include any of the relations that are + valid for <literal>kdc.conf</literal> (see <literal>man + kdc.conf</literal>), but it is not a recommended practice. + ''; + }; + + config = mkOption { + type = with types; nullOr lines; + default = null; + example = '' + [libdefaults] + default_realm = EXAMPLE.COM + + [realms] + EXAMPLE.COM = { + admin_server = kerberos.example.com + kdc = kerberos.example.com + default_principal_flags = +preauth + } + + [domain_realm] + example.com = EXAMPLE.COM + .example.com = EXAMPLE.COM + + [logging] + kdc = SYSLOG:NOTICE + admin_server = SYSLOG:NOTICE + default = SYSLOG:NOTICE + ''; + description = '' + Verbatim <literal>krb5.conf</literal> configuration. Note that this + is mutually exclusive with configuration via + <literal>libdefaults</literal>, <literal>realms</literal>, + <literal>domain_realm</literal>, <literal>capaths</literal>, + <literal>appdefaults</literal>, <literal>plugins</literal> and + <literal>extraConfig</literal> configuration options. Consult + <literal>man krb5.conf</literal> for documentation. + ''; + }; + + defaultRealm = mkOption { + type = with types; nullOr str; + default = null; + example = "ATHENA.MIT.EDU"; + description = '' + DEPRECATED, please use + <literal>krb5.libdefaults.default_realm</literal>. + ''; + }; + + domainRealm = mkOption { + type = with types; nullOr str; + default = null; + example = "athena.mit.edu"; + description = '' + DEPRECATED, please create a map of server hostnames to Kerberos realms + in <literal>krb5.domain_realm</literal>. + ''; + }; + + kdc = mkOption { + type = with types; nullOr str; + default = null; + example = "kerberos.mit.edu"; + description = '' + DEPRECATED, please pass a <literal>kdc</literal> attribute to a realm + in <literal>krb5.realms</literal>. + ''; + }; + + kerberosAdminServer = mkOption { + type = with types; nullOr str; + default = null; + example = "kerberos.mit.edu"; + description = '' + DEPRECATED, please pass an <literal>admin_server</literal> attribute + to a realm in <literal>krb5.realms</literal>. + ''; + }; + }; + }; + + ###### implementation + + config = mkIf cfg.enable { + + environment.systemPackages = [ cfg.kerberos ]; + + environment.etc."krb5.conf".text = if isString cfg.config + then cfg.config + else ('' + [libdefaults] + ${mkMappedAttrsOrString mergedConfig.libdefaults} + + [realms] + ${mkMappedAttrsOrString mergedConfig.realms} + + [domain_realm] + ${mkMappedAttrsOrString mergedConfig.domain_realm} + + [capaths] + ${mkMappedAttrsOrString mergedConfig.capaths} + + [appdefaults] + ${mkMappedAttrsOrString mergedConfig.appdefaults} + + [plugins] + ${mkMappedAttrsOrString mergedConfig.plugins} + '' + optionalString (mergedConfig.extraConfig != null) + ("\n" + mergedConfig.extraConfig)); + + warnings = flatten [ + (optional (cfg.defaultRealm != null) '' + The option krb5.defaultRealm is deprecated, please use + krb5.libdefaults.default_realm. + '') + (optional (cfg.domainRealm != null) '' + The option krb5.domainRealm is deprecated, please use krb5.domain_realm. + '') + (optional (cfg.kdc != null) '' + The option krb5.kdc is deprecated, please pass a kdc attribute to a + realm in krb5.realms. + '') + (optional (cfg.kerberosAdminServer != null) '' + The option krb5.kerberosAdminServer is deprecated, please pass an + admin_server attribute to a realm in krb5.realms. + '') + ]; + + assertions = [ + { assertion = !((builtins.any (value: value != null) [ + cfg.defaultRealm cfg.domainRealm cfg.kdc cfg.kerberosAdminServer + ]) && ((builtins.any (value: value != {}) [ + cfg.libdefaults cfg.realms cfg.domain_realm cfg.capaths + cfg.appdefaults cfg.plugins + ]) || (builtins.any (value: value != null) [ + cfg.config cfg.extraConfig + ]))); + message = '' + Configuration of krb5.conf by deprecated options is mutually exclusive + with configuration by section. Please migrate your config using the + attributes suggested in the warnings. + ''; + } + { assertion = !(cfg.config != null + && ((builtins.any (value: value != {}) [ + cfg.libdefaults cfg.realms cfg.domain_realm cfg.capaths + cfg.appdefaults cfg.plugins + ]) || (builtins.any (value: value != null) [ + cfg.extraConfig cfg.defaultRealm cfg.domainRealm cfg.kdc + cfg.kerberosAdminServer + ]))); + message = '' + Configuration of krb5.conf using krb.config is mutually exclusive with + configuration by section. If you want to mix the two, you can pass + lines to any configuration section or lines to krb5.extraConfig. + ''; + } + ]; + }; +} diff --git a/nixos/modules/hardware/video/nvidia.nix b/nixos/modules/hardware/video/nvidia.nix index 80abec95c03d..50c085dd7ee2 100644 --- a/nixos/modules/hardware/video/nvidia.nix +++ b/nixos/modules/hardware/video/nvidia.nix @@ -40,6 +40,12 @@ in { config = mkIf enabled { + assertions = [ + { + assertion = config.services.xserver.displayManager.gdm.wayland; + message = "NVidia drivers don't support wayland"; + } + ]; services.xserver.drivers = singleton { name = "nvidia"; modules = [ nvidia_x11.bin ]; libPath = [ nvidia_x11 ]; }; @@ -62,11 +68,16 @@ in boot.extraModulePackages = [ nvidia_x11.bin ]; # nvidia-uvm is required by CUDA applications. - boot.kernelModules = [ "nvidia-uvm" ]; + boot.kernelModules = [ "nvidia-uvm" ] ++ + lib.optionals config.services.xserver.enable [ "nvidia" "nvidia_modeset" "nvidia_drm" ]; + # Create /dev/nvidia-uvm when the nvidia-uvm module is loaded. services.udev.extraRules = '' + KERNEL=="nvidia", RUN+="${pkgs.stdenv.shell} -c 'mknod -m 666 /dev/nvidiactl c $(grep nvidia-frontend /proc/devices | cut -d \ -f 1) 255'" + KERNEL=="nvidia_modeset", RUN+="${pkgs.stdenv.shell} -c 'mknod -m 666 /dev/nvidia-modeset c $(grep nvidia-frontend /proc/devices | cut -d \ -f 1) 254'" + KERNEL=="card*", SUBSYSTEM=="drm", DRIVERS=="nvidia", RUN+="${pkgs.stdenv.shell} -c 'mknod -m 666 /dev/nvidia%n c $(grep nvidia-frontend /proc/devices | cut -d \ -f 1) %n'" KERNEL=="nvidia_uvm", RUN+="${pkgs.stdenv.shell} -c 'mknod -m 666 /dev/nvidia-uvm c $(grep nvidia-uvm /proc/devices | cut -d \ -f 1) 0'" ''; diff --git a/nixos/modules/installer/cd-dvd/iso-image.nix b/nixos/modules/installer/cd-dvd/iso-image.nix index 96f7aac1d59d..a039f7fdcb6e 100644 --- a/nixos/modules/installer/cd-dvd/iso-image.nix +++ b/nixos/modules/installer/cd-dvd/iso-image.nix @@ -361,6 +361,9 @@ in { source = config.isoImage.splashImage; target = "/isolinux/background.png"; } + { source = pkgs.writeText "version" config.system.nixosVersion; + target = "/version.txt"; + } ] ++ optionals config.isoImage.makeEfiBootable [ { source = efiImg; target = "/boot/efi.img"; diff --git a/nixos/modules/installer/tools/nixos-install.sh b/nixos/modules/installer/tools/nixos-install.sh index 79ed18c923c0..f994d5b4bde1 100644 --- a/nixos/modules/installer/tools/nixos-install.sh +++ b/nixos/modules/installer/tools/nixos-install.sh @@ -102,7 +102,7 @@ fi extraBuildFlags+=(--option "build-users-group" "$buildUsersGroup") # Inherit binary caches from the host -# TODO: will this still work with Nix 1.12 now that it has no perl? Probably not... +# TODO: will this still work with Nix 1.12 now that it has no perl? Probably not... binary_caches="$(@perl@/bin/perl -I @nix@/lib/perl5/site_perl/*/* -e 'use Nix::Config; Nix::Config::readConfig; print $Nix::Config::config{"binary-caches"};')" extraBuildFlags+=(--option "binary-caches" "$binary_caches") @@ -113,8 +113,33 @@ if [[ -z "$closure" ]]; then fi unset NIXOS_CONFIG -# TODO: do I need to set NIX_SUBSTITUTERS here or is the --option binary-caches above enough? - +# These get created in nixos-prepare-root as well, but we want to make sure they're here in case we're +# running with --chroot. TODO: --chroot should just be split into a separate tool. +mkdir -m 0755 -p "$mountPoint/dev" "$mountPoint/proc" "$mountPoint/sys" + +# Set up some bind mounts we'll want regardless of chroot or not +mount --rbind /dev "$mountPoint/dev" +mount --rbind /proc "$mountPoint/proc" +mount --rbind /sys "$mountPoint/sys" + +# If we asked for a chroot, that means we're not actually installing anything (yeah I was confused too) +# and we just want to run a command in the context of a $mountPoint that we're assuming has already been +# set up by a previous nixos-install invocation. In that case we set up some remaining bind mounts and +# exec the requested command, skipping the rest of the installation procedure. +if [ -n "$runChroot" ]; then + mount -t tmpfs -o "mode=0755" none $mountPoint/run + rm -rf $mountPoint/var/run + ln -s /run $mountPoint/var/run + for f in /etc/resolv.conf /etc/hosts; do rm -f $mountPoint/$f; [ -f "$f" ] && cp -Lf $f $mountPoint/etc/; done + for f in /etc/passwd /etc/group; do touch $mountPoint/$f; [ -f "$f" ] && mount --rbind -o ro $f $mountPoint/$f; done + + if ! [ -L $mountPoint/nix/var/nix/profiles/system ]; then + echo "$0: installation not finished; cannot chroot into installation directory" + exit 1 + fi + ln -s /nix/var/nix/profiles/system $mountPoint/run/current-system + exec chroot $mountPoint "${chrootCommand[@]}" +fi # A place to drop temporary closures trap "rm -rf $tmpdir" EXIT @@ -153,9 +178,7 @@ nix-store --export $channel_root > $channel_closure # nixos-prepare-root doesn't currently do anything with file ownership, so we set it up here instead chown @root_uid@:@nixbld_gid@ $mountPoint/nix/store -mount --rbind /dev $mountPoint/dev -mount --rbind /proc $mountPoint/proc -mount --rbind /sys $mountPoint/sys + # Grub needs an mtab. ln -sfn /proc/mounts $mountPoint/etc/mtab diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index b3477fba8ae1..8ac7e5b52d69 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -9,7 +9,7 @@ ./config/fonts/ghostscript.nix ./config/gnu.nix ./config/i18n.nix - ./config/krb5.nix + ./config/krb5/default.nix ./config/ldap.nix ./config/networking.nix ./config/no-x-libs.nix @@ -73,6 +73,7 @@ ./programs/adb.nix ./programs/atop.nix ./programs/bash/bash.nix + ./programs/bcc.nix ./programs/blcr.nix ./programs/browserpass.nix ./programs/cdemu.nix @@ -102,6 +103,7 @@ ./programs/spacefm.nix ./programs/ssh.nix ./programs/ssmtp.nix + ./programs/sysdig.nix ./programs/thefuck.nix ./programs/tmux.nix ./programs/venus.nix @@ -267,6 +269,7 @@ ./services/mail/offlineimap.nix ./services/mail/opendkim.nix ./services/mail/opensmtpd.nix + ./services/mail/pfix-srsd.nix ./services/mail/postfix.nix ./services/mail/postsrsd.nix ./services/mail/postgrey.nix @@ -619,6 +622,7 @@ ./services/web-servers/phpfpm/default.nix ./services/web-servers/shellinabox.nix ./services/web-servers/tomcat.nix + ./services/web-servers/traefik.nix ./services/web-servers/uwsgi.nix ./services/web-servers/varnish/default.nix ./services/web-servers/winstone.nix diff --git a/nixos/modules/programs/bcc.nix b/nixos/modules/programs/bcc.nix new file mode 100644 index 000000000000..3522ab22fa8e --- /dev/null +++ b/nixos/modules/programs/bcc.nix @@ -0,0 +1,9 @@ +{ config, lib, pkgs, ... }: +{ + options.programs.bcc.enable = lib.mkEnableOption "bcc"; + + config = lib.mkIf config.programs.bcc.enable { + environment.systemPackages = [ config.boot.kernelPackages.bcc ]; + boot.extraModulePackages = [ config.boot.kernelPackages.bcc ]; + }; +} diff --git a/nixos/modules/programs/sysdig.nix b/nixos/modules/programs/sysdig.nix new file mode 100644 index 000000000000..fbbf29065564 --- /dev/null +++ b/nixos/modules/programs/sysdig.nix @@ -0,0 +1,14 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.programs.sysdig; +in { + options.programs.sysdig.enable = mkEnableOption "sysdig"; + + config = mkIf cfg.enable { + environment.systemPackages = [ pkgs.sysdig ]; + boot.extraModulePackages = [ config.boot.kernelPackages.sysdig ]; + }; +} diff --git a/nixos/modules/security/pam_usb.nix b/nixos/modules/security/pam_usb.nix index 6f811dab8d76..9bc73bf0b85c 100644 --- a/nixos/modules/security/pam_usb.nix +++ b/nixos/modules/security/pam_usb.nix @@ -22,7 +22,7 @@ in description = '' Enable USB login for all login systems that support it. For more information, visit <link - xlink:href="http://pamusb.org/doc/quickstart#setting_up" />. + xlink:href="https://github.com/aluzzardi/pam_usb/wiki/Getting-Started#setting-up-devices-and-users" />. ''; }; diff --git a/nixos/modules/services/backup/mysql-backup.nix b/nixos/modules/services/backup/mysql-backup.nix index 28f607861f77..3f533fa457dc 100644 --- a/nixos/modules/services/backup/mysql-backup.nix +++ b/nixos/modules/services/backup/mysql-backup.nix @@ -6,10 +6,28 @@ let inherit (pkgs) mysql gzip; - cfg = config.services.mysqlBackup ; - location = cfg.location ; - mysqlBackupCron = db : '' - ${cfg.period} ${cfg.user} ${mysql}/bin/mysqldump ${if cfg.singleTransaction then "--single-transaction" else ""} ${db} | ${gzip}/bin/gzip -c > ${location}/${db}.gz + cfg = config.services.mysqlBackup; + defaultUser = "mysqlbackup"; + + backupScript = '' + set -o pipefail + failed="" + ${concatMapStringsSep "\n" backupDatabaseScript cfg.databases} + if [ -n "$failed" ]; then + echo "Backup of database(s) failed:$failed" + exit 1 + fi + ''; + backupDatabaseScript = db: '' + dest="${cfg.location}/${db}.gz" + if ${mysql}/bin/mysqldump ${if cfg.singleTransaction then "--single-transaction" else ""} ${db} | ${gzip}/bin/gzip -c > $dest.tmp; then + mv $dest.tmp $dest + echo "Backed up to $dest" + else + echo "Failed to back up to $dest" + rm -f $dest.tmp + failed="$failed ${db}" + fi ''; in @@ -26,17 +44,16 @@ in ''; }; - period = mkOption { - default = "15 01 * * *"; + calendar = mkOption { + type = types.str; + default = "01:15:00"; description = '' - This option defines (in the format used by cron) when the - databases should be dumped. - The default is to update at 01:15 (at night) every day. + Configured when to run the backup service systemd unit (DayOfWeek Year-Month-Day Hour:Minute:Second). ''; }; user = mkOption { - default = "mysql"; + default = defaultUser; description = '' User to be used to perform backup. ''; @@ -66,16 +83,49 @@ in }; - config = mkIf config.services.mysqlBackup.enable { - - services.cron.systemCronJobs = map mysqlBackupCron config.services.mysqlBackup.databases; - - system.activationScripts.mysqlBackup = stringAfter [ "stdio" "users" ] - '' - mkdir -m 0700 -p ${config.services.mysqlBackup.location} - chown ${config.services.mysqlBackup.user} ${config.services.mysqlBackup.location} - ''; - + config = mkIf cfg.enable { + users.extraUsers = optionalAttrs (cfg.user == defaultUser) (singleton + { name = defaultUser; + isSystemUser = true; + createHome = false; + home = cfg.location; + group = "nogroup"; + }); + + services.mysql.ensureUsers = [{ + name = cfg.user; + ensurePermissions = with lib; + let + privs = "SELECT, SHOW VIEW, TRIGGER, LOCK TABLES"; + grant = db: nameValuePair "${db}.*" privs; + in + listToAttrs (map grant cfg.databases); + }]; + + systemd = { + timers."mysql-backup" = { + description = "Mysql backup timer"; + wantedBy = [ "timers.target" ]; + timerConfig = { + OnCalendar = cfg.calendar; + AccuracySec = "5m"; + Unit = "mysql-backup.service"; + }; + }; + services."mysql-backup" = { + description = "Mysql backup service"; + enable = true; + serviceConfig = { + User = cfg.user; + PermissionsStartOnly = true; + }; + preStart = '' + mkdir -m 0700 -p ${cfg.location} + chown -R ${cfg.user} ${cfg.location} + ''; + script = backupScript; + }; + }; }; } diff --git a/nixos/modules/services/cluster/kubernetes/dashboard.nix b/nixos/modules/services/cluster/kubernetes/dashboard.nix index 482cbd939cb7..75d71fccfda4 100644 --- a/nixos/modules/services/cluster/kubernetes/dashboard.nix +++ b/nixos/modules/services/cluster/kubernetes/dashboard.nix @@ -11,7 +11,7 @@ let image = pkgs.dockerTools.pullImage { imageName = name; imageTag = version; - sha256 = "0b5v7xa3s91yi9yfsw2b8wijiprnicbb02f5kqa579h4yndb3gfz"; + sha256 = "1sf54d96nkgic9hir9c6p14gw24ns1k5d5a0r1sg414kjrvic0b4"; }; in { options.services.kubernetes.addons.dashboard = { diff --git a/nixos/modules/services/cluster/kubernetes/dns.nix b/nixos/modules/services/cluster/kubernetes/dns.nix index d70663fa5d7b..226fdadffd1a 100644 --- a/nixos/modules/services/cluster/kubernetes/dns.nix +++ b/nixos/modules/services/cluster/kubernetes/dns.nix @@ -8,19 +8,19 @@ let k8s-dns-kube-dns = pkgs.dockerTools.pullImage { imageName = "gcr.io/google_containers/k8s-dns-kube-dns-amd64"; imageTag = version; - sha256 = "0g64jc2076ng28xl4w3w9svf7hc6s9h8rq9mhvvwpfy2p6lgj6gy"; + sha256 = "0q97xfqrigrfjl2a9cxl5in619py0zv44gch09jm8gqjkxl80imp"; }; k8s-dns-dnsmasq-nanny = pkgs.dockerTools.pullImage { imageName = "gcr.io/google_containers/k8s-dns-dnsmasq-nanny-amd64"; imageTag = version; - sha256 = "0sdpsbj1vismihy7ass1cn96nwmav6sf3r5h6i4k2dxha0y0jsh5"; + sha256 = "051w5ca4qb88mwva4hbnh9xzlsvv7k1mbk3wz50lmig2mqrqqx6c"; }; k8s-dns-sidecar = pkgs.dockerTools.pullImage { imageName = "gcr.io/google_containers/k8s-dns-sidecar-amd64"; imageTag = version; - sha256 = "01zpi189hpy2z62awl38fap908s8rrhc3v5gb6m90y2pycl4ad6q"; + sha256 = "1z0d129bcm8i2cqq36x5jhnrv9hirj8c6kjrmdav8vgf7py78vsm"; }; cfg = config.services.kubernetes.addons.dns; diff --git a/nixos/modules/services/desktops/gnome3/at-spi2-core.nix b/nixos/modules/services/desktops/gnome3/at-spi2-core.nix index 6e4c59f4bb37..55ed2d9ee21b 100644 --- a/nixos/modules/services/desktops/gnome3/at-spi2-core.nix +++ b/nixos/modules/services/desktops/gnome3/at-spi2-core.nix @@ -34,6 +34,8 @@ with lib; services.dbus.packages = [ pkgs.at_spi2_core ]; + systemd.packages = [ pkgs.at_spi2_core ]; + }; } diff --git a/nixos/modules/services/mail/nullmailer.nix b/nixos/modules/services/mail/nullmailer.nix index b2c738ab6ebd..59cb512c115b 100644 --- a/nixos/modules/services/mail/nullmailer.nix +++ b/nixos/modules/services/mail/nullmailer.nix @@ -35,6 +35,18 @@ with lib; description = "Whether to set the system sendmail to nullmailer's."; }; + remotesFile = mkOption { + type = types.nullOr types.str; + default = null; + description = '' + Path to the <code>remotes</code> control file. This file contains a + list of remote servers to which to send each message. + + See <code>man 8 nullmailer-send</code> for syntax and available + options. + ''; + }; + config = { adminaddr = mkOption { type = types.nullOr types.str; @@ -142,7 +154,16 @@ with lib; type = types.nullOr types.str; default = null; description = '' - If set, content will override the envelope sender on all messages. + A list of remote servers to which to send each message. Each line + contains a remote host name or address followed by an optional + protocol string, separated by white space. + + See <code>man 8 nullmailer-send</code> for syntax and available + options. + + WARNING: This is stored world-readable in the nix store. If you need + to specify any secret credentials here, consider using the + <code>remotesFile</code> option instead. ''; }; @@ -164,13 +185,19 @@ with lib; cfg = config.services.nullmailer; in mkIf cfg.enable { + assertions = [ + { assertion = cfg.config.remotes == null || cfg.remotesFile == null; + message = "Only one of `remotesFile` or `config.remotes` may be used at a time."; + } + ]; + environment = { systemPackages = [ pkgs.nullmailer ]; etc = let - getval = attr: builtins.getAttr attr cfg.config; - attrs = builtins.attrNames cfg.config; - attrs' = builtins.filter (attr: ! isNull (getval attr)) attrs; - in foldl' (as: attr: as // { "nullmailer/${attr}".text = getval attr; }) {} attrs'; + validAttrs = filterAttrs (name: value: value != null) cfg.config; + in + (foldl' (as: name: as // { "nullmailer/${name}".text = validAttrs.${name}; }) {} (attrNames validAttrs)) + // optionalAttrs (cfg.remotesFile != null) { "nullmailer/remotes".source = cfg.remotesFile; }; }; users = { @@ -192,7 +219,7 @@ with lib; preStart = '' mkdir -p /var/spool/nullmailer/{queue,tmp} - rm -f var/spool/nullmailer/trigger && mkfifo -m 660 /var/spool/nullmailer/trigger + rm -f /var/spool/nullmailer/trigger && mkfifo -m 660 /var/spool/nullmailer/trigger chown ${cfg.user} /var/spool/nullmailer/* ''; diff --git a/nixos/modules/services/mail/pfix-srsd.nix b/nixos/modules/services/mail/pfix-srsd.nix new file mode 100644 index 000000000000..ab5f4c39e8c2 --- /dev/null +++ b/nixos/modules/services/mail/pfix-srsd.nix @@ -0,0 +1,56 @@ +{ config, lib, pkgs, ... }: + +with lib; + +{ + + ###### interface + + options = { + + services.pfix-srsd = { + enable = mkOption { + default = false; + type = types.bool; + description = "Whether to run the postfix sender rewriting scheme daemon."; + }; + + domain = mkOption { + description = "The domain for which to enable srs"; + type = types.str; + example = "example.com"; + }; + + secretsFile = mkOption { + description = '' + The secret data used to encode the SRS address. + to generate, use a command like: + <literal>for n in $(seq 5); do dd if=/dev/urandom count=1 bs=1024 status=none | sha256sum | sed 's/ -$//' | sed 's/^/ /'; done</literal> + ''; + type = types.path; + default = "/var/lib/pfix-srsd/secrets"; + }; + }; + }; + + ###### implementation + + config = mkIf config.services.pfix-srsd.enable { + environment = { + systemPackages = [ pkgs.pfixtools ]; + }; + + systemd.services."pfix-srsd" = { + description = "Postfix sender rewriting scheme daemon"; + before = [ "postfix.service" ]; + #note that we use requires rather than wants because postfix + #is unable to process (almost) all mail without srsd + requiredBy = [ "postfix.service" ]; + serviceConfig = { + Type = "forking"; + PIDFile = "/var/run/pfix-srsd.pid"; + ExecStart = "${pkgs.pfixtools}/bin/pfix-srsd -p /var/run/pfix-srsd.pid -I ${config.services.pfix-srsd.domain} ${config.services.pfix-srsd.secretsFile}"; + }; + }; + }; +} \ No newline at end of file diff --git a/nixos/modules/services/mail/postfix.nix b/nixos/modules/services/mail/postfix.nix index d88a38def82c..ad4e58149847 100644 --- a/nixos/modules/services/mail/postfix.nix +++ b/nixos/modules/services/mail/postfix.nix @@ -79,6 +79,12 @@ let // optionalAttrs haveTransport { transport_maps = "hash:/etc/postfix/transport"; } // optionalAttrs haveVirtual { virtual_alias_maps = "${cfg.virtualMapType}:/etc/postfix/virtual"; } // optionalAttrs (cfg.dnsBlacklists != []) { smtpd_client_restrictions = clientRestrictions; } + // optionalAttrs cfg.useSrs { + sender_canonical_maps = "tcp:127.0.0.1:10001"; + sender_canonical_classes = "envelope_sender"; + recipient_canonical_maps = "tcp:127.0.0.1:10002"; + recipient_canonical_classes= "envelope_recipient"; + } // optionalAttrs cfg.enableHeaderChecks { header_checks = "regexp:/etc/postfix/header_checks"; } // optionalAttrs (cfg.sslCert != "") { smtp_tls_CAfile = cfg.sslCACert; @@ -626,6 +632,12 @@ in description = "Maps to be compiled and placed into /var/lib/postfix/conf."; }; + useSrs = mkOption { + type = types.bool; + default = false; + description = "Whether to enable sender rewriting scheme"; + }; + }; }; @@ -646,6 +658,8 @@ in systemPackages = [ pkgs.postfix ]; }; + services.pfix-srsd.enable = config.services.postfix.useSrs; + services.mail.sendmailSetuidWrapper = mkIf config.services.postfix.setSendmail { program = "sendmail"; source = "${pkgs.postfix}/bin/sendmail"; diff --git a/nixos/modules/services/mail/spamassassin.nix b/nixos/modules/services/mail/spamassassin.nix index fc8396cd85e9..d483a8c3d67d 100644 --- a/nixos/modules/services/mail/spamassassin.nix +++ b/nixos/modules/services/mail/spamassassin.nix @@ -42,7 +42,7 @@ in Then you can Use this sieve filter: require ["fileinto", "reject", "envelope"]; - + if header :contains "X-Spam-Flag" "YES" { fileinto "spam"; } @@ -67,11 +67,11 @@ in initPreConf = mkOption { type = types.str; description = "The SpamAssassin init.pre config."; - default = - '' + default = + '' # # to update this list, run this command in the rules directory: - # grep 'loadplugin.*Mail::SpamAssassin::Plugin::.*' -o -h * | sort | uniq + # grep 'loadplugin.*Mail::SpamAssassin::Plugin::.*' -o -h * | sort | uniq # #loadplugin Mail::SpamAssassin::Plugin::AccessDB @@ -122,7 +122,11 @@ in config = mkIf cfg.enable { # Allow users to run 'spamc'. - environment.systemPackages = [ pkgs.spamassassin ]; + + environment = { + etc = singleton { source = spamdEnv; target = "spamassassin"; }; + systemPackages = [ pkgs.spamassassin ]; + }; users.extraUsers = singleton { name = "spamd"; @@ -138,7 +142,7 @@ in systemd.services.sa-update = { script = '' - set +e + set +e ${pkgs.su}/bin/su -s "${pkgs.bash}/bin/bash" -c "${pkgs.spamassassin}/bin/sa-update --gpghomedir=/var/lib/spamassassin/sa-update-keys/ --siteconfigpath=${spamdEnv}/" spamd v=$? @@ -153,7 +157,7 @@ in ''; }; - systemd.timers.sa-update = { + systemd.timers.sa-update = { description = "sa-update-service"; partOf = [ "sa-update.service" ]; wantedBy = [ "timers.target" ]; @@ -177,15 +181,10 @@ in # 0 and 1 no error, exitcode > 1 means error: # https://spamassassin.apache.org/full/3.1.x/doc/sa-update.html#exit_codes preStart = '' - # this abstraction requires no centralized config at all - if [ -d /etc/spamassassin ]; then - echo "This spamassassin does not support global '/etc/spamassassin' folder for configuration as this would be impure. Merge your configs into 'services.spamassassin' and remove the '/etc/spamassassin' folder to make this service work. Also see 'https://github.com/NixOS/nixpkgs/pull/26470'."; - exit 1 - fi echo "Recreating '/var/lib/spamasassin' with creating '3.004001' (or similar) and 'sa-update-keys'" mkdir -p /var/lib/spamassassin chown spamd:spamd /var/lib/spamassassin -R - set +e + set +e ${pkgs.su}/bin/su -s "${pkgs.bash}/bin/bash" -c "${pkgs.spamassassin}/bin/sa-update --gpghomedir=/var/lib/spamassassin/sa-update-keys/ --siteconfigpath=${spamdEnv}/" spamd v=$? set -e diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix index d6c8ac547246..0fa9e417785f 100644 --- a/nixos/modules/services/misc/gitlab.nix +++ b/nixos/modules/services/misc/gitlab.nix @@ -414,7 +414,7 @@ in { Make sure the secret is an RSA private key in PEM format. You can generate one with - openssl genrsa 2048openssl genpkey -algorithm RSA -out - -pkeyopt rsa_keygen_bits:2048 + openssl genrsa 2048 ''; }; @@ -567,6 +567,7 @@ in { mkdir -p ${cfg.statePath}/log mkdir -p ${cfg.statePath}/tmp/pids mkdir -p ${cfg.statePath}/tmp/sockets + mkdir -p ${cfg.statePath}/shell rm -rf ${cfg.statePath}/config ${cfg.statePath}/shell/hooks mkdir -p ${cfg.statePath}/config @@ -635,6 +636,13 @@ in { chown -R ${cfg.user}:${cfg.group} ${cfg.statePath} chmod -R ug+rwX,o-rwx+X ${cfg.statePath} chmod -R u+rwX,go-rwx+X ${gitlabEnv.HOME} + chmod -R ug+rwX,o-rwx ${cfg.statePath}/repositories + chmod -R ug-s ${cfg.statePath}/repositories + find ${cfg.statePath}/repositories -type d -print0 | xargs -0 chmod g+s + chmod 700 ${cfg.statePath}/uploads + chown -R git ${cfg.statePath}/uploads + find ${cfg.statePath}/uploads -type f -exec chmod 0644 {} \; + find ${cfg.statePath}/uploads -type d -not -path ${cfg.statePath}/uploads -exec chmod 0700 {} \; ''; serviceConfig = { diff --git a/nixos/modules/services/misc/gitlab.xml b/nixos/modules/services/misc/gitlab.xml index f9636f8e1278..4b00f50abd63 100644 --- a/nixos/modules/services/misc/gitlab.xml +++ b/nixos/modules/services/misc/gitlab.xml @@ -66,6 +66,35 @@ services.gitlab = { db = "uPgq1gtwwHiatiuE0YHqbGa5lEIXH7fMsvuTNgdzJi8P0Dg12gibTzBQbq5LT7PNzcc3BP9P1snHVnduqtGF43PgrQtU7XL93ts6gqe9CBNhjtaqUwutQUDkygP5NrV6"; secret = "devzJ0Tz0POiDBlrpWmcsjjrLaltyiAdS8TtgT9YNBOoUcDsfppiY3IXZjMVtKgXrFImIennFGOpPN8IkP8ATXpRgDD5rxVnKuTTwYQaci2NtaV1XxOQGjdIE50VGsR3"; otp = "e1GATJVuS2sUh7jxiPzZPre4qtzGGaS22FR50Xs1TerRVdgI3CBVUi5XYtQ38W4xFeS4mDqi5cQjExE838iViSzCdcG19XSL6qNsfokQP9JugwiftmhmCadtsnHErBMI"; + jws = '' + -----BEGIN RSA PRIVATE KEY----- + MIIEpAIBAAKCAQEArrtx4oHKwXoqUbMNqnHgAklnnuDon3XG5LJB35yPsXKv/8GK + ke92wkI+s1Xkvsp8tg9BIY/7c6YK4SR07EWL+dB5qwctsWR2Q8z+/BKmTx9D99pm + hnsjuNIXTF7BXrx3RX6BxZpH5Vzzh9nCwWKT/JCFqtwH7afNGGL7aMf+hdaiUg/Q + SD05yRObioiO4iXDolsJOhrnbZvlzVHl1ZYxFJv0H6/Snc0BBA9Fl/3uj6ANpbjP + eXF1SnJCqT87bj46r5NdVauzaRxAsIfqHroHK4UZ98X5LjGQFGvSqTvyjPBS4I1i + s7VJU28ObuutHxIxSlH0ibn4HZqWmKWlTS652wIDAQABAoIBAGtPcUTTw2sJlR3x + 4k2wfAvLexkHNbZhBdKEa5JiO5mWPuLKwUiZEY2CU7Gd6csG3oqNWcm7/IjtC7dz + xV8p4yp8T4yq7vQIJ93B80NqTLtBD2QTvG2RCMJEPMzJUObWxkVmyVpLQyZo7KOd + KE/OM+aj94OUeEYLjRkSCScz1Gvq/qFG/nAy7KPCmN9JDHuhX26WHo2Rr1OnPNT/ + 7diph0bB9F3b8gjjNTqXDrpdAqVOgR/PsjEBz6DMY+bdyMIn87q2yfmMexxRofN6 + LulpzSaa6Yup8N8H6PzVO6KAkQuf1aQRj0sMwGk1IZEnj6I0KbuHIZkw21Nc6sf2 + ESFySDECgYEA1PnCNn5tmLnwe62Ttmrzl20zIS3Me1gUVJ1NTfr6+ai0I9iMYU21 + 5czuAjJPm9JKQF2vY8UAaCj2ZoObtHa/anb3xsCd8NXoM3iJq5JDoXI1ldz3Y+ad + U/bZUg1DLRvAniTuXmw9iOTwTwPxlDIGq5k+wG2Xmi1lk7zH8ezr9BMCgYEA0gfk + EhgcmPH8Z5cU3YYwOdt6HSJOM0OyN4k/5gnkv+HYVoJTj02gkrJmLr+mi1ugKj46 + 7huYO9TVnrKP21tmbaSv1dp5hS3letVRIxSloEtVGXmmdvJvBRzDWos+G+KcvADi + fFCz6w8v9NmO40CB7y/3SxTmSiSxDQeoi9LhDBkCgYEAsPgMWm25sfOnkY2NNUIv + wT8bAlHlHQT2d8zx5H9NttBpR3P0ShJhuF8N0sNthSQ7ULrIN5YGHYcUH+DyLAWU + TuomP3/kfa+xL7vUYb269tdJEYs4AkoppxBySoz8qenqpz422D0G8M6TpIS5Y5Qi + GMrQ6uLl21YnlpiCaFOfSQMCgYEAmZxj1kgEQmhZrnn1LL/D7czz1vMMNrpAUhXz + wg9iWmSXkU3oR1sDIceQrIhHCo2M6thwyU0tXjUft93pEQocM/zLDaGoVxtmRxxV + J08mg8IVD3jFoyFUyWxsBIDqgAKRl38eJsXvkO+ep3mm49Z+Ma3nM+apN3j2dQ0w + 3HLzXaECgYBFLMEAboVFwi5+MZjGvqtpg2PVTisfuJy2eYnPwHs+AXUgi/xRNFjI + YHEa7UBPb5TEPSzWImQpETi2P5ywcUYL1EbN/nqPWmjFnat8wVmJtV4sUpJhubF4 + Vqm9LxIWc1uQ1q1HDCejRIxIN3aSH+wgRS3Kcj8kCTIoXd1aERb04g== + -----END RSA PRIVATE KEY----- + ''; }; extraConfig = { gitlab = { diff --git a/nixos/modules/services/misc/gogs.nix b/nixos/modules/services/misc/gogs.nix index d6e827a53fdf..f6d326e43d94 100644 --- a/nixos/modules/services/misc/gogs.nix +++ b/nixos/modules/services/misc/gogs.nix @@ -25,6 +25,7 @@ let HTTP_ADDR = ${cfg.httpAddress} HTTP_PORT = ${toString cfg.httpPort} ROOT_URL = ${cfg.rootUrl} + STATIC_ROOT_PATH = ${cfg.staticRootPath} [session] COOKIE_NAME = session @@ -175,6 +176,13 @@ in ''; }; + staticRootPath = mkOption { + type = types.str; + default = "${pkgs.gogs.data}"; + example = "/var/lib/gogs/data"; + description = "Upper level of template and static files path."; + }; + extraConfig = mkOption { type = types.str; default = ""; @@ -195,6 +203,8 @@ in runConfig = "${cfg.stateDir}/custom/conf/app.ini"; secretKey = "${cfg.stateDir}/custom/conf/secret_key"; in '' + mkdir -p ${cfg.stateDir} + # copy custom configuration and generate a random secret key if needed ${optionalString (cfg.useWizard == false) '' mkdir -p ${cfg.stateDir}/custom/conf @@ -240,7 +250,7 @@ in }; }; - users = { + users = mkIf (cfg.user == "gogs") { extraUsers.gogs = { description = "Go Git Service"; uid = config.ids.uids.gogs; diff --git a/nixos/modules/services/misc/nix-daemon.nix b/nixos/modules/services/misc/nix-daemon.nix index bf1304ee7ac2..efa3b5b6bd76 100644 --- a/nixos/modules/services/misc/nix-daemon.nix +++ b/nixos/modules/services/misc/nix-daemon.nix @@ -428,7 +428,7 @@ in fi ''; - nix.nrBuildUsers = mkDefault (lib.max 10 cfg.maxJobs); + nix.nrBuildUsers = mkDefault (lib.max 32 cfg.maxJobs); users.extraUsers = nixbldUsers; diff --git a/nixos/modules/services/monitoring/monit.nix b/nixos/modules/services/monitoring/monit.nix index e07ffd2e8b54..71f50cc0f19d 100644 --- a/nixos/modules/services/monitoring/monit.nix +++ b/nixos/modules/services/monitoring/monit.nix @@ -17,20 +17,22 @@ in }; config = mkOption { default = ""; - description = "monit.conf content"; + description = "monitrc content"; }; }; }; config = mkIf config.services.monit.enable { + environment.systemPackages = [ pkgs.monit ]; + environment.etc = [ { source = pkgs.writeTextFile { - name = "monit.conf"; + name = "monitrc"; text = config.services.monit.config; }; - target = "monit.conf"; + target = "monitrc"; mode = "0400"; } ]; @@ -40,9 +42,9 @@ in after = [ "network.target" ]; wantedBy = [ "multi-user.target" ]; serviceConfig = { - ExecStart = "${pkgs.monit}/bin/monit -I -c /etc/monit.conf"; - ExecStop = "${pkgs.monit}/bin/monit -c /etc/monit.conf quit"; - ExecReload = "${pkgs.monit}/bin/monit -c /etc/monit.conf reload"; + ExecStart = "${pkgs.monit}/bin/monit -I -c /etc/monitrc"; + ExecStop = "${pkgs.monit}/bin/monit -c /etc/monitrc quit"; + ExecReload = "${pkgs.monit}/bin/monit -c /etc/monitrc reload"; KillMode = "process"; Restart = "always"; }; diff --git a/nixos/modules/services/network-filesystems/glusterfs.nix b/nixos/modules/services/network-filesystems/glusterfs.nix index e7f52bc4a7d1..8ac9f801dcb8 100644 --- a/nixos/modules/services/network-filesystems/glusterfs.nix +++ b/nixos/modules/services/network-filesystems/glusterfs.nix @@ -41,6 +41,57 @@ in default = "INFO"; }; + useRpcbind = mkOption { + type = types.bool; + description = '' + Enable use of rpcbind. This is required for Gluster's NFS functionality. + + You may want to turn it off to reduce the attack surface for DDoS reflection attacks. + + See https://davelozier.com/glusterfs-and-rpcbind-portmap-ddos-reflection-attacks/ + and https://bugzilla.redhat.com/show_bug.cgi?id=1426842 for details. + ''; + default = true; + }; + + enableGlustereventsd = mkOption { + type = types.bool; + description = "Whether to enable the GlusterFS Events Daemon"; + default = true; + }; + + killMode = mkOption { + type = types.enum ["control-group" "process" "mixed" "none"]; + description = '' + The systemd KillMode to use for glusterd. + + glusterd spawns other daemons like gsyncd. + If you want these to stop when glusterd is stopped (e.g. to ensure + that NixOS config changes are reflected even for these sub-daemons), + set this to 'control-group'. + If however you want running volume processes (glusterfsd) and thus + gluster mounts not be interrupted when glusterd is restarted + (for example, when you want to restart them manually at a later time), + set this to 'process'. + ''; + default = "control-group"; + }; + + stopKillTimeout = mkOption { + type = types.str; + description = '' + The systemd TimeoutStopSec to use. + + After this time after having been asked to shut down, glusterd + (and depending on the killMode setting also its child processes) + are killed by systemd. + + The default is set low because GlusterFS (as of 3.10) is known to + not tell its children (like gsyncd) to terminate at all. + ''; + default = "5s"; + }; + extraFlags = mkOption { type = types.listOf types.str; description = "Extra flags passed to the GlusterFS daemon"; @@ -89,7 +140,7 @@ in config = mkIf cfg.enable { environment.systemPackages = [ pkgs.glusterfs ]; - services.rpcbind.enable = true; + services.rpcbind.enable = cfg.useRpcbind; environment.etc = mkIf (cfg.tlsSettings != null) { "ssl/glusterfs.pem".source = cfg.tlsSettings.tlsPem; @@ -104,9 +155,8 @@ in wantedBy = [ "multi-user.target" ]; - requires = [ "rpcbind.service" ]; - after = [ "rpcbind.service" "network.target" "local-fs.target" ]; - before = [ "network-online.target" ]; + requires = lib.optional cfg.useRpcbind "rpcbind.service"; + after = [ "network.target" "local-fs.target" ] ++ lib.optional cfg.useRpcbind "rpcbind.service"; preStart = '' install -m 0755 -d /var/log/glusterfs @@ -130,11 +180,12 @@ in PIDFile="/run/glusterd.pid"; LimitNOFILE=65536; ExecStart="${glusterfs}/sbin/glusterd -p /run/glusterd.pid --log-level=${cfg.logLevel} ${toString cfg.extraFlags}"; - KillMode="process"; + KillMode=cfg.killMode; + TimeoutStopSec=cfg.stopKillTimeout; }; }; - systemd.services.glustereventsd = { + systemd.services.glustereventsd = mkIf cfg.enableGlustereventsd { inherit restartTriggers; description = "Gluster Events Notifier"; @@ -143,6 +194,10 @@ in after = [ "syslog.target" "network.target" ]; + preStart = '' + install -m 0755 -d /var/log/glusterfs + ''; + serviceConfig = { Type="simple"; Environment="PYTHONPATH=${glusterfs}/usr/lib/python2.7/site-packages"; diff --git a/nixos/modules/services/network-filesystems/ipfs.nix b/nixos/modules/services/network-filesystems/ipfs.nix index 36e5efecf431..d4a695ef5880 100644 --- a/nixos/modules/services/network-filesystems/ipfs.nix +++ b/nixos/modules/services/network-filesystems/ipfs.nix @@ -7,7 +7,7 @@ let ipfsFlags = toString ([ (optionalString cfg.autoMount "--mount") - (optionalString cfg.autoMigrate "--migrate") + #(optionalString cfg.autoMigrate "--migrate") (optionalString cfg.enableGC "--enable-gc") (optionalString (cfg.serviceFdlimit != null) "--manage-fdlimit=false") (optionalString (cfg.defaultMode == "offline") "--offline") @@ -36,6 +36,7 @@ let baseService = recursiveUpdate commonEnv { wants = [ "ipfs-init.service" ]; + # NB: migration must be performed prior to pre-start, else we get the failure message! preStart = '' ipfs repo fsck # workaround for BUG #4212 (https://github.com/ipfs/go-ipfs/issues/4214) ipfs --local config Addresses.API ${cfg.apiAddress} @@ -97,11 +98,17 @@ in { description = "systemd service that is enabled by default"; }; + /* autoMigrate = mkOption { type = types.bool; default = false; - description = "Whether IPFS should try to migrate the file system automatically"; + description = '' + Whether IPFS should try to migrate the file system automatically. + + The daemon will need to be able to download a binary from https://ipfs.io to perform the migration. + ''; }; + */ autoMount = mkOption { type = types.bool; diff --git a/nixos/modules/services/networking/consul.nix b/nixos/modules/services/networking/consul.nix index 166ee7732375..6333970cb338 100644 --- a/nixos/modules/services/networking/consul.nix +++ b/nixos/modules/services/networking/consul.nix @@ -183,6 +183,7 @@ in ExecReload = "${cfg.package.bin}/bin/consul reload"; PermissionsStartOnly = true; User = if cfg.dropPrivileges then "consul" else null; + Restart = "on-failure"; TimeoutStartSec = "0"; } // (optionalAttrs (cfg.leaveOnStop) { ExecStop = "${cfg.package.bin}/bin/consul leave"; diff --git a/nixos/modules/services/networking/softether.nix b/nixos/modules/services/networking/softether.nix index 16530078b978..9087b75c29c1 100644 --- a/nixos/modules/services/networking/softether.nix +++ b/nixos/modules/services/networking/softether.nix @@ -3,7 +3,6 @@ with lib; let - pkg = pkgs.softether; cfg = config.services.softether; in @@ -17,6 +16,15 @@ in enable = mkEnableOption "SoftEther VPN services"; + package = mkOption { + type = types.package; + default = pkgs.softether; + defaultText = "pkgs.softether"; + description = '' + softether derivation to use. + ''; + }; + vpnserver.enable = mkEnableOption "SoftEther VPN Server"; vpnbridge.enable = mkEnableOption "SoftEther VPN Bridge"; @@ -41,7 +49,7 @@ in dataDir = mkOption { type = types.string; - default = "${pkg.dataDir}"; + default = "${cfg.package.dataDir}"; description = '' Data directory for SoftEther VPN. ''; @@ -57,12 +65,13 @@ in mkMerge [{ environment.systemPackages = [ - (pkgs.lib.overrideDerivation pkg (attrs: { + (pkgs.lib.overrideDerivation cfg.package (attrs: { dataDir = cfg.dataDir; })) ]; systemd.services."softether-init" = { description = "SoftEther VPN services initial task"; + wantedBy = [ "network.target" ]; serviceConfig = { Type = "oneshot"; RemainAfterExit = false; @@ -71,11 +80,11 @@ in for d in vpnserver vpnbridge vpnclient vpncmd; do if ! test -e ${cfg.dataDir}/$d; then ${pkgs.coreutils}/bin/mkdir -m0700 -p ${cfg.dataDir}/$d - install -m0600 ${pkg}${cfg.dataDir}/$d/hamcore.se2 ${cfg.dataDir}/$d/hamcore.se2 + install -m0600 ${cfg.package}${cfg.dataDir}/$d/hamcore.se2 ${cfg.dataDir}/$d/hamcore.se2 fi done rm -rf ${cfg.dataDir}/vpncmd/vpncmd - ln -s ${pkg}${cfg.dataDir}/vpncmd/vpncmd ${cfg.dataDir}/vpncmd/vpncmd + ln -s ${cfg.package}${cfg.dataDir}/vpncmd/vpncmd ${cfg.dataDir}/vpncmd/vpncmd ''; }; } @@ -83,17 +92,17 @@ in (mkIf (cfg.vpnserver.enable) { systemd.services.vpnserver = { description = "SoftEther VPN Server"; - after = [ "softether-init.service" "network.target" ]; - wants = [ "softether-init.service" ]; - wantedBy = [ "multi-user.target" ]; + after = [ "softether-init.service" ]; + requires = [ "softether-init.service" ]; + wantedBy = [ "network.target" ]; serviceConfig = { Type = "forking"; - ExecStart = "${pkg}/bin/vpnserver start"; - ExecStop = "${pkg}/bin/vpnserver stop"; + ExecStart = "${cfg.package}/bin/vpnserver start"; + ExecStop = "${cfg.package}/bin/vpnserver stop"; }; preStart = '' rm -rf ${cfg.dataDir}/vpnserver/vpnserver - ln -s ${pkg}${cfg.dataDir}/vpnserver/vpnserver ${cfg.dataDir}/vpnserver/vpnserver + ln -s ${cfg.package}${cfg.dataDir}/vpnserver/vpnserver ${cfg.dataDir}/vpnserver/vpnserver ''; postStop = '' rm -rf ${cfg.dataDir}/vpnserver/vpnserver @@ -104,17 +113,17 @@ in (mkIf (cfg.vpnbridge.enable) { systemd.services.vpnbridge = { description = "SoftEther VPN Bridge"; - after = [ "softether-init.service" "network.target" ]; - wants = [ "softether-init.service" ]; - wantedBy = [ "multi-user.target" ]; + after = [ "softether-init.service" ]; + requires = [ "softether-init.service" ]; + wantedBy = [ "network.target" ]; serviceConfig = { Type = "forking"; - ExecStart = "${pkg}/bin/vpnbridge start"; - ExecStop = "${pkg}/bin/vpnbridge stop"; + ExecStart = "${cfg.package}/bin/vpnbridge start"; + ExecStop = "${cfg.package}/bin/vpnbridge stop"; }; preStart = '' rm -rf ${cfg.dataDir}/vpnbridge/vpnbridge - ln -s ${pkg}${cfg.dataDir}/vpnbridge/vpnbridge ${cfg.dataDir}/vpnbridge/vpnbridge + ln -s ${cfg.package}${cfg.dataDir}/vpnbridge/vpnbridge ${cfg.dataDir}/vpnbridge/vpnbridge ''; postStop = '' rm -rf ${cfg.dataDir}/vpnbridge/vpnbridge @@ -125,17 +134,17 @@ in (mkIf (cfg.vpnclient.enable) { systemd.services.vpnclient = { description = "SoftEther VPN Client"; - after = [ "softether-init.service" "network.target" ]; - wants = [ "softether-init.service" ]; - wantedBy = [ "multi-user.target" ]; + after = [ "softether-init.service" ]; + requires = [ "softether-init.service" ]; + wantedBy = [ "network.target" ]; serviceConfig = { Type = "forking"; - ExecStart = "${pkg}/bin/vpnclient start"; - ExecStop = "${pkg}/bin/vpnclient stop"; + ExecStart = "${cfg.package}/bin/vpnclient start"; + ExecStop = "${cfg.package}/bin/vpnclient stop"; }; preStart = '' rm -rf ${cfg.dataDir}/vpnclient/vpnclient - ln -s ${pkg}${cfg.dataDir}/vpnclient/vpnclient ${cfg.dataDir}/vpnclient/vpnclient + ln -s ${cfg.package}${cfg.dataDir}/vpnclient/vpnclient ${cfg.dataDir}/vpnclient/vpnclient ''; postStart = '' sleep 1 diff --git a/nixos/modules/services/networking/tinc.nix b/nixos/modules/services/networking/tinc.nix index d5db328310c1..adb80ea29840 100644 --- a/nixos/modules/services/networking/tinc.nix +++ b/nixos/modules/services/networking/tinc.nix @@ -141,7 +141,6 @@ in ${optionalString (data.ed25519PrivateKeyFile != null) "Ed25519PrivateKeyFile = ${data.ed25519PrivateKeyFile}"} ${optionalString (data.listenAddress != null) "ListenAddress = ${data.listenAddress}"} ${optionalString (data.bindToAddress != null) "BindToAddress = ${data.bindToAddress}"} - Device = /dev/net/tun Interface = tinc.${network} ${data.extraConfig} ''; @@ -164,10 +163,17 @@ in wantedBy = [ "multi-user.target" ]; after = [ "network.target" ]; path = [ data.package ]; + restartTriggers = + let + drvlist = [ config.environment.etc."tinc/${network}/tinc.conf".source ] + ++ mapAttrsToList (host: _: config.environment.etc."tinc/${network}/hosts/${host}".source) data.hosts; + in # drvlist might be too long to be used directly + [ (builtins.hashString "sha256" (concatMapStrings (d: d.outPath) drvlist)) ]; serviceConfig = { Type = "simple"; Restart = "always"; RestartSec = "3"; + ExecStart = "${data.package}/bin/tincd -D -U tinc.${network} -n ${network} ${optionalString (data.chroot) "-R"} --pidfile /run/tinc.${network}.pid -d ${toString data.debugLevel}"; }; preStart = '' mkdir -p /etc/tinc/${network}/hosts @@ -187,9 +193,6 @@ in [ -f "/etc/tinc/${network}/rsa_key.priv" ] || tincd -n ${network} -K 4096 fi ''; - script = '' - tincd -D -U tinc.${network} -n ${network} ${optionalString (data.chroot) "-R"} --pidfile /run/tinc.${network}.pid -d ${toString data.debugLevel} - ''; }) ); diff --git a/nixos/modules/services/networking/wpa_supplicant.nix b/nixos/modules/services/networking/wpa_supplicant.nix index c91ba91fcb4d..908c8730ad2a 100644 --- a/nixos/modules/services/networking/wpa_supplicant.nix +++ b/nixos/modules/services/networking/wpa_supplicant.nix @@ -148,6 +148,7 @@ in { wants = [ "network.target" ]; requires = lib.concatMap deviceUnit ifaces; wantedBy = [ "multi-user.target" ]; + stopIfChanged = false; path = [ pkgs.wpa_supplicant ]; diff --git a/nixos/modules/services/networking/znc.nix b/nixos/modules/services/networking/znc.nix index 763843fdec00..3d9cec46a582 100644 --- a/nixos/modules/services/networking/znc.nix +++ b/nixos/modules/services/networking/znc.nix @@ -212,6 +212,14 @@ in ''; }; + openFirewall = mkOption { + type = types.bool; + default = false; + description = '' + Whether to open ports in the firewall for ZNC. + ''; + }; + zncConf = mkOption { default = ""; example = "See: http://wiki.znc.in/Configuration"; @@ -276,14 +284,6 @@ in ''; }; - openFirewall = mkOption { - type = types.bool; - default = false; - description = '' - Whether to open ports in the firewall for ZNC. - ''; - }; - passBlock = mkOption { example = defaultPassBlock; type = types.string; @@ -359,7 +359,7 @@ in config = mkIf cfg.enable { networking.firewall = mkIf cfg.openFirewall { - allowedTCPPorts = [ cfg.port ]; + allowedTCPPorts = [ cfg.confOptions.port ]; }; systemd.services.znc = { diff --git a/nixos/modules/services/web-servers/apache-httpd/mediawiki.nix b/nixos/modules/services/web-servers/apache-httpd/mediawiki.nix index aa0fe4f14796..02695c1c43a1 100644 --- a/nixos/modules/services/web-servers/apache-httpd/mediawiki.nix +++ b/nixos/modules/services/web-servers/apache-httpd/mediawiki.nix @@ -83,11 +83,11 @@ let # Unpack Mediawiki and put the config file in its root directory. mediawikiRoot = pkgs.stdenv.mkDerivation rec { - name= "mediawiki-1.27.3"; + name= "mediawiki-1.29.1"; src = pkgs.fetchurl { - url = "http://download.wikimedia.org/mediawiki/1.27/${name}.tar.gz"; - sha256 = "08x8mvc0y1gwq8rg0zm98wc6hc5j8imb6dcpx6s7392j5dc71m0i"; + url = "http://download.wikimedia.org/mediawiki/1.29/${name}.tar.gz"; + sha256 = "03mpazbxvb011s2nmlw5p6dc43yjgl5yrsilmj1imyykm57bwb3m"; }; skins = config.skins; diff --git a/nixos/modules/services/web-servers/traefik.nix b/nixos/modules/services/web-servers/traefik.nix new file mode 100644 index 000000000000..4ede4fc20967 --- /dev/null +++ b/nixos/modules/services/web-servers/traefik.nix @@ -0,0 +1,115 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.services.traefik; + configFile = + if cfg.configFile == null then + pkgs.runCommand "config.toml" { + buildInputs = [ pkgs.remarshal ]; + } '' + remarshal -if json -of toml \ + < ${pkgs.writeText "config.json" (builtins.toJSON cfg.configOptions)} \ + > $out + '' + else cfg.configFile; + +in { + options.services.traefik = { + enable = mkEnableOption "Traefik web server"; + + configFile = mkOption { + default = null; + example = literalExample "/path/to/config.toml"; + type = types.nullOr types.path; + description = '' + Path to verbatim traefik.toml to use. + (Using that option has precedence over <literal>configOptions</literal>) + ''; + }; + + configOptions = mkOption { + description = '' + Config for Traefik. + ''; + type = types.attrs; + default = { + defaultEntryPoints = ["http"]; + entryPoints.http.address = ":80"; + }; + example = { + defaultEntrypoints = [ "http" ]; + web.address = ":8080"; + entryPoints.http.address = ":80"; + + file = {}; + frontends = { + frontend1 = { + backend = "backend1"; + routes.test_1.rule = "Host:localhost"; + }; + }; + backends.backend1 = { + servers.server1.url = "http://localhost:8000"; + }; + }; + }; + + dataDir = mkOption { + default = "/var/lib/traefik"; + type = types.path; + description = '' + Location for any persistent data traefik creates, ie. acme + ''; + }; + + package = mkOption { + default = pkgs.traefik; + defaultText = "pkgs.traefik"; + type = types.package; + description = "Traefik package to use."; + }; + }; + + config = mkIf cfg.enable { + systemd.services.traefik = { + description = "Traefik web server"; + after = [ "network-online.target" ]; + wantedBy = [ "multi-user.target" ]; + serviceConfig = { + PermissionsStartOnly = true; + ExecStart = ''${cfg.package.bin}/bin/traefik --configfile=${configFile}''; + ExecStartPre = [ + ''${pkgs.coreutils}/bin/mkdir -p "${cfg.dataDir}"'' + ''${pkgs.coreutils}/bin/chmod 700 "${cfg.dataDir}"'' + ''${pkgs.coreutils}/bin/chown -R traefik:traefik "${cfg.dataDir}"'' + ]; + Type = "simple"; + User = "traefik"; + Group = "traefik"; + Restart = "on-failure"; + StartLimitInterval = 86400; + StartLimitBurst = 5; + AmbientCapabilities = "cap_net_bind_service"; + CapabilityBoundingSet = "cap_net_bind_service"; + NoNewPrivileges = true; + LimitNPROC = 64; + LimitNOFILE = 1048576; + PrivateTmp = true; + PrivateDevices = true; + ProtectHome = true; + ProtectSystem = "full"; + ReadWriteDirectories = cfg.dataDir; + }; + }; + + users.extraUsers.traefik = { + group = "traefik"; + home = cfg.dataDir; + createHome = true; + }; + + users.extraGroups.traefik = {}; + }; +} diff --git a/nixos/modules/services/x11/display-managers/gdm.nix b/nixos/modules/services/x11/display-managers/gdm.nix index b0a3ff1bb753..83c5c95dae7e 100644 --- a/nixos/modules/services/x11/display-managers/gdm.nix +++ b/nixos/modules/services/x11/display-managers/gdm.nix @@ -64,6 +64,14 @@ in }; }; + wayland = mkOption { + default = true; + description = '' + Allow GDM run on Wayland instead of Xserver + ''; + type = types.bool; + }; + }; }; @@ -94,6 +102,7 @@ in # GDM needs different xserverArgs, presumable because using wayland by default. services.xserver.tty = null; services.xserver.display = null; + services.xserver.verbose = null; services.xserver.displayManager.job = { @@ -139,6 +148,7 @@ in # presented and there's a little delay. environment.etc."gdm/custom.conf".text = '' [daemon] + WaylandEnable=${if cfg.gdm.wayland then "true" else "false"} ${optionalString cfg.gdm.autoLogin.enable ( if cfg.gdm.autoLogin.delay > 0 then '' TimedLoginEnable=true diff --git a/nixos/modules/services/x11/xserver.nix b/nixos/modules/services/x11/xserver.nix index 3ce124d3da27..d4fe475690ce 100644 --- a/nixos/modules/services/x11/xserver.nix +++ b/nixos/modules/services/x11/xserver.nix @@ -480,6 +480,15 @@ in ''; }; + verbose = mkOption { + type = types.nullOr types.int; + default = 3; + example = 7; + description = '' + Controls verbosity of X logging. + ''; + }; + useGlamor = mkOption { type = types.bool; default = false; @@ -631,10 +640,11 @@ in [ "-config ${configFile}" "-xkbdir" "${cfg.xkbDir}" # Log at the default verbosity level to stderr rather than /var/log/X.*.log. - "-verbose" "3" "-logfile" "/dev/null" + "-logfile" "/dev/null" ] ++ optional (cfg.display != null) ":${toString cfg.display}" ++ optional (cfg.tty != null) "vt${toString cfg.tty}" ++ optional (cfg.dpi != null) "-dpi ${toString cfg.dpi}" + ++ optional (cfg.verbose != null) "-verbose ${toString cfg.verbose}" ++ optional (!cfg.enableTCP) "-nolisten tcp" ++ optional (cfg.autoRepeatDelay != null) "-ardelay ${toString cfg.autoRepeatDelay}" ++ optional (cfg.autoRepeatInterval != null) "-arinterval ${toString cfg.autoRepeatInterval}" diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index ed1f5d20afb6..dd9ba7104485 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -875,7 +875,12 @@ in systemd.services.systemd-remount-fs.restartIfChanged = false; systemd.services.systemd-update-utmp.restartIfChanged = false; systemd.services.systemd-user-sessions.restartIfChanged = false; # Restart kills all active sessions. - systemd.services.systemd-logind.restartTriggers = [ config.environment.etc."systemd/logind.conf".source ]; + # Restarting systemd-logind breaks X11 + # - upstream commit: https://cgit.freedesktop.org/xorg/xserver/commit/?id=dc48bd653c7e101 + # - systemd announcement: https://github.com/systemd/systemd/blob/22043e4317ecd2bc7834b48a6d364de76bb26d91/NEWS#L103-L112 + # - this might be addressed in the future by xorg + #systemd.services.systemd-logind.restartTriggers = [ config.environment.etc."systemd/logind.conf".source ]; + systemd.services.systemd-logind.restartIfChanged = false; systemd.services.systemd-logind.stopIfChanged = false; systemd.services.systemd-journald.restartTriggers = [ config.environment.etc."systemd/journald.conf".source ]; systemd.services.systemd-journald.stopIfChanged = false; diff --git a/nixos/modules/tasks/encrypted-devices.nix b/nixos/modules/tasks/encrypted-devices.nix index fa0abb43c0ce..6bbf335e7db7 100644 --- a/nixos/modules/tasks/encrypted-devices.nix +++ b/nixos/modules/tasks/encrypted-devices.nix @@ -57,7 +57,7 @@ in config = mkIf anyEncrypted { assertions = map (dev: { - assertion = dev.label != null; + assertion = dev.encrypted.label != null; message = '' The filesystem for ${dev.mountPoint} has encrypted.enable set to true, but no encrypted.label set ''; diff --git a/nixos/modules/tasks/filesystems/zfs.nix b/nixos/modules/tasks/filesystems/zfs.nix index 145fae432c65..7fee99115329 100644 --- a/nixos/modules/tasks/filesystems/zfs.nix +++ b/nixos/modules/tasks/filesystems/zfs.nix @@ -140,6 +140,17 @@ in this once. ''; }; + + requestEncryptionCredentials = mkOption { + type = types.bool; + default = config.boot.zfs.enableUnstable; + description = '' + Request encryption keys or passwords for all encrypted datasets on import. + + Dataset encryption is only supported in zfsUnstable at the moment. + ''; + }; + }; services.zfs.autoSnapshot = { @@ -263,6 +274,10 @@ in assertion = !cfgZfs.forceImportAll || cfgZfs.forceImportRoot; message = "If you enable boot.zfs.forceImportAll, you must also enable boot.zfs.forceImportRoot"; } + { + assertion = cfgZfs.requestEncryptionCredentials -> cfgZfs.enableUnstable; + message = "This feature is only available for zfs unstable. Set the NixOS option boot.zfs.enableUnstable."; + } ]; boot = { @@ -306,6 +321,9 @@ in done echo if [[ -n "$msg" ]]; then echo "$msg"; fi + ${lib.optionalString cfgZfs.requestEncryptionCredentials '' + zfs load-key -a + ''} '') rootPools)); }; diff --git a/nixos/modules/tasks/kbd.nix b/nixos/modules/tasks/kbd.nix index 3975dd5b0ffd..7fb3cbc5c1bc 100644 --- a/nixos/modules/tasks/kbd.nix +++ b/nixos/modules/tasks/kbd.nix @@ -98,22 +98,10 @@ in '') config.i18n.consoleColors} ''; - /* XXX: systemd-vconsole-setup needs a "main" terminal. By default - * /dev/tty0 is used which wouldn't work when the service is restarted - * from X11. We set this to /dev/tty1; not ideal because it may also be - * owned by X11 or something else. - * - * See #22470. - */ systemd.services."systemd-vconsole-setup" = - { wantedBy = [ "sysinit.target" ]; - before = [ "display-manager.service" ]; + { before = [ "display-manager.service" ]; after = [ "systemd-udev-settle.service" ]; restartTriggers = [ vconsoleConf kbdEnv ]; - serviceConfig.ExecStart = [ - "" - "${pkgs.systemd}/lib/systemd/systemd-vconsole-setup /dev/tty1" - ]; }; } diff --git a/nixos/modules/tasks/network-interfaces-scripted.nix b/nixos/modules/tasks/network-interfaces-scripted.nix index 3512296dff4a..e92c9bc27def 100644 --- a/nixos/modules/tasks/network-interfaces-scripted.nix +++ b/nixos/modules/tasks/network-interfaces-scripted.nix @@ -122,24 +122,32 @@ let # Set the default gateway. ${optionalString (cfg.defaultGateway != null && cfg.defaultGateway.address != "") '' - # FIXME: get rid of "|| true" (necessary to make it idempotent). - ip route add default ${optionalString (cfg.defaultGateway.metric != null) + ${optionalString (cfg.defaultGateway.interface != null) '' + ip route replace ${cfg.defaultGateway.address} dev ${cfg.defaultGateway.interface} ${optionalString (cfg.defaultGateway.metric != null) + "metric ${toString cfg.defaultGateway.metric}" + } proto static + ''} + ip route replace default ${optionalString (cfg.defaultGateway.metric != null) "metric ${toString cfg.defaultGateway.metric}" } via "${cfg.defaultGateway.address}" ${ optionalString (cfg.defaultGatewayWindowSize != null) "window ${toString cfg.defaultGatewayWindowSize}"} ${ optionalString (cfg.defaultGateway.interface != null) - "dev ${cfg.defaultGateway.interface}"} proto static || true + "dev ${cfg.defaultGateway.interface}"} proto static ''} ${optionalString (cfg.defaultGateway6 != null && cfg.defaultGateway6.address != "") '' - # FIXME: get rid of "|| true" (necessary to make it idempotent). - ip -6 route add ::/0 ${optionalString (cfg.defaultGateway6.metric != null) + ${optionalString (cfg.defaultGateway6.interface != null) '' + ip -6 route replace ${cfg.defaultGateway6.address} dev ${cfg.defaultGateway6.interface} ${optionalString (cfg.defaultGateway6.metric != null) + "metric ${toString cfg.defaultGateway6.metric}" + } proto static + ''} + ip -6 route replace default ${optionalString (cfg.defaultGateway6.metric != null) "metric ${toString cfg.defaultGateway6.metric}" } via "${cfg.defaultGateway6.address}" ${ optionalString (cfg.defaultGatewayWindowSize != null) "window ${toString cfg.defaultGatewayWindowSize}"} ${ optionalString (cfg.defaultGateway6.interface != null) - "dev ${cfg.defaultGateway6.interface}"} proto static || true + "dev ${cfg.defaultGateway6.interface}"} proto static ''} ''; }; diff --git a/nixos/modules/virtualisation/ec2-amis.nix b/nixos/modules/virtualisation/ec2-amis.nix index 745518f85972..14826b6272f7 100644 --- a/nixos/modules/virtualisation/ec2-amis.nix +++ b/nixos/modules/virtualisation/ec2-amis.nix @@ -223,5 +223,21 @@ let self = { "17.03".us-west-2.hvm-ebs = "ami-a93daac9"; "17.03".us-west-2.hvm-s3 = "ami-5139ae31"; - latest = self."17.03"; + # 17.09.1483.d0f0657ca0 + "17.09".eu-west-1.hvm-ebs = "ami-cf33e7b6"; + "17.09".eu-west-2.hvm-ebs = "ami-7d061419"; + "17.09".eu-central-1.hvm-ebs = "ami-7548fa1a"; + "17.09".us-east-1.hvm-ebs = "ami-6f669d15"; + "17.09".us-east-2.hvm-ebs = "ami-cbe1ccae"; + "17.09".us-west-1.hvm-ebs = "ami-9d95a5fd"; + "17.09".us-west-2.hvm-ebs = "ami-d3956fab"; + "17.09".ca-central-1.hvm-ebs = "ami-ee4ef78a"; + "17.09".ap-southeast-1.hvm-ebs = "ami-1dfc807e"; + "17.09".ap-southeast-2.hvm-ebs = "ami-dcb350be"; + "17.09".ap-northeast-1.hvm-ebs = "ami-00ec3d66"; + "17.09".ap-northeast-2.hvm-ebs = "ami-1107dd7f"; + "17.09".sa-east-1.hvm-ebs = "ami-0377086f"; + "17.09".ap-south-1.hvm-ebs = "ami-4a064625"; + + latest = self."17.09"; }; in self diff --git a/nixos/modules/virtualisation/grow-partition.nix b/nixos/modules/virtualisation/grow-partition.nix index 5039118d78ee..2cb932d208f0 100644 --- a/nixos/modules/virtualisation/grow-partition.nix +++ b/nixos/modules/virtualisation/grow-partition.nix @@ -24,7 +24,12 @@ with lib; copy_bin_and_libs ${pkgs.gnused}/bin/sed copy_bin_and_libs ${pkgs.utillinux}/sbin/sfdisk copy_bin_and_libs ${pkgs.utillinux}/sbin/lsblk - cp -v ${pkgs.cloud-utils}/bin/.growpart-wrapped $out/bin/growpart + + substitute "${pkgs.cloud-utils}/bin/.growpart-wrapped" "$out/bin/growpart" \ + --replace "${pkgs.bash}/bin/sh" "/bin/sh" \ + --replace "awk" "gawk" \ + --replace "sed" "gnused" + ln -s sed $out/bin/gnused ''; diff --git a/nixos/release.nix b/nixos/release.nix index ac7755a160f4..ee706ff986d4 100644 --- a/nixos/release.nix +++ b/nixos/release.nix @@ -278,11 +278,13 @@ in rec { tests.login = callTest tests/login.nix {}; #tests.logstash = callTest tests/logstash.nix {}; tests.mathics = callTest tests/mathics.nix {}; + tests.mesos = callTest tests/mesos.nix {}; tests.misc = callTest tests/misc.nix {}; tests.mongodb = callTest tests/mongodb.nix {}; tests.mumble = callTest tests/mumble.nix {}; tests.munin = callTest tests/munin.nix {}; tests.mysql = callTest tests/mysql.nix {}; + tests.mysqlBackup = callTest tests/mysql-backup.nix {}; tests.mysqlReplication = callTest tests/mysql-replication.nix {}; tests.nat.firewall = callTest tests/nat.nix { withFirewall = true; }; tests.nat.firewall-conntrack = callTest tests/nat.nix { withFirewall = true; withConntrackHelpers = true; }; @@ -301,7 +303,7 @@ in rec { #tests.panamax = hydraJob (import tests/panamax.nix { system = "x86_64-linux"; }); tests.peerflix = callTest tests/peerflix.nix {}; tests.postgresql = callSubTests tests/postgresql.nix {}; - tests.pgjwt = callTest tests/pgjwt.nix {}; + #tests.pgjwt = callTest tests/pgjwt.nix {}; tests.printing = callTest tests/printing.nix {}; tests.proxy = callTest tests/proxy.nix {}; tests.pumpio = callTest tests/pump.io.nix {}; diff --git a/nixos/tests/gnome3-gdm.nix b/nixos/tests/gnome3-gdm.nix index 2c9c745021af..4b459e93e1be 100644 --- a/nixos/tests/gnome3-gdm.nix +++ b/nixos/tests/gnome3-gdm.nix @@ -21,7 +21,7 @@ import ./make-test.nix ({ pkgs, ...} : { }; services.xserver.desktopManager.gnome3.enable = true; - virtualisation.memorySize = 512; + virtualisation.memorySize = 1024; }; testScript = diff --git a/nixos/tests/krb5/default.nix b/nixos/tests/krb5/default.nix new file mode 100644 index 000000000000..dd5b2f37202e --- /dev/null +++ b/nixos/tests/krb5/default.nix @@ -0,0 +1,5 @@ +{ system ? builtins.currentSystem }: +{ + example-config = import ./example-config.nix { inherit system; }; + deprecated-config = import ./deprecated-config.nix { inherit system; }; +} diff --git a/nixos/tests/krb5/deprecated-config.nix b/nixos/tests/krb5/deprecated-config.nix new file mode 100644 index 000000000000..980b3e762dc6 --- /dev/null +++ b/nixos/tests/krb5/deprecated-config.nix @@ -0,0 +1,48 @@ +# Verifies that the configuration suggested in deprecated example values +# will result in the expected output. + +import ../make-test.nix ({ pkgs, ...} : { + name = "krb5-with-deprecated-config"; + meta = with pkgs.stdenv.lib.maintainers; { + maintainers = [ eqyiel ]; + }; + + machine = + { config, pkgs, ... }: { + krb5 = { + enable = true; + defaultRealm = "ATHENA.MIT.EDU"; + domainRealm = "athena.mit.edu"; + kdc = "kerberos.mit.edu"; + kerberosAdminServer = "kerberos.mit.edu"; + }; + }; + + testScript = + let snapshot = pkgs.writeText "krb5-with-deprecated-config.conf" '' + [libdefaults] + default_realm = ATHENA.MIT.EDU + + [realms] + ATHENA.MIT.EDU = { + admin_server = kerberos.mit.edu + kdc = kerberos.mit.edu + } + + [domain_realm] + .athena.mit.edu = ATHENA.MIT.EDU + athena.mit.edu = ATHENA.MIT.EDU + + [capaths] + + + [appdefaults] + + + [plugins] + + ''; + in '' + $machine->succeed("diff /etc/krb5.conf ${snapshot}"); + ''; +}) diff --git a/nixos/tests/krb5/example-config.nix b/nixos/tests/krb5/example-config.nix new file mode 100644 index 000000000000..d5328720931e --- /dev/null +++ b/nixos/tests/krb5/example-config.nix @@ -0,0 +1,106 @@ +# Verifies that the configuration suggested in (non-deprecated) example values +# will result in the expected output. + +import ../make-test.nix ({ pkgs, ...} : { + name = "krb5-with-example-config"; + meta = with pkgs.stdenv.lib.maintainers; { + maintainers = [ eqyiel ]; + }; + + machine = + { config, pkgs, ... }: { + krb5 = { + enable = true; + kerberos = pkgs.krb5Full; + libdefaults = { + default_realm = "ATHENA.MIT.EDU"; + }; + realms = { + "ATHENA.MIT.EDU" = { + admin_server = "athena.mit.edu"; + kdc = "athena.mit.edu"; + }; + }; + domain_realm = { + "example.com" = "EXAMPLE.COM"; + ".example.com" = "EXAMPLE.COM"; + }; + capaths = { + "ATHENA.MIT.EDU" = { + "EXAMPLE.COM" = "."; + }; + "EXAMPLE.COM" = { + "ATHENA.MIT.EDU" = "."; + }; + }; + appdefaults = { + pam = { + debug = false; + ticket_lifetime = 36000; + renew_lifetime = 36000; + max_timeout = 30; + timeout_shift = 2; + initial_timeout = 1; + }; + }; + plugins = { + ccselect = { + disable = "k5identity"; + }; + }; + extraConfig = '' + [logging] + kdc = SYSLOG:NOTICE + admin_server = SYSLOG:NOTICE + default = SYSLOG:NOTICE + ''; + }; + }; + + testScript = + let snapshot = pkgs.writeText "krb5-with-example-config.conf" '' + [libdefaults] + default_realm = ATHENA.MIT.EDU + + [realms] + ATHENA.MIT.EDU = { + admin_server = athena.mit.edu + kdc = athena.mit.edu + } + + [domain_realm] + .example.com = EXAMPLE.COM + example.com = EXAMPLE.COM + + [capaths] + ATHENA.MIT.EDU = { + EXAMPLE.COM = . + } + EXAMPLE.COM = { + ATHENA.MIT.EDU = . + } + + [appdefaults] + pam = { + debug = false + initial_timeout = 1 + max_timeout = 30 + renew_lifetime = 36000 + ticket_lifetime = 36000 + timeout_shift = 2 + } + + [plugins] + ccselect = { + disable = k5identity + } + + [logging] + kdc = SYSLOG:NOTICE + admin_server = SYSLOG:NOTICE + default = SYSLOG:NOTICE + ''; + in '' + $machine->succeed("diff /etc/krb5.conf ${snapshot}"); + ''; +}) diff --git a/nixos/tests/mesos.nix b/nixos/tests/mesos.nix index 6e9af126f032..34671df047c8 100644 --- a/nixos/tests/mesos.nix +++ b/nixos/tests/mesos.nix @@ -56,9 +56,7 @@ import ./make-test.nix ({ pkgs, ...} : rec { src = ./mesos_test.py; phases = [ "installPhase" "fixupPhase" ]; installPhase = '' - mkdir $out - cp $src $out/mesos_test.py - chmod +x $out/mesos_test.py + install -Dvm 0755 $src $out/bin/mesos_test.py echo "done" > test.result tar czf $out/test.tar.gz test.result @@ -74,18 +72,18 @@ import ./make-test.nix ({ pkgs, ...} : rec { $master->waitForOpenPort(5050); $slave->waitForOpenPort(5051); - # is slave registred? + # is slave registered? $master->waitUntilSucceeds("curl -s --fail http://master:5050/master/slaves". " | grep -q \"\\\"hostname\\\":\\\"slave\\\"\""); - # try to run docker image + # try to run docker image $master->succeed("${pkgs.mesos}/bin/mesos-execute --master=master:5050". " --resources=\"cpus:0.1;mem:32\" --name=simple-docker". " --containerizer=mesos --docker_image=echo:latest". " --shell=true --command=\"echo done\" | grep -q TASK_FINISHED"); # simple command with .tar.gz uri - $master->succeed("${testFramework}/mesos_test.py master ". + $master->succeed("${testFramework}/bin/mesos_test.py master ". "${testFramework}/test.tar.gz"); ''; }) diff --git a/nixos/tests/mysql-backup.nix b/nixos/tests/mysql-backup.nix new file mode 100644 index 000000000000..f5bcc460cba7 --- /dev/null +++ b/nixos/tests/mysql-backup.nix @@ -0,0 +1,42 @@ +# Test whether mysqlBackup option works +import ./make-test.nix ({ pkgs, ... } : { + name = "mysql-backup"; + meta = with pkgs.stdenv.lib.maintainers; { + maintainers = [ rvl ]; + }; + + nodes = { + master = { config, pkgs, ... }: { + services.mysql = { + enable = true; + initialDatabases = [ { name = "testdb"; schema = ./testdb.sql; } ]; + package = pkgs.mysql; + }; + + services.mysqlBackup = { + enable = true; + databases = [ "doesnotexist" "testdb" ]; + }; + }; + }; + + testScript = + '' startAll; + + # Need to have mysql started so that it can be populated with data. + $master->waitForUnit("mysql.service"); + + # Wait for testdb to be populated. + $master->sleep(10); + + # Do a backup and wait for it to finish. + $master->startJob("mysql-backup.service"); + $master->waitForJob("mysql-backup.service"); + + # Check that data appears in backup + $master->succeed("${pkgs.gzip}/bin/zcat /var/backup/mysql/testdb.gz | grep hello"); + + # Check that a failed backup is logged + $master->succeed("journalctl -u mysql-backup.service | grep 'fail.*doesnotexist' > /dev/null"); + ''; +}) diff --git a/nixos/tests/pgjwt.nix b/nixos/tests/pgjwt.nix index 2cf2963ae316..d186c42a2a98 100644 --- a/nixos/tests/pgjwt.nix +++ b/nixos/tests/pgjwt.nix @@ -1,42 +1,37 @@ -import ./make-test.nix ({ pkgs, ...} : +import ./make-test.nix ({ pkgs, lib, ...}: let - test = pkgs.writeText "test.sql" '' - CREATE EXTENSION pgcrypto; - CREATE EXTENSION pgjwt; - select sign('{"sub":"1234567890","name":"John Doe","admin":true}', 'secret'); - select * from verify('eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiYWRtaW4iOnRydWV9.TJVA95OrM7E2cBab30RMHrHDcEfxjoYZgeFONFh7HgQ', 'secret'); + test = with pkgs; runCommand "patch-test" { + nativeBuildInputs = [ pgjwt ]; + } + '' + sed -e '12 i CREATE EXTENSION pgcrypto;\nCREATE EXTENSION pgtap;\nSET search_path TO tap,public;' ${pgjwt.src}/test.sql > $out; ''; in -{ +with pkgs; { name = "pgjwt"; - meta = with pkgs.stdenv.lib.maintainers; { - maintainers = [ spinus ]; + meta = with lib.maintainers; { + maintainers = [ spinus willibutz ]; }; nodes = { - master = - { pkgs, config, ... }: - - { - services.postgresql = let mypg = pkgs.postgresql95; in { - enable = true; - package = mypg; - extraPlugins =[pkgs.pgjwt]; - initialScript = pkgs.writeText "postgresql-init.sql" - '' - CREATE ROLE postgres WITH superuser login createdb; - ''; - }; + master = { pkgs, config, ... }: + { + services.postgresql = { + enable = true; + extraPlugins = [ pgjwt pgtap ]; }; + }; }; - testScript = '' + testScript = { nodes, ... }: + let + sqlSU = "${nodes.master.config.services.postgresql.superUser}"; + pgProve = "${pkgs.perlPackages.TAPParserSourceHandlerpgTAP}"; + in + '' startAll; $master->waitForUnit("postgresql"); - $master->succeed("timeout 10 bash -c 'while ! psql postgres -c \"SELECT 1;\";do sleep 1;done;'"); - $master->succeed("cat ${test} | psql postgres"); - # I can't make original test working :[ - # $master->succeed("${pkgs.perlPackages.TAPParserSourceHandlerpgTAP}/bin/pg_prove -d postgres ${pkgs.pgjwt.src}/test.sql"); - + $master->copyFileFromHost("${test}","/tmp/test.sql"); + $master->succeed("${pkgs.sudo}/bin/sudo -u ${sqlSU} PGOPTIONS=--search_path=tap,public ${pgProve}/bin/pg_prove -d postgres -v -f /tmp/test.sql"); ''; }) diff --git a/nixos/tests/testdb.sql b/nixos/tests/testdb.sql index 4fb28fea3df9..3c68c49ae82c 100644 --- a/nixos/tests/testdb.sql +++ b/nixos/tests/testdb.sql @@ -8,3 +8,4 @@ insert into tests values (1, 'a'); insert into tests values (2, 'b'); insert into tests values (3, 'c'); insert into tests values (4, 'd'); +insert into tests values (5, 'hello'); diff --git a/pkgs/applications/altcoins/bitcoin-abc.nix b/pkgs/applications/altcoins/bitcoin-abc.nix new file mode 100644 index 000000000000..d3800062b119 --- /dev/null +++ b/pkgs/applications/altcoins/bitcoin-abc.nix @@ -0,0 +1,43 @@ +{ stdenv, fetchFromGitHub, pkgconfig, autoreconfHook, openssl, db48, boost +, zlib, miniupnpc, qt5, utillinux, protobuf, qrencode, libevent +, withGui }: + +with stdenv.lib; + +stdenv.mkDerivation rec { + + name = "bitcoin" + (toString (optional (!withGui) "d")) + "-abc-" + version; + version = "0.15.0"; + + src = fetchFromGitHub { + owner = "bitcoin-ABC"; + repo = "bitcoin-abc"; + rev = "v${version}"; + sha256 = "1fygn6cc99iasg5g5jyps5ps873hfnn4ln4hsmcwlwiqd591qxyv"; + }; + + patches = [ ./fix-bitcoin-qt-build.patch ]; + + nativeBuildInputs = [ pkgconfig autoreconfHook ]; + buildInputs = [ openssl db48 boost zlib + miniupnpc utillinux protobuf libevent ] + ++ optionals withGui [ qt5.qtbase qt5.qttools qrencode ]; + + configureFlags = [ "--with-boost-libdir=${boost.out}/lib" ] + ++ optionals withGui [ "--with-gui=qt5" ]; + + meta = { + description = "Peer-to-peer electronic cash system (Cash client)"; + longDescription= '' + Bitcoin ABC is the name of open source software which enables the use of Bitcoin. + It is designed to facilite a hard fork to increase Bitcoin's block size limit. + "ABC" stands for "Adjustable Blocksize Cap". + + Bitcoin ABC is a fork of the Bitcoin Core software project. + ''; + homepage = https://bitcoinabc.org/; + maintainers = with maintainers; [ lassulus ]; + license = licenses.mit; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/altcoins/dapp.nix b/pkgs/applications/altcoins/dapp.nix index 51de4d202e84..6ad66a24397f 100644 --- a/pkgs/applications/altcoins/dapp.nix +++ b/pkgs/applications/altcoins/dapp.nix @@ -1,15 +1,15 @@ { lib, stdenv, fetchFromGitHub, makeWrapper -, seth, git, solc, shellcheck, nodejs, hsevm }: +, seth, git, solc, shellcheck, nodejs, hevm }: stdenv.mkDerivation rec { name = "dapp"; - version = "0.5.3"; + version = "0.5.7"; src = fetchFromGitHub { owner = "dapphub"; repo = "dapp"; rev = "v${version}"; - sha256 = "13b2krd02py8jnzjis44lay5i31d95z0myrsy5afzw7fa25giird"; + sha256 = "128f35hczarihb263as391wr9zbyc1q1p49qbxh30via23r1brb0"; }; nativeBuildInputs = [makeWrapper shellcheck]; @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { checkPhase = "make test"; makeFlags = ["prefix=$(out)"]; postInstall = let path = lib.makeBinPath [ - nodejs solc git seth hsevm + nodejs solc git seth hevm ]; in '' wrapProgram "$out/bin/dapp" --prefix PATH : "${path}" ''; diff --git a/pkgs/applications/altcoins/default.nix b/pkgs/applications/altcoins/default.nix index 31dcc78d3d7f..395a440690b1 100644 --- a/pkgs/applications/altcoins/default.nix +++ b/pkgs/applications/altcoins/default.nix @@ -1,10 +1,13 @@ -{ callPackage, boost155, boost162, boost163, openssl_1_1_0, haskellPackages }: +{ callPackage, boost155, boost162, boost163, openssl_1_1_0, haskellPackages, darwin }: rec { bitcoin = callPackage ./bitcoin.nix { withGui = true; }; bitcoind = callPackage ./bitcoin.nix { withGui = false; }; + bitcoin-abc = callPackage ./bitcoin-abc.nix { withGui = true; }; + bitcoind-abc = callPackage ./bitcoin-abc.nix { withGui = false; }; + bitcoin-unlimited = callPackage ./bitcoin-unlimited.nix { withGui = true; }; bitcoind-unlimited = callPackage ./bitcoin-unlimited.nix { withGui = false; }; @@ -23,7 +26,10 @@ rec { dogecoind = callPackage ./dogecoin.nix { withGui = false; }; freicoin = callPackage ./freicoin.nix { boost = boost155; }; - go-ethereum = callPackage ./go-ethereum.nix { }; + go-ethereum = callPackage ./go-ethereum.nix { + inherit (darwin) libobjc; + inherit (darwin.apple_sdk.frameworks) IOKit; + }; go-ethereum-classic = callPackage ./go-ethereum-classic { }; hivemind = callPackage ./hivemind.nix { withGui = true; }; @@ -43,7 +49,7 @@ rec { seth = callPackage ./seth.nix { }; dapp = callPackage ./dapp.nix { }; - hsevm = (haskellPackages.callPackage ./hsevm.nix {}); + hevm = (haskellPackages.callPackage ./hevm.nix {}); primecoin = callPackage ./primecoin.nix { withGui = true; }; primecoind = callPackage ./primecoin.nix { withGui = false; }; diff --git a/pkgs/applications/altcoins/fix-bitcoin-qt-build.patch b/pkgs/applications/altcoins/fix-bitcoin-qt-build.patch new file mode 100644 index 000000000000..cbbfd85fe5bf --- /dev/null +++ b/pkgs/applications/altcoins/fix-bitcoin-qt-build.patch @@ -0,0 +1,15 @@ +--- bitcoin-abc-v0.15.0-src/build-aux/m4/bitcoin_qt.m4 1970-01-01 01:00:01.000000000 +0100 ++++ bitcoin-abc-v0.15.0-src.org/build-aux/m4/bitcoin_qt.m4 2017-09-27 23:38:44.748384197 +0100 +@@ -35,11 +35,7 @@ + dnl Output: $1 is set to the path of $2 if found. $2 are searched in order. + AC_DEFUN([BITCOIN_QT_PATH_PROGS],[ + BITCOIN_QT_CHECK([ +- if test "x$3" != "x"; then +- AC_PATH_PROGS($1,$2,,$3) +- else +- AC_PATH_PROGS($1,$2) +- fi ++ AC_PATH_PROGS($1,$2) + if test "x$$1" = "x" && test "x$4" != "xyes"; then + BITCOIN_QT_FAIL([$1 not found]) + fi diff --git a/pkgs/applications/altcoins/go-ethereum.nix b/pkgs/applications/altcoins/go-ethereum.nix index 4cf68fb76fd6..279e767173a2 100644 --- a/pkgs/applications/altcoins/go-ethereum.nix +++ b/pkgs/applications/altcoins/go-ethereum.nix @@ -1,10 +1,14 @@ -{ stdenv, lib, buildGoPackage, fetchFromGitHub }: +{ stdenv, lib, buildGoPackage, fetchFromGitHub, libobjc, IOKit }: buildGoPackage rec { name = "go-ethereum-${version}"; - version = "1.7.0"; + version = "1.7.1"; goPackagePath = "github.com/ethereum/go-ethereum"; + # Fix for usb-related segmentation faults on darwin + propagatedBuildInputs = + stdenv.lib.optionals stdenv.isDarwin [ libobjc IOKit ]; + # Fixes Cgo related build failures (see https://github.com/NixOS/nixpkgs/issues/25959 ) hardeningDisable = [ "fortify" ]; @@ -12,7 +16,7 @@ buildGoPackage rec { owner = "ethereum"; repo = "go-ethereum"; rev = "v${version}"; - sha256 = "0ybjaiyrfb320rab6a5r9iiqvkrcd8b2qvixzx0kjmc4a7l1q5zh"; + sha256 = "1rhqnqp2d951d4084z7dc07q0my4wd5401968a0nqj030a9vgng2"; }; # Fix cyclic referencing on Darwin diff --git a/pkgs/applications/altcoins/hsevm.nix b/pkgs/applications/altcoins/hevm.nix index 173ac83a6db4..51e5f6bcb298 100644 --- a/pkgs/applications/altcoins/hsevm.nix +++ b/pkgs/applications/altcoins/hevm.nix @@ -1,24 +1,28 @@ -{ mkDerivation, abstract-par, aeson, ansi-wl-pprint, base +{ mkDerivation, abstract-par, aeson, ansi-wl-pprint, async, base , base16-bytestring, base64-bytestring, binary, brick, bytestring , cereal, containers, cryptonite, data-dword, deepseq, directory -, filepath, ghci-pretty, here, HUnit, lens, lens-aeson, memory -, monad-par, mtl, optparse-generic, process, QuickCheck -, quickcheck-text, readline, rosezipper, scientific, stdenv, tasty, tasty-hunit -, tasty-quickcheck, temporary, text, text-format -, unordered-containers, vector, vty +, filepath, ghci-pretty, here, HUnit, lens +, lens-aeson, memory, monad-par, mtl, optparse-generic, process +, QuickCheck, quickcheck-text, readline, rosezipper, scientific +, stdenv, tasty, tasty-hunit, tasty-quickcheck, temporary, text +, text-format, time, unordered-containers, vector, vty + +, restless-git + , fetchFromGitHub, lib, makeWrapper , ncurses, zlib, bzip2, solc, coreutils +, bash }: lib.overrideDerivation (mkDerivation rec { - pname = "hsevm"; - version = "0.6.4"; + pname = "hevm"; + version = "0.8.5"; src = fetchFromGitHub { owner = "dapphub"; - repo = "hsevm"; + repo = "hevm"; rev = "v${version}"; - sha256 = "01b67k9cam4gvsi07q3vx527m1w6p6xll64k1nl27bc8ik6jh8l9"; + sha256 = "1a27bh0azf2hdg5hp6s9azv2rhzy7vrlq1kmg688g9nfwwwhgkp0"; }; isLibrary = false; @@ -26,8 +30,9 @@ lib.overrideDerivation (mkDerivation rec { enableSharedExecutables = false; postInstall = '' - rm -rf $out/{lib,share} - wrapProgram $out/bin/hsevm --add-flags '+RTS -N$((`${coreutils}/bin/nproc` - 1)) -RTS' + wrapProgram $out/bin/hevm \ + --add-flags '+RTS -N$((`${coreutils}/bin/nproc` - 1)) -RTS' \ + --suffix PATH : "${lib.makeBinPath [bash coreutils]}" ''; extraLibraries = [ @@ -36,17 +41,17 @@ lib.overrideDerivation (mkDerivation rec { cryptonite data-dword deepseq directory filepath ghci-pretty lens lens-aeson memory monad-par mtl optparse-generic process QuickCheck quickcheck-text readline rosezipper scientific temporary text text-format - unordered-containers vector vty + unordered-containers vector vty restless-git ]; executableHaskellDepends = [ - readline zlib bzip2 + async readline zlib bzip2 ]; testHaskellDepends = [ base binary bytestring ghci-pretty here HUnit lens mtl QuickCheck tasty tasty-hunit tasty-quickcheck text vector ]; - homepage = https://github.com/dapphub/hsevm; + homepage = https://github.com/dapphub/hevm; description = "Ethereum virtual machine evaluator"; license = stdenv.lib.licenses.agpl3; maintainers = [stdenv.lib.maintainers.dbrock]; diff --git a/pkgs/applications/altcoins/zcash/default.nix b/pkgs/applications/altcoins/zcash/default.nix index 456ed41931cc..5eb4a3212462 100644 --- a/pkgs/applications/altcoins/zcash/default.nix +++ b/pkgs/applications/altcoins/zcash/default.nix @@ -9,13 +9,13 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "zcash" + (toString (optional (!withGui) "d")) + "-" + version; - version = "1.0.11"; + version = "1.0.12"; src = fetchFromGitHub { owner = "zcash"; repo = "zcash"; rev = "v${version}"; - sha256 = "09474jdhsg30maqrwfxigbw3llqi8axhh82lz3a23ii2gj68ni55"; + sha256 = "19bxhdnkvgncgl9x6nbaf5nwgrdfw99icvdbi9adfh646pd5z64s"; }; enableParallelBuilding = true; diff --git a/pkgs/applications/audio/ardour/default.nix b/pkgs/applications/audio/ardour/default.nix index a4debfe37440..850848abcde6 100644 --- a/pkgs/applications/audio/ardour/default.nix +++ b/pkgs/applications/audio/ardour/default.nix @@ -16,7 +16,7 @@ let # "git describe" when _not_ on an annotated tag(!): MAJOR.MINOR-REV-HASH. # Version to build. - tag = "5.11"; + tag = "5.12"; in @@ -25,12 +25,12 @@ stdenv.mkDerivation rec { src = fetchgit { url = "git://git.ardour.org/ardour/ardour.git"; - rev = "bd40b9132cbac2d2b79ba0ef480bd41d837f8f71"; - sha256 = "0xxxjg90jzj5cj364mlhk8srkgaghxif2jj1015bra25pffk41ay"; + rev = "ae0dcdc0c5d13483271065c360e378202d20170a"; + sha256 = "0mla5lm51ryikc2rrk53max2m7a5ds6i1ai921l2h95wrha45nkr"; }; buildInputs = - [ alsaLib aubio boost cairomm curl doxygen dbus fftw fftwSinglePrec flac + [ alsaLib aubio boost cairomm curl doxygen dbus fftw fftwSinglePrec flac glibmm graphviz gtkmm2 libjack2 libgnomecanvas libgnomecanvasmm liblo libmad libogg librdf librdf_raptor librdf_rasqal libsamplerate libsigcxx libsndfile libusb libuuid libxml2 libxslt lilv lv2 diff --git a/pkgs/applications/audio/axoloti/default.nix b/pkgs/applications/audio/axoloti/default.nix new file mode 100644 index 000000000000..986e476779cb --- /dev/null +++ b/pkgs/applications/audio/axoloti/default.nix @@ -0,0 +1,101 @@ +{ stdenv, fetchFromGitHub, fetchurl, makeWrapper, unzip +, gnumake, gcc-arm-embedded, dfu-util-axoloti, jdk, ant, libfaketime }: + +stdenv.mkDerivation rec { + version = "1.0.12-1"; + name = "axoloti-${version}"; + + src = fetchFromGitHub { + owner = "axoloti"; + repo = "axoloti"; + rev = "${version}"; + sha256 = "13njmv8zac0kaaxgkv4y4zfjcclafn9cw0m8lj2k4926wnwjmf50"; + }; + + chibi_version = "2.6.9"; + chibi_name = "ChibiOS_${chibi_version}"; + + chibios = fetchurl { + url = "mirror://sourceforge/project/chibios/ChibiOS_RT%20stable/Version%20${chibi_version}/${chibi_name}.zip"; + sha256 = "0lb5s8pkj80mqhsy47mmq0lqk34s2a2m3xagzihalvabwd0frhlj"; + }; + + buildInputs = [ makeWrapper unzip gcc-arm-embedded dfu-util-axoloti jdk ant libfaketime ]; + + patchPhase = '' + unzip ${chibios} + mv ${chibi_name} chibios + (cd chibios/ext; unzip -q -o fatfs-0.9-patched.zip) + + # Remove source of non-determinism in ChibiOS + substituteInPlace "chibios/os/various/shell.c" \ + --replace "#ifdef __DATE__" "#if 0" + + # Hardcode full path to compiler tools + for f in "firmware/Makefile.patch" \ + "firmware/Makefile" \ + "firmware/flasher/Makefile" \ + "firmware/mounter/Makefile"; do + substituteInPlace "$f" \ + --replace "arm-none-eabi-" "${gcc-arm-embedded}/bin/arm-none-eabi-" + done + + # Hardcode path to "make" + for f in "firmware/compile_firmware_linux.sh" \ + "firmware/compile_patch_linux.sh"; do + substituteInPlace "$f" \ + --replace "make" "${gnumake}/bin/make" + done + + # Hardcode dfu-util path + substituteInPlace "platform_linux/upload_fw_dfu.sh" \ + --replace "/bin/dfu-util" "" + substituteInPlace "platform_linux/upload_fw_dfu.sh" \ + --replace "./dfu-util" "${dfu-util-axoloti}/bin/dfu-util" + + # Fix build version + substituteInPlace "build.xml" \ + --replace "(git missing)" "${version}" + + # Remove build time + substituteInPlace "build.xml" \ + --replace "<tstamp>" "" + substituteInPlace "build.xml" \ + --replace \ + '<format property="build.time" pattern="dd/MM/yyyy HH:mm:ss z"/>' \ + '<property name="build.time" value=""/>' + substituteInPlace "build.xml" \ + --replace "</tstamp>" "" + substituteInPlace "build.xml" \ + --replace \ + '{line.separator}</echo>' \ + '{line.separator}</echo> <touch file="src/main/java/axoloti/Version.java" millis="0" />' + ''; + + buildPhase = '' + find . -exec touch -d '1970-01-01 00:00' {} \; + (cd platform_linux; sh compile_firmware.sh) + faketime "1970-01-01 00:00:00" ant -Dbuild.runtime=true + ''; + + installPhase = '' + mkdir -p $out/bin $out/share/axoloti + + cp -r doc firmware chibios platform_linux CMSIS *.txt $out/share/axoloti/ + install -vD dist/Axoloti.jar $out/share/axoloti/ + + makeWrapper ${jdk}/bin/java $out/bin/axoloti --add-flags "-Daxoloti_release=$out/share/axoloti -Daxoloti_runtime=$out/share/axoloti -jar $out/share/axoloti/Axoloti.jar" + ''; + + meta = with stdenv.lib; { + homepage = http://www.axoloti.com; + description = '' + Sketching embedded digital audio algorithms. + + To fix permissions of the Axoloti USB device node, add a similar udev rule to <literal>services.udev.extraRules</literal>: + <literal>SUBSYSTEM=="usb", ATTR{idVendor}=="16c0", ATTR{idProduct}=="0442", OWNER="someuser", GROUP="somegroup"</literal> + ''; + license = licenses.gpl3; + maintainers = with maintainers; [ TealG ]; + }; +} diff --git a/pkgs/applications/audio/axoloti/dfu-util.nix b/pkgs/applications/audio/axoloti/dfu-util.nix new file mode 100644 index 000000000000..2076e45de546 --- /dev/null +++ b/pkgs/applications/audio/axoloti/dfu-util.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchurl, pkgconfig, libusb1-axoloti }: + +stdenv.mkDerivation rec { + name="dfu-util-${version}"; + version = "0.8"; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ libusb1-axoloti ]; + + src = fetchurl { + url = "http://dfu-util.sourceforge.net/releases/${name}.tar.gz"; + sha256 = "0n7h08avlzin04j93m6hkq9id6hxjiiix7ff9gc2n89aw6dxxjsm"; + }; + + meta = with stdenv.lib; { + description = "Device firmware update (DFU) USB programmer"; + longDescription = '' + dfu-util is a program that implements the host (PC) side of the USB + DFU 1.0 and 1.1 (Universal Serial Bus Device Firmware Upgrade) protocol. + + DFU is intended to download and upload firmware to devices connected over + USB. It ranges from small devices like micro-controller boards up to mobile + phones. With dfu-util you are able to download firmware to your device or + upload firmware from it. + ''; + homepage = http://dfu-util.gnumonks.org/; + license = licenses.gpl2Plus; + platforms = platforms.unix; + maintainers = [ ]; + }; +} diff --git a/pkgs/applications/audio/axoloti/libusb1.nix b/pkgs/applications/audio/axoloti/libusb1.nix new file mode 100644 index 000000000000..cf71c006046e --- /dev/null +++ b/pkgs/applications/audio/axoloti/libusb1.nix @@ -0,0 +1,38 @@ +{ stdenv, fetchurl, pkgconfig, systemd ? null, libobjc, IOKit, fetchpatch }: + +stdenv.mkDerivation rec { + name = "libusb-1.0.19"; + + src = fetchurl { + url = "mirror://sourceforge/libusb/${name}.tar.bz2"; + sha256 = "0h38p9rxfpg9vkrbyb120i1diq57qcln82h5fr7hvy82c20jql3c"; + }; + + outputs = [ "out" "dev" ]; # get rid of propagating systemd closure + + buildInputs = [ pkgconfig ]; + propagatedBuildInputs = + stdenv.lib.optional stdenv.isLinux systemd ++ + stdenv.lib.optionals stdenv.isDarwin [ libobjc IOKit ]; + + patches = [ + (fetchpatch { + name = "libusb.stdfu.patch"; + url = "https://raw.githubusercontent.com/axoloti/axoloti/1.0.12/platform_linux/src/libusb.stdfu.patch"; + sha256 = "194j7j61i4q6x0ihm9ms8dxd4vliw20n2rj6cm9h17qzdl9xr33d"; + }) + ]; + + NIX_LDFLAGS = stdenv.lib.optionalString stdenv.isLinux "-lgcc_s"; + + preFixup = stdenv.lib.optionalString stdenv.isLinux '' + sed 's,-ludev,-L${systemd.lib}/lib -ludev,' -i $out/lib/libusb-1.0.la + ''; + + meta = { + homepage = http://www.libusb.info; + description = "User-space USB library"; + platforms = stdenv.lib.platforms.unix; + maintainers = [ ]; + }; +} diff --git a/pkgs/applications/audio/cantata/default.nix b/pkgs/applications/audio/cantata/default.nix index f09791d9aa1f..35fe510cbb2b 100644 --- a/pkgs/applications/audio/cantata/default.nix +++ b/pkgs/applications/audio/cantata/default.nix @@ -34,20 +34,21 @@ assert withOnlineServices -> withTaglib; assert withReplaygain -> withTaglib; let - version = "2.1.0"; + version = "2.2.0"; pname = "cantata"; fstat = x: fn: "-DENABLE_" + fn + "=" + (if x then "ON" else "OFF"); fstats = x: map (fstat x); -in -stdenv.mkDerivation rec { + withUdisks = (withTaglib && withDevices); + +in stdenv.mkDerivation rec { name = "${pname}-${version}"; src = fetchFromGitHub { owner = "CDrummond"; repo = "cantata"; rev = "v${version}"; - sha256 = "1mwc3cyrvg8qxjn70h4i6kdkvz85xspb3wi8wrb56jrhil409fkh"; + sha256 = "1b633chgfs8rya78bzzck5zijna15d1y4nmrz4dcjp862ks5y5q6"; }; buildInputs = [ vlc ] @@ -60,43 +61,37 @@ stdenv.mkDerivation rec { ++ stdenv.lib.optional withLame lame ++ stdenv.lib.optional withMtp libmtp ++ stdenv.lib.optional withMusicbrainz libmusicbrainz5 - ++ stdenv.lib.optional (withTaglib && withDevices) udisks2; + ++ stdenv.lib.optional withUdisks udisks2; nativeBuildInputs = [ cmake pkgconfig ]; enableParallelBuilding = true; cmakeFlags = stdenv.lib.flatten [ - (fstat withQt5 "QT5") - (fstats withTaglib [ "TAGLIB" "TAGLIB_EXTRAS" ]) - (fstats withReplaygain [ "FFMPEG" "MPG123" "SPEEXDSP" ]) - (fstat withCdda "CDPARANOIA") - (fstat withCddb "CDDB") - (fstat withLame "LAME") - (fstat withMtp "MTP") - (fstat withMusicbrainz "MUSICBRAINZ") + (fstat withQt5 "QT5") + (fstats withTaglib [ "TAGLIB" "TAGLIB_EXTRAS" ]) + (fstats withReplaygain [ "FFMPEG" "MPG123" "SPEEXDSP" ]) + (fstat withCdda "CDPARANOIA") + (fstat withCddb "CDDB") + (fstat withLame "LAME") + (fstat withMtp "MTP") + (fstat withMusicbrainz "MUSICBRAINZ") (fstat withOnlineServices "ONLINE_SERVICES") - (fstat withDynamic "DYNAMIC") - (fstat withDevices "DEVICES_SUPPORT") - (fstat withHttpServer "HTTP_SERVER") - (fstat withStreams "STREAMS") + (fstat withDynamic "DYNAMIC") + (fstat withDevices "DEVICES_SUPPORT") + (fstat withHttpServer "HTTP_SERVER") + (fstat withStreams "STREAMS") + (fstat withUdisks "UDISKS2") "-DENABLE_HTTPS_SUPPORT=ON" - "-DENABLE_UDISKS2=ON" ]; - # This is already fixed upstream but not released yet. Maybe in version 2. - preConfigure = '' - sed -i -e 's/STRLESS/VERSION_LESS/g' cmake/FindTaglib.cmake - ''; - meta = with stdenv.lib; { - homepage = https://github.com/cdrummond/cantata; + homepage = https://github.com/cdrummond/cantata; description = "A graphical client for MPD"; - license = licenses.gpl3; - + license = licenses.gpl3; + maintainers = with maintainers; [ fuuzetsu peterhoeg ]; # Technically Cantata can run on Windows so if someone wants to # bother figuring that one out, be my guest. - platforms = platforms.linux; - maintainers = with maintainers; [ fuuzetsu ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/audio/gnaural/default.nix b/pkgs/applications/audio/gnaural/default.nix index 2b78d1a4b6dd..d68a48da0902 100644 --- a/pkgs/applications/audio/gnaural/default.nix +++ b/pkgs/applications/audio/gnaural/default.nix @@ -13,5 +13,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2; maintainers = [ maintainers.ehmry ]; platforms = platforms.linux; + broken = true; }; } diff --git a/pkgs/applications/audio/mopidy-iris/default.nix b/pkgs/applications/audio/mopidy-iris/default.nix index 6e2312c33907..05d041380a09 100644 --- a/pkgs/applications/audio/mopidy-iris/default.nix +++ b/pkgs/applications/audio/mopidy-iris/default.nix @@ -2,12 +2,12 @@ pythonPackages.buildPythonApplication rec { name = "mopidy-iris-${version}"; - version = "3.4.1"; + version = "3.4.9"; src = pythonPackages.fetchPypi { inherit version; pname = "Mopidy-Iris"; - sha256 = "04fjj2n5v53ykxnjgna1y8bvk7g3x0yiqisvzrdva693lfz9cbgx"; + sha256 = "0acr8ss5d0jgcy1qsjb12h0n6kr6qdp9zrbbk9vv3m3s6kcm8vgb"; }; propagatedBuildInputs = [ @@ -16,6 +16,7 @@ pythonPackages.buildPythonApplication rec { pythonPackages.configobj pythonPackages.pylast pythonPackages.spotipy + pythonPackages.raven ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/audio/mpc/default.nix b/pkgs/applications/audio/mpc/default.nix index 59adb7cde497..73352b650921 100644 --- a/pkgs/applications/audio/mpc/default.nix +++ b/pkgs/applications/audio/mpc/default.nix @@ -17,11 +17,6 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - preConfigure = '' - export LIBMPDCLIENT_LIBS=${mpd_clientlib}/lib/libmpdclient.${if stdenv.isDarwin then mpd_clientlib.majorVersion + ".dylib" else "so." + mpd_clientlib.majorVersion + ".0." + mpd_clientlib.minorVersion} - export LIBMPDCLIENT_CFLAGS=${mpd_clientlib} - ''; - meta = with stdenv.lib; { description = "A minimalist command line interface to MPD"; homepage = http://www.musicpd.org/clients/mpc/; diff --git a/pkgs/applications/audio/mpg123/default.nix b/pkgs/applications/audio/mpg123/default.nix index 37717babce4a..1e0b46826cf0 100644 --- a/pkgs/applications/audio/mpg123/default.nix +++ b/pkgs/applications/audio/mpg123/default.nix @@ -4,11 +4,11 @@ }: stdenv.mkDerivation rec { - name = "mpg123-1.25.4"; + name = "mpg123-1.25.7"; src = fetchurl { url = "mirror://sourceforge/mpg123/${name}.tar.bz2"; - sha256 = "1rxknrnl3ji5hi5rbckpzhbl1k5r8i53kcys4xdgg0xbi8765dfd"; + sha256 = "1ws40fglyyk51jvmz8gfapjkw1g51pkch1rffdsbh4b1yay5xc9i"; }; buildInputs = stdenv.lib.optional (!stdenv.isDarwin) alsaLib; diff --git a/pkgs/applications/audio/ncmpc/default.nix b/pkgs/applications/audio/ncmpc/default.nix index e43120a715d6..ef0bb75b2ec0 100644 --- a/pkgs/applications/audio/ncmpc/default.nix +++ b/pkgs/applications/audio/ncmpc/default.nix @@ -1,36 +1,35 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, glib, ncurses, mpd_clientlib, libintlOrEmpty }: +{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, glib, ncurses +, mpd_clientlib, gettext }: -stdenv.mkDerivation rec { +let + rpath = stdenv.lib.makeLibraryPath [ + glib ncurses mpd_clientlib + ]; +in stdenv.mkDerivation rec { name = "ncmpc-${version}"; - version = "0.27"; + version = "0.28"; src = fetchFromGitHub { owner = "MusicPlayerDaemon"; repo = "ncmpc"; rev = "v${version}"; - sha256 = "0sfal3wadqvy6yas4xzhw35awdylikci8kbdcmgm4l2afpmc1lrr"; + sha256 = "1z0bdkqsdb3f5k2lsws3qzav4r30fzk8fhxj9l0p738flcka6k4n"; }; buildInputs = [ glib ncurses mpd_clientlib ]; - # ++ libintlOrEmpty; - nativeBuildInputs = [ autoreconfHook pkgconfig ]; - - NIX_LDFLAGS = stdenv.lib.optionalString stdenv.isDarwin "-lintl"; + nativeBuildInputs = [ meson ninja pkgconfig gettext ]; - # without this, po/Makefile.in.in is not being created - preAutoreconf = '' - ./autogen.sh + postFixup = '' + for elf in "$out"/bin/*; do + patchelf --set-rpath '${rpath}':"$out/lib" "$elf" + done ''; - configureFlags = [ - "--enable-colors" - "--enable-lyrics-screen" - ]; - meta = with stdenv.lib; { description = "Curses-based interface for MPD (music player daemon)"; homepage = http://www.musicpd.org/clients/ncmpc/; license = licenses.gpl2Plus; platforms = platforms.all; + maintainers = with maintainers; [ fpletz ]; }; } diff --git a/pkgs/applications/audio/rosegarden/default.nix b/pkgs/applications/audio/rosegarden/default.nix index 4fec0d0c37b4..5966d4253f51 100644 --- a/pkgs/applications/audio/rosegarden/default.nix +++ b/pkgs/applications/audio/rosegarden/default.nix @@ -1,23 +1,35 @@ -{ stdenv, fetchurl, cmake, qt4, pkgconfig, ladspaPlugins, ladspaH, - dssi, liblo, liblrdf, fftwSinglePrec, libsndfile, - libsamplerate, perl, makedepend, libjack2, - withLirc ? false, lirc ? null } : +{ stdenv, fetchurl, cmake, makedepend, perl, pkgconfig, qttools +, dssi, fftwSinglePrec, ladspaH, ladspaPlugins, libjack2 +, liblo, liblrdf, libsamplerate, libsndfile, lirc ? null, qtbase }: stdenv.mkDerivation (rec { version = "17.04"; name = "rosegarden-${version}"; src = fetchurl { - url = "mirror://sourceforge/rosegarden/${name}.tar.bz2"; + url = "mirror://sourceforge/rosegarden/${name}.tar.bz2"; sha256 = "1khfcj22asdhjh0jvhkqsz200wgmigkhsrcz09ffia5hqm0n32lq"; }; - QTDIR = qt4; + patchPhase = '' + substituteInPlace src/CMakeLists.txt --replace svnheader svnversion + ''; + + nativeBuildInputs = [ cmake makedepend perl pkgconfig qttools ]; buildInputs = [ - cmake qt4 pkgconfig ladspaPlugins ladspaH dssi liblo liblrdf fftwSinglePrec - libsndfile libsamplerate perl makedepend libjack2 - ] ++ stdenv.lib.optional withLirc [ lirc ]; + dssi + fftwSinglePrec + ladspaH + ladspaPlugins + libjack2 + liblo + liblrdf + libsamplerate + libsndfile + lirc + qtbase + ]; enableParallelBuilding = true; @@ -25,11 +37,15 @@ stdenv.mkDerivation (rec { homepage = http://www.rosegardenmusic.com/; description = "Music composition and editing environment"; longDescription = '' - Rosegarden is a music composition and editing environment based around a MIDI sequencer that features a rich understanding of music notation and includes basic support for digital audio. - Rosegarden is an easy-to-learn, attractive application that runs on Linux, ideal for composers, musicians, music students, and small studio or home recording environments. - ''; + Rosegarden is a music composition and editing environment based around + a MIDI sequencer that features a rich understanding of music notation + and includes basic support for digital audio. - maintainers = [ maintainers.lebastr ]; + Rosegarden is an easy-to-learn, attractive application that runs on Linux, + ideal for composers, musicians, music students, and small studio or home + recording environments. + ''; + maintainers = with maintainers; [ lebastr ]; license = licenses.lgpl2Plus; platforms = platforms.linux; }; diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix index ad0f7ee14c5a..249bbe0d8fb7 100644 --- a/pkgs/applications/audio/spotify/default.nix +++ b/pkgs/applications/audio/spotify/default.nix @@ -9,7 +9,7 @@ let # Latest version number can be found at: # http://repository-origin.spotify.com/pool/non-free/s/spotify-client/ # Be careful not to pick the testing version. - version = "1.0.49.125.g72ee7853-111"; + version = "1.0.64.407.g9bd02c2d-26"; deps = [ alsaLib @@ -54,7 +54,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://repository-origin.spotify.com/pool/non-free/s/spotify-client/spotify-client_${version}_amd64.deb"; - sha256 = "0l008x06d257vcw6gq3q90hvv93cq6mxpj11by1np6bzzg61qv8x"; + sha256 = "0zc8vclf1wx60yllc1jgzhqyv5lkwz95qmmy5f79zkj6vrdak5wc"; }; buildInputs = [ dpkg makeWrapper ]; diff --git a/pkgs/applications/audio/streamripper/default.nix b/pkgs/applications/audio/streamripper/default.nix index 2df1e1e3b3b5..47d9381b2def 100644 --- a/pkgs/applications/audio/streamripper/default.nix +++ b/pkgs/applications/audio/streamripper/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { homepage = http://streamripper.sourceforge.net/; description = "Application that lets you record streaming mp3 to your hard drive"; license = licenses.gpl2; - platforms = platforms.unix; + platforms = platforms.linux; maintainers = with maintainers; [ the-kenny ]; }; } diff --git a/pkgs/applications/backup/deja-dup/default.nix b/pkgs/applications/backup/deja-dup/default.nix new file mode 100644 index 000000000000..4d3a9a385d64 --- /dev/null +++ b/pkgs/applications/backup/deja-dup/default.nix @@ -0,0 +1,83 @@ +{ stdenv, fetchurl, meson, ninja, pkgconfig, vala_0_38, gettext +, gnome3, libnotify, intltool, itstool, glib, gtk3, libxml2 +, coreutils, libsecret, pcre, libxkbcommon, wrapGAppsHook +, libpthreadstubs, libXdmcp, epoxy, at_spi2_core, dbus, libgpgerror +, appstream-glib, desktop_file_utils, atk, pango, duplicity +}: + +stdenv.mkDerivation rec { + name = "deja-dup-${version}"; + version = "36.1"; + + src = fetchurl { + url = "https://launchpad.net/deja-dup/36/${version}/+download/deja-dup-${version}.tar.xz"; + sha256 = "1s48k2sxrpwkzp37s4x7934lyg5194c47nv9ks15rksd5s0alnld"; + }; + + patches = [ + ./fix-paths.patch + ]; + + postPatch = '' + substituteInPlace libdeja/tools/duplicity/DuplicityInstance.vala --replace \ + "/bin/rm" \ + "${coreutils}/bin/rm" + ''; + + # couldn't find gio/gdesktopappinfo.h + NIX_CFLAGS_COMPILE = "-I${glib.dev}/include/gio-unix-2.0"; + + nativeBuildInputs = [ + meson ninja pkgconfig vala_0_38 gettext intltool itstool + appstream-glib desktop_file_utils libxml2 wrapGAppsHook + ]; + + buildInputs = [ + libnotify gnome3.libpeas glib gtk3 libsecret + pcre libxkbcommon libpthreadstubs libXdmcp epoxy gnome3.nautilus + at_spi2_core dbus gnome3.gnome_online_accounts libgpgerror + ]; + + propagatedUserEnvPkgs = [ duplicity ]; + + postInstall = '' + glib-compile-schemas $out/share/glib-2.0/schemas + ''; + + # Manual rpath definition until https://github.com/mesonbuild/meson/issues/314 is fixed + postFixup = + let + rpath = stdenv.lib.makeLibraryPath [ + glib + gtk3 + gnome3.gnome_online_accounts + gnome3.libpeas + gnome3.nautilus + libgpgerror + libsecret + # Transitive + atk + pango + ]; + in '' + # Unwrap accidentally wrapped library + mv $out/libexec/deja-dup/tools/.libduplicity.so-wrapped $out/libexec/deja-dup/tools/libduplicity.so + + for elf in "$out"/bin/.*-wrapped "$out"/libexec/deja-dup/.deja-dup-monitor-wrapped "$out"/libexec/deja-dup/tools/*.so "$out"/lib/deja-dup/*.so "$out"/lib/nautilus/extensions-3.0/*.so; do + patchelf --set-rpath '${rpath}':"$out/lib/deja-dup" "$elf" + done + ''; + + meta = with stdenv.lib; { + description = "A simple backup tool"; + longDescription = '' + Déjà Dup is a simple backup tool. It hides the complexity \ + of backing up the Right Way (encrypted, off-site, and regular) \ + and uses duplicity as the backend. + ''; + homepage = https://launchpad.net/deja-dup; + license = with licenses; gpl3; + maintainers = with maintainers; [ jtojnar ]; + platforms = with platforms; linux; + }; +} diff --git a/pkgs/applications/backup/deja-dup/fix-paths.patch b/pkgs/applications/backup/deja-dup/fix-paths.patch new file mode 100644 index 000000000000..1cc57e6a54a2 --- /dev/null +++ b/pkgs/applications/backup/deja-dup/fix-paths.patch @@ -0,0 +1,12 @@ +diff --git a/deja-dup/nautilus/meson.build b/deja-dup/nautilus/meson.build +index 04b136f3..ed8f7cba 100644 +--- a/deja-dup/nautilus/meson.build ++++ b/deja-dup/nautilus/meson.build +@@ -31,6 +31,6 @@ shared_module('deja-dup', ['NautilusExtension.c'], + link_with: [dirhandling], + dependencies: [nautilus_dep], + install: true, +- install_dir: nautilus_dep.get_pkgconfig_variable('extensiondir')) ++ install_dir: join_paths(get_option('libdir'), 'nautilus', 'extensions-3.0')) + + endif diff --git a/pkgs/applications/editors/android-studio/packages.nix b/pkgs/applications/editors/android-studio/packages.nix index 6d7ed2e489b6..8ee5f0319aa1 100644 --- a/pkgs/applications/editors/android-studio/packages.nix +++ b/pkgs/applications/editors/android-studio/packages.nix @@ -27,9 +27,9 @@ in rec { preview = mkStudio rec { pname = "android-studio-preview"; - version = "3.0.0.14"; # "Android Studio 3.0 Beta 6" - build = "171.4333198"; - sha256Hash = "071a3j0bnsspvhvhh10h9ygay3bi66glriiy8gl8vrwx1dnv55zk"; + version = "3.0.0.15"; # "Android Studio 3.0 Beta 7" + build = "171.4365657"; + sha256Hash = "0am3rq0ag982ik95mpcxvx2zlv0h4l6747b29mlsbqih66868db6"; meta = stable.meta // { description = "The Official IDE for Android (preview version)"; diff --git a/pkgs/applications/editors/aseprite/default.nix b/pkgs/applications/editors/aseprite/default.nix index 9a0d1bb5e72c..39be7f534060 100644 --- a/pkgs/applications/editors/aseprite/default.nix +++ b/pkgs/applications/editors/aseprite/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { name = "aseprite-${version}"; - version = if unfree then "1.2-beta12" else "1.1.7"; + version = if unfree then "1.2.2" else "1.1.7"; src = fetchFromGitHub { owner = "aseprite"; @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { rev = "v${version}"; fetchSubmodules = true; sha256 = if unfree - then "1zgsr03d4vwdj2qyiwfwfqsbqngp85n13i3xwbkfkbja036c5yhc" + then "1ldi7zikl1g6rq3g9lkypx5wqzza5j0054j1r8bh7lyvb0szicig" else "0gd49lns2bpzbkwax5jf9x1xmg1j8ij997kcxr2596cwiswnw4di"; }; @@ -30,6 +30,10 @@ stdenv.mkDerivation rec { libX11 libXext libXcursor libXxf86vm ] ++ lib.optionals unfree [ cmark ]; + postPatch = '' + sed -i src/config.h -e "s-\\(#define VERSION\\) .*-\\1 \"$version\"-" + ''; + cmakeFlags = [ "-DENABLE_UPDATER=OFF" "-DUSE_SHARED_CURL=ON" diff --git a/pkgs/applications/editors/atom/default.nix b/pkgs/applications/editors/atom/default.nix index 65df31aaa226..8c77687d8758 100644 --- a/pkgs/applications/editors/atom/default.nix +++ b/pkgs/applications/editors/atom/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "atom-${version}"; - version = "1.20.0"; + version = "1.20.1"; src = fetchurl { url = "https://github.com/atom/atom/releases/download/v${version}/atom-amd64.deb"; - sha256 = "1jzpa44ny78djdxc8d2w4jz1m68xmi8bzq87q3wmdffa4g9z4aa0"; + sha256 = "0mr82m3yv18ljai3r4ncr65bqhjwxyf1si77iza4ijk5zv1llp7i"; name = "${name}.deb"; }; diff --git a/pkgs/applications/editors/eclipse/plugins.nix b/pkgs/applications/editors/eclipse/plugins.nix index a3b4193edc6f..b9b0ee61c0b0 100644 --- a/pkgs/applications/editors/eclipse/plugins.nix +++ b/pkgs/applications/editors/eclipse/plugins.nix @@ -447,6 +447,28 @@ rec { }; }; + vrapper = buildEclipseUpdateSite rec { + name = "vrapper-${version}"; + version = "0.72.0"; + owner = "vrapper"; + repo = "vrapper"; + date = "20170311"; + + src = fetchzip { + stripRoot = false; + url = "https://github.com/${owner}/${repo}/releases/download/${version}/vrapper_${version}_${date}.zip"; + sha256 = "0nyirf6km97q211cxfy01kidxac20m8ba3kk9xj73ykrhsk3cxjp"; + }; + + meta = with stdenv.lib; { + homepage = "https://github.com/vrapper/vrapper"; + description = "A wrapper to provide a Vim-like input scheme for moving around and editing text"; + license = licenses.gpl3; + platforms = platforms.all; + maintainers = [ maintainers.stumoss ]; + }; + }; + yedit = buildEclipsePlugin rec { name = "yedit-${version}"; version = "1.0.20.201509041456"; diff --git a/pkgs/applications/editors/emacs-modes/melpa-generated.nix b/pkgs/applications/editors/emacs-modes/melpa-generated.nix index b0449cc7c424..ce9c4b3a46fd 100644 --- a/pkgs/applications/editors/emacs-modes/melpa-generated.nix +++ b/pkgs/applications/editors/emacs-modes/melpa-generated.nix @@ -10171,6 +10171,27 @@ license = lib.licenses.free; }; }) {}; + company-lean = callPackage ({ company, dash, dash-functional, emacs, f, fetchFromGitHub, fetchurl, lean-mode, lib, melpaBuild, s }: + melpaBuild { + pname = "company-lean"; + version = "20170920.708"; + src = fetchFromGitHub { + owner = "leanprover"; + repo = "lean-mode"; + rev = "fa75bf97442a42e76e77fcf1b3c64e58f4f4169a"; + sha256 = "1qyg0yjfmpnj8y3bbip3mvlhmh0ccm0j0p3crmb3az84fycvrsnr"; + }; + recipeFile = fetchurl { + url = "https://raw.githubusercontent.com/milkypostman/melpa/42f4d6438c8aeb94ebc1782f2f5e2abd17f0ffde/recipes/company-lean"; + sha256 = "1hqkn7w5dyznf7i3r3132q8x31r74q188jsm5kdrjqgbwak2p91a"; + name = "company-lean"; + }; + packageRequires = [ company dash dash-functional emacs f lean-mode s ]; + meta = { + homepage = "https://melpa.org/#/company-lean"; + license = lib.licenses.free; + }; + }) {}; company-lua = callPackage ({ company, f, fetchFromGitHub, fetchurl, lib, lua-mode, melpaBuild, s }: melpaBuild { pname = "company-lua"; @@ -32722,6 +32743,27 @@ license = lib.licenses.free; }; }) {}; + helm-lean = callPackage ({ dash, emacs, fetchFromGitHub, fetchurl, helm, lean-mode, lib, melpaBuild }: + melpaBuild { + pname = "helm-lean"; + version = "20170919.934"; + src = fetchFromGitHub { + owner = "leanprover"; + repo = "lean-mode"; + rev = "fa75bf97442a42e76e77fcf1b3c64e58f4f4169a"; + sha256 = "1qyg0yjfmpnj8y3bbip3mvlhmh0ccm0j0p3crmb3az84fycvrsnr"; + }; + recipeFile = fetchurl { + url = "https://raw.githubusercontent.com/milkypostman/melpa/42f4d6438c8aeb94ebc1782f2f5e2abd17f0ffde/recipes/helm-lean"; + sha256 = "0j5ax14lhlyd9mpqk1jwh7nfp090kj71r045v2qjfaw2fa23b7si"; + name = "helm-lean"; + }; + packageRequires = [ dash emacs helm lean-mode ]; + meta = { + homepage = "https://melpa.org/#/helm-lean"; + license = lib.licenses.free; + }; + }) {}; helm-lobsters = callPackage ({ cl-lib ? null, fetchFromGitHub, fetchurl, helm, lib, melpaBuild }: melpaBuild { pname = "helm-lobsters"; @@ -41631,6 +41673,27 @@ license = lib.licenses.free; }; }) {}; + lean-mode = callPackage ({ dash, dash-functional, emacs, f, fetchFromGitHub, fetchurl, flycheck, lib, melpaBuild, s }: + melpaBuild { + pname = "lean-mode"; + version = "20170920.755"; + src = fetchFromGitHub { + owner = "leanprover"; + repo = "lean-mode"; + rev = "fa75bf97442a42e76e77fcf1b3c64e58f4f4169a"; + sha256 = "1qyg0yjfmpnj8y3bbip3mvlhmh0ccm0j0p3crmb3az84fycvrsnr"; + }; + recipeFile = fetchurl { + url = "https://raw.githubusercontent.com/milkypostman/melpa/42f4d6438c8aeb94ebc1782f2f5e2abd17f0ffde/recipes/lean-mode"; + sha256 = "0rdraxsirkrzbinjwg4qam15iy3qiixqgwsckngzw8d9a4s9l6sj"; + name = "lean-mode"; + }; + packageRequires = [ dash dash-functional emacs f flycheck s ]; + meta = { + homepage = "https://melpa.org/#/lean-mode"; + license = lib.licenses.free; + }; + }) {}; leanote = callPackage ({ async, cl-lib ? null, emacs, fetchFromGitHub, fetchurl, let-alist, lib, melpaBuild, pcache, request, s }: melpaBuild { pname = "leanote"; diff --git a/pkgs/applications/editors/focuswriter/default.nix b/pkgs/applications/editors/focuswriter/default.nix index 28106cf876bd..10816e0a283f 100644 --- a/pkgs/applications/editors/focuswriter/default.nix +++ b/pkgs/applications/editors/focuswriter/default.nix @@ -1,25 +1,27 @@ -{ stdenv, fetchurl, qt4, qmake4Hook, pkgconfig, hunspell }: +{ stdenv, fetchurl, pkgconfig, qmake, qttools, hunspell, qtbase, qtmultimedia }: stdenv.mkDerivation rec { name = "focuswriter-${version}"; - version = "1.5.3"; + version = "1.6.7"; src = fetchurl { - url = http://gottcode.org/focuswriter/focuswriter-1.5.3-src.tar.bz2; - sha256 = "1i58jxbiy95ijf81g8c3gwxhcg3irzssna3wv7vhrd57g4lcfj0w"; + url = "https://gottcode.org/focuswriter/focuswriter-${version}-src.tar.bz2"; + sha256 = "10rqzinr6yd6ca06rklg34kdc08a3xgygfzmprsfg7gdsybfay5z"; }; - buildInputs = [ qt4 qmake4Hook pkgconfig hunspell ]; - - qmakeFlags = [ "PREFIX=/" ]; + nativeBuildInputs = [ pkgconfig qmake qttools ]; + buildInputs = [ hunspell qtbase qtmultimedia ]; + + enableParallelBuilding = true; + qmakeFlags = [ "PREFIX=/" ]; installFlags = [ "INSTALL_ROOT=$(out)" ]; - meta = { + meta = with stdenv.lib; { description = "Simple, distraction-free writing environment"; - license = stdenv.lib.licenses.gpl2; - maintainers = [ stdenv.lib.maintainers.madjar ]; - platforms = stdenv.lib.platforms.all; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ madjar ]; + platforms = platforms.all; homepage = https://gottcode.org/focuswriter/; }; } diff --git a/pkgs/applications/editors/vim/common.nix b/pkgs/applications/editors/vim/common.nix index 1d661014c772..18e1df4575da 100644 --- a/pkgs/applications/editors/vim/common.nix +++ b/pkgs/applications/editors/vim/common.nix @@ -1,12 +1,12 @@ { lib, fetchFromGitHub }: rec { - version = "8.0.0442"; + version = "8.0.1150"; src = fetchFromGitHub { owner = "vim"; repo = "vim"; rev = "v${version}"; - sha256 = "1pyyrkb7k5vhm1ijrh4v2f50lxhrgga5mm0gvmz4v704z0h585yg"; + sha256 = "1k1qkmb2jbymqikrp99q1yjagdf508xzabrw7b08dlh926b2v23j"; }; enableParallelBuilding = true; diff --git a/pkgs/applications/gis/grass/default.nix b/pkgs/applications/gis/grass/default.nix index 790997e328b4..5e4e838f3452 100644 --- a/pkgs/applications/gis/grass/default.nix +++ b/pkgs/applications/gis/grass/default.nix @@ -71,5 +71,6 @@ stdenv.mkDerivation { description = "GIS software suite used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization"; license = stdenv.lib.licenses.gpl2Plus; platforms = stdenv.lib.platforms.all; + broken = true; }; } diff --git a/pkgs/applications/graphics/ImageMagick/7.0.nix b/pkgs/applications/graphics/ImageMagick/7.0.nix index cd99861ea7b6..a70a67d548f5 100644 --- a/pkgs/applications/graphics/ImageMagick/7.0.nix +++ b/pkgs/applications/graphics/ImageMagick/7.0.nix @@ -14,8 +14,8 @@ let else throw "ImageMagick is not supported on this platform."; cfg = { - version = "7.0.6-4"; - sha256 = "0fvkx9lf8g0sa9bccd9s5qyhcy0g1mqnkbpqly55ryxyg1ywxqaz"; + version = "7.0.7-4"; + sha256 = "074w4jm5s98b8dxwjl8lljvdhmm3mbg1ikgjy1mw3c1sb08z3nc8"; patches = []; }; in diff --git a/pkgs/applications/graphics/ImageMagick/default.nix b/pkgs/applications/graphics/ImageMagick/default.nix index 1cf08f286ef3..d01bfa1d9507 100644 --- a/pkgs/applications/graphics/ImageMagick/default.nix +++ b/pkgs/applications/graphics/ImageMagick/default.nix @@ -14,8 +14,8 @@ let else throw "ImageMagick is not supported on this platform."; cfg = { - version = "6.9.9-7"; - sha256 = "1lwsz9b8clygdppgawv2hsry4aykgmawjlwhg3fj70rndv4a8rw4"; + version = "6.9.9-15"; + sha256 = "0bxgdc1qiyvag6a2iiqcbwp4ak0m1mzi9qhs51fbrvv6syy12m6c"; patches = []; } # Freeze version on mingw so we don't need to port the patch too often. diff --git a/pkgs/applications/graphics/gcolor3/default.nix b/pkgs/applications/graphics/gcolor3/default.nix new file mode 100644 index 000000000000..afad1e6c3af0 --- /dev/null +++ b/pkgs/applications/graphics/gcolor3/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchFromGitHub, gnome3, libtool, intltool, pkgconfig, gtk3, hicolor_icon_theme, wrapGAppsHook } : + +let + version = "2.2"; +in stdenv.mkDerivation { + name = "gcolor3-${version}"; + + src = fetchFromGitHub { + owner = "hjdskes"; + repo = "gcolor3"; + rev = "v${version}"; + sha256 = "1rbahsi33pfggpj5cigy6wy5333g3rpm8v2q0b35c6m7pwhmf2gr"; + }; + + nativeBuildInputs = [ gnome3.gnome_common libtool intltool pkgconfig hicolor_icon_theme wrapGAppsHook ]; + + buildInputs = [ gtk3 ]; + + configureScript = "./autogen.sh"; + + # clang-4.0: error: argument unused during compilation: '-pthread' + NIX_CFLAGS_COMPILE = stdenv.lib.optional stdenv.cc.isClang "-Wno-error=unused-command-line-argument"; + + meta = { + description = "A simple color chooser written in GTK3"; + homepage = https://hjdskes.github.io/projects/gcolor3/; + license = stdenv.lib.licenses.gpl2; + maintainers = with stdenv.lib.maintainers; [ jtojnar ]; + platforms = stdenv.lib.platforms.unix; + }; +} diff --git a/pkgs/applications/graphics/kgraphviewer/default.nix b/pkgs/applications/graphics/kgraphviewer/default.nix index 6c2be6ea73c8..8f043816ba06 100644 --- a/pkgs/applications/graphics/kgraphviewer/default.nix +++ b/pkgs/applications/graphics/kgraphviewer/default.nix @@ -1,24 +1,38 @@ -{ stdenv, fetchurl, automoc4, cmake, gettext, perl, pkgconfig -, kdelibs4, boost, graphviz +{ stdenv, mkDerivation, fetchurl, cmake, extra-cmake-modules, pkgconfig, wrapGAppsHook +, kconfig, kcrash, kinit, kdoctools, kiconthemes, kio, kparts, kwidgetsaddons +, qtbase, qtsvg +, boost, graphviz }: -stdenv.mkDerivation rec { +mkDerivation rec { name = "kgraphviewer-${version}"; - version = "2.2.0"; + version = "2.4.2"; src = fetchurl { - url = "mirror://kde/stable/kgraphviewer/${version}/src/${name}.tar.xz"; - sha256 = "1vs5x539mx26xqdljwzkh2bj7s3ydw4cb1wm9nlhgs18siw4gjl5"; + url = "mirror://kde/stable/kgraphviewer/${version}/${name}.tar.xz"; + sha256 = "1jc5zfgy4narwgn7rscfwz7l5pjy0jghal6yb3kd4sfadi78nhs9"; }; - buildInputs = [ kdelibs4 boost graphviz ]; - nativeBuildInputs = [ automoc4 cmake gettext perl pkgconfig ]; + buildInputs = [ + qtbase qtsvg + boost graphviz + ]; + + nativeBuildInputs = [ + cmake extra-cmake-modules pkgconfig wrapGAppsHook + kdoctools + ]; + + propagatedBuildInputs = [ + kconfig kinit kio kparts kwidgetsaddons + ]; + + enableParallelBuilding = true; meta = with stdenv.lib; { description = "A Graphviz dot graph viewer for KDE"; - license = licenses.gpl2; - platforms = platforms.linux; - maintainers = [ maintainers.lethalman ]; + license = licenses.gpl2; + maintainers = with maintainers; [ lethalman ]; + platforms = platforms.linux; }; } - diff --git a/pkgs/applications/graphics/meshlab/default.nix b/pkgs/applications/graphics/meshlab/default.nix index 07789fce3a92..d73697673bfe 100644 --- a/pkgs/applications/graphics/meshlab/default.nix +++ b/pkgs/applications/graphics/meshlab/default.nix @@ -46,6 +46,6 @@ stdenv.mkDerivation rec { license = stdenv.lib.licenses.gpl2Plus; maintainers = with stdenv.lib.maintainers; [viric]; platforms = with stdenv.lib.platforms; linux; - broken = stdenv.isLinux && stdenv.isi686; + broken = true; }; } diff --git a/pkgs/applications/graphics/sane/backends/brscan4/default.nix b/pkgs/applications/graphics/sane/backends/brscan4/default.nix index 7037e944f3f9..42d129e53887 100644 --- a/pkgs/applications/graphics/sane/backends/brscan4/default.nix +++ b/pkgs/applications/graphics/sane/backends/brscan4/default.nix @@ -10,17 +10,17 @@ let udevRules = callPackage ./udev_rules_type1.nix {}; in stdenv.mkDerivation rec { - name = "brscan4-0.4.4-2"; + name = "brscan4-0.4.4-4"; src = if stdenv.system == "i686-linux" then fetchurl { url = "http://download.brother.com/welcome/dlf006646/${name}.i386.deb"; - sha256 = "1rd6qmg49lvack8rg9kkqs3vxfvvqf2x45h93pkrhk8a4aj5c8ll"; + sha256 = "13mhjbzf9nvpdzrc2s98684r7likg76zxs1wlz2h8w59fsqgx4k2"; } else if stdenv.system == "x86_64-linux" then fetchurl { url = "http://download.brother.com/welcome/dlf006645/${name}.amd64.deb"; - sha256 = "1r3cq1k2a2bghibkckmk00x7y59ic31gv7jcsw7380szf1j3la59"; + sha256 = "0xy5px96y1saq9l80vwvfn6anr2q42qlxdhm6ci2a0diwib5q9fd"; } else throw "${name} is not supported on ${stdenv.system} (only i686-linux and x86_64 linux are supported)"; diff --git a/pkgs/applications/graphics/synfigstudio/default.nix b/pkgs/applications/graphics/synfigstudio/default.nix index ea0d2338252a..e34de18e3283 100644 --- a/pkgs/applications/graphics/synfigstudio/default.nix +++ b/pkgs/applications/graphics/synfigstudio/default.nix @@ -42,6 +42,8 @@ let ETL boost cairo gettext glibmm mlt-qt5 libsigcxx libxmlxx pango pkgconfig autoreconfHook ]; + + meta.broken = true; }; in stdenv.mkDerivation rec { diff --git a/pkgs/applications/graphics/xzgv/default.nix b/pkgs/applications/graphics/xzgv/default.nix index 999314429452..a15ffee3d4a8 100644 --- a/pkgs/applications/graphics/xzgv/default.nix +++ b/pkgs/applications/graphics/xzgv/default.nix @@ -1,22 +1,23 @@ -{ stdenv, fetchurl, gtk2, pkgconfig, texinfo }: +{ stdenv, fetchurl, gtk2, libexif, pkgconfig, texinfo }: stdenv.mkDerivation rec { name = "xzgv-${version}"; - version = "0.9.1"; + version = "0.9.2"; src = fetchurl { url = "mirror://sourceforge/xzgv/xzgv-${version}.tar.gz"; - sha256 = "1rh432wnvzs434knzbda0fslhfx0gngryrrnqkfm6gwd2g5mxcph"; + sha256 = "17l1xr9v07ggwga3vn0z1i4lnwjrr20rr8z1kjbw71aaijxl18i5"; }; - buildInputs = [ gtk2 pkgconfig texinfo ]; - patches = [ ./fix-linker-paths.patch ]; + nativeBuildInputs = [ pkgconfig texinfo ]; + buildInputs = [ gtk2 libexif ]; postPatch = '' substituteInPlace config.mk \ --replace /usr/local $out - substituteInPlace config.mk \ - --replace "CFLAGS=-O2 -Wall" "CFLAGS=-Wall" substituteInPlace Makefile \ --replace "all: src man" "all: src man info" ''; + preInstall = '' + mkdir -p $out/share/{app-install/desktop,applications,info,pixmaps} + ''; meta = with stdenv.lib; { homepage = http://sourceforge.net/projects/xzgv/; description = "Picture viewer for X with a thumbnail-based selector"; diff --git a/pkgs/applications/graphics/xzgv/fix-linker-paths.patch b/pkgs/applications/graphics/xzgv/fix-linker-paths.patch deleted file mode 100644 index c5b1ae0879b5..000000000000 --- a/pkgs/applications/graphics/xzgv/fix-linker-paths.patch +++ /dev/null @@ -1,25 +0,0 @@ -taken from http://sourceforge.net/p/xzgv/code/53/tree//trunk/xzgv/src/Makefile?diff=514dada434309d2ec11f5eff:52 ---- a/src/Makefile -+++ b/src/Makefile -@@ -9,8 +9,10 @@ - # This gets definitions for CC, CFLAGS, BINDIR etc. - include ../config.mk - --CFLAGS+=`pkg-config --cflags gtk+-2.0` `pkg-config --cflags gdk-pixbuf-2.0` --LDFLAGS+=`pkg-config --libs gtk+-2.0` `pkg-config --libs gdk-pixbuf-2.0` -+CFLAGS+=`pkg-config --cflags gtk+-2.0` `pkg-config --cflags gdk-pixbuf-2.0` \ -+ `pkg-config --cflags x11` -+LDFLAGS+=`pkg-config --libs gtk+-2.0` `pkg-config --libs gdk-pixbuf-2.0` \ -+ `pkg-config --libs x11` -lm - - all: xzgv - -@@ -23,7 +25,7 @@ - backend.o - - xzgv: $(OBJS) -- $(CC) $(LDFLAGS) -o xzgv $(OBJS) -+ $(CC) -o xzgv $(OBJS) $(LDFLAGS) - - installdirs: - /bin/sh ../mkinstalldirs $(BINDIR) diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/misc/chirp/default.nix index 67d37489feb0..673ecdc85496 100644 --- a/pkgs/applications/misc/chirp/default.nix +++ b/pkgs/applications/misc/chirp/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "chirp-daily-${version}"; - version = "20170311"; + version = "20170714"; src = fetchurl { url = "http://trac.chirp.danplanet.com/chirp_daily/daily-${version}/${name}.tar.gz"; - sha256 = "0mvj650vm3bfk94b174gl99fj4jigrx38f1iciz1cp3gn8hcrcpj"; + sha256 = "1pglsmc0pf50w7df4vv30z5hmdxy4aqjl3qrv8kfiax7rld21gcy"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/misc/electron-cash/default.nix b/pkgs/applications/misc/electron-cash/default.nix new file mode 100644 index 000000000000..a45ab59ace8e --- /dev/null +++ b/pkgs/applications/misc/electron-cash/default.nix @@ -0,0 +1,66 @@ +{ stdenv, fetchFromGitHub, python2Packages }: + +python2Packages.buildPythonApplication rec { + version = "2.9.3"; + name = "electron-cash-${version}"; + + src = fetchFromGitHub { + owner = "fyookball"; + repo = "electrum"; + rev = version; + sha256 = "1r39b5ag5fipzgr84pzb53cfm8a4dy53257608754dwr1gfpma3v"; + }; + + propagatedBuildInputs = with python2Packages; [ + dns + ecdsa + jsonrpclib + pbkdf2 + pyaes + pycrypto + pyqt4 + pysocks + qrcode + requests + tlslite + + # plugins + keepkey + trezor + ]; + + preBuild = '' + sed -i 's,usr_share = .*,usr_share = "'$out'/share",g' setup.py + pyrcc4 icons.qrc -o gui/qt/icons_rc.py + # Recording the creation timestamps introduces indeterminism to the build + sed -i '/Created: .*/d' gui/qt/icons_rc.py + ''; + + postInstall = '' + # Despite setting usr_share above, these files are installed under + # $out/nix ... + mv $out/lib/python2.7/site-packages/nix/store"/"*/share $out + rm -rf $out/lib/python2.7/site-packages/nix + + substituteInPlace $out/share/applications/electron.desktop \ + --replace "Exec=electrum %u" "Exec=$out/bin/electrum %u" + ''; + + doInstallCheck = true; + installCheckPhase = '' + $out/bin/electrum help >/dev/null + ''; + + meta = with stdenv.lib; { + description = "A lightweight Bitcoin wallet"; + longDescription = '' + An easy-to-use Bitcoin client featuring wallets generated from + mnemonic seeds (in addition to other, more advanced, wallet options) + and the ability to perform transactions without downloading a copy + of the blockchain. + ''; + homepage = https://www.electroncash.org/; + maintainers = with maintainers; [ lassulus ]; + license = licenses.mit; + }; +} diff --git a/pkgs/applications/misc/far2l/default.nix b/pkgs/applications/misc/far2l/default.nix index 1097780723ec..7bd876f1d4aa 100644 --- a/pkgs/applications/misc/far2l/default.nix +++ b/pkgs/applications/misc/far2l/default.nix @@ -1,29 +1,34 @@ { stdenv, fetchFromGitHub, makeWrapper, cmake, pkgconfig, wxGTK30, glib, pcre, m4, bash, - xdg_utils, gvfs, zip, unzip, gzip, bzip2, gnutar, p7zip, xz, imagemagick }: + xdg_utils, gvfs, zip, unzip, gzip, bzip2, gnutar, p7zip, xz, imagemagick, darwin }: +with stdenv.lib; stdenv.mkDerivation rec { - rev = "de5554dbc0ec69329b75777d4a3b2f01851fc5ed"; - build = "unstable-2017-07-13.git${builtins.substring 0 7 rev}"; + rev = "1ecd3a37c7b866a4599c547ea332541de2a2af26"; + build = "unstable-2017-09-30.git${builtins.substring 0 7 rev}"; name = "far2l-2.1.${build}"; src = fetchFromGitHub { owner = "elfmz"; repo = "far2l"; rev = rev; - sha256 = "07l8w9p6zxm9qgh9wlci584lgv8gd4aw742jaqh9acgkxy9caih8"; + sha256 = "0mavg9z1n81b1hbkj320m36r8lpw28j07rl1d2hpg69y768yyq05"; }; nativeBuildInputs = [ cmake pkgconfig m4 makeWrapper imagemagick ]; - buildInputs = [ wxGTK30 glib pcre ]; + buildInputs = [ wxGTK30 glib pcre ] + ++ optional stdenv.isDarwin darwin.apple_sdk.frameworks.Cocoa; patches = [ ./add-nix-syntax-highlighting.patch ]; - postPatch = '' - echo 'echo ${build}' > far2l/bootstrap/scripts/vbuild.sh - - substituteInPlace far2l/bootstrap/open.sh \ + postPatch = optionalString stdenv.isLinux '' + substituteInPlace far2l/bootstrap/open.sh \ --replace 'gvfs-trash' '${gvfs}/bin/gvfs-trash' + '' + optionalString stdenv.isDarwin '' + substituteInPlace far2l/CMakeLists.txt \ + --replace "-framework System" -lSystem + '' + '' + echo 'echo ${build}' > far2l/bootstrap/scripts/vbuild.sh substituteInPlace far2l/bootstrap/open.sh \ --replace 'xdg-open' '${xdg_utils}/bin/xdg-open' substituteInPlace far2l/vtcompletor.cpp \ @@ -62,7 +67,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - meta = with stdenv.lib; { + meta = { description = "An orthodox file manager"; homepage = https://github.com/elfmz/far2l; license = licenses.gpl2; diff --git a/pkgs/applications/misc/gnuradio/default.nix b/pkgs/applications/misc/gnuradio/default.nix index e10cb30d1874..bd951c2a9a76 100644 --- a/pkgs/applications/misc/gnuradio/default.nix +++ b/pkgs/applications/misc/gnuradio/default.nix @@ -41,8 +41,14 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + postPatch = '' + substituteInPlace \ + gr-fec/include/gnuradio/fec/polar_decoder_common.h \ + --replace BOOST_CONSTEXPR_OR_CONST const + ''; + preConfigure = '' - export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -Wno-unused-variable" + export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -Wno-unused-variable -std=c++11" ''; # - Ensure we get an interactive backend for matplotlib. If not the gr_plot_* diff --git a/pkgs/applications/misc/googler/default.nix b/pkgs/applications/misc/googler/default.nix new file mode 100644 index 000000000000..026457fb8571 --- /dev/null +++ b/pkgs/applications/misc/googler/default.nix @@ -0,0 +1,25 @@ +{stdenv, fetchFromGitHub, python}: + +stdenv.mkDerivation rec { + version = "3.3"; + name = "googler-${version}"; + + src = fetchFromGitHub { + owner = "jarun"; + repo = "googler"; + rev = "v${version}"; + sha256 = "0gkzgcf0qss7fskgswryk835vivlv1f99ym1pbxy3vv9wcwx6a43"; + }; + + propagatedBuildInputs = [ python ]; + + makeFlags = "PREFIX=$(out)"; + + meta = with stdenv.lib; { + homepage = https://github.com/jarun/googler; + description = "Google Search, Google Site Search, Google News from the terminal"; + license = licenses.gpl3; + maintainers = with maintainers; [ koral ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/misc/gpx-viewer/default.nix b/pkgs/applications/misc/gpx-viewer/default.nix new file mode 100644 index 000000000000..a7485c4ee681 --- /dev/null +++ b/pkgs/applications/misc/gpx-viewer/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchurl, intltool, pkgconfig, gnome3, shared_mime_info, desktop_file_utils, wrapGAppsHook }: + +stdenv.mkDerivation rec { + name = "gpx-viewer-${version}"; + version = "0.4.0"; + + src = fetchurl { + url = "https://launchpad.net/gpx-viewer/trunk/${version}/+download/${name}.tar.gz"; + sha256 = "956acfaf870ac436300cd9953dece630df7fd7dff8e4ae2577a6002884466f80"; + }; + + patches = fetchurl { + url = "https://code.launchpad.net/~chkr/gpx-viewer/gtk3-bugfix/+merge/260766/+preview-diff/628965/+files/preview.diff"; + sha256 = "1yl7jk7skkcx10nny5zdixswcymjd9s9c1zhm1i5y3aqhchvmfs7"; + }; + patchFlags = [ "-p0" ]; + + nativeBuildInputs = [ + intltool pkgconfig + shared_mime_info # For update-mime-database + desktop_file_utils # For update-desktop-database + wrapGAppsHook # Fix error: GLib-GIO-ERROR **: No GSettings schemas are installed on the system + ]; + buildInputs = with gnome3; [ gdl libchamplain defaultIconTheme ]; + + meta = with stdenv.lib; { + homepage = https://blog.sarine.nl/tag/gpxviewer/; + description = "Simple tool to visualize tracks and waypoints stored in a gpx file"; + platforms = with platforms; linux; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/applications/misc/gqrx/default.nix b/pkgs/applications/misc/gqrx/default.nix index a0672f1810fb..27bda1e20928 100644 --- a/pkgs/applications/misc/gqrx/default.nix +++ b/pkgs/applications/misc/gqrx/default.nix @@ -8,13 +8,13 @@ assert pulseaudioSupport -> libpulseaudio != null; stdenv.mkDerivation rec { name = "gqrx-${version}"; - version = "2.7"; + version = "2.8"; src = fetchFromGitHub { owner = "csete"; repo = "gqrx"; rev = "v${version}"; - sha256 = "1dslb8l8ggj6vf9257c2bj0z8z1wy9c6sr2zksp5jdgf8m4j71im"; + sha256 = "0niy4c05886mhbfmix93j2bnj4kzdh9bvrmymawl6z28glyz5d3c"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/misc/hamster-time-tracker/default.nix b/pkgs/applications/misc/hamster-time-tracker/default.nix index b8bd514c9ff3..51a14fb20d0b 100644 --- a/pkgs/applications/misc/hamster-time-tracker/default.nix +++ b/pkgs/applications/misc/hamster-time-tracker/default.nix @@ -31,6 +31,10 @@ pythonPackages.buildPythonApplication rec { python waf build ''; + postFixup = '' + wrapPythonProgramsIn $out/lib/hamster-time-tracker "$out $pythonPath" + ''; + installPhase = '' python waf install ''; diff --git a/pkgs/applications/misc/hugo/default.nix b/pkgs/applications/misc/hugo/default.nix index c69bb5bea3bd..0dfc725b9ea6 100644 --- a/pkgs/applications/misc/hugo/default.nix +++ b/pkgs/applications/misc/hugo/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "hugo-${version}"; - version = "0.27.1"; + version = "0.29"; goPackagePath = "github.com/gohugoio/hugo"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "gohugoio"; repo = "hugo"; rev = "v${version}"; - sha256 = "0vxzjwm9dsan314cz0gnj4spssg4w8y6ywsak8n9c6w0l45xf07p"; + sha256 = "1vklws05534ig9rj55cqnxpqfsvns64kfdg6zjyrcpz7l0z07a33"; }; goDeps = ./deps.nix; diff --git a/pkgs/applications/misc/hugo/deps.nix b/pkgs/applications/misc/hugo/deps.nix index 240983b3c716..35faf6b57047 100644 --- a/pkgs/applications/misc/hugo/deps.nix +++ b/pkgs/applications/misc/hugo/deps.nix @@ -27,6 +27,15 @@ }; } { + goPackagePath = "github.com/alecthomas/chroma"; + fetch = { + type = "git"; + url = "https://github.com/alecthomas/chroma"; + rev = "b0295f66bdb7c61d54906003d7649185794e21b4"; + sha256 = "1hnvv13nphbzr9xm21fys7lgm0kd6qlbk58vc8fi802lxzsfmdis"; + }; + } + { goPackagePath = "github.com/bep/gitmap"; fetch = { type = "git"; @@ -40,8 +49,8 @@ fetch = { type = "git"; url = "https://github.com/chaseadamsio/goorgeous"; - rev = "677defd0e024333503d8c946dd4ba3f32ad3e5d2"; - sha256 = "1mcncs3qdb62m9xwhkxy743ddvgsjfbmbl2djnhqmz1va05njna1"; + rev = "098da33fde5f9220736531b3cb26a2dec86a8367"; + sha256 = "1cwag5vzgrzy22rvcp12whzgqbgrmdmaxar0fl4nwqxdhy90s67k"; }; } { @@ -54,6 +63,15 @@ }; } { + goPackagePath = "github.com/danwakefield/fnmatch"; + fetch = { + type = "git"; + url = "https://github.com/danwakefield/fnmatch"; + rev = "cbb64ac3d964b81592e64f957ad53df015803288"; + sha256 = "0cbf511ppsa6hf59mdl7nbyn2b2n71y0bpkzbmfkdqjhanqh1lqz"; + }; + } + { goPackagePath = "github.com/dchest/cssmin"; fetch = { type = "git"; @@ -63,6 +81,15 @@ }; } { + goPackagePath = "github.com/dlclark/regexp2"; + fetch = { + type = "git"; + url = "https://github.com/dlclark/regexp2"; + rev = "487489b64fb796de2e55f4e8a4ad1e145f80e957"; + sha256 = "144s81ndviwhyy20ipxvvfvap8phv5p762glxrz6aqxprkxfarj5"; + }; + } + { goPackagePath = "github.com/eknkc/amber"; fetch = { type = "git"; @@ -207,15 +234,6 @@ }; } { - goPackagePath = "github.com/pelletier/go-buffruneio"; - fetch = { - type = "git"; - url = "https://github.com/pelletier/go-buffruneio"; - rev = "c37440a7cf42ac63b919c752ca73a85067e05992"; - sha256 = "0l83p1gg6g5mmhmxjisrhfimhbm71lwn1r2w7d6siwwqm9q08sd2"; - }; - } - { goPackagePath = "github.com/pelletier/go-toml"; fetch = { type = "git"; diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix index 8952b7edba4e..38eba46138ef 100644 --- a/pkgs/applications/misc/josm/default.nix +++ b/pkgs/applications/misc/josm/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "josm-${version}"; - version = "12712"; + version = "12921"; src = fetchurl { url = "https://josm.openstreetmap.de/download/josm-snapshot-${version}.jar"; - sha256 = "0lpz4yzkvjpn5g36nibrkh773jnlkiqj6lghsx69i86h0xfb7gqf"; + sha256 = "1fp6mpl8fa91dhdf3hw5hk8xsp1imj7558adjnjkb6n4vmrbszhm"; }; buildInputs = [ jre8 makeWrapper ]; diff --git a/pkgs/applications/misc/merkaartor/default.nix b/pkgs/applications/misc/merkaartor/default.nix index a1744f7a2c03..d1befec34082 100644 --- a/pkgs/applications/misc/merkaartor/default.nix +++ b/pkgs/applications/misc/merkaartor/default.nix @@ -1,25 +1,27 @@ -{ stdenv, fetchFromGitHub, qt4, qmake4Hook, boost, proj, gdal, sqlite, pkgconfig }: +{ stdenv, fetchFromGitHub, qmake, pkgconfig, boost, gdal, proj +, qtbase, qtsvg, qtwebkit }: stdenv.mkDerivation rec { name = "merkaartor-${version}"; - version = "0.18.2"; + version = "0.18.3"; src = fetchFromGitHub { owner = "openstreetmap"; repo = "merkaartor"; rev = version; - sha256 = "1a8kzrc9w0b2a2zgw9dbbi15jy9ynv6nf2sg3k4dbh7f1s2ajx9l"; + sha256 = "0ls3q8m1hxiwyrypy6qca8wczhl4969ncl0sszfdwfv70rzxjk88"; }; - buildInputs = [ qt4 boost proj gdal sqlite ]; + nativeBuildInputs = [ qmake pkgconfig ]; - nativeBuildInputs = [ qmake4Hook pkgconfig ]; + buildInputs = [ boost gdal proj qtbase qtsvg qtwebkit ]; - meta = { - description = "An openstreetmap editor"; - homepage = http://merkaartor.org/; - license = stdenv.lib.licenses.gpl2Plus; - maintainers = with stdenv.lib.maintainers; [viric]; - inherit (qt4.meta) platforms; + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "OpenStreetMap editor"; + homepage = http://merkaartor.be/; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ viric ]; }; } diff --git a/pkgs/applications/misc/mupdf/default.nix b/pkgs/applications/misc/mupdf/default.nix index da5f3c3bf128..9fe275b490c1 100644 --- a/pkgs/applications/misc/mupdf/default.nix +++ b/pkgs/applications/misc/mupdf/default.nix @@ -1,6 +1,8 @@ -{ stdenv, fetchurl, fetchpatch, pkgconfig -, zlib, freetype, libjpeg, jbig2dec, openjpeg -, libX11, libXcursor, libXrandr, libXinerama, libXext, harfbuzz, mesa }: +{ stdenv, lib, fetchurl, fetchpatch, pkgconfig +, freetype, harfbuzz, openjpeg, jbig2dec +, enableX11 ? true, libX11, libXext +, enableCurl ? true, curl, openssl +}: stdenv.mkDerivation rec { version = "1.11"; @@ -28,7 +30,9 @@ stdenv.mkDerivation rec { makeFlags = [ "prefix=$(out)" ]; nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ zlib libX11 libXcursor libXext harfbuzz mesa libXrandr libXinerama freetype libjpeg jbig2dec openjpeg ]; + buildInputs = [ freetype harfbuzz openjpeg jbig2dec ] + ++ lib.optionals enableX11 [ libX11 libXext ] + ++ lib.optionals enableCurl [ curl openssl ]; outputs = [ "bin" "dev" "out" "man" "doc" ]; preConfigure = '' diff --git a/pkgs/applications/misc/octoprint/default.nix b/pkgs/applications/misc/octoprint/default.nix index 7c8eab9f11e8..507b4f2cab9f 100644 --- a/pkgs/applications/misc/octoprint/default.nix +++ b/pkgs/applications/misc/octoprint/default.nix @@ -91,6 +91,8 @@ in pythonPackages.buildPythonApplication rec { -e 's,psutil>=[^"]*,psutil,g' \ -e 's,requests>=[^"]*,requests,g' \ -e 's,future>=[^"]*,future,g' \ + -e 's,pyserial>=[^"]*,pyserial,g' \ + -e 's,semantic_version>=[^"]*,semantic_version,g' \ setup.py ''; diff --git a/pkgs/applications/misc/octoprint/m33-fio-one-library.patch b/pkgs/applications/misc/octoprint/m33-fio-one-library.patch index 87b00f3ab705..24c9c4a80f5d 100644 --- a/pkgs/applications/misc/octoprint/m33-fio-one-library.patch +++ b/pkgs/applications/misc/octoprint/m33-fio-one-library.patch @@ -1,18 +1,18 @@ -From 0defcf6ec155899c414f66524b7df629f59327f0 Mon Sep 17 00:00:00 2001 +From 314bcebfcd1759981ce12255be29d8ae68cd400b Mon Sep 17 00:00:00 2001 From: Nikolay Amiantov <ab@fmap.me> Date: Wed, 23 Nov 2016 00:40:48 +0300 Subject: [PATCH] Build and use one version of preprocessor library --- - octoprint_m33fio/__init__.py | 67 ++---------------------------------------- - shared library source/Makefile | 62 +++----------------------------------- - 2 files changed, 6 insertions(+), 123 deletions(-) + octoprint_m33fio/__init__.py | 73 ++---------------------------------------- + shared library source/Makefile | 62 +++-------------------------------- + 2 files changed, 6 insertions(+), 129 deletions(-) diff --git a/octoprint_m33fio/__init__.py b/octoprint_m33fio/__init__.py -index 4b43c59..d1259e4 100755 +index 054870a..4d5ecc1 100755 --- a/octoprint_m33fio/__init__.py +++ b/octoprint_m33fio/__init__.py -@@ -1062,71 +1062,8 @@ class M33FioPlugin( +@@ -1189,78 +1189,9 @@ class M33FioPlugin( # Check if using shared library or checking if it is usable if self._settings.get_boolean(["UseSharedLibrary"]) or isUsable : @@ -54,7 +54,9 @@ index 4b43c59..d1259e4 100755 - - # Otherwise check if running on Windows and using an i386 or x86-64 device - elif platform.uname()[0].startswith("Windows") and (platform.uname()[4].endswith("86") or platform.uname()[4].endswith("64")) : -- ++ # Set shared library ++ self.sharedLibrary = ctypes.cdll.LoadLibrary(self._basefolder.replace('\\', '/') + "/static/libraries/libpreprocessor.so") + - # Check if Python is running as 32-bit - if platform.architecture()[0].startswith("32") : - @@ -81,11 +83,16 @@ index 4b43c59..d1259e4 100755 - - # Set shared library - self.sharedLibrary = ctypes.cdll.LoadLibrary(self._basefolder.replace("\\", "/") + "/static/libraries/preprocessor_x86-64.dylib") -+ # Set shared library -+ self.sharedLibrary = ctypes.cdll.LoadLibrary(self._basefolder.replace('\\', '/') + "/static/libraries/libpreprocessor.so") - +- +- # Otherwise check if running FreeBSD +- elif platform.uname()[0].startswith("FreeBSD") : +- +- # TODO: Compile FreeBSD shared library pre-processors +- pass +- # Check if shared library was set if self.sharedLibrary : + diff --git a/shared library source/Makefile b/shared library source/Makefile index 792b4f4..4c74f5c 100755 --- a/shared library source/Makefile @@ -164,5 +171,5 @@ index 792b4f4..4c74f5c 100755 clean: rm -f ../octoprint_m33fio/static/libraries/$(PROG) -- -2.11.0 +2.14.1 diff --git a/pkgs/applications/misc/octoprint/plugins.nix b/pkgs/applications/misc/octoprint/plugins.nix index c09e8d2f5e66..0a1d26012a80 100644 --- a/pkgs/applications/misc/octoprint/plugins.nix +++ b/pkgs/applications/misc/octoprint/plugins.nix @@ -12,13 +12,13 @@ let m33-fio = buildPlugin rec { name = "M33-Fio-${version}"; - version = "1.20"; + version = "1.21"; src = fetchFromGitHub { owner = "donovan6000"; repo = "M33-Fio"; rev = "V${version}"; - sha256 = "1ng7lzlkqsjcr1w7wgzwsqkkvcvpajcj2cwqlffh95916sw8n767"; + sha256 = "1la3611kkqn8yiwjn6cizc45ri8pnk6ckld1na4nk6mqk88jvjq7"; }; patches = [ diff --git a/pkgs/applications/misc/pcmanx-gtk2/default.nix b/pkgs/applications/misc/pcmanx-gtk2/default.nix index 65366607c50c..0d0ebb658eea 100644 --- a/pkgs/applications/misc/pcmanx-gtk2/default.nix +++ b/pkgs/applications/misc/pcmanx-gtk2/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation { homepage = http://pcman.ptt.cc; license = licenses.gpl2; description = "Telnet BBS browser with GTK+ interface"; - maintainers = [ maintainers.mingchuan ]; + maintainers = [ maintainers.sifmelcara ]; platforms = platforms.linux; }; } diff --git a/pkgs/applications/misc/pytrainer/default.nix b/pkgs/applications/misc/pytrainer/default.nix index bc6b4e16a378..ecc4c341a686 100644 --- a/pkgs/applications/misc/pytrainer/default.nix +++ b/pkgs/applications/misc/pytrainer/default.nix @@ -1,38 +1,45 @@ -{ stdenv, fetchurl, pythonPackages, sqlite, gpsbabel }: +{ stdenv, fetchFromGitHub, perl, python2Packages, sqlite, gpsbabel +, withWebKit ? false }: let # Pytrainer needs a matplotlib with GTK backend. Also ensure we are # using the pygtk with glade support as needed by pytrainer. - matplotlibGtk = pythonPackages.matplotlib.override { + matplotlibGtk = python2Packages.matplotlib.override { enableGtk2 = true; - pygtk = pythonPackages.pyGtkGlade; + pygtk = python2Packages.pyGtkGlade; }; in -pythonPackages.buildPythonApplication rec { +python2Packages.buildPythonApplication rec { name = "pytrainer-${version}"; - version = "1.10.0"; + version = "1.11.0"; - src = fetchurl { - url = "https://github.com/pytrainer/pytrainer/archive/v${version}.tar.gz"; - sha256 = "0l42p630qhymgrcvxgry8chrpzcp6nr3d1vd7vhifh2npfq9l09y"; + src = fetchFromGitHub { + owner = "pytrainer"; + repo = "pytrainer"; + rev = "v${version}"; + sha256 = "1x4f1ydjql0aisvxs5kyi9lx35b4q3768dx42fyzq1nxdwzaqyvy"; }; namePrefix = ""; - # The existing use of pywebkitgtk shows raw HTML text instead of - # map. This patch solves the problems by showing the file from a - # string, which allows setting an explicit MIME type. - patches = [ ./pytrainer-webkit.patch ]; + patches = [ + # The test fails in the UTC timezone and C locale. + ./fix-test-tz.patch - propagatedBuildInputs = with pythonPackages; [ - dateutil lxml matplotlibGtk pyGtkGlade pywebkitgtk - sqlalchemy_migrate + # The existing use of pywebkitgtk shows raw HTML text instead of + # map. This patch solves the problems by showing the file from a + # string, which allows setting an explicit MIME type. + ./pytrainer-webkit.patch ]; - buildInputs = [ gpsbabel sqlite ]; + propagatedBuildInputs = with python2Packages; [ + dateutil lxml matplotlibGtk pyGtkGlade sqlalchemy_migrate + ] ++ stdenv.lib.optional withWebKit [ pywebkitgtk ]; + + buildInputs = [ perl gpsbabel sqlite ]; # This package contains no binaries to patch or strip. dontPatchELF = true; diff --git a/pkgs/applications/misc/pytrainer/fix-test-tz.patch b/pkgs/applications/misc/pytrainer/fix-test-tz.patch new file mode 100644 index 000000000000..359e28c41c34 --- /dev/null +++ b/pkgs/applications/misc/pytrainer/fix-test-tz.patch @@ -0,0 +1,33 @@ +diff -Nurp pytrainer-v1.11.0-a/pytrainer/test/core/test_activity.py pytrainer-v1.11.0-b/pytrainer/test/core/test_activity.py +--- pytrainer-v1.11.0-a/pytrainer/test/core/test_activity.py 1980-01-02 00:00:00.000000000 +0100 ++++ pytrainer-v1.11.0-b/pytrainer/test/core/test_activity.py 2017-09-30 18:56:43.127016847 +0200 +@@ -69,7 +69,7 @@ class ActivityTest(unittest.TestCase): + self.assertEquals(self.activity.time, self.activity.duration) + + def test_activity_starttime(self): +- self.assertEquals(self.activity.starttime, '12:58:23 PM') ++ self.assertEquals(self.activity.starttime, '12:58:23') + + def test_activity_time_tuple(self): + self.assertEquals(self.activity.time_tuple, (2, 3, 46)) +diff -Nurp pytrainer-v1.11.0-a/pytrainer/test/imports/test_garmintcxv2.py pytrainer-v1.11.0-b/pytrainer/test/imports/test_garmintcxv2.py +--- pytrainer-v1.11.0-a/pytrainer/test/imports/test_garmintcxv2.py 1980-01-02 00:00:00.000000000 +0100 ++++ pytrainer-v1.11.0-b/pytrainer/test/imports/test_garmintcxv2.py 2017-09-30 18:55:45.078128980 +0200 +@@ -23,7 +23,7 @@ class GarminTCXv2Test(unittest.TestCase) + self.fail() + + def test_workout_summary(self): +- summary = [(0, False, '2012-10-14T12:02:42', '10.12', '00:39:51', 'Running')] ++ summary = [(0, False, '2012-10-14T10:02:42', '10.12', '00:39:51', 'Running')] + try: + current_path = os.path.dirname(os.path.abspath(__file__)) + data_path = os.path.dirname(os.path.dirname(os.path.dirname(current_path))) + "/" +diff -Nurp pytrainer-v1.11.0-a/pytrainer/test/lib/test_date.py pytrainer-v1.11.0-b/pytrainer/test/lib/test_date.py +--- pytrainer-v1.11.0-a/pytrainer/test/lib/test_date.py 1980-01-02 00:00:00.000000000 +0100 ++++ pytrainer-v1.11.0-b/pytrainer/test/lib/test_date.py 2017-09-30 18:56:23.448720166 +0200 +@@ -45,4 +45,4 @@ class DateFunctionTest(unittest.TestCase + def test_getDateTime(self): + utctime, localtime = getDateTime('Tue Nov 24 17:29:05 UTC 2015') + self.assertEqual(datetime.datetime(2015, 11, 24, 17, 29, 5, tzinfo=tzutc()), utctime) +- self.assertEqual(datetime.datetime(2015, 11, 24, 19, 29, 5, tzinfo=tzlocal()), localtime) ++ self.assertEqual(datetime.datetime(2015, 11, 24, 17, 29, 5, tzinfo=tzlocal()), localtime) diff --git a/pkgs/applications/misc/qmapshack/default.nix b/pkgs/applications/misc/qmapshack/default.nix new file mode 100644 index 000000000000..7330dfa4f199 --- /dev/null +++ b/pkgs/applications/misc/qmapshack/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchFromBitbucket, cmake, qtscript, qtwebkit, gdal, proj, routino, quazip }: + +stdenv.mkDerivation rec { + name = "qmapshack-${version}"; + version = "1.9.1"; + + src = fetchFromBitbucket { + owner = "maproom"; + repo = "qmapshack"; + rev = "V%20${version}"; + sha256 = "1yswdq1s9jjhwb3wfiy3kkiiaqzagw28vjqvl13jxcnmq7y763sr"; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ qtscript qtwebkit gdal proj routino quazip ]; + + cmakeFlags = [ + "-DROUTINO_XML_PATH=${routino}/share/routino" + "-DQUAZIP_INCLUDE_DIR=${quazip}/include/quazip" + "-DLIBQUAZIP_LIBRARY=${quazip}/lib/libquazip.so" + ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = https://bitbucket.org/maproom/qmapshack/wiki/Home; + description = "Plan your next outdoor trip"; + license = licenses.gpl3; + maintainter = with maintainers; [ dotlambda ]; + platforms = with platforms; linux; + }; +} diff --git a/pkgs/applications/misc/rescuetime/default.nix b/pkgs/applications/misc/rescuetime/default.nix index 03d058783b23..8b93dd51406b 100644 --- a/pkgs/applications/misc/rescuetime/default.nix +++ b/pkgs/applications/misc/rescuetime/default.nix @@ -9,14 +9,14 @@ let } else fetchurl { name = "rescuetime-installer.deb"; url = "https://www.rescuetime.com/installers/rescuetime_current_amd64.deb"; - sha256 = "161f71kvcrilv9qxldwn8xsqs2g9c2f2g9wb5brbfc0lqbbc8n89"; + sha256 = "1xjwaqz0gs12ndgw7c2f1nkvj0nqcl0bxhd54pwk0dwrx9pn9avz"; }; in stdenv.mkDerivation { # https://www.rescuetime.com/updates/linux_release_notes.html - name = "rescuetime-2.9.11.1285"; + name = "rescuetime-2.9.11.1300"; inherit src; buildInputs = [ dpkg makeWrapper ]; unpackPhase = '' diff --git a/pkgs/applications/misc/robo3t/default.nix b/pkgs/applications/misc/robo3t/default.nix new file mode 100644 index 000000000000..5ebb2b1189a3 --- /dev/null +++ b/pkgs/applications/misc/robo3t/default.nix @@ -0,0 +1,77 @@ +{ stdenv, fetchurl, zlib, glib, xorg, dbus, fontconfig, + freetype, xkeyboard_config, makeDesktopItem, makeWrapper }: + +stdenv.mkDerivation rec { + name = "robo3t-${version}"; + version = "1.1.1"; + + src = fetchurl { + url = "https://download.robomongo.org/1.1.1/linux/robo3t-${version}-linux-x86_64-c93c6b0.tar.gz"; + sha256 = "140cn80vg7c8vpdjasqi4b3kyqj4n033lcm3ikz5674x3jr7r5zs"; + }; + + icon = fetchurl { + url = "https://github.com/Studio3T/robomongo/raw/${version}/trash/install/linux/robomongo.png"; + sha256 = "15li8536x600kkfkb3h6mw7y0f2ljkv951pc45dpiw036vldibv2"; + }; + + desktopItem = makeDesktopItem { + name = "Robo3T"; + exec = "robo3t"; + icon = icon; + comment = "Query GUI for mongodb"; + desktopName = "Robo3T"; + genericName = "MongoDB management tool"; + categories = "Development;IDE;mongodb;"; + }; + + nativeBuildInputs = [makeWrapper]; + + ldLibraryPath = stdenv.lib.makeLibraryPath [ + stdenv.cc.cc + zlib + glib + xorg.libXi + xorg.libxcb + xorg.libXrender + xorg.libX11 + xorg.libSM + xorg.libICE + xorg.libXext + dbus + fontconfig + freetype + ]; + + installPhase = '' + BASEDIR=$out/lib/robo3t + + mkdir -p $BASEDIR/bin + cp bin/* $BASEDIR/bin + + mkdir -p $BASEDIR/lib + cp -r lib/* $BASEDIR/lib + + mkdir -p $out/share/applications + cp $desktopItem/share/applications/* $out/share/applications + + mkdir -p $out/share/icons + cp ${icon} $out/share/icons/robomongo.png + + patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux-x86-64.so.2 $BASEDIR/bin/robo3t + + mkdir $out/bin + + makeWrapper $BASEDIR/bin/robo3t $out/bin/robo3t \ + --suffix LD_LIBRARY_PATH : ${ldLibraryPath} \ + --suffix QT_XKB_CONFIG_ROOT : ${xkeyboard_config}/share/X11/xkb + ''; + + meta = { + homepage = https://robomongo.org/; + description = "Query GUI for mongodb"; + platforms = stdenv.lib.intersectLists stdenv.lib.platforms.linux stdenv.lib.platforms.x86_64; + license = stdenv.lib.licenses.gpl3; + maintainers = [ stdenv.lib.maintainers.eperuffo ]; + }; +} diff --git a/pkgs/applications/misc/stupidterm/default.nix b/pkgs/applications/misc/stupidterm/default.nix new file mode 100644 index 000000000000..5701997fd299 --- /dev/null +++ b/pkgs/applications/misc/stupidterm/default.nix @@ -0,0 +1,36 @@ +{ stdenv, fetchFromGitHub, pkgconfig, vte, gtk }: + +stdenv.mkDerivation rec { + name = "stupidterm-2017-03-15"; + + nativeBuildInputs = [ pkgconfig ]; + + buildInputs = [ vte gtk ]; + + src = fetchFromGitHub { + owner = "esmil"; + repo = "stupidterm"; + rev = "752316a783f52317ffd9f05d32e208dbcafc5ba6"; + sha256 = "1d8fyhr9sgpxgkwzkyiws0kvhmqfwwyycvcr1qf2wjldiax222lv"; + }; + + makeFlags = "PKGCONFIG=${pkgconfig}/bin/pkg-config binary=stupidterm"; + + installPhase = '' + mkdir -p $out/bin $out/share/applications $out/share/stupidterm + cp stupidterm $out/bin + substituteAll ${./stupidterm.desktop} $out/share/applications/stupidterm.desktop + substituteAll stupidterm.ini $out/share/stupidterm/stupidterm.ini + ''; + + meta = with stdenv.lib; { + description = "Simple wrapper around the VTE terminal emulator widget for GTK+"; + longDescription = '' + Simple wrapper around the VTE terminal emulator widget for GTK+ + ''; + homepage = https://github.com/esmil/stupidterm; + license = licenses.lgpl3Plus; + maintainers = [ maintainers.etu ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/stupidterm/stupidterm.desktop b/pkgs/applications/misc/stupidterm/stupidterm.desktop new file mode 100644 index 000000000000..c26d46060183 --- /dev/null +++ b/pkgs/applications/misc/stupidterm/stupidterm.desktop @@ -0,0 +1,9 @@ +[Desktop Entry] +Version=20170315 +Name=stupidterm +Comment=VTE based terminal emulator +Exec=stupidterm +Icon=utilities-terminal +Terminal=false +Type=Application +Categories=System;TerminalEmulator; diff --git a/pkgs/applications/misc/tint2/default.nix b/pkgs/applications/misc/tint2/default.nix index 6a613b6d5b5b..e77acedac086 100644 --- a/pkgs/applications/misc/tint2/default.nix +++ b/pkgs/applications/misc/tint2/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { name = "tint2-${version}"; - version = "15.1"; + version = "15.2"; src = fetchFromGitLab { owner = "o9000"; repo = "tint2"; rev = version; - sha256 = "16mpvknibbqy0vjgkwig7g8i6rivm14ipd7ixvqydgcj7wibn0b7"; + sha256 = "1lfk3zcgmmlby353gs70gpi0m28nx2c20wxqgaw7268a69r5cz7a"; }; enableParallelBuilding = true; @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { homepage = https://gitlab.com/o9000/tint2; description = "Simple panel/taskbar unintrusive and light (memory, cpu, aestetic)"; license = stdenv.lib.licenses.gpl2; - platforms = stdenv.lib.platforms.unix; + platforms = stdenv.lib.platforms.linux; maintainers = [ stdenv.lib.maintainers.romildo ]; }; } diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix index c4fd85ab93e9..f6f9a829c2d1 100644 --- a/pkgs/applications/networking/browsers/chromium/common.nix +++ b/pkgs/applications/networking/browsers/chromium/common.nix @@ -90,6 +90,15 @@ let sha256 = "1vhslc4xg0d6wzlsi99zpah2xzjziglccrxn55k7qna634wyxg77"; }; + versionRange = min-version: upto-version: + let inherit (upstream-info) version; + result = versionAtLeast version min-version && versionOlder version upto-version; + stable-version = (import ./upstream-info.nix).stable.version; + in if versionAtLeast stable-version upto-version + then warn "chromium: stable version ${stable-version} is newer than a patchset bounded at ${upto-version}. You can safely delete it." + result + else result; + base = rec { name = "${packageName}-${version}"; inherit (upstream-info) version; @@ -117,15 +126,31 @@ let patches = [ ./patches/nix_plugin_paths_52.patch + # To enable ChromeCast, go to chrome://flags and set "Load Media Router Component Extension" to Enabled + # Fixes Chromecast: https://bugs.chromium.org/p/chromium/issues/detail?id=734325 + ./patches/fix_network_api_crash.patch + ] # As major versions are added, you can trawl the gentoo and arch repos at + # https://gitweb.gentoo.org/repo/gentoo.git/plain/www-client/chromium/ + # https://git.archlinux.org/svntogit/packages.git/tree/trunk?h=packages/chromium + # for updated patches and hints about build flags + ++ optionals (versionRange "61" "62") [ ./patches/chromium-gn-bootstrap-r14.patch ./patches/chromium-gcc-r1.patch ./patches/chromium-atk-r1.patch ./patches/chromium-gcc5-r1.patch - # To enable ChromeCast, go to chrome://flags and set "Load Media Router Component Extension" to Enabled - # Fixes Chromecast: https://bugs.chromium.org/p/chromium/issues/detail?id=734325 - ./patches/fix_network_api_crash.patch - - ] ++ optional enableWideVine ./patches/widevine.patch; + ] + ++ optionals (versionRange "62" "63") [ + ./patches/chromium-gn-bootstrap-r17.patch + ./patches/chromium-gcc5-r2.patch + ./patches/chromium-glibc2.26-r1.patch + ] + ++ optionals (versionAtLeast version "63") [ + ./patches/chromium-gn-bootstrap-r19.patch + ./patches/chromium-gcc5-r2.patch + ./patches/chromium-glibc2.26-r1.patch + ./patches/chromium-sysroot-r1.patch + ] + ++ optional enableWideVine ./patches/widevine.patch; postPatch = '' # We want to be able to specify where the sandbox is via CHROME_DEVEL_SANDBOX diff --git a/pkgs/applications/networking/browsers/chromium/patches/chromium-gcc5-r2.patch b/pkgs/applications/networking/browsers/chromium/patches/chromium-gcc5-r2.patch new file mode 100644 index 000000000000..f2be2d5b8aeb --- /dev/null +++ b/pkgs/applications/networking/browsers/chromium/patches/chromium-gcc5-r2.patch @@ -0,0 +1,36 @@ +--- a/third_party/WebKit/Source/platform/wtf/typed_arrays/ArrayBufferContents.h ++++ b/third_party/WebKit/Source/platform/wtf/typed_arrays/ArrayBufferContents.h +@@ -63,7 +63,7 @@ class WTF_EXPORT ArrayBufferContents { + allocation_length_(0), + data_(data), + data_length_(0), +- kind_(AllocationKind::kNormal), ++ kind_(WTF::ArrayBufferContents::AllocationKind::kNormal), + deleter_(deleter) {} + DataHandle(void* allocation_base, + size_t allocation_length, +@@ -94,11 +94,11 @@ class WTF_EXPORT ArrayBufferContents { + reinterpret_cast<uintptr_t>(allocation_base_) + + allocation_length_); + switch (kind_) { +- case AllocationKind::kNormal: ++ case WTF::ArrayBufferContents::AllocationKind::kNormal: + DCHECK(deleter_); + deleter_(data_); + return; +- case AllocationKind::kReservation: ++ case WTF::ArrayBufferContents::AllocationKind::kReservation: + ReleaseReservedMemory(allocation_base_, allocation_length_); + return; + } +--- a/third_party/webrtc/modules/audio_processing/aec3/aec_state.cc.orig 2017-08-15 12:45:59.433532111 +0000 ++++ b/third_party/webrtc/modules/audio_processing/aec3/aec_state.cc 2017-08-15 17:52:59.691328825 +0000 +@@ -10,7 +10,7 @@ + + #include "webrtc/modules/audio_processing/aec3/aec_state.h" + +-#include <math.h> ++#include <cmath> + #include <numeric> + #include <vector> + diff --git a/pkgs/applications/networking/browsers/chromium/patches/chromium-glibc2.26-r1.patch b/pkgs/applications/networking/browsers/chromium/patches/chromium-glibc2.26-r1.patch new file mode 100644 index 000000000000..ec37a2816d51 --- /dev/null +++ b/pkgs/applications/networking/browsers/chromium/patches/chromium-glibc2.26-r1.patch @@ -0,0 +1,220 @@ +diff --git a/breakpad/src/client/linux/dump_writer_common/ucontext_reader.cc b/breakpad/src/client/linux/dump_writer_common/ucontext_reader.cc +index c80724d..052ce37 100644 +--- a/breakpad/src/client/linux/dump_writer_common/ucontext_reader.cc ++++ b/breakpad/src/client/linux/dump_writer_common/ucontext_reader.cc +@@ -36,19 +36,19 @@ namespace google_breakpad { + + // Minidump defines register structures which are different from the raw + // structures which we get from the kernel. These are platform specific +-// functions to juggle the ucontext and user structures into minidump format. ++// functions to juggle the ucontext_t and user structures into minidump format. + + #if defined(__i386__) + +-uintptr_t UContextReader::GetStackPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetStackPointer(const ucontext_t* uc) { + return uc->uc_mcontext.gregs[REG_ESP]; + } + +-uintptr_t UContextReader::GetInstructionPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetInstructionPointer(const ucontext_t* uc) { + return uc->uc_mcontext.gregs[REG_EIP]; + } + +-void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc, ++void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext_t *uc, + const struct _libc_fpstate* fp) { + const greg_t* regs = uc->uc_mcontext.gregs; + +@@ -88,15 +88,15 @@ void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc, + + #elif defined(__x86_64) + +-uintptr_t UContextReader::GetStackPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetStackPointer(const ucontext_t* uc) { + return uc->uc_mcontext.gregs[REG_RSP]; + } + +-uintptr_t UContextReader::GetInstructionPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetInstructionPointer(const ucontext_t* uc) { + return uc->uc_mcontext.gregs[REG_RIP]; + } + +-void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc, ++void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext_t *uc, + const struct _libc_fpstate* fpregs) { + const greg_t* regs = uc->uc_mcontext.gregs; + +@@ -145,15 +145,15 @@ void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc, + + #elif defined(__ARM_EABI__) + +-uintptr_t UContextReader::GetStackPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetStackPointer(const ucontext_t* uc) { + return uc->uc_mcontext.arm_sp; + } + +-uintptr_t UContextReader::GetInstructionPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetInstructionPointer(const ucontext_t* uc) { + return uc->uc_mcontext.arm_pc; + } + +-void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc) { ++void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext_t *uc) { + out->context_flags = MD_CONTEXT_ARM_FULL; + + out->iregs[0] = uc->uc_mcontext.arm_r0; +@@ -184,15 +184,15 @@ void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc) { + + #elif defined(__aarch64__) + +-uintptr_t UContextReader::GetStackPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetStackPointer(const ucontext_t* uc) { + return uc->uc_mcontext.sp; + } + +-uintptr_t UContextReader::GetInstructionPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetInstructionPointer(const ucontext_t* uc) { + return uc->uc_mcontext.pc; + } + +-void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc, ++void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext_t *uc, + const struct fpsimd_context* fpregs) { + out->context_flags = MD_CONTEXT_ARM64_FULL; + +@@ -210,15 +210,15 @@ void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc, + + #elif defined(__mips__) + +-uintptr_t UContextReader::GetStackPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetStackPointer(const ucontext_t* uc) { + return uc->uc_mcontext.gregs[MD_CONTEXT_MIPS_REG_SP]; + } + +-uintptr_t UContextReader::GetInstructionPointer(const struct ucontext* uc) { ++uintptr_t UContextReader::GetInstructionPointer(const ucontext_t* uc) { + return uc->uc_mcontext.pc; + } + +-void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext *uc) { ++void UContextReader::FillCPUContext(RawContextCPU *out, const ucontext_t *uc) { + #if _MIPS_SIM == _ABI64 + out->context_flags = MD_CONTEXT_MIPS64_FULL; + #elif _MIPS_SIM == _ABIO32 +diff --git a/breakpad/src/client/linux/dump_writer_common/ucontext_reader.h b/breakpad/src/client/linux/dump_writer_common/ucontext_reader.h +index b6e77b4..2de80b7 100644 +--- a/breakpad/src/client/linux/dump_writer_common/ucontext_reader.h ++++ b/breakpad/src/client/linux/dump_writer_common/ucontext_reader.h +@@ -39,23 +39,23 @@ + + namespace google_breakpad { + +-// Wraps platform-dependent implementations of accessors to ucontext structs. ++// Wraps platform-dependent implementations of accessors to ucontext_t structs. + struct UContextReader { +- static uintptr_t GetStackPointer(const struct ucontext* uc); ++ static uintptr_t GetStackPointer(const ucontext_t* uc); + +- static uintptr_t GetInstructionPointer(const struct ucontext* uc); ++ static uintptr_t GetInstructionPointer(const ucontext_t* uc); + +- // Juggle a arch-specific ucontext into a minidump format ++ // Juggle a arch-specific ucontext_t into a minidump format + // out: the minidump structure + // info: the collection of register structures. + #if defined(__i386__) || defined(__x86_64) +- static void FillCPUContext(RawContextCPU *out, const ucontext *uc, ++ static void FillCPUContext(RawContextCPU *out, const ucontext_t *uc, + const struct _libc_fpstate* fp); + #elif defined(__aarch64__) +- static void FillCPUContext(RawContextCPU *out, const ucontext *uc, ++ static void FillCPUContext(RawContextCPU *out, const ucontext_t *uc, + const struct fpsimd_context* fpregs); + #else +- static void FillCPUContext(RawContextCPU *out, const ucontext *uc); ++ static void FillCPUContext(RawContextCPU *out, const ucontext_t *uc); + #endif + }; + +diff --git a/breakpad/src/client/linux/handler/exception_handler.cc b/breakpad/src/client/linux/handler/exception_handler.cc +index 586d84e..05936d2 100644 +--- a/breakpad/src/client/linux/handler/exception_handler.cc ++++ b/breakpad/src/client/linux/handler/exception_handler.cc +@@ -457,9 +457,9 @@ bool ExceptionHandler::HandleSignal(int /*sig*/, siginfo_t* info, void* uc) { + // Fill in all the holes in the struct to make Valgrind happy. + memset(&g_crash_context_, 0, sizeof(g_crash_context_)); + memcpy(&g_crash_context_.siginfo, info, sizeof(siginfo_t)); +- memcpy(&g_crash_context_.context, uc, sizeof(struct ucontext)); ++ memcpy(&g_crash_context_.context, uc, sizeof(ucontext_t)); + #if defined(__aarch64__) +- struct ucontext* uc_ptr = (struct ucontext*)uc; ++ ucontext_t* uc_ptr = (ucontext_t*)uc; + struct fpsimd_context* fp_ptr = + (struct fpsimd_context*)&uc_ptr->uc_mcontext.__reserved; + if (fp_ptr->head.magic == FPSIMD_MAGIC) { +@@ -468,9 +468,9 @@ bool ExceptionHandler::HandleSignal(int /*sig*/, siginfo_t* info, void* uc) { + } + #elif !defined(__ARM_EABI__) && !defined(__mips__) + // FP state is not part of user ABI on ARM Linux. +- // In case of MIPS Linux FP state is already part of struct ucontext ++ // In case of MIPS Linux FP state is already part of ucontext_t + // and 'float_state' is not a member of CrashContext. +- struct ucontext* uc_ptr = (struct ucontext*)uc; ++ ucontext_t* uc_ptr = (ucontext_t*)uc; + if (uc_ptr->uc_mcontext.fpregs) { + memcpy(&g_crash_context_.float_state, uc_ptr->uc_mcontext.fpregs, + sizeof(g_crash_context_.float_state)); +@@ -494,7 +494,7 @@ bool ExceptionHandler::SimulateSignalDelivery(int sig) { + // ExceptionHandler::HandleSignal(). + siginfo.si_code = SI_USER; + siginfo.si_pid = getpid(); +- struct ucontext context; ++ ucontext_t context; + getcontext(&context); + return HandleSignal(sig, &siginfo, &context); + } +diff --git a/breakpad/src/client/linux/handler/exception_handler.h b/breakpad/src/client/linux/handler/exception_handler.h +index daba57e..25598a2 100644 +--- a/breakpad/src/client/linux/handler/exception_handler.h ++++ b/breakpad/src/client/linux/handler/exception_handler.h +@@ -191,11 +191,11 @@ class ExceptionHandler { + struct CrashContext { + siginfo_t siginfo; + pid_t tid; // the crashing thread. +- struct ucontext context; ++ ucontext_t context; + #if !defined(__ARM_EABI__) && !defined(__mips__) + // #ifdef this out because FP state is not part of user ABI for Linux ARM. + // In case of MIPS Linux FP state is already part of struct +- // ucontext so 'float_state' is not required. ++ // ucontext_t so 'float_state' is not required. + fpstate_t float_state; + #endif + }; +diff --git a/breakpad/src/client/linux/microdump_writer/microdump_writer.cc b/breakpad/src/client/linux/microdump_writer/microdump_writer.cc +index 3764eec..80ad5c4 100644 +--- a/breakpad/src/client/linux/microdump_writer/microdump_writer.cc ++++ b/breakpad/src/client/linux/microdump_writer/microdump_writer.cc +@@ -593,7 +593,7 @@ class MicrodumpWriter { + + void* Alloc(unsigned bytes) { return dumper_->allocator()->Alloc(bytes); } + +- const struct ucontext* const ucontext_; ++ const ucontext_t* const ucontext_; + #if !defined(__ARM_EABI__) && !defined(__mips__) + const google_breakpad::fpstate_t* const float_state_; + #endif +diff --git a/breakpad/src/client/linux/minidump_writer/minidump_writer.cc b/breakpad/src/client/linux/minidump_writer/minidump_writer.cc +index d11ba6e..c716143 100644 +--- a/breakpad/src/client/linux/minidump_writer/minidump_writer.cc ++++ b/breakpad/src/client/linux/minidump_writer/minidump_writer.cc +@@ -1323,7 +1323,7 @@ class MinidumpWriter { + const int fd_; // File descriptor where the minidum should be written. + const char* path_; // Path to the file where the minidum should be written. + +- const struct ucontext* const ucontext_; // also from the signal handler ++ const ucontext_t* const ucontext_; // also from the signal handler + #if !defined(__ARM_EABI__) && !defined(__mips__) + const google_breakpad::fpstate_t* const float_state_; // ditto + #endif diff --git a/pkgs/applications/networking/browsers/chromium/patches/chromium-gn-bootstrap-r17.patch b/pkgs/applications/networking/browsers/chromium/patches/chromium-gn-bootstrap-r17.patch new file mode 100644 index 000000000000..6cfd08d58c23 --- /dev/null +++ b/pkgs/applications/networking/browsers/chromium/patches/chromium-gn-bootstrap-r17.patch @@ -0,0 +1,68 @@ +--- a/tools/gn/bootstrap/bootstrap.py ++++ b/tools/gn/bootstrap/bootstrap.py +@@ -179,6 +179,7 @@ def build_gn_with_ninja_manually(tempdir, options): + + write_buildflag_header_manually(root_gen_dir, 'base/debug/debugging_flags.h', + { ++ 'ENABLE_LOCATION_SOURCE': 'false', + 'ENABLE_PROFILING': 'false', + 'CAN_UNWIND_WITH_FRAME_POINTERS': 'false' + }) +@@ -204,7 +205,7 @@ def build_gn_with_ninja_manually(tempdir, options): + + write_gn_ninja(os.path.join(tempdir, 'build.ninja'), + root_gen_dir, options) +- cmd = ['ninja', '-C', tempdir] ++ cmd = ['ninja', '-C', tempdir, '-w', 'dupbuild=err'] + if options.verbose: + cmd.append('-v') + +@@ -458,6 +459,7 @@ def write_gn_ninja(path, root_gen_dir, options): + 'base/metrics/bucket_ranges.cc', + 'base/metrics/field_trial.cc', + 'base/metrics/field_trial_param_associator.cc', ++ 'base/metrics/field_trial_params.cc', + 'base/metrics/histogram.cc', + 'base/metrics/histogram_base.cc', + 'base/metrics/histogram_functions.cc', +@@ -507,6 +509,7 @@ def write_gn_ninja(path, root_gen_dir, options): + 'base/task_scheduler/scheduler_lock_impl.cc', + 'base/task_scheduler/scheduler_single_thread_task_runner_manager.cc', + 'base/task_scheduler/scheduler_worker.cc', ++ 'base/task_scheduler/scheduler_worker_pool.cc', + 'base/task_scheduler/scheduler_worker_pool_impl.cc', + 'base/task_scheduler/scheduler_worker_pool_params.cc', + 'base/task_scheduler/scheduler_worker_stack.cc', +@@ -523,6 +526,7 @@ def write_gn_ninja(path, root_gen_dir, options): + 'base/third_party/icu/icu_utf.cc', + 'base/third_party/nspr/prtime.cc', + 'base/threading/post_task_and_reply_impl.cc', ++ 'base/threading/scoped_blocking_call.cc', + 'base/threading/sequence_local_storage_map.cc', + 'base/threading/sequenced_task_runner_handle.cc', + 'base/threading/sequenced_worker_pool.cc', +@@ -579,7 +583,6 @@ def write_gn_ninja(path, root_gen_dir, options): + 'base/unguessable_token.cc', + 'base/value_iterators.cc', + 'base/values.cc', +- 'base/value_iterators.cc', + 'base/vlog.cc', + ]) + +@@ -652,7 +655,6 @@ def write_gn_ninja(path, root_gen_dir, options): + static_libraries['base']['sources'].extend([ + 'base/memory/shared_memory_handle_posix.cc', + 'base/memory/shared_memory_posix.cc', +- 'base/memory/shared_memory_tracker.cc', + 'base/nix/xdg_util.cc', + 'base/process/internal_linux.cc', + 'base/process/memory_linux.cc', +@@ -827,7 +829,7 @@ def build_gn_with_gn(temp_gn, build_dir, options): + cmd = [temp_gn, 'gen', build_dir, '--args=%s' % gn_gen_args] + check_call(cmd) + +- cmd = ['ninja', '-C', build_dir] ++ cmd = ['ninja', '-C', build_dir, '-w', 'dupbuild=err'] + if options.verbose: + cmd.append('-v') + cmd.append('gn') diff --git a/pkgs/applications/networking/browsers/chromium/patches/chromium-gn-bootstrap-r19.patch b/pkgs/applications/networking/browsers/chromium/patches/chromium-gn-bootstrap-r19.patch new file mode 100644 index 000000000000..999fdb7eda76 --- /dev/null +++ b/pkgs/applications/networking/browsers/chromium/patches/chromium-gn-bootstrap-r19.patch @@ -0,0 +1,10 @@ +--- a/tools/gn/bootstrap/bootstrap.py ++++ b/tools/gn/bootstrap/bootstrap.py +@@ -576,7 +576,6 @@ def write_gn_ninja(path, root_gen_dir, options): + 'base/trace_event/trace_log.cc', + 'base/trace_event/trace_log_constants.cc', + 'base/trace_event/tracing_agent.cc', +- 'base/tracked_objects.cc', + 'base/unguessable_token.cc', + 'base/value_iterators.cc', + 'base/values.cc', diff --git a/pkgs/applications/networking/browsers/chromium/patches/chromium-sysroot-r1.patch b/pkgs/applications/networking/browsers/chromium/patches/chromium-sysroot-r1.patch new file mode 100644 index 000000000000..b5ff0d8cba11 --- /dev/null +++ b/pkgs/applications/networking/browsers/chromium/patches/chromium-sysroot-r1.patch @@ -0,0 +1,14 @@ +--- a/chrome/installer/BUILD.gn ++++ b/chrome/installer/BUILD.gn +@@ -3,9 +3,10 @@ + # found in the LICENSE file. + + import("//build/config/chrome_build.gni") ++import("//build/config/sysroot.gni") + + declare_args() { +- enable_linux_installer = is_linux && !is_component_build ++ enable_linux_installer = is_linux && !is_component_build && use_sysroot + } + + # Meta-target that forwards to the installer of the correct type (if any). diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix index ff349c8a5762..af4c30b431f6 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix @@ -1,18 +1,18 @@ # This file is autogenerated from update.sh in the same directory. { beta = { - sha256 = "09q7s5x22vnmvqyz0f1l6qnaryglmsp0rc63qcg5sfvgv2g17g5x"; - sha256bin64 = "12z6z8gjxl4mx8j6db8nnlzrj03rh4qwyrvcf4hqcsv7b1armg6j"; - version = "61.0.3163.79"; + sha256 = "0c8qn2i7iygl3kgrdwwd8h3l5j8hg66dw99qgr618cgca1b4im68"; + sha256bin64 = "04mfg18zpx19ha0mrlwx2aabn0vhl08n9c60hazivmw99pzlg8dn"; + version = "62.0.3202.29"; }; dev = { - sha256 = "168i6dcdl13an3vlr2m83q8fcprgckmclkmzwj70jdkp84qx80fq"; - sha256bin64 = "116vddp01m2ls337zj6r4h1nvybphvldlk9bs8czypx5skn29vbz"; - version = "62.0.3202.9"; + sha256 = "1zd7rid626fglbyrp7c6517jldhgfk3vjn357vhlhy6pgj1ydrrn"; + sha256bin64 = "0hqb5prf0ags4bnla6skyi5vmkrazhd8n3ri4ijhbqjbb536bfpb"; + version = "63.0.3218.0"; }; stable = { - sha256 = "09q7s5x22vnmvqyz0f1l6qnaryglmsp0rc63qcg5sfvgv2g17g5x"; - sha256bin64 = "0a0wd06c0v061lnmb8x20gqgsg9zqafp2kq1fl3cjm0ldg9rwayw"; - version = "61.0.3163.79"; + sha256 = "06r89jim9cq87668ya8wwk69hh17rl04cj94nb9c28v6mj69cda1"; + sha256bin64 = "1cm9snw29nkzq4bafqgi6fd0gqcc3jp60y6vfsrf9k4dvdard2sv"; + version = "61.0.3163.100"; }; } diff --git a/pkgs/applications/networking/browsers/falkon/default.nix b/pkgs/applications/networking/browsers/falkon/default.nix new file mode 100644 index 000000000000..715fefe17d83 --- /dev/null +++ b/pkgs/applications/networking/browsers/falkon/default.nix @@ -0,0 +1,43 @@ +{ stdenv, lib, fetchFromGitHub, cmake, extra-cmake-modules, pkgconfig, qmake +, libpthreadstubs, libxcb, libXdmcp, qtsvg, qttools, qtwebengine, qtx11extras, kwallet, openssl }: + +stdenv.mkDerivation rec { + # Last qupvilla release is 2.1.2 so we add the .1 although it isn't actually a + # release but it is basically 2.1.2 with the falkon name + name = "falkon-${version}.1"; + version = "2.1.2"; + + src = fetchFromGitHub { + owner = "KDE"; + repo = "falkon"; + rev = "eecaf2e9d6b572a7f7d2e6dc324e3d79b61c31db"; + sha256 = "01r5aw10jd0qz7xvad0cqzjbnsj7vwblh54wbq4x1m6xbkp6xcgy"; + }; + + preConfigure = '' + export NONBLOCK_JS_DIALOGS=true + export KDE_INTEGRATION=true + export GNOME_INTEGRATION=false + export FALKON_PREFIX=$out + ''; + + dontUseCmakeConfigure = true; + + buildInputs = [ + libpthreadstubs libxcb libXdmcp + kwallet + qtsvg qtwebengine qtx11extras + ]; + + nativeBuildInputs = [ cmake extra-cmake-modules pkgconfig qmake qttools ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "QtWebEngine based cross-platform web browser"; + homepage = https://community.kde.org/Incubator/Projects/Falkon; + license = licenses.gpl3; + maintainers = with maintainers; [ peterhoeg ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix index 79f56413f4cf..a73eaaea489d 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix @@ -1,955 +1,955 @@ { - version = "56.0b5"; + version = "57.0b5"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/56.0b5/linux-x86_64/ach/firefox-56.0b5.tar.bz2"; + { url 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"http://archive.mozilla.org/pub/firefox/releases/56.0/linux-i686/zh-TW/firefox-56.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha512 = "f40193e6390f143cac3cdc0c230fedf2e791792d16e8446becf2038b4916274b47522bf5f239454696a8cbfffbb001556ade3b1bee2bdd239843f3bc3448b03f"; + sha512 = "c1b058d91c7b8d242238bd8411bfb339e2712b6c550329bd06fac837faf453320310cf0d11597e9ca6d5d9abf084ad761a6701deeb6673547fcd60a094c6452f"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/no-buildconfig.patch b/pkgs/applications/networking/browsers/firefox/no-buildconfig.patch new file mode 100644 index 000000000000..83f9a1329bea --- /dev/null +++ b/pkgs/applications/networking/browsers/firefox/no-buildconfig.patch @@ -0,0 +1,25 @@ +diff -ru -x '*~' firefox-55.0.3-orig/docshell/base/nsAboutRedirector.cpp firefox-55.0.3/docshell/base/nsAboutRedirector.cpp +--- firefox-55.0.3-orig/docshell/base/nsAboutRedirector.cpp 2017-07-31 18:20:51.000000000 +0200 ++++ firefox-55.0.3/docshell/base/nsAboutRedirector.cpp 2017-09-26 22:02:00.814151731 +0200 +@@ -40,10 +40,6 @@ + nsIAboutModule::ALLOW_SCRIPT + }, + { +- "buildconfig", "chrome://global/content/buildconfig.html", +- nsIAboutModule::URI_SAFE_FOR_UNTRUSTED_CONTENT +- }, +- { + "checkerboard", "chrome://global/content/aboutCheckerboard.xhtml", + nsIAboutModule::URI_SAFE_FOR_UNTRUSTED_CONTENT | + nsIAboutModule::ALLOW_SCRIPT +diff -ru -x '*~' firefox-55.0.3-orig/toolkit/content/jar.mn firefox-55.0.3/toolkit/content/jar.mn +--- firefox-55.0.3-orig/toolkit/content/jar.mn 2017-07-31 18:20:52.000000000 +0200 ++++ firefox-55.0.3/toolkit/content/jar.mn 2017-09-26 22:01:42.383350314 +0200 +@@ -40,7 +40,6 @@ + content/global/plugins.css + content/global/browser-child.js + content/global/browser-content.js +-* content/global/buildconfig.html + content/global/contentAreaUtils.js + #ifndef MOZ_FENNEC + content/global/customizeToolbar.css diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 83eb563a8e7e..e2a8e201fef7 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -12,10 +12,12 @@ rec { sha512 = "3cacc87b97871f3a8c5e97c17ef7025079cb5c81f32377d9402cdad45815ac6c4c4762c79187f1e477910161c2377c42d41de62a50b6741d5d7c1cd70e8c6416"; }; - patches = lib.optional stdenv.isi686 (fetchpatch { - url = "https://hg.mozilla.org/mozilla-central/raw-rev/15517c5a5d37"; - sha256 = "1ba487p3hk4w2w7qqfxgv1y57vp86b8g3xhav2j20qd3j3phbbn7"; - }); + patches = + [ ./no-buildconfig.patch ] + ++ lib.optional stdenv.isi686 (fetchpatch { + url = "https://hg.mozilla.org/mozilla-central/raw-rev/15517c5a5d37"; + sha256 = "1ba487p3hk4w2w7qqfxgv1y57vp86b8g3xhav2j20qd3j3phbbn7"; + }); meta = { description = "A web browser built from Firefox source tree"; diff --git a/pkgs/applications/networking/browsers/firefox/wrapper.nix b/pkgs/applications/networking/browsers/firefox/wrapper.nix index 1dd5c9191f00..2413f1cfdca8 100644 --- a/pkgs/applications/networking/browsers/firefox/wrapper.nix +++ b/pkgs/applications/networking/browsers/firefox/wrapper.nix @@ -129,6 +129,8 @@ in stdenv.mkDerivation { passthru = { unwrapped = browser; }; + disallowedRequisites = [ stdenv.cc ]; + meta = browser.meta // { description = browser.meta.description diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix index 29a73beeec8f..c9c67c015992 100644 --- a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix +++ b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix @@ -98,7 +98,7 @@ let fteLibPath = makeLibraryPath [ stdenv.cc.cc gmp ]; # Upstream source - version = "7.0.5"; + version = "7.0.6"; lang = "en-US"; @@ -108,7 +108,7 @@ let "https://github.com/TheTorProject/gettorbrowser/releases/download/v${version}/tor-browser-linux64-${version}_${lang}.tar.xz" "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz" ]; - sha256 = "1ixa1pmh3fm82gwzkm7r3gbly1lrihpvk1irmpc8b8zsi2s49ghd"; + sha256 = "11z3r0577p78ifi9lk4lrh9wb46k77wy77g5p9l8il02760bgq6m"; }; "i686-linux" = fetchurl { @@ -116,7 +116,7 @@ let "https://github.com/TheTorProject/gettorbrowser/releases/download/v${version}/tor-browser-linux32-${version}_${lang}.tar.xz" "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux32-${version}_${lang}.tar.xz" ]; - sha256 = "1kb0m4xikxcgj03h6l0ch5d53i8hxdacwm7q745a377g44q84nzb"; + sha256 = "1r8v5w66clmm76kzpkf0f5jcxs76whb5xrl20rkirp79fybqn4hx"; }; }; in diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle/default.nix b/pkgs/applications/networking/browsers/tor-browser-bundle/default.nix new file mode 100644 index 000000000000..508ab6ec432e --- /dev/null +++ b/pkgs/applications/networking/browsers/tor-browser-bundle/default.nix @@ -0,0 +1,348 @@ +{ stdenv +, fetchgit +, fetchurl +, symlinkJoin + +, tor +, tor-browser-unwrapped + +# Wrapper runtime +, coreutils +, hicolor_icon_theme +, shared_mime_info +, noto-fonts +, noto-fonts-emoji + +# Audio support +, audioSupport ? mediaSupport +, apulse + +# Media support (implies audio support) +, mediaSupport ? false +, gstreamer +, gst-plugins-base +, gst-plugins-good +, gst-ffmpeg +, gmp +, ffmpeg + +# Extensions, common +, zip + +# HTTPS Everywhere +, git +, libxml2 # xmllint +, python27 +, python27Packages +, rsync + +# Pluggable transports +, obfsproxy + +# Customization +, extraPrefs ? "" +, extraExtensions ? [ ] +}: + +with stdenv.lib; + +let + tor-browser-build_src = fetchgit { + url = "https://git.torproject.org/builders/tor-browser-build.git"; + rev = "refs/tags/tbb-7.5a5-build5"; + sha256 = "0j37mqldj33fnzghxifvy6v8vdwkcz0i4z81prww64md5s8qcsa9"; + }; + + firefoxExtensions = import ./extensions.nix { + inherit stdenv fetchurl fetchgit zip + git libxml2 python27 python27Packages rsync; + }; + + bundledExtensions = with firefoxExtensions; [ + https-everywhere + noscript + torbutton + tor-launcher + ] ++ extraExtensions; + + fontsEnv = symlinkJoin { + name = "tor-browser-fonts"; + paths = [ noto-fonts noto-fonts-emoji ]; + }; + + fontsDir = "${fontsEnv}/share/fonts"; + + gstPluginsPath = concatMapStringsSep ":" (x: + "${x}/lib/gstreamer-0.10") [ + gstreamer + gst-plugins-base + gst-plugins-good + gst-ffmpeg + ]; + + gstLibPath = makeLibraryPath [ + gstreamer + gst-plugins-base + gmp + ffmpeg + ]; +in +stdenv.mkDerivation rec { + name = "tor-browser-bundle-${version}"; + version = tor-browser-unwrapped.version; + + buildInputs = [ tor-browser-unwrapped tor ]; + + unpackPhase = ":"; + + buildPhase = ":"; + + # The following creates a customized firefox distribution. For + # simplicity, we copy the entire base firefox runtime, to work around + # firefox's annoying insistence on resolving the installation directory + # relative to the real firefox executable. A little tacky and + # inefficient but it works. + installPhase = '' + TBBUILD=${tor-browser-build_src}/projects/tor-browser + TBDATA_PATH=TorBrowser-Data + + self=$out/lib/tor-browser + mkdir -p $self && cd $self + + TBDATA_IN_STORE=$self/$TBDATA_PATH + + cp -dR ${tor-browser-unwrapped}/lib"/"*"/"* . + chmod -R +w . + + # Prepare for autoconfig + cat >defaults/pref/autoconfig.js <<EOF + pref("general.config.filename", "mozilla.cfg"); + pref("general.config.obscure_value", 0); + EOF + + # Hardcoded configuration + cat >mozilla.cfg <<EOF + // First line must be a comment + + // Always update via Nixpkgs + lockPref("app.update.auto", false); + lockPref("app.update.enabled", false); + lockPref("extensions.update.autoUpdateDefault", false); + lockPref("extensions.update.enabled", false); + lockPref("extensions.torbutton.updateNeeded", false); + lockPref("extensions.torbutton.versioncheck_enabled", false); + + // Where to find the Nixpkgs tor executable & config + lockPref("extensions.torlauncher.tor_path", "${tor}/bin/tor"); + lockPref("extensions.torlauncher.torrc-defaults_path", "$TBDATA_IN_STORE/torrc-defaults"); + + // Captures store paths + clearPref("extensions.xpiState"); + clearPref("extensions.bootstrappedAddons"); + + // Insist on using IPC for communicating with Tor + lockPref("extensions.torlauncher.control_port_use_ipc", true); + lockPref("extensions.torlauncher.socks_port_use_ipc", true); + + // Allow sandbox access to sound devices if using ALSA directly + ${if audioSupport then '' + pref("security.sandbox.content.write_path_whitelist", "/dev/snd/"); + '' else '' + clearPref("security.sandbox.content.write_path_whitelist"); + ''} + + // User customization + ${extraPrefs} + EOF + + # Preload extensions + find ${toString bundledExtensions} -name '*.xpi' -exec ln -s -t browser/extensions '{}' '+' + + # Copy bundle data + bundlePlatform=linux + bundleData=$TBBUILD/Bundle-Data + + mkdir -p $TBDATA_PATH + cat \ + $bundleData/$bundlePlatform/Data/Tor/torrc-defaults \ + >> $TBDATA_PATH/torrc-defaults + cat \ + $bundleData/$bundlePlatform/Data/Browser/profile.default/preferences/extension-overrides.js \ + $bundleData/PTConfigs/bridge_prefs.js \ + >> defaults/pref/extension-overrides.js + + # Configure geoip + # + # tor-launcher insists on resolving geoip data relative to torrc-defaults + # (and passes them directly on the tor command-line). + # + # Write the paths into torrc-defaults anyway, otherwise they'll be + # captured in the runtime torrc. + ln -s -t $TBDATA_PATH ${tor.geoip}/share/tor/geoip{,6} + cat >>$TBDATA_PATH/torrc-defaults <<EOF + GeoIPFile $TBDATA_IN_STORE/geoip + GeoIPv6File $TBDATA_IN_STORE/geoip6 + EOF + + # Configure pluggable transports + cat >>$TBDATA_PATH/torrc-defaults <<EOF + ClientTransportPlugin obfs2,obfs3 exec ${obfsproxy}/bin/obfsproxy managed + EOF + + # Hard-code path to TBB fonts; xref: FONTCONFIG_FILE in the wrapper below + sed $bundleData/$bundlePlatform/Data/fontconfig/fonts.conf \ + -e "s,<dir>fonts</dir>,<dir>${fontsDir}</dir>," \ + > $TBDATA_PATH/fonts.conf + + # Generate a suitable wrapper + wrapper_PATH=${makeBinPath [ coreutils ]} + wrapper_XDG_DATA_DIRS=${concatMapStringsSep ":" (x: "${x}/share") [ + hicolor_icon_theme + shared_mime_info + ]} + + ${optionalString audioSupport '' + # apulse uses a non-standard library path ... + wrapper_LD_LIBRARY_PATH=${apulse}/lib/apulse''${wrapper_LD_LIBRARY_PATH:+:$wrapper_LD_LIBRARY_PATH} + ''} + + ${optionalString mediaSupport '' + wrapper_LD_LIBRARY_PATH=${gstLibPath}''${wrapper_LD_LIBRARY_PATH:+:$wrapper_LD_LIBRARY_PATH} + ''} + + mkdir -p $out/bin + cat >$out/bin/tor-browser <<EOF + #! ${stdenv.shell} -eu + + umask 077 + + PATH=$wrapper_PATH + + readonly THE_HOME=\$HOME + TBB_HOME=\''${TBB_HOME:-\''${XDG_DATA_HOME:-\$HOME/.local/share}/tor-browser} + if [[ \''${TBB_HOME:0:1} != / ]] ; then + TBB_HOME=\$PWD/\$TBB_HOME + fi + readonly TBB_HOME + + # Basic sanity check: never want to vomit directly onto user's homedir + if [[ "\$TBB_HOME" = "\$THE_HOME" ]] ; then + echo 'TBB_HOME=\$HOME; refusing to run' >&2 + exit 1 + fi + + mkdir -p "\$TBB_HOME" + + HOME=\$TBB_HOME + cd "\$HOME" + + # Re-init XDG basedir envvars + XDG_CACHE_HOME=\$HOME/.cache + XDG_CONFIG_HOME=\$HOME/.config + XDG_DATA_HOME=\$HOME/.local/share + + # Initialize empty TBB runtime state directory hierarchy. Mirror the + # layout used by the official TBB, to avoid the hassle of working + # against the assumptions made by tor-launcher & co. + mkdir -p "\$HOME/TorBrowser" "\$HOME/TorBrowser/Data" + + # Initialize the Tor data directory. + mkdir -p "\$HOME/TorBrowser/Data/Tor" + + # TBB fails if ownership is too permissive + chmod 0700 "\$HOME/TorBrowser/Data/Tor" + + # Initialize the browser profile state. Expect TBB to generate all data. + mkdir -p "\$HOME/TorBrowser/Data/Browser/profile.default" + + # Files that capture store paths; re-generated by firefox at startup + rm -rf "\$HOME/TorBrowser/Data/Browser/profile.default"/{compatibility.ini,extensions.ini,extensions.json,startupCache} + + # Clear out fontconfig caches + rm -f "\$HOME/.cache/fontconfig/"*.cache-* + + # Lift-off! + # + # TZ is set to avoid stat()ing /etc/localtime over and over ... + # + # DBUS_SESSION_BUS_ADDRESS is inherited to avoid auto-launching a new + # dbus instance; to prevent using the session bus, set the envvar to + # an empty/invalid value prior to running tor-browser. + # + # FONTCONFIG_FILE is required to make fontconfig read the TBB + # fonts.conf; upstream uses FONTCONFIG_PATH, but FC_DEBUG=1024 + # indicates the system fonts.conf being used instead. + # + # HOME, TMPDIR, XDG_*_HOME are set as a form of soft confinement; + # ideally, tor-browser should not write to any path outside TBB_HOME + # and should run even under strict confinement to TBB_HOME. + # + # XDG_DATA_DIRS is set to prevent searching system directories for + # mime and icon data. + # + # PULSE_{SERVER,COOKIE} is necessary for audio playback w/pulseaudio + # + # APULSE_PLAYBACK_DEVICE is for audio playback w/o pulseaudio (no capture yet) + # + # GST_PLUGIN_SYSTEM_PATH is for HD video playback + # + # GST_REGISTRY is set to devnull to minimize disk writes + # + # TOR_* is for using an external tor instance + # + # Parameters lacking a default value below are *required* (enforced by + # -o nounset). + exec env -i \ + LD_LIBRARY_PATH=$wrapper_LD_LIBRARY_PATH \ + \ + TZ=":" \ + \ + DISPLAY="\$DISPLAY" \ + XAUTHORITY="\$XAUTHORITY" \ + DBUS_SESSION_BUS_ADDRESS="\$DBUS_SESSION_BUS_ADDRESS" \ + \ + HOME="\$HOME" \ + TMPDIR="\$XDG_CACHE_HOME/tmp" \ + XDG_CONFIG_HOME="\$XDG_CONFIG_HOME" \ + XDG_DATA_HOME="\$XDG_DATA_HOME" \ + XDG_CACHE_HOME="\$XDG_CACHE_HOME" \ + XDG_RUNTIME_DIR="\$HOME/run" \ + \ + XDG_DATA_DIRS="$wrapper_XDG_DATA_DIRS" \ + \ + FONTCONFIG_FILE="$TBDATA_IN_STORE/fonts.conf" \ + \ + APULSE_PLAYBACK_DEVICE="\''${APULSE_PLAYBACK_DEVICE:-plug:dmix}" \ + \ + GST_PLUGIN_SYSTEM_PATH="${optionalString mediaSupport gstPluginsPath}" \ + GST_REGISTRY="/dev/null" \ + GST_REGISTRY_UPDATE="no" \ + \ + TOR_SKIP_LAUNCH="\''${TOR_SKIP_LAUNCH:-}" \ + TOR_CONTROL_PORT="\''${TOR_CONTROL_PORT:-}" \ + TOR_SOCKS_PORT="\''${TOR_SOCKS_PORT:-}" \ + \ + $self/firefox \ + -no-remote \ + -profile "\$HOME/TorBrowser/Data/Browser/profile.default" \ + "\$@" + EOF + chmod +x $out/bin/tor-browser + + echo "Syntax checking wrapper ..." + bash -n $out/bin/tor-browser + + echo "Checking wrapper ..." + DISPLAY="" XAUTHORITY="" DBUS_SESSION_BUS_ADDRESS="" TBB_HOME=$(mktemp -d) \ + $out/bin/tor-browser -version >/dev/null + ''; + + meta = with stdenv.lib; { + description = "An unofficial version of the tor browser bundle, built from source"; + homepage = https://torproject.org/; + license = licenses.unfreeRedistributable; # TODO: check this + platforms = [ "x86_64-linux" ]; + hydraPlatforms = [ ]; + maintainers = with maintainers; [ joachifm ]; + }; +} diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle/extensions.nix b/pkgs/applications/networking/browsers/tor-browser-bundle/extensions.nix new file mode 100644 index 000000000000..53c278bc0650 --- /dev/null +++ b/pkgs/applications/networking/browsers/tor-browser-bundle/extensions.nix @@ -0,0 +1,111 @@ +{ stdenv +, fetchgit +, fetchurl + +# common +, zip + +# HTTPS Everywhere +, git +, libxml2 # xmllint +, python27 +, python27Packages +, rsync +}: + +{ + https-everywhere = stdenv.mkDerivation rec { + name = "https-everywhere-${version}"; + version = "2017.9.12"; + + extid = "https-everywhere-eff@eff.org"; + + src = fetchgit { + url = "https://git.torproject.org/https-everywhere.git"; + rev = "refs/tags/${version}"; + sha256 = "179429pngyksp9xkr86nf2m5q6zmg19c7ng1dhqjfb1vsncwgw66"; + fetchSubmodules = true; # for translations, TODO: remove + }; + + nativeBuildInputs = [ + git + libxml2 # xmllint + python27 + python27Packages.lxml + rsync + zip + ]; + + buildPhase = '' + $shell ./makexpi.sh ${version} --no-recurse + ''; + + installPhase = '' + install -m 444 -D pkg/https-everywhere-$version-eff.xpi "$out/$extid.xpi" + ''; + }; + + noscript = stdenv.mkDerivation rec { + name = "noscript-${version}"; + version = "5.0.10"; + + extid = "{73a6fe31-595d-460b-a920-fcc0f8843232}"; + + src = fetchurl { + url = "https://secure.informaction.com/download/releases/noscript-${version}.xpi"; + sha256 = "18k5karbaj5mhd9cyjbqgik6044bw88rjalkh6anjanxbn503j6g"; + }; + + unpackPhase = ":"; + + installPhase = '' + install -m 444 -D $src "$out/$extid.xpi" + ''; + }; + + torbutton = stdenv.mkDerivation rec { + name = "torbutton-${version}"; + version = "1.9.8.1"; + + extid = "torbutton@torproject.org"; + + src = fetchgit { + url = "https://git.torproject.org/torbutton.git"; + rev = "refs/tags/${version}"; + sha256 = "1amp0c9ky0a7fsa0bcbi6n6ginw7s2g3an4rj7kvc1lxmrcsm65l"; + }; + + nativeBuildInputs = [ zip ]; + + buildPhase = '' + $shell ./makexpi.sh + ''; + + installPhase = '' + install -m 444 -D pkg/torbutton-$version.xpi "$out/$extid.xpi" + ''; + }; + + tor-launcher = stdenv.mkDerivation rec { + name = "tor-launcher-${version}"; + version = "0.2.12.3"; + + extid = "tor-launcher@torproject.org"; + + src = fetchgit { + url = "https://git.torproject.org/tor-launcher.git"; + rev = "refs/tags/${version}"; + sha256 = "0126x48pjiy2zm4l8jzhk70w24hviaz560ffp4lb9x0ar615bc9q"; + }; + + nativeBuildInputs = [ zip ]; + + buildPhase = '' + make package + ''; + + installPhase = '' + install -m 444 -D pkg/tor-launcher-$version.xpi "$out/$extid.xpi" + ''; + }; +} diff --git a/pkgs/applications/networking/browsers/vivaldi/chromium-gcc-r1.patch b/pkgs/applications/networking/browsers/vivaldi/chromium-gcc-r1.patch new file mode 100644 index 000000000000..036d57b601da --- /dev/null +++ b/pkgs/applications/networking/browsers/vivaldi/chromium-gcc-r1.patch @@ -0,0 +1,14 @@ +diff --git a/base/numerics/safe_math_shared_impl.h b/base/numerics/safe_math_shared_impl.h +index 99f230ce7e9a..de2415d402f5 100644 +--- a/base/numerics/safe_math_shared_impl.h ++++ b/base/numerics/safe_math_shared_impl.h +@@ -21,8 +21,7 @@ + #if !defined(__native_client__) && \ + ((defined(__clang__) && \ + ((__clang_major__ > 3) || \ +- (__clang_major__ == 3 && __clang_minor__ >= 4))) || \ +- (defined(__GNUC__) && __GNUC__ >= 5)) ++ (__clang_major__ == 3 && __clang_minor__ >= 4)))) + #include "base/numerics/safe_math_clang_gcc_impl.h" + #define BASE_HAS_OPTIMIZED_SAFE_MATH (1) + #else \ No newline at end of file diff --git a/pkgs/applications/networking/browsers/vivaldi/chromium-gcc5-r1.patch b/pkgs/applications/networking/browsers/vivaldi/chromium-gcc5-r1.patch new file mode 100644 index 000000000000..8d2886fbfa94 --- /dev/null +++ b/pkgs/applications/networking/browsers/vivaldi/chromium-gcc5-r1.patch @@ -0,0 +1,66 @@ +--- a/chrome/browser/devtools/devtools_file_system_indexer.cc ++++ b/chrome/browser/devtools/devtools_file_system_indexer.cc +@@ -34,7 +34,6 @@ using base::TimeDelta; + using base::TimeTicks; + using content::BrowserThread; + using std::map; +-using std::set; + using std::string; + using std::vector; + +@@ -191,7 +190,7 @@ vector<FilePath> Index::Search(const string& query) { + if (trigram != kUndefinedTrigram) + trigrams.push_back(trigram); + } +- set<FileId> file_ids; ++ std::set<FileId> file_ids; + bool first = true; + vector<Trigram>::const_iterator it = trigrams.begin(); + for (; it != trigrams.end(); ++it) { +@@ -203,7 +202,7 @@ vector<FilePath> Index::Search(const string& query) { + first = false; + continue; + } +- set<FileId> intersection = base::STLSetIntersection<set<FileId> >( ++ std::set<FileId> intersection = base::STLSetIntersection<std::set<FileId> >( + file_ids, index_[trigram]); + file_ids.swap(intersection); + } +diff --git a/third_party/WebKit/Source/platform/wtf/typed_arrays/ArrayBufferContents.h b/third_party/WebKit/Source/platform/wtf/typed_arrays/ArrayBufferContents.h +index 94bb9161ec85..e40c6387f72e 100644 +--- a/third_party/WebKit/Source/platform/wtf/typed_arrays/ArrayBufferContents.h ++++ b/third_party/WebKit/Source/platform/wtf/typed_arrays/ArrayBufferContents.h +@@ -63,7 +63,7 @@ class WTF_EXPORT ArrayBufferContents { + allocation_length_(0), + data_(data), + data_length_(0), +- kind_(AllocationKind::kNormal), ++ kind_(WTF::ArrayBufferContents::AllocationKind::kNormal), + deleter_(deleter) {} + DataHandle(void* allocation_base, + size_t allocation_length, +@@ -94,11 +94,11 @@ class WTF_EXPORT ArrayBufferContents { + reinterpret_cast<uintptr_t>(allocation_base_) + + allocation_length_); + switch (kind_) { +- case AllocationKind::kNormal: ++ case WTF::ArrayBufferContents::AllocationKind::kNormal: + DCHECK(deleter_); + deleter_(data_); + return; +- case AllocationKind::kReservation: ++ case WTF::ArrayBufferContents::AllocationKind::kReservation: + ReleaseReservedMemory(allocation_base_, allocation_length_); + return; + } +--- a/third_party/webrtc/modules/audio_processing/aec3/aec_state.cc.orig 2017-08-15 12:45:59.433532111 +0000 ++++ b/third_party/webrtc/modules/audio_processing/aec3/aec_state.cc 2017-08-15 17:52:59.691328825 +0000 +@@ -10,7 +10,7 @@ + + #include "webrtc/modules/audio_processing/aec3/aec_state.h" + +-#include <math.h> ++#include <cmath> + #include <numeric> + #include <vector> + \ No newline at end of file diff --git a/pkgs/applications/networking/browsers/vivaldi/chromium-gn-bootstrap-r14.patch b/pkgs/applications/networking/browsers/vivaldi/chromium-gn-bootstrap-r14.patch new file mode 100644 index 000000000000..624267153669 --- /dev/null +++ b/pkgs/applications/networking/browsers/vivaldi/chromium-gn-bootstrap-r14.patch @@ -0,0 +1,27 @@ +commit 96c271f8ab2be7ea4199078ea65ac50c6ada4685 +Author: Pawel Hajdan, Jr <phajdan.jr@chromium.org> +Date: Wed Jul 26 21:51:54 2017 +0000 + + wip + +diff --git a/tools/gn/bootstrap/bootstrap.py b/tools/gn/bootstrap/bootstrap.py +index 1390560f8e37..ff2ae57c46b0 100755 +--- a/tools/gn/bootstrap/bootstrap.py ++++ b/tools/gn/bootstrap/bootstrap.py +@@ -449,6 +449,7 @@ def write_gn_ninja(path, root_gen_dir, options): + 'base/metrics/histogram_base.cc', + 'base/metrics/histogram_functions.cc', + 'base/metrics/histogram_samples.cc', ++ 'base/metrics/histogram_snapshot_manager.cc', + 'base/metrics/metrics_hashes.cc', + 'base/metrics/persistent_histogram_allocator.cc', + 'base/metrics/persistent_memory_allocator.cc', +@@ -534,7 +535,7 @@ def write_gn_ninja(path, root_gen_dir, options): + 'base/trace_event/heap_profiler_allocation_context_tracker.cc', + 'base/trace_event/heap_profiler_allocation_register.cc', + 'base/trace_event/heap_profiler_event_filter.cc', +- 'base/trace_event/heap_profiler_event_writer.cc', ++ 'base/trace_event/heap_profiler_heap_dump_writer.cc', + 'base/trace_event/heap_profiler_serialization_state.cc', + 'base/trace_event/heap_profiler_stack_frame_deduplicator.cc', + 'base/trace_event/heap_profiler_type_name_deduplicator.cc', \ No newline at end of file diff --git a/pkgs/applications/networking/browsers/vivaldi/chromium-gn-bootstrap-r8.patch b/pkgs/applications/networking/browsers/vivaldi/chromium-gn-bootstrap-r8.patch deleted file mode 100644 index d9f389aaf588..000000000000 --- a/pkgs/applications/networking/browsers/vivaldi/chromium-gn-bootstrap-r8.patch +++ /dev/null @@ -1,13 +0,0 @@ -Index: tools/gn/bootstrap/bootstrap.py -diff --git a/tools/gn/bootstrap/bootstrap.py b/tools/gn/bootstrap/bootstrap.py -index 6f2f5b1264519ea38cc36fb0b7e2cc24c378ca7a..0b03d2626b358fb90ab39d737679ee47bd60303b 100755 ---- a/tools/gn/bootstrap/bootstrap.py -+++ b/tools/gn/bootstrap/bootstrap.py -@@ -487,6 +487,7 @@ def write_gn_ninja(path, root_gen_dir, options): - 'base/sys_info.cc', - 'base/task_runner.cc', - 'base/task_scheduler/delayed_task_manager.cc', -+ 'base/task_scheduler/environment_config.cc', - 'base/task_scheduler/post_task.cc', - 'base/task_scheduler/priority_queue.cc', - 'base/task_scheduler/scheduler_lock_impl.cc', diff --git a/pkgs/applications/networking/browsers/vivaldi/default.nix b/pkgs/applications/networking/browsers/vivaldi/default.nix index a1238cb5964f..5fc4ca8bd531 100644 --- a/pkgs/applications/networking/browsers/vivaldi/default.nix +++ b/pkgs/applications/networking/browsers/vivaldi/default.nix @@ -13,11 +13,11 @@ stdenv.mkDerivation rec { name = "${product}-${version}"; product = "vivaldi"; - version = "1.11.917.39-1"; + version = "1.12.955.36-1"; src = fetchurl { url = "https://downloads.vivaldi.com/stable/${product}-stable_${version}_amd64.deb"; - sha256 = "0rsggp4ayj462g217zb9y9grhvbrcxa51a77l8l4qzhd9lg7zvx6"; + sha256 = "0fh6v4byqvyywlf9xsxn78kfypcqsmf4vypv5mwxh5nrpwim4xqj"; }; unpackPhase = '' diff --git a/pkgs/applications/networking/browsers/vivaldi/ffmpeg-codecs.nix b/pkgs/applications/networking/browsers/vivaldi/ffmpeg-codecs.nix index b8b6bde50a40..542bcbc41b0d 100644 --- a/pkgs/applications/networking/browsers/vivaldi/ffmpeg-codecs.nix +++ b/pkgs/applications/networking/browsers/vivaldi/ffmpeg-codecs.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { name = "${product}-${version}"; product = "vivaldi-ffmpeg-codecs"; - version = "60.0.3112.90"; + version = "61.0.3163.91"; src = fetchurl { url = "https://commondatastorage.googleapis.com/chromium-browser-official/chromium-${version}.tar.xz"; - sha512 = "2p7pjjsxpglxjmh0asyykagqh33ccrjwj4b2aski4h31wkxv9b9najy8aqk6j1bi06n9wd35vis4hz4fr6kvgckllg1pjqrb3bpwmq5"; + sha512 = "3f07vwbxllrwy3agqxa6ndcix23vai18i178zscmk0y68flhzffyjdvrwlg7dzlwgiqypj2cyl21qb4qmcay2ilgw9vnr9fql2x0w7p"; }; buildInputs = [ ]; @@ -21,7 +21,9 @@ stdenv.mkDerivation rec { ]; patches = [ - ./chromium-gn-bootstrap-r8.patch + ./chromium-gn-bootstrap-r14.patch + ./chromium-gcc-r1.patch + ./chromium-gcc5-r1.patch ]; configurePhase = '' @@ -51,5 +53,6 @@ stdenv.mkDerivation rec { license = licenses.lgpl21; maintainers = with maintainers; [ lluchs ]; platforms = [ "x86_64-linux" ]; + broken = true; }; } diff --git a/pkgs/applications/networking/cluster/mesos/default.nix b/pkgs/applications/networking/cluster/mesos/default.nix index 0506f7c154d2..116e74326908 100644 --- a/pkgs/applications/networking/cluster/mesos/default.nix +++ b/pkgs/applications/networking/cluster/mesos/default.nix @@ -1,9 +1,9 @@ -{ stdenv, lib, makeWrapper, fetchurl, curl, sasl, openssh, autoconf -, automake, libtool, unzip, gnutar, jdk, maven, python, wrapPython +{ stdenv, lib, makeWrapper, fetchurl, curl, sasl, openssh +, unzip, gnutar, jdk, python, wrapPython , setuptools, boto, pythonProtobuf, apr, subversion, gzip, systemd , leveldb, glog, perf, utillinux, libnl, iproute, openssl, libevent -, ethtool, coreutils, which, iptables -, bash +, ethtool, coreutils, which, iptables, maven +, bash, autoreconfHook }: let @@ -21,7 +21,7 @@ let }); in stdenv.mkDerivation rec { - version = "1.1.1"; + version = "1.4.0"; name = "mesos-${version}"; enableParallelBuilding = true; @@ -29,7 +29,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "mirror://apache/mesos/${version}/${name}.tar.gz"; - sha256 = "0f46ebb130d2d4a9732f95d0a71d80c8c5967f3c172b110f2ece316e05922115"; + sha256 = "0c08kd226nrjwm2z2drpq4vi97h9r8b1xkdvkgh1114fxg7cyvys"; }; patches = [ @@ -40,11 +40,13 @@ in stdenv.mkDerivation rec { # see https://github.com/cstrahan/mesos/tree/nixos-${version} ./nixos.patch ]; - + nativeBuildInputs = [ + autoreconfHook + ]; buildInputs = [ - makeWrapper autoconf automake libtool curl sasl jdk maven + makeWrapper curl sasl jdk python wrapPython boto setuptools leveldb - subversion apr glog openssl libevent + subversion apr glog openssl libevent maven ] ++ lib.optionals stdenv.isLinux [ libnl ]; @@ -52,10 +54,6 @@ in stdenv.mkDerivation rec { propagatedBuildInputs = [ pythonProtobuf ]; - - # note that we *must* statically link libprotobuf. - # if we dynamically link the lib, we get these errors: - # https://github.com/NixOS/nixpkgs/pull/19064#issuecomment-255082684 preConfigure = '' # https://issues.apache.org/jira/browse/MESOS-6616 configureFlagsArray+=( @@ -66,13 +64,12 @@ in stdenv.mkDerivation rec { # <sys/types.h> instead of <sys/sysmacros.h> sed 1i'#include <sys/sysmacros.h>' -i src/linux/fs.cpp sed 1i'#include <sys/sysmacros.h>' -i src/slave/containerizer/mesos/isolators/gpu/isolator.cpp - substituteInPlace 3rdparty/stout/include/stout/os/posix/chown.hpp \ --subst-var-by chown ${coreutils}/bin/chown substituteInPlace 3rdparty/stout/Makefile.am \ --replace "-lprotobuf" \ - "${pythonProtobuf.protobuf}/lib/libprotobuf.so" + "${pythonProtobuf.protobuf}/lib/libprotobuf.a" substituteInPlace 3rdparty/stout/include/stout/os/posix/fork.hpp \ --subst-var-by sh ${bash}/bin/bash @@ -100,7 +97,7 @@ in stdenv.mkDerivation rec { substituteInPlace src/python/native_common/ext_modules.py.in \ --replace "-lprotobuf" \ - "${pythonProtobuf.protobuf}/lib/libprotobuf.so" + "${pythonProtobuf.protobuf}/lib/libprotobuf.a" substituteInPlace src/slave/containerizer/mesos/isolators/gpu/volume.cpp \ --subst-var-by cp ${coreutils}/bin/cp \ @@ -125,7 +122,7 @@ in stdenv.mkDerivation rec { substituteInPlace src/Makefile.am \ --subst-var-by mavenRepo ${mavenRepo} \ --replace "-lprotobuf" \ - "${pythonProtobuf.protobuf}/lib/libprotobuf.so" + "${pythonProtobuf.protobuf}/lib/libprotobuf.a" '' + lib.optionalString stdenv.isLinux '' @@ -179,7 +176,7 @@ in stdenv.mkDerivation rec { "--enable-libevent" "--with-libevent=${libevent.dev}" "--with-protobuf=${pythonProtobuf.protobuf}" - "PROTOBUF_JAR=${mavenRepo}/com/google/protobuf/protobuf-java/2.6.1/protobuf-java-2.6.1.jar" + "PROTOBUF_JAR=${mavenRepo}/com/google/protobuf/protobuf-java/3.3.0/protobuf-java-3.3.0.jar" ] ++ lib.optionals stdenv.isLinux [ "--with-network-isolator" "--with-nl=${libnl.dev}" diff --git a/pkgs/applications/networking/cluster/mesos/fetch-mesos-deps.sh b/pkgs/applications/networking/cluster/mesos/fetch-mesos-deps.sh index f4a4588dbe41..cf7318ecb273 100644 --- a/pkgs/applications/networking/cluster/mesos/fetch-mesos-deps.sh +++ b/pkgs/applications/networking/cluster/mesos/fetch-mesos-deps.sh @@ -1127,10 +1127,12 @@ fetchArtifact org/vafer/jdependency/0.7/jdependency-0.7.pom fetchArtifact org/vafer/jdependency/0.7/jdependency-0.7.pom.sha1 fetchArtifact org/vafer/jdependency/0.7/jdependency-0.7.jar fetchArtifact org/vafer/jdependency/0.7/jdependency-0.7.jar.sha1 -fetchArtifact com/google/protobuf/protobuf-java/2.6.1/protobuf-java-2.6.1.pom -fetchArtifact com/google/protobuf/protobuf-java/2.6.1/protobuf-java-2.6.1.pom.sha1 -fetchArtifact com/google/protobuf/protobuf-java/2.6.1/protobuf-java-2.6.1.jar -fetchArtifact com/google/protobuf/protobuf-java/2.6.1/protobuf-java-2.6.1.jar.sha1 +fetchArtifact com/google/protobuf/protobuf-java/3.3.0/protobuf-java-3.3.0.pom +fetchArtifact com/google/protobuf/protobuf-java/3.3.0/protobuf-java-3.3.0.pom.sha1 +fetchArtifact com/google/protobuf/protobuf-java/3.3.0/protobuf-java-3.3.0.jar +fetchArtifact com/google/protobuf/protobuf-java/3.3.0/protobuf-java-3.3.0.jar.sha1 +fetchArtifact com/google/protobuf/protobuf-parent/3.3.0/protobuf-parent-3.3.0.pom +fetchArtifact com/google/protobuf/protobuf-parent/3.3.0/protobuf-parent-3.3.0.pom.sha1 fetchArtifact com/google/google/1/google-1.pom fetchArtifact com/google/google/1/google-1.pom.sha1 fetchArtifact com/google/guava/guava/11.0.2/guava-11.0.2.pom diff --git a/pkgs/applications/networking/cluster/mesos/mesos-deps.nix b/pkgs/applications/networking/cluster/mesos/mesos-deps.nix index 1edb4a755d89..642c660edb69 100644 --- a/pkgs/applications/networking/cluster/mesos/mesos-deps.nix +++ b/pkgs/applications/networking/cluster/mesos/mesos-deps.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation { outputHashAlgo = "sha256"; outputHashMode = "recursive"; - outputHash = "066ikswavq3l37x1s3pfdncyj77pvpa0kj14ax5dqb9njmsg0s11"; + outputHash = "10h0qs7svw0cqjkyxs8z6s3qraa8ga920zfrr59rdlanbwg4klly"; buildInputs = [ curl ]; diff --git a/pkgs/applications/networking/cluster/mesos/nixos.patch b/pkgs/applications/networking/cluster/mesos/nixos.patch index 78e374b8d6bc..a6fea024b087 100644 --- a/pkgs/applications/networking/cluster/mesos/nixos.patch +++ b/pkgs/applications/networking/cluster/mesos/nixos.patch @@ -1,20 +1,7 @@ -diff --git a/3rdparty/stout/include/stout/os/posix/chown.hpp b/3rdparty/stout/include/stout/os/posix/chown.hpp -index c82e2e574..15d332107 100644 ---- a/3rdparty/stout/include/stout/os/posix/chown.hpp -+++ b/3rdparty/stout/include/stout/os/posix/chown.hpp -@@ -34,7 +34,7 @@ inline Try<Nothing> chown( - // TODO(bmahler): Consider walking the file tree instead. We would need - // to be careful to not miss dotfiles. - std::string command = -- "chown -R " + stringify(uid) + ':' + stringify(gid) + " '" + path + "'"; -+ "@chown@ -R " + stringify(uid) + ':' + stringify(gid) + " '" + path + "'"; - - int status = os::system(command); - if (status != 0) { -diff --git a/3rdparty/stout/include/stout/os/posix/fork.hpp b/3rdparty/stout/include/stout/os/posix/fork.hpp -index a29967dcb..290b98b50 100644 ---- a/3rdparty/stout/include/stout/os/posix/fork.hpp -+++ b/3rdparty/stout/include/stout/os/posix/fork.hpp +diff --git i/3rdparty/stout/include/stout/os/posix/fork.hpp w/3rdparty/stout/include/stout/os/posix/fork.hpp +index a29967d..290b98b 100644 +--- i/3rdparty/stout/include/stout/os/posix/fork.hpp ++++ w/3rdparty/stout/include/stout/os/posix/fork.hpp @@ -369,7 +369,7 @@ private: if (exec.isSome()) { // Execute the command (via '/bin/sh -c command'). @@ -24,11 +11,11 @@ index a29967dcb..290b98b50 100644 EXIT(EXIT_FAILURE) << "Failed to execute '" << command << "': " << os::strerror(errno); } else if (wait.isSome()) { -diff --git a/3rdparty/stout/include/stout/posix/os.hpp b/3rdparty/stout/include/stout/posix/os.hpp -index c37e64db6..d3d87b7f0 100644 ---- a/3rdparty/stout/include/stout/posix/os.hpp -+++ b/3rdparty/stout/include/stout/posix/os.hpp -@@ -375,7 +375,7 @@ inline Option<std::string> getenv(const std::string& key) +diff --git i/3rdparty/stout/include/stout/posix/os.hpp w/3rdparty/stout/include/stout/posix/os.hpp +index 8511dfd..1e7be01 100644 +--- i/3rdparty/stout/include/stout/posix/os.hpp ++++ w/3rdparty/stout/include/stout/posix/os.hpp +@@ -366,7 +366,7 @@ inline Try<std::set<pid_t>> pids(Option<pid_t> group, Option<pid_t> session) inline Try<Nothing> tar(const std::string& path, const std::string& archive) { Try<std::string> tarOut = @@ -37,11 +24,11 @@ index c37e64db6..d3d87b7f0 100644 if (tarOut.isError()) { return Error("Failed to archive " + path + ": " + tarOut.error()); -diff --git a/src/Makefile.am b/src/Makefile.am -index 3bcc0f2df..e5cbc57e8 100644 ---- a/src/Makefile.am -+++ b/src/Makefile.am -@@ -1545,7 +1545,7 @@ if HAS_JAVA +diff --git i/src/Makefile.am w/src/Makefile.am +index 68fff14..c572f92 100644 +--- i/src/Makefile.am ++++ w/src/Makefile.am +@@ -1775,7 +1775,7 @@ if HAS_JAVA $(MESOS_JAR): $(MESOS_JAR_SOURCE) $(MESOS_JAR_GENERATED) java/mesos.pom @echo "Building mesos-$(PACKAGE_VERSION).jar ..." @@ -50,10 +37,10 @@ index 3bcc0f2df..e5cbc57e8 100644 # Convenience library for JNI bindings. # TODO(Charles Reiss): We really should be building the Java library -diff --git a/src/cli/mesos-scp b/src/cli/mesos-scp -index a71ab0708..1043d1b3c 100755 ---- a/src/cli/mesos-scp -+++ b/src/cli/mesos-scp +diff --git i/src/cli/mesos-scp w/src/cli/mesos-scp +index a71ab07..1043d1b 100755 +--- i/src/cli/mesos-scp ++++ w/src/cli/mesos-scp @@ -19,7 +19,8 @@ if sys.version_info < (2,6,0): @@ -64,11 +51,11 @@ index a71ab0708..1043d1b3c 100755 try: process = subprocess.Popen( cmd, -diff --git a/src/common/command_utils.cpp b/src/common/command_utils.cpp -index 09e805140..90bf65896 100644 ---- a/src/common/command_utils.cpp -+++ b/src/common/command_utils.cpp -@@ -140,7 +140,7 @@ Future<Nothing> tar( +diff --git i/src/common/command_utils.cpp w/src/common/command_utils.cpp +index c50be76..388cc53 100644 +--- i/src/common/command_utils.cpp ++++ w/src/common/command_utils.cpp +@@ -142,7 +142,7 @@ Future<Nothing> tar( argv.emplace_back(input); @@ -77,7 +64,7 @@ index 09e805140..90bf65896 100644 .then([]() { return Nothing(); }); } -@@ -162,7 +162,7 @@ Future<Nothing> untar( +@@ -164,7 +164,7 @@ Future<Nothing> untar( argv.emplace_back(directory.get()); } @@ -86,7 +73,7 @@ index 09e805140..90bf65896 100644 .then([]() { return Nothing(); }); } -@@ -170,7 +170,7 @@ Future<Nothing> untar( +@@ -172,7 +172,7 @@ Future<Nothing> untar( Future<string> sha512(const Path& input) { #ifdef __linux__ @@ -95,7 +82,7 @@ index 09e805140..90bf65896 100644 vector<string> argv = { cmd, input // Input file to compute shasum. -@@ -206,7 +206,7 @@ Future<Nothing> gzip(const Path& input) +@@ -208,7 +208,7 @@ Future<Nothing> gzip(const Path& input) input }; @@ -104,7 +91,7 @@ index 09e805140..90bf65896 100644 .then([]() { return Nothing(); }); } -@@ -219,7 +219,7 @@ Future<Nothing> decompress(const Path& input) +@@ -221,7 +221,7 @@ Future<Nothing> decompress(const Path& input) input }; @@ -113,41 +100,45 @@ index 09e805140..90bf65896 100644 .then([]() { return Nothing(); }); } -diff --git a/src/launcher/fetcher.cpp b/src/launcher/fetcher.cpp -index 4456c2813..e22c8fc03 100644 ---- a/src/launcher/fetcher.cpp -+++ b/src/launcher/fetcher.cpp -@@ -68,13 +68,13 @@ static Try<bool> extract( +diff --git i/src/launcher/fetcher.cpp w/src/launcher/fetcher.cpp +index 42980f5..3aebeed 100644 +--- i/src/launcher/fetcher.cpp ++++ w/src/launcher/fetcher.cpp +@@ -80,17 +80,17 @@ static Try<bool> extract( strings::endsWith(sourcePath, ".tar.bz2") || strings::endsWith(sourcePath, ".txz") || strings::endsWith(sourcePath, ".tar.xz")) { -- command = "tar -C '" + destinationDirectory + "' -xf"; -+ command = "@tar@ -C '" + destinationDirectory + "' -xf"; +- command = {"tar", "-C", destinationDirectory, "-xf", sourcePath}; ++ command = {"@tar@", "-C", destinationDirectory, "-xf", sourcePath}; } else if (strings::endsWith(sourcePath, ".gz")) { string pathWithoutExtension = sourcePath.substr(0, sourcePath.length() - 3); string filename = Path(pathWithoutExtension).basename(); -- command = "gzip -dc > '" + destinationDirectory + "/" + filename + "' <"; -+ command = "@gzip@ -dc > '" + destinationDirectory + "/" + filename + "' <"; + string destinationPath = path::join(destinationDirectory, filename); + +- command = {"gunzip", "-d", "-c"}; ++ command = {"@gunzip@", "-d", "-c"}; + in = Subprocess::PATH(sourcePath); + out = Subprocess::PATH(destinationPath); } else if (strings::endsWith(sourcePath, ".zip")) { -- command = "unzip -o -d '" + destinationDirectory + "'"; -+ command = "@unzip@ -o -d '" + destinationDirectory + "'"; +- command = {"unzip", "-o", "-d", destinationDirectory, sourcePath}; ++ command = {"@unzip@", "-o", "-d", destinationDirectory, sourcePath}; } else { return false; } -@@ -162,7 +162,7 @@ static Try<string> copyFile( +@@ -193,7 +193,7 @@ static Try<string> copyFile( const string& sourcePath, const string& destinationPath) { -- const string command = "cp '" + sourcePath + "' '" + destinationPath + "'"; -+ const string command = "@cp@ '" + sourcePath + "' '" + destinationPath + "'"; - - LOG(INFO) << "Copying resource with command:" << command; - -diff --git a/src/linux/perf.cpp b/src/linux/perf.cpp -index aa31982eb..8b5331b17 100644 ---- a/src/linux/perf.cpp -+++ b/src/linux/perf.cpp -@@ -127,7 +127,7 @@ private: +- int status = os::spawn("cp", {"cp", sourcePath, destinationPath}); ++ int status = os::spawn("cp", {"@cp@", sourcePath, destinationPath}); + + if (status == -1) { + return ErrnoError("Failed to copy '" + sourcePath + "'"); +diff --git i/src/linux/perf.cpp w/src/linux/perf.cpp +index b301e25..356a2cf 100644 +--- i/src/linux/perf.cpp ++++ w/src/linux/perf.cpp +@@ -128,7 +128,7 @@ private: // NOTE: The supervisor childhook places perf in its own process group // and will kill the perf process when the parent dies. Try<Subprocess> _perf = subprocess( @@ -156,19 +147,10 @@ index aa31982eb..8b5331b17 100644 argv, Subprocess::PIPE(), Subprocess::PIPE(), -@@ -319,7 +319,7 @@ bool valid(const set<string>& events) - ostringstream command; - - // Log everything to stderr which is then redirected to /dev/null. -- command << "perf stat --log-fd 2"; -+ command << "@perf@ stat --log-fd 2"; - foreach (const string& event, events) { - command << " --event " << event; - } -diff --git a/src/linux/systemd.cpp b/src/linux/systemd.cpp -index 6318f48fc..394d88d47 100644 ---- a/src/linux/systemd.cpp -+++ b/src/linux/systemd.cpp +diff --git i/src/linux/systemd.cpp w/src/linux/systemd.cpp +index 6318f48..394d88d 100644 +--- i/src/linux/systemd.cpp ++++ w/src/linux/systemd.cpp @@ -196,13 +196,21 @@ bool exists() // This is static as the init system should not change while we are running. static const bool exists = []() -> bool { @@ -209,10 +191,10 @@ index 6318f48fc..394d88d47 100644 Try<string> daemonReload = os::shell("systemctl daemon-reload"); if (daemonReload.isError()) { return Error("Failed to reload systemd daemon: " + daemonReload.error()); -diff --git a/src/python/cli/src/mesos/cli.py b/src/python/cli/src/mesos/cli.py -index f342992e0..354abf443 100644 ---- a/src/python/cli/src/mesos/cli.py -+++ b/src/python/cli/src/mesos/cli.py +diff --git i/src/python/cli/src/mesos/cli.py w/src/python/cli/src/mesos/cli.py +index 4a9b558..c08a8b9 100644 +--- i/src/python/cli/src/mesos/cli.py ++++ w/src/python/cli/src/mesos/cli.py @@ -40,7 +40,7 @@ def resolve(master): import subprocess @@ -222,10 +204,10 @@ index f342992e0..354abf443 100644 stdin=None, stdout=subprocess.PIPE, stderr=subprocess.PIPE, -diff --git a/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp b/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp -index af9f3736b..f8554d414 100644 ---- a/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp -+++ b/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp +diff --git i/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp w/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp +index 5b630c1..d63ad69 100644 +--- i/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp ++++ w/src/slave/containerizer/mesos/isolators/docker/volume/isolator.cpp @@ -499,7 +499,7 @@ Future<Option<ContainerLaunchInfo>> DockerVolumeIsolatorProcess::_prepare( // unsafe arbitrary commands). CommandInfo* command = launchInfo.add_pre_exec_commands(); @@ -235,11 +217,11 @@ index af9f3736b..f8554d414 100644 command->add_arguments("mount"); command->add_arguments("-n"); command->add_arguments("--rbind"); -diff --git a/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp b/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp -index df16b8fee..4a17475bd 100644 ---- a/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp -+++ b/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp -@@ -159,9 +159,9 @@ Try<Isolator*> LinuxFilesystemIsolatorProcess::create(const Flags& flags) +diff --git i/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp w/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp +index d7fe9a8..1361a4e 100644 +--- i/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp ++++ w/src/slave/containerizer/mesos/isolators/filesystem/linux.cpp +@@ -154,9 +154,9 @@ Try<Isolator*> LinuxFilesystemIsolatorProcess::create(const Flags& flags) // here because 'create' will only be invoked during // initialization. Try<string> mount = os::shell( @@ -252,7 +234,7 @@ index df16b8fee..4a17475bd 100644 workDir->c_str(), workDir->c_str(), workDir->c_str(), -@@ -180,8 +180,8 @@ Try<Isolator*> LinuxFilesystemIsolatorProcess::create(const Flags& flags) +@@ -175,8 +175,8 @@ Try<Isolator*> LinuxFilesystemIsolatorProcess::create(const Flags& flags) LOG(INFO) << "Making '" << workDir.get() << "' a shared mount"; Try<string> mount = os::shell( @@ -263,7 +245,7 @@ index df16b8fee..4a17475bd 100644 workDir->c_str(), workDir->c_str()); -@@ -404,7 +404,7 @@ Try<vector<CommandInfo>> LinuxFilesystemIsolatorProcess::getPreExecCommands( +@@ -422,7 +422,7 @@ Try<vector<CommandInfo>> LinuxFilesystemIsolatorProcess::getPreExecCommands( CommandInfo command; command.set_shell(false); @@ -272,7 +254,7 @@ index df16b8fee..4a17475bd 100644 command.add_arguments("mount"); command.add_arguments("-n"); command.add_arguments("--rbind"); -@@ -569,7 +569,7 @@ Try<vector<CommandInfo>> LinuxFilesystemIsolatorProcess::getPreExecCommands( +@@ -610,7 +610,7 @@ Try<vector<CommandInfo>> LinuxFilesystemIsolatorProcess::getPreExecCommands( // TODO(jieyu): Consider the mode in the volume. CommandInfo command; command.set_shell(false); @@ -281,11 +263,11 @@ index df16b8fee..4a17475bd 100644 command.add_arguments("mount"); command.add_arguments("-n"); command.add_arguments("--rbind"); -diff --git a/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp b/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp -index a1283e5ee..a918427bf 100644 ---- a/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp -+++ b/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp -@@ -207,7 +207,7 @@ Future<Option<ContainerLaunchInfo>> SharedFilesystemIsolatorProcess::prepare( +diff --git i/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp w/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp +index 927d95b..576dc63 100644 +--- i/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp ++++ w/src/slave/containerizer/mesos/isolators/filesystem/shared.cpp +@@ -208,7 +208,7 @@ Future<Option<ContainerLaunchInfo>> SharedFilesystemIsolatorProcess::prepare( } launchInfo.add_pre_exec_commands()->set_value( @@ -294,11 +276,11 @@ index a1283e5ee..a918427bf 100644 } return launchInfo; -diff --git a/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp b/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp -index e3756c920..cfe458b59 100644 ---- a/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp -+++ b/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp -@@ -355,7 +355,7 @@ Future<Option<ContainerLaunchInfo>> NvidiaGpuIsolatorProcess::_prepare( +diff --git i/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp w/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp +index 25636b5..33ec315 100644 +--- i/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp ++++ w/src/slave/containerizer/mesos/isolators/gpu/isolator.cpp +@@ -401,7 +401,7 @@ Future<Option<ContainerLaunchInfo>> NvidiaGpuIsolatorProcess::_prepare( } launchInfo.add_pre_exec_commands()->set_value( @@ -307,11 +289,11 @@ index e3756c920..cfe458b59 100644 volume.HOST_PATH() + " " + target); } -diff --git a/src/slave/containerizer/mesos/isolators/gpu/volume.cpp b/src/slave/containerizer/mesos/isolators/gpu/volume.cpp -index 478752f37..ab527f0cd 100644 ---- a/src/slave/containerizer/mesos/isolators/gpu/volume.cpp -+++ b/src/slave/containerizer/mesos/isolators/gpu/volume.cpp -@@ -281,7 +281,7 @@ Try<NvidiaVolume> NvidiaVolume::create() +diff --git i/src/slave/containerizer/mesos/isolators/gpu/volume.cpp w/src/slave/containerizer/mesos/isolators/gpu/volume.cpp +index 536a3c7..e2819dd 100644 +--- i/src/slave/containerizer/mesos/isolators/gpu/volume.cpp ++++ w/src/slave/containerizer/mesos/isolators/gpu/volume.cpp +@@ -274,7 +274,7 @@ Try<NvidiaVolume> NvidiaVolume::create() string path = path::join(hostPath, "bin", binary); if (!os::exists(path)) { @@ -320,7 +302,7 @@ index 478752f37..ab527f0cd 100644 Try<string> which = os::shell(command); if (which.isSome()) { -@@ -295,7 +295,7 @@ Try<NvidiaVolume> NvidiaVolume::create() +@@ -288,7 +288,7 @@ Try<NvidiaVolume> NvidiaVolume::create() : "No such file or directory")); } @@ -329,7 +311,7 @@ index 478752f37..ab527f0cd 100644 Try<string> cp = os::shell(command); if (cp.isError()) { return Error("Failed to os::shell '" + command + "': " + cp.error()); -@@ -367,7 +367,7 @@ Try<NvidiaVolume> NvidiaVolume::create() +@@ -360,7 +360,7 @@ Try<NvidiaVolume> NvidiaVolume::create() Path(realpath.get()).basename()); if (!os::exists(libraryPath)) { @@ -338,11 +320,11 @@ index 478752f37..ab527f0cd 100644 Try<string> cp = os::shell(command); if (cp.isError()) { return Error("Failed to os::shell '" + command + "':" -diff --git a/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp b/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp -index 0d9ec57d9..a177e4476 100644 ---- a/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp -+++ b/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp -@@ -94,7 +94,7 @@ Future<Option<ContainerLaunchInfo>> NamespacesPidIsolatorProcess::prepare( +diff --git i/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp w/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp +index 42bc2e1..2f9066e 100644 +--- i/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp ++++ w/src/slave/containerizer/mesos/isolators/namespaces/pid.cpp +@@ -131,7 +131,7 @@ Future<Option<ContainerLaunchInfo>> NamespacesPidIsolatorProcess::prepare( // // TOOD(jieyu): Consider unmount the existing /proc. launchInfo.add_pre_exec_commands()->set_value( @@ -351,11 +333,11 @@ index 0d9ec57d9..a177e4476 100644 return launchInfo; } -diff --git a/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp b/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp -index c87e6715a..6601cd1b3 100644 ---- a/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp -+++ b/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp -@@ -262,9 +262,9 @@ Try<Isolator*> NetworkCniIsolatorProcess::create(const Flags& flags) +diff --git i/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp w/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp +index fc68f04..267b040 100644 +--- i/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp ++++ w/src/slave/containerizer/mesos/isolators/network/cni/cni.cpp +@@ -205,9 +205,9 @@ Try<Isolator*> NetworkCniIsolatorProcess::create(const Flags& flags) // here because 'create' will only be invoked during // initialization. Try<string> mount = os::shell( @@ -368,7 +350,7 @@ index c87e6715a..6601cd1b3 100644 rootDir->c_str(), rootDir->c_str(), rootDir->c_str(), -@@ -284,8 +284,8 @@ Try<Isolator*> NetworkCniIsolatorProcess::create(const Flags& flags) +@@ -227,8 +227,8 @@ Try<Isolator*> NetworkCniIsolatorProcess::create(const Flags& flags) LOG(INFO) << "Making '" << rootDir.get() << "' a shared mount"; Try<string> mount = os::shell( @@ -379,11 +361,11 @@ index c87e6715a..6601cd1b3 100644 rootDir->c_str(), rootDir->c_str()); -diff --git a/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp b/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp -index b470f0c82..6110a43ee 100644 ---- a/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp -+++ b/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp -@@ -303,7 +303,7 @@ Try<Nothing> PortMapper::addPortMapping( +diff --git i/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp w/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp +index 43cf3e4..94bad8b 100644 +--- i/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp ++++ w/src/slave/containerizer/mesos/isolators/network/cni/plugins/port_mapper/port_mapper.cpp +@@ -301,7 +301,7 @@ Try<Nothing> PortMapper::addPortMapping( # Check if the `chain` exists in the iptable. If it does not # exist go ahead and install the chain in the iptables NAT # table. @@ -392,7 +374,7 @@ index b470f0c82..6110a43ee 100644 if [ $? -ne 0 ]; then # NOTE: When we create the chain, there is a possibility of a # race due to which a container launch can fail. This can -@@ -317,25 +317,25 @@ Try<Nothing> PortMapper::addPortMapping( +@@ -315,25 +315,25 @@ Try<Nothing> PortMapper::addPortMapping( # since it can happen only when the chain is created the first # time and two commands for creation of the chain are executed # simultaneously. @@ -422,7 +404,7 @@ index b470f0c82..6110a43ee 100644 chain, chain, chain, -@@ -362,7 +362,7 @@ Try<Nothing> PortMapper::delPortMapping() +@@ -360,7 +360,7 @@ Try<Nothing> PortMapper::delPortMapping() # The iptables command searches for the DNAT rules with tag # "container_id: <CNI_CONTAINERID>", and if it exists goes ahead # and deletes it. @@ -431,11 +413,11 @@ index b470f0c82..6110a43ee 100644 chain, getIptablesRuleTag()).get(); -diff --git a/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp b/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp -index 20fb6ab35..46c160977 100644 ---- a/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp -+++ b/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp -@@ -1393,19 +1393,19 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) +diff --git i/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp w/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp +index 57d4ccd..68c9577 100644 +--- i/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp ++++ w/src/slave/containerizer/mesos/isolators/network/port_mapping.cpp +@@ -1394,19 +1394,19 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) // Check the availability of a few Linux commands that we will use. // We use the blocking os::shell here because 'create' will only be // invoked during initialization. @@ -458,7 +440,7 @@ index 20fb6ab35..46c160977 100644 if (checkCommandIp.isError()) { return Error("Check command 'ip' failed: " + checkCommandIp.error()); } -@@ -1925,9 +1925,9 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) +@@ -1940,9 +1940,9 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) // visible. It's OK to use the blocking os::shell here because // 'create' will only be invoked during initialization. Try<string> mount = os::shell( @@ -471,7 +453,7 @@ index 20fb6ab35..46c160977 100644 bindMountRoot->c_str(), bindMountRoot->c_str(), bindMountRoot->c_str(), -@@ -1944,8 +1944,8 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) +@@ -1959,8 +1959,8 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) // shared mount yet (possibly due to slave crash while preparing // the work directory mount). It's safe to re-do the following. Try<string> mount = os::shell( @@ -482,7 +464,7 @@ index 20fb6ab35..46c160977 100644 bindMountRoot->c_str(), bindMountRoot->c_str()); -@@ -1964,8 +1964,8 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) +@@ -1979,8 +1979,8 @@ Try<Isolator*> PortMappingIsolatorProcess::create(const Flags& flags) // so that they are in different peer groups. if (entry.shared() == bindMountEntry->shared()) { Try<string> mount = os::shell( @@ -493,7 +475,7 @@ index 20fb6ab35..46c160977 100644 bindMountRoot->c_str(), bindMountRoot->c_str()); -@@ -3911,6 +3911,8 @@ Try<Nothing> PortMappingIsolatorProcess::removeHostIPFilters( +@@ -3927,6 +3927,8 @@ Try<Nothing> PortMappingIsolatorProcess::removeHostIPFilters( // TODO(jieyu): Use the Subcommand abstraction to remove most of the // logic here. Completely remove this function once we can assume a // newer kernel where 'setns' works for mount namespaces. @@ -502,7 +484,7 @@ index 20fb6ab35..46c160977 100644 string PortMappingIsolatorProcess::scripts(Info* info) { ostringstream script; -@@ -3921,7 +3923,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -3937,7 +3939,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) // Mark the mount point PORT_MAPPING_BIND_MOUNT_ROOT() as slave // mount so that changes in the container will not be propagated to // the host. @@ -511,7 +493,7 @@ index 20fb6ab35..46c160977 100644 // Disable IPv6 when IPv6 module is loaded as IPv6 packets won't be // forwarded anyway. -@@ -3929,7 +3931,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -3945,7 +3947,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) << " echo 1 > /proc/sys/net/ipv6/conf/all/disable_ipv6\n"; // Configure lo and eth0. @@ -520,7 +502,7 @@ index 20fb6ab35..46c160977 100644 << " mtu " << hostEth0MTU << " up\n"; // NOTE: This is mostly a kernel issue: in veth_xmit() the kernel -@@ -3938,12 +3940,12 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -3954,12 +3956,12 @@ string PortMappingIsolatorProcess::scripts(Info* info) // when we receive a packet with a bad checksum. Disabling rx // checksum offloading ensures the TCP layer will checksum and drop // it. @@ -537,7 +519,7 @@ index 20fb6ab35..46c160977 100644 // Restrict the ephemeral ports that can be used by the container. script << "echo " << info->ephemeralPorts.lower() << " " -@@ -3972,19 +3974,19 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -3988,19 +3990,19 @@ string PortMappingIsolatorProcess::scripts(Info* info) } // Set up filters on lo and eth0. @@ -561,7 +543,7 @@ index 20fb6ab35..46c160977 100644 << " protocol ip" << " prio " << Priority(IP_FILTER_PRIORITY, NORMAL).get() << " u32" << " flowid ffff:0" -@@ -3995,7 +3997,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -4011,7 +4013,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) foreach (const PortRange& range, getPortRanges(info->nonEphemeralPorts + info->ephemeralPorts)) { // Local traffic inside a container will not be redirected to eth0. @@ -570,7 +552,7 @@ index 20fb6ab35..46c160977 100644 << " protocol ip" << " prio " << Priority(IP_FILTER_PRIORITY, HIGH).get() << " u32" << " flowid ffff:0" -@@ -4004,7 +4006,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -4020,7 +4022,7 @@ string PortMappingIsolatorProcess::scripts(Info* info) // Traffic going to host loopback IP and ports assigned to this // container will be redirected to lo. @@ -579,7 +561,7 @@ index 20fb6ab35..46c160977 100644 << " protocol ip" << " prio " << Priority(IP_FILTER_PRIORITY, NORMAL).get() << " u32" << " flowid ffff:0" -@@ -4016,14 +4018,14 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -4032,14 +4034,14 @@ string PortMappingIsolatorProcess::scripts(Info* info) } // Do not forward the ICMP packet if the destination IP is self. @@ -596,8 +578,8 @@ index 20fb6ab35..46c160977 100644 << " protocol ip" << " prio " << Priority(ICMP_FILTER_PRIORITY, NORMAL).get() << " u32" << " flowid ffff:0" -@@ -4032,9 +4034,9 @@ string PortMappingIsolatorProcess::scripts(Info* info) - << net::IPNetwork::LOOPBACK_V4().address() << "\n"; +@@ -4048,9 +4050,9 @@ string PortMappingIsolatorProcess::scripts(Info* info) + << net::IP::Network::LOOPBACK_V4().address() << "\n"; // Display the filters created on eth0 and lo. - script << "tc filter show dev " << eth0 @@ -608,7 +590,7 @@ index 20fb6ab35..46c160977 100644 << " parent " << ingress::HANDLE << "\n"; // If throughput limit for container egress traffic exists, use HTB -@@ -4046,9 +4048,9 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -4062,9 +4064,9 @@ string PortMappingIsolatorProcess::scripts(Info* info) // throughput. TBF requires other parameters such as 'burst' that // HTB already has default values for. if (egressRateLimitPerContainer.isSome()) { @@ -620,7 +602,7 @@ index 20fb6ab35..46c160977 100644 << CONTAINER_TX_HTB_HANDLE << " classid " << CONTAINER_TX_HTB_CLASS_ID << " htb rate " << egressRateLimitPerContainer.get().bytes() * 8 << "bit\n"; -@@ -4059,12 +4061,12 @@ string PortMappingIsolatorProcess::scripts(Info* info) +@@ -4075,12 +4077,12 @@ string PortMappingIsolatorProcess::scripts(Info* info) // fq_codel, which has a larger buffer and better control on // buffer bloat. // TODO(cwang): Verity that fq_codel qdisc is available. @@ -636,24 +618,24 @@ index 20fb6ab35..46c160977 100644 } return script.str(); -diff --git a/src/slave/containerizer/mesos/isolators/posix/disk.cpp b/src/slave/containerizer/mesos/isolators/posix/disk.cpp -index db0583386..542586370 100644 ---- a/src/slave/containerizer/mesos/isolators/posix/disk.cpp -+++ b/src/slave/containerizer/mesos/isolators/posix/disk.cpp -@@ -540,7 +540,7 @@ private: +diff --git i/src/slave/containerizer/mesos/isolators/posix/disk.cpp w/src/slave/containerizer/mesos/isolators/posix/disk.cpp +index eb23025..db268ea 100644 +--- i/src/slave/containerizer/mesos/isolators/posix/disk.cpp ++++ w/src/slave/containerizer/mesos/isolators/posix/disk.cpp +@@ -572,7 +572,7 @@ private: // NOTE: The supervisor childhook will watch the parent process and kill // the 'du' process in case that the parent die. Try<Subprocess> s = subprocess( - "du", + "@du@", command, - Subprocess::PATH("/dev/null"), + Subprocess::PATH(os::DEV_NULL), Subprocess::PIPE(), -diff --git a/src/slave/containerizer/mesos/isolators/volume/image.cpp b/src/slave/containerizer/mesos/isolators/volume/image.cpp -index 210e67ad0..60b3a15e4 100644 ---- a/src/slave/containerizer/mesos/isolators/volume/image.cpp -+++ b/src/slave/containerizer/mesos/isolators/volume/image.cpp -@@ -214,7 +214,7 @@ Future<Option<ContainerLaunchInfo>> VolumeImageIsolatorProcess::_prepare( +diff --git i/src/slave/containerizer/mesos/isolators/volume/image.cpp w/src/slave/containerizer/mesos/isolators/volume/image.cpp +index 35966aa..b62fc86 100644 +--- i/src/slave/containerizer/mesos/isolators/volume/image.cpp ++++ w/src/slave/containerizer/mesos/isolators/volume/image.cpp +@@ -231,7 +231,7 @@ Future<Option<ContainerLaunchInfo>> VolumeImageIsolatorProcess::_prepare( CommandInfo* command = launchInfo.add_pre_exec_commands(); command->set_shell(false); @@ -662,11 +644,11 @@ index 210e67ad0..60b3a15e4 100644 command->add_arguments("mount"); command->add_arguments("-n"); command->add_arguments("--rbind"); -diff --git a/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp b/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp -index 7b976d292..474dcd486 100644 ---- a/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp -+++ b/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp -@@ -240,7 +240,7 @@ Future<Option<ContainerLaunchInfo>> VolumeSandboxPathIsolatorProcess::prepare( +diff --git i/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp w/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp +index b321b86..8ed3e78 100644 +--- i/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp ++++ w/src/slave/containerizer/mesos/isolators/volume/sandbox_path.cpp +@@ -265,7 +265,7 @@ Future<Option<ContainerLaunchInfo>> VolumeSandboxPathIsolatorProcess::prepare( CommandInfo* command = launchInfo.add_pre_exec_commands(); command->set_shell(false); @@ -675,58 +657,60 @@ index 7b976d292..474dcd486 100644 command->add_arguments("mount"); command->add_arguments("-n"); command->add_arguments("--rbind"); -diff --git a/src/slave/containerizer/mesos/provisioner/backends/copy.cpp b/src/slave/containerizer/mesos/provisioner/backends/copy.cpp -index 9c5354e5f..a73a9692e 100644 ---- a/src/slave/containerizer/mesos/provisioner/backends/copy.cpp -+++ b/src/slave/containerizer/mesos/provisioner/backends/copy.cpp -@@ -147,7 +147,7 @@ Future<Nothing> CopyBackendProcess::_provision( +diff --git i/src/slave/containerizer/mesos/provisioner/backends/copy.cpp w/src/slave/containerizer/mesos/provisioner/backends/copy.cpp +index 69faa03..01a3ed6 100644 +--- i/src/slave/containerizer/mesos/provisioner/backends/copy.cpp ++++ w/src/slave/containerizer/mesos/provisioner/backends/copy.cpp +@@ -266,7 +266,7 @@ Future<Nothing> CopyBackendProcess::_provision( #endif // __APPLE__ || __FreeBSD__ Try<Subprocess> s = subprocess( - "cp", + "@cp@", args, - Subprocess::PATH("/dev/null"), - Subprocess::PATH("/dev/null"), -@@ -180,7 +180,7 @@ Future<bool> CopyBackendProcess::destroy(const string& rootfs) + Subprocess::PATH(os::DEV_NULL), + Subprocess::PATH(os::DEV_NULL), +@@ -313,7 +313,7 @@ Future<bool> CopyBackendProcess::destroy(const string& rootfs) vector<string> argv{"rm", "-rf", rootfs}; Try<Subprocess> s = subprocess( - "rm", + "@rm@", argv, - Subprocess::PATH("/dev/null"), + Subprocess::PATH(os::DEV_NULL), Subprocess::FD(STDOUT_FILENO), -diff --git a/src/uri/fetchers/copy.cpp b/src/uri/fetchers/copy.cpp -index 2cfef5ab0..8a62f7699 100644 ---- a/src/uri/fetchers/copy.cpp -+++ b/src/uri/fetchers/copy.cpp -@@ -97,7 +97,7 @@ Future<Nothing> CopyFetcherPlugin::fetch( - const vector<string> argv = {"cp", "-a", uri.path(), directory}; - - Try<Subprocess> s = subprocess( -- "cp", -+ "@cp@", - argv, - Subprocess::PATH("/dev/null"), - Subprocess::PIPE(), -diff --git a/src/uri/fetchers/curl.cpp b/src/uri/fetchers/curl.cpp -index 7b746d619..12bbb04df 100644 ---- a/src/uri/fetchers/curl.cpp -+++ b/src/uri/fetchers/curl.cpp -@@ -107,7 +107,7 @@ Future<Nothing> CurlFetcherPlugin::fetch( +diff --git i/src/uri/fetchers/copy.cpp w/src/uri/fetchers/copy.cpp +index 17f69be..831b08a 100644 +--- i/src/uri/fetchers/copy.cpp ++++ w/src/uri/fetchers/copy.cpp +@@ -97,8 +97,8 @@ Future<Nothing> CopyFetcherPlugin::fetch( + VLOG(1) << "Copying '" << uri.path() << "' to '" << directory << "'"; + + #ifndef __WINDOWS__ +- const char* copyCommand = "cp"; +- const vector<string> argv = {"cp", "-a", uri.path(), directory}; ++ const char* copyCommand = "@cp@"; ++ const vector<string> argv = {"@cp@", "-a", uri.path(), directory}; + #else // __WINDOWS__ + const char* copyCommand = os::Shell::name; + const vector<string> argv = +diff --git i/src/uri/fetchers/curl.cpp w/src/uri/fetchers/curl.cpp +index f34daf2..6a50341 100644 +--- i/src/uri/fetchers/curl.cpp ++++ w/src/uri/fetchers/curl.cpp +@@ -109,7 +109,7 @@ Future<Nothing> CurlFetcherPlugin::fetch( }; Try<Subprocess> s = subprocess( - "curl", + "@curl@", argv, - Subprocess::PATH("/dev/null"), + Subprocess::PATH(os::DEV_NULL), Subprocess::PIPE(), -diff --git a/src/uri/fetchers/docker.cpp b/src/uri/fetchers/docker.cpp -index 3f38dddfb..fd991ee74 100644 ---- a/src/uri/fetchers/docker.cpp -+++ b/src/uri/fetchers/docker.cpp +diff --git i/src/uri/fetchers/docker.cpp w/src/uri/fetchers/docker.cpp +index 91db13b..82a7fc4 100644 +--- i/src/uri/fetchers/docker.cpp ++++ w/src/uri/fetchers/docker.cpp @@ -114,7 +114,7 @@ static Future<http::Response> curl( // TODO(jieyu): Kill the process if discard is called. @@ -734,14 +718,14 @@ index 3f38dddfb..fd991ee74 100644 - "curl", + "@curl@", argv, - Subprocess::PATH("/dev/null"), + Subprocess::PATH(os::DEV_NULL), Subprocess::PIPE(), -@@ -213,7 +213,7 @@ static Future<int> download( +@@ -229,7 +229,7 @@ static Future<int> download( // TODO(jieyu): Kill the process if discard is called. Try<Subprocess> s = subprocess( - "curl", + "@curl@", argv, - Subprocess::PATH("/dev/null"), + Subprocess::PATH(os::DEV_NULL), Subprocess::PIPE(), diff --git a/pkgs/applications/networking/cluster/terraform/default.nix b/pkgs/applications/networking/cluster/terraform/default.nix index cc7a93bdb537..e6e3585a4d13 100644 --- a/pkgs/applications/networking/cluster/terraform/default.nix +++ b/pkgs/applications/networking/cluster/terraform/default.nix @@ -91,8 +91,8 @@ in { }; terraform_0_10 = pluggable (generic { - version = "0.10.2"; - sha256 = "1q7za7jcfqv914a3ynfl7hrqbgwcahgm418kivjrac6p1q26w502"; + version = "0.10.7"; + sha256 = "0gjvrra255m973nzi7rpqp5dn5npnd79cnv8vjcs7wmkdj1hli0l"; patches = [ ./provider-path.patch ]; passthru = { inherit plugins; }; }); diff --git a/pkgs/applications/networking/cluster/terraform/providers/data.nix b/pkgs/applications/networking/cluster/terraform/providers/data.nix index 0778e221c125..d29bd9648609 100644 --- a/pkgs/applications/networking/cluster/terraform/providers/data.nix +++ b/pkgs/applications/networking/cluster/terraform/providers/data.nix @@ -11,8 +11,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-archive"; - version = "0.1.0"; - sha256 = "1g7bjak1vgxpnmp4b9cb3mq8gqp1a7738fj0sxzflfk8k35p27ri"; + version = "1.0.0"; + sha256 = "0z85fpd70m2w59vxp82d8ipylaazf6l890rkjca4dm14rkq352zn"; }; arukas = { @@ -32,8 +32,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-aws"; - version = "0.1.4"; - sha256 = "0hqyvp1bgyfqq2lkjq5m5qxybagnxl9zrqiqfnlrfigdp0y31iz8"; + version = "1.0.0"; + sha256 = "1x3ldlx2iryxwfaws8ng9n0k06p7n8xqc6sjyxw73jdasxbh8wgi"; }; azure = { @@ -46,8 +46,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-azurerm"; - version = "0.1.6"; - sha256 = "01hjr42gpkpwpz0chnkw8pf0yid0hqpdnfz65q5h2p8h627hg0c6"; + version = "0.2.2"; + sha256 = "1jdkj1zylrlcd2qkfkl81i0ybdpmvbvvsk0f4ahafiqp550srf2d"; }; bitbucket = { @@ -102,15 +102,15 @@ { owner = "terraform-providers"; repo = "terraform-provider-consul"; - version = "0.1.0"; - sha256 = "1d179m42iv2dy6wjzldllffwg6qxbg6gnvxrp6nzy75v7qp2aq94"; + version = "1.0.0"; + sha256 = "1008lrvdqn3kk8gwvq094nwknh00b429jmwi0hq4brick7vyvbvz"; }; datadog = { owner = "terraform-providers"; repo = "terraform-provider-datadog"; - version = "0.1.0"; - sha256 = "1k3p0zxffhabs1xb6aw9189vbmh3ax10q4xi1qgjfjvla22byqmk"; + version = "0.1.1"; + sha256 = "0nyqybi3fl9qlhpx2n0vjz7kn3bqhf4wy93zhq3j3853zxpcjpzc"; }; digitalocean = { @@ -130,8 +130,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-dns"; - version = "0.1.1"; - sha256 = "0ccp02rbvfvrb808mg053q5y7ghvxsl7p1gzw7pkm934i6j90g9n"; + version = "1.0.0"; + sha256 = "05ismwpmpkv9qxn6g5i29y18s1pw4yf2pyvv9ak8hj8idh4z6gz2"; }; dnsimple = { @@ -151,15 +151,15 @@ { owner = "terraform-providers"; repo = "terraform-provider-dyn"; - version = "0.1.0"; - sha256 = "1w727r2gz5hjmbzw9zir0n5nrr818adh4qj50n3vijqwbxciyq2p"; + version = "1.0.0"; + sha256 = "0ph3516syca8f1zxmz66mh6y5kd8sc74kl0n8zixcgd6rvq0dysr"; }; external = { owner = "terraform-providers"; repo = "terraform-provider-external"; - version = "0.1.0"; - sha256 = "160f0avv6wbh11z54wy0qcq0zrcj4s31kn7a9x6zikv7v4hfnbza"; + version = "1.0.0"; + sha256 = "1sh0m8d6wp76h1b89j820yl3caji0f0wlgq3pwa5nk99h73rlndn"; }; fastly = { @@ -186,8 +186,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-google"; - version = "0.1.3"; - sha256 = "1aa1hz0yc4g746m6dl04hc70rcrzx0py8kpdch3kim475bspclnf"; + version = "1.0.1"; + sha256 = "0l0bpcfjnzlgf3g60iyfr3axw0244w99cf04z7y3bcszk5njipri"; }; grafana = { @@ -207,8 +207,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-http"; - version = "0.1.0"; - sha256 = "1iy5fsl1j4wswbajnw0k6lagc2sz52idnswj1vmfc66x87ls0mah"; + version = "1.0.0"; + sha256 = "1lks997sxfydm6a9s6vfyljs3j1r7qpg1k1s5ilpg5ckv77nad6g"; }; icinga2 = { @@ -221,8 +221,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-ignition"; - version = "0.2.0"; - sha256 = "07qsyjzbz34nh7qrmw97sg0zrqbchky9r3ywrdz96pmpr1yjmwr7"; + version = "1.0.0"; + sha256 = "0hr2zshrx4qfb7xdknsxsa4522kkf84rsqqbliz7ac9nsqpaarf4"; }; influxdb = { @@ -249,8 +249,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-local"; - version = "0.1.0"; - sha256 = "02m0wg0jasnzrayamjsc2hzi0ibj83v4d0hmw2xbrxk7vmk71lgq"; + version = "1.0.0"; + sha256 = "1dxdpmai8f0g1gj6khgv769lhg6ssfmgqskg4c5qf1jnv8yn8mkd"; }; logentries = { @@ -284,8 +284,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-nomad"; - version = "0.1.0"; - sha256 = "03sb31l59hxpp6zmnizxdm21jipz4mrzz9czk6ahhx7c8q0n0na8"; + version = "1.0.0"; + sha256 = "01fvw7yw8dhjclipnn9h1blagbp2849ahmnqj3ysh13i0x1qbq4r"; }; ns1 = { @@ -298,8 +298,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-null"; - version = "0.1.0"; - sha256 = "069yhsqi4jc14cay1gk7mwwmrg8xv90kj1k5qy3a2ypfbss4fcjp"; + version = "1.0.0"; + sha256 = "12vpa09xrq8z1pjq0bwzq3889c4fl6c5kvynwqy0z1pdx21m60ha"; }; oneandone = { @@ -312,15 +312,15 @@ { owner = "terraform-providers"; repo = "terraform-provider-opc"; - version = "0.1.2"; - sha256 = "0c4ywav89lln9417zwflrp3qhcs7qf96rgcvm1msmpgglrhzwp2i"; + version = "0.1.3"; + sha256 = "00h531pikjrmra2sr24lnx2z0dvycshd0qpz3wa733mkvvm47p07"; }; openstack = { owner = "terraform-providers"; repo = "terraform-provider-openstack"; - version = "0.2.1"; - sha256 = "1zsswsgv7lzhfd0v8llbm18gsfg6xji0r3f9rnvpjqkffj4088ca"; + version = "0.2.2"; + sha256 = "1027pqv1cvyvakn4kgivd720g9na38nam5bb5fjyd4d04xpq9v90"; }; opsgenie = { @@ -340,8 +340,8 @@ { owner = "terraform-providers"; repo = "terraform-provider-packet"; - version = "0.1.0"; - sha256 = "0dk10d4b10pdlhqgm6fqg0cn0ff78ss1x76inj6gfwrnbn2amhp0"; + version = "1.0.0"; + sha256 = "0ibz9k1yfqkfsmqmv1pl2jwzbld0l6f7zd8y80iw0v5wswclswya"; }; pagerduty = { @@ -375,22 +375,22 @@ { owner = "terraform-providers"; repo = "terraform-provider-rabbitmq"; - version = "0.1.0"; - sha256 = "0vn8456f2al1f6rs1gn157c86qz1fxz8sqphbr9lvdhy1jw1q2vp"; + version = "0.2.0"; + sha256 = "1pbib43d1iqy8xl03zqwnz77362cb9cq8awcpid714n1sz7nd4im"; }; rancher = { owner = "terraform-providers"; repo = "terraform-provider-rancher"; - version = "0.2.0"; - sha256 = "05aci6cjrs7rv6hqhvcqy1i0nr8azds8flnrc7vba0nyy6v192qg"; + version = "1.0.0"; + sha256 = "1fs8p0l8f79b1s2g0p5zlq1has9i7w3bmv76vrm79076v7w2v0d6"; }; random = { owner = "terraform-providers"; repo = "terraform-provider-random"; - version = "0.1.0"; - sha256 = "1lbv5yiw4qfsqm3gxf37gwadgp7g6ki0n70mj00d8l6v6jd0mdl5"; + version = "1.0.0"; + sha256 = "0im4dsnbpbc9qln92lxcrygm9d705bvlhigpx492172cq1fqnw61"; }; rundeck = { @@ -431,29 +431,29 @@ { owner = "terraform-providers"; repo = "terraform-provider-template"; - version = "0.1.1"; - sha256 = "1qrslnkvcj18jzxmsbf72gm54s8dnw5k5z15nffwgy09vv7mzpcn"; + version = "1.0.0"; + sha256 = "0jl6bp6gwg96sdk5j6s13vv1j9gxjpy2yva3barmzv9138i665mz"; }; terraform = { owner = "terraform-providers"; repo = "terraform-provider-terraform"; - version = "0.1.0"; - sha256 = "1w465853gwffpydb7idvg7bk8ygadgy08s04fxsqc8i2683jbpiz"; + version = "1.0.0"; + sha256 = "0icyyi4h48yh5235p5svm4p0jzbqqm1f3846dqy37czhjfcrn3gh"; }; tls = { owner = "terraform-providers"; repo = "terraform-provider-tls"; - version = "0.1.0"; - sha256 = "1n1k4dcqm8lp7mgj88xj8xc09mn769np4wg3cggnpcs6igbgdgg7"; + version = "1.0.0"; + sha256 = "063ai5zipmkwq0nr5c25gqsr970r8aba12ynxg9x8cnay0zn9s95"; }; triton = { owner = "terraform-providers"; repo = "terraform-provider-triton"; - version = "0.1.2"; - sha256 = "1jyrmc7932w7d8q96lmd0axf32psfic5d7hmwm1a25vzjzfn9nlw"; + version = "0.2.1"; + sha256 = "0ds2anr65xx9kdjv6x68lcxgl3js6l0m2cbx3kwx5465m01m3gxz"; }; ultradns = { @@ -480,7 +480,7 @@ { owner = "terraform-providers"; repo = "terraform-provider-vsphere"; - version = "0.2.2"; - sha256 = "0d5d4wip57zmv9kqh4zr9mz8ylffa2qcf1vmx827rwyqdr25xvaz"; + version = "0.4.1"; + sha256 = "0afxvjx9zb9ym0cs8j15s6nfp20rmmifjdc098wcfjmgnw6p7f01"; }; } diff --git a/pkgs/applications/networking/dropbox/default.nix b/pkgs/applications/networking/dropbox/default.nix index b9dae2d42006..0972cc759aba 100644 --- a/pkgs/applications/networking/dropbox/default.nix +++ b/pkgs/applications/networking/dropbox/default.nix @@ -24,10 +24,10 @@ let # NOTE: When updating, please also update in current stable, # as older versions stop working - version = "35.4.20"; + version = "36.4.22"; sha256 = { - "x86_64-linux" = "09qxr94bcyjn5ky20yapljxi2n2nbk6ldcpx2h0ysy8jp6zbrn78"; - "i686-linux" = "1rd4b26dbjf779g085si65lac74bk6lcx8k7i3nqk3vrvbva9n40"; + "x86_64-linux" = "0hhnigwxqmr00zmlysc1y1k4bzrdrcabcnw44bniarwa2l4fw0v0"; + "i686-linux" = "15l7m33b0qlz8m6h7kh1fkxs37dq8jqy04b3qf693ns7wb5l0sqm"; }."${stdenv.system}" or (throw "system ${stdenv.system} not supported"); arch = { diff --git a/pkgs/applications/networking/gns3/default.nix b/pkgs/applications/networking/gns3/default.nix index bec700367da8..5aa1649ff5f8 100644 --- a/pkgs/applications/networking/gns3/default.nix +++ b/pkgs/applications/networking/gns3/default.nix @@ -2,7 +2,7 @@ let stableVersion = "2.0.3"; - previewVersion = "2.1.0rc1"; + previewVersion = "2.1.0rc2"; addVersion = args: let version = if args.stable then stableVersion else previewVersion; branch = if args.stable then "stable" else "preview"; @@ -16,7 +16,7 @@ in { }; guiPreview = mkGui { stable = false; - sha256Hash = "0rmvanzc0fjw9giqwnf98yc49cxaz637w8b865dv08lcf1fg9j8l"; + sha256Hash = "1frfhys5s5lnqzk216y3wj2pli5g3b5imfzcmddxdcibksx13i17"; }; serverStable = mkServer { @@ -25,6 +25,6 @@ in { }; serverPreview = mkServer { stable = false; - sha256Hash = "181689fpjxq4hy2lyxk4zciqhgnhj5srvb4xsxdlbf68n89fj2zf"; + sha256Hash = "0vm4hir8yqj7xhykgg3x5rv1nj1qq6sg19sjj7r5w60brrlsw7v9"; }; } diff --git a/pkgs/applications/networking/instant-messengers/dino/default.nix b/pkgs/applications/networking/instant-messengers/dino/default.nix index eff9b71daa63..80e6af9c1ef5 100644 --- a/pkgs/applications/networking/instant-messengers/dino/default.nix +++ b/pkgs/applications/networking/instant-messengers/dino/default.nix @@ -2,7 +2,7 @@ , vala, cmake, wrapGAppsHook, pkgconfig, gettext , gobjectIntrospection, gnome3, glib, gdk_pixbuf, gtk3, glib_networking , xorg, libXdmcp, libxkbcommon -, libnotify +, libnotify, libsoup , libgcrypt , epoxy , at_spi2_core @@ -13,13 +13,13 @@ }: stdenv.mkDerivation rec { - name = "dino-unstable-2017-06-21"; + name = "dino-unstable-2017-09-26"; src = fetchFromGitHub { owner = "dino"; repo = "dino"; - rev = "3f0089db86e2057293a33453361678989919147f"; - sha256 = "011wd6qi8nagig8418hibgnsmznd76dvp3p2dzzr4wyrb7d6cgcb"; + rev = "9d8e1e88ec61403659a8cc410d5c4414e3bd3a96"; + sha256 = "1p8sda99n8zsb49qd6wzwb8hddlgrzr2hp7il5v7yqxjjm2vgqfl"; fetchSubmodules = true; }; @@ -42,6 +42,7 @@ stdenv.mkDerivation rec { libnotify gpgme libgcrypt + libsoup pcre xorg.libxcb xorg.libpthreadstubs diff --git a/pkgs/applications/networking/instant-messengers/scudcloud/default.nix b/pkgs/applications/networking/instant-messengers/scudcloud/default.nix index a388b77dab96..f112d5f61105 100644 --- a/pkgs/applications/networking/instant-messengers/scudcloud/default.nix +++ b/pkgs/applications/networking/instant-messengers/scudcloud/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, python3Packages }: -let version = "1.58"; +let version = "1.63"; in python3Packages.buildPythonPackage { name = "scudcloud-${version}"; src = fetchurl { url = "https://github.com/raelgc/scudcloud/archive/v${version}.tar.gz"; - sha256 = "1j84qdc2j3dvl1nhrjqm0blc8ww723p9a6hqprkkp8alw77myq1l"; + sha256 = "e0d1cb72115d0fda17db92d28be51558ad8fe250972683fac3086dbe8d350d22"; }; propagatedBuildInputs = with python3Packages; [ pyqt5 dbus-python ]; diff --git a/pkgs/applications/networking/ipfs-migrator/default.nix b/pkgs/applications/networking/ipfs-migrator/default.nix new file mode 100644 index 000000000000..6a4afdb1c17d --- /dev/null +++ b/pkgs/applications/networking/ipfs-migrator/default.nix @@ -0,0 +1,27 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "ipfs-migrator-${version}"; + version = "6"; + + goPackagePath = "github.com/ipfs/fs-repo-migrations"; + + goDeps = ./deps.nix; + + src = fetchFromGitHub { + owner = "ipfs"; + repo = "fs-repo-migrations"; + rev = "a89e9769b9cac25ad9ca31c7e9a4445c7966d35b"; + sha256 = "0x4mbkx7wlqjmkg6852hljq947v9y9k3hjd5yfj7kka1hpvxd7bn"; + }; + + patches = [ ./lru-repo-path-fix.patch ]; + + meta = with stdenv.lib; { + description = "Migration tool for ipfs repositories"; + homepage = https://ipfs.io/; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ elitak ]; + }; +} diff --git a/pkgs/applications/networking/ipfs-migrator/deps.nix b/pkgs/applications/networking/ipfs-migrator/deps.nix new file mode 100644 index 000000000000..2d52ca0ef70a --- /dev/null +++ b/pkgs/applications/networking/ipfs-migrator/deps.nix @@ -0,0 +1,56 @@ +[ + { + goPackagePath = "github.com/dustin/go-humanize"; + fetch = { + type = "git"; + url = https://github.com/dustin/go-humanize; + rev = "79e699ccd02f240a1f1fbbdcee7e64c1c12e41aa"; + sha256 = "0awfqszgjw8qrdw31v74jnvj1jbp7czhd8aq59j57yyj4hy50fzj"; + }; + } + { + goPackagePath = "github.com/jbenet/goprocess"; + fetch = { + type = "git"; + url = https://github.com/jbenet/goprocess; + rev = "b497e2f366b8624394fb2e89c10ab607bebdde0b"; + sha256 = "1lnvkzki7vnqn5c4m6bigk0k85haicmg27w903kwg30rdvblm82s"; + }; + } + { + goPackagePath = "github.com/jbenet/go-random"; + fetch = { + type = "git"; + url = https://github.com/jbenet/go-random; + rev = "384f606e91f542a98e779e652eed88051618f0f7"; + sha256 = "0gcshzl9n3apzc0jaxqrjsc038yfrzfyhpdqgbpcnajin83l2msa"; + }; + } + { + goPackagePath = "github.com/jbenet/go-random-files"; + fetch = { + type = "git"; + url = https://github.com/jbenet/go-random-files; + rev = "737479700b40b4b50e914e963ce8d9d44603e3c8"; + sha256 = "1klpdc4qkrfy31r7qh00fcz42blswzabmcnry9byd5adhszxj9bw"; + }; + } + { + goPackagePath = "github.com/hashicorp/golang-lru"; + fetch = { + type = "git"; + url = https://github.com/hashicorp/golang-lru; + rev = "0a025b7e63adc15a622f29b0b2c4c3848243bbf6"; + sha256 = "1iq7lbpsz7ks052mpznmkf8s4k43p51z4dik2n9ivrxk666q2wxi"; + }; + } + { + goPackagePath = "golang.org/x/net"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/net"; + rev = "71a035914f99bb58fe82eac0f1289f10963d876c"; + sha256 = "06m16c9vkwc8m2mcxcxa7p8mb26ikc810lgzd5m8k1r6lp3hc8wm"; + }; + } +] diff --git a/pkgs/applications/networking/ipfs-migrator/lru-repo-path-fix.patch b/pkgs/applications/networking/ipfs-migrator/lru-repo-path-fix.patch new file mode 100644 index 000000000000..a933a7b5358b --- /dev/null +++ b/pkgs/applications/networking/ipfs-migrator/lru-repo-path-fix.patch @@ -0,0 +1,13 @@ +diff --git a/ipfs-1-to-2/go-datastore/lru/datastore.go b/ipfs-1-to-2/go-datastore/lru/datastore.go +index 7eb18eb..cd8dcb7 100644 +--- a/ipfs-1-to-2/go-datastore/lru/datastore.go ++++ b/ipfs-1-to-2/go-datastore/lru/datastore.go +@@ -3,7 +3,7 @@ package lru + import ( + "errors" + +- lru "github.com/ipfs/fs-repo-migrations/ipfs-1-to-2/golang-lru" ++ lru "github.com/hashicorp/golang-lru" + + ds "github.com/ipfs/fs-repo-migrations/ipfs-1-to-2/go-datastore" + dsq "github.com/ipfs/fs-repo-migrations/ipfs-1-to-2/go-datastore/query" diff --git a/pkgs/applications/networking/ipfs/default.nix b/pkgs/applications/networking/ipfs/default.nix index ba0f557d0ffc..2c38965e100a 100644 --- a/pkgs/applications/networking/ipfs/default.nix +++ b/pkgs/applications/networking/ipfs/default.nix @@ -2,15 +2,15 @@ buildGoPackage rec { name = "ipfs-${version}"; - version = "0.4.10"; - rev = "4679f806bd00c0a5299c22c82d1fbfdbad928e6d"; + version = "0.4.11"; + rev = "v${version}"; goPackagePath = "github.com/ipfs/go-ipfs"; extraSrcPaths = [ (fetchgx { inherit name src; - sha256 = "1khlsahv9vqx3h2smif5wdyb56jrza415hqid7883pqimfi66g3x"; + sha256 = "1n8xr9xg23wm255zjm7nxd761xapmsv11a0giks2gaibh4nps1jl"; }) ]; @@ -18,7 +18,7 @@ buildGoPackage rec { owner = "ipfs"; repo = "go-ipfs"; inherit rev; - sha256 = "1j3az0nhjisb5dxp1a4g8w17y17xjikvcsy4qrg0fm43ybpkhhvw"; + sha256 = "1qi87sq490xpj4mip1d30x4v77gkacnw4idm0mwla92pg44v6wh9"; }; meta = with stdenv.lib; { diff --git a/pkgs/applications/networking/irc/quassel/default.nix b/pkgs/applications/networking/irc/quassel/default.nix index d631f4aa2146..78646f7a8b2f 100644 --- a/pkgs/applications/networking/irc/quassel/default.nix +++ b/pkgs/applications/networking/irc/quassel/default.nix @@ -65,6 +65,9 @@ in with stdenv; mkDerivation rec { ++ edf withKDE "WITH_KDE"; preFixup = + lib.optionalString daemon '' + wrapProgram "$out/bin/quasselcore" --suffix PATH : "${qtbase.bin}/bin" + '' + lib.optionalString buildClient '' wrapProgram "$out/bin/quassel${lib.optionalString client "client"}" \ --prefix GIO_EXTRA_MODULES : "${dconf}/lib/gio/modules" diff --git a/pkgs/applications/networking/irc/weechat/default.nix b/pkgs/applications/networking/irc/weechat/default.nix index e9484044fcc6..49cbe29eaf22 100644 --- a/pkgs/applications/networking/irc/weechat/default.nix +++ b/pkgs/applications/networking/irc/weechat/default.nix @@ -21,12 +21,12 @@ let in stdenv.mkDerivation rec { - version = "1.9"; + version = "1.9.1"; name = "weechat-${version}"; src = fetchurl { url = "http://weechat.org/files/src/weechat-${version}.tar.bz2"; - sha256 = "0xfnhaxmvxdxs3ic0qs5lwq3yl4pi5ib99p0p5lv3v2vldqlm4lc"; + sha256 = "1kgi079bq4n0wb7hc7mz8p7ay1b2m0a4wpvb92sfsxrnh10qr5m1"; }; outputs = [ "out" "man" ]; diff --git a/pkgs/applications/networking/p2p/qbittorrent/default.nix b/pkgs/applications/networking/p2p/qbittorrent/default.nix index 3baa5a8e480d..9b6f2f1f1bb1 100644 --- a/pkgs/applications/networking/p2p/qbittorrent/default.nix +++ b/pkgs/applications/networking/p2p/qbittorrent/default.nix @@ -6,15 +6,15 @@ }: assert guiSupport -> (dbus_libs != null); - with stdenv.lib; + stdenv.mkDerivation rec { name = "qbittorrent-${version}"; - version = "3.3.15"; + version = "3.3.16"; src = fetchurl { url = "mirror://sourceforge/qbittorrent/${name}.tar.xz"; - sha256 = "1bnfnbkdg0088h25zzhlpcdh30y0k1m76bkhjsj1aali765c1fx7"; + sha256 = "0mxyn2pajvb55bhcaz55v64p2xzy15p0yy174s62b5y3f8cac27a"; }; nativeBuildInputs = [ pkgconfig which ]; @@ -33,11 +33,7 @@ stdenv.mkDerivation rec { (if webuiSupport then "" else "--disable-webui") ] ++ optional debugSupport "--enable-debug"; - # The lrelease binary is named lrelease instead of lrelease-qt4 - patches = [ ./fix-lrelease.patch ]; - - # https://github.com/qbittorrent/qBittorrent/issues/1992 - enableParallelBuilding = false; + enableParallelBuilding = true; meta = { description = "Free Software alternative to µtorrent"; diff --git a/pkgs/applications/networking/p2p/qbittorrent/fix-lrelease.patch b/pkgs/applications/networking/p2p/qbittorrent/fix-lrelease.patch deleted file mode 100644 index a906803e4336..000000000000 --- a/pkgs/applications/networking/p2p/qbittorrent/fix-lrelease.patch +++ /dev/null @@ -1,18 +0,0 @@ -diff --git a/qm_gen.pri b/qm_gen.pri -index 5454440..2d5990c 100644 ---- a/qm_gen.pri -+++ b/qm_gen.pri -@@ -5,12 +5,7 @@ isEmpty(QMAKE_LRELEASE) { - win32|os2:QMAKE_LRELEASE = $$[QT_INSTALL_BINS]\\lrelease.exe - else:QMAKE_LRELEASE = $$[QT_INSTALL_BINS]/lrelease - unix { -- equals(QT_MAJOR_VERSION, 4) { -- !exists($$QMAKE_LRELEASE) { QMAKE_LRELEASE = lrelease-qt4 } -- } -- equals(QT_MAJOR_VERSION, 5) { -- !exists($$QMAKE_LRELEASE) { QMAKE_LRELEASE = lrelease-qt5 } -- } -+ !exists($$QMAKE_LRELEASE) { QMAKE_LRELEASE = lrelease } - } else { - !exists($$QMAKE_LRELEASE) { QMAKE_LRELEASE = lrelease } - } diff --git a/pkgs/applications/networking/sniffers/ettercap/default.nix b/pkgs/applications/networking/sniffers/ettercap/default.nix index cc8e5dc4de08..13d536ccf1bb 100644 --- a/pkgs/applications/networking/sniffers/ettercap/default.nix +++ b/pkgs/applications/networking/sniffers/ettercap/default.nix @@ -1,5 +1,6 @@ -{ stdenv, fetchFromGitHub, cmake, libpcap, libnet, zlib, curl, pcre, - openssl, ncurses, glib, gtk2, atk, pango, flex, bison }: +{ stdenv, fetchFromGitHub, cmake, libpcap, libnet, zlib, curl, pcre +, openssl, ncurses, glib, gtk2, atk, pango, flex, bison +, fetchpatch }: stdenv.mkDerivation rec { name = "ettercap-${version}"; @@ -12,6 +13,19 @@ stdenv.mkDerivation rec { sha256 = "1kvrzv2f8kxy7pndfadkzv10cs5wsyfkaa1ski20r2mq4wrvd0cd"; }; + patches = [ + (fetchpatch { + name = "CVE-2017-8366.patch"; + url = "https://github.com/Ettercap/ettercap/commit/1083d604930ebb9f350126b83802ecd2cbc17f90.patch"; + sha256 = "1ff6fp8fxisvd3fkkd01y4fjykgcj414kczzpfscdmi52ridwg8m"; + }) + (fetchpatch { + name = "CVE-2017-6430.patch"; + url = "https://github.com/Ettercap/ettercap/commit/7f50c57b2101fe75592c8dc9960883bbd1878bce.patch"; + sha256 = "0s13nc9yzxzp611rixsd1c8aw1b57q2lnvfq8wawxyrw07h7b2j4"; + }) + ]; + buildInputs = [ cmake libpcap libnet zlib curl pcre openssl ncurses glib gtk2 atk pango flex bison diff --git a/pkgs/applications/networking/sync/rclone/default.nix b/pkgs/applications/networking/sync/rclone/default.nix index 6dd6b5ebcedf..ad51703bd6fe 100644 --- a/pkgs/applications/networking/sync/rclone/default.nix +++ b/pkgs/applications/networking/sync/rclone/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "rclone-${version}"; - version = "1.37"; + version = "1.38"; goPackagePath = "github.com/ncw/rclone"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "ncw"; repo = "rclone"; rev = "v${version}"; - sha256 = "0krmdwzl4c68vxpbycqy2xba8vvqbka7xh3k2q6ldxsd8y2rypym"; + sha256 = "0f56qm4lz55anzqf6dmjfywmvqy10zi5cl69zz8lda8lmvrpjm1d"; }; outputs = [ "bin" "out" "man" ]; diff --git a/pkgs/applications/networking/syncthing012/default.nix b/pkgs/applications/networking/syncthing012/default.nix index 5735dd68bcd2..4b5359555f4a 100644 --- a/pkgs/applications/networking/syncthing012/default.nix +++ b/pkgs/applications/networking/syncthing012/default.nix @@ -5,8 +5,6 @@ buildGoPackage rec { version = "0.12.15"; rev = "v${version}"; - buildFlags = "--tags noupgrade,release"; - goPackagePath = "github.com/syncthing/syncthing"; src = fetchFromGitHub { @@ -22,4 +20,8 @@ buildGoPackage rec { # Mostly a cosmetic change sed -i 's,unknown-dev,${version},g' cmd/syncthing/main.go ''; + + preBuild = '' + export buildFlagsArray+=("-tags" "noupgrade release") + ''; } diff --git a/pkgs/applications/office/calligra/2.nix b/pkgs/applications/office/calligra/2.nix new file mode 100644 index 000000000000..76027f29a707 --- /dev/null +++ b/pkgs/applications/office/calligra/2.nix @@ -0,0 +1,55 @@ +{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig, kdelibs4, lcms2, libpng, eigen +, exiv2, boost, sqlite, icu, vc, shared_mime_info, librevenge, libodfgen, libwpg +, libwpd, poppler_qt4, ilmbase, gsl, qca2, marble, libvisio, libmysql, postgresql +, freetds, fftw, glew, libkdcraw, pstoedit, opencolorio, kdepimlibs +, kactivities, okular, git, oxygen-icons5, makeWrapper +# TODO: not found +#, xbase, openjpeg +# TODO: package libWPS, Spnav, m2mml, LibEtonyek +}: + +stdenv.mkDerivation rec { + name = "calligra-2.9.11"; + + src = fetchurl { + url = "mirror://kde/stable/${name}/${name}.tar.xz"; + sha256 = "02gaahp7a7m53n0hvrp3868s8w37b457isxir0z7b4mwhw7jv3di"; + }; + + nativeBuildInputs = [ automoc4 cmake perl pkgconfig makeWrapper ]; + + buildInputs = [ + kdelibs4 lcms2 libpng eigen + exiv2 boost sqlite icu vc shared_mime_info librevenge libodfgen libwpg + libwpd poppler_qt4 ilmbase gsl qca2 marble libvisio libmysql postgresql + freetds fftw glew libkdcraw opencolorio kdepimlibs + kactivities okular git + ]; + + enableParallelBuilding = true; + + postInstall = '' + for i in $out/bin/*; do + wrapProgram $i \ + --prefix PATH ':' "${pstoedit.out}/bin" \ + --prefix XDG_DATA_DIRS ':' "${oxygen-icons5}/share" + done + ''; + + meta = with stdenv.lib; { + description = "A suite of productivity applications"; + longDescription = '' + Calligra Suite is a set of applications written to help + you to accomplish your work. Calligra includes efficient + and capable office components: Words for text processing, + Sheets for computations, Stage for presentations, Plan for + planning, Flow for flowcharts, Kexi for database creation, + Krita for painting and raster drawing, and Karbon for + vector graphics. + ''; + homepage = http://calligra.org; + maintainers = with maintainers; [ phreedom ebzzry ]; + inherit (kdelibs4.meta) platforms; + license = licenses.gpl2; + }; +} diff --git a/pkgs/applications/office/calligra/default.nix b/pkgs/applications/office/calligra/default.nix index 76027f29a707..bec19d675cb0 100644 --- a/pkgs/applications/office/calligra/default.nix +++ b/pkgs/applications/office/calligra/default.nix @@ -1,55 +1,65 @@ -{ stdenv, fetchurl, automoc4, cmake, perl, pkgconfig, kdelibs4, lcms2, libpng, eigen -, exiv2, boost, sqlite, icu, vc, shared_mime_info, librevenge, libodfgen, libwpg -, libwpd, poppler_qt4, ilmbase, gsl, qca2, marble, libvisio, libmysql, postgresql -, freetds, fftw, glew, libkdcraw, pstoedit, opencolorio, kdepimlibs -, kactivities, okular, git, oxygen-icons5, makeWrapper -# TODO: not found -#, xbase, openjpeg -# TODO: package libWPS, Spnav, m2mml, LibEtonyek +{ + mkDerivation, lib, fetchurl, extra-cmake-modules, kdoctools, makeWrapper, + boost, qtwebkit, qtx11extras, shared_mime_info, + breeze-icons, kactivities, karchive, kcodecs, kcompletion, kconfig, kconfigwidgets, + kcoreaddons, kdbusaddons, kdiagram, kguiaddons, khtml, ki18n, + kiconthemes, kitemviews, kjobwidgets, kcmutils, kdelibs4support, kio, kross, + knotifications, knotifyconfig, kparts, ktextwidgets, kwallet, kwidgetsaddons, + kwindowsystem, kxmlgui, sonnet, threadweaver, + kcontacts, akonadi, akonadi-calendar, akonadi-contacts, + eigen, git, gsl, ilmbase, kproperty, kreport, lcms2, marble, libgit2, libodfgen, + librevenge, libvisio, libwpd, libwpg, libwps, okular, openexr, openjpeg, phonon, + poppler, pstoedit, qca-qt5, vc +# TODO: package Spnav, m2mml LibEtonyek, Libqgit2 }: -stdenv.mkDerivation rec { - name = "calligra-2.9.11"; +mkDerivation rec { + pname = "calligra"; + version = "3.0.1"; + name = "${pname}-${version}"; src = fetchurl { - url = "mirror://kde/stable/${name}/${name}.tar.xz"; - sha256 = "02gaahp7a7m53n0hvrp3868s8w37b457isxir0z7b4mwhw7jv3di"; + url = "mirror://kde/stable/${pname}/${version}/${name}.tar.xz"; + sha256 = "1cjdd7sx1zhas6lhw0dzhrnki790jkf93f88wn6z9yrww32dsas5"; }; - nativeBuildInputs = [ automoc4 cmake perl pkgconfig makeWrapper ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools makeWrapper ]; buildInputs = [ - kdelibs4 lcms2 libpng eigen - exiv2 boost sqlite icu vc shared_mime_info librevenge libodfgen libwpg - libwpd poppler_qt4 ilmbase gsl qca2 marble libvisio libmysql postgresql - freetds fftw glew libkdcraw opencolorio kdepimlibs - kactivities okular git + boost qtwebkit qtx11extras shared_mime_info + kactivities karchive kcodecs kcompletion kconfig kconfigwidgets kcoreaddons + kdbusaddons kdiagram kguiaddons khtml ki18n kiconthemes kitemviews + kjobwidgets kcmutils kdelibs4support kio kross knotifications knotifyconfig kparts + ktextwidgets kwallet kwidgetsaddons kwindowsystem kxmlgui sonnet threadweaver + kcontacts akonadi akonadi-calendar akonadi-contacts + eigen git gsl ilmbase kproperty kreport lcms2 marble libgit2 libodfgen librevenge + libvisio libwpd libwpg libwps okular openexr openjpeg phonon poppler qca-qt5 vc ]; - enableParallelBuilding = true; + propagatedUserEnvPkgs = [ kproperty ]; + + NIX_CFLAGS_COMPILE = "-I${ilmbase.dev}/include/OpenEXR"; postInstall = '' for i in $out/bin/*; do wrapProgram $i \ --prefix PATH ':' "${pstoedit.out}/bin" \ - --prefix XDG_DATA_DIRS ':' "${oxygen-icons5}/share" + --prefix XDG_DATA_DIRS ':' "${breeze-icons}/share" done ''; - meta = with stdenv.lib; { + meta = with lib; { description = "A suite of productivity applications"; longDescription = '' Calligra Suite is a set of applications written to help you to accomplish your work. Calligra includes efficient and capable office components: Words for text processing, - Sheets for computations, Stage for presentations, Plan for - planning, Flow for flowcharts, Kexi for database creation, - Krita for painting and raster drawing, and Karbon for + Sheets for computations, Plan for planning, and Karbon for vector graphics. ''; - homepage = http://calligra.org; - maintainers = with maintainers; [ phreedom ebzzry ]; - inherit (kdelibs4.meta) platforms; - license = licenses.gpl2; + homepage = https://www.calligra.org/; + maintainers = with maintainers; [ phreedom ebzzry zraexy ]; + platforms = platforms.linux; + license = with licenses; [ gpl2 lgpl2 ]; }; } diff --git a/pkgs/applications/office/kexi/default.nix b/pkgs/applications/office/kexi/default.nix new file mode 100644 index 000000000000..66aee6bd9628 --- /dev/null +++ b/pkgs/applications/office/kexi/default.nix @@ -0,0 +1,47 @@ +{ + mkDerivation, lib, fetchurl, extra-cmake-modules, kdoctools, + boost, qttools, qtwebkit, + breeze-icons, karchive, kcodecs, kcompletion, kconfig, kconfigwidgets, kcoreaddons, + kcrash, kguiaddons, ki18n, kiconthemes, kitemviews, kio, ktexteditor, ktextwidgets, + kwidgetsaddons, kxmlgui, + kdb, kproperty, kreport, lcms2, libmysql, marble, postgresql +}: + +mkDerivation rec { + pname = "kexi"; + version = "3.0.2"; + name = "${pname}-${version}"; + + src = fetchurl { + url = "mirror://kde/stable/${pname}/src/${name}.tar.xz"; + sha256 = "1fjvjifi5ygx5gs2lzfg22j0x3r7kl4wk5jll09r8gc3dfxaiblf"; + }; + + nativeBuildInputs = [ extra-cmake-modules kdoctools ]; + + buildInputs = [ + boost qttools qtwebkit + breeze-icons karchive kcodecs kcompletion kconfig kconfigwidgets kcoreaddons + kcrash kguiaddons ki18n kiconthemes kitemviews kio ktexteditor ktextwidgets + kwidgetsaddons kxmlgui + kdb kproperty kreport lcms2 libmysql marble postgresql + ]; + + propagatedUserEnvPkgs = [ kproperty ]; + + meta = with lib; { + description = "A open source visual database applications creator, a long-awaited competitor for programs like MS Access or Filemaker"; + longDescription = '' + Kexi is a visual database applications creator. + It can be used for creating database schemas, + inserting data, performing queries, and processing data. + Forms can be created to provide a custom interface to your data. + All database objects - tables, queries and forms - are stored in the database, + making it easy to share data and design. + ''; + homepage = http://kexi-project.org/; + maintainers = with maintainers; [ zraexy ]; + platforms = platforms.linux; + license = with licenses; [ gpl2 lgpl2 ]; + }; +} diff --git a/pkgs/applications/science/biology/bcftools/default.nix b/pkgs/applications/science/biology/bcftools/default.nix index cfd72601d1eb..db12fc00c87c 100644 --- a/pkgs/applications/science/biology/bcftools/default.nix +++ b/pkgs/applications/science/biology/bcftools/default.nix @@ -1,17 +1,18 @@ -{ stdenv, fetchurl, htslib, zlib, bzip2, lzma, perl }: +{ stdenv, fetchurl, htslib, zlib, bzip2, lzma, curl, perl, bash }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "bcftools"; - major = "1.5"; - version = "${major}.0"; + version = "1.6"; src = fetchurl { - url = "https://github.com/samtools/bcftools/releases/download/${major}/bcftools-${major}.tar.bz2"; - sha256 = "0093hkkvxmbwfaa7905s6185jymynvg42kq6sxv7fili11l5mxwz"; + url = "https://github.com/samtools/bcftools/releases/download/${version}/${name}.tar.bz2"; + sha256 = "10prgmf09a13mk18840938ijqgfc9y92hfc7sa2gcv07ddri0c19"; }; - buildInputs = [ zlib bzip2 lzma perl ]; + nativeBuildInputs = [ perl ]; + + buildInputs = [ htslib zlib bzip2 lzma curl ]; makeFlags = [ "HSTDIR=${htslib}" @@ -19,6 +20,16 @@ stdenv.mkDerivation rec { "CC=cc" ]; + preCheck = '' + patchShebangs misc/ + patchShebangs test/ + sed -ie 's|/bin/bash|${bash}/bin/bash|' test/test.pl + ''; + + enableParallelBuilding = true; + + doCheck = true; + meta = with stdenv.lib; { description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants"; license = licenses.mit; diff --git a/pkgs/applications/science/biology/freebayes/builder.sh b/pkgs/applications/science/biology/freebayes/builder.sh deleted file mode 100644 index a9f56e77d7e3..000000000000 --- a/pkgs/applications/science/biology/freebayes/builder.sh +++ /dev/null @@ -1,11 +0,0 @@ -source $stdenv/setup - -unpackPhase - -cd freebayes-* - -make - -mkdir -p $out/bin -cp bin/freebayes bin/bamleftalign $out/bin -cp scripts/* $out/bin diff --git a/pkgs/applications/science/biology/freebayes/default.nix b/pkgs/applications/science/biology/freebayes/default.nix index ef0da619b25a..99d2dfa55ddd 100644 --- a/pkgs/applications/science/biology/freebayes/default.nix +++ b/pkgs/applications/science/biology/freebayes/default.nix @@ -1,21 +1,23 @@ -{ stdenv, fetchFromGitHub, cmake, gcc, zlib}: +{ stdenv, fetchFromGitHub, cmake, gcc, zlib, bzip2, lzma }: stdenv.mkDerivation rec { name = "freebayes-${version}"; - version = "1.1.0"; + version = "2017-08-23"; src = fetchFromGitHub { name = "freebayes-${version}-src"; owner = "ekg"; repo = "freebayes"; - rev = "refs/tags/v${version}"; - sha256 = "0xb8aicb36w9mfs1gq1x7mcp3p82kl7i61d162hfncqzg2npg8rr"; + rev = "8d2b3a060da473e1f4f89be04edfce5cba63f1d3"; + sha256 = "0yyrgk2639lz1yvg4jf0ccahnkic31dy77q05pb3i28rjf37v45z"; fetchSubmodules = true; }; - buildInputs = [ cmake gcc zlib ]; + buildInputs = [ zlib bzip2 lzma ]; - builder = ./builder.sh; + installPhase = '' + install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin + ''; meta = with stdenv.lib; { description = "Bayesian haplotype-based polymorphism discovery and genotyping"; diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index f8391a2d6b3c..640f32671bbd 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -1,21 +1,30 @@ -{ stdenv, fetchurl, zlib, htslib, ncurses ? null }: +{ stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }: stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "samtools"; - major = "1.5"; - version = "${major}.0"; + version = "1.6"; src = fetchurl { - url = "https://github.com/samtools/samtools/releases/download/${major}/samtools-${major}.tar.bz2"; - sha256 = "1xidmv0jmfy7l0kb32hdnlshcxgzi1hmygvig0cqrq1fhckdlhl5"; + url = "https://github.com/samtools/samtools/releases/download/${version}/${name}.tar.bz2"; + sha256 = "17p4vdj2j2qr3b2c0v4100h6cg4jj3zrb4dmdnd9d9aqs74d4p7f"; }; - buildInputs = [ zlib ncurses ]; + nativeBuildInputs = [ perl ]; + + buildInputs = [ zlib ncurses htslib ]; configureFlags = [ "--with-htslib=${htslib}" ] ++ stdenv.lib.optional (ncurses == null) "--without-curses"; + preCheck = '' + patchShebangs test/ + ''; + + enableParallelBuilding = true; + + doCheck = true; + meta = with stdenv.lib; { description = "Tools for manipulating SAM/BAM/CRAM format"; license = licenses.mit; diff --git a/pkgs/applications/science/electronics/caneda/default.nix b/pkgs/applications/science/electronics/caneda/default.nix index 2d6b12a5bb02..8f81a03044be 100644 --- a/pkgs/applications/science/electronics/caneda/default.nix +++ b/pkgs/applications/science/electronics/caneda/default.nix @@ -1,37 +1,20 @@ -{stdenv, fetchgit, qt4, cmake, libxml2, libxslt}: - -let - - srcComponents = fetchgit { - url = git://caneda.git.sourceforge.net/gitroot/caneda/components; - rev = "34cd36b620e0dfc57ba2d2b6168734ea9a2cfa9a"; - sha256 = "840f07921eecbf10e38e44e5c61c716295a16c98fbb75016d9a44e7dfee40e59"; - }; - -in +{stdenv, fetchFromGitHub, cmake, qtbase, qttools, qtsvg, qwt }: stdenv.mkDerivation rec { - name = "caneda-git-2012-02-16"; - - src = fetchgit { - url = git://caneda.git.sourceforge.net/gitroot/caneda/caneda; - rev = "fff9e2f7988fe5d062548cafeda1e5cd660769d1"; - sha256 = "dfbcac97f5a1b41ad9a63392394f37fb294cbf78c576673c9bc4a5370957b2c8"; + name = "caneda-${version}"; + version = "0.3.1"; + + src = fetchFromGitHub { + owner = "Caneda"; + repo = "Caneda"; + rev = version; + sha256 = "0hx8qid50j9xvg2kpbpqmbdyakgyjn6m373m1cvhp70v2gp1v8l2"; }; - hardeningDisable = [ "format" ]; - - buildInputs = [ cmake qt4 libxml2 libxslt ]; - - patches = [ - ./gcc6.patch - ]; + nativeBuildInputs = [ cmake ]; + buildInputs = [ qtbase qttools qtsvg qwt ]; - postInstall = '' - mkdir $out/share/caneda/components - cp -R ${srcComponents}/* $out/share/caneda/components - chmod u+w -R $out/share/caneda/components - ''; + enableParallelBuilding = true; meta = { description = "Open source EDA software focused on easy of use and portability"; diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index 4ebc25fa4e8f..65b1537d59b1 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -66,5 +66,6 @@ stdenv.mkDerivation rec { license = stdenv.lib.licenses.gpl2; maintainers = with stdenv.lib.maintainers; [viric]; platforms = with stdenv.lib.platforms; linux; + hydraPlatforms = []; # 'output limit exceeded' error on hydra }; } diff --git a/pkgs/applications/science/logic/tptp/default.nix b/pkgs/applications/science/logic/tptp/default.nix index db7e0c0c9382..16ef277e9300 100644 --- a/pkgs/applications/science/logic/tptp/default.nix +++ b/pkgs/applications/science/logic/tptp/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { name = "TPTP-${version}"; - version = "6.4.0"; + version = "7.0.0"; src = fetchurl { url = [ "http://www.cs.miami.edu/~tptp/TPTP/Distribution/TPTP-v${version}.tgz" - "http://www.cs.miami.edu/~tptp/TPTP/Archive/TPTP-v${version}/TPTP-v${version}.tgz" + "http://www.cs.miami.edu/~tptp/TPTP/Archive/TPTP-v${version}.tgz" ]; - sha256 = "17mnqxnyibmzf5vvbnyhsd010zykqw8ikx4pvyj0x9sfyhpvgfix"; + sha256 = "13rm76lqlgbv15p8as0dpc74z2dfv5xydkhnd0hm3hhi3mn39dk9"; }; buildInputs = [ tcsh yap perl patchelf ]; diff --git a/pkgs/applications/science/machine-learning/torch/torch-distro.nix b/pkgs/applications/science/machine-learning/torch/torch-distro.nix index 5ff510a52ce8..91adb5283fdc 100644 --- a/pkgs/applications/science/machine-learning/torch/torch-distro.nix +++ b/pkgs/applications/science/machine-learning/torch/torch-distro.nix @@ -105,6 +105,7 @@ let installPhase = '' make install-extra $makeFlags ''; + meta.broken = true; }; luafilesystem = buildLuaRocks { @@ -123,6 +124,7 @@ let luaffifb = buildLuaRocks { name = "luaffifb"; src = "${distro_src}/extra/luaffifb"; + meta.broken = true; }; sundown = buildLuaRocks rec { @@ -267,6 +269,7 @@ let preBuild = '' export Torch_DIR=${torch}/share/cmake/torch ''; + meta.broken = true; }; trepl = buildLuaRocks rec { diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 5adece31370e..fd0ff24d58b3 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -7,11 +7,11 @@ }: stdenv.mkDerivation rec { - name = "R-3.4.1"; + name = "R-3.4.2"; src = fetchurl { url = "http://cran.r-project.org/src/base/R-3/${name}.tar.gz"; - sha256 = "0y7wlfk3cn1dxn2mpnxwvsk31s0599crbsyah8srm5pa2mfi7c82"; + sha256 = "0r0cv2kc3x5z9xycpnxx6fbvv22psw2m342jhpslbxkc8g1307lp"; }; buildInputs = [ diff --git a/pkgs/applications/science/math/caffe/default.nix b/pkgs/applications/science/math/caffe/default.nix index 5c6fe9c573d5..cb28d38bf1d0 100644 --- a/pkgs/applications/science/math/caffe/default.nix +++ b/pkgs/applications/science/math/caffe/default.nix @@ -46,9 +46,8 @@ stdenv.mkDerivation rec { propagatedBuildInputs = lib.optional pythonSupport python.pkgs.protobuf; - outputs = [ "out" "bin" ]; - # Don't propagate bin. - outputBin = "out"; + outputs = [ "bin" "out"]; + propagatedBuildOutputs = []; # otherwise propagates out -> bin cycle postInstall = '' # Internal static library. diff --git a/pkgs/applications/science/math/clp/default.nix b/pkgs/applications/science/math/clp/default.nix new file mode 100644 index 000000000000..daa9a53c59a1 --- /dev/null +++ b/pkgs/applications/science/math/clp/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchurl, zlib }: + +stdenv.mkDerivation rec { + version = "1.16.11"; + name = "clp-${version}"; + src = fetchurl { + url = "https://www.coin-or.org/download/source/Clp/Clp-${version}.tgz"; + sha256 = "0fazlqpp845186nmixa9f1xfxqqkdr1xj4va7q29m8594ca4a9dm"; + }; + + propagatedBuildInputs = [ zlib ]; + + doCheck = true; + + checkTarget = "test"; + + meta = { + license = stdenv.lib.licenses.epl10; + homepage = https://projects.coin-or.org/Clp; + description = "An open-source linear programming solver written in C++"; + platforms = stdenv.lib.platforms.all; + maintainers = [ stdenv.lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/applications/science/math/giac/default.nix b/pkgs/applications/science/math/giac/default.nix new file mode 100644 index 000000000000..4ef00d56f182 --- /dev/null +++ b/pkgs/applications/science/math/giac/default.nix @@ -0,0 +1,68 @@ +{ stdenv, fetchurl, texlive, bison, flex +, gmp, mpfr, pari, ntl, gsl, blas, mpfi, liblapackWithAtlas +, readline, gettext, libpng, libao, gfortran, perl +, enableGUI ? false, mesa ? null, xorg ? null, fltk ? null +}: + +assert enableGUI -> mesa != null && xorg != null && fltk != null; + +stdenv.mkDerivation rec { + name = "${attr}-${version}"; + attr = if enableGUI then "giac-with-xcas" else "giac"; + version = "1.4.9"; + + src = fetchurl { + url = "https://www-fourier.ujf-grenoble.fr/~parisse/giac/giac-${version}.tar.bz2"; + sha256 = "1n7xxgpqrsq7cv5wgcmgag6jvxw5wijkf1yv1r5aizlf1rc7dhai"; + }; + + postPatch = '' + for i in doc/*/Makefile*; do + substituteInPlace "$i" --replace "/bin/cp" "cp"; + done; + ''; + + nativeBuildInputs = [ + texlive.combined.scheme-small bison flex + ]; + + # perl is only needed for patchShebangs fixup. + buildInputs = [ + gmp mpfr pari ntl gsl blas mpfi liblapackWithAtlas + readline gettext libpng libao gfortran perl + ] ++ stdenv.lib.optionals enableGUI [ + mesa fltk xorg.libX11 + ]; + + outputs = [ "out" ]; + + enableParallelBuilding = true; + hardeningDisable = [ "format" "bindnow" "relro" ]; + + configureFlags = [ + "--enable-gc" "--enable-png" "--enable-gsl" "--enable-lapack" + "--enable-pari" "--enable-ntl" "--enable-gmpxx" # "--enable-cocoa" + "--enable-ao" + ] ++ stdenv.lib.optionals enableGUI [ + "--enable-gui" "--with-x" + ]; + + postInstall = '' + # example Makefiles contain the full path to some commands + # notably texlive, and we don't want texlive to become a runtime + # dependency + for file in $(find $out -name Makefile) ; do + sed -i "s@/nix/store/[^/]*/bin/@@" "$file" ; + done; + ''; + + meta = with stdenv.lib; { + description = "A free computer algebra system (CAS)"; + homepage = "https://www-fourier.ujf-grenoble.fr/~parisse/giac.html"; + license = licenses.gpl3Plus; + ## xcas is buildable on darwin but there are specific instructions I could + ## not test + platforms = platforms.linux; + maintainers = [ maintainers.symphorien ]; + }; +} diff --git a/pkgs/applications/science/math/gmsh/default.nix b/pkgs/applications/science/math/gmsh/default.nix index b55961205922..bb24ac9bd499 100644 --- a/pkgs/applications/science/math/gmsh/default.nix +++ b/pkgs/applications/science/math/gmsh/default.nix @@ -1,25 +1,27 @@ -{ stdenv, fetchurl, cmake, blas, liblapack, gfortran, fltk, libjpeg +{ stdenv, fetchurl, cmake, blas, liblapack, gfortran, gmm, fltk, libjpeg , zlib, mesa, mesa_glu, xorg }: -let version = "2.12.0"; in +let version = "3.0.5"; in stdenv.mkDerivation { name = "gmsh-${version}"; src = fetchurl { url = "http://gmsh.info/src/gmsh-${version}-source.tgz"; - sha256 = "02cx2mfbxx6m18s54z4yzbk4ybch3v9489z7cr974y8y0z42xgbz"; + sha256 = "ae39ed81178d94b76990b8c89b69a5ded8910fd8f7426b800044d00373d12a93"; }; # The original CMakeLists tries to use some version of the Lapack lib # that is supposed to work without Fortran but didn't for me. patches = [ ./CMakeLists.txt.patch ]; - buildInputs = [ cmake blas liblapack gfortran fltk libjpeg zlib mesa + buildInputs = [ cmake blas liblapack gfortran gmm fltk libjpeg zlib mesa mesa_glu xorg.libXrender xorg.libXcursor xorg.libXfixes xorg.libXext xorg.libXft xorg.libXinerama xorg.libX11 xorg.libSM xorg.libICE ]; + enableParallelBuilding = true; + meta = { description = "A three-dimensional finite element mesh generator"; homepage = http://gmsh.info/; diff --git a/pkgs/applications/science/math/mathematica/default.nix b/pkgs/applications/science/math/mathematica/default.nix index 1e23cfea27fc..1c86097f2ee4 100644 --- a/pkgs/applications/science/math/mathematica/default.nix +++ b/pkgs/applications/science/math/mathematica/default.nix @@ -3,6 +3,7 @@ , patchelf , requireFile , alsaLib +, dbus , fontconfig , freetype , gcc @@ -12,6 +13,7 @@ , opencv , openssl , unixODBC +, xkeyboard_config , xorg , zlib , libxml2 @@ -26,7 +28,7 @@ let throw "Mathematica requires i686-linux or x86_64 linux"; in stdenv.mkDerivation rec { - version = "11.0.1"; + version = "11.2.0"; name = "mathematica-${version}"; @@ -37,7 +39,7 @@ stdenv.mkDerivation rec { already part of the store. Find the file on your Mathematica CD and add it to the nix store with nix-store --add-fixed sha256 <FILE>. ''; - sha256 = "1qqwz8gbw74rnnyirpbdanwx3d25s4x0i4zc7bs6kp959x66cdkw"; + sha256 = "4a1293cc1c404303aa1cab1bd273c7be151d37ac5ed928fbbb18e9c5ab2d8df9"; }; buildInputs = [ @@ -45,6 +47,7 @@ stdenv.mkDerivation rec { patchelf alsaLib coreutils + dbus fontconfig freetype gcc.cc @@ -54,6 +57,7 @@ stdenv.mkDerivation rec { opencv openssl unixODBC + xkeyboard_config libxml2 libuuid zlib @@ -100,6 +104,12 @@ stdenv.mkDerivation rec { for path in mathematica MathKernel Mathematica WolframKernel wolfram math; do sed -i -e 's#export LD_LIBRARY_PATH$#export LD_LIBRARY_PATH=${zlib}/lib:\''${LD_LIBRARY_PATH}#' $path done + + # Fix xkeyboard config path for Qt + for path in mathematica Mathematica; do + line=$(grep -n QT_PLUGIN_PATH $path | sed 's/:.*//') + sed -i -e "$line iexport QT_XKB_CONFIG_ROOT=\"${xkeyboard_config}/share/X11/xkb\"" $path + done ''; preFixup = '' diff --git a/pkgs/applications/science/misc/gplates/default.nix b/pkgs/applications/science/misc/gplates/default.nix index 05e0091108aa..c8f89c398b12 100644 --- a/pkgs/applications/science/misc/gplates/default.nix +++ b/pkgs/applications/science/misc/gplates/default.nix @@ -24,5 +24,6 @@ stdenv.mkDerivation rec { homepage = https://www.gplates.org; license = licenses.gpl2; platforms = platforms.all; + broken = true; }; } diff --git a/pkgs/applications/science/misc/openmodelica/default.nix b/pkgs/applications/science/misc/openmodelica/default.nix index 8d673a15fa8e..9e9a10a011ec 100644 --- a/pkgs/applications/science/misc/openmodelica/default.nix +++ b/pkgs/applications/science/misc/openmodelica/default.nix @@ -50,6 +50,7 @@ stdenv.mkDerivation { license = licenses.gpl3; maintainers = with maintainers; [ smironov ]; platforms = platforms.linux; + broken = true; }; } diff --git a/pkgs/applications/version-management/fossil/default.nix b/pkgs/applications/version-management/fossil/default.nix index cefdc1108bfc..80c4401f1708 100644 --- a/pkgs/applications/version-management/fossil/default.nix +++ b/pkgs/applications/version-management/fossil/default.nix @@ -2,15 +2,16 @@ , tcllib, withJson ? true}: stdenv.mkDerivation rec { - name = "fossil-2.2"; + name = "fossil-${version}"; + version = "2.3"; src = fetchurl { - urls = + urls = [ - https://www.fossil-scm.org/index.html/uv/fossil-src-2.2.tar.gz + "https://www.fossil-scm.org/index.html/uv/fossil-src-${version}.tar.gz" ]; name = "${name}.tar.gz"; - sha256 = "0wfgacfg29dkl0c3l1rp5ji0kraa64gcbg5lh8p4m7mqdqcq53wv"; + sha256 = "0paalvb4rdyr79v6rwspaha5n4dqb92df9irijha13m3apsanwzh"; }; buildInputs = [ zlib openssl readline sqlite which ed ] diff --git a/pkgs/applications/version-management/git-and-tools/git/default.nix b/pkgs/applications/version-management/git-and-tools/git/default.nix index 46c48fd1579f..fcf35a9ca34e 100644 --- a/pkgs/applications/version-management/git-and-tools/git/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git/default.nix @@ -13,7 +13,7 @@ }: let - version = "2.14.1"; + version = "2.14.2"; svn = subversionClient.override { perlBindings = true; }; in @@ -22,7 +22,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://www.kernel.org/pub/software/scm/git/git-${version}.tar.xz"; - sha256 = "1iic3wiihxp3l3k6d4z886v3869c3dzgddjxnd5124wy1rnlqwkg"; + sha256 = "18f70gfzwqd210806hmf94blcd7yv5h9ka6xqkpd2jhijqwp5sah"; }; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/version-management/git-and-tools/tig/default.nix b/pkgs/applications/version-management/git-and-tools/tig/default.nix index f5e5fddd3b72..bed0ef358271 100644 --- a/pkgs/applications/version-management/git-and-tools/tig/default.nix +++ b/pkgs/applications/version-management/git-and-tools/tig/default.nix @@ -4,14 +4,14 @@ stdenv.mkDerivation rec { pname = "tig"; - version = "2.2.2"; + version = "2.3.0"; name = "${pname}-${version}"; src = fetchFromGitHub { owner = "jonas"; repo = pname; rev = name; - sha256 = "1zbj4pfcnj1d0zfhx5jw9x7f2hz99mry20bgyyvrij2vj8gf5vk4"; + sha256 = "04qw3fyamm1lka9vh7adrkr2mcnwcch9ya5sph51jx6d4jz1lih5"; }; nativeBuildInputs = [ makeWrapper autoreconfHook asciidoc xmlto docbook_xsl docbook_xml_dtd_45 findXMLCatalogs pkgconfig ]; diff --git a/pkgs/applications/version-management/gitaly/Gemfile b/pkgs/applications/version-management/gitaly/Gemfile index a12e23a57b51..88b7120d6f9a 100644 --- a/pkgs/applications/version-management/gitaly/Gemfile +++ b/pkgs/applications/version-management/gitaly/Gemfile @@ -1,5 +1,5 @@ source 'https://rubygems.org' gem 'github-linguist', '~> 4.7.0', require: 'linguist' -gem 'gitaly-proto', '~> 0.31.0', require: 'gitaly' +gem 'gitaly-proto', '~> 0.37.0', require: 'gitaly' gem 'activesupport' diff --git a/pkgs/applications/version-management/gitaly/Gemfile.lock b/pkgs/applications/version-management/gitaly/Gemfile.lock index 9d2f03b531e5..68433fc6878e 100644 --- a/pkgs/applications/version-management/gitaly/Gemfile.lock +++ b/pkgs/applications/version-management/gitaly/Gemfile.lock @@ -13,7 +13,7 @@ GEM escape_utils (1.1.1) faraday (0.12.2) multipart-post (>= 1.2, < 3) - gitaly-proto (0.31.0) + gitaly-proto (0.37.0) google-protobuf (~> 3.1) grpc (~> 1.0) github-linguist (4.7.6) @@ -21,7 +21,7 @@ GEM escape_utils (~> 1.1.0) mime-types (>= 1.19) rugged (>= 0.23.0b) - google-protobuf (3.3.0) + google-protobuf (3.4.0.2) googleauth (0.5.3) faraday (~> 0.12) jwt (~> 1.4) @@ -30,7 +30,7 @@ GEM multi_json (~> 1.11) os (~> 0.9) signet (~> 0.7) - grpc (1.4.5) + grpc (1.6.0) google-protobuf (~> 3.1) googleauth (~> 0.5.1) i18n (0.8.1) @@ -63,8 +63,8 @@ PLATFORMS DEPENDENCIES activesupport - gitaly-proto (~> 0.31.0) + gitaly-proto (~> 0.37.0) github-linguist (~> 4.7.0) BUNDLED WITH - 1.15.3 + 1.15.4 diff --git a/pkgs/applications/version-management/gitaly/default.nix b/pkgs/applications/version-management/gitaly/default.nix index ff6555ad8f05..ba8831d370c7 100644 --- a/pkgs/applications/version-management/gitaly/default.nix +++ b/pkgs/applications/version-management/gitaly/default.nix @@ -7,14 +7,14 @@ let gemdir = ./.; }; in buildGoPackage rec { - version = "0.35.0"; + version = "0.38.0"; name = "gitaly-${version}"; src = fetchFromGitLab { owner = "gitlab-org"; repo = "gitaly"; rev = "v${version}"; - sha256 = "0h3gh4y571wrnnsg5wpi67psih8yssaw24v3vrcpqpkz5linj7pl"; + sha256 = "02s5gjxbjvm990n4h5zkyqj71a9mp4yj83hfl8mma0g7gx00icsf"; }; goPackagePath = "gitlab.com/gitlab-org/gitaly"; diff --git a/pkgs/applications/version-management/gitaly/gemset.nix b/pkgs/applications/version-management/gitaly/gemset.nix index 06ba56e6b9a9..6dc3eb596665 100644 --- a/pkgs/applications/version-management/gitaly/gemset.nix +++ b/pkgs/applications/version-management/gitaly/gemset.nix @@ -54,10 +54,10 @@ dependencies = ["google-protobuf" "grpc"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1n5bpclizxc42m5kbrhdgsb0ddkl47d0rgmcya5b6sv8qbclkkds"; + sha256 = "1nqp9ib00q55ig8zf1r6ldf3xkqw0874ra1mbcsm8sl46l84lx11"; type = "gem"; }; - version = "0.31.0"; + version = "0.37.0"; }; github-linguist = { dependencies = ["charlock_holmes" "escape_utils" "mime-types" "rugged"]; @@ -71,10 +71,10 @@ google-protobuf = { source = { remotes = ["https://rubygems.org"]; - sha256 = "1q0ka7x53b9vx4wdb2jdvwxxpb5i5ns7fhqb9zgbrp8yy1bg9m9p"; + sha256 = "1jh8axm5m75rvdf2i3s24pmi7p613armh9vk3p1d0ryfx159mqkl"; type = "gem"; }; - version = "3.3.0"; + version = "3.4.0.2"; }; googleauth = { dependencies = ["faraday" "jwt" "logging" "memoist" "multi_json" "os" "signet"]; @@ -89,10 +89,10 @@ dependencies = ["google-protobuf" "googleauth"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1zhci260088zlghpaz6ania1blz1dd7lgklsjnqk1vcymhpr6b38"; + sha256 = "056ipqai887x5jpbgcc215kdi0lfqjzcjbx3hx11cjrfww01zc52"; type = "gem"; }; - version = "1.4.5"; + version = "1.6.0"; }; i18n = { source = { diff --git a/pkgs/applications/version-management/gitlab-shell/default.nix b/pkgs/applications/version-management/gitlab-shell/default.nix index 590070f04a2e..1fdb529d9ac4 100644 --- a/pkgs/applications/version-management/gitlab-shell/default.nix +++ b/pkgs/applications/version-management/gitlab-shell/default.nix @@ -1,14 +1,14 @@ { stdenv, ruby, bundler, fetchFromGitLab, go }: stdenv.mkDerivation rec { - version = "5.8.0"; + version = "5.9.0"; name = "gitlab-shell-${version}"; srcs = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-shell"; rev = "v${version}"; - sha256 = "1zqd7lys309ylbg45vm1apyx9r82kq1drwinr3di2ybb64v3z2q8"; + sha256 = "1zjlwivksaqlfxxhxjgpqa3293nhijw76fj7nv0l11820wplc7yf"; }; buildInputs = [ diff --git a/pkgs/applications/version-management/gitlab/Gemfile b/pkgs/applications/version-management/gitlab/Gemfile index 5a38c956be10..97af3413b156 100644 --- a/pkgs/applications/version-management/gitlab/Gemfile +++ b/pkgs/applications/version-management/gitlab/Gemfile @@ -16,7 +16,7 @@ gem 'mysql2', '~> 0.4.5', group: :mysql gem 'pg', '~> 0.18.2', group: :postgres gem 'rugged', '~> 0.26.0' -gem 'grape-route-helpers', '~> 2.0.0' +gem 'grape-route-helpers', '~> 2.1.0' gem 'faraday', '~> 0.12' @@ -31,7 +31,7 @@ gem 'omniauth-cas3', '~> 1.1.4' gem 'omniauth-facebook', '~> 4.0.0' gem 'omniauth-github', '~> 1.1.1' gem 'omniauth-gitlab', '~> 1.0.2' -gem 'omniauth-google-oauth2', '~> 0.4.1' +gem 'omniauth-google-oauth2', '~> 0.5.2' gem 'omniauth-kerberos', '~> 0.3.0', group: :kerberos gem 'omniauth-oauth2-generic', '~> 0.2.2' gem 'omniauth-saml', '~> 1.7.0' @@ -64,7 +64,7 @@ gem 'gpgme' # LDAP Auth # GitLab fork with several improvements to original library. For full list of changes # see https://github.com/intridea/omniauth-ldap/compare/master...gitlabhq:master -gem 'gitlab_omniauth-ldap', '~> 2.0.3', require: 'omniauth-ldap' +gem 'gitlab_omniauth-ldap', '~> 2.0.4', require: 'omniauth-ldap' gem 'net-ldap' # Git Wiki @@ -76,7 +76,7 @@ gem 'gollum-rugged_adapter', '~> 0.4.4', require: false gem 'github-linguist', '~> 4.7.0', require: 'linguist' # API -gem 'grape', '~> 0.19.2' +gem 'grape', '~> 1.0' gem 'grape-entity', '~> 0.6.0' gem 'rack-cors', '~> 0.4.0', require: 'rack/cors' @@ -128,7 +128,7 @@ gem 'asciidoctor-plantuml', '0.0.7' gem 'rouge', '~> 2.0' gem 'truncato', '~> 0.7.9' gem 'bootstrap_form', '~> 2.7.0' -gem 'nokogiri', '~> 1.8.0' +gem 'nokogiri', '~> 1.8.1' # Diffs gem 'diffy', '~> 3.1.0' @@ -141,8 +141,6 @@ end # State machine gem 'state_machines-activerecord', '~> 0.4.0' -# Run events after state machine commits -gem 'after_commit_queue', '~> 1.3.0' # Issue tags gem 'acts-as-taggable-on', '~> 4.0' @@ -183,7 +181,7 @@ gem 'connection_pool', '~> 2.0' gem 'hipchat', '~> 1.5.0' # JIRA integration -gem 'jira-ruby', '~> 1.1.2' +gem 'jira-ruby', '~> 1.4' # Flowdock integration gem 'gitlab-flowdock-git-hook', '~> 1.0.1' @@ -206,9 +204,6 @@ gem 'kubeclient', '~> 2.2.0' # d3 gem 'd3_rails', '~> 3.5.0' -# underscore-rails -gem 'underscore-rails', '~> 1.8.0' - # Sanitize user input gem 'sanitize', '~> 2.0' gem 'babosa', '~> 1.0.2' @@ -229,7 +224,7 @@ gem 'ace-rails-ap', '~> 4.1.0' gem 'mousetrap-rails', '~> 1.4.6' # Detect and convert string character encoding -gem 'charlock_holmes', '~> 0.7.3' +gem 'charlock_holmes', '~> 0.7.5' # Faster JSON gem 'oj', '~> 2.17.4' @@ -329,7 +324,7 @@ group :development, :test do # Generate Fake data gem 'ffaker', '~> 2.4' - gem 'capybara', '~> 2.6.2' + gem 'capybara', '~> 2.15.0' gem 'capybara-screenshot', '~> 1.0.0' gem 'poltergeist', '~> 1.9.0' @@ -339,6 +334,7 @@ group :development, :test do gem 'rubocop', '~> 0.49.1', require: false gem 'rubocop-rspec', '~> 1.15.1', require: false + gem 'rubocop-gitlab-security', '~> 0.1.0', require: false gem 'scss_lint', '~> 0.54.0', require: false gem 'haml_lint', '~> 0.26.0', require: false gem 'simplecov', '~> 0.14.0', require: false @@ -352,7 +348,9 @@ group :development, :test do gem 'activerecord_sane_schema_dumper', '0.2' - gem 'stackprof', '~> 0.2.10' + gem 'stackprof', '~> 0.2.10', require: false + + gem 'simple_po_parser', '~> 1.1.2', require: false end group :test do @@ -394,12 +392,12 @@ gem 'net-ssh', '~> 4.1.0' # Required for ED25519 SSH host key support group :ed25519 do gem 'rbnacl-libsodium' - gem 'rbnacl', '~> 3.2' + gem 'rbnacl', '~> 4.0' gem 'bcrypt_pbkdf', '~> 1.0' end # Gitaly GRPC client -gem 'gitaly', '~> 0.26.0' +gem 'gitaly-proto', '~> 0.33.0', require: 'gitaly' gem 'toml-rb', '~> 0.3.15', require: false @@ -409,5 +407,6 @@ gem 'flipper-active_record', '~> 0.10.2' # Structured logging gem 'lograge', '~> 0.5' +gem 'grape_logging', '~> 1.7' gem 'activerecord-nulldb-adapter' diff --git a/pkgs/applications/version-management/gitlab/Gemfile.lock b/pkgs/applications/version-management/gitlab/Gemfile.lock index d729b62d8f9a..61c5335962b0 100644 --- a/pkgs/applications/version-management/gitlab/Gemfile.lock +++ b/pkgs/applications/version-management/gitlab/Gemfile.lock @@ -48,8 +48,6 @@ GEM ice_nine (~> 0.11.0) memoizable (~> 0.4.0) addressable (2.3.8) - after_commit_queue (1.3.0) - activerecord (>= 3.0) akismet (2.0.0) allocations (1.0.5) arel (6.0.4) @@ -104,9 +102,9 @@ GEM bundler (~> 1.2) thor (~> 0.18) byebug (9.0.6) - capybara (2.6.2) + capybara (2.15.1) addressable - mime-types (>= 1.16) + mini_mime (>= 0.1.3) nokogiri (>= 1.3.3) rack (>= 1.0.0) rack-test (>= 0.5.4) @@ -119,7 +117,7 @@ GEM activesupport (>= 4.0.0) mime-types (>= 1.16) cause (0.1) - charlock_holmes (0.7.3) + charlock_holmes (0.7.5) chronic (0.10.2) chronic_duration (0.10.6) numerizer (~> 0.1.1) @@ -207,7 +205,7 @@ GEM multi_json fast_gettext (1.4.0) ffaker (2.4.0) - ffi (1.9.10) + ffi (1.9.18) flay (2.8.1) erubis (~> 2.7.0) path_expander (~> 1.0) @@ -279,7 +277,7 @@ GEM po_to_json (>= 1.0.0) rails (>= 3.2.0) gherkin-ruby (0.3.2) - gitaly (0.26.0) + gitaly-proto (0.33.0) google-protobuf (~> 3.1) grpc (~> 1.0) github-linguist (4.7.6) @@ -298,7 +296,7 @@ GEM mime-types (>= 1.16, < 3) posix-spawn (~> 0.3) gitlab-markup (1.5.1) - gitlab_omniauth-ldap (2.0.3) + gitlab_omniauth-ldap (2.0.4) net-ldap (~> 0.16) omniauth (~> 1.3) pyu-ruby-sasl (>= 0.0.3.3, < 0.1) @@ -334,7 +332,7 @@ GEM multi_json (~> 1.10) retriable (~> 1.4) signet (~> 0.6) - google-protobuf (3.3.0) + google-protobuf (3.4.0.2) googleauth (0.5.1) faraday (~> 0.9) jwt (~> 1.4) @@ -345,12 +343,9 @@ GEM signet (~> 0.7) gpgme (2.0.13) mini_portile2 (~> 2.1) - grape (0.19.2) + grape (1.0.0) activesupport builder - hashie (>= 2.1.0) - multi_json (>= 1.3.2) - multi_xml (>= 0.5.2) mustermann-grape (~> 1.0.0) rack (>= 1.3.0) rack-accept @@ -358,11 +353,13 @@ GEM grape-entity (0.6.0) activesupport multi_json (>= 1.3.2) - grape-route-helpers (2.0.0) + grape-route-helpers (2.1.0) activesupport - grape (~> 0.16, >= 0.16.0) + grape (>= 0.16.0) rake - grpc (1.4.0) + grape_logging (1.7.0) + grape + grpc (1.4.5) google-protobuf (~> 3.1) googleauth (~> 0.5.1) haml (4.0.7) @@ -378,7 +375,7 @@ GEM thor tilt hashdiff (0.3.4) - hashie (3.5.5) + hashie (3.5.6) hashie-forbidden_attributes (0.1.1) hashie (>= 3.0) health_check (2.6.0) @@ -411,8 +408,9 @@ GEM cause json ipaddress (0.8.3) - jira-ruby (1.1.2) + jira-ruby (1.4.1) activesupport + multipart-post oauth (~> 0.5, >= 0.5.0) jquery-atwho-rails (1.3.2) jquery-rails (4.1.1) @@ -485,7 +483,8 @@ GEM method_source (0.8.2) mime-types (2.99.3) mimemagic (0.3.0) - mini_portile2 (2.2.0) + mini_mime (0.1.4) + mini_portile2 (2.3.0) minitest (5.7.0) mmap2 (2.2.7) mousetrap-rails (1.4.6) @@ -499,8 +498,8 @@ GEM net-ldap (0.16.0) net-ssh (4.1.0) netrc (0.11.0) - nokogiri (1.8.0) - mini_portile2 (~> 2.2.0) + nokogiri (1.8.1) + mini_portile2 (~> 2.3.0) numerizer (0.1.1) oauth (0.5.1) oauth2 (1.4.0) @@ -535,8 +534,8 @@ GEM omniauth-gitlab (1.0.2) omniauth (~> 1.0) omniauth-oauth2 (~> 1.0) - omniauth-google-oauth2 (0.4.1) - jwt (~> 1.5.2) + omniauth-google-oauth2 (0.5.2) + jwt (~> 1.5) multi_json (~> 1.3) omniauth (>= 1.1.1) omniauth-oauth2 (>= 1.3.1) @@ -569,7 +568,7 @@ GEM rubypants (~> 0.2) orm_adapter (0.5.0) os (0.9.6) - parallel (1.11.2) + parallel (1.12.0) paranoia (2.3.1) activerecord (>= 4.0, < 5.2) parser (2.4.0.0) @@ -690,7 +689,7 @@ GEM rake (12.0.0) rblineprof (0.3.6) debugger-ruby_core_source (~> 1.3) - rbnacl (3.4.0) + rbnacl (4.0.2) ffi rbnacl-libsodium (1.0.11) rbnacl (>= 3.0.1) @@ -730,7 +729,7 @@ GEM retriable (1.4.1) rinku (2.0.0) rotp (2.1.2) - rouge (2.1.0) + rouge (2.2.1) rqrcode (0.7.0) chunky_png rqrcode-rails3 (0.1.7) @@ -777,6 +776,8 @@ GEM rainbow (>= 1.99.1, < 3.0) ruby-progressbar (~> 1.7) unicode-display_width (~> 1.0, >= 1.0.1) + rubocop-gitlab-security (0.1.0) + rubocop (>= 0.47.1) rubocop-rspec (1.15.1) rubocop (>= 0.42.0) ruby-fogbugz (0.2.1) @@ -838,6 +839,7 @@ GEM faraday (~> 0.9) jwt (~> 1.5) multi_json (~> 1.10) + simple_po_parser (1.1.2) simplecov (0.14.1) docile (~> 1.1.0) json (>= 1.8, < 3) @@ -905,7 +907,6 @@ GEM uglifier (2.7.2) execjs (>= 0.3.0) json (>= 1.8.0) - underscore-rails (1.8.3) unf (0.1.4) unf_ext unf_ext (0.0.7.2) @@ -952,7 +953,7 @@ GEM expression_parser rinku xml-simple (1.1.5) - xpath (2.0.0) + xpath (2.1.0) nokogiri (~> 1.3) PLATFORMS @@ -965,7 +966,6 @@ DEPENDENCIES activerecord_sane_schema_dumper (= 0.2) acts-as-taggable-on (~> 4.0) addressable (~> 2.3.8) - after_commit_queue (~> 1.3.0) akismet (~> 2.0) allocations (~> 1.0) asana (~> 0.6.0) @@ -985,10 +985,10 @@ DEPENDENCIES browser (~> 2.2) bullet (~> 5.5.0) bundler-audit (~> 0.5.0) - capybara (~> 2.6.2) + capybara (~> 2.15.0) capybara-screenshot (~> 1.0.0) carrierwave (~> 1.1) - charlock_holmes (~> 0.7.3) + charlock_holmes (~> 0.7.5) chronic (~> 0.10.2) chronic_duration (~> 0.10.6) concurrent-ruby (~> 1.0.5) @@ -1027,19 +1027,20 @@ DEPENDENCIES gettext (~> 3.2.2) gettext_i18n_rails (~> 1.8.0) gettext_i18n_rails_js (~> 1.2.0) - gitaly (~> 0.26.0) + gitaly-proto (~> 0.33.0) github-linguist (~> 4.7.0) gitlab-flowdock-git-hook (~> 1.0.1) gitlab-markup (~> 1.5.1) - gitlab_omniauth-ldap (~> 2.0.3) + gitlab_omniauth-ldap (~> 2.0.4) gollum-lib (~> 4.2) gollum-rugged_adapter (~> 0.4.4) gon (~> 6.1.0) google-api-client (~> 0.8.6) gpgme - grape (~> 0.19.2) + grape (~> 1.0) grape-entity (~> 0.6.0) - grape-route-helpers (~> 2.0.0) + grape-route-helpers (~> 2.1.0) + grape_logging (~> 1.7) haml_lint (~> 0.26.0) hamlit (~> 2.6.1) hashie-forbidden_attributes @@ -1049,7 +1050,7 @@ DEPENDENCIES html2text httparty (~> 0.13.3) influxdb (~> 0.2) - jira-ruby (~> 1.1.2) + jira-ruby (~> 1.4) jquery-atwho-rails (~> 1.3.2) jquery-rails (~> 4.1.0) json-schema (~> 2.6.2) @@ -1069,7 +1070,7 @@ DEPENDENCIES mysql2 (~> 0.4.5) net-ldap net-ssh (~> 4.1.0) - nokogiri (~> 1.8.0) + nokogiri (~> 1.8.1) oauth2 (~> 1.4) octokit (~> 4.6.2) oj (~> 2.17.4) @@ -1081,7 +1082,7 @@ DEPENDENCIES omniauth-facebook (~> 4.0.0) omniauth-github (~> 1.1.1) omniauth-gitlab (~> 1.0.2) - omniauth-google-oauth2 (~> 0.4.1) + omniauth-google-oauth2 (~> 0.5.2) omniauth-kerberos (~> 0.3.0) omniauth-oauth2-generic (~> 0.2.2) omniauth-saml (~> 1.7.0) @@ -1115,7 +1116,7 @@ DEPENDENCIES rainbow (~> 2.2) raindrops (~> 0.18) rblineprof (~> 0.3.6) - rbnacl (~> 3.2) + rbnacl (~> 4.0) rbnacl-libsodium rdoc (~> 4.2) re2 (~> 1.1.1) @@ -1134,6 +1135,7 @@ DEPENDENCIES rspec-set (~> 0.1.3) rspec_profiling (~> 0.0.5) rubocop (~> 0.49.1) + rubocop-gitlab-security (~> 0.1.0) rubocop-rspec (~> 1.15.1) ruby-fogbugz (~> 0.2.1) ruby-prof (~> 0.16.2) @@ -1152,6 +1154,7 @@ DEPENDENCIES sidekiq (~> 5.0) sidekiq-cron (~> 0.6.0) sidekiq-limit_fetch (~> 3.4) + simple_po_parser (~> 1.1.2) simplecov (~> 0.14.0) slack-notifier (~> 1.5.1) spinach-rails (~> 0.2.1) @@ -1170,7 +1173,6 @@ DEPENDENCIES truncato (~> 0.7.9) u2f (~> 0.2.1) uglifier (~> 2.7.2) - underscore-rails (~> 1.8.0) unf (~> 0.1.4) unicorn (~> 5.1.0) unicorn-worker-killer (~> 0.4.4) @@ -1183,4 +1185,4 @@ DEPENDENCIES wikicloth (= 0.8.1) BUNDLED WITH - 1.15.3 + 1.15.4 diff --git a/pkgs/applications/version-management/gitlab/default.nix b/pkgs/applications/version-management/gitlab/default.nix index 9087ff6fdc02..93829b05dae9 100644 --- a/pkgs/applications/version-management/gitlab/default.nix +++ b/pkgs/applications/version-management/gitlab/default.nix @@ -18,11 +18,11 @@ let }; }; - version = "9.5.5"; + version = "10.0.2"; gitlabDeb = fetchurl { url = "https://packages.gitlab.com/gitlab/gitlab-ce/packages/debian/jessie/gitlab-ce_${version}-ce.0_amd64.deb/download"; - sha256 = "1wrwxksfqkha7qm2hbgs0z7lmgisdvdqa4wcll0qfzq1c3d286zz"; + sha256 = "0jsqjarvjzbxv1yiddzp5xwsqqrq5cvam0xn749p1vzqhcp8pahc"; }; in @@ -38,7 +38,7 @@ stdenv.mkDerivation rec { owner = "gitlabhq"; repo = "gitlabhq"; rev = "v${version}"; - sha256 = "0qi21lkq69ah977vssbkllb7q5jwb0vf2ws5s3bzpvp2mj3iab5m"; + sha256 = "1602d6nkb41gg80n6p0wqxrjsn79s0z3817461d8dw2ha2dmbl34"; }; patches = [ diff --git a/pkgs/applications/version-management/gitlab/gemset.nix b/pkgs/applications/version-management/gitlab/gemset.nix index fd27c6435974..34567ddb3ea4 100644 --- a/pkgs/applications/version-management/gitlab/gemset.nix +++ b/pkgs/applications/version-management/gitlab/gemset.nix @@ -122,15 +122,6 @@ }; version = "2.3.8"; }; - after_commit_queue = { - dependencies = ["activerecord"]; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1jrhvj4335dsrj0xndbf7a7m2inbwbx1knc0bwgvmkk1w47l43s0"; - type = "gem"; - }; - version = "1.3.0"; - }; akismet = { source = { remotes = ["https://rubygems.org"]; @@ -383,13 +374,13 @@ version = "9.0.6"; }; capybara = { - dependencies = ["addressable" "mime-types" "nokogiri" "rack" "rack-test" "xpath"]; + dependencies = ["addressable" "mini_mime" "nokogiri" "rack" "rack-test" "xpath"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ln77a5wwhd5sbxsh3v26xrwjnza0rgx2hn23yjggdlha03b00yw"; + sha256 = "0bahhwrd1rpfhci1x57yz0df9plziipljbw3p4k6mlash4wq6w92"; type = "gem"; }; - version = "2.6.2"; + version = "2.15.1"; }; capybara-screenshot = { dependencies = ["capybara" "launchy"]; @@ -420,10 +411,10 @@ charlock_holmes = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0jsl6k27wjmssxbwv9wpf7hgp9r0nvizcf6qpjnr7qs2nia53lf7"; + sha256 = "09dn56sx0kcw0k8ypiynhnhhiq7ff9m7b57l8wvnxj82wxsjb54y"; type = "gem"; }; - version = "0.7.3"; + version = "0.7.5"; }; chronic = { source = { @@ -859,10 +850,10 @@ ffi = { source = { remotes = ["https://rubygems.org"]; - sha256 = "1m5mprppw0xcrv2mkim5zsk70v089ajzqiq5hpyb0xg96fcyzyxj"; + sha256 = "034f52xf7zcqgbvwbl20jwdyjwznvqnwpbaps9nk18v9lgb1dpx0"; type = "gem"; }; - version = "1.9.10"; + version = "1.9.18"; }; flay = { dependencies = ["erubis" "path_expander" "ruby_parser" "sexp_processor"]; @@ -1076,14 +1067,14 @@ }; version = "0.3.2"; }; - gitaly = { + gitaly-proto = { dependencies = ["google-protobuf" "grpc"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1vm3kp2qrlkrdd1r386fg97av73y2k3xxw4xl9wfjdqqhisyi6hw"; + sha256 = "0f15idw1850kwi0na6x3xlk13ljwx3mpfnxfv58631cmb3ac7wf8"; type = "gem"; }; - version = "0.26.0"; + version = "0.33.0"; }; github-linguist = { dependencies = ["charlock_holmes" "escape_utils" "mime-types" "rugged"]; @@ -1132,10 +1123,10 @@ dependencies = ["net-ldap" "omniauth" "pyu-ruby-sasl" "rubyntlm"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1lx5ayb8m2avw6iy9fq0d847z78npg2aax4pbcbprwwmpbnvzz4b"; + sha256 = "1cpjadx852vw1gv5cm1qiqq6mclglzqajw7q572zncw4q3ji2fkv"; type = "gem"; }; - version = "2.0.3"; + version = "2.0.4"; }; globalid = { dependencies = ["activesupport"]; @@ -1194,10 +1185,10 @@ google-protobuf = { source = { remotes = ["https://rubygems.org"]; - sha256 = "1q0ka7x53b9vx4wdb2jdvwxxpb5i5ns7fhqb9zgbrp8yy1bg9m9p"; + sha256 = "1jh8axm5m75rvdf2i3s24pmi7p613armh9vk3p1d0ryfx159mqkl"; type = "gem"; }; - version = "3.3.0"; + version = "3.4.0.2"; }; googleauth = { dependencies = ["faraday" "jwt" "logging" "memoist" "multi_json" "os" "signet"]; @@ -1218,13 +1209,13 @@ version = "2.0.13"; }; grape = { - dependencies = ["activesupport" "builder" "hashie" "multi_json" "multi_xml" "mustermann-grape" "rack" "rack-accept" "virtus"]; + dependencies = ["activesupport" "builder" "mustermann-grape" "rack" "rack-accept" "virtus"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ida2agz4f6hfxc4nvmls15f9cl1xg2pra04d388x40r5dmjp04x"; + sha256 = "1vz5lx56z9hwx6ifyc7qpdwd020xb3ynv3vahvlcgm01qi7ykdhv"; type = "gem"; }; - version = "0.19.2"; + version = "1.0.0"; }; grape-entity = { dependencies = ["activesupport" "multi_json"]; @@ -1239,19 +1230,28 @@ dependencies = ["activesupport" "grape" "rake"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1qkaf2l56rxhacviqpzgqiwiv1fpbpxg5xgyp18x66mgxp9bpram"; + sha256 = "0ja4dlakk6r8p2cx113kymz9sbhdybjsiynnqpfs71lv0r6mmghj"; type = "gem"; }; - version = "2.0.0"; + version = "2.1.0"; + }; + grape_logging = { + dependencies = ["grape"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0lg2vhk0dlnyqs2rz8wilfm039q5mbsp5nvf51asir48a1rf9yza"; + type = "gem"; + }; + version = "1.7.0"; }; grpc = { dependencies = ["google-protobuf" "googleauth"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1siq5v4bmqlsb6122394dpk35fd2lxvjp4xnrabsb3vd90xqszcj"; + sha256 = "1zhci260088zlghpaz6ania1blz1dd7lgklsjnqk1vcymhpr6b38"; type = "gem"; }; - version = "1.4.0"; + version = "1.4.5"; }; haml = { dependencies = ["tilt"]; @@ -1291,10 +1291,10 @@ hashie = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0lfmbh98ng141m7yc8s4v56v49ppam416pzvd2d7pg85wmm44ljw"; + sha256 = "120mkd2hkwhcfj7avi1dphb0lm7wx364d1cjm9yr4fibqpvsgqi7"; type = "gem"; }; - version = "3.5.5"; + version = "3.5.6"; }; hashie-forbidden_attributes = { dependencies = ["hashie"]; @@ -1434,13 +1434,13 @@ version = "0.8.3"; }; jira-ruby = { - dependencies = ["activesupport" "oauth"]; + dependencies = ["activesupport" "multipart-post" "oauth"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "03n76a8m2d352q29j3yna1f9g3xg9dc9p3fvvx77w67h19ks7zrf"; + sha256 = "14019mliqwcppj6qp2wdhh5gbvs2yh2idibag13m9a18ag965bhw"; type = "gem"; }; - version = "1.1.2"; + version = "1.4.1"; }; jquery-atwho-rails = { source = { @@ -1700,13 +1700,21 @@ }; version = "0.3.0"; }; + mini_mime = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0kzf2zx1arhjhw9c6mns0jqbmzdkd1vw25v940lvw63fzkbfv6dg"; + type = "gem"; + }; + version = "0.1.4"; + }; mini_portile2 = { source = { remotes = ["https://rubygems.org"]; - sha256 = "0g5bpgy08q0nc0anisg3yvwc1gc3inl854fcrg48wvg7glqd6dpm"; + sha256 = "13d32jjadpjj6d2wdhkfpsmy68zjx90p49bgf8f7nkpz86r1fr11"; type = "gem"; }; - version = "2.2.0"; + version = "2.3.0"; }; minitest = { source = { @@ -1809,10 +1817,10 @@ dependencies = ["mini_portile2"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1nffsyx1xjg6v5n9rrbi8y1arrcx2i5f21cp6clgh9iwiqkr7rnn"; + sha256 = "105xh2zkr8nsyfaj2izaisarpnkrrl9000y3nyflg9cbzrfxv021"; type = "gem"; }; - version = "1.8.0"; + version = "1.8.1"; }; numerizer = { source = { @@ -1932,10 +1940,10 @@ dependencies = ["jwt" "multi_json" "omniauth" "omniauth-oauth2"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "1m6v2vm3h21ychd10wzkdhyhnrk9zhc1bgi4ahp5gwy00pggrppw"; + sha256 = "1sri7pn9pm7nr93zj7j1g4gqd3rpibqw7v09s1c6fihh5cmjz3fz"; type = "gem"; }; - version = "0.4.1"; + version = "0.5.2"; }; omniauth-kerberos = { dependencies = ["omniauth-multipassword" "timfel-krb5-auth"]; @@ -2046,10 +2054,10 @@ parallel = { source = { remotes = ["https://rubygems.org"]; - sha256 = "1yxhk64sfkm84v509m3mzmp0b7ra9lc7s8k6113yk9faih3g7w7v"; + sha256 = "0qv2yj4sxr36ga6xdxvbq9h05hn10bwcbkqv6j6q1fiixhsdnnzd"; type = "gem"; }; - version = "1.11.2"; + version = "1.12.0"; }; paranoia = { dependencies = ["activerecord"]; @@ -2441,10 +2449,10 @@ dependencies = ["ffi"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "06xb4khgjblrmp1xgkjbmca0wl97i0nazf9pgx69vwr1ac03j920"; + sha256 = "08dkigw8wdx53hviw1zqrs7rcrzqcwh9jd3dvwr72013z9fmyp48"; type = "gem"; }; - version = "3.4.0"; + version = "4.0.2"; }; rbnacl-libsodium = { dependencies = ["rbnacl"]; @@ -2620,10 +2628,10 @@ rouge = { source = { remotes = ["https://rubygems.org"]; - sha256 = "1932gvvzfdky2z01sjri354ak7wq3nk9jmh7fiydfgjchfwk7sr4"; + sha256 = "02kpahk5nkc33yxnn75649kzxaz073wvazr2zyg491nndykgnvcs"; type = "gem"; }; - version = "2.1.0"; + version = "2.2.1"; }; rqrcode = { dependencies = ["chunky_png"]; @@ -2740,6 +2748,15 @@ }; version = "0.49.1"; }; + rubocop-gitlab-security = { + dependencies = ["rubocop"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0aw9qmyc6xj6fi0jxp8m4apk358rd91z492ragn6jp4rghkqj5cy"; + type = "gem"; + }; + version = "0.1.0"; + }; rubocop-rspec = { dependencies = ["rubocop"]; source = { @@ -2990,6 +3007,14 @@ }; version = "0.7.3"; }; + simple_po_parser = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "08wkp4gcrd89k5yari9j94if9ffkj3rka4llcwrhdgsi3l15p5f3"; + type = "gem"; + }; + version = "1.1.2"; + }; simplecov = { dependencies = ["docile" "json" "simplecov-html"]; source = { @@ -3280,14 +3305,6 @@ }; version = "2.7.2"; }; - underscore-rails = { - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0iyspb7s49wpi9cc314gvlkyn45iyfivzxhdw0kql1zrgllhlzfk"; - type = "gem"; - }; - version = "1.8.3"; - }; unf = { dependencies = ["unf_ext"]; source = { @@ -3455,9 +3472,9 @@ dependencies = ["nokogiri"]; source = { remotes = ["https://rubygems.org"]; - sha256 = "04kcr127l34p7221z13blyl0dvh0bmxwx326j72idayri36a394w"; + sha256 = "1ha626m6fh50fpilb9pdnmq9xl586w7c0zyidg895c3iq13rqgyw"; type = "gem"; }; - version = "2.0.0"; + version = "2.1.0"; }; } \ No newline at end of file diff --git a/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch b/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch index 0c56140b9f07..c88f525715e0 100644 --- a/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch +++ b/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch @@ -62,22 +62,16 @@ diff --git a/lib/gitlab/logger.rb b/lib/gitlab/logger.rb index 59b21149a9..4f4a39a06c 100644 --- a/lib/gitlab/logger.rb +++ b/lib/gitlab/logger.rb -@@ -13,20 +13,20 @@ module Gitlab +@@ -13,7 +13,7 @@ end def self.read_latest - path = Rails.root.join("log", file_name) + path = File.join(ENV["GITLAB_LOG_PATH"], file_name) - self.build unless File.exist?(path) - tail_output, _ = Gitlab::Popen.popen(%W(tail -n 2000 #{path})) - tail_output.split("\n") - end - def self.read_latest_for(filename) -- path = Rails.root.join("log", filename) -+ path = File.join(ENV["GITLAB_LOG_PATH"], filename) - tail_output, _ = Gitlab::Popen.popen(%W(tail -n 2000 #{path})) - tail_output.split("\n") + return [] unless File.readable?(path) + +@@ -22,7 +22,7 @@ end def self.build @@ -158,3 +152,14 @@ index b276a81eac..070e3ebd81 100644 end end end +--- a/lib/api/api.rb 1970-01-01 01:00:01.000000000 +0100 ++++ b/lib/api/api.rb 2017-09-28 19:37:24.953605705 +0200 +@@ -2,7 +2,7 @@ + class API < Grape::API + include APIGuard + +- LOG_FILENAME = Rails.root.join("log", "api_json.log") ++ LOG_FILENAME = File.join(ENV["GITLAB_LOG_PATH"], "api_json.log") + + use GrapeLogging::Middleware::RequestLogger, + logger: Logger.new(LOG_FILENAME), diff --git a/pkgs/applications/version-management/gogs/default.nix b/pkgs/applications/version-management/gogs/default.nix index 49243a823ede..1522f348ca1a 100644 --- a/pkgs/applications/version-management/gogs/default.nix +++ b/pkgs/applications/version-management/gogs/default.nix @@ -7,18 +7,21 @@ with stdenv.lib; buildGoPackage rec { name = "gogs-${version}"; - version = "0.11.19"; + version = "0.11.29"; src = fetchFromGitHub { owner = "gogits"; repo = "gogs"; rev = "v${version}"; - sha256 = "0smzklhpfv3smqgzd0cnjdif3zi5q7b02grrnb5zssmdi1b2dlsd"; + sha256 = "1xn1b4dxf7r8kagps3yvp31zskfxn50k1gfic9abl4kjwpwk78c0"; }; - patchPhase = '' + patches = [ ./static-root-path.patch ]; + + postPatch = '' patchShebangs . - ''; + substituteInPlace pkg/setting/setting.go --subst-var data + ''; nativeBuildInputs = [ makeWrapper ]; @@ -33,10 +36,7 @@ buildGoPackage rec { cp -R $src/{public,templates} $data wrapProgram $bin/bin/gogs \ - --prefix PATH : ${makeBinPath [ bash git gzip openssh ]} \ - --run 'export GOGS_WORK_DIR=''${GOGS_WORK_DIR:-$PWD}' \ - --run 'mkdir -p "$GOGS_WORK_DIR" && cd "$GOGS_WORK_DIR"' \ - --run "ln -fs $data/{public,templates} ." + --prefix PATH : ${makeBinPath [ bash git gzip openssh ]} ''; goPackagePath = "github.com/gogits/gogs"; diff --git a/pkgs/applications/version-management/gogs/static-root-path.patch b/pkgs/applications/version-management/gogs/static-root-path.patch new file mode 100644 index 000000000000..9eaa72a0c85d --- /dev/null +++ b/pkgs/applications/version-management/gogs/static-root-path.patch @@ -0,0 +1,13 @@ +diff --git a/pkg/setting/setting.go b/pkg/setting/setting.go +index f206592d..796da6ef 100644 +--- a/pkg/setting/setting.go ++++ b/pkg/setting/setting.go +@@ -474,7 +474,7 @@ func NewContext() { + LocalURL = sec.Key("LOCAL_ROOT_URL").MustString(string(Protocol) + "://localhost:" + HTTPPort + "/") + OfflineMode = sec.Key("OFFLINE_MODE").MustBool() + DisableRouterLog = sec.Key("DISABLE_ROUTER_LOG").MustBool() +- StaticRootPath = sec.Key("STATIC_ROOT_PATH").MustString(workDir) ++ StaticRootPath = sec.Key("STATIC_ROOT_PATH").MustString("@data@") + AppDataPath = sec.Key("APP_DATA_PATH").MustString("data") + EnableGzip = sec.Key("ENABLE_GZIP").MustBool() + diff --git a/pkgs/applications/video/gpac/default.nix b/pkgs/applications/video/gpac/default.nix index 927842916a15..7a8b66d2d28e 100644 --- a/pkgs/applications/video/gpac/default.nix +++ b/pkgs/applications/video/gpac/default.nix @@ -1,19 +1,25 @@ -{ stdenv, fetchsvn, pkgconfig, zlib }: +{ stdenv, fetchFromGitHub, pkgconfig, zlib }: stdenv.mkDerivation rec { - name = "gpac-0.5.0-svn"; + version = "0.7.1"; + name = "gpac-${version}"; - src = fetchsvn { - url = "http://svn.code.sf.net/p/gpac/code/trunk/gpac"; - rev = "4749"; - sha256 = "0y38pmp64a2l70y1yby90qzxfzx8y7r0cdmgjxzw86jh6si5ndhp"; + src = fetchFromGitHub { + owner = "gpac"; + repo = "gpac"; + rev = "v${version}"; + sha256 = "197c5968p5bzvk0ga347fwgkqh4j1v3z65wlx65c5m9gwfxz2k2q"; }; # this is the bare minimum configuration, as I'm only interested in MP4Box # For most other functionality, this should probably be extended - nativeBuildInputs = [ pkgconfig zlib ]; + nativeBuildInputs = [ pkgconfig ]; - meta = { + buildInputs = [ zlib ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { description = "Open Source multimedia framework for research and academic purposes"; longDescription = '' GPAC is an Open Source multimedia framework for research and academic purposes. @@ -27,10 +33,9 @@ stdenv.mkDerivation rec { A multimedia packager, called MP4Box, And some server tools included in MP4Box and MP42TS applications. ''; - homepage = http://gpac.wp.mines-telecom.fr; - license = stdenv.lib.licenses.lgpl21; - - maintainers = [ stdenv.lib.maintainers.bluescreen303 ]; - platforms = stdenv.lib.platforms.linux; + homepage = https://gpac.wp.imt.fr; + license = licenses.lgpl21; + maintainers = with maintainers; [ bluescreen303 mgdelacroix ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/video/natron/default.nix b/pkgs/applications/video/natron/default.nix index 75dccbafd3f4..550cd2930cd2 100644 --- a/pkgs/applications/video/natron/default.nix +++ b/pkgs/applications/video/natron/default.nix @@ -122,5 +122,6 @@ stdenv.mkDerivation { license = stdenv.lib.licenses.gpl2; maintainers = [ maintainers.puffnfresh ]; platforms = platforms.linux; + broken = true; }; } diff --git a/pkgs/applications/video/shotcut/default.nix b/pkgs/applications/video/shotcut/default.nix index 72dbf87fdefe..2fd0d57b4e2a 100644 --- a/pkgs/applications/video/shotcut/default.nix +++ b/pkgs/applications/video/shotcut/default.nix @@ -1,26 +1,29 @@ -{ stdenv, fetchurl, SDL, frei0r, gettext, mlt, jack1, pkgconfig, qtbase, -qtmultimedia, qtwebkit, qtx11extras, qtwebsockets, qtquickcontrols, -qtgraphicaleffects, -qmake, makeWrapper }: +{ stdenv, fetchFromGitHub, SDL2, frei0r, gettext, mlt, jack1, pkgconfig, qtbase +, qtmultimedia, qtwebkit, qtx11extras, qtwebsockets, qtquickcontrols +, qtgraphicaleffects, libmlt +, qmake, makeWrapper }: stdenv.mkDerivation rec { name = "shotcut-${version}"; - version = "17.02"; + version = "17.09"; - src = fetchurl { - url = "https://github.com/mltframework/shotcut/archive/v${version}.tar.gz"; - sha256 = "09nygz1x9fvqf33gqpc6jnr1j7ny0yny3w2ngwqqfkf3f8n83qhr"; + src = fetchFromGitHub { + owner = "mltframework"; + repo = "shotcut"; + rev = "v${version}"; + sha256 = "061jmk1g2h7p82kyk2zgk19g0y3dgx3lppfnm6cdmi550b51qllb"; }; - enableParallelBuilding = true; nativeBuildInputs = [ makeWrapper pkgconfig qmake ]; buildInputs = [ - SDL frei0r gettext mlt + SDL2 frei0r gettext mlt libmlt qtbase qtmultimedia qtwebkit qtx11extras qtwebsockets qtquickcontrols qtgraphicaleffects ]; + NIX_CFLAGS_COMPILE = "-I${libmlt}/include/mlt++ -I${libmlt}/include/mlt"; + prePatch = '' sed 's_shotcutPath, "qmelt"_"${mlt}/bin/melt"_' -i src/jobs/meltjob.cpp sed 's_shotcutPath, "ffmpeg"_"${mlt.ffmpeg}/bin/ffmpeg"_' -i src/jobs/ffmpegjob.cpp @@ -31,7 +34,7 @@ stdenv.mkDerivation rec { postInstall = '' mkdir -p $out/share/shotcut cp -r src/qml $out/share/shotcut/ - wrapProgram $out/bin/shotcut --prefix FREI0R_PATH : ${frei0r}/lib/frei0r-1 --prefix LD_LIBRARY_PATH : ${stdenv.lib.makeLibraryPath [ jack1 SDL ]} --prefix PATH : ${mlt}/bin + wrapProgram $out/bin/shotcut --prefix FREI0R_PATH : ${frei0r}/lib/frei0r-1 --prefix LD_LIBRARY_PATH : ${stdenv.lib.makeLibraryPath [ jack1 SDL2 ]} --prefix PATH : ${mlt}/bin ''; meta = with stdenv.lib; { @@ -49,9 +52,5 @@ stdenv.mkDerivation rec { license = licenses.gpl3; maintainers = [ maintainers.goibhniu ]; platforms = platforms.linux; - - # after qt5 bump it probably needs to be updated, - # but newer versions seem to need newer than the latest stable mlt - # broken = true; }; } diff --git a/pkgs/applications/video/vlc/default.nix b/pkgs/applications/video/vlc/default.nix index b806ff65ddb2..b465379c50ed 100644 --- a/pkgs/applications/video/vlc/default.nix +++ b/pkgs/applications/video/vlc/default.nix @@ -11,6 +11,7 @@ , qt4 ? null , withQt5 ? false, qtbase ? null, qtx11extras ? null , jackSupport ? false +, fetchpatch }: with stdenv.lib; @@ -27,6 +28,14 @@ stdenv.mkDerivation rec { sha256 = "1a22b913p2227ljz89c4fgjlyln5gcz8z58w32r0wh4srnnd60y4"; }; + patches = [ + (fetchpatch { + name = "CVE-2017-9300.patch"; + url = "https://git.videolan.org/?p=vlc/vlc-2.2.git;a=patch;h=55a82442cfea9dab8b853f3a4610f2880c5fadf3;hp=dbe888f9ca9c3b102478b4a16a3d1d985c267899"; + sha256 = "0l0fwqkn31lggwc5dkhb58gkv8pc6ng51y0izjigqvfqvhwdnzxn"; + }) + ]; + # Comment-out the Qt 5.5 version check, as we do apply the relevant patch. # https://trac.videolan.org/vlc/ticket/16497 postPatch = if (!withQt5) then null else diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix index 043f27e13d24..270a9be6eec9 100644 --- a/pkgs/applications/virtualization/docker/default.nix +++ b/pkgs/applications/virtualization/docker/default.nix @@ -44,6 +44,12 @@ rec { rev = containerdRev; sha256 = containerdSha256; }; + + # This should go into the containerd derivation once 1.0.0 is out + preBuild = (optionalString (version == "17.09.0-ce") '' + mkdir $(pwd)/vendor/src + mv $(pwd)/vendor/{github.com,golang.org,google.golang.org} $(pwd)/vendor/src/ + '') + oldAttrs.preBuild; }); docker-tini = tini.overrideAttrs (oldAttrs: rec { name = "docker-init"; @@ -188,14 +194,14 @@ rec { tiniSha256 = "0zj4kdis1vvc6dwn4gplqna0bs7v6d1y2zc8v80s3zi018inhznw"; }; - docker_17_07 = dockerGen rec { - version = "17.07.0-ce"; - rev = "87847530f7176a48348d196f7c23bbd058052af1"; # git commit - sha256 = "0zw9zlzbd7il33ch17ypwpa73gsb930sf2njnphg7ylvnqp8qzsp"; - runcRev = "2d41c047c83e09a6d61d464906feb2a2f3c52aa4"; - runcSha256 = "0v5iv29ck6lkxvxh7a56gfrlgfs0bjvjhrq3p6qqv9qjzv825byq"; - containerdRev = "3addd840653146c90a254301d6c3a663c7fd6429"; - containerdSha256 = "0as4s5wd57pdh1cyavkccpgs46kvlhr41v07qrv0phzffdhq3d5j"; + docker_17_09 = dockerGen rec { + version = "17.09.0-ce"; + rev = "afdb6d44a80f777069885a9ee0e0f86cf841b1bb"; # git commit + sha256 = "03g0imdcxqx9y4hhyymxqzvm8bqg4cqrmb7sjbxfdgrhzh9kcn1p"; + runcRev = "3f2f8b84a77f73d38244dd690525642a72156c64"; + runcSha256 = "0vaagmav8443kmyxac2y1y5l2ipcs1c7gdmsnvj48y9bafqx72rq"; + containerdRev = "06b9cb35161009dcb7123345749fef02f7cea8e0"; + containerdSha256 = "10hms8a2nn69nfnwly6923jzx40c3slpsdhjhff4bxh36flpf9gd"; tiniRev = "949e6facb77383876aeff8a6944dde66b3089574"; tiniSha256 = "0zj4kdis1vvc6dwn4gplqna0bs7v6d1y2zc8v80s3zi018inhznw"; }; diff --git a/pkgs/applications/virtualization/qemu/default.nix b/pkgs/applications/virtualization/qemu/default.nix index 5da9db918557..7b78db64fe66 100644 --- a/pkgs/applications/virtualization/qemu/default.nix +++ b/pkgs/applications/virtualization/qemu/default.nix @@ -18,7 +18,7 @@ with stdenv.lib; let - version = "2.9.0"; + version = "2.9.1"; audio = optionalString (hasSuffix "linux" stdenv.system) "alsa," + optionalString pulseSupport "pa," + optionalString sdlSupport "sdl,"; @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://wiki.qemu.org/download/qemu-${version}.tar.bz2"; - sha256 = "053c7ivp3li7cdagzkp2wdc5myybzjf826r6qfkcf0xvn4bv5gq0"; + sha256 = "1340hh4jvhvi97yqck408wi8aagnhzq1311ih0fq9bp4ddlk03sd"; }; buildInputs = diff --git a/pkgs/applications/virtualization/virt-what/default.nix b/pkgs/applications/virtualization/virt-what/default.nix new file mode 100644 index 000000000000..0236a34bb124 --- /dev/null +++ b/pkgs/applications/virtualization/virt-what/default.nix @@ -0,0 +1,19 @@ +{ stdenv, lib, fetchurl }: + +stdenv.mkDerivation rec { + name = "virt-what-${version}"; + version = "1.18"; + + src = fetchurl { + url = "https://people.redhat.com/~rjones/virt-what/files/${name}.tar.gz"; + sha256 = "1x32h7i6lh823wj97r5rr2hg1v215kqzly14dwg0mwx62j1dshmw"; + }; + + meta = with lib; { + description = "Detect if running in a virtual machine and prints its type"; + homepage = "https://people.redhat.com/~rjones/virt-what/"; + maintainers = with maintainers; [ fpletz ]; + license = licenses.gpl2Plus; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/window-managers/i3/default.nix b/pkgs/applications/window-managers/i3/default.nix index 54dfc08e3b59..19aa89a7f7e7 100644 --- a/pkgs/applications/window-managers/i3/default.nix +++ b/pkgs/applications/window-managers/i3/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { name = "i3-${version}"; - version = "4.14"; + version = "4.14.1"; src = fetchurl { url = "http://i3wm.org/downloads/${name}.tar.bz2"; - sha256 = "1mm5jazwv4dz3k8vl1lfrcw86agpws5k9lmav1ly51qvmzivsfmf"; + sha256 = "1cazmfbbx6n8c81h6x6pdayq3mxs2ml3adz165z8vapkc72kl1nh"; }; nativeBuildInputs = [ which pkgconfig makeWrapper ]; diff --git a/pkgs/applications/window-managers/i3/gaps.nix b/pkgs/applications/window-managers/i3/gaps.nix index 58ab5b1d676b..b322c7da193a 100644 --- a/pkgs/applications/window-managers/i3/gaps.nix +++ b/pkgs/applications/window-managers/i3/gaps.nix @@ -3,12 +3,12 @@ i3.overrideDerivation (super : rec { name = "i3-gaps-${version}"; - version = "4.14"; - releaseDate = "2017-09-04"; + version = "4.14.1"; + releaseDate = "2017-09-24"; src = fetchurl { url = "https://github.com/Airblader/i3/archive/${version}.tar.gz"; - sha256 = "08y2m0afcm8mbzb92qz286fd1hnqfya2pvhpxbgv83sgjcsg6hlr"; + sha256 = "11fnkg4halplcnannfw3ishzwwbxbnjafmkxsim199jhlyjjd8j7"; }; nativeBuildInputs = super.nativeBuildInputs ++ [ autoreconfHook ]; diff --git a/pkgs/applications/window-managers/jwm/default.nix b/pkgs/applications/window-managers/jwm/default.nix index 83c4e6828e1d..fbea1d4e9a41 100644 --- a/pkgs/applications/window-managers/jwm/default.nix +++ b/pkgs/applications/window-managers/jwm/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "jwm-${version}"; - version = "1621"; + version = "1651"; src = fetchFromGitHub { owner = "joewing"; repo = "jwm"; rev = "s${version}"; - sha256 = "1cxi9yd3wwzhh06f6myk15cav7ayvzxdaxhvqb3570nwj21zlnsm"; + sha256 = "097wqipg1h7h19a5bqdx7iq60fkjrx2niwsgg1f8cfz106yhbp6q"; }; nativeBuildInputs = [ pkgconfig automake autoconf libtool gettext which ]; diff --git a/pkgs/applications/window-managers/sway/default.nix b/pkgs/applications/window-managers/sway/default.nix index ac725733d647..2c94f7f6fecc 100644 --- a/pkgs/applications/window-managers/sway/default.nix +++ b/pkgs/applications/window-managers/sway/default.nix @@ -1,45 +1,52 @@ -{ stdenv, fetchFromGitHub, pango, libinput -, makeWrapper, cmake, pkgconfig, asciidoc, libxslt, docbook_xsl, cairo -, wayland, wlc, libxkbcommon, pixman, fontconfig, pcre, json_c, dbus_libs, libcap -, xwayland, pam, gdk_pixbuf +{ stdenv, fetchFromGitHub +, makeWrapper, cmake, pkgconfig, asciidoc, libxslt, docbook_xsl +, wayland, wlc, libxkbcommon, pixman, fontconfig, pcre, json_c, dbus_libs +, pango, cairo, libinput, libcap, xwayland, pam, gdk_pixbuf, libpthreadstubs +, libXdmcp }: let + # TODO: Sway 0.14.0 with wlc 0.0.10 segfaults version = "0.13.0"; -in - stdenv.mkDerivation rec { - name = "sway-${version}"; - - src = fetchFromGitHub { - owner = "Sircmpwn"; - repo = "sway"; - rev = "${version}"; - sha256 = "1vgk4rl51nx66yzpwg4yhnbj7wc30k5q0hh5lf8y0i1nvpal0p3q"; - }; - - nativeBuildInputs = [ makeWrapper cmake pkgconfig asciidoc libxslt docbook_xsl ]; - - buildInputs = [ wayland wlc libxkbcommon pixman fontconfig pcre json_c dbus_libs pango cairo libinput libcap xwayland pam gdk_pixbuf ]; - - patchPhase = '' - sed -i s@/etc/sway@$out/etc/sway@g CMakeLists.txt; - ''; - - makeFlags = "PREFIX=$(out)"; - cmakeFlags = "-DVERSION=${version}"; - installPhase = "PREFIX=$out make install"; - - LD_LIBRARY_PATH = stdenv.lib.makeLibraryPath [ wlc dbus_libs ]; - preFixup = '' - wrapProgram $out/bin/sway \ - --prefix LD_LIBRARY_PATH : "${LD_LIBRARY_PATH}"; - ''; - - meta = with stdenv.lib; { - description = "i3-compatible window manager for Wayland"; - homepage = "http://swaywm.org"; - license = licenses.mit; - platforms = platforms.linux; - maintainers = with maintainers; [ ]; - }; - } +in stdenv.mkDerivation rec { + name = "sway-${version}"; + + src = fetchFromGitHub { + owner = "Sircmpwn"; + repo = "sway"; + rev = "${version}"; + sha256 = "1vgk4rl51nx66yzpwg4yhnbj7wc30k5q0hh5lf8y0i1nvpal0p3q"; + }; + + nativeBuildInputs = [ + makeWrapper cmake pkgconfig + asciidoc libxslt docbook_xsl + ]; + buildInputs = [ + wayland wlc libxkbcommon pixman fontconfig pcre json_c dbus_libs + pango cairo libinput libcap xwayland pam gdk_pixbuf libpthreadstubs + libXdmcp + ]; + + patchPhase = '' + sed -i s@/etc/sway@$out/etc/sway@g CMakeLists.txt; + ''; + + makeFlags = "PREFIX=$(out)"; + cmakeFlags = "-DVERSION=${version}"; + installPhase = "PREFIX=$out make install"; + + LD_LIBRARY_PATH = stdenv.lib.makeLibraryPath [ wlc dbus_libs ]; + preFixup = '' + wrapProgram $out/bin/sway \ + --prefix LD_LIBRARY_PATH : "${LD_LIBRARY_PATH}"; + ''; + + meta = with stdenv.lib; { + description = "i3-compatible window manager for Wayland"; + homepage = http://swaywm.org; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ primeos ]; # Trying to keep it up-to-date. + }; +} diff --git a/pkgs/applications/window-managers/windowmaker/dockapps/wmsm.app.nix b/pkgs/applications/window-managers/windowmaker/dockapps/wmsm.app.nix index e211abe0ea54..cf9a19c12d23 100644 --- a/pkgs/applications/window-managers/windowmaker/dockapps/wmsm.app.nix +++ b/pkgs/applications/window-managers/windowmaker/dockapps/wmsm.app.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation { postUnpack = "sourceRoot=\${sourceRoot}/wmsm"; + NIX_CFLAGS_COMPILE = "-std=gnu89"; + installPhase = '' substituteInPlace Makefile --replace "PREFIX = /usr/X11R6/bin" "" --replace "/usr/bin/install" "install" mkdir -pv $out/bin; diff --git a/pkgs/applications/window-managers/wtftw/default.nix b/pkgs/applications/window-managers/wtftw/default.nix index 0ff3367e3aee..7e7c4c665890 100644 --- a/pkgs/applications/window-managers/wtftw/default.nix +++ b/pkgs/applications/window-managers/wtftw/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchFromGitHub, rustPlatform, cargo, libXinerama, libX11, xlibs, pkgconfig }: rustPlatform.buildRustPackage rec { - name = "wtftw-0.0pre20161001"; + name = "wtftw-0.0pre20170921"; src = fetchFromGitHub { owner = "kintaro"; repo = "wtftw"; - rev = "b72a1bd24430a614d953d6ecf61732805277cc0c"; - sha256 = "1ajxkncqh4azyhmsdyk07r1kbhwv81vl1ix3w4iaz8cyln4gs0kp"; + rev = "13712d4c051938520b90b6639d4ff813f6fe5f48"; + sha256 = "1r74nhcwiy2rmifzjhdal3jcqz4jz48nfvhdyw4gasa6nxp3msdl"; }; depsSha256 = "0z7h8ybh2db3xl8qxbzby5lncdaijixzmbn1j8a45lbky1xiix71"; @@ -24,7 +24,7 @@ rustPlatform.buildRustPackage rec { cp -p target/release/wtftw $out/bin/ echo "[Desktop Entry] Name=wtftw - Exec=/bin/wtftw + Exec=$out/bin/wtftw Type=XSession DesktopName=wtftw" > $out/share/xsessions/wtftw.desktop ''; diff --git a/pkgs/build-support/docker/default.nix b/pkgs/build-support/docker/default.nix index 843d6d6b5ddb..68b803f6e3cc 100644 --- a/pkgs/build-support/docker/default.nix +++ b/pkgs/build-support/docker/default.nix @@ -32,20 +32,7 @@ rec { inherit pkgs buildImage pullImage shadowSetup buildImageWithNixDb; }; - pullImage = - let - nameReplace = name: builtins.replaceStrings ["/" ":"] ["-" "-"] name; - in - # For simplicity we only support sha256. - { imageName, imageTag ? "latest", imageId ? "${imageName}:${imageTag}" - , sha256, name ? (nameReplace "docker-image-${imageName}-${imageTag}.tar") }: - runCommand name { - impureEnvVars=pkgs.stdenv.lib.fetchers.proxyImpureEnvVars; - outputHashMode="flat"; - outputHashAlgo="sha256"; - outputHash=sha256; - } - "${pkgs.skopeo}/bin/skopeo copy docker://${imageId} docker-archive://$out:${imageId}"; + pullImage = callPackage ./pull.nix {}; # We need to sum layer.tar, not a directory, hence tarsum instead of nix-hash. # And we cannot untar it, because then we cannot preserve permissions ecc. @@ -137,7 +124,7 @@ rec { }; inherit fromImage fromImageName fromImageTag; - buildInputs = [ utillinux e2fsprogs jshon rsync jq ]; + buildInputs = [ utillinux e2fsprogs jshon rsync ]; } '' rm -rf $out @@ -146,29 +133,44 @@ rec { mount /dev/${vmTools.hd} disk cd disk - layers="" if [[ -n "$fromImage" ]]; then echo "Unpacking base image..." mkdir image tar -C image -xpf "$fromImage" - layers=$(jq -r '.[0].Layers | join(" ")' image/manifest.json) + + # If the image name isn't set, read it from the image repository json. + if [[ -z "$fromImageName" ]]; then + fromImageName=$(jshon -k < image/repositories | head -n 1) + echo "From-image name wasn't set. Read $fromImageName." + fi + + # If the tag isn't set, use the name as an index into the json + # and read the first key found. + if [[ -z "$fromImageTag" ]]; then + fromImageTag=$(jshon -e $fromImageName -k < image/repositories \ + | head -n1) + echo "From-image tag wasn't set. Read $fromImageTag." + fi + + # Use the name and tag to get the parent ID field. + parentID=$(jshon -e $fromImageName -e $fromImageTag -u \ + < image/repositories) fi - # Unpack all of the layers into the image. - # Layer list is ordered starting from the base image + # Unpack all of the parent layers into the image. lowerdir="" - for layer in $layers; do - echo "Unpacking layer $layer" - layerDir=image/$(echo $layer | cut -d':' -f2)"_unpacked" - mkdir -p $layerDir - tar -C $layerDir -xpf image/$layer - chmod a+w image/$layer - rm image/$layer + while [[ -n "$parentID" ]]; do + echo "Unpacking layer $parentID" + mkdir -p image/$parentID/layer + tar -C image/$parentID/layer -xpf image/$parentID/layer.tar + rm image/$parentID/layer.tar - find $layerDir -name ".wh.*" -exec bash -c 'name="$(basename {}|sed "s/^.wh.//")"; mknod "$(dirname {})/$name" c 0 0; rm {}' \; + find image/$parentID/layer -name ".wh.*" -exec bash -c 'name="$(basename {}|sed "s/^.wh.//")"; mknod "$(dirname {})/$name" c 0 0; rm {}' \; # Get the next lower directory and continue the loop. - lowerdir=$lowerdir''${lowerdir:+:}$layerDir + lowerdir=$lowerdir''${lowerdir:+:}image/$parentID/layer + parentID=$(cat image/$parentID/json \ + | (jshon -e parent -u 2>/dev/null || true)) done mkdir work @@ -446,17 +448,26 @@ rec { mkdir image touch baseFiles - layers="" if [[ -n "$fromImage" ]]; then echo "Unpacking base image..." tar -C image -xpf "$fromImage" - config=$(jq -r '.[0].Config' image/manifest.json) - layers=$(jq -r '.[0].Layers | join(" ")' image/manifest.json) - for l in $layers; do - ls_tar image/$l >> baseFiles + # Do not import the base image configuration and manifest + chmod a+w image image/*.json + rm -f image/*.json + + if [[ -z "$fromImageName" ]]; then + fromImageName=$(jshon -k < image/repositories|head -n1) + fi + if [[ -z "$fromImageTag" ]]; then + fromImageTag=$(jshon -e $fromImageName -k \ + < image/repositories|head -n1) + fi + parentID=$(jshon -e $fromImageName -e $fromImageTag -u \ + < image/repositories) + + for l in image/*/layer.tar; do + ls_tar $l >> baseFiles done - chmod u+w image image/$config - rm image/$config fi chmod -R ug+rw image @@ -483,28 +494,47 @@ rec { tar -rpf temp/layer.tar --mtime="@$SOURCE_DATE_EPOCH" \ --owner=0 --group=0 --no-recursion --files-from newFiles - gzip temp/layer.tar - layerID="sha256:$(sha256sum temp/layer.tar.gz | cut -d ' ' -f 1)" - mv temp/layer.tar.gz image/$layerID + echo "Adding meta..." - echo "Generating image configuration and manifest..." + # If we have a parentID, add it to the json metadata. + if [[ -n "$parentID" ]]; then + cat temp/json | jshon -s "$parentID" -i parent > tmpjson + mv tmpjson temp/json + fi + + # Take the sha256 sum of the generated json and use it as the layer ID. + # Compute the size and add it to the json under the 'Size' field. + layerID=$(sha256sum temp/json|cut -d ' ' -f 1) + size=$(stat --printf="%s" temp/layer.tar) + cat temp/json | jshon -s "$layerID" -i id -n $size -i Size > tmpjson + mv tmpjson temp/json + + # Use the temp folder we've been working on to create a new image. + mv temp image/$layerID + + # Create image json and image manifest imageJson=$(cat ${baseJson} | jq ". + {\"rootfs\": {\"diff_ids\": [], \"type\": \"layers\"}}") manifestJson=$(jq -n "[{\"RepoTags\":[\"$imageName:$imageTag\"]}]") - - # The layer list is ordered starting from the base image - layers=$(echo $layers $layerID) - for i in $(echo $layers); do + currentID=$layerID + while [[ -n "$currentID" ]]; do + layerChecksum=$(sha256sum image/$currentID/layer.tar | cut -d ' ' -f1) imageJson=$(echo "$imageJson" | jq ".history |= [{\"created\": \"${created}\"}] + .") - diffId=$(gzip -dc image/$i | sha256sum | cut -d" " -f1) - imageJson=$(echo "$imageJson" | jq ".rootfs.diff_ids |= [\"sha256:$diffId\"] + .") - manifestJson=$(echo "$manifestJson" | jq ".[0].Layers |= [\"$i\"] + .") + imageJson=$(echo "$imageJson" | jq ".rootfs.diff_ids |= [\"sha256:$layerChecksum\"] + .") + manifestJson=$(echo "$manifestJson" | jq ".[0].Layers |= [\"$currentID/layer.tar\"] + .") + + currentID=$(cat image/$currentID/json | (jshon -e parent -u 2>/dev/null || true)) done imageJsonChecksum=$(echo "$imageJson" | sha256sum | cut -d ' ' -f1) - echo "$imageJson" > "image/sha256:$imageJsonChecksum" - manifestJson=$(echo "$manifestJson" | jq ".[0].Config = \"sha256:$imageJsonChecksum\"") + echo "$imageJson" > "image/$imageJsonChecksum.json" + manifestJson=$(echo "$manifestJson" | jq ".[0].Config = \"$imageJsonChecksum.json\"") echo "$manifestJson" > image/manifest.json + # Store the json under the name image/repositories. + jshon -n object \ + -n object -s "$layerID" -i "$imageTag" \ + -i "$imageName" > image/repositories + # Make the image read-only. chmod -R a-w image diff --git a/pkgs/build-support/docker/examples.nix b/pkgs/build-support/docker/examples.nix index 498028fb0886..b9a334971744 100644 --- a/pkgs/build-support/docker/examples.nix +++ b/pkgs/build-support/docker/examples.nix @@ -87,7 +87,7 @@ rec { imageName = "nixos/nix"; imageTag = "1.11"; # this hash will need change if the tag is updated at docker hub - sha256 = "18xvcnl0yvj9kfi5bkimrhhjaa8xhm3jhshh2xd7c0sbfrmfqzvi"; + sha256 = "0nncn9pn5miygan51w34c2p9qssi96jgsaqv44dxxdprc8pg0g83"; }; # 5. example of multiple contents, emacs and vi happily coexisting diff --git a/pkgs/build-support/docker/pull.nix b/pkgs/build-support/docker/pull.nix new file mode 100644 index 000000000000..5ccd0a41c5e4 --- /dev/null +++ b/pkgs/build-support/docker/pull.nix @@ -0,0 +1,32 @@ +{ stdenv, lib, docker, vmTools, utillinux, curl, kmod, dhcp, cacert, e2fsprogs }: +let + nameReplace = name: builtins.replaceStrings ["/" ":"] ["-" "-"] name; +in +# For simplicity we only support sha256. +{ imageName, imageTag ? "latest", imageId ? "${imageName}:${imageTag}" +, sha256, name ? (nameReplace "docker-image-${imageName}-${imageTag}.tar") }: +let + pullImage = vmTools.runInLinuxVM ( + stdenv.mkDerivation { + inherit name imageId; + + certs = "${cacert}/etc/ssl/certs/ca-bundle.crt"; + + builder = ./pull.sh; + + buildInputs = [ curl utillinux docker kmod dhcp cacert e2fsprogs ]; + + outputHashAlgo = "sha256"; + outputHash = sha256; + + impureEnvVars = lib.fetchers.proxyImpureEnvVars; + + preVM = vmTools.createEmptyImage { + size = 2048; + fullName = "${name}-disk"; + }; + + QEMU_OPTS = "-netdev user,id=net0 -device virtio-net-pci,netdev=net0"; + }); +in + pullImage diff --git a/pkgs/build-support/fetchpatch/default.nix b/pkgs/build-support/fetchpatch/default.nix index a9bfac320fb8..e3159d205301 100644 --- a/pkgs/build-support/fetchpatch/default.nix +++ b/pkgs/build-support/fetchpatch/default.nix @@ -27,4 +27,4 @@ fetchurl ({ "$tmpfile" > "$out" ${args.postFetch or ""} ''; -} // builtins.removeAttrs args ["stripLen" "addPrefixes" "excludes"]) +} // builtins.removeAttrs args ["stripLen" "addPrefixes" "excludes" "postFetch"]) diff --git a/pkgs/data/fonts/lm-math/default.nix b/pkgs/data/fonts/lm-math/default.nix new file mode 100644 index 000000000000..348373b89276 --- /dev/null +++ b/pkgs/data/fonts/lm-math/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchzip }: + +stdenv.mkDerivation rec { + name = "latinmodern-math-${version}"; + version = "1.959"; + + src = fetchzip { + url = "www.gust.org.pl/projects/e-foundry/lm-math/download/latinmodern-math-1959.zip"; + sha256 = "15l3lxjciyjmbh0q6jjvzz16ibk4ij79in9fs47qhrfr2wrddpvs"; + }; + + installPhase = '' + mkdir -p $out/share/fonts/opentype/ + mkdir -p $out/share/doc/${name}/ + cp otf/*.otf $out/share/fonts/opentype/ + cp doc/*.txt $out/share/doc/${name}/ + ''; + + outputHashAlgo = "sha256"; + outputHashMode = "recursive"; + outputHash = "05k145bxgxjh7i9gx1ahigxfpc2v2vwzsy2mc41jvvg51kjr8fnn"; + + meta = with stdenv.lib; { + description = "The Latin Modern Math (LM Math) font completes the modernization of the Computer Modern family of typefaces designed and programmed by Donald E. Knuth."; + homepage = http://www.gust.org.pl/projects/e-foundry/lm-math; + # "The Latin Modern Math font is licensed under the GUST Font License (GFL), + # which is a free license, legally equivalent to the LaTeX Project Public + # License (LPPL), version 1.3c or later." - GUST website + license = licenses.lppl13c; + maintainers = with maintainers; [ siddharthist ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/data/fonts/nerdfonts/default.nix b/pkgs/data/fonts/nerdfonts/default.nix index 6b1ebfd68d0d..8815bf688389 100644 --- a/pkgs/data/fonts/nerdfonts/default.nix +++ b/pkgs/data/fonts/nerdfonts/default.nix @@ -20,10 +20,6 @@ stdenv.mkDerivation rec { ./install.sh ${withFont} ''; - outputHashAlgo = "sha256"; - outputHashMode = "recursive"; - outputHash = "1f3qvzl7blqddx3cm2sdml7hi8s56yjc0vqhfajndxr5ybz6g1rw"; - meta = with stdenv.lib; { description = '' Nerd Fonts is a project that attempts to patch as many developer targeted diff --git a/pkgs/data/fonts/tex-gyre-math/default.nix b/pkgs/data/fonts/tex-gyre-math/default.nix new file mode 100644 index 000000000000..e99e0bfb342f --- /dev/null +++ b/pkgs/data/fonts/tex-gyre-math/default.nix @@ -0,0 +1,66 @@ +{ variant, stdenv, fetchzip }: + +let + variants = { + bonum = { + displayName = "Bonum"; + version = "1.005"; + sha256 = "1b6x7siypyxp1lhq7xxdqafwbn6p2p3xm3jb38q999sv8cgslxz8"; + outputHash = "1zjaxkzidqmxakh9d61n0by9mi8hrmir45jppjj6hzwhm3rvknff"; + }; + pagella = { + displayName = "Pagella"; + version = "1.632"; + sha256 = "0f4cgq9w0lc1fbcbfqiv19mdhivbsscl13jmb0ln685641ci2sjr"; + outputHash = "0wz2n1dpx9b8a0qgqy8vl712fxhi87mhcda281xaad62chndwf6k"; + }; + schola = { + displayName = "Schola"; + version = "1.533"; + sha256 = "0caqgkz7gz700h5a1mai0gq8hv7skrgs5nnrs1f7zw1mb9g53ya9"; + outputHash = "0jk4bpxki95a9lmfj4cgpnv1jwlkh8qixbkf498n1x7hkaz03f5n"; + }; + termes = { + displayName = "Termes"; + version = "1.543"; + sha256 = "10ayqfpryfn1l35hy0vwyjzw3a6mfsnzgf78vsnccgk2gz1g9vhz"; + outputHash = "0pa433cgshlypbyrrlp3qq0wg972rngcp37pr8pxdfshgz13q1mm"; + }; + }; + current = variants."${variant}"; + dotless_version = builtins.replaceStrings ["."] [""] current.version; +in stdenv.mkDerivation rec { + name = "tex-gyre-${variant}-math-${current.version}"; + version = "${current.version}"; + + src = fetchzip { + url = "www.gust.org.pl/projects/e-foundry/tg-math/download/texgyre${variant}-math-${dotless_version}.zip"; + sha256 = current.sha256; + }; + + installPhase = '' + mkdir -p $out/share/fonts/opentype/ + mkdir -p $out/share/doc/${name}/ + cp -v opentype/*.otf $out/share/fonts/opentype/ + cp -v doc/*.txt $out/share/doc/${name}/ + ''; + + outputHashAlgo = "sha256"; + outputHashMode = "recursive"; + outputHash = current.outputHash; + + meta = with stdenv.lib; { + longDescription = '' + TeX Gyre ${current.displayName} Math is a math companion for the TeX Gyre + ${current.displayName} family of fonts (see + http://www.gust.org.pl/projects/e-foundry/tex-gyre/) in the OpenType format. + ''; + homepage = http://www.gust.org.pl/projects/e-foundry/tg-math; + # "The TeX Gyre Math fonts are licensed under the GUST Font License (GFL), + # which is a free license, legally equivalent to the LaTeX Project Public + # License (LPPL), version 1.3c or later." - GUST website + license = licenses.lppl13c; + maintainers = with maintainers; [ siddharthist ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/data/misc/brise/default.nix b/pkgs/data/misc/brise/default.nix new file mode 100644 index 000000000000..8b27f4fbf729 --- /dev/null +++ b/pkgs/data/misc/brise/default.nix @@ -0,0 +1,41 @@ +{ stdenv, fetchFromGitHub, librime }: + +stdenv.mkDerivation rec { + name = "brise-unstable-2017-09-16"; + + src = fetchFromGitHub { + owner = "rime"; + repo = "brise"; + rev = "1cfb0fe1d3a4190ce5d034f141941156dd271e80"; + sha256 = "1l13j3cfwida0ycl874fizz2jwjvlxid589a1iciqa9y25k21ql7"; + }; + + buildInputs = [ librime ]; + + postPatch = '' + patchShebangs scripts/* + ''; + + # we need to use fetchFromGitHub to fetch sub-packages before we 'make', + # since nix won't allow networking during 'make' + preBuild = import ./fetchPackages.nix fetchFromGitHub; + + makeFlags = [ "BRISE_BUILD_BINARIES=yes" "PREFIX=$(out)" ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Rime Schema Repository"; + longDescription = '' + This software is a collection of data packages used by Rime + to support various Chinese input methods, including those based on + modern dialects or historical diasystems of the Chinese language. + ''; + homepage = http://rime.im; + # Note that individual packages in this collection + # may be released under different licenses + license = licenses.gpl3; + platforms = platforms.all; + maintainers = [ maintainers.sifmelcara ]; + }; +} diff --git a/pkgs/data/misc/brise/fetchPackages.nix b/pkgs/data/misc/brise/fetchPackages.nix new file mode 100644 index 000000000000..92930c67cc90 --- /dev/null +++ b/pkgs/data/misc/brise/fetchPackages.nix @@ -0,0 +1,130 @@ +fetchFromGitHub: +# generated using https://gist.github.com/sifmelcara/895c71f99500b9d56d68e9a866b58821 +'' +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-array"; + rev = "9ca2b725ae52c9b3185213e3555df1f9d4f1c53f"; + sha256 = "0x3sifdpdivr8ssynjhc4g1zfl6h9hm9nh9p9zb9wkh1ky9z7kha"; +}} array +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-bopomofo"; + rev = "7046ffe42b46915947117f80d901fb9a6e19c1a7"; + sha256 = "09w8jl2dlgp72k49x0l2jiaqb359v576kai4xww6cljgr24ng8pl"; +}} bopomofo +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-cangjie"; + rev = "64242be99c1e6793c9f40fef296a81d07a84e976"; + sha256 = "0v5sk8zrm5p5gg8lszqm0imj9jswjlnfq87nw6m9pg5h5al230ja"; +}} cangjie +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-combo-pinyin"; + rev = "97a7dc4670e0f90ad28e7d67c1543f4f0adc531d"; + sha256 = "0y8iyvq7z6xj3lk2ppk4ggz297wn1r2xxbv53f2710jc7gyzf04q"; +}} combo-pinyin +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-double-pinyin"; + rev = "1b75af4239897fd1e4c99d625b62093e66baff14"; + sha256 = "0p54qx5a6rr55hl997kdcfxjczd9lcddrc5xsy7nhlfyc6108s2v"; +}} double-pinyin +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-emoji"; + rev = "7e527056fe055237fee59463e0d445f3909aaf0c"; + sha256 = "04d35n254viw29yyjf3ml7xljmi63sqgg870swlbi5bikcx7n9jf"; +}} emoji +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-essay"; + rev = "595e35756d16d57d09405e243302b65b4384b5b4"; + sha256 = "10kqhvrz8x17b2pf6x2x2znz5y6cj05c4rgwi1f0xhxiyrgjw9gm"; +}} essay +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-ipa"; + rev = "9e02f8a02e9febb7b2df25f6906881a1df934811"; + sha256 = "1g4v4j1gnv1qspfz88liwj1aa4gaa3aax0x2cif4vxicsm7w372m"; +}} ipa +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-jyutping"; + rev = "3cc76e6e15cc05f1f94b89e750c21f87ce8fc0e4"; + sha256 = "1yggz0yb84z8810s2gmsxkm9lh57fdzddx5v2rb5mqcwnimsd6ap"; +}} jyutping +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-luna-pinyin"; + rev = "da00c3a6f932f094666e98a09f6ce9c7d74c334c"; + sha256 = "0q3g1hj9bay5865h3pz7gv46d7wfka1jdxnddxcbp4zn7gjpsd48"; +}} luna-pinyin +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-middle-chinese"; + rev = "6f9731bac8f289f77d35f1090159f1937e38c1f7"; + sha256 = "0xd9iwk4j5043gfmp7rb57hbarfm6sxr32wiasi6p3c5g355zn89"; +}} middle-chinese +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-pinyin-simp"; + rev = "38c08403c22845f7e2965c1d7a1514b41755d7dc"; + sha256 = "1c0cqljx3d93w27y2flxyqcfd3rd9fvixbw6mxgfjzdb3s42bn8h"; +}} pinyin-simp +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-prelude"; + rev = "120c2aa73b1b5e1bce904901bf13f506295004a5"; + sha256 = "1aah9z58gkqrc18zadsq598ybj8ra22bgka3gma2jmi3rls2znq4"; +}} prelude +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-quick"; + rev = "638abf270e121bc2bfc6029a14ee85a3f4c2188b"; + sha256 = "0l1pma0yxrypnb5cq7jiczy0wa42kdqsc1brqkkccdnp08pa1p1m"; +}} quick +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-scj"; + rev = "6b74ce14be0464bf076d7adc40aea4b120f233ec"; + sha256 = "0lr92knr41mlqd1s0g2lh2h2qr8xka1s46x7iv4d6ghjf0id4gz6"; +}} scj +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-soutzoe"; + rev = "3ab93d1b9ca9ca7cf17ff32bb4418b7a095afc3c"; + sha256 = "1glbvgzx4psasq23511k8ymd7mf1pqvm3z18nzszhs00iif66s3m"; +}} soutzoe +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-stenotype"; + rev = "766f22565f83f5c63c0ea195c936779ec6ae824d"; + sha256 = "0jsvfq7xim99zs5imyk7rpknlaimk6nlxy38fmfxa1r843781mfd"; +}} stenotype +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-stroke"; + rev = "e048967a4c1b956575828f1a20e565efed4b1137"; + sha256 = "10asdz5bj12pnji7afzls6jd9dn2v90l2dgdjf0jfp2kfzd6pxnl"; +}} stroke +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-terra-pinyin"; + rev = "e303507e728def38739f5761c50722eae1f06dd5"; + sha256 = "1krbmx2iq3zw4q1x4aa9c72b9xgrnjrhyxa4h5hnq5l29p9qms4d"; +}} terra-pinyin +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-wubi"; + rev = "97b7d9f93378e98fd11167bd80d54c40e67076aa"; + sha256 = "1cdpbqqkqjbizja0w3f7a826a5bxb39nlf9qf2130x9havmkc89z"; +}} wubi +ln -sv ${fetchFromGitHub { + owner = "rime"; + repo = "rime-wugniu"; + rev = "de40b29f8218cc852bf82b315c7070f1d50bda02"; + sha256 = "1m7miwsqpy49cgqd1bl7z5lkkirj3lc2bdwd1zqfg5zbgfwn0rp8"; +}} wugniu +'' diff --git a/pkgs/desktops/enlightenment/efl.nix b/pkgs/desktops/enlightenment/efl.nix index 67840a4c9e61..d011012e010a 100644 --- a/pkgs/desktops/enlightenment/efl.nix +++ b/pkgs/desktops/enlightenment/efl.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { name = "efl-${version}"; - version = "1.20.3"; + version = "1.20.4"; src = fetchurl { url = "http://download.enlightenment.org/rel/libs/efl/${name}.tar.xz"; - sha256 = "148i8awjdrqzd0xqfc6q4qvhhs46jl15nx7n2nii7lrwzx502wqj"; + sha256 = "1jxha61gsil6hs9zb72zsyh3gmdipvfnlc9v3palb2bm0b23aq9i"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/desktops/gnome-2/platform/libgnome/default.nix b/pkgs/desktops/gnome-2/platform/libgnome/default.nix index 1bffa6211dca..a9957c41ff5d 100644 --- a/pkgs/desktops/gnome-2/platform/libgnome/default.nix +++ b/pkgs/desktops/gnome-2/platform/libgnome/default.nix @@ -11,9 +11,11 @@ stdenv.mkDerivation rec { sha256 = "197pnq8y0knqjhm2fg4j6hbqqm3qfzfnd0irhwxpk1b4hqb3kimj"; }; - outputs = [ "out" "dev" ]; - patches = [ ./new-glib.patch ]; + /* There's a comment containing an invalid utf-8 sequence, breaking glib-mkenums. */ + postPatch = "sed '/returns the true filename/d' -i libgnome/gnome-config.h"; + + outputs = [ "out" "dev" ]; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ popt zlib intltool GConf gnome_vfs libcanberra libtool ]; diff --git a/pkgs/desktops/gnome-2/platform/libgnomeui/default.nix b/pkgs/desktops/gnome-2/platform/libgnomeui/default.nix index d30c38a2cfc4..24cd851eef6a 100644 --- a/pkgs/desktops/gnome-2/platform/libgnomeui/default.nix +++ b/pkgs/desktops/gnome-2/platform/libgnomeui/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgconfig, libxml2, xorg, glib, pango +{ stdenv, fetchurl, fetchpatch, pkgconfig, libxml2, xorg, glib, pango , intltool, libgnome, libgnomecanvas, libbonoboui, GConf, libtool , gnome_vfs, libgnome_keyring, libglade }: @@ -13,6 +13,14 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" ]; + patches = [ + (fetchpatch { + name = "0001-gnome-scores.h-Convert-to-UTF-8.patch"; + url = https://github.com/GNOME/libgnomeui/commit/30334c28794ef85d8973f4ed0779b5ceed6594f2.diff; + sha256 = "1sn8j8dkam14wfkpw8nga3gk63wniff243mzv3jp0fvv52q8sqhk"; + }) + ]; + nativeBuildInputs = [ pkgconfig intltool ]; buildInputs = [ xorg.xlibsWrapper libxml2 GConf pango glib libgnome_keyring libglade libtool ]; diff --git a/pkgs/desktops/gnome-3/core/evolution-data-server/default.nix b/pkgs/desktops/gnome-3/core/evolution-data-server/default.nix index 9d51dc969d33..e2472a403699 100644 --- a/pkgs/desktops/gnome-3/core/evolution-data-server/default.nix +++ b/pkgs/desktops/gnome-3/core/evolution-data-server/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { propagatedBuildInputs = [ libsecret nss nspr libical db ]; # uoa irrelevant for now - cmakeFlags = [ "-DENABLE_UOA=OFF" "-DENABLE_GOA=OFF" ] + cmakeFlags = [ "-DENABLE_UOA=OFF" ] ++ stdenv.lib.optionals valaSupport [ "-DENABLE_VALA_BINDINGS=ON" "-DENABLE_INTROSPECTION=ON" "-DCMAKE_SKIP_BUILD_RPATH=OFF" ]; diff --git a/pkgs/desktops/gnome-3/core/gcr/default.nix b/pkgs/desktops/gnome-3/core/gcr/default.nix index 55eebf77be59..21b9d89e3c3b 100644 --- a/pkgs/desktops/gnome-3/core/gcr/default.nix +++ b/pkgs/desktops/gnome-3/core/gcr/default.nix @@ -5,12 +5,16 @@ stdenv.mkDerivation rec { inherit (import ./src.nix fetchurl) name src; - buildInputs = [ - pkgconfig intltool gnupg glib gobjectIntrospection libxslt - libgcrypt libtasn1 dbus_glib gtk pango gdk_pixbuf atk makeWrapper vala_0_32 + outputs = [ "out" "dev" ]; + + buildInputs = let + gpg = gnupg.override { guiSupport = false; }; # prevent build cycle with pinentry_gnome + in [ + pkgconfig intltool gpg gobjectIntrospection libxslt + libgcrypt libtasn1 dbus_glib pango gdk_pixbuf atk makeWrapper vala_0_32 ]; - propagatedBuildInputs = [ p11_kit ]; + propagatedBuildInputs = [ glib gtk p11_kit ]; #doCheck = true; diff --git a/pkgs/desktops/gnome-3/core/gnome-control-center/default.nix b/pkgs/desktops/gnome-3/core/gnome-control-center/default.nix index b116c2902da3..a6cc7ec962a0 100644 --- a/pkgs/desktops/gnome-3/core/gnome-control-center/default.nix +++ b/pkgs/desktops/gnome-3/core/gnome-control-center/default.nix @@ -41,6 +41,9 @@ stdenv.mkDerivation rec { preFixup = with gnome3; '' gappsWrapperArgs+=( --prefix XDG_DATA_DIRS : "${gnome3.gnome_themes_standard}/share:${sound-theme-freedesktop}/share" + # Thumbnailers (for setting user profile pictures) + --prefix XDG_DATA_DIRS : "${gdk_pixbuf}/share" + --prefix XDG_DATA_DIRS : "${librsvg}/share" ) for i in $out/share/applications/*; do substituteInPlace $i --replace "gnome-control-center" "$out/bin/gnome-control-center" diff --git a/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix b/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix index df47c1a477b9..4baafecadd0a 100644 --- a/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix +++ b/pkgs/desktops/gnome-3/core/gnome-keyring/default.nix @@ -5,6 +5,8 @@ stdenv.mkDerivation rec { inherit (import ./src.nix fetchurl) name src; + outputs = [ "out" "dev" ]; + buildInputs = with gnome3; [ dbus libgcrypt pam python gtk3 gconf libgnome_keyring pango gcr gdk_pixbuf atk p11_kit diff --git a/pkgs/desktops/gnome-3/core/gnome-online-accounts/default.nix b/pkgs/desktops/gnome-3/core/gnome-online-accounts/default.nix index 29f6ae3e860e..f2a23b63ea01 100644 --- a/pkgs/desktops/gnome-3/core/gnome-online-accounts/default.nix +++ b/pkgs/desktops/gnome-3/core/gnome-online-accounts/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgconfig, glib, libxslt, gtk, wrapGAppsHook +{ stdenv, fetchurl, pkgconfig, vala, glib, libxslt, gtk, wrapGAppsHook , webkitgtk, json_glib, rest, libsecret, dbus_glib, gnome_common , telepathy_glib, intltool, dbus_libs, icu, glib_networking , libsoup, docbook_xsl_ns, docbook_xsl, gnome3 @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; buildInputs = [ pkgconfig glib libxslt gtk webkitgtk json_glib rest gnome_common wrapGAppsHook - libsecret dbus_glib telepathy_glib glib_networking intltool icu libsoup + libsecret dbus_glib telepathy_glib glib_networking intltool icu libsoup vala docbook_xsl_ns docbook_xsl gnome3.defaultIconTheme ]; meta = with stdenv.lib; { diff --git a/pkgs/desktops/gnome-3/core/gucharmap/default.nix b/pkgs/desktops/gnome-3/core/gucharmap/default.nix index 05aff866606f..58d9901ad012 100644 --- a/pkgs/desktops/gnome-3/core/gucharmap/default.nix +++ b/pkgs/desktops/gnome-3/core/gucharmap/default.nix @@ -1,6 +1,7 @@ { stdenv, intltool, fetchurl, pkgconfig, gtk3 , glib, desktop_file_utils, bash, appdata-tools -, makeWrapper, gnome3, file, itstool, libxml2 }: +, wrapGAppsHook, gnome3, itstool, libxml2 +, callPackage, unzip }: # TODO: icons and theme still does not work # use packaged gnome3.adwaita-icon-theme @@ -12,16 +13,17 @@ stdenv.mkDerivation rec { propagatedUserEnvPkgs = [ gnome3.gnome_themes_standard ]; - preConfigure = "substituteInPlace ./configure --replace /usr/bin/file ${file}/bin/file"; + preConfigure = "patchShebangs gucharmap/gen-guch-unicode-tables.pl"; - buildInputs = [ pkgconfig gtk3 intltool itstool glib appdata-tools - gnome3.yelp_tools libxml2 file desktop_file_utils - gnome3.gsettings_desktop_schemas makeWrapper ]; + nativeBuildInputs = [ pkgconfig wrapGAppsHook unzip ]; - preFixup = '' - wrapProgram "$out/bin/gucharmap" \ - --prefix XDG_DATA_DIRS : "${gnome3.gnome_themes_standard}/share:$out/share:$GSETTINGS_SCHEMAS_PATH" - ''; + buildInputs = [ gtk3 intltool itstool glib appdata-tools + gnome3.yelp_tools libxml2 desktop_file_utils + gnome3.gsettings_desktop_schemas ]; + + unicode-data = callPackage ./unicode-data.nix {}; + + configureFlags = "--with-unicode-data=${unicode-data}"; meta = with stdenv.lib; { homepage = https://wiki.gnome.org/Apps/Gucharmap; diff --git a/pkgs/desktops/gnome-3/core/gucharmap/src.nix b/pkgs/desktops/gnome-3/core/gucharmap/src.nix index 69c0dd600251..67d00c269f53 100644 --- a/pkgs/desktops/gnome-3/core/gucharmap/src.nix +++ b/pkgs/desktops/gnome-3/core/gucharmap/src.nix @@ -1,10 +1,10 @@ # Autogenerated by maintainers/scripts/gnome.sh update fetchurl: { - name = "gucharmap-3.18.2"; + name = "gucharmap-10.0.1"; src = fetchurl { - url = mirror://gnome/sources/gucharmap/3.18/gucharmap-3.18.2.tar.xz; - sha256 = "80141d3e892c3c4812c1a8fad8f89978559ef19e933843267e6e9a5524c09ec9"; + url = mirror://gnome/sources/gucharmap/10.0/gucharmap-10.0.1.tar.xz; + sha256 = "51a2bf91c4590ea2159f828156864f088a0bd4c12e7a1c396002a23d48b2d5e2"; }; } diff --git a/pkgs/desktops/gnome-3/core/gucharmap/unicode-data.nix b/pkgs/desktops/gnome-3/core/gucharmap/unicode-data.nix new file mode 100644 index 000000000000..84770a17162c --- /dev/null +++ b/pkgs/desktops/gnome-3/core/gucharmap/unicode-data.nix @@ -0,0 +1,44 @@ +{fetchurl, stdenv}: +stdenv.mkDerivation { + name = "unicode-data-10.0.0"; + srcs = [ + (fetchurl { + url = "http://www.unicode.org/Public/10.0.0/ucd/Blocks.txt"; + sha256 = "19zf2kd198mcv1paa194c1zf36hay1irbxssi35yi2pd8ad69qas"; + }) + (fetchurl { + url = "http://www.unicode.org/Public/10.0.0/ucd/DerivedAge.txt"; + sha256 = "1h9p1g0wnh686l6cqar7cmky465vwc6vjzzn1s7v0i9zcjaqkr4h"; + }) + (fetchurl { + url = "http://www.unicode.org/Public/10.0.0/ucd/NamesList.txt"; + sha256 = "0gvpcyq852rnlqmx4y5i1by7bavvcw6rj40i54w48yc7xr3zmgd1"; + }) + (fetchurl { + url = "http://www.unicode.org/Public/10.0.0/ucd/Scripts.txt"; + sha256 = "0b9prz2hs6w61afqaplcxnv115f8yk4d5hn9dc5hks8nqpj28bnh"; + }) + (fetchurl { + url = "http://www.unicode.org/Public/10.0.0/ucd/UnicodeData.txt"; + sha256 = "1cfak1j753zcrbgixwgppyxhm4w8vda8vxhqymi7n5ljfi6kwhjj"; + }) + (fetchurl { + url = "http://www.unicode.org/Public/10.0.0/ucd/Unihan.zip"; + sha256 = "199kz6laypkvc0ykms6d7bkb571jmpds39sv2p7kd5jjm1ij08q1"; + }) + ]; + phases = "installPhase"; + installPhase = with stdenv.lib; '' + mkdir $out + for f in $srcs;do + cp $f $out/$(stripHash $f) + done + ''; + meta = with stdenv.lib; { + homepage = http://www.unicode.org/ucd/; + description = "Unicode Character Database"; + maintainers = gnome3.maintainers; + license = licenses.mit; + platforms = platforms.all; + }; +} diff --git a/pkgs/desktops/gnome-3/core/nautilus/default.nix b/pkgs/desktops/gnome-3/core/nautilus/default.nix index d508f1483598..f987df460349 100644 --- a/pkgs/desktops/gnome-3/core/nautilus/default.nix +++ b/pkgs/desktops/gnome-3/core/nautilus/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, pkgconfig, libxml2, dbus_glib, shared_mime_info, libexif , gtk, gnome3, libunique, intltool, gobjectIntrospection, gnome-autoar, glib -, libnotify, wrapGAppsHook, exempi, librsvg, tracker, libselinux }: +, libnotify, wrapGAppsHook, exempi, librsvg, tracker, libselinux, gdk_pixbuf }: stdenv.mkDerivation rec { inherit (import ./src.nix fetchurl) name src; @@ -16,6 +16,14 @@ stdenv.mkDerivation rec { # fatal error: gio/gunixinputstream.h: No such file or directory NIX_CFLAGS_COMPILE = "-I${glib.dev}/include/gio-unix-2.0"; + preFixup = '' + gappsWrapperArgs+=( + # Thumbnailers + --prefix XDG_DATA_DIRS : "${gdk_pixbuf}/share" + --prefix XDG_DATA_DIRS : "${librsvg}/share" + ) + ''; + # hardeningDisable = [ "format" ]; enableParallelBuilding = true; diff --git a/pkgs/applications/graphics/simple-scan/default.nix b/pkgs/desktops/gnome-3/core/simple-scan/default.nix index 0c800ce98593..0b453d5c5332 100644 --- a/pkgs/applications/graphics/simple-scan/default.nix +++ b/pkgs/desktops/gnome-3/core/simple-scan/default.nix @@ -3,14 +3,7 @@ , gnome3 }: stdenv.mkDerivation rec { - name = "simple-scan-${version}"; - version = "${major_version}.0.1"; - major_version = "3.22"; - - src = fetchurl { - url = "https://launchpad.net/simple-scan/${major_version}/${version}/+download/${name}.tar.xz"; - sha256 = "0l1b3llkdlqq0bcjx1cadba67l2zb4zfykdaprpjbjbr6gkbc1f5"; - }; + inherit (import ./src.nix fetchurl) name src; buildInputs = [ cairo colord glib gnome3.defaultIconTheme gusb gtk3 libusb1 libxml2 sane-backends vala_0_32 ]; nativeBuildInputs = [ intltool itstool pkgconfig wrapGAppsHook ]; diff --git a/pkgs/desktops/gnome-3/core/simple-scan/src.nix b/pkgs/desktops/gnome-3/core/simple-scan/src.nix new file mode 100644 index 000000000000..cea148891a72 --- /dev/null +++ b/pkgs/desktops/gnome-3/core/simple-scan/src.nix @@ -0,0 +1,10 @@ +# Autogenerated by maintainers/scripts/gnome.sh update + +fetchurl: { + name = "simple-scan-3.22.0.1"; + + src = fetchurl { + url = mirror://gnome/sources/simple-scan/3.22/simple-scan-3.22.0.1.tar.xz; + sha256 = "c505b6e63379c9256fbeaa4def3e595fd063d46a8a852ed90218d336291d2b50"; + }; +} diff --git a/pkgs/desktops/gnome-3/default.nix b/pkgs/desktops/gnome-3/default.nix index 7be1f79be4c5..fcb36fb8ded2 100644 --- a/pkgs/desktops/gnome-3/default.nix +++ b/pkgs/desktops/gnome-3/default.nix @@ -30,7 +30,7 @@ let optionalPackages = with gnome3; [ baobab eog epiphany evince gucharmap nautilus totem vino yelp gnome-bluetooth gnome-calculator gnome-contacts gnome-font-viewer gnome-screenshot - gnome-system-log gnome-system-monitor + gnome-system-log gnome-system-monitor simple-scan gnome_terminal gnome-user-docs evolution file-roller gedit gnome-clocks gnome-music gnome-tweak-tool gnome-photos nautilus-sendto dconf-editor vinagre gnome-weather gnome-logs @@ -230,6 +230,8 @@ let rest = callPackage ./core/rest { }; + simple-scan = callPackage ./core/simple-scan { }; + sushi = callPackage ./core/sushi { }; totem = callPackage ./core/totem { }; diff --git a/pkgs/desktops/gnome-3/misc/libgda/default.nix b/pkgs/desktops/gnome-3/misc/libgda/default.nix index 2e5b0a4af840..0ad6a590eb37 100644 --- a/pkgs/desktops/gnome-3/misc/libgda/default.nix +++ b/pkgs/desktops/gnome-3/misc/libgda/default.nix @@ -3,6 +3,14 @@ stdenv.mkDerivation rec { inherit (import ./src.nix fetchurl) name src; + patches = [ + (fetchurl { + name = "libgda-fix-encoding-of-copyright-headers.patch"; + url = https://bug787685.bugzilla-attachments.gnome.org/attachment.cgi?id=359901; + sha256 = "11qj7f7zsiw8jy18vlwz2prlxpg4iq350sws3qwfwsv0lnmncmfq"; + }) + ]; + configureFlags = [ "--enable-gi-system-install=no" ]; diff --git a/pkgs/desktops/lxqt/optional/screengrab/default.nix b/pkgs/desktops/lxqt/optional/screengrab/default.nix index e8cc7c30fa15..4bd040c00a8b 100644 --- a/pkgs/desktops/lxqt/optional/screengrab/default.nix +++ b/pkgs/desktops/lxqt/optional/screengrab/default.nix @@ -1,13 +1,14 @@ { stdenv, fetchFromGitHub, cmake, pkgconfig, qtbase, qttools, qtx11extras, qtsvg, kwindowsystem, libqtxdg, xorg }: stdenv.mkDerivation rec { - name = "screengrab-unstable-2017-02-18"; + name = "screengrab-${version}"; + version = "1.97"; srcs = fetchFromGitHub { owner = "QtDesktop"; repo = "screengrab"; - rev = "6fc03c70fe132b89f35d4cef2f62c9d804de3b64"; - sha256 = "1h3rlpmaqxzysaibcw7s5msbrwaxkg6sz7a8xv6cqzjvggv09my0"; + rev = version; + sha256 = "0qhdxnv1pz745qgvdv5x7kyfx9dz9rrq0wxyfimppzxcszv4pl2z"; }; nativeBuildInputs = [ cmake pkgconfig ]; diff --git a/pkgs/development/compilers/closure/default.nix b/pkgs/development/compilers/closure/default.nix index 86e04b491e57..8d1b06f52b70 100644 --- a/pkgs/development/compilers/closure/default.nix +++ b/pkgs/development/compilers/closure/default.nix @@ -1,31 +1,30 @@ -{ stdenv, fetchurl, jre, gnutar, bash }: +{ stdenv, fetchurl, jre, makeWrapper }: stdenv.mkDerivation rec { name = "closure-compiler-${version}"; - version = "20170218"; + version = "20170910"; src = fetchurl { - url = "http://dl.google.com/closure-compiler/compiler-${version}.tar.gz"; - sha256 = "06snabmpy07x4xm8d1xgq5dfzbjli10xkxk3nx9jms39zkj493cd"; + url = "https://dl.google.com/closure-compiler/compiler-${version}.tar.gz"; + sha256 = "0znzsks8ql9qajhcjzfkhmnpz8zs6b8cji04fhivyq973jpxxrak"; }; - phases = [ "installPhase" ]; + sourceRoot = "."; - buildInputs = [ gnutar ]; + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ jre ]; installPhase = '' mkdir -p $out/share/java $out/bin - tar -xzf $src - cp -r closure-compiler-v${version}.jar $out/share/java/ - echo "#!${bash}/bin/bash" > $out/bin/closure-compiler - echo "${jre}/bin/java -jar $out/share/java/closure-compiler-v${version}.jar \"\$@\"" >> $out/bin/closure-compiler - chmod +x $out/bin/closure-compiler + cp closure-compiler-v${version}.jar $out/share/java + makeWrapper ${jre}/bin/java $out/bin/closure-compiler \ + --add-flags "-jar $out/share/java/closure-compiler-v${version}.jar" ''; - meta = { + meta = with stdenv.lib; { description = "A tool for making JavaScript download and run faster"; homepage = https://developers.google.com/closure/compiler/; - license = stdenv.lib.licenses.asl20; - platforms = stdenv.lib.platforms.unix; + license = licenses.asl20; + platforms = platforms.all; }; } diff --git a/pkgs/development/compilers/crystal/default.nix b/pkgs/development/compilers/crystal/default.nix index 62a504ef9668..6b817d06553e 100644 --- a/pkgs/development/compilers/crystal/default.nix +++ b/pkgs/development/compilers/crystal/default.nix @@ -1,81 +1,71 @@ -{ stdenv, fetchurl, boehmgc, libatomic_ops, pcre, libevent, libiconv, llvm_4, makeWrapper }: +{ stdenv, fetchurl, boehmgc, libatomic_ops, pcre, libevent, libiconv, llvm, makeWrapper }: stdenv.mkDerivation rec { - version = "0.23.0"; - name = "crystal-${version}-1"; - arch = - { - "x86_64-linux" = "linux-x86_64"; - "i686-linux" = "linux-i686"; - "x86_64-darwin" = "darwin-x86_64"; - }."${stdenv.system}" or (throw "system ${stdenv.system} not supported"); - - prebuiltBinary = fetchurl { - url = "https://github.com/crystal-lang/crystal/releases/download/${version}/crystal-${version}-1-${arch}.tar.gz"; - sha256 = - { - "x86_64-linux" = "0nhs7swbll8hrk15kmmywngkhij80x62axiskb1gjmiwvzhlh0qx"; - "i686-linux" = "03xp8d3lqflzzm26lpdn4yavj87qzgd6xyrqxp2pn9ybwrq8fx8a"; - "x86_64-darwin" = "1prz6c1gs8z7dgpdy2id2mjn1c8f5p2bf9b39985bav448njbyjz"; - }."${stdenv.system}" or (throw "system ${stdenv.system} not supported"); - }; + name = "crystal-${version}"; + version = "0.23.1"; src = fetchurl { url = "https://github.com/crystal-lang/crystal/archive/${version}.tar.gz"; - sha256 = "05ymwmjkl1b4m888p725kybpiap5ag2vj8l07d59j02inm5r0rcv"; + sha256 = "8cf1b9a4eab29fca2f779ea186ae18f7ce444ce189c621925fa1a0c61dd5ff55"; + }; + + prebuiltName = "crystal-0.23.0-1"; + prebuiltSrc = let arch = { + "x86_64-linux" = "linux-x86_64"; + "i686-linux" = "linux-i686"; + "x86_64-darwin" = "darwin-x86_64"; + }."${stdenv.system}" or (throw "system ${stdenv.system} not supported"); + in fetchurl { + url = "https://github.com/crystal-lang/crystal/releases/download/0.23.0/${prebuiltName}-${arch}.tar.gz"; + sha256 = { + "x86_64-linux" = "0nhs7swbll8hrk15kmmywngkhij80x62axiskb1gjmiwvzhlh0qx"; + "i686-linux" = "03xp8d3lqflzzm26lpdn4yavj87qzgd6xyrqxp2pn9ybwrq8fx8a"; + "x86_64-darwin" = "1prz6c1gs8z7dgpdy2id2mjn1c8f5p2bf9b39985bav448njbyjz"; + }."${stdenv.system}"; }; + srcs = [ src prebuiltSrc ]; + # crystal on Darwin needs libiconv to build - buildInputs = [ - boehmgc libatomic_ops pcre libevent llvm_4 makeWrapper + libs = [ + boehmgc libatomic_ops pcre libevent ] ++ stdenv.lib.optionals stdenv.isDarwin [ libiconv ]; - libPath = stdenv.lib.makeLibraryPath ([ - boehmgc libatomic_ops pcre libevent - ] ++ stdenv.lib.optionals stdenv.isDarwin [ - libiconv - ]); + nativeBuildInputs = [ makeWrapper ]; - unpackPhase = '' - tar zxf ${src} - tar zxf ${prebuiltBinary} - ''; + buildInputs = libs ++ [ llvm ]; + + libPath = stdenv.lib.makeLibraryPath libs; - sourceRoot = "."; + sourceRoot = "${name}"; fixPrebuiltBinary = if stdenv.isDarwin then '' - wrapProgram $(pwd)/crystal-${version}-1/embedded/bin/crystal \ + wrapProgram ../${prebuiltName}/embedded/bin/crystal \ --suffix DYLD_LIBRARY_PATH : $libPath '' else '' patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ - crystal-${version}-1/embedded/bin/crystal + ../${prebuiltName}/embedded/bin/crystal patchelf --set-rpath ${ stdenv.lib.makeLibraryPath [ stdenv.cc.cc ] } \ - crystal-${version}-1/embedded/bin/crystal + ../${prebuiltName}/embedded/bin/crystal ''; - buildPhase = '' - # patch the script which launches the prebuilt compiler - substituteInPlace $(pwd)/crystal-${version}-1/bin/crystal --replace \ - "/usr/bin/env bash" "${stdenv.shell}" - substituteInPlace $(pwd)/crystal-${version}/bin/crystal --replace \ - "/usr/bin/env bash" "${stdenv.shell}" - + preBuild = '' + patchShebangs bin/crystal + patchShebangs ../${prebuiltName}/bin/crystal ${fixPrebuiltBinary} - - cd crystal-${version} - make release=1 PATH="../crystal-${version}-1/bin:$PATH" - make doc + export PATH="$(pwd)/../${prebuiltName}/bin:$PATH" ''; + makeFlags = [ "CRYSTAL_CONFIG_VERSION=${version}" "release=1" "all" "doc" ]; + installPhase = '' install -Dm755 .build/crystal $out/bin/crystal wrapProgram $out/bin/crystal \ --suffix CRYSTAL_PATH : $out/lib/crystal \ --suffix LIBRARY_PATH : $libPath - install -dm755 $out/lib/crystal cp -r src/* $out/lib/crystal/ @@ -93,12 +83,13 @@ stdenv.mkDerivation rec { dontStrip = true; + enableParallelBuilding = true; + meta = { description = "A compiled language with Ruby like syntax and type inference"; homepage = https://crystal-lang.org/; license = stdenv.lib.licenses.asl20; - maintainers = with stdenv.lib.maintainers; [ mingchuan ]; + maintainers = with stdenv.lib.maintainers; [ sifmelcara david50407 ]; platforms = [ "x86_64-linux" "i686-linux" "x86_64-darwin" ]; }; } - diff --git a/pkgs/development/compilers/fstar/default.nix b/pkgs/development/compilers/fstar/default.nix index 0887dd992526..3aef4e3ba89d 100644 --- a/pkgs/development/compilers/fstar/default.nix +++ b/pkgs/development/compilers/fstar/default.nix @@ -1,78 +1,30 @@ -{ stdenv, fetchFromGitHub, mono, fsharp, dotnetPackages, z3, ocamlPackages, openssl, makeWrapper, pkgconfig, file }: +{ stdenv, fetchFromGitHub, z3, ocamlPackages, makeWrapper }: stdenv.mkDerivation rec { name = "fstar-${version}"; - version = "0.9.4.0"; + version = "0.9.5.0"; src = fetchFromGitHub { owner = "FStarLang"; repo = "FStar"; rev = "v${version}"; - sha256 = "130779p5plsgvz0dkcqycns3vwrvyfl138nq2xdhd3rkdsbyyvb7"; + sha256 = "1pi2ny3kpmvm85x8w98anhjf0hp0wccc51m7v697qypn5cl4ydqk"; }; nativeBuildInputs = [ makeWrapper ]; buildInputs = with ocamlPackages; [ - mono fsharp z3 dotnetPackages.FsLexYacc ocaml findlib ocaml_batteries - zarith camlp4 yojson pprint openssl pkgconfig file + z3 ocaml findlib ocaml_batteries menhir stdint + zarith camlp4 yojson pprint ]; - preBuild = '' - substituteInPlace src/Makefile --replace "\$(RUNTIME) VS/.nuget/NuGet.exe" "true" \ - --replace Darwin xyz - substituteInPlace src/VS/.nuget/NuGet.targets --replace "mono" "true" + makeFlags = [ "PREFIX=$(out)" ]; - # Fails with bad interpreter otherwise + preBuild = '' patchShebangs src/tools patchShebangs bin - - export FSharpTargetsPath="$(dirname $(pkg-config FSharp.Core --variable=Libraries))/Microsoft.FSharp.Targets" - # remove hardcoded windows paths - sed -i '/<FSharpTargetsPath/d' src/*/*.fsproj - - mkdir -p src/VS/packages/FsLexYacc.6.1.0 - ln -s ${dotnetPackages.FsLexYacc}/lib/dotnet/FsLexYacc src/VS/packages/FsLexYacc.6.1.0/build - ''; - - makeFlags = [ - "FSYACC=${dotnetPackages.FsLexYacc}/bin/fsyacc" - "FSLEX=${dotnetPackages.FsLexYacc}/bin/fslex" - "NUGET=true" - "PREFIX=$(out)" - ]; - - buildFlags = "-C src"; - - # Now that the .NET fstar.exe is built, use it to build the native OCaml binary - postBuild = '' - patchShebangs bin/fstar.exe - - # Workaround for fsharp/fsharp#419 - cp ${fsharp}/lib/mono/4.5/FSharp.Core.dll bin/ - - # Use the built .NET binary to extract the sources of itself from F* to OCaml - make ''${enableParallelBuilding:+-j''${NIX_BUILD_CORES} -l''${NIX_BUILD_CORES}} \ - $makeFlags "''${makeFlagsArray[@]}" \ - ocaml -C src - - # Build the extracted OCaml sources - make ''${enableParallelBuilding:+-j''${NIX_BUILD_CORES} -l''${NIX_BUILD_CORES}} \ - $makeFlags "''${makeFlagsArray[@]}" \ - -C src/ocaml-output ''; - - # https://github.com/FStarLang/FStar/issues/676 - doCheck = false; - - preCheck = "ulimit -s unlimited"; - - # Basic test suite: - #checkFlags = "VERBOSE=y -C examples"; - - # Complete, but heavyweight test suite: - checkTarget = "regressions"; - checkFlags = "VERBOSE=y -C src"; + buildFlags = "-C src/ocaml-output"; installFlags = "-C src/ocaml-output"; @@ -85,5 +37,6 @@ stdenv.mkDerivation rec { homepage = https://www.fstar-lang.org; license = licenses.asl20; platforms = with platforms; darwin ++ linux; + maintainers = with maintainers; [ gebner ]; }; } diff --git a/pkgs/development/compilers/gcc/6/default.nix b/pkgs/development/compilers/gcc/6/default.nix index 2c8a9696e693..47cb93c19953 100644 --- a/pkgs/development/compilers/gcc/6/default.nix +++ b/pkgs/development/compilers/gcc/6/default.nix @@ -217,7 +217,8 @@ stdenv.mkDerivation ({ inherit patches; - outputs = [ "out" "lib" "man" "info" ]; + outputs = if langJava || langGo then ["out" "man" "info"] + else [ "out" "lib" "man" "info" ]; setOutputFlags = false; NIX_NO_SELF_RPATH = true; @@ -323,7 +324,11 @@ stdenv.mkDerivation ({ export LDFLAGS_FOR_TARGET="-Wl,-rpath,$prefix/lib/amd64 $LDFLAGS_FOR_TARGET" export CXXFLAGS_FOR_TARGET="-Wl,-rpath,$prefix/lib/amd64 $CXXFLAGS_FOR_TARGET" export CFLAGS_FOR_TARGET="-Wl,-rpath,$prefix/lib/amd64 $CFLAGS_FOR_TARGET" - ''; + '' + + stdenv.lib.optionalString (langJava || langGo) '' + export lib=$out; + '' + ; dontDisableStatic = true; @@ -565,4 +570,10 @@ stdenv.mkDerivation ({ // optionalAttrs (!stripped || targetPlatform != hostPlatform) { dontStrip = true; } // optionalAttrs (enableMultilib) { dontMoveLib64 = true; } + +// optionalAttrs (langJava) { + postFixup = '' + target="$(echo "$out/libexec/gcc"/*/*/ecj*)" + patchelf --set-rpath "$(patchelf --print-rpath "$target"):$out/lib" "$target" + '';} ) diff --git a/pkgs/development/compilers/ghcjs/ghcjs.patch b/pkgs/development/compilers/ghcjs/ghcjs.patch index 9f4fa3a8b7ae..bbb5b30468cb 100644 --- a/pkgs/development/compilers/ghcjs/ghcjs.patch +++ b/pkgs/development/compilers/ghcjs/ghcjs.patch @@ -46,24 +46,6 @@ index db8b12e..7b815c5 100644 mapM_ patchPackage =<< allPackages preparePrimops buildGenPrim -@@ -1141,7 +1132,7 @@ cabalStage1 pkgs = sub $ do - globalFlags <- cabalGlobalFlags - flags <- cabalInstallFlags (length pkgs == 1) - let args = globalFlags ++ ("install" : pkgs) ++ -- [ "--solver=topdown" -- the modular solver refuses to install stage1 packages -+ [ "--allow-boot-library-installs" - ] ++ map ("--configure-option="<>) configureOpts ++ flags - checkInstallPlan pkgs args - cabal_ args -@@ -1162,7 +1153,7 @@ cabalInstall pkgs = do - -- uses somewhat fragile parsing of --dry-run output, find a better way - checkInstallPlan :: [Package] -> [Text] -> B () - checkInstallPlan pkgs opts = do -- plan <- cabal (opts ++ ["-v2", "--dry-run"]) -+ plan <- cabal (opts ++ ["-vverbose+nowrap", "--dry-run"]) - when (hasReinstalls plan || hasUnexpectedInstalls plan || hasNewVersion plan) (err plan) - where - hasReinstalls = T.isInfixOf "(reinstall)" -- reject reinstalls @@ -1201,14 +1192,14 @@ cabalInstallFlags parmakeGhcjs = do , "--avoid-reinstalls" , "--builddir", "dist" diff --git a/pkgs/development/compilers/ghcjs/head.nix b/pkgs/development/compilers/ghcjs/head.nix index 01b13262ef0c..7f725a3a9adf 100644 --- a/pkgs/development/compilers/ghcjs/head.nix +++ b/pkgs/development/compilers/ghcjs/head.nix @@ -6,19 +6,15 @@ bootPkgs.callPackage ./base.nix { inherit bootPkgs; ghcjsSrc = fetchFromGitHub { - # TODO: switch back to the regular ghcjs repo - # when https://github.com/ghcjs/ghcjs/pull/573 is merged. - owner = "k0001"; + owner = "ghcjs"; repo = "ghcjs"; - rev = "600015e085a28da601b65a41c513d4a458fcd184"; - sha256 = "01kirrg0fnfwhllvwgfqjiwzwj4yv4lyig87x61n9jp6y5shzjdx"; + rev = "2b3759942fb5b2fc1a58d314d9b098d4622fa6b6"; + sha256 = "15asapg0va8dvcdycsx8dgk4xcpdnhml4h31wka6vvxf5anzz8aw"; }; ghcjsBootSrc = fetchgit { - # TODO: switch back to git://github.com/ghcjs/ghcjs-boot.git - # when https://github.com/ghcjs/ghcjs-boot/pull/41 is merged. - url = git://github.com/basvandijk/ghcjs-boot.git; - rev = "19a3b157ecb807c2224daffda5baecc92b76af35"; - sha256 = "16sgr8vfr1nx5ljnk8gckgjk70zpa67ix4dbr9aizkwyz41ilfrb"; + url = git://github.com/ghcjs/ghcjs-boot.git; + rev = "106e144cca6529a1b9612c11aea5d6ef65b96745"; + sha256 = "0gxg8iiwvm93x1dwhxypczn9qiz4m1xvj8i7cf4snfdy2jdyhi5l"; fetchSubmodules = true; }; diff --git a/pkgs/development/compilers/ghcjs/head_stage2.nix b/pkgs/development/compilers/ghcjs/head_stage2.nix index aa19cfea9718..18c7a76dd3af 100644 --- a/pkgs/development/compilers/ghcjs/head_stage2.nix +++ b/pkgs/development/compilers/ghcjs/head_stage2.nix @@ -2,117 +2,145 @@ { async = callPackage - ({ mkDerivation, base, HUnit, stm, test-framework - , test-framework-hunit, stdenv - }: - mkDerivation { - pname = "async"; - version = "2.1.1"; - src = "${ghcjsBoot}/boot/async"; - doCheck = false; - libraryHaskellDepends = [ base stm ]; - testHaskellDepends = [ - base HUnit test-framework test-framework-hunit - ]; - jailbreak = true; - homepage = https://github.com/simonmar/async; - description = "Run IO operations asynchronously and wait for their results"; - license = stdenv.lib.licenses.bsd3; - }) {}; + ({ mkDerivation, base, HUnit, stdenv, stm, test-framework + , test-framework-hunit + }: + mkDerivation { + pname = "async"; + version = "2.1.1"; + src = "${ghcjsBoot}/boot/async"; + doCheck = false; + libraryHaskellDepends = [ base stm ]; + testHaskellDepends = [ + base HUnit test-framework test-framework-hunit + ]; + jailbreak = true; + homepage = "https://github.com/simonmar/async"; + description = "Run IO operations asynchronously and wait for their results"; + license = stdenv.lib.licenses.bsd3; + }) {}; aeson = callPackage ({ mkDerivation, attoparsec, base, base-compat, base-orphans - , base16-bytestring, bytestring, containers, deepseq, directory - , dlist, fetchgit, filepath, generic-deriving, ghc-prim, hashable - , hashable-time, HUnit, integer-logarithms, QuickCheck - , quickcheck-instances, scientific, stdenv, tagged - , template-haskell, test-framework, test-framework-hunit - , test-framework-quickcheck2, text, time, time-locale-compat - , unordered-containers, uuid-types, vector - }: - mkDerivation { - pname = "aeson"; - version = "1.1.1.0"; - src = "${ghcjsBoot}/boot/aeson"; - libraryHaskellDepends = [ - attoparsec base base-compat bytestring containers deepseq dlist - ghc-prim hashable scientific tagged template-haskell text time - time-locale-compat unordered-containers uuid-types vector - ]; - testHaskellDepends = [ - attoparsec base base-compat base-orphans base16-bytestring - bytestring containers directory dlist filepath generic-deriving - ghc-prim hashable hashable-time HUnit integer-logarithms QuickCheck - quickcheck-instances scientific tagged template-haskell - test-framework test-framework-hunit test-framework-quickcheck2 text - time time-locale-compat unordered-containers uuid-types vector - ]; - jailbreak = true; - homepage = https://github.com/bos/aeson; - description = "Fast JSON parsing and encoding"; - license = stdenv.lib.licenses.bsd3; - }) {}; + , base16-bytestring, bytestring, containers, deepseq, directory + , dlist, filepath, generic-deriving, ghc-prim, hashable + , hashable-time, HUnit, integer-logarithms, QuickCheck + , quickcheck-instances, scientific, stdenv, tagged + , template-haskell, test-framework, test-framework-hunit + , test-framework-quickcheck2, text, th-abstraction, time + , time-locale-compat, unordered-containers, uuid-types, vector + }: + mkDerivation { + pname = "aeson"; + version = "1.2.2.0"; + src = "${ghcjsBoot}/boot/aeson"; + doCheck = false; + libraryHaskellDepends = [ + attoparsec base base-compat bytestring containers deepseq dlist + ghc-prim hashable scientific tagged template-haskell text + th-abstraction time time-locale-compat unordered-containers + uuid-types vector + ]; + testHaskellDepends = [ + attoparsec base base-compat base-orphans base16-bytestring + bytestring containers directory dlist filepath generic-deriving + ghc-prim hashable hashable-time HUnit integer-logarithms QuickCheck + quickcheck-instances scientific tagged template-haskell + test-framework test-framework-hunit test-framework-quickcheck2 text + time time-locale-compat unordered-containers uuid-types vector + ]; + jailbreak = true; + homepage = "https://github.com/bos/aeson"; + description = "Fast JSON parsing and encoding"; + license = stdenv.lib.licenses.bsd3; + }) {}; attoparsec = callPackage ({ mkDerivation, array, base, bytestring, case-insensitive - , containers, criterion, deepseq, directory, filepath, ghc-prim - , http-types, parsec, QuickCheck, quickcheck-unicode, scientific - , tasty, tasty-quickcheck, text, transformers, unordered-containers - , vector, stdenv - }: - mkDerivation { - pname = "attoparsec"; - version = "0.13.1.0"; - src = "${ghcjsBoot}/boot/attoparsec"; - libraryHaskellDepends = [ - array base bytestring containers deepseq scientific text - transformers - ]; - testHaskellDepends = [ - array base bytestring deepseq QuickCheck quickcheck-unicode - scientific tasty tasty-quickcheck text transformers vector - ]; - benchmarkHaskellDepends = [ - array base bytestring case-insensitive containers criterion deepseq - directory filepath ghc-prim http-types parsec scientific text - transformers unordered-containers vector - ]; - jailbreak = true; - homepage = https://github.com/bos/attoparsec; - description = "Fast combinator parsing for bytestrings and text"; - license = stdenv.lib.licenses.bsd3; - }) {}; + , containers, criterion, deepseq, directory, filepath, ghc-prim + , http-types, parsec, QuickCheck, quickcheck-unicode, scientific + , stdenv, tasty, tasty-quickcheck, text, transformers + , unordered-containers, vector + }: + mkDerivation { + pname = "attoparsec"; + version = "0.13.1.0"; + src = "${ghcjsBoot}/boot/attoparsec"; + doCheck = false; + libraryHaskellDepends = [ + array base bytestring containers deepseq scientific text + transformers + ]; + testHaskellDepends = [ + array base bytestring deepseq QuickCheck quickcheck-unicode + scientific tasty tasty-quickcheck text transformers vector + ]; + benchmarkHaskellDepends = [ + array base bytestring case-insensitive containers criterion deepseq + directory filepath ghc-prim http-types parsec scientific text + transformers unordered-containers vector + ]; + jailbreak = true; + homepage = "https://github.com/bos/attoparsec"; + description = "Fast combinator parsing for bytestrings and text"; + license = stdenv.lib.licenses.bsd3; + }) {}; + base-compat = callPackage + ({ mkDerivation, base, hspec, QuickCheck, stdenv, unix }: + mkDerivation { + pname = "base-compat"; + version = "0.9.3"; + src = "${ghcjsBoot}/boot/base-compat"; + doCheck = false; + libraryHaskellDepends = [ base unix ]; + testHaskellDepends = [ base hspec QuickCheck ]; + jailbreak = true; + description = "A compatibility layer for base"; + license = stdenv.lib.licenses.mit; + }) {}; + bytestring-builder = callPackage + ({ mkDerivation, base, bytestring, deepseq, stdenv }: + mkDerivation { + pname = "bytestring-builder"; + version = "0.10.8.1.0"; + src = "${ghcjsBoot}/boot/bytestring-builder"; + doCheck = false; + libraryHaskellDepends = [ base bytestring deepseq ]; + jailbreak = true; + description = "The new bytestring builder, packaged outside of GHC"; + license = stdenv.lib.licenses.bsd3; + }) {}; case-insensitive = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, hashable - , HUnit, test-framework, test-framework-hunit, text, stdenv - }: - mkDerivation { - pname = "case-insensitive"; - version = "1.2.0.8"; - src = "${ghcjsBoot}/boot/case-insensitive"; - doCheck = false; - libraryHaskellDepends = [ base bytestring deepseq hashable text ]; - testHaskellDepends = [ - base bytestring HUnit test-framework test-framework-hunit text - ]; - benchmarkHaskellDepends = [ base bytestring criterion deepseq ]; - jailbreak = true; - homepage = https://github.com/basvandijk/case-insensitive; - description = "Case insensitive string comparison"; - license = stdenv.lib.licenses.bsd3; - }) {}; + , HUnit, stdenv, test-framework, test-framework-hunit, text + }: + mkDerivation { + pname = "case-insensitive"; + version = "1.2.0.8"; + src = "${ghcjsBoot}/boot/case-insensitive"; + doCheck = false; + libraryHaskellDepends = [ base bytestring deepseq hashable text ]; + testHaskellDepends = [ + base bytestring HUnit test-framework test-framework-hunit text + ]; + benchmarkHaskellDepends = [ base bytestring criterion deepseq ]; + jailbreak = true; + homepage = "https://github.com/basvandijk/case-insensitive"; + description = "Case insensitive string comparison"; + license = stdenv.lib.licenses.bsd3; + }) {}; dlist = callPackage ({ mkDerivation, base, Cabal, deepseq, QuickCheck, stdenv }: - mkDerivation { - pname = "dlist"; - version = "0.8.0.2"; - src = "${ghcjsBoot}/boot/dlist"; - doCheck = false; - libraryHaskellDepends = [ base deepseq ]; - testHaskellDepends = [ base Cabal QuickCheck ]; - jailbreak = true; - homepage = https://github.com/spl/dlist; - description = "Difference lists"; - license = stdenv.lib.licenses.bsd3; - }) {}; + mkDerivation { + pname = "dlist"; + version = "0.8.0.2"; + src = "${ghcjsBoot}/boot/dlist"; + doCheck = false; + libraryHaskellDepends = [ base deepseq ]; + testHaskellDepends = [ base Cabal QuickCheck ]; + jailbreak = true; + homepage = "https://github.com/spl/dlist"; + description = "Difference lists"; + license = stdenv.lib.licenses.bsd3; + }) {}; extensible-exceptions = callPackage ({ mkDerivation, base, stdenv }: mkDerivation { @@ -125,10 +153,21 @@ description = "Extensible exceptions"; license = stdenv.lib.licenses.bsd3; }) {}; + fail = callPackage + ({ mkDerivation, stdenv }: + mkDerivation { + pname = "fail"; + version = "4.9.0.0"; + src = "${ghcjsBoot}/boot/fail"; + jailbreak = true; + homepage = "https://prime.haskell.org/wiki/Libraries/Proposals/MonadFail"; + description = "Forward-compatible MonadFail class"; + license = stdenv.lib.licenses.bsd3; + }) {}; hashable = callPackage - ({ mkDerivation, base, bytestring, ghc-prim, HUnit, integer-gmp - , QuickCheck, random, stdenv, test-framework, test-framework-hunit - , test-framework-quickcheck2, text, unix + ({ mkDerivation, base, bytestring, criterion, ghc-prim, HUnit + , integer-gmp, QuickCheck, random, siphash, stdenv, test-framework + , test-framework-hunit, test-framework-quickcheck2, text, unix }: mkDerivation { pname = "hashable"; @@ -142,24 +181,58 @@ base bytestring ghc-prim HUnit QuickCheck random test-framework test-framework-hunit test-framework-quickcheck2 text unix ]; + benchmarkHaskellDepends = [ + base bytestring criterion ghc-prim integer-gmp siphash text + ]; jailbreak = true; - homepage = http://github.com/tibbe/hashable; + homepage = "http://github.com/tibbe/hashable"; description = "A class for types that can be converted to a hash value"; license = stdenv.lib.licenses.bsd3; }) {}; + integer-logarithms = callPackage + ({ mkDerivation, array, base, ghc-prim, integer-gmp, QuickCheck + , smallcheck, stdenv, tasty, tasty-hunit, tasty-quickcheck + , tasty-smallcheck + }: + mkDerivation { + pname = "integer-logarithms"; + version = "1.0.2"; + src = "${ghcjsBoot}/boot/integer-logarithms"; + doCheck = false; + libraryHaskellDepends = [ array base ghc-prim integer-gmp ]; + testHaskellDepends = [ + base QuickCheck smallcheck tasty tasty-hunit tasty-quickcheck + tasty-smallcheck + ]; + jailbreak = true; + homepage = "https://github.com/phadej/integer-logarithms"; + description = "Integer logarithms"; + license = stdenv.lib.licenses.mit; + }) {}; mtl = callPackage ({ mkDerivation, base, stdenv, transformers }: mkDerivation { pname = "mtl"; - version = "2.2.2"; + version = "2.2.1"; src = "${ghcjsBoot}/boot/mtl"; doCheck = false; libraryHaskellDepends = [ base transformers ]; jailbreak = true; - homepage = http://github.com/ekmett/mtl; + homepage = "http://github.com/ekmett/mtl"; description = "Monad classes, using functional dependencies"; license = stdenv.lib.licenses.bsd3; }) {}; + nats = callPackage + ({ mkDerivation, stdenv }: + mkDerivation { + pname = "nats"; + version = "1.1.1"; + src = "${ghcjsBoot}/boot/nats"; + jailbreak = true; + homepage = "http://github.com/ekmett/nats/"; + description = "Natural numbers"; + license = stdenv.lib.licenses.bsd3; + }) {}; old-time = callPackage ({ mkDerivation, base, old-locale, stdenv }: mkDerivation { @@ -184,30 +257,57 @@ description = "Parallel programming library"; license = stdenv.lib.licenses.bsd3; }) {}; + random = callPackage + ({ mkDerivation, base, stdenv, time }: + mkDerivation { + pname = "random"; + version = "1.1"; + src = "${ghcjsBoot}/boot/random"; + doCheck = false; + libraryHaskellDepends = [ base time ]; + testHaskellDepends = [ base ]; + jailbreak = true; + description = "random number library"; + license = stdenv.lib.licenses.bsd3; + }) {}; scientific = callPackage ({ mkDerivation, base, binary, bytestring, containers, criterion - , deepseq, ghc-prim, hashable, integer-gmp, integer-logarithms - , QuickCheck, smallcheck, tasty, tasty-ant-xml, tasty-hunit - , tasty-quickcheck, tasty-smallcheck, text, vector, stdenv - }: - mkDerivation { - pname = "scientific"; - version = "0.3.4.10"; - src = "${ghcjsBoot}/boot/scientific"; - libraryHaskellDepends = [ - base binary bytestring containers deepseq ghc-prim hashable - integer-gmp integer-logarithms text vector - ]; - testHaskellDepends = [ - base binary bytestring QuickCheck smallcheck tasty tasty-ant-xml - tasty-hunit tasty-quickcheck tasty-smallcheck text - ]; - benchmarkHaskellDepends = [ base criterion ]; - jailbreak = true; - homepage = https://github.com/basvandijk/scientific; - description = "Numbers represented using scientific notation"; - license = stdenv.lib.licenses.bsd3; - }) {}; + , deepseq, ghc-prim, hashable, integer-gmp, integer-logarithms + , QuickCheck, smallcheck, stdenv, tasty, tasty-ant-xml, tasty-hunit + , tasty-quickcheck, tasty-smallcheck, text, vector + }: + mkDerivation { + pname = "scientific"; + version = "0.3.4.10"; + src = "${ghcjsBoot}/boot/scientific"; + doCheck = false; + libraryHaskellDepends = [ + base binary bytestring containers deepseq ghc-prim hashable + integer-gmp integer-logarithms text vector + ]; + testHaskellDepends = [ + base binary bytestring QuickCheck smallcheck tasty tasty-ant-xml + tasty-hunit tasty-quickcheck tasty-smallcheck text + ]; + benchmarkHaskellDepends = [ base criterion ]; + jailbreak = true; + homepage = "https://github.com/basvandijk/scientific"; + description = "Numbers represented using scientific notation"; + license = stdenv.lib.licenses.bsd3; + }) {}; + semigroups = callPackage + ({ mkDerivation, base, stdenv }: + mkDerivation { + pname = "semigroups"; + version = "0.18.3"; + src = "${ghcjsBoot}/boot/semigroups"; + doCheck = false; + libraryHaskellDepends = [ base ]; + jailbreak = true; + homepage = "http://github.com/ekmett/semigroups/"; + description = "Anything that associates"; + license = stdenv.lib.licenses.bsd3; + }) {}; stm = callPackage ({ mkDerivation, array, base, stdenv }: mkDerivation { @@ -230,27 +330,27 @@ libraryHaskellDepends = [ base ]; testHaskellDepends = [ base containers HUnit mtl ]; jailbreak = true; - homepage = http://www.cs.uu.nl/wiki/GenericProgramming/SYB; + homepage = "http://www.cs.uu.nl/wiki/GenericProgramming/SYB"; description = "Scrap Your Boilerplate"; license = stdenv.lib.licenses.bsd3; }) {}; tagged = callPackage - ({ mkDerivation, base, deepseq, template-haskell, transformers - , transformers-compat, stdenv - }: - mkDerivation { - pname = "tagged"; - version = "0.8.5"; - src = "${ghcjsBoot}/boot/tagged"; - doCheck = false; - libraryHaskellDepends = [ - base deepseq template-haskell transformers transformers-compat - ]; - jailbreak = true; - homepage = http://github.com/ekmett/tagged; - description = "Haskell 98 phantom types to avoid unsafely passing dummy arguments"; - license = stdenv.lib.licenses.bsd3; - }) {}; + ({ mkDerivation, base, deepseq, stdenv, template-haskell + , transformers, transformers-compat + }: + mkDerivation { + pname = "tagged"; + version = "0.8.5"; + src = "${ghcjsBoot}/boot/tagged"; + doCheck = false; + libraryHaskellDepends = [ + base deepseq template-haskell transformers transformers-compat + ]; + jailbreak = true; + homepage = "http://github.com/ekmett/tagged"; + description = "Haskell 98 phantom types to avoid unsafely passing dummy arguments"; + license = stdenv.lib.licenses.bsd3; + }) {}; text = callPackage ({ mkDerivation, array, base, binary, bytestring, deepseq, directory , ghc-prim, HUnit, integer-gmp, QuickCheck, quickcheck-unicode @@ -271,57 +371,104 @@ test-framework-hunit test-framework-quickcheck2 ]; jailbreak = true; - homepage = https://github.com/bos/text; + homepage = "https://github.com/bos/text"; description = "An efficient packed Unicode text type"; license = stdenv.lib.licenses.bsd3; }) {}; + th-abstraction = callPackage + ({ mkDerivation, base, containers, ghc-prim, stdenv + , template-haskell + }: + mkDerivation { + pname = "th-abstraction"; + version = "0.2.6.0"; + src = "${ghcjsBoot}/boot/th-abstraction"; + doCheck = false; + libraryHaskellDepends = [ + base containers ghc-prim template-haskell + ]; + testHaskellDepends = [ base containers template-haskell ]; + jailbreak = true; + homepage = "https://github.com/glguy/th-abstraction"; + description = "Nicer interface for reified information about data types"; + license = stdenv.lib.licenses.isc; + }) {}; + time-locale-compat = callPackage + ({ mkDerivation, base, old-locale, stdenv, time }: + mkDerivation { + pname = "time-locale-compat"; + version = "0.1.1.3"; + src = "${ghcjsBoot}/boot/time-locale-compat"; + doCheck = false; + libraryHaskellDepends = [ base old-locale time ]; + jailbreak = true; + homepage = "https://github.com/khibino/haskell-time-locale-compat"; + description = "Compatibility of TimeLocale between old-locale and time-1.5"; + license = stdenv.lib.licenses.bsd3; + }) {}; + transformers-compat = callPackage + ({ mkDerivation, base, ghc-prim, stdenv, transformers }: + mkDerivation { + pname = "transformers-compat"; + version = "0.5.1.4"; + src = "${ghcjsBoot}/boot/transformers-compat"; + doCheck = false; + libraryHaskellDepends = [ base ghc-prim transformers ]; + jailbreak = true; + homepage = "http://github.com/ekmett/transformers-compat/"; + description = "A small compatibility shim exposing the new types from transformers 0.3 and 0.4 to older Haskell platforms."; + license = stdenv.lib.licenses.bsd3; + }) {}; unordered-containers = callPackage ({ mkDerivation, base, bytestring, ChasingBottoms, containers - , criterion, deepseq, deepseq-generics, hashable, hashmap, HUnit - , mtl, QuickCheck, random, test-framework, test-framework-hunit - , test-framework-quickcheck2, stdenv - }: - mkDerivation { - pname = "unordered-containers"; - version = "0.2.7.2"; - src = "${ghcjsBoot}/boot/unordered-containers"; - libraryHaskellDepends = [ base deepseq hashable ]; - testHaskellDepends = [ - base ChasingBottoms containers hashable HUnit QuickCheck - test-framework test-framework-hunit test-framework-quickcheck2 - ]; - benchmarkHaskellDepends = [ - base bytestring containers criterion deepseq deepseq-generics - hashable hashmap mtl random - ]; - jailbreak = true; - homepage = https://github.com/tibbe/unordered-containers; - description = "Efficient hashing-based container types"; - license = stdenv.lib.licenses.bsd3; - }) {}; + , criterion, deepseq, deepseq-generics, hashable, hashmap, HUnit + , mtl, QuickCheck, random, stdenv, test-framework + , test-framework-hunit, test-framework-quickcheck2 + }: + mkDerivation { + pname = "unordered-containers"; + version = "0.2.7.2"; + src = "${ghcjsBoot}/boot/unordered-containers"; + doCheck = false; + libraryHaskellDepends = [ base deepseq hashable ]; + testHaskellDepends = [ + base ChasingBottoms containers hashable HUnit QuickCheck + test-framework test-framework-hunit test-framework-quickcheck2 + ]; + benchmarkHaskellDepends = [ + base bytestring containers criterion deepseq deepseq-generics + hashable hashmap mtl random + ]; + jailbreak = true; + homepage = "https://github.com/tibbe/unordered-containers"; + description = "Efficient hashing-based container types"; + license = stdenv.lib.licenses.bsd3; + }) {}; uuid-types = callPackage ({ mkDerivation, base, binary, bytestring, containers, criterion - , deepseq, hashable, HUnit, QuickCheck, random, stdenv, tasty - , tasty-hunit, tasty-quickcheck, text - }: - mkDerivation { - pname = "uuid-types"; - version = "1.0.3"; - src = "${ghcjsBoot}/boot/uuid/uuid-types"; - libraryHaskellDepends = [ - base binary bytestring deepseq hashable random text - ]; - testHaskellDepends = [ - base bytestring HUnit QuickCheck tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base bytestring containers criterion deepseq random - ]; - jailbreak = true; - homepage = https://github.com/aslatter/uuid; - description = "Type definitions for Universally Unique Identifiers"; - license = stdenv.lib.licenses.bsd3; - }) {}; + , deepseq, hashable, HUnit, QuickCheck, random, stdenv, tasty + , tasty-hunit, tasty-quickcheck, text, unordered-containers + }: + mkDerivation { + pname = "uuid-types"; + version = "1.0.3"; + src = "${ghcjsBoot}/boot/uuid/uuid-types"; + doCheck = false; + libraryHaskellDepends = [ + base binary bytestring deepseq hashable random text + ]; + testHaskellDepends = [ + base bytestring HUnit QuickCheck tasty tasty-hunit tasty-quickcheck + ]; + benchmarkHaskellDepends = [ + base bytestring containers criterion deepseq random + unordered-containers + ]; + jailbreak = true; + homepage = "https://github.com/hvr/uuid"; + description = "Type definitions for Universally Unique Identifiers"; + license = stdenv.lib.licenses.bsd3; + }) {}; vector = callPackage ({ mkDerivation, base, deepseq, ghc-prim, primitive, QuickCheck , random, stdenv, template-haskell, test-framework @@ -338,7 +485,7 @@ test-framework-quickcheck2 transformers ]; jailbreak = true; - homepage = https://github.com/haskell/vector; + homepage = "https://github.com/haskell/vector"; description = "Efficient Arrays"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -366,16 +513,15 @@ test-framework-hunit test-framework-quickcheck2 text ]; jailbreak = true; - homepage = http://github.com/ghcjs/ghcjs-base; - description = "Base library for GHCJS"; + homepage = "http://github.com/ghcjs/ghcjs-base"; + description = "base library for GHCJS"; license = stdenv.lib.licenses.mit; }) {}; Cabal = callPackage ({ mkDerivation, array, base, binary, bytestring, containers - , deepseq, directory, extensible-exceptions, filepath, HUnit - , old-time, pretty, process, QuickCheck, regex-posix, stdenv - , test-framework, test-framework-hunit, test-framework-quickcheck2 - , time, unix + , deepseq, directory, exceptions, filepath, old-time, pretty + , process, QuickCheck, regex-posix, stdenv, tagged, tasty + , tasty-hunit, tasty-quickcheck, time, transformers, unix }: mkDerivation { pname = "Cabal"; @@ -387,12 +533,12 @@ pretty process time unix ]; testHaskellDepends = [ - base bytestring containers directory extensible-exceptions filepath - HUnit old-time process QuickCheck regex-posix test-framework - test-framework-hunit test-framework-quickcheck2 unix + base bytestring containers directory exceptions filepath old-time + pretty process QuickCheck regex-posix tagged tasty tasty-hunit + tasty-quickcheck transformers unix ]; jailbreak = true; - homepage = http://www.haskell.org/cabal/; + homepage = "http://www.haskell.org/cabal/"; description = "A framework for packaging Haskell software"; license = stdenv.lib.licenses.bsd3; }) {}; diff --git a/pkgs/development/compilers/go/1.8.nix b/pkgs/development/compilers/go/1.8.nix index 8a675b1b7761..838032c96984 100644 --- a/pkgs/development/compilers/go/1.8.nix +++ b/pkgs/development/compilers/go/1.8.nix @@ -25,13 +25,13 @@ in stdenv.mkDerivation rec { name = "go-${version}"; - version = "1.8.3"; + version = "1.8.4"; src = fetchFromGitHub { owner = "golang"; repo = "go"; rev = "go${version}"; - sha256 = "0g83xm9gb872rsqzwqr1zw5szq69xhynljj2nglg4yyfi7dm2r1c"; + sha256 = "0p0m63y39pja3fkj43sdq0qv8kqljkz7d58bf9jbw0rjw2c9ml4a"; }; # perl is used for testing go vet diff --git a/pkgs/development/compilers/go/1.9.nix b/pkgs/development/compilers/go/1.9.nix index c5d44af2b5ba..a90985c2525a 100644 --- a/pkgs/development/compilers/go/1.9.nix +++ b/pkgs/development/compilers/go/1.9.nix @@ -25,13 +25,13 @@ in stdenv.mkDerivation rec { name = "go-${version}"; - version = "1.9"; + version = "1.9.1"; src = fetchFromGitHub { owner = "golang"; repo = "go"; rev = "go${version}"; - sha256 = "06k66x387r93m7d3bd5yzwdm8f8xc43cdjfamqldfc1v8ngak0y9"; + sha256 = "1p226lgsmiwgcvmiakac9i08304cq5ick23vmsk1vjcsh6dvz9i3"; }; # perl is used for testing go vet @@ -118,6 +118,15 @@ stdenv.mkDerivation rec { ./ssl-cert-file-1.9.patch ./creds-test.patch ./remove-test-pie-1.9.patch + + (fetchpatch { + url = "https://github.com/golang/go/commit/29415eb2b92e78481897c4161ba99f5b09fa6102.patch"; + sha256 = "01jkm4b2dazzjnfla7rdd0w2clzplga3zza6ybpmkjkk3i4bp73d"; + }) + (fetchpatch { + url = "https://github.com/golang/go/commit/27e80f7c4d8001598367e15a1617fa524bd0fb11.patch"; + sha256 = "1250nrc79jwcagkjqffn5srn78isykvjhvmqhwipwyqb99q85wcz"; + }) ]; postPatch = optionalString stdenv.isDarwin '' @@ -132,6 +141,7 @@ stdenv.mkDerivation rec { else if stdenv.system == "i686-linux" then "386" else if stdenv.system == "x86_64-linux" then "amd64" else if stdenv.isArm then "arm" + else if stdenv.isAarch64 then "arm64" else throw "Unsupported system"; GOARM = optionalString (stdenv.system == "armv5tel-linux") "5"; GO386 = 387; # from Arch: don't assume sse2 on i686 @@ -171,11 +181,11 @@ stdenv.mkDerivation rec { disallowedReferences = [ go_bootstrap ]; meta = with stdenv.lib; { - branch = "1.8"; + branch = "1.9"; homepage = http://golang.org/; description = "The Go Programming language"; license = licenses.bsd3; - maintainers = with maintainers; [ cstrahan wkennington ]; + maintainers = with maintainers; [ cstrahan orivej wkennington ]; platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/compilers/kotlin/default.nix b/pkgs/development/compilers/kotlin/default.nix index 65c2125dfbca..37093530a3ca 100644 --- a/pkgs/development/compilers/kotlin/default.nix +++ b/pkgs/development/compilers/kotlin/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, makeWrapper, jre, unzip }: stdenv.mkDerivation rec { - version = "1.1.4-2"; + version = "1.1.51"; name = "kotlin-${version}"; src = fetchurl { url = "https://github.com/JetBrains/kotlin/releases/download/v${version}/kotlin-compiler-${version}.zip"; - sha256 = "09sikwk5xxn4b30icbq28mjs4lm9xbj0bv5yjx75r165iz65g2cv"; + sha256 = "1kbwyldfyyd20rnrl5yvyvqiqj9b3v6543vhlqsh5swhhc9nnd0b"; }; propagatedBuildInputs = [ jre ] ; diff --git a/pkgs/development/compilers/llvm/4/default.nix b/pkgs/development/compilers/llvm/4/default.nix index c1d1ce055d76..25bb008567f7 100644 --- a/pkgs/development/compilers/llvm/4/default.nix +++ b/pkgs/development/compilers/llvm/4/default.nix @@ -10,7 +10,7 @@ let version = release_version; # differentiating these is important for rc's fetch = name: sha256: fetchurl { - url = "http://llvm.org/releases/${release_version}/${name}-${version}.src.tar.xz"; + url = "https://releases.llvm.org/${release_version}/${name}-${version}.src.tar.xz"; inherit sha256; }; diff --git a/pkgs/development/compilers/llvm/5/clang/default.nix b/pkgs/development/compilers/llvm/5/clang/default.nix new file mode 100644 index 000000000000..fa8502ebd67a --- /dev/null +++ b/pkgs/development/compilers/llvm/5/clang/default.nix @@ -0,0 +1,97 @@ +{ stdenv, fetch, cmake, libxml2, libedit, llvm, version, release_version, clang-tools-extra_src, python +, fixDarwinDylibNames +, enableManpages ? false +}: + +let + gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc; + self = stdenv.mkDerivation { + name = "clang-${version}"; + + unpackPhase = '' + unpackFile ${fetch "cfe" "0w09s8fn3lkn6i04nj0cisgp821r815fk5b5fjn97xrd371277q1"} + mv cfe-${version}* clang + sourceRoot=$PWD/clang + unpackFile ${clang-tools-extra_src} + mv clang-tools-extra-* $sourceRoot/tools/extra + ''; + + nativeBuildInputs = [ cmake python ] + ++ stdenv.lib.optional enableManpages python.pkgs.sphinx; + + buildInputs = [ libedit libxml2 llvm ] + ++ stdenv.lib.optional stdenv.isDarwin fixDarwinDylibNames; + + cmakeFlags = [ + "-DCMAKE_CXX_FLAGS=-std=c++11" + ] ++ stdenv.lib.optionals enableManpages [ + "-DCLANG_INCLUDE_DOCS=ON" + "-DLLVM_ENABLE_SPHINX=ON" + "-DSPHINX_OUTPUT_MAN=ON" + "-DSPHINX_OUTPUT_HTML=OFF" + "-DSPHINX_WARNINGS_AS_ERRORS=OFF" + ] + # Maybe with compiler-rt this won't be needed? + ++ stdenv.lib.optional stdenv.isLinux "-DGCC_INSTALL_PREFIX=${gcc}" + ++ stdenv.lib.optional (stdenv.cc.libc != null) "-DC_INCLUDE_DIRS=${stdenv.cc.libc}/include"; + + patches = [ ./purity.patch ]; + + postBuild = stdenv.lib.optionalString enableManpages '' + cmake --build . --target docs-clang-man + ''; + + postPatch = '' + sed -i -e 's/DriverArgs.hasArg(options::OPT_nostdlibinc)/true/' \ + -e 's/Args.hasArg(options::OPT_nostdlibinc)/true/' \ + lib/Driver/ToolChains/*.cpp + + # Patch for standalone doc building + sed -i '1s,^,find_package(Sphinx REQUIRED)\n,' docs/CMakeLists.txt + ''; + + outputs = [ "out" "python" ] + ++ stdenv.lib.optional enableManpages "man"; + + # Clang expects to find LLVMgold in its own prefix + # Clang expects to find sanitizer libraries in its own prefix + postInstall = '' + ln -sv ${llvm}/lib/LLVMgold.so $out/lib + ln -sv ${llvm}/lib/clang/${release_version}/lib $out/lib/clang/${release_version}/ + ln -sv $out/bin/clang $out/bin/cpp + + mkdir -p $python/bin $python/share/clang/ + mv $out/bin/{git-clang-format,scan-view} $python/bin + if [ -e $out/bin/set-xcode-analyzer ]; then + mv $out/bin/set-xcode-analyzer $python/bin + fi + mv $out/share/clang/*.py $python/share/clang + + rm $out/bin/c-index-test + '' + + stdenv.lib.optionalString enableManpages '' + # Manually install clang manpage + cp docs/man/*.1 $out/share/man/man1/ + + # Move it and other man pages to 'man' output + moveToOutput "share/man" "$man" + ''; + + enableParallelBuilding = true; + + passthru = { + lib = self; # compatibility with gcc, so that `stdenv.cc.cc.lib` works on both + isClang = true; + inherit llvm; + } // stdenv.lib.optionalAttrs stdenv.isLinux { + inherit gcc; + }; + + meta = { + description = "A c, c++, objective-c, and objective-c++ frontend for the llvm compiler"; + homepage = http://llvm.org/; + license = stdenv.lib.licenses.ncsa; + platforms = stdenv.lib.platforms.all; + }; + }; +in self diff --git a/pkgs/development/compilers/llvm/5/clang/purity.patch b/pkgs/development/compilers/llvm/5/clang/purity.patch new file mode 100644 index 000000000000..b30d0d0b5d5b --- /dev/null +++ b/pkgs/development/compilers/llvm/5/clang/purity.patch @@ -0,0 +1,30 @@ +From 4add81bba40dcec62c4ea4481be8e35ac53e89d8 Mon Sep 17 00:00:00 2001 +From: Will Dietz <w@wdtz.org> +Date: Thu, 18 May 2017 11:56:12 -0500 +Subject: [PATCH] "purity" patch for 5.0 + +--- + lib/Driver/ToolChains/Gnu.cpp | 7 ------- + 1 file changed, 7 deletions(-) + +diff --git a/lib/Driver/ToolChains/Gnu.cpp b/lib/Driver/ToolChains/Gnu.cpp +index fe3c0191bb..c6a482bece 100644 +--- a/lib/Driver/ToolChains/Gnu.cpp ++++ b/lib/Driver/ToolChains/Gnu.cpp +@@ -494,13 +494,6 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA, + if (!Args.hasArg(options::OPT_static)) { + if (Args.hasArg(options::OPT_rdynamic)) + CmdArgs.push_back("-export-dynamic"); +- +- if (!Args.hasArg(options::OPT_shared)) { +- const std::string Loader = +- D.DyldPrefix + ToolChain.getDynamicLinker(Args); +- CmdArgs.push_back("-dynamic-linker"); +- CmdArgs.push_back(Args.MakeArgString(Loader)); +- } + } + + CmdArgs.push_back("-o"); +-- +2.11.0 + diff --git a/pkgs/development/compilers/llvm/5/compiler-rt-codesign.patch b/pkgs/development/compilers/llvm/5/compiler-rt-codesign.patch new file mode 100644 index 000000000000..8f4c76bca1eb --- /dev/null +++ b/pkgs/development/compilers/llvm/5/compiler-rt-codesign.patch @@ -0,0 +1,155 @@ +From 3dec5f3475a26aeb4678627795c4b67c6b7b4785 Mon Sep 17 00:00:00 2001 +From: Will Dietz <w@wdtz.org> +Date: Tue, 19 Sep 2017 13:13:06 -0500 +Subject: [PATCH] remove codesign use on Apple, disable ios sim testing that + needs it + +--- + cmake/Modules/AddCompilerRT.cmake | 8 ------ + test/asan/CMakeLists.txt | 52 --------------------------------------- + test/tsan/CMakeLists.txt | 47 ----------------------------------- + 3 files changed, 107 deletions(-) + +diff --git a/cmake/Modules/AddCompilerRT.cmake b/cmake/Modules/AddCompilerRT.cmake +index bc5fb9ff7..b64eb4246 100644 +--- a/cmake/Modules/AddCompilerRT.cmake ++++ b/cmake/Modules/AddCompilerRT.cmake +@@ -210,14 +210,6 @@ function(add_compiler_rt_runtime name type) + set_target_properties(${libname} PROPERTIES IMPORT_PREFIX "") + set_target_properties(${libname} PROPERTIES IMPORT_SUFFIX ".lib") + endif() +- if(APPLE) +- # Ad-hoc sign the dylibs +- add_custom_command(TARGET ${libname} +- POST_BUILD +- COMMAND codesign --sign - $<TARGET_FILE:${libname}> +- WORKING_DIRECTORY ${COMPILER_RT_LIBRARY_OUTPUT_DIR} +- ) +- endif() + endif() + install(TARGETS ${libname} + ARCHIVE DESTINATION ${COMPILER_RT_LIBRARY_INSTALL_DIR} +diff --git a/test/asan/CMakeLists.txt b/test/asan/CMakeLists.txt +index 8bfc15b5c..f23d0f71a 100644 +--- a/test/asan/CMakeLists.txt ++++ b/test/asan/CMakeLists.txt +@@ -83,58 +83,6 @@ foreach(arch ${ASAN_TEST_ARCH}) + endif() + endforeach() + +-# iOS and iOS simulator test suites +-# These are not added into "check-all", in order to run these tests, use +-# "check-asan-iossim-x86_64" and similar. They also require that an extra env +-# variable to select which iOS device or simulator to use, e.g.: +-# SANITIZER_IOSSIM_TEST_DEVICE_IDENTIFIER="iPhone 6" +-if(APPLE) +- set(EXCLUDE_FROM_ALL ON) +- +- set(ASAN_TEST_TARGET_CC ${COMPILER_RT_TEST_COMPILER}) +- set(ASAN_TEST_IOS "1") +- pythonize_bool(ASAN_TEST_IOS) +- set(ASAN_TEST_DYNAMIC True) +- +- foreach(arch ${DARWIN_iossim_ARCHS}) +- set(ASAN_TEST_IOSSIM "1") +- pythonize_bool(ASAN_TEST_IOSSIM) +- set(ASAN_TEST_TARGET_ARCH ${arch}) +- set(ASAN_TEST_TARGET_CFLAGS "-arch ${arch} -isysroot ${DARWIN_iossim_SYSROOT} ${COMPILER_RT_TEST_COMPILER_CFLAGS}") +- set(ASAN_TEST_CONFIG_SUFFIX "-${arch}-iossim") +- get_bits_for_arch(${arch} ASAN_TEST_BITS) +- string(TOUPPER ${arch} ARCH_UPPER_CASE) +- set(CONFIG_NAME "IOSSim${ARCH_UPPER_CASE}Config") +- configure_lit_site_cfg( +- ${CMAKE_CURRENT_SOURCE_DIR}/lit.site.cfg.in +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/lit.site.cfg +- ) +- add_lit_testsuite(check-asan-iossim-${arch} "AddressSanitizer iOS Simulator ${arch} tests" +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/ +- DEPENDS ${ASAN_TEST_DEPS}) +- endforeach() +- +- foreach (arch ${DARWIN_ios_ARCHS}) +- set(ASAN_TEST_IOSSIM "0") +- pythonize_bool(ASAN_TEST_IOSSIM) +- set(ASAN_TEST_TARGET_ARCH ${arch}) +- set(ASAN_TEST_TARGET_CFLAGS "-arch ${arch} -isysroot ${DARWIN_ios_SYSROOT} ${COMPILER_RT_TEST_COMPILER_CFLAGS}") +- set(ASAN_TEST_CONFIG_SUFFIX "-${arch}-ios") +- get_bits_for_arch(${arch} ASAN_TEST_BITS) +- string(TOUPPER ${arch} ARCH_UPPER_CASE) +- set(CONFIG_NAME "IOS${ARCH_UPPER_CASE}Config") +- configure_lit_site_cfg( +- ${CMAKE_CURRENT_SOURCE_DIR}/lit.site.cfg.in +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/lit.site.cfg +- ) +- add_lit_testsuite(check-asan-ios-${arch} "AddressSanitizer iOS ${arch} tests" +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/ +- DEPENDS ${ASAN_TEST_DEPS}) +- endforeach() +- +- set(EXCLUDE_FROM_ALL OFF) +-endif() +- + # Add unit tests. + if(COMPILER_RT_INCLUDE_TESTS) + set(ASAN_TEST_DYNAMIC False) +diff --git a/test/tsan/CMakeLists.txt b/test/tsan/CMakeLists.txt +index a68908612..cde0accb5 100644 +--- a/test/tsan/CMakeLists.txt ++++ b/test/tsan/CMakeLists.txt +@@ -42,53 +42,6 @@ foreach(arch ${TSAN_TEST_ARCH}) + list(APPEND TSAN_TESTSUITES ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}) + endforeach() + +-# iOS and iOS simulator test suites +-# These are not added into "check-all", in order to run these tests, use +-# "check-tsan-iossim-x86_64" and similar. They also require an extra environment +-# variable to select which iOS device or simulator to use, e.g.: +-# SANITIZER_IOSSIM_TEST_DEVICE_IDENTIFIER="iPhone 6" +-if(APPLE) +- set(EXCLUDE_FROM_ALL ON) +- +- set(TSAN_TEST_TARGET_CC ${COMPILER_RT_TEST_COMPILER}) +- set(TSAN_TEST_IOS "1") +- pythonize_bool(TSAN_TEST_IOS) +- +- set(arch "x86_64") +- set(TSAN_TEST_IOSSIM "1") +- pythonize_bool(TSAN_TEST_IOSSIM) +- set(TSAN_TEST_TARGET_ARCH ${arch}) +- set(TSAN_TEST_TARGET_CFLAGS "-arch ${arch} -isysroot ${DARWIN_iossim_SYSROOT} ${COMPILER_RT_TEST_COMPILER_CFLAGS}") +- set(TSAN_TEST_CONFIG_SUFFIX "-${arch}-iossim") +- string(TOUPPER ${arch} ARCH_UPPER_CASE) +- set(CONFIG_NAME "IOSSim${ARCH_UPPER_CASE}Config") +- configure_lit_site_cfg( +- ${CMAKE_CURRENT_SOURCE_DIR}/lit.site.cfg.in +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/lit.site.cfg +- ) +- add_lit_testsuite(check-tsan-iossim-${arch} "ThreadSanitizer iOS Simulator ${arch} tests" +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/ +- DEPENDS ${TSAN_TEST_DEPS}) +- +- set(arch "arm64") +- set(TSAN_TEST_IOSSIM "0") +- pythonize_bool(TSAN_TEST_IOSSIM) +- set(TSAN_TEST_TARGET_ARCH ${arch}) +- set(TSAN_TEST_TARGET_CFLAGS "-arch ${arch} -isysroot ${DARWIN_ios_SYSROOT} ${COMPILER_RT_TEST_COMPILER_CFLAGS}") +- set(TSAN_TEST_CONFIG_SUFFIX "-${arch}-ios") +- string(TOUPPER ${arch} ARCH_UPPER_CASE) +- set(CONFIG_NAME "IOS${ARCH_UPPER_CASE}Config") +- configure_lit_site_cfg( +- ${CMAKE_CURRENT_SOURCE_DIR}/lit.site.cfg.in +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/lit.site.cfg +- ) +- add_lit_testsuite(check-tsan-ios-${arch} "ThreadSanitizer iOS Simulator ${arch} tests" +- ${CMAKE_CURRENT_BINARY_DIR}/${CONFIG_NAME}/ +- DEPENDS ${TSAN_TEST_DEPS}) +- +- set(EXCLUDE_FROM_ALL OFF) +-endif() +- + if(COMPILER_RT_INCLUDE_TESTS) + configure_lit_site_cfg( + ${CMAKE_CURRENT_SOURCE_DIR}/Unit/lit.site.cfg.in +-- +2.14.1 + diff --git a/pkgs/development/compilers/llvm/5/default.nix b/pkgs/development/compilers/llvm/5/default.nix new file mode 100644 index 000000000000..1d5cc0e504b7 --- /dev/null +++ b/pkgs/development/compilers/llvm/5/default.nix @@ -0,0 +1,81 @@ +{ lowPrio, newScope, stdenv, targetPlatform, cmake, libstdcxxHook +, libxml2, python2, isl, fetchurl, overrideCC, wrapCC, ccWrapperFun +, darwin +}: + +let + callPackage = newScope (self // { inherit stdenv cmake libxml2 python2 isl release_version version fetch; }); + + release_version = "5.0.0"; + version = release_version; # differentiating these is important for rc's + + fetch = name: sha256: fetchurl { + url = "http://llvm.org/releases/${release_version}/${name}-${version}.src.tar.xz"; + inherit sha256; + }; + + compiler-rt_src = fetch "compiler-rt" "1cy0y389zxn7mk8vffqvfirk9bbcbc8ziwc1nf1a8d118rk55bfm"; + clang-tools-extra_src = fetch "clang-tools-extra" "1ikkv6k8cfgpjqlm24iqz52i5nyafzsc4dyikzzyb9n4b6wpil47"; + + # Add man output without introducing extra dependencies. + overrideManOutput = drv: + let drv-manpages = drv.override { enableManpages = true; }; in + drv // { man = drv-manpages.man; /*outputs = drv.outputs ++ ["man"];*/ }; + + llvm = callPackage ./llvm.nix { + inherit compiler-rt_src stdenv; + }; + + clang-unwrapped = callPackage ./clang { + inherit clang-tools-extra_src stdenv; + }; + + self = { + llvm = overrideManOutput llvm; + clang-unwrapped = overrideManOutput clang-unwrapped; + + llvm-manpages = lowPrio self.llvm.man; + clang-manpages = lowPrio self.clang-unwrapped.man; + + clang = if stdenv.cc.isGNU then self.libstdcxxClang else self.libcxxClang; + + libstdcxxClang = ccWrapperFun { + cc = self.clang-unwrapped; + /* FIXME is this right? */ + inherit (stdenv.cc) libc nativeTools nativeLibc; + extraPackages = [ libstdcxxHook ]; + }; + + libcxxClang = ccWrapperFun { + cc = self.clang-unwrapped; + /* FIXME is this right? */ + inherit (stdenv.cc) libc nativeTools nativeLibc; + extraPackages = [ self.libcxx self.libcxxabi ]; + }; + + stdenv = stdenv.override (drv: { + allowedRequisites = null; + cc = self.clang; + # Don't include the libc++ and libc++abi from the original stdenv. + extraBuildInputs = stdenv.lib.optional stdenv.isDarwin darwin.CF; + }); + + libcxxStdenv = stdenv.override (drv: { + allowedRequisites = null; + cc = self.libcxxClang; + # Don't include the libc++ and libc++abi from the original stdenv. + extraBuildInputs = stdenv.lib.optional stdenv.isDarwin darwin.CF; + }); + + lld = callPackage ./lld.nix {}; + + lldb = callPackage ./lldb.nix {}; + + libcxx = callPackage ./libc++ {}; + + libcxxabi = callPackage ./libc++abi.nix {}; + + openmp = callPackage ./openmp.nix {}; + }; + +in self diff --git a/pkgs/development/compilers/llvm/5/libc++/default.nix b/pkgs/development/compilers/llvm/5/libc++/default.nix new file mode 100644 index 000000000000..036161f7b889 --- /dev/null +++ b/pkgs/development/compilers/llvm/5/libc++/default.nix @@ -0,0 +1,44 @@ +{ lib, stdenv, fetch, cmake, llvm, libcxxabi, fixDarwinDylibNames, version }: + +stdenv.mkDerivation rec { + name = "libc++-${version}"; + + src = fetch "libcxx" "1cf953msb0vwgjjrapw06950dnsdb2ps305czkn0vvr1k8g9irga"; + + postUnpack = '' + unpackFile ${libcxxabi.src} + export LIBCXXABI_INCLUDE_DIR="$PWD/$(ls -d libcxxabi-${version}*)/include" + ''; + + prePatch = '' + substituteInPlace lib/CMakeLists.txt --replace "/usr/lib/libc++" "\''${LIBCXX_LIBCXXABI_LIB_PATH}/libc++" + ''; + + preConfigure = '' + # Get headers from the cxxabi source so we can see private headers not installed by the cxxabi package + cmakeFlagsArray=($cmakeFlagsArray -DLIBCXX_CXX_ABI_INCLUDE_PATHS="$LIBCXXABI_INCLUDE_DIR") + ''; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ libcxxabi ] ++ lib.optional stdenv.isDarwin fixDarwinDylibNames; + + cmakeFlags = [ + "-DLIBCXX_LIBCXXABI_LIB_PATH=${libcxxabi}/lib" + "-DLIBCXX_LIBCPPABI_VERSION=2" + "-DLIBCXX_CXX_ABI=libcxxabi" + ]; + + enableParallelBuilding = true; + + linkCxxAbi = stdenv.isLinux; + + setupHook = ./setup-hook.sh; + + meta = { + homepage = http://libcxx.llvm.org/; + description = "A new implementation of the C++ standard library, targeting C++11"; + license = with stdenv.lib.licenses; [ ncsa mit ]; + platforms = stdenv.lib.platforms.unix; + }; +} diff --git a/pkgs/development/compilers/llvm/5/libc++/setup-hook.sh b/pkgs/development/compilers/llvm/5/libc++/setup-hook.sh new file mode 100644 index 000000000000..9022fced6ecf --- /dev/null +++ b/pkgs/development/compilers/llvm/5/libc++/setup-hook.sh @@ -0,0 +1,3 @@ +linkCxxAbi="@linkCxxAbi@" +export NIX_CXXSTDLIB_COMPILE+=" -isystem @out@/include/c++/v1" +export NIX_CXXSTDLIB_LINK=" -stdlib=libc++${linkCxxAbi:+" -lc++abi"}" diff --git a/pkgs/development/compilers/llvm/5/libc++abi.nix b/pkgs/development/compilers/llvm/5/libc++abi.nix new file mode 100644 index 000000000000..5a2a269345d6 --- /dev/null +++ b/pkgs/development/compilers/llvm/5/libc++abi.nix @@ -0,0 +1,47 @@ +{ stdenv, cmake, fetch, libcxx, libunwind, llvm, version }: + +stdenv.mkDerivation { + name = "libc++abi-${version}"; + + src = fetch "libcxxabi" "04c9dfmrr8diih73x0wq99dk9xb99mg0bvsnbhx5q912xg3ihs8p"; + + nativeBuildInputs = [ cmake ]; + buildInputs = stdenv.lib.optional (!stdenv.isDarwin && !stdenv.isFreeBSD) libunwind; + + postUnpack = '' + unpackFile ${libcxx.src} + unpackFile ${llvm.src} + export cmakeFlags="-DLLVM_PATH=$PWD/$(ls -d llvm-*) -DLIBCXXABI_LIBCXX_PATH=$PWD/$(ls -d libcxx-*)" + '' + stdenv.lib.optionalString stdenv.isDarwin '' + export TRIPLE=x86_64-apple-darwin + ''; + + installPhase = if stdenv.isDarwin + then '' + for file in lib/*.dylib; do + # this should be done in CMake, but having trouble figuring out + # the magic combination of necessary CMake variables + # if you fancy a try, take a look at + # http://www.cmake.org/Wiki/CMake_RPATH_handling + install_name_tool -id $out/$file $file + done + make install + install -d 755 $out/include + install -m 644 ../include/*.h $out/include + '' + else '' + install -d -m 755 $out/include $out/lib + install -m 644 lib/libc++abi.so.1.0 $out/lib + install -m 644 ../include/cxxabi.h $out/include + ln -s libc++abi.so.1.0 $out/lib/libc++abi.so + ln -s libc++abi.so.1.0 $out/lib/libc++abi.so.1 + ''; + + meta = { + homepage = http://libcxxabi.llvm.org/; + description = "A new implementation of low level support for a standard C++ library"; + license = with stdenv.lib.licenses; [ ncsa mit ]; + maintainers = with stdenv.lib.maintainers; [ vlstill ]; + platforms = stdenv.lib.platforms.unix; + }; +} diff --git a/pkgs/development/compilers/llvm/5/lld.nix b/pkgs/development/compilers/llvm/5/lld.nix new file mode 100644 index 000000000000..f19a9afc8044 --- /dev/null +++ b/pkgs/development/compilers/llvm/5/lld.nix @@ -0,0 +1,33 @@ +{ stdenv +, fetch +, cmake +, zlib +, llvm +, python +, version +}: + +stdenv.mkDerivation { + name = "lld-${version}"; + + src = fetch "lld" "15rqsmfw0jlsri7hszbs8l0j7v1030cy9xvvdb245397llh7k6ir"; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ llvm ]; + + outputs = [ "out" "dev" ]; + + enableParallelBuilding = true; + + postInstall = '' + moveToOutput include "$dev" + moveToOutput lib "$dev" + ''; + + meta = { + description = "The LLVM Linker"; + homepage = http://lld.llvm.org/; + license = stdenv.lib.licenses.ncsa; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/development/compilers/llvm/5/lldb.nix b/pkgs/development/compilers/llvm/5/lldb.nix new file mode 100644 index 000000000000..fac23b290bcb --- /dev/null +++ b/pkgs/development/compilers/llvm/5/lldb.nix @@ -0,0 +1,51 @@ +{ stdenv +, fetch +, cmake +, zlib +, ncurses +, swig +, which +, libedit +, libxml2 +, llvm +, clang-unwrapped +, python +, version +, darwin +}: + +stdenv.mkDerivation { + name = "lldb-${version}"; + + src = fetch "lldb" "0zcbav39srf6awv9znvzr7nqdrj704i8da3wdgc8362y20rcm860"; + + postPatch = '' + # Fix up various paths that assume llvm and clang are installed in the same place + sed -i 's,".*ClangConfig.cmake","${clang-unwrapped}/lib/cmake/clang/ClangConfig.cmake",' \ + cmake/modules/LLDBStandalone.cmake + sed -i 's,".*tools/clang/include","${clang-unwrapped}/include",' \ + cmake/modules/LLDBStandalone.cmake + sed -i 's,"$.LLVM_LIBRARY_DIR.",${llvm}/lib ${clang-unwrapped}/lib,' \ + cmake/modules/LLDBStandalone.cmake + ''; + + nativeBuildInputs = [ cmake python which swig ]; + buildInputs = [ ncurses zlib libedit libxml2 llvm ] + ++ stdenv.lib.optionals stdenv.isDarwin [ darwin.libobjc darwin.apple_sdk.libs.xpc darwin.apple_sdk.frameworks.Foundation darwin.bootstrap_cmds darwin.apple_sdk.frameworks.Carbon darwin.apple_sdk.frameworks.Cocoa ]; + + CXXFLAGS = "-fno-rtti"; + hardeningDisable = [ "format" ]; + + cmakeFlags = [ + "-DLLDB_CODESIGN_IDENTITY=" # codesigning makes nondeterministic + ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "A next-generation high-performance debugger"; + homepage = http://llvm.org/; + license = licenses.ncsa; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/compilers/llvm/5/llvm-outputs.patch b/pkgs/development/compilers/llvm/5/llvm-outputs.patch new file mode 100644 index 000000000000..40096fa3497f --- /dev/null +++ b/pkgs/development/compilers/llvm/5/llvm-outputs.patch @@ -0,0 +1,26 @@ +diff --git a/tools/llvm-config/llvm-config.cpp b/tools/llvm-config/llvm-config.cpp +index 94d426b..37f7794 100644 +--- a/tools/llvm-config/llvm-config.cpp ++++ b/tools/llvm-config/llvm-config.cpp +@@ -333,6 +333,21 @@ int main(int argc, char **argv) { + ActiveIncludeOption = "-I" + ActiveIncludeDir; + } + ++ /// Nix-specific multiple-output handling: override ActiveLibDir if --link-shared ++ if (!IsInDevelopmentTree) { ++ bool WantShared = true; ++ for (int i = 1; i < argc; ++i) { ++ StringRef Arg = argv[i]; ++ if (Arg == "--link-shared") ++ WantShared = true; ++ else if (Arg == "--link-static") ++ WantShared = false; // the last one wins ++ } ++ ++ if (WantShared) ++ ActiveLibDir = std::string("@lib@") + "/lib" + LLVM_LIBDIR_SUFFIX; ++ } ++ + /// We only use `shared library` mode in cases where the static library form + /// of the components provided are not available; note however that this is + /// skipped if we're run from within the build dir. However, once installed, diff --git a/pkgs/development/compilers/llvm/5/llvm.nix b/pkgs/development/compilers/llvm/5/llvm.nix new file mode 100644 index 000000000000..946c04a2ab4e --- /dev/null +++ b/pkgs/development/compilers/llvm/5/llvm.nix @@ -0,0 +1,153 @@ +{ stdenv +, fetch +, fetchpatch +, perl +, groff +, cmake +, python +, libffi +, binutils +, libxml2 +, valgrind +, ncurses +, version +, release_version +, zlib +, compiler-rt_src +, libcxxabi +, debugVersion ? false +, enableManpages ? false +, enableSharedLibraries ? true +, darwin +}: + +let + src = fetch "llvm" "1nin64vz21hyng6jr19knxipvggaqlkl2l9jpd5czbc4c2pcnpg3"; + + # Used when creating a version-suffixed symlink of libLLVM.dylib + shortVersion = with stdenv.lib; + concatStringsSep "." (take 2 (splitString "." release_version)); +in stdenv.mkDerivation rec { + name = "llvm-${version}"; + + unpackPhase = '' + unpackFile ${src} + mv llvm-${version}* llvm + sourceRoot=$PWD/llvm + unpackFile ${compiler-rt_src} + mv compiler-rt-* $sourceRoot/projects/compiler-rt + ''; + + outputs = [ "out" ] + ++ stdenv.lib.optional enableSharedLibraries "lib" + ++ stdenv.lib.optional enableManpages "man"; + + nativeBuildInputs = [ perl groff cmake python ] + ++ stdenv.lib.optional enableManpages python.pkgs.sphinx; + + buildInputs = [ libxml2 libffi ] + ++ stdenv.lib.optionals stdenv.isDarwin [ libcxxabi ]; + + propagatedBuildInputs = [ ncurses zlib ]; + + # TSAN requires XPC on Darwin, which we have no public/free source files for. We can depend on the Apple frameworks + # to get it, but they're unfree. Since LLVM is rather central to the stdenv, we patch out TSAN support so that Hydra + # can build this. If we didn't do it, basically the entire nixpkgs on Darwin would have an unfree dependency and we'd + # get no binary cache for the entire platform. If you really find yourself wanting the TSAN, make this controllable by + # a flag and turn the flag off during the stdenv build. + postPatch = stdenv.lib.optionalString stdenv.isDarwin '' + substituteInPlace ./projects/compiler-rt/cmake/config-ix.cmake \ + --replace 'set(COMPILER_RT_HAS_TSAN TRUE)' 'set(COMPILER_RT_HAS_TSAN FALSE)' + '' + # Patch llvm-config to return correct library path based on --link-{shared,static}. + + stdenv.lib.optionalString (enableSharedLibraries) '' + substitute '${./llvm-outputs.patch}' ./llvm-outputs.patch --subst-var lib + patch -p1 < ./llvm-outputs.patch + '' + '' + # FileSystem permissions tests fail with various special bits + substituteInPlace unittests/Support/CMakeLists.txt \ + --replace "Path.cpp" "" + rm unittests/Support/Path.cpp + + # Revert compiler-rt commit that makes codesign mandatory + patch -p1 -i ${./compiler-rt-codesign.patch} -d projects/compiler-rt + ''; + + # hacky fix: created binaries need to be run before installation + preBuild = '' + mkdir -p $out/ + ln -sv $PWD/lib $out + ''; + + cmakeFlags = with stdenv; [ + "-DCMAKE_BUILD_TYPE=${if debugVersion then "Debug" else "Release"}" + "-DLLVM_INSTALL_UTILS=ON" # Needed by rustc + "-DLLVM_BUILD_TESTS=ON" + "-DLLVM_ENABLE_FFI=ON" + "-DLLVM_ENABLE_RTTI=ON" + "-DCOMPILER_RT_INCLUDE_TESTS=OFF" # FIXME: requires clang source code + ] + ++ stdenv.lib.optional enableSharedLibraries + "-DLLVM_LINK_LLVM_DYLIB=ON" + ++ stdenv.lib.optionals enableManpages [ + "-DLLVM_BUILD_DOCS=ON" + "-DLLVM_ENABLE_SPHINX=ON" + "-DSPHINX_OUTPUT_MAN=ON" + "-DSPHINX_OUTPUT_HTML=OFF" + "-DSPHINX_WARNINGS_AS_ERRORS=OFF" + ] + ++ stdenv.lib.optional (!isDarwin) + "-DLLVM_BINUTILS_INCDIR=${stdenv.lib.getDev binutils}/include" + ++ stdenv.lib.optionals (isDarwin) [ + "-DLLVM_ENABLE_LIBCXX=ON" + "-DCAN_TARGET_i386=false" + ]; + + postBuild = '' + rm -fR $out + + paxmark m bin/{lli,llvm-rtdyld} + paxmark m unittests/ExecutionEngine/MCJIT/MCJITTests + paxmark m unittests/ExecutionEngine/Orc/OrcJITTests + paxmark m unittests/Support/SupportTests + paxmark m bin/lli-child-target + ''; + + preCheck = '' + export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PWD/lib + ''; + + postInstall = stdenv.lib.optionalString enableManpages '' + moveToOutput "share/man" "$man" + '' + + stdenv.lib.optionalString enableSharedLibraries '' + moveToOutput "lib/libLLVM-*" "$lib" + moveToOutput "lib/libLLVM${stdenv.hostPlatform.extensions.sharedLibrary}" "$lib" + substituteInPlace "$out/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" \ + --replace "\''${_IMPORT_PREFIX}/lib/libLLVM-" "$lib/lib/libLLVM-" + '' + + stdenv.lib.optionalString (stdenv.isDarwin && enableSharedLibraries) '' + substituteInPlace "$out/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" \ + --replace "\''${_IMPORT_PREFIX}/lib/libLLVM.dylib" "$lib/lib/libLLVM.dylib" + install_name_tool -id $lib/lib/libLLVM.dylib $lib/lib/libLLVM.dylib + install_name_tool -change @rpath/libLLVM.dylib $lib/lib/libLLVM.dylib $out/bin/llvm-config + ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib + ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib + ''; + + doCheck = stdenv.isLinux && (!stdenv.isi686); + + checkTarget = "check-all"; + + enableParallelBuilding = true; + + passthru.src = src; + + meta = { + description = "Collection of modular and reusable compiler and toolchain technologies"; + homepage = http://llvm.org/; + license = stdenv.lib.licenses.ncsa; + maintainers = with stdenv.lib.maintainers; [ lovek323 raskin viric dtzWill ]; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/development/compilers/llvm/5/openmp.nix b/pkgs/development/compilers/llvm/5/openmp.nix new file mode 100644 index 000000000000..9ba42eed2e2e --- /dev/null +++ b/pkgs/development/compilers/llvm/5/openmp.nix @@ -0,0 +1,26 @@ +{ stdenv +, fetch +, cmake +, zlib +, llvm +, perl +, version +}: + +stdenv.mkDerivation { + name = "openmp-${version}"; + + src = fetch "openmp" "1igplg89bl6k6r9q88hnpcznq3g9lb79w7bix025lwp00ldhivy0"; + + nativeBuildInputs = [ cmake perl ]; + buildInputs = [ llvm ]; + + enableParallelBuilding = true; + + meta = { + description = "Components required to build an executable OpenMP program"; + homepage = http://openmp.llvm.org/; + license = stdenv.lib.licenses.mit; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/development/compilers/nim/default.nix b/pkgs/development/compilers/nim/default.nix index 101f8ab64ba5..fde4861e982f 100644 --- a/pkgs/development/compilers/nim/default.nix +++ b/pkgs/development/compilers/nim/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "nim-${version}"; - version = "0.17.0"; + version = "0.17.2"; src = fetchurl { url = "http://nim-lang.org/download/${name}.tar.xz"; - sha256 = "16vsmk4rqnkg9lc9h9jk62ps0x778cdqg6qrs3k6fv2g73cqvq9n"; + sha256 = "1gc2xk3ygmz9y4pm75pligssgw995a7gvnfpy445fjpw4d81pzxa"; }; doCheck = true; diff --git a/pkgs/development/compilers/opa/default.nix b/pkgs/development/compilers/opa/default.nix index 9501b5a3a06e..7b9e00b105db 100644 --- a/pkgs/development/compilers/opa/default.nix +++ b/pkgs/development/compilers/opa/default.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation rec { buildInputs = [ which perl jdk openssl coreutils zlib ncurses makeWrapper gcc binutils gnumake nodejs ] ++ (with ocamlPackages; [ - ocaml findlib ocaml_ssl cryptokit camlzip ulex ocamlgraph camlp4 + ocaml findlib ssl cryptokit camlzip ulex ocamlgraph camlp4 ]); NIX_LDFLAGS = stdenv.lib.optionalString (!stdenv.isDarwin) "-lgcc_s"; diff --git a/pkgs/development/compilers/oraclejdk/jdk9-linux.nix b/pkgs/development/compilers/oraclejdk/jdk9-linux.nix new file mode 100644 index 000000000000..7f0a5750c0e8 --- /dev/null +++ b/pkgs/development/compilers/oraclejdk/jdk9-linux.nix @@ -0,0 +1,175 @@ +{ swingSupport ? true +, stdenv +, requireFile +, makeWrapper +, unzip +, file +, xorg ? null +, packageType ? "JDK" # JDK, JRE, or ServerJRE +, pluginSupport ? true +, installjce ? false +, glib +, libxml2 +, ffmpeg_2 +, libxslt +, mesa_noglu +, freetype +, fontconfig +, gtk2 +, pango +, cairo +, alsaLib +, atk +, gdk_pixbuf +, zlib +, elfutils +, setJavaClassPath +}: + +assert stdenv.system == "x86_64-linux"; +assert swingSupport -> xorg != null; + +let + version = "9"; + + downloadUrlBase = http://www.oracle.com/technetwork/java/javase/downloads; + + jce = + if installjce then + requireFile { + name = "jce_policy-8.zip"; + url = "${downloadUrlBase}/jce8-download-2133166.html"; + sha256 = "0n8b6b8qmwb14lllk2lk1q1ahd3za9fnjigz5xn65mpg48whl0pk"; + } + else + ""; + + rSubPaths = [ + "lib/jli" + "lib/server" + "lib" + ]; + +in + +let result = stdenv.mkDerivation rec { + name = if packageType == "JDK" then "oraclejdk-${version}" + else if packageType == "JRE" then "oraclejre-${version}" + else if packageType == "ServerJRE" then "oracleserverjre-${version}" + else abort "unknown package Type ${packageType}"; + + src = + if packageType == "JDK" then + requireFile { + name = "jdk-${version}_linux-x64_bin.tar.gz"; + url = "${downloadUrlBase}/jdk9-downloads-3848520.html"; + sha256 = "0vbgy7h9h089l3xh6sl57v57g28x1djyiigqs4z6gh7wahx7hv8w"; + } + else if packageType == "JRE" then + requireFile { + name = "jre-${version}_linux-x64_bin.tar.gz"; + url = "${downloadUrlBase}/jre9-downloads-3848532.html"; + sha256 = "18i4jjb6sby67xg5ql6dkk3ja1nackbb23g1bnp522450nclpxdb"; + } + else if packageType == "ServerJRE" then + requireFile { + name = "serverjre-${version}_linux-x64_bin.tar.gz"; + url = "${downloadUrlBase}/server-jre9-downloads-3848530.html"; + sha256 = "01bxi7lx13lhlpbifw93b6r7a9bayiykw8kzwlyyqi8pz3pw8c5h"; + } + else abort "unknown package Type ${packageType}"; + + nativeBuildInputs = [ file ] + ++ stdenv.lib.optional installjce unzip; + + buildInputs = [ makeWrapper ]; + + # See: https://github.com/NixOS/patchelf/issues/10 + dontStrip = 1; + + installPhase = '' + cd .. + + # Set PaX markings + exes=$(file $sourceRoot/bin/* 2> /dev/null | grep -E 'ELF.*(executable|shared object)' | sed -e 's/: .*$//') + for file in $exes; do + paxmark m "$file" + # On x86 for heap sizes over 700MB disable SEGMEXEC and PAGEEXEC as well. + ${stdenv.lib.optionalString stdenv.isi686 ''paxmark msp "$file"''} + done + + mv $sourceRoot $out + + shopt -s extglob + for file in $out/* + do + if test -f $file ; then + rm $file + fi + done + + if test -n "${jce}"; then + unzip ${jce} + cp -v UnlimitedJCEPolicy*/*.jar $out/lib/security + fi + + if test -z "$pluginSupport"; then + rm -f $out/bin/javaws + fi + + mkdir $out/lib/plugins + ln -s $out/lib/libnpjp2.so $out/lib/plugins + + # for backward compatibility + ln -s $out $out/jre + + mkdir -p $out/nix-support + printWords ${setJavaClassPath} > $out/nix-support/propagated-native-build-inputs + + # Set JAVA_HOME automatically. + cat <<EOF >> $out/nix-support/setup-hook + if [ -z "\$JAVA_HOME" ]; then export JAVA_HOME=$out; fi + EOF + ''; + + postFixup = '' + rpath+="''${rpath:+:}${stdenv.lib.concatStringsSep ":" (map (a: "$out/${a}") rSubPaths)}" + + # set all the dynamic linkers + find $out -type f -perm -0100 \ + -exec patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ + --set-rpath "$rpath" {} \; + + find $out -name "*.so" -exec patchelf --set-rpath "$rpath" {} \; + + # Oracle Java Mission Control needs to know where libgtk-x11 and related is + if test -x $out/bin/jmc; then + wrapProgram "$out/bin/jmc" \ + --suffix-each LD_LIBRARY_PATH ':' "$rpath" + fi + ''; + + /** + * libXt is only needed on amd64 + */ + libraries = + [stdenv.cc.libc glib libxml2 ffmpeg_2 libxslt mesa_noglu xorg.libXxf86vm alsaLib fontconfig freetype pango gtk2 cairo gdk_pixbuf atk zlib elfutils] ++ + (if swingSupport then [xorg.libX11 xorg.libXext xorg.libXtst xorg.libXi xorg.libXp xorg.libXt xorg.libXrender stdenv.cc.cc] else []); + + rpath = stdenv.lib.strings.makeLibraryPath libraries; + + passthru.mozillaPlugin = "/lib/plugins"; + + passthru.jre = result; # FIXME: use multiple outputs or return actual JRE package + + passthru.home = result; + + # for backward compatibility + passthru.architecture = ""; + + meta = with stdenv.lib; { + license = licenses.unfree; + platforms = [ "x86_64-linux" ]; # some inherit jre.meta.platforms + }; + +}; in result diff --git a/pkgs/development/compilers/rust/beta.nix b/pkgs/development/compilers/rust/beta.nix index 93aaeb9e16e4..876c54a298b4 100644 --- a/pkgs/development/compilers/rust/beta.nix +++ b/pkgs/development/compilers/rust/beta.nix @@ -25,6 +25,7 @@ rec { ] ++ stdenv.lib.optional stdenv.needsPax ./patches/grsec.patch; doCheck = false; + broken = true; }; cargo = callPackage ./cargo.nix rec { diff --git a/pkgs/development/compilers/rust/nightly.nix b/pkgs/development/compilers/rust/nightly.nix index b69dffbd8b38..37a234ea129e 100644 --- a/pkgs/development/compilers/rust/nightly.nix +++ b/pkgs/development/compilers/rust/nightly.nix @@ -22,6 +22,7 @@ rec { ] ++ stdenv.lib.optional stdenv.needsPax ./patches/grsec.patch; doCheck = false; + broken = true; }; cargo = callPackage ./cargo.nix rec { diff --git a/pkgs/development/compilers/rust/rustc.nix b/pkgs/development/compilers/rust/rustc.nix index f5bcc73fd6d1..73d78319b8c7 100644 --- a/pkgs/development/compilers/rust/rustc.nix +++ b/pkgs/development/compilers/rust/rustc.nix @@ -10,6 +10,7 @@ , targetPatches , targetToolchains , doCheck ? true +, broken ? false , buildPlatform, hostPlatform } @ args: @@ -154,5 +155,6 @@ stdenv.mkDerivation { maintainers = with maintainers; [ madjar cstrahan wizeman globin havvy wkennington ]; license = [ licenses.mit licenses.asl20 ]; platforms = platforms.linux ++ platforms.darwin; + broken = broken; }; } diff --git a/pkgs/development/compilers/sbcl/default.nix b/pkgs/development/compilers/sbcl/default.nix index 2ee7d2b7e113..85004767e582 100644 --- a/pkgs/development/compilers/sbcl/default.nix +++ b/pkgs/development/compilers/sbcl/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation rec { name = "sbcl-${version}"; - version = "1.3.21"; + version = "1.4.0"; src = fetchurl { url = "mirror://sourceforge/project/sbcl/sbcl/${version}/${name}-source.tar.bz2"; - sha256 = "13hmavfmxsqp2s89aa6kljpgjm6c2063bgrz0maq1ms1y3052k38"; + sha256 = "0s87ax5hg9hz6b8kc9yrjckgz56s9iv96l2dcq216cbqkykrrm88"; }; patchPhase = '' diff --git a/pkgs/development/compilers/swift/default.nix b/pkgs/development/compilers/swift/default.nix index 6cc9f372b978..7484d2568be9 100644 --- a/pkgs/development/compilers/swift/default.nix +++ b/pkgs/development/compilers/swift/default.nix @@ -263,6 +263,7 @@ stdenv.mkDerivation rec { license = licenses.asl20; # Swift doesn't support 32bit Linux, unknown on other platforms. platforms = [ "x86_64-linux" ]; + broken = true; }; } diff --git a/pkgs/development/compilers/tinycc/default.nix b/pkgs/development/compilers/tinycc/default.nix index 8e56c1ee50b3..4d6555213345 100644 --- a/pkgs/development/compilers/tinycc/default.nix +++ b/pkgs/development/compilers/tinycc/default.nix @@ -2,9 +2,9 @@ with stdenv.lib; let - date = "20170911"; - rev = "870271ea071971002fa556e09e1873db316fa1a9"; - sha256 = "1a9djm0p7cd5nzqdhch9y48c4wai76x6d4nwx0bj5jz46ws39bs9"; + date = "20170924"; + rev = "1443039416dd02750765efde1af35e31c8d41be3"; + sha256 = "060l0f77hirq3i5bg294gxcszlvyn89ds2q21jwgy3ryrapfbl8i"; version = "0.9.27pre-${date}"; in diff --git a/pkgs/development/compilers/urweb/default.nix b/pkgs/development/compilers/urweb/default.nix index 7145a8f2fa04..74ca5dc4c4b0 100644 --- a/pkgs/development/compilers/urweb/default.nix +++ b/pkgs/development/compilers/urweb/default.nix @@ -1,5 +1,5 @@ { stdenv, lib, fetchurl, file, openssl, mlton -, mysql, postgresql, sqlite +, mysql, postgresql, sqlite, gcc }: stdenv.mkDerivation rec { @@ -24,8 +24,10 @@ stdenv.mkDerivation rec { export MSHEADER="${lib.getDev mysql.client}/include/mysql/mysql.h"; export SQHEADER="${sqlite.dev}/include/sqlite3.h"; + export CC="${gcc}/bin/gcc"; export CCARGS="-I$out/include \ - -L${lib.getLib mysql.client}/lib/mysql \ + -L${openssl.out}/lib \ + -L${lib.getLib mysql.client}/lib \ -L${postgresql.lib}/lib \ -L${sqlite.out}/lib"; ''; @@ -37,7 +39,7 @@ stdenv.mkDerivation rec { description = "Advanced purely-functional web programming language"; homepage = "http://www.impredicative.com/ur/"; license = stdenv.lib.licenses.bsd3; - platforms = stdenv.lib.platforms.linux; + platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; maintainers = [ stdenv.lib.maintainers.thoughtpolice stdenv.lib.maintainers.sheganinans ]; }; } diff --git a/pkgs/development/compilers/vala/default.nix b/pkgs/development/compilers/vala/default.nix index 42b81a21a671..baf48d7a532c 100644 --- a/pkgs/development/compilers/vala/default.nix +++ b/pkgs/development/compilers/vala/default.nix @@ -1,9 +1,9 @@ -{ stdenv, fetchurl, pkgconfig, flex, bison, libxslt -, glib, libiconv, libintlOrEmpty +{ stdenv, fetchurl, pkgconfig, flex, bison, libxslt, autoconf, graphviz +, glib, libiconv, libintlOrEmpty, libtool, expat }: let - generic = { major, minor, sha256 }: + generic = { major, minor, sha256, extraNativeBuildInputs ? [], extraBuildInputs ? [] }: stdenv.mkDerivation rec { name = "vala-${major}.${minor}"; @@ -12,9 +12,9 @@ let inherit sha256; }; - nativeBuildInputs = [ pkgconfig flex bison libxslt ]; + nativeBuildInputs = [ pkgconfig flex bison libxslt ] ++ extraNativeBuildInputs; - buildInputs = [ glib libiconv ] ++ libintlOrEmpty; + buildInputs = [ glib libiconv ] ++ libintlOrEmpty ++ extraBuildInputs; meta = with stdenv.lib; { description = "Compiler for GObject type system"; @@ -57,5 +57,13 @@ in rec { sha256 = "16cjybjw100qps6jg0jdyjh8hndz8a876zmxpybnf30a8vygrk7m"; }; + vala_0_38 = generic { + major = "0.38"; + minor = "1"; + sha256 = "112hl3lkcyakrk8c3qgw12gzn3nxjkvx7bn0jhl5f2m57d7k8d8h"; + extraNativeBuildInputs = [ autoconf ] ++ stdenv.lib.optionals stdenv.isDarwin [ libtool expat ]; + extraBuildInputs = [ graphviz ]; + }; + vala = vala_0_34; } diff --git a/pkgs/development/compilers/zulu/8.nix b/pkgs/development/compilers/zulu/8.nix new file mode 100644 index 000000000000..f7638757ff7a --- /dev/null +++ b/pkgs/development/compilers/zulu/8.nix @@ -0,0 +1,82 @@ +{ stdenv, lib, fetchurl, unzip, makeWrapper, setJavaClassPath +, zulu, glib, libxml2, libav_0_8, ffmpeg, libxslt, mesa_noglu, alsaLib +, fontconfig, freetype, gnome2, cairo, gdk_pixbuf, atk, xorg +, swingSupport ? true }: + +let + version = "8.21.0.1"; + openjdk = "8.0.131"; + + sha256_linux = "0cr1wvk1ifdq69ia8sr6171yzciba8l5x7dszwa5g2v0vmmqq88p"; + sha256_darwin = "0xq9bdzbdq8wq48gj6j56bw30l2iafz6sy1wdhrf92n9bnz5qmw7"; + + platform = if stdenv.isDarwin then "macosx" else "linux"; + hash = if stdenv.isDarwin then sha256_darwin else sha256_linux; + extension = if stdenv.isDarwin then "zip" else "tar.gz"; + + libraries = [ + stdenv.cc.libc glib libxml2 libav_0_8 ffmpeg libxslt mesa_noglu + xorg.libXxf86vm alsaLib fontconfig freetype gnome2.pango + gnome2.gtk cairo gdk_pixbuf atk + ] ++ (lib.optionals swingSupport (with xorg; [ + xorg.libX11 xorg.libXext xorg.libXtst xorg.libXi xorg.libXp + xorg.libXt xorg.libXrender stdenv.cc.cc + ])); + +in stdenv.mkDerivation rec { + inherit version openjdk platform hash extension; + + name = "zulu-${version}"; + + src = fetchurl { + url = "https://cdn.azul.com/zulu/bin/zulu${version}-jdk${openjdk}-${platform}_x64.${extension}"; + sha256 = hash; + }; + + buildInputs = [ makeWrapper ] ++ lib.optional stdenv.isDarwin unzip; + + installPhase = '' + mkdir -p $out + cp -r ./* "$out/" + + jrePath="$out/jre" + + rpath=$rpath''${rpath:+:}$jrePath/lib/amd64/jli + rpath=$rpath''${rpath:+:}$jrePath/lib/amd64/server + rpath=$rpath''${rpath:+:}$jrePath/lib/amd64/xawt + rpath=$rpath''${rpath:+:}$jrePath/lib/amd64 + + # set all the dynamic linkers + find $out -type f -perm -0100 \ + -exec patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ + --set-rpath "$rpath" {} \; + + find $out -name "*.so" -exec patchelf --set-rpath "$rpath" {} \; + + mkdir -p $out/nix-support + printWords ${setJavaClassPath} > $out/nix-support/propagated-native-build-inputs + + # Set JAVA_HOME automatically. + cat <<EOF >> $out/nix-support/setup-hook + if [ -z "\$JAVA_HOME" ]; then export JAVA_HOME=$out; fi + EOF + ''; + + rpath = stdenv.lib.strings.makeLibraryPath libraries; + + passthru = { + home = "${zulu}"; + }; + + meta = with stdenv.lib; { + homepage = https://www.azul.com/products/zulu/; + license = licenses.gpl2; + description = "Certified builds of OpenJDK"; + longDescription = '' + Certified builds of OpenJDK that can be deployed across multiple + operating systems, containers, hypervisors and Cloud platforms. + ''; + maintainers = with maintainers; [ nequissimus fpletz ]; + platforms = [ "x86_64-linux" "x86_64-darwin" ]; + }; +} diff --git a/pkgs/development/compilers/zulu/default.nix b/pkgs/development/compilers/zulu/default.nix index f7638757ff7a..92f1f0a111ed 100644 --- a/pkgs/development/compilers/zulu/default.nix +++ b/pkgs/development/compilers/zulu/default.nix @@ -1,14 +1,14 @@ { stdenv, lib, fetchurl, unzip, makeWrapper, setJavaClassPath , zulu, glib, libxml2, libav_0_8, ffmpeg, libxslt, mesa_noglu, alsaLib -, fontconfig, freetype, gnome2, cairo, gdk_pixbuf, atk, xorg +, fontconfig, freetype, gnome2, cairo, gdk_pixbuf, atk, xorg, zlib , swingSupport ? true }: let - version = "8.21.0.1"; - openjdk = "8.0.131"; + version = "9.0.0.15"; + openjdk = "9.0.0"; - sha256_linux = "0cr1wvk1ifdq69ia8sr6171yzciba8l5x7dszwa5g2v0vmmqq88p"; - sha256_darwin = "0xq9bdzbdq8wq48gj6j56bw30l2iafz6sy1wdhrf92n9bnz5qmw7"; + sha256_linux = "0s9vr135yhdnxqds4hfafyrlh33j6g78v6l1v0ap2y6yqgabh9qi"; + sha256_darwin = "104w1msrwijf8dv3n65hjinp7i47z6ygzjipdzqriqam2zljxn4b"; platform = if stdenv.isDarwin then "macosx" else "linux"; hash = if stdenv.isDarwin then sha256_darwin else sha256_linux; @@ -17,7 +17,7 @@ let libraries = [ stdenv.cc.libc glib libxml2 libav_0_8 ffmpeg libxslt mesa_noglu xorg.libXxf86vm alsaLib fontconfig freetype gnome2.pango - gnome2.gtk cairo gdk_pixbuf atk + gnome2.gtk cairo gdk_pixbuf atk zlib ] ++ (lib.optionals swingSupport (with xorg; [ xorg.libX11 xorg.libXext xorg.libXtst xorg.libXi xorg.libXp xorg.libXt xorg.libXrender stdenv.cc.cc @@ -39,12 +39,9 @@ in stdenv.mkDerivation rec { mkdir -p $out cp -r ./* "$out/" - jrePath="$out/jre" - - rpath=$rpath''${rpath:+:}$jrePath/lib/amd64/jli - rpath=$rpath''${rpath:+:}$jrePath/lib/amd64/server - rpath=$rpath''${rpath:+:}$jrePath/lib/amd64/xawt - rpath=$rpath''${rpath:+:}$jrePath/lib/amd64 + rpath=$rpath''${rpath:+:}$out/lib/jli + rpath=$rpath''${rpath:+:}$out/lib/server + rpath=$rpath''${rpath:+:}$out/lib # set all the dynamic linkers find $out -type f -perm -0100 \ diff --git a/pkgs/development/go-modules/generic/default.nix b/pkgs/development/go-modules/generic/default.nix index c2e4b39472c4..5a1a0eb52eb3 100644 --- a/pkgs/development/go-modules/generic/default.nix +++ b/pkgs/development/go-modules/generic/default.nix @@ -123,7 +123,7 @@ go.stdenv.mkDerivation ( [ -n "$excludedPackages" ] && echo "$d" | grep -q "$excludedPackages" && return 0 local OUT if ! OUT="$(go $cmd $buildFlags "''${buildFlagsArray[@]}" -v $d 2>&1)"; then - if ! echo "$OUT" | grep -q 'no buildable Go source files'; then + if ! echo "$OUT" | grep -qE '(no( buildable| non-test)?|build constraints exclude all) Go (source )?files'; then echo "$OUT" >&2 return 1 fi diff --git a/pkgs/development/guile-modules/guile-gnome/default.nix b/pkgs/development/guile-modules/guile-gnome/default.nix index aae44e2f6d84..12648cab7dc3 100644 --- a/pkgs/development/guile-modules/guile-gnome/default.nix +++ b/pkgs/development/guile-modules/guile-gnome/default.nix @@ -1,58 +1,41 @@ { fetchurl, stdenv, guile, guile-lib, gwrap , pkgconfig, gconf, glib, gnome_vfs, gtk2 , libglade, libgnome, libgnomecanvas, libgnomeui -, pango, guile-cairo, autoconf, automake, texinfo }: +, pango, guile-cairo, texinfo +}: stdenv.mkDerivation rec { - name = "guile-gnome-platform-2.16.4"; + name = "${pname}-${version}"; + pname = "guile-gnome-platform"; + version = "2.16.4"; src = fetchurl { - url = "http://ftp.gnu.org/pub/gnu/guile-gnome/guile-gnome-platform/${name}.tar.gz"; + url = "mirror://gnu/guile-gnome/${pname}/${name}.tar.gz"; sha256 = "adabd48ed5993d8528fd604e0aa0d96ad81a61d06da6cdd68323572ad6c216c3"; }; buildInputs = [ - autoconf - automake - texinfo - guile - gwrap - pkgconfig - gconf - glib - gnome_vfs - gtk2 - libglade - libgnome - libgnomecanvas - libgnomeui - pango - guile-cairo + texinfo guile gwrap pkgconfig gconf glib gnome_vfs gtk2 + libglade libgnome libgnomecanvas libgnomeui pango guile-cairo ] ++ stdenv.lib.optional doCheck guile-lib; - preConfigure = '' - ./autogen.sh - ''; - # The test suite tries to open an X display, which fails. doCheck = false; + GUILE_AUTO_COMPILE = 0; + meta = with stdenv.lib; { description = "GNOME bindings for GNU Guile"; - - longDescription = - '' GNU guile-gnome brings the power of Scheme to your graphical - application. guile-gnome modules support the entire Gnome library - stack: from Pango to GnomeCanvas, Gtk+ to GStreamer, Glade to - GtkSourceView, you will find in guile-gnome a comprehensive - environment for developing modern applications. - ''; - - homepage = http://www.gnu.org/software/guile-gnome/; - + longDescription = '' + GNU guile-gnome brings the power of Scheme to your graphical application. + guile-gnome modules support the entire Gnome library stack: from Pango to + GnomeCanvas, Gtk+ to GStreamer, Glade to GtkSourceView, you will find in + guile-gnome a comprehensive environment for developing modern + applications. + ''; + homepage = "http://www.gnu.org/software/guile-gnome/"; license = licenses.gpl2Plus; - - maintainers = with maintainers; [ taktoa amiloradovsky ]; - platforms = with platforms; linux; + maintainers = with maintainers; [ vyp ]; + platforms = platforms.linux; }; } diff --git a/pkgs/development/guile-modules/guile-sdl/default.nix b/pkgs/development/guile-modules/guile-sdl/default.nix index a7f703028bb3..5f887c3a7be6 100644 --- a/pkgs/development/guile-modules/guile-sdl/default.nix +++ b/pkgs/development/guile-modules/guile-sdl/default.nix @@ -3,12 +3,13 @@ }: stdenv.mkDerivation rec { - name = "guile-sdl-${version}"; - version = "0.5.1"; + name = "${pname}-${version}"; + pname = "guile-sdl"; + version = "0.5.2"; src = fetchurl { - url = "mirror://gnu/guile-sdl/${name}.tar.xz"; - sha256 = "126n4rd0ydh6i2s11ari5k85iivradlf12zq13b34shf9k1wn5am"; + url = "mirror://gnu/${pname}/${name}.tar.xz"; + sha256 = "0cjgs012a9922hn6xqwj66w6qmfs3nycnm56hyykx5n3g5p7ag01"; }; nativeBuildInputs = [ pkgconfig guile ]; diff --git a/pkgs/development/guile-modules/guile-sdl2/default.nix b/pkgs/development/guile-modules/guile-sdl2/default.nix index 52dbd89232b7..b20fc162ef3b 100644 --- a/pkgs/development/guile-modules/guile-sdl2/default.nix +++ b/pkgs/development/guile-modules/guile-sdl2/default.nix @@ -1,46 +1,38 @@ -{ stdenv, - SDL2, - SDL2_image, - SDL2_ttf, - SDL2_mixer, - autoconf, - automake, - fetchgit, - guile, - libtool, - pkgconfig - }: -stdenv.mkDerivation rec { - name = "guile-sdl2-${version}"; - version = "0.1.0"; - buildInputs = [ autoconf - automake - SDL2 - SDL2_image - SDL2_ttf - SDL2_mixer - libtool - guile - pkgconfig ]; - src = fetchgit { - url = "git://dthompson.us/guile-sdl2.git"; - rev = "048f80ddb5c6b03b87bba199a99a6f22d911bfff"; - sha256 = "1v7bc2bsddb46qdzq7cyzlw5i2y175kh66mbzbjky85sjfypb084"; +{ stdenv, fetchurl, guile, libtool, pkgconfig +, SDL2, SDL2_image, SDL2_ttf, SDL2_mixer +}: + +let + name = "${pname}-${version}"; + pname = "guile-sdl2"; + version = "0.2.0"; +in stdenv.mkDerivation { + inherit name; + + src = fetchurl { + url = "https://files.dthompson.us/${pname}/${name}.tar.gz"; + sha256 = "0yq9lsl17cdvj77padvpk3jcw2g6g0pck9jrchc7n2767rrc012b"; }; - preConfigurePhases = [ "bootstrapPhase" ]; - bootstrapPhase = '' - ./bootstrap - ''; - configureFlags = [ "--with-libsdl2-prefix=${SDL2}" - "--with-libsdl2-image-prefix=${SDL2_image}" - "--with-libsdl2-ttf-prefix=${SDL2_ttf}" - "--with-libsdl2-mixer-prefix=${SDL2_mixer}"]; - makeFlags = ["GUILE_AUTO_COMPILE=0"]; - meta = { + + buildInputs = [ + guile libtool pkgconfig + SDL2 SDL2_image SDL2_ttf SDL2_mixer + ]; + + configureFlags = [ + "--with-libsdl2-prefix=${SDL2}" + "--with-libsdl2-image-prefix=${SDL2_image}" + "--with-libsdl2-ttf-prefix=${SDL2_ttf}" + "--with-libsdl2-mixer-prefix=${SDL2_mixer}" + ]; + + makeFlags = [ "GUILE_AUTO_COMPILE=0" ]; + + meta = with stdenv.lib; { description = "Bindings to SDL2 for GNU Guile"; - homepage = https://git.dthompson.us/guile-sdl2.git; - license = stdenv.lib.licenses.gpl3; - maintainers = [ stdenv.lib.maintainers.seppeljordan ]; - platforms = stdenv.lib.platforms.all; + homepage = "https://dthompson.us/projects/guile-sdl2.html"; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ seppeljordan vyp ]; + platforms = platforms.all; }; } diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 9cbbe236a2f1..5941209d7a7e 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -56,14 +56,14 @@ self: super: { clock = dontCheck super.clock; Dust-crypto = dontCheck super.Dust-crypto; hasql-postgres = dontCheck super.hasql-postgres; - hspec-expectations = dontCheck super.hspec-expectations; hspec = super.hspec.override { stringbuilder = dontCheck super.stringbuilder; }; hspec-core = super.hspec-core.override { silently = dontCheck super.silently; temporary = dontCheck super.temporary; }; + hspec-expectations = dontCheck super.hspec-expectations; HTTP = dontCheck super.HTTP; + http-streams = dontCheck super.http-streams; nanospec = dontCheck super.nanospec; options = dontCheck super.options; statistics = dontCheck super.statistics; - http-streams = dontCheck super.http-streams; # segfault due to missing return: https://github.com/haskell/c2hs/pull/184 c2hs = dontCheck super.c2hs; @@ -98,7 +98,7 @@ self: super: { name = "git-annex-${drv.version}-src"; url = "git://git-annex.branchable.com/"; rev = "refs/tags/" + drv.version; - sha256 = "15d29hmbl146axjgbm4qhxpz6ypcq1bjf2aj29yhwh5jmznh58i2"; + sha256 = "03fa03n4zkpj5z3ma1ahvnxd85dni2aikqayqf838jvfl7bd5b9n"; }; })).override { dbus = if pkgs.stdenv.isLinux then self.dbus else null; @@ -962,6 +962,9 @@ self: super: { protolude = super.protolude_0_2; }; + # test suite requires git and does a bunch of git operations + restless-git = dontCheck super.restless-git; + # This tool needs the latest hackage-db version. Using the latest version of # optparse-applicative allows us to generate completions for fish and zsh. cabal2nix = super.cabal2nix.overrideScope (self: super: { @@ -969,4 +972,10 @@ self: super: { optparse-applicative = self.optparse-applicative_0_14_0_0; }); + # Break "hpack >=0.17.0 && <0.19". + stack = doJailbreak super.stack; + + # https://github.com/mgajda/json-autotype/issues/15 + json-autotype = doJailbreak super.json-autotype; + } diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml index 2f1abe68dce1..fad70337e94f 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml @@ -37,7 +37,7 @@ core-packages: - ghcjs-base-0 default-package-overrides: - # LTS Haskell 9.5 + # LTS Haskell 9.6 - abstract-deque ==0.3 - abstract-deque-tests ==0.3 - abstract-par ==0.3.3 @@ -54,7 +54,7 @@ default-package-overrides: - aeson-better-errors ==0.9.1.0 - aeson-casing ==0.1.0.5 - aeson-compat ==0.3.6 - - aeson-diff ==1.1.0.3 + - aeson-diff ==1.1.0.4 - aeson-extra ==0.4.0.0 - aeson-generic-compat ==0.0.1.0 - aeson-injector ==1.0.10.0 @@ -215,7 +215,7 @@ default-package-overrides: - avwx ==0.3.0.2 - aws ==0.16 - axiom ==0.4.6 - - b9 ==0.5.32 + - b9 ==0.5.35 - backprop ==0.0.3.0 - bake ==0.5 - bank-holidays-england ==0.1.0.6 @@ -252,7 +252,7 @@ default-package-overrides: - binary-tagged ==0.1.4.2 - binary-typed ==1.0 - bindings-DSL ==1.0.23 - - bindings-GLFW ==3.1.2.2 + - bindings-GLFW ==3.1.2.3 - bindings-libzip ==1.0.1 - bioace ==0.0.1 - bioalign ==0.0.5 @@ -399,7 +399,7 @@ default-package-overrides: - cmark ==0.5.6 - cmark-highlight ==0.2.0.0 - cmark-lucid ==0.1.0.0 - - cmdargs ==0.10.17 + - cmdargs ==0.10.18 - code-builder ==0.1.3 - code-page ==0.1.3 - codo-notation ==0.5.2 @@ -763,13 +763,13 @@ default-package-overrides: - ghc-events ==0.6.0 - ghc-exactprint ==0.5.5.0 - ghc-heap-view ==0.5.10 - - ghcid ==0.6.6 + - ghcid ==0.6.7 - ghcjs-base-stub ==0.1.0.4 - ghcjs-codemirror ==0.0.0.1 - ghcjs-perch ==0.3.3.2 - ghc-paths ==0.1.0.9 - ghc-prof ==1.4.0.2 - - ghc-syb-utils ==0.2.3.2 + - ghc-syb-utils ==0.2.3.3 - ghc-tcplugins-extra ==0.2.1 - ghc-typelits-extra ==0.2.3 - ghc-typelits-knownnat ==0.3.1 @@ -916,7 +916,7 @@ default-package-overrides: - gogol-youtube-reporting ==0.3.0 - google-cloud ==0.0.4 - google-oauth2-jwt ==0.2.2 - - GPipe ==2.2.1 + - GPipe ==2.2.3 - GPipe-GLFW ==1.4.1.1 - gpolyline ==0.1.0.1 - graph-core ==0.3.0.0 @@ -997,7 +997,7 @@ default-package-overrides: - haskell-tools-rewrite ==0.8.1.0 - haskintex ==0.7.0.1 - hasmin ==0.3.2.4 - - hasql ==0.19.18.1 + - hasql ==0.19.18.2 - hasql-migration ==0.1.3 - hasql-pool ==0.4.1 - hasql-transaction ==0.5 @@ -1033,7 +1033,7 @@ default-package-overrides: - hexml ==0.3.2 - hexpat ==0.20.13 - hexstring ==0.11.1 - - hformat ==0.3.0.0 + - hformat ==0.3.1.0 - hfsevents ==0.1.6 - hid ==0.2.2 - hidapi ==0.1.4 @@ -1057,7 +1057,7 @@ default-package-overrides: - hlint ==2.0.9 - hmatrix ==0.18.0.0 - hmatrix-gsl ==0.18.0.1 - - hmatrix-gsl-stats ==0.4.1.6 + - hmatrix-gsl-stats ==0.4.1.7 - hmatrix-special ==0.4.0.1 - hmpfr ==0.4.3 - hoauth2 ==1.3.0 @@ -1272,7 +1272,7 @@ default-package-overrides: - jwt ==0.7.2 - kan-extensions ==5.0.2 - kansas-comet ==0.4 - - katip ==0.5.0.1 + - katip ==0.5.0.2 - kawhi ==0.3.0 - kdt ==0.2.4 - keter ==1.4.3.2 @@ -1339,7 +1339,7 @@ default-package-overrides: - linked-list-with-iterator ==0.1.1.0 - linux-file-extents ==0.2.0.0 - linux-namespaces ==0.1.2.0 - - List ==0.6.0 + - List ==0.6.1 - list-fusion-probe ==0.1.0.6 - ListLike ==4.5.1 - list-prompt ==0.1.1.0 @@ -1381,7 +1381,7 @@ default-package-overrides: - markdown-unlit ==0.4.0 - markov-chain ==0.0.3.4 - markup ==3.1.0 - - marvin ==0.2.3 + - marvin ==0.2.5 - marvin-interpolate ==1.1.2 - mathexpr ==0.3.0.0 - math-functions ==0.2.1.0 @@ -1491,7 +1491,7 @@ default-package-overrides: - mysql ==0.1.4 - mysql-haskell ==0.8.0.0 - mysql-haskell-openssl ==0.8.0.0 - - mysql-simple ==0.4.2.0 + - mysql-simple ==0.4.3 - nagios-check ==0.3.2 - names-th ==0.2.0.3 - nano-erl ==0.1.0.1 @@ -1650,7 +1650,7 @@ default-package-overrides: - pinboard ==0.9.12.5 - pinch ==0.3.2.0 - pinchot ==0.24.0.0 - - pipes ==4.3.4 + - pipes ==4.3.5 - pipes-attoparsec ==0.5.1.5 - pipes-bytestring ==2.1.6 - pipes-cacophony ==0.5.0 @@ -1736,8 +1736,8 @@ default-package-overrides: - prompt ==0.1.1.2 - protobuf ==0.2.1.1 - protobuf-simple ==0.1.0.4 - - protocol-buffers ==2.4.3 - - protocol-buffers-descriptor ==2.4.3 + - protocol-buffers ==2.4.4 + - protocol-buffers-descriptor ==2.4.4 - proto-lens ==0.2.1.0 - proto-lens-arbitrary ==0.1.1.1 - proto-lens-combinators ==0.1.0.7 @@ -1911,7 +1911,7 @@ default-package-overrides: - servant-auth-cookie ==0.5.0.5 - servant-blaze ==0.7.1 - servant-cassava ==0.9 - - servant-checked-exceptions ==0.4.0.0 + - servant-checked-exceptions ==0.4.1.0 - servant-client ==0.11 - servant-docs ==0.11 - servant-elm ==0.4.0.1 @@ -1972,7 +1972,7 @@ default-package-overrides: - smtp-mail ==0.1.4.6 - snap-blaze ==0.2.1.5 - snap-core ==1.0.3.1 - - snap-server ==1.0.3.1 + - snap-server ==1.0.3.3 - snowflake ==0.1.1.1 - snowtify ==0.1.0.3 - soap ==0.2.3.5 @@ -2074,7 +2074,7 @@ default-package-overrides: - SVGFonts ==1.6.0.2 - svg-tree ==0.6.2 - swagger ==0.3.0 - - swagger2 ==2.1.5 + - swagger2 ==2.1.6 - syb ==0.7 - symbol ==0.2.4 - symengine ==0.1.2.0 @@ -2178,7 +2178,7 @@ default-package-overrides: - thread-local-storage ==0.1.1 - threads ==0.5.1.5 - threepenny-editors ==0.4.1 - - threepenny-gui ==0.8.1.0 + - threepenny-gui ==0.8.2.0 - threepenny-gui-flexbox ==0.4.2 - th-reify-compat ==0.0.1.2 - th-reify-many ==0.1.8 @@ -2207,7 +2207,7 @@ default-package-overrides: - tls ==1.3.11 - tls-debug ==0.4.4 - tls-session-manager ==0.0.0.1 - - tmp-postgres ==0.1.0.8 + - tmp-postgres ==0.1.1.0 - token-bucket ==0.1.0.1 - torrent ==10000.1.1 - tostring ==0.2.1.1 diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index 6b0eb8c70025..91e95de94af5 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -227,6 +227,12 @@ self: super: builtins.intersectAttrs super { # /homeless-shelter. Disabled. purescript = dontCheck super.purescript; + # https://github.com/haskell-foundation/foundation/pull/412 + foundation = + if pkgs.stdenv.isDarwin + then dontCheck super.foundation + else super.foundation; + # Hardcoded include path poppler = overrideCabal super.poppler (drv: { postPatch = '' diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 3399ce8dd9b2..d8c2d47374a3 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -1419,12 +1419,12 @@ self: { ({ mkDerivation, aeson, attoparsec, base, binary, BiobaseTypes , BiobaseXNA, bytestring, cereal, containers, deepseq, directory , filepath, PrimitiveArray, split, tasty, tasty-quickcheck - , tasty-silver, tasty-th, vector, vector-th-unbox + , tasty-silver, tasty-th, text, vector, vector-th-unbox }: mkDerivation { pname = "BiobaseBlast"; - version = "0.2.0.0"; - sha256 = "0x4skz0akhhxplwk7v7jnyfgih4iwv8p5lkfh2cn1dm79bkbyj53"; + version = "0.2.1.0"; + sha256 = "1vrdnb8mjl6r02b37w3r25pf6kxn97w7zya148qpnlfgc2ffa23a"; libraryHaskellDepends = [ aeson attoparsec base binary BiobaseTypes BiobaseXNA bytestring cereal containers deepseq directory PrimitiveArray vector @@ -1432,7 +1432,7 @@ self: { ]; testHaskellDepends = [ base bytestring containers filepath split tasty tasty-quickcheck - tasty-silver tasty-th + tasty-silver tasty-th text ]; homepage = "https://github.com/choener/BiobaseBlast"; description = "BLAST-related tools"; @@ -2608,6 +2608,33 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "Cassava" = callPackage + ({ mkDerivation, array, attoparsec, base, bytestring + , bytestring-builder, containers, deepseq, hashable, HUnit, Only + , QuickCheck, quickcheck-instances, scientific, test-framework + , test-framework-hunit, test-framework-quickcheck2, text + , unordered-containers, vector + }: + mkDerivation { + pname = "Cassava"; + version = "0.5.1.0"; + sha256 = "1z9y8vzsb0qxfx72w0nb77n0ibha48dv4sg3wv02xrrbz95nwlrh"; + revision = "1"; + editedCabalFile = "1ijb77wqccqgjq0g04m3rk3iygm6hwbmrc50svah19vpl3mkz102"; + libraryHaskellDepends = [ + array attoparsec base bytestring bytestring-builder containers + deepseq hashable Only scientific text unordered-containers vector + ]; + testHaskellDepends = [ + attoparsec base bytestring hashable HUnit QuickCheck + quickcheck-instances scientific test-framework test-framework-hunit + test-framework-quickcheck2 text unordered-containers vector + ]; + homepage = "https://github.com/hvr/cassava"; + description = "A CSV parsing and encoding library"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "Catana" = callPackage ({ mkDerivation, base, mtl }: mkDerivation { @@ -6064,25 +6091,6 @@ self: { }: mkDerivation { pname = "GPipe"; - version = "2.2.1"; - sha256 = "1g5712apfv1jzi12shpzfp16274gfbjgf7r49fp1dawxnj8j734g"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base Boolean containers exception-transformers gl hashtables linear - transformers - ]; - homepage = "https://github.com/tobbebex/GPipe-Core#readme"; - description = "Typesafe functional GPU graphics programming"; - license = stdenv.lib.licenses.mit; - hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; - }) {}; - - "GPipe_2_2_3" = callPackage - ({ mkDerivation, base, Boolean, containers, exception-transformers - , gl, hashtables, linear, transformers - }: - mkDerivation { - pname = "GPipe"; version = "2.2.3"; sha256 = "19bn3471h6p7a34l3ydgyvqn118f4wb6l3djldlx0cvrga6wmfkp"; enableSeparateDataOutput = true; @@ -6093,7 +6101,7 @@ self: { homepage = "https://github.com/tobbebex/GPipe-Core#readme"; description = "Typesafe functional GPU graphics programming"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; + hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; }) {}; "GPipe-Collada" = callPackage @@ -10793,13 +10801,11 @@ self: { ({ mkDerivation, base, QuickCheck }: mkDerivation { pname = "KdTree"; - version = "0.2.1"; - sha256 = "1vj1kbhyqh0xzwyr9v6fdyakx508vbf6n494z81yndisp115qi61"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base ]; - executableHaskellDepends = [ QuickCheck ]; - homepage = "https://github.com/ijt/kdtree"; + version = "0.2.2.1"; + sha256 = "056396l7rj2c8lxzm53vf9dq8jc5wqhb3lzhbxif1p6fapd6whcf"; + libraryHaskellDepends = [ base QuickCheck ]; + testHaskellDepends = [ base QuickCheck ]; + homepage = "https://github.com/binarysunrise-io/kdtree"; description = "KdTree, for efficient search in K-dimensional point clouds"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -11424,20 +11430,20 @@ self: { ({ mkDerivation, base, transformers }: mkDerivation { pname = "List"; - version = "0.6.0"; - sha256 = "12cql8hrahbv8srp2h0g1mwh0pc56w0dxmi2zxvdqbc0p0v25ph3"; + version = "0.6.1"; + sha256 = "0ar4bpfv9nqc3bdwg6rlcnwr5si2df38ch8m2wnnl0346yzvmjni"; libraryHaskellDepends = [ base transformers ]; - homepage = "http://github.com/yairchu/generator/tree"; + homepage = "http://github.com/yairchu/generator"; description = "List monad transformer and class"; license = stdenv.lib.licenses.bsd3; }) {}; - "List_0_6_1" = callPackage + "List_0_6_2" = callPackage ({ mkDerivation, base, transformers }: mkDerivation { pname = "List"; - version = "0.6.1"; - sha256 = "0ar4bpfv9nqc3bdwg6rlcnwr5si2df38ch8m2wnnl0346yzvmjni"; + version = "0.6.2"; + sha256 = "0y5qk6pzpcha01pa9133qgmmk9nkgjqxaxlg04993i9g43hjpff4"; libraryHaskellDepends = [ base transformers ]; homepage = "http://github.com/yairchu/generator"; description = "List monad transformer and class"; @@ -12584,6 +12590,27 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "MusicBrainz_0_3_1" = callPackage + ({ mkDerivation, aeson, base, bytestring, conduit, conduit-extra + , HTTP, http-conduit, http-types, monad-control, resourcet, text + , time, time-locale-compat, transformers, vector, xml-conduit + , xml-types + }: + mkDerivation { + pname = "MusicBrainz"; + version = "0.3.1"; + sha256 = "1zgk2ms1a5zd6wndc41z3f8p2pfygiijpijxbjhr1fqwb2bzs61m"; + libraryHaskellDepends = [ + aeson base bytestring conduit conduit-extra HTTP http-conduit + http-types monad-control resourcet text time time-locale-compat + transformers vector xml-conduit xml-types + ]; + homepage = "http://floss.scru.org/hMusicBrainz"; + description = "interface to MusicBrainz XML2 and JSON web services"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "MusicBrainz-libdiscid" = callPackage ({ mkDerivation, base, containers, vector }: mkDerivation { @@ -15860,6 +15887,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "SVGFonts_1_6_0_3" = callPackage + ({ mkDerivation, attoparsec, base, blaze-markup, blaze-svg + , bytestring, cereal, cereal-vector, containers, data-default-class + , diagrams-core, diagrams-lib, directory, parsec, split, text + , tuple, vector, xml + }: + mkDerivation { + pname = "SVGFonts"; + version = "1.6.0.3"; + sha256 = "11sqycvvsg9avxqh3z82x3wllhy6a9c0d36qzm2w6w4hg5iqi3xw"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + attoparsec base blaze-markup blaze-svg bytestring cereal + cereal-vector containers data-default-class diagrams-core + diagrams-lib directory parsec split text tuple vector xml + ]; + description = "Fonts from the SVG-Font format"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "SVGPath" = callPackage ({ mkDerivation, base, parsec }: mkDerivation { @@ -19693,20 +19741,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "accelerate_1_1_0_0" = callPackage - ({ mkDerivation, base, base-orphans, containers, deepseq, directory - , exceptions, fclabels, filepath, ghc-prim, hashable, hashtables - , mtl, pretty, template-haskell, time, transformers, unique, unix - , unordered-containers + "accelerate_1_1_1_0" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, base-orphans, containers + , deepseq, directory, exceptions, fclabels, filepath, ghc-prim + , hashable, hashtables, mtl, template-haskell, time, transformers + , unique, unix, unordered-containers }: mkDerivation { pname = "accelerate"; - version = "1.1.0.0"; - sha256 = "02nv7h7qfayw5aggh2jhaccnrx2lq0f0h3aqacw8ml22asffbzj8"; + version = "1.1.1.0"; + sha256 = "1qcfhaz48fmn2di5g65mmwmqhvgl194k922nps5qa3mx5d3q5x54"; libraryHaskellDepends = [ - base base-orphans containers deepseq directory exceptions fclabels - filepath ghc-prim hashable hashtables mtl pretty template-haskell - time transformers unique unix unordered-containers + ansi-wl-pprint base base-orphans containers deepseq directory + exceptions fclabels filepath ghc-prim hashable hashtables mtl + template-haskell time transformers unique unix unordered-containers ]; homepage = "https://github.com/AccelerateHS/accelerate/"; description = "An embedded language for accelerated array processing"; @@ -19773,8 +19821,8 @@ self: { }: mkDerivation { pname = "accelerate-blas"; - version = "0.1.0.0"; - sha256 = "0jxcq97z75pqdh9f18lsz4pih693n5ffcx02aa752s6y3qv2s2kb"; + version = "0.1.0.1"; + sha256 = "0rjcga34ipml402gikwvdxnpdjrmh9vnhd8wvcv109gs1ih6pafd"; libraryHaskellDepends = [ accelerate accelerate-llvm accelerate-llvm-native accelerate-llvm-ptx base blas-hs bytestring containers cublas cuda @@ -21438,34 +21486,6 @@ self: { }: mkDerivation { pname = "aeson-diff"; - version = "1.1.0.3"; - sha256 = "13fbb270zaljgimy6pnyy2n8iwcxnb2pgs9b55qr94k3jnrjnl0g"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring edit-distance-vector hashable mtl scientific - text unordered-containers vector - ]; - executableHaskellDepends = [ - aeson base bytestring optparse-applicative text - ]; - testHaskellDepends = [ - aeson base bytestring directory doctest filepath Glob hlint - QuickCheck quickcheck-instances text unordered-containers vector - ]; - homepage = "https://github.com/thsutton/aeson-diff"; - description = "Extract and apply patches to JSON documents"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "aeson-diff_1_1_0_4" = callPackage - ({ mkDerivation, aeson, base, bytestring, directory, doctest - , edit-distance-vector, filepath, Glob, hashable, hlint, mtl - , optparse-applicative, QuickCheck, quickcheck-instances - , scientific, text, unordered-containers, vector - }: - mkDerivation { - pname = "aeson-diff"; version = "1.1.0.4"; sha256 = "03lbghmivvmgj326ha3rxqldd73nyq88hyjigkb09nrd8vwy9wc7"; isLibrary = true; @@ -21484,7 +21504,6 @@ self: { homepage = "https://github.com/thsutton/aeson-diff"; description = "Extract and apply patches to JSON documents"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "aeson-extra" = callPackage @@ -22376,8 +22395,8 @@ self: { }: mkDerivation { pname = "aivika"; - version = "5.2"; - sha256 = "19d9bshjf5sivgzcbb0yl00i1z1kq3jr6xr7gddikh9wl0flnp9r"; + version = "5.3"; + sha256 = "0apx1i3v5p416wa9d0s8qacras3p137f9djbyv5miz5n7yhmlfi3"; libraryHaskellDepends = [ array base binary containers deepseq mtl mwc-random random vector ]; @@ -22427,8 +22446,8 @@ self: { }: mkDerivation { pname = "aivika-experiment"; - version = "5.0"; - sha256 = "1bcmkpzdmca0xcnvmbvsb5g0gsrxbrhf7lc3nig472w0pxa0xhg9"; + version = "5.1"; + sha256 = "1zqw54pinc2cav0svhiwzqkw5s90sdj6sdxkaagjanz0myp4pf1w"; libraryHaskellDepends = [ aivika aivika-transformers base containers directory filepath mtl network-uri parallel-io split @@ -22440,14 +22459,15 @@ self: { "aivika-experiment-cairo" = callPackage ({ mkDerivation, aivika-experiment, aivika-experiment-chart, base - , Chart, Chart-cairo + , Chart, Chart-cairo, colour, lens }: mkDerivation { pname = "aivika-experiment-cairo"; - version = "5.0"; - sha256 = "1ybynnr9yiv9vi3v1zww9hlf7klm6kggs56basgpn7lzv5qdaz07"; + version = "5.1"; + sha256 = "0ya9zl73zjq6xnr5b6a15jcw9dvsjhlj2xz0xlc402v96siwb690"; libraryHaskellDepends = [ aivika-experiment aivika-experiment-chart base Chart Chart-cairo + colour lens ]; homepage = "http://www.aivikasoft.com"; description = "Cairo-based charting backend for the Aivika simulation library"; @@ -22461,8 +22481,8 @@ self: { }: mkDerivation { pname = "aivika-experiment-chart"; - version = "5.0"; - sha256 = "0hmdb6bk8iy3y4dq5pkf1yqwgxl3mjyhl4lqjj0pz24bxxwlg33z"; + version = "5.1"; + sha256 = "1g6ax9a8mywqwhazlx888zrapnl4m2pcar1kjbjxga0j9p8qxrpl"; libraryHaskellDepends = [ aivika aivika-experiment array base Chart colour containers data-default-class filepath lens mtl split @@ -22474,15 +22494,15 @@ self: { "aivika-experiment-diagrams" = callPackage ({ mkDerivation, aivika-experiment, aivika-experiment-chart, base - , Chart, Chart-diagrams, containers, filepath + , Chart, Chart-diagrams, colour, containers, filepath, lens }: mkDerivation { pname = "aivika-experiment-diagrams"; - version = "5.0"; - sha256 = "013l4zp8pxz34xjkl7q9hwy4sk75k8gdwhg5kc5hsmw9nm47xa72"; + version = "5.1"; + sha256 = "13vgcm5dmqml9751wylvshxvgx8bgki2ymfp87l1llrp8qfxy95j"; libraryHaskellDepends = [ aivika-experiment aivika-experiment-chart base Chart Chart-diagrams - containers filepath + colour containers filepath lens ]; homepage = "http://www.aivikasoft.com"; description = "Diagrams-based charting backend for the Aivika simulation library"; @@ -22495,8 +22515,8 @@ self: { }: mkDerivation { pname = "aivika-gpss"; - version = "0.3"; - sha256 = "00pmkhyyk12di9kc1z9zsab44sprra9j5l0byb0h74526jrrcq2b"; + version = "0.4"; + sha256 = "0yrpbq0ppck1z9d7whzfknia16sac6jpr80mi8bw6g65hjcg3z1g"; libraryHaskellDepends = [ aivika aivika-transformers base containers hashable mtl unordered-containers @@ -22545,8 +22565,8 @@ self: { }: mkDerivation { pname = "aivika-transformers"; - version = "5.2"; - sha256 = "1mz5wa66xazhh5x2wm01d7ixqg82zxls0ggkbixcjdm23a0560c1"; + version = "5.3"; + sha256 = "08c8hkc1sbq08dsj25sb6ik9nq0insv0k8j42klbpgzmmc4pjvxd"; libraryHaskellDepends = [ aivika array base containers mtl mwc-random random vector ]; @@ -25119,7 +25139,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "amqp_0_17_0" = callPackage + "amqp_0_18_1" = callPackage ({ mkDerivation, base, binary, bytestring, clock, connection , containers, data-binary-ieee754, hspec, hspec-expectations , monad-control, network, network-uri, split, stm, text, vector @@ -25127,8 +25147,8 @@ self: { }: mkDerivation { pname = "amqp"; - version = "0.17.0"; - sha256 = "18g63nx7ksbqs45nr3nfw0hii9niw0bw5s35vk4xnchhj9f3ibwr"; + version = "0.18.1"; + sha256 = "0j728d7q013gcqv0m6vpm401hnpbmzzb3i6br8kpxybdjzmy4y26"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -25176,8 +25196,8 @@ self: { }: mkDerivation { pname = "amqp-utils"; - version = "0.2.1.4"; - sha256 = "01q9n53p2797hzsyl0y4w9fi99xhq4n2dad8q8d7a884slv73q8x"; + version = "0.2.1.5"; + sha256 = "1r0h93nivl0pvl6mppz18jpi3csar37ii867a2yfg7g4a5lra3hf"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -25362,6 +25382,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "android-activity" = callPackage + ({ mkDerivation, base, data-default }: + mkDerivation { + pname = "android-activity"; + version = "0.1"; + sha256 = "07mgmpcwj7xi3ibmlcz45l645s5cbfnkr1brlhrzbnbyx72x7dr6"; + libraryHaskellDepends = [ base data-default ]; + homepage = "https://github.com/obsidiansystems/android-activity"; + description = "Turn regular Haskell programs into Android Activities"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "android-lint-summary" = callPackage ({ mkDerivation, base, basic-prelude, data-default, directory , filemanip, hspec, hxt, lens, mtl, optparse-applicative @@ -25915,14 +25947,16 @@ self: { }) {inherit (pkgs) openssl;}; "apecs" = callPackage - ({ mkDerivation, base, containers, criterion, linear, mtl - , QuickCheck, vector + ({ mkDerivation, async, base, containers, criterion, linear, mtl + , QuickCheck, template-haskell, vector }: mkDerivation { pname = "apecs"; - version = "0.2.1.1"; - sha256 = "1611vwvp5ldminjcj59s4xhvgcrla1n4zk082mh0fbpil4ww2ad9"; - libraryHaskellDepends = [ base containers mtl vector ]; + version = "0.2.4.0"; + sha256 = "0jfwg96hkymzh3xqzk8hw0zwszxb4l159wl4kdqpf25wbqpz4qr2"; + libraryHaskellDepends = [ + async base containers mtl template-haskell vector + ]; testHaskellDepends = [ base containers QuickCheck vector ]; benchmarkHaskellDepends = [ base criterion linear ]; homepage = "https://github.com/jonascarpay/apecs#readme"; @@ -27938,11 +27972,11 @@ self: { pname = "ast-monad"; version = "0.1.0.0"; sha256 = "038cvblhhlcsv9id2rcb26q4lwvals3xj45j9jy6fb69jm5mzh0i"; - revision = "1"; - editedCabalFile = "1rvdxx5gl22jp528z7b75fwm1dhfsdx2hhvwvfaw3wc59a66gmml"; + revision = "2"; + editedCabalFile = "1l5adjj7bianjclqzgvi4qhlb6lvb7v67qfqx2ghk3arq8ifghwj"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; - homepage = "https://github.com/mkdag/ast-monad#readme"; + homepage = "https://github.com/mouri111/ast-monad#readme"; description = "A library for constructing AST by using do-notation"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -27953,9 +27987,11 @@ self: { pname = "ast-monad-json"; version = "0.1.0.1"; sha256 = "0a0pzcma574rrx6klfgk16y6ng22glwj1l5c3rz5w32a22ildfz6"; + revision = "1"; + editedCabalFile = "05gavjyjxfmw8q8l4dvx2p5vxaszg4kbivknn3pg5495bgd8br9s"; libraryHaskellDepends = [ ast-monad base text ]; testHaskellDepends = [ ast-monad base hspec text ]; - homepage = "https://github.com/mkdag/ast-monad-json#readme"; + homepage = "https://github.com/mouri111/ast-monad-json#readme"; description = "A library for writing JSON"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -28830,6 +28866,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "attoparsec-ip" = callPackage + ({ mkDerivation, attoparsec, base, ip }: + mkDerivation { + pname = "attoparsec-ip"; + version = "0.0.0"; + sha256 = "08hgjmi9nlgg9qavsh5sl0s52yzh7vk6c933dgx9k16vk456r2y4"; + libraryHaskellDepends = [ attoparsec base ip ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/athanclark/attoparsec-ip#readme"; + description = "Parse IP data types with attoparsec"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "attoparsec-iso8601" = callPackage ({ mkDerivation, attoparsec, base, base-compat, text, time }: mkDerivation { @@ -28875,6 +28924,23 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "attoparsec-path" = callPackage + ({ mkDerivation, attoparsec, base, path, QuickCheck + , quickcheck-instances, text + }: + mkDerivation { + pname = "attoparsec-path"; + version = "0.0.0.1"; + sha256 = "035n430iwqkfkxpphgn8xjd3h5qav8dwd1gm4a3v3z8h49i2cwfh"; + libraryHaskellDepends = [ attoparsec base path text ]; + testHaskellDepends = [ + attoparsec base QuickCheck quickcheck-instances text + ]; + homepage = "https://github.com/athanclark/attoparsec-path#readme"; + description = "Convenience bindings between path and attoparsec"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "attoparsec-text" = callPackage ({ mkDerivation, array, attoparsec, base, containers, text }: mkDerivation { @@ -28958,15 +29024,15 @@ self: { }) {}; "attoparsec-uri" = callPackage - ({ mkDerivation, attoparsec, base, bytedump, n-tuple, strict, text - , vector + ({ mkDerivation, attoparsec, attoparsec-ip, base, bytedump, ip + , strict, text, vector }: mkDerivation { pname = "attoparsec-uri"; - version = "0.0.1"; - sha256 = "0bjfk1ljm16kzb3415973w5z3zhjbb2yyphwr6v3givszgwryq6g"; + version = "0.0.2"; + sha256 = "096w3zb9a0fcqcnzl7lb9n27hgbaj6f5n93vll7rih972657h0my"; libraryHaskellDepends = [ - attoparsec base bytedump n-tuple strict text vector + attoparsec attoparsec-ip base bytedump ip strict text vector ]; homepage = "https://github.com/athanclark/attoparsec-uri#readme"; description = "URI parser / printer using attoparsec"; @@ -29628,8 +29694,8 @@ self: { }: mkDerivation { pname = "avro"; - version = "0.1.0.1"; - sha256 = "0pn3pll7yjkfiqllndsn5mcm07my6mgjzd7amncvl3pykw75w0jq"; + version = "0.2.0.0"; + sha256 = "1bs2fpka2pz58hj1x8pv27vm2sdap7rp83fasali228iigvlp9cc"; libraryHaskellDepends = [ aeson array base base16-bytestring binary bytestring containers data-binary-ieee754 entropy fail hashable mtl pure-zlib scientific @@ -29641,7 +29707,7 @@ self: { scientific semigroups tagged template-haskell text unordered-containers vector ]; - homepage = "https://github.com/GaloisInc/avro.git"; + homepage = "https://github.com/haskell-works/hw-haskell-avro.git"; description = "Avro serialization support for Haskell"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -29761,6 +29827,44 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "aws_0_17_1" = callPackage + ({ mkDerivation, aeson, attoparsec, base, base16-bytestring + , base64-bytestring, blaze-builder, byteable, bytestring + , case-insensitive, cereal, conduit, conduit-combinators + , conduit-extra, containers, cryptohash, data-default, directory + , errors, filepath, http-client, http-client-tls, http-conduit + , http-types, lifted-base, monad-control, mtl, network, old-locale + , QuickCheck, quickcheck-instances, resourcet, safe, scientific + , tagged, tasty, tasty-hunit, tasty-quickcheck, text, time + , transformers, transformers-base, unordered-containers + , utf8-string, vector, xml-conduit + }: + mkDerivation { + pname = "aws"; + version = "0.17.1"; + sha256 = "1q4qh58vj8447a4fl88n3nkpdc4yv293qsh02w6zvszd6ch61yh7"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson attoparsec base base16-bytestring base64-bytestring + blaze-builder byteable bytestring case-insensitive cereal conduit + conduit-extra containers cryptohash data-default directory filepath + http-conduit http-types lifted-base monad-control mtl network + old-locale resourcet safe scientific tagged text time transformers + unordered-containers utf8-string vector xml-conduit + ]; + testHaskellDepends = [ + aeson base bytestring conduit-combinators errors http-client + http-client-tls http-types lifted-base monad-control mtl QuickCheck + quickcheck-instances resourcet tagged tasty tasty-hunit + tasty-quickcheck text time transformers transformers-base + ]; + homepage = "http://github.com/aristidb/aws"; + description = "Amazon Web Services (AWS) for Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "aws-cloudfront-signer" = callPackage ({ mkDerivation, asn1-encoding, asn1-types, base, base64-bytestring , bytestring, crypto-pubkey-types, RSA, time @@ -30425,39 +30529,6 @@ self: { }: mkDerivation { pname = "b9"; - version = "0.5.32"; - sha256 = "0d3ymgk83kfxzfd0a9x97sjcax4vd27p2dskpfiykqsn7wgylhhw"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson async base bifunctors binary boxes bytestring conduit - conduit-extra ConfigFile directory filepath free hashable mtl - parallel parsec pretty pretty-show process QuickCheck random - semigroups syb template text time transformers unordered-containers - vector yaml - ]; - executableHaskellDepends = [ - base bytestring directory optparse-applicative - ]; - testHaskellDepends = [ - aeson base bytestring hspec hspec-expectations QuickCheck - semigroups text unordered-containers vector yaml - ]; - homepage = "https://github.com/sheyll/b9-vm-image-builder"; - description = "A tool and library for building virtual machine images"; - license = stdenv.lib.licenses.mit; - }) {}; - - "b9_0_5_35" = callPackage - ({ mkDerivation, aeson, async, base, bifunctors, binary, boxes - , bytestring, conduit, conduit-extra, ConfigFile, directory - , filepath, free, hashable, hspec, hspec-expectations, mtl - , optparse-applicative, parallel, parsec, pretty, pretty-show - , process, QuickCheck, random, semigroups, syb, template, text - , time, transformers, unordered-containers, vector, yaml - }: - mkDerivation { - pname = "b9"; version = "0.5.35"; sha256 = "11j2mr03hn9xz7dq1p7kr448mdj1dva360xf6n7qmq3nq4vrl1av"; isLibrary = true; @@ -30479,7 +30550,6 @@ self: { homepage = "https://github.com/sheyll/b9-vm-image-builder"; description = "A tool and library for building virtual machine images"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "babl" = callPackage @@ -33035,31 +33105,6 @@ self: { }: mkDerivation { pname = "bindings-GLFW"; - version = "3.1.2.2"; - sha256 = "1j9za3fikmy9x6iaypa7fn5hypnavhs58y4s1ycgd80cbfiqawsk"; - libraryHaskellDepends = [ base bindings-DSL template-haskell ]; - librarySystemDepends = [ - libX11 libXcursor libXext libXfixes libXi libXinerama libXrandr - libXxf86vm mesa - ]; - testHaskellDepends = [ - base HUnit test-framework test-framework-hunit - ]; - description = "Low-level bindings to GLFW OpenGL library"; - license = stdenv.lib.licenses.bsd3; - }) {inherit (pkgs.xorg) libX11; inherit (pkgs.xorg) libXcursor; - inherit (pkgs.xorg) libXext; inherit (pkgs.xorg) libXfixes; - inherit (pkgs.xorg) libXi; inherit (pkgs.xorg) libXinerama; - inherit (pkgs.xorg) libXrandr; inherit (pkgs.xorg) libXxf86vm; - inherit (pkgs) mesa;}; - - "bindings-GLFW_3_1_2_3" = callPackage - ({ mkDerivation, base, bindings-DSL, HUnit, libX11, libXcursor - , libXext, libXfixes, libXi, libXinerama, libXrandr, libXxf86vm - , mesa, template-haskell, test-framework, test-framework-hunit - }: - mkDerivation { - pname = "bindings-GLFW"; version = "3.1.2.3"; sha256 = "1xmmwxbjpxwndiacrh2mk3lih6cs8d83ax07vg5sgyp5d7qigvik"; libraryHaskellDepends = [ base bindings-DSL template-haskell ]; @@ -33072,7 +33117,6 @@ self: { ]; description = "Low-level bindings to GLFW OpenGL library"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs.xorg) libX11; inherit (pkgs.xorg) libXcursor; inherit (pkgs.xorg) libXext; inherit (pkgs.xorg) libXfixes; inherit (pkgs.xorg) libXi; inherit (pkgs.xorg) libXinerama; @@ -33309,11 +33353,11 @@ self: { ({ mkDerivation, base, bindings-DSL, gpgme }: mkDerivation { pname = "bindings-gpgme"; - version = "0.1.6"; - sha256 = "0mwlb1fk852pk6an3ay9mgxmxqf6f6bzm965agm80yhr2ab3iqhq"; + version = "0.1.7"; + sha256 = "0jz6v52alvczvmwlik0qvw3bfilhzpyp9wd1g92214j2iblyjk8i"; libraryHaskellDepends = [ base bindings-DSL ]; librarySystemDepends = [ gpgme ]; - homepage = "http://bitbucket.org/mauricio/bindings-gpgme"; + homepage = "https://github.com/jwiegley/bindings-dsl"; description = "Project bindings-* raw interface to gpgme"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; @@ -34929,6 +34973,32 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "blank-canvas_0_6_1" = callPackage + ({ mkDerivation, aeson, base, base-compat, base64-bytestring + , bytestring, colour, containers, data-default-class, directory + , http-types, kansas-comet, mime-types, process, scotty, shake, stm + , text, text-show, time, transformers, unix, vector, wai, wai-extra + , warp + }: + mkDerivation { + pname = "blank-canvas"; + version = "0.6.1"; + sha256 = "06jsbqbd67hyb1k2yv0iqn11rhqhycl1c9afrnmwh05bic9wsdf6"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + aeson base base-compat base64-bytestring bytestring colour + containers data-default-class http-types kansas-comet mime-types + scotty stm text text-show transformers vector wai wai-extra warp + ]; + testHaskellDepends = [ + base containers directory process shake stm text time unix vector + ]; + homepage = "https://github.com/ku-fpg/blank-canvas/wiki"; + description = "HTML5 Canvas Graphics Library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "blas" = callPackage ({ mkDerivation, base, ieee, QuickCheck, storable-complex }: mkDerivation { @@ -36144,15 +36214,15 @@ self: { }: mkDerivation { pname = "boomange"; - version = "0.1.3.3"; - sha256 = "0am2b5f6a47khka31mxynl9j2fisa6zyfk3ca8yna02hdkw3rlf6"; + version = "0.1.3.5"; + sha256 = "017klwzi30qmrvxy19i8swnmgzxfimq9q647kvw001yx9nsf204n"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; executableHaskellDepends = [ base containers descrilo directory filepath simtreelo ]; - description = "A Bookmarks manager with a HTML generator"; + description = "A bookmarks manager with an HTML generator"; license = stdenv.lib.licenses.gpl3; }) {}; @@ -36649,7 +36719,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "brick_0_24_2" = callPackage + "brick_0_25" = callPackage ({ mkDerivation, base, containers, contravariant, data-clist , deepseq, dlist, microlens, microlens-mtl, microlens-th, stm , template-haskell, text, text-zipper, transformers, vector, vty @@ -36657,8 +36727,8 @@ self: { }: mkDerivation { pname = "brick"; - version = "0.24.2"; - sha256 = "162p1sgiq25zymjnvjzkbblwwl7544ph7y8kpa1x07w7x9bq2jw3"; + version = "0.25"; + sha256 = "0yj1lw8a82xw5kkaqq5dhffzw8gcjb8cb1wjbsyc3hgcscy9vn9m"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -36723,10 +36793,8 @@ self: { }: mkDerivation { pname = "brittany"; - version = "0.8.0.2"; - sha256 = "001nfcdj366avjcjz199s630v3z6r9mrj22b16qcixnwm3pzpxr7"; - revision = "1"; - editedCabalFile = "16ks5wxyjlgh7krvkr072pkhj4f5sa8bpnw1y15swx5d8xinp40w"; + version = "0.8.0.3"; + sha256 = "0a468lq4gnhax4kfrwi2ligc4mjbrs0jqxgh1f4j86ql53k4mpg9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -39449,6 +39517,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {inherit (pkgs) cairo;}; + "cairo_0_13_4_1" = callPackage + ({ mkDerivation, array, base, bytestring, Cabal, cairo + , gtk2hs-buildtools, mtl, text, utf8-string + }: + mkDerivation { + pname = "cairo"; + version = "0.13.4.1"; + sha256 = "04ig1v3nyiqycrh2xipmw0mynnsnf6pyr2qgk57dravaisf89s02"; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; + libraryHaskellDepends = [ + array base bytestring mtl text utf8-string + ]; + libraryPkgconfigDepends = [ cairo ]; + homepage = "http://projects.haskell.org/gtk2hs/"; + description = "Binding to the Cairo library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) cairo;}; + "cairo-appbase" = callPackage ({ mkDerivation, base, cairo, glib, gtk }: mkDerivation { @@ -42281,8 +42369,8 @@ self: { }: mkDerivation { pname = "checkmate"; - version = "0.2.0"; - sha256 = "0xa420vgyykzxphzy79qlraq36kkxdj8iqx9rhhx1rl3sz3d2ndh"; + version = "0.2.1"; + sha256 = "0ks073hppsafbg4cy021yc6pnp0p5gm15qr1067a0w0sny5z81z3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -44899,27 +44987,6 @@ self: { }: mkDerivation { pname = "cmdargs"; - version = "0.10.17"; - sha256 = "1nklhglfa83s9rd8x4j40bvnzdvd81pwdq902sv51mnfyk5a8drl"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base filepath process template-haskell transformers - ]; - executableHaskellDepends = [ - base filepath process template-haskell transformers - ]; - homepage = "https://github.com/ndmitchell/cmdargs#readme"; - description = "Command line argument processing"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "cmdargs_0_10_18" = callPackage - ({ mkDerivation, base, filepath, process, template-haskell - , transformers - }: - mkDerivation { - pname = "cmdargs"; version = "0.10.18"; sha256 = "1lnmcsf6p9yrwwz1zvrw5lbc32xpff7b70yz4ylawaflnlz6wrlh"; isLibrary = true; @@ -44933,7 +45000,6 @@ self: { homepage = "https://github.com/ndmitchell/cmdargs#readme"; description = "Command line argument processing"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "cmdargs-browser" = callPackage @@ -45059,8 +45125,8 @@ self: { }: mkDerivation { pname = "cmv"; - version = "1.0.5"; - sha256 = "12nkz10i54g7p3a3c9psizd4gjj8d3w4ylps1zwqb7anvy1nqw4c"; + version = "1.0.6"; + sha256 = "1djqw8szaq8p8mhxp4789gx5mgibdlcwhbkilzc5zcxf619pn3c1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -45724,8 +45790,8 @@ self: { }: mkDerivation { pname = "colorless"; - version = "0.0.2"; - sha256 = "0bmyiziqw4jsjf7wk0ckdvlmnrzqwhi78x3hknw8kzh6y8c0qyk9"; + version = "2.1.0"; + sha256 = "1dr8isfvwhfh3j59yrvvyjrqq17iw0qi5xapfhgv7xjsq8lw2wpx"; libraryHaskellDepends = [ aeson base bytestring containers errors exceptions lifted-async monad-control monad-logger mtl random scientific text @@ -46662,8 +46728,8 @@ self: { }: mkDerivation { pname = "composite-aeson"; - version = "0.5.2.0"; - sha256 = "12r2kkn6gxp5aj3fzdyfazi2nzgfvvk6cp9rb5y0ak2llvsh5jm4"; + version = "0.5.3.0"; + sha256 = "0pmgrdlrk4l7bmbfvsbvysa3n2h14ca919fl7cr1bg9yk2mb2s7s"; libraryHaskellDepends = [ aeson aeson-better-errors base composite-base containers contravariant generic-deriving hashable lens mmorph mtl profunctors @@ -46687,8 +46753,8 @@ self: { }: mkDerivation { pname = "composite-aeson-refined"; - version = "0.5.2.0"; - sha256 = "02kx3dsqfqwn07lxhvj6gxw4p0h5yv8r1nndzi6d8lil38rx9gap"; + version = "0.5.3.0"; + sha256 = "07ps031qnkhd5yb7w0c9y69n22npa5y9rzxy934p6x32ni5v0mvz"; libraryHaskellDepends = [ aeson-better-errors base composite-aeson mtl refined ]; @@ -46704,8 +46770,8 @@ self: { }: mkDerivation { pname = "composite-base"; - version = "0.5.2.0"; - sha256 = "1s19y7cnsk7k0hsc124xnvcj35vmdk1yqwvv15xf2qilvp3ppzxw"; + version = "0.5.3.0"; + sha256 = "0xz264i115nj2b6k74s1csi29lrszambbhy7ibz7nwqr2qs56yzw"; libraryHaskellDepends = [ base exceptions lens monad-control mtl profunctors template-haskell text transformers transformers-base vinyl @@ -46725,8 +46791,8 @@ self: { }: mkDerivation { pname = "composite-ekg"; - version = "0.5.2.0"; - sha256 = "0bymnfw5d3nzwrbmnq1jpdvvm86p7c3y7s779dlpmdcsq2wxvp92"; + version = "0.5.3.0"; + sha256 = "0fw6rsz7arndmp9d6xgvkx9vqqrv6kvhgchl0hqv4jfaxhwdv3gc"; libraryHaskellDepends = [ base composite-base ekg ekg-core lens text vinyl ]; @@ -46742,8 +46808,8 @@ self: { }: mkDerivation { pname = "composite-opaleye"; - version = "0.5.2.0"; - sha256 = "1k2h9acbk4g8rfqpg9r689k5nr8cgj385797mkca3f76xrzlxbfl"; + version = "0.5.3.0"; + sha256 = "09sjvs7bxca789pfrhgbsy2v08060mraciwl867byq3s8aq5c971"; libraryHaskellDepends = [ base bytestring composite-base lens opaleye postgresql-simple product-profunctors profunctors template-haskell text vinyl @@ -46809,8 +46875,8 @@ self: { ({ mkDerivation, base, base-prelude }: mkDerivation { pname = "compound-types"; - version = "0.1.3.1"; - sha256 = "1wihx553vgdllij40lwph5ciy8mpdls9rv7vw9sjhl3r0gmppil1"; + version = "0.1.4"; + sha256 = "1lnmlql90v66vs2dr5lqg2lzfvf7m3z8naazfzj7zdyqjf9jnpkc"; libraryHaskellDepends = [ base ]; benchmarkHaskellDepends = [ base-prelude ]; homepage = "https://github.com/nikita-volkov/compound-types"; @@ -47532,6 +47598,34 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "conduit_1_2_12_1" = callPackage + ({ mkDerivation, base, containers, criterion, deepseq, exceptions + , hspec, kan-extensions, lifted-base, mmorph, monad-control, mtl + , mwc-random, primitive, QuickCheck, resourcet, safe, split + , transformers, transformers-base, transformers-compat, vector + }: + mkDerivation { + pname = "conduit"; + version = "1.2.12.1"; + sha256 = "0zl6gflh7y36y2vypjhqx13nhkk5y3h12c1zj7kjfclrmwnvnwh0"; + libraryHaskellDepends = [ + base exceptions lifted-base mmorph monad-control mtl primitive + resourcet transformers transformers-base transformers-compat + ]; + testHaskellDepends = [ + base containers exceptions hspec mtl QuickCheck resourcet safe + split transformers + ]; + benchmarkHaskellDepends = [ + base containers criterion deepseq hspec kan-extensions mwc-random + transformers vector + ]; + homepage = "http://github.com/snoyberg/conduit"; + description = "Streaming data processing library"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "conduit-algorithms" = callPackage ({ mkDerivation, async, base, bytestring, bzlib-conduit, conduit , conduit-combinators, conduit-extra, containers, deepseq @@ -50496,8 +50590,8 @@ self: { }: mkDerivation { pname = "crdt"; - version = "0.3"; - sha256 = "12n311m8maj72hg8dvnjj1mmfas45a8iipi6sd4dq808cq5nbx7z"; + version = "0.5"; + sha256 = "11svy9z96964b9cfh2x7cnibq785vnb4v9r6jvhbakda634c61mg"; libraryHaskellDepends = [ base containers ]; testHaskellDepends = [ base containers QuickCheck tasty tasty-quickcheck @@ -52119,6 +52213,31 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "ctrie_0_2" = callPackage + ({ mkDerivation, async, atomic-primops, base, containers, criterion + , deepseq, hashable, primitive, QuickCheck, random, random-shuffle + , stm, test-framework, test-framework-quickcheck2, transformers + , unordered-containers + }: + mkDerivation { + pname = "ctrie"; + version = "0.2"; + sha256 = "0568v5m5k8dyqx5sfcr13mh1qay13m1wbcjszxiidvb5kz9sdqr0"; + libraryHaskellDepends = [ atomic-primops base hashable primitive ]; + testHaskellDepends = [ + base containers hashable QuickCheck test-framework + test-framework-quickcheck2 + ]; + benchmarkHaskellDepends = [ + async base containers criterion deepseq hashable random + random-shuffle stm transformers unordered-containers + ]; + homepage = "https://github.com/mcschroeder/ctrie"; + description = "Non-blocking concurrent map"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "cube" = callPackage ({ mkDerivation, base, bytestring, cereal, containers, hspec, STL }: @@ -56585,6 +56704,25 @@ self: { hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; }) {}; + "dejafu_0_8_0_0" = callPackage + ({ mkDerivation, base, concurrency, containers, deepseq, exceptions + , leancheck, mtl, random, ref-fd, semigroups, transformers + , transformers-base + }: + mkDerivation { + pname = "dejafu"; + version = "0.8.0.0"; + sha256 = "0im33v22m0b9lkq2430g9q5b21qz26sr7zrg4sfr4yn8rr0bgzfa"; + libraryHaskellDepends = [ + base concurrency containers deepseq exceptions leancheck mtl random + ref-fd semigroups transformers transformers-base + ]; + homepage = "https://github.com/barrucadu/dejafu"; + description = "Systematic testing for Haskell concurrency"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "deka" = callPackage ({ mkDerivation, base, bytestring, mpdec, parsec, transformers }: mkDerivation { @@ -57148,12 +57286,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "derulo" = callPackage + ({ mkDerivation, base, doctest }: + mkDerivation { + pname = "derulo"; + version = "0.0.3"; + sha256 = "19g7nrgd5z7larkw1nb4vm9hfid1j8s2pcqyqflff4mp764m2ipg"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; + homepage = "https://github.com/tfausak/derulo#readme"; + description = "Parse and render JSON simply"; + license = stdenv.lib.licenses.mit; + }) {}; + "descrilo" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "descrilo"; - version = "0.1.0.4"; - sha256 = "0hi185nbxmx3pfbml3qsrnk506nsq93aib10sw374vqyicw958qp"; + version = "0.1.0.5"; + sha256 = "13pmncbss1fwzc8n37rc7czdpjh12iim5nc10p0486ka5asxcc95"; libraryHaskellDepends = [ base ]; description = "Loads a list of items with fields"; license = stdenv.lib.licenses.gpl3; @@ -57636,6 +57790,8 @@ self: { pname = "diagrams-canvas"; version = "1.4"; sha256 = "1sbnnmj85vm6kjgzvrd3jyg40crz0i16ik6q3prwm4c38zr2yqih"; + revision = "1"; + editedCabalFile = "174nkb6ki100zh0hbrj8p4n52031jny6683n80i602544iikvbn9"; libraryHaskellDepends = [ base blank-canvas cmdargs containers data-default-class diagrams-core diagrams-lib lens mtl NumInstances @@ -58924,6 +59080,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "direct-sqlite_2_3_21" = callPackage + ({ mkDerivation, base, base16-bytestring, bytestring, directory + , HUnit, temporary, text + }: + mkDerivation { + pname = "direct-sqlite"; + version = "2.3.21"; + sha256 = "101pjvldzbvavjgpzwl0xnpqp0wy7bz1ryfx4sim3w00xj7csfys"; + libraryHaskellDepends = [ base bytestring text ]; + testHaskellDepends = [ + base base16-bytestring bytestring directory HUnit temporary text + ]; + homepage = "https://github.com/IreneKnapp/direct-sqlite"; + description = "Low-level binding to SQLite3. Includes UTF8 and BLOB support."; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "directed-cubical" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, hashable , parallel, QuickCheck, unordered-containers, vector @@ -58941,12 +59115,12 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "directory_1_3_1_3" = callPackage + "directory_1_3_1_4" = callPackage ({ mkDerivation, base, filepath, time, unix }: mkDerivation { pname = "directory"; - version = "1.3.1.3"; - sha256 = "1ai5qaj20f26gyg8yb34q45rlzcqziis20xlqfff18626mgl154a"; + version = "1.3.1.4"; + sha256 = "05366w53m2g38ywgbnxs89iivxg738xhyhsszm63xq1pyy90nz4f"; libraryHaskellDepends = [ base filepath time unix ]; testHaskellDepends = [ base filepath time unix ]; description = "Platform-agnostic library for filesystem operations"; @@ -59195,8 +59369,8 @@ self: { pname = "discrimination"; version = "0.2.1"; sha256 = "1krcpv1vp8wa4kdlg3ikx895vf96czkw0i3sczw8vyascczs8cdl"; - revision = "2"; - editedCabalFile = "0byjk3k7f7jvx8kd2y2mi8fl93p85rbn2ycmg0yhb7wlyi7hzyfp"; + revision = "3"; + editedCabalFile = "1g0dixgjmdc1hr7b9w57rm7agp3419bd2akv9wysghmsvf3j7893"; libraryHaskellDepends = [ array base containers contravariant deepseq ghc-prim hashable primitive profunctors promises semigroups transformers @@ -59289,6 +59463,18 @@ self: { hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; }) {}; + "display" = callPackage + ({ mkDerivation, base, bytestring }: + mkDerivation { + pname = "display"; + version = "0.0.0"; + sha256 = "1z5spl8l4n2x17szlyra2m1973ppgd9xqw851zgnmrvlp79gr0ls"; + libraryHaskellDepends = [ base bytestring ]; + homepage = "https://github.com/chrisdone/display#readme"; + description = "Display things for humans to read"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "display-haskell-do" = callPackage ({ mkDerivation, aeson, base, text }: mkDerivation { @@ -60459,8 +60645,8 @@ self: { }: mkDerivation { pname = "docker-build-cacher"; - version = "1.1"; - sha256 = "0rc6i4s8iw1qbz9nicbcqjv2b0pr0vzkld8srs4ns41nq4brcdbn"; + version = "1.7.1"; + sha256 = "0b10irbr75y0hl9mzpp6ws72gk3vqzpy5axdqa7f45zaxam8iim9"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -60758,16 +60944,16 @@ self: { "dom-parser" = callPackage ({ mkDerivation, base, case-insensitive, containers, data-default - , hspec, lens, mtl, open-union, scientific, semigroups, shakespeare - , text, transformers, type-fun, xml-conduit, xml-lens + , hspec, lens, mtl, scientific, semigroups, shakespeare, text + , transformers, xml-conduit, xml-lens }: mkDerivation { pname = "dom-parser"; - version = "2.0.0"; - sha256 = "0f6grib1a2nlw9fvkdzkpx4y9i4dajkmir0qgsrd7mrhff2h7qlx"; + version = "3.0.0"; + sha256 = "143lvcx11dmj3f0aa4h7wh693ak6nbjyc7bz18w0iwpvp9krgla9"; libraryHaskellDepends = [ - base case-insensitive containers lens mtl open-union scientific - semigroups text transformers type-fun xml-conduit xml-lens + base case-insensitive containers lens mtl scientific semigroups + text transformers xml-conduit xml-lens ]; testHaskellDepends = [ base data-default hspec lens semigroups shakespeare text @@ -60800,17 +60986,19 @@ self: { }) {}; "domain-auth" = callPackage - ({ mkDerivation, appar, base, binary, blaze-builder, bytestring - , containers, crypto-pubkey-types, dns, iproute, network, RSA, SHA + ({ mkDerivation, asn1-encoding, asn1-types, attoparsec, base + , bytestring, containers, cryptonite, dns, doctest, iproute, memory + , network, pretty-simple, word8, x509 }: mkDerivation { pname = "domain-auth"; - version = "0.2.1"; - sha256 = "1b1kw4pkm1f5z5qwyfpppk5rjqzi4i7b2vx4zmb2cd9398dnkj4a"; + version = "0.2.2"; + sha256 = "0ipmj209wdvqy8cncsq2bbnnms2ymd3n5kbiv2ydm8ahpiav5dhx"; libraryHaskellDepends = [ - appar base binary blaze-builder bytestring containers - crypto-pubkey-types dns iproute network RSA SHA + asn1-encoding asn1-types attoparsec base bytestring containers + cryptonite dns iproute memory network word8 x509 ]; + testHaskellDepends = [ base doctest pretty-simple ]; description = "Domain authentication library"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -63373,6 +63561,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "either-list-functions" = callPackage + ({ mkDerivation, base, doctest }: + mkDerivation { + pname = "either-list-functions"; + version = "0.0.0.1"; + sha256 = "1k5zpyii5wkzr1xzfbkl015sj91pghl93ifjs6shgyysyh6b62z5"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; + homepage = "https://github.com/chris-martin/either-list-functions#readme"; + description = "Functions involving lists of Either"; + license = stdenv.lib.licenses.asl20; + }) {}; + "either-unwrap" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -63650,6 +63851,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "ekg-statsd_0_2_2_0" = callPackage + ({ mkDerivation, base, bytestring, ekg-core, network, text, time + , unordered-containers + }: + mkDerivation { + pname = "ekg-statsd"; + version = "0.2.2.0"; + sha256 = "1z1si5zglmwq0qxhd4s8zmp8rps8z4xqnk4l8wlal79f1qkz9862"; + libraryHaskellDepends = [ + base bytestring ekg-core network text time unordered-containers + ]; + homepage = "https://github.com/tibbe/ekg-statsd"; + description = "Push metrics to statsd"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ekg-wai" = callPackage ({ mkDerivation, aeson, base, bytestring, ekg-core, ekg-json , filepath, http-types, network, text, time, transformers @@ -67498,6 +67716,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "extensible_0_4_5" = callPackage + ({ mkDerivation, base, comonad, constraints, deepseq, ghc-prim + , lens, monad-skeleton, mtl, primitive, profunctors, QuickCheck + , semigroups, StateVar, tagged, template-haskell, transformers + }: + mkDerivation { + pname = "extensible"; + version = "0.4.5"; + sha256 = "10cs47fdl79dasq5afbj5b47ybmvfsx589bwy6y3qcmlwybjnmlj"; + libraryHaskellDepends = [ + base comonad constraints deepseq ghc-prim monad-skeleton mtl + primitive profunctors QuickCheck semigroups StateVar tagged + template-haskell transformers + ]; + testHaskellDepends = [ base lens QuickCheck template-haskell ]; + homepage = "https://github.com/fumieval/extensible"; + description = "Extensible, efficient, optics-friendly data types and effects"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "extensible-data" = callPackage ({ mkDerivation, base, data-lens, hashable, template-haskell , unordered-containers @@ -67686,8 +67925,8 @@ self: { ({ mkDerivation, base, leancheck, speculate, template-haskell }: mkDerivation { pname = "extrapolate"; - version = "0.2.3"; - sha256 = "10zzsikammd770pwa3h9cj8ha2dyrcp9111qv9bskvr2bcx8axgq"; + version = "0.2.4"; + sha256 = "14i1kb4l1wnc47fp2if95yk5jrb4s0p81c8bgda7lwihas9x8h9r"; libraryHaskellDepends = [ base leancheck speculate template-haskell ]; @@ -68088,8 +68327,8 @@ self: { ({ mkDerivation, base, ghc-prim, integer-gmp, strict-base }: mkDerivation { pname = "fast-mult"; - version = "0.1.0.0"; - sha256 = "19ra4sl10qawn2ig97ls0ib2sfy2b891gkjl4k7nia5lqp69smjh"; + version = "0.1.0.2"; + sha256 = "0lpgfb1a2kf0c9w9br2izzqn0f66pchydnq87a7z74lzs5jm1bba"; libraryHaskellDepends = [ base ghc-prim integer-gmp strict-base ]; homepage = "https://github.com/clintonmead/fast-mult#readme"; description = "Numeric type with asymptotically faster multiplications"; @@ -73173,6 +73412,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "frisby_0_2_1" = callPackage + ({ mkDerivation, array, base, containers, mtl, semigroups }: + mkDerivation { + pname = "frisby"; + version = "0.2.1"; + sha256 = "1xlfidsivvq9a152k3cg3ancyma3lc177jcbk6c0cgpd7zzpiib4"; + libraryHaskellDepends = [ array base containers mtl semigroups ]; + homepage = "http://repetae.net/computer/frisby/"; + description = "Linear time composable parser for PEG grammars"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "from-sum" = callPackage ({ mkDerivation, base, doctest, Glob, mtl }: mkDerivation { @@ -74393,6 +74645,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "gauge" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, basement, bytestring + , code-page, containers, deepseq, directory, foundation, HUnit + , math-functions, mwc-random, optparse-applicative, QuickCheck + , statistics, tasty, tasty-hunit, tasty-quickcheck, vector + }: + mkDerivation { + pname = "gauge"; + version = "0.1.0"; + sha256 = "10hxx7n8hpcivi0g34w85dsvfx4l926rv1b6s88hyhpwj4qyvxb5"; + libraryHaskellDepends = [ + ansi-wl-pprint base basement code-page containers deepseq + foundation math-functions mwc-random optparse-applicative vector + ]; + testHaskellDepends = [ + base bytestring deepseq directory foundation HUnit QuickCheck + statistics tasty tasty-hunit tasty-quickcheck vector + ]; + homepage = "https://github.com/vincenthz/hs-gauge"; + description = "small framework for performance measurement and analysis"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "gbu" = callPackage ({ mkDerivation, base, containers, fgl, Graphalyze, haskell98, mtl , regex-posix @@ -74508,6 +74783,38 @@ self: { inherit (pkgs) libjpeg; inherit (pkgs) libpng; inherit (pkgs) zlib;}; + "gdax" = callPackage + ({ mkDerivation, aeson, aeson-casing, aeson-pretty, base + , base64-bytestring, byteable, bytestring, containers, cryptohash + , exceptions, http-client, http-client-tls, lens, lens-aeson, mtl + , scientific, tasty, tasty-hunit, tasty-quickcheck, tasty-th, text + , time, uuid, vector, websockets, wreq, wuss + }: + mkDerivation { + pname = "gdax"; + version = "0.5.0.1"; + sha256 = "0bjypc6szmdz0ldbbj3n5a4qf78x00yxvml2n647q5p4laan843a"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson aeson-casing base base64-bytestring byteable bytestring + cryptohash exceptions http-client http-client-tls lens lens-aeson + mtl scientific text time uuid vector websockets wreq wuss + ]; + executableHaskellDepends = [ + aeson aeson-pretty base base64-bytestring bytestring text + websockets wuss + ]; + testHaskellDepends = [ + aeson base base64-bytestring bytestring containers exceptions lens + lens-aeson mtl tasty tasty-hunit tasty-quickcheck tasty-th text + time vector websockets wuss + ]; + homepage = "https://github.com/AndrewRademacher/gdax"; + description = "API Wrapping for Coinbase's GDAX exchange"; + license = stdenv.lib.licenses.mit; + }) {}; + "gdiff" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -74589,6 +74896,24 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "gedcom" = callPackage + ({ mkDerivation, array, base, bytestring, containers, megaparsec + , monad-loops, mtl, text-all, time + }: + mkDerivation { + pname = "gedcom"; + version = "0.1.0.0"; + sha256 = "099y6vgw81v31aijyl81hdijs5vry77jg4qy2gl8w7scn2zp2p58"; + libraryHaskellDepends = [ + array base bytestring containers megaparsec monad-loops mtl + text-all time + ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/CLowcay/hs-gedcom"; + description = "Parser for the GEDCOM genealogy file format"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "geek" = callPackage ({ mkDerivation, aeson, aeson-pretty, air, air-extra, air-th, base , bytestring, containers, curl, data-default, directory, filepath @@ -76775,19 +77100,6 @@ self: { ({ mkDerivation, base, directory, filepath, ghc, ghc-paths, syb }: mkDerivation { pname = "ghc-syb-utils"; - version = "0.2.3.2"; - sha256 = "1h05blm311cg0ricd9skb0m115512mmrrp7g6qh4bbihjmy0l5nb"; - libraryHaskellDepends = [ base ghc syb ]; - testHaskellDepends = [ base directory filepath ghc ghc-paths ]; - homepage = "http://github.com/nominolo/ghc-syb"; - description = "Scrap Your Boilerplate utilities for the GHC API"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "ghc-syb-utils_0_2_3_3" = callPackage - ({ mkDerivation, base, directory, filepath, ghc, ghc-paths, syb }: - mkDerivation { - pname = "ghc-syb-utils"; version = "0.2.3.3"; sha256 = "0fj7cqkdkb2kbfsif62bgc17cymnxjr6nnbsd1z4hfw8hz4pchjz"; libraryHaskellDepends = [ base ghc syb ]; @@ -76795,7 +77107,6 @@ self: { homepage = "http://github.com/nominolo/ghc-syb"; description = "Scrap Your Boilerplate utilities for the GHC API"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ghc-tcplugins-extra" = callPackage @@ -77077,34 +77388,6 @@ self: { }: mkDerivation { pname = "ghcid"; - version = "0.6.6"; - sha256 = "1c3axfzs8dwg0kgicggngbi8j62nzwvzpnzfdwxp7nhi462ngxb2"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base cmdargs directory extra filepath process terminal-size time - unix - ]; - executableHaskellDepends = [ - ansi-terminal base cmdargs containers directory extra filepath - fsnotify process terminal-size time unix - ]; - testHaskellDepends = [ - ansi-terminal base cmdargs containers directory extra filepath - fsnotify process tasty tasty-hunit terminal-size time unix - ]; - homepage = "https://github.com/ndmitchell/ghcid#readme"; - description = "GHCi based bare bones IDE"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "ghcid_0_6_7" = callPackage - ({ mkDerivation, ansi-terminal, base, cmdargs, containers - , directory, extra, filepath, fsnotify, process, tasty, tasty-hunit - , terminal-size, time, unix - }: - mkDerivation { - pname = "ghcid"; version = "0.6.7"; sha256 = "1drx6nwniflgz0l7szdnnbski03c4jpgqlx45cilyq6s50byvqy6"; isLibrary = true; @@ -77123,7 +77406,6 @@ self: { homepage = "https://github.com/ndmitchell/ghcid#readme"; description = "GHCi based bare bones IDE"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ghcjs-ajax" = callPackage @@ -77250,6 +77532,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ghcjs-fetch" = callPackage + ({ mkDerivation, aeson, base, bytestring, case-insensitive + , ghcjs-base-stub, http-types + }: + mkDerivation { + pname = "ghcjs-fetch"; + version = "0.1.0.0"; + sha256 = "0ya6n8716likfgmm69z8q6dj4gf1w7063ni24di8xbv5ylxa0d39"; + libraryHaskellDepends = [ + aeson base bytestring case-insensitive ghcjs-base-stub http-types + ]; + homepage = "https://github.com/cocreature/ghcjs-fetch#readme"; + description = "GHCJS bindings for the JavaScript Fetch API"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "ghcjs-hplay" = callPackage ({ mkDerivation, base, bytestring, containers, directory , ghcjs-perch, mtl, transformers, transient, transient-universe @@ -78452,7 +78750,6 @@ self: { , persistent, persistent-sqlite, persistent-template, process , QuickCheck, random, regex-tdfa, resourcet, rsync, SafeSemaphore , sandi, securemem, shakespeare, socks, split, stm, stm-chans - , tasty, tasty-hunit, tasty-quickcheck, tasty-rerun , template-haskell, text, time, torrent, transformers, unix , unix-compat, unordered-containers, utf8-string, uuid, wai , wai-extra, warp, warp-tls, wget, which, yesod, yesod-core @@ -78460,12 +78757,12 @@ self: { }: mkDerivation { pname = "git-annex"; - version = "6.20170818"; - sha256 = "0ybxixbqvy4rx6mq9s02rh349rbr04hb17z4bfayin0qwa5kzpvx"; + version = "6.20170925"; + sha256 = "0kzqndnazqhm777gaym7lp6rknhll3b6lr19y4cxqpr1baslvcf0"; configureFlags = [ "-fassistant" "-fcryptonite" "-fdbus" "-fdesktopnotify" "-fdns" "-ffeed" "-finotify" "-fpairing" "-fproduction" "-fquvi" "-fs3" - "-ftahoe" "-ftdfa" "-ftestsuite" "-ftorrentparser" "-fwebapp" + "-ftahoe" "-ftdfa" "-f-testsuite" "-ftorrentparser" "-fwebapp" "-fwebapp-secure" "-fwebdav" "-fxmpp" ]; isLibrary = false; @@ -78485,15 +78782,15 @@ self: { network-multicast network-uri old-locale optparse-applicative path-pieces persistent persistent-sqlite persistent-template process QuickCheck random regex-tdfa resourcet SafeSemaphore sandi - securemem shakespeare socks split stm stm-chans tasty tasty-hunit - tasty-quickcheck tasty-rerun template-haskell text time torrent - transformers unix unix-compat unordered-containers utf8-string uuid - wai wai-extra warp warp-tls yesod yesod-core yesod-default - yesod-form yesod-static + securemem shakespeare socks split stm stm-chans template-haskell + text time torrent transformers unix unix-compat + unordered-containers utf8-string uuid wai wai-extra warp warp-tls + yesod yesod-core yesod-default yesod-form yesod-static ]; executableSystemDepends = [ bup curl git gnupg lsof openssh perl rsync wget which ]; + doCheck = false; preConfigure = "export HOME=$TEMPDIR; patchShebangs ."; installPhase = "make PREFIX=$out BUILDER=: install"; checkPhase = '' @@ -78886,6 +79183,37 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "github_0_17_0" = callPackage + ({ mkDerivation, aeson, aeson-compat, base, base-compat + , base16-bytestring, binary, binary-orphans, byteable, bytestring + , containers, cryptohash, deepseq, deepseq-generics, exceptions + , file-embed, hashable, hspec, http-client, http-client-tls + , http-link-header, http-types, iso8601-time, mtl, network-uri + , semigroups, text, time, tls, transformers, transformers-compat + , unordered-containers, vector, vector-instances + }: + mkDerivation { + pname = "github"; + version = "0.17.0"; + sha256 = "1w9r40c2wjzlc503g30br6dwq213b2q6qap4r1nlk13z9r57c9mk"; + libraryHaskellDepends = [ + aeson aeson-compat base base-compat base16-bytestring binary + binary-orphans byteable bytestring containers cryptohash deepseq + deepseq-generics exceptions hashable http-client http-client-tls + http-link-header http-types iso8601-time mtl network-uri semigroups + text time tls transformers transformers-compat unordered-containers + vector vector-instances + ]; + testHaskellDepends = [ + aeson-compat base base-compat file-embed hspec unordered-containers + vector + ]; + homepage = "https://github.com/phadej/github"; + description = "Access to the GitHub API, v3"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "github-backup" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, directory , exceptions, filepath, git, github, hslogger, IfElse, MissingH @@ -79376,8 +79704,8 @@ self: { ({ mkDerivation, base, linear }: mkDerivation { pname = "gjk2d"; - version = "0.1.0.0"; - sha256 = "08fqm3may9vvifp3fvqvmv7n3i05w9w01c2dmg930fwlrw5lly9b"; + version = "0.1.0.1"; + sha256 = "0yvbh660p65njr33py743ifjlm4njmb15b5sghbhhdi5g1b9qn6w"; libraryHaskellDepends = [ base linear ]; testHaskellDepends = [ base linear ]; homepage = "https://github.com/suzumiyasmith/gjk2d#readme"; @@ -79672,6 +80000,25 @@ self: { license = stdenv.lib.licenses.lgpl21; }) {inherit (pkgs) glib;}; + "glib_0_13_5_0" = callPackage + ({ mkDerivation, base, bytestring, Cabal, containers, glib + , gtk2hs-buildtools, text, utf8-string + }: + mkDerivation { + pname = "glib"; + version = "0.13.5.0"; + sha256 = "1bd6lfl8l08s28g9wky2bpyl2kh8vhycdni2wh3m7iq91madxgbj"; + setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; + libraryHaskellDepends = [ + base bytestring containers text utf8-string + ]; + libraryPkgconfigDepends = [ glib ]; + homepage = "http://projects.haskell.org/gtk2hs/"; + description = "Binding to the GLIB library for Gtk2Hs"; + license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) glib;}; + "glicko" = callPackage ({ mkDerivation, base, containers, data-default, deepseq, hspec , lens, parallel, QuickCheck, statistics @@ -79725,10 +80072,8 @@ self: { }: mkDerivation { pname = "glirc"; - version = "2.23"; - sha256 = "0iv4n6i63f1x1808a3dvrbxyibi7jd1c8barsqbf9h1bqwazgsah"; - revision = "2"; - editedCabalFile = "14jk02g995qpa1amkngy7vqyxjfxmmwr0585sjg2d6jw2wrzydal"; + version = "2.24"; + sha256 = "1fhpwr7v2ad49j9699f5za1ww2m1ln39cvnm82z57cngjghpnngs"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal filepath ]; @@ -79753,8 +80098,8 @@ self: { }: mkDerivation { pname = "gll"; - version = "0.4.0.3"; - sha256 = "13s1bmxrm3vxivywrhj0za746157fv38kalf0vk593psj03f5scv"; + version = "0.4.0.4"; + sha256 = "01qnvynldllb4qdvg29r64qq17qb1fs8yg7jgyj3f8ajgyi5jn9q"; libraryHaskellDepends = [ array base containers pretty regex-applicative text TypeCompose ]; @@ -83158,16 +83503,17 @@ self: { }) {}; "graphite" = callPackage - ({ mkDerivation, base, containers, graphviz, hashable, hspec - , process, QuickCheck, random, unordered-containers + ({ mkDerivation, base, bytestring, cassava, containers, graphviz + , hashable, hspec, process, QuickCheck, random + , unordered-containers, vector }: mkDerivation { pname = "graphite"; - version = "0.4.0.0"; - sha256 = "1xfa0wqgnbwn4wbkxk8hy70gkg20175d7scmvb8brin7ygy6pnxk"; + version = "0.4.1.0"; + sha256 = "1qk3inkd9lrvhds553z0jvflpalmr02hgx4656x0qp2yqh9nvp96"; libraryHaskellDepends = [ - base containers graphviz hashable process QuickCheck random - unordered-containers + base bytestring cassava containers graphviz hashable process + QuickCheck random unordered-containers vector ]; testHaskellDepends = [ base hspec QuickCheck ]; homepage = "https://github.com/alx741/graphite#readme"; @@ -84182,6 +84528,26 @@ self: { license = stdenv.lib.licenses.lgpl21; }) {gtk2 = pkgs.gnome2.gtk;}; + "gtk_0_14_7" = callPackage + ({ mkDerivation, array, base, bytestring, Cabal, cairo, containers + , gio, glib, gtk2, gtk2hs-buildtools, mtl, pango, text + }: + mkDerivation { + pname = "gtk"; + version = "0.14.7"; + sha256 = "0fqbr1h2zxa4g6jyias163bnlsnsdhfzfansc63qzh9y10vc2hn4"; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; + libraryHaskellDepends = [ + array base bytestring cairo containers gio glib mtl pango text + ]; + libraryPkgconfigDepends = [ gtk2 ]; + homepage = "http://projects.haskell.org/gtk2hs/"; + description = "Binding to the Gtk+ graphical user interface library"; + license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = stdenv.lib.platforms.none; + }) {gtk2 = pkgs.gnome2.gtk;}; + "gtk-helpers" = callPackage ({ mkDerivation, array, base, gio, glib, gtk, mtl, process , template-haskell @@ -84336,6 +84702,31 @@ self: { license = stdenv.lib.licenses.gpl2; }) {}; + "gtk2hs-buildtools_0_13_3_0" = callPackage + ({ mkDerivation, alex, array, base, Cabal, containers, directory + , filepath, happy, hashtables, pretty, process, random + }: + mkDerivation { + pname = "gtk2hs-buildtools"; + version = "0.13.3.0"; + sha256 = "1kz5631vpi4wbi0jldj7gs1xc86vfxdcs750a72x3nbdddbc0asv"; + revision = "1"; + editedCabalFile = "0nbfvza67z6wi7lgpa8zdr7smqzh5xjvhjd7a4iigls8jj74h78s"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + array base Cabal containers directory filepath hashtables pretty + process random + ]; + libraryToolDepends = [ alex happy ]; + executableHaskellDepends = [ base ]; + homepage = "http://projects.haskell.org/gtk2hs/"; + description = "Tools to build the Gtk2Hs suite of User Interface libraries"; + license = stdenv.lib.licenses.gpl2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "gtk2hs-cast-glade" = callPackage ({ mkDerivation, base, glade, gtk, gtk2hs-cast-glib, hint , template-haskell @@ -84493,6 +84884,32 @@ self: { hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; }) {inherit (pkgs) gtk3;}; + "gtk3_0_14_7" = callPackage + ({ mkDerivation, array, base, bytestring, Cabal, cairo, containers + , gio, glib, gtk2hs-buildtools, gtk3, mtl, pango, text, time + , transformers + }: + mkDerivation { + pname = "gtk3"; + version = "0.14.7"; + sha256 = "0mvzpx4ciral5hnz2iimwag4gbjjciqhjxbbdssg8mg4yvzpb99s"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; + libraryHaskellDepends = [ + array base bytestring cairo containers gio glib mtl pango text + ]; + libraryPkgconfigDepends = [ gtk3 ]; + executableHaskellDepends = [ + array base cairo text time transformers + ]; + homepage = "http://projects.haskell.org/gtk2hs/"; + description = "Binding to the Gtk+ 3 graphical user interface library"; + license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) gtk3;}; + "gtk3-mac-integration" = callPackage ({ mkDerivation, array, base, Cabal, containers, glib , gtk-mac-integration-gtk3, gtk2hs-buildtools, gtk3, mtl @@ -89347,6 +89764,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "hashtables_1_2_2_1" = callPackage + ({ mkDerivation, base, ghc-prim, hashable, primitive, vector }: + mkDerivation { + pname = "hashtables"; + version = "1.2.2.1"; + sha256 = "1g7nvj4cmscv1jjhms1pxb2gj4rflg2pcj3pb2z7x9fck8557bbs"; + libraryHaskellDepends = [ + base ghc-prim hashable primitive vector + ]; + homepage = "http://github.com/gregorycollins/hashtables"; + description = "Mutable hash tables in the ST monad"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hashtables-plus" = callPackage ({ mkDerivation, base, criterion-plus, deepseq, hashable , hashtables, lens, loch-th, mtl, mwc-random, placeholders @@ -92624,35 +93056,6 @@ self: { }: mkDerivation { pname = "hasql"; - version = "0.19.18.1"; - sha256 = "1cmr3l9gb639spqdw8if1da23qhlifr4jyxgfmy61l81mm42zjfb"; - libraryHaskellDepends = [ - attoparsec base base-prelude bytestring bytestring-strict-builder - contravariant contravariant-extras data-default-class dlist either - hashable hashtables loch-th mtl placeholders postgresql-binary - postgresql-libpq profunctors semigroups text transformers vector - ]; - testHaskellDepends = [ - bug data-default-class QuickCheck quickcheck-instances rebase - rerebase tasty tasty-hunit tasty-quickcheck tasty-smallcheck - ]; - benchmarkHaskellDepends = [ bug criterion rerebase ]; - homepage = "https://github.com/nikita-volkov/hasql"; - description = "An efficient PostgreSQL driver and a flexible mapping API"; - license = stdenv.lib.licenses.mit; - }) {}; - - "hasql_0_19_18_2" = callPackage - ({ mkDerivation, attoparsec, base, base-prelude, bug, bytestring - , bytestring-strict-builder, contravariant, contravariant-extras - , criterion, data-default-class, dlist, either, hashable - , hashtables, loch-th, mtl, placeholders, postgresql-binary - , postgresql-libpq, profunctors, QuickCheck, quickcheck-instances - , rebase, rerebase, semigroups, tasty, tasty-hunit - , tasty-quickcheck, tasty-smallcheck, text, transformers, vector - }: - mkDerivation { - pname = "hasql"; version = "0.19.18.2"; sha256 = "064866vgiwpp39g3drw0gralra4via77rcqxri8279svm8m5vmbi"; libraryHaskellDepends = [ @@ -92669,7 +93072,6 @@ self: { homepage = "https://github.com/nikita-volkov/hasql"; description = "An efficient PostgreSQL driver and a flexible mapping API"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hasql-backend" = callPackage @@ -95545,6 +95947,8 @@ self: { pname = "hetero-dict"; version = "0.1.1.0"; sha256 = "0s9ild828xa628x6swrk4v2jnqdkam18bamrarvgp6q9b4b8y2w8"; + revision = "1"; + editedCabalFile = "155bm9b10ar0vhwy46dz68h53379x31xzkdzvhki3y0ln5j8y74i"; libraryHaskellDepends = [ aeson base primitive template-haskell text unordered-containers ]; @@ -96085,23 +96489,6 @@ self: { }: mkDerivation { pname = "hformat"; - version = "0.3.0.0"; - sha256 = "00l0jcigcrk8yphfgyd8kzc06k7rlka26qc565w4rj9s9dn67y6s"; - libraryHaskellDepends = [ - ansi-terminal base base-unicode-symbols text - ]; - testHaskellDepends = [ base base-unicode-symbols hspec text ]; - homepage = "http://github.com/mvoidex/hformat"; - description = "Simple Haskell formatting"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "hformat_0_3_1_0" = callPackage - ({ mkDerivation, ansi-terminal, base, base-unicode-symbols, hspec - , text - }: - mkDerivation { - pname = "hformat"; version = "0.3.1.0"; sha256 = "1lf6x8y81jxvynid1k3588kbc7xk331bp6c4hnd8x19l0jvp4shd"; libraryHaskellDepends = [ @@ -96111,7 +96498,6 @@ self: { homepage = "http://github.com/mvoidex/hformat"; description = "Simple Haskell formatting"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hfov" = callPackage @@ -96371,8 +96757,8 @@ self: { }: mkDerivation { pname = "hgis"; - version = "0.1.3.5"; - sha256 = "1vmx21s0q9w21118m60hzrfk1p704m7675k7idrqlwd4da54ib7c"; + version = "0.1.3.6"; + sha256 = "1f4hj30ivx37lcxpmhvxchn153rbdxz91lcdphagf1j1j3imx1zw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -98067,37 +98453,36 @@ self: { "hledger" = callPackage ({ mkDerivation, ansi-terminal, base, base-compat, bytestring - , cmdargs, containers, criterion, csv, data-default, directory - , file-embed, filepath, hashable, haskeline, here, hledger-lib - , html, HUnit, megaparsec, mtl, mtl-compat, old-time, parsec - , pretty-show, process, regex-tdfa, safe, shakespeare, split - , tabular, temporary, terminfo, test-framework + , cmdargs, containers, criterion, csv, data-default, Diff + , directory, file-embed, filepath, hashable, haskeline, here + , hledger-lib, html, HUnit, megaparsec, mtl, mtl-compat, old-time + , parsec, pretty-show, process, regex-tdfa, safe, shakespeare + , split, tabular, temporary, terminfo, test-framework , test-framework-hunit, text, time, timeit, transformers - , unordered-containers, utf8-string, wizards + , unordered-containers, utf8-string, utility-ht, wizards }: mkDerivation { pname = "hledger"; - version = "1.3.1"; - sha256 = "0h2ljdncxg5f17llnck6136mn9dn83ql85apnm04sm9cxq7iqqxd"; - revision = "1"; - editedCabalFile = "165jja9hj9f949g26issn8qra7zairm3s48q5kamy6qshbhfy0km"; + version = "1.4"; + sha256 = "146llzlpijcai3cfqcd4l4dcyjq6j6wd6pinkllja73vpx7wyi75"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ ansi-terminal base base-compat bytestring cmdargs containers csv - data-default directory file-embed filepath hashable haskeline here - hledger-lib HUnit megaparsec mtl mtl-compat old-time pretty-show - process regex-tdfa safe shakespeare split tabular temporary - terminfo text time transformers unordered-containers utf8-string - wizards + data-default Diff directory file-embed filepath hashable haskeline + here hledger-lib HUnit megaparsec mtl mtl-compat old-time + pretty-show process regex-tdfa safe shakespeare split tabular + temporary terminfo text time transformers unordered-containers + utf8-string utility-ht wizards ]; executableHaskellDepends = [ ansi-terminal base base-compat bytestring cmdargs containers csv data-default directory file-embed filepath haskeline here hledger-lib HUnit mtl mtl-compat old-time parsec pretty-show process regex-tdfa safe shakespeare split tabular temporary - terminfo text time unordered-containers utf8-string wizards + terminfo text time unordered-containers utf8-string utility-ht + wizards ]; testHaskellDepends = [ ansi-terminal base base-compat bytestring cmdargs containers csv @@ -98105,12 +98490,12 @@ self: { hledger-lib HUnit mtl mtl-compat old-time parsec pretty-show process regex-tdfa safe shakespeare split tabular temporary terminfo test-framework test-framework-hunit text time - unordered-containers utf8-string wizards + unordered-containers utf8-string utility-ht wizards ]; benchmarkHaskellDepends = [ ansi-terminal base base-compat criterion directory file-embed - filepath here hledger-lib html pretty-show process tabular - temporary time timeit + filepath here hledger-lib html pretty-show process shakespeare + tabular temporary terminfo time timeit utility-ht ]; homepage = "http://hledger.org"; description = "Command-line interface for the hledger accounting tool"; @@ -98126,10 +98511,8 @@ self: { }: mkDerivation { pname = "hledger-api"; - version = "1.3.1"; - sha256 = "149v81qslajzkr13ba7j4qqliagaq88v3d3pw301haf4v3wz9sv4"; - revision = "1"; - editedCabalFile = "11rsyhfxjr87j9m3frnkq6mssj6isay29v61l280a1bd5r58zcr3"; + version = "1.4"; + sha256 = "00vpl1ch1v80f37y8yn2psdzm7ccxpfn3jp93xqxbasksxfawfa7"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -98190,8 +98573,8 @@ self: { pname = "hledger-iadd"; version = "1.2.6"; sha256 = "1l5vzhyya5h6sc3l74iy0mnys8bcjp6m5z0m3lqabk37ik31ld36"; - revision = "1"; - editedCabalFile = "1mr997ryvxv3aq0km3f1h2y0i79m0lb7pl8mn3way5wa82x10kbg"; + revision = "2"; + editedCabalFile = "0a9ciakp892i0g8kf199lh4x0gzisbjaidihhinkf7gk3f40p3il"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -98262,10 +98645,8 @@ self: { }: mkDerivation { pname = "hledger-lib"; - version = "1.3.2"; - sha256 = "1qlfzw8nh4isfjqmnq16qrfas9flhyn2b6mf9nvcg0bgm4m7hs7n"; - revision = "1"; - editedCabalFile = "1frcbzksnpxl6m7jn6sj9am3f65gs5zp1pzr6jb7a5kxkdkpmyv1"; + version = "1.4"; + sha256 = "15hyrpn0ifwx4x22hggjdm1xz0jyk8p5wnrynzxy9ali0wci1qxq"; enableSeparateDataOutput = true; libraryHaskellDepends = [ ansi-terminal array base base-compat blaze-markup bytestring @@ -98296,10 +98677,8 @@ self: { }: mkDerivation { pname = "hledger-ui"; - version = "1.3.1"; - sha256 = "1mnvqhp32m9xfyabzl19djy74v5nr9mwaanpnwxqp1wkifq7cmxs"; - revision = "1"; - editedCabalFile = "0va8jvqakgsra3za7k9j8mjmn6k39881zv0l8hh069dhk7yqd49r"; + version = "1.4"; + sha256 = "0rm6091nlpijhi6k74dg35g38a7ly22mqfnb0mvjp8pyxb4phq33"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -98345,10 +98724,8 @@ self: { }: mkDerivation { pname = "hledger-web"; - version = "1.3.2"; - sha256 = "0lcrgg6d0gpi9z855byjibzr82bbvmr6bbca5k3ivigd0yzc467d"; - revision = "1"; - editedCabalFile = "11imvlhh7lxml59fncmx5dw76gjfby75czfqz3ywk6zcsznjbl80"; + version = "1.4"; + sha256 = "1l5mxvhgvn3q1ds9qmqkdmrs82619nvs13gmjsynr0vbbx52zw7h"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -98356,25 +98733,25 @@ self: { base base-compat blaze-html blaze-markup bytestring clientsession cmdargs conduit-extra data-default directory filepath hjsmin hledger hledger-lib http-client http-conduit HUnit json megaparsec - mtl safe shakespeare template-haskell text time transformers wai - wai-extra wai-handler-launch warp yaml yesod yesod-core yesod-form - yesod-static + mtl parsec safe shakespeare template-haskell text time transformers + wai wai-extra wai-handler-launch warp yaml yesod yesod-core + yesod-form yesod-static ]; executableHaskellDepends = [ base base-compat blaze-html blaze-markup bytestring clientsession cmdargs conduit-extra data-default directory filepath hjsmin - hledger hledger-lib http-client http-conduit HUnit json parsec safe - shakespeare template-haskell text time transformers wai wai-extra - wai-handler-launch warp yaml yesod yesod-core yesod-form - yesod-static + hledger hledger-lib http-client http-conduit HUnit json megaparsec + mtl parsec safe shakespeare template-haskell text time transformers + wai wai-extra wai-handler-launch warp yaml yesod yesod-core + yesod-form yesod-static ]; testHaskellDepends = [ base base-compat blaze-html blaze-markup bytestring clientsession cmdargs conduit-extra data-default directory filepath hjsmin - hledger hledger-lib hspec http-client http-conduit HUnit json safe - shakespeare template-haskell text time transformers wai wai-extra - wai-handler-launch warp yaml yesod yesod-core yesod-form - yesod-static yesod-test + hledger hledger-lib hspec http-client http-conduit HUnit json + megaparsec mtl parsec safe shakespeare template-haskell text time + transformers wai wai-extra wai-handler-launch warp yaml yesod + yesod-core yesod-form yesod-static yesod-test ]; homepage = "http://hledger.org"; description = "Web interface for the hledger accounting tool"; @@ -98692,23 +99069,6 @@ self: { }: mkDerivation { pname = "hmatrix-gsl-stats"; - version = "0.4.1.6"; - sha256 = "0wfdj4difqr20ls8i6jlxxsip19xwi8msal7d1l2a995663vpx8v"; - libraryHaskellDepends = [ - base binary hmatrix storable-complex vector - ]; - libraryPkgconfigDepends = [ gsl ]; - homepage = "http://code.haskell.org/hmatrix-gsl-stats"; - description = "GSL Statistics interface"; - license = stdenv.lib.licenses.bsd3; - }) {inherit (pkgs) gsl;}; - - "hmatrix-gsl-stats_0_4_1_7" = callPackage - ({ mkDerivation, base, binary, gsl, hmatrix, storable-complex - , vector - }: - mkDerivation { - pname = "hmatrix-gsl-stats"; version = "0.4.1.7"; sha256 = "1gslgk58lzin43cvbpivhw7nrn9qyaa6qwhy1z9ypvyal5p8n3sa"; libraryHaskellDepends = [ @@ -98718,7 +99078,6 @@ self: { homepage = "http://code.haskell.org/hmatrix-gsl-stats"; description = "GSL Statistics interface"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) gsl;}; "hmatrix-mmap" = callPackage @@ -99225,8 +99584,8 @@ self: { }: mkDerivation { pname = "hnormalise"; - version = "0.4.2.0"; - sha256 = "1h38qr8d8dbn81bghh3imb7jink6b06wadbpyg4axfr39s21xvkg"; + version = "0.4.7.0"; + sha256 = "0ag600ms1kay8hg2axv65d4nr699c6fq7p2gdjzjjr2cvs6l06ws"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -100809,29 +101168,29 @@ self: { }) {}; "hpack" = callPackage - ({ mkDerivation, aeson, aeson-qq, base, base-compat, bytestring - , containers, deepseq, directory, filepath, Glob, hspec - , interpolate, mockery, QuickCheck, temporary, text + ({ mkDerivation, aeson, base, base-compat, bytestring, Cabal + , containers, deepseq, directory, filepath, Glob, hspec, HUnit + , interpolate, mockery, pretty, QuickCheck, temporary, text , unordered-containers, yaml }: mkDerivation { pname = "hpack"; - version = "0.18.1"; - sha256 = "1ssawa6187m0xzn7i5hn154qajq46jlpbvz1s28qk4bigpv38m7k"; + version = "0.19.1"; + sha256 = "0ncq8kpmsz6lhqajap9ql5ln3pva9hxwk69hsi3x0dgjvkivpsaf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base base-compat bytestring containers deepseq directory - filepath Glob text unordered-containers yaml + aeson base base-compat bytestring Cabal containers deepseq + directory filepath Glob pretty text unordered-containers yaml ]; executableHaskellDepends = [ - aeson base base-compat bytestring containers deepseq directory - filepath Glob text unordered-containers yaml + aeson base base-compat bytestring Cabal containers deepseq + directory filepath Glob pretty text unordered-containers yaml ]; testHaskellDepends = [ - aeson aeson-qq base base-compat bytestring containers deepseq - directory filepath Glob hspec interpolate mockery QuickCheck - temporary text unordered-containers yaml + aeson base base-compat bytestring Cabal containers deepseq + directory filepath Glob hspec HUnit interpolate mockery pretty + QuickCheck temporary text unordered-containers yaml ]; homepage = "https://github.com/sol/hpack#readme"; description = "An alternative format for Haskell packages"; @@ -104136,8 +104495,8 @@ self: { pname = "hspec-contrib"; version = "0.4.0"; sha256 = "05hchslqqg0k5ksrgy3n8gay0xxnr1zjp4zfj4zp4v0pxq0j57kg"; - revision = "1"; - editedCabalFile = "07p0pckzyih1zc56v2cnchxjsbx4w69b10j343c0yvicq6yjyrkb"; + revision = "2"; + editedCabalFile = "029h7dl49vlrhn62v8kgk8zdavjjc80ga1m8fwhl0pnmvnfkn7sq"; libraryHaskellDepends = [ base hspec-core HUnit ]; testHaskellDepends = [ base hspec hspec-core HUnit QuickCheck ]; homepage = "http://hspec.github.io/"; @@ -104166,6 +104525,7 @@ self: { quickcheck-io random setenv silently temporary tf-random time transformers ]; + testTarget = "--test-option=--skip --test-option='Test.Hspec.Core.Runner.hspecResult runs specs in parallel'"; homepage = "http://hspec.github.io/"; description = "A Testing Framework for Haskell"; license = stdenv.lib.licenses.mit; @@ -105755,6 +106115,28 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "html-conduit_1_2_1_2" = callPackage + ({ mkDerivation, base, bytestring, conduit, conduit-extra + , containers, hspec, HUnit, resourcet, tagstream-conduit, text + , transformers, xml-conduit, xml-types + }: + mkDerivation { + pname = "html-conduit"; + version = "1.2.1.2"; + sha256 = "172ip4rkn2y3mpzjrj2h3nrmxrf90gcl8ax6dgdhrdjsyg4h8vjk"; + libraryHaskellDepends = [ + base bytestring conduit conduit-extra containers resourcet + tagstream-conduit text transformers xml-conduit xml-types + ]; + testHaskellDepends = [ + base bytestring containers hspec HUnit xml-conduit + ]; + homepage = "https://github.com/snoyberg/xml"; + description = "Parse HTML documents using xml-conduit datatypes"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "html-email-validate" = callPackage ({ mkDerivation, attoparsec, base, criterion, hspec, QuickCheck , regex-pcre-builtin, text @@ -107354,12 +107736,12 @@ self: { hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; }) {}; - "hunit-dejafu_0_7_0_0" = callPackage + "hunit-dejafu_0_7_0_1" = callPackage ({ mkDerivation, base, dejafu, exceptions, HUnit }: mkDerivation { pname = "hunit-dejafu"; - version = "0.7.0.0"; - sha256 = "0pp3rxzb00glkc9fn45hik7rn4dwampdbh7va0gdlzh1jma6wpgw"; + version = "0.7.0.1"; + sha256 = "01qa52j5xkksq0z24c8shm04q1gxnqm1m3sqpm1s27ywbivl9n6i"; libraryHaskellDepends = [ base dejafu exceptions HUnit ]; homepage = "https://github.com/barrucadu/dejafu"; description = "Deja Fu support for the HUnit test framework"; @@ -107999,8 +108381,8 @@ self: { }: mkDerivation { pname = "hw-kafka-avro"; - version = "1.1.0"; - sha256 = "0srp47c5s295qmf5vjfz4qfs19xn407c58iv51lij674c587vsvb"; + version = "1.2.0"; + sha256 = "0v2l7g524wz45mnqdqrs33qbb1psm33jlfl1hlnd22dxfw7mhdhl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -112140,6 +112522,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "instance-control_0_1_2_0" = callPackage + ({ mkDerivation, base, mtl, transformers }: + mkDerivation { + pname = "instance-control"; + version = "0.1.2.0"; + sha256 = "0wvb3hia5n0nmfd5ih17qp6f7517s164c5mhrn29ai7vv20x6vbx"; + libraryHaskellDepends = [ base mtl transformers ]; + homepage = "https://github.com/lazac/instance-control"; + description = "Controls how the compiler searches for instances using type families"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "instant-aeson" = callPackage ({ mkDerivation, aeson, base, instant-generics, tasty , tasty-quickcheck @@ -116773,8 +117168,8 @@ self: { }: mkDerivation { pname = "jvm-binary"; - version = "0.0.1"; - sha256 = "0lhk31d0a369jnmyw253wkm1ymdc80a3iw67av4x3d4jajq68kys"; + version = "0.0.2"; + sha256 = "1hdqhp84il50c6wimdvxwdd95gw580hskhmrnn2snqcwj7n1ywfh"; libraryHaskellDepends = [ base binary bytestring containers text vector ]; @@ -116783,7 +117178,7 @@ self: { tasty-discover tasty-hspec tasty-quickcheck text ]; benchmarkHaskellDepends = [ base bytestring criterion ]; - homepage = "https://github.com/kalhauge/jvm-binary#readme"; + homepage = "https://github.com/ucla-pls/jvm-binary#readme"; description = "A library for reading Java class-files"; license = stdenv.lib.licenses.mit; }) {}; @@ -117296,8 +117691,8 @@ self: { }: mkDerivation { pname = "katip"; - version = "0.5.0.1"; - sha256 = "085gvjki8ifq83hz9im53yjzwpz9jr01vn09y4gvwlxniys70yc2"; + version = "0.5.0.2"; + sha256 = "1kiangj6l29ddchfzfp4xjnpnddyc9jzrg08b70z3jxbdv2vgvyg"; libraryHaskellDepends = [ aeson async auto-update base bytestring containers either hostname microlens microlens-th monad-control mtl old-locale resourcet @@ -117320,7 +117715,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "katip_0_5_0_2" = callPackage + "katip_0_5_0_3" = callPackage ({ mkDerivation, aeson, async, auto-update, base, blaze-builder , bytestring, containers, criterion, deepseq, directory, either , filepath, hostname, microlens, microlens-th, monad-control, mtl @@ -117332,8 +117727,8 @@ self: { }: mkDerivation { pname = "katip"; - version = "0.5.0.2"; - sha256 = "1kiangj6l29ddchfzfp4xjnpnddyc9jzrg08b70z3jxbdv2vgvyg"; + version = "0.5.0.3"; + sha256 = "18gpj6h9h90nvpb0fb1ns2ygzip4r0v7hna4q1d6gmz88j28s66a"; libraryHaskellDepends = [ aeson async auto-update base bytestring containers either hostname microlens microlens-th monad-control mtl old-locale resourcet @@ -121434,6 +121829,20 @@ self: { hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; }) {}; + "leancheck_0_6_7" = callPackage + ({ mkDerivation, base, template-haskell }: + mkDerivation { + pname = "leancheck"; + version = "0.6.7"; + sha256 = "1aia20p6r9b4xncv5r7y1a2zff37ky0v0m3fd5idlg3sshsd02kv"; + libraryHaskellDepends = [ base template-haskell ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/rudymatela/leancheck#readme"; + description = "Cholesterol-free property-based testing"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "leankit-api" = callPackage ({ mkDerivation, aeson, base, bytestring, colour, curl, split }: mkDerivation { @@ -122453,6 +122862,28 @@ self: { license = "GPL"; }) {}; + "lhs2tex_1_20" = callPackage + ({ mkDerivation, base, Cabal, directory, filepath, mtl, process + , regex-compat + }: + mkDerivation { + pname = "lhs2tex"; + version = "1.20"; + sha256 = "0fmhvxi1a839h3i6s2aqckh64bc0qyp4hbzc3wp85zr5gmzix1df"; + isLibrary = false; + isExecutable = true; + setupHaskellDepends = [ + base Cabal directory process regex-compat + ]; + executableHaskellDepends = [ + base directory filepath mtl process regex-compat + ]; + homepage = "https://github.com/kosmikus/lhs2tex"; + description = "Preprocessor for typesetting Haskell sources with LaTeX"; + license = "GPL"; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "lhslatex" = callPackage ({ mkDerivation, base, directory, filepath, process, regex-posix }: mkDerivation { @@ -123367,8 +123798,8 @@ self: { ({ mkDerivation, base, containers, gjk2d, lens, linear, mtl }: mkDerivation { pname = "light"; - version = "0.1.0.0"; - sha256 = "1zzf5bi8b6in6dvfv4wfmghcvibia5c0waji9y734kp617lsjxl3"; + version = "0.2.0.0"; + sha256 = "1nrzh3z2fxkzws80amxw112idwlwb7r07igr0381jryfacip0ryy"; libraryHaskellDepends = [ base containers gjk2d lens linear mtl ]; testHaskellDepends = [ base containers lens linear ]; homepage = "https://github.com/suzumiyasmith/light#readme"; @@ -123574,7 +124005,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "line_4_0_0" = callPackage + "line_4_0_1" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, bytestring , cryptohash-sha256, hspec, hspec-wai, http-conduit, http-types , QuickCheck, quickcheck-instances, raw-strings-qq, scotty, text @@ -123582,8 +124013,8 @@ self: { }: mkDerivation { pname = "line"; - version = "4.0.0"; - sha256 = "1xg8d1q7y57k615pdqfn0rx94n49qz9d4647dqyg9gjd7qhzcmkx"; + version = "4.0.1"; + sha256 = "0z36847iamf18b38nz6mcps599cnn17046n61y94g1q7rmfsppx1"; libraryHaskellDepends = [ aeson base base64-bytestring bytestring cryptohash-sha256 http-conduit http-types scotty text time transformers wai @@ -123593,7 +124024,7 @@ self: { hspec-wai QuickCheck quickcheck-instances raw-strings-qq scotty text time transformers ]; - homepage = "https://github.com/noraesae/line"; + homepage = "https://github.com/utatti/line"; description = "Haskell SDK for the LINE API"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -123691,14 +124122,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "linear-accelerate_0_5" = callPackage + "linear-accelerate_0_5_0_1" = callPackage ({ mkDerivation, accelerate, base, Cabal, cabal-doctest , distributive, doctest, lens, linear }: mkDerivation { pname = "linear-accelerate"; - version = "0.5"; - sha256 = "1whgf5bxl8knh04n7brgy7a7awdsxkyvkrqqpskyiii5bya21q7r"; + version = "0.5.0.1"; + sha256 = "0khbh6z348pv2jwyfip50hvls7pqa91bwkzks4988vxh54mp2i1l"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ accelerate base distributive lens linear @@ -125890,8 +126321,8 @@ self: { }: mkDerivation { pname = "log-warper"; - version = "1.2.1"; - sha256 = "0qy1i40ypjcsvqy63jgn824a8iclvw49bhnkxab4k5vjhypd78ga"; + version = "1.2.2"; + sha256 = "0hxw0j3zp6vs4si1v8ziy0g2a06smny6fmjqhd9v5hvdcfnqnm9b"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -127318,6 +127749,36 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "lxd-client" = callPackage + ({ mkDerivation, aeson, async, base, bimap, bytestring, connection + , containers, data-default, directory, either, exceptions, filepath + , hspec, hspec-core, http-api-data, http-client, http-client-tls + , http-media, http-types, mtl, network, random, semigroups, servant + , servant-client, text, tls, transformers, turtle, unix, uuid + , websockets, x509, x509-store, x509-validation + }: + mkDerivation { + pname = "lxd-client"; + version = "0.1.0.2"; + sha256 = "1m1rqzbjnd73p6y2iak5fpdq15n52pn2lancvr5s0japw45knqhz"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson async base bimap bytestring connection containers + data-default directory either exceptions filepath http-api-data + http-client http-client-tls http-media http-types mtl network + semigroups servant servant-client text tls transformers unix + websockets x509 x509-store x509-validation + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base exceptions hspec hspec-core random text turtle uuid + ]; + homepage = "https://github.com/hverr/haskell-lxd-client#readme"; + description = "LXD client written in Haskell"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "lye" = callPackage ({ mkDerivation, base, containers, free, HCodecs, lens, parsers , transformers, trifecta @@ -129119,43 +129580,6 @@ self: { }: mkDerivation { pname = "marvin"; - version = "0.2.3"; - sha256 = "0gam200i0d9wd7f2kz4qy7f7wlbkxkbzlacgaamxib6q5dk3kx3r"; - revision = "1"; - editedCabalFile = "1aszssi82ap0y6bkviv3vn6cdh3vb0pv1znvs2z5k52r4wwa8h55"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson base bytestring conduit configurator deepseq hashable - haskeline http-client http-client-tls http-types irc-conduit lens - lifted-async lifted-base marvin-interpolate monad-control - monad-logger monad-loops mtl network-uri optparse-applicative - random stm text text-icu time transformers transformers-base - unordered-containers vector wai warp warp-tls websockets wreq wuss - ]; - executableHaskellDepends = [ - aeson base bytestring configurator directory filepath mustache - optparse-applicative text - ]; - testHaskellDepends = [ base hspec ]; - homepage = "https://marvin.readthedocs.io"; - description = "A framework for modular, portable chat bots"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "marvin_0_2_5" = callPackage - ({ mkDerivation, aeson, base, bytestring, conduit, configurator - , deepseq, directory, filepath, hashable, haskeline, hspec - , http-client, http-client-tls, http-types, irc-conduit, lens - , lifted-async, lifted-base, marvin-interpolate, monad-control - , monad-logger, monad-loops, mtl, mustache, network-uri - , optparse-applicative, random, stm, text, text-icu, time - , transformers, transformers-base, unordered-containers, vector - , wai, warp, warp-tls, websockets, wreq, wuss - }: - mkDerivation { - pname = "marvin"; version = "0.2.5"; sha256 = "0lgmw8gs7alahv9n36fkxzc6fk0485f566vyyjshqfnh019vpgah"; isLibrary = true; @@ -129177,7 +129601,6 @@ self: { homepage = "https://marvin.readthedocs.io"; description = "A framework for modular, portable chat bots"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "marvin-interpolate" = callPackage @@ -131447,8 +131870,8 @@ self: { }: mkDerivation { pname = "micrologger"; - version = "0.4.0.0"; - sha256 = "03np1fkbjqa1lnnpb2fci8r9r8nhbixyjljb9i64fnckj3qvfkj9"; + version = "0.4.0.1"; + sha256 = "0bw552jh0dnrdl1hsbi3pvh0ip3vp3l7z2xqmndq5qayfbqzdpa1"; libraryHaskellDepends = [ aeson base containers text text-format time transformers ]; @@ -132409,19 +132832,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "miso_0_7_8_0" = callPackage + "miso_0_8_0_0" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, lucid - , servant, servant-lucid, text, vector + , servant, servant-lucid, text, transformers, vector }: mkDerivation { pname = "miso"; - version = "0.7.8.0"; - sha256 = "1rzfdd2wcmmc2vmrh5v0blqkjszbpmvx5yhq99c5zss8ir7x4a9w"; + version = "0.8.0.0"; + sha256 = "1z49dd3g30fhk6kvm5lfrzapsbf3381bmgyzsp34f67fdjxmdj8w"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base bytestring containers lucid servant servant-lucid text - vector + transformers vector ]; homepage = "http://github.com/dmjio/miso"; description = "A tasty Haskell front-end framework"; @@ -137225,25 +137648,6 @@ self: { }: mkDerivation { pname = "mysql-simple"; - version = "0.4.2.0"; - sha256 = "0050z2hhdg9zmqczghjc609aaaqjzrxrfly68d4m5046wz4lnkx8"; - libraryHaskellDepends = [ - attoparsec base base16-bytestring blaze-builder blaze-textual - bytestring mysql old-locale pcre-light text time - ]; - testHaskellDepends = [ base hspec ]; - homepage = "https://github.com/paul-rouse/mysql-simple"; - description = "A mid-level MySQL client library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "mysql-simple_0_4_3" = callPackage - ({ mkDerivation, attoparsec, base, base16-bytestring, blaze-builder - , blaze-textual, bytestring, hspec, mysql, old-locale, pcre-light - , text, time - }: - mkDerivation { - pname = "mysql-simple"; version = "0.4.3"; sha256 = "12zryyrjkrglp0r8ra3kcmyksq8g864c5nfxa5d7w3rn9532lzjj"; libraryHaskellDepends = [ @@ -137254,7 +137658,6 @@ self: { homepage = "https://github.com/paul-rouse/mysql-simple"; description = "A mid-level MySQL client library"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "mysql-simple-quasi" = callPackage @@ -137443,8 +137846,8 @@ self: { }: mkDerivation { pname = "nakadi-client"; - version = "0.2.0.1"; - sha256 = "1vg1aflms5hwbx86a9hrs84y9fl6wi2ihgq32ag763kbih3wvcsr"; + version = "0.3.0.0"; + sha256 = "14cr81b6x7cf10zja1vvpqhz9wanq50wwxhkvfx8w1s44skwvasy"; libraryHaskellDepends = [ aeson aeson-casing base bytestring conduit conduit-combinators conduit-extra containers hashable http-client http-client-tls @@ -140107,8 +140510,8 @@ self: { }: mkDerivation { pname = "ngx-export"; - version = "0.8.0.0"; - sha256 = "0l4g7nxa2lhf804q17my3fz7hblzidn1rp2si0b9nnbl9h7264sq"; + version = "0.8.0.6"; + sha256 = "12lynhl8kn5vpp9ajaiv0vylbyzf16bykprjvg16nvvw5maww1ll"; libraryHaskellDepends = [ async base binary bytestring monad-loops template-haskell unix ]; @@ -144749,6 +145152,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "packed-multikey-map" = callPackage + ({ mkDerivation, base, constraints, containers, QuickCheck, tasty + , tasty-hunit, tasty-quickcheck, transformers, vector + }: + mkDerivation { + pname = "packed-multikey-map"; + version = "0.1.0.0"; + sha256 = "19bh697xazsi22krwjgy83hv1pscnaqx544d5pk0q71wnync5m89"; + libraryHaskellDepends = [ + base constraints containers QuickCheck transformers vector + ]; + testHaskellDepends = [ base tasty tasty-hunit tasty-quickcheck ]; + homepage = "https://github.com/leftaroundabout/packed-multikey-map"; + description = "Efficient “spreadsheet table” like maps with multiple marginals"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "packedstring" = callPackage ({ mkDerivation, array, base }: mkDerivation { @@ -145254,18 +145674,20 @@ self: { }) {}; "pandoc-include-code" = callPackage - ({ mkDerivation, base, containers, filepath, pandoc-types - , pcre-heavy, process + ({ mkDerivation, base, filepath, mtl, pandoc-types, process, tasty + , tasty-hunit, text, unordered-containers }: mkDerivation { pname = "pandoc-include-code"; - version = "0.3.0"; - sha256 = "0x3cx817rs1gmc9c9syn7dqlp1xx1mxr5grh19c7462vw9hyp3ji"; - isLibrary = false; + version = "1.1.0.0"; + sha256 = "1ygdmnmr4lw7f83xhqaa7m074ii6wbrsx148i9qx3inz5z2rm9b5"; + isLibrary = true; isExecutable = true; - executableHaskellDepends = [ - base containers filepath pandoc-types pcre-heavy process + libraryHaskellDepends = [ + base filepath mtl pandoc-types process text unordered-containers ]; + executableHaskellDepends = [ base pandoc-types ]; + testHaskellDepends = [ base pandoc-types tasty tasty-hunit ]; homepage = "https://github.com/owickstrom/pandoc-include-code"; description = "A Pandoc filter for including code from source files"; license = stdenv.lib.licenses.mpl20; @@ -145503,6 +145925,27 @@ self: { license = stdenv.lib.licenses.lgpl21; }) {inherit (pkgs.gnome2) pango;}; + "pango_0_13_4_0" = callPackage + ({ mkDerivation, array, base, Cabal, cairo, containers, directory + , filepath, glib, gtk2hs-buildtools, mtl, pango, pretty, process + , text + }: + mkDerivation { + pname = "pango"; + version = "0.13.4.0"; + sha256 = "1m7as420nh55n0hywnl6rbm7zj4s1ry38xvb1gk3np7k87lwf20z"; + enableSeparateDataOutput = true; + setupHaskellDepends = [ base Cabal filepath gtk2hs-buildtools ]; + libraryHaskellDepends = [ + array base cairo containers directory glib mtl pretty process text + ]; + libraryPkgconfigDepends = [ pango ]; + homepage = "http://projects.haskell.org/gtk2hs/"; + description = "Binding to the Pango text rendering engine"; + license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs.gnome2) pango;}; + "panhandle" = callPackage ({ mkDerivation, aeson, base, containers, derive , lazysmallcheck2012, pandoc, pandoc-types, QuickCheck, syb, tagged @@ -146962,8 +147405,8 @@ self: { }: mkDerivation { pname = "pasta"; - version = "0.1.0.2"; - sha256 = "0ycbvj7g47ch6w6vsf4akayh7b9gzg128j3ad937wkvyi31fpdak"; + version = "0.1.0.3"; + sha256 = "05c3gh2cfn9hafwz1cz9wn3axbn90xrp9pr2yq4piwvmbwi7ifxx"; libraryHaskellDepends = [ base microlens microlens-th protolude semigroups text text-show ]; @@ -149223,8 +149666,8 @@ self: { pname = "pgdl"; version = "10.9"; sha256 = "0hwky1331bv1zbjq9nbfnvx8gkbfhs5sjawxjccz9l484xsrbb5z"; - revision = "3"; - editedCabalFile = "0ia214ixkjaz26j998visf4x25g12fwb5z6cpi31r7wz5lhz5z39"; + revision = "4"; + editedCabalFile = "04kg2i0y7yb0577kk8v1v7rgji80agmi0aq350lf0rl77r2ksy85"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -149996,29 +150439,6 @@ self: { "pipes" = callPackage ({ mkDerivation, base, criterion, exceptions, mmorph, mtl - , optparse-applicative, QuickCheck, test-framework - , test-framework-quickcheck2, transformers, void - }: - mkDerivation { - pname = "pipes"; - version = "4.3.4"; - sha256 = "08am4yxn0f2aizyh34g6nwm7l9i2bxd0s38dsfwqm6h0sdvfsffb"; - libraryHaskellDepends = [ - base exceptions mmorph mtl transformers void - ]; - testHaskellDepends = [ - base mtl QuickCheck test-framework test-framework-quickcheck2 - transformers - ]; - benchmarkHaskellDepends = [ - base criterion mtl optparse-applicative transformers - ]; - description = "Compositional pipelines"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "pipes_4_3_5" = callPackage - ({ mkDerivation, base, criterion, exceptions, mmorph, mtl , optparse-applicative, QuickCheck, semigroups, test-framework , test-framework-quickcheck2, transformers, void }: @@ -150038,7 +150458,6 @@ self: { ]; description = "Compositional pipelines"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "pipes-aeson" = callPackage @@ -155557,8 +155976,8 @@ self: { ({ mkDerivation, base, deepseq, mtl, time }: mkDerivation { pname = "progress-reporting"; - version = "1.0.0"; - sha256 = "1y1klrryvq6diibdw8sga03r2rq5cqvd66nhadzc8wbq03azppcd"; + version = "1.1.0"; + sha256 = "02j1i28hcd54w1j9p0d8xzc1bns7swd8js5f6d6ppikc82hlb9bj"; libraryHaskellDepends = [ base deepseq mtl time ]; description = "Functionality for reporting function progress"; license = stdenv.lib.licenses.lgpl3; @@ -155958,8 +156377,8 @@ self: { }: mkDerivation { pname = "propellor"; - version = "4.7.7"; - sha256 = "04aglqwvnw40pxg479mhi1i81547bb7s26qrg9gga8xs1cqgnfbs"; + version = "4.8.1"; + sha256 = "14q1zd6bvrfcs21pklxd6wgiqpb92v0464k4zhq9l31v4k2p5zpk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -156382,23 +156801,6 @@ self: { }: mkDerivation { pname = "protocol-buffers"; - version = "2.4.3"; - sha256 = "1spxilp6zk30ijcr3vqgnzbznc0g3050cy9258931vz2zfkjc6kd"; - libraryHaskellDepends = [ - array base binary bytestring containers directory filepath mtl - parsec syb utf8-string - ]; - homepage = "https://github.com/k-bx/protocol-buffers"; - description = "Parse Google Protocol Buffer specifications"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "protocol-buffers_2_4_4" = callPackage - ({ mkDerivation, array, base, binary, bytestring, containers - , directory, filepath, mtl, parsec, syb, utf8-string - }: - mkDerivation { - pname = "protocol-buffers"; version = "2.4.4"; sha256 = "1qlkilnxfx5grim0hxf7drg2m48z76f88d4r61sy71npybf3mqnv"; libraryHaskellDepends = [ @@ -156408,28 +156810,12 @@ self: { homepage = "https://github.com/k-bx/protocol-buffers"; description = "Parse Google Protocol Buffer specifications"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "protocol-buffers-descriptor" = callPackage ({ mkDerivation, base, bytestring, containers, protocol-buffers }: mkDerivation { pname = "protocol-buffers-descriptor"; - version = "2.4.3"; - sha256 = "1wwn4lwzl0l8bbw99hdh9xizc39hvjr9cxc5sww8f4zh2vbyw99p"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base bytestring containers protocol-buffers - ]; - homepage = "https://github.com/k-bx/protocol-buffers"; - description = "Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "protocol-buffers-descriptor_2_4_4" = callPackage - ({ mkDerivation, base, bytestring, containers, protocol-buffers }: - mkDerivation { - pname = "protocol-buffers-descriptor"; version = "2.4.4"; sha256 = "0jr1clff6vn8lpx2rbc72angn0glc2v18ji5lqgzijri8zya9nqj"; enableSeparateDataOutput = true; @@ -156439,7 +156825,6 @@ self: { homepage = "https://github.com/k-bx/protocol-buffers"; description = "Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "protocol-buffers-descriptor-fork" = callPackage @@ -156734,6 +157119,30 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "psqueues_0_2_4_0" = callPackage + ({ mkDerivation, array, base, containers, criterion, deepseq + , fingertree-psqueue, ghc-prim, hashable, HUnit, mtl, PSQueue + , QuickCheck, random, tagged, test-framework, test-framework-hunit + , test-framework-quickcheck2, unordered-containers + }: + mkDerivation { + pname = "psqueues"; + version = "0.2.4.0"; + sha256 = "1lbjm6mnw91qg1ik73mwh48cq79k4kkaj4l380ilqp0p05a386j9"; + libraryHaskellDepends = [ base deepseq ghc-prim hashable ]; + testHaskellDepends = [ + array base deepseq ghc-prim hashable HUnit QuickCheck tagged + test-framework test-framework-hunit test-framework-quickcheck2 + ]; + benchmarkHaskellDepends = [ + base containers criterion deepseq fingertree-psqueue ghc-prim + hashable mtl PSQueue random unordered-containers + ]; + description = "Pure priority search queues"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "pstemmer" = callPackage ({ mkDerivation, base, text }: mkDerivation { @@ -156749,6 +157158,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pthread" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "pthread"; + version = "0.1.1"; + sha256 = "1b0fqz06yi8g7gpsnkl12dxkkrm00701274f6whk12ixr9d32405"; + libraryHaskellDepends = [ base ]; + homepage = "http://github.com/tweag/pthread"; + description = "Bindings for the pthread library"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "pub" = callPackage ({ mkDerivation, base, bytestring, hedis, optparse-generic, pipes , pipes-bytestring, text @@ -157038,8 +157459,8 @@ self: { ({ mkDerivation, base, containers, libpulseaudio, stm, unix }: mkDerivation { pname = "pulseaudio"; - version = "0.0.2.0"; - sha256 = "13h79hav744nvvkxdhprq061xwz31yh9klp0r4ksmgclgjpsrjvj"; + version = "0.0.2.1"; + sha256 = "12xqclasgqwkwq0wx96qhd6xl98i1amchan71p0r55x5rw2ji0hv"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers stm unix ]; @@ -162140,6 +162561,30 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "references_0_3_3_0" = callPackage + ({ mkDerivation, array, base, containers, directory, either + , filepath, HUnit, instance-control, lens, mtl, template-haskell + , text, transformers, uniplate + }: + mkDerivation { + pname = "references"; + version = "0.3.3.0"; + sha256 = "186x1j6yg2fh4a96b68jq7kwx2s1kxdbl4yi4izfgvxwimpzcr8w"; + libraryHaskellDepends = [ + array base containers directory either filepath instance-control + mtl template-haskell text transformers uniplate + ]; + testHaskellDepends = [ + array base containers directory either filepath HUnit + instance-control lens mtl template-haskell text transformers + uniplate + ]; + homepage = "https://github.com/lazac/references"; + description = "Selectors for reading and updating data"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "refh" = callPackage ({ mkDerivation, base, clippard, cmdargs, directory, filepath , haskheap, network @@ -164463,6 +164908,7 @@ self: { data-default-class hspec hspec-core http-client http-types mtl QuickCheck text time unordered-containers ]; + doCheck = false; homepage = "https://github.com/mrkkrp/req"; description = "Easy-to-use, type-safe, expandable, high-level HTTP library"; license = stdenv.lib.licenses.bsd3; @@ -164492,6 +164938,7 @@ self: { data-default-class hspec hspec-core http-client http-types monad-control mtl QuickCheck retry text time unordered-containers ]; + doCheck = false; homepage = "https://github.com/mrkkrp/req"; description = "Easy-to-use, type-safe, expandable, high-level HTTP library"; license = stdenv.lib.licenses.bsd3; @@ -167827,18 +168274,13 @@ self: { }) {inherit (pkgs) libsodium;}; "salve" = callPackage - ({ mkDerivation, base, criterion, deepseq, doctest, microlens - , semver, semver-range - }: + ({ mkDerivation, base, doctest }: mkDerivation { pname = "salve"; - version = "0.0.8"; - sha256 = "0hss6fqzp3307v52g0n3ryx2grs7v1rh2haxjs4hyi60acrnycb1"; + version = "0.0.9"; + sha256 = "0x16rdrm8i2jwbi1zd7zj43r3h7jb9fzb33b5nbwkwfh397sm11h"; libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest microlens ]; - benchmarkHaskellDepends = [ - base criterion deepseq semver semver-range - ]; + testHaskellDepends = [ base doctest ]; homepage = "https://github.com/tfausak/salve#readme"; description = "Semantic version numbers and constraints"; license = stdenv.lib.licenses.mit; @@ -168643,8 +169085,8 @@ self: { }: mkDerivation { pname = "scat"; - version = "1.1.0.2"; - sha256 = "0dh23v8kx2qnf392afznv3iixvwr4220my9nnlxgz1mhn77d51ln"; + version = "1.1.0.3"; + sha256 = "0i1hmjb91khk3m7r29bb78556mlr9j75gf3pq5fdvz9slq1flagb"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -168815,6 +169257,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "schematic_0_3_0_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, hjsonschema + , hspec, hspec-core, hspec-discover, hspec-smallcheck, HUnit, lens + , mtl, regex-compat, scientific, singletons, smallcheck, tagged + , text, unordered-containers, validationt, vector, vinyl + }: + mkDerivation { + pname = "schematic"; + version = "0.3.0.0"; + sha256 = "0nrq36s646h6lrfqw9hf7ysmc8b2x7dkrj07x1dy2x1ihph5my12"; + libraryHaskellDepends = [ + aeson base bytestring containers hjsonschema mtl regex-compat + scientific singletons smallcheck tagged text unordered-containers + validationt vector vinyl + ]; + testHaskellDepends = [ + aeson base bytestring containers hjsonschema hspec hspec-core + hspec-discover hspec-smallcheck HUnit lens regex-compat singletons + smallcheck tagged text unordered-containers validationt vinyl + ]; + description = "JSON-biased spec and validation tool"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "scholdoc" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, binary, blaze-html , blaze-markup, bytestring, containers, criterion, data-default @@ -171617,37 +172084,6 @@ self: { }: mkDerivation { pname = "servant-checked-exceptions"; - version = "0.4.0.0"; - sha256 = "10visfbj6zjf8b78hzq8c2xb9psdjzq6amqr5wkgbm6qanjab8kd"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring deepseq http-media profunctors servant - servant-client servant-docs servant-server tagged text - ]; - executableHaskellDepends = [ - aeson base http-api-data http-client natural-transformation - optparse-applicative servant servant-client servant-docs - servant-server text wai warp - ]; - testHaskellDepends = [ - base bytestring doctest Glob hspec-wai servant servant-server tasty - tasty-hspec tasty-hunit wai - ]; - homepage = "https://github.com/cdepillabout/servant-checked-exceptions"; - description = "Checked exceptions for Servant APIs"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "servant-checked-exceptions_0_4_1_0" = callPackage - ({ mkDerivation, aeson, base, bytestring, deepseq, doctest, Glob - , hspec-wai, http-api-data, http-client, http-media - , natural-transformation, optparse-applicative, profunctors - , servant, servant-client, servant-docs, servant-server, tagged - , tasty, tasty-hspec, tasty-hunit, text, wai, warp - }: - mkDerivation { - pname = "servant-checked-exceptions"; version = "0.4.1.0"; sha256 = "19h0vywlh6b41mdjpka4b7rz4l6gxmjlvji8nzbgkllsjgr81g3g"; isLibrary = true; @@ -171668,7 +172104,6 @@ self: { homepage = "https://github.com/cdepillabout/servant-checked-exceptions"; description = "Checked exceptions for Servant APIs"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "servant-client" = callPackage @@ -172261,6 +172696,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "servant-purescript_0_9_0_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, directory + , filepath, http-types, lens, mainland-pretty, purescript-bridge + , servant, servant-foreign, servant-server, servant-subscriber + , text + }: + mkDerivation { + pname = "servant-purescript"; + version = "0.9.0.0"; + sha256 = "06r43f36r5y3vzzw5b9ij0pprjdyabr33h6w4h47kg6cdkwmy2sh"; + libraryHaskellDepends = [ + aeson base bytestring containers directory filepath http-types lens + mainland-pretty purescript-bridge servant servant-foreign + servant-server servant-subscriber text + ]; + testHaskellDepends = [ + aeson base containers lens mainland-pretty purescript-bridge + servant servant-foreign servant-subscriber text + ]; + homepage = "https://github.com/eskimor/servant-purescript#readme"; + description = "Generate PureScript accessor functions for you servant API"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "servant-pushbullet-client" = callPackage ({ mkDerivation, aeson, base, http-api-data, http-client , http-client-tls, microlens, microlens-th, pushbullet-types @@ -172337,6 +172797,32 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "servant-rawm" = callPackage + ({ mkDerivation, base, bytestring, filepath, http-client + , http-media, http-types, resourcet, servant, servant-client + , servant-docs, servant-server, text, transformers, wai + , wai-app-static, warp + }: + mkDerivation { + pname = "servant-rawm"; + version = "0.1.0.0"; + sha256 = "0h3s0sca9x612lr2ndv0vccdyscb93amqiwg511rwh6i5y0jrv7d"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring filepath http-client http-media http-types + resourcet servant servant-client servant-docs servant-server wai + wai-app-static + ]; + executableHaskellDepends = [ + base bytestring http-client http-media http-types servant + servant-client servant-server text transformers wai warp + ]; + homepage = "https://github.com/cdepillabout/servant-rawm"; + description = "Embed a raw 'Application' in a Servant API"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "servant-response" = callPackage ({ mkDerivation, aeson, base, http-types, text }: mkDerivation { @@ -173058,6 +173544,47 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "sessiontypes" = callPackage + ({ mkDerivation, base, deepseq, diagrams-lib, diagrams-svg + , directory, exceptions, hspec, mtl, transformers, vector + }: + mkDerivation { + pname = "sessiontypes"; + version = "0.1.0"; + sha256 = "0p5img64ksk2a4in4qamizyp1w59y4hcwv5ll0c0nis7flzyy3js"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base deepseq diagrams-lib diagrams-svg mtl transformers vector + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base directory exceptions hspec ]; + homepage = "https://github.com/Ferdinand-vW/sessiontypes#readme"; + description = "Session types library"; + license = stdenv.lib.licenses.gpl3; + }) {}; + + "sessiontypes-distributed" = callPackage + ({ mkDerivation, base, binary, bytestring, distributed-process + , distributed-static, exceptions, hspec, network-transport-tcp + , rank1dynamic, sessiontypes + }: + mkDerivation { + pname = "sessiontypes-distributed"; + version = "0.1.0"; + sha256 = "1q0y37iwjafcb70fv42hny44ay0bpzbvss48h10dahvsmzpqkk8a"; + libraryHaskellDepends = [ + base binary bytestring distributed-process distributed-static + exceptions rank1dynamic sessiontypes + ]; + testHaskellDepends = [ + base distributed-process hspec network-transport-tcp sessiontypes + ]; + homepage = "https://github.com/Ferdinand-vW/sessiontypes-distributed#readme"; + description = "Session types distributed"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "set-cover" = callPackage ({ mkDerivation, base, containers, enummapset, psqueues, utility-ht }: @@ -173709,6 +174236,26 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "shake-language-c_0_11_0" = callPackage + ({ mkDerivation, base, data-default-class, directory, doctest + , fclabels, hspec, process, shake, split, unordered-containers + }: + mkDerivation { + pname = "shake-language-c"; + version = "0.11.0"; + sha256 = "07ck1y3z3081s1m3yff37z6v2lp0gilqj0jb0l4vphszkckasx11"; + libraryHaskellDepends = [ + base data-default-class fclabels process shake split + unordered-containers + ]; + testHaskellDepends = [ base directory doctest hspec shake ]; + doCheck = false; + homepage = "https://github.com/samplecount/shake-language-c"; + description = "Utilities for cross-compiling with Shake"; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "shake-minify" = callPackage ({ mkDerivation, base, bytestring, css-text, hjsmin, shake, text }: mkDerivation { @@ -173803,8 +174350,8 @@ self: { }: mkDerivation { pname = "shakers"; - version = "0.0.31"; - sha256 = "134v3rzyhf5yv417dp90f9phgm4mdbhc5sv9l44jdbhplnmahh2m"; + version = "0.0.33"; + sha256 = "1wn0bk867nbzcg6c6a8q5sa4ma60r3zc46ykpdla34k61nq5g3qy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -175845,8 +176392,8 @@ self: { ({ mkDerivation, base, containers }: mkDerivation { pname = "simtreelo"; - version = "0.1.1.1"; - sha256 = "0r0vrn4lsl14px7axhigpy3y5hm8q5hwhgzn61qd0s80a8p0r68c"; + version = "0.1.1.2"; + sha256 = "1wn3hycwn0i25jad096g6hzkxrm64j2hpjdpp8lr69mdrcmn2gmx"; libraryHaskellDepends = [ base containers ]; description = "Loader for data organized in a tree"; license = stdenv.lib.licenses.gpl3; @@ -176393,7 +176940,7 @@ self: { license = stdenv.lib.licenses.gpl2; }) {}; - "skylighting_0_4" = callPackage + "skylighting_0_4_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring, binary , blaze-html, bytestring, case-insensitive, containers, criterion , Diff, directory, filepath, HUnit, hxt, mtl, pretty-show, random @@ -176402,8 +176949,8 @@ self: { }: mkDerivation { pname = "skylighting"; - version = "0.4"; - sha256 = "12zr4baf755y1v842mfb17wkv6bfjw46r650yzl29ji5s8fm6v3j"; + version = "0.4.1"; + sha256 = "0dsngs2nw2ijhxxwa8d7fb9rxgqz6kgimbsvxmhpd5s4y6a1ygf4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -177570,54 +178117,6 @@ self: { }: mkDerivation { pname = "snap-server"; - version = "1.0.3.1"; - sha256 = "0zawrbjncb5nbnahx70078sb9ai0dyqzghcn06qgy3vzk195gwfi"; - configureFlags = [ "-fopenssl" ]; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - attoparsec base blaze-builder bytestring bytestring-builder - case-insensitive clock containers filepath HsOpenSSL io-streams - io-streams-haproxy lifted-base mtl network old-locale - openssl-streams snap-core text time unix unix-compat vector - ]; - executableHaskellDepends = [ - attoparsec base blaze-builder bytestring bytestring-builder - case-insensitive clock containers directory HsOpenSSL io-streams - io-streams-haproxy lifted-base mtl network old-locale - openssl-streams snap-core text time transformers unix unix-compat - vector - ]; - testHaskellDepends = [ - attoparsec base base16-bytestring blaze-builder bytestring - bytestring-builder case-insensitive clock containers deepseq - directory filepath HsOpenSSL http-common http-streams HUnit - io-streams io-streams-haproxy lifted-base monad-control mtl network - old-locale openssl-streams parallel QuickCheck random snap-core - test-framework test-framework-hunit test-framework-quickcheck2 text - threads time transformers unix unix-compat vector - ]; - benchmarkHaskellDepends = [ - attoparsec base blaze-builder bytestring bytestring-builder - criterion io-streams io-streams-haproxy snap-core vector - ]; - homepage = "http://snapframework.com/"; - description = "A web server for the Snap Framework"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "snap-server_1_0_3_3" = callPackage - ({ mkDerivation, attoparsec, base, base16-bytestring, blaze-builder - , bytestring, bytestring-builder, case-insensitive, clock - , containers, criterion, deepseq, directory, filepath, HsOpenSSL - , http-common, http-streams, HUnit, io-streams, io-streams-haproxy - , lifted-base, monad-control, mtl, network, old-locale - , openssl-streams, parallel, QuickCheck, random, snap-core - , test-framework, test-framework-hunit, test-framework-quickcheck2 - , text, threads, time, transformers, unix, unix-compat, vector - }: - mkDerivation { - pname = "snap-server"; version = "1.0.3.3"; sha256 = "1vjfpgcl09l974mdsvgxdlqcl68xmn33z1scx3sfyvcnz32xnnkl"; configureFlags = [ "-fopenssl" ]; @@ -177652,7 +178151,6 @@ self: { homepage = "http://snapframework.com/"; description = "A web server for the Snap Framework"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "snap-templates" = callPackage @@ -180876,8 +181374,8 @@ self: { }: mkDerivation { pname = "squeal-postgresql"; - version = "0.1.1.2"; - sha256 = "1kfdyy6an151ans0p4xk102fjgn23hqsgyy05izb4z3mzahk6qij"; + version = "0.1.1.4"; + sha256 = "0s0dl4l6zbxi9a37ybrg8kq7yf642kayr6yjjp21i0wd0sa71b2h"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -181302,7 +181800,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "stache_1_1_2" = callPackage + "stache_1_2_1" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion , deepseq, directory, file-embed, filepath, hspec, hspec-megaparsec , megaparsec, mtl, template-haskell, text, unordered-containers @@ -181310,8 +181808,8 @@ self: { }: mkDerivation { pname = "stache"; - version = "1.1.2"; - sha256 = "1zwl8a8ank1zwssz5yq00mcmvimnn3hcsv8z973gkmwhisp0alrz"; + version = "1.2.1"; + sha256 = "0fqipjyin2hpklm0gaab4qhcfj9gzkpb2g948sqzf1n6alkxvyvb"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers deepseq directory filepath @@ -182680,8 +183178,8 @@ self: { ({ mkDerivation, base, text }: mkDerivation { pname = "stemmer-german"; - version = "0.1.1.0"; - sha256 = "1m0jhmdh51g7cqy51h1xqkdiz8il22xkfq5h4vzabllvyiii3anm"; + version = "0.1.1.1"; + sha256 = "037dw03zb4xdfbzp8js04ymrxii7rsin7pwiansa9khb29w2jqsn"; libraryHaskellDepends = [ base text ]; description = "Extract the stem of a German inflected word form"; license = stdenv.lib.licenses.mit; @@ -183414,15 +183912,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "stratosphere_0_9_0" = callPackage + "stratosphere_0_10_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, hashable , hspec, hspec-discover, lens, template-haskell, text , unordered-containers }: mkDerivation { pname = "stratosphere"; - version = "0.9.0"; - sha256 = "12fx6c6z1fj13y0p6limmfz80ga5xvpz474lnqi5fz5sgnp1cpxa"; + version = "0.10.0"; + sha256 = "195rr247bzrnnvjv7i13z88xbpajxk34n94ywqvfyf3457466iqh"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -185784,37 +186282,6 @@ self: { }: mkDerivation { pname = "swagger2"; - version = "2.1.5"; - sha256 = "1sxv03fgafr21824wcz68l4nvazk6j31z74xa7njg7d3mc5w66pw"; - revision = "1"; - editedCabalFile = "1jv3jbnz0hsfvqnvv6diq4yav85jsqs9b5k1rx7b96nvh1ik3p4q"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - aeson base base-compat bytestring containers generics-sop hashable - http-media insert-ordered-containers lens mtl network scientific - template-haskell text time transformers transformers-compat - unordered-containers uuid-types vector - ]; - testHaskellDepends = [ - aeson aeson-qq base base-compat bytestring containers doctest Glob - hashable hspec HUnit insert-ordered-containers lens mtl QuickCheck - text time unordered-containers vector - ]; - homepage = "https://github.com/GetShopTV/swagger2"; - description = "Swagger 2.0 data model"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "swagger2_2_1_6" = callPackage - ({ mkDerivation, aeson, aeson-qq, base, base-compat, bytestring - , Cabal, cabal-doctest, containers, doctest, generics-sop, Glob - , hashable, hspec, http-media, HUnit, insert-ordered-containers - , lens, mtl, network, QuickCheck, scientific, template-haskell - , text, time, transformers, transformers-compat - , unordered-containers, uuid-types, vector - }: - mkDerivation { - pname = "swagger2"; version = "2.1.6"; sha256 = "01a29h56vfyw0ilij1pn6qwy50ca90kyj884vs1q52vvh572758j"; setupHaskellDepends = [ base Cabal cabal-doctest ]; @@ -185832,7 +186299,6 @@ self: { homepage = "https://github.com/GetShopTV/swagger2"; description = "Swagger 2.0 data model"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "swapper" = callPackage @@ -186211,6 +186677,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) gmp; inherit (pkgs) gmpxx; symengine = null;}; + "symmetric-properties" = callPackage + ({ mkDerivation, base, containers, hspec, HUnit }: + mkDerivation { + pname = "symmetric-properties"; + version = "0.1.0.0"; + sha256 = "10q6w071fa9nyrg7kz9zil3jz7xpvp5l8ni4kddra10dp2hnwg80"; + libraryHaskellDepends = [ base containers ]; + testHaskellDepends = [ base hspec HUnit ]; + homepage = "https://github.com/joelburget/symmetric-properties#readme"; + description = "Monoids for sameness and uniqueness"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "symon" = callPackage ({ mkDerivation, ansi-terminal, base, monad-loops, random }: mkDerivation { @@ -188370,12 +188849,12 @@ self: { hydraPlatforms = [ "i686-linux" "x86_64-linux" ]; }) {}; - "tasty-dejafu_0_7_0_0" = callPackage + "tasty-dejafu_0_7_0_1" = callPackage ({ mkDerivation, base, dejafu, random, tagged, tasty }: mkDerivation { pname = "tasty-dejafu"; - version = "0.7.0.0"; - sha256 = "0713gck8zdcd303zaq52g0ca9x28arwj9n1brfyzqscac95bcccc"; + version = "0.7.0.1"; + sha256 = "01n9j9sc4lvm0s2giwqc5ig16jyww61h81m0bcjk2jzmnsk9mp7g"; libraryHaskellDepends = [ base dejafu random tagged tasty ]; homepage = "https://github.com/barrucadu/dejafu"; description = "Deja Fu support for the Tasty test framework"; @@ -188404,15 +188883,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "tasty-discover_4_0_0" = callPackage + "tasty-discover_4_1_1" = callPackage ({ mkDerivation, base, containers, directory, filepath, Glob , hedgehog, tasty, tasty-hedgehog, tasty-hspec, tasty-hunit , tasty-quickcheck, tasty-smallcheck }: mkDerivation { pname = "tasty-discover"; - version = "4.0.0"; - sha256 = "00nz89sgdx3l4ba0l85qgab1g0ywqa0yl7c1ypglqldpyqnbg4g6"; + version = "4.1.1"; + sha256 = "0lsz73rnvwb6z522bxfhlslvvymnjw7kw4fs8llwr3w6cvzl5vfj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -190540,8 +191019,8 @@ self: { ({ mkDerivation, base, haskell-src-meta, template-haskell }: mkDerivation { pname = "testCom"; - version = "0.1.0"; - sha256 = "0wwh32sn5vgsm1yy741mp57ng17dwsailkz6isa37r71lcvaqj98"; + version = "0.2.0"; + sha256 = "1gp8ylpp6315srcr1pi78a9f6kr24kp5dyfml9yibj35qd6wdil2"; libraryHaskellDepends = [ base haskell-src-meta template-haskell ]; testHaskellDepends = [ base haskell-src-meta template-haskell ]; description = "Write your tests in comments"; @@ -190712,6 +191191,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "texbuilder" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, bytestring, containers + , cryptonite, deepseq, directory, extra, filepath, hinotify, mtl + , optparse-applicative, process, temporary, unix + }: + mkDerivation { + pname = "texbuilder"; + version = "0.1.1.1"; + sha256 = "14fg4hxyfvv54n85495dbk6avccms92kw5jzgycylnk8aiw2nxa4"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + ansi-wl-pprint base bytestring containers cryptonite deepseq + directory extra filepath hinotify mtl optparse-applicative process + temporary unix + ]; + homepage = "https://gitlab.com/xaverdh/tex-builder#texbuilder"; + description = "View your latex output while editing"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "texmath" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath , mtl, network-uri, pandoc-types, parsec, process, split, syb @@ -192715,31 +193215,6 @@ self: { }: mkDerivation { pname = "threepenny-gui"; - version = "0.8.1.0"; - sha256 = "13wafs0m9qiadnc9pyzhs8xc5lk7k4cd1fspm938r1jnwslj05ch"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson async base bytestring containers data-default deepseq - exceptions file-embed filepath hashable network-uri safe snap-core - snap-server stm template-haskell text transformers - unordered-containers vault vector websockets websockets-snap - ]; - homepage = "http://wiki.haskell.org/Threepenny-gui"; - description = "GUI framework that uses the web browser as a display"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "threepenny-gui_0_8_2_0" = callPackage - ({ mkDerivation, aeson, async, base, bytestring, containers - , data-default, deepseq, exceptions, file-embed, filepath, hashable - , network-uri, safe, snap-core, snap-server, stm, template-haskell - , text, transformers, unordered-containers, vault, vector - , websockets, websockets-snap - }: - mkDerivation { - pname = "threepenny-gui"; version = "0.8.2.0"; sha256 = "1qmvrkha68f30kdv8hvdkj25sgsski7rnd6dqmvbhqrn6fpsqm8r"; isLibrary = true; @@ -192754,7 +193229,6 @@ self: { homepage = "http://wiki.haskell.org/Threepenny-gui"; description = "GUI framework that uses the web browser as a display"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "threepenny-gui-contextmenu" = callPackage @@ -194118,6 +194592,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "tinyfiledialogs" = callPackage + ({ mkDerivation, base, c2hs, text }: + mkDerivation { + pname = "tinyfiledialogs"; + version = "0.2.0.0"; + sha256 = "16vzn532204vs39lfsf7q20zkhncqgk1vzqls9x2cy8kzdzrqlm4"; + libraryHaskellDepends = [ base text ]; + libraryToolDepends = [ c2hs ]; + homepage = "https://github.com/mtolly/tinyfiledialogs"; + description = "Wrapper around the 'tiny file dialogs' C library"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "tinylog" = callPackage ({ mkDerivation, base, bytestring, containers, criterion , double-conversion, fast-logger, text, transformers, unix-time @@ -194510,27 +194997,6 @@ self: { }: mkDerivation { pname = "tmp-postgres"; - version = "0.1.0.8"; - sha256 = "11cs5cq99gxkfj0x14kkcsn6mnh9c7d8hw1kdj598fy1gic5c94n"; - libraryHaskellDepends = [ - base directory network process temporary unix - ]; - testHaskellDepends = [ - base bytestring directory hspec hspec-discover postgresql-simple - process temporary - ]; - homepage = "https://github.com/jfischoff/tmp-postgres#readme"; - description = "Start and stop a temporary postgres for testing"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "tmp-postgres_0_1_1_0" = callPackage - ({ mkDerivation, base, bytestring, directory, hspec, hspec-discover - , network, postgresql-simple, process, temporary, unix - }: - mkDerivation { - pname = "tmp-postgres"; version = "0.1.1.0"; sha256 = "1afmj859c1yl2lfvjqzvwx24hdrp8lf3v9zp7n56p9n6q74mknr0"; libraryHaskellDepends = [ @@ -195973,6 +196439,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "treefold" = callPackage + ({ mkDerivation, base, containers, criterion, doctest, hedgehog + , parallel, random + }: + mkDerivation { + pname = "treefold"; + version = "0.1.0.0"; + sha256 = "1svpbrvw7j35kp25mcddallfl9miafdyb2dm2wbmj461sh95qd7g"; + libraryHaskellDepends = [ base parallel ]; + testHaskellDepends = [ base doctest hedgehog ]; + benchmarkHaskellDepends = [ base containers criterion random ]; + homepage = "https://github.com/oisdk/treefold"; + license = stdenv.lib.licenses.mit; + }) {}; + "treemap" = callPackage ({ mkDerivation, base, containers, deepseq, semigroups, strict , tasty, tasty-hunit, text, transformers @@ -196893,7 +197374,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "turtle_1_4_3" = callPackage + "turtle_1_4_4" = callPackage ({ mkDerivation, ansi-wl-pprint, async, base, bytestring, clock , criterion, directory, doctest, foldl, hostname, managed , optional-args, optparse-applicative, process, semigroups, stm @@ -196902,8 +197383,8 @@ self: { }: mkDerivation { pname = "turtle"; - version = "1.4.3"; - sha256 = "0dyb99p1ymcjbpi0w3ksj0aj2pzs6fb6vp1n7m2bb1h5dp15rzrf"; + version = "1.4.4"; + sha256 = "0ixq9fdmcg2adiy9zgg3qmk6dwdahyw95aaqnf98jxi2j1h2aijz"; libraryHaskellDepends = [ ansi-wl-pprint async base bytestring clock directory foldl hostname managed optional-args optparse-applicative process semigroups stm @@ -200741,6 +201222,37 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "uri-bytestring_0_3_0_0" = callPackage + ({ mkDerivation, attoparsec, base, base-compat, blaze-builder + , bytestring, containers, criterion, deepseq, deepseq-generics + , fail, generics-sop, HUnit, network-uri, QuickCheck + , quickcheck-instances, semigroups, tasty, tasty-hunit + , tasty-quickcheck, template-haskell, th-lift-instances + , transformers + }: + mkDerivation { + pname = "uri-bytestring"; + version = "0.3.0.0"; + sha256 = "0slbwh138y3j0mb50g39ylr18l80vn6hsszm83d9797nlh0nb5rn"; + libraryHaskellDepends = [ + attoparsec base blaze-builder bytestring containers fail + template-haskell th-lift-instances + ]; + testHaskellDepends = [ + attoparsec base base-compat blaze-builder bytestring containers + generics-sop HUnit QuickCheck quickcheck-instances semigroups tasty + tasty-hunit tasty-quickcheck transformers + ]; + benchmarkHaskellDepends = [ + base blaze-builder bytestring criterion deepseq deepseq-generics + network-uri + ]; + homepage = "https://github.com/Soostone/uri-bytestring"; + description = "Haskell URI parsing as ByteStrings"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "uri-bytestring-aeson" = callPackage ({ mkDerivation, aeson, base, bytestring, text, uri-bytestring }: mkDerivation { @@ -200755,6 +201267,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "uri-bytestring-aeson_0_1_0_4" = callPackage + ({ mkDerivation, aeson, base, bytestring, text, uri-bytestring }: + mkDerivation { + pname = "uri-bytestring-aeson"; + version = "0.1.0.4"; + sha256 = "1nm9d3xq56rrjggky28q72n8afk5nh6m1bbi6j5z538qwccyg348"; + libraryHaskellDepends = [ + aeson base bytestring text uri-bytestring + ]; + homepage = "https://github.com/reactormonk/uri-bytestring-aeson"; + description = "Aeson instances for URI Bytestring"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "uri-conduit" = callPackage ({ mkDerivation, base, bytestring, conduit, containers, deepseq , failure, monad-control, network, system-fileio, system-filepath @@ -207500,8 +208027,8 @@ self: { }: mkDerivation { pname = "wide-word"; - version = "0.1.0.3"; - sha256 = "0ygq4h0ihwjxmndd30j2y9sdghnysh78izszg8fdhdl7ncnmpv70"; + version = "0.1.0.5"; + sha256 = "0aj0jpj2w46fdzvddc76l62cmcwvsndc1vj6z391bybw4q8khlmd"; libraryHaskellDepends = [ base deepseq ghc-prim ]; testHaskellDepends = [ base bytestring ghc-prim hspec QuickCheck ]; homepage = "https://github.com/erikd/wide-word"; @@ -210148,6 +210675,24 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "xml-conduit-writer_0_1_1_2" = callPackage + ({ mkDerivation, base, containers, data-default, dlist, mtl, text + , xml-conduit, xml-types + }: + mkDerivation { + pname = "xml-conduit-writer"; + version = "0.1.1.2"; + sha256 = "0n5fk6sj5grcfz51psbf8h4z40hd4dk8zpk870c6ipm2s9dc1488"; + libraryHaskellDepends = [ + base containers data-default dlist mtl text xml-conduit xml-types + ]; + testHaskellDepends = [ base text ]; + homepage = "https://bitbucket.org/dpwiz/xml-conduit-writer"; + description = "Warm and fuzzy creation of XML documents"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "xml-enumerator" = callPackage ({ mkDerivation, attoparsec, attoparsec-enumerator, base , blaze-builder, blaze-builder-enumerator, bytestring, containers @@ -210226,6 +210771,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "xml-hamlet_0_4_1_1" = callPackage + ({ mkDerivation, base, containers, hspec, HUnit, parsec + , shakespeare, template-haskell, text, xml-conduit + }: + mkDerivation { + pname = "xml-hamlet"; + version = "0.4.1.1"; + sha256 = "0bfhk3hdg70j91g5i9ygz0nmbpffnxa4kh5h828fdgml54i5sv2d"; + libraryHaskellDepends = [ + base containers parsec shakespeare template-haskell text + xml-conduit + ]; + testHaskellDepends = [ + base containers hspec HUnit parsec shakespeare template-haskell + text xml-conduit + ]; + homepage = "http://www.yesodweb.com/"; + description = "Hamlet-style quasiquoter for XML content"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "xml-helpers" = callPackage ({ mkDerivation, base, xml }: mkDerivation { @@ -210303,16 +210870,19 @@ self: { "xml-isogen" = callPackage ({ mkDerivation, base, dom-parser, lens, mtl, QuickCheck - , semigroups, template-haskell, text, xml-conduit-writer + , semigroups, template-haskell, text, xml-conduit + , xml-conduit-writer }: mkDerivation { pname = "xml-isogen"; - version = "0.1.0"; - sha256 = "1bjy00an6ccrw8x1hpd5fwa4acgd00xn0kzhaj0w60g174cnfrmf"; + version = "0.2.0"; + sha256 = "1dmf660cyrs96ih1swlw44spd2g05dfikpak9mmjag40mab36116"; libraryHaskellDepends = [ base dom-parser lens mtl QuickCheck semigroups template-haskell - text xml-conduit-writer + text xml-conduit xml-conduit-writer ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/typeable/xml-isogen"; description = "Generate XML-isomorphic types"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -211895,8 +212465,8 @@ self: { }: mkDerivation { pname = "yate"; - version = "0.1.0.1"; - sha256 = "01ijsfvi9whasxqv1iydmi123lc4kwy3qhg70kc6h1vsfzcwz94g"; + version = "0.1.0.2"; + sha256 = "1wb9y69fgyqngfl8nddrsk22d532cba62av99qkd9xgjgsm61ki1"; libraryHaskellDepends = [ aeson attoparsec base mtl scientific template-haskell text unordered-containers vector diff --git a/pkgs/development/interpreters/clojure/default.nix b/pkgs/development/interpreters/clojure/default.nix index 8c724577359b..ed2c4db20f7c 100644 --- a/pkgs/development/interpreters/clojure/default.nix +++ b/pkgs/development/interpreters/clojure/default.nix @@ -20,10 +20,10 @@ stdenv.mkDerivation { makeWrapper ${jdk.jre}/bin/java $out/bin/clojure --add-flags "-cp $out/share/java/clojure.jar clojure.main" ''; - meta = { + meta = with stdenv.lib; { description = "A Lisp dialect for the JVM"; homepage = https://clojure.org/; - license = stdenv.lib.licenses.bsd3; + license = licenses.epl10; longDescription = '' Clojure is a dynamic programming language that targets the Java Virtual Machine. It is designed to be a general-purpose language, @@ -43,7 +43,7 @@ stdenv.mkDerivation { offers a software transactional memory system and reactive Agent system that ensure clean, correct, multithreaded designs. ''; - maintainers = with stdenv.lib.maintainers; [ the-kenny ]; - platforms = with stdenv.lib.platforms; unix; + maintainers = with maintainers; [ the-kenny ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/interpreters/elixir/generic-builder.nix b/pkgs/development/interpreters/elixir/generic-builder.nix index 8f83a338484c..78598ce3d81e 100644 --- a/pkgs/development/interpreters/elixir/generic-builder.nix +++ b/pkgs/development/interpreters/elixir/generic-builder.nix @@ -22,6 +22,8 @@ in buildInputs = [ erlang rebar makeWrapper ]; + LOCALE_ARCHIVE = stdenv.lib.optionalString stdenv.isLinux + "${pkgs.glibcLocales}/lib/locale/locale-archive"; LANG = "en_US.UTF-8"; LC_TYPE = "en_US.UTF-8"; @@ -30,8 +32,8 @@ in inherit debugInfo; buildFlags = if debugInfo - then "ERL_COMPILER_OPTIONS=debug_info" - else ""; + then "ERL_COMPILER_OPTIONS=debug_info" + else ""; preBuild = '' # The build process uses ./rebar. Link it to the nixpkgs rebar diff --git a/pkgs/development/interpreters/php/default.nix b/pkgs/development/interpreters/php/default.nix index ed018a942273..e1704a2ec488 100644 --- a/pkgs/development/interpreters/php/default.nix +++ b/pkgs/development/interpreters/php/default.nix @@ -330,12 +330,12 @@ in { }; php70 = generic { - version = "7.0.22"; - sha256 = "1ppxdlyb9vapcmzylml447vrlizam72h1w41vvn15pdbd5zv5q48"; + version = "7.0.24"; + sha256 = "06fgpljz6xpxxkpf4cv9rqz8g504l9ikbw5aq0hqh5sgd611kycv"; }; php71 = generic { - version = "7.1.8"; - sha256 = "1y527hs9yh9lmr38q3rf7gkhnvk49vh4nyhci6852mjhjh5a0r3h"; + version = "7.1.9"; + sha256 = "1blvzm2js8mrdbmwks0v6nlb5wj4789ixzmlxm1l8z6xvw8cqk9i"; }; } diff --git a/pkgs/development/interpreters/racket/default.nix b/pkgs/development/interpreters/racket/default.nix index fbb07468e5cb..1a9475df2846 100644 --- a/pkgs/development/interpreters/racket/default.nix +++ b/pkgs/development/interpreters/racket/default.nix @@ -82,6 +82,6 @@ stdenv.mkDerivation rec { homepage = http://racket-lang.org/; license = licenses.lgpl3; maintainers = with maintainers; [ kkallio henrytill vrthra ]; - platforms = platforms.x86_64; + platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/development/interpreters/ruby/default.nix b/pkgs/development/interpreters/ruby/default.nix index b4cd9f3f4180..2e7d7f97819a 100644 --- a/pkgs/development/interpreters/ruby/default.nix +++ b/pkgs/development/interpreters/ruby/default.nix @@ -204,11 +204,11 @@ in { }; }; - ruby_2_3_4 = generic { - version = rubyVersion "2" "3" "4" ""; + ruby_2_3_5 = generic { + version = rubyVersion "2" "3" "5" ""; sha256 = { - src = "1hy0zr4vwkqcjbykh2hp0d6ifkrhgskaxlzy6878sc9kr4bqzqcq"; - git = "0jjhgdjv3aayxb0flxjiny7xfzh3ggrqcpvgjv2ydm25padfbqmp"; + src = "1k6x4g68lq30i0myip5bn56rcbwjxmqq95j1fkdgbvwbnaxzfqjl"; + git = "0spwqz4b5xxqzs13azsd4xz4jkc3is7d9q4s6s2qilb8ib4863jl"; }; }; diff --git a/pkgs/development/interpreters/ruby/patchsets.nix b/pkgs/development/interpreters/ruby/patchsets.nix index cdf1bf26717f..5bc1b858425b 100644 --- a/pkgs/development/interpreters/ruby/patchsets.nix +++ b/pkgs/development/interpreters/ruby/patchsets.nix @@ -29,7 +29,7 @@ rec { "${patchSet}/patches/ruby/2.2/head/railsexpress/02-improve-gc-stats.patch" "${patchSet}/patches/ruby/2.2/head/railsexpress/03-display-more-detailed-stack-trace.patch" ]; - "2.3.4" = ops useRailsExpress [ + "2.3.5" = ops useRailsExpress [ "${patchSet}/patches/ruby/2.3/head/railsexpress/01-skip-broken-tests.patch" "${patchSet}/patches/ruby/2.3/head/railsexpress/02-improve-gc-stats.patch" "${patchSet}/patches/ruby/2.3/head/railsexpress/03-display-more-detailed-stack-trace.patch" diff --git a/pkgs/development/libraries/agda/agda-stdlib/default.nix b/pkgs/development/libraries/agda/agda-stdlib/default.nix index 866bccd3fd61..815e0f20b54e 100644 --- a/pkgs/development/libraries/agda/agda-stdlib/default.nix +++ b/pkgs/development/libraries/agda/agda-stdlib/default.nix @@ -1,14 +1,14 @@ { stdenv, agda, fetchFromGitHub, ghcWithPackages }: agda.mkDerivation (self: rec { - version = "0.13"; + version = "0.14"; name = "agda-stdlib-${version}"; src = fetchFromGitHub { repo = "agda-stdlib"; owner = "agda"; rev = "v${version}"; - sha256 = "156xbqvqjck9izz613v52ppwk8s1y0kv7xkjpcm16vys2c3bh0x5"; + sha256 = "0qx72w6lwskp18q608f95j5dcxb9xr4q4mzdkxp01sgib8v2v56l"; }; nativeBuildInputs = [ (ghcWithPackages (self : [ self.filemanip ])) ]; diff --git a/pkgs/development/libraries/amrwb/default.nix b/pkgs/development/libraries/amrwb/default.nix index e1c729050d4f..15331c22599b 100644 --- a/pkgs/development/libraries/amrwb/default.nix +++ b/pkgs/development/libraries/amrwb/default.nix @@ -1,33 +1,25 @@ -{stdenv, fetchurl, unzip}: +{ stdenv, fetchurl, unzip }: -stdenv.mkDerivation { - # The 'src' 7.0.0.3 expects amrwb 700, but there is only 710 available now, - # so I guess in 3gpp they updated to 7.1.0, but amrwb did not update the libraries. - # I guess amrwb uses the first version numbers to match those of 3gpp, - # so I set the name to 7.1.0.3 in this case - name = "amrwb-7.1.0.3"; +stdenv.mkDerivation rec { + name = "amrwb-${version}"; + version = "11.0.0.0"; srcAmr = fetchurl { - url = http://www.3gpp.org/ftp/Specs/latest/Rel-7/26_series/26204-710.zip; - sha256 = "1wnx72m20y8bdlyndyy8rskr0hi4llk1h1hcr34awxfmi9l4922i"; + url = http://www.3gpp.org/ftp/Specs/archive/26_series/26.204/26204-b00.zip; + sha256 = "1v4zhs6f1mf1xkrzhljh05890in0rpr5d5pcak9h4igxhd2c91f8"; }; src = fetchurl { - url = http://www.penguin.cz/~utx/ftp/amr/amrwb-7.0.0.3.tar.bz2; - sha256 = "0nn94i3gw3d5fgks43wdhshdlhpd4rcrzj46f2vsby0viwkxxp8z"; + url = "http://www.penguin.cz/~utx/ftp/amr/amrwb-${version}.tar.bz2"; + sha256 = "1p6m9nd08mv525w14py9qzs9zwsa5i3vxf5bgcmcvc408jqmkbsw"; }; buildInputs = [ unzip ]; - patchPhase = '' - sed -i s/26204-700/26204-710/g Makefile.am Makefile.in configure configure.ac \ - prepare_sources.sh.in - ''; - configureFlags = [ "--cache-file=config.cache" "--with-downloader=true" ]; postConfigure = '' - cp $srcAmr 26204-710.zip + cp $srcAmr 26204-b00.zip ''; meta = { diff --git a/pkgs/development/libraries/at-spi2-atk/default.nix b/pkgs/development/libraries/at-spi2-atk/default.nix index 30fe8173e86f..3aef90594a15 100644 --- a/pkgs/development/libraries/at-spi2-atk/default.nix +++ b/pkgs/development/libraries/at-spi2-atk/default.nix @@ -2,14 +2,14 @@ , intltool, dbus_glib, at_spi2_core, libSM }: stdenv.mkDerivation rec { - versionMajor = "2.24"; - versionMinor = "1"; + versionMajor = "2.26"; + versionMinor = "0"; moduleName = "at-spi2-atk"; name = "${moduleName}-${versionMajor}.${versionMinor}"; src = fetchurl { url = "mirror://gnome/sources/${moduleName}/${versionMajor}/${name}.tar.xz"; - sha256 = "60dc90ac4f74b8ffe96a9363c25208a443b381bacecfefea6de549f20ed6957d"; + sha256 = "d25e528e1406a10c7d9b675aa15e638bcbf0a122ca3681f655a30cce83272fb9"; }; buildInputs = [ python pkgconfig popt atk libX11 libICE xorg.libXtst libXi diff --git a/pkgs/development/libraries/at-spi2-core/default.nix b/pkgs/development/libraries/at-spi2-core/default.nix index 4d496932f669..bd8588f9771f 100644 --- a/pkgs/development/libraries/at-spi2-core/default.nix +++ b/pkgs/development/libraries/at-spi2-core/default.nix @@ -2,14 +2,14 @@ , libX11, xextproto, libSM, libICE, libXtst, libXi, gobjectIntrospection }: stdenv.mkDerivation rec { - versionMajor = "2.24"; - versionMinor = "1"; + versionMajor = "2.26"; + versionMinor = "0"; moduleName = "at-spi2-core"; name = "${moduleName}-${versionMajor}.${versionMinor}"; src = fetchurl { url = "mirror://gnome/sources/${moduleName}/${versionMajor}/${name}.tar.xz"; - sha256 = "1e90d064b937aacfe79a96232ac7e63d28d716e85bd9ff4333f865305a959b5b"; + sha256 = "511568a65fda11fdd5ba5d4adfd48d5d76810d0e6ba4f7460f1b2ec0dbbbc337"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/atk/default.nix b/pkgs/development/libraries/atk/default.nix index cd2ffe556647..1574d8d037c7 100644 --- a/pkgs/development/libraries/atk/default.nix +++ b/pkgs/development/libraries/atk/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, pkgconfig, perl, glib, libintlOrEmpty, gobjectIntrospection }: let - ver_maj = "2.22"; + ver_maj = "2.26"; ver_min = "0"; in stdenv.mkDerivation rec { @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://gnome/sources/atk/${ver_maj}/${name}.tar.xz"; - sha256 = "d349f5ca4974c9c76a4963e5b254720523b0c78672cbc0e1a3475dbd9b3d44b6"; + sha256 = "eafe49d5c4546cb723ec98053290d7e0b8d85b3fdb123938213acb7bb4178827"; }; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/cpp-hocon/default.nix b/pkgs/development/libraries/cpp-hocon/default.nix index 6014c9f4eafe..236d634a514b 100644 --- a/pkgs/development/libraries/cpp-hocon/default.nix +++ b/pkgs/development/libraries/cpp-hocon/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "cpp-hocon-${version}"; - version = "0.1.5"; + version = "0.1.6"; src = fetchFromGitHub { - sha256 = "0fc5468458mz572nbp45x5sblp6dsb4d1b6jqv77zf3mx5xyziz7"; + sha256 = "0qf2nqp28ahypnzjrr37f54i06ylni40y18q9kwp5s7i5cwbjqgc"; rev = version; repo = "cpp-hocon"; owner = "puppetlabs"; @@ -15,6 +15,8 @@ stdenv.mkDerivation rec { buildInputs = [ boost curl leatherman ]; + enableParallelBuilding = true; + meta = with stdenv.lib; { inherit (src.meta) homepage; description = " A C++ port of the Typesafe Config library"; diff --git a/pkgs/development/libraries/cwiid/default.nix b/pkgs/development/libraries/cwiid/default.nix index fb5431ff8d59..606058da8545 100644 --- a/pkgs/development/libraries/cwiid/default.nix +++ b/pkgs/development/libraries/cwiid/default.nix @@ -1,12 +1,14 @@ -{ stdenv, autoreconfHook, fetchgit, bison, flex, bluez, pkgconfig, gtk2 }: +{ stdenv, fetchFromGitHub, autoreconfHook, bison, flex, bluez, pkgconfig, gtk2 }: stdenv.mkDerivation rec { - name = "cwiid-2010-02-21-git"; - - src = fetchgit { - url = https://github.com/abstrakraft/cwiid; - sha256 = "0qdb0x757k76nfj32xc2nrrdqd9jlwgg63vfn02l2iznnzahxp0h"; - rev = "fadf11e89b579bcc0336a0692ac15c93785f3f82"; + name = "cwiid-${version}-git"; + version = "2010-02-21"; + + src = fetchFromGitHub { + owner = "abstrakraft"; + repo = "cwiid"; + rev = "fadf11e89b579bcc0336a0692ac15c93785f3f82"; + sha256 = "0qdb0x757k76nfj32xc2nrrdqd9jlwgg63vfn02l2iznnzahxp0h"; }; hardeningDisable = [ "format" ]; @@ -17,18 +19,20 @@ stdenv.mkDerivation rec { sed -i -e '/$(LDCONFIG)/d' common/include/lib.mak.in ''; - buildInputs = [ autoreconfHook bison flex bluez pkgconfig gtk2 ]; + buildInputs = [ bison flex bluez gtk2 ]; + + nativeBuildInputs = [ autoreconfHook pkgconfig ]; postInstall = '' # Some programs (for example, cabal-install) have problems with the double 0 sed -i -e "s/0.6.00/0.6.0/" $out/lib/pkgconfig/cwiid.pc ''; - meta = { + meta = with stdenv.lib; { description = "Linux Nintendo Wiimote interface"; - homepage = http://cwiid.org; - license = stdenv.lib.licenses.gpl2Plus; - maintainers = [ stdenv.lib.maintainers.bennofs ]; - platforms = stdenv.lib.platforms.linux; + homepage = http://cwiid.org; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ bennofs ]; + platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/glfw/2.x.nix b/pkgs/development/libraries/glfw/2.x.nix index 00b9cff95764..a017ff3d988c 100644 --- a/pkgs/development/libraries/glfw/2.x.nix +++ b/pkgs/development/libraries/glfw/2.x.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, mesa, libX11 }: +{ stdenv, fetchurl, mesa_glu, mesa_noglu, libX11, libXext }: stdenv.mkDerivation rec { name = "glfw-2.7.9"; @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { sha256 = "17c2msdcb7pn3p8f83805h1c216bmdqnbn9hgzr1j8wnwjcpxx6i"; }; - buildInputs = [ mesa libX11 ]; + buildInputs = [ mesa_glu mesa_noglu libX11 libXext ]; buildPhase = '' make x11 diff --git a/pkgs/development/libraries/glfw/3.x.nix b/pkgs/development/libraries/glfw/3.x.nix index 52673061b72c..c10b3c05986a 100644 --- a/pkgs/development/libraries/glfw/3.x.nix +++ b/pkgs/development/libraries/glfw/3.x.nix @@ -1,5 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, mesa, libXrandr, libXi, libXxf86vm, libXfixes, xlibsWrapper -, libXinerama, libXcursor +{ stdenv, lib, fetchFromGitHub, cmake, mesa_noglu, libXrandr, libXinerama, libXcursor, libX11 , darwin, fixDarwinDylibNames }: @@ -16,12 +15,15 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + propagatedBuildInputs = [ mesa_noglu ]; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ - cmake mesa libXrandr libXi libXxf86vm libXfixes xlibsWrapper - libXinerama libXcursor - ] ++ stdenv.lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa Kernel fixDarwinDylibNames ]); + libX11 libXrandr libXinerama libXcursor + ] ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa Kernel fixDarwinDylibNames ]); - cmakeFlags = "-DBUILD_SHARED_LIBS=ON"; + cmakeFlags = [ "-DBUILD_SHARED_LIBS=ON" ]; meta = with stdenv.lib; { description = "Multi-platform library for creating OpenGL contexts and managing input, including keyboard, mouse, joystick and time"; diff --git a/pkgs/development/libraries/glib/default.nix b/pkgs/development/libraries/glib/default.nix index e76e48ad8fc0..39140eaf5196 100644 --- a/pkgs/development/libraries/glib/default.nix +++ b/pkgs/development/libraries/glib/default.nix @@ -42,8 +42,8 @@ let ln -sr -t "''${!outputInclude}/include/" "''${!outputInclude}"/lib/*/include/* 2>/dev/null || true ''; - ver_maj = "2.52"; - ver_min = "3"; + ver_maj = "2.54"; + ver_min = "0"; in stdenv.mkDerivation rec { @@ -51,10 +51,11 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://gnome/sources/glib/${ver_maj}/${name}.tar.xz"; - sha256 = "0a71wkkhkvad84gm30w13micxxgqqw3sxhybj7nd9z60lwspdvi5"; + sha256 = "fe22998ff0394ec31e6e5511c379b74011bee61a4421bca7fcab223dfbe0fc6a"; }; - patches = optional stdenv.isDarwin ./darwin-compilation.patch ++ optional doCheck ./skip-timer-test.patch; + patches = optional stdenv.isDarwin ./darwin-compilation.patch + ++ optional doCheck ./skip-timer-test.patch; outputs = [ "out" "dev" "devdoc" ]; outputBin = "dev"; @@ -76,21 +77,23 @@ stdenv.mkDerivation rec { ++ optional (stdenv.isFreeBSD || stdenv.isSunOS) "--with-libiconv=gnu" ++ optional stdenv.isSunOS "--disable-dtrace"; - NIX_CFLAGS_COMPILE = optionalString stdenv.isDarwin " -lintl" - + optionalString stdenv.isSunOS " -DBSD_COMP"; + NIX_CFLAGS_COMPILE = optional stdenv.isDarwin "-lintl" + ++ optional stdenv.isSunOS "-DBSD_COMP"; - preConfigure = if !stdenv.isSunOS then null else - '' - sed -i -e 's|inotify.h|foobar-inotify.h|g' configure - ''; + preConfigure = optionalString stdenv.isSunOS '' + sed -i -e 's|inotify.h|foobar-inotify.h|g' configure + ''; + + postConfigure = '' + patchShebangs ./gobject/ + ''; LIBELF_CFLAGS = optional stdenv.isFreeBSD "-I${libelf}"; LIBELF_LIBS = optional stdenv.isFreeBSD "-L${libelf} -lelf"; - preBuild = optionalString stdenv.isDarwin - '' - export MACOSX_DEPLOYMENT_TARGET= - ''; + preBuild = optionalString stdenv.isDarwin '' + export MACOSX_DEPLOYMENT_TARGET= + ''; enableParallelBuilding = true; DETERMINISTIC_BUILD = 1; @@ -100,33 +103,36 @@ stdenv.mkDerivation rec { substituteInPlace "$dev/bin/gdbus-codegen" --replace "$out" "$dev" sed -i "$dev/bin/glib-gettextize" -e "s|^gettext_dir=.*|gettext_dir=$dev/share/glib-2.0/gettext|" '' - # This file is *included* in gtk3 and would introduce runtime reference via __FILE__. - + '' - sed '1i#line 1 "${name}/include/glib-2.0/gobject/gobjectnotifyqueue.c"' \ - -i "$dev"/include/glib-2.0/gobject/gobjectnotifyqueue.c - ''; + # This file is *included* in gtk3 and would introduce runtime reference via __FILE__. + + '' + sed '1i#line 1 "${name}/include/glib-2.0/gobject/gobjectnotifyqueue.c"' \ + -i "$dev"/include/glib-2.0/gobject/gobjectnotifyqueue.c + ''; inherit doCheck; - preCheck = optionalString doCheck - '' export LD_LIBRARY_PATH="$NIX_BUILD_TOP/${name}/glib/.libs:$LD_LIBRARY_PATH" - export TZDIR="${tzdata}/share/zoneinfo" - export XDG_CACHE_HOME="$TMP" - export XDG_RUNTIME_HOME="$TMP" - export HOME="$TMP" - export XDG_DATA_DIRS="${desktop_file_utils}/share:${shared_mime_info}/share" - export G_TEST_DBUS_DAEMON="${dbus_daemon.out}/bin/dbus-daemon" - - substituteInPlace gio/tests/desktop-files/home/applications/epiphany-weather-for-toronto-island-9c6a4e022b17686306243dada811d550d25eb1fb.desktop --replace "Exec=/bin/true" "Exec=${coreutils}/bin/true" - # Needs machine-id, comment the test - sed -e '/\/gdbus\/codegen-peer-to-peer/ s/^\/*/\/\//' -i gio/tests/gdbus-peer.c - sed -e '/g_test_add_func/ s/^\/*/\/\//' -i gio/tests/gdbus-unix-addresses.c - # All gschemas fail to pass the test, upstream bug? - sed -e '/g_test_add_data_func/ s/^\/*/\/\//' -i gio/tests/gschema-compile.c - # Cannot reproduce the failing test_associations on hydra - sed -e '/\/appinfo\/associations/d' -i gio/tests/appinfo.c - # Needed because of libtool wrappers - sed -e '/g_subprocess_launcher_set_environ (launcher, envp);/a g_subprocess_launcher_setenv (launcher, "PATH", g_getenv("PATH"), TRUE);' -i gio/tests/gsubprocess.c - ''; + preCheck = optionalString doCheck '' + export LD_LIBRARY_PATH="$NIX_BUILD_TOP/${name}/glib/.libs:$LD_LIBRARY_PATH" + export TZDIR="${tzdata}/share/zoneinfo" + export XDG_CACHE_HOME="$TMP" + export XDG_RUNTIME_HOME="$TMP" + export HOME="$TMP" + export XDG_DATA_DIRS="${desktop_file_utils}/share:${shared_mime_info}/share" + export G_TEST_DBUS_DAEMON="${dbus_daemon.out}/bin/dbus-daemon" + export PATH="$PATH:$(pwd)/gobject" + echo "PATH=$PATH" + + substituteInPlace gio/tests/desktop-files/home/applications/epiphany-weather-for-toronto-island-9c6a4e022b17686306243dada811d550d25eb1fb.desktop \ + --replace "Exec=/bin/true" "Exec=${coreutils}/bin/true" + # Needs machine-id, comment the test + sed -e '/\/gdbus\/codegen-peer-to-peer/ s/^\/*/\/\//' -i gio/tests/gdbus-peer.c + sed -e '/g_test_add_func/ s/^\/*/\/\//' -i gio/tests/gdbus-unix-addresses.c + # All gschemas fail to pass the test, upstream bug? + sed -e '/g_test_add_data_func/ s/^\/*/\/\//' -i gio/tests/gschema-compile.c + # Cannot reproduce the failing test_associations on hydra + sed -e '/\/appinfo\/associations/d' -i gio/tests/appinfo.c + # Needed because of libtool wrappers + sed -e '/g_subprocess_launcher_set_environ (launcher, envp);/a g_subprocess_launcher_setenv (launcher, "PATH", g_getenv("PATH"), TRUE);' -i gio/tests/gsubprocess.c + ''; passthru = { gioModuleDir = "lib/gio/modules"; @@ -136,7 +142,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "C library of programming buildings blocks"; homepage = https://www.gtk.org/; - license = licenses.lgpl2Plus; + license = licenses.lgpl21Plus; maintainers = with maintainers; [ lovek323 raskin ]; platforms = platforms.unix; diff --git a/pkgs/development/libraries/harfbuzz/default.nix b/pkgs/development/libraries/harfbuzz/default.nix index 8885f2a2c432..f5756d1f5702 100644 --- a/pkgs/development/libraries/harfbuzz/default.nix +++ b/pkgs/development/libraries/harfbuzz/default.nix @@ -5,7 +5,7 @@ }: let - version = "1.4.8"; + version = "1.5.1"; inherit (stdenv.lib) optional optionals optionalString; in @@ -14,7 +14,7 @@ stdenv.mkDerivation { src = fetchurl { url = "http://www.freedesktop.org/software/harfbuzz/release/harfbuzz-${version}.tar.bz2"; - sha256 = "ccec4930ff0bb2d0c40aee203075447954b64a8c2695202413cc5e428c907131"; + sha256 = "56838dfdad2729b8866763c82d623354d138a4d99d9ffb710c7d377b5cfc7c51"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/imlib2/default.nix b/pkgs/development/libraries/imlib2/default.nix index 8c66dcec1613..8d26cabc9b54 100644 --- a/pkgs/development/libraries/imlib2/default.nix +++ b/pkgs/development/libraries/imlib2/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { configureFlags = optional stdenv.isDarwin "--enable-amd64=no" ++ optional (!x11Support) "--without-x"; - outputs = [ "out" "bin" "dev" ]; + outputs = [ "bin" "out" "dev" ]; postInstall = '' moveToOutput bin/imlib2-config "$dev" diff --git a/pkgs/development/libraries/java/rhino/default.nix b/pkgs/development/libraries/java/rhino/default.nix index f106bbe6ebca..544f0f4c4e91 100644 --- a/pkgs/development/libraries/java/rhino/default.nix +++ b/pkgs/development/libraries/java/rhino/default.nix @@ -2,7 +2,6 @@ let version = "1.7R2"; - options = "-Dbuild.compiler=gcj"; # FIXME: We assume GCJ here. xbeans = fetchurl { url = "http://archive.apache.org/dist/xmlbeans/binaries/xmlbeans-2.2.0.zip"; @@ -33,7 +32,7 @@ stdenv.mkDerivation { buildInputs = [ unzip ant javac jvm ]; - buildPhase = "ant ${options} jar"; + buildPhase = "ant jar"; doCheck = false; # FIXME: Install javadoc as well. @@ -55,6 +54,6 @@ stdenv.mkDerivation { homepage = http://www.mozilla.org/rhino/; license = with licenses; [ mpl11 /* or */ gpl2Plus ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/libraries/kdb/default.nix b/pkgs/development/libraries/kdb/default.nix new file mode 100644 index 000000000000..399d5914c2de --- /dev/null +++ b/pkgs/development/libraries/kdb/default.nix @@ -0,0 +1,29 @@ +{ + mkDerivation, lib, fetchurl, + extra-cmake-modules, + qtbase, qttranslations, kcoreaddons, python2, sqlite, postgresql, libmysql +}: + +mkDerivation rec { + pname = "kdb"; + version = "3.0.2"; + name = "${pname}-${version}"; + + src = fetchurl { + url = "mirror://kde/stable/${pname}/src/${name}.tar.xz"; + sha256 = "1n11xhqk3sf4a5nzvnrnj7bj21yqqqkm2d1xzfx3q82fkyah8s49"; + }; + + nativeBuildInputs = [ extra-cmake-modules ]; + + buildInputs = [ qttranslations kcoreaddons python2 sqlite postgresql libmysql ]; + + propagatedBuildInputs = [ qtbase ]; + + meta = with lib; { + description = "A database connectivity and creation framework for various database vendors"; + license = licenses.lgpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ zraexy ]; + }; +} diff --git a/pkgs/development/libraries/kerberos/krb5.nix b/pkgs/development/libraries/kerberos/krb5.nix index 6f96ce67e270..1e64a4d66005 100644 --- a/pkgs/development/libraries/kerberos/krb5.nix +++ b/pkgs/development/libraries/kerberos/krb5.nix @@ -12,11 +12,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "${type}krb5-${version}"; majorVersion = "1.15"; - version = "${majorVersion}"; + version = "${majorVersion}.2"; src = fetchurl { url = "${meta.homepage}dist/krb5/${majorVersion}/krb5-${version}.tar.gz"; - sha256 = "0z0jxm6ppbxi9anv2h12nrb5lpwl95f96kw6dx7sn268fhkpad7x"; + sha256 = "0zn8s7anb10hw3nzwjz7vg10fgmmgvwnibn2zrn3nppjxn9f6f8n"; }; configureFlags = [ "--with-tcl=no" "--localstatedir=/var/lib"] diff --git a/pkgs/development/libraries/kproperty/default.nix b/pkgs/development/libraries/kproperty/default.nix new file mode 100644 index 000000000000..52b5d944b413 --- /dev/null +++ b/pkgs/development/libraries/kproperty/default.nix @@ -0,0 +1,29 @@ +{ + mkDerivation, lib, fetchurl, + extra-cmake-modules, + qtbase, kconfig, kcoreaddons, kwidgetsaddons, kguiaddons +}: + +mkDerivation rec { + pname = "kproperty"; + version = "3.0.2"; + name = "${pname}-${version}"; + + src = fetchurl { + url = "mirror://kde/stable/${pname}/src/${name}.tar.xz"; + sha256 = "1hzkvdap7dzpnxlp4rfg5f24fhqjpqm2hlvv88gj4c0scbp73ynm"; + }; + + nativeBuildInputs = [ extra-cmake-modules ]; + + buildInputs = [ kconfig kcoreaddons kwidgetsaddons kguiaddons ]; + + propagatedBuildInputs = [ qtbase ]; + + meta = with lib; { + description = "A property editing framework with editor widget similar to what is known from Qt Designer"; + license = licenses.lgpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ zraexy ]; + }; +} diff --git a/pkgs/development/libraries/kreport/default.nix b/pkgs/development/libraries/kreport/default.nix new file mode 100644 index 000000000000..561e964c9610 --- /dev/null +++ b/pkgs/development/libraries/kreport/default.nix @@ -0,0 +1,27 @@ +{ + mkDerivation, lib, fetchurl, + extra-cmake-modules, + qtbase, qtdeclarative, qtwebkit, kconfig, kcoreaddons, kwidgetsaddons, kguiaddons, kproperty, marble, python2 +}: + +mkDerivation rec { + pname = "kreport"; + version = "3.0.2"; + name = "${pname}-${version}"; + + src = fetchurl { + url = "mirror://kde/stable/${pname}/src/${name}.tar.xz"; + sha256 = "1zd3vhf26cyp8xrq11awm9pmhnk88ppyc0riyr0gxj8y703ahkp0"; + }; + + nativeBuildInputs = [ extra-cmake-modules ]; + + buildInputs = [ qtdeclarative qtwebkit kconfig kcoreaddons kwidgetsaddons kguiaddons kproperty marble python2 ]; + + meta = with lib; { + description = "A framework for creation and generation of reports in multiple formats"; + license = licenses.lgpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ zraexy ]; + }; +} diff --git a/pkgs/development/libraries/leatherman/default.nix b/pkgs/development/libraries/leatherman/default.nix index a9c7a9b70bb4..be033c3860cf 100644 --- a/pkgs/development/libraries/leatherman/default.nix +++ b/pkgs/development/libraries/leatherman/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "leatherman-${version}"; - version = "1.0.0"; + version = "1.3.0"; src = fetchFromGitHub { - sha256 = "15kg6vdr1iav5x3pzwvrdsi54lbl8zh2xwqlp03gaq4n3kg5wj3y"; + sha256 = "1pcbfgq9khlcvxjsqpdshjskwljzawryzps0ickazwm7l3m7hrln"; rev = version; repo = "leatherman"; owner = "puppetlabs"; @@ -13,6 +13,8 @@ stdenv.mkDerivation rec { buildInputs = [ boost cmake curl ruby ]; + enableParallelBuilding = true; + meta = with stdenv.lib; { homepage = https://github.com/puppetlabs/leatherman/; description = "A collection of C++ and CMake utility libraries"; diff --git a/pkgs/development/libraries/libbson/default.nix b/pkgs/development/libraries/libbson/default.nix index 31a1b8b4bf5c..28a6aee67c1e 100644 --- a/pkgs/development/libraries/libbson/default.nix +++ b/pkgs/development/libraries/libbson/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "libbson-${version}"; - version = "1.6.1"; + version = "1.8.0"; src = fetchFromGitHub { owner = "mongodb"; repo = "libbson"; rev = version; - sha256 = "1ilxbv4yjgf0vfzaa8lzn40hv5x1737ny2g2q1wmm8bl39m0viiw"; + sha256 = "1bd9z07q3faq5k4521d9inv0j836w6hrsd0vj2sapjlq8jmqgslg"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/libidn2/default.nix b/pkgs/development/libraries/libidn2/default.nix index e3e4e0007730..521fe00b56d7 100644 --- a/pkgs/development/libraries/libidn2/default.nix +++ b/pkgs/development/libraries/libidn2/default.nix @@ -4,11 +4,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "libidn2-${version}"; - version = "2.0.3"; + version = "2.0.4"; src = fetchurl { url = "mirror://gnu/gnu/libidn/${name}.tar.gz"; - sha256 = "1k88acdf242a6lbznr0h6f02frsqyqw4smw1nznibim5wyf18da3"; + sha256 = "1w6jycr5bbawimhb72wxf9ic92yrhfadahfj0b70myw5n81nnjv4"; }; outputs = [ "bin" "dev" "out" "info" "devdoc" ]; diff --git a/pkgs/development/libraries/libmbim/default.nix b/pkgs/development/libraries/libmbim/default.nix index f1625e6a33fb..92902cd27d79 100644 --- a/pkgs/development/libraries/libmbim/default.nix +++ b/pkgs/development/libraries/libmbim/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pkgconfig, glib, python, udev, libgudev }: stdenv.mkDerivation rec { - name = "libmbim-1.14.0"; + name = "libmbim-1.14.2"; src = fetchurl { url = "https://www.freedesktop.org/software/libmbim/${name}.tar.xz"; - sha256 = "0nxb4x8l092xckk4dy84cn5qhviif8akzy0miypapjqqbalm53fa"; + sha256 = "1krirl9881dnx7l29zhvagk2qlhi26vpvkzdifjklhrjhimzxji2"; }; outputs = [ "out" "dev" "man" ]; diff --git a/pkgs/development/libraries/libmicrohttpd/default.nix b/pkgs/development/libraries/libmicrohttpd/default.nix index 23e6a37f918c..ec03032105fb 100644 --- a/pkgs/development/libraries/libmicrohttpd/default.nix +++ b/pkgs/development/libraries/libmicrohttpd/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, libgcrypt, curl, gnutls, pkgconfig }: +{ stdenv, fetchurl, libgcrypt, curl, gnutls, pkgconfig, libiconv, libintlOrEmpty }: stdenv.mkDerivation rec { name = "libmicrohttpd-0.9.55"; @@ -9,7 +9,8 @@ stdenv.mkDerivation rec { }; outputs = [ "out" "dev" "devdoc" "info" ]; - buildInputs = [ libgcrypt curl gnutls pkgconfig ]; + buildInputs = [ libgcrypt curl gnutls pkgconfig ] + ++ stdenv.lib.optionals stdenv.isDarwin [ libiconv libintlOrEmpty ]; preCheck = '' # Since `localhost' can't be resolved in a chroot, work around it. @@ -32,6 +33,7 @@ stdenv.mkDerivation rec { homepage = http://www.gnu.org/software/libmicrohttpd/; maintainers = with maintainers; [ eelco vrthra fpletz ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } + diff --git a/pkgs/development/libraries/libnfs/default.nix b/pkgs/development/libraries/libnfs/default.nix new file mode 100644 index 000000000000..d9149a1fbac5 --- /dev/null +++ b/pkgs/development/libraries/libnfs/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub, autoreconfHook }: + +stdenv.mkDerivation rec { + name = "libnfs-${version}"; + version = "2.0.0"; + + src = fetchFromGitHub { + owner = "sahlberg"; + repo = "libnfs"; + rev = "libnfs-${version}"; + sha256 = "1xd1xb09jxwmx7hblv0f9gxv7i1glk3nbj2vyq50zpi158lnf2mb"; + }; + + nativeBuildInputs = [ autoreconfHook ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "NFS client library"; + homepage = https://github.com/sahlberg/libnfs; + license = with licenses; [ lgpl2 bsd2 gpl3 ]; + maintainers = with maintainers; [ peterhoeg ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/libraries/liboping/default.nix b/pkgs/development/libraries/liboping/default.nix index 435f593b5974..c177f7ba58ee 100644 --- a/pkgs/development/libraries/liboping/default.nix +++ b/pkgs/development/libraries/liboping/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, ncurses ? null, perl ? null }: stdenv.mkDerivation rec { - name = "liboping-1.9.0"; + name = "liboping-1.10.0"; src = fetchurl { url = "http://verplant.org/liboping/files/${name}.tar.bz2"; - sha256 = "0c1mdx9ixqypayhm617jjv9kr6y60nh3mnryafjzv23bnn41vfs4"; + sha256 = "1n2wkmvw6n80ybdwkjq8ka43z2x8mvxq49byv61b52iyz69slf7b"; }; buildInputs = [ ncurses perl ]; @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { ''; homepage = http://noping.cc/; license = licenses.lgpl21; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = [ maintainers.bjornfor ]; }; } diff --git a/pkgs/development/libraries/libraw/default.nix b/pkgs/development/libraries/libraw/default.nix index 351f839553be..0b88cd02df70 100644 --- a/pkgs/development/libraries/libraw/default.nix +++ b/pkgs/development/libraries/libraw/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "libraw-${version}"; - version = "0.18.2"; + version = "0.18.5"; src = fetchurl { url = "http://www.libraw.org/data/LibRaw-${version}.tar.gz"; - sha256 = "1imby9x88pjx4ad1frdi3bfb8dw90ccyj5pb6w3i6i0iijrnndnf"; + sha256 = "0y519nlvl4bfnnxbwry35f6gbcv6jbbpd2lmiwv6pbyzv4a7saps"; }; outputs = [ "out" "lib" "dev" "doc" ]; diff --git a/pkgs/development/libraries/libressl/default.nix b/pkgs/development/libraries/libressl/default.nix index 4ce1b664725a..4818a720a30c 100644 --- a/pkgs/development/libraries/libressl/default.nix +++ b/pkgs/development/libraries/libressl/default.nix @@ -33,7 +33,7 @@ in { }; libressl_2_6 = generic { - version = "2.6.0"; - sha256 = "0lwapvfda4zj4r0kxn9ys43l5wyfgpljmhq0j1lr45spfis5b3g4"; + version = "2.6.2"; + sha256 = "0y64grb2zx98rjp2lbwihyhbml4z5ih3v7ydbxdvmabj5d4x4adh"; }; } diff --git a/pkgs/development/libraries/librime/default.nix b/pkgs/development/libraries/librime/default.nix new file mode 100644 index 000000000000..a8877bdb2da9 --- /dev/null +++ b/pkgs/development/libraries/librime/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchFromGitHub, cmake, boost, glog, leveldb, marisa, opencc, + libyamlcpp, gmock }: + +stdenv.mkDerivation rec { + name = "librime-${version}"; + version = "1.2.9"; + + src = fetchFromGitHub { + owner = "rime"; + repo = "librime"; + rev = "rime-${version}"; + sha256 = "14jgnfm61ynm086x9v7wfmv2p14h0qp8lq4d2jqm21n821jsraj6"; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ boost glog leveldb marisa opencc libyamlcpp gmock ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = http://rime.im/; + description = "Rime Input Method Engine, the core library"; + license = licenses.bsd3; + maintainers = with maintainers; [ sifmelcara ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/librsvg/default.nix b/pkgs/development/libraries/librsvg/default.nix index 447712fc7db8..7845f28adc91 100644 --- a/pkgs/development/libraries/librsvg/default.nix +++ b/pkgs/development/libraries/librsvg/default.nix @@ -47,6 +47,10 @@ stdenv.mkDerivation rec { -i gdk-pixbuf-loader/Makefile sed -e "s#\$(GDK_PIXBUF_QUERYLOADERS)#GDK_PIXBUF_MODULEDIR=$GDK_PIXBUF/loaders \$(GDK_PIXBUF_QUERYLOADERS)#" \ -i gdk-pixbuf-loader/Makefile + + # Fix thumbnailer path + sed -e "s#@bindir@\(/gdk-pixbuf-thumbnailer\)#${gdk_pixbuf}/bin\1#g" \ + -i gdk-pixbuf-loader/librsvg.thumbnailer.in ''; # Merge gdkpixbuf and librsvg loaders diff --git a/pkgs/development/libraries/libsodium/default.nix b/pkgs/development/libraries/libsodium/default.nix index 4fc1a5d27898..5d4535676e7b 100644 --- a/pkgs/development/libraries/libsodium/default.nix +++ b/pkgs/development/libraries/libsodium/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "libsodium-1.0.13"; + name = "libsodium-1.0.15"; src = fetchurl { url = "https://download.libsodium.org/libsodium/releases/${name}.tar.gz"; - sha256 = "1z93wfg4k5svg8yck6cgdr6ysj91kbpn03nyzwxanncy3b5sq4ww"; + sha256 = "1x3qw7lsz44vcxpcn1dvwig410phg6gmv31jwj94arrgka3rwspv"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/libsoup/default.nix b/pkgs/development/libraries/libsoup/default.nix index d1b476d94d20..229a92d84bf5 100644 --- a/pkgs/development/libraries/libsoup/default.nix +++ b/pkgs/development/libraries/libsoup/default.nix @@ -4,15 +4,15 @@ , libintlOrEmpty , intltool, python }: let - majorVersion = "2.59"; - version = "${majorVersion}.90.1"; + majorVersion = "2.60"; + version = "${majorVersion}.0"; in stdenv.mkDerivation { name = "libsoup-${version}"; src = fetchurl { url = "mirror://gnome/sources/libsoup/${majorVersion}/libsoup-${version}.tar.xz"; - sha256 = "0bh8wa0szkm9bx2anfq655zshwf6jhxvrqwx8jyh8rqgi6z9dhz0"; + sha256 = "b324edbecda0884143c0853b4a2bd5bd37fb3761f12f293c621ff34b9acdc84c"; }; prePatch = '' @@ -38,8 +38,6 @@ stdenv.mkDerivation { NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-lintl"; - postInstall = "rm -rf $out/share/gtk-doc"; - meta = { inherit (glib.meta) maintainers platforms; }; diff --git a/pkgs/development/libraries/libtiff/default.nix b/pkgs/development/libraries/libtiff/default.nix index b64a578f0cce..f43db801f248 100644 --- a/pkgs/development/libraries/libtiff/default.nix +++ b/pkgs/development/libraries/libtiff/default.nix @@ -13,8 +13,8 @@ stdenv.mkDerivation rec { prePatch =let debian = fetchurl { - url = http://snapshot.debian.org/archive/debian-debug/20170602T031313Z/pool/main/t/tiff/tiff_4.0.8-2.debian.tar.xz; - sha256 = "1ssjh6vn9rvl2jwm34i3p89g8lj0c7fj3cziva9rj4vasfps58ng"; + url = http://snapshot.debian.org/archive/debian-debug/20170928T093547Z/pool/main/t/tiff/tiff_4.0.8-5.debian.tar.xz; + sha256 = "11qkiliw04dmdvdd5z2lv5hh2fiwa29qbhkxvlvmb4yslnmyywha"; }; in '' tar xf '${debian}' diff --git a/pkgs/development/libraries/libubox/default.nix b/pkgs/development/libraries/libubox/default.nix new file mode 100644 index 000000000000..71ac22e85a8f --- /dev/null +++ b/pkgs/development/libraries/libubox/default.nix @@ -0,0 +1,24 @@ +{ stdenv, lib, fetchgit, cmake, pkgconfig, json_c }: + +stdenv.mkDerivation { + name = "libubox-2017-09-29"; + + src = fetchgit { + url = "https://git.openwrt.org/project/libubox.git"; + rev = "632688e8d6cde32781e4ec685d59afb0938300ad"; + sha256 = "1rkwn287k7p802hbd9ap13xxrxsghq6827r86ymqbbcmbcrna13c"; + }; + + cmakeFlags = [ "-DBUILD_LUA=OFF" "-DBUILD_EXAMPLES=OFF" ]; + + nativeBuildInputs = [ cmake pkgconfig ]; + buildInputs = [ json_c ]; + + meta = with lib; { + description = "C utility functions for OpenWrt"; + homepage = "https://git.openwrt.org/?p=project/libubox.git;a=summary"; + license = licenses.isc; + platforms = platforms.all; + maintainers = with maintainers; [ fpletz ]; + }; +} diff --git a/pkgs/development/libraries/libwhereami/default.nix b/pkgs/development/libraries/libwhereami/default.nix new file mode 100644 index 000000000000..35e904989c41 --- /dev/null +++ b/pkgs/development/libraries/libwhereami/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchFromGitHub, cmake, boost, curl, leatherman }: + +stdenv.mkDerivation rec { + name = "libwhereami-${version}"; + version = "0.1.1"; + + src = fetchFromGitHub { + sha256 = "0nhbmxm626cgawprszw6c03a3hasxjn1i9ldhhj5xyvxp8r5l9q4"; + rev = version; + repo = "libwhereami"; + owner = "puppetlabs"; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ boost curl leatherman ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + inherit (src.meta) homepage; + description = "Library to report hypervisor information from inside a VM"; + license = licenses.asl20; + maintainers = [ maintainers.womfoo ]; + platforms = platforms.linux; + }; + +} diff --git a/pkgs/development/libraries/libx86/non-x86.patch b/pkgs/development/libraries/libx86/non-x86.patch index 0d41cd737f01..286057c4ba87 100644 --- a/pkgs/development/libraries/libx86/non-x86.patch +++ b/pkgs/development/libraries/libx86/non-x86.patch @@ -5,7 +5,7 @@ diff -Naur libx86-1.1+ds1.orig/Makefile libx86-1.1+ds1/Makefile ifeq ($(BACKEND),x86emu) OBJECTS += thunk.o x86emu/decode.o x86emu/debug.o x86emu/fpu.o \ x86emu/ops.o x86emu/ops2.o x86emu/prim_ops.o x86emu/sys.o -+ CFLAGS += -DX86EMU ++ CFLAGS += -DX86EMU -fno-delete-null-pointer-checks else OBJECTS += lrmi.o endif diff --git a/pkgs/development/libraries/libxdg-basedir/default.nix b/pkgs/development/libraries/libxdg-basedir/default.nix index a8a6200519ee..f0e63efc0d14 100644 --- a/pkgs/development/libraries/libxdg-basedir/default.nix +++ b/pkgs/development/libraries/libxdg-basedir/default.nix @@ -1,16 +1,24 @@ -{stdenv, fetchurl}: +{stdenv, fetchurl, fetchpatch}: stdenv.mkDerivation rec { - name = "libxdg-basedir-1.0.2"; + name = "libxdg-basedir-1.2.0"; src = fetchurl { - url = "http://n.ethz.ch/student/nevillm/download/libxdg-basedir/${name}.tar.gz"; - sha256 = "0fibbzba228gdk05lfi8cgfrsp80a2gnjbwka0pzpkig0fz8pp9i"; + url = "https://nevill.ch/libxdg-basedir/downloads/${name}.tar.gz"; + sha256 = "2757a949618742d80ac59ee2f0d946adc6e71576406cdf798e6ced507708cdf4"; }; - meta = { - homepage = http://n.ethz.ch/student/nevillm/download/libxdg-basedir/; + patches = [ + # Overflow bug + (fetchpatch { + url = "https://github.com/devnev/libxdg-basedir/commit/14e000f696ef8b83264b0ca4407669bdb365fb23.patch"; + sha256 = "0lpy1ijir0x0hhb0fz0w5vxy1wl1cw9kkd6gva0rkp41i6vrp2wq"; + }) + ]; + + meta = with stdenv.lib; { + homepage = https://github.com/devnev/libxdg-basedir; description = "Implementation of the XDG Base Directory specification"; - license = "BSD"; - platforms = stdenv.lib.platforms.unix; + license = licenses.mit; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/marisa/default.nix b/pkgs/development/libraries/marisa/default.nix new file mode 100644 index 000000000000..5f050c6e7a73 --- /dev/null +++ b/pkgs/development/libraries/marisa/default.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl }: + +stdenv.mkDerivation rec { + name = "marisa-${version}"; + version = "0.2.4"; + + src = fetchurl { + url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/marisa-trie/marisa-${version}.tar.gz"; + sha256 = "1cwzf8hr348zihkiy0qckx0n6rxg7sy113xhbslb1irw1pvs99v7"; + }; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = https://code.google.com/p/marisa-trie/; + description = "Static and space-efficient trie data structure library"; + license = licenses.bsd3; + maintainers = with maintainers; [ sifmelcara ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix index c9cb0b36bc50..2d253f7cd45c 100644 --- a/pkgs/development/libraries/mesa/default.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -67,7 +67,7 @@ let in let - version = "17.1.9"; + version = "17.1.10"; branch = head (splitString "." version); driverLink = "/run/opengl-driver" + optionalString stdenv.isi686 "-32"; in @@ -82,7 +82,7 @@ stdenv.mkDerivation { "ftp://ftp.freedesktop.org/pub/mesa/older-versions/${branch}.x/${version}/mesa-${version}.tar.xz" "https://launchpad.net/mesa/trunk/${version}/+download/mesa-${version}.tar.xz" ]; - sha256 = "5f51ad94341696097d5df7b838183534478216858ac0fc8de183671a36ffea1a"; + sha256 = "cbc0d681cc4df47d8deb5a36f45b420978128522fd665b2cd4c7096316f11bdb"; }; prePatch = "patchShebangs ."; diff --git a/pkgs/development/libraries/mongoc/default.nix b/pkgs/development/libraries/mongoc/default.nix index 67d2bdf1559b..4cba89d9206f 100644 --- a/pkgs/development/libraries/mongoc/default.nix +++ b/pkgs/development/libraries/mongoc/default.nix @@ -1,18 +1,19 @@ { stdenv, fetchzip, perl, pkgconfig, libbson -, openssl, which +, openssl, which, zlib, snappy }: stdenv.mkDerivation rec { name = "mongoc-${version}"; - version = "1.7.0"; + version = "1.8.0"; src = fetchzip { url = "https://github.com/mongodb/mongo-c-driver/releases/download/${version}/mongo-c-driver-${version}.tar.gz"; - sha256 = "1s0j7wmgdkgawzd75psh5ml35lkx68h6pimqrnfp2z1ggzcwajgn"; + sha256 = "1vnnk3pwbcmwva1010bl111kdcdx3yb2w7j7a78hhvrm1k9r1wp8"; }; + nativeBuildInputs = [ pkgconfig which perl ]; + buildInputs = [ openssl zlib snappy ]; propagatedBuildInputs = [ libbson ]; - buildInputs = [ openssl perl pkgconfig which ]; meta = with stdenv.lib; { description = "The official C client library for MongoDB"; diff --git a/pkgs/development/libraries/oniguruma/default.nix b/pkgs/development/libraries/oniguruma/default.nix index 62b0080fce0c..b82f137ec6d7 100644 --- a/pkgs/development/libraries/oniguruma/default.nix +++ b/pkgs/development/libraries/oniguruma/default.nix @@ -1,15 +1,25 @@ -{ stdenv, fetchurl }: +{ stdenv, fetchFromGitHub, cmake }: stdenv.mkDerivation rec { - name = "onig-5.9.5"; + name = "onig-${version}"; + version = "6.6.1"; - src = fetchurl { - url = http://www.geocities.jp/kosako3/oniguruma/archive/onig-5.9.5.tar.gz; - sha256 = "12j3fsdb8hbhnj29hysal9l7i7s71l0ln3lx8hjpxx5535wawjcz"; + src = fetchFromGitHub { + owner = "kkos"; + repo = "oniguruma"; + rev = "v${version}"; + sha256 = "062g5443dyxsraq346panfqvbd6wal6nmb336n4dw1rszx576sxz"; }; + nativeBuildInputs = [ cmake ]; + + prePatch = stdenv.lib.optional stdenv.isDarwin '' + substituteInPlace cmake/dist.cmake \ + --replace '@executable_path/''${UP_DIR}/''${INSTALL_LIB}' $out'/''${INSTALL_LIB}' + ''; + meta = { - homepage = http://www.geocities.jp/kosako3/oniguruma/; + homepage = https://github.com/kkos/oniguruma; description = "Regular expressions library"; license = stdenv.lib.licenses.bsd2; maintainers = with stdenv.lib.maintainers; [ fuuzetsu ]; diff --git a/pkgs/development/libraries/opencascade/6.5.nix b/pkgs/development/libraries/opencascade/6.5.nix deleted file mode 100644 index 252a6bb0ad16..000000000000 --- a/pkgs/development/libraries/opencascade/6.5.nix +++ /dev/null @@ -1,47 +0,0 @@ -{stdenv, fetchurl, mesa, tcl, tk, file, libXmu, automake, autoconf, libtool, qt4, -ftgl, freetype}: - -stdenv.mkDerivation rec { - name = "opencascade-6.5.5"; - src = fetchurl { - url = http://files.opencascade.com/OCCT/OCC_6.5.5_release/OpenCASCADE655.tgz; - sha256 = "1dnik00adfh6dxvn9kgf35yjda8chbi05f71i9119idmmrcapipm"; - }; - - buildInputs = [ mesa tcl tk file libXmu automake autoconf libtool qt4 ftgl freetype ]; - - preUnpack = '' - sourceRoot=`pwd`/ros - ''; - - preConfigure = '' - sh ./build_configure - ''; - - # -fpermissive helps building opencascade, although gcc detects a flaw in the code - # and reports an error otherwise. Further versions may fix that. - NIX_CFLAGS_COMPILE = "-fpermissive" - # https://bugzilla.redhat.com/show_bug.cgi?id=902561 - + " -DUSE_INTERP_RESULT" - # https://bugs.freedesktop.org/show_bug.cgi?id=83631 - + " -DGLX_GLXEXT_LEGACY"; - - hardeningDisable = [ "format" ]; - - configureFlags = [ "--with-tcl=${tcl}/lib" "--with-tk=${tk}/lib" "--with-qt=${qt4}" "--with-ftgl=${ftgl}" "--with-freetype=${freetype.dev}" ]; - - postInstall = '' - mv $out/inc $out/include - mkdir -p $out/share/doc/${name} - cp -R ../doc $out/share/doc/${name} - ''; - - enableParallelBuilding = true; - - meta = { - description = "Open CASCADE Technology, libraries for 3D modeling and numerical simulation"; - homepage = http://www.opencascade.org/; - maintainers = with stdenv.lib.maintainers; [viric]; - platforms = with stdenv.lib.platforms; linux; - }; -} diff --git a/pkgs/development/libraries/opencascade/default.nix b/pkgs/development/libraries/opencascade/default.nix index 51581bca382d..58f9019d6e03 100644 --- a/pkgs/development/libraries/opencascade/default.nix +++ b/pkgs/development/libraries/opencascade/default.nix @@ -1,38 +1,21 @@ -{stdenv, fetchurl, mesa, tcl, tk, file, libXmu, cmake, qt4, freetype}: +{stdenv, fetchurl, mesa, tcl, tk, file, libXmu, cmake, libtool, qt4, +ftgl, freetype}: stdenv.mkDerivation rec { - name = "opencascade-6.6.0"; + name = "opencascade-oce-0.17.2"; src = fetchurl { - url = http://files.opencascade.com/OCCT/OCC_6.6.0_release/OpenCASCADE660.tgz; - sha256 = "0q2xn915w9skv9sj74lxnyv9g3b0yi1j04majyzxk6sv4nra97z3"; + url = https://github.com/tpaviot/oce/archive/OCE-0.17.2.tar.gz; + sha256 = "0vpmnb0k5y2f7lpmwx9pg9yfq24zjvnsak5alzacncfm1hv9b6cd"; }; - buildInputs = [ cmake mesa tcl tk file libXmu qt4 freetype ]; - - sourceRoot = "ros/adm/cmake"; - - cmakeFlags = [ - "-D3RDPARTY_TCL_DIR=${tcl}" - "-D3RDPARTY_FREETYPE_DIR=${freetype.dev}" - - # Not used on Linux but must be defined during configuration. - "-D3RDPARTY_FREETYPE_DLL=${freetype.dev}" - ]; - - # https://bugs.freedesktop.org/show_bug.cgi?id=83631 - NIX_CFLAGS_COMPILE = "-DGLX_GLXEXT_LEGACY"; - - hardeningDisable = [ "format" ]; + buildInputs = [ mesa tcl tk file libXmu libtool qt4 ftgl freetype cmake ]; preConfigure = '' - cmakeFlags="$cmakeFlags -DINSTALL_DIR=$out" + cmakeFlags="$cmakeFlags -DOCE_INSTALL_PREFIX=$out" ''; - postInstall = '' - mv $out/inc $out/include - mkdir -p $out/share/doc/${name} - cp -R ../../../doc $out/share/doc/${name} - ''; + # https://bugs.freedesktop.org/show_bug.cgi?id=83631 + NIX_CFLAGS_COMPILE = "-DGLX_GLXEXT_LEGACY"; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/opencascade/oce.nix b/pkgs/development/libraries/opencascade/oce.nix deleted file mode 100644 index 58f9019d6e03..000000000000 --- a/pkgs/development/libraries/opencascade/oce.nix +++ /dev/null @@ -1,28 +0,0 @@ -{stdenv, fetchurl, mesa, tcl, tk, file, libXmu, cmake, libtool, qt4, -ftgl, freetype}: - -stdenv.mkDerivation rec { - name = "opencascade-oce-0.17.2"; - src = fetchurl { - url = https://github.com/tpaviot/oce/archive/OCE-0.17.2.tar.gz; - sha256 = "0vpmnb0k5y2f7lpmwx9pg9yfq24zjvnsak5alzacncfm1hv9b6cd"; - }; - - buildInputs = [ mesa tcl tk file libXmu libtool qt4 ftgl freetype cmake ]; - - preConfigure = '' - cmakeFlags="$cmakeFlags -DOCE_INSTALL_PREFIX=$out" - ''; - - # https://bugs.freedesktop.org/show_bug.cgi?id=83631 - NIX_CFLAGS_COMPILE = "-DGLX_GLXEXT_LEGACY"; - - enableParallelBuilding = true; - - meta = { - description = "Open CASCADE Technology, libraries for 3D modeling and numerical simulation"; - homepage = http://www.opencascade.org/; - maintainers = with stdenv.lib.maintainers; [viric]; - platforms = with stdenv.lib.platforms; linux; - }; -} diff --git a/pkgs/development/libraries/pango/default.nix b/pkgs/development/libraries/pango/default.nix index 88a8ed1df4f3..85032677aae3 100644 --- a/pkgs/development/libraries/pango/default.nix +++ b/pkgs/development/libraries/pango/default.nix @@ -6,25 +6,16 @@ with stdenv.lib; let ver_maj = "1.40"; - ver_min = "11"; + ver_min = "12"; in stdenv.mkDerivation rec { name = "pango-${ver_maj}.${ver_min}"; src = fetchurl { url = "mirror://gnome/sources/pango/${ver_maj}/${name}.tar.xz"; - sha256 = "5b11140590e632739e4151cae06b8116160d59e22bf36a3ccd5df76d1cf0383e"; + sha256 = "75f1a9a8e4e2b28cbc078b50c1fa927ee4ded994d1ade97c5603e2d1f3161cfc"; }; - patches = [ - # https://bugzilla.gnome.org/show_bug.cgi?id=785978#c9 - (fetchpatch rec { - name = "pango-fix-gtk2-test-failures.patch"; - url = "https://bug785978.bugzilla-attachments.gnome.org/attachment.cgi?id=357690&action=diff&collapsed=&context=patch&format=raw&headers=1"; - sha256 = "055m2dllfr5pgw6bci72snw38f4hsyw1x7flj188c965ild8lq3a"; - }) - ]; - outputs = [ "bin" "dev" "out" "devdoc" ]; buildInputs = [ gobjectIntrospection ]; diff --git a/pkgs/development/libraries/protobuf/generic-v3.nix b/pkgs/development/libraries/protobuf/generic-v3.nix index 44ecdcb2f659..b3249aae9b17 100644 --- a/pkgs/development/libraries/protobuf/generic-v3.nix +++ b/pkgs/development/libraries/protobuf/generic-v3.nix @@ -34,6 +34,8 @@ stdenv.mkDerivation rec { doCheck = true; + dontDisableStatic = true; + NIX_CFLAGS_COMPILE = with stdenv.lib; # gcc before 6 doesn't know this option optionalString (hasPrefix "gcc-6" stdenv.cc.cc.name) "-Wno-error=misleading-indentation"; diff --git a/pkgs/development/libraries/qt-5/qtbase-setup-hook.sh b/pkgs/development/libraries/qt-5/qtbase-setup-hook.sh index e080d99a4aa6..e4ef456bf97b 100644 --- a/pkgs/development/libraries/qt-5/qtbase-setup-hook.sh +++ b/pkgs/development/libraries/qt-5/qtbase-setup-hook.sh @@ -116,7 +116,11 @@ fi if [ -z "$NIX_QT5_TMP" ]; then if [ -z "$NIX_QT_SUBMODULE" ]; then - NIX_QT5_TMP=$(pwd)/__nix_qt5__ + if [ -z "$IN_NIX_SHELL" ]; then + NIX_QT5_TMP=$(pwd)/__nix_qt5__ + else + NIX_QT5_TMP=$(mktemp -d) + fi else NIX_QT5_TMP=$out fi @@ -142,3 +146,10 @@ EOF export QMAKE="$NIX_QT5_TMP/bin/qmake" fi +_qtShellCleanupHook () { + rm -fr $NIX_QT5_TMP +} + +if [ -n "$IN_NIX_SHELL" ]; then + trap _qtShellCleanupHook EXIT +fi diff --git a/pkgs/development/libraries/qxt/default.nix b/pkgs/development/libraries/qxt/default.nix index 78dbe1366729..5ed05ec6b322 100644 --- a/pkgs/development/libraries/qxt/default.nix +++ b/pkgs/development/libraries/qxt/default.nix @@ -29,5 +29,6 @@ stdenv.mkDerivation rec { license = stdenv.lib.licenses.gpl2; platforms = stdenv.lib.platforms.linux; maintainers = with stdenv.lib.maintainers; [ forkk ]; + broken = true; }; } diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index 5a08e32e7e98..b3c6d9f26d47 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -1,22 +1,32 @@ -{ stdenv, fetchurl, zlib, bzip2, lzma, curl }: +{ stdenv, fetchurl, zlib, bzip2, lzma, curl, perl }: stdenv.mkDerivation rec { name = "${pname}-${version}"; - version = "${major}.0"; pname = "htslib"; - major = "1.5"; + version = "1.6"; src = fetchurl { - url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2"; - sha256 = "0bcjmnbwp2bib1z1bkrp95w9v2syzdwdfqww10mkb1hxlmg52ax0"; + url = "https://github.com/samtools/htslib/releases/download/${version}/${name}.tar.bz2"; + sha256 = "1jsca3hg4rbr6iqq6imkj4lsvgl8g9768bcmny3hlff2w25vx24m"; }; + # perl is only used during the check phase. + nativeBuildInputs = [ perl ]; + buildInputs = [ zlib bzip2 lzma curl ]; configureFlags = "--enable-libcurl"; # optional but strongly recommended installFlags = "prefix=$(out)"; + preCheck = '' + patchShebangs test/ + ''; + + enableParallelBuilding = true; + + doCheck = true; + meta = with stdenv.lib; { description = "A C library for reading/writing high-throughput sequencing data"; license = licenses.mit; @@ -25,4 +35,3 @@ stdenv.mkDerivation rec { maintainers = [ maintainers.mimadrid ]; }; } - diff --git a/pkgs/development/libraries/sfml/default.nix b/pkgs/development/libraries/sfml/default.nix index 05ecbfff9062..d34280c16246 100644 --- a/pkgs/development/libraries/sfml/default.nix +++ b/pkgs/development/libraries/sfml/default.nix @@ -3,14 +3,14 @@ }: let - version = "2.4.1"; + version = "2.4.2"; in stdenv.mkDerivation rec { name = "sfml-${version}"; src = fetchurl { - url = "https://github.com/LaurentGomila/SFML/archive/${version}.tar.gz"; - sha256 = "13irazmqk9vcgkigsjcxns7xjmnz1gifw0b656z1rpz208diklgr"; + url = "https://github.com/SFML/SFML/archive/${version}.tar.gz"; + sha256 = "cf268fb487e4048c85e5b2f53d62596854762c98cba1c1b61ccd91f78253ef4b"; }; buildInputs = [ cmake libX11 freetype libjpeg openal flac libvorbis glew libXrandr libXrender udev xcbutilimage diff --git a/pkgs/development/libraries/simgear/default.nix b/pkgs/development/libraries/simgear/default.nix index b5c946781464..d724ebbf3738 100644 --- a/pkgs/development/libraries/simgear/default.nix +++ b/pkgs/development/libraries/simgear/default.nix @@ -6,18 +6,20 @@ stdenv.mkDerivation rec { name = "simgear-${version}"; - version = "2016.4.4"; - shortVersion = "2016.4"; + version = "2017.3.1"; + shortVersion = "2017.3"; src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/${name}.tar.bz2"; - sha256 = "1p615wmh744m01mcqik27ah1wjdf3sj7vard1vfdpz5v0q0gs52m"; + sha256 = "1x71wvycs2bjgmmacswgk6091p65p46fr40mr7f4kcipnx88bq0f"; }; buildInputs = [ plib freeglut xproto libX11 libXext xextproto libXi inputproto libICE libSM libXt libXmu mesa boost zlib libjpeg freealut openscenegraph openal expat cmake apr curl ]; + enableParallelBuilding = true; + meta = with stdenv.lib; { description = "Simulation construction toolkit"; homepage = https://gitorious.org/fg/simgear; diff --git a/pkgs/development/libraries/twolame/default.nix b/pkgs/development/libraries/twolame/default.nix new file mode 100644 index 000000000000..54ba8470fc5b --- /dev/null +++ b/pkgs/development/libraries/twolame/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchFromGitHub +, autoreconfHook, pkgconfig +, libsndfile }: + +stdenv.mkDerivation rec { + + name = "twolame-${version}"; + version = "2017-09-27"; + + src = fetchFromGitHub { + owner = "njh"; + repo = "twolame"; + rev = "977c8ac55d8ca6d5f35d1d413a119dac2b3b0333"; + sha256 = "1rq3yc8ygzdqid9zk6pixmm4w9sk2vrlx217lhn5bjaglv7iyf7x"; + }; + + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ libsndfile ]; + + meta = with stdenv.lib;{ + description = "A MP2 encoder"; + longDescription = '' + TwoLAME is an optimised MPEG Audio Layer 2 (MP2) encoder based on + tooLAME by Mike Cheng, which in turn is based upon the ISO dist10 + code and portions of LAME. + ''; + homepage = http://www.twolame.org/; + license = with licenses; [ lgpl2Plus ]; + platforms = with platforms; [ unix ]; + maintainers = with maintainers; [ AndersonTorres ]; + }; +} diff --git a/pkgs/development/libraries/wlc/default.nix b/pkgs/development/libraries/wlc/default.nix index 832600fed874..c67070094de6 100644 --- a/pkgs/development/libraries/wlc/default.nix +++ b/pkgs/development/libraries/wlc/default.nix @@ -1,36 +1,38 @@ -{ lib, stdenv, fetchgit, cmake, pkgconfig -, glibc, wayland, pixman, libxkbcommon, libinput, libxcb, xcbutilwm, xcbutilimage, mesa, libdrm, udev, systemd, dbus_libs -, libpthreadstubs, libX11, libXau, libXdmcp, libXext, libXdamage, libxshmfence, libXxf86vm -, wayland-protocols +{ stdenv, fetchFromGitHub, cmake, pkgconfig +, wayland, pixman, libxkbcommon, libinput, libxcb, xcbutilwm, xcbutilimage, mesa +, libdrm, udev, libX11, libXdamage, systemd, dbus_libs, wayland-protocols +, libpthreadstubs, libXau, libXdmcp, libXext, libXxf86vm +, withOptionalPackages ? true, zlib, valgrind, doxygen }: stdenv.mkDerivation rec { name = "wlc-${version}"; - version = "0.0.9"; + version = "0.0.9"; # 0.0.10 currently causes segfaults - src = fetchgit { - url = "https://github.com/Cloudef/wlc"; - rev = "refs/tags/v${version}"; - sha256 = "1r6jf64gs7n9a8129wsc0mdwhcv44p8k87kg0714rhx3g2w22asg"; + src = fetchFromGitHub { + owner = "Cloudef"; + repo = "wlc"; + rev = "v${version}"; fetchSubmodules = true; - }; + sha256 = "1r6jf64gs7n9a8129wsc0mdwhcv44p8k87kg0714rhx3g2w22asg"; + }; nativeBuildInputs = [ cmake pkgconfig ]; buildInputs = [ - wayland pixman libxkbcommon libinput libxcb xcbutilwm xcbutilimage mesa libdrm udev - libX11 libXdamage systemd dbus_libs wayland-protocols - ]; - + wayland pixman libxkbcommon libinput libxcb xcbutilwm xcbutilimage mesa + libdrm udev libX11 libXdamage systemd dbus_libs wayland-protocols + libpthreadstubs libXau libXdmcp libXext libXxf86vm ] + ++ stdenv.lib.optionals withOptionalPackages [ zlib valgrind doxygen ]; doCheck = true; checkTarget = "test"; - meta = { + meta = with stdenv.lib; { description = "A library for making a simple Wayland compositor"; homepage = https://github.com/Cloudef/wlc; - license = lib.licenses.mit; - platforms = lib.platforms.linux; - maintainers = with lib.maintainers; [ ]; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ primeos ]; # Trying to keep it up-to-date. }; } diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-protobufs.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-protobufs.nix new file mode 100644 index 000000000000..7ec440076c35 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-protobufs.nix @@ -0,0 +1,30 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-protobufs''; + version = ''20170403-git''; + + description = ''Protobufs for Common Lisp''; + + deps = [ args."alexandria" args."babel" args."closer-mop" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-protobufs/2017-04-03/cl-protobufs-20170403-git.tgz''; + sha256 = ''0ibpl076k8gq79sacg96mzjf5hqkrxzi5wlx3bjap52pla53w4g5''; + }; + + packageName = "cl-protobufs"; + + asdFilesToKeep = ["cl-protobufs.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-protobufs DESCRIPTION Protobufs for Common Lisp SHA256 + 0ibpl076k8gq79sacg96mzjf5hqkrxzi5wlx3bjap52pla53w4g5 URL + http://beta.quicklisp.org/archive/cl-protobufs/2017-04-03/cl-protobufs-20170403-git.tgz + MD5 86c8da92b246b4b77d6107bc5dfaff08 NAME cl-protobufs FILENAME + cl-protobufs DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME closer-mop FILENAME closer-mop) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES (alexandria babel closer-mop trivial-features trivial-garbage) + VERSION 20170403-git SIBLINGS (cl-protobufs-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt b/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt index 32ef6367e27a..49aa941094bd 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt @@ -33,6 +33,7 @@ closer-mop cl-ppcre cl-ppcre-template cl-ppcre-unicode +cl-protobufs cl-reexport cl-smtp clsql diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix.nix b/pkgs/development/lisp-modules/quicklisp-to-nix.nix index 22b58895747d..86817e14f553 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix.nix @@ -2012,6 +2012,19 @@ let quicklisp-to-nix-packages = rec { })); + "cl-protobufs" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-protobufs" or (x: {})) + (import ./quicklisp-to-nix-output/cl-protobufs.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; + })); + + "cl-ppcre-unicode" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-ppcre-unicode" or (x: {})) diff --git a/pkgs/development/node-packages/node-packages-v6.nix b/pkgs/development/node-packages/node-packages-v6.nix index ba2a6c77ce2f..bd4a3e5abcc6 100644 --- a/pkgs/development/node-packages/node-packages-v6.nix +++ b/pkgs/development/node-packages/node-packages-v6.nix @@ -23701,10 +23701,10 @@ in bower2nix = nodeEnv.buildNodePackage { name = "bower2nix"; packageName = "bower2nix"; - version = "3.1.1"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/bower2nix/-/bower2nix-3.1.1.tgz"; - sha1 = "77cc8f966a3595686f5d6fae30ad9bd2cc20bfe3"; + url = "https://registry.npmjs.org/bower2nix/-/bower2nix-3.2.0.tgz"; + sha1 = "nlzr17lidjf72s60vcsnqpjxgnnsn32s"; }; dependencies = [ sources."argparse-1.0.4" @@ -37338,4 +37338,4 @@ in }; production = true; }; -} \ No newline at end of file +} diff --git a/pkgs/development/ocaml-modules/curses/default.nix b/pkgs/development/ocaml-modules/curses/default.nix index 4fd75e7aac53..834b810183ba 100644 --- a/pkgs/development/ocaml-modules/curses/default.nix +++ b/pkgs/development/ocaml-modules/curses/default.nix @@ -27,5 +27,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2; maintainers = [ maintainers.volth ]; platforms = ocaml.meta.platforms or []; + broken = true; }; } diff --git a/pkgs/development/ocaml-modules/eliom/default.nix b/pkgs/development/ocaml-modules/eliom/default.nix index 63e256b60958..42afec7e439d 100644 --- a/pkgs/development/ocaml-modules/eliom/default.nix +++ b/pkgs/development/ocaml-modules/eliom/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, which, ocsigen_server, ocsigen_deriving, ocaml, - js_of_ocaml, ocaml_react, lwt, calendar, cryptokit, tyxml, - ipaddr, ocamlnet, ocaml_ssl, ocaml_pcre, ocaml_optcomp, + js_of_ocaml, react, lwt, calendar, cryptokit, tyxml, + ipaddr, ocamlnet, ssl, ocaml_pcre, ocaml_optcomp, reactivedata, opam, ppx_tools, ppx_deriving, findlib , ocamlbuild }: @@ -24,7 +24,7 @@ stdenv.mkDerivation rec propagatedBuildInputs = [ lwt reactivedata tyxml ipaddr ocsigen_server ppx_deriving ocsigen_deriving js_of_ocaml - calendar cryptokit ocamlnet ocaml_react ocaml_ssl ocaml_pcre ]; + calendar cryptokit ocamlnet react ssl ocaml_pcre ]; installPhase = "opam-installer -i --prefix=$out --libdir=$OCAMLFIND_DESTDIR"; diff --git a/pkgs/development/ocaml-modules/lambda-term/1.6.nix b/pkgs/development/ocaml-modules/lambda-term/1.6.nix index f8e79d566d44..c0532ff03259 100644 --- a/pkgs/development/ocaml-modules/lambda-term/1.6.nix +++ b/pkgs/development/ocaml-modules/lambda-term/1.6.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, libev, ocaml, findlib, ocamlbuild, lwt, ocaml_react, zed, camlp4 }: +{ stdenv, fetchurl, libev, ocaml, findlib, ocamlbuild, lwt, react, zed, camlp4 }: stdenv.mkDerivation rec { version = "1.6"; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "1rhfixdgpylxznf6sa9wr31wb4pjzpfn5mxhxqpbchmpl2afwa09"; }; - buildInputs = [ libev ocaml findlib ocamlbuild lwt ocaml_react ]; + buildInputs = [ libev ocaml findlib ocamlbuild lwt react ]; propagatedBuildInputs = [ camlp4 zed ]; diff --git a/pkgs/development/ocaml-modules/lwt/default.nix b/pkgs/development/ocaml-modules/lwt/default.nix index fc721dc4c9a3..4d751dac476a 100644 --- a/pkgs/development/ocaml-modules/lwt/default.nix +++ b/pkgs/development/ocaml-modules/lwt/default.nix @@ -1,5 +1,5 @@ { stdenv, buildOcaml, fetchzip, which, cryptopp, ocaml, findlib, ocamlbuild, camlp4 -, ocaml_react, ocaml_ssl, libev, pkgconfig, ncurses, ocaml_oasis, glib +, react, ssl, libev, pkgconfig, ncurses, ocaml_oasis, glib , ppx_tools, result, cppo , ppxSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02" , version ? if stdenv.lib.versionAtLeast ocaml.version "4.02" then "2.7.1" else "2.6.0" @@ -30,7 +30,7 @@ buildOcaml rec { ++ stdenv.lib.optional ppxSupport ppx_tools; propagatedBuildInputs = [ result ] - ++ optionals [ ocaml_react ocaml_ssl ] + ++ optionals [ react ssl ] ++ [ libev ]; configureScript = "ocaml setup.ml -configure"; diff --git a/pkgs/development/ocaml-modules/lwt_react/default.nix b/pkgs/development/ocaml-modules/lwt_react/default.nix index 022a60dcc66f..4d505b23ae0e 100644 --- a/pkgs/development/ocaml-modules/lwt_react/default.nix +++ b/pkgs/development/ocaml-modules/lwt_react/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, lwt, ocaml_react }: +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, lwt, react }: stdenv.mkDerivation rec { version = "1.0.1"; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { buildInputs = [ ocaml findlib ocamlbuild ]; - propagatedBuildInputs = [ lwt ocaml_react ]; + propagatedBuildInputs = [ lwt react ]; createFindlibDestdir = true; diff --git a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix index 3610cded1c94..108a2c30f2dd 100644 --- a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix +++ b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix @@ -6,13 +6,13 @@ else stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-ocaml-migrate-parsetree-${version}"; - version = "1.0.4"; + version = "1.0.5"; src = fetchFromGitHub { owner = "let-def"; repo = "ocaml-migrate-parsetree"; rev = "v${version}"; - sha256 = "0xwjll827anqngnqy746m2pd44mkhsaaqaqbir6z91xcqix2isvy"; + sha256 = "1wj66nb16zijacpfrcm7yi0hlg315v71nxri3ia7r0sa3mlzxl34"; }; buildInputs = [ ocaml findlib ocamlbuild jbuilder ]; diff --git a/pkgs/development/ocaml-modules/ocsigen-server/default.nix b/pkgs/development/ocaml-modules/ocsigen-server/default.nix index c8e60015d013..081f9edbecf9 100644 --- a/pkgs/development/ocaml-modules/ocsigen-server/default.nix +++ b/pkgs/development/ocaml-modules/ocsigen-server/default.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl, ocaml, findlib, which, ocaml_react, ocaml_ssl, +{ stdenv, fetchurl, ocaml, findlib, which, react, ssl, lwt, ocamlnet, ocaml_pcre, cryptokit, tyxml, ipaddr, zlib, libev, openssl, ocaml_sqlite3, tree, uutf, makeWrapper, camlp4 , camlzip, pgocaml @@ -17,7 +17,7 @@ stdenv.mkDerivation { sha256 = "1v44qv2ixd7i1qinyhlzzqiffawsdl7xhhh6ysd7lf93kh46d5sy"; }; - buildInputs = [ocaml which findlib ocaml_react ocaml_ssl lwt + buildInputs = [ocaml which findlib react ssl lwt ocamlnet ocaml_pcre cryptokit tyxml ipaddr zlib libev openssl ocaml_sqlite3 tree uutf makeWrapper camlp4 pgocaml camlzip ]; @@ -31,7 +31,7 @@ stdenv.mkDerivation { '' rm -rf $out/var/run wrapProgram $out/bin/ocsigenserver \ - --prefix CAML_LD_LIBRARY_PATH : "${mkpath ocaml_ssl "ssl"}:${mkpath lwt "lwt"}:${mkpath ocamlnet "netsys"}:${mkpath ocamlnet "netstring"}:${mkpath ocaml_pcre "pcre"}:${mkpath cryptokit "cryptokit"}:${mkpath ocaml_sqlite3 "sqlite3"}" + --prefix CAML_LD_LIBRARY_PATH : "${mkpath ssl "ssl"}:${mkpath lwt "lwt"}:${mkpath ocamlnet "netsys"}:${mkpath ocamlnet "netstring"}:${mkpath ocaml_pcre "pcre"}:${mkpath cryptokit "cryptokit"}:${mkpath ocaml_sqlite3 "sqlite3"}" ''; dontPatchShebangs = true; diff --git a/pkgs/development/ocaml-modules/ojquery/default.nix b/pkgs/development/ocaml-modules/ojquery/default.nix index 6e9ca15fb382..2d697a285fd3 100644 --- a/pkgs/development/ocaml-modules/ojquery/default.nix +++ b/pkgs/development/ocaml-modules/ojquery/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchgit, ocaml, findlib, ocamlbuild, js_of_ocaml, js_of_ocaml-camlp4, camlp4, lwt3, ocaml_react }: +{ stdenv, fetchgit, ocaml, findlib, ocamlbuild, js_of_ocaml, js_of_ocaml-camlp4, camlp4, lwt3, react }: stdenv.mkDerivation rec { version = "0.1"; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { }; buildInputs = [ ocaml findlib ocamlbuild js_of_ocaml-camlp4 camlp4 ]; - propagatedBuildInputs = [ js_of_ocaml lwt3 ocaml_react ]; + propagatedBuildInputs = [ js_of_ocaml lwt3 react ]; createFindlibDestdir = true; diff --git a/pkgs/development/ocaml-modules/pprint/default.nix b/pkgs/development/ocaml-modules/pprint/default.nix index 83732eb1f75f..899806c4dae2 100644 --- a/pkgs/development/ocaml-modules/pprint/default.nix +++ b/pkgs/development/ocaml-modules/pprint/default.nix @@ -2,13 +2,23 @@ assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "3.12"; +let param = + if stdenv.lib.versionAtLeast ocaml.version "4.02" + then { + version = "20171003"; + sha256 = "06zwsskri8kaqjdszj9360nf36zvwh886xwf033aija8c9k4w6cx"; + } else { + version = "20140424"; + sha256 = "0sc9q89dnyarcg24czyhr6ams0ylqvia3745s6rfwd2nldpygsdk"; +}; in + stdenv.mkDerivation { - name = "ocaml-pprint-20140424"; + name = "ocaml${ocaml.version}-pprint-${param.version}"; src = fetchurl { - url = http://gallium.inria.fr/~fpottier/pprint/pprint-20140424.tar.gz; - sha256 = "0sc9q89dnyarcg24czyhr6ams0ylqvia3745s6rfwd2nldpygsdk"; + url = "http://gallium.inria.fr/~fpottier/pprint/pprint-${param.version}.tar.gz"; + inherit (param) sha256; }; buildInputs = [ ocaml findlib ocamlbuild ]; diff --git a/pkgs/development/ocaml-modules/react/default.nix b/pkgs/development/ocaml-modules/react/default.nix index 2dffbcf440f9..5a720aead806 100644 --- a/pkgs/development/ocaml-modules/react/default.nix +++ b/pkgs/development/ocaml-modules/react/default.nix @@ -1,29 +1,19 @@ -{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opam }: +{ stdenv, fetchurl, ocaml, findlib, topkg, ocamlbuild, opam }: stdenv.mkDerivation { - name = "ocaml-react-1.2.0"; + name = "ocaml-react-1.2.1"; src = fetchurl { - url = http://erratique.ch/software/react/releases/react-1.2.0.tbz; - sha256 = "0knhgbngphv5sp1yskfd97crf169qhpc0igr6w7vqw0q36lswyl8"; + url = http://erratique.ch/software/react/releases/react-1.2.1.tbz; + sha256 = "1aj8w79gdd9xnrbz7s5p8glcb4pmimi8jp9f439dqnf6ih3mqb3v"; }; unpackCmd = "tar xjf $src"; - buildInputs = [ ocaml findlib ocamlbuild opam ]; + buildInputs = [ ocaml findlib topkg ocamlbuild opam ]; createFindlibDestdir = true; - configurePhase = "ocaml pkg/git.ml"; - buildPhase = "ocaml pkg/build.ml native=true native-dynlink=true"; - - installPhase = - let ocamlVersion = (builtins.parseDrvName (ocaml.name)).version; - in - '' - opam-installer --script --prefix=$out react.install > install.sh - sed -i s!lib/react!lib/ocaml/${ocamlVersion}/site-lib/react! install.sh - sh install.sh - ''; + inherit (topkg) buildPhase installPhase; meta = with stdenv.lib; { homepage = http://erratique.ch/software/react; diff --git a/pkgs/development/ocaml-modules/reactivedata/default.nix b/pkgs/development/ocaml-modules/reactivedata/default.nix index 828a3fb60683..1f1781f5a65b 100644 --- a/pkgs/development/ocaml-modules/reactivedata/default.nix +++ b/pkgs/development/ocaml-modules/reactivedata/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, ocaml_react, opam }: +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, react, opam }: assert stdenv.lib.versionAtLeast ocaml.version "3.11"; @@ -10,7 +10,7 @@ stdenv.mkDerivation { }; buildInputs = [ ocaml findlib ocamlbuild opam ]; - propagatedBuildInputs = [ocaml_react]; + propagatedBuildInputs = [ react ]; buildPhase = "ocaml pkg/build.ml native=true native-dynlink=true"; diff --git a/pkgs/development/ocaml-modules/ssl/default.nix b/pkgs/development/ocaml-modules/ssl/default.nix index 81b8c28b4524..3886af37512f 100644 --- a/pkgs/development/ocaml-modules/ssl/default.nix +++ b/pkgs/development/ocaml-modules/ssl/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-ssl-${version}"; - version = "0.5.3"; + version = "0.5.4"; src = fetchzip { - url = "https://github.com/savonet/ocaml-ssl/releases/download/0.5.3/ocaml-ssl-${version}.tar.gz"; - sha256 = "0h2k19zpdvq1gqwrmmgkibw4j48l71vv6ajzxs0wi71y80c1vhwm"; + url = "https://github.com/savonet/ocaml-ssl/releases/download/${version}/ocaml-ssl-${version}.tar.gz"; + sha256 = "01sy3f94b463ff7dmkfsv67jh8g8h20wh7npjwqilniif7lgf4l3"; }; buildInputs = [which ocaml findlib]; diff --git a/pkgs/development/ocaml-modules/stdint/default.nix b/pkgs/development/ocaml-modules/stdint/default.nix new file mode 100644 index 000000000000..42771d1e35f1 --- /dev/null +++ b/pkgs/development/ocaml-modules/stdint/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild }: + +stdenv.mkDerivation rec { + name = "ocaml${ocaml.version}-stdint-${version}"; + version = "0.3.0"; + src = fetchFromGitHub { + owner = "andrenth"; + repo = "ocaml-stdint"; + rev = version; + sha256 = "18nh23yx4ghgq7mjf4mdyq8kj1fdw5d0abw919s8n4mv21cmpwia"; + }; + + buildInputs = [ ocaml findlib ocamlbuild ]; + configurePhase = "ocaml setup.ml -configure --prefix $out"; + + createFindlibDestdir = true; + + meta = { + description = "Various signed and unsigned integers for OCaml"; + license = stdenv.lib.licenses.mit; + maintainers = [ stdenv.lib.maintainers.gebner ]; + inherit (src.meta) homepage; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/zed/default.nix b/pkgs/development/ocaml-modules/zed/default.nix index 410d5c0c612b..72ff8e4c0497 100644 --- a/pkgs/development/ocaml-modules/zed/default.nix +++ b/pkgs/development/ocaml-modules/zed/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, camomile, ocaml_react }: +{ stdenv, fetchzip, ocaml, findlib, ocamlbuild, camomile, react }: stdenv.mkDerivation rec { version = "1.4"; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "0d8qfy0qiydrrqi8qc9rcwgjigql6vx9gl4zp62jfz1lmjgb2a3w"; }; - buildInputs = [ ocaml findlib ocamlbuild ocaml_react ]; + buildInputs = [ ocaml findlib ocamlbuild react ]; propagatedBuildInputs = [ camomile ]; diff --git a/pkgs/development/pure-modules/gen/default.nix b/pkgs/development/pure-modules/gen/default.nix index 082a8c88c61e..9bb65d042b96 100644 --- a/pkgs/development/pure-modules/gen/default.nix +++ b/pkgs/development/pure-modules/gen/default.nix @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { homepage = http://puredocs.bitbucket.org/pure-gen.html; license = stdenv.lib.licenses.free; platforms = stdenv.lib.platforms.linux; + hydraPlatforms = []; maintainers = with stdenv.lib.maintainers; [ asppsa ]; }; } diff --git a/pkgs/development/python-modules/asgi_redis/default.nix b/pkgs/development/python-modules/asgi_redis/default.nix index 440f15cbd3a1..77a9af8645e7 100644 --- a/pkgs/development/python-modules/asgi_redis/default.nix +++ b/pkgs/development/python-modules/asgi_redis/default.nix @@ -1,14 +1,14 @@ -{ stdenv, buildPythonPackage, fetchurl, +{ stdenv, buildPythonPackage, fetchPypi, asgiref, asgi_ipc, msgpack, six, redis, cryptography }: buildPythonPackage rec { - version = "1.4.2"; + version = "1.4.3"; pname = "asgi_redis"; name = "${pname}-${version}"; - src = fetchurl { - url = "mirror://pypi/a/asgi_redis/${name}.tar.gz"; - sha256 = "aa8e9342a3e66c4e7f9035b074f6f66b92e5f1cf8022f1446106ed6dd004a274"; + src = fetchPypi { + inherit pname version; + sha256 = "10xk7k7mcd28nb3v93mc8xa7sa6p02jnbl8idk6scr6p75jaixzi"; }; # Requires a redis server available diff --git a/pkgs/development/python-modules/cffi/default.nix b/pkgs/development/python-modules/cffi/default.nix index 5b0265601a3e..cced78c0c6a5 100644 --- a/pkgs/development/python-modules/cffi/default.nix +++ b/pkgs/development/python-modules/cffi/default.nix @@ -10,6 +10,8 @@ if isPyPy then null else buildPythonPackage rec { sha256 = "1mffyilq4qycm8gs4wkgb18rnqil8a9blqq77chdlshzxc8jkc5k"; }; + outputs = [ "out" "dev" ]; + propagatedBuildInputs = [ libffi pycparser ]; buildInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/cgroup-utils/default.nix b/pkgs/development/python-modules/cgroup-utils/default.nix index ed0623fa778b..e565e23458ca 100644 --- a/pkgs/development/python-modules/cgroup-utils/default.nix +++ b/pkgs/development/python-modules/cgroup-utils/default.nix @@ -22,6 +22,7 @@ buildPythonPackage rec { meta = with stdenv.lib; { description = "Utility tools for control groups of Linux"; maintainers = with maintainers; [ layus ]; + platforms = platforms.linux; license = licenses.gpl2; }; } diff --git a/pkgs/development/python-modules/channels/default.nix b/pkgs/development/python-modules/channels/default.nix index 4dfe83f6758b..e5c92ffcde26 100644 --- a/pkgs/development/python-modules/channels/default.nix +++ b/pkgs/development/python-modules/channels/default.nix @@ -1,14 +1,14 @@ -{ stdenv, buildPythonPackage, fetchurl, +{ stdenv, buildPythonPackage, fetchPypi, asgiref, django, daphne }: buildPythonPackage rec { pname = "channels"; name = "${pname}-${version}"; - version = "1.1.6"; + version = "1.1.8"; - src = fetchurl { - url = "mirror://pypi/c/channels/${name}.tar.gz"; - sha256 = "44ab9a1f610ecc9ac25d5f90e7a44f49b18de28a05a26fe34e935af257f1eefe"; + src = fetchPypi { + inherit pname version; + sha256 = "0gsy3hwn1vd709jkw8ay44qrm6aw7qggr312z8xwzq0x4ihjda02"; }; # Files are missing in the distribution diff --git a/pkgs/development/python-modules/devpi-common/default.nix b/pkgs/development/python-modules/devpi-common/default.nix new file mode 100644 index 000000000000..971d53e3dddd --- /dev/null +++ b/pkgs/development/python-modules/devpi-common/default.nix @@ -0,0 +1,26 @@ +{ stdenv, pythonPackages }: + +with pythonPackages;buildPythonPackage rec { + pname = "devpi-common"; + version = "3.2.0rc1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1ws35g1r0j2xccsna4r6fc9a08przfi28kf9hciq3rmd6ndbr9c9"; + }; + + propagatedBuildInputs = [ requests py ]; + checkInputs = [ pytest ]; + + checkPhase = '' + py.test + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/devpi/devpi; + description = "Utilities jointly used by devpi-server and devpi-client"; + license = licenses.mit; + maintainers = with maintainers; [ lewo makefu ]; + }; +} diff --git a/pkgs/development/python-modules/django_redis/default.nix b/pkgs/development/python-modules/django_redis/default.nix new file mode 100644 index 000000000000..42f2cde81130 --- /dev/null +++ b/pkgs/development/python-modules/django_redis/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchPypi, buildPythonPackage, + mock, django, redis, msgpack }: +buildPythonPackage rec { + pname = "django-redis"; + version = "4.5.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "170dbk1wmdg0mxp5m3376zz54dyxmhmhnswrccf0jnny1wqcgpsp"; + }; + + doCheck = false; + + buildInputs = [ mock ]; + + propagatedBuildInputs = [ + django + redis + msgpack + ]; + + meta = with stdenv.lib; { + description = "Full featured redis cache backend for Django"; + homepage = https://github.com/niwibe/django-redis; + license = licenses.bsd3; + }; +} diff --git a/pkgs/development/python-modules/flake8-future-import/default.nix b/pkgs/development/python-modules/flake8-future-import/default.nix index f00c1fe21661..2ece8ba85abc 100644 --- a/pkgs/development/python-modules/flake8-future-import/default.nix +++ b/pkgs/development/python-modules/flake8-future-import/default.nix @@ -1,4 +1,5 @@ -{ lib, fetchFromGitHub, buildPythonPackage, python, flake8, six }: +{ lib, fetchFromGitHub, buildPythonPackage, python, flake8, six, + fetchurl }: buildPythonPackage rec { pname = "flake8-future-import"; @@ -11,6 +12,17 @@ buildPythonPackage rec { rev = version; sha256 = "0622bdcfa588m7g8igag6hf4rhjdwh74yfnrjwlxw4vlqhg344k4"; }; + + patches = [ + # Tests in 0.4.3 are broken. We can remove this patch after + # the next release. + (fetchurl { + url = "https://github.com/xZise/flake8-future-import/commit/b4f5a06b22c574fb5270574d1420715667768d5c.patch"; + sha256 = "06n9ggz9p9kiwjb3vmaj44pm5vi4nhgzjfn7i730m85xn67xzmyn"; + }) + ]; + + propagatedBuildInputs = [ flake8 six ]; meta = { homepage = https://github.com/xZise/flake8-future-import; diff --git a/pkgs/development/python-modules/hupper/default.nix b/pkgs/development/python-modules/hupper/default.nix new file mode 100644 index 000000000000..3a8426e201f8 --- /dev/null +++ b/pkgs/development/python-modules/hupper/default.nix @@ -0,0 +1,20 @@ +{ buildPythonPackage, fetchPypi, python +, pytest, pytestcov, watchdog, mock +}: + +buildPythonPackage rec { + pname = "hupper"; + version = "1.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "02lj6kgaf9xpr0binxwac3gpdhljglyj9fr78s165jc7qd7mifdg"; + }; + + checkPhase = '' + py.test + ''; + + checkInputs = [ pytest pytestcov watchdog mock ]; +} diff --git a/pkgs/development/python-modules/keystoneauth1/default.nix b/pkgs/development/python-modules/keystoneauth1/default.nix index 17792723e4a3..7405f7f74cd5 100644 --- a/pkgs/development/python-modules/keystoneauth1/default.nix +++ b/pkgs/development/python-modules/keystoneauth1/default.nix @@ -2,24 +2,34 @@ , pbr, testtools, testresources, testrepository, mock , pep8, fixtures, mox3, requests-mock , iso8601, requests, six, stevedore, webob, oslo-config +, pyyaml, betamax, oauthlib }: buildPythonPackage rec { pname = "keystoneauth1"; - version = "3.1.0"; + version = "3.2.0"; name = "${pname}-${version}"; disabled = isPyPy; # a test fails src = fetchPypi { inherit pname version; - sha256 = "e5abfa8bbe866d52ca56afbe528d15214a60033cc1dc9804478cae7424f0f8fb"; + sha256 = "0rg3harfyvai34lrjiqnl1crmvswjvj8nsviasnz4b9pcvp3d03n"; }; - buildInputs = [ pbr testtools testresources testrepository mock - pep8 fixtures mox3 requests-mock ]; - propagatedBuildInputs = [ iso8601 requests six stevedore - webob oslo-config ]; + buildInputs = [ pbr ]; + checkInputs = [ pyyaml betamax oauthlib testtools testresources + testrepository mock pep8 fixtures mox3 requests-mock ]; + propagatedBuildInputs = [ iso8601 requests six stevedore webob ]; + doCheck = true; + # 1. oslo-config + # 2. oslo-utils + # 3. requests-kerberos + preCheck = '' + rm keystoneauth1/tests/unit/loading/test_{session,conf,adapter}.py + rm keystoneauth1/tests/unit/access/test_v{2,3}_access.py + rm keystoneauth1/tests/unit/extras/kerberos/test_fedkerb_loading.py + ''; postPatch = '' sed -i 's@python@${python.interpreter}@' .testr.conf substituteInPlace requirements.txt --replace "argparse" "" diff --git a/pkgs/development/python-modules/livereload/default.nix b/pkgs/development/python-modules/livereload/default.nix new file mode 100644 index 000000000000..fa9067fa0fee --- /dev/null +++ b/pkgs/development/python-modules/livereload/default.nix @@ -0,0 +1,35 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, nose +, django +, tornado +, six +, pytest +}: + +buildPythonPackage rec { + pname = "livereload"; + version = "2.5.1"; + name = "${pname}-${version}"; + + src = fetchFromGitHub { + owner = "lepture"; + repo = "python-livereload"; + rev = "v${version}"; + sha256 = "1irs59wqmffp8q4l9fh7givs05mamlgm5n7ga49gwxp5imwrdzba"; + }; + + buildInputs = [ nose django ]; + + propagatedBuildInputs = [ tornado six ]; + + checkInputs = [ pytest ]; + checkPhase = "pytest tests"; + + meta = { + description = "Runs a local server that reloads as you develop"; + homepage = "https://github.com/lepture/python-livereload"; + license = lib.licenses.bsd3; + }; +} diff --git a/pkgs/development/python-modules/oslo-config/default.nix b/pkgs/development/python-modules/oslo-config/default.nix index 51b2f0df75dc..fce8c21284c7 100644 --- a/pkgs/development/python-modules/oslo-config/default.nix +++ b/pkgs/development/python-modules/oslo-config/default.nix @@ -1,16 +1,17 @@ -{ buildPythonPackage, fetchPypi, pbr, six, netaddr, stevedore, mock }: +{ lib, buildPythonPackage, fetchPypi, pbr, six, netaddr, stevedore, mock, +debtcollector, rfc3986, pyyaml, oslo-i18n }: buildPythonPackage rec { pname = "oslo.config"; - version = "4.11.0"; + version = "4.12.0"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "1be8aaba466a3449fdb21ee8f7025b0d3d252c8c7568b8d5d05ceff58617cd05"; + sha256 = "1pa9lajsadyq47bmxx12dxlcmnqsqlgnb55hwqas26lgnb2073dx"; }; - propagatedBuildInputs = [ pbr six netaddr stevedore ]; + propagatedBuildInputs = [ pbr six netaddr stevedore debtcollector rfc3986 pyyaml oslo-i18n ]; buildInputs = [ mock ]; # TODO: circular import on oslo-i18n @@ -20,6 +21,12 @@ buildPythonPackage rec { substituteInPlace requirements.txt --replace "argparse" "" ''; - # Requires a bunch of new packages - meta.broken = true; + meta = with lib; { + description = "Oslo Configuration API"; + homepage = "https://docs.openstack.org/oslo.config/latest/"; + license = licenses.asl20; + maintainers = with maintainers; [ makefu ]; + }; + + } diff --git a/pkgs/development/python-modules/phonenumbers/default.nix b/pkgs/development/python-modules/phonenumbers/default.nix index 53ec2c292fcc..5f54fb12ec23 100644 --- a/pkgs/development/python-modules/phonenumbers/default.nix +++ b/pkgs/development/python-modules/phonenumbers/default.nix @@ -2,12 +2,12 @@ buildPythonPackage rec { pname = "phonenumbers"; - version = "8.8.1"; + version = "8.8.2"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "09f4b307v6wn5zs6spvp5icwad3dz9baf7d14hyvpnxn7cdqj2xy"; + sha256 = "0xwis5hvp2wmnzqxax8896vhyb3q2fs9l9ilvyr44jdh3342dxpx"; }; meta = { diff --git a/pkgs/development/python-modules/plaster-pastedeploy/default.nix b/pkgs/development/python-modules/plaster-pastedeploy/default.nix new file mode 100644 index 000000000000..330ecfc7c672 --- /dev/null +++ b/pkgs/development/python-modules/plaster-pastedeploy/default.nix @@ -0,0 +1,22 @@ +{ buildPythonPackage, fetchPypi, python +, plaster, PasteDeploy +, pytest, pytestcov +}: + +buildPythonPackage rec { + pname = "plaster_pastedeploy"; + version = "0.4.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1lrbkya5birfmg9gnfcnsa9id28klmjcqbm33rcg69pv9sfld4jv"; + }; + + checkPhase = '' + py.test + ''; + + propagatedBuildInputs = [ plaster PasteDeploy ]; + checkInputs = [ pytest pytestcov ]; +} diff --git a/pkgs/development/python-modules/plaster/default.nix b/pkgs/development/python-modules/plaster/default.nix new file mode 100644 index 000000000000..9f370a9c0fb3 --- /dev/null +++ b/pkgs/development/python-modules/plaster/default.nix @@ -0,0 +1,20 @@ +{ buildPythonPackage, fetchPypi, python +, pytest, pytestcov +}: + +buildPythonPackage rec { + pname = "plaster"; + version = "0.5"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "0z48pis4qyhyqj3ia82r04diaa153dw66wrpbly06hdzvhw8j0ia"; + }; + + checkPhase = '' + py.test + ''; + + checkInputs = [ pytest pytestcov ]; +} diff --git a/pkgs/development/python-modules/platformio/default.nix b/pkgs/development/python-modules/platformio/default.nix new file mode 100644 index 000000000000..329da89bf723 --- /dev/null +++ b/pkgs/development/python-modules/platformio/default.nix @@ -0,0 +1,32 @@ +{ stdenv, buildPythonPackage, fetchPypi +, arrow, bottle, click_5, colorama +, lockfile, pyserial, requests +, semantic-version +, isPy3k, isPyPy +}: +buildPythonPackage rec { + disabled = isPy3k || isPyPy; + + pname = "platformio"; + version="3.4.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1b4lba672l851sv1xwc320xbh46x7hx4ms6whc0k37hxkxj0nwm2"; + }; + + propagatedBuildInputs = [ + arrow bottle click_5 colorama + lockfile pyserial requests semantic-version + ]; + + patches = [ ./fix-searchpath.patch ]; + + meta = with stdenv.lib; { + description = "An open source ecosystem for IoT development"; + homepage = http://platformio.org; + maintainers = with maintainers; [ mog makefu ]; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/platformio/fix-searchpath.patch b/pkgs/development/python-modules/platformio/fix-searchpath.patch new file mode 100644 index 000000000000..a215ffc7d614 --- /dev/null +++ b/pkgs/development/python-modules/platformio/fix-searchpath.patch @@ -0,0 +1,11 @@ +--- ./platformio/util.py-old 2017-09-29 01:20:08.174548250 +0200 ++++ ./platformio/util.py 2017-09-29 01:19:48.410485308 +0200 +@@ -395,7 +395,7 @@ + isdir(join(p, "click")) or isdir(join(p, "platformio"))) + if all(conditions): + _PYTHONPATH.append(p) +- os.environ['PYTHONPATH'] = os.pathsep.join(_PYTHONPATH) ++ os.environ['PYTHONPATH'] = os.pathsep.join(sys.path) + + + def get_serialports(filter_hwid=False): diff --git a/pkgs/development/python-modules/pyblake2/default.nix b/pkgs/development/python-modules/pyblake2/default.nix new file mode 100644 index 000000000000..4e166dcb1837 --- /dev/null +++ b/pkgs/development/python-modules/pyblake2/default.nix @@ -0,0 +1,24 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "pyblake2"; + version = "0.9.3"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "626448e1fe1cc01d2197118954bec9f158378577e12686d5b01979f7f0fa2212"; + }; + + # requires setting up sphinx doctest + doCheck = false; + + meta = { + description = "BLAKE2 hash function extension module"; + license = lib.licenses.publicDomain; + homepage = https://github.com/dchest/pyblake2; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/pyserial/default.nix b/pkgs/development/python-modules/pyserial/default.nix new file mode 100644 index 000000000000..95ab0f339b06 --- /dev/null +++ b/pkgs/development/python-modules/pyserial/default.nix @@ -0,0 +1,21 @@ +{ lib, fetchPypi, buildPythonPackage }: + +buildPythonPackage rec { + pname = "pyserial"; + version="3.4"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "09y68bczw324a4jb9a1cfwrbjhq179vnfkkkrybbksp0vqgl0bbf"; + }; + + checkPhase = "python -m unittest discover -s test"; + + meta = with lib; { + homepage = "https://github.com/pyserial/pyserial"; + license = licenses.psfl; + description = "Python serial port extension"; + maintainers = with maintainers; [ makefu ]; + }; +} diff --git a/pkgs/development/python-modules/pysmbc/default.nix b/pkgs/development/python-modules/pysmbc/default.nix new file mode 100644 index 000000000000..b2d204e9b9b4 --- /dev/null +++ b/pkgs/development/python-modules/pysmbc/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchPypi +, samba, pkgconfig +, setuptools }: + +buildPythonPackage rec { + version = "1.0.15.8"; + pname = "pysmbc"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + extension = "tar.bz2"; + sha256 = "07dzxfdqaj6zjg2rxxdww363bh8m02mcvgk47jw005cik9wc2rq5"; + }; + + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ setuptools samba ]; + + meta = with stdenv.lib; { + description = "libsmbclient binding for Python"; + homepage = https://github.com/hamano/pysmbc; + license = licenses.gpl2Plus; + }; +} diff --git a/pkgs/development/python-modules/redis/default.nix b/pkgs/development/python-modules/redis/default.nix new file mode 100644 index 000000000000..87700d8edc43 --- /dev/null +++ b/pkgs/development/python-modules/redis/default.nix @@ -0,0 +1,19 @@ +{ stdenv, fetchPypi, buildPythonPackage }: +buildPythonPackage rec { + pname = "redis"; + version = "2.10.6"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "03vcgklykny0g0wpvqmy8p6azi2s078317wgb2xjv5m2rs9sjb52"; + }; + + # tests require a running redis + doCheck = false; + + meta = { + description = "Python client for Redis key-value store"; + homepage = "https://pypi.python.org/pypi/redis/"; + }; +} diff --git a/pkgs/development/python-modules/requests-toolbelt/default.nix b/pkgs/development/python-modules/requests-toolbelt/default.nix new file mode 100644 index 000000000000..e7834e62b829 --- /dev/null +++ b/pkgs/development/python-modules/requests-toolbelt/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchPypi +, requests +, betamax +, mock +, pytest +}: + +buildPythonPackage rec { + pname = "requests-toolbelt"; + version = "0.8.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "f6a531936c6fa4c6cfce1b9c10d5c4f498d16528d2a54a22ca00011205a187b5"; + }; + + checkInputs = [ betamax mock pytest ]; + propagatedBuildInputs = [ requests ]; + + checkPhase = '' + py.test tests + ''; + + meta = { + description = "A toolbelt of useful classes and functions to be used with python-requests"; + homepage = http://toolbelt.rtfd.org; + maintainers = with lib.maintainers; [ matthiasbeyer jgeerds ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/requests/default.nix b/pkgs/development/python-modules/requests/default.nix index b85bb54a4f15..f3ff4a84f1e8 100644 --- a/pkgs/development/python-modules/requests/default.nix +++ b/pkgs/development/python-modules/requests/default.nix @@ -12,6 +12,8 @@ buildPythonPackage rec { sha256 = "0zi3v9nsmv9j27d0c0m1dvqyvaxz53g8m0aa1h3qanxs4irkwi4w"; }; + outputs = [ "out" "dev" ]; + nativeBuildInputs = [ pytest ]; propagatedBuildInputs = [ urllib3 idna chardet certifi ]; # sadly, tests require networking diff --git a/pkgs/development/python-modules/requestsexceptions/default.nix b/pkgs/development/python-modules/requestsexceptions/default.nix new file mode 100644 index 000000000000..35d723836c95 --- /dev/null +++ b/pkgs/development/python-modules/requestsexceptions/default.nix @@ -0,0 +1,27 @@ +{ lib, buildPythonPackage, fetchPypi, pbr }: + +buildPythonPackage rec { + pname = "requestsexceptions"; + version = "1.3.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "0gim00vi7vfq16y8b9m1vpy01grqvrdrbh88jb98qx6n6sk1n54g"; + }; + + propagatedBuildInputs = [ pbr ]; + + # upstream hacking package is not required for functional testing + patchPhase = '' + sed -i '/^hacking/d' test-requirements.txt + ''; + + meta = with lib; { + description = "Import exceptions from potentially bundled packages in requests."; + homepage = "https://pypi.python.org/pypi/requestsexceptions"; + license = licenses.asl20; + maintainers = with maintainers; [ makefu ]; + patforms = platforms.all; + }; +} diff --git a/pkgs/development/python-modules/semantic-version/default.nix b/pkgs/development/python-modules/semantic-version/default.nix new file mode 100644 index 000000000000..f9e04691c1cb --- /dev/null +++ b/pkgs/development/python-modules/semantic-version/default.nix @@ -0,0 +1,21 @@ +{ lib, fetchPypi, buildPythonPackage }: + +buildPythonPackage rec { + pname = "semantic_version"; + version = "2.6.0"; + name = "${pname}${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1h2l9xyg1zzsda6kjcmfcgycbvrafwci283vcr1v5sbk01l2hhra"; + }; + + # ModuleNotFoundError: No module named 'tests' + doCheck = false; + + meta = with lib; { + description = "A library implementing the 'SemVer' scheme"; + license = licenses.bsdOriginal; + maintainers = with maintainers; [ layus makefu ]; + }; +} diff --git a/pkgs/development/python-modules/sqlalchemy-migrate/default.nix b/pkgs/development/python-modules/sqlalchemy-migrate/default.nix index 9b431f29acb8..258f84e8c72a 100644 --- a/pkgs/development/python-modules/sqlalchemy-migrate/default.nix +++ b/pkgs/development/python-modules/sqlalchemy-migrate/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { sha256 = "0ld2bihp9kmf57ykgzrfgxs4j9kxlw79sgdj9sfn47snw3izb2p6"; }; - checkInputs = [ unittest2 scripttest pytz pylint mock testtools ]; + checkInputs = [ unittest2 scripttest pytz pylint mock testtools tempest-lib ]; propagatedBuildInputs = [ pbr tempita decorator sqlalchemy six sqlparse ]; checkPhase = '' @@ -27,12 +27,12 @@ buildPythonPackage rec { ${python.interpreter} setup.py test ''; - # Tests require tempest-lib which requires the broken oslo-config - doCheck = false; + doCheck = true; meta = with stdenv.lib; { homepage = http://code.google.com/p/sqlalchemy-migrate/; description = "Schema migration tools for SQLAlchemy"; license = licenses.asl20; + maintainers = with maintainers; [ makefu ]; }; } diff --git a/pkgs/development/python-modules/tiros/default.nix b/pkgs/development/python-modules/tiros/default.nix index ab7de4bfa772..c0056eb66b3b 100644 --- a/pkgs/development/python-modules/tiros/default.nix +++ b/pkgs/development/python-modules/tiros/default.nix @@ -1,20 +1,15 @@ -{ stdenv -, fetchPypi -, buildPythonPackage -, semantic-version -, boto3 -, flask -, docutils +{ stdenv, fetchPypi, buildPythonPackage +, semantic-version, boto3, flask, docutils, requests }: buildPythonPackage rec { pname = "tiros"; name = "${pname}-${version}"; - version = "1.0.38"; + version = "1.0.39"; src = fetchPypi { inherit pname version; - sha256 = "0k668z9gb5vh304gysynj4rxgi24wy2vl4a33dnwkri2g6db3s4n"; + sha256 = "10wh84lpl7k8i69hlxwrzp2lln63w2afv9l7ij7r3lqjwd0z0skr"; }; patchPhase = '' @@ -22,5 +17,5 @@ buildPythonPackage rec { sed -i "s/'datetime',//" setup.py ''; - propagatedBuildInputs = [ semantic-version boto3 flask docutils ]; + propagatedBuildInputs = [ semantic-version boto3 flask docutils requests ]; } diff --git a/pkgs/development/python-modules/twine/default.nix b/pkgs/development/python-modules/twine/default.nix new file mode 100644 index 000000000000..a3f0df8ca2ce --- /dev/null +++ b/pkgs/development/python-modules/twine/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pkginfo +, requests +, requests_toolbelt +, tqdm +, pyblake2 +}: + +buildPythonPackage rec { + pname = "twine"; + version = "1.9.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "caa45b7987fc96321258cd7668e3be2ff34064f5c66d2d975b641adca659c1ab"; + }; + + propagatedBuildInputs = [ pkginfo requests requests_toolbelt tqdm pyblake2 ]; + + # Requires network + doCheck = false; + + meta = { + description = "Collection of utilities for interacting with PyPI"; + homepage = https://github.com/pypa/twine; + license = lib.licenses.asl20; + maintainer = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index fa2659aa347f..b3feb98ebc3c 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2017-08-24"; }; +let derive2 = derive { snapshot = "2017-09-27"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; @@ -27,6 +27,7 @@ in with self; { ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; ADM3 = derive2 { name="ADM3"; version="1.3"; sha256="1hg9wjdhckilqd13dr4cim4j6jsh2sdwm18i3pfmfdj8cyswm3h0"; depends=[]; }; ADMMnet = derive2 { name="ADMMnet"; version="0.1"; sha256="15f1zhgv7xai954qz2ahj4kpxyvr2svxpmybz7j43bhjpkq72dmq"; depends=[Matrix Rcpp RcppEigen]; }; + ADPF = derive2 { name="ADPF"; version="0.0.1"; sha256="1n7302xx77ngvp9i2h582i1mqslzllcdr0bn3pl2zk9jd8k97p7n"; depends=[]; }; ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; }; AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; }; AER = derive2 { name="AER"; version="1.2-5"; sha256="0qksj91h1c5kaci0w7q1n6780669di146ll5wnbjppnkz57z237g"; depends=[car Formula lmtest sandwich survival zoo]; }; @@ -57,8 +58,8 @@ in with self; { AMORE = derive2 { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; }; ANLP = derive2 { name="ANLP"; version="1.3"; sha256="1m1jnfaqny6qprgyk4f3naan5i5cildawv322h6mc25nypwl12m4"; depends=[dplyr qdap RWeka tm]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; - ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.0.0"; sha256="0wqzsyp8bs8ib1l98pqm4hl6xqziqras4k7xykvgmfcgbwfmsbhd"; depends=[quadprog shiny]; }; - APML0 = derive2 { name="APML0"; version="0.2"; sha256="1v407c025528ia21h0zj6qylp3b1p3j3mqrlycc892zli69fxp6g"; depends=[Matrix Rcpp RcppEigen]; }; + ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.1"; sha256="1gx61xzcjqsrqhcxjza5j8wq20rddf7r6z3xvrwjz24svyggr6xg"; depends=[quadprog shiny]; }; + APML0 = derive2 { name="APML0"; version="0.4"; sha256="0cl2ylfwmkzjv0jjr77am5747y6vh1vv457zlp89h9miz4pcjcfl"; depends=[Matrix Rcpp RcppEigen]; }; APSIM = derive2 { name="APSIM"; version="0.9.2"; sha256="0yyjz1kyvqpw9dh71ls2lf44gbb6r7bp9a22mr3z68k89azps5rc"; depends=[data_table lubridate plyr RSQLite sirad stringr]; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; APfun = derive2 { name="APfun"; version="0.1.1"; sha256="0vb5lmyq8wnwnxikhslaqxd65rs2pv0k3l5bghdzj6s0hp1j6kxp"; depends=[raster rgdal]; }; @@ -72,8 +73,8 @@ in with self; { ARTP = derive2 { name="ARTP"; version="2.0.4"; sha256="1f6ay9lyaqsc33b0larb8v6imp5adaycya84wif2sg32rv4gx3yl"; depends=[]; }; ARTP2 = derive2 { name="ARTP2"; version="0.9.32"; sha256="12mrxssjcj08svdsrxv2nm53mzsgy1k0whd5zzy6fz327bjyqsrz"; depends=[data_table Formula]; }; ARTool = derive2 { name="ARTool"; version="0.10.4"; sha256="1malrjv4myk9nj3dndgpzscfhky4y6lj8xbfg8h2b29g7s2k846q"; depends=[car dplyr lme4 magrittr plyr]; }; - ASIP = derive2 { name="ASIP"; version="0.3.1"; sha256="10r7566c5w6s898mlnzj25f0xgd0r6qi9yvzwp4vi026b0bdrcl2"; depends=[gdalUtils raster rgdal]; }; - ASMap = derive2 { name="ASMap"; version="1.0-1"; sha256="0qkw8wxlad327yydgisc7905qbszqr7x64bpkmjrbzain0ina4xv"; depends=[fields gtools lattice qtl RColorBrewer]; }; + ASIP = derive2 { name="ASIP"; version="0.3.2"; sha256="0zrn3hnn46zxmvchicyzy7zz2jnv8y1249a6sdi3w9rw2d8q025g"; depends=[gdalUtils raster rgdal]; }; + ASMap = derive2 { name="ASMap"; version="1.0-2"; sha256="0fhivq5i2py79jkwfms0my77p9x8lrkn5vn1lwbsawfkyar4dvkq"; depends=[fields gtools lattice qtl RColorBrewer]; }; ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; }; ASSISTant = derive2 { name="ASSISTant"; version="1.2-3"; sha256="072lmvmdi5yfyfda42vs556ciwj2rnka02isnknk6czir3947nck"; depends=[mvtnorm R6]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; @@ -81,12 +82,12 @@ in with self; { AUC = derive2 { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; }; AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; AUtests = derive2 { name="AUtests"; version="0.98"; sha256="0m2nl55qfwfzlf92f43b9q75xqvrlx7qzcz6qlnjbjcr80s0qj9q"; depends=[logistf]; }; - AWR = derive2 { name="AWR"; version="1.11.89"; sha256="0mg48720ny2a28yfwqx5p4r7g7rbjbzzgbkd2m31hfyz4vnrsr4v"; depends=[rJava]; }; + AWR = derive2 { name="AWR"; version="1.11.189"; sha256="0q9ss6cyx8vv85zif5v4s2bkv0amhyvzbs41mjjgmwb1csg53jgd"; depends=[rJava]; }; AWR_Athena = derive2 { name="AWR.Athena"; version="1.1.0"; sha256="0vix7lx3kl0gm5jy1w4dp60qff485j5mvfvd972qs4zhcn4yv02b"; depends=[rJava RJDBC]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; }; AbSim = derive2 { name="AbSim"; version="0.2.2"; sha256="0z2d3rjpr4fw0m3b1hdb5dz7mciw61jadbapgs0258j3j3r4knyp"; depends=[ape poweRlaw]; }; - AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5"; sha256="0071llj6xqsj495nlnvhzsqbrvls7fs3xscng537332xinmfhwdr"; depends=[DESeq limma Rcpp RcppArmadillo]; }; + AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5.1"; sha256="15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"; depends=[Biobase DESeq limma Rcpp RcppArmadillo]; }; AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-5"; sha256="18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"; depends=[]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.1"; sha256="16rmwz51fy84w83vwnq2nv9mcrp4gi9ciirj5555gl1224b9i2am"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; @@ -95,8 +96,9 @@ in with self; { AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; }; AdMit = derive2 { name="AdMit"; version="2.1.3"; sha256="150zjxl56axhpgm25hzyhwwc5g77pkgi291d2v56zbjjqycfz2v8"; depends=[mvtnorm]; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; }; + AdapSamp = derive2 { name="AdapSamp"; version="1.0"; sha256="1nww2c3kz1a62ivkvlcvhgx68wdk9ka8jhw1k8pilbgairxsbxgn"; depends=[pracma]; }; AdaptFit = derive2 { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; }; - AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.62"; sha256="0cxl58by9mfd6hf4hb2d5qnm0pgb0gplgg7mm0qhvckvghjpb00q"; depends=[MASS mgcv nlme SemiPar]; }; + AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.65"; sha256="0f92dgfiglbklr4lv5kqxks8d04f675jlj2xjy9aqk4cgdj264xk"; depends=[MASS mgcv nlme SemiPar]; }; AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.3"; sha256="0f6wk9ds8ayzi0fj1dz1m3755d1sjv4v5vc1hjhfxaim127kmbqh"; depends=[caTools ggplot2 shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.4"; sha256="1az7isvalf3kmdiycrfl6s9k9xqk22k1mc6rh8v0jmcz402qyq8z"; depends=[Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; @@ -112,8 +114,10 @@ in with self; { AlignStat = derive2 { name="AlignStat"; version="1.3.1"; sha256="1x9nlf3z6rpfca3k3cqm673sid418mnl44df9v93nyj5dpd70ylc"; depends=[ggplot2 Rcpp reshape2 seqinr]; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="1.3.4"; sha256="1jpn497plvgv1f9nwfpp5n765n7jr43cs5kz807a3fld8sjy0x2i"; depends=[]; }; + AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; }; Amelia = derive2 { name="Amelia"; version="1.7.4"; sha256="0w6532s5xr7pw47zqhhymql7i68c4lralvw1gc26l9d4c7ib00fd"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; + AmesHousing = derive2 { name="AmesHousing"; version="0.0.2"; sha256="0grms331mndk86nsyjp9why1ikjx7ycnf9hccvwkxkf86n0519w9"; depends=[dplyr magrittr]; }; AmmoniaConcentration = derive2 { name="AmmoniaConcentration"; version="0.1"; sha256="05pnwfji9l9az4jvni6jy7cayzg5pbspz82a63kmj6rgibn4ywvn"; depends=[]; }; AmostraBrasil = derive2 { name="AmostraBrasil"; version="1.2"; sha256="06y555gl9g89gygrv1rhg8j1bhb38m09mvvw67wvwhdl56j0fqbd"; depends=[foreign RCurl rgdal RJSONIO sp stringr]; }; AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1"; sha256="1vqpahavsksphxjyhd94dghg9ddskbfbs5vl5qcwl3jkjfvl7lwy"; depends=[ggplot2 xtable]; }; @@ -124,11 +128,11 @@ in with self; { AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="0.2.1"; sha256="100mbmdllk6c32j75jviz2k9kmwca3jvrqb95a555alfcpkfim8c"; depends=[]; }; AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; }; - AnnotationBustR = derive2 { name="AnnotationBustR"; version="1.0"; sha256="14cdkbwv6bf0h6na200gwq6gdldzawsvzk9pnpixj1kq2n8amm6b"; depends=[ape seqinr]; }; + AnnotationBustR = derive2 { name="AnnotationBustR"; version="1.1"; sha256="1pdwb4zmvirbn3aikd66djhzwga18w50krgn43mlw5dpa9c7fvhv"; depends=[ape seqinr]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; - AnthropMMD = derive2 { name="AnthropMMD"; version="2.2.0"; sha256="037d3543ga2dzp2bch0270vy8mchnfsfcabjh5kbgx8bbr9cmgkk"; depends=[shiny]; }; - Anthropometry = derive2 { name="Anthropometry"; version="1.8"; sha256="0drbpffi9qx04vrf60fim30l4xkyvn13mvpr3csyqdfhi0wwn990"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; + AnthropMMD = derive2 { name="AnthropMMD"; version="2.2.1"; sha256="0rh5s616q56kxmlbw4nazff0qvpmbdzyvygf9q4iqfzs9a9ln2wy"; depends=[shiny]; }; + Anthropometry = derive2 { name="Anthropometry"; version="1.9"; sha256="1d1grh952kfpanz4vpvdbnx4yn42kkc6z78cc601l70azar2p7zg"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.2"; sha256="01h8hi76nlwn9hnfyvzyg2d25s2r0vgpl5rz37yqkhjs5xr3rpyi"; depends=[doParallel foreach stringr]; }; AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-6"; sha256="004d2k3mhl45inb7kx1ph8xc8h9bgm7f7l3prmvqrl5792400cn4"; depends=[CORElearn MASS plyr reshape2]; }; AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; }; @@ -147,6 +151,7 @@ in with self; { AsynchLong = derive2 { name="AsynchLong"; version="2.0"; sha256="1wjby75rpypzyrxnv2lgl7h2fsvyni3bpiwclp0x7cl4sxic1x5c"; depends=[]; }; AtelieR = derive2 { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58xg9wvqcril8j8yd61lkkmz4b3195zai"; depends=[cairoDevice gWidgetsRGtk2 partitions proto]; }; AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; }; + AurieLSHGaussian = derive2 { name="AurieLSHGaussian"; version="0.2.0"; sha256="0dzwqv396inbx4r6758vr4gip1y42ahavspadgm4xhafvipg73rb"; depends=[flexclust igraph lsa reshape2 stringdist]; }; AutoDeskR = derive2 { name="AutoDeskR"; version="0.1.3"; sha256="1n7c8ris8b517bs1wahpvrhwfbvn2q4jbq01kgiv9lfmkjckzfkc"; depends=[httr jsonlite shiny]; }; AutoModel = derive2 { name="AutoModel"; version="0.4.9"; sha256="07wpdf5b1z6lk69nqybzx333zc57wbnga6dp0vkf1d50hxmpd9yc"; depends=[aod BaylorEdPsych broom car dplyr gtools lmtest MASS ROCR rowr]; }; AutoSEARCH = derive2 { name="AutoSEARCH"; version="1.5"; sha256="1s2ldhxijd8n9ba78faik6gn4f07pdzksy0030pqyafxlr3v1qdj"; depends=[lgarch zoo]; }; @@ -160,11 +165,11 @@ in with self; { BACprior = derive2 { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[boot leaps mvtnorm]; }; BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; BALCONY = derive2 { name="BALCONY"; version="0.1.6"; sha256="13hy0ysg3vsm6v1acqwdifl4g3z6gxv97by49pq5adkjizhvsyvz"; depends=[Rpdb scales seqinr]; }; - BAMBI = derive2 { name="BAMBI"; version="1.1.0"; sha256="1578iifmjzlhxvgih8l5va07w6zk8d6li7j1w91033lfpzivahr0"; depends=[label_switching Rcpp RcppArmadillo]; }; + BAMBI = derive2 { name="BAMBI"; version="1.1.1"; sha256="1jzvsaf9cn28ny40vg0wlvdqz6f4i7n6iyym8s0aj58aiazwsmh5"; depends=[label_switching Rcpp RcppArmadillo]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; }; BANFF = derive2 { name="BANFF"; version="2.0"; sha256="1c5wdwqqvkcm9910lhd387snd7myv9qzs9vfk87vzp3di7hdi4l6"; depends=[coda doParallel DPpackage flexmix foreach GGally igraph mclust network pscl truncnorm]; }; - BANOVA = derive2 { name="BANOVA"; version="0.9"; sha256="1d2azyvz49lzsic133pgii6cfqkbyc9k4kpzs4diqy6s1bl62769"; depends=[coda rjags rstan runjags]; }; - BART = derive2 { name="BART"; version="1.2"; sha256="0clg63avxldr4h6dzv3pl087ms2a2zhg570xy7l9zjgh00v2zb2p"; depends=[Rcpp survival]; }; + BANOVA = derive2 { name="BANOVA"; version="0.9.1"; sha256="0vjpvxjkxwnwd85g4igpwf2g82i4hlvwq8x02ap7srjd2b2h6av1"; depends=[coda rjags rstan runjags]; }; + BART = derive2 { name="BART"; version="1.3"; sha256="1jlch8r9jklfjjlmjmdxsjw8lsqzc1wmgr4b94phlj4cgxxbc8ri"; depends=[Rcpp survival]; }; BAS = derive2 { name="BAS"; version="1.4.6"; sha256="0fhldihrl94aj4kx5wlqyy7i8d9cm92zhk33ilarrymmksccinmp"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; BASS = derive2 { name="BASS"; version="0.2.2"; sha256="1q3sihp2iv1ikggzgd2k3vh2myz8bz31rzlaavw0n84d0h1zjxy2"; depends=[]; }; @@ -196,19 +201,19 @@ in with self; { BEDMatrix = derive2 { name="BEDMatrix"; version="1.4.0"; sha256="0aha33skksh45fx248lx6v8cxwgkiripw3avspb8arbld9rmqwxn"; depends=[BH crochet Rcpp]; }; BEQI2 = derive2 { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; }; BEST = derive2 { name="BEST"; version="0.5.0"; sha256="178vn0ps6nr7qjayavnvmbyx6gq57dni5llsncl89kkz633mb2hg"; depends=[coda HDInterval rjags]; }; - BETS = derive2 { name="BETS"; version="0.3.1"; sha256="0w95nb4l63872rc5m24mz2n5gvr8wfs9kfy8f8dcabyl1nhlml0y"; depends=[DBI DT dygraphs forecast foreign ggplot2 grnn htmltools lubridate miniUI plotly RCurl rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; + BETS = derive2 { name="BETS"; version="0.3.2"; sha256="11fzwh7r371y6aqjn568jfv3qjaxyj4ij4rg56nj3ahzrimfgdg2"; depends=[DBI DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly RCurl rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BGData = derive2 { name="BGData"; version="1.0.0"; sha256="0xd7xpnvhpyvv6caxyif7wa25llvrnyzmmk4z6rp7absjqbz2alc"; depends=[BEDMatrix bigmemory bit ff LinkedMatrix symDMatrix]; }; BGLR = derive2 { name="BGLR"; version="1.0.5"; sha256="14a979rnasaklkfafzpkhr6mqv0ga7fsfxq63scpnlwa2aasgn83"; depends=[]; }; BGPhazard = derive2 { name="BGPhazard"; version="1.2.3"; sha256="1yp92y5y3xh0hb1ring6jrma8g4q6210hm9572j8ji1jkafzxjw1"; depends=[survival]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; - BH = derive2 { name="BH"; version="1.62.0-1"; sha256="01vfdpfznd4ynqql33z238xr262mvy3i80lyi8l3a3p3hi0a262p"; depends=[]; }; + BH = derive2 { name="BH"; version="1.65.0-1"; sha256="0n6byzrvl1w4hjdxz479q4a7w1118f9ckqc4gqydq7lgzs5agfl2"; depends=[]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="1.1"; sha256="1qygizn2np9amkm1f1332zp9ab9ky423plr9lahgwzdxn1c2c5c2"; depends=[AnalyzeFMRI fmri wavethresh]; }; BHPMF = derive2 { name="BHPMF"; version="1.0"; sha256="0b7dl4wxhkk47cnj1dxdjnf094cabqb8ncyl7pdi0zx6h4py9h8w"; depends=[Matrix]; }; BIEN = derive2 { name="BIEN"; version="1.2.2"; sha256="11bqbkw6v4yvlvpv0bhmn5q7ady12hmp9ziak5jzsc7p4d8azd5r"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="2.2-22"; sha256="1m5kybi4mp7ghhv0cwdgfpqbclrp317wncns0hpbqywcqngxy3j4"; depends=[miceadds mitools Rcpp RcppArmadillo survey TAM]; }; - BIGDAWG = derive2 { name="BIGDAWG"; version="1.14.2"; sha256="11y6fjq36szb7mdc6s22s4ji2hd3n7pqsyp9qr3665wp8lvw011c"; depends=[haplo_stats knitr rmarkdown XML]; }; - BIGL = derive2 { name="BIGL"; version="1.0.1"; sha256="0qv57xknvivy3y1zppp0qnjy38124sgay9apj76s4bgf82kfyaiv"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; + BIGDAWG = derive2 { name="BIGDAWG"; version="1.16"; sha256="04l0x8g81ij7varj0s40fsmajfkr630s70f0brv41s4zcznv25sz"; depends=[haplo_stats knitr rmarkdown XML]; }; + BIGL = derive2 { name="BIGL"; version="1.1.0"; sha256="18qsdw3nb3wjrzdr3yg8kfqxbv761c5gc6qg937k8g87wiagrplp"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; BIOMASS = derive2 { name="BIOMASS"; version="1.1"; sha256="1qawp10hw7xhqyg9bdwvgxbksiwhga7h6vwp8m7q30ibwfv5kamg"; depends=[httr jsonlite minpack_lm msm raster]; }; BIOdry = derive2 { name="BIOdry"; version="0.5"; sha256="0isvqs2bgirxwb7b1dbn70zfx9b4mw7fp33fwmxq0dx6k1r4f87g"; depends=[ecodist nlme]; }; @@ -223,15 +228,17 @@ in with self; { BMN = derive2 { name="BMN"; version="1.02"; sha256="12gyq01cn6a9ixqgki1ihx5jrp2gw6jdj7q210rb12xlvj3p6x7w"; depends=[]; }; BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; }; BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; + BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; }; + BMhyb = derive2 { name="BMhyb"; version="1.5.1"; sha256="1xrf9l4bgksa0v40ywsbbbj7l2ixn6lndx3xx020c8xf7jgfpv7x"; depends=[ape corpcor DEoptim geiger lhs Matrix mvtnorm numDeriv phylobase phytools TreeSim viridis]; }; BMhyd = derive2 { name="BMhyd"; version="1.2-8"; sha256="14pv5f621zq5x9i408zjm8k80hcsabkjpdf86gk3ylgw5yqcivrx"; depends=[ape corpcor geiger mvtnorm numDeriv phylobase phytools TreeSim]; }; BMisc = derive2 { name="BMisc"; version="1.0.1"; sha256="0r16aacsdag3b6vz0jbfvchdy10giwchdcnhri20l6bg7kwjvjwb"; depends=[formula_tools]; }; BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; }; - BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="0.2.0"; sha256="1w8p8fkiai2xqgf0w8imv55p8s1nvsfdfmyrq2cnc5b8m1gw457k"; depends=[MASS matrixcalc mvtnorm plyr truncnorm]; }; + BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.2.4"; sha256="06s0cs3anbby93n7pjcin9195agfzfq9im6f9k7ih3cbg8mzfaqy"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; }; BNPMediation = derive2 { name="BNPMediation"; version="0.1.0"; sha256="0bfsayhhhf60qr8nvs4yhshnb7ank70529abpqdxb506ni67pny1"; depends=[condMVNorm DPpackage mnormt]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2017.03"; sha256="0anpi75wwx91dbm937ydgcpd8wchm0nyciy4xdhppsvzq9v3d2hp"; depends=[]; }; - BNSL = derive2 { name="BNSL"; version="0.1.2"; sha256="0phvbxijrb29hs20g1f1nz5s449zv7mgrymlczc5vpsq8nq2y4vm"; depends=[bnlearn igraph Rcpp]; }; - BNSP = derive2 { name="BNSP"; version="2.0.1"; sha256="08flz440ki467xsr8pg8y02n74p9wncawqpghchzm5zwb82wjdmw"; depends=[coda ggplot2 gridExtra plot3D threejs]; }; + BNSL = derive2 { name="BNSL"; version="0.1.3"; sha256="1918dc73gasac45kzcf4pxvl8iaawzkqdi03ny0napbjr3z8rss2"; depends=[bnlearn igraph Rcpp]; }; + BNSP = derive2 { name="BNSP"; version="2.0.2"; sha256="0vapcf8qxcdmragbmwai4yddpmwwm79mksf4zcych0d4a0ij39h6"; depends=[coda ggplot2 gridExtra plot3D threejs]; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; BOIN = derive2 { name="BOIN"; version="2.4"; sha256="0vb3bkaq9vl1yqm3dhdpd27nhv2095n3lp90fr961jpwj1xhjh5l"; depends=[Iso]; }; BPEC = derive2 { name="BPEC"; version="1.1"; sha256="14bkpmi1rmpl728nb7kmbmd687s5cvlzj181cxzwcaz3yb8x58nw"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools R2G2 sp]; }; @@ -239,7 +246,7 @@ in with self; { BSDA = derive2 { name="BSDA"; version="1.2.0"; sha256="0gs33yyca45jd4f5k5f7qid4ayw2rnl2wl7a6m7vf39dfx7ympm2"; depends=[e1071 lattice]; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; }; - BSSasymp = derive2 { name="BSSasymp"; version="1.2-0"; sha256="1xs6gfvsla7h1sldckjfpw3qx7fhxiqzv849g3k6w1309r7pv75r"; depends=[fICA JADE]; }; + BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; }; BSagri = derive2 { name="BSagri"; version="0.1-8"; sha256="148pr4lkgdi4bwc9lavgj356nh240iazz28xklq14rw4gzhmz2k4"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; BSquare = derive2 { name="BSquare"; version="1.1"; sha256="1s16307m5gj60nv4m652iisyqi3jw5pmnvar6f52rw1sypfp5n49"; depends=[quadprog quantreg VGAM]; }; BTLLasso = derive2 { name="BTLLasso"; version="0.1-6"; sha256="03yfkwgjscki9xbv6myyhdhbz6xrd81zny576vvwqyz14l1sygs0"; depends=[Matrix Rcpp RcppArmadillo stringr TeachingDemos]; }; @@ -262,7 +269,7 @@ in with self; { BarBorGradient = derive2 { name="BarBorGradient"; version="1.0.5"; sha256="0g2g7hrm23as1xbj79g48r8sj3gsj66fmi895jqlqfbqrl2fl7a5"; depends=[]; }; BarcodingR = derive2 { name="BarcodingR"; version="1.0-2"; sha256="1mn5rdax8v1s2z3apk9z0kzy4hw19m8ql6j91l6wd29g2n2bjqxx"; depends=[ape class nnet sp]; }; Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; }; - Barycenter = derive2 { name="Barycenter"; version="1.0"; sha256="0dqa3fzrwcaqgkj883v9cn5v0zl3rl32zlqzx9lbqzbrlchxgc3k"; depends=[Rcpp RcppArmadillo]; }; + Barycenter = derive2 { name="Barycenter"; version="1.2"; sha256="077b66pj60sryjnd6zkwqdd5hvbqh4pj8r65k4jb2rjvlbqyxln8"; depends=[Rcpp RcppArmadillo]; }; BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.1"; sha256="0fg7p0q6avc0kcwcd3z4q3akrr2mkrx2yf9zcd6hhz22l3x4aphz"; depends=[BatchJobs BBmisc checkmate DBI plyr RSQLite]; }; BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="1.2"; sha256="06ndhdsnpc7i367xksghgkwx1m6h6finwj0sab9ivcwpqb4n5h6f"; depends=[curl quantmod rvest stringr]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.6"; sha256="1kb99024jih5bycc226bl4jyvbbl1sg72q3m2wnlshl7s8p6vva0"; depends=[BBmisc brew checkmate DBI digest fail RSQLite sendmailR stringr]; }; @@ -270,11 +277,12 @@ in with self; { BayClone2 = derive2 { name="BayClone2"; version="1.1"; sha256="1wprdj22zh8fwqawcv4m2n2y7sqwh2f6m9b0cq0rp4ll774yz30i"; depends=[combinat]; }; BayHap = derive2 { name="BayHap"; version="1.0.1"; sha256="0xqnl2cbf0pyjlpywyy0j4mwknfn8msz4s719dsri3r7hvn9m6kd"; depends=[boa]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; + BayLum = derive2 { name="BayLum"; version="0.1.1"; sha256="1qgpn7blazgb1mkjcnn8x0j7z3k6vgcqpg0vm4gg4r4pxyw61b9n"; depends=[ArchaeoPhases coda hexbin Luminescence rjags]; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; BayesBD = derive2 { name="BayesBD"; version="1.2"; sha256="10ik2lndqgmy6pvdm6cx4fsxgjb2fgi6hlz5ic35ab7fkpi90ka5"; depends=[jpeg mritc png Rcpp RcppArmadillo shiny]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; BayesBridge = derive2 { name="BayesBridge"; version="0.6"; sha256="1j03m465pwq0lhbrfvddjglrzs6px7bc89yvfzj776amm7myqd0l"; depends=[]; }; - BayesCR = derive2 { name="BayesCR"; version="2.0"; sha256="0cafind5vz81ryw1c7324hyfc6922fsxmjnvddb4mrhis54id2r4"; depends=[mnormt mvtnorm Rlab rootSolve truncdist]; }; + BayesCR = derive2 { name="BayesCR"; version="2.1"; sha256="1qav7l64iqqdvr1v6c7hlzvbx7zbvsa55pyisvkq5rsayy1rdsl1"; depends=[mnormt mvtnorm rootSolve truncdist]; }; BayesCombo = derive2 { name="BayesCombo"; version="1.0"; sha256="01rzjja0xzvqyjivl8a9da13v13ylm4dwv4f27cmgz2znakfg5y8"; depends=[]; }; BayesComm = derive2 { name="BayesComm"; version="0.1-2"; sha256="1rrbvwcfm93cw0m33g0zn6nyshfjc97kb3fby9cga0zaixc0a8rk"; depends=[abind coda mvtnorm Rcpp RcppArmadillo]; }; BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; @@ -300,7 +308,7 @@ in with self; { BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; }; - BayesVarSel = derive2 { name="BayesVarSel"; version="1.7.0"; sha256="10w9l8jz7j72npl0z2smngrsmb4ga88gn37ps1xn3fyql999iz7d"; depends=[MASS mvtnorm]; }; + BayesVarSel = derive2 { name="BayesVarSel"; version="1.7.1"; sha256="08zhy1brhb4zyishwgsc0hnmplw776d6qvakx39jiwbi02nvwvx9"; depends=[MASS mvtnorm]; }; BayesX = derive2 { name="BayesX"; version="0.2-9"; sha256="0p170m8zkaspiah1fdyql9lj9yqg6sl525blzq7wwgx5wx4rvncs"; depends=[coda colorspace maptools shapefiles sp]; }; BayesXsrc = derive2 { name="BayesXsrc"; version="2.1-2"; sha256="114804f6maak5dmwzw4cbigjcdw7c6sgx48af35yrvkspi1gsz3b"; depends=[]; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; @@ -322,12 +330,12 @@ in with self; { BeviMed = derive2 { name="BeviMed"; version="5.3"; sha256="01q5pr776ki973bcld20cqpsz9f10bb30vj95da9gbz5af6bvb14"; depends=[Rcpp]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; - BiDAG = derive2 { name="BiDAG"; version="1.0.1"; sha256="089nixy13mi9z4vqb5dsrxf0g472d7ax5rrlrqmhr19pjfh800cq"; depends=[pcalg Rcpp]; }; + BiDAG = derive2 { name="BiDAG"; version="1.0.2"; sha256="1y91vb9g6642c0j7cr3g9fg999fxb7bhbfvm0bdlnaixpbnky6qa"; depends=[pcalg Rcpp]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="1.0.6"; sha256="1kgrk4xanvxqdq619ha08wwplmsn2xqygx4dziagx48iqfpp1lxj"; depends=[nlme]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; BiTrinA = derive2 { name="BiTrinA"; version="1.2"; sha256="0q2wqxj2ipmppilhvq80cnvhnhcp26h422i8ghx26nrkswhx378s"; depends=[diptest]; }; BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; - BibPlots = derive2 { name="BibPlots"; version="0.0.1"; sha256="0bmgyla44aw7mski7yw91mqzabhsf65j8bd6dvgaa8shvwhz6dqq"; depends=[]; }; + BibPlots = derive2 { name="BibPlots"; version="0.0.2"; sha256="04j5wmdy464sgv1yz4km9i14i3j95qr3m2vi96nmsy5158ga9ilz"; depends=[]; }; BigQuic = derive2 { name="BigQuic"; version="1.1-7"; sha256="1bhi9dilrprgjvqyc2hb4a0y8rm9la0m5lgry9mf184p56z1syzb"; depends=[Matrix Rcpp scalreg]; }; BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; @@ -339,25 +347,27 @@ in with self; { Binarize = derive2 { name="Binarize"; version="1.2"; sha256="014iagr76y3v7ljn6zlbg1hxwbwdi889bqxa7hwmqrcybnla22ja"; depends=[diptest]; }; BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; }; BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.0"; sha256="08w5zcyrfz55x86nwpb4k0w0lpk1ncirjp30p46421w0xz8swk10"; depends=[expm Formula lmtest numDeriv]; }; + BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; BioGeoBEARS = derive2 { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[ape cladoRcpp FD gdata optimx phylobase plotrix rexpokit xtable]; }; - BioInstaller = derive2 { name="BioInstaller"; version="0.2.0"; sha256="1pfgmpn6bwzxqac6jywkfkdi1jh99z93zlpcf8dpc9926zpjik7b"; depends=[configr devtools futile_logger git2r R_utils RCurl rvest stringi stringr]; }; + BioInstaller = derive2 { name="BioInstaller"; version="0.2.1"; sha256="0479cv5hq73s8vm8y8wdxkvv7dqnnjx1gk6zzlbssy084czlf71s"; depends=[configr devtools futile_logger git2r R_utils RCurl rvest stringi stringr]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioPET = derive2 { name="BioPET"; version="0.2.1"; sha256="0pwkgffm8hlgvpk3dfzskl50kp9b4rnxc8aj119kwrmlfazhhl50"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPhysConnectoR = derive2 { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[matrixcalc snow]; }; BioStatR = derive2 { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; }; Biocomb = derive2 { name="Biocomb"; version="0.3"; sha256="0shhsljg0knfp83b3hrs2c674sqx2348h5m99jhf19jf1i98pf1k"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; }; - BiodiversityR = derive2 { name="BiodiversityR"; version="2.8-3"; sha256="11574bspbp7kfm0g9mmpi0vh0lyfrjqkccpdsrashsbcij96rcv6"; depends=[Rcmdr vegan]; }; + BiodiversityR = derive2 { name="BiodiversityR"; version="2.8-4"; sha256="18g283cs9fz5nscni4kaai6z7w0p2g619n3wzdz6kqmjdafy6bhv"; depends=[Rcmdr vegan]; }; Biograph = derive2 { name="Biograph"; version="2.0.6"; sha256="0vklqwbifbac3v9ws9fs22yxpqqk5b3m96qzr8j0irnimb5kgh5p"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; }; Biolinv = derive2 { name="Biolinv"; version="0.1-1"; sha256="1fnx9fcybw8agc2zba61lk4ygq8qi3b747i5cnh1b3vh6dw5fapq"; depends=[classInt fields raster sp spatstat]; }; + Bios2cor = derive2 { name="Bios2cor"; version="1.2"; sha256="00fzvj20x85gcpb9l6rfnm3qml8nnl365z1a68j90qi14wy6dfh6"; depends=[bigmemory bio3d circular igraph]; }; BisRNA = derive2 { name="BisRNA"; version="0.2.1"; sha256="1sjx53lkdhiygr2w7drs9c47hnmv2s232bsd96d6k2xn6yai593i"; depends=[knitr MASS]; }; BivRegBLS = derive2 { name="BivRegBLS"; version="1.0.0"; sha256="1fi399vv54dnfywxbc8yb1r58lrl7zpqkahvcx3f5svjy20dvvbw"; depends=[ellipse]; }; BivUnifBin = derive2 { name="BivUnifBin"; version="1.1"; sha256="0dxkk3pjnbjx04r9870lcr3hl4r5j7cd3y1fn800fz0qjnv5dahd"; depends=[BinOrdNonNor rootSolve]; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; }; BlakerCI = derive2 { name="BlakerCI"; version="1.0-5"; sha256="16zj678qzwqih92q19dma7a602d0hif2dhii5hvxdgjymg7hg2bj"; depends=[]; }; BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; }; - Blaunet = derive2 { name="Blaunet"; version="2.0.4"; sha256="195ijmn3y9rzcincvjwivaclbs0d9bglb83ss62yfjzw2jpfvc54"; depends=[network]; }; + Blaunet = derive2 { name="Blaunet"; version="2.0.6"; sha256="0zbc7nc962hr4j604zx1xn15xwnfwws55xiwgp61r7a3vfsysg7g"; depends=[cairoDevice ergm foreign gWidgets gWidgetsRGtk2 haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; }; Blossom = derive2 { name="Blossom"; version="1.4"; sha256="0002rvz0mlwl2clglzqldg0x5l8lj07qh74ifpdaf1lrdailh328"; depends=[]; }; Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; }; @@ -374,13 +384,15 @@ in with self; { BootPR = derive2 { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; BootWPTOS = derive2 { name="BootWPTOS"; version="1.2"; sha256="1860l11xg7444l3x42rq3636csla23gg0mi5in1zibjwn1ddc202"; depends=[fractal wavethresh]; }; Boruta = derive2 { name="Boruta"; version="5.2.0"; sha256="111rp7lbq79p7c1w4dkzhb9wh32mns5p17xxq0qbjzaiv41377dy"; depends=[ranger]; }; - BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.0-6"; sha256="1080q7fw4yfl2y0jh3w2xz342i5yhhhavq40i3902bsmjj8g531d"; depends=[brglm gtools lme4]; }; + BosonSampling = derive2 { name="BosonSampling"; version="0.1.1"; sha256="0wxn12h903a0mlrkrr3w4qd9ld2a4bifs95i98cnl2dsb76rwf12"; depends=[Rcpp RcppArmadillo]; }; + BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.0-8"; sha256="09c6zdzf5k5x7zv5m6ygl4k5xbprlpb6s3lrq432mmv8rn2yi58z"; depends=[brglm gtools lme4 qvcalc]; }; BradleyTerryScalable = derive2 { name="BradleyTerryScalable"; version="0.1.0"; sha256="0g12fkfs2sykyd6fzf924zv8gj2js452c4pf0pz2p6156chwrk8c"; depends=[dplyr igraph Matrix purrr Rcpp RcppArmadillo]; }; BrailleR = derive2 { name="BrailleR"; version="0.26.0"; sha256="1grqs3sb1xk28vmpcbidb6s805wqzkrrx41qqz7jc5y8vpspba51"; depends=[devtools extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest pander rmarkdown XML xtable]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-4"; sha256="1saxa492f32f511vw0ys55z3kgyzhswxkylw9k9ccl87zgbszf3a"; depends=[]; }; BrownDog = derive2 { name="BrownDog"; version="0.2.0"; sha256="0i1rvrxb67kx3m3p84b7rrajjz5k3xj18qy631iqkg596p007940"; depends=[httpuv jsonlite RCurl]; }; Brq = derive2 { name="Brq"; version="2.0"; sha256="0j6d1m2drzy1wyr5y25qb8gs6555vh0lkyh415kw17x9dj4ks0zx"; depends=[]; }; + Brundle = derive2 { name="Brundle"; version="1.0.5"; sha256="18r54afnh8lylly89qpsgy39r81qkpijx482p62m2dsswhfhj022"; depends=[DESeq2 DiffBind lattice Rsamtools]; }; BsMD = derive2 { name="BsMD"; version="2013.0718"; sha256="1yvazqlbmm221r7nkhrhi309gkk6vx7ji5xlvf07klya2zg20gcj"; depends=[]; }; BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; @@ -398,9 +410,10 @@ in with self; { CARBayesdata = derive2 { name="CARBayesdata"; version="2.0"; sha256="0mlqlqm50k4lqyvbjva7vji9jqa3rwi5ky5521rp5l4nqlj53sfb"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; - CARS = derive2 { name="CARS"; version="0.1"; sha256="1l996731f29z54cyjp6x303xj8i6rrjkkwfsx79d0569b8dqv3rd"; depends=[np]; }; + CARS = derive2 { name="CARS"; version="0.2"; sha256="1n8p4n9fbl20jps9g9pbspw54hq9y6kqbggc8h0i9pbm1b25ngrg"; depends=[np]; }; CARrampsOcl = derive2 { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; + CATTexact = derive2 { name="CATTexact"; version="0.1.0"; sha256="0mklkmay9ph4d0z2l1gcg0lj429xkyhmz7srdil5rgwqxx9dnqs8"; depends=[]; }; CATkit = derive2 { name="CATkit"; version="3.0.0.2"; sha256="1afaa1s8clynpna9hwgbgfdp5jciv0n5q9vb27cgyl9n69nla991"; depends=[magic MASS png rtf season signal]; }; CAvariants = derive2 { name="CAvariants"; version="3.4"; sha256="1mrqvcgnxbzah7vhqqqdygds8plwswd2l8w0aq5132byhhc4kiax"; depends=[]; }; CBCgrps = derive2 { name="CBCgrps"; version="2.1"; sha256="0cvgcpvdvpvjkzkwapx0y4a666xq54dwm00w4w9n8fhgp05mnkn8"; depends=[nortest]; }; @@ -444,6 +457,7 @@ in with self; { CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; }; CMF = derive2 { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; }; CMPControl = derive2 { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; + CMatching = derive2 { name="CMatching"; version="1.0"; sha256="1qvixshdkv1sgy4ianfcvb4mfnc05rwm7hxs3rssnma7m9j3g2np"; depends=[lme4 lmtest Matching multiwayvcov]; }; CMplot = derive2 { name="CMplot"; version="3.2.1"; sha256="0gnqqw59xsjq671kiykj8k1qx1m2j7hj8dsnh7ccirpq55hqajff"; depends=[]; }; CNLTreg = derive2 { name="CNLTreg"; version="0.1"; sha256="1fjc45kv2nm902vpfynfxj0n7nm2prazm44nhg2m30vd6l1ijisv"; depends=[adlift miscTools nlt]; }; CNLTtsa = derive2 { name="CNLTtsa"; version="0.1"; sha256="0s98ckg6ms3kh49b8la2d8rsdb0m4m0v8gdbj48nqxncdvg25qk4"; depends=[adlift CNLTreg fields nlt]; }; @@ -453,7 +467,7 @@ in with self; { CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; }; COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; - COCONUT = derive2 { name="COCONUT"; version="1.0.1"; sha256="1bpn1zhlbm99w8d80lp7iasi1ivvh0ndhpzh8glmnlnanm2b06ni"; depends=[]; }; + COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.2"; sha256="1sda41db8h5gi7gqq0hj433dd6lh4xj75skjgmgqa3p80rndw461"; depends=[corpcor mvtnorm]; }; COMBIA = derive2 { name="COMBIA"; version="1.0-4"; sha256="02yadw3zjkj0ljq2c5k5zfsn8qnlvr6gxgafzrqw9g95cawv8q4x"; depends=[gdata hash lattice latticeExtra oro_nifti]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.4.1"; sha256="14gjrf2hj7dy4hd0qnh6vqjzh7gc6g7gm7rh1d8dingkjwmjzrqb"; depends=[]; }; @@ -504,7 +518,7 @@ in with self; { CateSelection = derive2 { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; CausalFX = derive2 { name="CausalFX"; version="1.0.1"; sha256="0v0diqq9fa1v9n3v5m5shvwlgmj91cbbb78243rwib1h3pyacihf"; depends=[igraph rcdd rje]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-3"; sha256="0g68m2kxixwr7rx65r57m1n0qa161igc428zh9rj91fg6h4pdq4w"; depends=[gam]; }; - CausalImpact = derive2 { name="CausalImpact"; version="1.2.1"; sha256="1y17icqia2iwd0q7nm1ngb3r51xq9r2qqm6k271znfpmv6pkp890"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; + CausalImpact = derive2 { name="CausalImpact"; version="1.2.3"; sha256="16qwf1kcs7x6qw18zpabs4zsv3m7xwxixf89krnipydiwlpxjjn6"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; Causata = derive2 { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[boot data_table foreach ggplot2 glmnet R_utils RCurl rjson RMySQL stringr XML yaml]; }; CePa = derive2 { name="CePa"; version="0.5"; sha256="1y2q72j8bqx509i62a2x9j40rj5bkpgx4z6fwj05ibazc1441asd"; depends=[igraph snow]; }; CellularAutomaton = derive2 { name="CellularAutomaton"; version="1.1-1"; sha256="0kmw2ic161xwalqa63hznic4n4hdz20hsilf2awlcldg7m9si1zd"; depends=[R_methodsS3 R_oo]; }; @@ -526,8 +540,7 @@ in with self; { ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; ChemoSpec = derive2 { name="ChemoSpec"; version="4.4.85"; sha256="1wb9jvrsydia9lnc0pw55lngiqwa62ff02bfqj1slmr53nw864mp"; depends=[plyr]; }; - ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.10"; sha256="0pdi7lbn97bs11x9dy4aa7zi2warqswk0gak4gr5ap4l69vh0baj"; depends=[devtools kohonen MASS pls]; }; - ChemometricsWithRData = derive2 { name="ChemometricsWithRData"; version="0.1.3"; sha256="14l1y4md8hxq8gvip5vgg07vcr0d9yyhm5ckhzk8zwprdabn9a10"; depends=[]; }; + ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.11"; sha256="00z09bplm5qvd31y7m4b4knsrl0n27j9635m1gdak6lg4db4nxrd"; depends=[devtools kohonen MASS pls]; }; ChoR = derive2 { name="ChoR"; version="0.0-1"; sha256="1zxzgmww368zfdd3fq4wmj4v9prh8fqdb2d3wplqszxjf1irmb45"; depends=[rJava]; }; ChocoLattes = derive2 { name="ChocoLattes"; version="0.1.0"; sha256="0ircdar4fswaf34969gzgn83ia891jvwl29jn4s9a87cc4qagzgr"; depends=[ggplot2 knitr plotly R_utils rmarkdown WriteXLS XML]; }; ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; @@ -547,7 +560,7 @@ in with self; { ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; }; ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; - CluMix = derive2 { name="CluMix"; version="2.0"; sha256="0bp85yhz7mj0ljmqrlj72q817vwcdibsxhadv0jjfxw1bwjhh1mh"; depends=[Biobase ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; }; + CluMix = derive2 { name="CluMix"; version="2.1"; sha256="080gd6v8yj83djmf4wg7cwk6q6w6gsg4xfsgw5qd6z8h3kpyn45m"; depends=[Biobase ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; }; ClueR = derive2 { name="ClueR"; version="1.2"; sha256="17phjzpdx11sw259xk16h2w28xdaxxpzbh0sxli61icnssw35n7z"; depends=[e1071]; }; ClusVis = derive2 { name="ClusVis"; version="1.0.0"; sha256="0d8s4gd5dl4mc1538rhy2pwk1xfgbq2ca76qaqrl2q3mswb1p6wp"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod]; }; ClustGeo = derive2 { name="ClustGeo"; version="2.0"; sha256="1p5k2w1k7hnacbazzj2yhxh4z2jngnsl4v5a9b3c8z1dr4nhcwxc"; depends=[sp spdep]; }; @@ -634,11 +647,12 @@ in with self; { Coxnet = derive2 { name="Coxnet"; version="0.2"; sha256="023l1fcs0g5qqlslqfwb51nkmcqa0d5qp9bibhndd8gq7raz6ws6"; depends=[Matrix Rcpp RcppEigen]; }; CpGFilter = derive2 { name="CpGFilter"; version="1.1"; sha256="0ccvk7lawmay0wqdyhs6ww7396dcfzazn72sq6zwyw7dl45k2j0i"; depends=[matrixStats]; }; CpGassoc = derive2 { name="CpGassoc"; version="2.60"; sha256="1zx18x8pxjl2ajnj7a7lb8383m75ysg17f4mzz0vkgl5mnf617ny"; depends=[nlme]; }; - Cprob = derive2 { name="Cprob"; version="1.3"; sha256="1hahvkmniahhar47nha96vcj810895wgvvg9si112hnv3sjaql3r"; depends=[geepack lattice lgtdl prodlim tpr]; }; + Cprob = derive2 { name="Cprob"; version="1.4"; sha256="1kjw5hhb3fy12xlyg01i8ynl78gx0r57kvmgafbqix1s3pg2hyw6"; depends=[geepack lattice lgtdl prodlim tpr]; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; + CreditRisk = derive2 { name="CreditRisk"; version="0.1.0"; sha256="1nrzpafgd0liqa8b7mhg8xgkqp4kqgz1a60xzi5bh5wmxp9bqf99"; depends=[fOptions]; }; CrossClustering = derive2 { name="CrossClustering"; version="3.0"; sha256="0l9cdniqf63x4pfkf6y7c2qh056jwadqw45nz9jk78wamqq8hyqv"; depends=[cluster]; }; CrossScreening = derive2 { name="CrossScreening"; version="0.1.1"; sha256="1gig80r8p611ysn35ajx7xdjj5wnkcf1vspcf0i06dmh75xpm3w9"; depends=[plyr tables]; }; - CrossVA = derive2 { name="CrossVA"; version="0.9.0"; sha256="0q5fc2maxq70s6h6dmj6amn6xzrjn6rzcsnq0cqrah2c8b6y351y"; depends=[lubridate]; }; + CrossVA = derive2 { name="CrossVA"; version="0.9.1"; sha256="13skbazs1mh5am70qlwxhvxgfx4gwlzzq6zy3vdzaa3zbykkxlvw"; depends=[lubridate]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.1"; sha256="1v9fwhhy2xxrrn0xd2yg7ngy7adm85fmyvqhcvnpa91ifr4ijrly"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-16"; sha256="19697wy066apkxrm99s7vflc0ih6zxxmyvj7x3dzh2icnv1gg1bb"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; }; @@ -647,6 +661,7 @@ in with self; { Cubist = derive2 { name="Cubist"; version="0.0.19"; sha256="1bjajcr2qnmqy8cakgiy4q07nj9dygz15a9jry5sa4nbkabpj4qh"; depends=[lattice reshape2]; }; Cyclops = derive2 { name="Cyclops"; version="1.3.0"; sha256="0sznzzz21qn1cxxfa3wiwvfza7lykzzf0xyqvawha9vzm8qzgqnq"; depends=[BH bit ff ffbase Matrix Rcpp RcppEigen RcppParallel survival]; }; CytobankAPI = derive2 { name="CytobankAPI"; version="1.1.0"; sha256="1014r17krw74drykdlw24pgqylidp8yxa00zhf340ilcxfpacxyi"; depends=[curl httr jsonlite]; }; + CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="1.0"; sha256="0hr74igy43d5ybzlgqpvx9ingw6h83w502b6k55cp6zqcv5rl8d5"; depends=[CytobankAPI]; }; D2C = derive2 { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; }; D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; }; D3M = derive2 { name="D3M"; version="0.41.1"; sha256="1qr50xq5zccb16a1rgzfbb9bz8bbnxxb522nb8ga159nmb4cwjmp"; depends=[beanplot Rcpp]; }; @@ -654,6 +669,7 @@ in with self; { DAAG = derive2 { name="DAAG"; version="1.22"; sha256="16xp4qk09v9jwm4cs7b4mpn0kgl1va9rw86viwcjc54vjc32953f"; depends=[lattice latticeExtra]; }; DAAGbio = derive2 { name="DAAGbio"; version="0.63-3"; sha256="0n82d9nsvpl6cwp95by8ff9fmdafs2fdi603dlik5890adaw42x4"; depends=[limma]; }; DAAGxtras = derive2 { name="DAAGxtras"; version="0.8-4"; sha256="18lg13mbyharidj5j7ncx8s7d72v2hcnqr00vilhf3djk2mjq7xn"; depends=[]; }; + DAC = derive2 { name="DAC"; version="0.1.0"; sha256="0x27asjn1y8bxgc35ic4jpara4f7vn8w61fpg4glkjy5nbh5ss0p"; depends=[fGarch flexmix]; }; DAGGER = derive2 { name="DAGGER"; version="1.4"; sha256="0b2hzv001xhch7pqgb53lfpdcjwg5lj33i6pb884l1kx92svjfr7"; depends=[Matrix quadprog Rglpk]; }; DAISIE = derive2 { name="DAISIE"; version="1.4"; sha256="16653wwz20lhf3bpzflpj5d1h7j3cqyfaqk5gn24aifga2jc0wbb"; depends=[DDD deSolve Matrix subplex tensor]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; @@ -667,6 +683,7 @@ in with self; { DBItest = derive2 { name="DBItest"; version="1.5"; sha256="1mhygy6wdw22r43jcisyxc852q1lbzx4xi387csf2zqgl86xldw4"; depends=[blob DBI desc hms R6 testthat withr]; }; DBKGrad = derive2 { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; }; DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; + DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; DCG = derive2 { name="DCG"; version="0.9.2"; sha256="1s2dz0vnhdhq23fqds1m2jspaz8k5zvd76z1zlbi6nb5ja5n3j3w"; depends=[]; }; DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; DCL = derive2 { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; }; @@ -684,11 +701,12 @@ in with self; { DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; DEMEtics = derive2 { name="DEMEtics"; version="0.8-7"; sha256="1s59qim60d4gp5rxjacdbmxdbpdm7cy9samn088w8fs0q232vjjx"; depends=[]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; + DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; DESP = derive2 { name="DESP"; version="0.2-2"; sha256="1s5x6x36ra83izcyrgdzc26a02cbbgy3xxn32sl30z6srys1j3j3"; depends=[graph MASS Matrix RBGL SparseM]; }; DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; }; DEoptim = derive2 { name="DEoptim"; version="2.2-4"; sha256="10nlsvms5pf0wmn4z1lj6vnmpwr10q8nhdy5xy9rn7hd1627fm0a"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-8"; sha256="1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4"; depends=[]; }; - DEploid = derive2 { name="DEploid"; version="0.4.3"; sha256="1hcdf4iap81d332daqlzva6vs5glxj5523znl2rifx6r0m8kzagl"; depends=[magrittr plotly Rcpp scales]; }; + DEploid = derive2 { name="DEploid"; version="0.4.4"; sha256="1hcn54mn1kil6kg77j4aij15h69fnmp40d6xxfgijjcgydp211bf"; depends=[magrittr plotly Rcpp scales]; }; DFIT = derive2 { name="DFIT"; version="1.0-3"; sha256="1h0wvcplb7j7dqz9hkaw30x92ngxzkdvkwpg0142hrqb201zfrac"; depends=[ggplot2 mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.1"; sha256="1lqqzrsidkli4bk4jikq5f75jzqyzhv94n882yic5ndxgv26p9ic"; depends=[matrixStats WGCNA]; }; DHARMa = derive2 { name="DHARMa"; version="0.1.5"; sha256="1mgvpyhllp7pqnas5sbn6393jkin205109g2b4pn3diyb20avqwp"; depends=[ape doParallel foreach gap lme4 lmtest MASS mgcv qrnn sfsmisc]; }; @@ -704,6 +722,7 @@ in with self; { DMMF = derive2 { name="DMMF"; version="0.3.2.0"; sha256="17v7ksmknbgh7h9k2l6mgkykg0rq352nlw585yhfck0bvvb5vdb3"; depends=[raster rgdal sp]; }; DMR = derive2 { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; + DMRnet = derive2 { name="DMRnet"; version="0.1.0"; sha256="0p5iyj6zqrv1hsfdq7bp96ly8dkf2ky6gzilrha336lhm35ym7sr"; depends=[glmnet grpreg]; }; DMwR = derive2 { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; DNAseqtest = derive2 { name="DNAseqtest"; version="1.0"; sha256="1mpmf40vrpw8m75rlqchsnyrz12pgg5bkz7wfca5yy5sbbiwk5pf"; depends=[]; }; @@ -715,8 +734,8 @@ in with self; { DOT = derive2 { name="DOT"; version="0.1"; sha256="0qh5n57cp9c2n5yn59q4wggz82943pwfanp3kx869aba2x3sj30i"; depends=[V8]; }; DOvalidation = derive2 { name="DOvalidation"; version="0.1.0"; sha256="0vm4sxbchkj2hk91xnzj6lpj05jg2zcinlbcamy0x1lrbjffn9zk"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; - DPWeibull = derive2 { name="DPWeibull"; version="1.0"; sha256="01ssi5g9g1nx8ljfng6rbjbn3j229ajm16xfx39g5a2i9hndi45h"; depends=[DPpackage matrixStats Rcpp truncdist]; }; - DPpackage = derive2 { name="DPpackage"; version="1.1-6"; sha256="01qdl6cp6wkddl9fwwpxwvyhb7lpjxis6wnbm2s288y2n9wi4j24"; depends=[MASS nlme survival]; }; + DPWeibull = derive2 { name="DPWeibull"; version="1.1"; sha256="1q47bq5qanrqnx0j5zrij4lm5mkpiar58wxabwxfqdcr7yncm5pq"; depends=[matrixStats Rcpp truncdist]; }; + DPpackage = derive2 { name="DPpackage"; version="1.1-7"; sha256="027zwznkqn2ny21dqvmk1fclzxnvsf8lpn1ks0rbigc58df4cvx2"; depends=[MASS nlme survival]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; DRIP = derive2 { name="DRIP"; version="1.1"; sha256="050xfq30fp9m03ig938bci2haiglj6jj4k327fpz7r2y78cgcnn4"; depends=[caTools readbitmap]; }; DRR = derive2 { name="DRR"; version="0.0.2"; sha256="1scfwp6ry6apxzqjclsmn2frxp9qfw6zxsxn5w0j0q3sz42hz1h2"; depends=[CVST kernlab Matrix]; }; @@ -735,8 +754,9 @@ in with self; { DTMCPack = derive2 { name="DTMCPack"; version="0.1-2"; sha256="0bibas5cf06qq834x9q2l2fyh6q9wrg07k8cn6almcyirzax6811"; depends=[]; }; DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn = derive2 { name="DTRlearn"; version="1.2"; sha256="1dakwlafs27nkjsiknnwxnb2hgc2xdpi5mb6dmzpjig7hg2f8d3f"; depends=[ggplot2 glmnet kernlab MASS]; }; - DTRreg = derive2 { name="DTRreg"; version="1.2"; sha256="055m587pvvcysfarxhkvgl30qisgf3v1yry8qrk54vps70scm03v"; depends=[]; }; + DTRreg = derive2 { name="DTRreg"; version="1.3"; sha256="1144kcqblyrpdqyj9as6y47iq3x99bf76hdw6j43cmgcs11gapc3"; depends=[]; }; DVHmetrics = derive2 { name="DVHmetrics"; version="0.3.6"; sha256="0r3wjkr6grrh4nybrg0rs9ialrppjsdjshb47m0knn48vi0iwm77"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; + DWLasso = derive2 { name="DWLasso"; version="0.1.0"; sha256="11w6cds1cp90bcf7pj5klvby802vdn9a23pwdpjajw8bh17302qf"; depends=[glmnet hglasso Matrix]; }; DWreg = derive2 { name="DWreg"; version="2.0"; sha256="0bgahzgcxz86n0ady97l48zyahv3p2iyc2ivbij1xrfx3wcx3b5n"; depends=[DiscreteWeibull Ecdat maxLik survival]; }; DYM = derive2 { name="DYM"; version="0.2"; sha256="1rk0xs224xi68f0mrygny2rklggl4grk866q7y9xck38bwy7aw94"; depends=[]; }; DZEXPM = derive2 { name="DZEXPM"; version="1.0"; sha256="0qk93jsfrlbq4b9mgwq0fpyad7w81b0hcfa4xgaahd05p2jbcqrj"; depends=[]; }; @@ -764,6 +784,7 @@ in with self; { DeducerSurvival = derive2 { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; }; DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; Delaporte = derive2 { name="Delaporte"; version="6.1.0"; sha256="1gpckw6vd00cjpf164rmxxdvg08ky1as9rj7ls3l52ghyn0s3pxs"; depends=[]; }; + DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; }; Delta = derive2 { name="Delta"; version="0.1.1.11"; sha256="1fi5sgyrf86xmfxhglqxcc0hq5mpc8ar3nk2s4wx3rw4if3sdxdz"; depends=[]; }; Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; }; DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; @@ -773,15 +794,16 @@ in with self; { Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepthProc = derive2 { name="DepthProc"; version="2.0.2"; sha256="0n9hs6fp047gnd8y87rzx5qcr3hqg3pdck97hcbzkd8jsi1b1daw"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="3.8.1"; sha256="13q3y5981cglykga4qfxpad5sik66m1w273f2j1n0zh58s4da5rz"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.21"; sha256="1d4qrhp1xgdky24djixi7d1wv8hpyyn6w02zqxfr10q33lbw0y7w"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; + DescTools = derive2 { name="DescTools"; version="0.99.22"; sha256="0nl2zk0sp4fdilg6a5rgkidjg7xncy252ihbqpjia4bda8y23mkn"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="0.9.1"; sha256="10q51qakascv14f8yzp2izvd404230wzvygql23ja37xgkyhz3v1"; depends=[DescTools rstudioapi]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.5"; sha256="02b6yjgklsdjh3rikc8f5wfx08ymbygr3fyq1c134xhffhykrlgp"; depends=[GGally ggplot2 plyr reshape2 scales]; }; + DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.2.1"; sha256="0mb33ihqr8jj1ispykvyc7jn1wyaagb535ya5jgwlqrians41ihc"; depends=[jsonlite RCurl reshape]; }; DetMCD = derive2 { name="DetMCD"; version="0.0.4"; sha256="0jdwwx15k8g3f5izcswsj28nfdw3n50x710mc938031yn7hjmkhg"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.4"; sha256="0kvmbh7cdy3hmds1znahy1lqhd68y21kmmcki9xbq1b76n4h812n"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; DetSel = derive2 { name="DetSel"; version="1.0.2"; sha256="0igkccclmjwzk7sl414zlhiykym0qwaz5p76wf4i7yrpjgk7mhl9"; depends=[ash]; }; Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; Dforest = derive2 { name="Dforest"; version="0.4.0"; sha256="05a3hhddkyk1jlmgvlswa5bsaqlfpgvprzpays18rd7af60542n8"; depends=[ggplot2 rpart]; }; - DiagrammeR = derive2 { name="DiagrammeR"; version="0.9.1"; sha256="0aj45iyvrf1whm7k9gdd9hbwq8j7ffd7v6286wxqlknbrfjacp3p"; depends=[downloader dplyr htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rgexf rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; + DiagrammeR = derive2 { name="DiagrammeR"; version="0.9.2"; sha256="0fz6d1j4jkymdz94rad96wsjzw653zz3hi6p3n6nhacv2b2j97fw"; depends=[downloader dplyr htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rgexf rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.1.1"; sha256="1diwzckn0f2dv0vj2mdzy7k3md6j472xzj82ip23adwr27vlfsi3"; depends=[ggplot2]; }; DiceDesign = derive2 { name="DiceDesign"; version="1.7"; sha256="05bmscy275077kmbmg75npnmw30kd5x5wmlizcfq771zixby3f7h"; depends=[]; }; @@ -790,6 +812,7 @@ in with self; { DiceOptim = derive2 { name="DiceOptim"; version="2.0"; sha256="1hx4379yb6d36c494qc237vld4jnfxq18m994p5ii9ks6s7amifn"; depends=[DiceDesign DiceKriging mnormt pbivnorm randtoolbox rgenoud]; }; DiceView = derive2 { name="DiceView"; version="1.3-1"; sha256="0c7i1jy13d5bj822q1rp0d7gmmfjd00jaah34pnj8fzwyrq404z9"; depends=[DiceEval DiceKriging rgl]; }; DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; + Diderot = derive2 { name="Diderot"; version="0.11"; sha256="1lqrmgb3lxmkqyv0ys7w8fvr3n8vmgdnvhlqjqvkqys50x9a5pzl"; depends=[data_table doParallel foreach igraph RCurl splitstackshape stringi]; }; DiffCorr = derive2 { name="DiffCorr"; version="0.4.1"; sha256="1kxp9dbiww086rmvmjvfhbk7jl36dkj88qwii6zg57llf7l5l4hm"; depends=[fdrtool igraph multtest pcaMethods]; }; DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; @@ -816,7 +839,7 @@ in with self; { DiversitySampler = derive2 { name="DiversitySampler"; version="2.1"; sha256="1sfx7craykb82ncphvdj19mzc0kwzafhxlk9jcxkskygrlwsxfgg"; depends=[]; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; DoE_base = derive2 { name="DoE.base"; version="0.31"; sha256="0kr9d8ga6dif02gzn6z72n46a85n2kx933m16ja6gpa3wmp3x2wh"; depends=[combinat conf_design lattice MASS numbers vcd]; }; - DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.8-10"; sha256="12q3arfm76x9j8qnrmw07jh904qdqz59ga1zk8m3n17prr11vrgb"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; + DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.9"; sha256="0l4dxb0f4ql5k3x1avfzs1w54qwjxfp8rl9h9vg6p1zhbkz4qz06"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; DoEstRare = derive2 { name="DoEstRare"; version="0.2"; sha256="0y9ymw7114jk1rwiasq400bpgvkxv6rpc954c7v9mgxd3c2nfza7"; depends=[]; }; DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; }; Dodge = derive2 { name="Dodge"; version="0.8"; sha256="1vnvqb2qvl6c13s48pyfn1g6yfhc60ql3vn7yh2zymxcsr1gxgcw"; depends=[]; }; @@ -837,6 +860,7 @@ in with self; { DynNom = derive2 { name="DynNom"; version="4.1.1"; sha256="1c4hykp8fwr6h5y09m4qs23bmbaj6im2c833mv2ymlhy5bwhmnfi"; depends=[BBmisc compare ggplot2 plotly rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="3.01"; sha256="0kcg4yqh1srhcn4wp0k97ppwn6w8vh05y9ssn82sjhlgxfbhzzjx"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; + EAinference = derive2 { name="EAinference"; version="0.2.0"; sha256="1655m1li2xa4slcaj8sg5w5svm44gdcxmyy13w61i1g5zksd4fl3"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; }; EBMAforecast = derive2 { name="EBMAforecast"; version="0.52"; sha256="1809ia0dpkilprv7x19drp1v2qckk0wm596f1i1vl0k37wbhcziv"; depends=[abind Hmisc plyr Rcpp separationplot]; }; @@ -844,7 +868,7 @@ in with self; { EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; }; EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECFsup = derive2 { name="ECFsup"; version="0.1-2"; sha256="0fpcab0gjgsc3sx0plpx068rw3a7kfzs2nyrr477a5m0rcbqf1kh"; depends=[foreach Rcpp RcppArmadillo]; }; - ECOSolveR = derive2 { name="ECOSolveR"; version="0.3"; sha256="16cw13cxa24c1dkcn8qwkpim4lrjr7cgr8z59px7wi6fyh6v189g"; depends=[Matrix]; }; + ECOSolveR = derive2 { name="ECOSolveR"; version="0.3-2"; sha256="1awkylhsd0l5k2iflcx5y2779zhxjzr8l0xrk7v24m4nak6xj1jg"; depends=[Matrix]; }; ECctmc = derive2 { name="ECctmc"; version="0.2.4"; sha256="1aw0cbfgzlrkyc3m1rfhbdcdyb8wjcfx6p2mz1hvds86mf1pzv1i"; depends=[Rcpp RcppArmadillo]; }; ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.12"; sha256="0g0591dddkdvpq1wgw5wjz0b0qlwkjxi0zz9g33qs442ijq8v1wc"; depends=[jsonlite shiny]; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; }; @@ -861,13 +885,14 @@ in with self; { EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; }; EL2Surv = derive2 { name="EL2Surv"; version="1.0"; sha256="1vrm0w9rmy4vfkpzq804p216cxw4vvp91g77k4vvzv4z87gkqfhq"; depends=[survival]; }; ELMR = derive2 { name="ELMR"; version="1.0"; sha256="0pd3drv485xbdyfwm28kjpd0nd0zv1khfwzki1gh5p1gz9ndwr2x"; depends=[]; }; + ELMSurv = derive2 { name="ELMSurv"; version="0.4"; sha256="0vziygjvs50wih318jvksj4z4mn1r35xx200p7ywf2a39xmr4490"; depends=[Rcpp RcppArmadillo survival]; }; ELT = derive2 { name="ELT"; version="1.6"; sha256="0vbrf912m6f80sqyyrp0z4jhq38fnmcy6hgwy0qh8wgk3p1aqm7c"; depends=[lattice latticeExtra locfit xlsx]; }; ELYP = derive2 { name="ELYP"; version="0.7-3"; sha256="1d91r59m85k91kcjjlvhvbsa9855fyd702bwj7drvk36ssfr8qb9"; depends=[survival]; }; EMA = derive2 { name="EMA"; version="1.4.5"; sha256="16iq5a3yrilchqmkyb4g5bmmgpw6psm88n52gmlax75xbiwk8261"; depends=[affy AnnotationDbi Biobase biomaRt cluster FactoMineR gcrma GSA heatmap_plus MASS multtest siggenes survival xtable]; }; EMAtools = derive2 { name="EMAtools"; version="0.1.3"; sha256="1kzna29kd6s2hgli5azrfz85mbyl1x6knvhhhny2scf7a1fcijsy"; depends=[DataCombine ggplot2 lmerTest sjstats]; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; EMCC = derive2 { name="EMCC"; version="1.3"; sha256="166yqr17a72lhimpgbgzpf9frribj47n4rddzqd9m4xmh4f6x7x5"; depends=[EMC MASS mclust]; }; - EMCluster = derive2 { name="EMCluster"; version="0.2-7"; sha256="1ybffri9khfmliwp0xln3yzal7wx1h0qw3s7ixrx7zzvg58blryp"; depends=[MASS Matrix]; }; + EMCluster = derive2 { name="EMCluster"; version="0.2-8"; sha256="15ngm8k0iscasi1jcn4ffya0y4rq5llj5m7gjv8f61rw31yfyjm0"; depends=[MASS Matrix]; }; EMD = derive2 { name="EMD"; version="1.5.7"; sha256="0m2g7akg9h964d6qr1mj20h9pcb2fcmala3skhl0qpy8qz01w5ck"; depends=[fields locfit]; }; EML = derive2 { name="EML"; version="1.0.3"; sha256="04qz4rwq0amy9lp6358qjjql46ky2slqrvipngym5klqvm9vi0zi"; depends=[uuid xml2]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.4"; sha256="1i36s8mzp04alff6lqkc798xjzgn61wdpl5i0awjdvg26ka8v7lj"; depends=[GPArotation limSolve shape shiny]; }; @@ -888,6 +913,7 @@ in with self; { ENmisc = derive2 { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; }; EPGLM = derive2 { name="EPGLM"; version="1.1.2"; sha256="1x7n16pjr38gh5llraszjwgm650zmcm14j6v1kc5k81g4ghgdsq6"; depends=[BH MASS Rcpp RcppArmadillo]; }; EQL = derive2 { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[lattice ttutils]; }; + EQUIVNONINF = derive2 { name="EQUIVNONINF"; version="1.0"; sha256="103wrry0cmikprihmgx8y4kk1pnbjis7rs1xw13w14v902xkr2rq"; depends=[BiasedUrn]; }; ERP = derive2 { name="ERP"; version="1.1"; sha256="00w9zz5rp1asvk13sj9gkd14n2akbclsyz26jp5a3r85fh6chdm0"; depends=[fdrtool mnormt]; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; }; @@ -898,8 +924,9 @@ in with self; { ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.3"; sha256="13xq9i9fr34kx1nym7nr02gynshzm4jjn4qzx6ydg044b7xl57jp"; depends=[bit ff]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; - EWGoF = derive2 { name="EWGoF"; version="2.1"; sha256="10p392n003sxn8l9sfnksi789k1w191rmkah6gxhji5f41gib5rh"; depends=[Rcpp]; }; + EWGoF = derive2 { name="EWGoF"; version="2.2"; sha256="0limqk1hcpla9mz41ylm8qcvg8q4491d4dhhb1pbvdnskb70g5i4"; depends=[Rcpp]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; + Eagle = derive2 { name="Eagle"; version="1.0.2"; sha256="0n36h23jkac93d9f13bdwvac0fv198fjmh3981z32cn9glz0xbl8"; depends=[data_table matrixcalc Rcpp RcppEigen shiny shinyBS shinyjs shinythemes]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; EasyMARK = derive2 { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; }; @@ -910,10 +937,11 @@ in with self; { Ecfun = derive2 { name="Ecfun"; version="0.1-7"; sha256="0s4hhvwyi411xr7c1fv098nmwqjcyvh8vy65j5w9hd80l864lvkl"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1"; sha256="0ww0p4allaaz2zmj88105xr75gffcsycjjyy1ph4m9q7w5sw3c5y"; depends=[d3heatmap edgebundleR ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; }; - EcoIndR = derive2 { name="EcoIndR"; version="1.1"; sha256="12m0cwv3q0bsxqz0vrfnqb18vb61pqpsd0j7fn1bs2xmkwvwkbni"; depends=[]; }; + EcoIndR = derive2 { name="EcoIndR"; version="1.2"; sha256="1p2m4kramcf71xlm9hbk5l5mb8nmjfac1p3csai7m2gmikf559yj"; depends=[]; }; EcoSimR = derive2 { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; EcoVirtual = derive2 { name="EcoVirtual"; version="1.0"; sha256="1adhxwi22psr81xh1szjvn6ycv4zw31xjnswk65iazk3sc4vz7wc"; depends=[]; }; + Ecohydmod = derive2 { name="Ecohydmod"; version="1.0.0"; sha256="0imkzjqp3g28l42jz5m4p85wg5rawmn9hy1wys9xndnaliv6d7r2"; depends=[]; }; EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; }; EdSurvey = derive2 { name="EdSurvey"; version="1.0.6"; sha256="1p8cxr69ckz6py0hmagm9aq7kp1q48ymffmnpwsvwh2yfkzl90yq"; depends=[data_table LaF lfactors Matrix NAEPprimer wCorr]; }; EditImputeCont = derive2 { name="EditImputeCont"; version="1.0.2"; sha256="1l847892grqp1zf8lbvhxcimw06xcmikyry0wn1wf3l4hw4hiamv"; depends=[editrules Rcpp]; }; @@ -948,7 +976,7 @@ in with self; { Epi = derive2 { name="Epi"; version="2.19"; sha256="1zd5q5w8l9gvq0x5j00vwfb61kfadbziqmff5fm0cmwnvpizl55k"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival zoo]; }; EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.11.0"; sha256="1ry7s4snq6hgbw55b6w615f2y2iskpdcy9kpjg1zv6hp06b6hyqr"; depends=[]; }; - EpiCurve = derive2 { name="EpiCurve"; version="1.1-0"; sha256="1s6lhhc6n0dfbwaklc8fx9f0yi9r0yf5pf0fs955hiv5al98vaai"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales timeDate]; }; + EpiCurve = derive2 { name="EpiCurve"; version="2.0-1"; sha256="15y6nlinw3ppi4bn8xpsrch1avn7642f06lcsv2bjyi1carhfqkw"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales timeDate]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.0"; sha256="0hpysjl8wfgylbp4ddxmi5msvlp1w70c6pxggc2bwdgap3s127f3"; depends=[deSolve ggplot2 reshape2]; }; EpiEstim = derive2 { name="EpiEstim"; version="1.1-2"; sha256="0r56iglhkrqvlsf3gbahd544h944fmbyn6jdc113rhjscf6dl605"; depends=[]; }; EpiILM = derive2 { name="EpiILM"; version="1.2"; sha256="1mp6j1yk9vzs88clkpwgk0qlbc5b4m94j3isgirsq346006q5jil"; depends=[]; }; @@ -960,13 +988,13 @@ in with self; { EstHer = derive2 { name="EstHer"; version="1.0"; sha256="1j8sczwfzil16j85mw5d1c7cxy7wimh0qq7zhmkh7mfnr36m9phr"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; }; EstimateGroupNetwork = derive2 { name="EstimateGroupNetwork"; version="0.1.2"; sha256="148srhlpzh0scvnkjbkyia1pr8a2ridabm3dahw4zn7p3cryiyb1"; depends=[igraph qgraph]; }; - EthSEQ = derive2 { name="EthSEQ"; version="2.1.0"; sha256="0hby3sc7zflqnk8x7cbpy04mk3xf138xm5zrxlfckpimj40nzkkk"; depends=[data_table gdsfmt geometry MASS plot3D SNPRelate]; }; + EthSEQ = derive2 { name="EthSEQ"; version="2.1.1"; sha256="10i2cwrsgi6q5fq9ksjrhrdwg6hjjd284xsjdiwlfcbfa59390dc"; depends=[data_table gdsfmt geometry MASS plot3D SNPRelate]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.0"; sha256="08m7igh6n8haf8yi8ikrz6ih4agvsnx415kdx4cgjw4xilvgpgqm"; depends=[clinfun data_table plyr shiny VGAM]; }; EvCombR = derive2 { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; }; EvalEst = derive2 { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; }; EvaluationMeasures = derive2 { name="EvaluationMeasures"; version="1.1.0"; sha256="0b65y4rb650hhlgc18z0sm0danrrawqkazzdl9krl877djrgx87g"; depends=[]; }; Evapotranspiration = derive2 { name="Evapotranspiration"; version="1.11"; sha256="1zir62009fw4w4ixkyc5s9428krlh6bz8ir2vl11206xxf8rbkd4"; depends=[zoo]; }; - EventStudy = derive2 { name="EventStudy"; version="0.32"; sha256="1g142289my77zhqsgjb7q38izs1ipkisxw656n2xna6c64zv349a"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI purrr RColorBrewer readr rstudioapi scales shiny stringr testthat tidyquant]; }; + EventStudy = derive2 { name="EventStudy"; version="0.33"; sha256="1jyy0mhmykysv7qmmcr3anl2gm01swh19csxjkm1aanwdxc11835"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI openxlsx purrr RColorBrewer readr rstudioapi scales shiny stringr testthat tidyquant]; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; ExPosition = derive2 { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; }; @@ -1000,12 +1028,13 @@ in with self; { FCNN4R = derive2 { name="FCNN4R"; version="0.6.2"; sha256="089vq8kaag4j6xl3h9pb3ch8lfg0mmi96jgm4xhgr40rr0m3ijma"; depends=[Rcpp]; }; FD = derive2 { name="FD"; version="1.0-12"; sha256="0xdpciq14i8rh7v6mw174hip64r7mrzhx7gwri3vp9y7a1380sbi"; depends=[ade4 ape geometry vegan]; }; FDGcopulas = derive2 { name="FDGcopulas"; version="1.0"; sha256="1i86ns4hq74y0gnxfschshjlc6if3js0disjb4bwfizaclwbw3as"; depends=[numDeriv randtoolbox Rcpp]; }; + FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; FDboost = derive2 { name="FDboost"; version="0.3-0"; sha256="06cwd8534k3h7mk6w9z7fyq0gvb74w12gxh3njmy4m7hw8yzicc8"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; FENmlm = derive2 { name="FENmlm"; version="1.0"; sha256="0mq1qa72hsz3pyqjnbyzcc7shr08cq3hng1fz53mn9mvp11vb135"; depends=[MASS Matrix numDeriv]; }; FFD = derive2 { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; }; - FFTrees = derive2 { name="FFTrees"; version="1.3.3"; sha256="0vvrihgq2m08jpm4sbq9fpbwppvmcc2v9za7kl2l41n8as1n14gc"; depends=[circlize e1071 igraph progress randomForest rpart stringr yarrr]; }; + FFTrees = derive2 { name="FFTrees"; version="1.3.4"; sha256="06f1vjmypcdai8smac7acixc2zdah3la4lbwr8s3a0ksrj2590sk"; depends=[circlize e1071 igraph progress randomForest rpart stringr yarrr]; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; }; FGN = derive2 { name="FGN"; version="2.0-12"; sha256="0jxawb4wm1vcp0131mdnc0r24dw8sd29ih0fc2wh6ahy7mxzajqn"; depends=[akima ltsa]; }; FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; @@ -1014,7 +1043,6 @@ in with self; { FHtest = derive2 { name="FHtest"; version="1.3"; sha256="1cay1cl1x4lias55vxc14caznggdw6j8vgqgkxfmvldnvjfljsq1"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; FIACH = derive2 { name="FIACH"; version="0.1.2"; sha256="151lc5m8pb7l07kxljm32zy5kd7a4zr5vgsgwsx7ywhijh0r0585"; depends=[Rcpp RcppArmadillo RNiftyReg tkrplot]; }; - FIT = derive2 { name="FIT"; version="0.0.4"; sha256="150lwqxzznmga5dbrxi12pjva7pvc7nsahs8w5wvibkasndxwxj9"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-0"; sha256="021xmbavigg70m96xw1bvsdasi5yj2wmafgb6xw4b09fmyv9hvjp"; depends=[]; }; FKF = derive2 { name="FKF"; version="0.1.3"; sha256="01ibihca39zng4wrvhq8h28bmb2rnsjm21xy22b85kpn3mbnh7f1"; depends=[RUnit]; }; FLIM = derive2 { name="FLIM"; version="1.2"; sha256="180az4zwmfcglmvismyacmh7ri4qg8jvhlisqpway0z5z6fsda6r"; depends=[MASS zoo]; }; @@ -1030,6 +1058,7 @@ in with self; { FNN = derive2 { name="FNN"; version="1.1"; sha256="1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"; depends=[]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; FPDclustering = derive2 { name="FPDclustering"; version="1.2"; sha256="1qj1dddzcy2jx4903kmzzhcwfi13c2x9kva2n4rzqh5n560nvg57"; depends=[ThreeWay]; }; + FPV = derive2 { name="FPV"; version="0.5"; sha256="0pxa8lbcxw2hx2n0frkx0pdndlcfm7gnh9qay9q53cf5gqzzwvvc"; depends=[FuzzyNumbers FuzzyNumbers_Ext_2]; }; FRACTION = derive2 { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; }; FRAPO = derive2 { name="FRAPO"; version="0.4-1"; sha256="0mjcrplxr0cyybp5hzzwbq5j03w0f3iiiv1yk7mdqr5gb368dchq"; depends=[cccp Rglpk timeSeries]; }; FRB = derive2 { name="FRB"; version="1.8"; sha256="13rp4gqldx84mngrdv5fa9xamkng7b3kgy30ywykcx46gmrym6ps"; depends=[corpcor rrcov]; }; @@ -1039,11 +1068,13 @@ in with self; { FRESA_CAD = derive2 { name="FRESA.CAD"; version="2.2.1"; sha256="065iywjay4a06w97lg2z98qq0j60flq4srchyg7c2a3pjrwppqc2"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; FREddyPro = derive2 { name="FREddyPro"; version="1.0"; sha256="0h2rdydcx9pwjl1zxghzb5vqynrwdkscyq6c9adjgz4dngfwyzsw"; depends=[dismo ggplot2 lubridate raster RColorBrewer sp]; }; FRK = derive2 { name="FRK"; version="0.1.5"; sha256="01r7w2m9f6lr63hiv8sfg49jccyf5xk0fw7xipvwmq0daxl250y1"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime]; }; - FSA = derive2 { name="FSA"; version="0.8.14"; sha256="085xzghpk0j4d5678ka1bqxlgkp0hz62vi9gld4qap89fy954hrm"; depends=[car dplyr dunn_test epitools gplots lmtest plotrix plyr sciplot]; }; + FRegSigCom = derive2 { name="FRegSigCom"; version="0.1.0"; sha256="02lvgxxr12rfs4k7dg3rl249nbvfkqaywas3k6jhm378j3j8yaaf"; depends=[fda]; }; + FSA = derive2 { name="FSA"; version="0.8.16"; sha256="0vsaldpnz648mrhbix6688pqf4ayxkn3375cqjy8spk4kpwrpwpl"; depends=[car dplyr dunn_test epitools gplots lmtest plotrix plyr sciplot]; }; FSAdata = derive2 { name="FSAdata"; version="0.3.6"; sha256="0r4g3s4a7hizxj7zlp8wb5sldnx6kc99vak8ww715bhzpzq40qf8"; depends=[]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; FSTpackage = derive2 { name="FSTpackage"; version="0.1"; sha256="1fjqsl59fg4x9vkbv4b0qmfxlaa2q3rzpl40grv24yg6ixfagmdb"; depends=[CompQuadForm MASS Matrix mvtnorm SKAT]; }; FSelector = derive2 { name="FSelector"; version="0.21"; sha256="0qk54b4svihwcmfdp5k8pcvy60568zlg4z2qqiawr7h4inzmvrlk"; depends=[digest entropy randomForest RWeka]; }; + FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.1.8"; sha256="0qn916i0gcq7l4ym8yyl9dk0iwh6m4fkwcvvm60yvzbglv8dpqjc"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; FTICRMS = derive2 { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; }; FTRLProximal = derive2 { name="FTRLProximal"; version="0.3.0"; sha256="0wnlswvxiw7gvmn9yq1v8jixwspfbvcg3rklqcd0ib38d72ww7w0"; depends=[Matrix]; }; FUNLDA = derive2 { name="FUNLDA"; version="1.1"; sha256="1qqwpics63qab43mvpm275rk9iywawr4gap0qa832i6iy3jp1h3c"; depends=[Rcpp RcppArmadillo]; }; @@ -1051,11 +1082,11 @@ in with self; { FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; - FactoClass = derive2 { name="FactoClass"; version="1.1.4"; sha256="1svql9llnwwdpb2c9g3fx65wgmkvv0ksdrk1vrhw9pvwyk3yzbrn"; depends=[ade4 KernSmooth scatterplot3d xtable]; }; + FactoClass = derive2 { name="FactoClass"; version="1.1.6"; sha256="0wkz1kvpsl4z688y9qwp3hlycn66vbsl85s70wwv8ww12z3dwpcd"; depends=[ade4 KernSmooth scatterplot3d xtable]; }; FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.0"; sha256="10yim7xvzizr383hygs4s2f59ipbl4sj2i85g55zw7j5crangql3"; depends=[FactoMineR rmarkdown rrcov]; }; FactoMineR = derive2 { name="FactoMineR"; version="1.36"; sha256="1pin3frnls7bbng3fvl92248mf9nnv6d8wwkdzgj66m4rbxc7611"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; }; FactoRizationMachines = derive2 { name="FactoRizationMachines"; version="0.21"; sha256="0kd9q4nh01hh9ky9f2gx880cbhsipk5cl0173z8kn5vqag9ms4wj"; depends=[Matrix Rcpp]; }; - FactorsR = derive2 { name="FactorsR"; version="1.1"; sha256="06193gw4q9yvhmgzlv8w2xi9f418cjkn9jx72l41426wapjhygdy"; depends=[]; }; + FactorsR = derive2 { name="FactorsR"; version="1.2"; sha256="0y6r5ch0h0sag1xinvnjr7q4495naygvi5iiqq9bc51ijv228c0m"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="1.0.5"; sha256="1jqk80raqf3kxympkqfayzwwc61yipzh4cbklrb9kmay5ryg4gj9"; depends=[colourpicker FactoMineR shiny]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FamEvent = derive2 { name="FamEvent"; version="1.3"; sha256="0jf4ph9mskycyckyg9biy0h1zk5q6nvj8669zfh8nfnnn2yh3s48"; depends=[kinship2 MASS survival truncnorm]; }; @@ -1084,7 +1115,7 @@ in with self; { FinancialInstrument = derive2 { name="FinancialInstrument"; version="1.2.0"; sha256="0lx8gqmnapyizlg0qdcjy8xrkpbhj0f7nc95l86a6xy82hz62dzb"; depends=[quantmod TTR xts zoo]; }; FinancialMath = derive2 { name="FinancialMath"; version="0.1.1"; sha256="11nhphvd7bvbc7xfs85rib763r1mpvxmsj6hgzfib5aifib5k5js"; depends=[]; }; FindAllRoots = derive2 { name="FindAllRoots"; version="1.0"; sha256="0n4wfm21qj5zn06jqnzxa0w9mfn18dqi6hk1jjqa56dxqw1k7vw0"; depends=[]; }; - FindIt = derive2 { name="FindIt"; version="1.1"; sha256="16ply5a3zh9qzff6iv9kgbvz7y33j5fmpkf6ydfjfb4bw57v1xix"; depends=[arm ggplot2 glinternet glmnet igraph lars lmtest Matrix quadprog sandwich]; }; + FindIt = derive2 { name="FindIt"; version="1.1.1"; sha256="069n260dqzxw3d5xqlrzw4h6m3w8zkcd4zra9xzv0h561xr3b237"; depends=[arm ggplot2 glinternet glmnet igraph lars lmtest Matrix quadprog sandwich]; }; FindMinIC = derive2 { name="FindMinIC"; version="1.6"; sha256="0vlr56nw32msvz8bljrw82nzrnazncs6nz7zisidffm2v3najkar"; depends=[nlme sets]; }; FinePop = derive2 { name="FinePop"; version="1.4.0"; sha256="0bq6p95mpwbx38gly61n58jrqz6rymwdq6dwxghpx98f6isa83xh"; depends=[]; }; FisHiCal = derive2 { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; }; @@ -1102,14 +1133,14 @@ in with self; { ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; }; ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; }; ForecastFramework = derive2 { name="ForecastFramework"; version="0.9.0"; sha256="131h9f148wn89znzsnym43amlvf4s7jzg4f2p7ld9ns7727sf56q"; depends=[abind dplyr lubridate magrittr R6 reshape2]; }; - ForestTools = derive2 { name="ForestTools"; version="0.1.4"; sha256="0czvslmhz5syvd8h5zz6wl3nfp2dpyx3wf9x1d1hkgfgxkkl6f1y"; depends=[APfun imager raster rgdal rgeos sp TileManager]; }; + ForestTools = derive2 { name="ForestTools"; version="0.1.5"; sha256="0yjyc5i2jhagvwpzg420zhhygs966ncjn9aggh4gd4zdsi0nzqcx"; depends=[APfun imager raster rgeos sp TileManager]; }; FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; Formula = derive2 { name="Formula"; version="1.2-2"; sha256="0ad49bzip1zqmpj1d8jajwl4bd81fm3k6dq8p26x6mvlzc04dvwd"; depends=[]; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; FourScores = derive2 { name="FourScores"; version="1.0"; sha256="0d21mrl9bzsvhljv7ymiyck508smp66w9qivrb2rp0p803h9yibm"; depends=[]; }; FrF2 = derive2 { name="FrF2"; version="1.7-2"; sha256="1qjgx7zbnabbs4zq7hn3j1i1xyy4yjwnz7pn25kz9s3szqr1fk66"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; }; - FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1"; sha256="1ni10fdxinmclng0ck8287i6shis886y318a7b42pcfp00aiz8hh"; depends=[]; }; + FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.1"; sha256="0l015v99hzmiyic0klvq71ljk9f8ipr57ki7x4cjyz1gam9f84p5"; depends=[]; }; Fragman = derive2 { name="Fragman"; version="1.0.7"; sha256="0dh1gk2arj7r6zd5dhkmxpr7a1hd3pl8x5klmlsg4n6rwsx2p4v8"; depends=[]; }; Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; }; FreeSortR = derive2 { name="FreeSortR"; version="1.2"; sha256="01h29p9qhlkd2qmmmw23wh9lrsggvp1h3r2laqi2lln7d7srcwbj"; depends=[ellipse smacof vegan]; }; @@ -1120,12 +1151,12 @@ in with self; { Funclustering = derive2 { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; }; FunctionalNetworks = derive2 { name="FunctionalNetworks"; version="1.0.0"; sha256="071hjgiccbrf1gxrh7niw2w1p6vgc77qvrildi59xhk53qcwzqdp"; depends=[Biobase breastCancerVDX]; }; FusedPCA = derive2 { name="FusedPCA"; version="0.2"; sha256="0z4kvm6mn11fmc8w62aky2binjdcgrw4ij5vg65sb55da9s8d2kd"; depends=[genlasso]; }; - Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.0"; sha256="1n2m6p03bfip2fxfg8v4k43zgv7lcwwgv4myw2rj46djfwl2l9i7"; depends=[FuzzyNumbers MASS]; }; + Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.1"; sha256="13h6armh9g57zqxyjqk6mq81jlfqxqrg2sb5p9rrhslka5m01zis"; depends=[FuzzyNumbers]; }; FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.0"; sha256="02c08rzmmdd2l84jlzb0vck9m08afm7j599n0g09hffflcrb3fz7"; depends=[MASS]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-5"; sha256="1achmsc107b26d266q0vmip8vi3qaa5z0p183z2fjdm7zh9ch6ag"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-1"; sha256="15i0chp43y8xfyzkjrbljmdvgjjx9w1l5ayhvavk9y85pwb147b8"; depends=[]; }; - FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.1"; sha256="1wqp2ffqy5pl4m06ibj42x9hbcixsvdpx3703kn6jhqyif4i1r43"; depends=[FuzzyNumbers]; }; + FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.1"; sha256="08mhwzyksw0snxxcwn2kg62ya8smfvrls30znqhmnbkn5ijz0642"; depends=[plyr shiny]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.3"; sha256="0ry2cr5ds7kd7vk6ihdg68gqs2rv6qfmzlszr33a9ia5gsbi8b7b"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; @@ -1148,16 +1179,18 @@ in with self; { GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; GAparsimony = derive2 { name="GAparsimony"; version="0.9-1"; sha256="1j8r56pri7h0xr0fiihkwgccjb33n89lz8ah5p42bak7ay9fglkm"; depends=[foreach iterators]; }; GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; + GBJ = derive2 { name="GBJ"; version="0.4.0"; sha256="0b1612ijmbif7qbsnfnnkq1fsz0qmz4hbq14clpv59d3bsccs6jc"; depends=[BH mvtnorm Rcpp SKAT]; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; GCD = derive2 { name="GCD"; version="3.0.5"; sha256="1ami5xw5xx464pxr9y1z9bb3dvj46vx3wrbh19w4g7sk8yjvh5nl"; depends=[]; }; GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; - GCalignR = derive2 { name="GCalignR"; version="0.1.0"; sha256="0prky8n2j6xvq4srxcp08k4wlikg7hhj78mw7fjqbf01sl0zhwz5"; depends=[ggplot2 readr reshape2 stringr]; }; + GCalignR = derive2 { name="GCalignR"; version="1.0.0"; sha256="09qwxl39csrljkbfn3n0fxzypslhjzf10p61p0qmqkc9shh4yk6c"; depends=[ggplot2 pbapply readr reshape2 stringr]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="1.4"; sha256="1i5g7gzl3fkhwxqizqwrn8098s5lrr0mk17wmpyf92s1sy315cpv"; depends=[FactoMineR nleqslv nnet]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; GDINA = derive2 { name="GDINA"; version="1.4.2"; sha256="14686mkyxk7gjp0ivz1wkmry15qrf50fcwwza1j98791yjkqsbyf"; depends=[alabama data_table ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.1"; sha256="1akgl4j38x4qf3z9d6z7cgjd7x9f0k3lrzyrzgykqhrzmbh68z2m"; depends=[gee]; }; + GENEAclassify = derive2 { name="GENEAclassify"; version="1.4.5"; sha256="1hrsdpfk0iz0agi3rms43fk0yjv5ys10awqfxgwz9r9qfgczkh7j"; depends=[changepoint GENEAread MASS rpart signal]; }; GENEAread = derive2 { name="GENEAread"; version="1.1.1"; sha256="0c3d76yl8dqclk8zhhgrd6bv6b599vkpbyg3hjspb6npdw6zs6k8"; depends=[bitops]; }; GENLIB = derive2 { name="GENLIB"; version="1.0.4"; sha256="1gl8qsgm9iy57rlajgc47lfxah52jsg7lpj131a6813kj0c639l7"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; GEOmap = derive2 { name="GEOmap"; version="2.4-0"; sha256="0jhzsp5f427r652mnaw3zg0vv13jaz11bfbbxppmxvya6k2jimyg"; depends=[fields MBA RPMG splancs]; }; @@ -1180,7 +1213,7 @@ in with self; { GHap = derive2 { name="GHap"; version="1.2.2"; sha256="1qwv4llcixklr9d6lq4ljzbs8al80xnvqkcajnh8dbf3axmlmr5b"; depends=[bigmemory lme4 Matrix]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.5"; sha256="0mx4n4kf34343yiww80fw5yy0x624xsj71n8fr4dm0a2338pxq8v"; depends=[]; }; GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; - GJRM = derive2 { name="GJRM"; version="0.1-1"; sha256="04vk9442zdjy00pzjkzgvxnszbvk021klayjzlimi5pbrm7mlgc2"; depends=[copula gamlss_dist ggplot2 magic matrixStats mgcv mnormt psych Rmpfr scam survey survival trust VGAM VineCopula]; }; + GJRM = derive2 { name="GJRM"; version="0.1-2"; sha256="02s0s4kh9vxap5qyr2imr8zbfixkhiyrk7fg5fk7hjbs3ziy6q0s"; depends=[copula gamlss_dist ggplot2 magic matrixStats mgcv mnormt psych Rmpfr scam survey survival trust VGAM VineCopula]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.5"; sha256="0mr8qhccp8dndp43v8ym22f4djrjr8qcxbv61lwabk2462llwln6"; depends=[cluster]; }; GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; @@ -1205,6 +1238,7 @@ in with self; { GPFDA = derive2 { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; }; GPGame = derive2 { name="GPGame"; version="1.0.0"; sha256="1ln3smlhr0hz5nkbdfhrpvz6cn0jz21w8p0d3xlcv4szlmkx8lx6"; depends=[DiceDesign DiceKriging emoa GPareto KrigInv MASS mnormt mvtnorm Rcpp]; }; GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; }; + GPPFourier = derive2 { name="GPPFourier"; version="2.1"; sha256="1wlzpiqlg5zx3rv29l1ql3apcaykvk72zc0anwxr152qlk910l2q"; depends=[mFilter Tides]; }; GPareto = derive2 { name="GPareto"; version="1.1.0"; sha256="0y4jskrbsv7apc5blchnzgd2mfphvrpc03qgbgyvnzpc0yq18vmh"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud]; }; GPfit = derive2 { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.0"; sha256="14h9g2rg5yzw68hg2a3s2lp19ilq7dl1k3cjnd9k516b5gdm2izl"; depends=[deSolve rgl]; }; @@ -1225,8 +1259,8 @@ in with self; { GSED = derive2 { name="GSED"; version="1.5"; sha256="0r1fgwk1v11bwq83a64cgmxh5snw3mnaq4mlgi0h4n5f1yjgg5wj"; depends=[memoise rootSolve survival]; }; GSIF = derive2 { name="GSIF"; version="0.5-4"; sha256="1vh3dffi5hakk32rwaabw9k34wigd0n5bhzcyqhadl6fxjsaz6b6"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; - GSMX = derive2 { name="GSMX"; version="1.1"; sha256="06l6abhf4b6h8wkmwdylw4f4inflr8qxfd65pnnsjmk6lv6zpdgm"; depends=[MASS]; }; - GSODR = derive2 { name="GSODR"; version="1.0.5"; sha256="09q7d26y12d1mkxjf2zcbzjm3ddkj1spls53g01m842y1kwxnn2h"; depends=[curl data_table dplyr fields magrittr purrr R_utils readr rgdal sp]; }; + GSMX = derive2 { name="GSMX"; version="1.2"; sha256="0prnvhz5j0y77xywgc057vrnawzdjz9s4l08j60sg12p6gm1q2fj"; depends=[MASS]; }; + GSODR = derive2 { name="GSODR"; version="1.0.6"; sha256="0v2g5sssrf23v7369jh0ddja0yf0j6f4gblhf3iasnq2i8fnbxhl"; depends=[curl data_table dplyr fields magrittr purrr R_utils readr rgdal sp]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; GUIDE = derive2 { name="GUIDE"; version="1.2.3.1"; sha256="02chn2mzh6smmiv8rp00cq5rff18bqszazbk8svmvvlgn0a25pj4"; depends=[rpanel tkrplot]; }; @@ -1246,7 +1280,7 @@ in with self; { GameTheory = derive2 { name="GameTheory"; version="2.7"; sha256="0vb7sjia5s58gw9zpkzddps8knxvbrz7fbi3m6digl8bf5vwhxxw"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; Gammareg = derive2 { name="Gammareg"; version="1.0"; sha256="1a5wibnbd8jg0v8577n1x9kc358qpd4jz7l8h7r541sdpprm6wb0"; depends=[]; }; - GauPro = derive2 { name="GauPro"; version="0.2.0"; sha256="0fkkn03bs90sjynv5h9bby3n2v49vb5x25j9nxhi0gm0wxsqydb7"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; + GauPro = derive2 { name="GauPro"; version="0.2.2"; sha256="127agnhqbbavcf7sx0zq1c8ldh3w1d1iz5bpd1ixxkyaapmiq4qy"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-1"; sha256="1xjz22m4yn642m0bqa33w4m2rygpxjwg43c54lw168jck9zzgv1f"; depends=[nlme raster rgeos sp spatialEco spdep]; }; GenABEL = derive2 { name="GenABEL"; version="1.8-0"; sha256="0sd497qvik70iwv7wc8r50rhc5wx153pm8vif738wwqqp43chks3"; depends=[GenABEL_data MASS]; }; GenABEL_data = derive2 { name="GenABEL.data"; version="1.0.0"; sha256="0p66fb0gynjx3mnfvnlz45cbn6xf49gwx9mfyxf584xfcggxaa1c"; depends=[]; }; @@ -1274,14 +1308,15 @@ in with self; { GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; GeoGenetix = derive2 { name="GeoGenetix"; version="0.0.2"; sha256="0rrc8rdf6whpd830s2g9ybz82jcd0il9kkfrjh3xza3b86fasdvg"; depends=[RandomFields]; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; }; - GeoMongo = derive2 { name="GeoMongo"; version="1.0.0"; sha256="1kpc1nh7gnbfms6wsvrj278bqb3grgxsrpqzq9jyk3l36ybahn5r"; depends=[data_table geojsonR R6 reticulate]; }; + GeoMongo = derive2 { name="GeoMongo"; version="1.0.1"; sha256="19wim724sgmxx9rd5yvmqdml0hppb92b8qvpl5zqrlnzxzm0ih5x"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeoXp = derive2 { name="GeoXp"; version="1.6.2"; sha256="18wdmdwb79ipdjdii068dz9f55b5ldxn95g5q6jcxsqwp0wldvw8"; depends=[KernSmooth quantreg rgeos rgl robustbase spdep splancs]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; GerminaR = derive2 { name="GerminaR"; version="1.1"; sha256="1ijx2bd0fpki3pqm9grksc60f43qg9y5412mwd847xqqjpc1mxm4"; depends=[agricolae assertthat dplyr DT ggplot2 gsheet gtools magrittr readxl shiny shinydashboard tidyr]; }; - GetHFData = derive2 { name="GetHFData"; version="1.3"; sha256="036lv3gvrcj6b47dc1shhihgcjc3nnl4fnqjk3qphp7q02lfh0g7"; depends=[curl dplyr lubridate RCurl readr stringr]; }; + GetHFData = derive2 { name="GetHFData"; version="1.4"; sha256="0m9s65wyd0r37fn83dh5d2w4dr7x5z4sk9pgxbq9mcgz276i7anx"; depends=[curl dplyr lubridate RCurl readr stringr]; }; + GetLattesData = derive2 { name="GetLattesData"; version="0.5"; sha256="18kaqmgx019jfwp6mhdy29kiz4w54xnnywbsipbp621f7k2is6zd"; depends=[curl dplyr readr stringdist stringr XML]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; - GetTDData = derive2 { name="GetTDData"; version="1.2.5"; sha256="0ghi9iram9d67vs12hkw362qnvmk1lk72pjgmx118i4yxh5gvvw3"; depends=[curl RCurl readxl stringi stringr]; }; + GetTDData = derive2 { name="GetTDData"; version="1.3"; sha256="0x8hgpjk3ah5izr4da7xkazha5j737cq5y84qmjbsgaxn9jdmvj5"; depends=[bizdays curl RCurl readxl stringi stringr tidyr XML]; }; GetoptLong = derive2 { name="GetoptLong"; version="0.1.6"; sha256="1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"; depends=[GlobalOptions rjson]; }; GiANT = derive2 { name="GiANT"; version="1.2"; sha256="0h9jx2vpgpzlinf6v9mxj260r22nlqml8xnd2jknw36j5imim57w"; depends=[]; }; GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; }; @@ -1293,7 +1328,7 @@ in with self; { GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.0.12"; sha256="1abpc03cfvazbwj2sx6qgngs5pgpzysvxkana20hyvb4n7ws77f0"; depends=[]; }; - Gmedian = derive2 { name="Gmedian"; version="1.2.3"; sha256="0b2ijr9zlsp1287da3h9qm5cm17xk8zm8cdcj6d4kz0ivgg444py"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; + Gmedian = derive2 { name="Gmedian"; version="1.2.4"; sha256="0lr1hwprqy9mq5qyp83qqxj8dh5sy487xkqbv2y1qdinzj62pvcn"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; Gmisc = derive2 { name="Gmisc"; version="1.4.1"; sha256="1xdgmvzixc03qz34l57gy85w711iimmfqn6w20rr5b67m5m63drz"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-0"; sha256="17jd1dqwpki4mmzk695g25vvfwvkp4k7jhvw06dmdmn5j09hw373"; depends=[KernSmooth]; }; GofKmt = derive2 { name="GofKmt"; version="2.0"; sha256="0018ljzlj7nkf12g0sqa8iyq3j2bnj9la3fwblx9lbdn8nxgllhn"; depends=[Rsolnp]; }; @@ -1335,7 +1370,7 @@ in with self; { HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; HEAT = derive2 { name="HEAT"; version="1.2"; sha256="1qifqd06ifl0f5l44mkxapnkwhpm0b82yq6dhfw4f8yhb27wd0z2"; depends=[]; }; HEMDAG = derive2 { name="HEMDAG"; version="1.0.0"; sha256="0hgxhd8c87ngyh87vdzlmmbfllxjrmqr6ndh561hkxzmbiw1q655"; depends=[graph PerfMeas precrec preprocessCore RBGL]; }; - HGNChelper = derive2 { name="HGNChelper"; version="0.3.5"; sha256="0b2q99z22gafkicfkaxpzl79j2axrz60r9ch1smjivpk8sa22hyq"; depends=[]; }; + HGNChelper = derive2 { name="HGNChelper"; version="0.3.6"; sha256="1bm6zxwafbp65p6w4rk2y1bw7ig60br2mk75c4frdzqw3yw0zwxd"; depends=[]; }; HH = derive2 { name="HH"; version="3.1-34"; sha256="1srr195ha8n4va30impm12p2kamkl36whl8g10pl80hwgg20pbqk"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; HHG = derive2 { name="HHG"; version="2.1"; sha256="0930pgq0xzixj0rl6rkd1cd007zpa9krfdyaav8cbx8sgg5bfknp"; depends=[]; }; HI = derive2 { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; }; @@ -1382,7 +1417,7 @@ in with self; { HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.5.8"; sha256="0xbcchmzii0jv0ygr91n72r39j1axraxd2i607b56v4yd5d8sy4k"; depends=[mice Rcpp]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; - HelpersMG = derive2 { name="HelpersMG"; version="1.9"; sha256="10icxks0b2sq7s2g7m4vs8857mlw5hkpnmphy7dfd1r8cbf7y7sh"; depends=[coda]; }; + HelpersMG = derive2 { name="HelpersMG"; version="2.0"; sha256="0gp5mmb7w4s6mr0cnjlx0qrdplgq6sc7cvh912kdqfjz5ayr297i"; depends=[coda]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.0"; sha256="0ibb2nkjk1d59gc1ljihihsjai3jp4jsbbariv05h1z26pgpc9p3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; HiCblock = derive2 { name="HiCblock"; version="1.0"; sha256="09k0iiqg8acw2v36j89cjca5jdsfdnbj3z00ynfgaxlgphbigrl1"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; }; HiCfeat = derive2 { name="HiCfeat"; version="1.2"; sha256="01b8isvn4my41n3608k80d38vgd3waq7rxsx1v4p0rl1f3pxn7dn"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; @@ -1395,7 +1430,7 @@ in with self; { HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-8"; sha256="13db9qxcky91nck49w6iz98yx3c5rb70dc993gdmnwhzzrl92lfp"; depends=[]; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; }; HighDimOut = derive2 { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; }; - HistDAWass = derive2 { name="HistDAWass"; version="0.1.6"; sha256="0i43zki95m47nm3yy7m7s66nvpmx6vl3df2bxkpyihc2xsqrsf3l"; depends=[class colorspace FactoMineR ggplot2 histogram]; }; + HistDAWass = derive2 { name="HistDAWass"; version="0.1.7"; sha256="16mn6z8gvg9x5flia7kl5qi5nbnd9fr7bfggz58vpfqwd8xl9g4n"; depends=[class colorspace FactoMineR ggplot2 histogram]; }; HistData = derive2 { name="HistData"; version="0.8-2"; sha256="0qd3a1v3xg39nwqfw63k6210vqkpknq0j3r36sy1910hn0nr83fa"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.3.42"; sha256="09h061511pk7iy1k9gb3ifa5q6gd17ix9sn2fshl6gp5sxnysn4f"; depends=[jpeg plyr png RColorBrewer rgl tkrgl]; }; @@ -1407,6 +1442,7 @@ in with self; { HotDeckImputation = derive2 { name="HotDeckImputation"; version="1.1.0"; sha256="1mqfn6yw5846ynrcgzka0m6ikfppa5civjkhj42rhp2v2xk25li7"; depends=[Rglpk]; }; Hotelling = derive2 { name="Hotelling"; version="1.0-4"; sha256="1ncq74ifdn1ha6wbkvygbwi2n0nwaj1lifyqp36sy0hql3ahrac9"; depends=[corpcor]; }; HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; }; + HybridFS = derive2 { name="HybridFS"; version="0.1.1"; sha256="09kb9zy70i2z7qd9ilkv3g4sb8giyh5mqsz3cgyd3dph7d9y0979"; depends=[caTools FSelector InformationValue ROCR woeBinning]; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; }; HydeNet = derive2 { name="HydeNet"; version="0.10.5"; sha256="00h7lj347nag5m5nfyv1hgaml77kqlcxrl704mq6791fcjdchgp1"; depends=[checkmate DiagrammeR dplyr graph gRbase magrittr nnet pixiedust plyr rjags stringr]; }; HydroMe = derive2 { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; }; @@ -1425,10 +1461,10 @@ in with self; { IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; ICAOD = derive2 { name="ICAOD"; version="0.9.2"; sha256="12fkcc2ii3652n8ihzm29f9gip790wdmil7c1bzd5ma4l959w7hy"; depends=[nloptr Rcpp RcppEigen Rsolnp]; }; - ICBayes = derive2 { name="ICBayes"; version="1.0"; sha256="0z0z74yslhfjbh7188hzyxhwb7kn9raa0xsrr6n592ridpkhaih4"; depends=[HI survival]; }; + ICBayes = derive2 { name="ICBayes"; version="1.1"; sha256="1bmxba3bv9szzxvjf1blwxwdhw87h7s04cfn63c1gqpnpwsmr03y"; depends=[coda HI survival]; }; ICC = derive2 { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; }; ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; }; - ICCbin = derive2 { name="ICCbin"; version="1.0"; sha256="1ybhxk5bvgfsz45r1kbb8b82qwjb8a88q11x5c4dbdk85fkxg3w9"; depends=[]; }; + ICCbin = derive2 { name="ICCbin"; version="1.1"; sha256="0jlq1rlpgw52kxaj02mh0jlvvxw4f1bj8094p7f5hqdjhjc53ynf"; depends=[]; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; }; ICEbox = derive2 { name="ICEbox"; version="1.1.2"; sha256="170gg2fg9307yc2b25lsj8d1zla0frjxl47qh0njlqlrpi8jmm7i"; depends=[sfsmisc]; }; ICEinfer = derive2 { name="ICEinfer"; version="1.0-1"; sha256="0gjgr1r33w6d5ra0njh15lj46lw6v751yl8iqrdf4a5pazs7w3lm"; depends=[lattice]; }; @@ -1441,6 +1477,7 @@ in with self; { ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; ICtest = derive2 { name="ICtest"; version="0.3"; sha256="0g4h6gkz6zp28a1hvrvm89wckx6sg5fqzy0flb97a6lh9xpmb83g"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey]; }; + IDCard = derive2 { name="IDCard"; version="0.1.0"; sha256="1hc319avacxprg8vdp218dbkhzi6fn5ahd2rr1m7qwz4gnhwl95q"; depends=[]; }; IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; }; IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.2.2"; sha256="0pfvdy82i5w6zrda2022m1v22dv2qsgcj1y7f8hqmaqvqgczizfk"; depends=[]; }; @@ -1448,6 +1485,7 @@ in with self; { IDmining = derive2 { name="IDmining"; version="1.0.2"; sha256="1ffjwcf3j2v950ksshajwld0h2ld71ij2i76vncl2qmwdlmx0ip3"; depends=[data_table doParallel foreach]; }; IFP = derive2 { name="IFP"; version="0.2.1"; sha256="06zyadcr8p6q0c5h9n29yl02ixysdj6lfbn9hfir0bk9hyv9yfyr"; depends=[coda haplo_stats]; }; IGM_MEA = derive2 { name="IGM.MEA"; version="0.3.5"; sha256="09k5di7bqlqi2m3jn39ahnf7x96wx1h06bw0ah6pdszwd97yy33i"; depends=[emdist ggplot2 gridExtra gtools lattice plyr reshape2]; }; + IGP = derive2 { name="IGP"; version="0.1.0"; sha256="0xv89gmyfgnq5kzcmjbp5nx9zbr3gbdzkvffp99bxbkvf759m255"; depends=[PythonInR R6]; }; IHSEP = derive2 { name="IHSEP"; version="0.1"; sha256="1djc5509b5iyi6y0i36h77l6sq1h0w721v2isxqldcqk3gb0bx11"; depends=[lpint Rcpp]; }; ILS = derive2 { name="ILS"; version="0.1.0"; sha256="18phs1q28mpwvwnzn0hgjxy978f7n4c3p94jxjp0sy3as67hqphp"; depends=[depthTools fda_usc MASS multcomp]; }; IM = derive2 { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[bmp jpeg png]; }; @@ -1477,7 +1515,7 @@ in with self; { ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; ISDA_R = derive2 { name="ISDA.R"; version="1.0"; sha256="0w6p2iy6s7fy8pw2cf4b5zhqcgjjwd5bkax1aqflaaj4ppmfx64v"; depends=[scatterplot3d]; }; ISLR = derive2 { name="ISLR"; version="1.1"; sha256="1w6k90mbzrx1756rvx7b3y22ypgkzl9p7mjjdlzs8i5g1yz8gzqv"; depends=[]; }; - ISOcodes = derive2 { name="ISOcodes"; version="2016.12.09"; sha256="1xsazjipx468hyqivdkskcqiipmysdzzrswh4yh6p41qbf1ahp6a"; depends=[]; }; + ISOcodes = derive2 { name="ISOcodes"; version="2017.09.20"; sha256="0yzn0qh5qh863zqr3vdsspr9diy2whx92gqm84d2brxm195sd1x8"; depends=[]; }; ISOpureR = derive2 { name="ISOpureR"; version="1.0.21"; sha256="093wvnh7fv9shvssgl8slfg394f0v0jazj4jpihhaqkfchq1vryy"; depends=[futile_logger Rcpp RcppEigen]; }; ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; }; @@ -1503,6 +1541,7 @@ in with self; { InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; InferenceSMR = derive2 { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; + Inflation = derive2 { name="Inflation"; version="0.1.0"; sha256="0ikhsslbg32kr9vcaxq8qwaa7ahiwvq91xwv53550wci2vyzmybp"; depends=[seasonal]; }; InfoTrad = derive2 { name="InfoTrad"; version="1.2"; sha256="0blfn59w73hjga15sw8plwvn6yq9fj95nxwp018mp1harl8wa5db"; depends=[nloptr]; }; Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; @@ -1523,11 +1562,10 @@ in with self; { InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; Interpol = derive2 { name="Interpol"; version="1.3.1"; sha256="1598lnnrcxihxysdljphqxig15fd8z7linw9byjmqypwcpk6r5jn"; depends=[]; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; }; - InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.0"; sha256="0b73xxkpz2rj0i2g5bqj8zsybcz0850f4vhdiryqn9933zi347ap"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; + InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.1"; sha256="00nhfz1hs2j1pqhwgw5c337kl1azr3vmlcd1krnl4fgs5yz6ksyq"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.6-1"; sha256="16qlskxszpi24qsdl821n72pzdvmf1gg7lnlwyhyzhzzkh9az1pd"; depends=[glmnet mboost]; }; InvasionCorrection = derive2 { name="InvasionCorrection"; version="0.1"; sha256="1wwx2kssjysl1lraac36pvxq34vg8qm0vwi861rs1iipfc35i84j"; depends=[lattice]; }; - Inventorymodel = derive2 { name="Inventorymodel"; version="1.0.4"; sha256="1mlvdfhyr27sgap7jgccy79gg7dksplp2jirijn9i289mqvy12c9"; depends=[e1071 GameTheoryAllocation]; }; - InventorymodelPackage = derive2 { name="InventorymodelPackage"; version="1.0.2"; sha256="1w35idsagl9v93ci3qmal3xbf11sy6h1k7xnv25c59ivfnpjpkva"; depends=[e1071]; }; + Inventorymodel = derive2 { name="Inventorymodel"; version="1.0.5"; sha256="16aqc8202k84pwbss6g2cw7lvykjjjfdg62jg9r82skjf7zzprpg"; depends=[e1071 GameTheoryAllocation]; }; IrishDirectorates = derive2 { name="IrishDirectorates"; version="0.2.0"; sha256="1m3c3dj4729chk1n3k7awvi1jdfnds2w36vm268azg53j6c7l4b6"; depends=[]; }; IsingFit = derive2 { name="IsingFit"; version="0.3.1"; sha256="1prdzzp15klkdy72379bjksdgxr15nk16pqm35w95341cddxchc7"; depends=[glmnet Matrix qgraph]; }; IsingSampler = derive2 { name="IsingSampler"; version="0.2"; sha256="16vwb5pcqjvvsk9wsgj10mzhgh72iz1q6n8nmkva6y1l7xv54c8w"; depends=[magrittr nnet plyr Rcpp]; }; @@ -1535,7 +1573,7 @@ in with self; { IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="1.0.3"; sha256="1cnkzc29k0inz6kdn77l0ymzjgf1hid8jza7nla4ym2s0gidgdyf"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="0.16"; sha256="1g4slgafi1wbiayhy0b51kixbwrdfw14pcvwvh9xbbn6rqnk1wci"; depends=[MASS]; }; + IsoplotR = derive2 { name="IsoplotR"; version="0.17"; sha256="02sd9qvab4lbb5dw9lvcv0l45rfv4z12irlsy83kr2wj0vkfxam7"; depends=[MASS]; }; IsoriX = derive2 { name="IsoriX"; version="0.7"; sha256="0b94s94axrqgv3dm9dbkdnh6imlzn245f2pi7wbj99nqhwa47ynb"; depends=[latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; JADE = derive2 { name="JADE"; version="2.0-0"; sha256="15bcq6r2iargxkb0pdbqkwrrn2rs7hc3y5fxjm5mb377513sdz5j"; depends=[clue]; }; @@ -1544,16 +1582,16 @@ in with self; { JBTools = derive2 { name="JBTools"; version="0.7.2.9"; sha256="0bynqn3daqgmi3l9asy34mfwyfjkn35k465dfqqi3xwx6cbzlg5k"; depends=[colorspace foreach gplots plotrix]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3"; sha256="1351iq547ln06nklrgx192dqlfnn03hkwj3hrliqzfbmsls098qc"; depends=[igraph]; }; - JGR = derive2 { name="JGR"; version="1.7-16"; sha256="0iv659mjsv7apzpzvmq23w514h6yq50hi70ym7jrv948qrzh64pg"; depends=[iplots JavaGD rJava]; }; + JGR = derive2 { name="JGR"; version="1.8-4"; sha256="0zfjfqlfrsz4wjdq78zasvgd3ldgcx20h16bbar1l7wv843j71ym"; depends=[JavaGD rJava]; }; JM = derive2 { name="JM"; version="1.4-7"; sha256="1ajdmabifzg4jp74ghas5wf3vp4x2vnc6sh811n44a1ni727sb2n"; depends=[MASS nlme survival]; }; - JMbayes = derive2 { name="JMbayes"; version="0.8-0"; sha256="1kay6na8mb7k2r4alpzm2lb8phjqr3a05qfpv4ydd16rbjrlfbph"; depends=[MASS nlme survival]; }; + JMbayes = derive2 { name="JMbayes"; version="0.8-67"; sha256="02gcpbn3nw1bfrsdybb17wrs4bwp2kzg22m2k6080b4gbrhqspi4"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; JMdesign = derive2 { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; }; JOP = derive2 { name="JOP"; version="3.6"; sha256="1kpb1dy2vm4jgzd3h0qgdw53nfp2qi74hgq5l5inxx4aayncclk7"; depends=[dglm Rsolnp]; }; JOUSBoost = derive2 { name="JOUSBoost"; version="2.1.0"; sha256="0f3rr7aw20nvmlpqrq3wzgmr55lqdqhk3wphpqq7msgvaf1zrcl7"; depends=[doParallel foreach Rcpp rpart]; }; JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; }; JPSurv = derive2 { name="JPSurv"; version="1.0.1"; sha256="11hfji0nyfmw1d7y2cijpp7ivlv5s9k8g771kmgwy14wflkyf7g2"; depends=[]; }; JRF = derive2 { name="JRF"; version="0.1-4"; sha256="1xpvscn9iawwa0vfh3kfwzdni436bf42nvm18b8abh033ljvqpij"; depends=[]; }; - JSM = derive2 { name="JSM"; version="0.1.1"; sha256="0ggqf55fn1zjn3d5nmizi4ywj5h6qfisp76ld95527xw2lkrv011"; depends=[nlme Rcpp RcppEigen statmod survival]; }; + JSM = derive2 { name="JSM"; version="0.1.2"; sha256="18h3jhfg5ch9312aidpbs0fz5rd54alv4kjhvkchddhp3alyhp82"; depends=[nlme Rcpp RcppEigen statmod survival]; }; JWileymisc = derive2 { name="JWileymisc"; version="0.2.1"; sha256="0cli204f1b5hj3qz62fycww12a6dv7xxxszkxgrxirw6mpdf858c"; depends=[cowplot data_table devtools foreach ggplot2 Hmisc lavaan MASS mgcv mice multcompView plyr]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.2-2"; sha256="1q6wqxlhslip14544px1aq446m77a8s0chvhpc19im014w4g930v"; depends=[Rcpp]; }; JavaGD = derive2 { name="JavaGD"; version="0.6-1"; sha256="13n6xzbbjgd0bpwv2xgm3dlscg87wh32q6fcq50kk6byp6yv05sc"; depends=[]; }; @@ -1564,6 +1602,7 @@ in with self; { JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; JointRegBC = derive2 { name="JointRegBC"; version="0.1.1"; sha256="0w7ygs3pvlqkkb2x20kv20kda3gz7cn6zgrkg30nhjxp318d76ab"; depends=[MASS nlme survival]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; + JuliaCall = derive2 { name="JuliaCall"; version="0.7.3"; sha256="00kj1mwsgs5fj9s5qipbh81dmb908610ajng1k1yxkkrnc4nxqpk"; depends=[inline]; }; JumpTest = derive2 { name="JumpTest"; version="0.0.1"; sha256="1d5zmjwmajzdg5d1ws40zchx9wiaav01fby1v3irym2mx30jgbqn"; depends=[MASS Rcpp RcppEigen]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KATforDCEMRI = derive2 { name="KATforDCEMRI"; version="0.740"; sha256="1k8fihd9m26k14rvc5d5x0d9xc3mh8d49hs64p55np1acqfhg2sy"; depends=[locfit matlab R_matlab]; }; @@ -1572,6 +1611,7 @@ in with self; { KFAS = derive2 { name="KFAS"; version="1.2.9"; sha256="04iq4zyy98rqvv7q4f3ypg0bmdawmwa3lwm9agbrsaiz8v89cqhk"; depends=[]; }; KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; + KMgene = derive2 { name="KMgene"; version="1.0"; sha256="0fyi594djnz6phhw507bvscyi7qwskch5ykwrc7w0npxxjyryp2h"; depends=[CompQuadForm coxme kinship2 MASS mgcv nlme]; }; KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; KODAMA = derive2 { name="KODAMA"; version="1.4"; sha256="0qzpgj6ljzd8n8vgmf53pmblsmypl86j7njd3pz0d370bxfchsqj"; depends=[Rcpp RcppArmadillo]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.1"; sha256="0n07wrpmmvxflxpmhkp3gm40xz2w4j0l8dsljhmfiyxcf5y7kq2g"; depends=[pheatmap]; }; @@ -1592,7 +1632,7 @@ in with self; { Kmisc = derive2 { name="Kmisc"; version="0.5.0"; sha256="0pbj3gf0bxkzczl6k4vgnxdss2wmsffqvcf73zjwvzvr8ibi5d95"; depends=[data_table knitr lattice markdown Rcpp]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; Knoema = derive2 { name="Knoema"; version="0.1.7"; sha256="1f9sndva2pfv4r8g8dspywg8rs1vzlb8adf5zdc5gz8hl03b3dgr"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; - KnowBR = derive2 { name="KnowBR"; version="1.2"; sha256="1d2rzggj3jp8r748mrvk4c692xkmbim5avxjy30qzn3wmy15r479"; depends=[]; }; + KnowBR = derive2 { name="KnowBR"; version="1.3"; sha256="1083kficxc716sxzxj93arzx97bzcfm9fim3vkyvx9m9q26m3axl"; depends=[fossil plotrix sp splancs vegan]; }; KoNLP = derive2 { name="KoNLP"; version="0.80.1"; sha256="1chj8kv1l405dm0jcsxjjjxx395z05sfxbcc5vxnpbydx7lxa6zy"; depends=[devtools hash rJava RSQLite Sejong stringr tau]; }; KoulMde = derive2 { name="KoulMde"; version="3.0.0"; sha256="01mczlrdrfwdp2cj10kdqay3qpg8xf2v7vym62pll9l8n595snrl"; depends=[Rcpp]; }; Kpart = derive2 { name="Kpart"; version="1.2.0"; sha256="14c6ngc37xpxy5pd5jishaqz6aahky32p0x5bfsn5zirdahlphsa"; depends=[leaps]; }; @@ -1621,7 +1661,7 @@ in with self; { LEAPFrOG = derive2 { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; }; LEGIT = derive2 { name="LEGIT"; version="1.1.1"; sha256="108bxw98z0hgm4nnxvn54c5npm48qsif7y91dqsjx69p6azckqmh"; depends=[doSNOW foreach formula_tools iterators pROC snow]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0"; sha256="11vy6gg2x98s1y8a5ns9vcd61gw8ax1lhn4lvicdjbd1lg18nm83"; depends=[]; }; - LGEWIS = derive2 { name="LGEWIS"; version="0.2"; sha256="0aqvj6vphg33jfyfkj0zkdbp60a94jlc1vcsba2nyywc54qm9wjh"; depends=[CompQuadForm geeM pls SKAT]; }; + LGEWIS = derive2 { name="LGEWIS"; version="1.1"; sha256="1i52vp0ghjzmyh4r8h6jpyij7x4skw99xvw017b56m8fg64zy70r"; depends=[CompQuadForm geeM mvtnorm SKAT]; }; LGRF = derive2 { name="LGRF"; version="1.0"; sha256="1kdx6y55aa9n6v43zfz6jk8amvvxbx79sqm1jx4ihgkpgcdglan7"; depends=[CompQuadForm geepack SKAT]; }; LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; }; LICurvature = derive2 { name="LICurvature"; version="0.1.1"; sha256="09hqar4kvksd816ya6jg349r0v6z2m2109hq6j4k1d2vchab4lni"; depends=[MASS]; }; @@ -1632,6 +1672,7 @@ in with self; { LLSR = derive2 { name="LLSR"; version="0.0.2.0"; sha256="0nxp1sfnhgf0iqfhwqvr7a0mvs3swsj2l0shcyrb3zliyd23g5ax"; depends=[digest ggtern rootSolve svDialogs XLConnect]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; }; LMest = derive2 { name="LMest"; version="2.4"; sha256="1ag3w0789qfr0ypbkcwy81j61mmf0nwriiw22w7gqjn1ripx94kv"; depends=[MASS MultiLCIRT]; }; + LMfilteR = derive2 { name="LMfilteR"; version="0.1.0"; sha256="1sn5ag59zfbq8birvb84zwksy0z0qiqc4sm66ixvmfrxhfikan9l"; depends=[MASS]; }; LNIRT = derive2 { name="LNIRT"; version="0.2.0"; sha256="02gaqn2pixry6qgybwszsv60pk6hzdd51axchkq3ma3gb6biw4fv"; depends=[MASS]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; LOGIT = derive2 { name="LOGIT"; version="1.3"; sha256="1nx9ycrys0p08xr1n7bqgn47k5wz1zbp6w5pwsqk5c6f6did2rs1"; depends=[caret e1071 ggplot2 MASS pROC reshape]; }; @@ -1662,7 +1703,7 @@ in with self; { LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.1"; sha256="1inq88yqm1155shx81lsmjvc0snnid0ibim991g46yibf3jpcyzf"; depends=[]; }; LaF = derive2 { name="LaF"; version="0.6.3"; sha256="0mp1g8pikmkahxgshgs4a7iryxzzcxhxdzvdn60s6m9h1addvhww"; depends=[Rcpp]; }; - LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.0"; sha256="0qf818dgyp1sgs6j5zqsj1wld5hychv1qxr6gdk3s0nbv72y7wsw"; depends=[data_table maptools rgdal rgeos sp spdep]; }; + LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.1"; sha256="0ic6rm47iqkrlds7cshfcd0vjpgd7hldlicjq1wzxx0p3fbbnqjm"; depends=[data_table maptools rgdal rgeos sp spdep]; }; Lahman = derive2 { name="Lahman"; version="6.0-0"; sha256="1616iaa28z6wrxcvvmnic5awj33b7km9yxnn8bnll9yw99ks6qk6"; depends=[dplyr]; }; LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; @@ -1714,19 +1755,19 @@ in with self; { LoopAnalyst = derive2 { name="LoopAnalyst"; version="1.2-4"; sha256="02p46agsdbvw6dpgzahq9hfmy184jrkwa1hhnrcbrsmm54n3m2bx"; depends=[nlme]; }; LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; }; LowRankQP = derive2 { name="LowRankQP"; version="1.0.2"; sha256="0is7v4cy4w1g3wn4wa32iqv4awd1nwvfcb71b3yk5wj59lpm8gs3"; depends=[]; }; - LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.0"; sha256="0dqh1cg49w75fc6qmv2sdym5jsdnsgkwv621g3wmr8m3i81m49v6"; depends=[Rcpp RSQLite]; }; - LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.0"; sha256="1a74hjamh6sldzp65s0fm7d2wq1f37j822a7whikcpwsdj3za8vm"; depends=[Rcpp RSQLite]; }; + LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; + LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; LumReader = derive2 { name="LumReader"; version="0.1.0"; sha256="1h2r3c9xkwlnaicn65085bdx7y86ha2fpd5mxirqax5lm6d8lirc"; depends=[gridExtra lattice plotly shiny]; }; Luminescence = derive2 { name="Luminescence"; version="0.7.5"; sha256="07v78diyjvbymwidpa9f5bykaafczv0f88f6r926mk949sj1ici4"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm raster Rcpp RcppArmadillo readxl shape XML zoo]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; M4comp = derive2 { name="M4comp"; version="0.0.1"; sha256="1lxm6qcbdp7i00vxbikhyl7pdxnz4czar10kh9xm0qwy8sl8lxg2"; depends=[]; }; MADPop = derive2 { name="MADPop"; version="1.1"; sha256="1w2jbiki6d14y32p8a50b8g53m1iva2kgik14yg27z5hx1rwwq97"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; - MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="1.0.0"; sha256="1933dxjz0scw4arjlx606kr4b3czvl4i0blg4b212pycf8p7jyfb"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; + MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.0"; sha256="0vvzjqjhxnjxj3askm708bl07ph4zs9jykpw4yg5dsysy58cjl0z"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="1.1.2"; sha256="1d552k2n110a6rvvf2ld8anravp3xgh17irj6kb0nxzcjy30vprg"; depends=[MASS miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; - MALDIquant = derive2 { name="MALDIquant"; version="1.16.2"; sha256="0z5srzsfgsgi4bssr4chls4ry6d18y2g9143znqmraylppwrrqzr"; depends=[]; }; - MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.10"; sha256="1h1lvmw3233wgy1wvpa6n5q5j6z27hg3k31rq4a7c53w8g1bsmi3"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; - MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.0"; sha256="1di9l80pk0pp9r2437rq79ad05kaxrd2pvl0bliw63vr4g7vcnha"; depends=[lattice MALDIquant robustbase signal wmtsa]; }; - MAMS = derive2 { name="MAMS"; version="1.01"; sha256="0vm1pnh5bcggsip4cpbfif2j2glvbsscpnpjsycbd2y0m05asccz"; depends=[mvtnorm]; }; + MALDIquant = derive2 { name="MALDIquant"; version="1.16.4"; sha256="1pmhsfvd45a44xdiml4zx3zd5fhygqyziqvygahkk9yibnyhv4cv"; depends=[]; }; + MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.11"; sha256="11akflnz4d3vbal1zqyv58n8dwggnix2lzd1r1kkvwja6izb5z08"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; + MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.1"; sha256="1y2nr65cvqkvzzjsr3lmpk58lqd5rqvmzjdakhwhw4s6ymggd9hf"; depends=[lattice MALDIquant robustbase signal wmtsa]; }; + MAMS = derive2 { name="MAMS"; version="1.2"; sha256="19w6ydsbr60p1cmizhhmsajzasg76r23x29qcaa7mibcb5gh1yzs"; depends=[mvtnorm]; }; MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.1.2"; sha256="14vs6a4kh6w3qjsphid4czkzg1456igv4q0laxi4wfm8pb1j3aym"; depends=[ellipse magic MASS Matrix plotrix plyr]; }; @@ -1749,17 +1790,17 @@ in with self; { MBA = derive2 { name="MBA"; version="0.0-9"; sha256="06kmrdkhwwvr3kd5w8ws6r528hhpvbhixyj98lv36kkwlx14x06g"; depends=[BH]; }; MBC = derive2 { name="MBC"; version="0.10-2"; sha256="0c40k3m9z9cqk3778hwyy0i56qnsvw1dwpa6p9v097fbpacfsrg2"; depends=[energy Matrix]; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; - MBESS = derive2 { name="MBESS"; version="4.3.0"; sha256="055h4wppp4dyxa152hdg6as5ckxzvjjfb3k8n72w9jmmrk49vbbg"; depends=[boot gsl lavaan MASS mnormt nlme OpenMx sem semTools]; }; - MBHdesign = derive2 { name="MBHdesign"; version="1.0.70"; sha256="1diprak06v4jkivnf2bb74v9flm439034n62pfqg446vymxjkzh9"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; + MBESS = derive2 { name="MBESS"; version="4.4.0"; sha256="0qr5p5znwfq8j7ixdqyd45hdvjkk6nnd1s52ixzzmzv888bafflg"; depends=[boot gsl lavaan MASS mnormt nlme OpenMx sem semTools]; }; + MBHdesign = derive2 { name="MBHdesign"; version="1.0.76"; sha256="04nrfgi8l4hn1shzvzf389hgdd7d5psxhvplk0qn5x99ya8ldr7l"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; MBSGS = derive2 { name="MBSGS"; version="1.1.0"; sha256="1h5vhmpgrqza12j7ivhwgd5wyb7kkb8mjbxl5w756vyid8g03flz"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; }; MBTAr = derive2 { name="MBTAr"; version="1.0.1"; sha256="0zak19pdk0wwkhl4kj1jbwx0qmqcgpmmqv3vk0wg8nwgf1l65idy"; depends=[jsonlite]; }; MBmca = derive2 { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[chipPCR robustbase]; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; }; MCAvariants = derive2 { name="MCAvariants"; version="2.0"; sha256="0akff64v49d5r0wvspal0pz17jhz1ry4vdmj47m28gzjj69zcab0"; depends=[]; }; - MCDA = derive2 { name="MCDA"; version="0.0.16"; sha256="1yxcpvapn9dv802z3fm0sfgf8lkpsniwb41qnb8lbvmqnyzmkqhw"; depends=[glpkAPI RColorBrewer Rglpk]; }; + MCDA = derive2 { name="MCDA"; version="0.0.17"; sha256="1j9lahacdhvcvj7h32yb9fimlwfcl2q8jc7dlvnsc95wai43khfr"; depends=[combinat glpkAPI RColorBrewer Rglpk]; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; }; - MCI = derive2 { name="MCI"; version="1.3.1"; sha256="1dy7awqwxzpijx0x49ma28iialrdcwdcvc1qznlr9znml9xmz2br"; depends=[]; }; + MCI = derive2 { name="MCI"; version="1.3.2"; sha256="1qmvxpxhdzzlsdgi8gv5m3vknshvalsac38mh00v4v5sqpw4zc7l"; depends=[]; }; MCL = derive2 { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; MCMC_OTU = derive2 { name="MCMC.OTU"; version="1.0.10"; sha256="15k3y4bm4cxjb6r30afpw9gksflsxigzb17zwm1ipygq0d0h0zkg"; depends=[coda ggplot2 MCMCglmm]; }; MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.3"; sha256="0b9n793spljmsb58jp41vnl9c753xqaw1g4wbi4ax348cvi09jk8"; depends=[coda ggplot2 MCMCglmm]; }; @@ -1792,6 +1833,7 @@ in with self; { MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; MFKnockoffs = derive2 { name="MFKnockoffs"; version="0.9"; sha256="16f1kdaqczjlv5cx0nv9fybvjwf22yaj3f4blkgm7mf9h78cyz05"; depends=[corpcor Matrix matrixcalc scs]; }; MFPCA = derive2 { name="MFPCA"; version="1.1"; sha256="1nbm8j9g36jqbalja5zcgkiy03i0pmr75hiqnhigxyy4dnp0wj4a"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; + MFT = derive2 { name="MFT"; version="1.3"; sha256="029apjg1fqrqfg98jczbxfy267m3f68qxvxqjzbsw1xisq4j7wc0"; depends=[]; }; MGGM = derive2 { name="MGGM"; version="1.0"; sha256="0j9wyshwxd7zqb60avb7dmfgnrzv2nyn983bw0g5997zixz0w6mp"; depends=[]; }; MGL = derive2 { name="MGL"; version="1.1"; sha256="03q453swnangxyc4nvjhzw2zpcy5vp1wpilap5rwymnf0c0xi4j7"; depends=[]; }; MGLM = derive2 { name="MGLM"; version="0.0.8"; sha256="1yzi679jm7x9qkz0d3az84clkjfc7wjnxkk6n6s6ia4bnw05d5v7"; depends=[]; }; @@ -1843,12 +1885,12 @@ in with self; { MPDiR = derive2 { name="MPDiR"; version="0.1-16"; sha256="10g4dnysjnzf106qibqqcrxz3xw2nfh4ck1n1dlciwahr0f80j13"; depends=[]; }; MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; }; MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; }; - MPSEM = derive2 { name="MPSEM"; version="0.3-2"; sha256="10kh0ss2m8j09risnwk550p0bdd73asgdm8qjjwb2ii6bi31lw5g"; depends=[ape MASS]; }; + MPSEM = derive2 { name="MPSEM"; version="0.3-3"; sha256="0ir1zlg0vz0nfdair3apa737dw4078lbxyk932755d3rj0cm20c3"; depends=[ape MASS]; }; MPTinR = derive2 { name="MPTinR"; version="1.10.3"; sha256="0281w5dhg8wmi1rz80xribq437shp4m890c504kggsacr28mbhkw"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; MPV = derive2 { name="MPV"; version="1.38"; sha256="1w3b0lszqmsz0yqvaz56x08xmy1m5ngl9m6p2pg9pjv13k8dv190"; depends=[]; }; MRCE = derive2 { name="MRCE"; version="2.1"; sha256="12q7mqn2qkgv992df71k1xmli61khhbfm7lw0n7z2l7qqldpiw1n"; depends=[QUIC]; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; - MRFA = derive2 { name="MRFA"; version="0.1"; sha256="1z6bnss9p8p8a2wxy40yp62ypxpis6k2j7naspdjcv09b1882jdg"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; + MRFA = derive2 { name="MRFA"; version="0.2"; sha256="1ld9bchldx4y8g0zp2nr6r439f9vqy5xcr9bkv4g4vphm2c5zq72"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; @@ -1860,19 +1902,21 @@ in with self; { MSBVAR = derive2 { name="MSBVAR"; version="0.9-3"; sha256="0ybkkl3hfff2jgz4a0z105bb0v6jl4dkkqmdg382and8w0mc496c"; depends=[bit coda KernSmooth lattice mvtnorm xtable]; }; MSCMT = derive2 { name="MSCMT"; version="1.3.0"; sha256="0rwhfk6dh10zn1zgjamwx23j8i9kw1p6yzfgxj5ch7w3d3yzhrbf"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; MSG = derive2 { name="MSG"; version="0.3"; sha256="181kzkbw69bs3vir6dzgq7jzp8xcpg1p4isfb660vgnd1flb03ix"; depends=[RColorBrewer]; }; - MSGARCH = derive2 { name="MSGARCH"; version="0.17.7"; sha256="01n8ngk0r2hfa5vrj0mbc09kq9dj0d4fjzhszcj80mzfr47jf5vf"; depends=[adaptMCMC DEoptim dfoptim expm fanplot ggplot2 nloptr Rcpp RcppArmadillo reshape2 stringr zoo]; }; + MSGARCH = derive2 { name="MSGARCH"; version="1.1"; sha256="1pclfp7x629axby4kpfnrvnr6lpm8f4pimwsvwnpda3sx0pfvkkx"; depends=[adaptMCMC coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSIseq = derive2 { name="MSIseq"; version="1.0.0"; sha256="1v2why1k6pjsc04044nr74571p7541nciq7xkzmya3jq6dw878j3"; depends=[IRanges R_utils rJava RWeka]; }; MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; MST = derive2 { name="MST"; version="2.0"; sha256="131c98lzy1cs1gbv20nv9r6yhlyyhk43hh1mrx12k1cgw299265k"; depends=[Formula MASS partykit survival]; }; + MSbox = derive2 { name="MSbox"; version="0.1.0"; sha256="0r6dprmvlga58drdk3x7z1rzy12lmmxcqng8534la8d3g6hhdwmz"; depends=[]; }; MScombine = derive2 { name="MScombine"; version="1.1"; sha256="0kgz1l4jlhcada3fp02dscf4zx6a22cjxj251838lfz65f512hrn"; depends=[plyr]; }; MSeasy = derive2 { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; }; MSeasyTkGUI = derive2 { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; MSwM = derive2 { name="MSwM"; version="1.2"; sha256="01l23ia20y3nchykha4vz6sa757zmbvgx2315cacxfcqk9rgs08c"; depends=[nlme]; }; - MTA = derive2 { name="MTA"; version="0.1.0"; sha256="0h1nnvylp5yvzx6mljayjjz73l0bjyz5zahymxa9z3z7jlahvkwh"; depends=[igraph rgeos sp]; }; + MTA = derive2 { name="MTA"; version="0.1.1"; sha256="07bkisjvdxzf79ngwc8c5ikmnfas82m894hdc87q2yh0lzf12987"; depends=[igraph rgeos sp]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; + MTE = derive2 { name="MTE"; version="1.0.0"; sha256="009mrl9dgxafl4hrgfzvsfvgx3dljb0rbbs74j2cxc5ray87kp55"; depends=[parcor quantreg]; }; MTS = derive2 { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[fGarch mvtnorm Rcpp]; }; - MTSYS = derive2 { name="MTSYS"; version="1.0.0"; sha256="0gap1ghwkfa8ni11wgrck4zsngf9j470vwv1jdzmsmr963q1yw1w"; depends=[]; }; + MTSYS = derive2 { name="MTSYS"; version="1.2.0"; sha256="04dkan3hxl3difflskp7d1lw1bvxhg4s28ssy2v4m7z7wbpj3v1m"; depends=[]; }; MTurkR = derive2 { name="MTurkR"; version="0.8.0"; sha256="0q498chr2s67ai7lfxi6kdficqbs5sxj9asyv69z2a37fmsr4va7"; depends=[base64enc curl digest XML]; }; MTurkRGUI = derive2 { name="MTurkRGUI"; version="0.1.5"; sha256="1rlgz80na0v1nx70cda1fzyswlb1lg5kcx64zl9dcqy6accsrpmp"; depends=[curl MTurkR XML]; }; MUCflights = derive2 { name="MUCflights"; version="0.0-3"; sha256="03ksvv5nyzlqiml1nz405r3yqb2cl35kpm1h61zcv2nqq8cxqshs"; depends=[geosphere NightDay RSQLite sp XML]; }; @@ -1884,17 +1928,17 @@ in with self; { MVR = derive2 { name="MVR"; version="1.32.0"; sha256="18arp9xh9dflbmc5zxafy132mnz5xwc6kb9hv51njz602kms70qg"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; MVar_pt = derive2 { name="MVar.pt"; version="1.9.8"; sha256="0ysdrdjlljbscw92ylyq4m22zvj3b9yp9mpw4pdlnzwix9z0k2yx"; depends=[]; }; - MVisAGe = derive2 { name="MVisAGe"; version="0.1.0"; sha256="04p5kvi1nkwwi1apwd0ycnp139yl024qq419d887n3hc0rlrd4kb"; depends=[]; }; + MVisAGe = derive2 { name="MVisAGe"; version="0.2.0"; sha256="18w3qf85l81sbxhzxs61jbsng14lbd8vzvbprq0ywkxb2lsq16n2"; depends=[]; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; - MXM = derive2 { name="MXM"; version="0.9.9"; sha256="1d6k941psi7d4ycsalvbi8n6xhahj235fgq75izjvnwxbs0j704b"; depends=[doParallel e1071 energy foreach lme4 MASS nnet ordinal quantreg relations Rfast speedglm survival visNetwork]; }; + MXM = derive2 { name="MXM"; version="1.0.0"; sha256="1f2ml4q33ml28y0h68bll2lmb1xxnjxgdxi5mf8arzl42b3d72b6"; depends=[doParallel energy foreach lme4 MASS nnet ordinal quantreg relations Rfast speedglm survival visNetwork]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MagneticMap = derive2 { name="MagneticMap"; version="1.0"; sha256="1634bk6x92z01gyiy89c1g6z5cjsj8pf4f358y7rk2kppmfz4cf7"; depends=[scatterplot3d]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; ManifoldOptim = derive2 { name="ManifoldOptim"; version="0.1.3"; sha256="1ppc0ik7vx14n6alq9wpykgfacg78ph9fc5r9k9jqm55nwz4d3xh"; depends=[Rcpp RcppArmadillo]; }; - ManlyMix = derive2 { name="ManlyMix"; version="0.1.7"; sha256="10m5kfs8n34frygn36ryn4h8128p4smmr5s2ngbbj05dchni09ai"; depends=[]; }; + ManlyMix = derive2 { name="ManlyMix"; version="0.1.9"; sha256="0zf3j0vs3gg697dlma9j92davf6x7isykgx01018zzivlabrrc6b"; depends=[]; }; ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.1"; sha256="19gafyql767f1p4fxdw7d5a8z1b4vg7jfrvzaml5x16fj6c78fjm"; depends=[]; }; MapGAM = derive2 { name="MapGAM"; version="1.0"; sha256="1hzv3sy2szxl4fhnnzlwagh3qm4z22cbhiwi8whgn5ymwlnw0pca"; depends=[gam maptools sp survival]; }; @@ -1908,8 +1952,8 @@ in with self; { Matching = derive2 { name="Matching"; version="4.9-2"; sha256="0lv5b41l797c4bl2rzmdqzjnn47zpvvcv3md3xwxvvz5knxky5x4"; depends=[MASS]; }; MatchingFrontier = derive2 { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[igraph MASS segmented]; }; Matrix = derive2 { name="Matrix"; version="1.2-11"; sha256="1yvd6fx3n99j4gvzrng43ji38pr5h8y03kijccgjdalym2hcp36g"; depends=[lattice]; }; - Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.5"; sha256="057lms2xdp13wcglg8hg95blj60f5zhva26jlkm2z1vi11jiy728"; depends=[grr Matrix]; }; - MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.1"; sha256="1m14fh52l7zb9pyj2swisrz8dfw68k1p90rgg0g9zqkmx6fp5qls"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; + Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.6"; sha256="0aa225y6vqm0dqjfppfrc43wbq3ks9aszhmy73xbai2v12sh439g"; depends=[grr Matrix]; }; + MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.2"; sha256="0s4gxgl6fsy0fnjmsdz4k7p96vl6p00xl9w2fg7v0gikjpz6h5bg"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.1.1"; sha256="1bvfhzhvm1psgq51kpjcpp7bidaxcrxdigmv6abfi3jk5kyzn5ik"; depends=[]; }; MatrixLDA = derive2 { name="MatrixLDA"; version="0.1"; sha256="19q6wl8fc6jzn7544qnlpzfh9v0xlg9cr78l6k8kx6kzjnbnyh9z"; depends=[glasso plyr Rcpp RcppArmadillo]; }; MatrixModels = derive2 { name="MatrixModels"; version="0.4-1"; sha256="0cyfvhci2p1vr2x52ymkyqqs63x1qchn856dh2j94yb93r08x1zy"; depends=[Matrix]; }; @@ -1928,7 +1972,7 @@ in with self; { MenuCollection = derive2 { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[gplots RGtk2 RGtk2Extras]; }; MergeGUI = derive2 { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; - MetFns = derive2 { name="MetFns"; version="3.0.0"; sha256="0h2zic2abkifwz8ysy46980frc15rlpzirgk045m4qms91zk08fl"; depends=[astroFns lubridate plotrix pracma]; }; + MetFns = derive2 { name="MetFns"; version="3.0.1"; sha256="1irrwg3a1m6a820zg7f13x84rfgd3z2xl4qc4y096y4agn6h7v97"; depends=[astroFns lubridate plotrix pracma]; }; MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; }; MetProc = derive2 { name="MetProc"; version="1.0.1"; sha256="1z6538pij1rq5wv9s8rjcn0sck15y26asv4vamav8a6s4135ia3q"; depends=[fastcluster gplots]; }; MetSizeR = derive2 { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; @@ -1944,7 +1988,7 @@ in with self; { MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; MetaQC = derive2 { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive2 { name="MetaSKAT"; version="0.60"; sha256="13qffirv0lnj0bflzjpr2hd0d8j4bkakyfjvicp40f0v4v3cack2"; depends=[SKAT]; }; - MetaSubtract = derive2 { name="MetaSubtract"; version="1.0"; sha256="0yn5ymx22wxn0j6j0w6nxj2mr9nb4qf7ypflikpj9h5qqiln2nn7"; depends=[]; }; + MetaSubtract = derive2 { name="MetaSubtract"; version="1.1"; sha256="0p1fqglrhf3yvdmg6cr3clipf4jhhv3fmb7visrjc27sgcvlwws8"; depends=[]; }; MetaboList = derive2 { name="MetaboList"; version="1.2"; sha256="15wkj29s1mxi1wzqzlh8lkr5jkw15dbc37h3hzsc0r72a3ddzf38"; depends=[enviPick]; }; MetaboQC = derive2 { name="MetaboQC"; version="1.0"; sha256="1hm0ndwda1ciyyg8igkpaalvvdyd7aq5wnl9gzza8fr1l9fxp4a2"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; }; @@ -2007,6 +2051,7 @@ in with self; { MotilityLab = derive2 { name="MotilityLab"; version="0.2-5"; sha256="080j548sp1c4yqqd7p7zgr70j1xyrw3fgjj1f521sgh84x5h2hbc"; depends=[ellipse]; }; MplusAutomation = derive2 { name="MplusAutomation"; version="0.7"; sha256="0xnipvfib16ycxglqnr5x0h19km0sw966w1xhaxw2ii6cm82ks0l"; depends=[boot coda digest gsubfn lattice pander plyr texreg xtable]; }; Mposterior = derive2 { name="Mposterior"; version="0.1.2"; sha256="16a7wvg41ld2bhbss480js5h12r41nl7jmc3y4jsbv1lr5py4ymy"; depends=[Rcpp RcppArmadillo]; }; + MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; }; MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; MuMIn = derive2 { name="MuMIn"; version="1.15.6"; sha256="08qac7d1w367wjsz7n9ydziacbf8np8w8mm9izbxd4pk3ibxwi5a"; depends=[Matrix]; }; MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; }; @@ -2052,7 +2097,7 @@ in with self; { NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHEMOtree = derive2 { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; }; NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; }; - NHMSAR = derive2 { name="NHMSAR"; version="1.5"; sha256="1s94icc99b9vaaypxy5q4pnid1kqmh4xx4p7yb52i9zizpw9sr90"; depends=[caTools glasso lars ncvreg SIS ucminf]; }; + NHMSAR = derive2 { name="NHMSAR"; version="1.6"; sha256="02g3yhd5xmrk15ydj110yd80aff2vxk852b4kbhnl3flnf3j2mzk"; depends=[caTools glasso lars ncvreg ucminf]; }; NHPoisson = derive2 { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; }; NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; @@ -2084,10 +2129,10 @@ in with self; { NPflow = derive2 { name="NPflow"; version="0.13.1"; sha256="0sq47frh665m8mibif1w3i2z5pb577v1ngdjirbya0a9chpmwc3s"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; NSA = derive2 { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; }; - NSM3 = derive2 { name="NSM3"; version="1.9"; sha256="0ianzczznigkbialzdm43w9wkgnsx24393v7hnxcvxqczzhl795h"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; + NSM3 = derive2 { name="NSM3"; version="1.10"; sha256="118pp3a11w4wyjq18jm3f7xy79l5jyjsyxgkyxbwsrr7lvplqzb2"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; NScluster = derive2 { name="NScluster"; version="1.1.1"; sha256="1w63abh4q0wgv3x7inl2xyp9qgr9m223r2p7nfiqnxk9y259kh04"; depends=[]; }; - NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4"; sha256="00zdwm722v625dyya323jlipicpmfxvzxxf072x3fn4b97xc8h8n"; depends=[snowfall]; }; + NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.1"; sha256="1grz2yxrklqglw9027c8k01jnb42p453fcd38arw4wd85y5hbam4"; depends=[snowfall]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.4"; sha256="1f8hmabwafjmgx2z381a3m84zfrd0s9x51haa4c1phq41yfq2lm5"; depends=[]; }; NanoStringNorm = derive2 { name="NanoStringNorm"; version="1.1.21"; sha256="1rbmhk5kags3mm4znakfp1c7axdpv4gmh2h0sydvyc2dm1vds5k4"; depends=[gdata vsn]; }; NbClust = derive2 { name="NbClust"; version="3.0"; sha256="1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"; depends=[]; }; @@ -2125,6 +2170,7 @@ in with self; { NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-0"; sha256="1c57jxb9n397wdkrirbfh70sxllrg9zsy0np698z7kcx83rz5lqr"; depends=[curl xml2]; }; + OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBRE = derive2 { name="OBRE"; version="0.1-0"; sha256="1sxfb8mn0ky8x177l3v6wwcr96h5hfwd718h1akwrpir7acldchl"; depends=[pracma]; }; OBsMD = derive2 { name="OBsMD"; version="0.2-0.00"; sha256="16km0v6678lbgh9n2d9nvmpq6k7d2gicc68wnfy4kvn9vmpr79cz"; depends=[Rcpp]; }; OCA = derive2 { name="OCA"; version="0.1"; sha256="0kaf46gic8gp8f98y68kqvgm1baicwgvarfiwry1j0bd2rjad64d"; depends=[]; }; @@ -2154,8 +2200,9 @@ in with self; { OTUtable = derive2 { name="OTUtable"; version="1.1.1"; sha256="0mjjfndc67gzkqskcq4sxpr8fwx3lm3wjgapgg64rbj5x4i1w4rp"; depends=[]; }; OUwie = derive2 { name="OUwie"; version="1.50"; sha256="1gzgwax9kmcr6rl6nv10xn536nbkjhmg6sqax58xxinc00ykdx75"; depends=[ape corHMM corpcor expm lattice nloptr numDeriv paleotree phangorn phytools Rmpfr]; }; Oarray = derive2 { name="Oarray"; version="1.4-5"; sha256="1w66vqxvqyrp2h6acnbg3xy7cp6j2dgvzmqqk564kvivbn40vyy4"; depends=[]; }; - OasisR = derive2 { name="OasisR"; version="2.0.1"; sha256="0knkq33yf0b5flbkmc5ng4ys4x840rzkfrr26jcp7ri3bqg87lqv"; depends=[birk rgdal rgeos spdep]; }; + OasisR = derive2 { name="OasisR"; version="3.0.0"; sha256="0dk8asv5v0qiqqf45r3hhh67sa03qdkpgsss649mp2pxzm8chv1y"; depends=[measurements outliers rgdal rgeos seg spdep]; }; OceanView = derive2 { name="OceanView"; version="1.0.4"; sha256="072gjbka7ncp5sa463kbi06fjx7nm1ljgzpx4b7ybq9pcwvnyzz6"; depends=[plot3D plot3Drgl rgl shape]; }; + Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; Ohmage = derive2 { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; }; OjaNP = derive2 { name="OjaNP"; version="0.9-9"; sha256="12a7zfrk3rdvfby5qa511w3nk5jpnsd5gg2z46b5s97rxb3qq7za"; depends=[ICS ICSNP Rcpp]; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; }; @@ -2170,7 +2217,7 @@ in with self; { OpenImageR = derive2 { name="OpenImageR"; version="1.0.6"; sha256="0mp79l2yaix4pagvjv41z01arpw2qpx1mzib82vklsbb7g85k1z2"; depends=[jpeg png Rcpp RcppArmadillo shiny tiff]; }; OpenML = derive2 { name="OpenML"; version="1.6"; sha256="0khcach9myls6nfqm308nvhv8ylzysg2v3aw8l79ajfmdp83s1am"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.1-2"; sha256="1cpsbjmqql0fsjc1xv323pfkhfr9vrcv5g4j3p1qc5zn4z9pq7r6"; depends=[]; }; - OpenMx = derive2 { name="OpenMx"; version="2.7.16"; sha256="1jpx8z1ql8phh59kvb4jc7pd65b6mxrg61sdk8kx8pkw22qh8fip"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.7.17"; sha256="0f7x2d9rgb93rlwhjcr0fhgi7bi8f0hjfp4gg8kq8z64cw668qij"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.10"; sha256="0ikw8l9hffcaa094y6pnvyc3ly5jb02djaakz668ba15a0yw0wmb"; depends=[abind colorspace GPArotation plyr psych pvclust rgl stringr XML]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; }; Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; }; @@ -2192,6 +2239,7 @@ in with self; { OutbreakTools = derive2 { name="OutbreakTools"; version="0.1-14"; sha256="03bdb7w5nsrjxz5kd5zvgwybgmv2mzsxyzdc7v3kpwi20yfb9ax8"; depends=[ape ggmap ggplot2 knitr network networkDynamic plyr RColorBrewer RCurl reshape2 rjson scales sna]; }; OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; }; + OutliersO3 = derive2 { name="OutliersO3"; version="0.2.1"; sha256="09kq3jhsqxwqsnn8av12jd0qxw0ai1h0f46mib1z0bwwbxg6bf9h"; depends=[cellWise dplyr FastPCS forcats GGally ggplot2 HDoutliers rlist robustbase robustX tidyr]; }; OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; P2C2M = derive2 { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; @@ -2244,11 +2292,11 @@ in with self; { PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.8"; sha256="17lmjfbwf8j68zzzhdvppyjacdsmy4zmcfj0pcjsw5j6m361hvh6"; depends=[]; }; PHeval = derive2 { name="PHeval"; version="0.5.3"; sha256="1zq4ks6w5vrhy1f170fv16zgrgi1lfxmkpfkg75sjin7asw4i7a9"; depends=[survival]; }; - PIGE = derive2 { name="PIGE"; version="0.9"; sha256="1x8ml25mm69dvlszm9p2ycph92nxcsgd52ydj7ha0dwrrpcv2law"; depends=[ARTP snowfall survival xtable]; }; + PIGE = derive2 { name="PIGE"; version="1.1"; sha256="0pc24rvvxzpgrsx7xsj98n5vd462hjggakzwp36qdkib69yyr4bn"; depends=[ARTP snowfall survival xtable]; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-3"; sha256="07qxyszj0f7qwrg5ixvciy33mjsfxxi9rk32a1fz46z8wiwfil9i"; depends=[]; }; - PKI = derive2 { name="PKI"; version="0.1-3"; sha256="1xhc84k4iszvfawwwzrwclfs41nvb8bmyygapxmsxjky725s7k1g"; depends=[base64enc]; }; + PKI = derive2 { name="PKI"; version="0.1-5.1"; sha256="1xs3jxbczhkxnp7cyw2yh1jcwha92y9pdsbka1ligbla70bnvxyj"; depends=[base64enc]; }; PKNCA = derive2 { name="PKNCA"; version="0.8.1"; sha256="1by2yp1ngqv06w7dfl7lbb80gnmpid4xg1yhk4zvx8bwss0ggzph"; depends=[digest dplyr lattice nlme plyr tidyr]; }; PKPDmisc = derive2 { name="PKPDmisc"; version="2.0.0"; sha256="0rn5m5wak6lis5wck2ws934bzy8w65wj1d0l3rz8svfd8agf2ys8"; depends=[BH data_table dplyr ggplot2 lazyeval magrittr purrr Rcpp readr rlang stringr tibble]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; @@ -2258,7 +2306,7 @@ in with self; { PLMIX = derive2 { name="PLMIX"; version="1.0"; sha256="1z59z7ynlfh7cskanj7drvry0fpzl5mq52as8adi2zxp2q8q032p"; depends=[abind combinat foreach FSA rcdd Rcpp]; }; PLRModels = derive2 { name="PLRModels"; version="1.1"; sha256="0dwnzfw7a1cxz9s00kxf19jmjsc8cy6cc9q2mjqf8z7690wrg7hb"; depends=[]; }; PLSbiplot1 = derive2 { name="PLSbiplot1"; version="0.1"; sha256="1l8d1k913ic0qwxvrrd447p5ni3mzc6v9lv45b7vqrpzkxdci6gy"; depends=[]; }; - PLmixed = derive2 { name="PLmixed"; version="0.1.0"; sha256="1xg5zg646ihm7cnpi77hkcvymvix4jagl77ysqi8j27z4jiak9gq"; depends=[lme4 Matrix numDeriv]; }; + PLmixed = derive2 { name="PLmixed"; version="0.1.1"; sha256="1ihhrmhzvbd4mswi227s81wkk42vdps42pnvkaz71p4y9a7d7szf"; depends=[lme4 Matrix numDeriv]; }; PLordprob = derive2 { name="PLordprob"; version="1.0"; sha256="156lvz6vfm68hm32l5nlhq15hfacdla627d6lf8l4g34lwzdh8k8"; depends=[mnormt]; }; PMA = derive2 { name="PMA"; version="1.0.9"; sha256="11qwgw4sgzl3xhrm468bsza83h3mfn89157nfwnrassl7qr42xkq"; depends=[impute plyr]; }; PMCMR = derive2 { name="PMCMR"; version="4.1"; sha256="0mfms8wvdwcakkgsnrb2wawp07hvlr7s6cvl54kxv7f5fqllw5kc"; depends=[]; }; @@ -2270,7 +2318,7 @@ in with self; { PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.1"; sha256="02073yxdwns9mnnjvw13ydw1s3vrxl53szcd9jy8ibj78vnm57r3"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; PRIMME = derive2 { name="PRIMME"; version="2.1-0"; sha256="1sjgy923ppp28qhkvhgv2xmx7b7aqd17g60af1my44ygdsd8c1kw"; depends=[Matrix Rcpp]; }; - PRIMsrc = derive2 { name="PRIMsrc"; version="0.7.3"; sha256="0mppmgg435fjg33pxql67rygyr5nibvcac9q2nxgq9fqyya70gys"; depends=[glmnet Hmisc quantreg superpc survival]; }; + PRIMsrc = derive2 { name="PRIMsrc"; version="0.7.4"; sha256="1g373v404zlwpzjamrwjbl472vyczhdz4fx4m6dczinbajysfcl1"; depends=[glmnet Hmisc quantreg superpc survival]; }; PRISMA = derive2 { name="PRISMA"; version="0.2-6"; sha256="1yzcx4js0xaxp1mp7ginhfz8jji49rkw3x15a9mlmpz260gkfs98"; depends=[ggplot2 gplots Matrix]; }; PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.1"; sha256="1qk9cljk52m8rcasck8cl7gwzhcsx0p58jn31izy2j027w0rns7j"; depends=[DiagrammeR]; }; PROFANCY = derive2 { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[igraph lattice Matrix]; }; @@ -2285,8 +2333,10 @@ in with self; { PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; PSCBS = derive2 { name="PSCBS"; version="0.63.0"; sha256="0pgha1rvb9nfxkr8fxc17zgws781qwmrl01rss7bd0sf2n2lw2k2"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; }; - PSIMEX = derive2 { name="PSIMEX"; version="1.0"; sha256="0py58x1sqxdas8ny6dqj0x9wcpglyxl6v70wwd68z30w1ppyiq13"; depends=[knitr MCMCglmm pedigree plotrix]; }; + PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; + PSTR = derive2 { name="PSTR"; version="1.1.0"; sha256="1wzbwll5c2qsvngzqycg2zk6dghbr45mk8chj6kzzppmkk7vzj47"; depends=[ggplot2 snowfall tibble]; }; + PSW = derive2 { name="PSW"; version="1.1-1"; sha256="0zrf8daxwxypw2ckr9h9b0xl7m2zbhbssg7bv584m3k3mk6aqwl1"; depends=[gtools Hmisc]; }; PTAk = derive2 { name="PTAk"; version="1.2-12"; sha256="1phxh2qbzsj2ia2dr6z30lhi765lk1m8lbk57sdgvm14fmi9v5nk"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.5"; sha256="1wx90b34yrc2rwg6yh2hiivirp1c1357h276jzjc0kzchkkxv4g2"; depends=[doParallel foreach survival]; }; PTXQC = derive2 { name="PTXQC"; version="0.90.0"; sha256="1jcx864skn1p9y7v951grm7n8waby8wkqahhnyb2r51qj3zdlilf"; depends=[data_table ggdendro ggplot2 gridExtra gtable kableExtra knitr plyr proto RColorBrewer reshape2 rmarkdown seqinr yaml]; }; @@ -2299,6 +2349,11 @@ in with self; { PairViz = derive2 { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; PairedData = derive2 { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; PairwiseD = derive2 { name="PairwiseD"; version="0.9.62"; sha256="19qjms99gf7s39nwwgj56n8426d0gw80dipz165sk3km4zb2mcwv"; depends=[openxlsx xlsx]; }; + PakPC2017 = derive2 { name="PakPC2017"; version="0.3.0"; sha256="0cm6yjplc49qkvash9lswf0k6j92m0arwgk51y5xczixhz4xlg2n"; depends=[curl data_table]; }; + PakPMICS2014Ch = derive2 { name="PakPMICS2014Ch"; version="0.1.0"; sha256="0gjrx34613d9wzal292zfzh8hmkav271fqb0skdxd1f8rs2c79dg"; depends=[data_table]; }; + PakPMICS2014HH = derive2 { name="PakPMICS2014HH"; version="0.1.0"; sha256="1n6cyanqafscizgi1xqmc19w59yigxk5mvqinbivpdr7rydhrac6"; depends=[data_table]; }; + PakPMICS2014HL = derive2 { name="PakPMICS2014HL"; version="0.1.0"; sha256="18i5p54zmqxph0lkbgz4ahrbmi2jwhjwdca7aqvx9az18ki5c9sx"; depends=[data_table]; }; + PakPMICS2014Wm = derive2 { name="PakPMICS2014Wm"; version="0.1.0"; sha256="1sczczk07n91c21iqkxz1j1hixrk6p0c30ggahxbmk1cawqfn4cb"; depends=[data_table]; }; PanJen = derive2 { name="PanJen"; version="1.4"; sha256="1b5nsacy4bfda4kbvabddkj2mkl709kbbgwgws2p2sj3zxjv554i"; depends=[mgcv]; }; PanelCount = derive2 { name="PanelCount"; version="1.0.9"; sha256="1b6c83qypjc3ylvhh24xm4pjk8w34s24v0i9ddlmg92f1518hlkj"; depends=[Rcpp RcppArmadillo statmod]; }; Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; @@ -2332,7 +2387,7 @@ in with self; { Perc = derive2 { name="Perc"; version="0.1.2"; sha256="0p6l4b536jjz4lmgsdrxqsh77lx4vkb6hbyd6vhbc102m5x3b1yc"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive2 { name="PerformanceAnalytics"; version="1.4.3541"; sha256="1czchsccsbdfjw743j6rm101q2q01pggyl8zmlva213pwm86zb3v"; depends=[xts zoo]; }; - PeriodicTable = derive2 { name="PeriodicTable"; version="0.1.1"; sha256="0r14byi2pmgvmpl07dhqq4m00ddfaixnzqd5kgav1gxmsw6bk35l"; depends=[]; }; + PeriodicTable = derive2 { name="PeriodicTable"; version="0.1.2"; sha256="133rwbvapk99dmh3vi8p7sa81d7hjmy0g4a5hcmwr3mdq8jzgwrj"; depends=[]; }; PermAlgo = derive2 { name="PermAlgo"; version="1.1"; sha256="16fhdgr4nza9yknsbwiv8pgljfwp8hhva0crs4dbfd0w4j97n5fp"; depends=[]; }; PersomicsArray = derive2 { name="PersomicsArray"; version="1.0"; sha256="1d5gxd65b01m13rgbdhk6w3l43vqcbdk0s1pbgc8h6cnipj55z0i"; depends=[jpeg raster stringr tiff]; }; PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; @@ -2343,7 +2398,7 @@ in with self; { PhyInformR = derive2 { name="PhyInformR"; version="1.0"; sha256="10d720ww909b1xmdrms554pnn0757nzppnrniar4n157mh0qw7ms"; depends=[ape doParallel foreach geiger ggplot2 gplots gridExtra hexbin iterators PBSmodelling phytools RColorBrewer]; }; PhySortR = derive2 { name="PhySortR"; version="1.0.7"; sha256="1xpxkd2bf3xdsfwa0bzkppr6y7p6v7s4iy0x0m8fiwj93n9jh0pz"; depends=[ape phytools]; }; PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; }; - PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.0.1"; sha256="197js49vybrdby0wrpncfis2zi2hfhc24dmk14563gl7gg7v8iwx"; depends=[ape capushe foreach gglasso glmnet LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; + PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.1.0"; sha256="0ji78zx0gp1nd5assrmwxdkxryfjijnn9g34w2g2qv32s1fdj6ak"; depends=[ape capushe foreach glmnet grplasso LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; }; PhysActBedRest = derive2 { name="PhysActBedRest"; version="1.0"; sha256="0gmqh700cf6aiagb45iyyf85pgp3b86fx7fbv9lrsm4mda0r8h75"; depends=[chron lubridate stringr]; }; PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.1-1"; sha256="1aqyip7psf3pdrxkpidfldkk9naihvnc7s3n6w6vvr9h1l5mpmvc"; depends=[]; }; Pijavski = derive2 { name="Pijavski"; version="1.0"; sha256="1027lmmk17br9zxah980j6l3k2p92065bwigw6gpy9g0g5jjl4f1"; depends=[Rcpp]; }; @@ -2389,7 +2444,7 @@ in with self; { PracTools = derive2 { name="PracTools"; version="0.6"; sha256="0y6gqqk2inq96afr50qwv19bwjc0kyvd1jnmacsda2fxgplflzgx"; depends=[]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.4"; sha256="0zvy7wx9wfsdcvnjdr1angh0shqwhlm48byc0ymciqlx6xagaw0b"; depends=[oompaBase]; }; - PredPsych = derive2 { name="PredPsych"; version="0.2"; sha256="1fppjwh1g2irxafaaid2y7ln1psii7kx369jbnl63kadmpd36q7p"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; + PredPsych = derive2 { name="PredPsych"; version="0.3"; sha256="0bqc2vl32z9wzby7ncrab742cajy4w5kq7wv2gh2jjqdnv9nkia7"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; }; PredictTestbench = derive2 { name="PredictTestbench"; version="1.1.3"; sha256="14np4zvr0labhqxzsv07iqzldfxmnsfk91qpfqz7vyiq0vwcymp4"; depends=[forecast ggplot2 imputeTestbench PSF reshape2]; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; @@ -2437,7 +2492,8 @@ in with self; { QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; QGglmm = derive2 { name="QGglmm"; version="0.5.1"; sha256="1112w9dwbr9smxa869w4833iw1vclscr1zbjn2f0xklnpn3nb40d"; depends=[mvtnorm R2Cuba]; }; QICD = derive2 { name="QICD"; version="1.2.0"; sha256="0ppyl978y7md2n9m4kwhbrgdr5i3df0yw124x84f53w4acipgz5q"; depends=[]; }; - QNB = derive2 { name="QNB"; version="1.1.9"; sha256="1358h00qnxd0c6yg9dwi1qp7svd9avyvfww1xji95xazfx4ksl59"; depends=[exomePeak GenomicFeatures locfit Rsamtools]; }; + QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; + QNB = derive2 { name="QNB"; version="1.1.10"; sha256="12lb0kayndq8gipf457qvk0g9ar0ywaspbffi7s3hvh98gmlzws6"; depends=[exomePeak GenomicFeatures locfit Rsamtools]; }; QPBoot = derive2 { name="QPBoot"; version="0.2"; sha256="1nxmxayfq2xcjzix080mkc8y52wl3vs0rcwdl8lmhwfawjb4pap5"; depends=[abind quantspec rugarch]; }; QPot = derive2 { name="QPot"; version="1.1"; sha256="1ivkk5wdd1lp6v4hwmpr9g230kd7zgmj0vnv5fw0svwpb8zzz14x"; depends=[MASS]; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; @@ -2456,7 +2512,7 @@ in with self; { QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; Quandl = derive2 { name="Quandl"; version="2.8.0"; sha256="0n1c4343ki8nia7qrq2m9zb7b05qr3yjwvk1ji7m44sa613w6y5l"; depends=[httr jsonlite xts zoo]; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; - QuantTools = derive2 { name="QuantTools"; version="0.5.5"; sha256="1jkfnjndbr0hhrsl9cg7llc4y9v3g6s01i034wz22lkhvg3jszy4"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; }; + QuantTools = derive2 { name="QuantTools"; version="0.5.6"; sha256="0ykfxrg4chq4n24spfj2v6cqiw5y7wps2rmnd0150fa6fqk7nd2k"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; }; QuantifQuantile = derive2 { name="QuantifQuantile"; version="2.2"; sha256="01bdz8a6nhjil6n2z62x5g41v3d6md5v16g0ladsl5zc8raivqdq"; depends=[rgl]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.4"; sha256="1dqibl4rnf1qbk44srh8ndka0ni7a463hlpf7sdpgx2b57414jkd"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; }; @@ -2478,10 +2534,10 @@ in with self; { R2G2 = derive2 { name="R2G2"; version="1.0-2"; sha256="05d5vybvsi4pyr099916nk1l8sqszs9gaj2vhsx1jxxks8981na7"; depends=[]; }; R2GUESS = derive2 { name="R2GUESS"; version="1.7"; sha256="07w54r5r9v7pa8aklmwbwdcc57j3a3b46b1a7mwmzcl11mcfwdph"; depends=[fields MCMCpack mixOmics mvtnorm snowfall]; }; R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; - R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-4"; sha256="0ycjqkxjgqlhyn82zadlsqwcc5r2sm5wh3y4pl3xkppmwm131f0s"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc rbugs texreg]; }; + R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-5"; sha256="09p8xrxhcf6biy1mffv31p2hlr19s51f3n67az52f3xv5lyp9wm8"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc rbugs texreg]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2"; sha256="1cxr93g0fkdv3lqdh63l2gcp7qn3q42pm1r6nzf35550k9ahkhnv"; depends=[boot coda]; }; R2STATS = derive2 { name="R2STATS"; version="0.68-38"; sha256="1v8mvkvs4fjch0dpjidr51jk6ynnw82zhhylyccyrad9f775j2if"; depends=[cairoDevice gWidgets gWidgetsRGtk2 lattice latticeExtra lme4 MASS Matrix proto RGtk2Extras statmod]; }; - R2SWF = derive2 { name="R2SWF"; version="0.9-1"; sha256="0xhq4dyi1mj4n38zylgi6d17d5wp402wm3kic05vgssg4pyfda2d"; depends=[sysfonts]; }; + R2SWF = derive2 { name="R2SWF"; version="0.9-2"; sha256="1f7bj2jqm7ys3rimgpsn252j39mw0xd008p3zqi77x1flisla0z3"; depends=[sysfonts]; }; R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; R2admb = derive2 { name="R2admb"; version="0.7.15"; sha256="1v01fbcc7hx6mswn4gkwpm6k171956wk51ls6sgca1i6ia6ckmli"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.5-7"; sha256="0h1d27cddyacx5m5f23rlki97iwni7clffmb2k7a4bznlnjhn50a"; depends=[abind coda R2WinBUGS rjags]; }; @@ -2505,13 +2561,13 @@ in with self; { RAP = derive2 { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; }; RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; RATest = derive2 { name="RATest"; version="0.1.0"; sha256="1pi082iydl6k6l78gpvff5hfk4y7fr82vnhnp28dw215hi0x3891"; depends=[ggplot2 gridExtra quantreg]; }; - RAdwords = derive2 { name="RAdwords"; version="0.1.12"; sha256="0g2lbrqqh3azyc2xlafgqnd1langjg8xhma1njjcd3jn7q21mhnk"; depends=[RCurl rjson]; }; + RAdwords = derive2 { name="RAdwords"; version="0.1.13"; sha256="0zpryvrrbmwd5mnn2wifbfmy26kmf6rpjsqvif8s17sjqqyh7ynj"; depends=[RCurl rjson]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.3"; sha256="0g5sdq6sl7cvsj9fgqhcdxjkrfi53078r0mbzvf69cvz38y5x3sm"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="2.0.2"; sha256="18zmqqh4rnbnaiwi60jfp4xi8fp63ydr3jk9w4ijmy6s4hkpp75g"; depends=[]; }; RArcInfo = derive2 { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; }; RAtmosphere = derive2 { name="RAtmosphere"; version="1.1"; sha256="0mk43bq28hlrjwaycsxca458k8xf00q58czgc17d8yx3kz17a5i0"; depends=[]; }; - RBMRB = derive2 { name="RBMRB"; version="2.0.4"; sha256="0l6w3j4dykxd5r3h3qj7hsz77657bhif7qk020hvmcg17jszr9a2"; depends=[data_table ggplot2 httr plotly rjson]; }; + RBMRB = derive2 { name="RBMRB"; version="2.1.0"; sha256="09zhx06m7513w4srxkv0bmskm21m33zd28mscgzgma4ifbyxr55h"; depends=[data_table ggplot2 httr plotly rjson]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RBesT = derive2 { name="RBesT"; version="1.2-3"; sha256="1d6m3r8amcw9rvivzgxgvsqjxq3xq78z2s29f20r6dxfl7wl7d99"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 lme4 mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; @@ -2529,8 +2585,8 @@ in with self; { RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCurl = derive2 { name="RCurl"; version="1.95-4.8"; sha256="1yrbm8sypizy18qxkl6534fk2gf2ijxhahw6qldk9v5v3cjl68p7"; depends=[bitops]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; - RDML = derive2 { name="RDML"; version="0.9-7"; sha256="03rh1ji473jj7sg53vr73lr9557wd9s3y7cn6450mjgalf9zfh7k"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; - RDS = derive2 { name="RDS"; version="0.7-8"; sha256="0lxnb6zd5lphs9d42pfdzx607w7iz1mpj3z8pb2ri3s4h011g1vn"; depends=[ggplot2 gridExtra igraph reshape2 scales]; }; + RDML = derive2 { name="RDML"; version="0.9-9"; sha256="0amlr7mxp7175a7rd3jw7lhyvp3lnr01y81l27sl148sfb85zar6"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; + RDS = derive2 { name="RDS"; version="0.8-0"; sha256="1waqrnr3hlr1zyvs8qh14dmq8ax2nghnkvz6gs32dbvlirl7zmxk"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales]; }; RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; }; RDStreeboot = derive2 { name="RDStreeboot"; version="1.0"; sha256="10ry8rna450j389cplvyvgwljxa8lli7licwdin64b1kyzy2cdn7"; depends=[]; }; RDataCanvas = derive2 { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; }; @@ -2568,10 +2624,11 @@ in with self; { RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2"; sha256="1w28yfzk3ilbz1r9fsc76cigyrnzzhsfm3a81ff8g26za7cb8vjp"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; RGenetics = derive2 { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; }; + RGeode = derive2 { name="RGeode"; version="0.1.0"; sha256="1g8ha6zg4pvi8qimiihsa6rjfdcyj0q526l44jajjbqczmwg59lv"; depends=[MASS Rcpp]; }; RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.1"; sha256="1049fyxl00izw92rm508p90asjp0agmv38b00yfbmasfzsp1r00s"; depends=[httr lubridate]; }; RGoogleAnalyticsPremium = derive2 { name="RGoogleAnalyticsPremium"; version="0.1.1"; sha256="0d22pdd5kvnrspikfb66ny07pgx96rvykr0zi78rwn6g1symdb4q"; depends=[httr jsonlite lubridate]; }; RGoogleFit = derive2 { name="RGoogleFit"; version="0.3.1"; sha256="0g4r5vb9zv6mqym1mh028ic9hkmlpklrhq4ks5sys7y60ps893k1"; depends=[bit64 httr jsonlite RCurl]; }; - RGraphM = derive2 { name="RGraphM"; version="0.1.9"; sha256="1rba0vymw0vgkd9wv4dfx1l8lja73sfjpdvqk2ggiaqcii12z2xh"; depends=[Rcpp RcppGSL]; }; + RGraphM = derive2 { name="RGraphM"; version="0.1.11"; sha256="0fj1ww4q3gl707id2qv4c2aw9cdbnhxxi6x6a72r3d0bbb0yl8l9"; depends=[Rcpp RcppGSL]; }; RGraphics = derive2 { name="RGraphics"; version="2.0-14"; sha256="0bv95g17pvpq3nji0akphdaznh9k85hf5z78qypxwfqr76brxd05"; depends=[ggplot2 lattice]; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.33"; sha256="0d5r0lrkk1ixhln94pm6d5d88bqs0h8p2sdczb7r7ah007ffmhic"; depends=[]; }; RGtk2Extras = derive2 { name="RGtk2Extras"; version="0.6.1"; sha256="19gjz2bk9dix06wrmlnq02yj1ly8pzhvr0riz9b08vbzlsv9gnk2"; depends=[RGtk2]; }; @@ -2638,7 +2695,7 @@ in with self; { RNetCDF = derive2 { name="RNetCDF"; version="1.8-2"; sha256="0pn45z1bj777nkfglvwwhpji8vz39sd51yszfa5g6rqxiw1a7y5d"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.0.1"; sha256="1vxzcsiapnq8101iq4w73m9k8cq2khgcsxak71x72n295r7qpsd6"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="0.7.0"; sha256="1c2diwcd6rsscw3nhvkv745rcrj5xpwf3rcsxy99nsmdgwl3zbk5"; depends=[Rcpp]; }; + RNifti = derive2 { name="RNifti"; version="0.7.1"; sha256="0ysr967qqid84vh6q13z045lqpi15d4pmicx59qmvfpsdpy0dz6w"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.6.0"; sha256="0a820m1f4j8d6xwpkmk1n6g73zycrygrxzs3c4fx09kfsbc0v0rk"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROC632 = derive2 { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; }; @@ -2654,7 +2711,7 @@ in with self; { ROI_models_miplib = derive2 { name="ROI.models.miplib"; version="0.0-1"; sha256="1viqr0dqza9386m9xmfdm5riaczp4izf3bd2jk70cmdgypjj6mzg"; depends=[R_utils Rglpk ROI]; }; ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.0"; sha256="13ai7zkd00a03vyzfy1sm64cx8328xzwz5v8yw0shkdz5rchaq2d"; depends=[ROI]; }; ROI_plugin_alabama = derive2 { name="ROI.plugin.alabama"; version="0.2-5"; sha256="0hd5v0n9pa3a02hhlknj4xa2h1y4p8132i6wky7v5h2gls6prqwl"; depends=[alabama ROI]; }; - ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.3"; sha256="1wkik3142w9abphgyl3zp40by26wzw75lx7s9ad9ppkhyzwmmsn8"; depends=[clpAPI Matrix ROI slam]; }; + ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.4"; sha256="0fzrb4q2mcf3j4d4j8r354n6fyv2rik0ypp01l54zbm8s2r29bwb"; depends=[clpAPI Matrix ROI slam]; }; ROI_plugin_cplex = derive2 { name="ROI.plugin.cplex"; version="0.2-5"; sha256="028w9hzj1ynrsqslb89dxkkivdsi1c4cvvhgvmjz0rnxy9qxz57j"; depends=[Rcplex ROI slam]; }; ROI_plugin_ecos = derive2 { name="ROI.plugin.ecos"; version="0.2-5"; sha256="1h2pcxjhwfvrrjrmjf4wl87pfhdbwirjwblpcyvj1hrhcks56y4y"; depends=[ECOSolveR Matrix ROI slam]; }; ROI_plugin_glpk = derive2 { name="ROI.plugin.glpk"; version="0.2-5"; sha256="1n9n5rzbhcwc0gzbdqadk41d6j8ysyzsjld87y9l06c3dchiwkz8"; depends=[Rglpk ROI]; }; @@ -2675,6 +2732,7 @@ in with self; { ROptEst = derive2 { name="ROptEst"; version="1.0.1"; sha256="0160xs3bmk1bdan7gkibc50qfzxlmi413grvs0bib74xlr0x2kgj"; depends=[distr distrEx distrMod RandVar RobAStBase startupmsg]; }; ROptEstOld = derive2 { name="ROptEstOld"; version="0.9.2"; sha256="0blf34xff9pjfy983xm7a27xqkh9173nk64ysas6f0g4h31gh8ax"; depends=[distr distrEx evd RandVar]; }; ROptRegTS = derive2 { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[distr distrEx RandVar ROptEstOld]; }; + ROptSpace = derive2 { name="ROptSpace"; version="0.1.1"; sha256="01n99hsph4p4hvh9wimh7p3g38ww1bcdh6v4rd1hj18964v166a2"; depends=[]; }; ROptimizely = derive2 { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; }; ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; }; RPANDA = derive2 { name="RPANDA"; version="1.3"; sha256="0rah5l5nfjs65zxgsgsy3q3vaph6qkr7p41x3arfhjsyma96p0zn"; depends=[ape BioGeoBEARS cluster corpcor deSolve fpc igraph mvMORPH mvtnorm phytools picante pspline pvclust TESS]; }; @@ -2700,7 +2758,7 @@ in with self; { RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; RRreg = derive2 { name="RRreg"; version="0.6.2"; sha256="0cm1r34hqdil3d27670q6a5iixh3lg8r4rzam6mq4zf2fqiwdpb9"; depends=[doParallel foreach lme4]; }; - RSA = derive2 { name="RSA"; version="0.9.10"; sha256="0m9gd1h9ghj6gfwixwy8hhc2625f9mi473zp55zdl5w2q10qk3ij"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; + RSA = derive2 { name="RSA"; version="0.9.11"; sha256="1hsjy755r78my6ib9s9da7mibcjxd5svh2kq0v7a466m60cyfrss"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; RSAGA = derive2 { name="RSAGA"; version="0.94-5"; sha256="0lbvy1p6wcxnn70149wcpmfy2ijk6g37ka452dxm0w0zpg0zga1w"; depends=[gstat plyr shapefiles]; }; RSAP = derive2 { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[reshape yaml]; }; @@ -2726,14 +2784,14 @@ in with self; { RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.1"; sha256="04ghck76jh7w6kgzdszkzjwj9fhyngq13mf9iybavxph5wcy7xgq"; depends=[binman caTools httr openssl wdman XML]; }; RSentiment = derive2 { name="RSentiment"; version="2.2"; sha256="0a4i9mpffmblgzj6qh4kg2x2cv9s93b1pgpfd0z6dh8czdzkdd8j"; depends=[NLP openNLP plyr stringr]; }; - RSiena = derive2 { name="RSiena"; version="1.1-232"; sha256="0qp3bqq5p19bg47m37s2dw8m4q91hnkc2zxwhsgb076q0xvvv9xq"; depends=[Matrix]; }; + RSiena = derive2 { name="RSiena"; version="1.2-3"; sha256="125qkh8j42zm8r4acxw20m6ylq6vksja3qz6zxyyvfd3l2vqb2gy"; depends=[lattice MASS Matrix]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.13"; sha256="03993xck4274r6sxkzxlzcvwviafdb3d7icfn6f0xin4cnj6ry4m"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.2"; sha256="0phkk79ng4r54w3d4ajl505gs8svlzdf1g6q50lhraq2cbllbvgx"; depends=[RCurl]; }; RSocrata = derive2 { name="RSocrata"; version="1.7.3-2"; sha256="17c5g8k5r60h6cgs2383fhi09lnm3kjm3pll4ma66ypjfbffzdpn"; depends=[httr jsonlite mime plyr]; }; RSpectra = derive2 { name="RSpectra"; version="0.12-0"; sha256="0aa33mhzj03gznpza5l5qj94s45imfhrgx52bsa8rq00f93fgaf0"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; - RStoolbox = derive2 { name="RStoolbox"; version="0.1.8"; sha256="1q2gahx8a9dgj8bxhrgl1k2ky5qba1rrrfyszx826mpnlzv72psd"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgeos sp XML]; }; + RStoolbox = derive2 { name="RStoolbox"; version="0.1.9"; sha256="0gra980cmv9xw2dzpqk9vfr78n03i8zcv9pbzmvkjb3x8ln8288h"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; RStorm = derive2 { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.0"; sha256="1lvl9msnd8l9svd9nyivx1cqfmcxirxvfjfj0xv7yjklza8af7w3"; depends=[epiR epitools mc2d]; }; @@ -2742,7 +2800,7 @@ in with self; { RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; RTDE = derive2 { name="RTDE"; version="0.2-0"; sha256="1dj7dsj4256z9m70y2fpcgprxpqbgqxz0dqwn0jl80sj2325f66s"; depends=[]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-5"; sha256="0wnxmzad2q5cpnqmglqh92clsk2c8fngd3gzh8f91alpj6nz69jp"; depends=[GEOmap RPMG RSEIS splancs]; }; - RTaxometrics = derive2 { name="RTaxometrics"; version="2.2"; sha256="0zjpgnxh5mqr4h6v2dw9g6zbrsrdlxzcpc7fx7yakqncwf6gd8b7"; depends=[]; }; + RTaxometrics = derive2 { name="RTaxometrics"; version="2.3"; sha256="02446y86g21i37ycavg0xc1ggxk0k93d38n71fis9fav06lywxx3"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[caTools e1071 glmnet ipred maxent nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; RTransProb = derive2 { name="RTransProb"; version="0.1.0"; sha256="0q5fyf176pzjjdpyc5wpakpfnp48ckcpcparf6n99js2xgxc725g"; depends=[chron e1071 expm matrixStats nnet pracma zoo]; }; @@ -2796,19 +2854,19 @@ in with self; { Rcapture = derive2 { name="Rcapture"; version="1.4-2"; sha256="1nsxy5vpfv7fj03i6l5pgzjm0cldwqxxycnvqkfkshbryjcyl0ps"; depends=[]; }; RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; Rcereal = derive2 { name="Rcereal"; version="1.2.1"; sha256="0nl4p0wqpni16z62610sqcxsz1x6kannl2s1zakpmjkk80pyxlk6"; depends=[]; }; - RcextTools = derive2 { name="RcextTools"; version="0.1.0"; sha256="1pr22bb6vy6fzlmn27nm9m491v32s9dc3pvghdzy4xccq4hqa58q"; depends=[data_table igraph sqldf]; }; + RcextTools = derive2 { name="RcextTools"; version="0.1.1"; sha256="1rrij4ryspff9mn1c3jlzjprnipak7nzlb488pk0ci0awaccp5ga"; depends=[data_table igraph sqldf visNetwork]; }; Rcgmin = derive2 { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; RchivalTag = derive2 { name="RchivalTag"; version="0.0.5"; sha256="03zjw60kjgqfyaaic097fzi72l7sw6cg1236lj3awfqw9z6dfb56"; depends=[akima mapdata maps maptools ncdf4 oceanmap PBSmapping plyr raster rgeos sp]; }; Rchoice = derive2 { name="Rchoice"; version="0.3-1"; sha256="1mx50270vbhvng4vdcc6w94f3l890vjl41y07bqkv40n93fxvffw"; depends=[Formula maxLik msm plm plotrix]; }; Rclusterpp = derive2 { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen]; }; - Rcmdr = derive2 { name="Rcmdr"; version="2.3-2"; sha256="07p22b6kbx2md6h911jzgiin2rds76aizn9d7nd6l4lxp8a76c09"; depends=[abind car RcmdrMisc relimp tcltk2]; }; - RcmdrMisc = derive2 { name="RcmdrMisc"; version="1.0-5"; sha256="11y53wzxflpyq6p187yihs0xpa9nv2rkqhzl70k0mrchvv625bcr"; depends=[abind car colorspace e1071 Hmisc MASS readxl sandwich]; }; + Rcmdr = derive2 { name="Rcmdr"; version="2.4-0"; sha256="0wb2ai48xy67c7pw7k8wx2bn9zxkk8asdsg2rjgw2sh9nrc6kia7"; depends=[abind car effects RcmdrMisc relimp tcltk2]; }; + RcmdrMisc = derive2 { name="RcmdrMisc"; version="1.0-6"; sha256="1afz5j96m1cyiwnbwsndkqhbn986bdbznzd2z64cygnqhb04gs70"; depends=[abind car colorspace e1071 foreign haven Hmisc MASS nortest readstata13 readxl sandwich]; }; RcmdrPlugin_BCA = derive2 { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xkip7q9i57ghgz0rh0pl8nkl7bflf4w1g4zbyjdlcjypyf7lnr8"; depends=[BCA car flexclust foreign nnet Rcmdr RcmdrMisc rpart rpart_plot]; }; RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.1"; sha256="1sdc8ibggz8wpn77g7hddyl7lg86dbyw8qax63p6cqx1pfhb4rra"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr rqubic s4vd superbiclust viridis]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.35"; sha256="1lppf84s9ymdmbyx6p7f2vvkrg7gbap5rf2yf759l0bqjcx954a7"; depends=[Rcmdr]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.36"; sha256="0yj9z9x185p4kqn10hm6mrl6i64dwyaaywzlmbgzd51m1112fp6r"; depends=[Rcmdr]; }; RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.6-0"; sha256="07k9x3mdaqzk1503wjsha9f8bxzw1074i9g7sa16yqz5lwky4lr7"; depends=[FactoMineR Rcmdr]; }; @@ -2844,39 +2902,40 @@ in with self; { RcmdrPlugin_sos = derive2 { name="RcmdrPlugin.sos"; version="0.3-0"; sha256="1r9jxzmf5ks62b5jbw0pkf388i1lnld6i27xhfzysjqdxcnzdsdz"; depends=[Rcmdr sos tcltk2]; }; RcmdrPlugin_steepness = derive2 { name="RcmdrPlugin.steepness"; version="0.3-2"; sha256="1na98sl42896y7yklaj07sn88lj6p6ik7gwy9ffaxzicqaa8plgf"; depends=[Rcmdr steepness]; }; RcmdrPlugin_survival = derive2 { name="RcmdrPlugin.survival"; version="1.1-1"; sha256="0hgf52pk81wii2jfw69csapm4gw7xrp1cm08b9n2d29chgw0gww6"; depends=[date Rcmdr survival]; }; + RcmdrPlugin_sutteForecastR = derive2 { name="RcmdrPlugin.sutteForecastR"; version="1.0.0"; sha256="1np42kizkk572vharki84ka34lr7bdlckn4227bnq2l37c0zsq5y"; depends=[Rcmdr sutteForecastR]; }; RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.9"; sha256="0nacpipaimb1348rhv1rma85gnd38wsg741pz7xpvn347wnnc0wz"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; }; Rcpp = derive2 { name="Rcpp"; version="0.12.12"; sha256="1byyqvlgb2p46p1gv243k73rk69fa8pa4l5m5asmckag2pkb2glz"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.4"; sha256="0xbaamv3bg08ymbmiq6kwh86p17y6qzgydq02syig2a3ykp0042c"; depends=[Rcpp]; }; - RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.8"; sha256="14hw9nrqwcqx2xwam03wfxk07qg648gp0cnk76c4knpr6pmad9sx"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.7.960.1.1"; sha256="0m2c5lb4k3y1xp4bgvy1y5llci0nryyxnlv1nwl9pb1knl9p141a"; depends=[Rcpp]; }; + RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.10"; sha256="08s86ak26zybawry6l6l30k1lakc71k2j58539h70dnrmsd15jna"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.7.960.1.2"; sha256="0kg8vbamaz3413h283f23hzgqkmfpf6fs0vbklmpj0l3ricvp9cc"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; RcppBlaze = derive2 { name="RcppBlaze"; version="0.1.1"; sha256="0r6mzsm2gq77i8cylcvgg7hn0399d3v11wlf89v559vslkv2b2m0"; depends=[BH Matrix Rcpp]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.3"; sha256="0cb04filbr0mymcg891lc0dw2b3fnjmhn8z50xcilb3v72ccrvqg"; depends=[Rcpp]; }; - RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.6"; sha256="0j2sj1yzpqmw6krjfyjklw4pmkdqdsnyvlfqbic0w1h8gs1mq6yb"; depends=[Rcpp]; }; - RcppClassic = derive2 { name="RcppClassic"; version="0.9.6"; sha256="1xhjama6f1iy7nagnx1y1pkqffrq8iyplllcar24vxr0zirgi1xi"; depends=[Rcpp]; }; + RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.7"; sha256="10i9gjkq7grr7s24x62nji87zikabjx0pfrrp6jvm6nbmaxcb8yj"; depends=[Rcpp]; }; + RcppClassic = derive2 { name="RcppClassic"; version="0.9.8"; sha256="1yijzkznn5w883idx8fq5ibw1ag12sswhj98ywflc9nb8q44f9d9"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.1"; sha256="0shs12y3gj5p7gharjik48dqk0fy4k2jx7h22ppvgbs8z85qjrb8"; depends=[Rcpp RcppClassic]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.5"; sha256="1zgz8h7d7jjml9hm164y9wrsgcb1fymp3ipxp235fmk44lbrwpcw"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.3.0"; sha256="0zz9v0f8nnlvhhqv91lkyfblvjnmav84l89mr6vmbqjc2hzqd3n8"; depends=[Matrix Rcpp]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.8"; sha256="15iw2vx6ygb03siq743418whhqvfrxk2i4nqn7p9yg1m3jwafxna"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.2"; sha256="0fg13va124shkyy6g1fwblld1r4vdgxscab64kszyjivkjsb2lw1"; depends=[Rcpp]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.3"; sha256="0ih6lcby6rx0pkzwnd4bxq40cxa3cw9nfrphhhm9q71ng5vj1vrr"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.2"; sha256="0z5sg2jlr465196ws2pqi7j7hfmd7j8xlqqj6841m635cg4q48ba"; depends=[Rcpp]; }; - RcppHMM = derive2 { name="RcppHMM"; version="1.0.1"; sha256="10ssg2558s6cw6f6adzpw76qcsizbllc70y1s8vbhb2xkc26d1cn"; depends=[Rcpp]; }; + RcppHMM = derive2 { name="RcppHMM"; version="1.2"; sha256="0i3n4lca6rbi4lfyv65y6i6xaxb0mzcv999vccl38zhdg42sf1vk"; depends=[Rcpp RcppArmadillo]; }; RcppHoney = derive2 { name="RcppHoney"; version="0.1.6"; sha256="1llbs6x4qcvgnlmnd391s1j9lqvybnnq3d4gjwyyc8vy2i5jr28c"; depends=[Rcpp]; }; RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-6"; sha256="0vjx6azp3sny6nv5k1cs6vk61hmbllqw8mgvi7zn15p7ilmhsyyi"; depends=[BH Rcpp RcppArmadillo]; }; - RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.1.1"; sha256="05kk3yd52zk9hn1jzii4hbrxcy3ak0rr189pqjcyrsfqrxxq87nw"; depends=[Rcpp]; }; + RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.0"; sha256="1q5r4sj3rqs5xdxsmpzcxzs3jyx36siawz6j4ghc37mjb04rrdrl"; depends=[BH Rcpp]; }; RcppNumerical = derive2 { name="RcppNumerical"; version="0.3-1"; sha256="1b88iz0f13w148jrmd3qdkagycs7w3yr82y4zgn123kp17y7vvny"; depends=[Rcpp RcppEigen]; }; RcppOctave = derive2 { name="RcppOctave"; version="0.18.1"; sha256="1b2mwnsx799a86hdpkqy6l1m048g8hqz57l70siybkxnlaib3z0f"; depends=[digest pkgmaker Rcpp stringr]; }; RcppParallel = derive2 { name="RcppParallel"; version="4.3.20"; sha256="1hc325hj214s61694iy4j3ly5zkya25h92hki29n3562qiirpb0g"; depends=[BH]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.3"; sha256="0796g11w7iv3ix1wfm3fh09qq7jki4r4cp1mjagq77igri3xrr9x"; depends=[Rcpp]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.1"; sha256="0c4kb6jnhsnha6139nj9kifg4yb5glj7azs0xwch5052bnl7xhyp"; depends=[BH Rcpp]; }; - RcppRedis = derive2 { name="RcppRedis"; version="0.1.7"; sha256="0x456zrd7qv8iclhdbgl4bwa1bvpirlqx6ywsincj6y0446f13rz"; depends=[BH RApiSerialize Rcpp]; }; + RcppRedis = derive2 { name="RcppRedis"; version="0.1.8"; sha256="05c4c65ayiqyzmkj2mrgwwflgjk54rf9nmb3rhickj16yy9b071q"; depends=[BH RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp]; }; - RcppSMC = derive2 { name="RcppSMC"; version="0.1.5"; sha256="0vzibl1ck0cxl9nzx2829ikxvp2bcndq7h0agzr53i089168rr8s"; depends=[Rcpp]; }; + RcppSMC = derive2 { name="RcppSMC"; version="0.2.0"; sha256="063ds546hd5dfsickiawm5c92sw2kb6n79fqz4gy4hvnbkf00q84"; depends=[Rcpp RcppArmadillo]; }; RcppShark = derive2 { name="RcppShark"; version="3.1.1"; sha256="0dy6zksxcsbzjyz0f147rk2amwjsrjdcyl6jn767pw9ij9vdzh6r"; depends=[BH checkmate Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.1"; sha256="0sa0ndnfm89f8lh3ba6jf3gxaan1g97dhlzbmpkwqj22frgggqjw"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-1"; sha256="09ssggx66b3cyjh7mlc73lax2nfw7agfiph090w1qblaam9jz8sy"; depends=[Rcpp]; }; @@ -2891,6 +2950,7 @@ in with self; { Rd2md = derive2 { name="Rd2md"; version="0.0.2"; sha256="07j1nnsk5nyl8kvgvh9f684g6bhc01jiq1fcmq2pnpx57jdzfbpi"; depends=[knitr]; }; Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.6.2"; sha256="1hkqy97mh68yzkh4bawjrgf1rlhkh3jz2ky84rg3wgz1mkvrrsx2"; depends=[formatR roxygen2]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; + Rdimtools = derive2 { name="Rdimtools"; version="0.1.1"; sha256="0ivap8c71c0gja11k72sl4ma4ka73l8dbm3i802b78rikjn9r8m2"; depends=[Rcpp RcppArmadillo Rcsdp Rtsne]; }; Rdistance = derive2 { name="Rdistance"; version="1.3.2"; sha256="1ajmr58lgc74727jiydfrh4j6ra7vq8hp8nm3l2s3g2mc8n1mqk5"; depends=[]; }; Rdpack = derive2 { name="Rdpack"; version="0.4-21"; sha256="15i2xby0jys9pxyy8c19najxyh98mbsw7pll14p69rfsx8s07kbn"; depends=[bibtex gbRd]; }; Rdrools = derive2 { name="Rdrools"; version="1.0.2"; sha256="1xn46lp6kgj6bns5nwjx4s8a3iif1g38iwf58hsrbqjhyygqvdzv"; depends=[Rdroolsjars rJava]; }; @@ -2899,7 +2959,7 @@ in with self; { Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; }; Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; }; ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; - ReIns = derive2 { name="ReIns"; version="1.0.4"; sha256="1dyj95grwwb2nd0xa3631h3ahqi9zw08jr406aq8hq51wd4aq054"; depends=[doParallel foreach Rcpp survival]; }; + ReIns = derive2 { name="ReIns"; version="1.0.5"; sha256="1p6m3xkkhh2jj8h2lphwirk9zzbjv4gvag2bpypan8c6cic8rd9a"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; RealVAMS = derive2 { name="RealVAMS"; version="0.4-0"; sha256="1byh7in3bpfgdwfxp15334h167bvrcfj0cdswqy3yd81l9g2ickn"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; @@ -2930,7 +2990,7 @@ in with self; { RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; - Rfast = derive2 { name="Rfast"; version="1.8.2"; sha256="1nfdcph66d3kb8gjq5ik5lf1g0m5j87zjhwq8f3ma16w1h3cm487"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; + Rfast = derive2 { name="Rfast"; version="1.8.4"; sha256="1x63bndlcvjyndqmd2n7jf2bmp317rpnxldd4y3dw5xdqvgj8pgb"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfit = derive2 { name="Rfit"; version="0.23.0"; sha256="1gxxipbh7mskrqwrpk1gf1dn8mp3l1v4hgmzii44bppffnxs7slp"; depends=[]; }; Rfmtool = derive2 { name="Rfmtool"; version="1.2"; sha256="1q359574fspwxy1lmlzfqk0cg3qih8jzh3rk74qr22jw0sp7bcyw"; depends=[]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; @@ -2943,6 +3003,7 @@ in with self; { RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.15-148"; sha256="1carylfz9gafradbdyg7fz2bypr7n72fbm8vhyiinmp0k4s5ipvc"; depends=[]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; + Rilostat = derive2 { name="Rilostat"; version="0.2"; sha256="1ziy0g2piz4z37gnl0xdi486ig6p9b39v0qyiwcbdn03srizbj3a"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble xml2]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; Risk = derive2 { name="Risk"; version="1.0"; sha256="1i42xcc699syj108mvgklwb30wkf9c9jrg5rmd2ypnqk9mnyg2fg"; depends=[]; }; RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.1"; sha256="1kn0vb4nhm3bxlmk5y2nl5m7a7hdvz3nz0yp8rdigpl6b2dp79w1"; depends=[MASS nloptr quadprog]; }; @@ -2968,7 +3029,7 @@ in with self; { RnavGraph = derive2 { name="RnavGraph"; version="0.1.8"; sha256="1fwzfy41gdr1aw1wg6dw04mxwwpp5s9x2inxyq3bc9s8bm1rlxih"; depends=[graph rgl scagnostics]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.3"; sha256="1mrh0p2ckczw4xr1kfmcf0ri2h2fhp7fmf8sn2h1capmm12i1q8f"; depends=[]; }; RndTexExams = derive2 { name="RndTexExams"; version="1.4"; sha256="18zmdfq234k4bjj5rz6zjlkiyndbj5v2irjfl3w66vz38lk8sf6v"; depends=[CopyDetect data_table stringi stringr]; }; - Rnightlights = derive2 { name="Rnightlights"; version="0.1.1"; sha256="0k5pc6jd249n333w0nwlp64ah0823is9ryw1yfdibvhh2a8fxfgk"; depends=[cleangeo data_table doParallel dplyr foreach gdalUtils lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings sp stringr xml2]; }; + Rnightlights = derive2 { name="Rnightlights"; version="0.1.2"; sha256="15jpb4rpnw4pm58101hvb7i981cwgzagp89qpvgfys9fcjlj7zxy"; depends=[cleangeo data_table doParallel dplyr foreach gdalUtils lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings sp stringr xml2]; }; RobAStBase = derive2 { name="RobAStBase"; version="1.0.1"; sha256="17vfi0ia3z3s6x7frjk1alcgb0h73gwxy2n11kfl0k8w2fxgk49l"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.0.2"; sha256="1lyp2y38jnwv8ggrv9pdzprpf2gs62w1mpzwcqcbrmy7fzjsym0b"; depends=[]; }; RobLox = derive2 { name="RobLox"; version="1.0"; sha256="0y193xai0mfwpm6zhxgy21h4yrlqrpvwx84bj4xnr8ql87wznh7q"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; @@ -2987,7 +3048,7 @@ in with self; { Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; }; RoughSetKnowledgeReduction = derive2 { name="RoughSetKnowledgeReduction"; version="0.1"; sha256="0zn6y2rp78vay9zwijpzhjpyq1gmcsa13m9fcsxkd1p2c8g5rbmf"; depends=[]; }; RoughSets = derive2 { name="RoughSets"; version="1.3-0"; sha256="08yz19ngipqpzfam6ivwsfnbg8ps2wwyi6djprmd7kfj0n43ab62"; depends=[Rcpp]; }; - Rpdb = derive2 { name="Rpdb"; version="2.2"; sha256="0gf6qab05a3ky8skbbjiadizi1gs4pcw3zp25qj5gn82lb6382pd"; depends=[rgl]; }; + Rpdb = derive2 { name="Rpdb"; version="2.3"; sha256="0zy5f7bli6ppc9giwf8845mzjcv54r2sqb8hxwgbn9k6rjlszgi8"; depends=[rgl]; }; RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; Rphylopars = derive2 { name="Rphylopars"; version="0.2.9"; sha256="19y0j5vh82sa9jigylxhv0s0hgjyhx3xq4blvk55jhpj8v7iyiky"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; @@ -2995,7 +3056,7 @@ in with self; { Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; Rramas = derive2 { name="Rramas"; version="0.1-4"; sha256="191rm2ylvf3ffc9i4wpjvfbsinmw7s1m0wcq24j4qs4fxg8qqzyq"; depends=[diagram]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-14"; sha256="18ry07pi9iwskbxcimvp91fgpvrlaf44z0hp7k90dnyaa8qpbwjx"; depends=[]; }; - Rsampletrees = derive2 { name="Rsampletrees"; version="1.0"; sha256="1qq7z7wxb933wvy62zz2vxmpiz0441v01ravhkrmz70ppq5jnlpn"; depends=[ape haplo_stats Rcpp]; }; + Rsampletrees = derive2 { name="Rsampletrees"; version="1.0.1"; sha256="1npv854iasvnrx51vgpda356dqwg7lgnx0d1lm174a0423cj3kmh"; depends=[ape haplo_stats Rcpp]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rserve = derive2 { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; @@ -3016,7 +3077,7 @@ in with self; { Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.23.0"; sha256="1qkml3n0h1z59085spla0ry1wl42c1ljg9nh2sxv6mnhxygm6aq1"; depends=[]; }; RunuranGUI = derive2 { name="RunuranGUI"; version="0.1"; sha256="0wm91mzgd01qjinj94fr53m0gkxjvx7yjhmwbkrxsjn6mjklq72l"; depends=[cairoDevice gWidgets gWidgetsRGtk2 Runuran rvgtest]; }; - Rvcg = derive2 { name="Rvcg"; version="0.16"; sha256="0629fl4bq15mcb9kxiqsgllqgygxx0xn50849akx0rn72y7jp5v0"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.17"; sha256="0ssmi8mqmq82qrw0hzrmfqpwnkxwdlfa6j049r4l3gn28cfqhg1j"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2017-7.18"; sha256="14jzwqwi1zd8sg1vb18hgvbvsax38hdqjy540qqhn2xb4z8qx3hy"; depends=[optextras]; }; Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; Rwave = derive2 { name="Rwave"; version="2.4-5"; sha256="1q80759382yig5gmjd83qafavhbbh7bbbgil8qha91xfs27m45br"; depends=[]; }; @@ -3058,6 +3119,7 @@ in with self; { SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; SCMA = derive2 { name="SCMA"; version="1.2"; sha256="0z4f8p1d0ry35g5a13blc8w73vid7nwdn2w9d3i0nfb05fj7i5qf"; depends=[]; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; }; + SCORPIUS = derive2 { name="SCORPIUS"; version="1.0"; sha256="1ipqscj20qkqik5gsiramsv18ld4k5g9w0gllf1izjimrlrnqc6n"; depends=[dplyr fitdistrplus ggplot2 magrittr MASS mclust pbapply pheatmap princurve purrr ranger RColorBrewer Rcpp reshape2 testthat tidyr TSP]; }; SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; }; SCRT = derive2 { name="SCRT"; version="1.2.1"; sha256="09d9ghviskg1ifjgqcgdlcp1p3w09bpkixvbxqr4354rq31kwf21"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.2.1"; sha256="1ixy4ybw3c9w6q8csjv27r5f9x6988zrbr2a3yybhyw8xmkszc4v"; depends=[]; }; @@ -3092,7 +3154,7 @@ in with self; { SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; SIDES = derive2 { name="SIDES"; version="1.11"; sha256="1gmhfj44qdklsdklmg8p35lmvlgla8i881i3iaziblslyscbyw9f"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SII = derive2 { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; }; - SIMMS = derive2 { name="SIMMS"; version="1.0.2"; sha256="1phvphk7ir9zw77ycm27y4fin6wyxppsmb1cnm4xc83v1yq7lql4"; depends=[glmnet MASS survival xtable]; }; + SIMMS = derive2 { name="SIMMS"; version="1.1.0"; sha256="05qwcc3l4b54wn51y10x03yk7sp1habnpmqzn304kz3lv3s5whdf"; depends=[glmnet MASS survival xtable]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; SIS = derive2 { name="SIS"; version="0.8-4"; sha256="1bhpj0l28804f48nc68xg0cfbpzplr2n32ccfs4w9g2m7lgarg07"; depends=[glmnet ncvreg survival]; }; SISIR = derive2 { name="SISIR"; version="0.1"; sha256="08lw9y38j5qq00m2vcxsac97lg14j4w1y6607vw8isrb3qb5db9z"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; @@ -3108,7 +3170,7 @@ in with self; { SMFI5 = derive2 { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[corpcor ggplot2 reshape]; }; SMIR = derive2 { name="SMIR"; version="0.02"; sha256="02q8m5m8lcfrpi78p3kajkps8wiir3jwyqc54j9vfx8aj6mk1v71"; depends=[]; }; SMLoutliers = derive2 { name="SMLoutliers"; version="0.1"; sha256="10frs7wcyn368m7fvw2f1cyd0xqr6sv5jziixnyvr8q5fadyl2p0"; depends=[]; }; - SMM = derive2 { name="SMM"; version="1.0"; sha256="0qg6c553z1f3w6s84mnql9w4p7ss8xy7fijnrhn2wdh0j4yp18bf"; depends=[DiscreteWeibull seqinr]; }; + SMM = derive2 { name="SMM"; version="1.0.1"; sha256="0g2blwcir0sxvqrivcyn9a8ssx34834lgcwrjwb6kcrq224dchws"; depends=[DiscreteWeibull seqinr]; }; SMMA = derive2 { name="SMMA"; version="1.0.1"; sha256="0ld8jjh67iw5w5cmb2gb899269apjydgqjsnn5hq5lzqjilpzzl8"; depends=[Rcpp RcppArmadillo]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; }; @@ -3119,15 +3181,15 @@ in with self; { SNPassoc = derive2 { name="SNPassoc"; version="1.9-2"; sha256="113byj8zbg6xyxb1qzm76sqfyk3fap0sd90691zzm1x2pbfnb3mh"; depends=[haplo_stats mvtnorm survival]; }; SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; SNPtools = derive2 { name="SNPtools"; version="1.1"; sha256="0l29kiqz4048x7amxx1qzkaw2xnd6lpdsdp5nq3rck9amx2hw64a"; depends=[Biostrings GenomicRanges IRanges Rsamtools]; }; - SNSequate = derive2 { name="SNSequate"; version="1.3.0"; sha256="0j0cj6c3j1pqh67nxz3wrwr0cf4hj44zqh2k7c1jc5cbldixkhpn"; depends=[DPpackage emdbook knitr magic plyr progress statmod]; }; + SNSequate = derive2 { name="SNSequate"; version="1.3.1"; sha256="1w6yai79996pgg98skfb63kha8rqjzn751nmxg961rc4id1g8ysn"; depends=[emdbook knitr magic plyr progress statmod]; }; SNscan = derive2 { name="SNscan"; version="1.0"; sha256="1s7dxi7faih0phx5wk2xrrzhvfwicq3h2cg8x2klwbrslin973lz"; depends=[igraph poweRlaw Rmpfr]; }; SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; SOD = derive2 { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dvc5apdzs5hpf6xrlfg863pk"; depends=[Rcpp]; }; SODC = derive2 { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic MASS ppls psych]; }; SOFIA = derive2 { name="SOFIA"; version="1.0"; sha256="1jlaggxa2nz2r5yb2xmf0dh5wmxfdk6xwn0l3nwsqh82vyxhp7l9"; depends=[png]; }; - SOIL = derive2 { name="SOIL"; version="1.0"; sha256="1bx399530cfh7k6p8jw4irar3q1zazvpiqcb0k4q02s2ygx3z5p6"; depends=[brglm glmnet MASS ncvreg]; }; + SOIL = derive2 { name="SOIL"; version="1.1"; sha256="0dvfh84xjzald51kmdb546par2rbjdn3nys9y9w7cvafv2lc5yj9"; depends=[brglm2 glmnet MASS ncvreg]; }; SOLOMON = derive2 { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; }; - SOMbrero = derive2 { name="SOMbrero"; version="1.2"; sha256="1pvgxy22rha4nw0kcp8635hw5gl8l6j2c1ylbf5mvqb4c4pzpg09"; depends=[igraph knitr RColorBrewer scatterplot3d shiny wordcloud]; }; + SOMbrero = derive2 { name="SOMbrero"; version="1.2-2"; sha256="1y1shgzsl922id3r7yrc5715zg5l6pxmim969h3ba32ry6mr0sr8"; depends=[igraph knitr RColorBrewer scatterplot3d shiny wordcloud]; }; SOPIE = derive2 { name="SOPIE"; version="1.5"; sha256="0isvb2vzzpn57bq0ix2pfaqdnl5z8qk6v6fvf15vnxcqg2sm63q5"; depends=[ADGofTest circular]; }; SOR = derive2 { name="SOR"; version="0.23.0"; sha256="0djmz57g23xpzv6p8i71f3zrsc6xdgqkbcvn5cbx9m78n31ipkm5"; depends=[Matrix]; }; SOUP = derive2 { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; @@ -3136,10 +3198,10 @@ in with self; { SPADAR = derive2 { name="SPADAR"; version="1.0"; sha256="0xzhcy5nglwx9j2jkm3i9xj1iw1y9wbf6rwfjyhpiwwq6qn8mn5r"; depends=[mapproj RCEIM]; }; SPARQL = derive2 { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; - SPAtest = derive2 { name="SPAtest"; version="1.1.1"; sha256="0mi4q76r2ddvh391689gvk18zc528kd7vg5f3b16q40ic5wyjpbj"; depends=[]; }; + SPAtest = derive2 { name="SPAtest"; version="2.0.0"; sha256="1285ayvx1rfjd7gn3gxqbc6rjclp41rdsy47r0zijipj0y0b99wp"; depends=[]; }; SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; - SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.4"; sha256="19xcmbqkd94z4zvqdz64l9g6lkld3wd8ap0bh57wk2s304px09sv"; depends=[]; }; + SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.5"; sha256="1m8als33k8db82pr9k8n4jk6i1dqimd9klw8xawwz7gzk1h31fsr"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; }; SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; @@ -3161,6 +3223,7 @@ in with self; { SSDM = derive2 { name="SSDM"; version="0.2.3"; sha256="177lh4qf9b7gwi911mhy8ypfqlpl7yhl60pznhwcpynk9iqp2hzx"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard shinyFiles sp spThin]; }; SSDforR = derive2 { name="SSDforR"; version="1.4.15"; sha256="0vjfzjs2bhxzavcnlz5lq5f96pp2sw5zdzlz3vivxbmvzp50kbr7"; depends=[MASS psych TSA TTR]; }; SSL = derive2 { name="SSL"; version="0.1"; sha256="0fy6svf8xfni72bpsg8a5wr8ly46srhfixk8866lrcsp8pb6mqcd"; depends=[caret e1071 klaR NetPreProc proxy Rcpp xgboost]; }; + SSLASSO = derive2 { name="SSLASSO"; version="0.0-1"; sha256="045w4j9rqqmkp1am838isa9an30hlvc46w9fkpl0q6npk6fl9rws"; depends=[]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; SSN = derive2 { name="SSN"; version="1.1.10"; sha256="0fhwshl6vwf9cvbg8j284i27vayjrslk5hpyvrby390jma9klk4i"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; @@ -3169,7 +3232,7 @@ in with self; { SSsimple = derive2 { name="SSsimple"; version="0.6.4"; sha256="0p7d4hx7mhn5myq8ajcij6hhg79rjxigk5v8z93yfdw4gjcb5wad"; depends=[mvtnorm]; }; STAND = derive2 { name="STAND"; version="2.0"; sha256="07wrpmvk0jjlghvrb37xyai48vgzj0fby8y09qdxsxdlgwqg1f3s"; depends=[survival]; }; STAR = derive2 { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[codetools gss mgcv R2HTML survival]; }; - STARTS = derive2 { name="STARTS"; version="0.0-9"; sha256="1r93gy1044sn4cdjqfbqc9pcrq63135rm8fvvy0jjmqqmx5xigi2"; depends=[]; }; + STARTS = derive2 { name="STARTS"; version="0.1-51"; sha256="1gpnhwmlwc742pg8c7ya9yn591xryi6cq631q5c4180d8s424gsr"; depends=[CDM LAM sirt]; }; STARTdesign = derive2 { name="STARTdesign"; version="1.0"; sha256="1q61l3v8ishzax3ppy0pz4ky4l46472l6j36hjlsa8cl01ik1zjf"; depends=[Rcpp]; }; STB = derive2 { name="STB"; version="0.6.3.1"; sha256="0fj1cfxqhijpxl41z799zd7id95jsb84ylrbqzrd1jlp80plyw83"; depends=[Matrix VCA]; }; STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; @@ -3185,6 +3248,7 @@ in with self; { SafeBayes = derive2 { name="SafeBayes"; version="1.1"; sha256="09bhd3z9ia2mvpn1h0hil00j6cm4x9y9ymxc3gj8wd4ybdi3jqlm"; depends=[]; }; SafeQuant = derive2 { name="SafeQuant"; version="2.3.1"; sha256="0rgi0ij33sdvkpmjynfmsj0f29kl9l9ylsqckg5x4v49m6mzq1yh"; depends=[Biobase corrplot data_table epiR gplots limma optparse seqinr]; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; + SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.1.0"; sha256="0wx1rfyf753wppjwwb3l1zpmg4b2mwnwjcw45yzav54yxaszy2v3"; depends=[]; }; SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; }; SamplerCompare = derive2 { name="SamplerCompare"; version="1.2.7"; sha256="149ipraps9dngmvpy5w5q9a1zgnwqblhawrk6184g52ij33jv4ji"; depends=[mvtnorm]; }; @@ -3219,6 +3283,7 @@ in with self; { SemiPar = derive2 { name="SemiPar"; version="1.0-4.1"; sha256="05gnk4s0d6276rmnyyv6gy1wpkji3sw563n8l7hmi9qqa19ij22w"; depends=[cluster MASS nlme]; }; SemiParSampleSel = derive2 { name="SemiParSampleSel"; version="1.5"; sha256="0apbg8sddz2ab9170wvf7p6cgawvp4w13r97r5q7p3hx2hylb8sw"; depends=[CDVine copula gamlss_dist magic Matrix matrixStats mgcv mvtnorm trust VGAM]; }; SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; }; + SensMap = derive2 { name="SensMap"; version="0.3"; sha256="1x15gch688249ly6qw9wwl9dg72j815f03v964pffajki0m67ban"; depends=[doBy factoextra FactoMineR fields ggdendro ggfortify ggplot2 glmulti lattice MCMCpack mgcv plotly shiny]; }; SensMixed = derive2 { name="SensMixed"; version="2.0-10"; sha256="0r2lga40xr782n1viyxc4wn9gzgm7g2ick45pfnkgq6m60wx9rfh"; depends=[doBy ggplot2 Hmisc lme4 lmerTest plyr reshape2 shiny shinyBS xtable]; }; SensitivityCaseControl = derive2 { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; }; SensoMineR = derive2 { name="SensoMineR"; version="1.20"; sha256="1qw97cixndg2h29bbpssl0rqag3w8im4nm9964lr7r012y5wdqhx"; depends=[cluster FactoMineR KernSmooth]; }; @@ -3239,16 +3304,18 @@ in with self; { ShapePattern = derive2 { name="ShapePattern"; version="1.0.1"; sha256="18jzs0sq21qhldm86mgx7yb9kl473vv1aljl9hm4560xy5pd5fnb"; depends=[rgdal rgeos sp]; }; ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.3"; sha256="1vvfl1ldrn0l9w38hx0hhszvj5a2dpmfl6ljzw7f0ji181lrx96m"; depends=[coneproj raster rgdal]; }; SharpeR = derive2 { name="SharpeR"; version="1.1.0"; sha256="0qhvpwv81jznqfzm7xysm051ckv8ilq7zhsysxc7wripnlj01c4m"; depends=[matrixcalc sadists]; }; + ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; }; ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.2.3"; sha256="1l7x1aw1nfjcwv3b47x3hr5yvdhbxyn8gxipwx5asr6gc62jxlqf"; depends=[corrplot CTT data_table deltaPlotR difNLR difR DT ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyjs stringr WrightMap xtable]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.2.0"; sha256="1ybd8vm69y50lj2mkmcdyplxb689xfg4spbl129v8hlvhw69mzmy"; depends=[]; }; + SiER = derive2 { name="SiER"; version="0.1.0"; sha256="1ng6vnh30z6z1nvclsdzc9gdbrsrb2kqdqvs6fwm0j1zqlk12x0y"; depends=[]; }; SiMRiv = derive2 { name="SiMRiv"; version="1.0.1"; sha256="17aja5blbslj6pzypxk2nx91lnqdq2z5kn0ss9xfd3x4h9hvw81y"; depends=[mco raster rgdal sp]; }; SiZer = derive2 { name="SiZer"; version="0.1-4"; sha256="0kiwvxrfa2b49r2iab5v2aysc2yzk5ck3h41f2hr0vq5pdnz0qy5"; depends=[boot]; }; SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.5"; sha256="1i0zhawv0dl764ciyyr3r4sbql2xhhks2r8vbya10wnzyqipxmmb"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; }; SignifReg = derive2 { name="SignifReg"; version="1.0"; sha256="1360892wy0qc6dch3753s4a17l3pcijjmxd34zqvzl9534arlsxd"; depends=[]; }; - Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="3.7"; sha256="0g45mi7hd64h2ja215g61qa5v47vqlbfbbs15dsmlv4yygy1n2fx"; depends=[ks MASS misc3d rgl scatterplot3d]; }; + Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="3.8"; sha256="07zg8azj9giay460x0y4cmmipl22cbfc2ba3hi3szmmnfn6z21i7"; depends=[Deriv MASS rgl scatterplot3d]; }; SimComp = derive2 { name="SimComp"; version="3.2"; sha256="04rmpxasaa888p6f0rhhpvpqc39fppdkcwbq5sxcslx7bwc9w9z8"; depends=[mratios multcomp mvtnorm]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.5.0"; sha256="10afb3k4rvsmgfx6m1csb0pvnjba1d896llfh3ksmjzxglmvslgw"; depends=[evd]; }; SimDesign = derive2 { name="SimDesign"; version="1.7"; sha256="0n71irxa2yjy3hx3138r2fjnwn46ihbbq235vk7h9sxdy37ksp1f"; depends=[foreach pbapply plyr]; }; @@ -3282,6 +3349,7 @@ in with self; { Smisc = derive2 { name="Smisc"; version="0.3.6"; sha256="0knrgq6831rwr48880kvsmrl6c943nw3nkzds0sh63ljw0dp5ja7"; depends=[doParallel plyr]; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; }; SmoothHazard = derive2 { name="SmoothHazard"; version="1.4.1"; sha256="147wjxgxnijpmixrfyl8kd4scz2w1xb8dcwvpr60zg32nv22g17r"; depends=[lava mvtnorm prodlim]; }; + SmoothWin = derive2 { name="SmoothWin"; version="1.0.0"; sha256="19yd3gnanv8q8ab0x8ds61rznm5w71dri0liknylikiqgbqwxrcn"; depends=[msgps]; }; SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.6"; sha256="1p15k57hi31i3p6v63v9s7hi1w9kb4aqjcgz405jk4klsifzw8va"; depends=[jsonlite Rcpp stringr]; }; SnowballC = derive2 { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; @@ -3299,11 +3367,13 @@ in with self; { SoyNAM = derive2 { name="SoyNAM"; version="1.3"; sha256="128iq8rrj6nm8zdqrv17gsjxzdsfashgzk1k7lnw38w04a2g05zs"; depends=[lme4 NAM reshape2]; }; SpATS = derive2 { name="SpATS"; version="1.0-5"; sha256="0nxv6mnbwd1a9yh883dqhcz6qnjznqc7q6c43s23lggj9wmjlzwj"; depends=[data_table fields plot3Drgl spam]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; - SpaDES = derive2 { name="SpaDES"; version="1.3.1"; sha256="0a2s0smd0m3dmrjl88hm7dnkv6src96v00bhllc42sq6vq81iwsf"; depends=[archivist chron CircStats data_table DEoptim DiagrammeR digest dplyr DT ff ffbase fpCompare ggplot2 gridBase httr igraph lazyeval lubridate miniUI R_utils RandomFields raster RColorBrewer rstudioapi shiny sp stringi stringr]; }; + SpaDES = derive2 { name="SpaDES"; version="2.0.0"; sha256="1fbf40qyb0nhvk1sdzxwn7g3p73v325z9mkij1mzgjyprb91i9k9"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; }; + SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.0"; sha256="0jggwywzs5i9v3xvyqk6j39mwp45zjhh145pb972yrdivxlw6vhc"; depends=[devtools magrittr miniUI rstudioapi shiny SpaDES_core stringi]; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="0.1.0"; sha256="17gr386xxp22i5ln7grd1dbfxmkwfs0fnhyd7v40lmwdknj7myl7"; depends=[chron CircStats data_table DEoptim DiagrammeR digest dplyr fastdigest fpCompare httr igraph lazyeval lubridate quickPlot R_utils RandomFields raster reproducible sp stringi]; }; SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.1.0"; sha256="178xcvh5m5hkyjiqq6bgk6a7r7nrfd4fv5r6g27b26inxlpxc2bg"; depends=[bit checkmate CircStats data_table fastdigest fastmatch ff ffbase fpCompare magrittr quickPlot RandomFields raster Rcpp reproducible sp]; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0"; sha256="1l204b8yd11pxwcb026xy39f4lps4sqk6mml8cybnjch8clk9djc"; depends=[Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; - SparseDC = derive2 { name="SparseDC"; version="0.1.5"; sha256="15hgcpqr3hmbpm65d15d1lcrwi2vq38pz07rrr4rgr3z2rd7f36g"; depends=[]; }; + SparseDC = derive2 { name="SparseDC"; version="0.1.12"; sha256="158c2y3qc0b9nnk437hqx18wcx9k4na62hkplyy809j4c6fkk4n0"; depends=[]; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; SparseLearner = derive2 { name="SparseLearner"; version="1.0-2"; sha256="1qxycxpch2m2yyk97210gdzsizhlinc0hkhk5ak00rdgkrsxxc0k"; depends=[glmnet lqa mlbench qgraph RankAggreg SIS SiZer]; }; @@ -3313,11 +3383,12 @@ in with self; { SpatPCA = derive2 { name="SpatPCA"; version="1.1.1.2"; sha256="0v694bmfgwhpz2072f7gshqasd2vywvrbk5ncwq74xk5qrcpx9i7"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-2"; sha256="1nyxxwvlnhz78pw31dqijp1crlar5nak5934s4h0a4sajv9syif2"; depends=[]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.2"; sha256="172i4khjb2fh818bq7wdfdm79fwxjwi60nqfj69dgbgcaww55ffr"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; - SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.2"; sha256="1f59da2r36vpz8caq7jncmlq8j4l9g5g5v5a5x4abdm750g6n7mz"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; }; - SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-3"; sha256="0rsfrsa4wqmrxc7vybijvzadhshpx3kmivfmq656acqj94g0qnpg"; depends=[fields maps]; }; - SpatialNP = derive2 { name="SpatialNP"; version="1.1-1"; sha256="108gxk0gbbjck9bgxvqb9h216ww21lmh2by0hrhzwx5r63hhcbmd"; depends=[]; }; + SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; }; + SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-5"; sha256="0p56h2dbdgbxzvfrdjnbr1yxr3wrlsrfgfgk4j8gf4nb4j6mrbiz"; depends=[fields maps]; }; + SpatialFloor = derive2 { name="SpatialFloor"; version="1.0.1"; sha256="0bb7crfqnfswr01dhv374iwxs36sxajs4y5qi1y6x3jjwach6nbg"; depends=[fields reshape2]; }; + SpatialNP = derive2 { name="SpatialNP"; version="1.1-2"; sha256="048zzyy3hav8qg0zad2fsv5z1avdppwwdcv0rc6j635wzhdmsl1j"; depends=[]; }; SpatialPack = derive2 { name="SpatialPack"; version="0.2-3"; sha256="1gs0x3wj3hj663m6kszwhy3ibcx0lrslr127miy1rhz8683ij71c"; depends=[]; }; - SpatialPosition = derive2 { name="SpatialPosition"; version="1.1.1"; sha256="1fbch16qmp8xnlkl7crydn1rh5gj49zlii6c9va5l7zp5wf8cl87"; depends=[raster rgdal rgeos sp]; }; + SpatialPosition = derive2 { name="SpatialPosition"; version="1.2.0"; sha256="140fg3bjj7383nrdbgnk9lccj4yjq65rkprqpmf4q0mwbc89mmqc"; depends=[raster rgdal rgeos sp]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.2"; sha256="0n8l4k0dm9gwirhxwrajv5gx502px9qzlqi6skzx0k32hmymnazh"; depends=[Rcpp RcppArmadillo spBayes]; }; SpatialVx = derive2 { name="SpatialVx"; version="0.6-1"; sha256="1yscz5w6ydh87qh4ncgn6br49pzg08nqgx95m5bmydqx2r74h9jg"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[MASS Matrix]; }; @@ -3325,10 +3396,10 @@ in with self; { SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; }; SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-2"; sha256="0dnya9mzkf48clp51jrnkz6lc4fps38nn3lap7n2wcp3dvbvdycg"; depends=[Rcpp RcppArmadillo]; }; SpectralMap = derive2 { name="SpectralMap"; version="1.0"; sha256="15689023k9jzg3s7bx5m97dmn00z876amqhxsxksy8n8wf09wr57"; depends=[fields scatterplot3d]; }; - SphericalCubature = derive2 { name="SphericalCubature"; version="1.3"; sha256="195is72nj1vbhdx3yqmklmc9hqaaxvipgmcxszgvnqdv5bsiypgw"; depends=[abind cubature mvmesh SimplicialCubature]; }; + SphericalCubature = derive2 { name="SphericalCubature"; version="1.4"; sha256="14xrxhmhavz82rcixnyharnbrvdzs6rh7gbxihaxh431d90w2q3k"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; - SqlRender = derive2 { name="SqlRender"; version="1.3.7"; sha256="15jp608bnnqrv7x4dnwi7hvnhxxpykfpavb8ynrlp9r6n6d3qp71"; depends=[rJava]; }; + SqlRender = derive2 { name="SqlRender"; version="1.4.3"; sha256="1xv71qx1wxfbczrqxh1zrywzwwvjjd2yrwl62cg5hclnbivn4435"; depends=[rJava]; }; StAMPP = derive2 { name="StAMPP"; version="1.4"; sha256="0rmp5l50dkkldq9xc1abhdxjhbwlqk3i3g0d8w3xissidnz5n31b"; depends=[adegenet doParallel foreach pegas]; }; StMoMo = derive2 { name="StMoMo"; version="0.4.0"; sha256="0zkcp19a76dm29fba5r96dxly709sic2k5p9hzc70cvwjhwhfr7v"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; }; StMoSim = derive2 { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[Rcpp RcppParallel]; }; @@ -3336,6 +3407,7 @@ in with self; { StableEstim = derive2 { name="StableEstim"; version="2.1"; sha256="0agi3bfp1xy5pfxxb9ib6xn434agmplgn7kg47nhbh47vf57vang"; depends=[fBasics MASS Matrix numDeriv stabledist testthat xtable]; }; Stack = derive2 { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; }; StagedChoiceSplineMix = derive2 { name="StagedChoiceSplineMix"; version="1.0.0"; sha256="1008gm6zv5k8lpv0qg42qjriajmx0n4kshjh76mvx91dpi788ivh"; depends=[plyr]; }; + StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.0"; sha256="0gjjyxw9413xi8vx9fvw2mlz90br6viws1qzyvy4gxc5mp2bsmaw"; depends=[]; }; StanHeaders = derive2 { name="StanHeaders"; version="2.16.0-1"; sha256="0i1gq32ys7iwgbdrwc86ww8kj5aqc7jbl663dynackb7wmqwlb7r"; depends=[]; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive2 { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; }; @@ -3356,7 +3428,7 @@ in with self; { Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.1"; sha256="0q6k90if74320mrs2ccq2izynylr8zakciwbc2c6ms0v57aalwic"; depends=[]; }; StratSel = derive2 { name="StratSel"; version="1.2"; sha256="11dkhyh0xgl23f9ksxcjl6bqfhwm6k6i1chgx23dvjifbm6s5s5p"; depends=[Formula MASS memisc mnormt pbivnorm]; }; - Strategy = derive2 { name="Strategy"; version="1.0.0"; sha256="1s89rl6h68sn8px3g7bhhrwmn6k4kmdqhiz0d39xr3kgpfpvi5i2"; depends=[xts zoo]; }; + Strategy = derive2 { name="Strategy"; version="1.0.1"; sha256="0phja1r0qfvcswvw5w1x6ny86p84wkqb029fdqgw10djdm9xp0f2"; depends=[xts zoo]; }; StratifiedBalancing = derive2 { name="StratifiedBalancing"; version="0.2.0"; sha256="0iwzvschncb2vrmsawb6i94shn2cjbkph854x1z4ykr6ddw411g2"; depends=[plyr]; }; StratifiedRF = derive2 { name="StratifiedRF"; version="0.2.2"; sha256="0a5djia6xacs17nnr5knr1acwzicrffz73q9nvnhdmihazq8v27d"; depends=[C50 dplyr]; }; StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.2"; sha256="1sv30i7armk7jhxg5x9lh0r9qq3xixn1k2h0q89halkh1yraal8a"; depends=[chron maptools zoo]; }; @@ -3365,7 +3437,7 @@ in with self; { StructFDR = derive2 { name="StructFDR"; version="1.2"; sha256="00h3mx7kf01snngkcarhyidqiycvnjhcs81x3kprgp6597md7ph1"; depends=[ape cluster dirmult matrixStats nlme]; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; - SubTite = derive2 { name="SubTite"; version="1.0.1"; sha256="0zf65ds771831xlrnyvknpis81ns0p29yr7w1a7ifczn17wmx796"; depends=[Rcpp RcppArmadillo]; }; + SubTite = derive2 { name="SubTite"; version="1.1.1"; sha256="07d5v6gzbgkp0svlr7ff73q1w07znkyawyhb0j1igkjy0jq1h648"; depends=[Rcpp RcppArmadillo]; }; SubVis = derive2 { name="SubVis"; version="2.0.2"; sha256="1nb3zgm6i5lwfwdrn8mk3wkg8a4ldfvs27ai8v46l4316qc1fa9p"; depends=[Biostrings shiny]; }; SubgrpID = derive2 { name="SubgrpID"; version="0.11"; sha256="1by23gdkbls7l5xa9nl055nbm0d3138pmfmasqmcy42h62wf7dw6"; depends=[AIM ggplot2 glmnet Matrix rpart survival]; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; }; @@ -3405,7 +3477,7 @@ in with self; { TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; TCGA2STAT = derive2 { name="TCGA2STAT"; version="1.2"; sha256="15a5lh0nrdcxdwj7wj5m9rsvk1ygpp6wdjb4swilk91rb1lblikv"; depends=[CNTools XML]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.3"; sha256="0mi8j7k2b1sx75ka8ympydqpk8jqp8wz8dyf4vk4776fra7bq24p"; depends=[httr]; }; - TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.0"; sha256="1jh4gw9z6kq3lzg2xdr5yw0y9c21zcairwi88lm45px0vd5c4nqh"; depends=[httr jsonlite testthat]; }; + TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.1"; sha256="0jxpv0a7lyd0lb5mijpfw0pcp80h9s7bhxn9j4w7bkwsg1n59c83"; depends=[httr jsonlite testthat]; }; TDA = derive2 { name="TDA"; version="1.5.1"; sha256="1ab60b1wk2j4271vikbglkk12nwl77d5b9w3xqvzpcbrbjfqsmjh"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; @@ -3432,12 +3504,13 @@ in with self; { TLdating = derive2 { name="TLdating"; version="0.1.3"; sha256="12lmakk1zd6wqh1318pnl14i7km2hynjn4ymchfjr2bwmp45c1ra"; depends=[gplots Luminescence]; }; TMB = derive2 { name="TMB"; version="1.7.11"; sha256="1v74iw4pmklhnq5rc0xaahrfd78bgz1fylnwp8gahha72lbcdzrq"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; }; + TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; TOC = derive2 { name="TOC"; version="0.0-4"; sha256="1c16d4wrzir6v3c323sck6r9yz6mv1a70xamlj5ha1ydmfixcza9"; depends=[bit raster rgdal]; }; - TOSTER = derive2 { name="TOSTER"; version="0.2.3"; sha256="1wyzlil7sznf0gldnmga9qkbj4qcfrbpm8imns18dpfrz3kxaw4i"; depends=[ggplot2 jmvcore R6]; }; + TOSTER = derive2 { name="TOSTER"; version="0.2.4"; sha256="0x01a9z3620akp22h85ssqc5n5iiw17x52gb2kpb63dbk24x3pkn"; depends=[ggplot2 jmvcore R6]; }; TP_idm = derive2 { name="TP.idm"; version="1.2"; sha256="08n5bgc7gw1cbn9q7kd6jfxcwmb5mfjmdmhkhr35fi5ah21a57mh"; depends=[]; }; TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; }; TPmsm = derive2 { name="TPmsm"; version="1.2.1"; sha256="1vynzb6qpp8785rdjyarhvwbkasviamhljjlnp4i0dds96wwdgx1"; depends=[KernSmooth]; }; - TR8 = derive2 { name="TR8"; version="0.9.16"; sha256="04zn01hqvza7pkc3pmiwiygdkawa39wc3g875mdvd5hjhi4ffkaf"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; + TR8 = derive2 { name="TR8"; version="0.9.18"; sha256="14nfyqwqv1l5lr5zvywd5pxrv4qz0g5v5x8sdxkjbkxi9s7xrlaw"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; TRAMPR = derive2 { name="TRAMPR"; version="1.0-8"; sha256="0nxp8wdr7yx94fk14m0r4dh2jxcvjqp6lg02092zww5y7jlbf4ds"; depends=[]; }; TRD = derive2 { name="TRD"; version="1.1"; sha256="0bhn4bcrq39f5dgqc74jqsfhs1iqfxhawacqqyncbk2372013nqp"; depends=[Rlab]; }; @@ -3498,6 +3571,7 @@ in with self; { TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestSurvRec = derive2 { name="TestSurvRec"; version="1.2.1"; sha256="05f5gc8hvz09hx015jzis6ikki9c1brdq7l7a9bxm9bqbcc9f2f9"; depends=[boot survrec]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.0"; sha256="1fagy9168cz09p460pa0qyn8m79zg4i2b9j5vg8gm1ssqi2znsl9"; depends=[alabama DoseFinding lattice]; }; + ThankYouStars = derive2 { name="ThankYouStars"; version="0.1.0"; sha256="1wzpd9riaphdaw8nfvq25hywpi4qik0cb13qp26q8704acdm55wm"; depends=[httr jsonlite]; }; ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; }; Thermimage = derive2 { name="Thermimage"; version="3.0.0"; sha256="0l098praarg5kg0m5hxs9zbwhl8w7g48ngyiry1rlwkp2rsl3cza"; depends=[png tiff]; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; }; @@ -3507,11 +3581,11 @@ in with self; { ThresholdROC = derive2 { name="ThresholdROC"; version="2.5"; sha256="1c727qbplwrclhg41jjygm6a5k45whzar9pjm2nlp9ccr9fv710a"; depends=[MASS numDeriv pROC]; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; }; - TideCurves = derive2 { name="TideCurves"; version="0.0.2"; sha256="1xm8df18i3pzb2v5g2li9axdx1hhg63q3j73381s88iadvqgf3aq"; depends=[chron data_table fields]; }; + TideCurves = derive2 { name="TideCurves"; version="0.0.3"; sha256="0wll0zbkfas6hs4h8ma5km68nv2brw1k75ngw5lrnxilya22lrgp"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; - TideTables = derive2 { name="TideTables"; version="0.0.1"; sha256="08c1fbwxc2kc3vicjdw8qg452y8jrsgyi6b4qbnpb8j6nj91qcx3"; depends=[chron data_table]; }; - Tides = derive2 { name="Tides"; version="1.2"; sha256="1bd5x5wx6dd7498dc8jl0hsflxvlya2b6rkwg39dpsxsigb4qc5n"; depends=[]; }; - TileManager = derive2 { name="TileManager"; version="0.1.11"; sha256="11jlg99zfi00ss2a9qzmzxxdphdl3zy3pac0c7b0j2v2f529xwsw"; depends=[APfun raster rgeos sp]; }; + TideTables = derive2 { name="TideTables"; version="0.0.2"; sha256="1grm9s9np7xs2d8gql4sgg72rxpxiidw6g1ni8q97qgqr7r3105l"; depends=[chron data_table]; }; + Tides = derive2 { name="Tides"; version="2.0"; sha256="0s7ja0vs8ag7myjq4kmza4ja9p76sdbbkaaamxbsgp9yaf02c6nf"; depends=[]; }; + TileManager = derive2 { name="TileManager"; version="0.2.0"; sha256="1zk5q1m3imlr9ms81jyb9kibm0m5zmiidsv86qgnqj8r4b8hpqyh"; depends=[APfun raster rgeos sp]; }; TilePlot = derive2 { name="TilePlot"; version="1.3.1"; sha256="0yfzjyzc743rv5piw9mb7y0rr558hkxszgz49lya2w3i1mqvxbzy"; depends=[]; }; TimeMachine = derive2 { name="TimeMachine"; version="1.2"; sha256="1dz0j777wmd8mpkm2ryiahpcw6w88w429zjcw6m67pi20r1992cb"; depends=[]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; @@ -3536,7 +3610,7 @@ in with self; { TreeBUGS = derive2 { name="TreeBUGS"; version="1.1.1"; sha256="1zhxmmks263khrdckp570j6lykfhhlpc6rnhw3rk35a9k89yp90v"; depends=[coda hypergeo MASS Rcpp RcppArmadillo rjags runjags]; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; TreeSim = derive2 { name="TreeSim"; version="2.3"; sha256="1y98m2whpx9kssgklw2d6prs6af9vcn8yva1l7lm1l509py1fn6h"; depends=[ape geiger]; }; - TreeSimGM = derive2 { name="TreeSimGM"; version="2.2"; sha256="14m7m3krhbwnm5l254cy12i201kjfbbvnsajkgljkmpqxn0cg5vb"; depends=[ape TreeSim]; }; + TreeSimGM = derive2 { name="TreeSimGM"; version="2.3"; sha256="0qwqvmmdn290llz5hmmx2q24jjmd1bxssrslzv31kzi1yq5h6w0b"; depends=[ape TreeSim]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.0.2"; sha256="0ymlgalddnfnb55s31bysm68yh823ys0rr5fgiic4a2ipnbfd8qf"; depends=[pROC rms]; }; TriMatch = derive2 { name="TriMatch"; version="0.9.7"; sha256="06idgh9bwwbwa16hlc2kgm06n9shzm0825f7k65zpz3isq23dp7q"; depends=[ez ggplot2 gridExtra PSAgraphics psych reshape2 scales]; }; TriadSim = derive2 { name="TriadSim"; version="0.1.1"; sha256="0m14k512b7q09zx51v2kxa8q9pk2i179w6ckl6jxj2acc860xw3k"; depends=[doParallel foreach snpStats]; }; @@ -3558,6 +3632,7 @@ in with self; { UNF = derive2 { name="UNF"; version="2.0.6"; sha256="0sr740dhfp7z9wvhajww43g5gz79x5y5dbflw5a813jgmiqm1jyq"; depends=[base64enc digest]; }; UPMASK = derive2 { name="UPMASK"; version="1.1"; sha256="1qxajvld8g2mii12agypcm50fps9bai6d2wx6l0bv3srk80in7ai"; depends=[DBI MASS RSQLite]; }; USAboundaries = derive2 { name="USAboundaries"; version="0.3.0"; sha256="0rza1np6320xm9ppn458cwgz4zaq173m3g0ylvxbx1fxq716lqj6"; depends=[]; }; + USCF = derive2 { name="USCF"; version="0.1.3"; sha256="00ynxfd4lg8g4mspz5izxvgkj27l2i1cnp0z0dnkhsbxsg0161mj"; depends=[]; }; USGSstates2k = derive2 { name="USGSstates2k"; version="1.0.1"; sha256="11yk0pkss23j6fmmxnjkjm9p24ln343y4hijigbrbvcnb21wj2py"; depends=[sp]; }; UScancer = derive2 { name="UScancer"; version="0.1-2"; sha256="0p1kxw1phqq598ljk3njznc9kmgscc8gmwdrvx1scba9rr6n61kl"; depends=[rgdal]; }; UScensus2000cdp = derive2 { name="UScensus2000cdp"; version="0.03"; sha256="143hqnzdla3p31n422ddzaaa34wc6xnnhil4y53m4qydyg407700"; depends=[foreign maptools sp]; }; @@ -3565,17 +3640,18 @@ in with self; { UScensus2010 = derive2 { name="UScensus2010"; version="0.11"; sha256="1q06spkh8f4ijvfg557rl3176ki4i8a1y39cyqm3v7mnzwckyj3l"; depends=[foreign maptools sp]; }; UStatBookABSC = derive2 { name="UStatBookABSC"; version="1.0.0"; sha256="16r6clhfaalfsg5hmvzm8a128zygxax5hyc0vr1q9bsw9hj7cs0c"; depends=[]; }; UWHAM = derive2 { name="UWHAM"; version="1.0"; sha256="1qaj8anaxqnx4nc6vvzda9hhhzqk9qp8q7bxm26qgia4hgascnrv"; depends=[trust]; }; + UdderQuarterInfectionData = derive2 { name="UdderQuarterInfectionData"; version="1.0.0"; sha256="084bq5ai1ccp4www64z0ipic74zkd8j1ygv0py900164a25wdr9b"; depends=[]; }; Ultimixt = derive2 { name="Ultimixt"; version="2.1"; sha256="0fh2qpm7qpv1170jzbmzqhvwsn69lblizzisgasswy2nix2jjz4y"; depends=[coda gtools]; }; Umpire = derive2 { name="Umpire"; version="1.3.4"; sha256="0kxndg96ah6sk1m216f2dmkg73w10lyg3rv7qsrnn145mznsdlw1"; depends=[]; }; UncerIn2 = derive2 { name="UncerIn2"; version="2.0"; sha256="08cg7armz9xwwn1222aws98cwrvmw0s73pxpnszmrmrli1qs92k1"; depends=[automap fields geoR gstat RandomFields Rcpp sp]; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.3.0"; sha256="09x52g691qqsphy2sppm3852gak0ammsan4x306vd16yz9z0zlb2"; depends=[nloptr reshape2 rootSolve]; }; - Unicode = derive2 { name="Unicode"; version="9.0.0-1"; sha256="1daf4wlglqzha0p6cbmrkwn4ppkzfvpvg1aa64gphr4dg2g5jsdf"; depends=[]; }; + Unicode = derive2 { name="Unicode"; version="10.0.0-1"; sha256="1kj4b29gj3p0wzlzxqn7lwzabair6np705va0nxissfybpmwalgk"; depends=[]; }; UnivRNG = derive2 { name="UnivRNG"; version="1.0"; sha256="1d55a103q30vhyjq659a6bbnqbm4g4calr5j4xw8p0h0x5i4p5xh"; depends=[]; }; UpSetR = derive2 { name="UpSetR"; version="1.3.3"; sha256="08vj7l92b8fpqyqwxshll2mhk3yhgyr74axvr2lf29z78bapymhz"; depends=[ggplot2 gridExtra plyr scales]; }; UsingR = derive2 { name="UsingR"; version="2.0-5"; sha256="1w1swcb5srb2b76agbh3mipz8b3vbhpnhxfhg7k546y38j3crafq"; depends=[HistData Hmisc MASS]; }; V8 = derive2 { name="V8"; version="1.5"; sha256="155389k8laa48akg0bfsz65s4ddmpk0xpi1ha56z1sayv01vrrgc"; depends=[curl jsonlite Rcpp]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; - VARSEDIG = derive2 { name="VARSEDIG"; version="1.3"; sha256="1qvc9lyfdc0irivi4y27hc5yn5lk05nbgqx7zcj602s0r7i7nvln"; depends=[]; }; + VARSEDIG = derive2 { name="VARSEDIG"; version="1.4"; sha256="1g0qpa21gkp2s0sr336bkdqfrcxygrdl77i3lv09vqimyinbi0p2"; depends=[]; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; }; VARtests = derive2 { name="VARtests"; version="1.0.1"; sha256="19xmf4mg4v1fwd002ccinfbsbpcq9qfmzc2sf710mqv6i8ghv6jm"; depends=[Rcpp RcppArmadillo sn]; }; VBLPCM = derive2 { name="VBLPCM"; version="2.4.4"; sha256="09b80313w2dljl009xzcfhdcl6flc8nqzw9pzgfbciwi61666ppb"; depends=[ergm mclust network sna]; }; @@ -3583,6 +3659,7 @@ in with self; { VCA = derive2 { name="VCA"; version="1.3.3"; sha256="03ibvn3a6bbgq36a1ibhi4givdnba6d0qcfbpbdxkz5masn1r23q"; depends=[lme4 Matrix numDeriv]; }; VDA = derive2 { name="VDA"; version="1.3"; sha256="063mpwbyykx4f46wzfvrgnlq73ar7i06gxr4mjzbhqcfrsybi72b"; depends=[rgl]; }; VDAP = derive2 { name="VDAP"; version="2.0.0"; sha256="134x4aisaim72xkyzb1vb8vhl2m4i12yzh6cj858a1ag7b0ing3n"; depends=[drc ggplot2 reshape2 stringr]; }; + VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; VGAM = derive2 { name="VGAM"; version="1.0-4"; sha256="0r59hyp3afmvms890b3v2yyckf8v0qkjf2w11rnqd2zgg1gri0g5"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.0-3"; sha256="1jicadjaqmys1bbgkp64hmm8wwmi6f734il00v8qjz3jl9b02pkn"; depends=[]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; @@ -3602,7 +3679,7 @@ in with self; { VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; VarReg = derive2 { name="VarReg"; version="1.0.1"; sha256="00ygs9gk2719fnhb47z1pj7qacapzg9qs1li2206vsfrmqxjvj1a"; depends=[sn survival]; }; - VarSelLCM = derive2 { name="VarSelLCM"; version="1.2"; sha256="1pzcadzg1snv2nkdrbhgi6scrd70cawprncm8hs82gcl3r9dscic"; depends=[Rcpp RcppArmadillo]; }; + VarSelLCM = derive2 { name="VarSelLCM"; version="2.0"; sha256="0m0va9qdjwzaaf0ch5b8z5r038lcw9mfpa0sbwd0489igszc3ng7"; depends=[mgcv Rcpp RcppArmadillo]; }; VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.7"; sha256="1sb31338r2p0jsa3k72q9lc5f57cybywmda7q2j8byngh1fjvgyz"; depends=[curl RISmed stringi stringr XML XML2R]; }; VariABEL = derive2 { name="VariABEL"; version="0.9-2.1"; sha256="00k08mvd09rpplakvid6qal1zdxaj1bxn4d2ivpnqihisf7nxqbs"; depends=[]; }; @@ -3615,6 +3692,7 @@ in with self; { VennDiagram = derive2 { name="VennDiagram"; version="1.6.17"; sha256="14cahgxm5kq133j5wv6p7ivlmcmym5r39v4dpj69wnq6w9rjqki8"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; + VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.0"; sha256="1lb1bsapczryw5sabfcvvj0g7p3ar997awphda5fxi4q3s118dxy"; depends=[Rcpp]; }; VetResearchLMM = derive2 { name="VetResearchLMM"; version="0.2.0"; sha256="1vx72pn3fl27mjsa48kz5j1sj1bkjq8q0ifs5dxdfrcdswfqhjcw"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; ViSiElse = derive2 { name="ViSiElse"; version="1.2.0"; sha256="0k5hhzyjws0haawx2r2c0rxjbjdfx821x0jmj88786q6x67x86n0"; depends=[chron colorspace Matrix stringr]; }; VideoComparison = derive2 { name="VideoComparison"; version="0.15"; sha256="0592fz0v4xvq1qy2hj4ph90v7zn1cnzr6a094mp9p1k61ki3fbg2"; depends=[pracma Rcpp RCurl RJSONIO zoo]; }; @@ -3640,7 +3718,7 @@ in with self; { WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; WRS2 = derive2 { name="WRS2"; version="0.9-2"; sha256="0szjq9ffckjqa128avs4cymqvxk7dhldzj620kcq7q59aagrnj04"; depends=[MASS mc2d plyr reshape]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.0"; sha256="0yyhls0qzwwj4sz5d1nvzfiacx28dmf2hgjc7xgfi2qjkckg40hs"; depends=[caret dplyr EnvStats fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; - WVPlots = derive2 { name="WVPlots"; version="0.2.5"; sha256="0d1za8mp1ikaav756kqlnl0c0k08cg9dqfnn58izw3k5g6g4l4bn"; depends=[ggplot2 gridExtra mgcv plotly replyr reshape2 sigr wrapr]; }; + WVPlots = derive2 { name="WVPlots"; version="0.2.6"; sha256="0j399zjm2izg52fa1x06aqi56kmpcj8ciabvkyrcfpmf0bk8bxls"; depends=[ggplot2 gridExtra mgcv plotly replyr reshape2 sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.0"; sha256="1m60zchm1f85m2b5h1yqcyhnm4593d0r7wakhmx5zpkhbx1rhgmg"; depends=[inline]; }; WaterML = derive2 { name="WaterML"; version="1.7.1"; sha256="0aqcanq2l3m9w1kglmkbqshs80wx9inmjp0c1i2j901g4k35ss5j"; depends=[httr RJSONIO XML]; }; @@ -3660,12 +3738,13 @@ in with self; { WiSEBoot = derive2 { name="WiSEBoot"; version="1.4.0"; sha256="1fch78884ay7m2gy602k8df78gkvjiwzkjk550w0k4xbv430ld0h"; depends=[FAdist wavethresh]; }; WikiSocio = derive2 { name="WikiSocio"; version="0.7.0"; sha256="1rc90cidc8mj8x7vw82vx41ivwnmil3cmc1whc8ghxrwli256w32"; depends=[httr igraph pbapply plyr RCurl stringr XML]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="0.1.1"; sha256="1bqgp3wldfmnwwh9llig8xpa4x0rcp1hcwyw7d7pw4ym61b2v65x"; depends=[dplyr httr jsonlite]; }; - WikidataR = derive2 { name="WikidataR"; version="1.3.0"; sha256="0ymbvnalayx082hbjdyxazx25k1qclf16qch5ikzxn3vc8qwffaa"; depends=[httr jsonlite WikipediR]; }; + WikidataR = derive2 { name="WikidataR"; version="1.4.0"; sha256="0ajbizsyk5a7fgbfn26qydxpp5d8qfnlcwbslxrrn913f0yxbcb4"; depends=[httr jsonlite WikipediR]; }; WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; WikipediaR = derive2 { name="WikipediaR"; version="1.1"; sha256="0fxk247jb82g0f3nmwraa4kvdpjxy5s4dcyzj9vkjw2lq8by3l0h"; depends=[httr XML]; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; Wmisc = derive2 { name="Wmisc"; version="0.3.2"; sha256="1dyfpmsl1fdznnz79l8zkp6v4kxc9a260qp7g52mwxj9xw0jb0z7"; depends=[hash R6 Rcpp]; }; WordPools = derive2 { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; }; + WordR = derive2 { name="WordR"; version="0.2.2"; sha256="1q8im3v30xil5qg4m1hypmj439rsx5g2x4mfxsgkz4xz2hwlfh4f"; depends=[dplyr officer ReporteRs]; }; Wrapped = derive2 { name="Wrapped"; version="2.0"; sha256="1z5kypsd39z9arsw57axckvl8b4jnr5wv60s9z58f5s89gn5vxxg"; depends=[AdequacyModel ald cubfits evd fBasics gamlss_dist GeneralizedHyperbolic GEVStableGarch glogis irtProb LCA lqmm metRology NormalLaplace normalp ordinal sgt SkewHyperbolic sld sn VarianceGamma VGAM]; }; WrightMap = derive2 { name="WrightMap"; version="1.2.1"; sha256="16zp7h28fap5hq5xzvkb4lc217yhfmwzfbvw2lsni0gf9qxqkgqd"; depends=[]; }; WriteXLS = derive2 { name="WriteXLS"; version="4.0.0"; sha256="0nwxi36w3rkzw9j0qil64gakhb101rxg1wydjkwlpg0nbsj1sm50"; depends=[]; }; @@ -3695,7 +3774,7 @@ in with self; { ZIM = derive2 { name="ZIM"; version="1.0.3"; sha256="1497ki0pr0x21fz5wa2z6zgb2br99z56gvfxyn9cglqq45if6cjh"; depends=[MASS]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZeBook = derive2 { name="ZeBook"; version="0.5"; sha256="1djwda6hzx6kpf4dbmw0fkfq39fqh80aa3q9c6p41qxzcpim27dw"; depends=[deSolve triangle]; }; - Zelig = derive2 { name="Zelig"; version="5.1-3"; sha256="0qk2i8z07b69vnnmxl33cqxxccjybzqy6rm0vgbjlk7xcl4c1bpd"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; + Zelig = derive2 { name="Zelig"; version="5.1-4"; sha256="0bivbgi70livmddndf7jxgjfy99clsj7psd08jjz4bj47vv32a7x"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-6"; sha256="1whfwc42lsi54xfr423h6jwbvpj6yjyyf0854k1f1ms13liahm8w"; depends=[dplyr Formula jsonlite MASS VGAM Zelig]; }; ZeligEI = derive2 { name="ZeligEI"; version="0.1-2"; sha256="0kilzfqmm6a41mmjvlynh3rnj30fqiq8gsja28fzwpf0lbl89slg"; depends=[dplyr ei eiPack Formula jsonlite MASS MCMCpack Zelig]; }; ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; @@ -3711,7 +3790,7 @@ in with self; { abc = derive2 { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; - abcrf = derive2 { name="abcrf"; version="1.6"; sha256="0qphqw4wg6dl0chfwvf4bxm0kdgsbcvlpshjhimkklmvpxbh1957"; depends=[MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; + abcrf = derive2 { name="abcrf"; version="1.7"; sha256="1gz1jhbc2qj2dvsdn22hb03lm99v8hfr5qjrjql14jvhw8y2smz8"; depends=[MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; abctools = derive2 { name="abctools"; version="1.1.1"; sha256="0x6pjdvn5z510j42byddzdvg2mgv81yy72snia5k8h7bs9k5glfg"; depends=[abc abind Hmisc plyr]; }; abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; }; @@ -3721,6 +3800,7 @@ in with self; { abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abundant = derive2 { name="abundant"; version="1.1"; sha256="1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"; depends=[QUIC]; }; acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; + accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; }; accelerometry = derive2 { name="accelerometry"; version="2.2.5"; sha256="00mn09j7y39sc7h5srnnfk2l73vhh6zq7rzc0vckfvs72lncmwv5"; depends=[Rcpp]; }; accelmissing = derive2 { name="accelmissing"; version="1.1"; sha256="0s2vy16zcpvbqyqz4ifdqccs6bfp8sf7azvfy8jjcm73xncv6ij3"; depends=[mice pscl]; }; accrual = derive2 { name="accrual"; version="1.2"; sha256="1d9jis7d2fihkmwlqqvjl2kh6dcinzbffc9c0m4aqwzaq7c6ngjx"; depends=[fgui SMPracticals tcltk2]; }; @@ -3768,24 +3848,25 @@ in with self; { adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.11"; sha256="1911zdpwyr1gqyjvnn5w3blhk0mjafy0xmr3l6l749lx4cwa08d9"; depends=[filehash sp]; }; adephylo = derive2 { name="adephylo"; version="1.1-10"; sha256="1hj9nkl2z2xdb5yv9a7fb7zn9sd41lrhk2ff5z8s88xab3b2vhnc"; depends=[ade4 adegenet ape phylobase]; }; adepro = derive2 { name="adepro"; version="0.1.0"; sha256="0gvqfrdmd755nz72022wq5vmdh2z83lr7bg44b07bxyd6id2pak0"; depends=[audio Cairo MASS shape shiny shinyBS]; }; - adespatial = derive2 { name="adespatial"; version="0.0-8"; sha256="0h2waffkgdns5pz47zhy0wi388hrya6s01gwgwbyp7fgxj65i9ba"; depends=[ade4 adegraphics lattice MASS shiny sp spdep]; }; + adespatial = derive2 { name="adespatial"; version="0.0-9"; sha256="0cmpsf4vhllykmvkxd71qw8axw270zhj9g7n1nr1myvy46p8iqy2"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep]; }; adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; }; adimpro = derive2 { name="adimpro"; version="0.8.2"; sha256="0nfzk9pp4p16c1nvpidngag96r845376h8ljh7m6p6rhk9fs4jdw"; depends=[awsMethods]; }; - adiv = derive2 { name="adiv"; version="1.0"; sha256="1q6miic5y0zdj1wsnih4jdwg9shmdgv8bxrgfq92dyb5v5zwax5c"; depends=[ade4 adephylo ape cluster phylobase]; }; - adlift = derive2 { name="adlift"; version="1.3-2"; sha256="0nzg16vhm5qg3xzczi3f6cynvp9ym2jsfrc4fdyxq7bwp9kry2i4"; depends=[EbayesThresh]; }; + adiv = derive2 { name="adiv"; version="1.1"; sha256="12m8p1agahzck1nm8j765wacc6vrl0pa31wld4rqxl7c2pvhs7f4"; depends=[ade4 adegraphics adephylo ape cluster phylobase]; }; + adlift = derive2 { name="adlift"; version="1.3-3"; sha256="0q4ipk9yax4wqp3jckpx6ihriqaaaz0knxd19cm20qzdx37vz4id"; depends=[EbayesThresh]; }; admixturegraph = derive2 { name="admixturegraph"; version="1.0.2"; sha256="0ld4qyyvbnr5lz9ff64wjwif4c9xnqyjmbfgbl9bk6pia98zppl3"; depends=[doParallel dplyr foreach ggplot2 MASS neldermead pracma]; }; ads = derive2 { name="ads"; version="1.5-2.2"; sha256="17k24dihl41jgkkglhnkj7lvvl53dgahjkb5jhfmfgk6i16c7s23"; depends=[ade4 spatstat]; }; advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; }; - adwave = derive2 { name="adwave"; version="1.1"; sha256="0kkwgcyxddzmrb8h1w1f4xy2cq40b86q0lxwfdhx25z3zjc4m1ni"; depends=[waveslim]; }; + adwave = derive2 { name="adwave"; version="1.2"; sha256="1fnaq9v84y52kb66aq4g0xiqgllk7mi0is5qiafqf546hck3kzz6"; depends=[waveslim]; }; aemo = derive2 { name="aemo"; version="0.2.0"; sha256="11msifszq7pzmcmwibf2dk2j5dqjc74hrxdxshlprkp6p8sfhijh"; depends=[assertthat dplyr lubridate stringr]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; afex = derive2 { name="afex"; version="0.18-0"; sha256="0ls4mc75f2swhxrabvyilggdhf4ps893d4krpp07magz3iyi7gv5"; depends=[car coin lme4 lmerTest lsmeans pbkrtest reshape2 stringr]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="1.0"; sha256="1nb2dlsnvjsvkyrfdaskmpr3kv3qgdfb60xgmzvscfli0yf4dzr1"; depends=[]; }; afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; + afpt = derive2 { name="afpt"; version="1.0.0"; sha256="0kshyzvw8sp7p686xi98g758zld3n7kq44lnvly8d0y8fg6ahcl2"; depends=[]; }; aftgee = derive2 { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[BB geepack MASS survival]; }; agRee = derive2 { name="agRee"; version="0.5-0"; sha256="16ijw02x5qvc8rppf0yn35aljd35alnvjkjyi6725nywjib2xy5x"; depends=[coda lme4 miscF R2jags]; }; agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; - agricolae = derive2 { name="agricolae"; version="1.2-6"; sha256="04dk0fwszdrmqsrnaxf6h5bi3mmv5pvbi26f4kpzm82pc5x0kh4j"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; + agricolae = derive2 { name="agricolae"; version="1.2-8"; sha256="1c6n52jralp33hl3nmpv9fc9vsvs6lcz9j75f2zbz0r4sqd2mw89"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; agridat = derive2 { name="agridat"; version="1.12"; sha256="1b3dgrp6mkfpfaywqdm22sakadhnl1vlyj1n3rq6bc2f0gf8kcrw"; depends=[lattice reshape2]; }; agrmt = derive2 { name="agrmt"; version="1.40.4"; sha256="1y2gnq6b4zkxknygg73r8qrd435y7c69iqn8i56kwk1ccc1rwddx"; depends=[]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; @@ -3799,13 +3880,14 @@ in with self; { ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akima = derive2 { name="akima"; version="0.6-2"; sha256="1klprj4a2pgy5pwdwnrn3siisi2lh8hr4z6vz38sdvjkcmakxnk1"; depends=[sp]; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; + alR = derive2 { name="alR"; version="2.2.0"; sha256="1hri2vifgwrklmx5087vlxkd1nv1y42rrhpzm4nk1sbn2b3lcway"; depends=[alabama DEoptimR pbdMPI Rcpp RcppArmadillo]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; - alakazam = derive2 { name="alakazam"; version="0.2.7"; sha256="11gv8y7a29vy9q3sfm6nsvlgacsa502j5fpisdqhw4b3f60q3mw3"; depends=[dplyr ggplot2 igraph lazyeval progress Rcpp readr scales seqinr stringi]; }; + alakazam = derive2 { name="alakazam"; version="0.2.8"; sha256="0lilldxynwhp1i538k3xb9c73956agxj6v8zickxkba1sx4k5zrc"; depends=[dplyr ggplot2 igraph lazyeval progress Rcpp readr scales seqinr stringi]; }; ald = derive2 { name="ald"; version="1.1"; sha256="1ar9mrvfw2jz4js9prbp9icsync7fw6wpirpximsr4cy1klqjfpn"; depends=[]; }; - alfred = derive2 { name="alfred"; version="0.1.1"; sha256="04g9956r4359l5k6fjiqddn2qfay3nicrhhbk58sdgl79lay44gz"; depends=[dplyr lubridate magrittr tibble tidyr xml2]; }; + alfred = derive2 { name="alfred"; version="0.1.3"; sha256="0vradid3i83x1n5ss4v85w4vva8psf4byysjv4wrz11mxhy8c68i"; depends=[dplyr jsonlite lubridate magrittr tibble tidyr]; }; algorithmia = derive2 { name="algorithmia"; version="0.0.2"; sha256="0kly70l9si8ni8n5xm30vai70pvfvip6354scvjqj34362s0lm0a"; depends=[base64enc httr rjson xml2]; }; algstat = derive2 { name="algstat"; version="0.0.2"; sha256="1ssdrrwnxrhx3syndqxqcaldlbnjamk3x2yiq7jgxy0qsiadmqsi"; depends=[mpoly Rcpp reshape2 stringr]; }; - alineR = derive2 { name="alineR"; version="1.1.3"; sha256="000rywvianwi0xm0ccsmc7g2hl9d0zjl3qplidrr7rz872f6snwm"; depends=[]; }; + alineR = derive2 { name="alineR"; version="1.1.4"; sha256="1gi4pl7ij60pz85yjiga5kvldraj9n3nhcyqdxrigs0cqvdwg3ar"; depends=[]; }; allan = derive2 { name="allan"; version="1.01"; sha256="02bv9d5ywbq67achfjifb3i7iiaaxa8r9x3qvpri2jl1cxnlf27m"; depends=[biglm]; }; allanvar = derive2 { name="allanvar"; version="1.1"; sha256="142wy1mf4jbp4hy756rz95w24f4j1dgf14f1n5sd09dg4w98j7xg"; depends=[gplots]; }; alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; @@ -3816,6 +3898,7 @@ in with self; { alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; alphahull = derive2 { name="alphahull"; version="2.1"; sha256="129b2j9j60p2wvbb8703x18pydv1g715vmjcb1a80v70i93w4f49"; depends=[ggplot2 R_utils sgeostat spatstat splancs tripack]; }; alphashape3d = derive2 { name="alphashape3d"; version="1.2"; sha256="1apbirffqipdj618qgqh7vjlhg9fp6ncxb0yk4dclpn7g645863x"; depends=[geometry rgl]; }; + alphavantager = derive2 { name="alphavantager"; version="0.1.0"; sha256="02vv0mks73rih4xwabsnk8rkl3cipd27k5lak9lp1rl0agp8g68v"; depends=[devtools dplyr glue httr jsonlite lubridate purrr readr stringr tibble tidyr]; }; alr3 = derive2 { name="alr3"; version="2.0.5"; sha256="0zrrsv2kjq3cky3bhk6gp32p1qpr1i5k2lx7c1w08bql0nb1x740"; depends=[car]; }; alr4 = derive2 { name="alr4"; version="1.0.5"; sha256="0m8jgc4mfni17psf8m0avf0m364vcq5k3c9x807p98ch2z5nsygv"; depends=[car effects]; }; alterryx = derive2 { name="alterryx"; version="0.2.0"; sha256="042cbxw0s43ffmicf25mvg0na1l0x8qbf6rl63ia44r9l3v8jcyd"; depends=[base64enc digest httr jsonlite]; }; @@ -3847,8 +3930,7 @@ in with self; { animation = derive2 { name="animation"; version="2.5"; sha256="0pxmihfr3q1hh4cdnzf7wbzqak5spa3kv4p1wl89giqqngqzwcmj"; depends=[]; }; anocva = derive2 { name="anocva"; version="0.1.0"; sha256="1kira0bs3yjmsq7zrd4y5zzl948pz3rgbfsvkzidi2n6vvcl5344"; depends=[cluster]; }; anoint = derive2 { name="anoint"; version="1.4"; sha256="10gdqgag9pddvxh80h458gagvv1474g4pcpa71cg3h7g62rqvmv5"; depends=[glmnet MASS survival]; }; - anomalyDetection = derive2 { name="anomalyDetection"; version="0.1.2"; sha256="0nn5a7hl5r4g1akpxggqqfgbc56pnm3a08q0i1pd8hmz0rh6apbh"; depends=[caret dplyr gmp gplots magrittr MASS matrixStats plyr purrr qdapTools RColorBrewer tibble tidyverse]; }; - anominate = derive2 { name="anominate"; version="0.5"; sha256="0qhq3ngxi1d3yln6bafg3c36a7whnznnww0101da2y0i6dw79lg5"; depends=[coda MCMCpack oc pscl wnominate]; }; + anomalyDetection = derive2 { name="anomalyDetection"; version="0.2.4"; sha256="0a9m9bxz9v9xx19lq8yih727p7zy25ndfamwajzgh0zvx394h0jz"; depends=[caret dplyr ggplot2 gmp magrittr MASS plyr purrr Rcpp RcppArmadillo tibble tidyr]; }; anonymizer = derive2 { name="anonymizer"; version="0.2.0"; sha256="0zlzxcqy8fjhh6ab58a1pi0k686dzgap58d160ms6bsr5mgn3fbf"; depends=[]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.11"; sha256="165rqsqq3cp5kak4513rv5ibbq61nipvybvmm4m8ynwbd4q5p7p9"; depends=[antaresRead data_table]; }; antaresRead = derive2 { name="antaresRead"; version="1.1.4"; sha256="1n59rspxswxsljhwhbqdcq8grd5899403581rc46bd8l81hldapp"; depends=[data_table lubridate plyr]; }; @@ -3870,7 +3952,7 @@ in with self; { apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; ape = derive2 { name="ape"; version="4.1"; sha256="0959fiiy11rzfzrzaknmgrx64bhszj02l0ycz79k5a6bmpfzanlk"; depends=[lattice nlme]; }; apercu = derive2 { name="apercu"; version="0.2.1"; sha256="11ykbl3g752imj8zr03p5sv6pwl12apdrq4wg66yj1fdqflhd9sp"; depends=[pls]; }; - apex = derive2 { name="apex"; version="1.0.2"; sha256="0p2sjpjg3b6i0ya99hkx2vl40w97k34z0z6ccnz08sfg3fyjiv24"; depends=[adegenet ape phangorn]; }; + apex = derive2 { name="apex"; version="1.0.3"; sha256="157i67yvb9xqlhzcgkxj7n5lq65svxs82z38dv2c0k8p4krjl1pd"; depends=[adegenet ape phangorn]; }; aphid = derive2 { name="aphid"; version="1.0.1"; sha256="1s41ph6i28l14h8s5vvgmx6kby378x27y3vwbz25f2jmq8i7fqi2"; depends=[openssl phylogram Rcpp]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; aplpack = derive2 { name="aplpack"; version="1.3.0"; sha256="0i6jy6aygkqk5gagngdw9h9l579lf0qkiy5v8scq5c015w000aaq"; depends=[]; }; @@ -3891,7 +3973,7 @@ in with self; { aqp = derive2 { name="aqp"; version="1.10"; sha256="1c8vj10mygsrlixx4pwfs1xk69bvhdi37hl4p1v6g3nwvsr8f7ac"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; }; - arc = derive2 { name="arc"; version="1.1"; sha256="1ms0ibvsdjqgdramd4nxy5dcnw019yfpd5xryjficmkfxs6jl9pf"; depends=[arules discretization Matrix R_utils]; }; + arc = derive2 { name="arc"; version="1.1.2"; sha256="145sapcawsp7aan1g2c70a6ck3krxapj9k1w8vkv69irvggbbkql"; depends=[arules discretization Matrix R_utils]; }; archdata = derive2 { name="archdata"; version="1.1"; sha256="07ca51kl5imy6d9s0qi501xxl3zn4q3gbm0w8kvznfw8imclq17z"; depends=[]; }; archetypes = derive2 { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="2.0"; sha256="1ypbkj0wzpj8rhpjp3vc9yk7icjg40xn0ms11mcmhphkjpczmay5"; depends=[rgl XML]; }; @@ -3903,29 +3985,31 @@ in with self; { argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; argparse = derive2 { name="argparse"; version="1.0.7"; sha256="1ph13n8zv591vc427sihj765h27mkdrjyf1whg3as3i644bjsaqs"; depends=[findpython getopt proto rjson]; }; argparser = derive2 { name="argparser"; version="0.4"; sha256="0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"; depends=[]; }; + ari = derive2 { name="ari"; version="0.1.0"; sha256="05pva8jp7dhl46dm1fha6f8mavrs76a6c491fq3mavly8qcbgx44"; depends=[aws_polly progress purrr rmarkdown rvest tuneR webshot xml2]; }; arm = derive2 { name="arm"; version="1.9-3"; sha256="00773z8ai07s9wa2annzjqrxml3z13fh9zqls0z1n7s3h8fwrvqw"; depends=[abind coda lme4 MASS Matrix nlme]; }; arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.1.0"; sha256="1slbmqr0qd8r9lrms7b86fhvn612g4yjbm604zahjr335q6d7h03"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; aroma_apd = derive2 { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; aroma_cn = derive2 { name="aroma.cn"; version="1.6.1"; sha256="1d9g81b12a3m03wrvb3cvg33fjybgiabpxhci2y2rr6diay42pmr"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; - aroma_core = derive2 { name="aroma.core"; version="3.1.0"; sha256="1hynag8jgjbxhnihpvv3zy3z5wdfg52ca9mly9bc649yh3gpmmxk"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; + aroma_core = derive2 { name="aroma.core"; version="3.1.1"; sha256="0mbhk818m8if6cr7g42yy7ba13jh2xs66xkx4zh7dqlwrrmgjnk1"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; arrApply = derive2 { name="arrApply"; version="2.0.1"; sha256="007fsqgb9bsr4mscljhp37dvrk7cv6nrb7y28w8kc7mxvgdq29wg"; depends=[Rcpp RcppArmadillo]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.0-20160527"; sha256="1ib91hpg6xgy0jr4sb8ib19x0v4f5n96lak0qm0z5vksawgcnp1l"; depends=[svUnit]; }; ars = derive2 { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; }; - arsenal = derive2 { name="arsenal"; version="0.5.0"; sha256="0acqzq2g7bgyj9k3kn967akyjjk5rpnd598q2dw27zq0vyysaxr9"; depends=[testthat]; }; + arsenal = derive2 { name="arsenal"; version="0.6.0"; sha256="1p3yfqjbxg1j1k65n1lfnkgncsw1wbrbvswn5psvn9cdfnjnf939"; depends=[testthat]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; - arules = derive2 { name="arules"; version="1.5-2"; sha256="0i5cj2v86nmrqf4lr0jisfpvscjz6pp6d8kzaj1ry09d4j3z2siz"; depends=[Matrix]; }; + arules = derive2 { name="arules"; version="1.5-3"; sha256="04x29jdj0b7pz6rfxs1l4lvsf0xrpjaxw94p69cg3b3ymv822c79"; depends=[Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.1.2"; sha256="0c37cffb89gsyv5shpgiksrh5hi2lzdqsk7xl8lxzz6mnv4v1xrj"; depends=[arules caret Matrix testthat]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; }; arulesSequences = derive2 { name="arulesSequences"; version="0.2-19"; sha256="1cncvrf7za38b3vdwbzy4yrbakj7jbpxrl1jg6bvjnlkymiajavx"; depends=[arules]; }; - arulesViz = derive2 { name="arulesViz"; version="1.2-1"; sha256="0x4hg5nhkga6zikl5ah5g0vvqfn0xw9277c9q4hfxp4x2hzdbsyy"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd]; }; + arulesViz = derive2 { name="arulesViz"; version="1.3-0"; sha256="0k9lq1w0cdk9mlbr5mwh87qrzank1nd8bwlymv4xyi7xm5y6wq4l"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd visNetwork]; }; as_color = derive2 { name="as.color"; version="0.1"; sha256="1y5qpm0pabfk5qvgx6s2vqqxfhp1x99g7dva24zay34nvf4bxrzn"; depends=[]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; asbio = derive2 { name="asbio"; version="1.4-2"; sha256="0f7zw4vmlklf8sc0sdhn67z15xawl0qaxsk7i29m98a2q8gfnjl4"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascii = derive2 { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; }; + asciiSetupReader = derive2 { name="asciiSetupReader"; version="1.0"; sha256="0xslny66fpfmgj6wxznnswzbd9riddh09g0v356m1aqb10z1by4a"; depends=[data_table readr stringr]; }; asd = derive2 { name="asd"; version="2.2"; sha256="0p3r4qjam3sl3rpcilb0pgx4xx3ly71xqnvkv31vzjs885lgxz4l"; depends=[mvtnorm]; }; - asdreader = derive2 { name="asdreader"; version="0.1-2"; sha256="0lfm0c5nzm276zaaxxwkpkqca5xg9r6ysfpgl6wvdbbvs9s83x4a"; depends=[]; }; + asdreader = derive2 { name="asdreader"; version="0.1-3"; sha256="15a922aw0v5w4hrha03xifx8cpifcc773gambgwqq6i5nz08ya26"; depends=[]; }; ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; ashr = derive2 { name="ashr"; version="2.0.5"; sha256="0blr19ipcanwjxizilkd8hb37dlhb6idjcw2lf0ll8pkd2l68f5z"; depends=[assertthat doParallel etrunct foreach pscl Rcpp SQUAREM truncnorm]; }; asht = derive2 { name="asht"; version="0.9.1"; sha256="1la0dnyxrl35pb531awfkajinx7bwf78gzm8f1pryh5x5g8lpli6"; depends=[bpcp coin exact2x2 exactci ssanv]; }; @@ -3967,7 +4051,7 @@ in with self; { astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; astsa = derive2 { name="astsa"; version="1.7"; sha256="1rzl1ayzv8lnn2009j4v667pp8sxdbn7qbqqyjpq00c75f4wss6x"; depends=[MASS]; }; asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; }; - asymmetry = derive2 { name="asymmetry"; version="1.2.2"; sha256="1l3i5ja0b3q83b7cnvzbdc4k2hy6166xfkgfhl1bggyf0cbf55v9"; depends=[gplots rJava smacof]; }; + asymmetry = derive2 { name="asymmetry"; version="1.2.3"; sha256="1h5jnpqbjdnr7x6imxm7rvhlhv1p4j8wc2k2zs521rdq2qj5ir5w"; depends=[gplots rJava smacof]; }; asympTest = derive2 { name="asympTest"; version="0.1.3"; sha256="11nlkgws3y8xbz3yli55414a2rkk7367q9q5r2ssa61jaiimibhh"; depends=[]; }; asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; }; atlantistools = derive2 { name="atlantistools"; version="0.4.3"; sha256="06rb0c4ralx55mdlqwpjzim0inxif4cdi9732v4h1ll8jhlm5v7d"; depends=[circlize dplyr ggplot2 gridExtra lazyeval magrittr proj4 purrr RColorBrewer RNetCDF rvest scales stringr tibble tidyr xml2]; }; @@ -3981,8 +4065,10 @@ in with self; { audio = derive2 { name="audio"; version="0.1-5"; sha256="1hv4052n2r6jkzkilhkfsk4dj1xhbgk4bhba2ca9nf8ag92jkqml"; depends=[]; }; audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; + augSIMEX = derive2 { name="augSIMEX"; version="1.0"; sha256="1d13kh9xfkpwy2285awhvgfkwyqlsdk2bypm0i1jjf10avrynxvf"; depends=[MASS Rcpp rootSolve]; }; auk = derive2 { name="auk"; version="0.0.2"; sha256="0vi1fs2nda77sfhq3xzqs04kd7fq14bknv7jqffa30g84bm8qkb1"; depends=[assertthat countrycode magrittr stringi stringr tidyr]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; + auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; }; autoSEM = derive2 { name="autoSEM"; version="0.1.0"; sha256="0s58dnpr7zyclk5vwaf7a2id6paqsnb224f0gpmj2nms4klsw323"; depends=[GA lavaan snowfall]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; @@ -4017,16 +4103,17 @@ in with self; { babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babynames = derive2 { name="babynames"; version="0.3.0"; sha256="018wyajdkpvcywcvkna57m5sqnsh7i9zq2hqlyb8q93mgyb3ddzm"; depends=[tibble]; }; - backShift = derive2 { name="backShift"; version="0.1.4.1"; sha256="1vixr9l9zqaqy0knahijp6y9vzix4m8bz3abiprk3v2pjzg5nrvm"; depends=[clue ggplot2 igraph jointDiag MASS matrixcalc mvnmle reshape2]; }; + backShift = derive2 { name="backShift"; version="0.1.4.2"; sha256="1nj7mcdpzfzq68qg86rrys752gzw69n99yyb0jzg6r8qrgpcxj49"; depends=[clue ggplot2 igraph MASS matrixcalc mvnmle reshape2]; }; backblazer = derive2 { name="backblazer"; version="0.1.0"; sha256="020kdydksm0brnxsa00blf5sylxd4hz49wmngk1x1fx43kdlyc41"; depends=[httr jsonlite openssl]; }; backpipe = derive2 { name="backpipe"; version="0.1.8.1"; sha256="1nid5rbgwiq8axkrl2gwl4vr5bjq5k5nrhq7macddvijcn3r2dz8"; depends=[]; }; - backports = derive2 { name="backports"; version="1.1.0"; sha256="1kcz6j82by28cjk5wi2j6dfqdin1kib4y7d2r4h3zabcxmk6jly5"; depends=[]; }; + backports = derive2 { name="backports"; version="1.1.1"; sha256="15w8psmv203wzijrk4hvwaw3i4byh2m5s09yrkqwhfckhaj82kj9"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; backtestGraphics = derive2 { name="backtestGraphics"; version="0.1.6"; sha256="14l9dbkbcx4kl45kpjbq4ihzf47j859khhd1db40vnp8x57g9xcx"; depends=[dplyr dygraphs scales shiny xts]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; badgecreatr = derive2 { name="badgecreatr"; version="0.1.0"; sha256="070zb5jw817s9ykqc3dvzjqk48612gydkdc31svc0ji01s1y1545"; depends=[stringr]; }; badger = derive2 { name="badger"; version="0.0.2"; sha256="15qnb0a6rqsf1dbb1cf9ag2z5f4zhf8b8psxbsdhh42qrg8g3mma"; depends=[dlstats rvcheck]; }; bagRboostR = derive2 { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; }; + bairt = derive2 { name="bairt"; version="0.1.1"; sha256="1i0y7bkhx0rsv93j32i2v3g2h3csxvnkkkx9kvkdnkcwzffps5x2"; depends=[coda mvtnorm shiny shinyjs]; }; baitmet = derive2 { name="baitmet"; version="1.0.1"; sha256="02ydakqr8v41hdnhcsgigwnic8d48qswryg1srb5w1fqdmdglnkl"; depends=[erah HiClimR Rcpp signal XML]; }; bamboo = derive2 { name="bamboo"; version="0.9.18"; sha256="1y95apf43bpgw15jh4bzqfyiqs2imdrmn4wmbplxgjn4369mbqq9"; depends=[rscala]; }; bamdit = derive2 { name="bamdit"; version="3.1.0"; sha256="148ikj7mly8m6kxs2n4gidi7kb70i3x2vbf9xsllrf0cgvrjccps"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; @@ -4049,10 +4136,10 @@ in with self; { batade = derive2 { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive2 { name="batch"; version="1.1-4"; sha256="03v8a1hsjs6nfgmhdsv6fhy3af2vahc67wsk71wrvdxwslmn669q"; depends=[]; }; batchmeans = derive2 { name="batchmeans"; version="1.0-3"; sha256="1qkdljngvlahk0pbrkarkjh2g4sxxwiva9f3m5y8gz8pjw9fpy9n"; depends=[]; }; - batchtools = derive2 { name="batchtools"; version="0.9.5"; sha256="0g49bgh9mvxwfw5pq0hza9svvr7rdwpd9pk72s37icsnj948bj5n"; depends=[backports base64url brew checkmate data_table digest progress R6 rappdirs stringi withr]; }; + batchtools = derive2 { name="batchtools"; version="0.9.6"; sha256="1yr5ar2c7jwm5c6q8gky6xi8fyp92y4nm0jvg0wcxb3lhwvmr42k"; depends=[backports base64url brew checkmate data_table digest progress R6 rappdirs stringi withr]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; - bayesAB = derive2 { name="bayesAB"; version="1.0.0"; sha256="0m7nhzyq727gzs191ra39kdds634i39hxvflcfxfgl6l6px4zdcz"; depends=[ggplot2 Rcpp reshape2]; }; + bayesAB = derive2 { name="bayesAB"; version="1.1.0"; sha256="0g74n6jvpmb2sbmywcagb10rk8sd3pxzkw9s8s6qpg34q58v01a6"; depends=[ggplot2 Rcpp]; }; bayesCL = derive2 { name="bayesCL"; version="0.0.1"; sha256="1l278lxidn16nma2ny14wjajcqyzbr6j5xl2lj08cic26c7hvjbm"; depends=[]; }; bayesDP = derive2 { name="bayesDP"; version="1.2.2"; sha256="0lfw3mnk6kgpzg0h0r54k5dndgpbsb2i2q59qwsm6k14nz1b5n5j"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="2.0"; sha256="1s2b8f43wi9ja966n2p2r4l4s79vk6xb8mqaxsagnw90g969p681"; depends=[coda numDeriv]; }; @@ -4064,19 +4151,19 @@ in with self; { bayesMCClust = derive2 { name="bayesMCClust"; version="1.0"; sha256="14cyvcyx3nmkbvsy7n4xjp7zvcgdhy013dv9d72y8j5dvlv82pb4"; depends=[bayesm boa e1071 gplots gtools MASS mnormt xtable]; }; bayesPop = derive2 { name="bayesPop"; version="6.1-1"; sha256="0vf82bf400wsm8pkp1pzsxylijajp01z6q260cdri12c0qjdzcy5"; depends=[abind bayesLife bayesTFR fields googleVis plyr reshape2 rworldmap wpp2012 wpp2015]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; - bayesSurv = derive2 { name="bayesSurv"; version="3.0"; sha256="0p1kn7hc02v9vrnzicwh2vy5h7aw0mdhh2cssm09dp9wz4sajwgk"; depends=[coda smoothSurv survival]; }; + bayesSurv = derive2 { name="bayesSurv"; version="3.1"; sha256="1dbk9bi4l5m5hmn10i7qm3ypb5y91dxr7b01xvrb2wpn6i1s9h7n"; depends=[coda smoothSurv survival]; }; bayesTFR = derive2 { name="bayesTFR"; version="6.1-1"; sha256="12f3s1k7jalaqd3hxhlrn2i6nvzsmcgv5k1jfhbmk7py5b7ybj2p"; depends=[coda MASS mvtnorm wpp2017]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; bayesboot = derive2 { name="bayesboot"; version="0.2.1"; sha256="0gd3in9z8kx3d29dvyd8blmhlc7wxxl5b2hxnrrq0w13jcnsn57w"; depends=[HDInterval plyr]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; - bayeslm = derive2 { name="bayeslm"; version="0.1.0"; sha256="1fbpw2dxhcq7zd7652gskq2x3sz0ad475ds3c2cq94d3aasvzjix"; depends=[Rcpp RcppArmadillo]; }; + bayeslm = derive2 { name="bayeslm"; version="0.2.0"; sha256="04p01rkgn2mbr0ihyclf1hsmr5410cihk4xwwcay7saxdbpsxn3d"; depends=[Rcpp RcppArmadillo]; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; bayesm = derive2 { name="bayesm"; version="3.1-0.1"; sha256="04b4s8clxrmdyhnhd2arnsdi992422yam3z91w6dzrmngwxq4yaq"; depends=[Rcpp RcppArmadillo]; }; - bayesmeta = derive2 { name="bayesmeta"; version="1.5"; sha256="0cdld4gvaaj1aqj2fjpg19a1ipym1ci099r4q5mjfnwb9n5ji2dx"; depends=[forestplot]; }; + bayesmeta = derive2 { name="bayesmeta"; version="1.6"; sha256="0drg3dwqq5zc70iq8a4znhk99k73vnczg45vna0d55p4ldr0nirf"; depends=[forestplot]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-4"; sha256="1qms1nnk2nq3gqr8zf2b9ri4wv8jrxv5i8s087k1rwdvya3k5r9a"; depends=[coda rjags]; }; - bayesplot = derive2 { name="bayesplot"; version="1.3.0"; sha256="0n07ii605dskf0x9bms7krx1akjghb4bmq76zm39sc1lshyxinrr"; depends=[dplyr ggplot2 reshape2]; }; + bayesplot = derive2 { name="bayesplot"; version="1.4.0"; sha256="0izp2v734n4pcdlfjrhasl2srlnhccsf93ni6hfhl5l5xyf02043"; depends=[dplyr ggplot2 reshape2 rlang]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; bayesreg = derive2 { name="bayesreg"; version="1.0"; sha256="0crld04cxxqw0xq2d4rdv040iq7vchwjbzacj0z8jv245hwgr9qy"; depends=[BayesLogit]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; @@ -4120,8 +4207,8 @@ in with self; { belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; benchmark = derive2 { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[ggplot2 plyr proto psychotools relations reshape scales]; }; - benchmarkme = derive2 { name="benchmarkme"; version="0.4.0"; sha256="1x17nhpxvz51mllml8mhn9lzx5in1mmfi1f6arqw2xhxd6rkbjdz"; depends=[benchmarkmeData httr Matrix]; }; - benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.4.0"; sha256="06nphyma03pmjynmck9mcnws6sjp32894wv8pvh9xa14ifxqf48f"; depends=[]; }; + benchmarkme = derive2 { name="benchmarkme"; version="0.6.0"; sha256="0w98q4b814bz3q0vqdfnwqrgfrky3ggsyyzmdiz17kv6xk17qds8"; depends=[benchmarkmeData doParallel foreach httr Matrix]; }; + benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.5.1"; sha256="0vv5d90qv81lwrgi5d3zbwlwxwjqlx70xi4ljhcc0ljv50x2rvv4"; depends=[]; }; benchr = derive2 { name="benchr"; version="0.2.0"; sha256="042ijh6726s116z7w2cky5l105p3dj7xsfmlwkigsbrmya8x5d37"; depends=[Rcpp RcppProgress]; }; benford_analysis = derive2 { name="benford.analysis"; version="0.1.4.1"; sha256="0acbjjavbvsaigy78b5k9qhj8011751116lqln8j0v8w1k3vqwqm"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; @@ -4150,8 +4237,8 @@ in with self; { bgsmtr = derive2 { name="bgsmtr"; version="0.1"; sha256="09h118msqf9yl2z7d6dsvgn4vrvy43ynznajj58k7gkxdlm1nimg"; depends=[coda EDISON Matrix mnormt mvtnorm sparseMVN statmod]; }; bhm = derive2 { name="bhm"; version="1.11"; sha256="1d35fvwk8v8b2x1knhsk5rz48hc5k9lkrxqd6y8p0gn63k5iy5ag"; depends=[coda survival]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; - bib2df = derive2 { name="bib2df"; version="0.2"; sha256="06gzkvf5fngijkicsi97a9vzabkc3af32mr52wl178y2pzigf4hc"; depends=[dplyr humaniformat plyr stringr]; }; - bibliometrix = derive2 { name="bibliometrix"; version="1.7"; sha256="11fnymbfrpw3r63lw1z4k4a8nni4lhzb4ddxv18azhaqawkf7hwh"; depends=[factoextra FactoMineR ggplot2 igraph Matrix RColorBrewer rscopus SnowballC stringdist stringr]; }; + bib2df = derive2 { name="bib2df"; version="1.0.0"; sha256="0qhhv23lr5ya3jhqrx4x5zx3bl0mrjlwd8i30lbinl7hlz50ahgr"; depends=[dplyr httr humaniformat stringr]; }; + bibliometrix = derive2 { name="bibliometrix"; version="1.8"; sha256="1wzdyymmzikbkr41mw5s3srsvzh4zww8657r8i60dnf8dajgcryj"; depends=[factoextra FactoMineR ggplot2 igraph Matrix RColorBrewer rscopus SnowballC stringdist stringr]; }; bibliospec = derive2 { name="bibliospec"; version="0.0.4"; sha256="0abrbaw2knnlh8g5r4c2i6cc7a6ilfxry8zhscrx0x58irmp790b"; depends=[DBI RSQLite]; }; bibtex = derive2 { name="bibtex"; version="0.4.2"; sha256="0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"; depends=[stringr]; }; biclique = derive2 { name="biclique"; version="1.0.1"; sha256="0wxvqjxc11ccvfnlnnb6gv6r74a48pg3yabsjynrg1m2kbynnqjf"; depends=[]; }; @@ -4160,7 +4247,7 @@ in with self; { bife = derive2 { name="bife"; version="0.4"; sha256="1h3r5vigs2ghga84smx492m0v9aq6gynnw5r23n20kkbiscv1fxk"; depends=[Formula Rcpp RcppArmadillo]; }; bigFastlm = derive2 { name="bigFastlm"; version="0.0.2"; sha256="012vxy5mpknc3998h382qdzgrxnyfpyddy003zjp3v42clim5y64"; depends=[BH bigmemory Rcpp RcppEigen]; }; bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; - bigKRLS = derive2 { name="bigKRLS"; version="1.5.3"; sha256="1dapdxk6bmbpixgxs04hb64wjx9nlr55gg76zpbnwbddwwmp2b28"; depends=[BH bigalgebra biganalytics bigmemory ggplot2 Rcpp RcppArmadillo shiny]; }; + bigKRLS = derive2 { name="bigKRLS"; version="2.0.2"; sha256="0m58mjk3s4slpblxiby6j7fd2pha19nl7gl71f49k5gkz87skd2m"; depends=[BH bigalgebra biganalytics bigmemory ggplot2 Rcpp RcppArmadillo shiny]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.3.1"; sha256="1lhkd4yz7gybcsx0wsg2ikilns5xxmij5vpc1rsskwpsmgv7xwsh"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigRR = derive2 { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[DatABEL hglm]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; @@ -4175,16 +4262,20 @@ in with self; { bigpca = derive2 { name="bigpca"; version="1.0.3"; sha256="0hqkaamj5fyp2jw5727pkvmnqr194ngh4hlja14qmj81nr26a88p"; depends=[biganalytics bigmemory bigmemory_sri irlba NCmisc reader]; }; bigrquery = derive2 { name="bigrquery"; version="0.4.1"; sha256="07hi5z8l2qm9cjfc9y1y5vjijkkwmxq1dgz3bvv578kasz6yjs11"; depends=[assertthat DBI httr jsonlite progress readr]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-0"; sha256="0jjlv9qidn8xrz630wbyq7kz7vlxgaphv2y2siv90j01j5nj4s89"; depends=[quadprog]; }; + bigstatsr = derive2 { name="bigstatsr"; version="0.2.2"; sha256="0x46csllfdiyr0krsiicvlcdkafh114r6iv71barah3sfib6rash"; depends=[BH cowplot doParallel foreach ggplot2 glue magrittr Matrix Rcpp RcppArmadillo RSpectra]; }; bigstep = derive2 { name="bigstep"; version="0.7.4"; sha256="0g45fgnamdv1v3b8xvpsj4rzhisyvbbddwyzvzvmmi4a8w20pzn5"; depends=[bigmemory matrixStats R_utils RcppEigen speedglm]; }; bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; }; bigtcr = derive2 { name="bigtcr"; version="1.0"; sha256="1wh85r6f4jd8xzinczr5g1p1acbcyn4am3v1n4blfbn447l9nx4z"; depends=[]; }; bikedata = derive2 { name="bikedata"; version="0.0.4"; sha256="0j4zyphnmmgdckvlhf0sbmnjkz1xpbikfsgk111lpcn5dg1h526g"; depends=[BH DBI httr lubridate magrittr Rcpp reshape2 RSQLite tibble xml2]; }; bikeshare14 = derive2 { name="bikeshare14"; version="0.1.0"; sha256="12399c01s8p9rmpi3fpy4rm7xxnsf627slz3h234frbahhs882c4"; depends=[]; }; bild = derive2 { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv5cdndyxfsxp77l6nc3zc6ixna8"; depends=[]; }; + billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; + billboarder = derive2 { name="billboarder"; version="0.0.3"; sha256="1zw18cxsk4q6lbasig6bw2zjxws76rmpcp4qna4jdq6ars1p8sl1"; depends=[htmlwidgets jsonlite magrittr]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="1.1-0"; sha256="1sf7prg2x1ryynf1kz7jr50svmga7kjgd5pi9qm3g2hyimz8mvs4"; depends=[]; }; binMto = derive2 { name="binMto"; version="0.0-6"; sha256="1h9s42wk848x15f4glhsh2iikpra64miwlia6xz5dqlzbs4vw86k"; depends=[mvtnorm]; }; + binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; }; binaryLogic = derive2 { name="binaryLogic"; version="0.3.5"; sha256="1zaqwkrr1dyxsbfa3zvz1ciipmqddl932jkw9r00qmnhdh3ybpa6"; depends=[]; }; binda = derive2 { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; }; bindata = derive2 { name="bindata"; version="0.9-19"; sha256="15ya21fz1kvq4qsppkn9ypiqvaq8q4vszdcgcymampa7zc07z2ld"; depends=[e1071 mvtnorm]; }; @@ -4215,7 +4306,7 @@ in with self; { bioimagetools = derive2 { name="bioimagetools"; version="1.1.0"; sha256="0ws99rx7bhqi448qqy08jsl3c4vbq96gigqb85yv1mzrc82sg62p"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.1.5"; sha256="0m20947n2kzrfy8a592k1d9fg1xlv83vjf11pp4h5hhxd8fbm0w5"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS]; }; biolink = derive2 { name="biolink"; version="0.1.2"; sha256="12hpd50swnij9jzc8m6bz7iwmndgwmlyj7vnd8hvnz1gc68bjs2p"; depends=[memoise rentrez xml2]; }; - biomartr = derive2 { name="biomartr"; version="0.5.1"; sha256="05wmpq1g9zk4a5rc9zr5876ls8i1xjnw2sq777m17686fjws61q1"; depends=[biomaRt Biostrings curl data_table downloader dplyr httr jsonlite RCurl readr stringr tibble XML]; }; + biomartr = derive2 { name="biomartr"; version="0.5.2"; sha256="1q1zizfixi7rcbigxmi1vk271b704z5lxnzph9cqa3zwsv1clfxb"; depends=[biomaRt Biostrings curl data_table downloader dplyr httr jsonlite RCurl readr stringr tibble XML]; }; biomod2 = derive2 { name="biomod2"; version="3.3-7"; sha256="0mbf6j4m7vvq82l1grmznfqirj1ynr6jzzlpx0s2wjd3hdbvgzia"; depends=[abind dismo earth gbm ggplot2 MASS maxent mda nnet PresenceAbsence pROC randomForest raster rasterVis reshape rpart sp]; }; bionetdata = derive2 { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; bioplots = derive2 { name="bioplots"; version="0.0.1"; sha256="184wp1jvgf7a80srrfq72a4r1la2psr8b16kxs00v2gcbgjyvr10"; depends=[ggplot2 gplots RColorBrewer reshape2]; }; @@ -4240,9 +4331,9 @@ in with self; { bivrp = derive2 { name="bivrp"; version="1.0"; sha256="0q00k24fssvjkgpndg84vdm7w9hswq593k6yjha4pl0a8bmnv6f8"; depends=[MASS]; }; biwavelet = derive2 { name="biwavelet"; version="0.20.11"; sha256="0fmk4b8gzbq0l4n08zq4pl1csaxxxi3hpqd886ccbhmg6zn8dz01"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; - bizdays = derive2 { name="bizdays"; version="1.0.3"; sha256="16187266vz5kzqlywiai6z0qkvcwmm67vl83pdkbjpqnswxwz57l"; depends=[]; }; + bizdays = derive2 { name="bizdays"; version="1.0.4"; sha256="0vl9anlwvnnaiz67h256r386gy57fbbygjahsjaiaw8zrp84fj3p"; depends=[]; }; bkmr = derive2 { name="bkmr"; version="0.2.0"; sha256="0dk6dn73bqlvwinn3aginls4533931xcr3h59k0w60yxs3v8yakv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; }; - blackbox = derive2 { name="blackbox"; version="1.1.0"; sha256="0iqicqfg1phcnb0a9r7fghhvvdk2826r48amp5l50bf4w1lpddv2"; depends=[geometry lattice MASS nloptr numDeriv proxy rcdd Rcpp RcppEigen spaMM]; }; + blackbox = derive2 { name="blackbox"; version="1.1.2"; sha256="1r6pdd82gz7fy866abhgx7xm6c31x24yzk5gjpc6ws2m29lik3ba"; depends=[geometry lattice MASS nloptr numDeriv proxy rcdd Rcpp RcppEigen spaMM]; }; blandr = derive2 { name="blandr"; version="0.4.3"; sha256="03w1k646izbrygcsynrzrph7crpqdqn58544mmm9zxfvkmsilpmi"; depends=[ggplot2 knitr]; }; blastula = derive2 { name="blastula"; version="0.1"; sha256="0i306x0xm34r9fz7iq8frjbcvfbgg64fm5nn7mbk29a58kn91axp"; depends=[commonmark ggplot2 glue htmltools httr knitr magrittr mailR rJava stringr]; }; blavaan = derive2 { name="blavaan"; version="0.2-4"; sha256="1bjczm5i9q1h3i1sl5p31jv87hi9bj4b546fi4g338ljqqrzx6a5"; depends=[coda lavaan loo MASS MCMCpack mnormt nonnest2 runjags]; }; @@ -4262,7 +4353,7 @@ in with self; { blockmodeling = derive2 { name="blockmodeling"; version="0.1.9"; sha256="1rd8ifwv5q9yl0ayzkgi0h4k79w3r46dr164l73iz1ny77a78fn9"; depends=[]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.3"; sha256="1090vb26w6s7iqjcal0xbb3qb6p6j46a5w25f1wjdppd1spvh7f9"; depends=[]; }; - blocksdesign = derive2 { name="blocksdesign"; version="2.6"; sha256="0lxf7wkyfhcr52b2pn3ifmr0k48lr85nimr9yybdamp47rvd4yxw"; depends=[crossdes]; }; + blocksdesign = derive2 { name="blocksdesign"; version="2.7"; sha256="0pkkp1i6dsj4q4p6529qkbyy8mqmw9zhs1ww1y55yn1adkkwfd4z"; depends=[crossdes]; }; blockseg = derive2 { name="blockseg"; version="0.2"; sha256="183hjb66589qqjwf14rzdmy770biad73r0l5pkh6f4xk9xac1r62"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; }; blogdown = derive2 { name="blogdown"; version="0.1"; sha256="05cicpk8yv7v2fbq0yg8rqga88by0zr1ygr7phmsb4fzgzmv709n"; depends=[bookdown htmltools httpuv knitr rmarkdown servr yaml]; }; blsAPI = derive2 { name="blsAPI"; version="0.1.9"; sha256="1p7s799kix396fbx8ap9vy9akwpaps37awr18qbj53n9qcm74wkp"; depends=[RCurl rjson]; }; @@ -4272,10 +4363,11 @@ in with self; { bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; bmixture = derive2 { name="bmixture"; version="0.5"; sha256="144nd1s18nyii135jfr2f65szyzw8hi4zg57z85dnmr2xwas22qb"; depends=[BDgraph]; }; bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; }; - bmlm = derive2 { name="bmlm"; version="1.3.0"; sha256="0ahkfg6d10729p4vq77ly2sf667jnyf7ysp3rap87l8vgy24aris"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; + bmlm = derive2 { name="bmlm"; version="1.3.3"; sha256="0r9x4yfi583733r1qmrbcw8smw7w9crf48kwi2fwbyi5ysvpi7ms"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; - bmp = derive2 { name="bmp"; version="0.2"; sha256="059ps1sy02b22xs138ba99fkxq92vzgfbyf2z5pyxwzszahgy869"; depends=[]; }; + bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="3.4"; sha256="1588nz3h05sss94sa1d87v5si7p3316canxc2dbbdqgv51ds377w"; depends=[LowRankQP lpSolve matrixStats]; }; + bnclassify = derive2 { name="bnclassify"; version="0.3.3"; sha256="11c1sraxlz9sgyg6i257asmxx9pnf0qcblnjp0pwlh1r50h0z5wa"; depends=[assertthat entropy graph matrixStats RBGL rpart]; }; bnlearn = derive2 { name="bnlearn"; version="4.2"; sha256="1k9zfz8sc3ikrxp513cjgxw6fgxx9knz3wv5nikpcjmmrvlvwqya"; depends=[]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; @@ -4286,11 +4378,12 @@ in with self; { bodenmiller = derive2 { name="bodenmiller"; version="0.1"; sha256="0gqrjscgq4qgk7yl32w0965yscc1py9klr49s8q8hkzyihlwzim2"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; }; bold = derive2 { name="bold"; version="0.5.0"; sha256="0gdmb3zsspcp594d32yzqhdpw4dwg7a3pfm7kgbghz368yw662gl"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; + bomrang = derive2 { name="bomrang"; version="0.0.7"; sha256="0az3vl2qmbb1v0wjr75lg5qypzfi3vgcn48k4ma3q8ack0nwpm1c"; depends=[curl data_table dplyr foreign httr janitor jsonlite magrittr rappdirs raster readr rgdal rlang rvest tidyr xml2]; }; bookdown = derive2 { name="bookdown"; version="0.5"; sha256="0zm63kr4f4kja4qpwkzl119zzyciqj7ihajfqgfjpgb4dzaiycxp"; depends=[htmltools knitr rmarkdown yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.3.0"; sha256="1297hwxkc1i3h706p135704rxc2hhkppmwkq5b04d7d03a1kv9pn"; depends=[bookdown knitr yaml]; }; boolean3 = derive2 { name="boolean3"; version="3.1.6"; sha256="00s6ljhqy8gpwa3kxfnm500r528iml53q364bjcl4dli2x85wa9p"; depends=[lattice mvtnorm numDeriv optimx rgenoud rlecuyer]; }; boostSeq = derive2 { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; }; - boostmtree = derive2 { name="boostmtree"; version="1.1.0"; sha256="1k6cwiz6354xgmqyadm4vfrl4szcr2c9mgxgmmngdc28p7sm50i7"; depends=[nlme randomForestSRC]; }; + boostmtree = derive2 { name="boostmtree"; version="1.2.0"; sha256="0sn22imcq8w9c1347d1pd680xlkh47s687100y6mh3xrwa1x5nsj"; depends=[nlme randomForestSRC]; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; boot = derive2 { name="boot"; version="1.3-20"; sha256="0ai1qpm0p4z07xr0dvag8sdn9jrxcwanrsk9khzmww094jvr1jxd"; depends=[]; }; bootES = derive2 { name="bootES"; version="1.2"; sha256="0hcaw1v80zspdsy4wr464lmgq33807i2f6n2dc3r7qqwa80g4zz0"; depends=[boot]; }; @@ -4298,13 +4391,13 @@ in with self; { bootRes = derive2 { name="bootRes"; version="1.2.3"; sha256="0bb7w6wyp9wjrrdcyd3wh44f5sgdj07p5sz5anhdnm97rn1ib6dz"; depends=[]; }; bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; - bootnet = derive2 { name="bootnet"; version="1.0.0"; sha256="101a1d7x4f09j175n7n3czzihqnpl1pia0rk2q08a6s2zbl1z44m"; depends=[abind corpcor dplyr ggplot2 gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm parcor qgraph relaimpo tidyr]; }; + bootnet = derive2 { name="bootnet"; version="1.0.1"; sha256="1r5kbcycdlb8g4zs5vsrmcxl20a6x2kj47ybz6h1s83rqiylxg1b"; depends=[abind corpcor dplyr ggplot2 gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm parcor qgraph relaimpo tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.0.3"; sha256="0jkpci97chbvlfkcbbj3gm2dnj5aiwfrh739kd4fa0zra4ac1adh"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2017.2"; sha256="08lmsy7k8wsgv89yc904c6fidcymr1ma2ry4fl0p69p21v4iiwa4"; depends=[]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; - boral = derive2 { name="boral"; version="1.3.1"; sha256="0kwgjfp4r8a2mph83n3ljlqr7077i4f8dvbk2kz80n5jq48v84j0"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; + boral = derive2 { name="boral"; version="1.4"; sha256="1risn5f48l5rmrx5pyifbrcbh92v94siqlwwiz2jljnhgsqgc1d4"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boxcoxmix = derive2 { name="boxcoxmix"; version="0.13"; sha256="16hqhdlh04v7dfk44anvsa9vp2yziwwf7xccm9wknqpbbwif39p2"; depends=[qicharts statmod]; }; @@ -4324,6 +4417,7 @@ in with self; { brainR = derive2 { name="brainR"; version="1.2"; sha256="1515v6kk73p4s3vrnkpkilfxfyqrf7b762sq6j364ygsyfybvh2z"; depends=[misc3d oro_nifti rgl]; }; brainwaver = derive2 { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; }; brant = derive2 { name="brant"; version="0.1-3"; sha256="1h6aygqcdn2wmxl8mgpq6w2rpr0asqw521i0bkgl37cwzc8sk3c0"; depends=[MASS]; }; + brazilmaps = derive2 { name="brazilmaps"; version="0.1.0"; sha256="1nvd8x4m4m3966qph6390kqwpsrv7vy4yf6pam98xxkjbl9a41nf"; depends=[dplyr ggplot2 magrittr sf sp]; }; brea = derive2 { name="brea"; version="0.1.0"; sha256="0jawpl4d7himydb9z4kqpa7s6b7ghw9yp5j6xvzilbka0agpazck"; depends=[]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; breakaway = derive2 { name="breakaway"; version="3.0"; sha256="0y3h7gifv279z3x77jmr97c0i3vy58m5wsr8pa2vyn26m02rbkpc"; depends=[]; }; @@ -4339,10 +4433,10 @@ in with self; { bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; bridgesampling = derive2 { name="bridgesampling"; version="0.2-2"; sha256="0sz3svkfwn0xf8z2h3mhz5lnybfph6jky0p1rzpa2adxwg0fsvjg"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; - briskaR = derive2 { name="briskaR"; version="0.1.0"; sha256="0fx254pc250jv53kmd6miw8blcp43c72myah9g5ns2s84pcdmx6h"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; + briskaR = derive2 { name="briskaR"; version="0.1.1"; sha256="0w614lb94vim6wlzj13gnfgkq0vg9fjlvwvvs11pnqq501qn2hzl"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.5"; sha256="14dnmh062fw11bm236ilaqs6ss4ywajvsk3sxj0zwqk2bjf7y7vh"; depends=[boot brglm MASS profileModel Rcpp]; }; brm = derive2 { name="brm"; version="1.0"; sha256="0h4kgig28hkqv1amadznc0n9256dx613rxbn8s8si11ygx79x2dd"; depends=[]; }; - brms = derive2 { name="brms"; version="1.9.0"; sha256="0lkkgabcy7jink5xr85q1r6m8gpmvzclpd7m63g4kaqblzi4xwx5"; depends=[abind bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nlme Rcpp rstan rstantools shinystan]; }; + brms = derive2 { name="brms"; version="1.10.0"; sha256="19wv02kgrfxnbxmhf4gxwls9dkba6qnnhsf6vcgmgw7q80dh533c"; depends=[abind bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nlme Rcpp rstan rstantools shinystan]; }; brnn = derive2 { name="brnn"; version="0.6"; sha256="0q3f3cbl89hgpav7bn54s13cysgz8fi0zm8byc9rgz0sqkjrxval"; depends=[Formula]; }; broman = derive2 { name="broman"; version="0.65-4"; sha256="0cmcyifp49c1m3sawcs5ijjl218wk4sffvr68dfi3y9vh58f5iss"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; broom = derive2 { name="broom"; version="0.4.2"; sha256="0i2s3jbi0v5xhbqkmms4f17i3x9s6lan4bj521qmxwiwc89r8h4z"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; @@ -4369,8 +4463,8 @@ in with self; { bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; - bupaR = derive2 { name="bupaR"; version="0.2.0"; sha256="0kwhb4izhlay0lc768xsqc85mz94lphn6lasr208pl0v0ryddda5"; depends=[data_table dplyr magrittr miniUI shiny]; }; - burnr = derive2 { name="burnr"; version="0.2.0"; sha256="032ymd3c4bpljfj3g52fzmw0dpy3idpmlmz1780743mm3fjl04bx"; depends=[ggplot2 MASS plyr reshape2]; }; + bupaR = derive2 { name="bupaR"; version="0.3.0"; sha256="0732h95pv8a235qvaydfaziwbq0q2gxmn4ffh7n1ar4azkgc94l3"; depends=[data_table dplyr magrittr miniUI purrr shiny]; }; + burnr = derive2 { name="burnr"; version="0.2.1"; sha256="138n52rwlkkxpbrz65cfcv9rp4vp4c17w9ydpqfk9fa8b3sqhhsn"; depends=[ggplot2 MASS plyr reshape2]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; @@ -4383,7 +4477,7 @@ in with self; { c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="0.2"; sha256="13sp3wywv82wgi1vsbxwn68v9xigy0fi3mcwyxjmmgmnsxns2fza"; depends=[lme4 Matrix]; }; cIRT = derive2 { name="cIRT"; version="1.2.1"; sha256="1i43pqlyzykyd1a6abg1yi7ai9ay7d2jkvnw1sa4c6q07jk56d89"; depends=[Rcpp RcppArmadillo]; }; - cOde = derive2 { name="cOde"; version="0.2.2"; sha256="0v26ilbkg2af4mgn639mnslvvwlsq6il3pxx5brwdsd4816saav4"; depends=[]; }; + cOde = derive2 { name="cOde"; version="0.3"; sha256="1r49q7qansn86wrxbhxqnn1dccd9av4lh4h5pn9kk42pls9q60nf"; depends=[Rcpp RcppArmadillo]; }; cSFM = derive2 { name="cSFM"; version="1.1"; sha256="1znxsqa8xdifmryg7jiqbpzm837n4n862kg5x1aki52crc4zyk3k"; depends=[MASS mgcv mnormt moments sn]; }; ca = derive2 { name="ca"; version="0.70"; sha256="0730c7nk49hz0k1i5nnhq2j3wbhrlhr1qvb50mk8vmqkbhb1pz1l"; depends=[]; }; caRpools = derive2 { name="caRpools"; version="0.83"; sha256="10m7fw1zfr9i6v2qg235diwf3fmfr88incxnqpvnhmqcn082mxrp"; depends=[biomaRt DESeq2 rmarkdown scatterplot3d seqinr sm VennDiagram xlsx]; }; @@ -4392,7 +4486,7 @@ in with self; { cabootcrs = derive2 { name="cabootcrs"; version="1.0"; sha256="0a6y04jq837k1pk8b9nhgz7rima7s8jid6vdjyfvrqshgaiabg1q"; depends=[]; }; cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; caesar = derive2 { name="caesar"; version="0.1.0"; sha256="1l0z64fsifx37j2h61kzygbwr3z3cncn48znrpb5cq10ma42igqf"; depends=[binhf]; }; - caffsim = derive2 { name="caffsim"; version="0.2.0"; sha256="0ai6glh21b0mrprz3haib44czkby8c50qp6sma47lb09s578333c"; depends=[dplyr ggplot2 mgcv]; }; + caffsim = derive2 { name="caffsim"; version="0.2.2"; sha256="00bkgmmqrydpji2pvhcchgl2p8w5ksby4g80i3h76q0bm2325w9h"; depends=[dplyr ggplot2 markdown mgcv shiny tibble tidyr]; }; cairoDevice = derive2 { name="cairoDevice"; version="2.24"; sha256="1xbjxz1cxnwzvb6hjns2kk97krmx24chpyvjaa25xwmvy4x6qcps"; depends=[]; }; calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; }; calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; }; @@ -4405,9 +4499,9 @@ in with self; { camtrapR = derive2 { name="camtrapR"; version="0.99.8"; sha256="06sl3rlzgjf3yq9y0sg664xc0xfxwlvvd5w4wr5946h6kwvnhih4"; depends=[overlap rgdal ritis secr sp taxize]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; - candisc = derive2 { name="candisc"; version="0.7-2"; sha256="0sbvngpyni4pagqb5xqjnk5yjd391rdjqq7aypnm2wd3i1am90hm"; depends=[car heplots]; }; + candisc = derive2 { name="candisc"; version="0.8-0"; sha256="0hq5bwvq791rhff2c29xdjbbkcyydii1lbsy05c1fapyn88ir0mi"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="0.1.0"; sha256="0g3sqc81qw8jx6v2p6makclccnvhshimwlhk2cabq20rfs8npgbm"; depends=[CHNOSZ colorspace xtable]; }; - canvasXpress = derive2 { name="canvasXpress"; version="0.16.7"; sha256="129ks8iaakcci0s61xnajyhgzrmkm2dznnrg4gdr0gvbj8wqamkx"; depends=[htmlwidgets]; }; + canvasXpress = derive2 { name="canvasXpress"; version="0.17.2"; sha256="138385yc84py49fgq5b074c3f52s9hvcqsvlmfr9zlcj8wcs17mi"; depends=[htmlwidgets]; }; cape = derive2 { name="cape"; version="2.0.2"; sha256="0ngm9scd3f2zcy7gy0lqk05cgbfrhhcss3mj5g6bj0byhgwd7msn"; depends=[corpcor doParallel evd fdrtool foreach HardyWeinberg igraph Matrix qpcR RColorBrewer regress shape]; }; caper = derive2 { name="caper"; version="0.5.2"; sha256="1l773sxmh1nyxlrjz8brnwhwraff826scwixrqmgdciqk7046d35"; depends=[ape MASS mvtnorm]; }; capm = derive2 { name="capm"; version="0.11.0"; sha256="1yw7h1r5m4md8yv0fn1j4wxvhwybifqyvrn8ip3fl32kxbwsmnvz"; depends=[deSolve FME ggplot2 maptools reshape2 rgdal shiny sp survey]; }; @@ -4417,25 +4511,26 @@ in with self; { capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; car = derive2 { name="car"; version="2.1-5"; sha256="1bm0ks9ga60z3izgq0d4kvirr9v4yf1820d1wznkihnbb55bc3m6"; depends=[MASS mgcv nnet pbkrtest quantreg]; }; + carData = derive2 { name="carData"; version="3.0-0"; sha256="1ggz4py77bgwlpl6rsv7vlxj1kjs6c10dskizwwjps910r76pd79"; depends=[]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; cardidates = derive2 { name="cardidates"; version="0.4.7"; sha256="0dxb2941w56s479laf315hqh9iv3k2l1ds7k8hdl9akcacagjgs2"; depends=[boot lattice pastecs]; }; cardioModel = derive2 { name="cardioModel"; version="1.4"; sha256="1a2nvn4a4zc89pb01m20pxqgbj0ypzzvx9w2vfzwly1kzkhvc9hr"; depends=[lubridate nlme]; }; care = derive2 { name="care"; version="1.1.10"; sha256="00h36by40v60mqzbf615a99sdfz0i42i57wybxrcm7y1y2la0da8"; depends=[corpcor]; }; - caret = derive2 { name="caret"; version="6.0-76"; sha256="1w31xzpmj8p6r6s7s1vwnjxainq54bbh4cqm177ba0myv69hh8cc"; depends=[car foreach ggplot2 lattice ModelMetrics nlme plyr reshape2]; }; + caret = derive2 { name="caret"; version="6.0-77"; sha256="05c504567s2nppzfgi36mhszbym2pr80nf50dgxcxfx030721v5y"; depends=[foreach ggplot2 lattice ModelMetrics nlme plyr recipes reshape2 withr]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.0"; sha256="0v9gyp81abrbm8b79ch927iqh0v84q5222bvg1wx8n65vx59sx42"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.1"; sha256="1f6g85qgd53wzha8kfq8x29lb5wilgxm6bj49znzd1qj03nlnpna"; depends=[dplyr lazyeval magrittr pander tidyr]; }; cartogram = derive2 { name="cartogram"; version="0.0.2"; sha256="055aq2fmbx6ypyqsj427l37px8fld4b9bmc2kcmsi6fmnncb5pxa"; depends=[rgeos sp]; }; - cartography = derive2 { name="cartography"; version="1.4.2"; sha256="1bqadjn1h9xlmswjsylipgni2f78lld4v0y0vybi0cd68m22wxp2"; depends=[classInt raster rgeos rosm sp]; }; + cartography = derive2 { name="cartography"; version="2.0.1"; sha256="0ji5igf6vs07aagmj7lwarlmb32jjk5fja9a975cpd38fsj9a5v2"; depends=[classInt raster Rcpp rgeos rosm sf sp]; }; carx = derive2 { name="carx"; version="0.6.2"; sha256="1wijkpbv2x75ay9pba4sjazjpalrd31zclnnansmhghf1wiizciq"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; caschrono = derive2 { name="caschrono"; version="2.0"; sha256="091zqin2cr9p50zmifrb52dxy10zflm7f0lr9nissy589qjdd0gk"; depends=[Hmisc zoo]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.7"; sha256="1xd7mlnknjrilxcp0w0b36aaiql6jdqgyin1823r2x8vl9r4aqns"; depends=[]; }; casebase = derive2 { name="casebase"; version="0.1.0"; sha256="0216qzyxv44cl9f806lal9lx4n0zzr9csx8ggyjva04h5iiqrq6w"; depends=[data_table ggplot2 survival VGAM]; }; - castor = derive2 { name="castor"; version="1.1"; sha256="15ma7zhd53x2ncmnaqn6g1phsr4zbhx62g0c7lm6yw9amdcfyxfn"; depends=[naturalsort Rcpp]; }; + castor = derive2 { name="castor"; version="1.2.1"; sha256="1pgpcsw272spf0bvrq1nmyxh8ih0hccj82k91z09nzd1i74yz46g"; depends=[naturalsort Rcpp]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; - catR = derive2 { name="catR"; version="3.12"; sha256="15db9mfpnrrghiksfrfqqwfhw6fwlqlabc12xq1szg010k343dvb"; depends=[]; }; + catR = derive2 { name="catR"; version="3.13"; sha256="1xzxgf9d33h46qxz6a8d71mi673yzdnvxcxj073z7y19hjss3pkw"; depends=[]; }; catSurv = derive2 { name="catSurv"; version="1.0.3"; sha256="1qjmjdmc81inim5kpwh4k2r3cffmkyp2wpcqqzv731hciqrad8a8"; depends=[BH ltm Rcpp RcppArmadillo RcppGSL RcppParallel]; }; catdap = derive2 { name="catdap"; version="1.2.4"; sha256="0vvrlbdjml1cxf6jafjycv0k3kzd2xy1zcwjv0rh3cswxmvpnh3a"; depends=[]; }; catdata = derive2 { name="catdata"; version="1.2.1"; sha256="0fjylb55iw8w9sd3hbg895pzasliy68wcq95mgrh7af116ss637w"; depends=[MASS]; }; @@ -4446,11 +4541,12 @@ in with self; { catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catnet = derive2 { name="catnet"; version="1.15.0"; sha256="0z2ps2wb33hc0dg08v70gvpy2zibr6kqjjv90g07hkmrhp6zjk5n"; depends=[]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; + causalMGM = derive2 { name="causalMGM"; version="0.1.1"; sha256="13qx71rfc6m7mvlpwma7ks09f3mlxknxw3jlv3b4iq5pjs8f1v5r"; depends=[rJava]; }; causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; - causaleffect = derive2 { name="causaleffect"; version="1.3.4"; sha256="186ndqlz501zzmls0vbfprqbfgz0faqr2l64zr8i7j5asxmwzija"; depends=[ggm igraph XML]; }; + causaleffect = derive2 { name="causaleffect"; version="1.3.5"; sha256="12acm5k1nx6axhxfsiqwyaplfl5z8zzjr3kwk1hdzdrmxni6vhxs"; depends=[ggm igraph XML]; }; causalsens = derive2 { name="causalsens"; version="0.1.1"; sha256="1z92ckqa07ajm451wrldxx9y43nawlvj2bsz0afxc9mrhjwjg5dh"; depends=[]; }; cba = derive2 { name="cba"; version="0.2-19"; sha256="0nyssc7j5rkv1gcgx4cg31hwc37wd5k3yn9s2k22ffxlnrknss2l"; depends=[proxy]; }; - cbanalysis = derive2 { name="cbanalysis"; version="0.1.0"; sha256="170rhycd78k8ivibvaa7r5hx64wpqwb067s182iwx51fb2yf01a7"; depends=[]; }; + cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbar = derive2 { name="cbar"; version="0.1.2"; sha256="1y7p0ygxy5c53ms5ylrvw4zlj66z8sj4py21q018g2i6cmwb5vc5"; depends=[Boom bsts dplyr ggplot2 magrittr]; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.2.1"; sha256="0nsg0fzaqhzv8r2lwz5xlybwgv25c0a2hid91ky95yaqvnjrp6mq"; depends=[jsonlite whisker yaml]; }; @@ -4462,28 +4558,31 @@ in with self; { cccp = derive2 { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; }; cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; }; ccda = derive2 { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; }; - ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.3"; sha256="0b5rm17zqf4w22vfjhp13wjqrds7f6mbvmd0kazxrnrnb10799a3"; depends=[Rcpp sparsebnUtils]; }; + ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.4"; sha256="192pfsk6yw26b6f23qgkxslsfwpav8zv6js46i61vj2wa10f4mf2"; depends=[Rcpp sparsebnUtils]; }; ccgarch = derive2 { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; }; - cchs = derive2 { name="cchs"; version="0.3.0"; sha256="0163qvy1k39bwbbidr7wj6cs0nv8m8nh0as9532j8mshq14d0i8c"; depends=[survival]; }; + cchs = derive2 { name="cchs"; version="0.4.0"; sha256="1dahiyn3rj65w56hmhqdxvxh7vkjy5rxlkp1l59aq5iba21ldsyj"; depends=[survival]; }; cclust = derive2 { name="cclust"; version="0.6-21"; sha256="1n5hh0017bcq8ck52qq89jm9zgdfpmiksrypsnv2vvhk3nr0s91c"; depends=[]; }; + ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; }; cctools = derive2 { name="cctools"; version="0.1.0"; sha256="1x35dxmyyjbf3v2hsbbnq2f88zy5sk6qz3xzx9p2kg5wi5187xl5"; depends=[qrng Rcpp RcppArmadillo]; }; cda = derive2 { name="cda"; version="2.0.0"; sha256="1vq90z6kafiz5b884hxsz3lg8a0zis1n475lmvwlymcam5rpgjrc"; depends=[randtoolbox Rcpp RcppArmadillo reshape2 statmod]; }; cdata = derive2 { name="cdata"; version="0.1.5"; sha256="1pqy186x7s3kdiz07b963n57jh83acs9ri0k1h44gfjrywj8jdyx"; depends=[dplyr tibble tidyr wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; cdcfluview = derive2 { name="cdcfluview"; version="0.5.1"; sha256="0k63hrx3cc04xpi2sxl5g8mn7lc7rh4q33mj3filyiyppj16jixf"; depends=[dplyr httr jsonlite purrr readr V8 xml2]; }; cdcsis = derive2 { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; }; - cdfquantreg = derive2 { name="cdfquantreg"; version="1.1.1"; sha256="17ghqcxnaz25n0qrar1bs2i4hcpn1gdzdv53r4krivdzkbi9p90a"; depends=[Formula MASS pracma]; }; + cdfquantreg = derive2 { name="cdfquantreg"; version="1.1.3"; sha256="08l9kg4rclgh29r8cyk3d0619k4mkw2vj1phiyww4qr1dn5ssnda"; depends=[Formula MASS pracma]; }; cdlTools = derive2 { name="cdlTools"; version="0.11"; sha256="0jqr0j6hwqwx574659i3mfzf4hcmmxfd3x28d52dwgpwsv0r10gn"; depends=[raster RCurl rgdal XML]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; + cdparcoord = derive2 { name="cdparcoord"; version="1.0.0"; sha256="0a08rpc7chqbix10jimjh46dy6val97mrzqk972pq446b6ci95sn"; depends=[data_table freqparcoord magrittr partools plotly]; }; cds = derive2 { name="cds"; version="1.0.3"; sha256="1h34k96h7ajkaqsw4dlqri63hrbnshaqwrdl74wlgycdlbvrqj05"; depends=[clue colorspace copula limSolve MASS]; }; cec2005benchmark = derive2 { name="cec2005benchmark"; version="1.0.4"; sha256="0bwv63l31hiy63372nvnyfkpqp61cqjag0gczd2v2iwsy3hyivpd"; depends=[]; }; cec2013 = derive2 { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; }; - celestial = derive2 { name="celestial"; version="1.3"; sha256="0icsrpw8y7r0ls8ch5b25fl4rnvs6x5y2wscmcmpp4fa4x64qqg6"; depends=[RANN]; }; + celestial = derive2 { name="celestial"; version="1.4.1"; sha256="0cvfka5lj0sj9cd7xs68szhckzfm6cgxwxim1nd530s6gxh0l7kz"; depends=[NISTunits pracma RANN]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; }; cellWise = derive2 { name="cellWise"; version="1.0.0"; sha256="1cpkz256z6ngqdd1wa0ajyjcl0j1xln2f0hwsw24wfzgb8sdj6ac"; depends=[ggplot2 gridExtra matrixStats reshape2 scales]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; cem = derive2 { name="cem"; version="1.1.17"; sha256="1jnhsrc1jhax3zlw9ynla7g9z5i4w01iar7f7hmv92kp1cwh8rbd"; depends=[combinat lattice MatchIt nlme randomForest]; }; cems = derive2 { name="cems"; version="0.4"; sha256="0mk02m702xfr1gh0l3973z1hdpncgjl2vfd1k1iss5s64k56gs4q"; depends=[plotrix rgl vegan]; }; + cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; censReg = derive2 { name="censReg"; version="0.5-26"; sha256="1g69261ajha9p762xg2a5pj127b9pfws6ylpiqhjv7h96n12f2pi"; depends=[glmmML maxLik miscTools plm sandwich]; }; @@ -4516,7 +4615,7 @@ in with self; { cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; chebpol = derive2 { name="chebpol"; version="1.3-1789"; sha256="1505zdzvc9drw7n8qw5jmqligjgp5gwwki4wlk8dsm0p3p06dvd2"; depends=[]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; - checkmate = derive2 { name="checkmate"; version="1.8.3"; sha256="04rxabzamhv6ybynx627sxk02qvq8znkv0y10vmq67xx6pxhqvla"; depends=[backports]; }; + checkmate = derive2 { name="checkmate"; version="1.8.4"; sha256="1xpq73myr39i33mwihvy494sam77hb3z15yr172a31d8wn1qi53g"; depends=[backports]; }; checkpoint = derive2 { name="checkpoint"; version="0.4.1"; sha256="0hp37scj0iaivwk5w2vprq2yzqfpg6zi19nzaxzaz8w2sk8dql7v"; depends=[]; }; cheddar = derive2 { name="cheddar"; version="0.1-631"; sha256="0s6v3xcpv8ppgx6q6h2hgrjcf3f3i87kmylnr9q9zhry7729aiyn"; depends=[]; }; chemCal = derive2 { name="chemCal"; version="0.1-37"; sha256="1sbmr8arczc65nzbgr5rfk2mbbnk6h60ni9cd9jngbhgdf0g1scw"; depends=[]; }; @@ -4525,11 +4624,11 @@ in with self; { cherry = derive2 { name="cherry"; version="0.6-11"; sha256="0ixrzbzg559h0qb33b9158rk6w6as2b34b7iq5vzm429cpyzl7l8"; depends=[bitops lpSolve Matrix slam]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; - childsds = derive2 { name="childsds"; version="0.6.5"; sha256="17i64vcwlhcsmwbsqcrjz9j8m6bacd8ms2ijqf8xc1q6k3nk7pcj"; depends=[boot class dplyr gamlss gamlss_dist magrittr tidyr]; }; + childsds = derive2 { name="childsds"; version="0.6.6"; sha256="0k2xiq4jgs206fxpj6hvfyc79cnsl3qfghjqhkra72hpj74ii4y9"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr reshape2 tibble tidyr]; }; chillR = derive2 { name="chillR"; version="0.66"; sha256="1qw9l3drw3r4an1jy2bckaslwla3s5fvpqr7ahvd2m6alx05b0k6"; depends=[fields httr Kendall pls raster readxl RMAWGEN sp XML]; }; - chinese_misc = derive2 { name="chinese.misc"; version="0.1.6"; sha256="0mm21mla6wxa62k2hq5cp6489n41a8n11l3vzrjj5a6wma9ddc2q"; depends=[jiebaR Matrix NLP Ruchardet slam stringi tm]; }; + chinese_misc = derive2 { name="chinese.misc"; version="0.1.7"; sha256="1asv4538p42r8mhvkcp0f2h75nq3bwm0v5arwc7masdmpp4fqayn"; depends=[jiebaR Matrix NLP Ruchardet slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; - chngpt = derive2 { name="chngpt"; version="2016.7-31"; sha256="1hjqdkqai6aij3giarbxasijipb376qm081ri9w6snd5gy6izzsi"; depends=[boot kyotil MASS survival]; }; + chngpt = derive2 { name="chngpt"; version="2017.08-28"; sha256="0dpfkpp79wrxlfa1x6jhz3lfrbdm1m4h04fiwn8fys75yn1inkcy"; depends=[boot kyotil MASS survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-1"; sha256="07nnqqczi9p3cffdijzx14sxhqv1imdakj7y94brlr5mbf5i4fl4"; depends=[AlgDesign]; }; cholera = derive2 { name="cholera"; version="0.2.1"; sha256="0w213qlnkwbs7y1z5kmxicrbimkqlws46w12vadghf96rn1pb4fv"; depends=[deldir HistData igraph pracma RColorBrewer scales sp]; }; choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; @@ -4552,6 +4651,7 @@ in with self; { citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; citr = derive2 { name="citr"; version="0.2.0"; sha256="1nzn0yw74k6zkwzb6spfzqkj3cbx6ry6ypbsnhy6w2flabnnvy4v"; depends=[assertthat curl miniUI RefManageR rstudioapi shiny yaml]; }; + civis = derive2 { name="civis"; version="1.0.2"; sha256="1y4f7sqr2wxibr9kfvpq1b743c9b1zi5w8ir67l9r2dx65fchypq"; depends=[DBI dbplyr devtools dplyr ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; }; cjoint = derive2 { name="cjoint"; version="2.0.5"; sha256="0q2mp790maphiz77lw1lashgfcl2a174mmxw65hfvvv7m49plcy3"; depends=[ggplot2 lmtest Matrix sandwich survey]; }; ck37r = derive2 { name="ck37r"; version="1.0.0"; sha256="0nn2sfsfs8mhgjrz0ghn041ybhj2qim4rs3lkci7s4n95c8hbgdi"; depends=[caret cvAUC doParallel doSNOW foreach ggplot2 pryr randomForest RANN reader RhpcBLASctl ROCR snow stringr SuperLearner tmle]; }; ckanr = derive2 { name="ckanr"; version="0.1.0"; sha256="1cvn0cih763f0ppl1y90vnwj3cgqyb7az89sn12nyn2qb6igiqyl"; depends=[httr jsonlite magrittr]; }; @@ -4574,8 +4674,8 @@ in with self; { cleangeo = derive2 { name="cleangeo"; version="0.2-2"; sha256="1bhpn53v36652mwg2ba2a6cs34slb7i0df2ibssyr2lnx5gciq4i"; depends=[maptools rgeos sp]; }; cleanr = derive2 { name="cleanr"; version="1.1.3"; sha256="0vf2c2inb729kzmpxaznqa2zwj80j1ix9198gc36zq41ag5pd7jk"; depends=[checkmate]; }; clere = derive2 { name="clere"; version="1.1.4"; sha256="1nk3chcnaa4y1c5rr6c3bapvi106ikbk9grqcq6s6j0imny1jp4a"; depends=[lasso2 Rcpp RcppEigen]; }; - clhs = derive2 { name="clhs"; version="0.5-6"; sha256="0m7pw655d6jidrppk1z84z35n93k1alwq43jh28lf81ydw8finma"; depends=[ggplot2 plyr raster reshape2 scales sp]; }; - clickR = derive2 { name="clickR"; version="0.2.9"; sha256="1wzqfxwi0jala9n5ai1f0mi8gvmfa2f6n0yn766ajzn6y6vd8m8v"; depends=[beeswarm ClustOfVar lme4 lmerTest lqmm ordinal ReporteRs xtable]; }; + clhs = derive2 { name="clhs"; version="0.5-7"; sha256="0n7zy8wf78lka1l0zm42zxwi24bvavfy3irfqcnz5nslqkg61il2"; depends=[ggplot2 plyr raster reshape2 scales sp]; }; + clickR = derive2 { name="clickR"; version="0.3.29"; sha256="15z6gv3gfimhzhn0zm1n8s931mnx05f5hd04wh32xc9n432pb0ik"; depends=[beeswarm boot lme4 lmerTest ReporteRs xtable]; }; clickstream = derive2 { name="clickstream"; version="1.2.1"; sha256="1wan098mp2ml194al616h9qvv69q5l19218ja2x9j1qdq9dgp978"; depends=[arules ClickClust data_table ggplot2 igraph linprog plyr reshape2 Rsolnp]; }; clifro = derive2 { name="clifro"; version="3.1-4"; sha256="1llzdcm4h060pajbh3avn209b717gipxw67rslpbxl1xa4vg1rdn"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; @@ -4603,21 +4703,23 @@ in with self; { clues = derive2 { name="clues"; version="0.5.9"; sha256="0znlsbfmnz5wkp2cswrkjbgchdmmf7h78mv2zwx382m9n9n9hshy"; depends=[]; }; clusrank = derive2 { name="clusrank"; version="0.5-2"; sha256="168xad5dyz46yxm139q09n9vp1304yrhikxz5bcfzhm3psyv5fbf"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.0.6"; sha256="0hmj85byw1j1b1crb7nj12wz0rddp5cg21jg1dwg7b0mn5xvy981"; depends=[]; }; + clustEff = derive2 { name="clustEff"; version="0.1.1"; sha256="149x9m9x1yxh48ky54gyzps4pdh4jq36bz59ri3xd6v19i8r1ws3"; depends=[cluster fda qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; - clustMixType = derive2 { name="clustMixType"; version="0.1-25"; sha256="0pxdyay65fgarj166vvmzzjh5b6k05hdx1mv8237w16gvqa2i1y8"; depends=[]; }; + clustMixType = derive2 { name="clustMixType"; version="0.1-28"; sha256="0g7cw89pk5vmws4mwsd73z288g9dxvl1q81kp00x5h2vk2nzdzcn"; depends=[RColorBrewer]; }; clustRcompaR = derive2 { name="clustRcompaR"; version="0.1.0"; sha256="1md1ra18q1iga01q12jyy9va4qyvzlybvbdrdfy2kxhh82w057ww"; depends=[dplyr ggplot2 ppls quanteda tidyr]; }; cluster = derive2 { name="cluster"; version="2.0.6"; sha256="1z4gbz7chxxi4ly6c0yjlikwgf8aa8dlg05cn5cd6pjr21zvh97l"; depends=[]; }; cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; clusterCrit = derive2 { name="clusterCrit"; version="1.2.7"; sha256="13smdm8dmp4795qqn8an3k22l7xs4i4kgazyjzxdbzkg742akk7q"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; - clusterPower = derive2 { name="clusterPower"; version="0.5"; sha256="1g2qpvizyk4q3qlgvar436nrfqxwp5y8yi2y6rch9ak5mbg3yzqb"; depends=[lme4]; }; + clusterPower = derive2 { name="clusterPower"; version="0.6.111"; sha256="1mwq188x9d495my75cdcahfjm3w46cas9jqxks5c0j63395cw9g3"; depends=[lme4]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; }; clusterSEs = derive2 { name="clusterSEs"; version="2.4"; sha256="10xlcmmsrca8zwis94cv3pafp9k5ykbq9fnmadbhk0ppibndyjak"; depends=[AER Formula lmtest mlogit plm sandwich]; }; - clusterSim = derive2 { name="clusterSim"; version="0.45-2"; sha256="0mf0qy902v4aqszcapk3c0j2b6kj66krxz7s6adpqzwhwx975zfi"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; + clusterSim = derive2 { name="clusterSim"; version="0.46-2"; sha256="1l8hcqkz2p8gbnfz8fdb64fk0mbfxx8b725f3pz77c7bjrx4s4l1"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; + clustermq = derive2 { name="clustermq"; version="0.7.0"; sha256="16z90z8i7vbcqw09ka8ivs9b6qg8g91ybaqvzl3yfbqfyvn080gg"; depends=[infuser narray pryr purrr R6 rzmq tibble]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; @@ -4643,14 +4745,14 @@ in with self; { coala = derive2 { name="coala"; version="0.5.0"; sha256="1yk2cfv73wng1bm00v1xfd208lvc9r7nx1w2rgdgw9m9yv0mw89f"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-3"; sha256="0f1fkpmqq142yrqzbqv11s5q4jkq7dilmrllcns871hc6vah6ikd"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="2.1.0"; sha256="1a0ynwbnfndgyhihgd73l4cdhivsva8nzimqb2bda425n0vligpn"; depends=[ggplot2 ggstance]; }; + cobalt = derive2 { name="cobalt"; version="2.2.0"; sha256="1rq4mdyq10slmpqxy0h9dpdn0xa9sqppz902rad7h6mrh56bd989"; depends=[ggplot2 ggstance]; }; cobs = derive2 { name="cobs"; version="1.3-3"; sha256="1pqvz7czcchri4x79g78hbwyagb3bqzdqb047zkbdinyz067c7kb"; depends=[quantreg SparseM]; }; cocor = derive2 { name="cocor"; version="1.1-3"; sha256="106zyrrypil8jyg0pva5zj4hgb53z81nca3d0mh2q3j55zq3wl12"; depends=[]; }; cocoreg = derive2 { name="cocoreg"; version="0.1.1"; sha256="0jrrkak964pl1vih592jgqgl6bw08j0fa1rh3j85x64bqq4m7278"; depends=[abind CCAGFA combinat e1071 ggplot2 glmnet gridExtra MASS multiway pls reshape RGCCA]; }; cocorresp = derive2 { name="cocorresp"; version="0.3-0"; sha256="1r1ssz0cip1gk52nkbr1kpz8gwrg6lwri8ymk41xj2adlsp576v2"; depends=[vegan]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-1"; sha256="14a4a8df4ygj05h37chmdn8kzcqs07fpbflxfrq530563mrza7yl"; depends=[lattice]; }; - coda_base = derive2 { name="coda.base"; version="0.1.6"; sha256="07y92k12bfxwmcjrp4g6xmjjf99jpxsnk1isficpyr5zz4hpl37q"; depends=[MASS Rcpp RcppArmadillo]; }; + coda_base = derive2 { name="coda.base"; version="0.1.7"; sha256="1rjw5d76vxl0fx0675q994l8wwbfv8az5kzqj4g9xmgbj8iwdhan"; depends=[MASS Rcpp RcppArmadillo]; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; codep = derive2 { name="codep"; version="0.6-5"; sha256="18da81wja7z9gnn11xiwi7cg43mrj4w2kjkk8s780krbycnfsn5p"; depends=[]; }; codetools = derive2 { name="codetools"; version="0.2-15"; sha256="0h7sjmvvsi35041jp47cxhsqzgf1y8jrw6fxii7n26i8g7nrh1sf"; depends=[]; }; @@ -4664,11 +4766,12 @@ in with self; { cofeatureR = derive2 { name="cofeatureR"; version="1.0.1"; sha256="1nxdi97b37pw5xr6cib8hjgziazmy9lfbjgixn9ayacvdhkjs7ib"; depends=[dplyr ggplot2 lazyeval]; }; coga = derive2 { name="coga"; version="0.2.1"; sha256="0cb9hvrlhm8c9fjmg4s577r46lp6xj9g0amwd5n9j2vs4m2h8dnf"; depends=[Rcpp RcppGSL]; }; coin = derive2 { name="coin"; version="1.2-1"; sha256="1lnxzafsnk2w856hcbx3664drlmyk125v4h3q3gxlv00k8a068b1"; depends=[modeltools multcomp mvtnorm survival]; }; + coinmarketcapr = derive2 { name="coinmarketcapr"; version="0.1"; sha256="006ndsj37rx7fg3laama9y3xc6ivhp6b67w4wf3g161ypphlhkxv"; depends=[ggplot2 jsonlite RCurl]; }; cointReg = derive2 { name="cointReg"; version="0.2.0"; sha256="0n4s809avhlrmrjdqzc2s752m7x96c4432gnjd4qv77r2nns7dw4"; depends=[checkmate MASS matrixStats]; }; cointmonitoR = derive2 { name="cointmonitoR"; version="0.1.0"; sha256="0rsacvib9prgb199m5ndi0zlgfsvf1giqc5s41wp0yvxdxjdq5lw"; depends=[cointReg matrixStats]; }; colf = derive2 { name="colf"; version="0.1.2"; sha256="1xbmc32rp0xlj73krwhqn2ji5xa9kd2anaw88mvi5psdi3d2y1np"; depends=[nlmrt]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; - collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.5"; sha256="0p0570xslfzn1fv9nl389m6z23bihinn0myi8fd6gss6z5w6vkmm"; depends=[data_tree htmlwidgets]; }; + collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.6"; sha256="1l02rk1lmm2ac9rr5p1633y1chc203cr9mhlc9s95bv12791i5zb"; depends=[data_tree htmlwidgets]; }; collpcm = derive2 { name="collpcm"; version="1.0"; sha256="15k6khsgikjpsasyz02bhgd43nij2n7nl0m0sgxvjlcn0nv95y2n"; depends=[latentnet network vegan]; }; coloc = derive2 { name="coloc"; version="2.3-1"; sha256="1j3m9afpkm0bzib38yqvk85b6s6l56s6j2ni96gii4a06r87ig60"; depends=[BMA colorspace MASS]; }; colorRamps = derive2 { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; @@ -4696,14 +4799,14 @@ in with self; { comf = derive2 { name="comf"; version="0.1.7"; sha256="1waxapw870fssmy9mzzpslypbal7vanlajzv9ffnsh5w2yzjdpfi"; depends=[plyr]; }; commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; - commonmark = derive2 { name="commonmark"; version="1.2"; sha256="12q5mncxvkwdxc35is6y5idx8a1h99hyz5x6ri0arni6k25krchk"; depends=[]; }; + commonmark = derive2 { name="commonmark"; version="1.4"; sha256="1vb8r9khpvcf0q7acv8rsplfjjwcll302bg5kp596cvn6aacypl6"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.0.0"; sha256="0yx5yglsdplm3vz268016b1mbwk92hyqwnjircifm81ihivqb3r1"; depends=[]; }; compHclust = derive2 { name="compHclust"; version="1.0-3"; sha256="0agay7rn5mrw07imz4l547b7m9pfcg3rhz4krfxrvg1q2z2kryvj"; depends=[]; }; compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; - compareDF = derive2 { name="compareDF"; version="1.1.0"; sha256="1597xmq857jf4b67k7y869gbflad89rxfvrq8m0gp1wd21wv8z1h"; depends=[dplyr htmlTable tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="3.3"; sha256="1gh4jvckbqa9wxc6z191m4hq98blbgi276ckm62m0v51vgpb2c38"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; + compareDF = derive2 { name="compareDF"; version="1.2.0"; sha256="09y8bh9d9m2pf9j7qqyk1s07pp7rgbhzbkswl12vnx2cm24lp525"; depends=[dplyr htmlTable tidyr]; }; + compareGroups = derive2 { name="compareGroups"; version="3.3.1"; sha256="1sb7acmsdw6zzczksiwh95q6hjf37hqi22njlfdxi233k3ad554y"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparison = derive2 { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; compeir = derive2 { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; }; @@ -4732,7 +4835,7 @@ in with self; { conditions = derive2 { name="conditions"; version="0.1"; sha256="0vhqkbsil3qfvrz7924i3wvjknw69cp27g7ayapf6w94bbggx4x8"; depends=[]; }; condmixt = derive2 { name="condmixt"; version="1.0"; sha256="05q1fj7akf6lsq9rbcqqkzlx82jvk6mlvmwx6jzk8j228fwqmg90"; depends=[evd]; }; condvis = derive2 { name="condvis"; version="0.4-1"; sha256="1fqwybfw5sv4g8kg1yk41ixm5bmzcx7dry1a7ijca5wakchghvya"; depends=[MASS]; }; - coneproj = derive2 { name="coneproj"; version="1.11"; sha256="11hz6xk7b53c1j2c1l0j8c3gh310b59nhr6ln0vibfp30dzxq7xq"; depends=[Rcpp RcppArmadillo]; }; + coneproj = derive2 { name="coneproj"; version="1.12"; sha256="1937sf7b9s2y421gf2srjjdpv2knxrr03xyq5vg5j77z73kh9s6d"; depends=[Rcpp RcppArmadillo]; }; conf_design = derive2 { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; confSAM = derive2 { name="confSAM"; version="0.1"; sha256="00l4hk0n63p3gdv6hpxqkkn3nw4rgw77rpwzn2k8fgq53ja44yfg"; depends=[]; }; confidence = derive2 { name="confidence"; version="1.1-2"; sha256="0m6iz59n5jpi0ig3za3nir4d4bdsysf5g47d2nakfmaz03wk520z"; depends=[ggplot2 knitr markdown plyr xtable]; }; @@ -4769,7 +4872,7 @@ in with self; { cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.2"; sha256="0cvc4nz329pkjkpir3as8vvqyjmcrg9bxp6mqv12vhxyxqsp6hbg"; depends=[]; }; coprimary = derive2 { name="coprimary"; version="1.0"; sha256="0pjln9p5lzv6wl5xrz0kb90hnjlnp7ch2kvh054nxdbmlxv5akc3"; depends=[digest gsDesign plyr proto]; }; - copula = derive2 { name="copula"; version="0.999-17"; sha256="19i4x4adynn63f0z85hk5npr40lcn36d7cb2z46qnqmpplz9rqh3"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; + copula = derive2 { name="copula"; version="0.999-18"; sha256="1xdjnp8zgla2hixyp524nvgbji0jcrmqc4j99hr8xp9365xb6z86"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaedas = derive2 { name="copulaedas"; version="1.4.2"; sha256="09w6b1m1lnlnsx0qp2mzlp0z9rxzz90qs9jqzwwjl56lzdad3vpr"; depends=[copula mvtnorm truncnorm vines]; }; corHMM = derive2 { name="corHMM"; version="1.22"; sha256="03di9250hjn5fiwn47f0pr4zprmsza4if3xpmy3j1czahc8zlqnj"; depends=[ape corpcor expm GenSA nloptr nnet numDeriv phangorn Rmpfr]; }; corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; }; @@ -4777,16 +4880,16 @@ in with self; { corcounts = derive2 { name="corcounts"; version="1.4"; sha256="0irlx62ql5rp5s7nnjdy6jh723wl4039wn10zxri8ihxwqsyyz3f"; depends=[]; }; cord = derive2 { name="cord"; version="0.1.1"; sha256="18xj6cwmx1a7p3vqx5img8qf8s75nc6pcv78v15j081pgn786ma5"; depends=[Rcpp RcppArmadillo]; }; cordillera = derive2 { name="cordillera"; version="0.7-0"; sha256="0lapg9h2lw233h8plavs92c1l51m0sicslsr7gjyr0w3vkg13mxq"; depends=[dbscan yesno]; }; - coreCT = derive2 { name="coreCT"; version="1.1.2"; sha256="1yn57glrbk4wqhb8icjv9hxm5lr3ys85849ddwlb6hnjlfc1cn56"; depends=[igraph oro_dicom plyr raster]; }; + coreCT = derive2 { name="coreCT"; version="1.2.1"; sha256="19aq5snv5kin913rf0a1n9z0cg2l1jn2hnxbd0h05p1qrsysx52b"; depends=[igraph oro_dicom plyr raster]; }; coreNLP = derive2 { name="coreNLP"; version="0.4-2"; sha256="0rvyqj7s3lijq4rzil65060b29m393m7zmg99mykp1g1kby5bjd8"; depends=[rJava XML]; }; coreSim = derive2 { name="coreSim"; version="0.2.4"; sha256="1fhlss420rhs21l9i2ag5g3j0vnrkpqdh13ca4rwfan6h35qr3sm"; depends=[dplyr MASS]; }; coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; }; - corehunter = derive2 { name="corehunter"; version="3.1.0"; sha256="1q5bmzkmm8fzdnbj8s8mi0jxmrqp6ps14m1fm0c3frlqj3fy1ngm"; depends=[naturalsort rJava]; }; + corehunter = derive2 { name="corehunter"; version="3.2.0"; sha256="12bwmhl6mmjz7xggh03933k1ax5k5dri3bp4p73y6bh1rk22p5l2"; depends=[naturalsort rJava]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; corpcor = derive2 { name="corpcor"; version="1.6.9"; sha256="1hi3i9d3841snppq1ks5pd8cliq1b4rm4dpsczmfqvwksg8snkrf"; depends=[]; }; corpora = derive2 { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; }; - corpus = derive2 { name="corpus"; version="0.9.1"; sha256="1bagwiysxk9vsqd3gl4752cid6pnv3nlifry3gb25bqwgxjyhy63"; depends=[Matrix]; }; + corpus = derive2 { name="corpus"; version="0.9.2"; sha256="1kz6k6v2820lxxk6mbpkxzl2n63q1z5xir43srzw5pir93ssqrbv"; depends=[]; }; corr2D = derive2 { name="corr2D"; version="0.2.0"; sha256="02z9k0j6j8jyjfgff55amkzsa5w0xbr9nqm1247qylsh8sl2rqcz"; depends=[colorspace doParallel fields foreach mmand rgl]; }; correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; corregp = derive2 { name="corregp"; version="1.0.3"; sha256="07zsbxhvh7n4ma6lgsmg0kkmgcs5afa02k6cq57afaqvxisw18l3"; depends=[diagram ellipse gplots rgl]; }; @@ -4838,9 +4941,12 @@ in with self; { cplm = derive2 { name="cplm"; version="0.7-5"; sha256="16li79x2zyydi7gi4n8k09g9x2n1dgd9av3nqjnb0by3v31c44n0"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cpm = derive2 { name="cpm"; version="2.2"; sha256="1n1iqhalp99mbh8jha0pv759fb97sqxdiiq9bxy3wm6aqmssvdb1"; depends=[]; }; cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; + cprr = derive2 { name="cprr"; version="0.1.1"; sha256="0bnq3961bqf1y1f37x60qkwmq50vnvcpv4axq0yw5n1mrs20mllj"; depends=[]; }; cpt = derive2 { name="cpt"; version="0.9"; sha256="03nvxkwwvqmzpphax4zfij6jvh26x4bsl3mn2xr4mbr7cjb2x12w"; depends=[MASS nnet randomForest]; }; + cptec = derive2 { name="cptec"; version="0.1.0"; sha256="1sh6vs9qfxxlhlg6y2qchikjg8sh64zg3j8x5b9dpba9lhbhzzqj"; depends=[magrittr rvest xml2]; }; cqrReg = derive2 { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; cquad = derive2 { name="cquad"; version="1.4"; sha256="1sxf30rikzr4mj1nyr12ys7gcnx5vq0rpd9djc2lkfbqlvi4mmai"; depends=[MASS plm]; }; + cr17 = derive2 { name="cr17"; version="0.1.0"; sha256="1zyq77gxycbwyqhv5w0zw4n7v3ipjs6rcbja43g0k5q8h0gjnnn1"; depends=[cmprsk dplyr ggplot2 gridExtra gtable scales survival]; }; crackR = derive2 { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[evd Hmisc]; }; cramer = derive2 { name="cramer"; version="0.9-1"; sha256="1dlapmqizff911v3jv8064ddg8viw28nq05hs77y5p4pi36gpyw4"; depends=[boot]; }; crandatapkgs = derive2 { name="crandatapkgs"; version="0.1.8"; sha256="12sz54csqnwk49iwg5zcigyczxhgskxsak6ws2ih7nqpv19v8a0m"; depends=[]; }; @@ -4849,7 +4955,7 @@ in with self; { cranlogs = derive2 { name="cranlogs"; version="2.1.0"; sha256="1w1nbifjb9l106fk97zy0w73x73bw5azq89l3c1b8r2fz8aljkkc"; depends=[httr jsonlite]; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; crawl = derive2 { name="crawl"; version="2.1.1"; sha256="0dr9z8y8rvc3wn1gjb6mh5wmszng9j1r2a9ks6p5am8ghf754sps"; depends=[dplyr gdistance mvtnorm raster Rcpp RcppArmadillo shiny sp]; }; - crayon = derive2 { name="crayon"; version="1.3.2"; sha256="0s2yam18slph7xsw4pyc9f92gdyf609r5w92yax69zh57kb7asws"; depends=[]; }; + crayon = derive2 { name="crayon"; version="1.3.4"; sha256="0s7s6vc3ww8pzanpjisym4jjvwcc5pi2qg8srx7jqlz9j3wrnvpw"; depends=[]; }; crblocks = derive2 { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-0"; sha256="1wd9hwr68qlinaw23lckjizq5g67v74wc3v6ig1rxrxyssyzag68"; depends=[Formula ordinal]; }; creditr = derive2 { name="creditr"; version="0.6.1"; sha256="1dhjl99gjc97bdsdg29mq6xifivjn9kr0y7m2jzvrzb26x856z97"; depends=[devtools quantmod Rcpp RCurl XML xts zoo]; }; @@ -4888,6 +4994,7 @@ in with self; { cruts = derive2 { name="cruts"; version="0.3"; sha256="0yn6xc2wg23nkjnsb7kii7dn897wf4ymnpmgppacrsznl8mmlmgd"; depends=[lubridate ncdf4 raster sp stringr]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; + csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; }; csampling = derive2 { name="csampling"; version="1.2-2"; sha256="0gj85cgc3lgv7isqbkng4wgzg8gqcic89768q2p23k4jhhn6xm2w"; depends=[marg statmod survival]; }; cshapes = derive2 { name="cshapes"; version="0.6"; sha256="0mp6grkibmqk4k1yi4w2sglpp9ari5cfw4iip49a0z58qa98npw7"; depends=[maptools plyr sp]; }; csn = derive2 { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; @@ -4903,7 +5010,7 @@ in with self; { ctl = derive2 { name="ctl"; version="1.0.0-0"; sha256="12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.1"; sha256="05r04bxd1n866rcizjgw1267ms8zdcpny3i1vycrk31ja953fs0a"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.8"; sha256="16qi4y3ivcys2dfixm4vzyqbqbm2j1gc1l4bjrrp46c268qja2z3"; depends=[fda gdistance Matrix raster sp]; }; - ctmm = derive2 { name="ctmm"; version="0.3.6"; sha256="0yi277hfnb5wygs4brxsha84j5jj7khplh5164xkpla1wy5f89q2"; depends=[bit64 data_table expm fasttime manipulate MASS Matrix numDeriv pbivnorm raster rgdal scales]; }; + ctmm = derive2 { name="ctmm"; version="0.4.1"; sha256="1ggq86j643k2xrl1lbkp9is5759fw63vq544z69bfxm889925bm0"; depends=[data_table expm fasttime manipulate MASS Matrix numDeriv pbivnorm raster rgdal scales]; }; ctqr = derive2 { name="ctqr"; version="1.0"; sha256="1q4icv8qicgwr664cbrmkh2x9xmlrc80yvz8gnaqh86248kn4yp3"; depends=[pch survival]; }; cts = derive2 { name="cts"; version="1.0-21"; sha256="0wagxqb8msjc8z33qp7sc92l53f56d9bzz9160bmgpjxlj6cnqcj"; depends=[]; }; ctsem = derive2 { name="ctsem"; version="2.4.0"; sha256="1rlbk7qwn3lbzzlfwdznfywp5nhwswgl6yj220sfxzjqwlcip9qw"; depends=[Matrix OpenMx plyr Rcpp rstan]; }; @@ -4921,6 +5028,7 @@ in with self; { curry = derive2 { name="curry"; version="0.1.1"; sha256="1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29"; depends=[]; }; curstatCI = derive2 { name="curstatCI"; version="0.1.0"; sha256="00prppvrfk8d234rrazhbjq1ms1ww53pc8zvgywpjf7jiknas2ym"; depends=[Rcpp]; }; curvHDR = derive2 { name="curvHDR"; version="1.2-0"; sha256="185097ikqhmqqc4ha7l74inx5cmg1bhgw3cw40wk0ngc4wv4sfqi"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; + curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; curvetest = derive2 { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_methodsS3 R_oo]; }; cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.1"; sha256="0rlfsnhmmcwx7iyjavj03v4kdfzxcqjggi8qpgmi6lkli3n0s6pg"; depends=[FNN glmnet]; }; @@ -4933,7 +5041,7 @@ in with self; { cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvxbiclustr = derive2 { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; }; cvxclustr = derive2 { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[igraph Matrix]; }; - cwhmisc = derive2 { name="cwhmisc"; version="6.0"; sha256="13lgpxl957lbf333m1a17ad8iy3kjfrzav0sxx7w3vnsj98aqa43"; depends=[lattice]; }; + cwhmisc = derive2 { name="cwhmisc"; version="6.5"; sha256="1nakiyamg05r7xysac5b1y0ddq6s25v6ygsrb487b5jcv0d95g2n"; depends=[lattice]; }; cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; @@ -4944,18 +5052,20 @@ in with self; { cystiSim = derive2 { name="cystiSim"; version="0.1.0"; sha256="0pz8jxi4lgcwzrb4dh8xn63xhpaga5rzg5hwqicwv8isc16iqizd"; depends=[ggplot2 knitr magrittr]; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; cytometree = derive2 { name="cytometree"; version="1.0.1"; sha256="14i6x13kh8kx9vavs4vhv5zxbqwg4r5cxkd1jd801v640p7z9qmm"; depends=[ggplot2 igraph mclust Rcpp RcppArmadillo]; }; + cytominer = derive2 { name="cytominer"; version="0.1.0"; sha256="1p988aw689kgpbglmzrnl30krnbynwk3dgjv7w3x2719hi481z2j"; depends=[caret doParallel dplyr foreach futile_logger magrittr purrr rlang tibble tidyr]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3Tree = derive2 { name="d3Tree"; version="0.2.0"; sha256="0xjr36hdd00dy8s8z1a1s44dn2wg0nm6yqc1rri2l0dqrbh4nrbn"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.1"; sha256="0xx1lpp9qpkqh991ib0l9z1wn6j67jnggrhq5gr5sm63m7sjijwn"; depends=[base64enc dendextend htmlwidgets png scales]; }; + d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; d3r = derive2 { name="d3r"; version="0.6.9"; sha256="1gh4s0rrzwzzaqjd3gr0dgw6dz9dwijp9lb2hfjbmk5jlj55akhj"; depends=[dplyr htmltools tidyr]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; }; dHSIC = derive2 { name="dHSIC"; version="2.0"; sha256="1acbzln2rlyranccsjndpw6pj4a2lyb24jb52r2wms8lsg4fn2m9"; depends=[Rcpp]; }; - dLagM = derive2 { name="dLagM"; version="0.0.7"; sha256="0p0hdrg4p7aril9hyv184d7v42mqz4pyqvwxcgwpjzpd2cbc9f8k"; depends=[AER dynlm Hmisc wavethresh]; }; - dMod = derive2 { name="dMod"; version="0.3.2"; sha256="1m0rpq78h2vhgl07jsk94hf03zj42wjc08hi6q5lqj77czwpaxfg"; depends=[cOde ggplot2 stringr trust]; }; + dLagM = derive2 { name="dLagM"; version="0.1.0"; sha256="02923n5m5fpjr0vcbszbhxpr1xrywbb6bvqlih9yg5vngkryram5"; depends=[AER dynlm Hmisc wavethresh]; }; + dMod = derive2 { name="dMod"; version="0.4"; sha256="12q80pk0j5081qz4rb19iib0n4h1yf1c42iq1z14yyrmki3266pm"; depends=[cOde deSolve ggplot2 plyr rootSolve stringr]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; - dad = derive2 { name="dad"; version="3.0.0"; sha256="17ric9kj8zni4yv77k118jaczik85liksa6dfvkvpnc8ig60cajp"; depends=[e1071 lattice]; }; + dad = derive2 { name="dad"; version="3.0.1"; sha256="0h8nj8nsmhyv1xww3x0z2fgnh1cd1jyszd91i79wba465vbsi4mh"; depends=[e1071 lattice]; }; dae = derive2 { name="dae"; version="3.0-04"; sha256="1fykmdgg29smdm8qn2cfspjh8lspa57h4s0jsdfz8gh5zfmvsn1h"; depends=[ggplot2]; }; daewr = derive2 { name="daewr"; version="1.1-7"; sha256="01n9g3adjk66wx9lm9gl6wa3y9ba5w0w0p5ayj8rx5ywxnm8fnvi"; depends=[BsMD FrF2 lattice]; }; daff = derive2 { name="daff"; version="0.3.0"; sha256="1kl5pjwxds6bz58zd5xaa1hknd6f9i0512895fhljqi7kvsrldra"; depends=[jsonlite V8]; }; @@ -4966,13 +5076,13 @@ in with self; { dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dams = derive2 { name="dams"; version="0.2"; sha256="0hf5s8i61r5q4h3s8dfmdl3vkj7v15ha59pjvpjqx3yihsgziqz9"; depends=[RCurl]; }; darch = derive2 { name="darch"; version="0.12.0"; sha256="17nvxqxbbdv4qdallld5f2c6nhhszsz7ja04rhz5g3844s87bv2f"; depends=[caret futile_logger ggplot2 Rcpp reshape2]; }; - darksky = derive2 { name="darksky"; version="1.0.0"; sha256="03vdzxz5wxwsjz08rg18zsmrg4n7dpgrrm70zrqa5pmyq1swhh2n"; depends=[dplyr ggplot2 gridExtra gtable httr]; }; + darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; dartR = derive2 { name="dartR"; version="0.93"; sha256="1mkap7dvbd6j4d2zqp9kdld06ds78fi4w01w7zqmnvz3xzigp3li"; depends=[adegenet ape data_table DBI Demerelate directlabels dismo doParallel foreach ggplot2 MASS misc3d pca3d pegas plotly plyr quadprog qvalue reshape2 rgl seqinr SNPassoc SNPRelate StAMPP stringr tidyr vegan]; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; }; dat = derive2 { name="dat"; version="0.3.0"; sha256="1mzkxjyph4xka32c6bl0krr7723sch15x9wh8v9rcawn0gwnknmj"; depends=[aoos data_table dplyr Formula magrittr progress tibble]; }; data_table = derive2 { name="data.table"; version="1.10.4"; sha256="0ykbjr1x50ajxbri385vi3mnxj7zg1dcgh9y0snp341qmmmdypw6"; depends=[]; }; - data_tree = derive2 { name="data.tree"; version="0.7.0"; sha256="0rgpapxsqnbzjcifnz3p41b6j8h9x2yfixr5ryd03v8vzgikyf9b"; depends=[DiagrammeR R6 stringr]; }; + data_tree = derive2 { name="data.tree"; version="0.7.3"; sha256="1r442a1mbmrv7x88769kbz4p32cy8hacliahbls2qsr2ikbk1w2p"; depends=[DiagrammeR R6 stringr]; }; data_world = derive2 { name="data.world"; version="1.1.1"; sha256="0kmlls8wicyfjxl27pajkagi4ps1s85rd7ywwfjfrkzkangy05xz"; depends=[dwapi httr ini]; }; dataCompareR = derive2 { name="dataCompareR"; version="0.1.0"; sha256="06chgmgrb5n2iiynwxxgf6aq0y5ldsy43s7pwnl64w0vsa7nj8wc"; depends=[dplyr knitr markdown stringi]; }; dataMaid = derive2 { name="dataMaid"; version="0.9.2"; sha256="13wim5375vlhaba2gawjb7lykzfj4py89cdhip44xaq19agg5675"; depends=[ggplot2 gridExtra haven pander rmarkdown robustbase]; }; @@ -4990,9 +5100,9 @@ in with self; { datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.3.0"; sha256="17588r2b528ylchdh8aa1k7q7w7wc3f2mxixif8j6snzpwsvwpzc"; depends=[assertthat httr lubridate readr tibble]; }; dataone = derive2 { name="dataone"; version="2.1.0"; sha256="0vpa4gb30dvxax4sxbnbn8gblnzdfcf2k0v5js3gqwjb95ah4w4y"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; - datapack = derive2 { name="datapack"; version="1.3.0"; sha256="0ax7mxqv1p9snfjzli5zw5pjzsl3nlss14kiih1hljvyzdya0s1f"; depends=[digest hash redland uuid XML]; }; + datapack = derive2 { name="datapack"; version="1.3.1"; sha256="0hzc68vgjvpm235zg8k2642c3jzh3ls9kp6lpz720y1b56q8k3n7"; depends=[digest hash redland uuid XML]; }; datapasta = derive2 { name="datapasta"; version="2.0.0"; sha256="100nqw315xdzxpzn1gmx4881zli4lwzwckdvqjciysv4l5gvzzfm"; depends=[clipr readr rstudioapi]; }; - datarobot = derive2 { name="datarobot"; version="2.6.0"; sha256="1dnps3hdyz468i7jx2idary2dbphyy6j178n8ba37dvjf5pnhnbw"; depends=[httr jsonlite yaml]; }; + datarobot = derive2 { name="datarobot"; version="2.7.1"; sha256="13aabv0h1ssfd3llbqgapcfgd0x87h99bdzhhfhmkr84mzd6pzpv"; depends=[curl httr jsonlite yaml]; }; datasauRus = derive2 { name="datasauRus"; version="0.1.2"; sha256="1ixfc1v0iv5jb4920957xhpq9kchdy482vdsm51wj1961ldrkhvh"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; datasets_load = derive2 { name="datasets.load"; version="0.1.0"; sha256="029rxg0h17nszkxgq5kjd0njymb8pgdsabmz5slshzd2ijjh82jz"; depends=[DT miniUI shiny]; }; @@ -5004,6 +5114,7 @@ in with self; { dataview = derive2 { name="dataview"; version="2.1.1"; sha256="1nn33h5c1h4a3zm1xm7sdz4s6sy0f3r53jhm7bv6qk7aiylwqf6v"; depends=[data_table xtermStyle]; }; date = derive2 { name="date"; version="1.2-37"; sha256="0321kqvpy5cvl8hmm6pd0pyjpi30glm8hvw60mrql6y28sn6pqhl"; depends=[]; }; datetime = derive2 { name="datetime"; version="0.1.2"; sha256="0qbd1makidkbpr26wkxchnb8rpwzm4l42j4vipwwmfwv3gpslmjx"; depends=[]; }; + datetimeutils = derive2 { name="datetimeutils"; version="0.2-7"; sha256="1ql44k6s0pskc7kg28aly9k7ncl58gzs80d9gpwyjdhrgimimcxk"; depends=[]; }; dave = derive2 { name="dave"; version="1.5"; sha256="0sw9hc4y9wdfbnnk6isg7z7sky6ni68pkjxdlrph5m7jcyqphz96"; depends=[labdsv vegan]; }; dawai = derive2 { name="dawai"; version="1.2.1"; sha256="0i0vgd4kia2hgx88rjdyi0y8hikzii4mwgal46c9iiqb6gmf8vrj"; depends=[boot ibdreg mvtnorm]; }; dbConnect = derive2 { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[gWidgets RMySQL]; }; @@ -5059,6 +5170,7 @@ in with self; { deldir = derive2 { name="deldir"; version="0.1-14"; sha256="12cjr4r50rdrh2l0105cvd42rqwzsmmiqcax3sbqk1ggh2lnblw9"; depends=[]; }; delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.5"; sha256="0hbaibl4b50pg9ypyhz4700w6kir4jiyyl0230a8hjmb92aqn303"; depends=[MASS]; }; + deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; demi = derive2 { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; }; deming = derive2 { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; }; demoKde = derive2 { name="demoKde"; version="0.9-4"; sha256="0p4v808m42wbv8ibdfqzm43cbbg0yl452wnm1mzqq2n37z6yljkr"; depends=[]; }; @@ -5089,7 +5201,7 @@ in with self; { descomponer = derive2 { name="descomponer"; version="1.4"; sha256="12zpkixclm6jmrgzvcy48c1mdqh9dgadzf9026wjyamphxkkjbip"; depends=[taRifx]; }; descr = derive2 { name="descr"; version="1.1.3"; sha256="0fp91gbxxxvn2hqdyddhb3x85031wgq7gnqrhzjr956prlv086r6"; depends=[xtable]; }; describer = derive2 { name="describer"; version="0.2.0"; sha256="1pjyihmn4gkaamixsc3qwynsc02pwv9bgn6s7z7acmmsybhhs6xn"; depends=[]; }; - descriptr = derive2 { name="descriptr"; version="0.1.1"; sha256="19ppyd9hhhg8s90vd2ldcf2wrr5haanqiycwfcmyrvaddc72i3mv"; depends=[dplyr magrittr]; }; + descriptr = derive2 { name="descriptr"; version="0.2.0"; sha256="1295pgw69v2r60pqff01mcrj619lg769y6x8dilwffl767w0d95n"; depends=[dplyr forcats magrittr tibble]; }; desctable = derive2 { name="desctable"; version="0.1.0"; sha256="002x4zjrcjz0xxh924z00rka1c61ldrj6lypakkf3p4hbwid6j30"; depends=[dplyr DT htmltools pander purrr]; }; deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; desiR = derive2 { name="desiR"; version="1.2.1"; sha256="0ghcv96bbwn74mka4dpf2lkpnlikjn3q6lx2sl8bbw77nriap0n6"; depends=[]; }; @@ -5127,7 +5239,7 @@ in with self; { dgof = derive2 { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; }; dhga = derive2 { name="dhga"; version="0.1"; sha256="1n48irj53g3kn451ak5ly50wxdn7qmzi2kib8clsvcx2n7mvpgcm"; depends=[VennDiagram]; }; dhglm = derive2 { name="dhglm"; version="1.7"; sha256="09wasgvjw0xc9k68m6a8lx372p2hywk4j6ikr9wjjjfl6f17j1cw"; depends=[boot MASS Matrix numDeriv]; }; - di = derive2 { name="di"; version="1.0.0"; sha256="0lccp4xzmnj24zvwya6vw2d429b9q5rp6vfby0k3rqljgzyy6rgk"; depends=[scales]; }; + di = derive2 { name="di"; version="1.1.1"; sha256="1rq0cq59p5fgf0sb1n8dm5z5a8b0qnwp5qa6jmgsa8kjwn04hw8z"; depends=[scales]; }; diagis = derive2 { name="diagis"; version="0.1.3"; sha256="0ni7xqpnzr5drdw12sslm7d7amwzaifhlr2pw6b4f264wcab72i8"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; diagonals = derive2 { name="diagonals"; version="0.4.0"; sha256="03n6lm0hkgylswgj1qlgrjigm7basl5frip99mxx19mvaqa3bhqy"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.4"; sha256="0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw"; depends=[shape]; }; @@ -5140,7 +5252,7 @@ in with self; { didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; - difNLR = derive2 { name="difNLR"; version="1.1.0"; sha256="00cnd155qdv60kvlw9y32316p3gk52xaqxjw4815af2glgdl9lr6"; depends=[CTT ggplot2 msm nnet reshape2]; }; + difNLR = derive2 { name="difNLR"; version="1.1.1"; sha256="14sgya6s8i6r6861dcwwiv8scwvxgk780yka1vlzsqg9bsklcyi9"; depends=[CTT ggplot2 msm nnet reshape2]; }; difR = derive2 { name="difR"; version="4.7"; sha256="17i8l4z7dw8nfr4b5pc72l1qm7byjcflh58kasafx9kxyvfgz258"; depends=[lme4 ltm]; }; difconet = derive2 { name="difconet"; version="1.0-4"; sha256="0cjadi4mnpfmy18vyp0dw55mnhs0zddf51w59gvq6gszk145z3bq"; depends=[data_table gplots mvtnorm stringr]; }; diffEq = derive2 { name="diffEq"; version="1.0-1"; sha256="1xmb19hs0x913g45szmm26xx5xp85v182wqf0lnl4raxaf47yhkm"; depends=[bvpSolve deSolve deTestSet ReacTran rootSolve shape]; }; @@ -5176,7 +5288,7 @@ in with self; { discord = derive2 { name="discord"; version="0.1"; sha256="0nrjpl7l9lzkn92fwzaj3vh8zv2b6706gnh5c4zalkld0xac3c23"; depends=[dplyr]; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; - discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.4"; sha256="0y85fpqb2jdwv28dpxp39q7w4kfw8x48dk1a426a9z14kj807zbi"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; + discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.5"; sha256="1q4g455jjg293yxdwdppw04ah15idk5j233x2kbqv0jni4v0l2bf"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; discrimARTs = derive2 { name="discrimARTs"; version="0.2"; sha256="088v4awic4bhzqcr7nvk2nldf8cm1jqshg2pzjd2l2p1cgwmlxib"; depends=[RUnit]; }; diseasemapping = derive2 { name="diseasemapping"; version="1.4.2"; sha256="065ndvpx3q9ycxfjl1f2iy3s23d7qf27s1qz31ppx0n929jynn6n"; depends=[sp]; }; @@ -5205,6 +5317,7 @@ in with self; { distrTEst = derive2 { name="distrTEst"; version="2.6"; sha256="1c0xwpyr5gs89psiflcz5dplsb1g9r651jiqg8nxcqa05r9kyhkr"; depends=[distrSim setRNG startupmsg]; }; distrTeach = derive2 { name="distrTeach"; version="2.6.1"; sha256="0x60xlij1m9q7xhi9vnf61vb2px9aah8iqaki6d87c1pxylmqnvr"; depends=[distr distrEx startupmsg]; }; distrom = derive2 { name="distrom"; version="0.3-3"; sha256="1kpbrsa7ml72zvmdcpbbz2rsv4lpqd5i2w3v488ji6nbi44v1gp6"; depends=[gamlr Matrix]; }; + distrr = derive2 { name="distrr"; version="0.0.4"; sha256="0nywvgcbk2i2n2qa80yk68zikl2fs7nybhq540808rjksldh9pvy"; depends=[dplyr lazyeval magrittr tidyr]; }; divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; diveMove = derive2 { name="diveMove"; version="1.4.3"; sha256="18420gm1cb0pinp05n08cj5qgf9rmn5ksr7bfq464s61isrhmzhy"; depends=[caTools geosphere KernSmooth quantreg uniReg]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; @@ -5225,12 +5338,13 @@ in with self; { dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; dmm = derive2 { name="dmm"; version="1.7-1"; sha256="0ihzbv2vlymyr1l0xi0jmx0xgpbj46azd7gwr3m9qsgnjp7wc1p8"; depends=[MASS Matrix nadiv pls robustbase]; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; }; - dmutate = derive2 { name="dmutate"; version="0.1.1"; sha256="14lv16lqvlccf84s1g1qrz88y732qzb9545skg6fjrldcr8b0hl4"; depends=[dplyr]; }; + dmutate = derive2 { name="dmutate"; version="0.1.2"; sha256="06gr49j5jz6ns1zydwsqysgkigi2sbm4hdd2jbb82f05rd9spyf3"; depends=[dplyr MASS]; }; dna = derive2 { name="dna"; version="1.1-1"; sha256="0gw70h1j67h401hdvd38d6jz71x1a6xlz6ziba6961zy6m3k5xbm"; depends=[]; }; dnc = derive2 { name="dnc"; version="1.2"; sha256="0a0nc1yx6vhbjsik9pidda97i7s6ndlsm8pzx29ccmxlmqncc18b"; depends=[BayesLogit igraph MCMCpack movMF plot3D plot3Drgl Rcpp RcppArmadillo skmeans vegan]; }; dnet = derive2 { name="dnet"; version="1.1.1"; sha256="1pj31586li19dybfvwljmpv18k6k2mvrx6g0a8rjjdcqczasf8yr"; depends=[graph igraph Matrix Rgraphviz supraHex]; }; + dng = derive2 { name="dng"; version="0.1.0"; sha256="03c47kviy1bw8sfb9705cr8bqi4d47mfnrkql1c079gqyhxbkv2z"; depends=[Rcpp]; }; doBy = derive2 { name="doBy"; version="4.5-15"; sha256="0n1ml47f78nqhy92a0fgsb4brz0qyfr4q3c7im8pnb0ngia4ssdx"; depends=[MASS Matrix]; }; - doFuture = derive2 { name="doFuture"; version="0.5.0"; sha256="1yb483x99z7xjrxb2r4v2l0d66y15pc799dxqn62kppmr0j452bz"; depends=[foreach future iterators]; }; + doFuture = derive2 { name="doFuture"; version="0.5.1"; sha256="0jhsvs6k7m5n5v37ybwnank38lvdiiwazzsy9hp04y9mgh2p3ysz"; depends=[foreach future iterators]; }; doMC = derive2 { name="doMC"; version="1.3.4"; sha256="0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.10"; sha256="1mddx25l25pw9d0csnx2q203dbg5hbrhkr1f08kw0p02a1lln0kh"; depends=[foreach iterators]; }; @@ -5247,28 +5361,30 @@ in with self; { docxtools = derive2 { name="docxtools"; version="0.1.1"; sha256="1mlgl9105mifzdgf57spgr2rr5740ghr5afmlskxn6ind7jfka70"; depends=[dplyr ggplot2 pander stringr tidyr]; }; docxtractr = derive2 { name="docxtractr"; version="0.2.0"; sha256="197j57ab8x960b1yfq6xp8fwmq51xs04nf0cb16r161h4bcmgs2j"; depends=[dplyr purrr tibble xml2]; }; domino = derive2 { name="domino"; version="0.3.0"; sha256="0lhrnrpyz98cl16a1xk7x0299kxkz303myyz61nw3x6f7kh1gvd6"; depends=[]; }; - dosresmeta = derive2 { name="dosresmeta"; version="2.0.0"; sha256="1k6m9zl0xzwg7x7s63c4agi7qfdk67f3hjbsikfhsgrb0rbbkpf7"; depends=[mvmeta]; }; + dosresmeta = derive2 { name="dosresmeta"; version="2.0.1"; sha256="0qdalzdk7q4wx3vl5f3i64m8cb7vhi4pqzghar32j0a7l6gla04z"; depends=[mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; dotCall64 = derive2 { name="dotCall64"; version="0.9-04"; sha256="0qp6magpp0jaa0b9sfkbxd91afayl24kj0yrh0ix1v3ahdnaar8f"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; }; dotwhisker = derive2 { name="dotwhisker"; version="0.3.0"; sha256="1sbj8blnqnsyvf7pq2cc9q7nqb66n0v2gi2rr09yjlppf7v1pcjf"; depends=[broom dplyr ggplot2 ggstance gridExtra gtable plyr stringr]; }; + doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; - downscale = derive2 { name="downscale"; version="2.0-2"; sha256="0ladwn27x019rhz5dil06d17gj15fhcwlmrrci150z9wzbq6ip4q"; depends=[cubature minpack_lm raster Rmpfr sp]; }; + downscale = derive2 { name="downscale"; version="2.0-3"; sha256="0jvzvmwhpdr7ygcxky4yl1ldb843hrmnzhmnvl0694mmswwqsf8l"; depends=[cubature minpack_lm raster Rmpfr sp]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; }; - dparser = derive2 { name="dparser"; version="0.1.3"; sha256="0cy8k7rqz06s01hr80vppb7mkf5bmh2lpdrzn4fzzmbzciflbh32"; depends=[digest]; }; + dparser = derive2 { name="dparser"; version="0.1.5"; sha256="0h2q7bdx51bzd2zs72gsi4957zlshvb6kf848nl70665pvz04m2v"; depends=[digest]; }; dpcR = derive2 { name="dpcR"; version="0.4"; sha256="02j7fhhfq7p2wfcnr7rdy65v6dcvdym3nfyps7717p7b429chchc"; depends=[binom chipPCR dgof e1071 evd multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; }; dpglasso = derive2 { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; dplR = derive2 { name="dplR"; version="1.6.6"; sha256="04b0j9l2gkkycjjn16zbhv0kczhrij0bsnrdyh9qd6z53pvd3ryc"; depends=[digest lattice Matrix matrixStats plyr png R_utils stringi stringr XML]; }; dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; - dplyr = derive2 { name="dplyr"; version="0.7.2"; sha256="0jpb32ca1c0mr660igna4yw4fmzydzfhxshd0g8wgmggkynx2qi2"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble]; }; + dplyr = derive2 { name="dplyr"; version="0.7.3"; sha256="0wz5vrcsxzmxpxvs1raz9kyfc7mq3591nadq4rb4hx4sc97ysrxf"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble]; }; + dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpmixsim = derive2 { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[cluster oro_nifti]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; dprep = derive2 { name="dprep"; version="3.0.2"; sha256="0iw1pqpqlv436wpwh1w832aqvy91zvxmbk2jdw7aczrb29wys2bj"; depends=[class e1071 FNN MASS nnet rgl rpart StatMatch]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; }; - drake = derive2 { name="drake"; version="4.0.0"; sha256="1f03n13cfp5hi7rl1ika4fhrw98fh218kzxgyn3v0d1kjdkap7z5"; depends=[base64url codetools crayon digest eply igraph magrittr plyr R_utils storr stringi stringr testthat visNetwork]; }; - drat = derive2 { name="drat"; version="0.1.2"; sha256="14nmbxy2y51bi258fmx24pkwmga791hnwzbx6jy2sl55g3vrxjpz"; depends=[]; }; + drake = derive2 { name="drake"; version="4.1.0"; sha256="0jzr35d49fm9cd0d07sk98y5kfybypynzyywanpl6jad0y5plh2h"; depends=[base64url codetools crayon digest eply igraph lubridate magrittr plyr R_utils storr stringi stringr testthat visNetwork withr]; }; + drat = derive2 { name="drat"; version="0.1.3"; sha256="14q2ahy51b8mlp7fb0nbwzy5hcnlg1z73wgi85sxx4pyq1ycp4zn"; depends=[]; }; drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; drfit = derive2 { name="drfit"; version="0.7.1"; sha256="1k2chmhdwd78a5d1pxi3iskzfb4h1fxp51ji72qs73m3i6s2mqpz"; depends=[drc MASS qcc reshape2 RODBC]; }; @@ -5281,7 +5397,7 @@ in with self; { ds = derive2 { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; }; dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; dse = derive2 { name="dse"; version="2015.12-1"; sha256="1976h57zallhzq43nshg77bsykcvkfwnasha1w59c44fjpl1gs9w"; depends=[setRNG tfplot tframe]; }; - dslabs = derive2 { name="dslabs"; version="0.1.0"; sha256="1ggskr5kqmjl5fa5skzjnc8zwcji79yzixlg05c1rvsiap6b0lwl"; depends=[ggplot2]; }; + dslabs = derive2 { name="dslabs"; version="0.2.0"; sha256="13aw1v1znkvnajgrll120x9vam4vsxy4ihg1066f5f2kiyx8ycgs"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.1.5"; sha256="0qwz9rlgpgx0k28hca2m40ab0qad9rfp1gxswygchv7rcnl4f6ml"; depends=[ggplot2 Rcpp scales]; }; dsm = derive2 { name="dsm"; version="2.2.15"; sha256="1b7ixbfq2xpgbc5hyhyzcr6nx4larl3qg1idccraiwrj3m2dr59h"; depends=[ggplot2 mgcv mrds nlme numDeriv statmod]; }; dsmodels = derive2 { name="dsmodels"; version="1.1.0"; sha256="0gidxi4ph49mjm2hdf9flphfb9916al4cpdkiig504n7ms2sbpbg"; depends=[latex2exp pryr shape]; }; @@ -5295,7 +5411,7 @@ in with self; { dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dtw = derive2 { name="dtw"; version="1.18-1"; sha256="1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr"; depends=[proxy]; }; dtwSat = derive2 { name="dtwSat"; version="0.2.3"; sha256="10b0hs9kn5ljfv28iz62h966zb1pxsfrr6fx45d4427gr6fg8ncz"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales sp xtable zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="4.0.3"; sha256="1pg9yl1z7a3b17cpaxigry90jnf01jckarnd6gimjf02zyrjqblw"; depends=[BH bigmemory clue dtw flexclust foreach ggplot2 Matrix plyr proxy Rcpp RcppArmadillo reshape2 rngtools RSpectra]; }; + dtwclust = derive2 { name="dtwclust"; version="4.1.1"; sha256="1awpqch4jdm70x6hjhzp3g98yikg12sv82zfyd2jwjh4nssiawh1"; depends=[BH bigmemory clue dtw flexclust foreach ggplot2 Matrix plyr proxy Rcpp RcppArmadillo reshape2 rngtools RSpectra]; }; dualScale = derive2 { name="dualScale"; version="0.9.1"; sha256="11hqxprai0s5id6wk4n2q174r1sqx9fzw3fscvqd2cgw8cjn1iwl"; depends=[ff lattice Matrix matrixcalc vcd]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; @@ -5314,7 +5430,7 @@ in with self; { dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; - dynamichazard = derive2 { name="dynamichazard"; version="0.3.5"; sha256="1p11krli4chramgcglf1rw30kk7gqjgp34vlqvfl1ppp3m80rriy"; depends=[boot data_table Rcpp RcppArmadillo stringr survival]; }; + dynamichazard = derive2 { name="dynamichazard"; version="0.4.0"; sha256="0cq79kn45rpfzvnsdxa4sglv1qdr5imy5pkjqgznc99n8sfa8alj"; depends=[boot data_table Rcpp RcppArmadillo stringr survival]; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.1"; sha256="100g131jmgb3by9j3v2n7f7jh9623vd7xf5frjkwrxvwzf0q1i3k"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; }; dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; }; @@ -5332,7 +5448,7 @@ in with self; { eLNNpaired = derive2 { name="eLNNpaired"; version="0.2.3"; sha256="08nck2p5npyw264kgcqmgx5rx7c3h9v892f90xlcd1dnb7dqlan3"; depends=[Biobase globaltest GSEAlm iCheck samr]; }; eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; eRm = derive2 { name="eRm"; version="0.15-7"; sha256="0x8cqcwgn8znd9w9vkxcacf097rziyb511wzcfmhhadidiilk0x3"; depends=[lattice MASS Matrix]; }; - eVenn = derive2 { name="eVenn"; version="2.3.6"; sha256="0g4ji7dli5d21xnyfzw3qda9mgm25ax2jlvfzfbn4h1ra83mcw0m"; depends=[]; }; + eVenn = derive2 { name="eVenn"; version="2.4"; sha256="1qs5qsrc89kb6w6xqc8jdxkih6h48zprvavffdqhxq4ab4i1nvbf"; depends=[]; }; eaf = derive2 { name="eaf"; version="1.07"; sha256="0310lrqfm1l0lifak7wa6xn21bzzn27kbrrx0bidj4hibwv7sa4l"; depends=[modeltools]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; earth = derive2 { name="earth"; version="4.5.1"; sha256="1fkjrdlq0a8w9dvvp0akxpyg0sxrcd08qzflpxjbwd73pm1l31m5"; depends=[plotmo TeachingDemos]; }; @@ -5356,7 +5472,8 @@ in with self; { eba = derive2 { name="eba"; version="1.7-2"; sha256="00hlmnknif9yr4wzw0n1fzkrgbciv7ljc0gkfq34v3vvy3dmdsvq"; depends=[nlme]; }; ebal = derive2 { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.5"; sha256="0kal4sqx12y04696ilwnwkmss4rn16dkbnalgqimz6i4jhz8n23h"; depends=[igraph]; }; - ebimetagenomics = derive2 { name="ebimetagenomics"; version="0.2"; sha256="1jbb1h2wp3fpmjivy09165qn72ign2pbss4bw9xcn2dlxaddgh1c"; depends=[sads]; }; + ebimetagenomics = derive2 { name="ebimetagenomics"; version="0.3"; sha256="1nvdpgq88yf7a89qy896wc1h7afjwj90jdbpm144fn12b2pba0a7"; depends=[breakaway sads vegan]; }; + ebmc = derive2 { name="ebmc"; version="1.0.0"; sha256="0v9hkzy8ljddmi6wdjd1jga4ib566ikr1vgrvxba67ka524r6bbp"; depends=[C50 DMwR e1071 pROC randomForest rpart]; }; ecb = derive2 { name="ecb"; version="0.2"; sha256="17hj4d48j6rran64ajzlgkgz17mab51fa3lz8rm3mw0qhahkjlmc"; depends=[curl httr rsdmx xml2]; }; ecd = derive2 { name="ecd"; version="0.8.3"; sha256="0ksr5yixg4psgx4nf3y061k2fj5843f6f3xwbfl0nyfly8595s1x"; depends=[digest gsl moments optimx polynom Rmpfr RSQLite xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; @@ -5370,7 +5487,8 @@ in with self; { ecoengine = derive2 { name="ecoengine"; version="1.11.0"; sha256="1d5x6hvqrqjj0wg07m4dbgb9ljdq73ibavzy2q5magnfn50a7rzm"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; - ecoreg = derive2 { name="ecoreg"; version="0.2.1"; sha256="1v3n5nbabw6qmwcq3sx759k6c8q4pxbffl227rv0lnnfbq77zlmc"; depends=[]; }; + econullnetr = derive2 { name="econullnetr"; version="0.1.0"; sha256="0l4qy7x8f8sjc3s1bhz3kadfqifw0x9jl7dvcjwkh9q14h093cz5"; depends=[bipartite gtools reshape2]; }; + ecoreg = derive2 { name="ecoreg"; version="0.2.2"; sha256="1yzyqvhshgc7ip251y7hsvip4xwf8i92bvvz84mn0mzv5b4mq3im"; depends=[]; }; ecoseries = derive2 { name="ecoseries"; version="0.1.4"; sha256="0bvh2p3fv0lr55w2b86qzg1plw99q50nk0myxyxg6jv2q5aw3pp0"; depends=[magrittr RCurl readr rjson rvest tibble xml2 zoo]; }; ecosim = derive2 { name="ecosim"; version="1.3"; sha256="00arz8j2az1nn4p96pshw0p9xxq2qfgkyrf4ahvl1hp1h3k68jfn"; depends=[deSolve stoichcalc]; }; ecospace = derive2 { name="ecospace"; version="1.1.3"; sha256="01nxjbx638s8pk1ybsz9zbk35cg27x35fam419b9rjj9kspxz49s"; depends=[FD]; }; @@ -5383,7 +5501,7 @@ in with self; { edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; edci = derive2 { name="edci"; version="1.1-2"; sha256="10rqkimvmyb7hxp4wkpj8bq07q3yaimm058d4mmr09fw25lqyz1q"; depends=[]; }; edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; - edeaR = derive2 { name="edeaR"; version="0.6.0"; sha256="1042yy8hfh78ybwg1h35dx65hsawlrbcnnqq6ccvdww78amlrhkz"; depends=[bupaR data_table dplyr ggplot2 ggthemes glue lubridate miniUI shiny shinyTime tibble tidyr XML xml2]; }; + edeaR = derive2 { name="edeaR"; version="0.7.1"; sha256="1551hwl0gb55kkfpl990yhwa6l9hbx7a6bcggv5nkfqc66cs9rcm"; depends=[bupaR data_table dplyr ggplot2 ggthemes glue lubridate miniUI purrr shiny shinyTime tibble tidyr XML xml2]; }; edesign = derive2 { name="edesign"; version="1.0-13"; sha256="0fc3arr8x9x9kshp6jq4m4izzc5hqyn5vl0ys6x0ph92fc6mybp3"; depends=[]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; edfReader = derive2 { name="edfReader"; version="1.1.2"; sha256="02cclg549z6samhkraaknsmqvk0yxxcf4s9qpbcxb2cl9fcj1cjr"; depends=[]; }; @@ -5393,9 +5511,11 @@ in with self; { edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; edgeRun = derive2 { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table edgeR]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; + editData = derive2 { name="editData"; version="0.1.0"; sha256="1r4qji1dai6a0h3s4mmds4an09zdfzn0pzh8myxcc7h1q4psl0fl"; depends=[DT miniUI rstudioapi shiny tibble]; }; editrules = derive2 { name="editrules"; version="2.9.0"; sha256="14mfa8flkym2rx9n7bq9icc9fsrk3szib3amx5l0008rxll9qnxm"; depends=[igraph lpSolveAPI]; }; - edpclient = derive2 { name="edpclient"; version="0.1.0"; sha256="05wv6sf3kbzjs4ka6qi8acjm15l54kw0wgahh82w8nibw1fzv03n"; depends=[httr ini jsonlite plyr]; }; - edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.1"; sha256="09y63xj3gqrz66mym20g4pmfwrb0wnc2n67692hnqq8dz31q7p3i"; depends=[lasso2 MASS mvtnorm rgl]; }; + edmcr = derive2 { name="edmcr"; version="0.1"; sha256="1x0l963ccamfw6m9nsbqcfm45wxmq3jpfxzxmc4gxvpz8c7yf4jh"; depends=[igraph lbfgs MASS Matrix nloptr sdpt3r truncnorm vegan]; }; + edpclient = derive2 { name="edpclient"; version="0.2.0"; sha256="090yp94j3mm7g6lyc9vs8l1zhimnh9cizf55gw3g7ffqma2pl1rs"; depends=[httr ini jsonlite plyr]; }; + edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.2"; sha256="105jv2sz10xbl881lkhgmxzgmb8629mqsminhd197khrkf9nv40i"; depends=[lasso2 MASS mvtnorm rgl]; }; edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; educineq = derive2 { name="educineq"; version="0.1.0"; sha256="0qd6kvcy280glv3q6lcrawmnsfvp90as95chgi3hav0yj2dpakn6"; depends=[flexsurv ineq]; }; eechidna = derive2 { name="eechidna"; version="1.1"; sha256="01c1b41fzkq1hgg7705n96m1ji74gbfy9fisdj5pl0kgjhjiq24w"; depends=[dplyr ggplot2 ggthemes plotly rgdal rmapshaper rvest shiny shinyjs tidyr xml2]; }; @@ -5407,15 +5527,16 @@ in with self; { eeptools = derive2 { name="eeptools"; version="1.1.0"; sha256="161gxaqkab9bl915xspqrnm9r4r7ydki482s4axsb0wsqpf2jr13"; depends=[arm data_table ggplot2 maptools memisc vcd]; }; eesim = derive2 { name="eesim"; version="0.1.0"; sha256="0ljj1jp9cl0im8k7sfjd28ggj4q9a14df3554kwxkssr1vsn1wbc"; depends=[dplyr lubridate purrr viridis]; }; effectFusion = derive2 { name="effectFusion"; version="1.0"; sha256="1nx61n4lgnj6wh4arqm62p9xwxqvz4g7bs4b5k3ybkhmh6ns9v5l"; depends=[bayesm cluster ggplot2 MASS Matrix]; }; - effects = derive2 { name="effects"; version="3.1-2"; sha256="1fwkz6z3rya4qn476w9vni15rfvjp2ix87qk0naszn3n1k8bf0l0"; depends=[colorspace lattice lme4 nnet]; }; + effects = derive2 { name="effects"; version="4.0-0"; sha256="0h3247xcccanp0cp18r5k4l87i9862yjr5jc8sxcsfvjzn13xgf6"; depends=[carData colorspace lattice lme4 nnet survey]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; effsize = derive2 { name="effsize"; version="0.7.1"; sha256="0l0ja7qcknn8r5hf7nrjk5cy0ajw0z60ggbyj8qvjzf8qah4mlss"; depends=[]; }; efreadr = derive2 { name="efreadr"; version="0.2.2"; sha256="1h27by1m451wrnw017005avs5yj3fjzrm2lq5153aqm1mbbxxwvs"; depends=[dplyr ensurer magrittr readr]; }; ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; }; - egcm = derive2 { name="egcm"; version="1.0.8"; sha256="1mrbm0yzqw344fzgcbwc6bgdn8fv8id80jnfp3jaqjfslfhlpzx7"; depends=[fArma ggplot2 MASS tseries TTR urca xts zoo]; }; + egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; + egg = derive2 { name="egg"; version="0.2.0"; sha256="03k6xnbpakzgwlirxcvhrb10qh1pqvj9mv8rhr4snhnf753rb75j"; depends=[ggplot2 gridExtra gtable]; }; eggCounts = derive2 { name="eggCounts"; version="1.4"; sha256="04rhyfckkg3q6n6izbmhh1m6ywywvrr719isnx8qghlx774qab86"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rstan StanHeaders testthat]; }; egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; - eha = derive2 { name="eha"; version="2.4-5"; sha256="0c1fqvnijsaqsa4c4ss7c6lb9mr5p49bg2y4gmpc0wwyjm8xj0lx"; depends=[survival]; }; + eha = derive2 { name="eha"; version="2.4-6"; sha256="09wbyn0s2cfafjnaq5vb89l2j42irbxx70h6dk8flakp42p62i27"; depends=[survival]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; eiCompare = derive2 { name="eiCompare"; version="2.1"; sha256="0kv4k1zk1gz3fapy2i2ydy0n38hy95i10r3hr3dx8mkkf3nsj46h"; depends=[cubature data_table ei eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; }; eiPack = derive2 { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; }; @@ -5425,7 +5546,7 @@ in with self; { eive = derive2 { name="eive"; version="2.1"; sha256="1vazl5dnrvljd07csy9rjs4302w09h94i411gffg9fvxn70km7qg"; depends=[Rcpp]; }; eiwild = derive2 { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; - elastic = derive2 { name="elastic"; version="0.7.8"; sha256="0cji7nh6ghjx6di9mw103hyj2am5x75f2lpi0csswbv4r3mslirr"; depends=[curl httr jsonlite]; }; + elastic = derive2 { name="elastic"; version="0.8.0"; sha256="17aqf0a3spwh8k7s3kgnccbgad3sr3w63if96piygjz0lxgc7kzs"; depends=[curl httr jsonlite]; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; elasticnet = derive2 { name="elasticnet"; version="1.1"; sha256="1x8rwqb275lz86vi044m1fy8xanmvs7f7irr1vczps1w45nsmqr2"; depends=[lars]; }; elasticsearchr = derive2 { name="elasticsearchr"; version="0.2.0"; sha256="0hw2pwfh6k8q1646cprg3d84acwgw5bi7vmp7wrnxkxg7npz5pyz"; depends=[httr jsonlite]; }; @@ -5443,7 +5564,7 @@ in with self; { elo = derive2 { name="elo"; version="0.1.2"; sha256="00yrwzkgvxc7m5pnimr51b4h9vdw1cj17m6al14b3zs0yvf4a8v6"; depends=[Rcpp]; }; elrm = derive2 { name="elrm"; version="1.2.2"; sha256="0wz0l703v0iyp7nswdmh65n0cy3a7rfvyxd795a6nzk3nich8bfg"; depends=[coda]; }; emIRT = derive2 { name="emIRT"; version="0.0.8"; sha256="17igda5phgfapjzg7dkid5jj49gmwgpadjr27z7s21365i7md9mz"; depends=[pscl Rcpp RcppArmadillo]; }; - embryogrowth = derive2 { name="embryogrowth"; version="6.5"; sha256="1gbmrcjm8zwm01xq62wrkibmqnig904bnzrpar4d4qb98b6b3gp6"; depends=[deSolve HelpersMG numDeriv optimx]; }; + embryogrowth = derive2 { name="embryogrowth"; version="7.0"; sha256="0nc7nf1rcqfq4myhfmf0z07qy2damysc1xmfiy32wxjnjd7pqn7g"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.9"; sha256="09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="1.1.1"; sha256="1gbjx0pxfzkbp0csgq07iwqqww5lixpkvwn3k53na65gwx9afsq4"; depends=[boot FNN ggmap ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap reshape2 rgeos simFrame]; }; emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; @@ -5468,7 +5589,7 @@ in with self; { endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; endorse = derive2 { name="endorse"; version="1.6.0"; sha256="1j75sb2di2c092dilbjj5qsvb52h3zmm7wxflf9kg7xw227wq3zw"; depends=[coda]; }; endtoend = derive2 { name="endtoend"; version="1.0"; sha256="0x8f6h0mznmncqdwvsp2f0x524g5clgvk64qflf373lyn6h1v0ap"; depends=[]; }; - energy = derive2 { name="energy"; version="1.7-0"; sha256="1g4hqi6mgsnd1w4q7dd2m40ljh2jdmvad91ksbq9fscnrqpvji1x"; depends=[boot Rcpp]; }; + energy = derive2 { name="energy"; version="1.7-2"; sha256="19c7bgjnm4ggf7w5mk64c5shkma3sa9wc8x117iqv7pk1bvvyy3p"; depends=[boot Rcpp]; }; energyr = derive2 { name="energyr"; version="0.1.1"; sha256="1mid5f8l6v55pjzfx304a303mkn9b5r3jzmjl2fi2pz4v2jsdw04"; depends=[RgoogleMaps]; }; english = derive2 { name="english"; version="1.1-2"; sha256="1wlqpl85rq49ndrfqlixayp4zzvpad0snln5qirr1i3y2q510dgx"; depends=[]; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; @@ -5480,11 +5601,12 @@ in with self; { ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.4"; sha256="14zq22h8nna7j403c1x9py90fwas8fg0vq3im2zh31dyrk1j8d7k"; depends=[chron]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.8"; sha256="01pv3nhns9n5fwcngsgjj10657mfg27isxbnhfq36y4cv5igk4jk"; depends=[chron ensembleBMA evd]; }; ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; + ensemblepp = derive2 { name="ensemblepp"; version="0.1-0"; sha256="1b3rhg8mv1x3caz3xg84cwx8m88055n6yl36d9i4ws6vbj8vx68f"; depends=[]; }; ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; entropart = derive2 { name="entropart"; version="1.4-7"; sha256="18h8jzan7q9wkz0awpzlypvz8xzq7ak0j21jy7nk02k64v7zkpch"; depends=[ade4 ape EntropyEstimation geiger vegan]; }; entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; - envDocument = derive2 { name="envDocument"; version="2.3.0"; sha256="151ibmkq63r7lvh5lrszy7wsmrygvr2789lhcfp11nw3d39b4rqc"; depends=[]; }; - enveomics_R = derive2 { name="enveomics.R"; version="1.1.5"; sha256="0zb7bl92n2h3hhrs7slbqizkjk0rg47lmahmrg9sk0px7ncbjhmv"; depends=[fitdistrplus investr modeest sn]; }; + envDocument = derive2 { name="envDocument"; version="2.4.0"; sha256="0r7h9p0b0gr2l18mv1ydlamsc0iq474dfhp450mdfnw2q289mhrn"; depends=[]; }; + enveomics_R = derive2 { name="enveomics.R"; version="1.1.6"; sha256="115rqddy5llsncj5nbscan26lqr8x9fmyxxl3c8gpiyil8c266ja"; depends=[fitdistrplus investr modeest sn]; }; enviGCMS = derive2 { name="enviGCMS"; version="0.3.4"; sha256="1wjf1rxwzd590qsyljw1pd59kppx91m32p6nkdy4yvbnv39rk8dq"; depends=[BiocParallel genefilter limma mixtools qvalue rcdk RColorBrewer sva xcms]; }; enviPat = derive2 { name="enviPat"; version="2.2"; sha256="1cf1h4v05riivjwil4167sncdxzgxf3r4snx1imjb6s4msx67ibi"; depends=[]; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; @@ -5500,7 +5622,7 @@ in with self; { epidata = derive2 { name="epidata"; version="0.1.0"; sha256="1lp6hnjzga787abq94k8v48wlikpp5hj1xwmxc8nj1imyr4r8a4h"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; }; epifit = derive2 { name="epifit"; version="0.1.2"; sha256="1i1ngb5kh03gyx1702fwav3dc3mqry1wjzc7ry36hdw0ngawid34"; depends=[MASS]; }; epinet = derive2 { name="epinet"; version="2.1.7"; sha256="10mqc3xy24mjbk9np5mp41216hj6yc9jqxl3ybgysmd80y3qgf39"; depends=[network]; }; - episensr = derive2 { name="episensr"; version="0.9.0"; sha256="1ldg4flzbia6mk1w88jwj5c2p1cx73izhx2j3nfj57rc1i1lzmih"; depends=[boot ggplot2 gridExtra plyr reshape trapezoid triangle]; }; + episensr = derive2 { name="episensr"; version="0.9.1"; sha256="1sb0lq0rqk5n7l2d62z8832xzx7cf2f25b01bc3nf6v763yrh20g"; depends=[boot ggplot2 gridExtra plyr reshape trapezoid triangle]; }; episheet = derive2 { name="episheet"; version="0.2.0"; sha256="15c4xbam9b60xkkgmbswj4raln49hk43pxp2l75a7j1wykgkif95"; depends=[dplyr ggplot2 magrittr tidyr]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; @@ -5532,12 +5654,13 @@ in with self; { errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; errorlocate = derive2 { name="errorlocate"; version="0.1.2"; sha256="1qlwdvy7i62hpnfrryzmqwmygxa8mjc7q92g6k5n9r2r179q7h09"; depends=[lpSolveAPI validate]; }; - errors = derive2 { name="errors"; version="0.0.2"; sha256="1gpzhadlk34vaqlldgsh2sknb8ff2qf5lxfmh5dfs057gjp1p83d"; depends=[]; }; + errors = derive2 { name="errors"; version="0.1.0"; sha256="0d9wa1wjyd69ym3har51ycggcs66y5z5qzv7r3r2ss7impsvghz3"; depends=[]; }; esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esaddle = derive2 { name="esaddle"; version="0.0.3"; sha256="04imppwls6a485kdfwykk4s0pyxas3i92ccghi780ys29y0nggmy"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; esc = derive2 { name="esc"; version="0.3.1"; sha256="0ihld8sklgr2waif3n8ca96x7z5zi1wi4ygf50x5n8h47p0hrj3v"; depends=[dplyr purrr readr sjmisc tibble]; }; eshrink = derive2 { name="eshrink"; version="0.1.0"; sha256="0s1jl652za7qwv70kmc1h3vbwlijl49527pwpm0z347lz2jdcigj"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; + esmprep = derive2 { name="esmprep"; version="0.1.0"; sha256="0yv73czpvl6xdwwcxgssm6yw33lr3s27v4r67gcbslnidhcbq192"; depends=[lubridate]; }; esreg = derive2 { name="esreg"; version="0.3.1"; sha256="19ikfy0g8yd224ah4gyq2k29lz3gagc6vrcv53awvdadqw0cpz8l"; depends=[quantreg Rcpp RcppArmadillo]; }; estatapi = derive2 { name="estatapi"; version="0.3.0"; sha256="0gjc5x1b2l5qnwdg77nzy6d7bf9q93ll39sfy89izqm8wsydwwkp"; depends=[dplyr httr purrr readr]; }; estimability = derive2 { name="estimability"; version="1.2"; sha256="13b80bpnbrarazjvnpnk91ljjsqgfm2fm3gy66aj09cmmsmv199h"; depends=[]; }; @@ -5565,7 +5688,7 @@ in with self; { evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; }; event = derive2 { name="event"; version="1.1.0"; sha256="1nq34bz9dsixidym3n255vmap3gjx9nfk8pc5s7w026faf96dr2v"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; - eventdataR = derive2 { name="eventdataR"; version="0.1.0"; sha256="1097938qw4xmv949zjjcj5cjixmngpszjcspqb52dv373a0sgd25"; depends=[]; }; + eventdataR = derive2 { name="eventdataR"; version="0.1.1"; sha256="1vabawwb41v3gs7x3s1w8nll02h544xbsr21c2wbdx9h304rs54m"; depends=[]; }; events = derive2 { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; }; eventstudies = derive2 { name="eventstudies"; version="1.2"; sha256="0z449j7yrd6j6hhacz6f048ibilib6m97684cz2wc4pqq2wlj8hg"; depends=[boot sandwich testthat xts zoo]; }; evidenceFactors = derive2 { name="evidenceFactors"; version="1.00"; sha256="12wndimbygn7h57f3q0xmxmvqrcdj98f0a58m22z2l0vmym53rhb"; depends=[sensitivitymv]; }; @@ -5584,7 +5707,7 @@ in with self; { exactci = derive2 { name="exactci"; version="1.3-1"; sha256="1mhigk1nzd24qhzgd1j96zlf38dr96c1y5jbmy6lz2sw7g4mmvgm"; depends=[ssanv]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; exampletestr = derive2 { name="exampletestr"; version="1.0.1"; sha256="0352rv81isk820srwfpz7bf3349fpbygbq06lmjz8qgjvdfl1r4i"; depends=[devtools filesstrings formatR magrittr purrr roxygen2 stringr]; }; - exams = derive2 { name="exams"; version="2.2-1"; sha256="0dz1ijdfikmxyrz33mz8qkf5kn9796c078ndqk5gfyyxl2jsj6jw"; depends=[]; }; + exams = derive2 { name="exams"; version="2.3-0"; sha256="0y21cx6knx253gka1bib8z0jmyndl4k7c2d8hfh3rwn5bdqyqj53"; depends=[]; }; excerptr = derive2 { name="excerptr"; version="1.3.1"; sha256="0z1qgivk4plfap9j1fllx6wdj6z4nyblgj0rqjvgalk1sjk9b5zl"; depends=[git2r rprojroot rPython]; }; excursions = derive2 { name="excursions"; version="2.2.2"; sha256="1f6vvv33205lj6hsmmhx3q82mkhh0shzyk5hrwzf2nh1cn61w1x0"; depends=[Matrix sp]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; @@ -5604,7 +5727,7 @@ in with self; { expp = derive2 { name="expp"; version="1.1"; sha256="13zbhkkcshqrpln5gsa051d390q9ij97lawsdbd5j7fj9hxm9pwh"; depends=[deldir rgeos sp spdep]; }; exprso = derive2 { name="exprso"; version="0.1.8"; sha256="1k3is8f4yfzzkcak9fmm2nk8vi85b0na5r96f3yjbc9qb0av9vb8"; depends=[affy Biobase cluster e1071 kernlab lattice MASS mRMRe nnet pathClass plyr randomForest ROCR sampling]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; - expss = derive2 { name="expss"; version="0.8.1"; sha256="12w5pg51j6hv48is9n4jpdfxrl3af0wf84fkql0mgaqdd8i4wy50"; depends=[data_table DT foreign htmlTable htmltools magrittr matrixStats]; }; + expss = derive2 { name="expss"; version="0.8.2"; sha256="1jsfpvxji8rwvp64x42nvkn9n4gbx36fvzbnbzbnk9jgxvkhs1zv"; depends=[data_table DT foreign htmlTable htmltools magrittr matrixStats]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; @@ -5615,7 +5738,7 @@ in with self; { extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; }; - extraDistr = derive2 { name="extraDistr"; version="1.8.6"; sha256="1bklj9d1m4wzbqq6nj80szzdilkcfb90wps19q77nrp8bhhhplqk"; depends=[Rcpp]; }; + extraDistr = derive2 { name="extraDistr"; version="1.8.7"; sha256="1r90q14snx6h665qkij1lza2bs87iw61y6waabdzw6p3cqgg4pds"; depends=[Rcpp]; }; extraTrees = derive2 { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; }; extracat = derive2 { name="extracat"; version="1.7-4"; sha256="1dply8sx9r9vshi5dycxs7bchf5g33qbq7w6i5w830glfy0lk3i5"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; }; extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; @@ -5634,20 +5757,18 @@ in with self; { ezsim = derive2 { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[digest foreach ggplot2 Jmisc plyr reshape]; }; ezsummary = derive2 { name="ezsummary"; version="0.2.1"; sha256="16rwg1h7gs7mnkmbwfb273fy1pwdq9ng6l4ad00anpmilqcck5ng"; depends=[dplyr tidyr]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.5-1"; sha256="034m2mmm6wmsjd41sg82m9ppqjf4b1kgw5vl2w7kzqfx0lypaiwv"; depends=[]; }; - fArma = derive2 { name="fArma"; version="3010.79"; sha256="1byxyy4afl1gq58r1cmc5p6frdr9rljr1x3pdnc8nj8rr65lkg72"; depends=[fBasics timeDate timeSeries]; }; - fAsianOptions = derive2 { name="fAsianOptions"; version="3010.79"; sha256="1w9ph3rz6cd7g275flzsnqxwd3r5xin6pkini8pbsi9s8hbqv3vl"; depends=[fBasics fOptions timeDate timeSeries]; }; fAssets = derive2 { name="fAssets"; version="3011.83"; sha256="0i3phc8kxwhzf6010bv5k2ff5zlv7aqrwavqmhly4wwby73i39yl"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; fBasics = derive2 { name="fBasics"; version="3011.87"; sha256="1x4jv4db0nr2fig6hglk0kv6j27ngkc8qzclgiklbl8wjfrrp9zh"; depends=[gss MASS stabledist timeDate timeSeries]; }; fBonds = derive2 { name="fBonds"; version="3010.77"; sha256="00rc3i0iyqcpsqvc036csa1c8gxwcnniwj3l2irmcalx4p8650w0"; depends=[fBasics timeDate timeSeries]; }; fCertificates = derive2 { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; }; fChange = derive2 { name="fChange"; version="0.1.0"; sha256="1pj4q9dsqqgv198kfv410qkpgynhd580bcsigmak598m5jx3rf7l"; depends=[fda lattice reshape2 sandwich sde]; }; fCopulae = derive2 { name="fCopulae"; version="3011.81"; sha256="0r4g567icgiiz6cxi6ak3kzrav9qzsc6zvww5dj1pd8mkd4r1f0y"; depends=[fBasics fMultivar timeDate timeSeries]; }; - fDMA = derive2 { name="fDMA"; version="1.1"; sha256="16ff6v8b71wxk5f35s9m1cybl22ck98kgl8gl3czkyxshbhnxlyw"; depends=[doParallel foreach forecast gplots iterators MSwM png xts zoo]; }; + fDMA = derive2 { name="fDMA"; version="2.0"; sha256="06917d985gzjn7hv72gdz6ygxfqp98bsvdr48qfxv6n8822r5k7h"; depends=[doParallel foreach forecast gplots iterators MSwM png tseries xts zoo]; }; fExoticOptions = derive2 { name="fExoticOptions"; version="2152.78"; sha256="0h58prj8nh340b0fxxkgg4bk25yxvb4f8ppq677hr12x8sysf1a8"; depends=[fBasics fOptions timeDate timeSeries]; }; fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[fCertificates Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3010.81"; sha256="0bzgnn0wf7lqhj7b2dbbhi61s8fi2kmi87gg9hzqqi6p7krnz1n5"; depends=[fBasics fGarch fTrading timeDate timeSeries]; }; fGarch = derive2 { name="fGarch"; version="3010.82.1"; sha256="0n5mzqc7lj7h63rf4nw4w3mics02gaf049c7m3bjfbp5cwwnf9pf"; depends=[fBasics timeDate timeSeries]; }; - fICA = derive2 { name="fICA"; version="1.0-3"; sha256="0gbmjg1az3v413xgdzkjinfy5wri8963w38jnk0p0h2zd8gdkpfs"; depends=[JADE Rcpp RcppArmadillo]; }; + fICA = derive2 { name="fICA"; version="1.1-0"; sha256="0lfs31clax57qsrriq9wxjrjv2bckl7lf1csffzfwiqm6sp6mgxg"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="3000.82"; sha256="07yqppl8sbfa0x9k4n7hh6hcgyxpcvlk74hhylib4nzqm70bn0sq"; depends=[timeDate timeSeries]; }; fMultivar = derive2 { name="fMultivar"; version="3011.78"; sha256="115hqbbxsdjs5v2rhalg8vz0m5lyg8ppjjqmbq1x21jdnbg6l0fl"; depends=[cubature fBasics mvtnorm sn timeDate timeSeries]; }; fNonlinear = derive2 { name="fNonlinear"; version="3010.78"; sha256="0pmz16b606i3mx05zjln4nyl53ks7rlwgm45ldr9qgmw51pflwz9"; depends=[fBasics fGarch timeDate timeSeries]; }; @@ -5685,26 +5806,29 @@ in with self; { fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fast = derive2 { name="fast"; version="0.64"; sha256="098rk6kszdx3szcwvwzcv7zlcd6qvqvbqch7q8ilas6vbki81ba4"; depends=[zoo]; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; - fastDummies = derive2 { name="fastDummies"; version="0.1.1"; sha256="0h2xqhsiwm0palkdckkh3k38yw3sf775w3vzysz9msrgf1nnasxl"; depends=[data_table]; }; + fastDummies = derive2 { name="fastDummies"; version="0.1.2"; sha256="15c5rkz4d7ghmm052ybd4l0gbbyr0wrihal4fi5y6cvss1jja7gq"; depends=[data_table]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp]; }; fastGraph = derive2 { name="fastGraph"; version="1.1"; sha256="1vbi5yssnh8hcbmrq1r437vpvj8hqd3vc8wmcy0nbyvnmyjaxkvb"; depends=[]; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; fastICA = derive2 { name="fastICA"; version="1.2-1"; sha256="108z2ymby5y4h8l4l2krqwm28rya93gq09yylgilnm3afvfrfabg"; depends=[]; }; fastJT = derive2 { name="fastJT"; version="1.0.4"; sha256="1pa4qpcf4qmzk6s8qgk60n5ialz8gcj5m8d7xr10cmn4jfwghc7b"; depends=[Rcpp]; }; - fastLink = derive2 { name="fastLink"; version="0.1.1"; sha256="0m81ad6j0s328jf531dfglppfq5xqs1kvkzfar0az8l6xnr9i6sx"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix Rcpp RcppArmadillo RcppEigen stringdist stringr]; }; + fastLink = derive2 { name="fastLink"; version="0.2.0"; sha256="1n8yzwlcvj1bcdzxvlprh5q3wk2mbw7jpc40bjc5mpgrx0vpf95c"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; fastM = derive2 { name="fastM"; version="0.0-2"; sha256="0q5dz47sqj6d4r3k6l6q34l5ajb8fjbf7xam75scp0mg3czswnfn"; depends=[Rcpp RcppArmadillo]; }; fastR = derive2 { name="fastR"; version="0.10.3"; sha256="1sz6krxiamq3rp4h9ah2b1zvyyrlvsn7lpvrjv1xda2c1kqqkvmk"; depends=[lattice mosaic mosaicCalc mosaicData]; }; + fastR2 = derive2 { name="fastR2"; version="0.2.0"; sha256="1xwa4v0j2n0qxn1prhc9x0sz53fhsfbg2m1a6kfdp7cpvvk46pw5"; depends=[dplyr ggformula ggplot2 lattice magrittr maxLik miscTools mosaic numDeriv]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.0"; sha256="1x4kxys7mxlxz7cfbjig44za8m8p19xgzcs5y2wn9320sx8b0wc0"; depends=[]; }; fastTextR = derive2 { name="fastTextR"; version="1.0"; sha256="0l0f9jvsa68a3vd6mwbhsqd12729nd6nwsnlzrhsg9wj9rx8kpmi"; depends=[Rcpp]; }; fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; fastcluster = derive2 { name="fastcluster"; version="1.1.24"; sha256="15drhl22wm8whsy6b3vv754skfddiydb068zn1whrw5sknvkkjc2"; depends=[]; }; fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; + fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; fastnet = derive2 { name="fastnet"; version="0.1.3"; sha256="06nxfwv85gm93bcgq53a6z929sqcij0adkg55g5y03hcm8v8v3aa"; depends=[doParallel foreach igraph]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; fastqcr = derive2 { name="fastqcr"; version="0.1.0"; sha256="0hzlp66as7k0bh3biqkngacpkq1hi3y3gp6wg4c5476ywzm83gra"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; + fastrtext = derive2 { name="fastrtext"; version="0.2.1"; sha256="06r8bqkc415n1ycq8nqpffq5wp053s2yz50v2k5sbg36laqyschi"; depends=[assertthat Rcpp]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.2"; sha256="1xqr4azc5gsr7kcm8qzwjpjy72w1b111i61wbm35vns9r38a6cxz"; depends=[kinship2 multgee]; }; fauxpas = derive2 { name="fauxpas"; version="0.1.0"; sha256="1mi19zrgkx25g8j1f948n0ps27dn0rr2jqnhf15w73lpsjbwvi54"; depends=[httpcode R6 whisker]; }; @@ -5719,17 +5843,18 @@ in with self; { fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; }; fcros = derive2 { name="fcros"; version="1.5.4"; sha256="112mgs69p3642rfk1w3dkkyn72icvda0asllanmgjym1lrzdp0lj"; depends=[]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; + fdANOVA = derive2 { name="fdANOVA"; version="0.1.0"; sha256="10c12yns1sv4ph61hma1mymab03xyyx933f27977lw3c0npy7b02"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; fda = derive2 { name="fda"; version="2.4.7"; sha256="0371c32kxxvfdh18ldgc2p76dr2436ay0n9prdjwm9v0azp4rp9k"; depends=[Matrix]; }; fda_usc = derive2 { name="fda.usc"; version="1.3.0"; sha256="1ask7g6mqwx8r1hd9vxzdl96z0gyqprswjpfcl7l5l3611m7mzdm"; depends=[fda MASS mgcv nlme rpart]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.5"; sha256="1k2b3z2jj37j6njvxalg8640zlcvi1cm7wkcwp0pia21wydz75ip"; depends=[Formula Rcpp RcppArmadillo]; }; fdaPDE = derive2 { name="fdaPDE"; version="0.1-4"; sha256="0n72x5h00n17yxjniim2qxz2phy1srk04dn6ivvc58k3x252fzkh"; depends=[RcppEigen rgl]; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdapace = derive2 { name="fdapace"; version="0.3.0"; sha256="1r4s20spsiags7z8hyvbvi9gxjxs4v8hfnrqya872shagk9iadyl"; depends=[Hmisc Matrix numDeriv pracma Rcpp RcppEigen]; }; - fdasrvf = derive2 { name="fdasrvf"; version="1.8.1"; sha256="189yr8y2wypqsyd3smzm852k7da9ssd3gv5y8jy1f1rs501m7pnb"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo viridisLite]; }; + fdasrvf = derive2 { name="fdasrvf"; version="1.8.2"; sha256="10j2zh0jfxi46vf2cf9k561ff3qy6vhp1hj1q2zwvpbxaa1lyjb3"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.0.0"; sha256="1m6yk6ngsxrz5mywp3vqhfjpkskrzgdyvqw7j8k2jgy4l0x04g5g"; depends=[corrplot matlab]; }; fdq = derive2 { name="fdq"; version="0.2"; sha256="1iyplxm6niywfhmdnliy9nvvax1w6sijar8gpsj853cdfvn6kz5m"; depends=[data_table Fgmutils ggplot2 plyr randomcoloR sqldf]; }; - fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.0"; sha256="1388a9hjbgblmhx5f3ddk16kigzsik9bvw179d1szk33kadfq2vp"; depends=[edgeR MCMCpack]; }; + fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.1"; sha256="0vhm40q63sknzh7ax4mhv41vpg2pn4cinsln6wfk3q4nqkn7bd45"; depends=[discreteMTP MCMCpack]; }; fdrci = derive2 { name="fdrci"; version="2.1"; sha256="1sgrsmlz7sbr1maw3qnpzqz3z75fh5nyiibpsq8j0y12xac8d0x3"; depends=[]; }; fdrtool = derive2 { name="fdrtool"; version="1.2.15"; sha256="1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5"; depends=[]; }; fds = derive2 { name="fds"; version="1.7"; sha256="164f2cbywph7kyn712lfq4d86v22j4y3fg5i9zyz956hipqv0qvw"; depends=[rainbow RCurl]; }; @@ -5738,12 +5863,12 @@ in with self; { feature = derive2 { name="feature"; version="1.2.13"; sha256="07hkw0bv38naj2hdsx4xxrm2dngi6w3rbvgr7s50bjic8hlgy1ra"; depends=[ks misc3d rgl]; }; features = derive2 { name="features"; version="2015.12-1"; sha256="0rd8r1dxzddb6718hcm8ck7531c9wdrjfy8n67875bbxgzcvds61"; depends=[lokern]; }; featurizer = derive2 { name="featurizer"; version="0.2"; sha256="05jvwsvpbdj94q3wl7ld6xmfc9p7ff9zsmryd3mmxz0hzbq2cnkc"; depends=[]; }; - fecR = derive2 { name="fecR"; version="0.0.1"; sha256="0w31hr2j80ppzwgpnbalkgrxz7ijfr43yw7xk9rjkl8gw2nq4kg6"; depends=[lubridate plyr]; }; + fecR = derive2 { name="fecR"; version="0.0.2"; sha256="1p4166cxajapm158aqbz9p7m8c8dqga1infl6y6wazjnayaib3cb"; depends=[lubridate plyr]; }; fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; feedeR = derive2 { name="feedeR"; version="0.0.7"; sha256="08mnfi96qkr1fj53ywqmya957swcwrfd3hqk0qaf2ni96sxxnp98"; depends=[digest dplyr lubridate RCurl XML]; }; fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; - fergm = derive2 { name="fergm"; version="0.2.0"; sha256="0mgrbhskxgzkrqg8z31zv2821iwimmwimkg6f9bzg7ib8yn4hfli"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan scales statnet stringr]; }; + fergm = derive2 { name="fergm"; version="0.2.1"; sha256="14asdvr98nh6rayqff9xda54w95bjg4g2f72a21rhyc932d7589g"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan statnet stringr]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; fetchR = derive2 { name="fetchR"; version="2.1-0"; sha256="1rrmky1wg2wz4m8nmvdxwbs4yxnwgdchddvh1dhp171364as3536"; depends=[plotKML rgdal rgeos sp]; }; ff = derive2 { name="ff"; version="2.2-13"; sha256="1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"; depends=[bit]; }; @@ -5771,8 +5896,7 @@ in with self; { finch = derive2 { name="finch"; version="0.1.0"; sha256="0pqli6l049s9pdk0gphch1pw8i0f1fr3562akms1x7hvdkn9c0i9"; depends=[data_table digest EML plyr rappdirs xml2]; }; findpython = derive2 { name="findpython"; version="1.0.2"; sha256="1x38dbxr6yvxy2z2fvv00y263g66ljbzf3a8znl2fywj462i92xk"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; - fingerprint = derive2 { name="fingerprint"; version="3.5.4"; sha256="0raxsyni8kbq7q2sfkp4bx6mh8wdk9mxplzi4fbqcf78cxk9bla7"; depends=[]; }; - fingertipsR = derive2 { name="fingertipsR"; version="0.1.0"; sha256="0l19ipmi4zdbckyzz38y8lvq3wfw67aqm8rk6fjyfmr9xbfx5vjc"; depends=[dplyr jsonlite tidyjson]; }; + fingerprint = derive2 { name="fingerprint"; version="3.5.6"; sha256="1qidi88i1wh0gpicklk0f0l4j3azwmh0crpwnandkjx4nk1pfxxs"; depends=[]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finreportr = derive2 { name="finreportr"; version="1.0.1"; sha256="1mansiyl4p4zqc1h2aw9zgzb3fy4mppgmshdm8mcf4nbm340g4vk"; depends=[curl dplyr httr rvest XBRL xml2]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; @@ -5806,7 +5930,7 @@ in with self; { flexrsurv = derive2 { name="flexrsurv"; version="1.4.1"; sha256="13jq7yk7rz2148wkf7dv28l79zwdf1gpfkd5khgacb8hl5kml3p0"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis survival]; }; flexsurv = derive2 { name="flexsurv"; version="1.1"; sha256="1vj8zsfgq2rv6v7na4w7n7z3farc69qsavm7pnmnhkaylz61gq26"; depends=[deSolve mstate muhaz mvtnorm quadprog Rcpp survival]; }; flexsurvcure = derive2 { name="flexsurvcure"; version="0.0.2"; sha256="1lhw2z8i4l822ncziwpw6hg0dzc244q60n7l5aahgdhcr0xgylhz"; depends=[flexsurv gtools survival]; }; - flextable = derive2 { name="flextable"; version="0.2.0"; sha256="0541vawawdvxym5prya2nahsr2v6wyxqq2n4b3rm39wvz5c0gp4y"; depends=[dplyr gdtools htmltools htmlwidgets lazyeval magrittr officer purrr R6 stringr tibble tidyr]; }; + flextable = derive2 { name="flextable"; version="0.3.0"; sha256="0pim9yw33v608c9vjvz0r4xw44v8wwncvnv5j6k5ppm9nmz2x51x"; depends=[gdtools htmltools htmlwidgets lazyeval magrittr officer purrr R6 stringr tibble]; }; flifo = derive2 { name="flifo"; version="0.1.4"; sha256="1yilfnblarimc8mlvvwsgib5sxcfgvgsvgpyzddxb39g6fb7lffs"; depends=[bazar pryr]; }; flip = derive2 { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1wfrzxhfhchr33ghk7prhc7k4b8"; depends=[cherry e1071 Rcpp RcppArmadillo someMTP]; }; flippant = derive2 { name="flippant"; version="1.1.0"; sha256="06aj90y7c33c1q0nw1c67vr1pfmp9fw78az6ivrbq110f2k1m12w"; depends=[assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr RcppRoll stringi withr wmtsa]; }; @@ -5842,20 +5966,20 @@ in with self; { forcats = derive2 { name="forcats"; version="0.2.0"; sha256="1mvwkynvvgz2vi8dyz11x7xrp53kadjawjcja34hwk1d89qf7g5m"; depends=[magrittr tibble]; }; foreach = derive2 { name="foreach"; version="1.4.3"; sha256="10aqsd3rxz03s1qdb6gsb1cj89mj4vmh491zfpin4skj1xvkzw0y"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; - forecast = derive2 { name="forecast"; version="8.1"; sha256="1f49rxrls2721p9jb6krq6d4qnhdjm4z76kwr1k45sgh2km27s61"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; + forecast = derive2 { name="forecast"; version="8.2"; sha256="04mqx1szm22lhiqzncm8ad0kyqhv1y4d6v02gn70d78kxmjangzb"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; forecastHybrid = derive2 { name="forecastHybrid"; version="1.1.9"; sha256="03wkfzlg8pcpalakq5cgmhcy9p7ds4x0hqnhsiaja4zghrqbj5b6"; depends=[doParallel foreach forecast ggplot2 reshape2 zoo]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.2-0"; sha256="1rnf2a7sri52sm976iicab660qk07pmz8jmd3q71dg4hmc30yf9j"; depends=[Rcpp]; }; - forega = derive2 { name="forega"; version="1.0"; sha256="0xf9almfikfkxq8mm09lzrvav2v5cg0avpz99i6h5i9qliix1q6r"; depends=[forecast Rcpp robfilter]; }; + forega = derive2 { name="forega"; version="1.0.2"; sha256="0kkfpj63rf6m7zi8pyi4n4m7gihfyfmaws2syw0znpvcd6d6m2l5"; depends=[forecast Rcpp robfilter]; }; foreign = derive2 { name="foreign"; version="0.8-69"; sha256="0s1lxmd85dd0kxx8hwk02w9l7pmpk4bpy7787fbyh2dbq5g9ys0k"; depends=[]; }; forensic = derive2 { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; forestFloor = derive2 { name="forestFloor"; version="1.11.1"; sha256="1sslxq44qmmmdhr7800bz8lj9w2l7f7x1vly3w2z7j1qdijc7nw7"; depends=[kknn randomForest Rcpp rgl]; }; forestinventory = derive2 { name="forestinventory"; version="0.2.0"; sha256="09r5m0nal3ac2aiyqm7ppkcipnjhls5197lmg5xbnllw4icvpfy0"; depends=[plyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.4.3"; sha256="1v1m8dvird2r1jqig492msqpp9sb4s79bhgnrs9y2c0ba46jzykh"; depends=[broom dplyr ggplot2 lazyeval]; }; - forestplot = derive2 { name="forestplot"; version="1.7"; sha256="0sxbh7chmy3aixvwks2mzzx0n6h9zkk6c4nsw3ihll213x8pph4q"; depends=[checkmate magrittr]; }; + forestplot = derive2 { name="forestplot"; version="1.7.2"; sha256="1cqk0fwpbn4an6xn28kpvqmcp3mgv8isg8dy755sv5fkqzzjz1dg"; depends=[checkmate magrittr]; }; formatR = derive2 { name="formatR"; version="1.5"; sha256="19sd23vgs4ac0fwlw40j3676k6mramb0ajlq8hdw23kjwdx1jk47"; depends=[]; }; formattable = derive2 { name="formattable"; version="0.2.0.1"; sha256="1s7jjgm0j24vdwm39933ygh6xnxcfvzy4kl2mmfgas4czfcmd4rf"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; - formula_tools = derive2 { name="formula.tools"; version="1.6.1"; sha256="14n89fljl5x24fka2jab41hwqmjq3a2yl02n58n1li20wrl3zagj"; depends=[operator_tools]; }; + formula_tools = derive2 { name="formula.tools"; version="1.6.8"; sha256="10j7cgzdfkpqnxy9jpw5yd1bwrz55yi8b1zn144wwqb779l2c5yn"; depends=[operator_tools]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.3"; sha256="0swn5ysp3f660kl9jpmkck9324j1g3yhj2hl238rfrcr5wihxifc"; depends=[MASS]; }; forwards = derive2 { name="forwards"; version="0.1.0"; sha256="0pb101gdf2a4plalhhm34aixkss3lzfg8yj6yfi0d6khjmaza33i"; depends=[]; }; @@ -5878,10 +6002,10 @@ in with self; { fractalrock = derive2 { name="fractalrock"; version="1.1.0"; sha256="15f4w8hq3d8khgq269669ri16qxhar9646w40cw7wzh79r9gpf00"; depends=[futile_any futile_logger quantmod timeDate]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fragilityindex = derive2 { name="fragilityindex"; version="0.1.0"; sha256="06f7w0ff8mmydgylz5a0z29fc78spvmay3sjq0rz9k44w4bb9z3q"; depends=[pbapply stringr survival]; }; - frailtyEM = derive2 { name="frailtyEM"; version="0.7.0-1"; sha256="1h8ygph0b7w623wf0r7zvq70lk6z2y96j608hxxiqslpnssicx9h"; depends=[expint ggplot2 magrittr msm Rcpp survival]; }; + frailtyEM = derive2 { name="frailtyEM"; version="0.7.2"; sha256="05ar0lypm4xbajxvdilv7l55zr6j83fkp1fi3krpswfaf6yk0yfn"; depends=[expint ggplot2 magrittr msm Rcpp survival tibble]; }; frailtyHL = derive2 { name="frailtyHL"; version="1.1"; sha256="1xjdph0ixanf9w4b6hx6igfhkcp8h93sclrg0pgqgmbvm41lhb1x"; depends=[Matrix numDeriv survival]; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.2"; sha256="0qsq96p29rxlfkhbmg8cfqdnpzh8wq2nadpiim9d6l0bs20r51gl"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; - frailtypack = derive2 { name="frailtypack"; version="2.12.3"; sha256="195j0k2wddlfdcxd3jwalkrgpmang3m94s2c9crgdjr3bv46wphx"; depends=[boot MASS nlme statmod survC1 survival]; }; + frailtypack = derive2 { name="frailtypack"; version="2.12.5"; sha256="0qqy5jp77fkcfxp44k2g6wzccsfg0cv3xd4pdzqizl6dyfdbf3rz"; depends=[boot MASS nlme statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; franc = derive2 { name="franc"; version="1.1.1"; sha256="0agrzdrgfw4a3jn6a2867rf99a87ngv6wi73ys2l7gr7mkpq54v5"; depends=[jsonlite]; }; frbs = derive2 { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; @@ -5890,7 +6014,8 @@ in with self; { freesurfer = derive2 { name="freesurfer"; version="1.0"; sha256="0wsj5px7apfia55kajxhh5717sp6n1lh8wr1bdbk6v29cq4svvd6"; depends=[neurobase R_utils reshape2]; }; freqMAP = derive2 { name="freqMAP"; version="0.2"; sha256="02hpkqqrxifrr1cxn5brp166jwa8lgl1mcgmq7s8csrbbd900ziv"; depends=[]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; - freqdom = derive2 { name="freqdom"; version="1.0.4"; sha256="0flx4316q8m9v5zy8bxjp18a25p1vwq6wvfs81r0g609ag54vy5b"; depends=[mvtnorm]; }; + freqdom = derive2 { name="freqdom"; version="2.0.1"; sha256="0ig0ygnlcb5ndjjm5x8jpp37gvgwli9xv6zsvbbgfh72q418qswp"; depends=[matrixcalc mvtnorm]; }; + freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; frequencies = derive2 { name="frequencies"; version="0.1.1"; sha256="0d52kf4r13n59990xhra9i6gfvs4sn7ix54d0c0g56p1rj7hnh79"; depends=[dplyr]; }; frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.1.6"; sha256="06lqy1w3j0k3wddazk9a8pj076sjpr986756cx2z11s6a9j4pkfx"; depends=[urca vars]; }; @@ -5931,17 +6056,18 @@ in with self; { funrar = derive2 { name="funrar"; version="1.2.0"; sha256="0dsp3aldvnc7lkp6sl89p0i7yga7wvjvl77zkjgjhxwpr8a2ry22"; depends=[cluster dplyr]; }; funreg = derive2 { name="funreg"; version="1.2"; sha256="199zvqali0sb0z4yp20rm5da0kd7z3rgv47g1cb1apsbcw0cq51n"; depends=[MASS mgcv mvtnorm]; }; funtimes = derive2 { name="funtimes"; version="4.0"; sha256="0a0xpybalk38p3n0fd5f3g4yav99j6ck03d1pkx0w2yqqxnviqhw"; depends=[dbscan Jmisc Kendall]; }; - furniture = derive2 { name="furniture"; version="1.5.4"; sha256="1lmxrmlkxn7l42mgl7ln9cvlmvwlmyim9k5ldnrb9wjrsh64bfhc"; depends=[knitr]; }; + furniture = derive2 { name="furniture"; version="1.6.0"; sha256="0gd61sf3n6mb0z4wnmdq1ifw6b73saafbrfscf7m8fz6ml6rfiy2"; depends=[knitr]; }; fuser = derive2 { name="fuser"; version="1.0.0"; sha256="0l2ddc3lal3gvzkn8b09i7pzd9nvqnr45naz3ni52nmgygwdk5ma"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; }; + fusionclust = derive2 { name="fusionclust"; version="1.0.0"; sha256="1h03nlk4gnz4j5h2h5bxazkka2qq983h7nglm1ghzqvbqjk6sv37"; depends=[bbmle]; }; futile_any = derive2 { name="futile.any"; version="1.3.2"; sha256="09z12dlj7cnkfwnmgsjknsghirv1cry83w4a9k4d0w5a1jnlr5jg"; depends=[lambda_r]; }; futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; futile_matrix = derive2 { name="futile.matrix"; version="1.2.6"; sha256="10v7ffjm8az75lb39526p3y8b1zhmmzx07pybiy20zydznhyvv2p"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; futile_options = derive2 { name="futile.options"; version="1.0.0"; sha256="1hp82h6xqq5cck67h7lpf22n3j7mg3v1mla5y5ivnzrrb7iyr17f"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; futility = derive2 { name="futility"; version="0.1"; sha256="0nbsdk4abjshjvd4nrcx0ai88h2i8lf3ml1prz83zsvivb8dnam0"; depends=[]; }; - future = derive2 { name="future"; version="1.6.0"; sha256="030bp0s511m65ncilq65r45jgbv6cg8zaf6x66yhpg21pafkc7ys"; depends=[digest globals listenv]; }; - future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.14.1"; sha256="0wa97z4mkip29mqaj0hp9iscvnmphidrp0l637qv53m2cfvmg62z"; depends=[BatchJobs future R_utils]; }; - future_batchtools = derive2 { name="future.batchtools"; version="0.5.0"; sha256="1agv44cwf3l0ax7nra83j96l17lyvrbxzyssrggilafxla3bfzrp"; depends=[batchtools future]; }; + future = derive2 { name="future"; version="1.6.1"; sha256="07fy6njcpc823i04f6i6k0likq84n5ybp0dpvqh12ll6pzgl338v"; depends=[digest globals listenv]; }; + future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.15.0"; sha256="0r1bnp9mnv8jk9d6dpr94cqn4zihpm7cgxqj0c3l0x9b6i0ny3z2"; depends=[BatchJobs future R_utils]; }; + future_batchtools = derive2 { name="future.batchtools"; version="0.6.0"; sha256="0npvy8d927k3ilmnwcq1fh5lvpdr009pyc93ils5qhwhfma3wfh0"; depends=[batchtools future]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.1"; sha256="10f9qd7cn0sqk02b5p1iq9prf5kjdivn0fkky4lb7chqvk2cwbv5"; depends=[assertthat progress purrr]; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; @@ -5982,7 +6108,7 @@ in with self; { gWidgetstcltk = derive2 { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[digest gWidgets]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; gaiah = derive2 { name="gaiah"; version="0.0.2"; sha256="1qc3crjxramyxl86dp8mcmvskixny7x6ji0jqf5dqf5r5qc7zrs9"; depends=[dplyr geosphere ggplot2 lazyeval magrittr maptools raster rgeos sp stringr tidyr]; }; - gains = derive2 { name="gains"; version="1.1"; sha256="1mn8db8yxgkf8z6nm6k76g5l3i3vnw750ksg3w9ysd2pcabb65g1"; depends=[]; }; + gains = derive2 { name="gains"; version="1.2"; sha256="1nmrhc7qjlyzn04r1qyjdws5fin3idmi789kbxzilax12ya8xr7k"; depends=[]; }; galts = derive2 { name="galts"; version="1.3"; sha256="0b18hsdcsx43rn8l4x9nhy9hgggjr5b8kvjnbxrf6r23qsdk43mn"; depends=[DEoptim genalg]; }; gam = derive2 { name="gam"; version="1.14-4"; sha256="13ma6zkqf1xlyrjlp228b2kq6pgh3fg9a7xmy3r3p0y40zvxfrba"; depends=[foreach]; }; gamCopula = derive2 { name="gamCopula"; version="0.0-4"; sha256="1nj5pxcbr6k7k1m44ky306yycpx20pw8awlx7lzyw1rx1hrv5ivb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; @@ -6047,26 +6173,28 @@ in with self; { gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; gdimap = derive2 { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; }; gdistance = derive2 { name="gdistance"; version="1.2-1"; sha256="1wygcx0iki7g10f9gjbycrjjadmsw3153ha9rnqvc9hwwf34m9y1"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.3.3"; sha256="0vn2hsacz8n2iikdva7csbxvvb6bk7p451k6phvrpgp87m712abv"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; + gdm = derive2 { name="gdm"; version="1.3.4"; sha256="1z2g1gn8vxrcvyq5lw78wizilcq741ka9xf3isj2wxfhx9a8mqzi"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; gdmp = derive2 { name="gdmp"; version="0.1.0"; sha256="1dlzxf17ssm10pw14mk5lk0plgav2mj8xf39dacyg9hlrz9pjwki"; depends=[]; }; gdns = derive2 { name="gdns"; version="0.2.1"; sha256="0dvrknhx0d00yi429zjdcs3ghgbpfjhrclkn6cicd049qdp4q396"; depends=[dplyr httr jsonlite purrr stringi tibble]; }; gdpc = derive2 { name="gdpc"; version="1.0.2"; sha256="03gh69vb3zmsi7rlikl3a7vr7sar3x12d8lar2qa0nfksn0qa6dk"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.0"; sha256="0kc3l93640x8d6g3pa9gbr7ci5hmryg9i1nqpasgnvb6ixv6azbm"; depends=[]; }; - gdtools = derive2 { name="gdtools"; version="0.1.5"; sha256="09y9x09gri33ghhrvjjnj5k5rk0kdpsk3wq02cln8gmywd6728vk"; depends=[Rcpp withr]; }; + gdtools = derive2 { name="gdtools"; version="0.1.6"; sha256="103wnc8sq0iwcnj4j14hd420d2dqdyf13s3f25icsznrlyzdkhf5"; depends=[Rcpp withr]; }; gear = derive2 { name="gear"; version="0.1.1"; sha256="1sqj9pz15j1v6fm4q2dp0zhdmy9zmmhmgxjwria5ihrp3b5hvwry"; depends=[lattice optimx sp]; }; gee = derive2 { name="gee"; version="4.13-19"; sha256="14n2fa2jmibw5j8n4qgbl8xbxhapmx4z3zrmkbcci39k9dsyplzb"; depends=[]; }; gee4 = derive2 { name="gee4"; version="0.1.0.0"; sha256="1vvzb9sc69g292zmh9djd15jgc7falypd5p7mzw6ps7mirpbnicf"; depends=[Formula Rcpp RcppArmadillo]; }; geeM = derive2 { name="geeM"; version="0.10.0"; sha256="0bk99kwh6xapkaxc3yis5x3d49j7pb45hq4ksbmkhz6ba21c4sn5"; depends=[Matrix]; }; geepack = derive2 { name="geepack"; version="1.2-1"; sha256="13fkz38rsdk1byv6rdpdmphz5dd31r4h8ms49hali6hjh5rydzvy"; depends=[]; }; geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; + geex = derive2 { name="geex"; version="1.0.3"; sha256="0px197mz3qfx7s4wfdjlgjpss03y7wid1qa34xf4xan05dnrrnzc"; depends=[lme4 Matrix numDeriv rootSolve]; }; geigen = derive2 { name="geigen"; version="2.1"; sha256="1alssnwypnf20bc26q50baja6g0drwclajlsqamamss0mfc8hsnh"; depends=[]; }; geiger = derive2 { name="geiger"; version="2.0.6"; sha256="1zry3iclj7yciiiysbq6z0kn759c7hdy5fq0dcszkskqcd92qfz1"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; }; gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; gem = derive2 { name="gem"; version="0.19"; sha256="11gzqpc9s1bkx1w6ncjylmfqqf3wj5hgca4lzygvlni9xz7pk517"; depends=[signal]; }; - gemlog = derive2 { name="gemlog"; version="0.20"; sha256="1f36p2ggba2rkkp7i6y9sgwjg2ygjhb01ww8adfivksgj103ww8v"; depends=[signal]; }; + gemlog = derive2 { name="gemlog"; version="0.24"; sha256="10yw5q2mni3nls87hbsn3kndxj7ln81jhzb3nbqqnqknbmm55pqd"; depends=[signal]; }; gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; gemtc = derive2 { name="gemtc"; version="0.8-2"; sha256="0c2a9gz6rvsc5qh66ixxa4dz6lwhcmmsf2vnvxl98c9kbvdwfqm9"; depends=[coda igraph meta plyr Rglpk rjags truncnorm]; }; gemtc_jar = derive2 { name="gemtc.jar"; version="0.14.3"; sha256="18hbiygpsv67flc4v6z6mir0rfq41v1vsh11dg9phmdr8bx4kcl1"; depends=[rJava]; }; + genBaRcode = derive2 { name="genBaRcode"; version="1.0.0"; sha256="0313kyhy9bg9rabxk2jdgxq2brhj2kkiq0xyd3mlq6j9c626pqi8"; depends=[ape Biostrings ggnetwork ggplot2 igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist visNetwork]; }; genMOSS = derive2 { name="genMOSS"; version="1.2"; sha256="18qinckzz7wsw222skrq30izbj6s85i8hq6iicj9nng8gh6jydr8"; depends=[ROCR]; }; genMOSSplus = derive2 { name="genMOSSplus"; version="1.0"; sha256="1n3ngx1piy3l14k5k95wrgvrjw9238jkygfqanl3xg2na2mmkr26"; depends=[]; }; genSurv = derive2 { name="genSurv"; version="1.0.3"; sha256="0k5rfpq603szjb76gxffvsbqcav8182h8zwvg4kar68k72yfw1xs"; depends=[]; }; @@ -6075,6 +6203,7 @@ in with self; { gencve = derive2 { name="gencve"; version="0.3"; sha256="00wbmaffm7mbfv3zl6mb24w1df1a8p24girwdh3a522lw3045iwf"; depends=[C50 class e1071 glmnet lars MASS nnet plus randomForest rpart]; }; gendata = derive2 { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; }; gender = derive2 { name="gender"; version="0.5.1"; sha256="0qiwqnpk2pzwvvvnnny0wmmrix1aq3kwnk6n9jyvqzh0v9bzd65g"; depends=[dplyr httr jsonlite]; }; + genderBR = derive2 { name="genderBR"; version="1.0.1"; sha256="1sbxp0wz138xxcv31xz411gp7krzghvfmjfg5hmv66l8014s6s6c"; depends=[dplyr httr jsonlite]; }; genderizeR = derive2 { name="genderizeR"; version="2.0.0"; sha256="0r9r5x93zr58sfrww3l2vyvjyj8lir2yds08y6dzf88rs9v15w3c"; depends=[data_table httr magrittr stringr tm]; }; gendist = derive2 { name="gendist"; version="1.0"; sha256="0n3ax7iy40ymrxhmb88w31a4aacaps9f1iild42afin7i7vy4dq9"; depends=[]; }; geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; @@ -6084,7 +6213,7 @@ in with self; { genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.0.5"; sha256="17s3azcq1fjjqi5n8rw071k1as4nnwvppmdaz2l5scn0wv120vcq"; depends=[Rcpp]; }; - generalCorr = derive2 { name="generalCorr"; version="1.0.6"; sha256="0xiaw2ngqj4pigcj6dv0qbj20954m41cvhyjpznny23g85d47gk9"; depends=[meboot np psych xtable]; }; + generalCorr = derive2 { name="generalCorr"; version="1.0.8"; sha256="04mwx0hkg8k4fhw841l3nb3nly1s77kc6ivrnj3kv7z009f1a0jd"; depends=[meboot np psych xtable]; }; generalhoslem = derive2 { name="generalhoslem"; version="1.2.5"; sha256="1kx2yzaawagxd0vx29h74ik1zccasikr6qzks3m09hgmc6g4kf2p"; depends=[epiR MASS reshape]; }; generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; genetics = derive2 { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; }; @@ -6097,7 +6226,7 @@ in with self; { genpathmox = derive2 { name="genpathmox"; version="0.3"; sha256="0r1iqwm5jh93lbh87ks5qm4qqsp98928vg7qmv1pkahdlvl3ramw"; depends=[diagram mice plspm quantreg]; }; genridge = derive2 { name="genridge"; version="0.6-5"; sha256="0ms8n1yrga5qqg9ni41ifyw6320aajyrwvjh6d27q1k96j2dicp4"; depends=[car]; }; gensemble = derive2 { name="gensemble"; version="1.0"; sha256="0yyi7djzqx4yhxp6yy1rjgvzidjlna79ds89bgj6m6zj3aav6yw2"; depends=[]; }; - gensphere = derive2 { name="gensphere"; version="1.0"; sha256="184ky31l42k6x2di21hr2x1l35ksvr5yq8sr35mn642zckxx2y6g"; depends=[geometry mvmesh rgl SphericalCubature]; }; + gensphere = derive2 { name="gensphere"; version="1.1"; sha256="1xzli40fw94n89cv2qyb321csad1w9zidqc226wlifl2m44cw6f7"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; geo = derive2 { name="geo"; version="1.4-3"; sha256="0yxlafm99ypwf1700nh3hnnpndb6ghwwbi5sp6715zjbkkx94482"; depends=[mapdata maps]; }; geoBayes = derive2 { name="geoBayes"; version="0.3.3"; sha256="1jw0fj39gzf4cislc889ndgj34svcdxk0jz85ssk936g9gp0mm0c"; depends=[coda sp]; }; geoCount = derive2 { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp RcppArmadillo]; }; @@ -6111,12 +6240,13 @@ in with self; { geofd = derive2 { name="geofd"; version="1.0"; sha256="16312g9mgw52mpsfky1j20zcqkkv91ihl0xhvv1bl80diffzf0zi"; depends=[fda geoR]; }; geohash = derive2 { name="geohash"; version="0.3.0"; sha256="1yabnf0a6jd4r6zh83sxb9wcn4vs8csp7c80qs6pi1nx016lirx7"; depends=[Rcpp]; }; geojson = derive2 { name="geojson"; version="0.1.2"; sha256="0f8zimw50ryi776l5yxx5pi11559sa2278plvx289v3lfb20f7ii"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; - geojsonR = derive2 { name="geojsonR"; version="1.0.2"; sha256="1gx80rd1vg1j6vns24myybbi1k2c8q7z15jzsapasyw83ncjwy6w"; depends=[R6 Rcpp RcppArmadillo]; }; - geojsonio = derive2 { name="geojsonio"; version="0.4.0"; sha256="0y6bf0c0c05gal6j7m4kx7jcygrlwy99qzknqfglpbqkl5g6j7rq"; depends=[geojson httr jsonlite magrittr maptools readr rgdal rgeos sp V8]; }; + geojsonR = derive2 { name="geojsonR"; version="1.0.3"; sha256="102crv0yk28j71zlwaz4892fvvf040v533w4p3gq8kl71v35l5jd"; depends=[R6 Rcpp RcppArmadillo]; }; + geojsonio = derive2 { name="geojsonio"; version="0.4.2"; sha256="0lim5jgwnfaskmvhasb0wfk2bsa8zcwi2frxkyh0551c7ff4m9q7"; depends=[geojson httr jsonlite magrittr maptools readr rgdal rgeos sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; }; geoknife = derive2 { name="geoknife"; version="1.5.5"; sha256="0azb98zk4ayfm0z9vz5h59490xvng16p3gpdn60ca9mwdikyxks3"; depends=[curl httr sp XML]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geomedb = derive2 { name="geomedb"; version="0.1"; sha256="1kx6775ms9if8v4k7mm47l6dic6m3d1dlnw2dyqjlzmip4d70zfc"; depends=[adegenet httr]; }; + geomerge = derive2 { name="geomerge"; version="0.3.0"; sha256="12r60rxsi6x30q8h7mx0m50avvssm493qzyxiva7nglydcmhjn9r"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; geometa = derive2 { name="geometa"; version="0.1-0"; sha256="1p030v19851pp9x7d4rz51qpfr7vdk3zfihm4vx5yvn5r3ls3fr8"; depends=[R6 XML]; }; geometry = derive2 { name="geometry"; version="0.3-6"; sha256="0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"; depends=[magic]; }; geomnet = derive2 { name="geomnet"; version="0.2.0"; sha256="0xanzx8p34bac4zcf9j69nivwhllvsrw7x70mzgl95jhg3gvv96a"; depends=[dplyr ggplot2 network plotly readr sna tidyr]; }; @@ -6161,51 +6291,55 @@ in with self; { ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; + ggconf = derive2 { name="ggconf"; version="0.1"; sha256="1h7z4amlycfddisf8ix5kmax56ix8hdllfn77rf4fs5sbqsqxkdm"; depends=[ggplot2 rly tibble]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.1"; sha256="04jq1qpsgy8bgpilp1a02va4vz0adkjwrz9znmhv54q81qiv7h51"; depends=[ggplot2 reshape2]; }; ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; }; ggdmc = derive2 { name="ggdmc"; version="0.1.3.9"; sha256="07a9g6kwq4hg5zlcxndwmyprl3di7fzsn2960qyixn5bzrfk7sh2"; depends=[coda ggmcmc ggplot2 ggthemes gridExtra loo Rcpp RcppArmadillo rtdists]; }; gge = derive2 { name="gge"; version="1.2"; sha256="00kwm4xsr8796qm98b00rlznaicgn0aagkqn2h1qmdw70scifg8l"; depends=[Rcpp reshape2 rgl]; }; ggedit = derive2 { name="ggedit"; version="0.2.1"; sha256="0l2ryp8xcyqsgfcywr3y6c2y8j42c15dyrcmfhfimbzy52bmnqxy"; depends=[colourpicker dplyr ggplot2 miniUI plyr reshape2 rstudioapi scales shiny shinyAce shinyBS]; }; - ggeffects = derive2 { name="ggeffects"; version="0.2.1"; sha256="1630kganb2x9v4ihaz6vdzvi7pigjii1mmr56h5v7vgxzp7kkwxx"; depends=[dplyr effects ggplot2 magrittr Matrix prediction purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr]; }; + ggeffects = derive2 { name="ggeffects"; version="0.2.2"; sha256="0yxsb4309m5kxyidbrp0x2mv071figk1jksqlnqimybif0mygvpr"; depends=[dplyr effects ggplot2 magrittr prediction purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr]; }; ggenealogy = derive2 { name="ggenealogy"; version="0.3.0"; sha256="169zkcp13g0ll9941a7hh31fll0mavnkb6fd3kvkibdjm621ymyh"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; ggfittext = derive2 { name="ggfittext"; version="0.4.3"; sha256="0s1v8kpbjj1vvpdhkwcgjy93j9r2qcqn4nfxcca30n9gk5phsmp7"; depends=[ggplot2 stringi]; }; ggforce = derive2 { name="ggforce"; version="0.1.1"; sha256="0y49anv5sj1qn1ifcxg1krkkv4z3dlan5lya36vfmzzdamfgq5p6"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; - ggformula = derive2 { name="ggformula"; version="0.5"; sha256="14d8lilv688l2z9vdzkv2ngasink8x0pc2ssq22hny03v1il794g"; depends=[ggplot2 glue magrittr mosaicCore rlang stringr tibble tidyr]; }; + ggformula = derive2 { name="ggformula"; version="0.6"; sha256="0ibzp6m9i87kqi3xjjkgc4lvbhhcvw0j90axr1v8khj2zaxsbwnx"; depends=[ggplot2 magrittr mosaicCore rlang stringr tibble]; }; ggfortify = derive2 { name="ggfortify"; version="0.4.1"; sha256="19jwcz1z6g7l65l6cj8zspypfb86pn3x18vzdcgf932n14g646d2"; depends=[dplyr ggplot2 gridExtra scales tibble tidyr]; }; + gggenes = derive2 { name="gggenes"; version="0.2.0"; sha256="1s3lkdl9wmhcdra90bv8zzb16h2sdmpr15x8c3d0gfw7yir6prj2"; depends=[ggplot2]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; ggimage = derive2 { name="ggimage"; version="0.0.4"; sha256="1r9rl3sw5frncsq091924p5lk9z11inpvdk39byzabz2ybi6wzp8"; depends=[EBImage ggplot2 gridGraphics scales tibble]; }; - ggiraph = derive2 { name="ggiraph"; version="0.4.0"; sha256="1q69621928skb2kvms5i73a4rmha4nrgbhdq0bb7p150c7ni3lvi"; depends=[ggplot2 htmltools htmlwidgets plyr rvg uuid xml2]; }; + ggiraph = derive2 { name="ggiraph"; version="0.4.1"; sha256="1bda2p84dia2kgran40d45wag45kpbrq19vxd0j9p07n1s86014m"; depends=[ggplot2 htmltools htmlwidgets plyr rvg uuid xml2]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.1.0"; sha256="09fiwkaai4sy5kxy4p0c4ldb8ya63czff53hbm6d8fm858fw2byw"; depends=[ggiraph ggplot2 mapproj mgcv moonBook mycor plyr reshape2 scales XML]; }; - ggjoy = derive2 { name="ggjoy"; version="0.3.0"; sha256="15ycypm1imdg4cdg3qcgsj3chjwlaq84qr274r6wav6svrr52vdv"; depends=[ggplot2 plyr purrr scales]; }; - gglasso = derive2 { name="gglasso"; version="1.3"; sha256="0qqp5zak4xsakhydn9cfhpb19n6yidgqj183il1v7yi90qjfyn66"; depends=[]; }; + ggjoy = derive2 { name="ggjoy"; version="0.4.0"; sha256="1s24zn7gmk52bvjjhanxby7rxbnc2yfl0nx5nv7x7z0zja8gg7nb"; depends=[ggplot2 ggridges]; }; + gglasso = derive2 { name="gglasso"; version="1.4"; sha256="0r4zfgkys8104iw1vzww3qid8a6dyn03x0jlgwrdvavfj86yhq54"; depends=[]; }; gglogo = derive2 { name="gglogo"; version="0.1.3"; sha256="1dq0bixz44p32kpma5wrqjqklal2ipjmqdwqap0xch542drlpqbn"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2]; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; }; ggm = derive2 { name="ggm"; version="2.3"; sha256="1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3"; depends=[igraph]; }; ggmap = derive2 { name="ggmap"; version="2.6.1"; sha256="0mssb09w818jv58h7mly9y181pzv22sgcd4a079cfpq04bs0wigw"; depends=[digest geosphere ggplot2 jpeg mapproj plyr png proto reshape2 RgoogleMaps rjson scales]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.1"; sha256="09b89cnmdmiwy18igzxjiq60l1xqjh022fw3rhd5kx7lnh02yza3"; depends=[dplyr GGally ggplot2 tidyr]; }; ggmosaic = derive2 { name="ggmosaic"; version="0.1.2"; sha256="1mxa09914j9i8b14brl70a7j7ngycj8wkil3sqkd4jwplaszvhsn"; depends=[dplyr ggplot2 gridExtra NHANES plotly productplots purrr tidyr]; }; + ggmuller = derive2 { name="ggmuller"; version="0.2.2"; sha256="111ldv4h7hcc27lpxyxcm2nr0iks3dczfk3z9zd1y5pl9s7wlkp2"; depends=[ape dplyr ggplot2]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.1"; sha256="13qisn4msjzkpcmn7rh2c4ymqfxp9bayrvqngp9pysfmr6wvc6ia"; depends=[ggplot2 ggrepel network sna]; }; ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; ggplot2 = derive2 { name="ggplot2"; version="2.2.1"; sha256="0543782ddv2hp6s0l702mnxfg8n7a6qlbm8bm55x22hnqgz8kg2z"; depends=[digest gtable lazyeval MASS plyr reshape2 scales tibble]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.2.15"; sha256="00a909bdzkh28b7jkllxxqd1avcspny12y5rqpxddj90xv34zjah"; depends=[broom dplyr ggplot2 lubridate MASS plyr polynom splus2R tibble xts zoo]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.2.16"; sha256="1hq5zpc3zf4hq49ykrzrgj92cmh6gjsq6kpzcvzvnm5wyh9yy2iq"; depends=[broom dplyr ggplot2 lubridate MASS plyr polynom splus2R tibble xts zoo]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; ggpubr = derive2 { name="ggpubr"; version="0.1.5"; sha256="1ny0z5lc50hnsg21s7c5dyl4c79c34cqfkpi091dzs61w79m27jp"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif gridExtra magrittr purrr scales tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.0"; sha256="1nwf3cz1258khp1barxxp28326bagvlsfhg4rcccbxcpny9vbl7d"; depends=[data_table ggplot2]; }; ggquiver = derive2 { name="ggquiver"; version="0.1.0"; sha256="0p6li7cxjy54qrmaf9ja6aknnlxwq4sl0z1yip1mznb5rhv6lpxw"; depends=[dplyr ggplot2]; }; ggraph = derive2 { name="ggraph"; version="1.0.0"; sha256="0xkhqkckqz201601aqznrgnlgqzs7is1nfpdyalag58q5wl934j8"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; }; - ggraptR = derive2 { name="ggraptR"; version="0.1"; sha256="060ksjq790rvv9kyyf6v6z0irawlw3hxaq8n0dvzmfkw58pk5fpd"; depends=[dplyr DT futile_logger ggplot2 ggthemes shiny shinyBS shinyjs]; }; + ggraptR = derive2 { name="ggraptR"; version="1.0"; sha256="1n3ildrm8jh6m1j8njx1icbjhpkv3d2ndx59d6ddyg4np09cmp8w"; depends=[assertthat backports colorspace colourpicker DBI dplyr DT evaluate futile_logger futile_options gdtools GGally ggplot2 ggthemes gtable htmltools htmlwidgets httpuv labeling lambda_r lazyeval magrittr miniUI munsell plyr RColorBrewer Rcpp reshape rmarkdown rprojroot scales shiny shinyBS shinyjs stringi stringr svglite tibble xtable yaml]; }; ggrepel = derive2 { name="ggrepel"; version="0.6.5"; sha256="0lm78662p1iajkcvq82g08zsv3s4lfmkpggg1wk9wpvmk78yj2in"; depends=[ggplot2 Rcpp scales]; }; + ggridges = derive2 { name="ggridges"; version="0.4.1"; sha256="0kfa3icqdalqdg1klxjrhfl7if35d3wnsiyl86bprw5dyqyh3lh3"; depends=[ggplot2 plyr scales]; }; ggsci = derive2 { name="ggsci"; version="2.7"; sha256="15ay3dgdzaxxyspdai50i66r44v2qz3y2am3wkazg3afcs2qszk4"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.1"; sha256="1r23j701rvia49si42fbi6zws7x9r92h1bcp0a15h28hpl7zlp7l"; depends=[ggplot2 seasonal zoo]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggsignif = derive2 { name="ggsignif"; version="0.4.0"; sha256="1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.4.0"; sha256="0si3llqlb0dg482cqxhv5lm6raawqwpcd5ymjicw3780xq7d7mrk"; depends=[ggplot2 maptools png]; }; ggspatial = derive2 { name="ggspatial"; version="0.2.1"; sha256="11vminz4kwv1ny4v9h23sp7j7d45q6v4804xv9fp04qgzbzi9lv8"; depends=[abind ggplot2 maptools plyr raster reshape2 rgdal rosm scales sp]; }; - ggspectra = derive2 { name="ggspectra"; version="0.2.1"; sha256="1q8l5zfkv4jzacb8pp7b2yp99ack4by4z2iw9l4j2n689v9wjs40"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands reshape2 scales tidyr]; }; + ggspectra = derive2 { name="ggspectra"; version="0.2.2"; sha256="162hbi3nygxrazckmjc8nah2i49mwr0kddqrgvdzwqwn05ysdw53"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands reshape2 scales tidyr]; }; ggstance = derive2 { name="ggstance"; version="0.3"; sha256="0sr84nasr8x8ib3mdsjck73gbfg9xba50s5nxdij0ah9xqnpyhpi"; depends=[ggplot2 lazyeval plyr purrr]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="2.2.1"; sha256="05dszysn1qr5s4ji4il91pv19xjh5yd09w9f153fmg4cyfl716iz"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; @@ -6217,6 +6351,7 @@ in with self; { ghit = derive2 { name="ghit"; version="0.2.18"; sha256="117dn7j4nsdbdj1c1zndfikih3gxgxnkdxi3z0qmrbpsb9l4h1ic"; depends=[git2r]; }; ghyp = derive2 { name="ghyp"; version="1.5.7"; sha256="195hsskh2ykafqr93f675xqsmhbrki3abi61hk78bzy09n1d4jfk"; depends=[gplots numDeriv]; }; giRaph = derive2 { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; + gibble = derive2 { name="gibble"; version="0.0.1"; sha256="0cxxd02njjkd5z0n9qy5w1rdwhirjjbn2p4i9m9q68li9cwi4r2i"; depends=[dplyr tibble]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.7.4"; sha256="02z6r9p0vx22ja2bs6hqb9hjwlcnb8g0kcphqpj6ivkanwh6702w"; depends=[base64enc R_utils xml2]; }; gimme = derive2 { name="gimme"; version="0.2-2"; sha256="1fx6vh0zzrn2vqbaprv0iyihx4y93qshi82jgi9lrjhaaqw3dmfh"; depends=[gWidgets igraph lavaan qgraph]; }; @@ -6229,11 +6364,12 @@ in with self; { gitlabr = derive2 { name="gitlabr"; version="0.9"; sha256="0i9sqqvn9xzknybsj9nmi6kclw8c35shy658li17455d28gv4653"; depends=[base64enc dplyr httr magrittr purrr stringr tibble yaml]; }; gitter = derive2 { name="gitter"; version="1.1.1"; sha256="10m4rs6mhg7xn8dfd41ai0bnn5bnxn6cgqip22hrrpj0i2lzky6l"; depends=[EBImage ggplot2 jpeg logging PET tiff]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; - gjam = derive2 { name="gjam"; version="2.1.5"; sha256="11p84p0qp8m3r9pkp0wpzwm9q8rinvsg03zjx5d9zzpf7l0d8zz8"; depends=[MASS RANN Rcpp RcppArmadillo]; }; + gjam = derive2 { name="gjam"; version="2.1.6"; sha256="07xx71bk3wwpznmpi2pads6rcf6vx00i2cwyfn9zmg52282kdl4i"; depends=[MASS RANN Rcpp RcppArmadillo]; }; gk = derive2 { name="gk"; version="0.5.0"; sha256="0ixkl9jrmd4bcd3m34whfcikvwqbcdnzcd6gf5bdv81r0ygc5jml"; depends=[Ecdat lubridate progress]; }; gkmSVM = derive2 { name="gkmSVM"; version="0.71.0"; sha256="1zpxgxmf2nd5j5wn00ps6kfxr8wxh7d1swr1rr4spq7sj5z5z0k0"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges kernlab Rcpp ROCR rtracklayer S4Vectors seqinr]; }; glamlasso = derive2 { name="glamlasso"; version="2.0.1"; sha256="1x87nv29r309l539qccbcll4kn889sdds6gvrhyvw68rs370pn2l"; depends=[Rcpp RcppArmadillo]; }; glarma = derive2 { name="glarma"; version="1.5-0"; sha256="1afcccjayz6sj39mcg9h54d7dd1as8l63nxfw17bdh18zidr6ghi"; depends=[MASS]; }; + glassdoor = derive2 { name="glassdoor"; version="0.7.6"; sha256="0zgkz32vp71fyy25lx4kaa5gj5aj7glhxa0yqnawl1j1a4klj3v3"; depends=[httr xml2]; }; glasso = derive2 { name="glasso"; version="1.8"; sha256="0gcapw7kyxb19wvdyxq1vsmc5j7yyd0rvqxs2i71k31q352sg6zw"; depends=[]; }; glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; glcm = derive2 { name="glcm"; version="1.6.1"; sha256="0xzfhafc7326v3g1xngp584039iknw3q3bcx8f0j4ig125in7sxk"; depends=[Rcpp RcppArmadillo]; }; @@ -6256,12 +6392,12 @@ in with self; { glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; }; glmmML = derive2 { name="glmmML"; version="1.0.2"; sha256="0ndvp7a7dxq6ygdwzq783ci1y0zb4xwnj6g4w1cm8zvqak8dxjdb"; depends=[]; }; glmmTMB = derive2 { name="glmmTMB"; version="0.1.1"; sha256="1ckij5jrqijwljqkj624q6li0bv8vxb3aglwbfi034zc0iwiba1b"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; - glmmsr = derive2 { name="glmmsr"; version="0.1.1"; sha256="07z4j7845hz3hcv438njnqf1yfp8prqby03h3s1ql1w8d342670i"; depends=[BH lme4 Matrix R6 Rcpp RcppEigen]; }; - glmnet = derive2 { name="glmnet"; version="2.0-10"; sha256="07n2hz4fvjyv0siai8z8wqwfj8d58i8n1vzf1ckdfzp4kxa3z08d"; depends=[foreach Matrix]; }; + glmmsr = derive2 { name="glmmsr"; version="0.2.0"; sha256="1p9k8iiv3n3jvp20lfbrrfnml809kndfwbw8vilb4dhx9bqds3c9"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; + glmnet = derive2 { name="glmnet"; version="2.0-13"; sha256="1zdqp6wnqxzp5qn2ky47phbkrxv3cpgbwmdp896h3xxjvp58sa7k"; depends=[foreach Matrix]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1"; sha256="0abvxkwfadh56672qh16vql49js9ar8cz8is0bs6i8jgsl5csz91"; depends=[glmnet Matrix]; }; - glmnetcr = derive2 { name="glmnetcr"; version="1.0.2"; sha256="1pyg23hdqksiaqdcrsaqz9vb7mgclm41hh0vb7ndkdv284bzzlbz"; depends=[glmnet]; }; + glmnetcr = derive2 { name="glmnetcr"; version="1.0.3"; sha256="0w04m0q7w5xxm0yv14f2g1ykpy54pxzdplr0xcz9mn43wi4sl65a"; depends=[glmnet]; }; glmpath = derive2 { name="glmpath"; version="0.97"; sha256="054v188ffjl6x11cld5s9py22kxcs0iq58x4yhxb0ny7mbma5hkn"; depends=[survival]; }; - glmpathcr = derive2 { name="glmpathcr"; version="1.0.3"; sha256="0qa63c7kwpxf6smczgzf4fmvczw1ynqq5vgcw3bxdbs37q4ypj8n"; depends=[glmpath mvtnorm]; }; + glmpathcr = derive2 { name="glmpathcr"; version="1.0.4"; sha256="01jn8ryx6sp6qd0cx5m8n3dpkrb0665qw5ads9ai24g6ssl1y6bd"; depends=[glmpath]; }; glmulti = derive2 { name="glmulti"; version="1.0.7"; sha256="154s72sjp6pz7ki7s4mgn5v62j7h0lfz9mngf40wvmy31da2s8ix"; depends=[rJava]; }; glmvsd = derive2 { name="glmvsd"; version="1.4"; sha256="03axsn85axs4d6fdlr3wcdwq6qa4991svkqc7k9r52kk1ar0w5zz"; depends=[brglm glmnet MASS ncvreg]; }; glmx = derive2 { name="glmx"; version="0.1-1"; sha256="06v2qxgr16w0qnfhjr9vdqcad5v475pwg2yhw0i236yzqbnsssh6"; depends=[Formula lmtest MASS sandwich]; }; @@ -6276,6 +6412,7 @@ in with self; { glue = derive2 { name="glue"; version="1.1.1"; sha256="01awmqby7rwzhzr51m7d87wqibx7ggl6xair8fi3z3q1hkyyv7ih"; depends=[]; }; glycanr = derive2 { name="glycanr"; version="0.3.0"; sha256="1s3xhg31xc3x4gzxjpn9mbb7dw4m49na2mdlgr5wh1z9gxdc06pa"; depends=[coin dplyr ggplot2 tidyr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; + gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; }; gmailr = derive2 { name="gmailr"; version="0.7.1"; sha256="1gniwwl0ci0wm7a3ai2lqrr590smmkdgyf3aarw6bdygn8hr3s3y"; depends=[base64enc crayon httr jsonlite magrittr mime]; }; gmapsdistance = derive2 { name="gmapsdistance"; version="3.1"; sha256="1hsijd1ahsppmxpnx690s27lry1w3c8r9jynhj0rsr4w6jmxikc2"; depends=[RCurl XML]; }; gmatrix = derive2 { name="gmatrix"; version="0.3"; sha256="0ni5scx48m99jg9a5l93qvfkz6v5m7d5c0fwhp14mgiw32ff1s1r"; depends=[]; }; @@ -6285,7 +6422,7 @@ in with self; { gmnl = derive2 { name="gmnl"; version="1.1-3"; sha256="05p2kikv8zz9ldc6xi5bz7fyinpd0sp2v82hxhx6h54hfa6i7b9v"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.16.2"; sha256="0zf4krlvdywny5p5hnkr0r0hync6dvzc9yy4dfywaxmkpna8h0db"; depends=[gdata MASS]; }; gmp = derive2 { name="gmp"; version="0.5-13.1"; sha256="0xh9dli4i7hyjywsn2h780cxl3k7v0q421djyr1wshk7l9s5701g"; depends=[]; }; - gmt = derive2 { name="gmt"; version="2.0-0"; sha256="146rdvfi7f1s28zvy6h11myq61jy4di2ghzxlvwy04q3hphm1nj7"; depends=[coda Hmisc lattice]; }; + gmt = derive2 { name="gmt"; version="2.0-1"; sha256="1g1sj9gq3h3s0pdcfvzg7iifkns5azn3pa83if0d3yzc28cjf0yz"; depends=[]; }; gmum_r = derive2 { name="gmum.r"; version="0.2.1"; sha256="127h76nm99ldpaznys5y4rnrvq0kh5pcsjmw21hz79a8rjni7r16"; depends=[BH ggplot2 httr igraph Matrix Rcpp RcppArmadillo SparseM]; }; gnlm = derive2 { name="gnlm"; version="1.1.0"; sha256="0fv89cvbnp9n3lgg6y4sqmz9jzcgwj7vd92rwg7hixwrjyqpan4z"; depends=[rmutil]; }; gnm = derive2 { name="gnm"; version="1.0-8"; sha256="1581lzkb1v3y0arrq7x1bg7c91cii87bifxcdi1jzyc5rxj261la"; depends=[MASS Matrix nnet qvcalc relimp]; }; @@ -6307,9 +6444,11 @@ in with self; { googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.4.1"; sha256="0qd0r04yh1w58zgm9fyw1dsl6v7cmgrmmj9wpxanpdsjx8yvd3hk"; depends=[assertthat dplyr googleAuthR httr magrittr purrr tidyr]; }; googleAuthR = derive2 { name="googleAuthR"; version="0.5.1"; sha256="1ba8a4yc6l3ycamcqqq7mwqi9bw4y1xb29svww9gzha3yngy3740"; depends=[devtools formatR httr jsonlite miniUI R6 shiny testthat]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.3.0"; sha256="1r5sg2r94wxwvk7cg7vlv4gf2a2ccl31b069y370kjwlk26q7k4s"; depends=[assertthat googleAuthR httr jsonlite]; }; - googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.1.0"; sha256="173y7m2j6iw848djjawkiy22fg56hnpx0m0q1halzwycqx6z08vc"; depends=[future googleAuthR jsonlite]; }; + googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.2.0"; sha256="1kslsi7gc4na8pm8dyizswf9pfpdq1rprn08rd7kbxsisclbzc7y"; depends=[assertthat future googleAuthR httr jsonlite]; }; + googleLanguageR = derive2 { name="googleLanguageR"; version="0.1.0"; sha256="11z6sai3dha9j6v0v35v86nsdrv9w9xndnaal3fwdh45c07cr8a0"; depends=[assertthat base64enc googleAuthR jsonlite magrittr purrr tibble]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.15.7.28"; sha256="1bkfj88rn8ai0kbjbd0s3zih6iz018xybr13w2h9i6wdi3dhs75s"; depends=[XLConnect XML]; }; googleVis = derive2 { name="googleVis"; version="0.6.2"; sha256="1idnp9ndgg2dwybdpw7q3pkaw9kw2vy2xkls9qykrpz1p6nf3mn1"; depends=[jsonlite]; }; + googledrive = derive2 { name="googledrive"; version="0.1.1"; sha256="1fshv85s4ldw2kc7lbbdvrl260pz76z04awx1n6lg0f5xmba9rfg"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlesheets = derive2 { name="googlesheets"; version="0.2.2"; sha256="18q0xmxn09b52rmky7gr5flp0awndcnsgb7zcvkzvkrkvmwad52b"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tidyr xml2]; }; googleway = derive2 { name="googleway"; version="2.2.0"; sha256="11x8h5amczydh8d7wrqqwyk386k63kxhbbivb2gw1fi7ffyi24jb"; depends=[curl htmltools htmlwidgets jpeg jsonlite magrittr Rcpp shiny]; }; @@ -6333,18 +6472,20 @@ in with self; { grImport = derive2 { name="grImport"; version="0.9-0"; sha256="1d8fd7502qj7cirjqdkr1qj51rylw2fz5hs06avfvc2dxs2xwfw1"; depends=[XML]; }; gradDescent = derive2 { name="gradDescent"; version="2.0.1"; sha256="0kxyvr30hygg82s5m7nng02fvn6nak43y2v18445xbb05y6f5gmx"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; + gradientPickerD3 = derive2 { name="gradientPickerD3"; version="0.1.0.0"; sha256="0b20iqfipr7migwk1fl4lvdf4ghprqivcgmchfshhr8q82hyd1q0"; depends=[htmlwidgets jsonlite shiny]; }; gramEvol = derive2 { name="gramEvol"; version="2.1-3"; sha256="0z2511zhs2gcdkwp29n6fpafhn49h69yi56nmrhh9zc8jqj1rwpa"; depends=[]; }; granova = derive2 { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; }; granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; }; graphTweets = derive2 { name="graphTweets"; version="0.3.2"; sha256="13kab1nz85ghs5n882ss513di30b7lg72h676v37404ypj5a1vi1"; depends=[dplyr igraph reshape2]; }; - graphicalVAR = derive2 { name="graphicalVAR"; version="0.2"; sha256="0z1qjvyqlalplmwz898rhbjkj6fg1dsgpxn6828qmw3is36g74xg"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; + graphicalVAR = derive2 { name="graphicalVAR"; version="0.2.1"; sha256="1z4x32ji71rq1x89r3wmjhm1fq7klggpz6c1cf45fvcd9qs6ykhk"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; }; - graphkernels = derive2 { name="graphkernels"; version="1.2"; sha256="06lh4w0xw1apz70s9qzlhlayzh6nyd6v512lc90a0g7n6xw1fqvg"; depends=[igraph Rcpp RcppEigen]; }; - graphql = derive2 { name="graphql"; version="1.3"; sha256="14abyr4h49i75aq5x49f6jv6053hyq9a77v7wad88zcbcs3p1n9p"; depends=[jsonlite Rcpp]; }; + graphkernels = derive2 { name="graphkernels"; version="1.4"; sha256="1dwk1bd2nx9kdzxq31cgynd75r7am49ygkaryb6iqcmva1wc5xs0"; depends=[igraph Rcpp RcppEigen]; }; + graphon = derive2 { name="graphon"; version="0.1.1"; sha256="13ng0lxv0j40zwzgxh84mlxqfp1qff6v5dmvb6s9h9khj1vfxczs"; depends=[ROptSpace]; }; + graphql = derive2 { name="graphql"; version="1.4"; sha256="103vggx9273dg4fkrhik4p1vj8qh7gxavyh933qxhajpmhnfhksh"; depends=[jsonlite Rcpp]; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; }; graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; }; - grattan = derive2 { name="grattan"; version="1.5.1.1"; sha256="04m15v9c4kf5jfyr62l8xxcg7qyrbf17d5qf2h91cwrjq9w93lsx"; depends=[assertthat data_table dplyr forecast lazyeval lubridate magrittr purrr Rcpp rsdmx zoo]; }; + grattan = derive2 { name="grattan"; version="1.5.1.2"; sha256="0jpqm3m9nz5ml96s2w1kp99h65zxmfq49va8w1gvqq3iqrf5bdhj"; depends=[assertthat data_table dplyr forecast lazyeval lubridate magrittr purrr Rcpp rsdmx zoo]; }; gravity = derive2 { name="gravity"; version="0.3"; sha256="0makhi5hfs2x891ss6whq49rp73j6h5x5m4dvd0d175y06n4hg3s"; depends=[lmtest multiwayvcov sandwich]; }; grec = derive2 { name="grec"; version="1.1.1"; sha256="1qn1vbhlw42wqg9vj5plb12pg9xskn32z27ifyzm4kggp1vckgbf"; depends=[imagine raster]; }; greport = derive2 { name="greport"; version="0.7-1"; sha256="1h1g3khb30n3y8l1sxpas2s6s667az4yxvsq42x5dfx8fic42p6n"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; @@ -6354,7 +6495,7 @@ in with self; { grf = derive2 { name="grf"; version="0.9.3"; sha256="107w6mxn5irwxvx8ck6vv4l8ix10a6283grf3xs10ralmlc4y5kh"; depends=[Rcpp]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridDebug = derive2 { name="gridDebug"; version="0.5-0"; sha256="12zrl7p8p7071w5viymdipycja7a2arvy0aahgahd5nlx1k1gha0"; depends=[graph gridGraphviz gridSVG]; }; - gridExtra = derive2 { name="gridExtra"; version="2.2.1"; sha256="0638ihwl00j76ivaxxhxvi8z573lwy1jym3srr78mx6dbdd4bzj4"; depends=[gtable]; }; + gridExtra = derive2 { name="gridExtra"; version="2.3"; sha256="0fwfk3cdwxxim7nd55pn7m31bcaqj48y06j7an2k1v1pybk0rdl1"; depends=[gtable]; }; gridGraphics = derive2 { name="gridGraphics"; version="0.2"; sha256="1lxqr257gqyasln8j0538jyb9q0s6i72cxx8i6sya7w7dwgrv1xp"; depends=[]; }; gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; gridSVG = derive2 { name="gridSVG"; version="1.5-1"; sha256="13l7mn8kx36g74f39nq6c39d7l0zkkkgnmfmy5g8qnydw5qn5bkq"; depends=[jsonlite XML]; }; @@ -6375,7 +6516,7 @@ in with self; { growthcurver = derive2 { name="growthcurver"; version="0.2.1"; sha256="0q70g940ggpwnx2cpq2j8ambfbj9sqw6ivyp9cya1nbn05bah9ds"; depends=[caTools minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; - growthrates = derive2 { name="growthrates"; version="0.6.5"; sha256="1bnp51hlcb2gpm7j9llbnxjgimbrdsshjxl19ka9w1ba423v2ja2"; depends=[deSolve FME lattice]; }; + growthrates = derive2 { name="growthrates"; version="0.7.0"; sha256="0favz0v7q79m630xqsznyckvch1q3mrf19wj1if17l98bys7x9js"; depends=[deSolve FME lattice]; }; grpSLOPE = derive2 { name="grpSLOPE"; version="0.2.1"; sha256="1r9irf83f7szhkdqis2rakil8fsr3rqsfrj4dmbg3r3rnr8wl8nh"; depends=[SLOPE]; }; grplasso = derive2 { name="grplasso"; version="0.4-5"; sha256="15bqckq9qjdlllhfpb21vzgi9msbl544alkrz01w1vvb3hk1847y"; depends=[]; }; grppenalty = derive2 { name="grppenalty"; version="2.1-0"; sha256="12hbghmg96dwlscjy6nspgkmqqj4vwq2qcwcz1gp50a08qbmdcrk"; depends=[]; }; @@ -6427,7 +6568,7 @@ in with self; { gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyriq = derive2 { name="gyriq"; version="1.0.2"; sha256="12vbnhianzi4l43czaxrbnbkz1h8lvmwjys0y3c2ml3g6dmwwfji"; depends=[CompQuadForm irlba mvtnorm survival]; }; h2o = derive2 { name="h2o"; version="3.10.5.3"; sha256="0xk9aa87dch138k6zagcanqifs44shjv3da0yajrx4pgghl8xdmb"; depends=[jsonlite RCurl]; }; - h5 = derive2 { name="h5"; version="0.9.8"; sha256="1i7ymbqcmv8b9v8jdaqs49638m7xib5k92d62jh6h4il8l10rykx"; depends=[Rcpp]; }; + h5 = derive2 { name="h5"; version="0.9.9"; sha256="14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx"; depends=[Rcpp]; }; hBayesDM = derive2 { name="hBayesDM"; version="0.4.0"; sha256="0x7lpfx3d559fzkmrj3fb057zb3jm2y5l55zaqy0w7pnzgdpqnh6"; depends=[ggplot2 loo mail Rcpp rstan rstantools]; }; hIRT = derive2 { name="hIRT"; version="0.1.2"; sha256="0pqp6bycr13di1hbi5sqnkiannz2hyg0ysshswv2i9fp0vkhdhqf"; depends=[pryr rms]; }; hNMF = derive2 { name="hNMF"; version="0.3"; sha256="1kil1dkh8yqm5z2krc6n73hpm5m0h2dwwz4fg2xzvk5hsbg9qff3"; depends=[NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; @@ -6439,7 +6580,7 @@ in with self; { hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.1"; sha256="0cs90zxxbvglz1af0lh37dw1gxa04k0kawzxamz2was3dbh19lbz"; depends=[haplo_stats survival]; }; haplo_stats = derive2 { name="haplo.stats"; version="1.7.7"; sha256="1rag22sqy8r87w5a1dww5cxknacm6975bpp74vw9zr04ldx4c64k"; depends=[rms]; }; - haploR = derive2 { name="haploR"; version="1.6.0"; sha256="1wa3q1746j1y4jbb3zj36mk89pfrj1xpdjg7my35dm042h1hn9xb"; depends=[httr plyr RUnit tibble XML]; }; + haploR = derive2 { name="haploR"; version="1.6.1"; sha256="1w945n310q2pmywqh3jr39ab8k5p6na6d70mgksrmvqrf8h7x8ly"; depends=[httr plyr RUnit tibble XML]; }; haploReconstruct = derive2 { name="haploReconstruct"; version="0.1.2"; sha256="17zdl9c3yy6jdzv1wp0ailbga456pmmybzxh3dldymhj8qf32cx0"; depends=[data_table dbscan foreach gplots igraph matrixStats stringi zoo]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.0"; sha256="0pwihfi6g4jrnkha9s9rksq0fc8j04mlrwf0295rmy49y19rg84s"; depends=[network]; }; @@ -6466,7 +6607,7 @@ in with self; { hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; - hddplot = derive2 { name="hddplot"; version="0.57-2"; sha256="1mckgd99wvxbqvpyx231r97kysppnn1xggy8jvnc31sxq8m9gfr7"; depends=[MASS multtest]; }; + hddplot = derive2 { name="hddplot"; version="0.57-5"; sha256="01ljwb4glignq78gpm3n8ap8ws1ss7ibdy7ybdvhnm5zj6nnvjpp"; depends=[MASS multtest]; }; hddtools = derive2 { name="hddtools"; version="0.7"; sha256="0acvdysyyv5i109adh1prrc9ifwadb0gk303hh3b0g69wysnmhl8"; depends=[gdata Hmisc raster RCurl rgdal rnrfa sp stringr tibble XML zoo]; }; hdeco = derive2 { name="hdeco"; version="0.4.1"; sha256="04nggwckvn1kwi238qd33l4pryzn4aq5bmi30bvfi99gwnrlgfgq"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; }; @@ -6476,21 +6617,21 @@ in with self; { hdpca = derive2 { name="hdpca"; version="1.0.0"; sha256="1sv7caw4nhpcvsb7fxpvf2b5zskvfsv004hrqc51b5jx4fsc7y92"; depends=[boot lpSolve]; }; hdrcde = derive2 { name="hdrcde"; version="3.1"; sha256="027nxpzk1g0yx8rns7npdz30afs5hwpdqjiamc7yjrsi0rzm71lw"; depends=[ash KernSmooth ks locfit mvtnorm]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; - healthcareai = derive2 { name="healthcareai"; version="0.1.12"; sha256="1ipw5y7k0m33mnpqbcwdbqzhsh65fb10kym11wc4n2pfsml498w1"; depends=[caret data_table DBI doParallel e1071 grpreg lme4 odbc pROC R6 ranger ROCR RODBC RSQLite]; }; + healthcareai = derive2 { name="healthcareai"; version="1.0.0"; sha256="1pcibdg34s46628s6jzfn8vk8nhm17y6j8y8qpdp086pzc8nmfwx"; depends=[caret data_table DBI doParallel e1071 grpreg lme4 odbc pROC R6 ranger ROCR RSQLite xgboost]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; heatmap_plus = derive2 { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; }; heatmap3 = derive2 { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; }; heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; heatmaply = derive2 { name="heatmaply"; version="0.10.1"; sha256="0lanin04lzsf0fzy0ap055yw1bl26nnkd0d08y20fprkgz2ykh48"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis]; }; heavy = derive2 { name="heavy"; version="0.38.1"; sha256="12s4g0m5qi4yg26p9l3qay1gfhixma66ls0kf8lkaswzgd7761hp"; depends=[]; }; - heemod = derive2 { name="heemod"; version="0.9.1"; sha256="1ga1g9azhkbn716p0hrkm5k7ab9mnlc7w74rkd8qv4f05av0b4xv"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr tibble tidyr]; }; + heemod = derive2 { name="heemod"; version="0.9.2"; sha256="0qln5c4m11vxpsa0l07qrzs006b05hsl342pc5dgz0hwdpn5dd9j"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr tibble]; }; hei = derive2 { name="hei"; version="0.1.0"; sha256="1cvwdkm5c9p3cfgpgdj0r7222mzz1jghq2i5f20xh3786gx05sqd"; depends=[nhanesA]; }; heims = derive2 { name="heims"; version="0.2.4"; sha256="07w5qy0fn7f2lz6zq52fxa2zgjfddga4p3x3c7rmq83jilhasppl"; depends=[bit64 data_table dplyr fastmatch fst lubridate magrittr]; }; helixvis = derive2 { name="helixvis"; version="0.1.0"; sha256="1ycvgjbcghbdaw65v3b81pxf33226lr4cbk5l943jg7m738qsfhd"; depends=[rJava]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; }; - heplots = derive2 { name="heplots"; version="1.3-3"; sha256="0j644a0r4ycfg57p9ymlb3jb9bd797vwlw1ps24injsz71wbhnh0"; depends=[car MASS]; }; + heplots = derive2 { name="heplots"; version="1.3-4"; sha256="0qrx2qiy5w1hdy48ipa5is3k6dmz9gnfk5pckqpxp3hd0ip3217f"; depends=[car MASS]; }; here = derive2 { name="here"; version="0.1"; sha256="1vb5dxqdpimy51q1gjsypyq14p2hhvj7wsvh6g35pj1g03cyg9av"; depends=[rprojroot]; }; hergm = derive2 { name="hergm"; version="3.1-0"; sha256="17mxn2ff7yzj95vjsppvz7c9a5g6a2z9zyf34xvvxp9031zhrf46"; depends=[ergm latentnet mcgibbsit network sna]; }; heritability = derive2 { name="heritability"; version="1.2"; sha256="18snrfsjj5jw5qicj92d5qch9v4ciqw1hbiwg6q8kfjka9nmqpma"; depends=[MASS]; }; @@ -6547,7 +6688,7 @@ in with self; { hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; hmeasure = derive2 { name="hmeasure"; version="1.0"; sha256="0wr0xq956glmhvy4yis3qq7cfqv9x82ci9fzx3wjvaykd16h0sx9"; depends=[]; }; - hmi = derive2 { name="hmi"; version="0.7.4"; sha256="00wq099sb3mqhvfirfrr6lqz1dh6ld08s474ijnf24xxgfbyl6ls"; depends=[boot linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nnet pbivnorm tmvtnorm]; }; + hmi = derive2 { name="hmi"; version="0.7.8"; sha256="1wyjp1xmni18fq3v4n75qbmavvfidrqrvagd9kghg59jhc8jk988"; depends=[boot linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nnet pbivnorm tmvtnorm]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="0.2-4"; sha256="096flx2b9s66dasqj05zrkxsmg3lj6j5w0pwrw3b1qkpp9dvlrkb"; depends=[]; }; hmmm = derive2 { name="hmmm"; version="1.0-3"; sha256="0yjx5i13jbv7vzxn84m6305124ri7jnym0bxbdj46s6l7lw025a9"; depends=[MASS mvtnorm quadprog]; }; hms = derive2 { name="hms"; version="0.3"; sha256="127znf522r5mn3k6frhdd7pqh063bs3l85gn9h7cx50hpjf2as4k"; depends=[]; }; @@ -6555,7 +6696,7 @@ in with self; { hoa = derive2 { name="hoa"; version="2.1.4"; sha256="15klcpmja4afwmpfxrxgrfis0vj7fil8k15jc3p0lqz3dhvq0dvf"; depends=[statmod survival]; }; hoardeR = derive2 { name="hoardeR"; version="0.9.2"; sha256="0sss3ki2w0aqyp084pprycw8d8vgm60z41iq6g9nxhqhr9xy5kdw"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools httr IRanges MASS R_utils RCurl Rsamtools seqinr stringr XML]; }; hoardr = derive2 { name="hoardr"; version="0.2.0"; sha256="13bjycnr1v524c5wxigdd3kn8bx1sgwdqb10hbmbyjxffabacafr"; depends=[digest R6 rappdirs]; }; - holdem = derive2 { name="holdem"; version="1.1"; sha256="07h4cbg7hx91hc6ypi6hbalzdd9qz9rfhjgk5sq1srnangwwnxlw"; depends=[]; }; + holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; homals = derive2 { name="homals"; version="1.0-6"; sha256="1xfpb6mxfk18ad2fggljr2g01gy4c290axc3vgwngmmimmcvh4cy"; depends=[ape rgl scatterplot3d]; }; homeR = derive2 { name="homeR"; version="0.3.0"; sha256="0gi383392rs7snb2l9760vkws5hqfikyaj3i7cyby9g1sc2s6yx8"; depends=[]; }; hommel = derive2 { name="hommel"; version="1.1"; sha256="1vrfw3zxj6hlfr5czrhmx67bjbd94whfgdmsdzlmdpmj0w5r0naz"; depends=[Rcpp]; }; @@ -6582,6 +6723,7 @@ in with self; { hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; hsphase = derive2 { name="hsphase"; version="2.0.1"; sha256="1z7yxbknldxn780dxw9xz984b3i8pj5hmdnbynvxc5k0ss8g7isy"; depends=[Rcpp RcppArmadillo snowfall]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; + htm2txt = derive2 { name="htm2txt"; version="1.0.0"; sha256="1zq1rr7ary79pag13xhz51h509vqczvkvh42nhshv8ri5d3xqg9p"; depends=[gsubfn]; }; htmlTable = derive2 { name="htmlTable"; version="1.9"; sha256="0ciic1f4iczq14j81fg7kxibn65sy8z1zxkvk1yxnxxg6dzplj2v"; depends=[checkmate htmlwidgets knitr magrittr stringr]; }; htmltab = derive2 { name="htmltab"; version="0.7.1"; sha256="0lymagm7z6zn0ddygqxi831ikk74112lkqkbvs5j1djhmr359ajc"; depends=[httr XML]; }; htmltidy = derive2 { name="htmltidy"; version="0.3.1"; sha256="004a2wwsnx3mnm6v1mjlaq08gcgm60xahh520vfyrsp56b7j29ky"; depends=[htmltools htmlwidgets Rcpp XML xml2]; }; @@ -6591,7 +6733,7 @@ in with self; { hts = derive2 { name="hts"; version="5.1.4"; sha256="0n1gna2694yih5kaiw59crdlfcdfm9dqhjpkcwaskgrpmh08wnkd"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; }; httk = derive2 { name="httk"; version="1.7"; sha256="1l29wpb03l7lk7y4lzjpxksr96jymg4sdvh7amd6068kdch0lqqp"; depends=[data_table deSolve msm mvtnorm survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; - httpcache = derive2 { name="httpcache"; version="1.0.0"; sha256="0p0c2n1n5nrmnii9myp9blzwg996xgm15law9f073an4xvfg2kd2"; depends=[digest httr jsonlite]; }; + httpcache = derive2 { name="httpcache"; version="1.0.2"; sha256="0bggfsxf42mdx2zj6ipqd7a328j7py0ldc31452f6lccc7xryp46"; depends=[digest httr jsonlite]; }; httpcode = derive2 { name="httpcode"; version="0.2.0"; sha256="06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"; depends=[]; }; httping = derive2 { name="httping"; version="0.1.0"; sha256="1bhy5mh0hz83rjmvh7wl211nqkz58gxsgkwlkmjrdfzc2cparxjz"; depends=[httpcode httr jsonlite magrittr pryr]; }; httptest = derive2 { name="httptest"; version="2.1.2"; sha256="1145aca2bkqk39xp6m2vc8plh3xcgcdi5dwp1c30yifbqa3szamh"; depends=[digest httr jsonlite testthat]; }; @@ -6605,8 +6747,8 @@ in with self; { hunspell = derive2 { name="hunspell"; version="2.6"; sha256="02z7d3s9mc2gg6ha9hwvpnxrx9vjpppjpggg8cgj88c09y943fkq"; depends=[digest Rcpp]; }; hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; }; hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; }; - hutils = derive2 { name="hutils"; version="0.1.2"; sha256="12hh69y0hvvbyw0p1z6r4kkbhp82vk8p5afcaq7g4y7liayfmdyh"; depends=[data_table fastmatch magrittr]; }; - huxtable = derive2 { name="huxtable"; version="0.3.0"; sha256="1h74n8vkza0n6mfzliadm2dhjy154lzjp2n917r26rra4xwjknrx"; depends=[crayon dplyr htmltools knitr lazyeval rmarkdown tibble xtable]; }; + hutils = derive2 { name="hutils"; version="0.8.0"; sha256="12ql3iaxksfy1vkdxbx5jrn4sjh4l00l9xyi4kq4h6vyag4f0fzf"; depends=[data_table fastmatch magrittr]; }; + huxtable = derive2 { name="huxtable"; version="0.3.1"; sha256="1nfkzdqgj6n81m68n0cc8rvm11wyc1bs74kzanrr39varjfq2xjz"; depends=[crayon dplyr htmltools knitr lazyeval rmarkdown tibble xtable]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; hwwntest = derive2 { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; @@ -6641,7 +6783,7 @@ in with self; { iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.0.1"; sha256="1x1kgxiib9l7whm2kmbv1s912hgpl7rdpqpn67nlkiswnr27hqn4"; depends=[]; }; iClick = derive2 { name="iClick"; version="1.2"; sha256="04d82wbddvj73cw6ys492nasvxcj8m5594zf9r41y72i5yha11pa"; depends=[fBasics forecast lattice lubridate openair rugarch timeDate timeSeries]; }; iCluster = derive2 { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; }; - iDINGO = derive2 { name="iDINGO"; version="1.0.0"; sha256="1773rsjcjcmm5hc3qx2hnwq9ifvjdc5dcgrzibkd6l55ki049njp"; depends=[GGMridge glasso igraph mvtnorm scales visNetwork]; }; + iDINGO = derive2 { name="iDINGO"; version="1.0.1"; sha256="1ias99v9a4rb3w19cjp20mk0r3kq22kpcjq92yykmjhmklp55i20"; depends=[GGMridge glasso igraph mvtnorm scales visNetwork]; }; iDOS = derive2 { name="iDOS"; version="1.0.0"; sha256="1jj98ikzvfp6qbnh2j6msi0m89sbmjjafgry43rq7qmczzs81hl8"; depends=[VennDiagram]; }; iDynoR = derive2 { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[vegan XML]; }; iECAT = derive2 { name="iECAT"; version="0.8"; sha256="0kv8db7ss3vk21ccl8qfj4x69npfzwmm3piddj9l0vwrwd3ccl32"; depends=[MetaSKAT SKAT]; }; @@ -6650,7 +6792,7 @@ in with self; { iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iJRF = derive2 { name="iJRF"; version="1.1-4"; sha256="1fgbc0z647vwybffzp4iips86pxakd25dlk5jqgm049s6pa8m73v"; depends=[ggplot2]; }; iLaplace = derive2 { name="iLaplace"; version="1.1.0"; sha256="1z752yw3nvqj1ckf23262phkw849cb5p4m14v108xf2dizyzggxg"; depends=[doParallel fastGHQuad foreach iterators Rcpp RcppArmadillo]; }; - iMediate = derive2 { name="iMediate"; version="0.3"; sha256="1w4bcy54k2dqgckcjnk9bi253cjij4rl603m4jw6x8ixpahgkcr1"; depends=[mediation]; }; + iMediate = derive2 { name="iMediate"; version="0.4"; sha256="0pwvzd0k9m2jd7sizl436vs63rg9yinisrb0flz34yj5avn6rmb0"; depends=[mediation mvtnorm plotly]; }; iMessager = derive2 { name="iMessager"; version="1.0"; sha256="1w0l2qpcgglg13bnqdnz8xnfq2mxkk5g6cblvf2v5y03c2gpmm86"; depends=[]; }; iNEXT = derive2 { name="iNEXT"; version="2.0.12"; sha256="1041r5k0k3kzik5vwyd62s4yc85lnnxbg5gbbl0kl629kikymb6y"; depends=[ggplot2 reshape2]; }; iNOTE = derive2 { name="iNOTE"; version="1.0"; sha256="1969xmgfv9405r09zpd2icvjd9vvzw4dx5qaqxk1a0jvbvhp3h88"; depends=[CompQuadForm mixtools plyr]; }; @@ -6684,7 +6826,7 @@ in with self; { icd = derive2 { name="icd"; version="2.2"; sha256="0yf7xyzwvgfcbccsz89nywkrfg9hp8m2l7pn28kwxn5k0jnm1cmw"; depends=[checkmate magrittr Rcpp testthat]; }; icd9 = derive2 { name="icd9"; version="1.3.1"; sha256="0yrgg1vf9jf0kv4qbvc0d8n26csxx79g2196ijgq43rhprrrm1y6"; depends=[checkmate fastmatch Rcpp]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; - icenReg = derive2 { name="icenReg"; version="2.0.2"; sha256="1k287mn1xf99vj5am96zvhl5if6qkm23rdnmcc924dw04lrdicc3"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; + icenReg = derive2 { name="icenReg"; version="2.0.3"; sha256="1g0jzbw23dmh54ksxnjr8a1i5b9hfivczk5il017w3i8bdadpx65"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; }; icesAdvice = derive2 { name="icesAdvice"; version="1.3-1"; sha256="1afkb5f48f03l9hcjv7xgm6nindk4gn6f38k51pf31a7rxg0114x"; depends=[]; }; icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; }; @@ -6699,7 +6841,7 @@ in with self; { idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; idbr = derive2 { name="idbr"; version="0.2"; sha256="1hhwn93arkzqs5ns9ll7rwqq5gyngixbicly9asw0dgjn12n5p7x"; depends=[countrycode dplyr httr jsonlite]; }; idefix = derive2 { name="idefix"; version="0.1.2"; sha256="00whk6w8mfh8z7l4lhb7c26yniq9a59ja1qfiy6dsxfdcbwdbcnd"; depends=[dplyr gtools MASS maxLik Rdpack scales]; }; - idem = derive2 { name="idem"; version="2.2"; sha256="1kgz5126qm6iqx4w2msfw8nmh4ym9jjkxg16m6z5i1lg3vrpzjkj"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders survival]; }; + idem = derive2 { name="idem"; version="3.0"; sha256="15k6gk3v2hijdfabc1c2xabm5v84hgs0p9lpddrpir3h5jzilr3i"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders survival]; }; idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; ider = derive2 { name="ider"; version="0.1.0"; sha256="021s4fybki7a6mdsr6gkjrzfhaqdcg0m2a6r24y91jklxlxqxmws"; depends=[FNN]; }; @@ -6736,6 +6878,7 @@ in with self; { imp4p = derive2 { name="imp4p"; version="0.4"; sha256="1g5q6y8xxk9176172yvryfg6y33jnhvqicps8p7kljwq8k099dxn"; depends=[imputeLCMD Iso Rcpp truncnorm]; }; implyr = derive2 { name="implyr"; version="0.2.1"; sha256="0f9raar2amkbgk7hr7zdzwls3nlkrml73vdzjz2ycmfi521gsp9y"; depends=[assertthat DBI dbplyr dplyr rlang]; }; r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; + importar = derive2 { name="importar"; version="0.1.0"; sha256="188ad139fa6plla1rraqwi8dvi4xfknm92nb72z21ahdpkdp80i3"; depends=[]; }; imprProbEst = derive2 { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; }; imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; }; @@ -6760,7 +6903,7 @@ in with self; { inegiR = derive2 { name="inegiR"; version="1.2.0"; sha256="14mpjyc85l9sznhn29cxk37l3y5yxclqiv2kgcwf8prpxfgwy83l"; depends=[jsonlite plyr XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; - inferference = derive2 { name="inferference"; version="0.4.62"; sha256="12iag6l2digxb056qc765xi27ayc4qyqdqzbhxscr8a5lxfkdn4p"; depends=[Formula lme4 numDeriv]; }; + inferference = derive2 { name="inferference"; version="0.5.4"; sha256="1i164dh82q3k9ql0hgrbflzyc15zdcn2b324mjz84pfhbp2qp4hn"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.1.1"; sha256="148n1dwfjzzcahsqy9s3wlgpf9p6jpcn692j7dvyaw6rdk3bq1i3"; depends=[dplyr magrittr purrr Rcpp tibble tidyr]; }; inflection = derive2 { name="inflection"; version="1.3"; sha256="168ms6hfakr6wql45r9qvk7hpas6sgpaiqyxicihsq0j3dpzvys4"; depends=[]; }; influence_ME = derive2 { name="influence.ME"; version="0.9-9"; sha256="0f6d2hvs9qllyfpsp2cgh7w8yjxafclbk47n8av7j9zpp7s5yg9v"; depends=[lattice lme4 Matrix]; }; @@ -6791,6 +6934,7 @@ in with self; { intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; intamap = derive2 { name="intamap"; version="1.4-1"; sha256="1shyxlps1rxqavrvg55gw0c9115q0j3yw78ilavig7036zx5lazv"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-10"; sha256="073k6sdds40fmlbw1xnp3x5sc9qdyq2s1bhp7av4jjm930hsvsrn"; depends=[automap gstat intamap spatstat spcosa]; }; + intccr = derive2 { name="intccr"; version="0.2.0"; sha256="0sm66c0ivvky01k5v28k7rc6ba15jpnalhgc019nbrly1s5kyqcy"; depends=[alabama doParallel foreach]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.5"; sha256="13p1r3rccsmaqwn0mrskr86jpww72aaq8zf2a8rnbpzkfrq9ni14"; depends=[abind doParallel foreach ltm MASS mclust]; }; interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; interactionTest = derive2 { name="interactionTest"; version="1.0.1"; sha256="021qsg9rglc4vj3hkrvfm2snd77zna7ql2i0m5hf77yzxxc35jc6"; depends=[]; }; @@ -6829,7 +6973,7 @@ in with self; { ipdw = derive2 { name="ipdw"; version="0.2-6"; sha256="1jfixvywxdhnpqz62ld2c8n6yacg88q3y1n1aisqqb7szz0zf23z"; depends=[gdistance raster sp]; }; ipflasso = derive2 { name="ipflasso"; version="0.1"; sha256="12cyn7wpkrjqrjccb26mi375ijqplps4216ldj7w3az9g8pzihv3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; - ipft = derive2 { name="ipft"; version="0.6"; sha256="0xp9ab801yavxq8pvcabx1grhq2hrhnx6lvkv9k02qvyrgp3jkwp"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; + ipft = derive2 { name="ipft"; version="0.7.1"; sha256="1vprm3dlfh5bqn3hk5sdx2d8qdagn1a3crg8s9w1jykp7ivnahac"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; iplots = derive2 { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[png rJava]; }; ipred = derive2 { name="ipred"; version="0.9-6"; sha256="1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.6.5"; sha256="11zb8vs8pv5cbdvfd4s70l2ars3f78lasrvp691s5hvkv882lq51"; depends=[RColorBrewer Rcpp RcppEigen]; }; @@ -6852,6 +6996,7 @@ in with self; { isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; island = derive2 { name="island"; version="0.1.3"; sha256="1wb44zyfkgk62aidw5qg660473dxh9nyahmxzxn7ffmi8a0hmdnf"; depends=[]; }; ismev = derive2 { name="ismev"; version="1.41"; sha256="19vmjgz1baqkryi34ffhjznc46z3zwqaqblwafhk9fd50xgn4bi6"; depends=[mgcv]; }; + isnullptr = derive2 { name="isnullptr"; version="1.0.0"; sha256="11pkkvbnbjcpx4nzas2cksmwz6naf6w9d6djk8b34yhnxlvhg09z"; depends=[]; }; isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; @@ -6866,11 +7011,11 @@ in with self; { iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; iterLap = derive2 { name="iterLap"; version="1.1-3"; sha256="079d4hxf1ha8pgibzb4r1yk7xqpzndd7hjbp8294qb26jvvcnd8q"; depends=[quadprog randtoolbox]; }; iterators = derive2 { name="iterators"; version="1.0.8"; sha256="1f057pabs7ss9h1n244can26qsi5n2k3salrdk0b0vkphlrs4kmf"; depends=[]; }; - iterpc = derive2 { name="iterpc"; version="0.3.0"; sha256="1l1qsjmqwabbmrvl4rx50fynn1p62f0g48hkx71p3gv9asr4zifz"; depends=[gmp iterators Rcpp]; }; + iterpc = derive2 { name="iterpc"; version="0.3.3"; sha256="1dqckb3raq5d6fy0h4ikg2xk61pin1hd4cdvpbngzgjzn6b5q1f6"; depends=[gmp iterators Rcpp]; }; itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itree = derive2 { name="itree"; version="0.1"; sha256="164zgr142hcp9plnbccs6m823p4m0prk73bvp54bc7bqnqmc3d9a"; depends=[]; }; - itsadug = derive2 { name="itsadug"; version="2.2"; sha256="01a80a6vni3g4xph3p8i0jrlqgqhdyswhv7w6vbxhbmawbzffxyx"; depends=[mgcv plotfunctions]; }; + itsadug = derive2 { name="itsadug"; version="2.3"; sha256="0wzdy82h05264n9cr84w5j98vz24was9hh1y0wdp56ws3dfbav9m"; depends=[mgcv plotfunctions]; }; itsmr = derive2 { name="itsmr"; version="1.5"; sha256="0l9m5is6d6pkpfkihx0jir5iv8zmqqav8vh9bkkpqv5iz61p4kxb"; depends=[]; }; itunesr = derive2 { name="itunesr"; version="0.1"; sha256="0vfn3vvbfl0ckgr50449xffj8726wsa120ibppbzhalp8rb6hq4a"; depends=[curl jsonlite lubridate xml2]; }; ivbma = derive2 { name="ivbma"; version="1.05"; sha256="0d7kg6pkdx1aj1i6kqs2r7j1klxxwymml63qnrq6a6fia3ck9kk9"; depends=[]; }; @@ -6884,12 +7029,13 @@ in with self; { jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; }; jaatha = derive2 { name="jaatha"; version="3.2.0"; sha256="00886j0cabrq6a69w8s1gsfkmx1wqs1vpxjafpm71msk54r0dj55"; depends=[assertthat R6]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; - jackstraw = derive2 { name="jackstraw"; version="1.1"; sha256="0p79b8vgjspi3hjqqrhrfvf0k9rzg7ycn7azax3pk28j2cvi30j2"; depends=[corpcor lfa]; }; + jackstraw = derive2 { name="jackstraw"; version="1.1.1"; sha256="18iah8sq64p7c6rxs21w8rbxvbmbh03jzqbam1ilp46ayfqzk9qc"; depends=[corpcor lfa]; }; jacpop = derive2 { name="jacpop"; version="0.5"; sha256="056c82d4a10rgq0p4p63y9i94dy1kqp3yh7xms9nx9q2xb940xb5"; depends=[]; }; jagsUI = derive2 { name="jagsUI"; version="1.4.4"; sha256="0jfziaxxrlf1izp7s61d7xckdx33hnbq1cs2zlp7c9bcpp4mdkzv"; depends=[coda lattice rjags]; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; }; janeaustenr = derive2 { name="janeaustenr"; version="0.1.5"; sha256="1wyn4qc28a3sval8shmyi2d7s4nl3jh96s8pzq871brxcmrncbwr"; depends=[]; }; janitor = derive2 { name="janitor"; version="0.3.0"; sha256="1x2598yv6r2z4q13vbzsqns6d4q0bki97sqsm67pp77djpw8wkay"; depends=[dplyr magrittr tidyr]; }; + jaod = derive2 { name="jaod"; version="0.1.0"; sha256="0wh1nlfhks4c1dga6h7554pg44pamj73x5in71k2xw0yp292zm6x"; depends=[crul jsonlite tibble]; }; jcolors = derive2 { name="jcolors"; version="0.0.1"; sha256="0a5p8778s14rk7xsivmb0g0c4kzdvbhyxsl8v1lk3cpq6898zv2d"; depends=[ggplot2 scales]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jiebaR = derive2 { name="jiebaR"; version="0.9.1"; sha256="1qv4k5fgi40ppivdk3mxkhawyf2443h2lz5b9gvai9sqj6vf0s8k"; depends=[jiebaRD Rcpp]; }; @@ -6898,14 +7044,14 @@ in with self; { jmetrik = derive2 { name="jmetrik"; version="1.0"; sha256="0xnbvby03fqbxgg0i0qxrrzjv98783n6d7c1fywj81x487qlj77j"; depends=[]; }; jmotif = derive2 { name="jmotif"; version="1.0.2.900"; sha256="0zgj1g8vy2cj2kyschbr1xb1mb862gniva0sa8qr9p8vvb03ja4v"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="1.3"; sha256="1lzqpdy2987szihsjaq6l1iggjhji0li4cj7914myj3vzfcif8gw"; depends=[]; }; - jmv = derive2 { name="jmv"; version="0.7.5.6"; sha256="0kkjschr24635nar2jwaq14nvavjcpj5sbikdb2bhs5b983ij98y"; depends=[afex BayesFactor car GGally ggplot2 GPArotation jmvcore lavaan lsmeans multcomp mvnormtest PMCMR psych R6 vcd vcdExtra]; }; - jmvcore = derive2 { name="jmvcore"; version="0.7.1"; sha256="1dfr5kgylax8m8hx3cbifiq32dcrj6dawbzacanvb50rcfizn6n4"; depends=[base64enc R6 rjson]; }; + jmv = derive2 { name="jmv"; version="0.8"; sha256="0zxq16yn3hn4hnlm7914pz1zdypppa25vdbv11qvp77mhprpvj4f"; depends=[afex BayesFactor car GGally ggplot2 ggridges GPArotation jmvcore lavaan lsmeans multcomp mvnormtest PMCMR psych R6 vcd vcdExtra]; }; + jmvcore = derive2 { name="jmvcore"; version="0.8"; sha256="1ii0prwnxaxk32wnyzi6gm89s4v4sh2xwj3ipwb3m8yzf1g8a8kr"; depends=[base64enc R6 rjson]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; - joineR = derive2 { name="joineR"; version="1.2.1"; sha256="05q8wky14j36c09qn9sgrp90wswj9x2s438vfaqf4m1znpgv4h3g"; depends=[lattice MASS nlme statmod survival]; }; + joineR = derive2 { name="joineR"; version="1.2.2"; sha256="0xx89ykympdff8a5zz58syj771kbpzrq393hw5z1rgjswzlyi8r9"; depends=[lattice MASS nlme statmod survival]; }; joineRML = derive2 { name="joineRML"; version="0.3.0"; sha256="04v6nqrq4yw3i5xgc4rsqfyb1a4q7iyhlsyq7mhpwydzxxg7nwdg"; depends=[ggplot2 lme4 MASS Matrix mvtnorm nlme Rcpp RcppArmadillo survival]; }; - joint_Cox = derive2 { name="joint.Cox"; version="2.12"; sha256="1g79afhrs6xf4rk2h00v11pw6r9539ds7qhsy5vra4sa79qqfa1g"; depends=[survival]; }; - jointDiag = derive2 { name="jointDiag"; version="0.2"; sha256="0y1gzrc79vahfhn4jrj5xys8pmkzxj4by7361730gi347f0frs0a"; depends=[]; }; + joint_Cox = derive2 { name="joint.Cox"; version="2.13"; sha256="061qfx4n3s1nfp77rar25762x79wjr3g39l5d3yvia1csjcm6xyy"; depends=[survival]; }; + jointDiag = derive2 { name="jointDiag"; version="0.3"; sha256="0pra70jcnkqkzrxz5vc6lzi637rp5w8n9wbv9ix718vnd0j3fm3n"; depends=[]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; jomo = derive2 { name="jomo"; version="2.4-1"; sha256="0hjpvxm8zbvbnhjhk959fd3wrx4igqgzlxphv1hcc2iyz2975fl8"; depends=[lme4]; }; @@ -6921,14 +7067,14 @@ in with self; { jsonlite = derive2 { name="jsonlite"; version="1.5"; sha256="00lfg464jhf7k01bal9pcjvbdf5cxk6xi2h46hccp1x3h883g434"; depends=[]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; }; jtGWAS = derive2 { name="jtGWAS"; version="1.5.1"; sha256="06cgsncgrqslxcc7s0lb3zwa85bhzkmjzz3f04716xpzwa186vxq"; depends=[Rcpp]; }; - jtools = derive2 { name="jtools"; version="0.5.0"; sha256="04v2nw3k3k82vrs7n90njkjjmblqjr59kyhnq7arnmy308cb453v"; depends=[]; }; + jtools = derive2 { name="jtools"; version="0.7.1"; sha256="1hnbf13ymskpcal5d0zv6d4h5wv5ld8w63s4m2sf7j0573v7pbvs"; depends=[boot]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; jug = derive2 { name="jug"; version="0.1.7"; sha256="01m6hyr26f6zih49pz2bmmr8ypdl1qiz0wv3padcy68kaccf44a4"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; junr = derive2 { name="junr"; version="0.1.2"; sha256="1b1x0fma51wapchia49351wig57fgwc5sw7xsm8rb1g30k294rkz"; depends=[httr jsonlite]; }; jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; jwutil = derive2 { name="jwutil"; version="1.1.1"; sha256="114vph86722v89iwyla7skl06cv87ymfy6nmca5iyxwx1z78zddz"; depends=[checkmate Rcpp]; }; kSamples = derive2 { name="kSamples"; version="1.2-7"; sha256="0f19rjngk0lg6s8c6h5l55qpxp8sl4vxj3kpi05cizzncny9b9bj"; depends=[SuppDists]; }; - kableExtra = derive2 { name="kableExtra"; version="0.4.0"; sha256="01zp3q78rs7nwmh6xdzjyk108b4bmdn531rpgiim0rvvci6gyj46"; depends=[knitr magrittr readr rmarkdown rvest stringr xml2]; }; + kableExtra = derive2 { name="kableExtra"; version="0.5.2"; sha256="10lsvn8z2pqsg40a58h9la6g1189v85wr15ps2i8rcd4czrdp53j"; depends=[knitr magrittr readr rmarkdown rvest stringr xml2]; }; kamila = derive2 { name="kamila"; version="0.1.1.1"; sha256="06jl868i8a6zg3pyaf1r6ccd33ya5f83apc5w6d3m111dzdqqlcy"; depends=[abind gtools KernSmooth mclust plyr Rcpp]; }; kangar00 = derive2 { name="kangar00"; version="1.1"; sha256="1rm3mjghgfq8fliha6flqvcb6m4xag1697c0q5smg515453l0s0p"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; kantorovich = derive2 { name="kantorovich"; version="2.0.0"; sha256="0y965nkhgk0z2q2j3sycfg76aqqi3ry8avg0bz9xggpd60bhh5vd"; depends=[gmp lpSolve rcdd Rglpk]; }; @@ -6947,19 +7093,20 @@ in with self; { kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; kelvin = derive2 { name="kelvin"; version="2.0-0"; sha256="04xdgpmysksm79m3vqmb4zra3pq09nv99w4fbdla1lmy7z8pkdrk"; depends=[Bessel]; }; kequate = derive2 { name="kequate"; version="1.6.1"; sha256="1rjya1rnlfk2ziiwhkgshlyk3g0388591q3q01a3vgmgsb3cpxl6"; depends=[equateIRT ltm mirt]; }; - keras = derive2 { name="keras"; version="2.0.5"; sha256="12f7b1fyaj8gwj9j4fzw32zkn72a0x7z0hjnphv04wp97wagsb31"; depends=[magrittr R6 reticulate tensorflow tfruns]; }; + keras = derive2 { name="keras"; version="2.0.6"; sha256="1q7jp5a89glswa8dcy30v5gxw7fll20k2pgarxqd04an44lhi9ql"; depends=[magrittr R6 reticulate tensorflow tfruns]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; kergp = derive2 { name="kergp"; version="0.2.0"; sha256="1xamj19v84m1f9ls8ac8xbm6airyjf96i1l48yy4l2rvjdmx6m9l"; depends=[doParallel MASS numDeriv Rcpp testthat]; }; kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="2.0.2"; sha256="04bdggxvggmppp289n2zw6ijdm7y05gws6z7bp6fr8n1zsxy2w3c"; depends=[caret DiceKriging DiceOptim GA GenSA glmnet globalOptTests lhs matrixStats mvtnorm Rcpp RcppEigen]; }; kerndwd = derive2 { name="kerndwd"; version="2.0.1"; sha256="1grinlqjjsxw1x152f9y38lhijh74zc831ddc0lk2niq2rvzszdw"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; - kernelboot = derive2 { name="kernelboot"; version="0.1.1"; sha256="0pg05k87x97bpjnxi1dvfik5kykmgyy7njmn03mmrcrqwfl79kdz"; depends=[future Rcpp]; }; + kernelboot = derive2 { name="kernelboot"; version="0.1.2"; sha256="0k06zxq8978v7zsfylxld64819vd3wj33brpxz0fan3ni01rh7kn"; depends=[future Rcpp]; }; kernlab = derive2 { name="kernlab"; version="0.9-25"; sha256="0qnaq9x3j2xc6jrmmd98wc6hkzch487s4p3a9lnc00xvahkhgpmr"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.0"; sha256="0wibp4bbzxmjdyhp643v76accjy1w8jixmwgsdfrq2yjxacgnwcb"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.3"; sha256="0h3xv76dxch8kv4z7cgx60iaikk6906n75c4kc1mccpw0jvyxrvb"; depends=[MASS mvtnorm]; }; keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; keypress = derive2 { name="keypress"; version="1.1.1"; sha256="0w8hcxxx47zyz2cbz2s8va2rfb6s2ziw9ck1slq9kh3aqsx3i9g0"; depends=[]; }; + keyring = derive2 { name="keyring"; version="1.0.0"; sha256="0asa62cgs08k0g0yhvsxr2k8rfxy3hqkd4hrv0396394v13b08w5"; depends=[assertthat getPass openssl R6]; }; keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; }; kfigr = derive2 { name="kfigr"; version="1.2"; sha256="0hmfh4a95883p1a63lnziw8l9f2g0fn0xzxzh36x9qd9nm7ypmkw"; depends=[knitr]; }; kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; }; @@ -6982,7 +7129,7 @@ in with self; { kmconfband = derive2 { name="kmconfband"; version="0.1"; sha256="10n5w8k57faqcclwshs4m66i2i5b70i6f3xq5nqlgsi2ldkysbc9"; depends=[survival]; }; kmcudaR = derive2 { name="kmcudaR"; version="1.0.0"; sha256="1adixf4nsgnk8rgvcv37aznh8gxrfwn19ihh3c6siss51hlmhln2"; depends=[Rcpp RcppEigen]; }; kmeans_ddR = derive2 { name="kmeans.ddR"; version="0.1.0"; sha256="1i87cxakjbq1xwyjyyzv1xiqbrncsqx6baviidcdm3n0pakrqdsg"; depends=[ddR Rcpp]; }; - kmi = derive2 { name="kmi"; version="0.5.2"; sha256="0w440r3daksghvimbm0avp6c3rjvxaxsawvn7ig5bwnw60kry9il"; depends=[mitools survival]; }; + kmi = derive2 { name="kmi"; version="0.5.3"; sha256="0b3nibvi0skrx3mjfzypqmdqx8s9zkn11f0ljscqpjr28idx4hr0"; depends=[mitools survival]; }; kml = derive2 { name="kml"; version="2.4.1"; sha256="1my9gcripiqc6iphycjr3srj8qxy05yvd0648vblygrx2qym5hy2"; depends=[clv longitudinalData]; }; kml3d = derive2 { name="kml3d"; version="2.4.2"; sha256="1a3hqyhrsh12l1j1xlz4zy88impw3biz6w2qc80r11m549h0m6s9"; depends=[clv kml longitudinalData misc3d rgl]; }; kmlShape = derive2 { name="kmlShape"; version="0.9.5"; sha256="1p35ihjq84jnzq78yksdblc0c1qcn13f8n4khddsxcqvk3a44xb1"; depends=[class kml lattice longitudinalData]; }; @@ -6996,17 +7143,18 @@ in with self; { knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knncat = derive2 { name="knncat"; version="1.2.2"; sha256="1d392910y3yy46j8my1a7m0xkij2rc6vwq5fg22qk00vqli8drz2"; depends=[]; }; knockoff = derive2 { name="knockoff"; version="0.2.1"; sha256="197icnyxxmi6f0v0p2zm4910grbgkfjkd3xql79ny04ik047v0kp"; depends=[glmnet RJSONIO]; }; - knor = derive2 { name="knor"; version="0.0-1"; sha256="03npxd3jv8386z15lcq1w402f8r12cjy5yzbprd5wi83g7sbg4fp"; depends=[Rcpp]; }; + knor = derive2 { name="knor"; version="0.0-2"; sha256="1fpck9n3p16ii4ycr4daz8if71yps2bb4rq53sy2q4z9gqq7fr2q"; depends=[Rcpp]; }; knotR = derive2 { name="knotR"; version="1.0-2"; sha256="0kd1b9wibpwyaanz9ny61qgfvcg4d3rzpy05sfshlpp0b1y8d3xj"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.1"; sha256="0d78mgmz2yhfbf4m5jaa28aazaw2wf9vf1vxl53wrnpy0hxw329y"; depends=[base64enc dplyr httr jsonlite lazyeval lubridate purrr rstudioapi stringr tibble]; }; koRpus = derive2 { name="koRpus"; version="0.10-2"; sha256="1ykaky10zkj76w44fhk6kb6dqz1pgncmdnz4r2amcm08a8h96gsr"; depends=[data_table]; }; kobe = derive2 { name="kobe"; version="1.3.2"; sha256="1z64jwrq6ddpm22cvk2swmxl1j7qyz0ddk3880c7zfq6gk7f9bxl"; depends=[coda emdbook ggplot2 MASS plyr reshape]; }; kofnGA = derive2 { name="kofnGA"; version="1.2"; sha256="1j4gx6pkmasgbgcdlg6i5nzfrmim61c2hw34k5zfmwfbkrsgb575"; depends=[]; }; - kohonen = derive2 { name="kohonen"; version="3.0.2"; sha256="1dg2jmdlp888bcfkpmd8w9w9dj7y9r94fgr7gl2fkhlhkid9ss78"; depends=[MASS Rcpp]; }; + kohonen = derive2 { name="kohonen"; version="3.0.4"; sha256="1aq98qbmbzsdyimhn28qiyqfrwkwq70qmm5yhx0rvhjq53bn9622"; depends=[MASS Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="0.2.0"; sha256="1sk7r5v3d65w126vin9gawan3f21zrd9ps974l9nxj7kv1pa3szh"; depends=[digest dplyr httr purrr rgdal shiny xml2]; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; komadown = derive2 { name="komadown"; version="0.1.0"; sha256="08rg2qz4dmxl4xi0d7wdl2xgdmsc29fdc0yi40yddzrbpj4vs2z4"; depends=[bookdown knitr rmarkdown]; }; kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; + kpeaks = derive2 { name="kpeaks"; version="0.1.0"; sha256="1qxpncwyshv35h1190py6a69mljabfcjjs7v17a2rb5asahy3rk8"; depends=[]; }; kpmt = derive2 { name="kpmt"; version="0.1.0"; sha256="15d26khc0v3kc1c7l1avqp48pfqmc6xj32029mv7myivr41ashk3"; depends=[matrixStats]; }; kpodclustr = derive2 { name="kpodclustr"; version="1.0"; sha256="1fywgdj4q3kg8y9lwnj6vxg9cwgs5ccwj6m3knfgg92f8ghnsbsw"; depends=[clues]; }; kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; @@ -7030,7 +7178,7 @@ in with self; { l0ara = derive2 { name="l0ara"; version="0.1.5"; sha256="15qajzpvqnikg9k199cqvwp9qbrxx4zr9lsvyad96pa9qr156gvb"; depends=[Rcpp RcppArmadillo]; }; l1kdeconv = derive2 { name="l1kdeconv"; version="1.2.0"; sha256="1mk92sz9nsmxsn7yplhfcz07k022lrr61114ckrmm0x8hfd89zj8"; depends=[ggplot2 mixtools]; }; l2boost = derive2 { name="l2boost"; version="1.0"; sha256="1p0sbvlnax4ba4wjkh3r0bmjs601k590g7bdfk6wxvlj42jxcnkl"; depends=[MASS]; }; - laGP = derive2 { name="laGP"; version="1.4"; sha256="186ab5j0r716jxk4gvaw78s2vafj24gy9qz0wbfhalkf1hp7yblw"; depends=[tgp]; }; + laGP = derive2 { name="laGP"; version="1.5"; sha256="0b308biwkjndzr9jrxi8m2yc55kyik17xza1xfgghksix2wc2mgz"; depends=[tgp]; }; labdsv = derive2 { name="labdsv"; version="1.8-0"; sha256="0rbf7cswnj534jdi5hfaai12nbxj6l96f02c73ynraqvdqxb1bnz"; depends=[cluster MASS mgcv]; }; label_switching = derive2 { name="label.switching"; version="1.6"; sha256="0k6f31gwcjfncsgd5cm9zygplif2wr8zjqrw4gmrnxcgp2z58a9w"; depends=[combinat lpSolve]; }; labeledLoop = derive2 { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; @@ -7046,7 +7194,7 @@ in with self; { lakemorpho = derive2 { name="lakemorpho"; version="1.1.0"; sha256="1qdh67a6a6iibvvba12z763xf989qfh08b3xgk1hy1irgc8myvll"; depends=[cluster geosphere maptools raster rgdal rgeos sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; lamW = derive2 { name="lamW"; version="1.3.0"; sha256="00qa1sxyqb2r7f9yidg43cq2v1285f45xpm3z928jpi424mpg0fc"; depends=[Rcpp RcppParallel]; }; - lambda_r = derive2 { name="lambda.r"; version="1.1.9"; sha256="1j6287iqvs3ill6r5g6ksf5809qp0l0nf20ib8266m1r09lc9j14"; depends=[]; }; + lambda_r = derive2 { name="lambda.r"; version="1.2"; sha256="0vql32np716dpd0kjn7s7wgawd02ysgp2a5il4kb19nlw661ii3x"; depends=[]; }; lambda_tools = derive2 { name="lambda.tools"; version="1.0.9"; sha256="1wslxxh6rxny3n06y16dqwpczi3k42vrq4pbwwshl6kzhl56r45b"; depends=[lambda_r]; }; landest = derive2 { name="landest"; version="1.0"; sha256="1lp5sfqk0n7i23fmwjgzsabml1fsji1h9xq5khxzaz1bzqv1s08g"; depends=[survival]; }; landpred = derive2 { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; }; @@ -7078,7 +7226,7 @@ in with self; { lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.1.0"; sha256="13m4rsh0nbqfnyasbrf3bw844jg1l7bqd2drckrqwss2h7ks029q"; depends=[DiagrammeR lavaan]; }; - lawn = derive2 { name="lawn"; version="0.3.0"; sha256="0rws76dzpi2gpn90la663r1g9ywvpvjicjmgb6z7k5xg1gspgs5c"; depends=[jsonlite magrittr V8]; }; + lawn = derive2 { name="lawn"; version="0.4.0"; sha256="1fg5bn2h1lqxnbmf317nh8myi6zg2qj60hxdhqcsqczjk3b6a2n5"; depends=[jsonlite magrittr V8]; }; lawstat = derive2 { name="lawstat"; version="3.1"; sha256="0sdsxh2h06d3maqd1pvmnnvphaxav0z2kv5wpiy7dg17cgwv35c2"; depends=[Hmisc Kendall mvtnorm VGAM]; }; lazy = derive2 { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; @@ -7105,7 +7253,9 @@ in with self; { ldlasso = derive2 { name="ldlasso"; version="3.2"; sha256="0ij68zvgm8dfd2qwx6h6ygndac29qa0ddpf11z959v06n8jsnk11"; depends=[GenABEL quadprog]; }; ldr = derive2 { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; ldstatsHD = derive2 { name="ldstatsHD"; version="1.0.1"; sha256="152dlphxxzllgf7al8k34qcfg6n8ajxqym62i61ahbbgjlcd0x9r"; depends=[camel cluster corpcor evd fExtremes huge igraph MASS Matrix qvalue RBGL robustbase VGAM]; }; + leabRa = derive2 { name="leabRa"; version="0.1.0"; sha256="08yiwyfg9bp4i9w5yyw9p63wyvgj39kd64y3h21j2jmpw8zxncdq"; depends=[plyr R6]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; + leafSTAR = derive2 { name="leafSTAR"; version="1.0"; sha256="16zfaj0v6dx6mhy6m126lxa6w0dzfw4acm83jlbrizaz52amhv6a"; depends=[]; }; leaflet = derive2 { name="leaflet"; version="1.1.0"; sha256="05faikqdlbsj9lvl1lvhmagys71597jvgah8b9f1fqhgyj0bwx7l"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="0.2"; sha256="18y3hzbn4apn209rww8hk4mkx5ix6b6z01ydr31d39bqlgg6n7zf"; depends=[htmltools htmlwidgets leaflet leaflet_extras magrittr shiny]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="0.2"; sha256="1baxcgcxizyf05w8gb5zjmvrsbrhpwvrxrblcv5vpy4vk73921v1"; depends=[htmltools htmlwidgets leaflet magrittr shiny stringr]; }; @@ -7122,9 +7272,9 @@ in with self; { learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; lefse = derive2 { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lemon = derive2 { name="lemon"; version="0.3.0"; sha256="1ivam4b4sgvadazqn9f3dr5ffal723yk3l5rw35p8rmc3kmlhn7z"; depends=[ggplot2 gridExtra gtable knitr lattice RCurl]; }; + lemon = derive2 { name="lemon"; version="0.3.1"; sha256="0p0hvw0ndqcxcg8sqwk1kfrlksp985vd4jpkww7ijmw6kmwl9mwy"; depends=[ggplot2 gridExtra gtable knitr lattice RCurl]; }; lero_lero = derive2 { name="lero.lero"; version="0.1"; sha256="1jndsgy48fn085ilkh8dfc3w76kfnfj0x70d1m3h59zxi3x9lb82"; depends=[stringr]; }; - lessR = derive2 { name="lessR"; version="3.6.5"; sha256="1r0b18l47nwyfclqy19hyra94bi2bv960myq6vjiyarv1lhk8f3g"; depends=[ellipse foreign lattice latticeExtra leaps png readxl robustbase sas7bdat triangle]; }; + lessR = derive2 { name="lessR"; version="3.6.6"; sha256="1i02i9lzgx8rf5x7pcp1vxvsgdl9jdnldj7q7qg22blaphdbl7qb"; depends=[ellipse foreign lattice latticeExtra leaps png readxl robustbase sas7bdat triangle]; }; lestat = derive2 { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4p241y4xz0s3ir56kxjqw23g6m80v"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="3.0"; sha256="1mm0d7v29d594w2xxv6h1k6dsav2cs31hi64lyxjar1bi4snp6hj"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; lettercase = derive2 { name="lettercase"; version="0.13.1"; sha256="0s2s42v6a3mlz6084sk5wcbap3czgbd53f9p64pxwd1yfj18lbyx"; depends=[stringr]; }; @@ -7138,19 +7288,19 @@ in with self; { lga = derive2 { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; lgcp = derive2 { name="lgcp"; version="1.4"; sha256="10gnfqq5vx18w6f52fliyfnrjmyns9q5q59pn2m82q2fqwaz26d8"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_utils]; }; - lgtdl = derive2 { name="lgtdl"; version="1.1.4"; sha256="0y519hgrm2ynbhbs61vi8gkhwqgn69wpnd391wpgf4yrg2lx064b"; depends=[]; }; + lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; lhs = derive2 { name="lhs"; version="0.14"; sha256="1qnr3s9511nq3xqdbngllmw3mvnnpblma5dafyghxlpvydc2l481"; depends=[]; }; libamtrack = derive2 { name="libamtrack"; version="0.6.3"; sha256="0pdwrz19q1yls0rgr4579f31j86awizx3j31h7vdh6y70ngpmb82"; depends=[]; }; libcoin = derive2 { name="libcoin"; version="0.9-3"; sha256="1gmgppc5vf11zmsbyayljijd9n3n9j0ns1hia0x7m5jm6nyjxgql"; depends=[mvtnorm]; }; libsoc = derive2 { name="libsoc"; version="0.5"; sha256="0p01mcwnkb4g3dq0mx1gbwfbznp4b2dmhs8k8wmnh7wll16v9i6z"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0"; sha256="0qk70rl76lz2izgp2c1asx0yvi8xgfq1yg579kcygxk4pnxjdwv4"; depends=[Rcpp]; }; - lidR = derive2 { name="lidR"; version="1.2.1"; sha256="0kaz9v75raicrjjg4xwzm9qgljpa95ki716a78bj95kcqc556104"; depends=[data_table geometry gstat lazyeval magrittr RANN raster Rcpp RcppProgress rgeos rgl rlas settings sp]; }; + lidR = derive2 { name="lidR"; version="1.3.1"; sha256="162gf587rhpfx29kxlq21axhvjxkj9bx5zryl3vfzad9309n0an9"; depends=[data_table gdalUtils geometry gstat lazyeval magrittr mapedit mapview memoise raster Rcpp RcppProgress rgeos rgl rlas settings sp stringr]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3"; sha256="0qjx7czyrk47lnpq3aw43hh2z8b8yiqllcayk911f1hpf5vwbcir"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lifelogr = derive2 { name="lifelogr"; version="0.1.0"; sha256="1wygvw61ygpww0kahxhmjdncwg4zc2cshs0brzw18nfqaj8vpfav"; depends=[dplyr fitbitScraper ggplot2 lazyeval lubridate modelr plyr R6 shiny stringr tibble tidyr]; }; lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; }; - liftLRD = derive2 { name="liftLRD"; version="1.0-5"; sha256="0v0aczf9s3vr9kk7n6z9spwc82hf418v9vjiyfri3npn3ib112b7"; depends=[adlift nlt]; }; + liftLRD = derive2 { name="liftLRD"; version="1.0-6"; sha256="1mnrhdig7kb7g6ffw7x9l8bpn66y7bh3n6ds5r2gb3nplnidi45y"; depends=[adlift nlt]; }; liftr = derive2 { name="liftr"; version="0.6"; sha256="1i4d9fsyik8i0dcpp8drsm3xmjnmb8i48fxgci959n8f7w384w57"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; likeLTD = derive2 { name="likeLTD"; version="6.2.1"; sha256="1b5rg1nijc4vsl7xabq35ini84rpnd1yrxsk1vr7wd57yac25mmk"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; @@ -7158,14 +7308,16 @@ in with self; { likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.45"; sha256="0sl0q6w49l89i6s80scsr5lrr8jgdd0788i4b87w985zaxjqrh03"; depends=[alabama cond nleqslv pracma Rsolnp]; }; likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; limSolve = derive2 { name="limSolve"; version="1.5.5.3"; sha256="1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"; depends=[lpSolve MASS quadprog]; }; + lime = derive2 { name="lime"; version="0.3.0"; sha256="0ly921qf1hhcg6djbqxn0r6pbqxx4dznjy17hmskk9dmm7cadipf"; depends=[assertthat ggplot2 glmnet htmlwidgets Matrix Rcpp RcppEigen shiny shinythemes stringdist stringi]; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; }; linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; linbin = derive2 { name="linbin"; version="0.1.2"; sha256="0shw976nlryjvmvnyyiycchqs7zcg5flalywm1ymnv62nw3n55xs"; depends=[]; }; lindia = derive2 { name="lindia"; version="0.9"; sha256="1qma8wr0fkwx03x971crkh8cfc8z4374py1r1wvszj9wzi4vfp5r"; depends=[ggplot2 gridExtra MASS]; }; linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; + linemap = derive2 { name="linemap"; version="0.1.0"; sha256="0qkbmpfr742xbs3xn5ppx6q0prwrr9mk1c1mv050cm47dm7jcs6l"; depends=[sf]; }; lineup = derive2 { name="lineup"; version="0.37-6"; sha256="1xyvw00lwnx7j3cgk4aw69lam6ndjxx3wj14h4jpx1xn8l3w7652"; depends=[class qtl]; }; - lingtypology = derive2 { name="lingtypology"; version="1.0.6"; sha256="117jq315bp5ykdld1aban8xww8x8gvjg02rkqh1n0slkcsc4wkg0"; depends=[leaflet magrittr MASS rowr sp stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.0.7"; sha256="1257yxhqizzhl8cdllagk05ny5k4wsh1kgjc1vy7i0x7zi8jlkk1"; depends=[leaflet magrittr MASS rowr sp stringdist]; }; link2GI = derive2 { name="link2GI"; version="0.1-0"; sha256="1i16yf387izv8vn0z8f7wgk02hld83lhfb5c263mn1v3q5zj9kki"; depends=[gdalUtils raster rgdal rgrass7 sf sp]; }; linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; }; @@ -7187,7 +7339,7 @@ in with self; { listviewer = derive2 { name="listviewer"; version="1.4.0"; sha256="1273vk8pk393ciwahvpmdh9z4xdlhw3a7mlm7jsqxqnsrc6jrz3x"; depends=[htmltools htmlwidgets shiny]; }; liteq = derive2 { name="liteq"; version="1.0.0"; sha256="1r3rbn0a5nnwrhfdygn1hlvv0n3nd1ayddvkpdv5ibsp5fl5vjhy"; depends=[assertthat DBI rappdirs RSQLite]; }; littler = derive2 { name="littler"; version="0.3.2"; sha256="0anwlxyj82xgrccb3pf6glrkqbkw1871hj4b1qrkmd5ss2f3xq9j"; depends=[]; }; - liureg = derive2 { name="liureg"; version="1.01"; sha256="0qk1wgib4cljfq9qp99p5ls68d665m42cn4nkqmqjf1na96lq7ll"; depends=[]; }; + liureg = derive2 { name="liureg"; version="1.1.1"; sha256="11cybb1i3a0na3yadzwmn1hlglqk0zdzxj0n07ygsxrdq7sxbpnj"; depends=[]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.9.1"; sha256="1cvm58kivjw77a2fy1jwsajzl1d0i3i123p6glpwdlqn6rlharck"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; }; @@ -7197,7 +7349,7 @@ in with self; { lm_beta = derive2 { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; lm_br = derive2 { name="lm.br"; version="2.9.3"; sha256="1xadz0rygm58igk0ig0w45132gnsvjxvwqzca4m6v6i6lz9x55pf"; depends=[Rcpp]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; - lmSupport = derive2 { name="lmSupport"; version="2.9.8"; sha256="1g96540krrvycy7m3avhwazkmnyngk9lrjggny4wxhzn49i8p4ga"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; + lmSupport = derive2 { name="lmSupport"; version="2.9.11"; sha256="1yvckfahw3kq0r28ggrml7qhgm4ib5ihd971zxg62li4inrkri6b"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; lme4 = derive2 { name="lme4"; version="1.1-13"; sha256="13j4a721rx0272pdxrz6nabjv56xb6srklq5w4z1abc82lyvda2z"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; @@ -7223,7 +7375,7 @@ in with self; { lmomco = derive2 { name="lmomco"; version="2.2.7"; sha256="1xrw2a3iyp0i2kmcwgq0sr10v40q5c2n84xx8dxpvl3978vqidj8"; depends=[goftest Lmoments MASS]; }; lmridge = derive2 { name="lmridge"; version="1.0"; sha256="07zchmdcyz8agrs9q2ydcgicz3sxg893vv4rsynlpgyk2z5xnnjf"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-35"; sha256="107br1l7p52wxvazs031f4h5ryply97qywg9dzrkw4ydnvqq4j9g"; depends=[zoo]; }; - lmvar = derive2 { name="lmvar"; version="1.2.1"; sha256="0zgrrf8ilppzk030zqpqaw95fq0mh098qd5rgg4bpykzq1gfq58d"; depends=[Matrix matrixcalc maxLik]; }; + lmvar = derive2 { name="lmvar"; version="1.3.0"; sha256="0iczn4r83gdsvb8hk7av3pjf3am0z7hpqdn7xqpnyby5sqga5kv9"; depends=[Matrix matrixcalc maxLik]; }; loa = derive2 { name="loa"; version="0.2.38"; sha256="1k57n3j8nh0frgabhb5gh0scmgp5gzn2zc9l206mklbw06jkdp96"; depends=[lattice MASS mgcv png RColorBrewer RgoogleMaps]; }; localdepth = derive2 { name="localdepth"; version="0.5-7"; sha256="0h0y74xnhdqa7y51ljmpz7ayznppvy2ll06wfds6200lb9cxgr7k"; depends=[circular]; }; localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; }; @@ -7293,15 +7445,15 @@ in with self; { lsgl = derive2 { name="lsgl"; version="1.3.6"; sha256="0zkv5xgwrnwx0w0qpzsg7krd7fdnlr3a85q64xj1wx0gd578dqq6"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; lsl = derive2 { name="lsl"; version="0.5.5"; sha256="0555za3yqqdbcpxrl6vzj494784xl1wsmwp1apszaqncz2vwc9pg"; depends=[ggplot2 lavaan reshape2]; }; - lsmeans = derive2 { name="lsmeans"; version="2.26-3"; sha256="0pxpdvdlh0lf45f1b0s53dk8y73j2xnyvzixj1jnafmw1w6bj778"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; + lsmeans = derive2 { name="lsmeans"; version="2.27-2"; sha256="18b69cg09zkcxlvb838157gzr9bqwdnzf9vrwzr1vpzwdybl7np0"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; lspline = derive2 { name="lspline"; version="1.0-0"; sha256="0bc1nfpp1r5fi8rrg295k4r8pm03baqplrzwmk3sn4kdbp0apvgk"; depends=[]; }; lspls = derive2 { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; }; lsplsGlm = derive2 { name="lsplsGlm"; version="1.0"; sha256="1qh68r033fwq1hc19h2srl1k6znvvvrcp38ghxadsksjfxllvniy"; depends=[]; }; lsr = derive2 { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; }; lss = derive2 { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; }; - ltm = derive2 { name="ltm"; version="1.0-0"; sha256="1igkgb0jy3mzlnp9s6avhcpplwijz5g3x26a3lavyy3d9fjpmfpa"; depends=[MASS msm polycor]; }; - ltmle = derive2 { name="ltmle"; version="0.9-9-3"; sha256="04y0gl44ayyp8n3d92i0dkyanalc25da6prrqmiaw9nr3ykjj78l"; depends=[Matrix matrixStats speedglm]; }; + ltm = derive2 { name="ltm"; version="1.1-0"; sha256="1gxjz3rn5bacv7xdlinzk6rdcwragb76grjpk5wqs4shqbk0rld2"; depends=[MASS msm polycor]; }; + ltmle = derive2 { name="ltmle"; version="0.9-10"; sha256="0j52jjjcrvalaan26msykwhz63p7jym6ilgh562cjv4jpi9bxplk"; depends=[Matrix matrixStats speedglm]; }; ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; }; ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; }; ltsk = derive2 { name="ltsk"; version="1.0.4"; sha256="1p026ryq31iw7d8mbi4m2q43g5frj47387w8g46j50bcv11hh2zm"; depends=[fields gstat sp]; }; @@ -7318,7 +7470,7 @@ in with self; { luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; lvec = derive2 { name="lvec"; version="0.1.1"; sha256="1mpw01z0n0cql451qmi0b77pbfkhx6jyc4zzs5nl82jb6x3y20wn"; depends=[BH]; }; lvm4net = derive2 { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; - lvnet = derive2 { name="lvnet"; version="0.3.1"; sha256="1bzykd70j8xbvpxqwdac49pv7ndvjqljwywhbf6sn3yvq72n3hlj"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; + lvnet = derive2 { name="lvnet"; version="0.3.2"; sha256="0ynp7399q98dgh51fkw1r1z8iy3qm41ny887a955n8kp8pp9l737"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.0"; sha256="01sisj2vbx2yb5w9cjzyaf9j46vh4kkw05xccq1f7wmsg69zmj6b"; depends=[ggplot2 RColorBrewer]; }; lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; }; lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; }; @@ -7327,6 +7479,7 @@ in with self; { m4fe = derive2 { name="m4fe"; version="0.1"; sha256="06lh45591z2lc6lw91vyn066x0m1zwxxfp6nbirp1rz901v843ph"; depends=[]; }; mAr = derive2 { name="mAr"; version="1.1-2"; sha256="0i9zp8n8i3fxldgvwj045scss533zsv8p476lsla294gp174njr7"; depends=[MASS]; }; mBvs = derive2 { name="mBvs"; version="1.0"; sha256="0qq6yaqvpg3akwbbaamv1a5rsrwdsq5z161w0prvq8qcbyfwclni"; depends=[]; }; + mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; mFilter = derive2 { name="mFilter"; version="0.1-3"; sha256="1cz9d8447iiy7sq47civ1lcjafqdqs40lzxm2a4alw4wy57hc2h6"; depends=[]; }; mGSZ = derive2 { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; }; mHG = derive2 { name="mHG"; version="1.1"; sha256="1rz5ncrvvv9h9grls15apa63v2nh9j87fmp4mwjjil37jx6a5zki"; depends=[]; }; @@ -7347,15 +7500,16 @@ in with self; { maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; madness = derive2 { name="madness"; version="0.2.2"; sha256="0facd1km06kjd70prkjkns8x2nyavj4m7lgiyxd7gpr9plba5wmr"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; - madrat = derive2 { name="madrat"; version="1.8.0"; sha256="0a37nc7frciji990dfj1hx5rgiv5l7dvgdgrp0yh56636v6lpvyz"; depends=[digest magclass spam]; }; + madrat = derive2 { name="madrat"; version="1.22.1"; sha256="0wk2svhi4209p8ab8i2g9q22kswpisphb2a9ln5lzwdhnryk4ya9"; depends=[digest magclass spam stringr]; }; mads = derive2 { name="mads"; version="0.1.5"; sha256="1ac34iff9hvl1bxk3gs5s3i311g9y59nd6v9jhvnfd6wfhck7krs"; depends=[mrds]; }; madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; mafs = derive2 { name="mafs"; version="0.0.2"; sha256="1yx4y73hnd30x6cad7md07aiikhdsa6bsbha72j9vlncaj8d504m"; depends=[cmprsk colorspace CombMSC Epi etm forecast forecastHybrid fracdiff ggplot2 ggseas gtable munsell numDeriv plyr quadprog Rcpp scales tictoc tidyr timeDate tseries zoo]; }; - magclass = derive2 { name="magclass"; version="4.39"; sha256="0i0wfvfnvzc1gpgfhfn4765cjs92hhgrbwch04ci1dvmxmplnbxn"; depends=[abind maptools ncdf4 reshape2 sp]; }; + magclass = derive2 { name="magclass"; version="4.51.1"; sha256="1p4pbwjkn9ic3vqjh9m4b18s78f8wx0815n4dyg9pin8p14klzil"; depends=[abind maptools ncdf4 reshape2 sp]; }; magic = derive2 { name="magic"; version="1.5-6"; sha256="1399w1zhz79nj8cdhslybncd9h6rylfhb548nv22ip0dxxdkyv0v"; depends=[abind]; }; - magicaxis = derive2 { name="magicaxis"; version="2.0.1"; sha256="065x7076kps7bk66j0ivazqlqcich82y5fbb2953wwlnficx37wl"; depends=[celestial mapproj MASS plotrix sm]; }; + magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; + magicaxis = derive2 { name="magicaxis"; version="2.0.3"; sha256="08nkf9k2ijlm52ybncfiwrghy911wpvwpvdvllcz2d4slk1vdakj"; depends=[celestial mapproj MASS plotrix sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; - magick = derive2 { name="magick"; version="1.2"; sha256="035igzv57l2mimfhqqf44gg733cpqx5av12xyxmp5wcf71k3xm10"; depends=[curl Rcpp]; }; + magick = derive2 { name="magick"; version="1.3"; sha256="1bb5mcbxi917m4pxi8hk76h276kysgmsbq3vdnzl2nhh38d1ayfg"; depends=[curl magrittr Rcpp]; }; magree = derive2 { name="magree"; version="1.0"; sha256="1qkd6p5g3aigcb0f4d08gc5323alvahzmazm3bzsmz1w033xd1hh"; depends=[]; }; magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; @@ -7367,16 +7521,18 @@ in with self; { mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; mandelbrot = derive2 { name="mandelbrot"; version="0.2.0"; sha256="04a288jj8h1a04r584a02wg9dm3c6zifhqwj964ybsvgb4m6g99s"; depends=[reshape2]; }; + manet = derive2 { name="manet"; version="1.0"; sha256="1hb5mv05zcv4s2bpyh3vgkyf4r78fyvcwl3p1kwlwqn9cv1lgci2"; depends=[combinat igraph MCMCpack]; }; mangoTraining = derive2 { name="mangoTraining"; version="1.0-7"; sha256="0lw46j44jhdcyh079a7zjmxcnv5c6qsfachinlwv3ild1gwggr3p"; depends=[]; }; manhattanly = derive2 { name="manhattanly"; version="0.2.0"; sha256="185fkakx4v35n4gmlpk2kfm2bm8p320q4khkw936m09zx3aqz398"; depends=[ggplot2 magrittr plotly]; }; manifestoR = derive2 { name="manifestoR"; version="1.2.4"; sha256="1hd4qsa2xsa1dq5jnwh1bph34glkpaabjmsnavdjhkfzjilp32ya"; depends=[base64enc dplyr functional httr jsonlite magrittr NLP psych tibble tm zoo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.7.0"; sha256="1xiiaaay8szmw36vli3kgg4mn73hjdbaqq0w0l01wc2qhv3fa30n"; depends=[base64enc htmltools htmlwidgets knitr lazyeval miniUI shiny]; }; + mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapdata = derive2 { name="mapdata"; version="2.2-6"; sha256="0k3hsnyvax20jph384gca10rl7a9fcglgkqcjsc5hndx3qrwpanv"; depends=[maps]; }; mapedit = derive2 { name="mapedit"; version="0.3.2"; sha256="0x1jyll45kx1q3bq3visyq75jvinhw3h0yy1n1rams61vvxrqfxk"; depends=[dplyr htmltools htmlwidgets jsonlite leaflet leaflet_extras mapview miniUI sf shiny]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; - mapmisc = derive2 { name="mapmisc"; version="1.6.2"; sha256="0555yv0snhfrvvjdc3hz32s0lw5k395paz8ypw4lp5h9hlk4b8r6"; depends=[raster sp]; }; + mapmisc = derive2 { name="mapmisc"; version="1.6.3"; sha256="0akrrm5zrsgq0i69m1wb43xy5nh2w8fa05zz6fpwdmpjy4x09c2g"; depends=[raster sp]; }; mapplots = derive2 { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; }; mapproj = derive2 { name="mapproj"; version="1.2-5"; sha256="0rjz37r4rizk2c6jaf54f0kfb60dqv6b262cnhiwjl55d4x6l0pk"; depends=[maps]; }; mapr = derive2 { name="mapr"; version="0.3.4"; sha256="14f7zfzxb1h935bbybj2l2n4a62cnq0wvgmc09in0fvnl75jl971"; depends=[ggplot2 gistr jsonlite leaflet RColorBrewer rworldmap sp spocc]; }; @@ -7431,7 +7587,7 @@ in with self; { mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; mbest = derive2 { name="mbest"; version="0.5"; sha256="0l6vmcqkd2b0b90jmsswrhbdmhq2x92g7sr2l99rp7xp1cxdq02w"; depends=[bigmemory foreach lme4 logging nlme]; }; mbgraphic = derive2 { name="mbgraphic"; version="1.0.0"; sha256="0b4xr2ycx8v56fp40lnxv69qfp0yzai2hdwk3kw4wsmir91d2a91"; depends=[diptest dplyr extracat GGally ggplot2 gridExtra hexbin magrittr mgcv Rcpp scagnostics scales seriation shiny]; }; - mbir = derive2 { name="mbir"; version="1.0"; sha256="1m6d31br19wy3hz2d79df6qkdiyy8il7hf02md5bfvw4jvy2rh8z"; depends=[]; }; + mbir = derive2 { name="mbir"; version="1.1"; sha256="0nn4spw8bx0wnshwnph06wxdshxxcs100d5wh0apwrhz3w8xv2x6"; depends=[]; }; mblm = derive2 { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; }; mbmdr = derive2 { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; }; mboost = derive2 { name="mboost"; version="2.8-1"; sha256="163pf6dhl46w9n069pybqqc8khafhdkqhf9fmm095g66ypdbga4n"; depends=[lattice Matrix nnls party quadprog stabs survival]; }; @@ -7439,7 +7595,7 @@ in with self; { mc2d = derive2 { name="mc2d"; version="0.1-18"; sha256="1ljw8ms661bsdqbfpjvvrif9n0c2i6lzxyqj4rxhxsp3dj18w3g3"; depends=[mvtnorm]; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; mcIRT = derive2 { name="mcIRT"; version="0.41"; sha256="0pbwydl4zjzwdlpzwpqm4xhq716zgq9s7bvcbrqp6q0jkba9zjnw"; depends=[Rcpp RcppArmadillo]; }; - mcMST = derive2 { name="mcMST"; version="1.0.0"; sha256="0bw1ka9ics39khadzcwi4bqqswhgwa52mqf65bp8aml445gd62l1"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; + mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; mcPAFit = derive2 { name="mcPAFit"; version="0.1.4"; sha256="1h5kiry8bvdrgyqf7cqsag0b7rscwc7phayzf6h4css1667bvm0g"; depends=[PAFit RColorBrewer Rcpp]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.2"; sha256="12h4bv3hx1m6bsqdxj5n3b5gh98ms508am8pigz7ckmv0xkyhx85"; depends=[]; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; }; @@ -7455,10 +7611,12 @@ in with self; { mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; mclogit = derive2 { name="mclogit"; version="0.5.1"; sha256="1qnkkjq7gxivpz3mmbq5dx9a128r3xhrdzx96kc80h3w67yc7hbl"; depends=[Matrix memisc]; }; mclust = derive2 { name="mclust"; version="5.3"; sha256="0h5syvpg3azrz5d10z2afilaa27jb4azi38idzlv05mfcs16s6rb"; depends=[]; }; + mclustcomp = derive2 { name="mclustcomp"; version="0.1.0"; sha256="1j3r1gv6lbs40l1z5qn8010a7mqx7lnq2dkagx17bffg7d9pxv81"; depends=[Rcpp RcppArmadillo]; }; mcmc = derive2 { name="mcmc"; version="0.9-5"; sha256="1i3rahph8pbhi5dsyjnkazqklg4lhh3azlyvx4kvabx50q0awxn6"; depends=[]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda colorspace denstrip sfsmisc]; }; mcmcse = derive2 { name="mcmcse"; version="1.3-2"; sha256="0yz0zhqhsxxg1b0cf15ijxfj4q8csjng18bmq45anabllq16ymkj"; depends=[ellipse Rcpp RcppArmadillo]; }; mco = derive2 { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2brgxay69kcwm7y7s3gziq74fn4rw"; depends=[]; }; + mcompanion = derive2 { name="mcompanion"; version="0.4-5"; sha256="18l29cbggf5mdab8vdzmbsnc0p77llaq3ylp07a7gsq44bys8zq0"; depends=[gbutils MASS Matrix Rdpack]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="0.2-3"; sha256="0rakaa1p6z0p4jl4df357vi58wzph81ik6plc8zzl370r8mj1y8q"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive2 { name="mcr"; version="1.2.1"; sha256="0237w41xichd418ax9xviq4wxbcc6c0cgr5gvzkca67nnqgc4jaz"; depends=[]; }; @@ -7477,7 +7635,8 @@ in with self; { mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; mdsr = derive2 { name="mdsr"; version="0.1.4"; sha256="1g9a6g8rf2svndis7569bnbj3jx1mgli172fjzdypfnhiyhd46vb"; depends=[babynames DBI dbplyr downloader dplyr ggplot2 mosaic RMySQL tidyverse]; }; - meanShiftR = derive2 { name="meanShiftR"; version="0.50"; sha256="0wb08x9vanwfzs7ijskl53118jvy3z48gqda7gn33aq82dkablza"; depends=[]; }; + mdw = derive2 { name="mdw"; version="2017.8-27"; sha256="0rsp6s15fgb7rni2qhgjx6dz1byvbaan5zhi6ixskpfs3z6h8fv8"; depends=[]; }; + meanShiftR = derive2 { name="meanShiftR"; version="0.51"; sha256="0qcciayriygfwkb15n863amcpcfl97fr1sarwm3d269idf5m7w6x"; depends=[]; }; meanr = derive2 { name="meanr"; version="0.1-0"; sha256="1vbsqcbgbv0h4ld45cfpasy5sy5a019zn1fh141ylhsd9czrb9d4"; depends=[]; }; measuRing = derive2 { name="measuRing"; version="0.4"; sha256="165j3i5295hxzqg8l2hrd61a0fh9xmw61dpx8js8qjz1zi9rm84x"; depends=[dplR pastecs png tiff]; }; measurements = derive2 { name="measurements"; version="1.1.0"; sha256="1zi6mpwyxycbphq48s7vfc8gm76nidpa2gafp0jxiv56rwpv3jc3"; depends=[]; }; @@ -7485,19 +7644,20 @@ in with self; { medSTC = derive2 { name="medSTC"; version="1.0.0"; sha256="1f7w6jbxairqvghr5b7vgdllg3ian16a1fgi7vqlq0mhy2j6phan"; depends=[]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; medfate = derive2 { name="medfate"; version="0.2.2"; sha256="1vw9j04063sjwyfdkk94xsgz5zps7vmqha6dbsvi8ncb951cfijp"; depends=[meteoland Rcpp sp spdep]; }; - medflex = derive2 { name="medflex"; version="0.6-1"; sha256="0i3808qh4ryqcgx5rl60d4xdy25wzx008abijg5fcirsrdly7j91"; depends=[boot car Matrix multcomp sandwich]; }; + medflex = derive2 { name="medflex"; version="0.6-4"; sha256="0nd9izvmmpdw87y5f0hrz2fml51x53zvvn0irdc1ass3cj1b7bxc"; depends=[boot car Matrix multcomp sandwich]; }; mediation = derive2 { name="mediation"; version="4.4.6"; sha256="0prhpy9y26s388p9gv5sv4h5airixwy6ffjphhxmyp9h07088xxi"; depends=[Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; }; medicalrisk = derive2 { name="medicalrisk"; version="1.2"; sha256="1zdxv3rj7768kbyxfvr9n0hp4z7y0sf3r7ssqv731hjjp656l6xp"; depends=[hash plyr reshape2]; }; medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; }; + medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; }; mefa = derive2 { name="mefa"; version="3.2-7"; sha256="1qrf6d3y38q7yy6bg3bxg7514d9paz1f8y6sr7lbksi30qn92fmj"; depends=[]; }; mefa4 = derive2 { name="mefa4"; version="0.3-4"; sha256="11zg30i2fkxdv8fn7jilbmm7k5g0ls8f91bpq6qiwiagwg8gj2lh"; depends=[Matrix pbapply]; }; meifly = derive2 { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; - meltt = derive2 { name="meltt"; version="0.3.1"; sha256="0aypq23pdkb0q72g81ffylc0skm26p2wcy23byn86ydn09bbazk5"; depends=[ggmap ggplot2 plotGoogleMaps plyr reticulate scales sp]; }; + meltt = derive2 { name="meltt"; version="0.3.2"; sha256="0d66mxjn1a3a4m8pg45py9a2ylmaab1yly11pfa669cjkih76lz8"; depends=[ggmap ggplot2 plotGoogleMaps plyr reticulate scales sp]; }; melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; }; - mem = derive2 { name="mem"; version="2.9"; sha256="0syfhvxqxc2gcrmcpfgb3qafdih1dxkkg73gwg6cv8ly4406qhk5"; depends=[boot mixtools RColorBrewer reshape2 sm stringr]; }; - memapp = derive2 { name="memapp"; version="2.3"; sha256="0zsmrxnshyxzi18krrl6652wdwvgbaxwl8sxvjixf2j3chz6m6qd"; depends=[DT formattable ggplot2 ggthemes mem openxlsx plotly RColorBrewer readxl reshape2 RODBC shiny shinyBS shinydashboard shinyjs shinythemes stringi stringr]; }; + mem = derive2 { name="mem"; version="2.10"; sha256="1g122njbl50cdwga52zaf5iv3ds71yxzzyysffqsz4lg4khpr862"; depends=[boot mixtools RColorBrewer reshape2 sm stringr]; }; + memapp = derive2 { name="memapp"; version="2.5"; sha256="0lslxhxdfmb24142bs2xxcv1scgfgywz4275cszcvr86l20c0hh0"; depends=[DT formattable ggplot2 ggthemes mem openxlsx plotly RColorBrewer readxl reshape2 RODBC shiny shinyBS shinydashboard shinyjs shinythemes stringi stringr]; }; memgene = derive2 { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; }; - memisc = derive2 { name="memisc"; version="0.99.13.2"; sha256="0jq55j3a5qfwcrakyhrhifyq0q484ws34zk9dpkrkbnjzyqfg4ap"; depends=[lattice MASS repr]; }; + memisc = derive2 { name="memisc"; version="0.99.14.2"; sha256="1z2qqr24dz0prxbyfgwcg8nsj9svvgm7wymclb0yy4qppsz0cmw6"; depends=[lattice MASS repr]; }; memo = derive2 { name="memo"; version="1.0"; sha256="1pqlsn79gpm0d5bxnjg1c1gjaqdrdvcjvr84zpfk6nmsb2862w48"; depends=[digest]; }; memoise = derive2 { name="memoise"; version="1.1.0"; sha256="034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj"; depends=[digest]; }; memuse = derive2 { name="memuse"; version="3.0-1"; sha256="1fxjw209sjk9cfbbfw1ixnf2s8zzc73gnksxa9qax4mp6145i1w5"; depends=[]; }; @@ -7505,7 +7665,7 @@ in with self; { merTools = derive2 { name="merTools"; version="0.3.0"; sha256="1kc32zm1wmmivf1qfs6vi7y8kwibj6sr540is82dyh7xdmbc5mx3"; depends=[abind arm blme broom dplyr DT ggplot2 lme4 mvtnorm shiny]; }; merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; meshsimp = derive2 { name="meshsimp"; version="0.1.1"; sha256="0cdgq4vfjf0h6l55v687k5xs0nwmlpqmw424xgnsfnwxw5ljcvb1"; depends=[plot3D Rcpp RcppEigen]; }; - metRology = derive2 { name="metRology"; version="0.9-23-2"; sha256="16hdcrqa15mf2cfgl6r9awd0y2kwrdbld8sxqmwnchlvdbm6gib4"; depends=[MASS numDeriv robustbase]; }; + metRology = derive2 { name="metRology"; version="0.9-26-2"; sha256="1i9lxgphn8nmkcp2zgjs6ylbccmfgv9lfch00xmx1xfb538jz82q"; depends=[MASS numDeriv robustbase]; }; metScanR = derive2 { name="metScanR"; version="1.0.0"; sha256="0fy4r1bwi792f5z7d2c49yzx9flc6fhfmjxn0d0m4cci634nf1cb"; depends=[geosphere ggmap leaflet plotly plyr RColorBrewer RCurl rjson sp]; }; meta = derive2 { name="meta"; version="4.8-4"; sha256="0s2f1n404gfjf4k1h7x3jcys56x83y35zir7gyc32ydn88zfn57z"; depends=[]; }; meta4diag = derive2 { name="meta4diag"; version="2.0.5"; sha256="0hwzwyzr23sqlqpx2372419167wad1q7spyzmcxhf4f5hmqv14c9"; depends=[caTools shiny shinyBS sp]; }; @@ -7517,15 +7677,16 @@ in with self; { metaSEM = derive2 { name="metaSEM"; version="0.9.14"; sha256="0hzx2wp81hf3dkkq3vq8dpi8cxhkas6xv3zj822zchc1nwk4dn8g"; depends=[ellipse MASS Matrix mvtnorm OpenMx]; }; metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; metacoder = derive2 { name="metacoder"; version="0.1.3"; sha256="1kbxv4gvpq33vg0ri9mqkaqxlqhnccycha30dv48n4m4f3s7h8ad"; depends=[ape dplyr ggplot2 igraph lazyeval magrittr RColorBrewer RCurl readr reshape reshape2 scales seqinr stringr taxize traits zoo]; }; - metacom = derive2 { name="metacom"; version="1.4.7"; sha256="1xy86jc23h6l8lrcrs6ajbwqka20s6nyzyjyfzqj94k3idzcwqlk"; depends=[vegan]; }; + metacom = derive2 { name="metacom"; version="1.4.9"; sha256="1l3agymxz3qlrk0kzwlkqhalyw5ylsl6l0an8xcljgclymrb27j0"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; metafor = derive2 { name="metafor"; version="2.0-0"; sha256="0h14wd7hr1d40p5r70f2jgdgj24jwpnr4nrj6yp5qjr466v81z96"; depends=[Matrix nlme]; }; + metaforest = derive2 { name="metaforest"; version="0.1.0"; sha256="1jmd3rr3w9mdxgc1kqz7pc64pa8vrl4qf92h64791x1p8s71cpzk"; depends=[edarf ggplot2 metafor ranger reshape2]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; metagear = derive2 { name="metagear"; version="0.4"; sha256="0ww1j34600y99wyanj9ffg1019xqshb9c32wiqnsblyw8pq4va5f"; depends=[EBImage gWidgets gWidgetsRGtk2 hexView MASS Matrix metafor RCurl stringr]; }; metagen = derive2 { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; }; metaheur = derive2 { name="metaheur"; version="0.2.0"; sha256="1rr5mjx3v87alj7cl9hxldvhhbpkz1fzmymmkqv0hs65pny6gbqw"; depends=[doParallel foreach ggplot2 preprocomb reshape2]; }; - metamisc = derive2 { name="metamisc"; version="0.1.5"; sha256="1rq5bqdij71gf06i20mj6491pv6xjwyjj4m2qhzg41g4dn0bfsac"; depends=[ellipse lme4 metafor mvtnorm]; }; + metamisc = derive2 { name="metamisc"; version="0.1.6"; sha256="1y5hg8lp3n63q9p9xv0304i9g912xsy815lx50jcr9fx4w35i3dx"; depends=[ellipse lme4 metafor mvtnorm]; }; metansue = derive2 { name="metansue"; version="2.0"; sha256="102cddahlzm0b76y6pr7jxqxf28j6y3hsjd17fpnyvrwnzhqbz5m"; depends=[]; }; metap = derive2 { name="metap"; version="0.8"; sha256="06ny9zkilawdy0s8yiwhnygs3yppw89bbyf76zgdavykbzscz5lh"; depends=[lattice]; }; metaplot = derive2 { name="metaplot"; version="0.1.6"; sha256="0fkgsi6jbpp3fchl9dc4bn9ccjhvcn0s7ij7lvpwkvbxvfjwjsml"; depends=[dplyr encode fold lattice lazyeval magrittr rlang]; }; @@ -7539,7 +7700,7 @@ in with self; { meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.51"; sha256="1k5m561b6hpqvzrg5l16523ig1rxcsi4s172jmya039cwyk8mqfp"; depends=[ncdf4 raster sp XML zoo]; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; - meteoland = derive2 { name="meteoland"; version="0.5.9"; sha256="1kjnwl1mhp5zwfgfngc48388xdppv96b9clnk7r9l714nk58mq10"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; + meteoland = derive2 { name="meteoland"; version="0.6.4"; sha256="1bdwcrc55jlsljc8r16ccnfi2gfzglzjfghjyk4b9kdsqkm2xa85"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; metricTester = derive2 { name="metricTester"; version="1.3.3"; sha256="0sggd32ivzvi0xn0gn0hx0kp1zp1qzpzy1n6slqa3vda4f67l4yp"; depends=[ape doParallel dplyr foreach geiger MASS picante plotrix spacodiR]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; mets = derive2 { name="mets"; version="1.2.2"; sha256="1rdljq4069n7i05sqi75bcp1zpq69m13vf1nrjfg568cpwmr4m37"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; @@ -7550,7 +7711,7 @@ in with self; { mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; mfx = derive2 { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; }; mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; - mgcv = derive2 { name="mgcv"; version="1.8-18"; sha256="011mgcypr56xvm9nizsfsb2285kzql93x0d3lzg849g39vbpp4s2"; depends=[Matrix nlme]; }; + mgcv = derive2 { name="mgcv"; version="1.8-22"; sha256="1546p6aflg3z6xl2mns1n2c3j8q2spr9cjggj9rn33vrrhsv4fss"; depends=[Matrix nlme]; }; mglR = derive2 { name="mglR"; version="0.1.0"; sha256="1b7nd913d4a1szgw2qnhlnjqhfxr95xag6jwjcb2wnnxd12lib7n"; depends=[biomaRt dplyr gdata ggplot2 gplots magrittr stringr]; }; mglmn = derive2 { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; mgm = derive2 { name="mgm"; version="1.2-1"; sha256="131zw61d2g39pzgy7ap95ah6mgbbybcpci665cxshascmlki3rpr"; depends=[glmnet Hmisc matrixcalc stringr]; }; @@ -7572,7 +7733,7 @@ in with self; { micEconIndex = derive2 { name="micEconIndex"; version="0.1-6"; sha256="1ihly6qpyg1pms4nkvs6khxxqwr3fwg57i8pg0yhyy1apqxyj2xl"; depends=[miscTools]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[MASS miscTools systemfit]; }; mice = derive2 { name="mice"; version="2.30"; sha256="1r673x51vs3w7kz4bkp2rih4445hcmajw86gjwz7m2piajwvs817"; depends=[lattice MASS nnet Rcpp rpart survival]; }; - miceadds = derive2 { name="miceadds"; version="2.6-21"; sha256="05jv6w4r40k9z81i0jzyz3mmcxf2m142dwcmgxams0nb76n446wn"; depends=[CDM lme4 mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; }; + miceadds = derive2 { name="miceadds"; version="2.7-19"; sha256="1znshkz1rc934rkl08axiszl24ziibs7namqacfcdh1jz2jrggxv"; depends=[CDM lme4 mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; }; micemd = derive2 { name="micemd"; version="1.1.0"; sha256="0y452xsrxdcb3kahya1f969lrf9lq9cv7zxsdf329x3q563lrcsm"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; }; micompr = derive2 { name="micompr"; version="1.0.2"; sha256="1hmxi5wz7vfnvawh50zk316gr3ry59m820ddj2v9p7cxq21hwv9i"; depends=[]; }; microPop = derive2 { name="microPop"; version="1.3"; sha256="072qldi020m84j9crfvzvw2nzn5fagqmjjzb7g7i70zwqhl1kjsa"; depends=[deSolve]; }; @@ -7580,6 +7741,7 @@ in with self; { microbenchmark = derive2 { name="microbenchmark"; version="1.4-2.1"; sha256="0qn5r1a6qidghcisc2hpbdmj62pnixc3zz6p4ipk8mvakf0hdsvg"; depends=[ggplot2]; }; microclass = derive2 { name="microclass"; version="1.1"; sha256="0hl2s4135k187f0vqmj9snvmnwa5k9fg8ahivfs7ciknrcxfv3nk"; depends=[microcontax microseq Rcpp RcppEigen RcppParallel]; }; microcontax = derive2 { name="microcontax"; version="1.0"; sha256="0l5mfgda5xagjbh9bwv328k3m7kgggdm90rc8fr1ic59hvg56f3g"; depends=[microseq]; }; + microdemic = derive2 { name="microdemic"; version="0.1.0"; sha256="0sywdgxldmlin3bdns8549xlngn6qm6rql2avb2m5z7w4q7ql4d5"; depends=[crul data_table jsonlite tibble]; }; micromap = derive2 { name="micromap"; version="1.9.2"; sha256="1x4v0ibbpfz471dp46agib27i4svs8wyy93ldriryvhpa2w5948y"; depends=[ggplot2 maptools RColorBrewer rgdal sp]; }; micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; micropan = derive2 { name="micropan"; version="1.1.2"; sha256="0rvaampr5vlpz253lhy330380646g2vqj1hqp6gsk0gp0hdlkd7g"; depends=[igraph microseq]; }; @@ -7625,6 +7787,7 @@ in with self; { missDeaths = derive2 { name="missDeaths"; version="2.5"; sha256="0pslssgf580zd0dd7m0l97bzgxnywj2qac0agxv6ih1a0xlxz874"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; missMDA = derive2 { name="missMDA"; version="1.11"; sha256="185ia5zg5gdrkjpj5sql46lz5svw77wjy9zplpqhrmgx43fv0w0i"; depends=[FactoMineR mice mvtnorm]; }; + missRanger = derive2 { name="missRanger"; version="1.0.0"; sha256="0advj6a57pj79xn43gxp7ll4b3y7hl5cvz5d7hw69f4yk4blwkjr"; depends=[FNN ranger]; }; mistat = derive2 { name="mistat"; version="1.0-4"; sha256="0gzng0kl3handy3k7g62c4sdcf9l6x0b69jxmfrwfd4297f57n9n"; depends=[]; }; mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; mitml = derive2 { name="mitml"; version="0.3-5"; sha256="1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb"; depends=[haven jomo pan]; }; @@ -7657,11 +7820,11 @@ in with self; { mize = derive2 { name="mize"; version="0.1.1"; sha256="18mnpwwbwlyx0ixsjqai28ahp4g0wncv8c5qwy17xq2zbhwlq3jh"; depends=[]; }; mizer = derive2 { name="mizer"; version="0.2"; sha256="0cpal9lrjbvc923h499hbv4pqw3yjd4jvvhgayxgkak2lz2jzmcz"; depends=[ggplot2 plyr reshape2]; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; - mkin = derive2 { name="mkin"; version="0.9.46"; sha256="0b4sw7xw8qvdab0a3qh8j7khaa5vinhxrgmnnwnxkmiqv33b08i7"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; + mkin = derive2 { name="mkin"; version="0.9.46.1"; sha256="094kdhawkdl30rw9r0djqk6hzw3vbg1b3yl0mhbqawlfnjca97ca"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; mlDNA = derive2 { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; }; mlPhaser = derive2 { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; - mlVAR = derive2 { name="mlVAR"; version="0.3.3"; sha256="1psw3kcfq23c4i1qq4vfgjwd1lgjhhhly6bwz37ky5l753lvl9yf"; depends=[abind arm clusterGeneration corpcor dplyr lme4 mvtnorm plyr qgraph]; }; + mlVAR = derive2 { name="mlVAR"; version="0.4"; sha256="08iaq6wq0ngd60nhmlj8c0x8r1fal1zfv2zpd6ll54szcvdbxahr"; depends=[abind arm clusterGeneration corpcor dplyr lme4 MplusAutomation mvtnorm plyr qgraph]; }; mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.3.22"; sha256="0q5dpqx6zapawjjq8rqk112w5qsk7r6sc90y63yvllk9yhdgygyw"; depends=[circlize shiny XML]; }; mldr_datasets = derive2 { name="mldr.datasets"; version="0.3.15"; sha256="1xivwmv6hvl026c5ymc23fr36sk797dxn2wa9lp20dgh5s0cq10n"; depends=[]; }; @@ -7683,11 +7846,11 @@ in with self; { mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; }; mlt = derive2 { name="mlt"; version="0.2-0"; sha256="09pvqyyzlb76x47v2lbgsdrld0z0r1v3c29q3a0dsx62ia367mqr"; depends=[alabama basefun BB numDeriv quadprog sandwich survival variables]; }; mlt_docreg = derive2 { name="mlt.docreg"; version="0.2-0"; sha256="1n23bjfjacyq7b9n47ai9is8p0ka6m36085c0q1i47zpz5kv6d5k"; depends=[mlt numDeriv]; }; - mltools = derive2 { name="mltools"; version="0.3.1"; sha256="0a439cgkpvm5b00s4jss21x5cqlik8ncwd4vfa1qwzrr73kzvksp"; depends=[data_table Matrix]; }; + mltools = derive2 { name="mltools"; version="0.3.3"; sha256="0r2i46hkzckgl3ly7sdzkzi94bwzkni2rqyrz647r5rhjqhfgkhj"; depends=[data_table Matrix]; }; mlxR = derive2 { name="mlxR"; version="3.2.0"; sha256="1a0104h4b0qag20xv5sg8m4b0ndvz843lnc4jypfxns3bi5k4v1m"; depends=[ggplot2 Rcpp XML]; }; - mma = derive2 { name="mma"; version="5.0-0"; sha256="1k65ar8nhv7ya254ap94hbx91siqcwxlg3yac85xxxs9rr6b27bf"; depends=[car doParallel foreach gbm gplots survival]; }; - mmand = derive2 { name="mmand"; version="1.5.2"; sha256="11fvicwkiw5r6yg7psqarfkb0cfsjj87lz0d4mr1hrncfrz0yz55"; depends=[Rcpp]; }; - mmap = derive2 { name="mmap"; version="0.6-12"; sha256="12ql03wzwj23h8lwd07rln6id44mfrgf9wcxn58y09wn3ky1rm6a"; depends=[]; }; + mma = derive2 { name="mma"; version="5.0-1"; sha256="02y8fahaz3lxix9cg9sxpyap441k1az9bf1zadqzx8mvw510ixvs"; depends=[car doParallel foreach gbm gplots survival]; }; + mmand = derive2 { name="mmand"; version="1.5.3"; sha256="1n0h7nia9jjc11g8417nfd3wsg4m3bmblm9bsjd0b52vqxhpxmzh"; depends=[Rcpp]; }; + mmap = derive2 { name="mmap"; version="0.6-15"; sha256="0p3dsq0vffb0x0i8xh8p1r0b2hwk4zfi6nbwsi3cyaj1m7dzm0fh"; depends=[]; }; mmc = derive2 { name="mmc"; version="0.0.3"; sha256="03nhfhiiadga8mcp33kj20g33v9n5i62fdqgi20h5p80g849k719"; depends=[MASS survival]; }; mmcm = derive2 { name="mmcm"; version="1.2-6"; sha256="0lk2lk8j4hq6shw3vpq53gvh2w1gwkayvgfny4i04k5fglbwivg7"; depends=[mvtnorm]; }; mmds = derive2 { name="mmds"; version="1.1"; sha256="0f5qzkfhi7vg8vsd8r41idmbwrrgc7qzfnp81adms2yzrza17wrw"; depends=[]; }; @@ -7706,7 +7869,7 @@ in with self; { mnlogit = derive2 { name="mnlogit"; version="1.2.5"; sha256="0vwragk71hisz7dy4h5i6zl9yp6wvzwlnfyw2kprnd94y02laq63"; depends=[Formula lmtest mlogit]; }; mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; mnormt = derive2 { name="mnormt"; version="1.5-5"; sha256="1b34xxrnf35khsx82mhvmk96sgfr2flyasaah7qkb2976pwxay7z"; depends=[]; }; - mnreadR = derive2 { name="mnreadR"; version="0.1.0"; sha256="0sw4hinfcxnj906zfv6yhwf6c9khlfqp1biga32agvvkgnk5b1ni"; depends=[dplyr]; }; + mnreadR = derive2 { name="mnreadR"; version="1.1.0"; sha256="15zlksrqkp8kqfaqvmg83cxyyvmxnxs0ybl79ksc5j7h28j3nh8j"; depends=[dplyr ggplot2]; }; mockery = derive2 { name="mockery"; version="0.3.0"; sha256="1ydgxqdzwn68b84a7557nasgm1r5jk2mivzwq9x71p7zwqf4c8vd"; depends=[testthat]; }; mockr = derive2 { name="mockr"; version="0.1"; sha256="0340v6189ivlzzriwk7yhf3v2k651x05fd1xrqfxxjgwhysaqj6z"; depends=[lazyeval]; }; mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; @@ -7720,6 +7883,7 @@ in with self; { modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; modelr = derive2 { name="modelr"; version="0.1.1"; sha256="1rqw0b583vp107zqp4h3wj51dvv4hb3wszfr1f5f48xassc53f95"; depends=[broom dplyr lazyeval magrittr purrr tibble tidyr]; }; modeltools = derive2 { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; }; + modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; modes = derive2 { name="modes"; version="0.7.0"; sha256="185qjrmz2sj0l5931g4d3kx3jpgjn4rf4lln84h6g97prk1ykqmj"; depends=[]; }; modest = derive2 { name="modest"; version="0.1"; sha256="0nwa71pk015pqamiyrbcq0pxdq43mvcq8zpvfn2xmzcjhm30770b"; depends=[knitr shiny shinyBS]; }; modeval = derive2 { name="modeval"; version="0.1.3"; sha256="10yjba2dlwrgd3ycw10y1sa3xdxf2spq829bbxwfissc5l9gk48x"; depends=[caret dplyr e1071 ggplot2 gridExtra knitr magrittr mlbench ModelMetrics psych purrr stringr tibble]; }; @@ -7732,11 +7896,11 @@ in with self; { mogavs = derive2 { name="mogavs"; version="1.0.1"; sha256="1bzjrcisbg0fb8kj8x9ngd9i1nrhif1rdacz6nrny6xrmw0m3ckp"; depends=[cvTools]; }; mokken = derive2 { name="mokken"; version="2.8.7"; sha256="04crg01wshvb88s4kw1sfdyywm7zzprc7mi2nxymrllppz2msd4w"; depends=[poLCA]; }; moko = derive2 { name="moko"; version="1.0.1"; sha256="1d1gyv44z8k196hfh8a9iccmlrwb42bj1xzabs07h306gpi9m73d"; depends=[DiceKriging DiceOptim emoa GenSA GPareto mco]; }; - molaR = derive2 { name="molaR"; version="4.2"; sha256="1xz4vfb9rkw731cxjqvh7hpcm2lly9hmxp951il536gwb665jh1j"; depends=[alphahull rgl Rvcg]; }; + molaR = derive2 { name="molaR"; version="4.3"; sha256="1bzk7k6d1zbi0fhf9xwdg5mv7dcgajjbb6wxafx4nc2fjxhlldzi"; depends=[alphahull rgl Rvcg]; }; mombf = derive2 { name="mombf"; version="1.9.5"; sha256="1s776bvfkivif7i3338l1pk8qi5b6b7sxb9zgcidw4kwmj388rdd"; depends=[actuar mgcv mvtnorm ncvreg survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; - momentuHMM = derive2 { name="momentuHMM"; version="1.1.0"; sha256="1iwx6hbrfvpfgyhsfq8hibmvc0v3s209pdmvskgp4w9lhfljfxvb"; depends=[argosfilter boot Brobdingnag car CircStats conicfit crawl doParallel foreach geosphere ggmap ggplot2 gstat MASS mitools moveHMM mvtnorm nleqslv numDeriv qdapRegex raster Rcpp RcppArmadillo sp splines2 survival]; }; + momentuHMM = derive2 { name="momentuHMM"; version="1.1.1"; sha256="10n9w861dknh4ifqp4ry0wzl26nrz18yz5kasl4l9xx3i31qmlnb"; depends=[argosfilter boot Brobdingnag car CircStats conicfit crawl doParallel foreach geosphere ggmap ggplot2 gstat LaplacesDemon MASS mitools moveHMM mvtnorm nleqslv numDeriv qdapRegex raster Rcpp RcppArmadillo sp splines2 survival]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; mondate = derive2 { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; mongolite = derive2 { name="mongolite"; version="1.2"; sha256="19zhscsgqvzx5gqryzl82dw6impc6sacx2shanmnj4zfgs7bgwqr"; depends=[jsonlite openssl]; }; @@ -7754,10 +7918,11 @@ in with self; { mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; morse = derive2 { name="morse"; version="2.2.0"; sha256="0l52hwhbspf1d6wi0qnwgwjjc1kkixkfdsf81jvwshnxbci4s3kw"; depends=[coda dplyr epitools ggplot2 gridExtra reshape2 rjags stringr]; }; - mosaic = derive2 { name="mosaic"; version="1.0.0"; sha256="0ih7m5x0h32z36k0fpi1s6gj06zajbbg09hl9ff6c32p6mw171vz"; depends=[dplyr ggdendro ggformula ggplot2 glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; }; + mosaic = derive2 { name="mosaic"; version="1.1.0"; sha256="18d8qxrxldyjb2aanbih5qh91wi5gcf989j6vcnnikgvxyxizz1s"; depends=[dplyr ggdendro ggformula ggplot2 glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; }; mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.0"; sha256="05s14rmgi15xcz50hcz7l26l95yx9g4i3kihzh0laz8bpi443i39"; depends=[MASS mosaic mosaicCore]; }; - mosaicCore = derive2 { name="mosaicCore"; version="0.2.0"; sha256="16qgdjkig8srazn8rbrhmv6z9rhvyb0m2lv9n11x662xhpbbq6nw"; depends=[dplyr lazyeval rlang tidyr]; }; + mosaicCore = derive2 { name="mosaicCore"; version="0.4.0"; sha256="0624lnflwhraqrp3h3s5ryi3skn74gr0b10fq77qmp5h4is3cbc0"; depends=[dplyr lazyeval rlang tidyr]; }; mosaicData = derive2 { name="mosaicData"; version="0.14.0"; sha256="0f092wp2lpj8rk6r2bd5mxp4q3n7ia9h838z8prrz56vwh3gbpw0"; depends=[]; }; + mosaicModel = derive2 { name="mosaicModel"; version="0.3.0"; sha256="1gx4rzh0h922gyb50vz6q5vqqp5ry5hf2mq95948q2gcady91k5w"; depends=[caret dplyr ggformula ggplot2 knitr lazyeval MASS mosaicCore testthat tibble tidyr tidyverse]; }; moult = derive2 { name="moult"; version="2.0.0"; sha256="177fhi3f5qsg2k4qb1cgviq96aln80qwri1hf9yym6wrzn8crj7r"; depends=[Formula Matrix]; }; mountainplot = derive2 { name="mountainplot"; version="1.2"; sha256="1bbgkps1yhfa0lmapqkhhl5mc63p0gzszxw2g910dbi1cjc0pphx"; depends=[lattice]; }; mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; @@ -7790,17 +7955,18 @@ in with self; { mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.4"; sha256="1xlgbjm339wr2rs5i6ddyp1lmfgzjb53gw44c3cj1x5qx1jrp7b1"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.4"; sha256="0dfx85yd4swd2cwm7pmxa3q7sgqkrj1sr145i13cdcp76wh95hp1"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; - mrgsolve = derive2 { name="mrgsolve"; version="0.8.6"; sha256="0iv093j9jfpq82qs57kp7clxvsa23iipww2gd9vlqmv8pl9zc0cn"; depends=[BH dplyr lazyeval magrittr Rcpp RcppArmadillo tibble]; }; + mrgsolve = derive2 { name="mrgsolve"; version="0.8.9"; sha256="1k6rzmhkgp2gc2m5d2zz1b0cn1czmgsl1h3gw61gmz8gkw55835y"; depends=[BH dplyr lazyeval magrittr Rcpp RcppArmadillo tibble]; }; mri = derive2 { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-0"; sha256="1344x7gc7wvmcqp0sydppavavvps5v7bs0dza2fr8rz3sn4as8sa"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; - msBP = derive2 { name="msBP"; version="1.3"; sha256="180gx1cml6wl5sp359cqfi8qj1l3jgakzrwxcpacxqqmijgnx1jf"; depends=[DPpackage]; }; + msBP = derive2 { name="msBP"; version="1.3-1"; sha256="0ziqzkylawc6kpcfzqwrwn6vp0562rd2yx5a4zg8p1n0y2gdpdzc"; depends=[]; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; msaR = derive2 { name="msaR"; version="0.2.0"; sha256="1yj70wxpqbjiwfskb68nx2criz3v426b1wnc9bnsl9cr417zhn9s"; depends=[ape htmlwidgets]; }; - msaenet = derive2 { name="msaenet"; version="2.6"; sha256="16h08jfghlzpbivglawm0qj4kgqnghx08p7dsqzwkxgywv6x6a2b"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; + msaenet = derive2 { name="msaenet"; version="2.7"; sha256="15jxdyc2s0dzjm6665win9y96ijyiv3ggin54z4rrh7qgv6vs7xa"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; + mschart = derive2 { name="mschart"; version="0.2.1"; sha256="0pbzs05gx0qxyggaqld3ysi3aqdqrggj6d3zbzcj3m93q6xpabv8"; depends=[cellranger data_table officer purrr R6 writexl xml2]; }; mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; @@ -7833,9 +7999,9 @@ in with self; { mudfold = derive2 { name="mudfold"; version="1.0"; sha256="1zh9qh2ja91lk2z4lpkqinn63v577qivbl0qh3xixfr63primby7"; depends=[ggplot2 gtools reshape2 zoo]; }; muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; - multcomp = derive2 { name="multcomp"; version="1.4-6"; sha256="18pd5v288g4d3kyp1wg0fv6ypyhqq9y17fdxkj0ljsj1f7kgp7py"; depends=[codetools mvtnorm sandwich survival TH_data]; }; + multcomp = derive2 { name="multcomp"; version="1.4-7"; sha256="0njhm9b0znnp1pj7sfg8mnqvc6pkc7vrb82wzwpsywp1f5nbdgx3"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive2 { name="multcompView"; version="0.1-7"; sha256="18gfn3dxgfzjs13l039l2xdkkf10fapjjhxzjx76k0iac06i1p7i"; depends=[]; }; - multdyn = derive2 { name="multdyn"; version="1.5.1"; sha256="1rqvfgz3lcjb1lgzp2w6wzqdysj4c1qrw77nrdc14pgm59g2vvvl"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; + multdyn = derive2 { name="multdyn"; version="1.6"; sha256="06yab2lmxp7lc7zjk8n194mn5vza0yjbp276iair3ry35my4h3v8"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; multfisher = derive2 { name="multfisher"; version="1.0"; sha256="1pc3f6f87n29cb4caszp4arpy33pc3a0iwmrqinhyw66xjnqm8qp"; depends=[]; }; multgee = derive2 { name="multgee"; version="1.6.0"; sha256="17qrfvxxapqzjy2ps7kk9k9hkmb9zdxflwclyagp1amgv50la49f"; depends=[gnm VGAM]; }; multiApply = derive2 { name="multiApply"; version="0.0.1"; sha256="1hgvvi00297rri9k5mnz7kmzpf1yxjmj153wwx4a68wv2mf9sx44"; depends=[abind doParallel foreach future plyr]; }; @@ -7851,13 +8017,14 @@ in with self; { multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; multigraph = derive2 { name="multigraph"; version="0.71"; sha256="1h162vhx439fmkq0pi95d3lsrcjf06kii91hamj66dpjg9wma8q7"; depends=[multiplex]; }; multigroup = derive2 { name="multigroup"; version="0.4.4"; sha256="1r79zapziz3jkd654bwsc5g0rphrk9hkp1fpik8jvjsa1cix40mq"; depends=[MASS]; }; + multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; }; multilevel = derive2 { name="multilevel"; version="2.6"; sha256="19zrvpq23dn69d7kai1rgw5b8ibmgybnbg6isliq0n8bv9jvrzia"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.4"; sha256="0v4mhdpagmkjsc8x4wlqxa88yl3v0y91a1bbq1lh3rhqfmp9yra5"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multimark = derive2 { name="multimark"; version="2.0.1"; sha256="0d283gvzqmdwr1sxgfb5ir9zw0sahj1wph7izcy1h63h6qlci828"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; - multinet = derive2 { name="multinet"; version="1.1"; sha256="0jhq6lhc81fl0m5zy7131xrdzvy4iqgixdbzc4klnzijzjsm22yi"; depends=[igraph Rcpp]; }; + multinet = derive2 { name="multinet"; version="1.1.1"; sha256="13f7gqf45ydnyiv36gwcrc8mgv5gy61fak0in7f8bss4bvfldbxx"; depends=[igraph Rcpp]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; - multipanelfigure = derive2 { name="multipanelfigure"; version="0.9.0"; sha256="1vblwn15817xxixbcy2smsp51cjyfvh34c1v9ddxypj9ycx09zd3"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types caTools ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="0.10.5"; sha256="0am4vi8mwbrvg6lmh53xp70mwi0klkpd11bd262kcfz125hbjy7n"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types caTools ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-1"; sha256="080wpyifpw41p6jip2ia7439jdhzyb7lbhs2qzzg0hn6c0qq7mrr"; depends=[mgcv survival]; }; multiplex = derive2 { name="multiplex"; version="2.7"; sha256="1da28sb2rsnhs3bisgc4npjky3v1rssqh4jb0l51p50p665b5sjz"; depends=[]; }; multiplyr = derive2 { name="multiplyr"; version="0.1.1"; sha256="0bsf2zhzqwl3skg26fm27j2wpifky0mph26acrlq8p72njkbcw4d"; depends=[bigmemory bigmemory_sri magrittr]; }; @@ -7884,9 +8051,9 @@ in with self; { mutSignatures = derive2 { name="mutSignatures"; version="1.2"; sha256="1kbp221lm43a5wiw754yjkd3qidmca20m0i8jlxsqk8ijbp40ky2"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; mutoss = derive2 { name="mutoss"; version="0.1-10"; sha256="1pijr3admnciiwdgxbdac4352m7h08jyvpj7vdd27yx07wp2rri3"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-10"; sha256="16fgmpnym9nhiywqimjgv10swrvs3whp0nlzsw573vv0k6qjmwd2"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; - mvLSW = derive2 { name="mvLSW"; version="1.2"; sha256="0xa79asrb57c5jssyb51b95v5szv1006gh08bfwnlyjbbfngs4wd"; depends=[fields wavethresh xts zoo]; }; + mvLSW = derive2 { name="mvLSW"; version="1.2.1"; sha256="012p828pyzz6xnv2akax5hx79v522dg4a2gqrjss526qylpg5j9l"; depends=[fields wavethresh xts zoo]; }; mvMORPH = derive2 { name="mvMORPH"; version="1.0.9"; sha256="09368vgyb1s18awfr07hs1s40n2h15hy08fmir3ayhdfrdain4k6"; depends=[ape corpcor phytools spam subplex]; }; - mvPot = derive2 { name="mvPot"; version="0.1.2"; sha256="0ni953ncm8h4ap0gjimlxjypgjaj2crlx4vscqi7a158hphahj2g"; depends=[evd gmp MASS numbers]; }; + mvPot = derive2 { name="mvPot"; version="0.1.3"; sha256="16m9i33sbgx69426i1nkimkrp75a6jbmkzlsp9bjbm7iyxdcl48b"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-8"; sha256="07dizclqjlwj29yb3xwjihjh8kmn6jiq5cpf8rcirylzykfdv3wk"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; mvSLOUCH = derive2 { name="mvSLOUCH"; version="1.3.3"; sha256="18gnxs1cx4f7r3m2vgrkmm41vwkamk9mn5hcgjacv2adl0ihnagd"; depends=[ape corpcor mvtnorm numDeriv ouch]; }; @@ -7900,15 +8067,16 @@ in with self; { mvdalab = derive2 { name="mvdalab"; version="1.2"; sha256="0jgvpspvfj4m79rn8bfb7rihh6w948b7z66qisckdmv6wyxwwr4i"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.1-2"; sha256="1051l10fbr7m9rmrlvj98660f0pn992n3vxiwnhml07wvvdknw3d"; depends=[Matrix numDeriv]; }; mvinfluence = derive2 { name="mvinfluence"; version="0.8"; sha256="08p5hxqa8qp8g52w2d3jqbjzrv607fdm80k6vwaz63fxhk8h82wq"; depends=[car heplots]; }; - mvmesh = derive2 { name="mvmesh"; version="1.4"; sha256="14yk09s1ym4p9nijxqasd3060hncmr1br7lv9rk9vm96bgi6l1rc"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; + mvmesh = derive2 { name="mvmesh"; version="1.5"; sha256="0my43559jh8ln1fx5rh5vw24vr6kxpd2h5scylfxfv2qfk794l0b"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; mvmeta = derive2 { name="mvmeta"; version="0.4.7"; sha256="1yadaviq66wdfs0dipn6gxk7jqvzwzjdr8lkfggdsl4vyyi9pwip"; depends=[]; }; mvnTest = derive2 { name="mvnTest"; version="1.1-0"; sha256="0p37skzpljzz19x1hwh2hbxqins19zkbz7nlgfws5pgp9apazafq"; depends=[MASS mvtnorm]; }; - mvna = derive2 { name="mvna"; version="2.0"; sha256="0qy4s8v20ccjdgqj3lgnl903b7m1rgc5lq8w66d5dl41s0jlnmx6"; depends=[lattice]; }; + mvna = derive2 { name="mvna"; version="2.0.1"; sha256="10i42hjm5bk62c20pmxhya283yzw1902ivkflmyqy79jri266dxf"; depends=[lattice]; }; mvnfast = derive2 { name="mvnfast"; version="0.2.2"; sha256="1b548cl6gf5vks90z7hf4nl5hbl5jb1r50vnpv1hsjv2qbn0k9hr"; depends=[BH Rcpp RcppArmadillo]; }; mvngGrAd = derive2 { name="mvngGrAd"; version="0.1.5"; sha256="0ir4pakfb2jq84rbfqix6rph8q6cgadjdn49rrdl4439b8hlsg8k"; depends=[]; }; mvnmle = derive2 { name="mvnmle"; version="0.1-11"; sha256="02mpmrr22cqb3v8x7kydgg715yl3lrdgzgdqpchmp0xrl2db8gq4"; depends=[]; }; mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; + mvord = derive2 { name="mvord"; version="0.0.1"; sha256="0lx7gs9yi43am6rynqm8kiddi8jyn6q06vn886w5y2wm1hqxpw59"; depends=[MASS optimx pbivnorm]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.0.8"; sha256="07a2pv8bw5k0faiy0skdchg7c0n236saq5d8plqq7234n3rjl8pg"; depends=[robCompositions robustbase sgeostat]; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; @@ -7971,7 +8139,7 @@ in with self; { nearfar = derive2 { name="nearfar"; version="1.1"; sha256="0i2nc1b4vslgjj29x5q24yxv9l3i0g5hcrbm9xy1b3039n70cwix"; depends=[car GenSA MASS nbpMatching]; }; neariso = derive2 { name="neariso"; version="1.0"; sha256="1npfd5g5xqjpsm5hvhwy7y84sj5lqw9yzbnxk6aqi80gfxhfml4c"; depends=[]; }; neat = derive2 { name="neat"; version="1.1.1"; sha256="12q9g8b0cf9j9cp0xc4h4bs4jv251arq9pf7c2hqgvirgr10ni2g"; depends=[igraph]; }; - neatmaps = derive2 { name="neatmaps"; version="1.0.2"; sha256="01kxn6r77grxvb40k4w548dpal74j3sdr33622aqrjvg7r8w1w3k"; depends=[dendextend flexdashboard ggplot2 heatmaply igraph knitr plotly pvclust]; }; + neatmaps = derive2 { name="neatmaps"; version="1.0.5"; sha256="13v23xsvc5jd3pv5z931h4gdwwf5d2qfix8pqgnj726d94cjgiig"; depends=[dendextend ggplot2 heatmaply igraph pvclust]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-5"; sha256="0fdhc0v0b820wfg3sypvya7zhg7mhfmdbfiwn1lj3a2xg01zvc2n"; depends=[]; }; @@ -8016,7 +8184,7 @@ in with self; { nhstplot = derive2 { name="nhstplot"; version="1.0.1"; sha256="1f07gfmbx80as54mlzdbs2z1vzc78rjy6i6m7zd4jplgcqdcynws"; depends=[ggplot2]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; - nima = derive2 { name="nima"; version="0.3.0"; sha256="10g0a8qa64sk16xrya3qhrlrjbjyq7ndv208xz36knp5az2n27ak"; depends=[assertthat ggplot2 gridExtra plyr survival]; }; + nima = derive2 { name="nima"; version="0.4.5"; sha256="1fllq76k4r07ymd58s865hgg3yrmwa34kr5mjd89n50mm1m110mh"; depends=[assertthat devtools ggplot2 ggthemes gridExtra gtools plyr ProjectTemplate scales survival]; }; nimble = derive2 { name="nimble"; version="0.6-6"; sha256="0y1gziq7aks5kzzpwn852w6d9b3gj6vky0m4hwd302ps4gw1i6k3"; depends=[coda igraph]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; @@ -8040,7 +8208,7 @@ in with self; { nlstimedist = derive2 { name="nlstimedist"; version="1.1.1"; sha256="1222vj2w4f8xh7fkrzlyarr7980a6wj047p5p0nw3cfna3mmhi5b"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; }; nlstools = derive2 { name="nlstools"; version="1.0-2"; sha256="0mjn1j9fqqgr3qgdr0ki4lfbd0yrkanvya4y2483q3wklqa6qvjc"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; }; - nlts = derive2 { name="nlts"; version="0.2-0"; sha256="14kvzc1p4anj9f7pg005pcbmc4k0917r49pvqys9a0a51ira67vb"; depends=[acepack locfit]; }; + nlts = derive2 { name="nlts"; version="0.2-2"; sha256="0bx6xqa3j0k01p43vnv5lcv2pryjzgsak77y1cr9rm2xwqa3j6az"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="0.1.1"; sha256="0976jafmdhy2rz5fcarb7hh1vaanm8l2610hk06f5k93xjhypg8j"; depends=[]; }; nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; }; nmw = derive2 { name="nmw"; version="0.1.1"; sha256="0dqcix916as40h54i78g4437k8zbdlwbdfzmjyp08i9xr0gc0a80"; depends=[]; }; @@ -8052,13 +8220,14 @@ in with self; { noaastormevents = derive2 { name="noaastormevents"; version="0.1.0"; sha256="1pkfmvp20f6xi2iy7l6c67zspp9f4wkrh7s308hlklms2difhp6m"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 htmltab hurricaneexposure lubridate maps plyr RColorBrewer stringr tidyr viridis XML]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; nodiv = derive2 { name="nodiv"; version="1.1.6"; sha256="1srcmv4mmmsmkk4nbbnmrkv4z19l80agvwlh2q1j7xdi26wpqc5r"; depends=[ape picante raster sp vegan]; }; - nofrills = derive2 { name="nofrills"; version="0.1.0"; sha256="1cxfzpqi1ydzmcpix3qs4hdy9fjvc9l0drplrk4fqhzyml9k9a98"; depends=[rlang]; }; + nofrills = derive2 { name="nofrills"; version="0.2.0"; sha256="07c7hwml49dzslbxlq8m6h6xfya5a2s0fg177mv436387qrdyf1n"; depends=[rlang]; }; noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; }; nomclust = derive2 { name="nomclust"; version="1.1.1106"; sha256="17hb89k72sw3ya0wm3n95mpx4vj7mpl4mzs8qwl2773dh2mcjgjq"; depends=[cluster dummies]; }; - nomogramEx = derive2 { name="nomogramEx"; version="2.0"; sha256="1as0hbmb37z9izz95x9rd98a0fs4b6zbhzjpgnyq5c1j4219vzs3"; depends=[pracma rms]; }; + nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; noncensus = derive2 { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; + noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.3"; sha256="1pcah255hh3lqabxgjb5fsaap4s2d92lvxw9a48l1p4dkmm1lbsx"; depends=[Matrix Rcpp rgl TSA tseries]; }; nonmem2R = derive2 { name="nonmem2R"; version="0.1.7"; sha256="1a3azvf9dbmi3l3crmkv1qvrd0j1d14x4s9hjk2r1cayiazpmbib"; depends=[lattice latticeExtra MASS mvtnorm xpose4]; }; @@ -8071,7 +8240,7 @@ in with self; { nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; nopaco = derive2 { name="nopaco"; version="1.0.3"; sha256="1sbjgzd7q2gjhs5qsy23w30cv73d9d6g08ymq18wppqpir5hikh2"; depends=[Matrix]; }; nopp = derive2 { name="nopp"; version="1.0.8"; sha256="0yjnzxlmadh2g0frfwm7rrr0kqb5pjvrnjmzl6pikzr99yh8aags"; depends=[MASS mlogit]; }; - nor1mix = derive2 { name="nor1mix"; version="1.2-2"; sha256="14djjhhivl49jnsmnydcswmc6bzfvgjjg7pibg32a9p3y2f0lmnq"; depends=[]; }; + nor1mix = derive2 { name="nor1mix"; version="1.2-3"; sha256="1bvk888qml9qr7q703s7qzgm0sqfchcjdjqwqllm5vrjx0cnapj3"; depends=[]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; norm = derive2 { name="norm"; version="1.0-9.5"; sha256="01j1h412yfjx5r4dd0w8rhlf55997spgb6zd6pawy19rgw0byp1h"; depends=[]; }; norm2 = derive2 { name="norm2"; version="2.0.1"; sha256="09447dng9px1ynfp382vjmh5iqdnhc7kxg28cbmqx7ncj1z5a2bm"; depends=[]; }; @@ -8081,13 +8250,13 @@ in with self; { normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; - nos = derive2 { name="nos"; version="1.0.0"; sha256="0p60jfknmkpmh9a5590xcdra8473f0h063w3xj2sq8myv1hgd2q1"; depends=[dplyr gmp]; }; + nos = derive2 { name="nos"; version="1.1.0"; sha256="0hbncama8cx8q0rc56bil38fbj33z49v4d6zdkvxs6wgmmglnrfs"; depends=[dplyr gmp]; }; nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; not = derive2 { name="not"; version="1.0"; sha256="1hwrka8a5jygm3zjh5jhzjx2bvdqip7pb5009vkk7k0sp8m760kq"; depends=[]; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; novelist = derive2 { name="novelist"; version="1.0"; sha256="0wzx0vkqvl9sfhbbrzylsxhm3qmjj5w8sy5w6gvd104fn84d49yk"; depends=[]; }; - nowcasting = derive2 { name="nowcasting"; version="0.0.82"; sha256="0czm3xk993r1fynjy8pi7381916kg5311as1xqhx0hizkl1b1p7j"; depends=[corpcor DBI httr matlab RCurl RMySQL seasonal stringr xts zoo]; }; + nowcasting = derive2 { name="nowcasting"; version="0.0.90"; sha256="0ggrsv92s4hpf960m1vbnnlkzp15v35vilabvzb665y53sj8wb6x"; depends=[corpcor httr lubridate matlab RCurl xts zoo]; }; noweb = derive2 { name="noweb"; version="1.0-4"; sha256="17s65m1m8bj286l9m2h54a8j799xaqadwfrml11732f8vyrzb191"; depends=[]; }; np = derive2 { name="np"; version="0.60-3"; sha256="12hzmhh59dfifssj08bjwxszxy38irami70bq14dxlm48fjyz17g"; depends=[boot cubature quantreg]; }; npIntFactRep = derive2 { name="npIntFactRep"; version="1.5"; sha256="14ms66ppzb4jjsa3fparic6gdn913f6wv2ccjyb02j1ahs4iaa4g"; depends=[ez plyr]; }; @@ -8106,9 +8275,10 @@ in with self; { npmr = derive2 { name="npmr"; version="1.1"; sha256="1ss8ypvv6qcdxv7l3szivliwmhidmzi3572p3nz96ysndf56akl4"; depends=[]; }; npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; nppbib = derive2 { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; + npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; }; npregfast = derive2 { name="npregfast"; version="1.4.0"; sha256="1p5hp8mld05p03lrgyqwdh5wg4qh7n2bqx9w5p7z4dvvh6h67nji"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; - nprobust = derive2 { name="nprobust"; version="0.0.1"; sha256="13fc84ahv2gid3b1iyyc151v10pafaxbbym3g891ivxglyw10zy1"; depends=[Rcpp RcppArmadillo]; }; - nproc = derive2 { name="nproc"; version="2.0.6"; sha256="07f5awjc7ds8xghvkvc0z6jna4n09syr63941n8g2q9099rvw9kc"; depends=[ada e1071 glmnet MASS randomForest ROCR tree]; }; + nprobust = derive2 { name="nprobust"; version="0.1.1"; sha256="0aynp42y0qn0jl9f26rk358hjdswkz6anwvni7frxnkb7l1vyrd5"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + nproc = derive2 { name="nproc"; version="2.0.9"; sha256="0n2jjizwdrdf9jq409lv7z0bxvy7dk7lki6xfp5fmsdcd2dmshly"; depends=[ada e1071 glmnet MASS randomForest ROCR tree]; }; npsf = derive2 { name="npsf"; version="0.2.0"; sha256="0cww1fi0amgc9n1hbfy3z7xgwrbcdwvsr2d6l8lpsr1bdcpgbjzv"; depends=[Formula]; }; npsm = derive2 { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; }; npsp = derive2 { name="npsp"; version="0.5-3"; sha256="0ck6iymfc73bzrifdc2sagcliz1yakqk1yv67a3ykha996jsrx99"; depends=[quadprog]; }; @@ -8131,7 +8301,7 @@ in with self; { numKM = derive2 { name="numKM"; version="0.1.0"; sha256="0pnwb7skp5jx5ibgfkympq59m9sf71gvk5zc0fwik539vrzfykdf"; depends=[survival]; }; numOSL = derive2 { name="numOSL"; version="2.3"; sha256="1bcj1qk3nx1jqhldx9rcwphvlxspz3bj4vb891hkw2fa2i4559c5"; depends=[]; }; numbers = derive2 { name="numbers"; version="0.6-6"; sha256="05qmv12b90vkzf2b50qjnp8hja6rms91jj97knx70n2yhpb2lnd9"; depends=[]; }; - numform = derive2 { name="numform"; version="0.0.5"; sha256="1i0dj5gsqiiinngrxnl61c7rmwkq3ybd5irh3b6zh3b0dxgjpdn4"; depends=[]; }; + numform = derive2 { name="numform"; version="0.3.0"; sha256="1lxb4gqa5z3ncrh95i10cnv3kxnvc4lqs7yypdhqn5yidddvcydj"; depends=[]; }; nutshell = derive2 { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_audioscrobbler nutshell_bbdb]; }; nutshell_audioscrobbler = derive2 { name="nutshell.audioscrobbler"; version="1.0"; sha256="10fvc5d22gnfb0bkgbww48f0vvcaja96g5gfv85kap939j11172j"; depends=[]; }; nutshell_bbdb = derive2 { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; }; @@ -8154,9 +8324,8 @@ in with self; { obs_agree = derive2 { name="obs.agree"; version="1.0"; sha256="191xshnrncjqzwd2rdq334vsx0338q3y3k1nbm04hdaysbnla9jv"; depends=[]; }; obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; - oc = derive2 { name="oc"; version="0.96"; sha256="110pf3rqcab0671djx25jwwl8rbaskcd2lrcv56d786j693y2ash"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.0"; sha256="1rpgq6mqrdzz52ln897f5k8yyz5i14s3lxqmy3nwsxf3q2bdf3yh"; depends=[]; }; - oce = derive2 { name="oce"; version="0.9-21"; sha256="1nwnfs75mdq0s13jz5l9zv1rjx5637yljhrc56sghwq38gi1mpal"; depends=[gsw]; }; + oce = derive2 { name="oce"; version="0.9-22"; sha256="0wxgk4hr5s0kz3qby7zwrp8pdpcwb4p67mrza5gh90kv0hfirnjh"; depends=[gsw testthat]; }; oceanmap = derive2 { name="oceanmap"; version="0.0.9"; sha256="07awxbj0gc1k8f6myqk5g54qk1n3bammrpfqi0rbfambgzrw3n5c"; depends=[abind extrafont fields mapdata maps maptools marmap ncdf4 plotrix raster sp]; }; ocedata = derive2 { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; @@ -8168,15 +8337,16 @@ in with self; { odfWeave = derive2 { name="odfWeave"; version="0.8.4"; sha256="1rp9j3snkkp0fqmkr6h6pxqd4cxkdfajgh4vlhpz56gr2l9j48q5"; depends=[lattice XML]; }; odfWeave_survey = derive2 { name="odfWeave.survey"; version="1.0"; sha256="0cz7dxh1x4aflvfrdzhi5j64ma5s19ma8fk9q2m086j11a1dw3jn"; depends=[odfWeave survey]; }; odpc = derive2 { name="odpc"; version="1.0.0"; sha256="1mhak9drp0a7h1yrbk08cs00hbvkfkj8r1y6klhr40sdych4q506"; depends=[forecast gdpc Rcpp RcppArmadillo]; }; + odr = derive2 { name="odr"; version="0.3.2"; sha256="0bp6aw0mv649clrm84firm4wdrxardpzgwaqddkzi222czgba7is"; depends=[]; }; oec = derive2 { name="oec"; version="2.4"; sha256="18pww1isp8w1g1l7xrxlxdv27abwmwp7rd6q1gn5kqn5sdq0spc6"; depends=[curl dplyr jsonlite readr servr]; }; oem = derive2 { name="oem"; version="2.0.6"; sha256="1q8nwxmf9gizwsn2795qah7f4fb8zhygqxj6kwdy5j7afr1h3zjz"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; - officer = derive2 { name="officer"; version="0.1.5"; sha256="1hwvskhaz4lv4wbhsxpbk1xh8nr0blza7x58xgpz4gksg0nwan2f"; depends=[base64enc digest dplyr gdtools ggplot2 htmltools magrittr purrr R_utils R6 Rcpp tibble uuid xml2 zip]; }; + officer = derive2 { name="officer"; version="0.1.7"; sha256="0gyl3pm80cg035gwk090475zhhgb8s34y9pkjnbs6cdkk21f1d35"; depends=[base64enc digest dplyr ggplot2 htmltools magrittr purrr R_utils R6 Rcpp tibble uuid xml2 zip]; }; oglmx = derive2 { name="oglmx"; version="2.0.0.3"; sha256="02skdnf89ryl4d8ja1a9mj1jzzmjqjgfdcsf6v5dpjn1z9aycc6c"; depends=[maxLik]; }; oii = derive2 { name="oii"; version="1.0.1"; sha256="0w1afajkr5vly9qi1r2iz1ikbvyvy6hcbc10g8s7g6zi8db5dgf4"; depends=[Deducer gmodels rapportools]; }; okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; - olsrr = derive2 { name="olsrr"; version="0.2.0"; sha256="0xlp54wag3k0bqy22vly953xf5jslrpx1z4vj5rbivnnfxaw3ixk"; depends=[dplyr ggplot2 goftest gridExtra magrittr nortest purrr Rcpp tibble tidyr]; }; + olsrr = derive2 { name="olsrr"; version="0.3.0"; sha256="0y5s11bqkir4wllk2aigll8791hw5pxn9qk9i32n9d8h5s88spdg"; depends=[dplyr ggplot2 goftest gridExtra magrittr nortest purrr Rcpp tibble tidyr]; }; omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; ompr = derive2 { name="ompr"; version="0.6.0"; sha256="1yjzi2xg9543g0bwx95anvx2sckdmbbh7k4hmljff2lrpffwf735"; depends=[dplyr lazyeval Rcpp]; }; @@ -8200,11 +8370,12 @@ in with self; { openSTARS = derive2 { name="openSTARS"; version="1.0.0"; sha256="0arry24nkd50nkdnddzxagrpy4lky9smc4xr1nl6q9nwxyfgdskg"; depends=[data_table progress raster rgdal rgrass7 sp SSN]; }; openVA = derive2 { name="openVA"; version="1.0.3"; sha256="09wbhl0g6q1rhi6yr3wpbns4ik7jalpagacn6am09i6zvmz8745j"; depends=[ggplot2 InSilicoVA InterVA4 nbc4va Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.1-0"; sha256="0ybly7xmxrlyn12al2pk1w1yjm857npj3ih3zl1p0sd744x8pm6w"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval lubridate mapproj MASS mgcv plyr RColorBrewer Rcpp reshape2]; }; + openair = derive2 { name="openair"; version="2.1-5"; sha256="19fqg05swsxqs19gi125h9xq43s44fxg51q05y4fhgsvxbvd7aj9"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval lubridate mapproj MASS mgcv plyr RColorBrewer Rcpp reshape2]; }; opencage = derive2 { name="opencage"; version="0.1.2"; sha256="1wnv5mgapdnkpg62sv0375jac2rdnchggjfjnr07bziwpf3xj74d"; depends=[dplyr httr jsonlite memoise]; }; opencpu = derive2 { name="opencpu"; version="2.0.4"; sha256="1vxc52qh5mgfga689l8w0isrxxnd2jmgkh9fha2hhyk874hhcawq"; depends=[brew curl devtools evaluate httpuv jsonlite knitr mime openssl protolite rappdirs sendmailR sys webutils zip]; }; - openintro = derive2 { name="openintro"; version="1.4"; sha256="1k6pzlsrqikbri795vic9h191nf2j7v7hjybjfkrx6847c1r4iam"; depends=[]; }; - openssl = derive2 { name="openssl"; version="0.9.6"; sha256="0ffwllii8xl6sa2v66134g0fwaw1y3zn3mvaa4nrc120vv5d3mkd"; depends=[]; }; + opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; + openintro = derive2 { name="openintro"; version="1.7.1"; sha256="059azlasdkmp8f54qpjf3mq5dyqakw0dgx0kx85wfdmhq38zal5n"; depends=[]; }; + openssl = derive2 { name="openssl"; version="0.9.7"; sha256="178fcp9f245i0k9s2w45kbw0ml0r9pfc73ak8hvicw4jz639wzb9"; depends=[]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; openwindfarm = derive2 { name="openwindfarm"; version="0.1.0"; sha256="1f1pmp1h283ypyl0bz54ps0b6hwax59mmlfl0qzickmq4wjdn0qz"; depends=[anytime dplyr foreach httr leaflet magrittr readr]; }; openxlsx = derive2 { name="openxlsx"; version="4.0.17"; sha256="1mq4lasp12kc30sxcsmz9gskd114l8s7z7wd6svv2nm8qllrhsqi"; depends=[Rcpp]; }; @@ -8240,6 +8411,7 @@ in with self; { optparse = derive2 { name="optparse"; version="1.4.4"; sha256="1ff4wmsszrb3spwfp7ynfs8w11qpy1sdzfxm1wk8dqqvdwris7qb"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="2.3-0"; sha256="125b9sfdk4bdcj1vq5rxlrskv1zra31x8d96pdxnqvcnkmwxm4zh"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; + optrdd = derive2 { name="optrdd"; version="0.9"; sha256="1l27rs4ry8qsak7fbdnx06bwhzyp432d4slj4bb18agm192j1rq3"; depends=[Matrix quadprog]; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; opusminer = derive2 { name="opusminer"; version="0.1-0"; sha256="1m4gsjylz58pbmhgcy4l9hqdsgy8ra1zg0d3rb6h2qiwfyfm0yh4"; depends=[arules Matrix Rcpp]; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; @@ -8275,6 +8447,7 @@ in with self; { oro_pet = derive2 { name="oro.pet"; version="0.2.3"; sha256="06agl6rvd01h6mnilj0vl52dxw6b7b41vl6vmbvaq5qy1wmiaiz7"; depends=[oro_dicom oro_nifti]; }; orsifronts = derive2 { name="orsifronts"; version="0.1.1"; sha256="1js4q2s1mn263x8szl5q47ajfxv9lsjd5zyphwyhbkqrnd8ijd3w"; depends=[sp]; }; orsk = derive2 { name="orsk"; version="1.0-3"; sha256="0j8bz5kddzglcljycxy8lv8h5f6hvz88nzwq3b9cdyayd8mlbxs2"; depends=[BB BHH2]; }; + orthoDr = derive2 { name="orthoDr"; version="0.1.0"; sha256="1lh65g6jk2ciig9z6mc477wwwar9z7bcfid12ki9390icxz5f464"; depends=[plot3D pracma Rcpp RcppArmadillo rgl survival]; }; orthogonalsplinebasis = derive2 { name="orthogonalsplinebasis"; version="0.1.6"; sha256="07rbd0fhs2gsk7wj41y2h7wf6pfg324vzv2al753d8kqyx5ns2dj"; depends=[]; }; orthopolynom = derive2 { name="orthopolynom"; version="1.0-5"; sha256="1gvhqx6jlh06hjmkmbsl83gri0gncrm3rkliyzyzmj75m8vz993d"; depends=[polynom]; }; osDesign = derive2 { name="osDesign"; version="1.7"; sha256="0y68pnsmq4nlmfsn28306q2kxab200pirr6ha0w4himzpnw1sil3"; depends=[]; }; @@ -8372,7 +8545,7 @@ in with self; { parcor = derive2 { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; }; parfm = derive2 { name="parfm"; version="2.7.5"; sha256="1wnklksqybhaqwsfifwv8gmqjl6g9dm9s4z131mbjn4dm7bj1bra"; depends=[msm optimx sn survival]; }; parfossil = derive2 { name="parfossil"; version="0.2.0"; sha256="12gsc5n4ycvhzxvq5j0r3jnnrzw1q412dbvmakipyw2yx2l2s7jn"; depends=[foreach fossil]; }; - parlitools = derive2 { name="parlitools"; version="0.2.0"; sha256="0i64phiga3m496xgdqg4vf5086b58xrkwrz0g6ara6jjqrliykl1"; depends=[dplyr hansard httr jsonlite mnis sf stringi tibble]; }; + parlitools = derive2 { name="parlitools"; version="0.2.1"; sha256="14nzcbjddwnsiwwksl7bf2qk1kzzcnjc0b47ilqiq4nc4c386im3"; depends=[dplyr hansard httr jsonlite mnis sf stringi tibble]; }; parma = derive2 { name="parma"; version="1.5-3"; sha256="0yjpmxz20v6k107qylw42yf1b231hzym9dizjcq1kalivvscczc5"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; parmigene = derive2 { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; parsec = derive2 { name="parsec"; version="1.1.2"; sha256="1hf3c23rnxckw4s2vqzbhkjgiir1nv1811saximj0mbih9w2vqpf"; depends=[]; }; @@ -8382,6 +8555,7 @@ in with self; { partialAR = derive2 { name="partialAR"; version="1.0.10"; sha256="18hw0azhvd3737wi5cy8ympwfrj6ag01w1a4csy6kl2kifldg6b7"; depends=[data_table FKF ggplot2 MASS plot3D Rcpp tseries urca zoo]; }; partialCI = derive2 { name="partialCI"; version="1.1.0"; sha256="00gdr25zz327iscasm74bxj0k6h94m59qwaf9vf8xcqfpp0n22wa"; depends=[data_table FKF ggplot2 glmnet MASS partialAR Rcpp TTR zoo]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; + partitionComparison = derive2 { name="partitionComparison"; version="0.2.2"; sha256="1dhwwifq1f4i1qi2sdnhiampbj6bpwc65j3qnbiikzcchs1mb6nd"; depends=[lpSolve Rdpack]; }; partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; partitions = derive2 { name="partitions"; version="1.9-19"; sha256="1pklfnjdc094c8nzkqcdvqzdh8v3p5n8jbg4pf9678iw648saiyx"; depends=[gmp polynom]; }; @@ -8410,7 +8584,7 @@ in with self; { patternize = derive2 { name="patternize"; version="0.0.1"; sha256="0xmz7ca555275a4x89vdmyk9x3m3sk964iwspv0dnxsmx5s1xmz7"; depends=[abind Morpho raster rgdal RNiftyReg sp]; }; patternplot = derive2 { name="patternplot"; version="0.1"; sha256="1k167vfwizwk6m0qpq9p0wq7y2g9ib6wi9j64wmvpqjw8k77l00r"; depends=[dplyr ggplot2 gtable jpeg png Rcpp RcppParallel]; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; - pavo = derive2 { name="pavo"; version="1.1.0"; sha256="0n4jk8dy5ydrdxmvigawfjpng4l7dq9ay4lassbg9qgc260cd45a"; depends=[geometry mapproj rcdd scatterplot3d]; }; + pavo = derive2 { name="pavo"; version="1.3.0"; sha256="0jp9k2wszzzwzn9bgxikv58mqxvxswi2hkzqr270vidc71qyngy8"; depends=[geometry mapproj pbmcapply rcdd]; }; pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; pawls = derive2 { name="pawls"; version="1.0.0"; sha256="01sf1cmd216ca5iwmw4hfnxi9lvh16r441cfcaa3n77zhq0i4w7n"; depends=[]; }; pbapply = derive2 { name="pbapply"; version="1.3-3"; sha256="0iqhymf65jffh00qf056h1p76xf92bfmij6aymlmgnvn24fv4ybk"; depends=[]; }; @@ -8437,7 +8611,7 @@ in with self; { pcaPP = derive2 { name="pcaPP"; version="1.9-72"; sha256="0i2822bv86dpqmk3q17x61nsp3gjjnn4nr8191rwvbiib7xhpgaq"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="3.0.4"; sha256="031ql3xppjkqrm17bvccj61hyf38skjb4qv6rs0l1h2ib8jql8ka"; depends=[ggplot2 MASS robust vcfR]; }; pcalg = derive2 { name="pcalg"; version="2.5-0"; sha256="002y7b0r750nbnrg8w53q2fyvk13jk4jrqlf3f2777qw7si5vmz3"; depends=[abind bdsmatrix BH clue corpcor dagitty fastICA ggm gmp graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; - pcdpca = derive2 { name="pcdpca"; version="0.2.1"; sha256="0vl661pjlfcgqmnw3c1032aci4akld1pqxchb2fh8y5wap1nhypa"; depends=[fda freqdom]; }; + pcdpca = derive2 { name="pcdpca"; version="0.4"; sha256="0ys4hrin0w3f87d1d986wvrfkfwapzj9hz7d7v92r60ns74g7r5m"; depends=[fda freqdom]; }; pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; pcev = derive2 { name="pcev"; version="1.1.1"; sha256="0vhn5514dnmhv98bchvsfd6pfjmvbc7hhb9zabgf8syk9rh8y9h8"; depends=[RMTstat]; }; pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; @@ -8454,7 +8628,7 @@ in with self; { pdfetch = derive2 { name="pdfetch"; version="0.2.2"; sha256="0nr34c7iyv2gbxrdbpkk43b61c7g9z85kgzahzq1wcx08x49bpxs"; depends=[curl httr jsonlite lubridate readr reshape2 XML xml2 xts zoo]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.1.1"; sha256="0k62j6ilv8rmmmasqyb3hklhjqg22jiyx0sxd7f8n0xmlfcjgfqi"; depends=[pdftools tibble]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="1.3"; sha256="0gaf51xfv56idw49pf9l0yzgncwmwxhg4idmbpj6xyzdbjdmr6hz"; depends=[Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="1.4"; sha256="0qm90dq1cjn57csvmls9yznpb7bb0w986990kwwh21i9pkl9rc3n"; depends=[Rcpp]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0"; sha256="1czpaghp2lcad4j6wxswdfw0n9m0phngy966zr4fr3ciqpx3q129"; depends=[mco]; }; pdolsms = derive2 { name="pdolsms"; version="0.2"; sha256="18gwr1xnm7jbqna911b7haa9sv1i2qvq18w00dkbnj796rh0h78f"; depends=[reshape2]; }; @@ -8488,6 +8662,7 @@ in with self; { pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; }; perccal = derive2 { name="perccal"; version="1.0"; sha256="1akak068d0g70amj5sbvnqbywzy21l4wz11mhp71b7cp4xmr9n12"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + perccalc = derive2 { name="perccalc"; version="1.0.0"; sha256="0327jj67gqq05a6fd5iac3b47ch7mgslalk4hr92v6svh8cz4syv"; depends=[broom devtools dplyr ggplot2 haven magrittr MASS multcomp purrr tibble tidyr tidyverse]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; perm = derive2 { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; }; @@ -8500,7 +8675,7 @@ in with self; { permute = derive2 { name="permute"; version="0.9-4"; sha256="1w8wzk1fg9q7wvisnfp2js70dg0m9wi12gkdhpyngpbdcgssahd5"; depends=[]; }; perry = derive2 { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; }; persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; - personalized = derive2 { name="personalized"; version="0.0.2"; sha256="1p7hs9fg8xbxmpj9xmjkcvzk5v527zzbka9dni40pvcsw8419r31"; depends=[gbm ggplot2 glmnet mgcv survival]; }; + personalized = derive2 { name="personalized"; version="0.1.0"; sha256="1xdiddzifaqfsm6pr477whj09i549jd9qzvn3vag5plc276vsv2g"; depends=[foreach gbm ggplot2 glmnet mgcv plotly survival]; }; personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; }; perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; perturb = derive2 { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; }; @@ -8532,7 +8707,7 @@ in with self; { phenmod = derive2 { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; pheno2geno = derive2 { name="pheno2geno"; version="1.3.1"; sha256="1k1hw5qxrwxy502zkcfcz0nxjqmvdk1fgghjc512vq7x5znblz3v"; depends=[mixtools qtl VGAM]; }; - phenology = derive2 { name="phenology"; version="5.4"; sha256="0i528yhmlyyinczhkymchhmmmd9x6xm94i2dnad834jcdhhhr44y"; depends=[HelpersMG lmf numDeriv optimx]; }; + phenology = derive2 { name="phenology"; version="6.0"; sha256="0r7h7rg3dl2c1gz6vmy89sw1sdcikav1aj6i8qwmslgjwd1qh6ci"; depends=[HelpersMG lmf numDeriv optimx]; }; phenopix = derive2 { name="phenopix"; version="2.3.1"; sha256="1yy163nh2b74m0v7f2gkgxaplvw4whs2h30bkw4chl0zyrcrci86"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster SDMTools sp stringr strucchange zoo]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; philentropy = derive2 { name="philentropy"; version="0.0.3"; sha256="00fpbmxg8m8apjb6cdrhh9rw3vp1j65ccvsqj1xlfcn1x5l1h3h8"; depends=[dplyr KernSmooth Rcpp]; }; @@ -8540,8 +8715,8 @@ in with self; { phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; }; - phonics = derive2 { name="phonics"; version="0.7.4"; sha256="0s5v9w3dcscjc7snv4nlhd4zm2dhxwv9jp6xaxp5wpwys5mim1ms"; depends=[BH Rcpp]; }; - photobiology = derive2 { name="photobiology"; version="0.9.16"; sha256="1s79ysx3lx194a06c9j9qqqa08f91kmy8hbv5ik5lg6fal3lkam5"; depends=[caTools dplyr lubridate plyr polynom splus2R tibble]; }; + phonics = derive2 { name="phonics"; version="0.7.5"; sha256="0llwn0ws5g0ri6bywj5jkx67954xil8w666nhy9jwnx0jzpa0cf2"; depends=[BH Rcpp]; }; + photobiology = derive2 { name="photobiology"; version="0.9.17"; sha256="02xk0vpcfmwsr8h2yjgp5lh6rlzv26yz14r78z686g02hpzcf0d8"; depends=[caTools dplyr lubridate plyr polynom rlang splus2R tibble]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.13"; sha256="1zagvdaiv8d5frwki20wwvbyw4a9in3k8560janbmd161xh13ii0"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate pavo photobiology readr readxl reshape2 tibble]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.2"; sha256="0m8bwpvr3g0xdcpjg0pm5qp7b941y85gdzw24vc1nhfmzwd0lxn0"; depends=[photobiology]; }; photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.4.1"; sha256="19pzb12qisv5hy7rps0dp9bq8zanpyr2yn41i6rd8hk80fknjha6"; depends=[photobiology]; }; @@ -8551,8 +8726,9 @@ in with self; { phreeqc = derive2 { name="phreeqc"; version="3.3.10"; sha256="0hcdjj1wgfknqf5yx50b9vz5f72siw4dslyvk2xbrfnwbzzz4qib"; depends=[]; }; phtt = derive2 { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; + phuse = derive2 { name="phuse"; version="0.1.4"; sha256="04q9aylm8k7yahsv19d2b1xd0lqr5iab55in45sa51nz93d3bs45"; depends=[git2r RCurl shiny yaml]; }; phybreak = derive2 { name="phybreak"; version="0.2.0"; sha256="0vapc0w308wv1cd72p2xbj3q7jfnxwp08g5g8855a38pcn3njbfg"; depends=[ape phangorn Rcpp stringr]; }; - phyclust = derive2 { name="phyclust"; version="0.1-19"; sha256="109m7q393xv17x4rhcxvhz25x42c79smw9xr8zppmkqdzx6f75w0"; depends=[ape]; }; + phyclust = derive2 { name="phyclust"; version="0.1-20"; sha256="0i1rhq54p9069z1ms60dfg6jvmmn5rc0ni6sxxkdm1p3n72zrl1f"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; phylin = derive2 { name="phylin"; version="1.1.1"; sha256="1hxmh5jgcz41bhmi8kvimw0b6m4p3yq85bh79hl7xbx2kshxmvzq"; depends=[]; }; phyloTop = derive2 { name="phyloTop"; version="2.0.1"; sha256="1mwifnmq4zk83vj7886ndz6i3xa9dyxsz9p4b0ah53cdvbcqcspd"; depends=[ape igraph NHPoisson phylobase]; }; @@ -8586,6 +8762,7 @@ in with self; { pingr = derive2 { name="pingr"; version="1.1.2"; sha256="17fh2gjlmwy6wy8i24q76fivjig8jm05g9kvfz81q0h6b5zxnpmg"; depends=[]; }; pinnacle_API = derive2 { name="pinnacle.API"; version="2.0.9"; sha256="1pq7q2wa4g8gxbyiascygnng53ihwmf5hsazwbyzjqgyyhi0hd9m"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; }; pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; }; + pinp = derive2 { name="pinp"; version="0.0.2"; sha256="1d4csr3ida6srw4ykbggka766j25kb2d450nhbschrgp345g81ra"; depends=[knitr rmarkdown]; }; pinyin = derive2 { name="pinyin"; version="1.1.0"; sha256="15zv8rqz61a52pv47b0cdmmnm8ynb30ypyki7dprpdidrz3mhk8m"; depends=[]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.2"; sha256="1p014fw3lxaspcmb3qgirz815ykycjh5r4ql59pi46ryxharn19j"; depends=[]; }; @@ -8596,12 +8773,12 @@ in with self; { pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; piton = derive2 { name="piton"; version="0.1.1"; sha256="1265y4lv2m5nwrh25sahjkxwmivpxgh9shrdidlmaman7zs6cclr"; depends=[Rcpp]; }; pivottabler = derive2 { name="pivottabler"; version="0.3.0"; sha256="0r72j3pp66ph19z16l1hx7b1xa8z8q2dndd4wg36pq7b93j8rr3p"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; }; - pixiedust = derive2 { name="pixiedust"; version="0.7.5"; sha256="07jrr20ch96dq09gbmmk63f7i44lydq1h0h2lryby8pnkz452nhf"; depends=[broom checkmate dplyr Hmisc htmltools knitr lazyWeave magrittr stringr tidyr]; }; + pixiedust = derive2 { name="pixiedust"; version="0.8.1"; sha256="1cpxsh3y9k66mkmks7mn3q4zjix1i8jc0dl62wrwwsp379vxcc3r"; depends=[broom checkmate dplyr Hmisc htmltools knitr magrittr scales stringr tidyr]; }; pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.1.4"; sha256="0c44zrvpyz87s5mjhsqdrkyrvyzhyldnq371bwnn9crbpbac3wnd"; depends=[]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.1"; sha256="0h2sp93fqqjbfqgq82a3i94ybnndx6ghaal8pbf99firnsjb40mb"; depends=[]; }; pkgcopier = derive2 { name="pkgcopier"; version="0.0.1"; sha256="04vpjf8nvqnpry54f1wwrnmipd5m6gqd89c3vkryqx88jk85jd8s"; depends=[httr stringr]; }; - pkggraph = derive2 { name="pkggraph"; version="0.2.0"; sha256="1mb6vr177xvm3s00c9s7g4ilqz5ln0fv8jyjzrb0pkjm94f6l0vf"; depends=[curl dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 RColorBrewer tibble]; }; + pkggraph = derive2 { name="pkggraph"; version="0.2.2"; sha256="0pzqlim84b22ahq5yr50ybffqa0f5k5ch372v37nw1ndzci211d8"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.22"; sha256="0vrqnd3kg6liqvpbd969jjsdx0f0rvmmxgdbwwrp6xfmdg0pib8r"; depends=[codetools digest registry stringr xtable]; }; pkmon = derive2 { name="pkmon"; version="0.9"; sha256="1zcjz1h45qv81rwnjsgc9iwmrwpnsy917y7h66pz98wzszlxcsd2"; depends=[]; }; pkr = derive2 { name="pkr"; version="0.1.1"; sha256="0mwrpkmf016lpwkjhhjpq7bw18mvshpyhwgmgqfrfl9gfbq4gphd"; depends=[binr foreign forestplot]; }; @@ -8613,7 +8790,7 @@ in with self; { plan = derive2 { name="plan"; version="0.4-2"; sha256="0vwiv8gcjdbnsxd8zqf0j1yh6gvbzm0b5kr7m47ha9z64d7wxch6"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; planor = derive2 { name="planor"; version="1.3-7"; sha256="01qlfv33adf3qyg6yzpigr4mm891xix39z8nkfz5d9q9iyx6fmx6"; depends=[bit64 conf_design Rcpp RcppArmadillo]; }; - plantecophys = derive2 { name="plantecophys"; version="1.2-9"; sha256="021g81ianfpvrf6w6azblrmdrd7c1jklh0wjk0b5vxzla10dnfjd"; depends=[]; }; + plantecophys = derive2 { name="plantecophys"; version="1.3"; sha256="0paqank2n262iizs09k40d3za2b81knnifj7y6pr2s33crbkm9qx"; depends=[]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; plater = derive2 { name="plater"; version="1.0.1"; sha256="0v5b9r6iha18qvrjpbr1p8fy06nf31x63ch5cnb4axyqa0x5skpp"; depends=[dplyr]; }; platetools = derive2 { name="platetools"; version="0.0.2"; sha256="0xan3h3djhgjbqn8f7yzlkm25l0fzq86zhb5xwfib4yajnb2dspa"; depends=[dplyr ggplot2 plyr RColorBrewer]; }; @@ -8629,7 +8806,7 @@ in with self; { plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; pln = derive2 { name="pln"; version="0.2-1"; sha256="09zg7zwmmqpjr1j59lqsjf4blrkya9wfwddgzfm9rr5jxrzvqcv8"; depends=[]; }; plogr = derive2 { name="plogr"; version="0.1-1"; sha256="13zliqlbkl8b04k9ga0sx5jsh7k867gracgl84l2a9kcqy9mqx92"; depends=[]; }; - plot3D = derive2 { name="plot3D"; version="1.1"; sha256="1xy4h9k1ddz040ns7dfqqckkmb165f2h4xfz44h8lfwazr59dzgg"; depends=[misc3d]; }; + plot3D = derive2 { name="plot3D"; version="1.1.1"; sha256="0chn70fqwyca8lbnjnpbcj08ni0dfbax2gjmzhk2c4w72c04mzpn"; depends=[misc3d]; }; plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.1"; sha256="12p4qc9vmhr86ssx6xnz3cmx84q5jgd28bw9dp4wjrn04n6l4va6"; depends=[plot3D rgl]; }; plotGoogleMaps = derive2 { name="plotGoogleMaps"; version="2.2"; sha256="0qv57k46ncg0wrgma0sbr3xf0j9j8cii3ppk3gs65ardghs3bf6b"; depends=[lattice maptools raster rgdal sp spacetime]; }; plotKML = derive2 { name="plotKML"; version="0.5-8"; sha256="0rd9242li967w253xhfywg72d3v1n5dybjxldkjgdix17gddwn5k"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; @@ -8637,7 +8814,7 @@ in with self; { plotMElm = derive2 { name="plotMElm"; version="0.1.4"; sha256="17fif2rqsf4f9jr4s7nr7wikwg63nibz6yjkldf7yh1qqqfikd2g"; depends=[ggplot2 interactionTest]; }; plotROC = derive2 { name="plotROC"; version="2.2.0"; sha256="08dszp08mvw7lpvznlq3xw5bayl05lmnf4v2pmy5snyyxd9zsv4x"; depends=[ggplot2 gridSVG plyr shiny]; }; plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; - plotfunctions = derive2 { name="plotfunctions"; version="1.2"; sha256="1kc551501f0j13z0i49hq9na1jzzjx65vw39fj3kasm8dww2npkl"; depends=[]; }; + plotfunctions = derive2 { name="plotfunctions"; version="1.3"; sha256="0cnmwkfjg45187j490sf01gxijhajrpi6j13hfckli2ysn6xrgz3"; depends=[]; }; plotluck = derive2 { name="plotluck"; version="1.1.0"; sha256="0arbvldg50lyn98vkrys1yjkkraz8jracwal4r2mlw991pnaikpp"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; plotly = derive2 { name="plotly"; version="4.7.1"; sha256="0wj9lw7w28z8w9ip9vadv6sydjhqyg65kfiai9m3bndzz50b1m3w"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr purrr RColorBrewer scales tibble tidyr viridisLite]; }; plotmo = derive2 { name="plotmo"; version="3.3.4"; sha256="1j2nc6n5kv6zvxwlr1cr1shxdcihw7d5k7z0a90phmdp834x8agy"; depends=[plotrix TeachingDemos]; }; @@ -8653,7 +8830,7 @@ in with self; { plsVarSel = derive2 { name="plsVarSel"; version="0.9.1"; sha256="0jwhdcrr68562q83528h7x3kjadfzn6j5l02axyfvflzgdnxwcnc"; depends=[bdsmatrix genalg MASS mvtnorm pls progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; plsdof = derive2 { name="plsdof"; version="0.2-7"; sha256="1z8z9m0nsnyy1fipzvm1srpxn3q6wjrlivmmki1f8plwkixkyc5y"; depends=[MASS]; }; - plsgenomics = derive2 { name="plsgenomics"; version="1.3-2"; sha256="1ihy4jp0hwi5v0s123ckbl0y6j8zhxh1im5sk46h1fdprfi5hxsa"; depends=[boot MASS]; }; + plsgenomics = derive2 { name="plsgenomics"; version="1.5-1"; sha256="0d2k3h2cwwhcv7mbxqypd7g6yp1l6j32n3wslm348zmcx50j9pn4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plspm = derive2 { name="plspm"; version="0.4.9"; sha256="03aj1ffq11hh931dbkxy9ba74xyvzmr1ylrj4fw1rbryrwqg89v6"; depends=[amap diagram shape tester turner]; }; plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; }; plspolychaos = derive2 { name="plspolychaos"; version="1.1-1"; sha256="078arfv8z5nfrmsfi0n7hskmv394ysi6nhlskpy5cg37lqiwh0r1"; depends=[lhs MASS]; }; @@ -8711,18 +8888,19 @@ in with self; { polysat = derive2 { name="polysat"; version="1.7-2"; sha256="0ahx2pvlv2vdfiskwgawcrp447249ha0dq4qkhav3hpyvdg3in38"; depends=[]; }; polywog = derive2 { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomp = derive2 { name="pomp"; version="1.14"; sha256="0zi1hahx4g1jjbvrmn0d2ci2aijw9qd7fxy19d1n65hkfk131iqy"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; + pomp = derive2 { name="pomp"; version="1.15"; sha256="1cba1wj1af7rb3ng8lm1m7zbvcjspak4ppz36ix5hbs956mxi8ss"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; + pool = derive2 { name="pool"; version="0.1.1"; sha256="0dk89xgrhhgmiv1h5j2vn6w0d4srfgg19ns0mnp5p39s61bayij9"; depends=[DBI dbplyr dplyr later R6]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; pop_wolf = derive2 { name="pop.wolf"; version="0.1"; sha256="19n00xv47v9j7slvm2ykzlksjfwjzimf88b3nk0y0192c29sdc9x"; depends=[abind]; }; - popEpi = derive2 { name="popEpi"; version="0.4.2"; sha256="1jngfvkds7mj3a72l1bi4c4mmcafgnxmbbrc4siwwp06skxhffvp"; depends=[data_table Epi survival]; }; + popEpi = derive2 { name="popEpi"; version="0.4.3"; sha256="0d3pfxi4ab2jijgj9h3wnjadl1mhg99bc1agyqjg9v6l1k34kbwb"; depends=[data_table Epi survival]; }; popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popRange = derive2 { name="popRange"; version="1.1.3"; sha256="0kkz6va0p8zv3skaqqcpw42014d9x9x4ilx0czz91qf46h61jgb0"; depends=[findpython]; }; popReconstruct = derive2 { name="popReconstruct"; version="1.0-4"; sha256="14lp0hfnzbiw81fnq7gzpr4lxyfh3g0428rm9jwjh631irz3fcc9"; depends=[coda]; }; popbio = derive2 { name="popbio"; version="2.4.3"; sha256="1c34izyp6gpic3yv1rhg1snv2irw0bj9r1w9b892l7x0mxxmn2bl"; depends=[]; }; popdemo = derive2 { name="popdemo"; version="0.2-3"; sha256="0r3qdvwjwqzqxk3zp9vfzxwmc5fhjzn0ka91b37g62nanwxiyayw"; depends=[expm]; }; poplite = derive2 { name="poplite"; version="0.99.17.3"; sha256="0fqkwxlzj92rh187wns7zrygsgch1gw3l8kmnpvc59gdbk1wbbi7"; depends=[DBI dplyr igraph lazyeval RSQLite]; }; - poppr = derive2 { name="poppr"; version="2.4.1"; sha256="05nds9srzkmdi33xfq3lfmyjirn8x3nacpkq1jymf6kzab0sgn8v"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn reshape2 shiny vegan]; }; + poppr = derive2 { name="poppr"; version="2.5.0"; sha256="18r89wdad8yja8jgdvispwx67ssj26yf2rdd1j4x0w9r3cpxxkmm"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn rlang shiny vegan]; }; popprxl = derive2 { name="popprxl"; version="0.1.3"; sha256="1l842zgn04s8ghbcp8s2lzg7lgc809xd7hg9crnyp23c2cr0jlvi"; depends=[poppr readxl]; }; popsom = derive2 { name="popsom"; version="4.2"; sha256="11d6z3qsq94k0557pnwa0h4pc718360lvg9jkblp8abnj52lcvvv"; depends=[class fields ggplot2 som]; }; poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; @@ -8734,15 +8912,16 @@ in with self; { postlightmercury = derive2 { name="postlightmercury"; version="1.2"; sha256="1345ckp50jplcdqp3a250c6mhapqh9322jzpxj5dyqmbg2nmgp9i"; depends=[crul jsonlite purrr rvest tibble xml2]; }; potts = derive2 { name="potts"; version="0.5-7"; sha256="194996wr4rnpr42xqfi5yrcnxvd82all2fxki95dklr2qfjxg98a"; depends=[]; }; powdist = derive2 { name="powdist"; version="0.1.3"; sha256="1j8i3nyr9xbs4acrqpblnqny5wj3ds59s1aayb3iv3z68pj2vz6j"; depends=[VGAM]; }; - poweRlaw = derive2 { name="poweRlaw"; version="0.70.0"; sha256="1p2la3hslxq2xa8jkwvci6zcpn47cvyr9xqd5agp1riwwp2xw5gh"; depends=[VGAM]; }; + poweRlaw = derive2 { name="poweRlaw"; version="0.70.1"; sha256="04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"; depends=[VGAM]; }; powell = derive2 { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; }; powerCompRisk = derive2 { name="powerCompRisk"; version="0.1.1"; sha256="0qsgibjzf6qx778s126c2k7nbf8f10gsh4cfkkhkxcv344rqxg10"; depends=[MASS mvtnorm]; }; powerEQTL = derive2 { name="powerEQTL"; version="0.1.3"; sha256="1045vkzl5p20mqlsm0j6vnyyvfz5v6jyy443c38sw1cps0a09i1n"; depends=[powerMediation]; }; powerGWASinteraction = derive2 { name="powerGWASinteraction"; version="1.1.3"; sha256="1i8gfsk9qzx54yn661i4x9k7n7b6r1jd808wv1hcq7870mzyb27k"; depends=[mvtnorm pwr]; }; - powerMediation = derive2 { name="powerMediation"; version="0.2.7"; sha256="1zqkwwlv57k5b86lcqjbdn11xgxayhsdqrq64n5pai8n4jxrkr5g"; depends=[]; }; + powerMediation = derive2 { name="powerMediation"; version="0.2.8"; sha256="1mfsap5li6limmr9pfv98wgsnx7a23abjx067vrvg0s5m03v52yi"; depends=[]; }; powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.0.9"; sha256="0f8i867zc1yjdp66rjb1cp92fcfrlq167z3d0c4iv355wv4s35az"; depends=[survival]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.3"; sha256="0dv4j0kwdzvxnq587vs1dsy2yci3v3q2smncpscpcsalp38rvx4i"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; + powerlmm = derive2 { name="powerlmm"; version="0.1.0"; sha256="0fsd3h94va5hn0nqxdalchw02s4daxq8dlgdxb5a4nigg64lfkm2"; depends=[ggplot2 ggsci gridExtra lme4 lmerTest MASS Matrix pbmcapply scales testthat]; }; powerpkg = derive2 { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; ppcc = derive2 { name="ppcc"; version="1.0"; sha256="022c8w7ws7fw6yy572rn6m8ki14d2ph7nd2hk2c6mmx2c4lbc20v"; depends=[]; }; @@ -8762,8 +8941,8 @@ in with self; { prc = derive2 { name="prc"; version="2015.6-24"; sha256="0sf664zqcq6xylhd7rvm2l2xj3f4j6llaj7j4b4847wfxnas2j02"; depends=[kyotil nlme]; }; prcbench = derive2 { name="prcbench"; version="0.7.3"; sha256="0xdmwjhxpcdaiqawhmlpr4ddlx22xk3rywa70jpm1vk5hc9pwivk"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; - prcr = derive2 { name="prcr"; version="0.1.4"; sha256="0yb0bi3kipq4r6g0fai2pb1gjxkd6gsjkf06irp2idx8r42ipl54"; depends=[dplyr ggplot2 tibble tidyr]; }; - pre = derive2 { name="pre"; version="0.3.0"; sha256="1jk99pribb1cs6rlfcs7iqvjzxyblqslh7mykcbkvh9anbipkcwa"; depends=[earth Formula glmnet MatrixModels partykit stringr]; }; + prcr = derive2 { name="prcr"; version="0.1.5"; sha256="1hfr0jijnj5nd25rh16i81bsz8kwz0q9vmn7bqgy467cwvypg9k2"; depends=[class dplyr ggplot2 irr lpSolve purrr tibble tidyr]; }; + pre = derive2 { name="pre"; version="0.4"; sha256="0az0dfmzfzin7zbbgqzg8y6f6dajj2y88dddlzy3rav580n3dvwg"; depends=[earth Formula glmnet MatrixModels partykit stringr]; }; preText = derive2 { name="preText"; version="0.6.0"; sha256="0cw74vix6cd6algadl8m8i236gvkhapkfjhra5y5cficvfzqbdgk"; depends=[cowplot ecodist ggplot2 proxy quanteda reshape2 topicmodels vegan]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; precrec = derive2 { name="precrec"; version="0.9.1"; sha256="0kppl4x8ji8hzll5wss1nzlk8qvf4g78f14x4c2b8dcxjikgl939"; depends=[assertthat data_table ggplot2 gridExtra Rcpp]; }; @@ -8772,9 +8951,10 @@ in with self; { predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; + predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.0"; sha256="08j9q46a0xq9z5n78zbk35745rv7ni2ymz500b02f04hl2x7wrrm"; depends=[caret forecast Metrics tseries TSPred]; }; prefeR = derive2 { name="prefeR"; version="0.1.1"; sha256="1wgbwbmghsnc2cargwndda0xhcdswvzd0nkjq5g895kl8zcwgpyf"; depends=[entropy mcmc]; }; preference = derive2 { name="preference"; version="0.1.0"; sha256="15h5p86sdp3xm4qpqr4kh54j57cxw534qk1lxn27m1vyp8rs280k"; depends=[]; }; - prefmod = derive2 { name="prefmod"; version="0.8-33"; sha256="0wklp3djy3z8lq0vrjrzqha6r8z00jwdm6d9ffyq5vhimmbirzj8"; depends=[colorspace gnm]; }; + prefmod = derive2 { name="prefmod"; version="0.8-34"; sha256="1fkqp75w3im6b0l4sfs1yr2id8ffp2xbpb6lkgnv833cri787d5x"; depends=[colorspace gnm]; }; prepdat = derive2 { name="prepdat"; version="1.0.8"; sha256="19rxyss96cmjhzm69f6l1cd3vkw3wskzhxnbmrz4546x00gf9g5v"; depends=[dplyr psych reshape2]; }; preprocomb = derive2 { name="preprocomb"; version="0.3.0"; sha256="08dhzil8prmjb6if0yba9pjncfxf5zzvlrrabva7c5jhny806c5g"; depends=[arules caret clustertend DMwR doParallel e1071 foreach randomForest zoo]; }; preprosim = derive2 { name="preprosim"; version="0.2.0"; sha256="1z10ranfal51vzsnndfaw5aqddh2w1xx8h50j1p7gx4fi90d0waq"; depends=[caret DMwR doParallel e1071 foreach ggplot2 reshape2]; }; @@ -8786,7 +8966,7 @@ in with self; { prettyR = derive2 { name="prettyR"; version="2.2"; sha256="026cgbrqs799lg06qlwx1r9ramil790qxrb1cyl4w7mzf8sfpgn9"; depends=[]; }; prettycode = derive2 { name="prettycode"; version="1.0.0"; sha256="1zba83b5sk8jyag8jz8gipn6qpxwfsfg1xcxamfvpmzjicajzhbx"; depends=[crayon withr]; }; prettydoc = derive2 { name="prettydoc"; version="0.2.0"; sha256="1zpvi4lyjazhj2h6m3j46x93s9c2300xqylaqy6gp1yjn9im36dp"; depends=[rmarkdown]; }; - prettymapr = derive2 { name="prettymapr"; version="0.2.1"; sha256="1839zhc4s9pkl6fq0jd613cbyrwj4a9h04r9c5ki3jkcwi3w80jq"; depends=[digest httr plyr rjson]; }; + prettymapr = derive2 { name="prettymapr"; version="0.2.2"; sha256="151jp0l728krmxcyzwjh01mvd1zhqijq0nsgjaqsh0q8n3jmndi0"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.0.2"; sha256="0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"; depends=[assertthat magrittr]; }; prevR = derive2 { name="prevR"; version="3.3"; sha256="11syifnv0mgbybsphgaj3a2j29p2q0l4y4w008n2r9s359arjj8m"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; @@ -8798,17 +8978,16 @@ in with self; { princurve = derive2 { name="princurve"; version="1.1-12"; sha256="19fprwpfhgv6n6ann978ilwhh58qi443q25z01qzxml4b5jzsd7w"; depends=[]; }; prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; printr = derive2 { name="printr"; version="0.1"; sha256="13yqqcwfqnbhvcxwrr6j45qhnbxng3qwn2ygkr809gibg9grw471"; depends=[knitr]; }; - prioritylasso = derive2 { name="prioritylasso"; version="0.2.0"; sha256="138yqpra00zs12bfj2lr1v8s3cmndl0q7fjv3s89ry2p84rlq8vr"; depends=[glmnet survival]; }; + prioritylasso = derive2 { name="prioritylasso"; version="0.2.1"; sha256="1wcykrhv1d762h7k7qkvnsjk7l6sincmh6vc6wmgpmmwx5nch70x"; depends=[glmnet survival]; }; prism = derive2 { name="prism"; version="0.0.7"; sha256="03z1m09vf2gd277xp3y5nhvgrp0fnbr2x0r9b92kp46ca09fq9y8"; depends=[ggplot2 httr raster]; }; prisonbrief = derive2 { name="prisonbrief"; version="0.1.0"; sha256="1fnhg6vqdabdnhvgd19vnkfrdgz8a53snfrx6m6mmdwb6cvavb8m"; depends=[data_table dplyr httr magrittr passport rlang rnaturalearth rnaturalearthdata rvest stringr tibble tidyr xml2]; }; pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; }; - prob = derive2 { name="prob"; version="1.0-0"; sha256="0gnp3q3dm176c1n7vdgisv3p11m2jk1hiza1yi8qaqyd9mfh86bg"; depends=[combinat fAsianOptions]; }; probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; probsvm = derive2 { name="probsvm"; version="1.00"; sha256="1k0zysym7ncmjy9h7whwi49qsfkpxfk7chfdjrydl6hn6pscis37"; depends=[kernlab]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; processcontrol = derive2 { name="processcontrol"; version="0.1.0"; sha256="0c0bksgq24blfkdgp5bn49sjnaajrg5bag8qzb5zffxbhnm4s30x"; depends=[plyr]; }; - processmapR = derive2 { name="processmapR"; version="0.1.0"; sha256="0ng48vwjsn1kmviyz41v1x4d3wd4bwycyfim079hs6adf0wq6vys"; depends=[bupaR DiagrammeR dplyr edeaR ggplot2 ggthemes]; }; + processmapR = derive2 { name="processmapR"; version="0.2.0"; sha256="02gj8h30bmz02qhr2xw6b72sa872cn57blszhw1llfmk7ml1zys2"; depends=[bupaR data_table DiagrammeR dplyr edeaR ggplot2 ggthemes glue miniUI purrr shiny stringr]; }; processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; processx = derive2 { name="processx"; version="2.0.0.1"; sha256="0yw23lp9xjvbpswzghkmjiayw7p19hbvmgv58k3i6b8g5nav4qcg"; depends=[assertthat crayon debugme R6]; }; prodest = derive2 { name="prodest"; version="0.1.1"; sha256="1j8gqxswwvnd45givadlvblnsc3qli228gz77d7alc19qf1wrrvz"; depends=[DEoptim dplyr Matrix Rsolnp]; }; @@ -8834,9 +9013,9 @@ in with self; { propOverlap = derive2 { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; propagate = derive2 { name="propagate"; version="1.0-4"; sha256="18vyh4i4zlsmggfyd4w0zrznk75m84k08p1qa9crind04n5581j1"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-8"; sha256="1x7zln1indckl090p9kv40snamkac3b8q45387jdqxajmsallxmb"; depends=[]; }; - prophet = derive2 { name="prophet"; version="0.1.1"; sha256="1knkkm3ai91rcak5c5199gjqazq3db8202knk7b846w0n4f77hn3"; depends=[dplyr extraDistr ggplot2 Rcpp rstan scales tidyr zoo]; }; + prophet = derive2 { name="prophet"; version="0.2"; sha256="1v8jznwy0158mpaym5a98d088zsrcaa1qfbqbqcdjzv0lv9wn0rr"; depends=[dplyr extraDistr ggplot2 Rcpp rstan scales tidyr]; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; - propr = derive2 { name="propr"; version="3.0.6"; sha256="1mnx6x0mmqbjj312jrr3nyl1lv7m765nla344wnliaaxwzkylgf9"; depends=[fastcluster ggplot2 igraph Rcpp]; }; + propr = derive2 { name="propr"; version="3.0.7"; sha256="0asp57f6z0v4qlngd84x0h72y3sc6j50yhxh0nxn47ngcxa0z07h"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.2.31"; sha256="05bmxc5hq2bpd8saqs36wwkmbywkw7rm3b4zl1dxpdpxmywsbf1a"; depends=[Rcpp]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; @@ -8845,7 +9024,7 @@ in with self; { proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; protoclust = derive2 { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; }; - protolite = derive2 { name="protolite"; version="1.6"; sha256="10ly0rscpmgdakzlr27h6d78d6ixvrh76xcyx68caffr3zydlfyq"; depends=[jsonlite Rcpp]; }; + protolite = derive2 { name="protolite"; version="1.7"; sha256="002vncki8r33z9k208h19q90jwjy3d58fk3xzkh6cbsv4hgay9g0"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.1"; sha256="0v65abrn73wgwnrrf6gv9f7p0qy12xlk9ishq9lq4qal1wlsrrjs"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; protr = derive2 { name="protr"; version="1.4-1"; sha256="01ly3908j4biabn9nwx2pfjsidgyf9zw8p50pd5342r0rvmg79dy"; depends=[]; }; @@ -8856,9 +9035,10 @@ in with self; { pryr = derive2 { name="pryr"; version="0.1.2"; sha256="1in350a8hxwf580afavasvn3jc7x2p1b7nlwmj1scakfz74vghk5"; depends=[codetools Rcpp stringr]; }; psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; psbcGroup = derive2 { name="psbcGroup"; version="1.4"; sha256="0l1hmgw4sislryws8hv7r2nglhcs6g9khg0372a70djvhz2l6gfi"; depends=[LearnBayes mvtnorm SuppDists]; }; - pscl = derive2 { name="pscl"; version="1.4.9"; sha256="15fij6n43hry1plgzrak9vmk9xbb7n4v2frv997bhwxbs6jhhfhf"; depends=[lattice MASS]; }; + pscl = derive2 { name="pscl"; version="1.5.1"; sha256="1905467qwd2jhc7cfrshpffj65vi0vsfnsg4pshpv68hs12924w3"; depends=[MASS]; }; pscore = derive2 { name="pscore"; version="0.1-2"; sha256="1sfkxs2kv8lq87j3q9ci7j38c7gzfkp2l36lwcdhiidr2nls2x0c"; depends=[ggplot2 lavaan reshape2]; }; psd = derive2 { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a84fq4yhp472n4k8wd73mkdn6"; depends=[RColorBrewer Rcpp RcppArmadillo signal zoo]; }; + psda = derive2 { name="psda"; version="1.0.0"; sha256="0zsvm6rqcxv186xbi8nqd4ak93lhrm1hp7339cks140vdp8yl7ys"; depends=[ggplot2 plyr raster rgeos sp]; }; pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; pseval = derive2 { name="pseval"; version="1.3.0"; sha256="1iv3fa7ar9i7v9j5axbasmn8l8nvry4zvmb7fd8aql82f22szmbj"; depends=[survival]; }; @@ -8871,7 +9051,7 @@ in with self; { pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; - psych = derive2 { name="psych"; version="1.7.5"; sha256="0mzzd9qj57qn5cnmd3w31gyp7big70pyx7nkxiqv1q0ys3sg6i25"; depends=[foreign lattice mnormt nlme]; }; + psych = derive2 { name="psych"; version="1.7.8"; sha256="0daismb8pdk392vdy304hqx0m3jx62gx3a0hygjygc125rhfla7k"; depends=[foreign lattice mnormt nlme]; }; psychmeta = derive2 { name="psychmeta"; version="0.1.0"; sha256="0xrw24d09imzhh4r2dpby4ps10d211yp8nfixvi04pjhk8dz16j4"; depends=[boot dplyr ggplot2 MASS metafor reshape2 tibble tmvtnorm]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-4"; sha256="15yk3z11w4bzk6vljr13bkfhzycypww6blc1djb5iwl635xq1c49"; depends=[flexmix Formula lattice modeltools psychotools]; }; @@ -8885,7 +9065,7 @@ in with self; { ptw = derive2 { name="ptw"; version="1.9-12"; sha256="111b0s66p7fk6z6bnm3wckpfjxr1gshv0rqqy5wy6qg60hp7bcfd"; depends=[nloptr]; }; ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; - pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.10"; sha256="0q4miancvvb7c3l9m9k1ij623k1f4h84zihgafvib5xy5mhzb312"; depends=[boot R2HTML RCurl XML]; }; + pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.11"; sha256="01b4dd28x3a25d0s8k0dwbcr6asaqh2b9c4fddg683i54q483lkd"; depends=[boot R2HTML RCurl XML]; }; pubprint = derive2 { name="pubprint"; version="0.2.1"; sha256="0lcav93i4lw0j491q8ga47iyski2kvmqvppq0jwa3144zfb3hnic"; depends=[stringr]; }; pullword = derive2 { name="pullword"; version="0.2"; sha256="14rln0nbd4k2cvf18iwvc56776b9g3m3cs67i7fgzabfrgj8y6db"; depends=[RCurl]; }; pulsar = derive2 { name="pulsar"; version="0.2.5"; sha256="1qmyhj32dygnvqvjysvlhlxv9y8lyfnm8hzaycmh8g3lhymk2k9c"; depends=[Matrix]; }; @@ -8921,16 +9101,18 @@ in with self; { qcc = derive2 { name="qcc"; version="2.7"; sha256="0lc26w7p3d023lfr8v6v75m2vwqg9vi9pdipap19l4vbdq29l4zz"; depends=[MASS]; }; qclust = derive2 { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; }; qcr = derive2 { name="qcr"; version="1.0"; sha256="1251naica44kccmikyzdi3ncxfmvyqbc4qspfqnc0w54cqpsy5rw"; depends=[fda_usc MASS mvtnorm qcc qualityTools]; }; - qdap = derive2 { name="qdap"; version="2.2.5"; sha256="13isxmi9vknl5c71434r16j301i86zpbzcqch8hiay51x3wbf2f0"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; + qdap = derive2 { name="qdap"; version="2.2.8"; sha256="1fxkfxhsxjbgicb065vldjpfwvz5m5cbgc5yn6n3i8bybw68wp2w"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; qdapDictionaries = derive2 { name="qdapDictionaries"; version="1.0.6"; sha256="1icivvsi33494ycd7vfqm9zx2g2rc1m3dygs3bi0ndi798z1cvx2"; depends=[]; }; qdapRegex = derive2 { name="qdapRegex"; version="0.7.2"; sha256="1xa8q1way3gjadrjh3mv3xr4c6b4h16nd2c6lgl969difplpfz9p"; depends=[stringi]; }; qdapTools = derive2 { name="qdapTools"; version="1.3.3"; sha256="0a28jn57d2fas3009cm10z07fq77ql3ffcrhcxsiimb57179wj0n"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.0"; sha256="067wnwwz8s0yxig13wrjq37w62kf8p5pa8my5lfpc1ik1b7iysby"; depends=[Rsolnp]; }; - qgraph = derive2 { name="qgraph"; version="1.4.3"; sha256="1ymgi1ls2q22rwx1hv3h6flgfjx5l2dbmzh804jlq68wh8xf496j"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; + qgam = derive2 { name="qgam"; version="1.1.1"; sha256="15f2c0n4j8q1vgd3hi2q7lmf78a3zxi5a01p0lq0916jms08lk27"; depends=[doParallel mgcv plyr shiny]; }; + qgraph = derive2 { name="qgraph"; version="1.4.4"; sha256="0hgqjf5ljyrni0ifkq9x0ninyqwsaqd9z9i4d4phrww586590apn"; depends=[BDgraph colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; - qicharts = derive2 { name="qicharts"; version="0.5.4"; sha256="0lq9faksp18mgb6pa7qhbm9frd6f4675623d797snvnm67aiy8fa"; depends=[ggplot2 lattice latticeExtra scales]; }; + qicharts = derive2 { name="qicharts"; version="0.5.5"; sha256="0bl1f64b5n8q9jhzh3rqfyh9613qiy9mhcy2xsn16jyrj4hmj0jd"; depends=[ggplot2 lattice latticeExtra scales]; }; + qicharts2 = derive2 { name="qicharts2"; version="0.1.1"; sha256="16pjk3np2y3isd147f65islxmjwalrzgh91qgsd990xhdyf3kqcy"; depends=[dplyr ggplot2 scales]; }; qiimer = derive2 { name="qiimer"; version="0.9.4"; sha256="0argspi9pin2gjsg0qkl28hj3bw8svfab1cy410zlq76qdnmg7df"; depends=[pheatmap]; }; qiitr = derive2 { name="qiitr"; version="0.1.0"; sha256="1p0mcwgzvbib20l05wrnshkqx99vwr69dgy15dfwp75skyy5l797"; depends=[httr jsonlite purrr rstudioapi]; }; qlcData = derive2 { name="qlcData"; version="0.1.0"; sha256="00xfr7dywvadyhs2z32za06fzdzmm20sn31grin0b3xw5qndai0f"; depends=[stringi yaml]; }; @@ -8948,6 +9130,7 @@ in with self; { qrNLMM = derive2 { name="qrNLMM"; version="1.4"; sha256="0h1jra247flipv4pwww8rn61pj8jxpiaw74f2czs950klnznp1xm"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; qrcm = derive2 { name="qrcm"; version="2.1"; sha256="0wp6ynckh66gxi569wbvn5szwih4g0c21zrrpz3zfavhqwk7srgf"; depends=[pch survival]; }; + qrcmNP = derive2 { name="qrcmNP"; version="0.1.0"; sha256="0fhbycxzmz3bpr6y2i4aphqfclfriifrc8w10p8z10l8sabifrsx"; depends=[qrcm survival]; }; qrcode = derive2 { name="qrcode"; version="0.1.1"; sha256="12j0db8vidlgkp0dcjyrw5mhhvazl7v7gpn9wsf2m0qnz1rm4igq"; depends=[R_utils stringr]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; qrfactor = derive2 { name="qrfactor"; version="1.4"; sha256="0f02lh8zrc36slwqy11x03yzfdy94p1lk5jar9h5cwa1dvi5k8gm"; depends=[cluster maptools mgraph mvoutlier pvclust]; }; @@ -8962,7 +9145,7 @@ in with self; { qte = derive2 { name="qte"; version="1.2.0"; sha256="1l911z52v3jp0b2agvwfny8d4yq0llrdp873j4mw696x50awj8py"; depends=[BMisc formula_tools ggplot2 Hmisc quantreg texreg]; }; qtl = derive2 { name="qtl"; version="1.41-6"; sha256="067az4v432zxp6lxck8d7vlh9w4r13r0mvw5zsglyaqwsh3d9sad"; depends=[]; }; qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; - qtlbook = derive2 { name="qtlbook"; version="0.18-5"; sha256="0qvfi8q92n9pa3zbinkk54404m0awhxla9ccflczgaq0vij2n7wf"; depends=[qtl]; }; + qtlbook = derive2 { name="qtlbook"; version="0.18-6"; sha256="0kbz7icp6fzl2bgk50fcg8x704aijpz3xbqrzraj7qa3z8gakaj6"; depends=[qtl]; }; qtlc = derive2 { name="qtlc"; version="1.0"; sha256="17ij4alx4qg556b5kq7qsjygj5jf8iyx1f0v52pvx1z2sm6nppww"; depends=[plot3D rgl tiff]; }; qtlcharts = derive2 { name="qtlcharts"; version="0.9-6"; sha256="021gx5qzrc7jbgpp91mn36czr7fsh37wf3c7cifcv3xwzc54j4dd"; depends=[htmlwidgets qtl]; }; qtlhot = derive2 { name="qtlhot"; version="0.9.0"; sha256="1043rksqqzgmr7q03j18wxgm706prqxq9ki9b9p2dxvc62vfcfih"; depends=[corpcor lattice mnormt qtl]; }; @@ -8978,12 +9161,12 @@ in with self; { qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-3"; sha256="1yyqk223ydcc0125gsn33a4mcdp8bd76fpn8kj9bfz9g78b8dqmx"; depends=[KernSmooth]; }; qualityTools = derive2 { name="qualityTools"; version="1.55"; sha256="1c2p78dhwqvzb2k01dvwb41a6hlr2iwpw6fv91036x30rphjzb88"; depends=[MASS Rsolnp]; }; - qualpalr = derive2 { name="qualpalr"; version="0.4.1"; sha256="0n2279ryx9x90c63dbk76rr473rj16x19l32vvm91r59ia2zl948"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; + qualpalr = derive2 { name="qualpalr"; version="0.4.2"; sha256="0lgg8r7w2fwd2nw8x3k876pyc9r3igqri57akc5fwi92gb8grj5b"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; qualtRics = derive2 { name="qualtRics"; version="2.0"; sha256="140scg03k2mzhadjsr85dm1z36a2g971iyypc2srh14gvd2w1n5l"; depends=[assertthat httr jsonlite lubridate sjlabelled stringr yaml]; }; qualvar = derive2 { name="qualvar"; version="0.1.0"; sha256="07vpq5nyh40y1sq1fsg97z7bbardqakq6bx635v42pv00480h9sh"; depends=[]; }; quantable = derive2 { name="quantable"; version="0.2.2"; sha256="179bqqrga8mpigchfmhf11sc75frhd9nd6yqclz85lnd6gl16yd7"; depends=[caret e1071 gplots Matrix pROC RColorBrewer scales]; }; quantchem = derive2 { name="quantchem"; version="0.13"; sha256="1ga5xa7lsk04flfp1syjzpnvj3i2ypzh1m49vq1xkdwpm6axdy8n"; depends=[MASS outliers]; }; - quanteda = derive2 { name="quanteda"; version="0.99"; sha256="0w34nkga8xhs219501vh6ks8s09qr44i44n9w8z23y2g2k65va65"; depends=[data_table fastmatch ggplot2 lubridate Matrix Rcpp RcppArmadillo RcppParallel RSpectra SnowballC stringi wordcloud XML yaml]; }; + quanteda = derive2 { name="quanteda"; version="0.99.9"; sha256="0rln64zykl4mwm7zs0jqkbrh9m7vafwdh6kyiylgw5vv3i7h06gm"; depends=[data_table fastmatch ggplot2 lubridate magrittr Matrix Rcpp RcppArmadillo RcppParallel RSpectra SnowballC stringi wordcloud XML yaml]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantmod = derive2 { name="quantmod"; version="0.4-10"; sha256="12v83w2q8agvwwrjg9xwpamxmnqjays5xw51lhgbmnksasm40003"; depends=[curl TTR xts zoo]; }; @@ -9009,7 +9192,7 @@ in with self; { quipu = derive2 { name="quipu"; version="1.9.0"; sha256="1py1qpbwp2smr5di8b3zmzxxhchfmr5qfhqkdiqig28mcnqcmp5n"; depends=[agricolae pixmap shiny stringr xtable]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.0"; sha256="1wnzcywrahcf2wwxnwqfxbfmrhzlq2ghfzbhs10gj9nsbbp1l0ch"; depends=[]; }; qut = derive2 { name="qut"; version="1.2"; sha256="1w6zsjphzfb1gby21cq20j8cclj15xklwga821sj07x3nchgn421"; depends=[flare glmnet lars Matrix]; }; - qvcalc = derive2 { name="qvcalc"; version="0.9-0"; sha256="0gccxl6l6ibffxkjzfmh2scm8f3bnqwm1hr7ss7dqshhxw21kd5c"; depends=[]; }; + qvcalc = derive2 { name="qvcalc"; version="0.9-1"; sha256="1ll71yww8rsbp0qa60w7vdna8yk60cq66cjn5cdk3bkdwyni28yy"; depends=[]; }; qwraps2 = derive2 { name="qwraps2"; version="0.2.4"; sha256="18ail1y3kpiiwgkf7zn1acfz1ipz7wbk8pcmlganayr8p9yv7sh2"; depends=[dplyr ggplot2 knitr Rcpp tidyr]; }; r_jive = derive2 { name="r.jive"; version="2.1"; sha256="0l0bhhp6bdc84pzxi7gnsxx3scycw0zahrnc496wx3j43np9hlsg"; depends=[abind gplots SpatioTemporal]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; @@ -9033,9 +9216,9 @@ in with self; { rChoiceDialogs = derive2 { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; }; rClinicalCodes = derive2 { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; rDEA = derive2 { name="rDEA"; version="1.2-5"; sha256="1wsi2dkq9izvbhdqmd4qk8i277r1j38dk59fcmnxnwqvk6ar6nrb"; depends=[maxLik slam truncnorm truncreg]; }; - rDNA = derive2 { name="rDNA"; version="1.31"; sha256="051000q3wb9bjcwm3v60yfy1gpr6amvciy5sh498kl5vq7nv5wlv"; depends=[rJava]; }; rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDVR = derive2 { name="rDVR"; version="0.1.1"; sha256="19a4f9k65bd49vkn3sxkjdmcpwyawk7gwmvancvqr745gfgs0wzg"; depends=[RCurl]; }; + rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; }; rEDM = derive2 { name="rEDM"; version="0.5.4"; sha256="1vhhc1yfswvba6qfff5y9l96g8xjw0szshzs4hd4yxh6rq1bnjlr"; depends=[Rcpp RcppEigen]; }; rEMM = derive2 { name="rEMM"; version="1.0-11"; sha256="0ynjn10gcmxs8qnh6idb34ppmki91l8sl720x70xkzcqpahy0nic"; depends=[cluster clusterGeneration igraph MASS proxy]; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; @@ -9058,7 +9241,7 @@ in with self; { rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.8.7"; sha256="17vq8lapiviyibl1jm12a73qq98bgpnh7xp66jnv3lfksv9q3ck6"; depends=[plyr]; }; rLiDAR = derive2 { name="rLiDAR"; version="0.1.1"; sha256="1w0yi4ygw0l9ydbllqjylp30d401bsf7b6fng6qg3pssbi9v3kln"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; }; rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; - rMR = derive2 { name="rMR"; version="1.0.4"; sha256="1md0xkl87qqylwh5zbx9awa5i4f573v4glgaf4k8h5ls4icaaav4"; depends=[biglm]; }; + rMR = derive2 { name="rMR"; version="1.0.5"; sha256="18p2z2njb6j8pj7i1mdwl91qynwqmszy8pck02bdynzdag47wl6r"; depends=[biglm]; }; rMouse = derive2 { name="rMouse"; version="0.1"; sha256="0pzxasap5kwxqq36mb4zi139jllsl4vk06dw2pv9xnwdxiszr3gp"; depends=[rJava]; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; rNOMADS = derive2 { name="rNOMADS"; version="2.3.6"; sha256="007yha5ils7wdbld6id3gfgm99cks3vc64awammrv0kvq85c8g8k"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; @@ -9072,6 +9255,7 @@ in with self; { rSCA = derive2 { name="rSCA"; version="2.1"; sha256="1lpix8xsjzyhgksmigvqxpv2bvaka0b1q2kcvdyfrfcw713n19rw"; depends=[]; }; rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; rSPACE = derive2 { name="rSPACE"; version="1.2.0"; sha256="1nmv8niqc34mipzhny1mlwc9v4kck02ixmm1i25cqdfhsng03dma"; depends=[ggplot2 plyr raster RMark sp tcltk2]; }; + rSQM = derive2 { name="rSQM"; version="1.2.42"; sha256="0s4ncvrhxnpnxmrilsx6y57s00nc859b9czh08i6na1z31354cpj"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; rSymPy = derive2 { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.4"; sha256="0if18is64m3ka2dxfbj7vb1lbwwhn2hgfh3kdh7d47nr3z4ak7p0"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.3"; sha256="0ra34sn4g92r6asrn4la2wbsi2y0hnyx163wwi4v0j6f57bslhdw"; depends=[]; }; @@ -9107,6 +9291,7 @@ in with self; { randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; randgeo = derive2 { name="randgeo"; version="0.2.0"; sha256="056c522zw2x4ab7z2bpkw9byfn1gzsfavbjaxdgwi4n934f46h14"; depends=[]; }; + randnet = derive2 { name="randnet"; version="0.1"; sha256="1mpz3dsbzd5hffv2v5p6jdp0z07f7rhgcjinr1lwggvxw37xwrkj"; depends=[AUC entropy irlba Matrix poweRlaw RSpectra]; }; random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-2"; sha256="1ybwfn3hdwisxjn85vqrib1zhk8dcddbarbwjdf1vn27ih3c4h2c"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-12"; sha256="1i43idaihhl6nwqw42v9dqpl6f8z3ykcn2in32lh2755i27jylbf"; depends=[]; }; @@ -9141,7 +9326,7 @@ in with self; { rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarhsmm = derive2 { name="rarhsmm"; version="1.0.4"; sha256="0fc22sg4b3r1fjcmgc6kvpw1vxb29i8a1qlrkic8jmd1370dh61w"; depends=[glmnet]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; - rase = derive2 { name="rase"; version="0.3-2"; sha256="1c8navn518prz8j644bg1fzx8q1jgnl5src5kagq53ln7fs6jq73"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; + rase = derive2 { name="rase"; version="0.3-3"; sha256="03jqf5y5vj354m9psp81wzw6d7dfqr76bfjqv9kannsakkj587sy"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; raster = derive2 { name="raster"; version="2.5-8"; sha256="1k34caqj8fab7am44zmp1szk0w15rjc04xz3phzm2l1lg2yjm6a7"; depends=[Rcpp sp]; }; rasterImage = derive2 { name="rasterImage"; version="0.3.0"; sha256="0csx7wqwxdsddypd1c9wv74gcyymasn9n6pn05a35j6xhqbk2zp3"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; }; @@ -9153,7 +9338,7 @@ in with self; { ratesci = derive2 { name="ratesci"; version="0.2-0"; sha256="0gviaiia2jih6xx1maf9ajizmgh4vdbca4r17h9m817v3xn21y7b"; depends=[]; }; rationalfun = derive2 { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; }; ratios = derive2 { name="ratios"; version="1.1.0"; sha256="1nss6xfkm5axp8mld1aiqaygrmrwl2jn9k2476la2j3pla047xgm"; depends=[data_table stringr]; }; - rattle = derive2 { name="rattle"; version="4.1.0"; sha256="0ww4bwwvivpk049lpv6k29zxkb0islhwh2qnlrvasgh2b9yig25p"; depends=[magrittr RGtk2 stringi]; }; + rattle = derive2 { name="rattle"; version="5.1.0"; sha256="0xxf2wpazsk29y2byyk010n59vmzmhm4phpsqvklmsr1v3m10pvp"; depends=[cairoDevice dplyr ggplot2 magrittr RGtk2 rpart_plot stringi stringr tidyr XML]; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; }; raw = derive2 { name="raw"; version="0.1.5"; sha256="0w0k35izvsi8vwp38har4ygh1zxnz7hfla8d8fcbvckpfbkwpggp"; depends=[]; }; rbamtools = derive2 { name="rbamtools"; version="2.16.6"; sha256="1sb18qx68fnj1d598lw8fkqnxp3c5s704g6cnhwy299gppj3xg1d"; depends=[refGenome]; }; @@ -9169,6 +9354,7 @@ in with self; { rbmn = derive2 { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.0"; sha256="1lpbph6bhh9rf5rs0ivp8dchx8i8ylz5nr7xc2xv9bnwlwj35729"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; + rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; }; rbugs = derive2 { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; rbvs = derive2 { name="rbvs"; version="1.0.2"; sha256="1wzxz2ca8f1phhbqr9p7c8sk09cyrdq5jc45g4ddrqvi2q29k28y"; depends=[]; }; @@ -9217,6 +9403,7 @@ in with self; { rdrop2 = derive2 { name="rdrop2"; version="0.7.0"; sha256="03r3iqi796y7s8bnyca6nya2ys7s1rdxm00sy9c7l7sh0z6npcq4"; depends=[assertthat data_table dplyr httr jsonlite magrittr]; }; rdryad = derive2 { name="rdryad"; version="0.2.0"; sha256="16wbf0hpb4pgjcq84s7ac0y1cm5i33l8n6li5z8ynivdj9w9fb46"; depends=[httr oai solr xml2]; }; rdwd = derive2 { name="rdwd"; version="0.8.0"; sha256="1j5yz5qlf7xv722rh8qsbazksgs7mwv2s789lnlpr8cv127qfh8d"; depends=[berryFunctions pbapply]; }; + re2r = derive2 { name="re2r"; version="0.2.0"; sha256="0xv355h4bps4a0picxmi6i15niq4knlail80fp9xvszyn72pm8gq"; depends=[htmlwidgets Rcpp RcppParallel stringi]; }; reGenotyper = derive2 { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; reReg = derive2 { name="reReg"; version="1.0-0"; sha256="0xd78frrzykdrdwj39vv5m11s5v3xg9fym200gz7sffw8vjv3z96"; depends=[aftgee BB MASS SQUAREM survival]; }; reactR = derive2 { name="reactR"; version="0.1.2"; sha256="011ga8f72qq0ljqc7j0qvcbbr2jg167ri1yny65n55dls80flmng"; depends=[htmltools]; }; @@ -9238,7 +9425,7 @@ in with self; { readxl = derive2 { name="readxl"; version="1.0.0"; sha256="1bf7gxw9r11m4llyymplxiaa4gzgyj4bwmwad5in756pzq3jzmpv"; depends=[cellranger Rcpp tibble]; }; reams = derive2 { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; rebird = derive2 { name="rebird"; version="0.4.0"; sha256="1awwjr0gsd7hksh84fz5p17qwd857zn03fc2q0kzncy6q6iiw481"; depends=[dplyr httr jsonlite]; }; - rebmix = derive2 { name="rebmix"; version="2.9.2"; sha256="1vwral852bxb45ms7zvxd6q40ybnf8yjxklipzgw4ygk322mziww"; depends=[mvtnorm]; }; + rebmix = derive2 { name="rebmix"; version="2.9.3"; sha256="1dw1az7wzkhxcc8ixcmdxrlc4hzi2c4093brvj1m4z44mrw28vws"; depends=[mvtnorm]; }; rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; rebus_base = derive2 { name="rebus.base"; version="0.0-3"; sha256="1n2khszcya9k6379bdkq47xi2nw9jngiwj7z8a14wfswqydczv6y"; depends=[]; }; rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; @@ -9248,13 +9435,13 @@ in with self; { rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; recipes = derive2 { name="recipes"; version="0.1.0"; sha256="0rydk403qihxmcv3zz323r3ywk4g1v7ibvj452rxhm0z22sqk9kb"; depends=[ddalpha dimRed dplyr gower ipred lubridate magrittr purrr RcppRoll rlang tibble tidyselect timeDate]; }; recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; - recmap = derive2 { name="recmap"; version="0.5.20"; sha256="1ld3ifcn9rwgk4hiislmdkz73sdxagrbynq9x3mswjifx1hlqj6d"; depends=[GA Rcpp sp]; }; + recmap = derive2 { name="recmap"; version="0.5.24"; sha256="0ijs331f9x6r2qamx5b47x4wblz2pg7k5b7593hdwhiiwzh5c0ly"; depends=[GA Rcpp sp]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; recommenderlab = derive2 { name="recommenderlab"; version="0.2-2"; sha256="13mgkxrcwh5ry699my3w6xgm6rabsk9fd5qqsdwzy7cfq6xkq7cg"; depends=[arules irlba Matrix proxy registry]; }; recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; reconstructr = derive2 { name="reconstructr"; version="2.0.0"; sha256="1pa6b8zns9495f1bdifvx19hsy5808hqbxb2bn1srwnr4s3ma1zi"; depends=[openssl Rcpp]; }; - recosystem = derive2 { name="recosystem"; version="0.4.1"; sha256="1gnq2gq47qwinack3f95d7c8877qia44zk9pnj1sx83jjs8sxk8p"; depends=[Rcpp]; }; + recosystem = derive2 { name="recosystem"; version="0.4.2"; sha256="1bn6l23gqmfpr6w60ph7zgv53vy3vnq9zdy5x0a8n1yp6b0lw48x"; depends=[Rcpp RcppProgress]; }; red = derive2 { name="red"; version="1.2.0"; sha256="0g15yx1wk70ds3qadfzv2hkiyliwfgzc1h66klhqi1n4f8gsalcz"; depends=[BAT dismo geosphere jsonlite maptools raster rgdal rgeos sp]; }; redR = derive2 { name="redR"; version="1.0.0"; sha256="01safawd9ai34fqxjpc161yzpsk31hfyl8ybcfvdj7a9vdbvcb5i"; depends=[imager]; }; reda = derive2 { name="reda"; version="0.3.1"; sha256="0313x4vm0jm0lgzspv0ldsblmjgy13dqbsafpikkh603k5pkq1js"; depends=[ggplot2 splines2]; }; @@ -9276,6 +9463,7 @@ in with self; { regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; regclass = derive2 { name="regclass"; version="1.5"; sha256="0kha9b5ki55ggwh8cmlphg1alf1dq8if5dknisfbvd3f2x4dqf02"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; + regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; regexr = derive2 { name="regexr"; version="1.1.0"; sha256="1gjv4wl4gjsh5rr0kz057x9j4dhikrm3zzlmxlhd1f9srjdmcdzy"; depends=[]; }; reghelper = derive2 { name="reghelper"; version="0.3.3"; sha256="0lsdsxi3nawqdzs7k1xma95mmywl86k517cihiv8q2s4maihsja3"; depends=[ggplot2 lme4 nlme]; }; registry = derive2 { name="registry"; version="0.3"; sha256="0c7lscfxncwwd8zp46h2xfw9gw14dypqv6m2kx85xjhjh0xw99aq"; depends=[]; }; @@ -9284,7 +9472,7 @@ in with self; { regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; regress = derive2 { name="regress"; version="1.3-15"; sha256="1cgr0r49cmr8nzs2lr2cm8lli1i8azyas0lbnf1681kyab15c0r7"; depends=[]; }; regsel = derive2 { name="regsel"; version="0.2"; sha256="0wwwpawqsqimaldy0zxnqsy23nwp30ypa5dnrnndwhbs4qz99c9w"; depends=[elasticnet glmnet]; }; - regsem = derive2 { name="regsem"; version="0.8.1"; sha256="14y69n0br9dz40kppwhc47g46r0naqxvz03l9pf62idl9ivgkqsf"; depends=[lavaan Rcpp RcppArmadillo]; }; + regsem = derive2 { name="regsem"; version="0.9.2"; sha256="1xbqmsgw98hwwyx4cf9qsjhkwkzhv14fsnwb3jrmqmmcg97w4rwp"; depends=[lavaan Rcpp RcppArmadillo]; }; regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; }; regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive2 { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; @@ -9323,9 +9511,9 @@ in with self; { repijson = derive2 { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-1"; sha256="0q6mfrdjpx6nh4xgr5i7ka3xvnx9585xdhni020q4pm05rhimid2"; depends=[spatstat]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; - replyr = derive2 { name="replyr"; version="0.5.2"; sha256="1a1z9xxwcyhyy03xq60xirl9f307l45xwi09h49c2r51l662n12f"; depends=[DBI dplyr RSQLite wrapr]; }; + replyr = derive2 { name="replyr"; version="0.5.3"; sha256="1v05a3lyb63fcygwg4392lnrmr0zsk26x18a78jrnqnrx8c00wg2"; depends=[DBI dplyr RSQLite wrapr]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; - repo = derive2 { name="repo"; version="2.0.2"; sha256="1rgcgl1a0sz3mnj0ny7507bkrlxbbh7ab39jwfm99ssipia12jjh"; depends=[digest]; }; + repo = derive2 { name="repo"; version="2.1.1"; sha256="0raxdjar1fzfr4122zd5hq9pifs13kkswpc0lfqxfzk9izwdk5f7"; depends=[digest]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; reportROC = derive2 { name="reportROC"; version="1.0"; sha256="0w570vvpwnz78kx4pfgri4lfx7l8xn6zjclimx2rskx5c2z3q5w7"; depends=[pROC]; }; reportReg = derive2 { name="reportReg"; version="0.1.0"; sha256="1xnrc7c73d5gwz6381z2nikg7jy1sygm6iw6raah8yrdzv5d816d"; depends=[]; }; @@ -9339,6 +9527,7 @@ in with self; { reprex = derive2 { name="reprex"; version="0.1.1"; sha256="0jxsnlspy12dnbpkghkmkr6p6783dhvsk3g9mj7gpn5j74qfk6li"; depends=[callr clipr knitr rmarkdown whisker]; }; reproducer = derive2 { name="reproducer"; version="0.1.9"; sha256="092gz58sanpawgg0jk1634x9ki0jw460csbb6cywp0ndghswfgwh"; depends=[ggplot2 gridExtra lme4 MASS metafor openxlsx xtable]; }; reproducible = derive2 { name="reproducible"; version="0.1.3"; sha256="0a5czpvydy5z98yh6dbhwfya5jix630g0zh3yf1xja069fj6bgav"; depends=[archivist data_table devtools digest fastdigest git2r magrittr raster sp]; }; + repurrrsive = derive2 { name="repurrrsive"; version="0.1.0"; sha256="1ffldcs30xa4wcd825bgpcmqsndfyxx70dfmbb3c86ic9kq17p01"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.0"; sha256="1sy88adw45fxyvi4ma25zplsvqi71rknjc0qi66p7yfs260l9hgj"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; @@ -9355,10 +9544,10 @@ in with self; { restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restlos = derive2 { name="restlos"; version="0.2-2"; sha256="083w1ldax8bnf3w4119damma2nz75c3ki187b0275i1mqxqrixp7"; depends=[geometry igraph limSolve rgl som]; }; restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; }; - restriktor = derive2 { name="restriktor"; version="0.1-55"; sha256="1yrzx7w14s04ppc16iw2hialx1k6k45ag9702vm8cnf31hm14kxp"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; + restriktor = derive2 { name="restriktor"; version="0.1-70"; sha256="07j6ypd5jms7kfk0fnlncvwdbmjbfpq3j1fb5j6s2kqn8d21wqy7"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.3"; sha256="0ilya3v75989zqm16x69w4599ax2s5j2n6f16bmhwydrmzxs1g48"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.0.0"; sha256="0a28r0rkg4m6jsrvczkkpdqrca3q5l5pgb4wyz6pvy5scjlvmpls"; depends=[rjson]; }; - reticulate = derive2 { name="reticulate"; version="1.0"; sha256="0ych5f6kp9gq9lgwhi4ga3n4abqgqbbxfbw3ib6wsq0dgvz9d2p9"; depends=[jsonlite Rcpp]; }; + reticulate = derive2 { name="reticulate"; version="1.1"; sha256="0ahfhir3mg33zry5i1l584ics37viw6pga9i5v0y6v1kr5krjmrn"; depends=[jsonlite Rcpp]; }; retimes = derive2 { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; retistruct = derive2 { name="retistruct"; version="0.5.12"; sha256="11m4i29i3zqh9chyjgdhzqj4yqlslfm8y4q0x14xxc2r9lqbkj9l"; depends=[foreign geometry png R_matlab rgl RImageJROI RTriangle sp ttutils]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; @@ -9372,7 +9561,7 @@ in with self; { rex = derive2 { name="rex"; version="1.1.1"; sha256="0cs13hqv2wb549rhq84psky401pz8r41ia7c0pnyvhxfa2l6zrr8"; depends=[lazyeval magrittr]; }; rexpokit = derive2 { name="rexpokit"; version="0.26.1"; sha256="12zg56gv9miqlhyi4c61nk2fpgz40xi1kd2wzgs4sjwxn5g8cgvk"; depends=[Rcpp]; }; rfPermute = derive2 { name="rfPermute"; version="2.1.5"; sha256="0c7yi395j640mvnr1qlm9hy1w6vva33fa2lqb3amzkafy4j1cs63"; depends=[abind ggplot2 gridExtra randomForest reshape2 swfscMisc]; }; - rfUtilities = derive2 { name="rfUtilities"; version="2.1-0"; sha256="0zjk7rb9k0fpamdll57zxrihvxykn1821v7xkwgfhkwl9rxi8s0f"; depends=[randomForest]; }; + rfUtilities = derive2 { name="rfUtilities"; version="2.1-1"; sha256="0dycsq5w4a2j5xzk5i8mbv742ryv1q0lyi3i7yfjl9vfbm1p1wjw"; depends=[randomForest]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; rfishbase = derive2 { name="rfishbase"; version="2.1.2"; sha256="1w8jk6qfhyzzmxf8qnqqwckm4syrqimi8k6dqmwflgxz6bsxcz0v"; depends=[dplyr httr lazyeval tidyr]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; @@ -9385,20 +9574,20 @@ in with self; { rgam = derive2 { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp RcppArmadillo]; }; rgbif = derive2 { name="rgbif"; version="0.9.8"; sha256="17pixyx2wicxdwqz7mziharanqdv865hmb9lz2kfqy1gzpv29jp2"; depends=[crul data_table geoaxe ggplot2 jsonlite magrittr oai tibble whisker wicket xml2]; }; rgcvpack = derive2 { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; - rgdal = derive2 { name="rgdal"; version="1.2-8"; sha256="09dawi9a4b97vi0flga7b2iy3xgpm03qxjy9j0c0j47b1vkwfz5q"; depends=[sp]; }; + rgdal = derive2 { name="rgdal"; version="1.2-11"; sha256="06hna03nk74hsqyzn9px8gy9m2yk8azc0y5if4j1mdxv0agkydwv"; depends=[sp]; }; rgenoud = derive2 { name="rgenoud"; version="5.7-12.4"; sha256="19y0297fsxggjrdjv8n3a5klbqf8y3mq4mmdz6xx28cz3k65dk4n"; depends=[]; }; rgeoapi = derive2 { name="rgeoapi"; version="1.1.0"; sha256="0k8p1l0vrgx0bifbc2i9gxxwih513vbqhjh7fiifyfq3r74i4j7k"; depends=[httr magrittr rjson]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.0.1"; sha256="1v9kd71wpxna1war0rbp91pc5wdqlganmj2c2fc5m5176dnxd2v3"; depends=[httr Rcpp]; }; - rgeos = derive2 { name="rgeos"; version="0.3-23"; sha256="0p04szj4bcsycj6lgnq65dgsc3w807hdqp5zrd5zxgclhqryq9nm"; depends=[sp]; }; + rgeos = derive2 { name="rgeos"; version="0.3-25"; sha256="0fjk2xmly0p27r6rmcns1m2xza8fwl6is4126xpaj1c9nhg684yi"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; }; rggobi = derive2 { name="rggobi"; version="2.1.21"; sha256="0zi4rhggngm0y8dsjxqlr2mmfc5wzi7l1qcp5gin4bjlbyf8yb3z"; depends=[RGtk2]; }; rgho = derive2 { name="rgho"; version="1.0.1"; sha256="0jkfmyn3i50vsqciy96wd2fpik6yfg0sz6rrhwb04jv1dmyz2nfa"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr tibble tidyr]; }; rgl = derive2 { name="rgl"; version="0.98.1"; sha256="11k93b3wkfasx63w0niin1ns1kgzrmjm66la7kvp5rljw3cvwjaz"; depends=[htmltools htmlwidgets jsonlite knitr magrittr shiny]; }; - rglobi = derive2 { name="rglobi"; version="0.2.9"; sha256="15kc3gb998ryrnpw6nn87vsg63xknchs0hbl33g9napyj5wjmmiw"; depends=[RCurl rjson]; }; + rglobi = derive2 { name="rglobi"; version="0.2.10"; sha256="1y4li552ly5ww7rd6da7kbm5v5r6hwm7n2475dwlqyshnsc3x3gh"; depends=[RCurl rjson]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgp = derive2 { name="rgp"; version="0.4-1"; sha256="1p5qa46v0sli7ccyp39iysn04yvq80dy2w1hk4c80pfwrxc6n03g"; depends=[emoa]; }; rgpui = derive2 { name="rgpui"; version="0.1-2"; sha256="0sh5wj4f2wj6g3r7xaq95q89n0qjavchi5kfi6sj1j34ykybbs3g"; depends=[emoa rgp shiny]; }; - rgr = derive2 { name="rgr"; version="1.1.13"; sha256="1l6cf3hmi6mzsqg6dpnw90a6ljhvwar4rjjkamx4mc9hlfsrkggq"; depends=[fastICA MASS]; }; + rgr = derive2 { name="rgr"; version="1.1.14"; sha256="1g5ssxfamghl7d8smlb9zwk31zf5m090y9f88nripad4k9l58fkl"; depends=[fastICA MASS]; }; rgrass7 = derive2 { name="rgrass7"; version="0.1-9"; sha256="079rkzxpp6l9gppnag83sq87y5l6pby3k0dg32065sr758yr3vx0"; depends=[sp XML]; }; rgw = derive2 { name="rgw"; version="0.1.0"; sha256="12f7bsfg24cld9y47jyqxswgc1bk4adbhhdpycapinbcfhyzc91p"; depends=[]; }; rhandsontable = derive2 { name="rhandsontable"; version="0.3.4"; sha256="1ng97l2x9hyqv3cckis81p5bxm4wndv6sipyxy26x9pnyw9lq3kp"; depends=[htmlwidgets jsonlite magrittr]; }; @@ -9444,7 +9633,7 @@ in with self; { rkt = derive2 { name="rkt"; version="1.5"; sha256="1rgf7dnk4d1b46rns2mb2s1ilxq7hqrh057vrrl00324r4h8bs1k"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; rlang = derive2 { name="rlang"; version="0.1.2"; sha256="1yc5qyq6h0nrya7m2fqnfv19zh5xwsl28jx6zi2g1zz6ra4cvkwh"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.1.4"; sha256="0cf5ixz7hpjwfny23yf622z7d1l282las5q8jh675v5ai67ayyb0"; depends=[data_table Rcpp]; }; + rlas = derive2 { name="rlas"; version="1.1.5"; sha256="04s71d724yjwdlh5906l6c4dra3q6pqvvqimlx51jjb75yf761pv"; depends=[data_table Rcpp]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-4"; sha256="0d5mcdzn6f5nhwzs165a24z36d0b8gd0cyfyzffvr6p96h8qydy7"; depends=[]; }; @@ -9464,7 +9653,7 @@ in with self; { rmdformats = derive2 { name="rmdformats"; version="0.3.3"; sha256="06nyrdhy26mvgfb1bnlbd8hslybpc01a30a40wwlc3ay7yp0nzrj"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; rmdshower = derive2 { name="rmdshower"; version="2.0.0"; sha256="0prxq0zakcm5lh1ki15d1d267yxr43295zcxigpy011lawccaglm"; depends=[rmarkdown]; }; rmeta = derive2 { name="rmeta"; version="2.16"; sha256="1s3n185kk0ddv8v6c7mbc7cpj6yg532r7is6pjf9vda7317rxywy"; depends=[]; }; - rmetasim = derive2 { name="rmetasim"; version="3.0.5"; sha256="0a5pn146ds4biswh59kaddzryd80l54rhcaqsryhmv6pp4ywg5a1"; depends=[ade4 adegenet gtools pegas]; }; + rmetasim = derive2 { name="rmetasim"; version="3.1.3"; sha256="1i1rrfgjh1axvd6kdjlm19i3qj0zif7k4dvlfh64ayg8i3nwb38p"; depends=[ade4 adegenet gtools pegas]; }; rmgarch = derive2 { name="rmgarch"; version="1.3-0"; sha256="0brqjhplvzl0bgsi6x057rb2cg5x372i746dhddr013p1mx0rlcx"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; rminer = derive2 { name="rminer"; version="1.4.2"; sha256="1hjgcawjrwsf0nv2hlznr1cvpm445yyxc6cq28k2yzyivk74si34"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; rmngb = derive2 { name="rmngb"; version="0.6-1"; sha256="1wyq8jvzqpy1s6w0j77ngh5x2q7mpj0ib01m8mla20w6yr6xbqjk"; depends=[Hmisc]; }; @@ -9474,7 +9663,7 @@ in with self; { rms = derive2 { name="rms"; version="5.1-1"; sha256="1qxzs640yq61629d0fb9ydbx222fbd7q922jrw5v8d64yn6r92f4"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; - rmumps = derive2 { name="rmumps"; version="5.1.1-2"; sha256="17yngpzzka93ryma8sdbdpnzji8501l90vvajqxfn9dyrwyq0hpy"; depends=[Rcpp]; }; + rmumps = derive2 { name="rmumps"; version="5.1.1-3"; sha256="1bkz6kdyjrz88f0awp9zx0kv3jx2fqpnf8ip2vhrpwcgrbv6d0d8"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.0"; sha256="0f30afqbzrsgbnfpniwhbw4b8hlzc5zyaixvn9giggzwczfnf29k"; depends=[]; }; rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; }; @@ -9495,10 +9684,10 @@ in with self; { robCompositions = derive2 { name="robCompositions"; version="2.0.6"; sha256="1r74w6ssq9fhjain02hr9sz0x2j1fi1waw7319gls69kp73b51hw"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp robustbase rrcov sROC VIM]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; robeth = derive2 { name="robeth"; version="2.7"; sha256="03pnwd3xjb9yv8jfav0s4l9k5pgpampp15ak7z0yvkjs20rvfq3d"; depends=[]; }; - robets = derive2 { name="robets"; version="1.2"; sha256="0nsp3wwwpnyv94ga3rqndddh374hz70gi1fsvp8gc050sxhmmml0"; depends=[forecast Rcpp]; }; + robets = derive2 { name="robets"; version="1.3"; sha256="123f08h763ifd2ydh1hp3jp6gqnc12cia9ndlp8jxkck8l3pnwkh"; depends=[forecast Rcpp]; }; robfilter = derive2 { name="robfilter"; version="4.1"; sha256="161rsqyy2gq1n6ysz0l4d4gqvxhs72hznc2d5hljxdaz3sbdzzig"; depends=[lattice MASS robustbase]; }; robmed = derive2 { name="robmed"; version="0.1.1"; sha256="1716vzci0lmim4n28bc2pjky1shjxqrclgllj3hc4dzf8j22dxbz"; depends=[boot ggplot2]; }; - robotstxt = derive2 { name="robotstxt"; version="0.4.0"; sha256="11swx64aavim9q47b9qv4h9kpshq80wcb2ib74dmkjckmd8yxyjy"; depends=[httr stringr]; }; + robotstxt = derive2 { name="robotstxt"; version="0.4.1"; sha256="1azsdddy5vcr0qw6fh2n9hz4j4lq6p04p6ckvckkbf6a52bmnifa"; depends=[httr magrittr stringr]; }; robreg3S = derive2 { name="robreg3S"; version="0.3"; sha256="0rv8qh98wws1f40d1kmysyy9qin0ngsvwq63cnxbwi290wsnrvls"; depends=[GSE MASS robustbase]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; robust = derive2 { name="robust"; version="0.4-18"; sha256="1b7qh1aff500nd6dh4y2ipmjgdiq8991shflb63pc39vpc0ny6g4"; depends=[fit_models lattice MASS robustbase rrcov]; }; @@ -9563,7 +9752,7 @@ in with self; { rpdo = derive2 { name="rpdo"; version="0.2.2"; sha256="1yzvi4givrwpbs56p2vf0gciaigq50qq0r0n5lyaqk73azzhnhxc"; depends=[curl datacheckr dplyr lubridate magrittr readr stringr tidyr]; }; rpf = derive2 { name="rpf"; version="0.53"; sha256="16d28i8s7f6ag1jvxw1ns8pi3s1rbxp9z9l13bxsm6cd6kq5jgrq"; depends=[mvtnorm RcppEigen]; }; rpg = derive2 { name="rpg"; version="1.5"; sha256="0hjfzikaryr55xjfw7zjdby4ja59rxq9ikycgbpapvpy2q9py5yp"; depends=[getPass RApiSerialize Rcpp uuid]; }; - rpgm = derive2 { name="rpgm"; version="1.0.1"; sha256="15qg4hd2bs7wc2snm3m0vl1mv34ppf4w61da42ix7jc1ya9n3990"; depends=[]; }; + rpgm = derive2 { name="rpgm"; version="1.0.2"; sha256="1pr4s6q9cbw3895c2wal9ydd0fqrcancc35y5nchy0bbmgqagzpg"; depends=[]; }; rphast = derive2 { name="rphast"; version="1.6.5"; sha256="1jff94hx7skvd6icbrcyabsvz80sgqqv28vz91mcz5jh6v6afhl3"; depends=[]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.2.0"; sha256="0h7za8bmyg7b150l7a2jz6czxdh4gi0q0gv6ddpdlgk86slw9nmh"; depends=[htmlwidgets]; }; @@ -9576,11 +9765,11 @@ in with self; { rpostgis = derive2 { name="rpostgis"; version="1.3.0"; sha256="09q54si187wv2bh2akrdan3d1klx9jczi6bllpl5iwjp1wasxiys"; depends=[DBI raster rgeos RPostgreSQL sp]; }; rpostgisLT = derive2 { name="rpostgisLT"; version="0.5.0"; sha256="0dvzprhwdqm763b0n82vzj4blns9chlcpp7wkrsm1w67zakn02mk"; depends=[adehabitatLT DBI rpostgis RPostgreSQL sp testthat]; }; rpql = derive2 { name="rpql"; version="0.5"; sha256="1d5mr04jk08l617zkqn13njglwj0w9an1rix937bcxw69blshahi"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm]; }; - rprev = derive2 { name="rprev"; version="0.2.3"; sha256="14p79f0mkvgwk8bwjnr7gvkvs8c632z7hddcyyrwldpilwyjnsgc"; depends=[doParallel dplyr foreach ggplot2 lazyeval magrittr rms survival tidyr]; }; + rprev = derive2 { name="rprev"; version="0.2.4"; sha256="1krrplgi2qfcm5kdz2am8fq8kjx67gjwxyd4ylf406r18xbvjd1d"; depends=[doParallel dplyr foreach ggplot2 lazyeval magrittr rms survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; rprojroot = derive2 { name="rprojroot"; version="1.2"; sha256="1fgyxv1zv04sllcclzz089xl6hpdzac7xk61l0l4acb7rqsx5d18"; depends=[backports]; }; - rpsftm = derive2 { name="rpsftm"; version="1.1.0"; sha256="028y67pri687xwxf2k32qhyfz45gv49aj3qm3y67c5znsdagj2c0"; depends=[ggplot2 survival]; }; + rpsftm = derive2 { name="rpsftm"; version="1.2.0"; sha256="1k6qnc025l4f1klwllf9whd14v389wj2b5a7q5jj2b7d99pfkqri"; depends=[ggplot2 rootSolve survival]; }; rpst = derive2 { name="rpst"; version="1.0.0"; sha256="10cbgj67lqgh5bawwa0nwj9kfl3jg4vdm121kc61q199v8dw7nrz"; depends=[plotrix survival]; }; rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; rptR = derive2 { name="rptR"; version="0.9.2"; sha256="0qa9ml4kmmm0r06akf9azra0z3903w1qfi2zkvzhxahp508l20gs"; depends=[lme4 pbapply]; }; @@ -9595,7 +9784,7 @@ in with self; { rrcovNA = derive2 { name="rrcovNA"; version="0.4-9"; sha256="1qc9xqm5x55dqjx1y7s4a2nwc07v32rygicbb8469knxasf92cs3"; depends=[cluster lattice norm robustbase rrcov]; }; rrecsys = derive2 { name="rrecsys"; version="0.9.7.1"; sha256="03qdpy6n1f4bqnpladzp0qc3ky7ccdjr176m6pla7x205pll03w7"; depends=[ggplot2 knitr MASS Rcpp registry]; }; rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; }; - rredlist = derive2 { name="rredlist"; version="0.3.0"; sha256="1w59rqwgx3hr9icw8pzwc95117vrqkj3mq197kp0qy8xbkf83h8v"; depends=[crul jsonlite]; }; + rredlist = derive2 { name="rredlist"; version="0.4.0"; sha256="0j2hab26zs9dyg9fggza7yffbvwvnmrk5frbfs2ys8h3hg2x6ncy"; depends=[crul jsonlite]; }; rrefine = derive2 { name="rrefine"; version="1.0"; sha256="1lh3vddrp5k9bhz5spv93w0qm9z5lskpdgxfksys0l3275hzx1lm"; depends=[httr readr rlist]; }; rrepast = derive2 { name="rrepast"; version="0.6.0"; sha256="1d6nk6437c4bxbyvpzdlgd1kxh651979m0k7aadi9fl77i5k2x3w"; depends=[digest ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; rriskDistributions = derive2 { name="rriskDistributions"; version="2.1.2"; sha256="1d9dwgw8la8wwq9cdnl7qibkzbdl4cj0qvf05x7w13ip973dwpaq"; depends=[eha mc2d msm tkrplot]; }; @@ -9606,7 +9795,7 @@ in with self; { rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsample = derive2 { name="rsample"; version="0.0.1"; sha256="1l2b6wy9pgq84c40wpj5rnbx25cdp226fw6lmx93wri29a613652"; depends=[broom dplyr purrr rlang tibble tidyr]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; - rscala = derive2 { name="rscala"; version="2.3.1"; sha256="01hhw6gsl95r0cm1zfgm7s64diqik14wzvc99sw1xkykmq8shjc9"; depends=[]; }; + rscala = derive2 { name="rscala"; version="2.3.5"; sha256="0y92n0fciz0sn23i992p64smq8q9llj8yvwz5crqjjp9yv23hxcd"; depends=[]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; rsconnect = derive2 { name="rsconnect"; version="0.8.5"; sha256="0y2sajcw1yngig06l7bxzcw993jbx13fl47fag9fa4f70qpnnwmq"; depends=[digest packrat PKI RCurl RJSONIO rstudioapi yaml]; }; rscopus = derive2 { name="rscopus"; version="0.4.6"; sha256="0s8ahdp884yy2hpa5kq9d4kcnr0hx662wp7h0qi399pc0y1rydwm"; depends=[httr plyr]; }; @@ -9626,20 +9815,22 @@ in with self; { rsoi = derive2 { name="rsoi"; version="0.3.0"; sha256="0syl90akbbg50pyhsa4nyq2r4psi2n6qg48a4nxprgz412n8rjbv"; depends=[dplyr lubridate readr]; }; rsolr = derive2 { name="rsolr"; version="0.0.8"; sha256="1swhg7hnkdphnw0d9jrzn18nk2v5a6ny7n652fh8d0k88a27xx4d"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; rspa = derive2 { name="rspa"; version="0.2.1"; sha256="0m3h25jxfccdqy4gf3cls4wcdpw580yfmb3lvw4ndfva8lj2q6sy"; depends=[lintools validate]; }; - rsparkling = derive2 { name="rsparkling"; version="0.2.1"; sha256="1kc34li3an6nzyf81w02p0dk8jys50mvl8cdz25vjr01d2dh5vf6"; depends=[h2o sparklyr]; }; + rsparkling = derive2 { name="rsparkling"; version="0.2.2"; sha256="0ji7890ba6ry553kgffsgsqmk5lawg3jyd4y6y59a2a4ysvvwq8z"; depends=[h2o sparklyr]; }; rsq = derive2 { name="rsq"; version="1.0"; sha256="151f7pngx54wpawb5hchacj0rbymdzyki16fkj9291cfz1cqbcx9"; depends=[MASS]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; rstan = derive2 { name="rstan"; version="2.16.2"; sha256="0irqh4ggk23s3c0ipihwv8m0qmkxh5j7vdxgnsarhqca6254r2vb"; depends=[BH ggplot2 gridExtra inline Rcpp RcppEigen StanHeaders]; }; rstanarm = derive2 { name="rstanarm"; version="2.15.3"; sha256="00x4ayqp31sypzhbdg6pv627w1p134qlgn7jvgxszihc7dcfb7fg"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders]; }; + rstansim = derive2 { name="rstansim"; version="0.1.1"; sha256="09hg4ishzp6q90nrl94h21al0ad0jn7fr8brp8f0xa9cvkwlzjpg"; depends=[doRNG doSNOW foreach loo Rcpp rstan]; }; rstantools = derive2 { name="rstantools"; version="1.3.0"; sha256="080mn4yh7fhd5qww1zr6l14gfsk5d6fakm8x2lmsqkn42j2i6cw9"; depends=[]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.1"; sha256="0aj4x3lyrldpgh90v90qbxylndacn5ri5yqff3qy53q45ar7yji3"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="0.10"; sha256="0b2sdgpb3hzal34gd9ldd7aihlhl3wndg4i4b3wy6rrrjkficrl1"; depends=[]; }; - rstpm2 = derive2 { name="rstpm2"; version="1.3.4"; sha256="0vm5w597lz3zzklm21avxm88lqgrn9k2hlfh4yvmqk4vmwp4qkcc"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; + rstpm2 = derive2 { name="rstpm2"; version="1.4.1"; sha256="0pgy9a8llj0zzzc06afzd0w11mdbx3xvmjf0qpzvsid1zqdbcqxr"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.5"; sha256="1wprsnwl63cc4a6j5h18r09wlh32bq5z6hj6r5klp7rkpjchsplp"; depends=[]; }; - rstudioapi = derive2 { name="rstudioapi"; version="0.6"; sha256="1zkvz72z6nw0xc8bhb21y5x1nk6avijs0w8n4vsbvw9sn76wc96s"; depends=[]; }; + rstudioapi = derive2 { name="rstudioapi"; version="0.7"; sha256="133s75q2hr6jg28m1wvs96qrbc9c4vw87migwhkjqb88xxvbqhd5"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; }; rsunlight = derive2 { name="rsunlight"; version="0.4.2"; sha256="1m4ya960zjqxbjcjj42gjmdy40ac7m471fkfsd0r6w675qbiiw87"; depends=[httr jsonlite plyr stringr]; }; + rsurface = derive2 { name="rsurface"; version="1.0.2"; sha256="0lmwk8gk9h9np5fp652zvlapfdwgifarmib23dnifn5d904ia2sl"; depends=[plotly rsm]; }; rsurfer = derive2 { name="rsurfer"; version="0.1"; sha256="1qxnvhlwdiianzkj3hidg1qkqzai0ds8k1y67cvjlfcdyy4f01w9"; depends=[gdata stringr]; }; rsvd = derive2 { name="rsvd"; version="0.6"; sha256="0vrsgxbbk5n51i1s80bixcxph2ws86zpbdqs81yfvnzghrc99nas"; depends=[]; }; rsvg = derive2 { name="rsvg"; version="1.1"; sha256="17jfspbvlfp2cdw9s4m128rqw5kvb7i5h335569n3518spqmgi4f"; depends=[]; }; @@ -9674,7 +9865,7 @@ in with self; { runittotestthat = derive2 { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; }; runjags = derive2 { name="runjags"; version="2.0.4-2"; sha256="035sxmh0b0m6dwz8qbpsmw2p7ihkx3cxgkhj27i0j6dsjryl3x4p"; depends=[coda lattice]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; - rust = derive2 { name="rust"; version="1.2.2"; sha256="0q2wc9jvlf063lkf3m1qz587wsgjiba8bfl6hw0v3myshjqx08xm"; depends=[Rcpp RcppArmadillo spatstat]; }; + rust = derive2 { name="rust"; version="1.2.3"; sha256="13aa8hq2zzzm1ydcva1067shxasqwhyfc4mxyvp4gsspgbpf8q2n"; depends=[Rcpp RcppArmadillo spatstat]; }; ruv = derive2 { name="ruv"; version="0.9.6"; sha256="12zi775nx6k1j9sz691x6r9r0arfnhwddf5nxbr1xk25dj9qa210"; depends=[]; }; rv = derive2 { name="rv"; version="2.3.2"; sha256="108s9q19h5ypxb9w4a8nk97js261izag1sf75g4xfqblwxxrbflc"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; @@ -9684,10 +9875,12 @@ in with self; { rversions = derive2 { name="rversions"; version="1.0.3"; sha256="0i2gi05nrvknr7g89rbppkswyfcwwd4r9gp75fdfhpah8sgq1l11"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.6.0"; sha256="1xxk4951vdg7qd1bn0hnnrsgnamdayc0vdw6kswpkbnzi9bfsmdk"; depends=[crul dplyr ggplot2 jsonlite maps]; }; rvest = derive2 { name="rvest"; version="0.3.2"; sha256="04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"; depends=[httr magrittr selectr xml2]; }; - rvg = derive2 { name="rvg"; version="0.1.4"; sha256="0jrnikx1d523amx32r34h4p64ipxs7i722rmlsg1nq39cb4dc36v"; depends=[gdtools officer Rcpp xml2]; }; + rvg = derive2 { name="rvg"; version="0.1.5"; sha256="1ssvglkq8f0zmrsn55nwfw8zrsk9nlsb3mbvhmnzg4xl967zdfwz"; depends=[gdtools officer Rcpp xml2]; }; rvgtest = derive2 { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; - rwalkr = derive2 { name="rwalkr"; version="0.2.0"; sha256="0z5g45m3ica6r5ah1jnsrvgnxsbwh5n7c5f3dhkgf4m2j6cdpl8g"; depends=[dplyr tidyr]; }; + rvinecopulib = derive2 { name="rvinecopulib"; version="0.1.0.1.1"; sha256="015cmq7hdizzb49jr0y6zgrr4ncwn17s166r3bbfnln814bq6g86"; depends=[BH lattice Rcpp RcppEigen RcppProgress]; }; + rwalkr = derive2 { name="rwalkr"; version="0.3.1"; sha256="04pkzifj1gx7915s8d3gq9w90vcpy8lchag6r72qg4p78lq1qjbk"; depends=[dplyr httr tidyr]; }; rwars = derive2 { name="rwars"; version="1.0.0"; sha256="0kmwpr6gn3xsf0pqx153vblpjbhc34mzlgyv8xb2nw78nf8znfij"; depends=[httr]; }; + rwc = derive2 { name="rwc"; version="1.1"; sha256="0gdpskj87wjnpas90i3iqn1qv6frrki2xqiyyakg3zpaviw1imag"; depends=[MASS Matrix mvtnorm raster]; }; rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; }; rworldmap = derive2 { name="rworldmap"; version="1.3-6"; sha256="1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"; depends=[fields maptools sp]; }; rworldxtra = derive2 { name="rworldxtra"; version="1.01"; sha256="183z01h316wf1r4vjvjhbj7cg4xarn4b8qbmnn5y7nrrdndzi163"; depends=[sp]; }; @@ -9723,7 +9916,7 @@ in with self; { sae2 = derive2 { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; }; saeRobust = derive2 { name="saeRobust"; version="0.1.0"; sha256="1zin9ix4wx3qbx2mfjyn61l0g1k4dgn4ps79qn21y6l9r647ya9q"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.9.0"; sha256="19l41qpwspccphmgxi20p7f473lxxh8d86b0wyy5jq24phhd8awx"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; - saemix = derive2 { name="saemix"; version="1.2"; sha256="1whwn54iiapdfig6qpzji3z3skir6jrs34dq78zlynibgrg95hx6"; depends=[]; }; + saemix = derive2 { name="saemix"; version="2.1"; sha256="1g52vkqg2dfld7miakkmp23yf4yzc7ka0hbg2fl6ya9cq9m7wyqq"; depends=[]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; safer = derive2 { name="safer"; version="0.1.0"; sha256="04hwncx9g9c6lb4l9f12nyld5wq4fqr8v4w0m64qhwyiv0zi8sh1"; depends=[assertthat base64enc sodium]; }; @@ -9764,12 +9957,13 @@ in with self; { sca = derive2 { name="sca"; version="0.9-0"; sha256="1xqdcxxsrsl8v2i8ifqcgb38vayz8ymay2sw4m9hmpma54a6r9j5"; depends=[]; }; scaRabee = derive2 { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; }; scagnostics = derive2 { name="scagnostics"; version="0.2-4"; sha256="0fhc7d2nfhm8w6s6z1ls6i8d7c90h4q7rb92rz8pgq3xh031hpcf"; depends=[rJava]; }; - scales = derive2 { name="scales"; version="0.4.1"; sha256="1lqccfmqdwrw0cjyqvw2zvgpk2jvnqrfb303l1raqyyf3zxqhav4"; depends=[dichromat labeling munsell plyr RColorBrewer Rcpp]; }; + scaleboot = derive2 { name="scaleboot"; version="0.3-4"; sha256="16shdj4b8pbdbphqzw7r5xzx6k2qfkr729inv21gkp9qcp4h0vrm"; depends=[mvtnorm pvclust]; }; + scales = derive2 { name="scales"; version="0.5.0"; sha256="0zg9wfzmsdjxpbld0nzv7hcpq5r0wazqxmn7grvvif2agj0w1z6v"; depends=[dichromat labeling munsell plyr R6 RColorBrewer Rcpp viridisLite]; }; scalpel = derive2 { name="scalpel"; version="1.0.0"; sha256="0zk81q2f49vrbprlvjq3q4s2ak7rrlpj55rrfkqr8nq1vvi6nxd2"; depends=[gam igraph Matrix protoclust R_matlab SDMTools]; }; scalreg = derive2 { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; }; - scam = derive2 { name="scam"; version="1.2-1"; sha256="039iym85khym5m6g712lbd5s0c6dfw9xlpvlj29rwlcl1dkr1g7v"; depends=[Matrix mgcv]; }; + scam = derive2 { name="scam"; version="1.2-2"; sha256="04w0y2l4h3xddb6mzyhf0mcx6kbphrmjyfc59cqw9z88sssfrmm7"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.20"; sha256="1xyng9dlfmp7n2h91n4xy9lx3jm205gjiizdqk1yj1qw8mmahvqc"; depends=[nlme]; }; - scanstatistics = derive2 { name="scanstatistics"; version="0.1.0"; sha256="0snscxaw2j406bi29ns0z34lb3q39fq3wikkdnps6gkvxg97614i"; depends=[data_table gamlss_dist magrittr plyr sets]; }; + scanstatistics = derive2 { name="scanstatistics"; version="1.0.0"; sha256="0mgrjkn4yhpyjv313d4arnaipv107nlcbkqzvkv6b2c97z57mpds"; depends=[dplyr emdbook gamlss_dist ismev magrittr plyr purrr Rcpp RcppArmadillo reliaR sets tibble tidyr]; }; scape = derive2 { name="scape"; version="2.3-1"; sha256="0maccnkhn7wf6brwnb5b7nh2yx3afx0h7kji2475mvg19909mddq"; depends=[coda Hmisc lattice]; }; scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatterD3 = derive2 { name="scatterD3"; version="0.8.1"; sha256="1fyk2z8ari73nbah2r4c677nm3v0whfia6sh39gr674cczp6vc8q"; depends=[digest ellipse htmlwidgets]; }; @@ -9791,6 +9985,7 @@ in with self; { sclero = derive2 { name="sclero"; version="0.2"; sha256="1vqysby822s958msnwcqmz78193vrgmpf6si1jnfb9cj90hh7wgg"; depends=[plyr RImageJROI spatstat]; }; scmamp = derive2 { name="scmamp"; version="0.2.55"; sha256="17qhj9l1akxachaimy9d5rls8adph8aalj3qr6ckip29a8ma9gf7"; depends=[ggplot2 graph reshape2 Rgraphviz]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; + scorecard = derive2 { name="scorecard"; version="0.1.0"; sha256="08fmlbg2r149dynbdn1dynknmxy6a98bcsry1fsffmris6g84a0m"; depends=[data_table ggplot2 gridExtra]; }; scorer = derive2 { name="scorer"; version="0.2.0"; sha256="1mc4hxcrqzh4dmz5fy40740bnrp4fxia81fj3cdw9382p67ivhim"; depends=[Rcpp]; }; scoring = derive2 { name="scoring"; version="0.5-1"; sha256="0vxjcbp43h2ipc428qc0gx7nh6my7202hixwhnmspl4f3kai3wkp"; depends=[]; }; scoringRules = derive2 { name="scoringRules"; version="0.9.3"; sha256="1n26k9vg95gq292xgva65wnzk2whfrpyw8ngq7h8jd5zn9by7fpl"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -9804,7 +9999,6 @@ in with self; { scrypt = derive2 { name="scrypt"; version="0.1.1"; sha256="0lgnmag2yr5r67kqni2mpbvflqzaq8icilcxqja7c8fzw6xxzjrx"; depends=[Rcpp]; }; scs = derive2 { name="scs"; version="1.1-1"; sha256="1qx8b73g5v7mjx85lx5bln6j6i9r7m238i7hm8adr2jrbl33532y"; depends=[Matrix]; }; scuba = derive2 { name="scuba"; version="1.9-1"; sha256="1b92b6p9dn54rmcaw2ng41pvvvkmrzgg12d6zcr3yh8qgi89pvdi"; depends=[]; }; - scvxclustr = derive2 { name="scvxclustr"; version="0.1"; sha256="0d72hr9jcw513mapx1plif07b4qsi9b9pad6dwrqlh3z8kb8mn4j"; depends=[cvxclustr gglasso igraph Matrix mclust Rcpp RcppEigen]; }; sdPrior = derive2 { name="sdPrior"; version="0.3"; sha256="0d3w75p3r2h07xhp7fj4si1y4sav8vs0lq6h2h4fn4f2inn3l0vl"; depends=[caTools GB2 MASS]; }; sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; sdat = derive2 { name="sdat"; version="1.0"; sha256="1rp2s3y44f3vj0p16j1k2rrs44kmnzy9k0lpcm9ga801nbv93saz"; depends=[]; }; @@ -9819,6 +10013,7 @@ in with self; { sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdnet = derive2 { name="sdnet"; version="2.3.8"; sha256="10c962wbzgl2zpz7yx5kpryldbbq76qrd5pnz4rlmbaa9kfg08s5"; depends=[]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-5"; sha256="1c6mipq8sh8347i7m7dh47f69fr21xkrsk8yjgsdvcy41h8zijmf"; depends=[numDeriv PolynomF rootSolve]; }; + sdpt3r = derive2 { name="sdpt3r"; version="0.1"; sha256="06mw1h6c8gkhi3vhal17h7px3bb277xz15k2ryqjwc7agzwhmv8c"; depends=[Matrix]; }; sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive2 { name="sdwd"; version="1.0.2"; sha256="0l0w4jn2p9b7acp8gmlv4w8n662l397kbrm4glslik0vnmjv151w"; depends=[Matrix]; }; seacarb = derive2 { name="seacarb"; version="3.2"; sha256="048wbzap9pc7iv7lh9rzdxawbnnjd6lmw7bfadry5xnw26p6vnad"; depends=[gsw oce]; }; @@ -9830,17 +10025,18 @@ in with self; { seasonal = derive2 { name="seasonal"; version="1.6.1"; sha256="1nvavn84f2zb0f6n352br52wcrcmnxv6vprzcpymrnzik7pyp8y6"; depends=[x13binary]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; }; - secr = derive2 { name="secr"; version="3.0.1"; sha256="0pb388kp6w54zm4a6xycl6gd6xa6jvzcqqwchsbdniaq2vz8r64q"; depends=[abind MASS mgcv nlme raster sp]; }; + secr = derive2 { name="secr"; version="3.1.0"; sha256="0g2fmfbxf69jy2r8adw0hpwhb3a3s9ya9vzjw91l84rid50l4900"; depends=[abind MASS mgcv nlme raster sp]; }; secrdesign = derive2 { name="secrdesign"; version="2.4.0"; sha256="0v9d94ra614884imv29qwhr4zkx3dzssdpz8nv86k1kigx51w1xp"; depends=[abind secr]; }; secret = derive2 { name="secret"; version="1.0.0"; sha256="09b28f7ndc167bbanbdydralykq718fixnrgs5xr9d3fbdhz1vdl"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrlinear = derive2 { name="secrlinear"; version="1.1.0"; sha256="0crzpsm8c42v8r0xf9rnrxcinjh22sywgv7cc3pq5s5l2526d5dj"; depends=[igraph maptools MASS rgdal secr sp]; }; secure = derive2 { name="secure"; version="0.5"; sha256="16pv5m7rrcs8hcjj3kylq7smyzf2qk8rkg9m1b421w0ac7lg04x1"; depends=[MASS Rcpp RcppArmadillo]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; + seedCCA = derive2 { name="seedCCA"; version="1.0"; sha256="1grs6ykiyp8p5gh93hgb4niggppbh2wzwl6yx0l1qs9fkcz5zvy7"; depends=[CCA corpcor]; }; seedy = derive2 { name="seedy"; version="1.3"; sha256="1a21sl8i7z12cjaqj08lkq3viazxlgxv82vaarm58fgbpsvdi0m0"; depends=[]; }; seewave = derive2 { name="seewave"; version="2.0.5"; sha256="1ml0jcqb6i6v0xgarvzg51rgax6lsf6y2255jq1kfz4v8n39vnh0"; depends=[tuneR]; }; seg = derive2 { name="seg"; version="0.5-1"; sha256="0gsdbq7b5wpknhlilrw771japr63snvx4vpirvzph4fjyby1c7rg"; depends=[sp splancs]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; - segmented = derive2 { name="segmented"; version="0.5-2.1"; sha256="1i576xksc761nyv2dmq86nwbgqvp0plz6bjcn69nkdwq2wbizmw8"; depends=[]; }; + segmented = derive2 { name="segmented"; version="0.5-2.2"; sha256="1wdjxkgqjqw5q2nywmgkf6y21lb0alhvaqg0m0dr2xyxf1ii79rs"; depends=[]; }; seismic = derive2 { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; seismicRoll = derive2 { name="seismicRoll"; version="1.1.2"; sha256="183lx9lgmi06lv1l4gbmlmblfgjzhph4aavdnxrykpp6122hsq61"; depends=[Rcpp]; }; sejmRP = derive2 { name="sejmRP"; version="1.3.4"; sha256="1j3sadbp12fip3n96s0hx1sg4kzwx8z01p1c905kv8gffhkz9bh0"; depends=[cluster DBI dplyr factoextra RPostgreSQL rvest stringi tidyr XML xml2]; }; @@ -9848,7 +10044,7 @@ in with self; { selectapref = derive2 { name="selectapref"; version="0.1.0"; sha256="09kqrr814261mvpzc9x7v0fcnd4wf8fcl52jsx6snf1qp336hw26"; depends=[]; }; selection = derive2 { name="selection"; version="1.0"; sha256="1w2mzb16frcbh55icc5g8ai3hri9j6dhp7h0kc96iaspphnfw4n8"; depends=[fifer norm]; }; selectiongain = derive2 { name="selectiongain"; version="2.0.591"; sha256="11gd9xdn3jl3mg3c9ykw8bqvcxhihn19iqsy8dl8bacijjv84bva"; depends=[mvtnorm]; }; - selectiveInference = derive2 { name="selectiveInference"; version="1.2.2"; sha256="1rmrvwa54xj3rxmfnhr2vwdxv9s3xlv35pqf08iiy525nqd2hsy5"; depends=[glmnet intervals survival]; }; + selectiveInference = derive2 { name="selectiveInference"; version="1.2.3"; sha256="1fbfnbysy4zzkkwc2w3gkqwficfzn176sksxxadq7l6yv6l1y1d6"; depends=[glmnet intervals survival]; }; selectr = derive2 { name="selectr"; version="0.3-1"; sha256="0jc946456qp3g2icaifrqn4z7z5pn23rfw77796aa8mmlkp7qkyv"; depends=[stringr]; }; selectspm = derive2 { name="selectspm"; version="0.2"; sha256="0wvhlzhl0janhms107xczmilpmr4y26jgk0ag3g34iqba7fbnfqd"; depends=[ecespa spatstat]; }; seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; @@ -9868,13 +10064,13 @@ in with self; { semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sendplot = derive2 { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; }; - sensR = derive2 { name="sensR"; version="1.4-7"; sha256="06dzb1sid7wq9i0x6pnsb5srk9z9pv9y8y5br6bkcbm6k3iv5jsv"; depends=[MASS multcomp numDeriv]; }; - sensiPhy = derive2 { name="sensiPhy"; version="0.6.0"; sha256="00fw8fm3n4jlz5v9fvni4ff3x2fv0ixpjddk2mn6cac7yqfsha6p"; depends=[ape caper ggplot2 phylolm]; }; - sensitivity = derive2 { name="sensitivity"; version="1.14.0"; sha256="042bwjp906jmhsp09n03nf6xkzfvgad13f0bkm3nk5qf9xfjfszm"; depends=[boot]; }; + sensR = derive2 { name="sensR"; version="1.5-0"; sha256="01rs0kiv73rqrlgzwf7hnprb029i5sq1h1qjb9q3879jxj4823pf"; depends=[MASS multcomp numDeriv]; }; + sensiPhy = derive2 { name="sensiPhy"; version="0.7.0"; sha256="18sps4nqr38bc2bsy8zq6yq45asd3s88daal7j2lz2ca6wxn5hgp"; depends=[ape caper ggplot2 phylolm phytools]; }; + sensitivity = derive2 { name="sensitivity"; version="1.15.0"; sha256="02vqs1pqzivxpg2ql3wi0530cshdkz7hxvablpd1dzhvjnindknm"; depends=[boot]; }; sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; }; sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; sensitivityfull = derive2 { name="sensitivityfull"; version="1.5.6"; sha256="0g2gc4rms6gd34d23kxj50pjh0yq1h6yiybj4dxwyf6i2652irhq"; depends=[]; }; - sensitivitymult = derive2 { name="sensitivitymult"; version="1.0.1"; sha256="0x07r9xwkbcxhqa1cg9d7gz5k7a81v9999fbxkf0p380rknzcidc"; depends=[]; }; + sensitivitymult = derive2 { name="sensitivitymult"; version="1.0.2"; sha256="19pyq6c7pvr3zkz3dz5p2hhfcvwm0im0bwaw4yhhgin4kqfnfjd5"; depends=[]; }; sensitivitymv = derive2 { name="sensitivitymv"; version="1.3"; sha256="1bxf85q91smnsl2lsig43vk0c63c805d8ry1xh3w6q675djj14ad"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="1.1"; sha256="1bknnfkkqgmchabcjdfikm37sn5k41ar8lpnjw58i8qh7yzq237i"; depends=[]; }; sensors4plumes = derive2 { name="sensors4plumes"; version="0.9"; sha256="1fyf020bl6p9wdvnsfkmdlllhdwj3l4h9h2paq9dwd7hsr7av48p"; depends=[automap conf_design emdist FNN genalg gstat lattice raster rgdal sp]; }; @@ -9882,7 +10078,7 @@ in with self; { senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; sentimentr = derive2 { name="sentimentr"; version="1.0.0"; sha256="1hniwvm2mr85hs6v9pvs04n73a13nf0qkikxkz9bcb3hfgkk8v6c"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean]; }; separationplot = derive2 { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; }; - seplyr = derive2 { name="seplyr"; version="0.1.4"; sha256="0s347da7f9xxzzym05fr6sfwd0mahg4p8x1qxi0wf13myxkpqv6d"; depends=[dplyr rlang]; }; + seplyr = derive2 { name="seplyr"; version="0.1.5"; sha256="0np2z67swh567dhp6l7apfa6rbysq90hgh9wgwkalw7dc3xbzh2j"; depends=[dplyr rlang wrapr]; }; seqCBS = derive2 { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; }; seqHMM = derive2 { name="seqHMM"; version="1.0.7"; sha256="1pap3i2zxgnxr3frw648hkzbhn4rnz20lzhhvrp89vhc77vh4ds1"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; @@ -9898,7 +10094,7 @@ in with self; { sequenza = derive2 { name="sequenza"; version="2.1.2"; sha256="0f3aj96qvbr1wqimlv6rxg0v34zlrgc6pbdy7sfkwfzs1n44q1xf"; depends=[copynumber squash]; }; sequoia = derive2 { name="sequoia"; version="0.9.3"; sha256="1lxq88bw5fbm2afdh79fs363dvb1c2jsz02dc6c0ndwkwch04igc"; depends=[plyr]; }; sergeant = derive2 { name="sergeant"; version="0.5.2"; sha256="02chkyvmwd4nimw62v82rfbid1xqw5b1335na44pdi675g904250"; depends=[DBI dbplyr dplyr htmltools httr jsonlite purrr readr scales]; }; - serial = derive2 { name="serial"; version="1.2"; sha256="1zjzm5ym8z9g97sff6bg9p5dhjpj6g26wam9j9gklffiry8dd9li"; depends=[]; }; + serial = derive2 { name="serial"; version="1.3"; sha256="1ibwd8xmkd0pwdhivm6h3yd3rsi28mai5n7qcs1bq2mx8hb5lg7f"; depends=[]; }; seriation = derive2 { name="seriation"; version="1.2-2"; sha256="1b6glraxi5zrqzihnh39bbdnzsbd925r9hjpi020d470266g2c8f"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; }; seroincidence = derive2 { name="seroincidence"; version="1.0.5"; sha256="07lphrp7r3i87633q8g6svk2mxbsvq4blrf8gnm0p99hkmz8wgg9"; depends=[]; }; servr = derive2 { name="servr"; version="0.7"; sha256="0rxh89csqlpyf9wv5wlymya9kbddj79mlmxz2x0xmls12gbrxaaa"; depends=[httpuv jsonlite mime]; }; @@ -9910,33 +10106,34 @@ in with self; { setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.4"; sha256="092sv6nccm6p2d695l9w0zfi2xgymk12c8p8lhl9nb86mxrb3nry"; depends=[]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; - sf = derive2 { name="sf"; version="0.5-3"; sha256="1jkdqxkijr1p4ks56iwrxqh93r6627n91i8xpgznk2ghysrdzc57"; depends=[DBI magrittr Rcpp units]; }; + sf = derive2 { name="sf"; version="0.5-4"; sha256="1hma75i0x6mvdrq8i4njwkpmp7dvskxv8mwdjm7xx8bmq13flcgw"; depends=[DBI magrittr Rcpp units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; - sfdct = derive2 { name="sfdct"; version="0.0.3"; sha256="00vm68w8fxwxkw69lay25mpd7zw86a15v5pi3nxnay8jx7vrmbhc"; depends=[dplyr RTriangle sf sp tibble]; }; + sfdct = derive2 { name="sfdct"; version="0.0.4"; sha256="0q392wgdlv2fdksk2rwqjqddxrzgkr3pg1czzqywr3l07pl7gxbj"; depends=[dplyr RTriangle sf sp tibble]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; sfsmisc = derive2 { name="sfsmisc"; version="1.1-1"; sha256="0jzmbywlyzfxs7hlmyd0iynghfc9qp5sa5lnhr73y8r360yv1ahf"; depends=[]; }; sft = derive2 { name="sft"; version="2.0-7"; sha256="1fq1b32f08i4k9bv4hh7rhk1jj7kgans6dwh1bmawaqkchyab3jr"; depends=[fda]; }; - sgPLS = derive2 { name="sgPLS"; version="1.4"; sha256="0yx3vg9rfm6jvrgfaky2dlbrbksa5475gx3g11x6i35nd2nb2p5z"; depends=[mixOmics]; }; + sgPLS = derive2 { name="sgPLS"; version="1.7"; sha256="1jk2j1zn5vq82rcjflnk7g6y2q0v5jl14k804dmigqg013gbykql"; depends=[mixOmics mvtnorm]; }; sgRSEA = derive2 { name="sgRSEA"; version="0.1"; sha256="0vyypnq81l36x0j44q2l9wbf3x4krz4fzypi7vyqhaq97mkzaw5j"; depends=[]; }; sgd = derive2 { name="sgd"; version="1.1"; sha256="1kqpaxyacaq1fkmy4hsj62167gcmqng4pmafpdjdpqxwdqxz9xxf"; depends=[BH bigmemory ggplot2 MASS Rcpp RcppArmadillo]; }; - sgee = derive2 { name="sgee"; version="0.2-0"; sha256="1dpbkab3wzcqp9rgy9gxibjs2dcpb5ql1dlgg97rxjr1fkigwxgk"; depends=[copula mvtnorm]; }; + sgee = derive2 { name="sgee"; version="0.5-0"; sha256="040llsmgwdvq8qr02zh4vnpvyqs8zsbla4qrdrjpcmv9ja52ppb9"; depends=[copula mvtnorm]; }; sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; sglOptim = derive2 { name="sglOptim"; version="1.3.6"; sha256="0gzhzfi5q9hgqgzagfdzi4cswpmwic9ggf72qi6axl1hixgmgp0w"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; sglasso = derive2 { name="sglasso"; version="1.2.2"; sha256="1yk9wvg98a2l9kdaksy75av9z9iz27v5d2zpsqhabqwkwfh6wkad"; depends=[igraph Matrix]; }; + sglg = derive2 { name="sglg"; version="0.1.0"; sha256="13ai3vd7466ffh5960fnl60na8mqkj2d5fqiaq4vj6ws3sxfq7mr"; depends=[Formula robustloggamma ssym survival]; }; sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; - sgmcmc = derive2 { name="sgmcmc"; version="0.1.0"; sha256="1lrr5ixb0dsjsf5g52137mz6bqm2asgnb70qmdqhkad02c8gqrcz"; depends=[tensorflow]; }; + sgmcmc = derive2 { name="sgmcmc"; version="0.2.0"; sha256="1jqk6bic8g5zsdxa9f6w6j6ha6dnghfdi61cyy9vi94xsmkbkv66"; depends=[tensorflow]; }; sgof = derive2 { name="sgof"; version="2.3"; sha256="12bpyvg5df1m2ar6frpi10zlj3dk9h61r13rzn3w5a3nyk8gljsg"; depends=[poibin]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; shades = derive2 { name="shades"; version="0.2.0"; sha256="1r2xbz1h144pg53g3ayy7n08091gv5zj52p02gv7kihir2kzxj0w"; depends=[]; }; shadow = derive2 { name="shadow"; version="0.3.5"; sha256="1y0j90rhd9jpznknyy76g6qnvrdc52wh9s8khabka4gqjgvrmb98"; depends=[raster rgeos sp]; }; - shallot = derive2 { name="shallot"; version="0.4.0"; sha256="0gnas5h770yvi2k09nyq6yywbd36xp6bnnp7psdvcyvhwx439f64"; depends=[commonsMath rscala]; }; + shallot = derive2 { name="shallot"; version="0.4.1"; sha256="1d9ljq8kgr9qcg545w1jzk71zmv103rj5myc47gsk0c84bbaw0n4"; depends=[commonsMath rscala]; }; shape = derive2 { name="shape"; version="1.4.3"; sha256="1v9xp60p813rnx41vchkh32qmcb4z2zp9l7r1a8a6f8aqylnq3vj"; depends=[]; }; shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; - shapes = derive2 { name="shapes"; version="1.2.0"; sha256="0fnwcxnrhy5iqzzmrkbbpr4rirg4ixl96656ywcc1mhwv6d6iw0z"; depends=[MASS rgl scatterplot3d]; }; + shapes = derive2 { name="shapes"; version="1.2.1"; sha256="1f8dy6b2gam0pn4hm10zhw3n5pbmlgkyzgwns5g264x0c49dgbqk"; depends=[MASS rgl scatterplot3d]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.1"; sha256="0rgsad8idhjyjgwlzk358jlqkqf6sk7g6vl3fchkamjzxnhbb8p9"; depends=[ghyp Rcpp]; }; sharpshootR = derive2 { name="sharpshootR"; version="1.0"; sha256="1x9cava7b9lg8qpmjqlbkqmpc9a2dn8k4kl71s4himr4wzp9z4y3"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; @@ -9967,8 +10164,8 @@ in with self; { shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; shopifyr = derive2 { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[R6 RCurl RJSONIO]; }; shotGroups = derive2 { name="shotGroups"; version="0.7.3"; sha256="0h6c4fz2b4gpbfqykic6apflvp11bcafqm87gzl0zv8b03ydylxk"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; - showtext = derive2 { name="showtext"; version="0.4-6"; sha256="17qx9zlmp440p4a9mkba89k1rdx11hdl5px33m1766hlsv1x7sf8"; depends=[showtextdb sysfonts]; }; - showtextdb = derive2 { name="showtextdb"; version="1.0"; sha256="14iv5nyc9wszy1yhbggk7zs042kv10lwk92pn9751hfws53yq6hf"; depends=[sysfonts]; }; + showtext = derive2 { name="showtext"; version="0.5"; sha256="1fn3467n3lgl55dh62y7aq5mg3paf6faxp5kp4s04bn33g87zxgx"; depends=[showtextdb sysfonts]; }; + showtextdb = derive2 { name="showtextdb"; version="2.0"; sha256="1qwwj9x2jvadvwn60h75k99c9xi7yhqjsgaakahz5paxgj583bsh"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-3"; sha256="0mfb3f64kpd23qa1yb19j7j234snls7yvszp2yxnv9yahk0blifw"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; @@ -9988,6 +10185,7 @@ in with self; { signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; sigora = derive2 { name="sigora"; version="2.0.1"; sha256="1sgjafr2f7carwnvp0vsvp80jn2bzwlkay38ch63qk9gapsh4imh"; depends=[]; }; sigr = derive2 { name="sigr"; version="0.1.7"; sha256="06phjjs3c53nlyh0hbwlzk5qms7g0yz3lnbd8sb8pl04v6h0y3d3"; depends=[]; }; + sim1000G = derive2 { name="sim1000G"; version="1.32"; sha256="1x0dzg58wb1kzn1j3ad44v3x4lyy7vwsx1hj1klyk7dgnmhlniym"; depends=[hapsim MASS stringr]; }; simEd = derive2 { name="simEd"; version="1.0.2"; sha256="1r8m5sajc362bx5wzjwd75zn05q7j1kxzzdynbxwb2c8k8q83qyq"; depends=[rstream]; }; simFrame = derive2 { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; simLife = derive2 { name="simLife"; version="0.3"; sha256="0bqhixr4zg7mwgxdsjk0h5a82dyfkhiv9xafw43w2bpnmyxywdia"; depends=[splancs unfoldr]; }; @@ -10004,7 +10202,7 @@ in with self; { simctest = derive2 { name="simctest"; version="2.5"; sha256="038ipxww0n09sh8al5isbm1fikr8kazwxn9cj2d0wgm6cdpy681n"; depends=[]; }; simecol = derive2 { name="simecol"; version="0.8-9"; sha256="1r4nivm6nicqskx2d2jdlszifhlpjkp6iyzppqkavnrhib7g600j"; depends=[deSolve minqa]; }; simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; }; - simex = derive2 { name="simex"; version="1.5"; sha256="01706vbmfgcg13w1kq8v5rnk5xggbd1n7fv50c6bvhdyc1dly313"; depends=[]; }; + simex = derive2 { name="simex"; version="1.7"; sha256="0dmyxhg3bk23y08xbgwlg791pcl3131im3jkh9x5pjqczfjvim0a"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gqp7fg9jv8fs99y19n21bdxsd3f5mlkbvqgl"; depends=[mvtnorm survival]; }; simglm = derive2 { name="simglm"; version="0.6.0"; sha256="1kmi5lpx8m14iz0i9z8811cp6fq2x700qsxn6rxrkxbq88a5mdss"; depends=[dplyr Matrix purrr tibble tidyr]; }; simmer = derive2 { name="simmer"; version="3.6.3"; sha256="0kg7grlsi4mbjnfhhb01aj7jnyfznrhr5g3gd0vxl7xnwj6g8ppv"; depends=[BH codetools magrittr R6 Rcpp]; }; @@ -10024,20 +10222,20 @@ in with self; { simrel = derive2 { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; }; simsalapar = derive2 { name="simsalapar"; version="1.0-9"; sha256="0h46acf797lp1hvs8x91nzll3zxiiczfl6vdxxrwizr109jzggcj"; depends=[colorspace gridBase sfsmisc]; }; simsem = derive2 { name="simsem"; version="0.5-13"; sha256="0v6gbfp4659gbpzc1vffg687c8bcd45ddb7jhd0bgx66m28853kk"; depends=[lavaan]; }; - simstudy = derive2 { name="simstudy"; version="0.1.3"; sha256="1ypggcdxlfkgx60csi8r9m1j6rjqly8q50g0w80h68wrf919f51p"; depends=[data_table mvnfast Rcpp]; }; + simstudy = derive2 { name="simstudy"; version="0.1.4"; sha256="040q269qhgrdgrhp41zc5a0g6fjf7xwd8lmr8q7pi9xbzhlr1d6y"; depends=[data_table mvnfast Rcpp]; }; simsurv = derive2 { name="simsurv"; version="0.1.0"; sha256="08w5kbzx3wlksl17kjg9j4dj1f40ddm32mafi75y5c8bwgcfzqzy"; depends=[]; }; simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; }; simule = derive2 { name="simule"; version="1.1.2"; sha256="06x30rvs6fzbc1bgp4262rjljsisy03annsprfa5mm76mk00xm4v"; depends=[igraph lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; - sinew = derive2 { name="sinew"; version="0.2.1"; sha256="18vdl10r5mhgmdkx01q8xqjxs418ndjzrwgrvnfm98264pkycpk3"; depends=[rstudioapi]; }; + sinew = derive2 { name="sinew"; version="0.3.2"; sha256="0n02lwcb9v8zw1mvdlkwkzwhgbwf7wsb62j6ikmacq5g27b9ws43"; depends=[miniUI rstudioapi shiny yaml]; }; sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; }; siplab = derive2 { name="siplab"; version="1.2"; sha256="0r7gk9qsmbc3ln67cb8p87bq3s2rx6fbavlly1fpzqqv2isf5pq9"; depends=[spatstat]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; - sirt = derive2 { name="sirt"; version="2.1-24"; sha256="12db9dfj759bpi36k9jz7xdr2xv381fxzx28yk23qmw2flhnl5ks"; depends=[CDM coda lavaan lavaan_survey mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; }; + sirt = derive2 { name="sirt"; version="2.2-14"; sha256="1rwjp4ynksfli368llknnl0dg52wjxxfl9n5k5dh5nby6mabqf57"; depends=[CDM coda lavaan lavaan_survey mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; }; sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.46"; sha256="00szc3l69i0cksxmd0lyrs4p6plf05sl4vxs3nl4gkbja5y4lvpc"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sisus = derive2 { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; }; - sitar = derive2 { name="sitar"; version="1.0.9"; sha256="1yjiqykrx0dm0zkssagv50kyp4wj9b0sjmrpgbn9wzimqdb5ijph"; depends=[nlme quantreg]; }; + sitar = derive2 { name="sitar"; version="1.0.10"; sha256="1qsk998fa5839f9yp08sxlj48mzdm46z07x1113q63483k5bnrrc"; depends=[nlme quantreg]; }; sitmo = derive2 { name="sitmo"; version="1.2.1"; sha256="1i4bcri3vz7r49zizzqqw1m188983izvl3ja9q4nblggikif611f"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-2"; sha256="0scfbj33mdqz10rgw6pznxca0hbmg64k53y30lwal957430yflz5"; depends=[data_table lattice latticeExtra]; }; @@ -10046,9 +10244,9 @@ in with self; { sizeMat = derive2 { name="sizeMat"; version="0.3.0"; sha256="0766wxcc1980ivlib2saagl20y9dm0ar7i43qcqk2jpdbbaky33z"; depends=[MASS matrixStats mcmc MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.3.3"; sha256="14yl3y4faiw5g3cql8vra4d8xrxn2fri55zsddlgsnqxf1qar5w1"; depends=[broom dplyr effects forcats ggeffects ggplot2 knitr lme4 MASS merTools modelr nlme psych purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; }; - sjlabelled = derive2 { name="sjlabelled"; version="1.0.1"; sha256="1zimqcgv3n861v9adn0yj919yanjkmvmds03ksyg8mhwr290i2hq"; depends=[broom dplyr haven magrittr purrr tibble]; }; + sjlabelled = derive2 { name="sjlabelled"; version="1.0.3"; sha256="18mbdppprbvmpy9lp38fryxr4db8fgcjyjr7301zd75ffb910gm9"; depends=[broom dplyr haven magrittr purrr tibble]; }; sjmisc = derive2 { name="sjmisc"; version="2.6.1"; sha256="1bk1f0kigyhxp40gjdxj60jmw5x984bdp1k170xw9hqfar29dn7x"; depends=[broom dplyr haven magrittr psych purrr rlang sjlabelled stringdist stringr tibble tidyr]; }; - sjstats = derive2 { name="sjstats"; version="0.11.0"; sha256="1hc53a6gvb1ci0vl0pq8pdpn9m67d7pplc00jsfjdc79p1lh0pgk"; depends=[broom coin dplyr glmmTMB lme4 lmtest MASS Matrix modelr nlme purrr pwr rlang sandwich sjlabelled sjmisc tibble tidyr]; }; + sjstats = derive2 { name="sjstats"; version="0.11.1"; sha256="12xm6x24ddpzil8ck4w4wlhl8riypi6s08p1ifwap6bsp1grbxz0"; depends=[broom coin dplyr glmmTMB lme4 lmtest MASS Matrix modelr nlme purrr pwr rlang sandwich sjlabelled sjmisc tibble tidyr]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skeleSim = derive2 { name="skeleSim"; version="0.9.5"; sha256="1m0jwr63v989dalchiv90sfpi6g19rj0x2zgp0bgmjpq3xyamykf"; depends=[adegenet ape hierfstat igraph markdown pegas reshape2 rmetasim shiny shinyFiles strataG swfscMisc]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; @@ -10063,9 +10261,10 @@ in with self; { sld = derive2 { name="sld"; version="0.3.2"; sha256="0za5pw7ki419ni9pqqzddb10d16nvv5rh5jrkl4f77j0ps2ajylp"; depends=[lmom]; }; sleekts = derive2 { name="sleekts"; version="1.0.2"; sha256="0syk244xrsv8hz5sxm7wizk0kyn1nc6z4c63c8xn57fz130zj75k"; depends=[]; }; slfm = derive2 { name="slfm"; version="0.2.2"; sha256="01n9y6kyl7z1ynckp2hkrv2yl9jf30zcbbi3sx9jrcha557fg1cf"; depends=[coda lattice Rcpp RcppArmadillo]; }; - slickR = derive2 { name="slickR"; version="0.1.0"; sha256="0jk9h58v30cl64sfd5730ccv54bsw39d8d57085wrx1kqadsampy"; depends=[base64enc htmlwidgets xml2]; }; + slickR = derive2 { name="slickR"; version="0.2.0"; sha256="1c9z997fj7yq6nx9il8qrnf7lla66a1z823mxj7y92s5bf5308ar"; depends=[base64enc htmlwidgets xml2]; }; slim = derive2 { name="slim"; version="0.1.1"; sha256="0x9bk6w6lmw15s85gw9g8d1wlb57kkvnmx1wsyasn93x9llkjva1"; depends=[data_table MASS]; }; slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; + slowraker = derive2 { name="slowraker"; version="0.1.0"; sha256="1csikr5kcp62wbhkg9079rshy511r1ql8fqr703yc731ja50pnh7"; depends=[NLP openNLP SnowballC]; }; slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; }; sm = derive2 { name="sm"; version="2.2-5.4"; sha256="0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.2-5"; sha256="1mwahjgslk82f8bl6qcjs1yadhbnqrxxhvkffkgc2fv3s6lh5d9m"; depends=[]; }; @@ -10091,10 +10290,10 @@ in with self; { smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; smnet = derive2 { name="smnet"; version="2.1.1"; sha256="0fa47zgm7jxvs3jfai54wsc6qa9ycqw4f3yr941fvkczwzh4ch02"; depends=[DBI RSQLite spam SSN]; }; smoof = derive2 { name="smoof"; version="1.5.1"; sha256="01jkldmxn86vmcmmz81mdlhpm1m3bddj4sv550a3b4wm1r3gddng"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo RJSONIO]; }; - smooth = derive2 { name="smooth"; version="2.1.0"; sha256="1wv6n9ff7wv9m0pwphd8ymmrwgwg9dj9wnlzx1sazkg0r01bakdf"; depends=[forecast nloptr Rcpp RcppArmadillo zoo]; }; - smoothAPC = derive2 { name="smoothAPC"; version="0.1"; sha256="06lpjp408ggj27yw6mw7f96kxly7r8kzikbsdp0y1gzig1qq8nbs"; depends=[colorspace lmtest quantreg rgl SparseM]; }; + smooth = derive2 { name="smooth"; version="2.1.1"; sha256="113la6byqr6sjr9349z3yyh407mvxhk9d1q7qldw55pkp4mrahac"; depends=[forecast nloptr Rcpp RcppArmadillo zoo]; }; + smoothAPC = derive2 { name="smoothAPC"; version="0.2"; sha256="06f0d4bjygpgcayzg9cxcb5plhsls0ljla2mrmjnjxpq8g3c3cl8"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; }; - smoothSurv = derive2 { name="smoothSurv"; version="1.6"; sha256="1s25gpih0nh8waw4r3iw53n3rc44mlzixkh4i2cykbg5rdrs8pnf"; depends=[survival]; }; + smoothSurv = derive2 { name="smoothSurv"; version="2.0"; sha256="0ypgmqf7mj0x0ibid9qx6cbqn4cpig8333g095b64297bf0syvjc"; depends=[survival]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothie = derive2 { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; }; smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; @@ -10104,7 +10303,7 @@ in with self; { smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; sn = derive2 { name="sn"; version="1.5-0"; sha256="0fh7xjsfd2x8d9lbnss7raldh24b72b3pvcv7zqa1qprzg7zfr01"; depends=[mnormt numDeriv]; }; sna = derive2 { name="sna"; version="2.4"; sha256="1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"; depends=[network statnet_common]; }; - snakecase = derive2 { name="snakecase"; version="0.5.0"; sha256="0940ab0in6q5dibpwbw4q59f8r9wy3pryyhqkkivjn6fkb1hmsyd"; depends=[magrittr purrr stringi stringr]; }; + snakecase = derive2 { name="snakecase"; version="0.5.1"; sha256="0mgnmdjrg3xkhfq5mc29ixpaw12fm4052i5733xc2ch6793ikmpm"; depends=[magrittr purrr stringi stringr]; }; snapshot = derive2 { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh98qpyw1i5sgi1jlafcbcldbqhsdzfz4q10"; depends=[]; }; snht = derive2 { name="snht"; version="1.0.4"; sha256="01gdqicvazfd27f992j4ngv60sqywwplilqxwrsw21wi7y7c6cfv"; depends=[ggplot2 gridExtra mgcv plyr reshape2 zoo]; }; snipEM = derive2 { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[GSE MASS mvtnorm Rcpp RcppArmadillo]; }; @@ -10128,6 +10327,7 @@ in with self; { sofa = derive2 { name="sofa"; version="0.2.0"; sha256="0jjc3r25qprxrhwwzx4b70i51v8gygxwx3x9d1zydx9hw1plk0mb"; depends=[httr jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; + softermax = derive2 { name="softermax"; version="0.3.0"; sha256="0shsd7cbj8j8z65flyddkjdpigyyqpw4j6ljl9pl9hwasksi05gk"; depends=[readr xml2]; }; softmaxreg = derive2 { name="softmaxreg"; version="1.2"; sha256="0y1r4n83sv2744lpli65aip0c0cq823asb8gw9yy9yjjc9sbyr9s"; depends=[]; }; soil_spec = derive2 { name="soil.spec"; version="2.1.4"; sha256="129iqr6fdvlchq56jmy34s6qc2j5fcfir6pa5as5prw0djyvbdv0"; depends=[GSIF hexView KernSmooth pls sp wavelets]; }; soilDB = derive2 { name="soilDB"; version="1.8-7"; sha256="0v0f9yngqjsagk5dw734aigwhld7fpadj6521bdk49j74ha0girr"; depends=[aqp Hmisc plyr raster reshape2 sp XML]; }; @@ -10142,14 +10342,14 @@ in with self; { solidearthtide = derive2 { name="solidearthtide"; version="1.0.2"; sha256="0274f7vyjymx6hd7ik68hznip57ni4cxp1bw7z91v1jzp3ch17rv"; depends=[]; }; solr = derive2 { name="solr"; version="0.1.6"; sha256="0hlysi1yw4l98dcb1shznzrgia9pqzfj0p1hmnfz5gz2j64lf4h4"; depends=[assertthat httr plyr rjson XML]; }; solrium = derive2 { name="solrium"; version="0.4.0"; sha256="1jjvwwgyq335mhc4pff2l604x1k2260zwxl6k6k9lfzgcgqylbbw"; depends=[dplyr httr jsonlite plyr tibble xml2]; }; - solvebio = derive2 { name="solvebio"; version="2.0.1"; sha256="06l50vbkcb496z19yvnb7xi5x9vx69ipf4sy28zaq4xy95b5vljc"; depends=[digest dplyr httr jsonlite mime]; }; + solvebio = derive2 { name="solvebio"; version="2.0.2"; sha256="0j7dpwq2l6g0rabrh01r2xw1rgd8yrmnazwkskv5zayfcxfh5las"; depends=[digest dplyr httr jsonlite mime]; }; som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="2.9"; sha256="0145a7a63wrik1nc716br920mgys959a71w30hxny3nwkbsgw6ij"; depends=[MASS Matrix]; }; + sommer = derive2 { name="sommer"; version="3.0"; sha256="0jfdf4pjkwlm0r6f1njcri7wf4yj9sjgwcg9s3xz17l4fv34vy0x"; depends=[MASS Matrix]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; }; @@ -10166,6 +10366,7 @@ in with self; { sotu = derive2 { name="sotu"; version="1.0.2"; sha256="0aqwkawaydsm91hz13msjg1a5llg7xmv6hxmfmsaganrl7iaym3c"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.4"; sha256="1mxwcr978k11p0dznv1gbvb894nixkl4gvhgj015gcl1s63ar5n4"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.2"; sha256="1ig04hdxwailsp4lv5y9q73x7vb6hl4dw9zlb05gbccvid5vmdsh"; depends=[ineq oce pracma seewave tuneR vegan]; }; + soundgen = derive2 { name="soundgen"; version="1.0.0"; sha256="04hbhyk5b9g4q71z4pa70byx8xxadq7921vigkg3c9hv7yxz550d"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny shinyBS tuneR zoo]; }; source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; sourceR = derive2 { name="sourceR"; version="1.0.1"; sha256="01qxa44s9szaxl0rdcx4p0wn4vby17hdzdjzpsbls3prsnr0jaad"; depends=[assertthat cluster dplyr gplots gtools hashmap R6 reshape2 SPIn tensorA]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.6"; sha256="0l8c6fql82cb246qh7hfgxb4s35qn0qfgy6dzvkx0zkz1cpqvx69"; depends=[]; }; @@ -10174,7 +10375,7 @@ in with self; { spAddins = derive2 { name="spAddins"; version="0.1.7"; sha256="1ci246770j40zzmsjwjqwkwi6b2w5qwb0n4f4wah5rjf6zjwkd5r"; depends=[rstudioapi]; }; spBayes = derive2 { name="spBayes"; version="0.4-1"; sha256="1cypl3kvcr7nwdkq59zpdhkasz0z5r2gk8hr6wf1a1992k8c33ag"; depends=[abind coda Formula magic]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.1"; sha256="0pcfy3w2aqld10w9jdcizcy0rdpmdaj8z7qwpam4s2f6sap1q26b"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; - spData = derive2 { name="spData"; version="0.2.2"; sha256="1997ilf5r52z8k5xqmqqxzxiiiirhwwcmydlfyai3snmn13apc78"; depends=[]; }; + spData = derive2 { name="spData"; version="0.2.5.0"; sha256="1piqnxmvxksd5viasb5l50incf631fgphrnqfp0x17rz3jdrfzvg"; depends=[]; }; spMC = derive2 { name="spMC"; version="0.3.8"; sha256="1glkyv6wmh766ssdlm4z7dck32r0284kwah0ksmmkwxkfw1qx7xb"; depends=[]; }; spNNGP = derive2 { name="spNNGP"; version="0.1.1"; sha256="0b55arvy5xr592bs2082djyzaa48jbv0y85h7nnj479f8c31grqp"; depends=[coda Formula RANN]; }; spTDyn = derive2 { name="spTDyn"; version="1.0"; sha256="0yrnbf9g1n1hrrra2vp6412wfky1bhy3b6raif9k82xvi9p9m6pz"; depends=[coda sp]; }; @@ -10187,7 +10388,7 @@ in with self; { space = derive2 { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; }; spaceExt = derive2 { name="spaceExt"; version="1.0"; sha256="0lp8qmb7vcgxqqpsi89zjy7kxpibg3x2mq205pjmsrbbh7saqzr4"; depends=[glasso limSolve]; }; spacejam = derive2 { name="spacejam"; version="1.1"; sha256="1mdxmfa1aifh3h279cklm4inin0cx3h0z2lm738bai34j6hpvar7"; depends=[igraph Matrix]; }; - spacetime = derive2 { name="spacetime"; version="1.2-0"; sha256="1qd9bvnqknw8kaqz7xr5gkkhi3h1f2dvd70zax44g912nha13f7h"; depends=[intervals lattice sp xts zoo]; }; + spacetime = derive2 { name="spacetime"; version="1.2-1"; sha256="1i6yrmyr9vc5lr99w7qhr0jqdx97ckjqay5g0lqdrk98sygpfl4g"; depends=[intervals lattice sp xts zoo]; }; spacodiR = derive2 { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[colorspace picante Rcpp]; }; spacom = derive2 { name="spacom"; version="1.0-5"; sha256="0b6yh4q9f0ibwlwyckwaya9m645j22x6bdz9mz3chass8qza6bls"; depends=[foreach iterators lme4 Matrix nlme spdep]; }; spacyr = derive2 { name="spacyr"; version="0.9.0"; sha256="1d2bfsmkpb3aqfqiiqdxmw85aqdq7880s0f81vs0jy6i64an90x6"; depends=[data_table reticulate]; }; @@ -10203,20 +10404,20 @@ in with self; { spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.2"; sha256="1kvzfjhf1q5jzlq5d04s7d96j63vnvqqrh8s03rwkl79h1dhqhhp"; depends=[sparklyr]; }; sparkTable = derive2 { name="sparkTable"; version="1.3.0"; sha256="1fc2nihxfrjpmxm9g9296mz5czd3ydvi1v37g8qgb20j7b73c64h"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="0.6.2"; sha256="0lr487y5gb53yh8in5lhpwq9fnmagknzmj2yx02rgmig8qd4974y"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr httr jsonlite lazyeval rappdirs readr rlang rprojroot rstudioapi shiny withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="0.6.3"; sha256="11k8jhlg9n3sb72p5j865plflxfcm4pp15483axhnkck6bhnlb77"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr httr jsonlite lazyeval openssl rappdirs readr rlang rprojroot rstudioapi shiny withr xml2]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; }; - sparr = derive2 { name="sparr"; version="2.1-11"; sha256="1ypfij8fwsj7nf3g5arc9hrhf1fcwwinhrsbfmgwqs29xl3m9m2g"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; }; + sparr = derive2 { name="sparr"; version="2.1-12"; sha256="13mcmbbr9r1i9qgbchi8v0lx90c42x5m1xycqdgwhyinm71swnqw"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; }; sparseBC = derive2 { name="sparseBC"; version="1.1"; sha256="1w60n2875n809lbrn0hd4kdmsyfd64aikgzxchza8b59x77l0psy"; depends=[fields glasso]; }; - sparseFLMM = derive2 { name="sparseFLMM"; version="0.1.1"; sha256="03j1rvgbzmscs043iyzblfk601bv2vf90sfbii14yqm0mrf27r28"; depends=[data_table MASS Matrix mgcv refund]; }; + sparseFLMM = derive2 { name="sparseFLMM"; version="0.2.0"; sha256="0r7080d2s5vrcwi4h11iiapmdl0l59kd0j8r1avmw9x0d0qw6lh8"; depends=[data_table MASS Matrix mgcv refund]; }; sparseHessianFD = derive2 { name="sparseHessianFD"; version="0.3.3"; sha256="13v8zia1i0k6faiz6faikqmlrp16riwv637yygjq2cq8fcm75pyf"; depends=[Matrix Rcpp RcppEigen]; }; sparseLDA = derive2 { name="sparseLDA"; version="0.1-9"; sha256="1k3sw9kc40yxnfss4vrsx34qxmv8ssddyhbfjhxrdldvblhbwchb"; depends=[elasticnet MASS mda]; }; sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0"; sha256="11llmrkq0pnrdphgjvhmg269bq3xbbn4s7kd7xhvk62sigvspkcj"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.1"; sha256="1k4jiday24rdiscprwifrc0py13h707ijavspz15jannvjaz9qdh"; depends=[Matrix]; }; sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-2"; sha256="1bv9ipfs275vr1hmz7g7w4rimvbkg15wjh3xj3cx1zam91k384k9"; depends=[]; }; - sparsebn = derive2 { name="sparsebn"; version="0.0.4"; sha256="0msd12gnxijkgazg4dyfqfravsacskbshp00fa4g2vkzmsjai1y0"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; - sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.4"; sha256="0473pxzb95ygvhwkvs97d0zmfwlmxnxn3xp125bycv3ns3rgpssy"; depends=[Matrix nnet]; }; + sparsebn = derive2 { name="sparsebn"; version="0.0.5"; sha256="19315nzj9pz98498amlhas6ii3vwvn3qxz5a6136nh2xfwfg2bhc"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; + sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.5"; sha256="0hdzrp2wcjl849v7np7ybmyp15zjfqr8gkwhij2qjrpprf7z8s57"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.2.4"; sha256="1sa3yssncbpx8yid5wrnxdq7jl3hy5rskyh60v5x592ijcb2mif0"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm]; }; sparsenet = derive2 { name="sparsenet"; version="1.2"; sha256="106a2q4syrcnmicrx92gnbsf2i5ml7pidwghrpl6926glj59j248"; depends=[glmnet shape]; }; sparsepp = derive2 { name="sparsepp"; version="0.2.0"; sha256="0ibadyv7lchxw3y1dspjnbhc4pin4dxwqj9rdrdxfbvlx0i3jgxr"; depends=[]; }; @@ -10225,7 +10426,7 @@ in with self; { sparsesvd = derive2 { name="sparsesvd"; version="0.1-1"; sha256="09qpky8vxkpycj6c4vn3nqlidhblgksh3n6w8sww4yhn0pm3rzn5"; depends=[Matrix]; }; sparsevar = derive2 { name="sparsevar"; version="0.0.10"; sha256="069r0kbypmx7pw3z2v9l17qidw3d73rzf5zs6yn1adyvpsddjxi8"; depends=[doParallel flare ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsio = derive2 { name="sparsio"; version="1.0.0"; sha256="12nbydgzl3qlanlsfdy8bvg6rxa439lv0z0vbyqssqwky3mmg5c3"; depends=[Matrix Rcpp]; }; - spartan = derive2 { name="spartan"; version="2.3"; sha256="09j5f9f068m83279ncfxpyg8bnk25qjz20a9xlap8dpm50iidr24"; depends=[]; }; + spartan = derive2 { name="spartan"; version="3.0.0"; sha256="1q78l04nbrllrsk14haln5s829rkkhkhmb34xzfgyd8glbi7z4ay"; depends=[e1071 ggplot2 gplots lhs mco mlegp neuralnet plotrix psych randomForest XML]; }; spass = derive2 { name="spass"; version="1.0"; sha256="1pgv4yzbdv475gp53qz40ys731v9960cyxbp84gff6y5f2y4axah"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatcounts = derive2 { name="spatcounts"; version="1.1"; sha256="0rp8054aiwc62r1m3l4v5dh3cavbs5h2yb01453bw9rwis1pj2qm"; depends=[]; }; spate = derive2 { name="spate"; version="1.5"; sha256="1hlh4iwx1lrl8r2gag33z2xdv6k4hg86ch4f0jlqnqkhm9hapshf"; depends=[mvtnorm truncnorm]; }; @@ -10243,8 +10444,9 @@ in with self; { spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; spatialsegregation = derive2 { name="spatialsegregation"; version="2.44"; sha256="02s75q6ylzm6xzr1q23fhps3svlb0ix86dzgr23wf42369gs7h0g"; depends=[spatstat]; }; spatstat = derive2 { name="spatstat"; version="1.52-1"; sha256="17p7pfdi5cxaafbkwxxfnrfpxniymvxqvlp2icy560rs6x90jjjl"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_utils tensor]; }; + spatstat_data = derive2 { name="spatstat.data"; version="1.1-0"; sha256="1iiyqv305gsr0xbnsnbddcymj9j37w6hgmzv6bxx2kwhmq6lqkj6"; depends=[spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="3.5-6"; sha256="0yb3k2szk2z61h2scyj4h78y13qvbd9b1hvwp9n2983w77y0k5dz"; depends=[spatstat spatstat_utils tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="1.7-0"; sha256="17s092dmq6n9j323q48brngx062308090lrgdkf4fzrwl9f2kp77"; depends=[]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="1.7-1"; sha256="1j6r71mcch91rm2ww6kqz5685pancpbwyl33jdzwm23rlpcpvr9l"; depends=[]; }; spatsurv = derive2 { name="spatsurv"; version="1.1"; sha256="0fakhz2qc5vb7ym2ik7hilv8g5fn3z7s16hzngq1n591xza5b74g"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.4.8"; sha256="1f0lradf7a3fjkdhbviw24awpqj1pzw1wfvigrqhnmf0jjw3nng3"; depends=[dplyr sp tibble]; }; spc = derive2 { name="spc"; version="0.5.3"; sha256="0y730vh04j4cyz5zfyx4xqfw07ic1l93197640q543adnmil40vf"; depends=[]; }; @@ -10254,13 +10456,13 @@ in with self; { spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.0"; sha256="1n0lva9brpzxysw6p7l88cj8d46jng2zd7zvr5brqldzd3yl63l9"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="0.6-13"; sha256="1i7igp3csdc9jy4snmivdxhifvy419gv5dky315hdfm7gr65yd7d"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp]; }; + spdep = derive2 { name="spdep"; version="0.6-15"; sha256="14kmr72zlna77q624y7vb6v8f7rxpf0fjpsaspgyapvgjjz41wb4"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.1.3"; sha256="1f34yzj9z4f1dj7pqaayk0mvabzwa6kc3kwi1pmpikl1afgsyv25"; depends=[dplyr lazyeval rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.16.0"; sha256="1nyv6ffrky8cwwlfq0b4w17ibni6xq61zrc1s7s2hizlp41cnscd"; depends=[corpcor MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.3"; sha256="0qh0kkxs6hk344k3fys0g9yy0xl0kwnwl18bgiak53fd1k7whskq"; depends=[animation deSolve raster sp]; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; - speaq = derive2 { name="speaq"; version="2.0.0"; sha256="1yf8pjwr1gn0mh0km7xwpl15619xvn1dasckrd8xiyldi8g3c7ik"; depends=[cluster data_table doSNOW foreach ggplot2 gridExtra MassSpecWavelet mQTL reshape2]; }; + speaq = derive2 { name="speaq"; version="2.1.0"; sha256="1alwqwxx5mmmlqwj5dz9dzzwxcs8hyz85kkmj3ajb3wp09z5dhaq"; depends=[cluster data_table doSNOW foreach ggplot2 gridExtra impute MassSpecWavelet missForest mQTL reshape2 rvest xml2]; }; spec = derive2 { name="spec"; version="0.1.3"; sha256="0i1c5wjrca36zf5ak95i8n57hy1jj8w0qkkpnjqpn3xv3nvqccr2"; depends=[csv encode magrittr]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; speciesgeocodeR = derive2 { name="speciesgeocodeR"; version="1.0-4"; sha256="033877l9sxcvvzpyf9aw19sj8qfscim663j2y2az8bl9c79xw4ph"; depends=[maps raster sp]; }; @@ -10269,12 +10471,14 @@ in with self; { spectral = derive2 { name="spectral"; version="1.0.1"; sha256="0mawgxz1gbzgb3lxm6gfbv3wan0ykziprqym8ajvdjsdq4fwkk2m"; depends=[rasterImage Rcpp]; }; spectral_methods = derive2 { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; + spectrolab = derive2 { name="spectrolab"; version="0.0.2"; sha256="1s9js7q075v81nva475q5jznj8ms39f9yb0mb91q873r3qxwbgxp"; depends=[devtools prospectr RColorBrewer shiny shinyjs]; }; speedglm = derive2 { name="speedglm"; version="0.3-2"; sha256="1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz"; depends=[MASS Matrix]; }; spef = derive2 { name="spef"; version="1.0-5"; sha256="0hbb2vmgx5x135kvb5c525q78m8ccpv4j6hv16v31zka2fjwcj8z"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; + spelling = derive2 { name="spelling"; version="1.0"; sha256="0r293l451b0fxs6yf5ygak6s9m3alsc1cnpwhzf091blhi76s2jr"; depends=[commonmark hunspell knitr xml2]; }; sperich = derive2 { name="sperich"; version="1.5-7"; sha256="1apgq5nsl6nw674dy7bc7r7z962wcmqsia5n67a8n6c5lcgcif3f"; depends=[foreach rgdal SDMTools sp]; }; - sperrorest = derive2 { name="sperrorest"; version="2.0.1"; sha256="0ff5ga1fi7j265940wshd4pjzfbr2maw6dican0sx81wnhs3lniy"; depends=[doFuture foreach future gdata magrittr pbapply pbmcapply purrr ROCR rpart stringr]; }; + sperrorest = derive2 { name="sperrorest"; version="2.1.0"; sha256="1qpjqbifqzw92j5b8sc0bp9rjmx3w3np3gzh88kxqapdbq770w47"; depends=[doFuture foreach future gdata magrittr pbapply pbmcapply purrr ROCR rpart stringr]; }; spex = derive2 { name="spex"; version="0.4.0"; sha256="0b2zcpbjr8lqfsmwvmy4lp88xz16v7fyqx1yv10yhcgxlgw0yw8p"; depends=[quadmesh raster sp]; }; spfrontier = derive2 { name="spfrontier"; version="0.2.3"; sha256="0br54kkva4m3yyqfjh3cs5wf4kk3ax6yg0h8cl5qiy38dvssa5qd"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; @@ -10284,24 +10488,28 @@ in with self; { sphereplot = derive2 { name="sphereplot"; version="1.5"; sha256="1i1p20h95cgw5wqp9bwfs9nygm4dxzsggz08ncjs1xrsvhhq9air"; depends=[rgl]; }; sphet = derive2 { name="sphet"; version="1.6"; sha256="0149wkak7lp2hj69d83rn05fzh9bsvyc1kyg0d3b69sx92kqlwr0"; depends=[Matrix nlme sp spdep]; }; spi = derive2 { name="spi"; version="1.1"; sha256="0gc504f7sji5x0kmsidnwfm7l5g4b1asl3jkn2jzsf2nvjnplx1z"; depends=[]; }; + spiderbar = derive2 { name="spiderbar"; version="0.2.0"; sha256="1lhzj2fvn83plnifwvmdkjf3zpmb5bvqh6ddzf9jhzmfsqa46h7x"; depends=[Rcpp]; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; }; spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-11"; sha256="1f16jvdj6kbiiypnbbj10nj7l88kkrxasrribqpjv7ai62dlximn"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; spikes = derive2 { name="spikes"; version="1.1"; sha256="080sna0sgii61kai5sirs6cijnvk1012djwfw705di9y2lvk1hqk"; depends=[emdbook]; }; spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; - spind = derive2 { name="spind"; version="2.1.0"; sha256="0mq7c0ps62498cjwxwask3a7mggvcvzhkglw6alps9vz3p1qmi3i"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje sp splancs stringr waveslim]; }; + spind = derive2 { name="spind"; version="2.1.1"; sha256="0d0pjjipnn1jkdi70npfqssz7m72h68dshg7gzpch8ycq8iqz9sz"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje sp splancs stringr waveslim]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; splancs = derive2 { name="splancs"; version="2.01-40"; sha256="0qs3lwyllrkahnvqbm8bzrf03bm9zk4s7p1n19s638y4xf0l6x3r"; depends=[sp]; }; - splines2 = derive2 { name="splines2"; version="0.2.5"; sha256="048c43dhrri0xc02897jxgqw7c5ai2nyylhx3bvwsqg0hrj3c7rv"; depends=[]; }; + splashr = derive2 { name="splashr"; version="0.4.0"; sha256="0k6ylq4vrs4ymr8cjvwm4id1kkng76hlg4bzxak4sd9sjk914xp2"; depends=[clipr curl docker formatR HARtools httr jsonlite lubridate magick openssl purrr scales stringi xml2]; }; + splines2 = derive2 { name="splines2"; version="0.2.6"; sha256="1a58pl1a0lc7ljs9q9p3licpzzfr75lcahfzc3hdzhg3zn6m56cx"; depends=[]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.1"; sha256="0gz65acnkil9xjspl2kzpzyhj7lslga9g3p0k79xh25ia6qal5ws"; depends=[lbfgs]; }; splithalf = derive2 { name="splithalf"; version="0.2.0"; sha256="1bpw8mw88aryk4n0bdm4f356wsix6npdpl91qfbwayhdh0g5302f"; depends=[plyr]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.2"; sha256="0m9karfh0pcy0jj3dzq87vybxv9gmcrq5m2k7byxpki95apbrsmg"; depends=[data_table]; }; splm = derive2 { name="splm"; version="1.4-6"; sha256="1vclsx622zq7kdgb84dd74i6a1b27d0jnx29blzba77d24adyzmh"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; + splot = derive2 { name="splot"; version="0.3.0"; sha256="1amz7b9bcc1qr8wa650j1v5bbqq4d0q5xwmxf9rv6npra6c6db7w"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-1"; sha256="0zgk9qd825zqgikpkg13jm8hi6ncg48qw5f985bi145nwy9j19xs"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; }; splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-137"; sha256="0bpzv6a05hnqnnz2znnkb3f34r56krhc595zjnn82azxj4a53njh"; depends=[]; }; splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-74"; sha256="0aikw6ckc0a7lrgjlcdmqspgrx0fc4iysd7jynd2lsf1hxy4pz35"; depends=[splusTimeDate]; }; + spm = derive2 { name="spm"; version="1.0.0"; sha256="0q87sbp39axmlnj15srnsysm7d9rpm5q6zic0h6hc1xwp205v0sf"; depends=[gbm gstat psy randomForest sp]; }; spm12r = derive2 { name="spm12r"; version="2.3.1"; sha256="1fkm961phkxy5rmv2vav0a7vy9j89i0gwgfi2rjg682xl473j3gk"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; - spmoran = derive2 { name="spmoran"; version="0.1.1"; sha256="1l5rigjvh1swj203fh410gsi3vdw42z1544g47jx9cs4s0273saa"; depends=[doParallel fields foreach ggplot2 Matrix vegan]; }; + spmoran = derive2 { name="spmoran"; version="0.1.2"; sha256="19rl14w0zry649c3kgvrmb7bsw3dxsprf52naiqfxxs7qy3pxcm2"; depends=[doParallel fields foreach ggplot2 Matrix vegan]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spocc = derive2 { name="spocc"; version="0.7.0"; sha256="0ar107c7snbh1iaib3xddng88861h3gc56whicx5krl3zf2xgjqa"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; }; spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; @@ -10318,6 +10526,7 @@ in with self; { spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; spsurvey = derive2 { name="spsurvey"; version="3.3"; sha256="1xpjimqkrwm77amqza4713psmg86bvz08gxdi35advq4w614f2w1"; depends=[deldir foreign Hmisc MASS rgeos sp]; }; spt = derive2 { name="spt"; version="1.13-8-8"; sha256="18s74pxfmsjaj92z2a34nq90caf61s84c616yv33a0xvfvp32qr5"; depends=[]; }; + sptemExp = derive2 { name="sptemExp"; version="0.1.1"; sha256="0a4y355j24sll8jmm17lh4j13k21b3nlalsxzpzx2gp5xw1x7jr6"; depends=[automap BayesX BayesXsrc bcv deldir doParallel foreach limSolve ncdf4 plyr R2BayesX raster Rcpp RcppEigen rgdal rgeos sp SpatioTemporal]; }; sptm = derive2 { name="sptm"; version="16.7-9"; sha256="0x8824zccrwdl38jbhq8skzcvxb7a3b1zggkd7gmyjd94xvxll9k"; depends=[kyotil survey survival]; }; spuRs = derive2 { name="spuRs"; version="2.0.0"; sha256="0lbc3nny6idijdaxrxfkfrn40bxfyp9z3yl9mwb1k6cyd10v5mfj"; depends=[lattice MASS]; }; spup = derive2 { name="spup"; version="0.1-1"; sha256="0iwmydvd6bwpyr4q3hk2hlvgrvpzrdhnbq0frxadwcaaap75pfv0"; depends=[gstat magrittr mvtnorm purrr raster whisker]; }; @@ -10345,7 +10554,7 @@ in with self; { ssmrob = derive2 { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[MASS mvtnorm robustbase sampleSelection]; }; ssmsn = derive2 { name="ssmsn"; version="0.2.0"; sha256="0fzqdkqhj5hh8pzcwh7i0rglgdq22a5mriyis8r1vhlkdc7n5m39"; depends=[MCMCpack]; }; sspline = derive2 { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; }; - sspse = derive2 { name="sspse"; version="0.5-1"; sha256="0gih9d0g4kp08c4v01p699lavb491khyj16i8vldhcb194bvs8m5"; depends=[coda]; }; + sspse = derive2 { name="sspse"; version="0.5-2"; sha256="06sysp4jyf79y53i7xl5yvbpvfxrf929zhf3s54wsi6014mbkh23"; depends=[coda]; }; sss = derive2 { name="sss"; version="0.1-0"; sha256="1qg56g60h8c52l8lpxihxsdgnqkxiag1mzh3p388r9hhff7g3g0k"; depends=[assertthat xml2]; }; ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; @@ -10367,7 +10576,7 @@ in with self; { starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starmie = derive2 { name="starmie"; version="0.1.2"; sha256="06cvl8gk78c55kcf4rd27d4gfzh2lcg7ldynvx4hclvbw7ak9zdq"; depends=[combinat data_table ggdendro ggplot2 ggrepel gridExtra iterpc label_switching MCL MCMCpack proxy purrr readr stringr tidyr]; }; startR = derive2 { name="startR"; version="0.0.1"; sha256="12y57n3yip5rz4rln41896a15zv5b4c67k164282fh1p6ww9gr3r"; depends=[abind bigmemory future]; }; - startup = derive2 { name="startup"; version="0.6.1"; sha256="1hxncw08sw9278vdpg8q1gmg2y3crkj9h8cbvf77pgm3jzswpbbc"; depends=[]; }; + startup = derive2 { name="startup"; version="0.7.0"; sha256="0g5wdj31vq83j6hanhckpxxwb8s7i8d5vavwvx9qdci848diid4h"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.4"; sha256="1r9dqrfznsrj7s11m56hkzgfnw3qcgzh07pqipl007zr2av9xwqw"; depends=[]; }; statGraph = derive2 { name="statGraph"; version="0.1.0"; sha256="13wfylb92lzw08fn3p000v87abs7ij2rb82np1rkgsl8w2kica73"; depends=[igraph MASS]; }; statar = derive2 { name="statar"; version="0.6.5"; sha256="0vmdrdq6db16vfl0rb39x8yfnbdzpcrvywfgp4lss6jby3nvjwd9"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyr]; }; @@ -10383,10 +10592,10 @@ in with self; { statnet_common = derive2 { name="statnet.common"; version="4.0.0"; sha256="0yw6l5b4qv0jqlg4zyczas7m12a5pyqghs6ydxy2f6v6vxkijvi0"; depends=[]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.4.0"; sha256="0gqvvpz9435wakpgf5jsznwgd3fix1vyabh87bnnfsm3pfs7rf2x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statprograms = derive2 { name="statprograms"; version="0.1.0"; sha256="1jm8vnzccx34rhypkc5brx52k0f0g4z9cckzib43i5fcqd4skib6"; depends=[]; }; - statquotes = derive2 { name="statquotes"; version="0.2"; sha256="05qsffbgpgzrhk2nbyfa4a63ad06aj09bzcc11h9dl3sdz6jj7gr"; depends=[stringr tidytext wordcloud]; }; - statsgrokse = derive2 { name="statsgrokse"; version="0.1.4"; sha256="1kxkpddmgyyg51fhmllgahnhwixwv6b95nx0viyqa9c5ngix2gd5"; depends=[httr jsonlite stringr]; }; + statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; + statsDK = derive2 { name="statsDK"; version="0.1.0"; sha256="00idjwn003gcfj78jf92sqfpaan9i65zgld6mfp24xqwgkblw8jd"; depends=[dplyr ggplot2 jsonlite rjstat stringr tibble tidyr tidyverse]; }; stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; - stdReg = derive2 { name="stdReg"; version="2.1"; sha256="0h9h64vk52l7ai50f4pih0qdshsqsx5cm3fj1fjrcpbsfq7azg34"; depends=[data_table survival]; }; + stdReg = derive2 { name="stdReg"; version="2.2.0"; sha256="166f0icz2gmnyp5fd824gylksjizyp2rm2h6i59h8q6brq3r79q8"; depends=[data_table numDeriv survival]; }; stddiff = derive2 { name="stddiff"; version="2.0"; sha256="0mik01a8agcdpjq4r7lcdf3w2jcy6s9gx9zl7plzvnl2r3s5xw5b"; depends=[]; }; stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; @@ -10402,7 +10611,7 @@ in with self; { stilt = derive2 { name="stilt"; version="1.1.0"; sha256="0qap66gl1iabwvar4fw7r159slmgzriljn4ikp3pas65y0pw2dz6"; depends=[fields]; }; stinepack = derive2 { name="stinepack"; version="1.3"; sha256="0kjpcjqkwndqs7cyc6w62z1nnkqmhkifz2w0bi341jh0ybmak4fq"; depends=[]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; - stm = derive2 { name="stm"; version="1.2.2"; sha256="1kv4plz9i446s8vdrh71lk49gvvl6v5dviym4qh63iwkipgz2fy1"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; + stm = derive2 { name="stm"; version="1.3.0"; sha256="07q8kgw46rhj2lgfcxjz2z7b65z1syh5q94lfzp3zqd7lcbfp5yy"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmBrowser = derive2 { name="stmBrowser"; version="1.0"; sha256="0jfh0c835a2sxn2cqlmwdlzj2g2dmkfl2z3pkv4fc1ajggw2n7g2"; depends=[httr jsonlite rjson stm]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; stmgp = derive2 { name="stmgp"; version="1.0"; sha256="1v6ahg4icyrz8p0lfiyi2x90allhjvcq8rycinas5mffg7xgpv7d"; depends=[MASS]; }; @@ -10410,12 +10619,11 @@ in with self; { stoRy = derive2 { name="stoRy"; version="0.1.1"; sha256="0ymk5skzsga0jr9chl52njlb23803a7cij0iaw6crssdf3sk226s"; depends=[data_tree R6]; }; stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochprofML = derive2 { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; - stochvol = derive2 { name="stochvol"; version="1.3.2"; sha256="08vn2ifbb7yc3b7c5pgklp9wr98vx1gv60gpsqba32xr6ijn49vd"; depends=[coda Rcpp RcppArmadillo]; }; - stockPortfolio = derive2 { name="stockPortfolio"; version="1.2"; sha256="0k5ss6lf9yhcvc4hwqmcfpdn6qkbq5kaw0arldkl46391kac3bd1"; depends=[]; }; + stochvol = derive2 { name="stochvol"; version="1.3.3"; sha256="0cg61djjfw4jmq71g8kddrihdy9n2vlpzlf7kl2f3p8njc1f8kk2"; depends=[coda Rcpp RcppArmadillo]; }; stocks = derive2 { name="stocks"; version="1.1.1"; sha256="1qwd16bw40w2ns7b0n9wm8l344r4vyk27rmg0vr5512zsrcjkcfb"; depends=[rbenchmark Rcpp]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.0"; sha256="1pxkb0ijx04c4bk6szxhj8lxq6x76m8pyhxpf8xq63h4gh57fxh3"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; }; - storr = derive2 { name="storr"; version="1.1.1"; sha256="0n2shzv7hblff7wrh7ls3q5zp97pisz935laqmyg201vhlypnqfi"; depends=[digest R6]; }; + storr = derive2 { name="storr"; version="1.1.2"; sha256="1bv5qriqh1w8rishwxkm9xzz30ildrpcvnh4g3d8khh5r8dlz5lg"; depends=[digest R6]; }; stosim = derive2 { name="stosim"; version="0.0.12"; sha256="0c4sj5iirm542hx782izfdmy2m3kl5q28l10xjj0ib4xn5y6yx3c"; depends=[Rcpp tcltk2]; }; stplanr = derive2 { name="stplanr"; version="0.1.9"; sha256="171m2d22wmcchh52sddd8rsna37718019cwb30d2j3zm8wcairgn"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sp stringi stringr]; }; stpm = derive2 { name="stpm"; version="1.6.8"; sha256="0gifkrpp8n4r31i4dfvjfq7w0l6jfid43i94ygqwwv0ca583aw4y"; depends=[mice nloptr Rcpp RcppArmadillo sas7bdat survival]; }; @@ -10473,8 +10681,8 @@ in with self; { sugrrants = derive2 { name="sugrrants"; version="0.1.0"; sha256="12dqayn8hwbdqqn13v4zywn2h96q1wya4g04qs586qm6wx4p64nk"; depends=[dplyr ggplot2 lubridate magrittr purrr readr rlang tidyr timeDate]; }; summariser = derive2 { name="summariser"; version="0.1.0"; sha256="0a6wyb0r1i0cynld002q96ylr58jz76n5jqjz8gm6a3csjn9qss7"; depends=[dplyr ggplot2 lazyeval plotrix]; }; summarytools = derive2 { name="summarytools"; version="0.6.5"; sha256="1ddvwn0rfyrlfar1kpwggxnpp9dpswdy8v5alcv3kanp540hnmb1"; depends=[Hmisc htmltools matrixStats pander pryr rapportools rstudioapi xtable]; }; - sunburstR = derive2 { name="sunburstR"; version="1.0.0"; sha256="0n6nw35n8c453nminv0kzpfxxhwhh6hdmjja0wg1m2kpai8aj2kw"; depends=[d3r dplyr htmltools htmlwidgets]; }; - suncalc = derive2 { name="suncalc"; version="0.1"; sha256="173yzrzayvc2hidy38arjnsl2344wh80nc355nip9mxd1wwddbzy"; depends=[V8]; }; + sunburstR = derive2 { name="sunburstR"; version="1.0.2"; sha256="16z2c6xaf1mss5qygwpacn1slqzlkb502d1rw40m48v5akfg93sx"; depends=[d3r dplyr htmltools htmlwidgets]; }; + suncalc = derive2 { name="suncalc"; version="0.2"; sha256="0l62zdc9hqjyrd1nphdx57pi64ncw6j389hxbd1xnyrcnszlnwp0"; depends=[V8]; }; supc = derive2 { name="supc"; version="0.1"; sha256="1cq0lr04m409xr3i1hphww4ldr8z3kqq2gmp7hm3yp0iz2gy3m9a"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; @@ -10488,7 +10696,7 @@ in with self; { support_BWS2 = derive2 { name="support.BWS2"; version="0.1-1"; sha256="1jay1ak8242vn9a0ippfdd48vdxqqz9j8frbgf5ncffdmzzn1n21"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; - sure = derive2 { name="sure"; version="0.1.2"; sha256="0dgilavv8hq9szqz9km4fyqkc06spb5v37db5fs70ybxcisqg99f"; depends=[ggplot2 goftest gridExtra]; }; + sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; }; surface = derive2 { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; }; surrosurv = derive2 { name="surrosurv"; version="1.1.15"; sha256="0ns189h33akzl8rs53yg9g1975133wv0csn5cg0lp26b2sh9qp1x"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; }; surv2sampleComp = derive2 { name="surv2sampleComp"; version="1.0-5"; sha256="0pk70q33il9clz0ikzx1cypg5ygnsqp5hgk67xczzbidksjzs4dn"; depends=[flexsurv plotrix survival]; }; @@ -10501,7 +10709,7 @@ in with self; { survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; survMisc = derive2 { name="survMisc"; version="0.5.4"; sha256="1m24vnhxk410h117mz056j8xkhp1ivjn5wvpprc0rqnd374z6c84"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; - survPresmooth = derive2 { name="survPresmooth"; version="1.1-9"; sha256="146ni0xnqd4kfxfxm8nkrgk6v4nrf2hpbb957zh10kmvaa5f9mij"; depends=[]; }; + survPresmooth = derive2 { name="survPresmooth"; version="1.1-10"; sha256="0m1037v857g140lypck5zq2zf52rkdxzaqlj9kjn7h7lp6gif6ia"; depends=[]; }; survRM2 = derive2 { name="survRM2"; version="1.0-2"; sha256="0pvp65c1kkbkcci4l3cvq4a5krmv58jwb9abz5225ql6jyawzlsw"; depends=[survival]; }; survSNP = derive2 { name="survSNP"; version="0.24"; sha256="0mzwcp8zfqvsiapa446si9qb6wyymnw5zj6acj6f2cfjpyi76k4w"; depends=[foreach lattice Rcpp survival xtable]; }; surveillance = derive2 { name="surveillance"; version="1.14.0"; sha256="0gx6ry2qyapn5lwk5hgl7pdijpqnpc0ccp623g79lzwx98w9rp4k"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; @@ -10523,6 +10731,7 @@ in with self; { survsim = derive2 { name="survsim"; version="1.1.4"; sha256="16njbqlzmk34zrh485kc0a52yacdyj9z4z4a9zcq1z5psm87c58m"; depends=[eha statmod]; }; survtmle = derive2 { name="survtmle"; version="1.0.0"; sha256="1sdp88br1ry6yzzav67787n0clpq6vjffxqpkvld93dyvmlb6zb1"; depends=[ggplot2 Matrix plyr stringr SuperLearner tidyr]; }; survutils = derive2 { name="survutils"; version="1.0.0"; sha256="1dha1i2k9dyc9m9awqiq2ypy617zmw9yflfzv182z5fpd491ghrv"; depends=[broom dplyr ggplot2 lazyeval magrittr purrr survC1 survival]; }; + sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; }; svDialogs = derive2 { name="svDialogs"; version="0.9-57"; sha256="1qwnimzqz7jam3jnhpr90bgwp9zlsswy2jl17brdpsrpiwcg6jlr"; depends=[svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; }; svGUI = derive2 { name="svGUI"; version="0.9-55"; sha256="1fkkc12mhcbn3s2wzk0xdsp8jl2xmn48ys2an8jhxbww3gplk1rq"; depends=[]; }; @@ -10537,19 +10746,19 @@ in with self; { svWidgets = derive2 { name="svWidgets"; version="0.9-44"; sha256="18k06wldcg6xpyf8nz9rdbig5nhvghn7zgf1316413kq3v90vz7b"; depends=[svMisc]; }; svapls = derive2 { name="svapls"; version="1.4"; sha256="12gk8wrgp556phdv89jqza22zmsnachsydr5vlz38s664d2lplbg"; depends=[class pls]; }; svcm = derive2 { name="svcm"; version="0.1.2"; sha256="1lkik65md8xdxzkmi990dvmbkc6zwkyxv8maypv2vbi2x534jkhl"; depends=[Matrix]; }; - svd = derive2 { name="svd"; version="0.4"; sha256="06bw4nypj9p57py2vw26yhzn3gw7clvby1mxbg2s2wj3jyay47p5"; depends=[]; }; + svd = derive2 { name="svd"; version="0.4.1"; sha256="00plnwrjnp3majssr3qbz2zp25z9cfivgpggyfvy4lnc4av5qn3g"; depends=[]; }; svdvis = derive2 { name="svdvis"; version="0.1"; sha256="1z3z86izl2gpxllpx56vn6kkdg9cjjikfd90hdjnfi4bmmpx50dn"; depends=[GGally ggplot2 gridExtra RColorBrewer reshape2 scales]; }; svdvisual = derive2 { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; }; svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; }; svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.3"; sha256="09gfa2943bvmjpnhnc2nr85wddkv662k30pxsqvvvq1va64rzpkc"; depends=[htmlwidgets]; }; svgViewR = derive2 { name="svgViewR"; version="1.2"; sha256="0h3smaplnkkvbl9c6lwl67jbk34m6sygkh2d82xz66hbyw2i6q7k"; depends=[]; }; - svglite = derive2 { name="svglite"; version="1.2.0"; sha256="1s1gvmlmmna5y4jsn9h6438pg5b86fl4nwfvkgm6n4h6ljfgqyx3"; depends=[BH gdtools Rcpp]; }; + svglite = derive2 { name="svglite"; version="1.2.1"; sha256="1bws3lc4hlhln11zd7lalhiyc43yk6c6vrzy41fkxk1dkjazfx51"; depends=[BH gdtools Rcpp]; }; svmadmm = derive2 { name="svmadmm"; version="0.3"; sha256="15ccda1r9cc6v30j37i052rdwxgw0wg37hwyn2vp8c7bkr0ybgkm"; depends=[kernlab]; }; svmpath = derive2 { name="svmpath"; version="0.955"; sha256="02j5xs4gg8k16imnwk6aram168cv1dqdrky3bszyc98l7xd0nlrj"; depends=[]; }; svs = derive2 { name="svs"; version="1.1.0"; sha256="0575msaxg04ck76mbr815m29y895qvg8b9qg4y0ggv6b1lvwp5p6"; depends=[gtools]; }; svyPVpack = derive2 { name="svyPVpack"; version="0.1-1"; sha256="15k5ziy2ng853jxl66wjr27lzc90l6i5qr08q8xgcs359vn02pmp"; depends=[survey]; }; swCRTdesign = derive2 { name="swCRTdesign"; version="2.1"; sha256="0c5pya5jgpj5ncrvpzahhrbhl7b39w19f3vl06r8q0nandbn7rwq"; depends=[]; }; - swamp = derive2 { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots impute MASS]; }; + swamp = derive2 { name="swamp"; version="1.3.1"; sha256="1l4rk79hbggn31y5skslqsz9bv7lmya4q5ligki3x1677345hyhv"; depends=[amap gplots impute MASS]; }; swapClass = derive2 { name="swapClass"; version="1.0.1"; sha256="0wg6km261xdywakxi64dw4wwprbrkw217q4c6622z0mgm9sjgpym"; depends=[inline]; }; sweep = derive2 { name="sweep"; version="0.2.0"; sha256="11hyv48hldacdbi7avvgmrqk9andjkabdswf1blfb4qyc2z0199v"; depends=[broom devtools dplyr forecast lazyeval lubridate tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.1"; sha256="014zbp6a66gv7b0f2gmzvifllz266zrc14ihawksvyp1mcxz2ipg"; depends=[lubridate stringr]; }; @@ -10568,6 +10777,7 @@ in with self; { sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.0"; sha256="0p3w7ipyrqrh7nf52h8qmr4fikyinm8an7npmcb7kwjd59rcy554"; depends=[MASS Matrix sybil]; }; sylcount = derive2 { name="sylcount"; version="0.1-0"; sha256="1dxbqbjyvkg7cx234icby9fjdjz1z4l4crqd7kv8m05fv69pg224"; depends=[]; }; syllable = derive2 { name="syllable"; version="0.1.3"; sha256="1ymnczwx58h720hsm0s9zq3ddwg6gn6bgg0m8zw24i0nlivx0yjg"; depends=[data_table stringi textclean textshape]; }; + sylly = derive2 { name="sylly"; version="0.1-2"; sha256="04jbz0rzn2vx9xblfzxyk6x9l1g2s27cdq5ai0gbwgakjn6nx4j7"; depends=[]; }; symDMatrix = derive2 { name="symDMatrix"; version="1.0.0"; sha256="0xss7f7hkrf2afchccfavymylfybnp9nxawqxd2vdjni95kbd595"; depends=[]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.4-2"; sha256="1vn7r7b7yyn2kp8j3ghw50z49yzvwhm0izc6wgc7a99300xrr77s"; depends=[ade4 cluster clusterSim e1071 rgl shapes XML]; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; @@ -10581,7 +10791,7 @@ in with self; { synthACS = derive2 { name="synthACS"; version="1.0.1"; sha256="0jbhiadgc8f6h7ga685cm5i8y59lf76r8sgd629xfjj4jxn8ckdm"; depends=[acs data_table Rcpp]; }; synthpop = derive2 { name="synthpop"; version="1.3-2"; sha256="0rprvrixpnzc2yxgvp8gq72k145hb1f37fzp9lbpjc7yxy7hncmz"; depends=[classInt foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; }; sys = derive2 { name="sys"; version="1.4"; sha256="0x9npf3hybrh0vsr2bxax31k3x99p6klrc1gplp295mjiqxiy7sk"; depends=[]; }; - sysfonts = derive2 { name="sysfonts"; version="0.6"; sha256="02cf5n4s6knn887nx3mr8fd9cqy67i107c889w5j028l6qk43jxr"; depends=[]; }; + sysfonts = derive2 { name="sysfonts"; version="0.7.1"; sha256="04kimfdp895c6839ss7lqahd77jx3lz2gd3i849c2vkwi89v6vs9"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; systemfit = derive2 { name="systemfit"; version="1.1-20"; sha256="1qzgx4hn6f71hnk70ccf6inajprrb6my5af8q2manz41577z0ka7"; depends=[car lmtest MASS Matrix sandwich]; }; systemicrisk = derive2 { name="systemicrisk"; version="0.4"; sha256="1qpimrfr75l6phr425m7av02l57yyn1n2if7h26cndf9ynmv6vz1"; depends=[lpSolve Rcpp]; }; @@ -10621,7 +10831,7 @@ in with self; { tcR = derive2 { name="tcR"; version="2.2.1.11"; sha256="1wyxjwyba08m80g2c40sdg3d5brs3qmq8azb6vzwh2wmgqlb5400"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; tcgsaseq = derive2 { name="tcgsaseq"; version="1.6.2"; sha256="1cnakn8v0ijsq7bxw38fiab32cxcfyfm6k30ypsb3rr82hb8kh0l"; depends=[CompQuadForm ggplot2 GSA KernSmooth]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; - tclust = derive2 { name="tclust"; version="1.2-7"; sha256="1mvqr280c6kwpg98byd0r1y0qf238xn2x15y8npqch6lpcszlb3x"; depends=[cluster mclust mvtnorm sn]; }; + tclust = derive2 { name="tclust"; version="1.3-1"; sha256="1li62wynv81kb17fx7nk63a26qlb78l8fdf63in8yzcl7fkpji7y"; depends=[cluster mclust mvtnorm sn]; }; tcpl = derive2 { name="tcpl"; version="1.2.2"; sha256="1f32qq5816qkyx3n16vgf13g2piv2pqn2nki3c91vg51bwfap7z1"; depends=[data_table DBI numDeriv RColorBrewer RMySQL RSQLite]; }; tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; tdr = derive2 { name="tdr"; version="0.11"; sha256="1ga1lczqj5pka2yz7igxfm83xmkx7lla8pz6ryij0ybn284agszs"; depends=[ggplot2 lattice RColorBrewer]; }; @@ -10639,10 +10849,10 @@ in with self; { tensorA = derive2 { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.1"; sha256="1rnsff1ypwhn5z0xsxyk2z7jl6igscma1a0w613i81qf37iy81ba"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.1"; sha256="1w8wl3s48wnxmahaklzkipsj3hrwzch8dp084j0zmk6rpbl1q4b7"; depends=[JADE Rcpp RcppArmadillo tensor tsBSS]; }; - tensorflow = derive2 { name="tensorflow"; version="1.3"; sha256="1wivd19jxm2l4iij2cad3hiwb78821dsjlz2bcvrfg8qk4h2pb06"; depends=[config jsonlite processx reticulate tfruns yaml]; }; + tensorflow = derive2 { name="tensorflow"; version="1.3.1"; sha256="12r2bck3vz58cx8fznivda456g3f4xscai4hxcxv64yyz0gr8y1c"; depends=[config jsonlite processx reticulate tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.0"; sha256="00zqklz3hqjv20giwqnd1d62x5hdm620hfdkn1x75i87dv92qn8m"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensr = derive2 { name="tensr"; version="1.0.0"; sha256="05gclhljflkz98hgiq5bgbqjz8icxbdq6b84bn2995cx7v0x85ds"; depends=[]; }; - tergm = derive2 { name="tergm"; version="3.4.0"; sha256="19658k5570z8yxpklbbl87a7pd8i4yygi0ky8lgzb8qymds90v4s"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; + tergm = derive2 { name="tergm"; version="3.4.1"; sha256="10sanqbnqdyqafjjcwm99zfnpgrv18z4y2rgaq5wqq7nni184hfm"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; termstrc = derive2 { name="termstrc"; version="1.3.7"; sha256="12bycwhjrhkadafcckc30jr0md0ssj21n4v75yjhy21yvqjx1d7a"; depends=[lmtest Rcpp rgl sandwich urca zoo]; }; ternvis = derive2 { name="ternvis"; version="1.1"; sha256="16q1a1ns7q0d46js2m1hr6zm8msg3ncgp8w7yrwch11xq0759sb4"; depends=[dichromat mapdata maps maptools quadprog]; }; tesseract = derive2 { name="tesseract"; version="1.6"; sha256="1apcmbkrbyrcdjc39w46shbic404pnkmqqdr0bdp193svp5df8rb"; depends=[curl digest rappdirs Rcpp]; }; @@ -10652,7 +10862,7 @@ in with self; { testit = derive2 { name="testit"; version="0.7"; sha256="07qsnhghdgyxdknzq7ngpkf3qw9939m3lvk9dv9nk2zypy4jhcq3"; depends=[]; }; testthat = derive2 { name="testthat"; version="1.0.2"; sha256="0pj1r01x4ny4capr83dfa19hi5i2sjjxky99schzip8zrq5dzxqf"; depends=[crayon digest magrittr praise R6]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; - texPreview = derive2 { name="texPreview"; version="1.0.0"; sha256="1i34w1804p3qwmijj2lqmfjy909axfp8icllr1nilfqbsrrmssbi"; depends=[magick magrittr rstudioapi svgPanZoom xml2 xtable]; }; + texPreview = derive2 { name="texPreview"; version="1.1.0"; sha256="085aa9qgnmf3mqan2pff0gcdrz7kxd84r12lz780r1mr05ckk8zk"; depends=[magick rstudioapi svgPanZoom xml2]; }; texmex = derive2 { name="texmex"; version="2.3"; sha256="0hh633hlzmjrlind51kjs7s1zpx8bwcwfa93yl4swfvn501j1hy9"; depends=[ggplot2 mvtnorm]; }; texmexseq = derive2 { name="texmexseq"; version="0.3"; sha256="08zjsb541xqqs3lj7avx5147g2d0bh3v036x615srjx2pbxzhsvg"; depends=[dplyr ggplot2 testthat]; }; texreg = derive2 { name="texreg"; version="1.36.23"; sha256="0yxaqimd7cyfrfpia6fnqm15lgs0bf5zyjzmnfm1v4qmf8kj8x6v"; depends=[]; }; @@ -10669,14 +10879,14 @@ in with self; { textreadr = derive2 { name="textreadr"; version="0.5.1"; sha256="03j69xn5ligqypkkhj4w0avl4nzn5c87hz3ycz7cwlm2symkwadw"; depends=[antiword curl pdftools readxl rvest textshape xml2]; }; textreg = derive2 { name="textreg"; version="0.1.4"; sha256="0k7hpvvhacz29d3mvnygg6rqmh9f3ghkcp7kjmvv9jnr2ipw2j21"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; - textshape = derive2 { name="textshape"; version="1.3.0"; sha256="1pp80zfnbwgslawi0jnkg1xdqcs5qxv5inilx2diy9g11534pxng"; depends=[data_table slam stringi]; }; + textshape = derive2 { name="textshape"; version="1.5.0"; sha256="0hvp3mz7j2qkw38jg9cj92ikhyic1c9w8jk07z3vh3f5cm1klvbm"; depends=[data_table slam stringi]; }; textstem = derive2 { name="textstem"; version="0.0.1"; sha256="09010a5flly5kiifx2jha5zvwncpk1xsgx2idipjnrav01plhin2"; depends=[dplyr hunspell koRpus lexicon quanteda SnowballC textshape]; }; textutils = derive2 { name="textutils"; version="0.1-6"; sha256="0xvsd6pfg4kv40l14xcvmirqiq8rmky4s8v8diagzri3a7i45nqn"; depends=[]; }; tfer = derive2 { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; }; tfplot = derive2 { name="tfplot"; version="2015.12-1"; sha256="1x007j6ibbzfr0kncvsr4c7295jv3c4amg2dpyjvdir9h665nc23"; depends=[tframe]; }; tframe = derive2 { name="tframe"; version="2015.12-1"; sha256="0k0favda3z6zdg7ykc2nnl28gxz7sfzbyr5pcifiyi984pa2zgfx"; depends=[]; }; tframePlus = derive2 { name="tframePlus"; version="2016.7-1"; sha256="12xi2xw4pr78n3cppfknpxmjp2263pb4kqj9v412yxwp82rgb6yk"; depends=[tframe timeSeries]; }; - tfruns = derive2 { name="tfruns"; version="0.9"; sha256="0xi0z42w64sjncf85pwc35bffymink6s70v41iv43f3qi0w533aj"; depends=[]; }; + tfruns = derive2 { name="tfruns"; version="0.9.1"; sha256="1j90phx4xz9myappssx6kj8jgpsjhzhl5f94gqy13mlf36fm97hz"; depends=[config jsonlite magrittr tibble yaml]; }; tgcd = derive2 { name="tgcd"; version="2.0"; sha256="1553f464jpmngdj8fmbjn9cpmrcp4ysgsfx4w7q4pm4csslsqvlr"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; tglm = derive2 { name="tglm"; version="1.0"; sha256="1gv33jq3bzd5wlrqjvcfb1ax258q9asawkdi64rbj18qp7fg2dbx"; depends=[BayesLogit coda mvtnorm truncnorm]; }; @@ -10692,19 +10902,20 @@ in with self; { threewords = derive2 { name="threewords"; version="0.1.0"; sha256="083y5i4qyl1wj017wy5ywl2yx9wvrpjl9g9k9clvnrbwzbycx2cg"; depends=[httr]; }; threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; }; thregI = derive2 { name="thregI"; version="1.0.3"; sha256="1nacwpzwzb6v6gxrdrarpnrgmsgnn6nsrg53b6866lcqsg09imvj"; depends=[Formula survival]; }; + threshr = derive2 { name="threshr"; version="1.0.0"; sha256="1zrhmqpz3k2gyddrzg96yyyc1jffj3aic2dmbidxxc97b9g5hi53"; depends=[revdbayes rust]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; tibble = derive2 { name="tibble"; version="1.3.4"; sha256="02vn6yqzcvmazy5jaqar3wwbrmh83a1bfgsqgk0hgz38i80zgvm7"; depends=[Rcpp rlang]; }; + tibbletime = derive2 { name="tibbletime"; version="0.0.1"; sha256="0c7iyzlldrxwkjvchsc6clv3ylv1krm3grl8wlmdb13iyjfp6p1r"; depends=[assertthat dplyr lubridate magrittr purrr rlang stringr tibble tidyr]; }; tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; - tidyRSS = derive2 { name="tidyRSS"; version="1.2.1"; sha256="0ccs7njylm9dns8vkda52plxp8is3c5ynb55wcjd50qk44sys867"; depends=[dplyr httr lubridate magrittr tibble xml2]; }; + tidyRSS = derive2 { name="tidyRSS"; version="1.2.2"; sha256="1vyn6fr25b0216716sp26rg3gdklqz60m6hffd01m52pvwvhk9qx"; depends=[dplyr httr jsonlite lubridate magrittr purrr testthat tibble xml2]; }; tidycensus = derive2 { name="tidycensus"; version="0.2"; sha256="0d80yy59avy9h2ksyv6iabiqkqa8bgr1i2s8n43w569fisjzlf9i"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; tidygenomics = derive2 { name="tidygenomics"; version="0.1.0"; sha256="0n6km2zhdmbgacn6rzamrn506d9y3sl6yp2q6fd9x7kzgz09aq4n"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp tidyr]; }; tidygraph = derive2 { name="tidygraph"; version="1.0.0"; sha256="1z0jmhwj3m1xk9zmds2riyqmq189716j5qi6ijgf3xni3n25c0m0"; depends=[dplyr igraph magrittr R6 Rcpp rlang tibble tidyr]; }; - tidyjson = derive2 { name="tidyjson"; version="0.2.2"; sha256="1fim73qbd6jqjlprxv9wzhg0hr20pihdmdbx49yharfs74hf9yv7"; depends=[assertthat dplyr jsonlite]; }; tidyquant = derive2 { name="tidyquant"; version="0.5.3"; sha256="1vvmx0l5vd434gjsqd19vlnzk0hxgh82b1dsf2zwshc9hni1b75l"; depends=[broom curl devtools dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr rvest scales stringr tibble tidyr tidyverse timeSeries timetk tseries TTR XLConnect xml2 xts zoo]; }; - tidyr = derive2 { name="tidyr"; version="0.7.0"; sha256="1lg0amx5hs37ajwjxz7ya50q4s28jcdj51kzl10s1x4l1akp7xls"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; }; - tidyselect = derive2 { name="tidyselect"; version="0.1.1"; sha256="0fhqj22g69lba8xavzagm64r0w488shdxha1c529vnfm5hv7fiic"; depends=[glue Rcpp rlang]; }; + tidyr = derive2 { name="tidyr"; version="0.7.1"; sha256="18fii18f967xaw6swn0w744sncx37rfq6gd8d9dccrpyf8647hmr"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; }; + tidyselect = derive2 { name="tidyselect"; version="0.2.0"; sha256="1h10qc5bxk5v0zhmip3gwnzy50fs2gbdvcg2163is0k9a8rifq9r"; depends=[glue purrr Rcpp rlang]; }; tidytext = derive2 { name="tidytext"; version="0.1.3"; sha256="10vdrvadllqrblc0w4ndvgvy9gq5l4nf93g31b1a2xkz2p30zc15"; depends=[broom dplyr hunspell janeaustenr Matrix purrr stringr tokenizers]; }; tidyverse = derive2 { name="tidyverse"; version="1.1.1"; sha256="1ahxs7xzik27xdbzc1ccrkq5knzrn8xf82x3dhh94xi5c8p3ysqx"; depends=[broom dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr purrr readr readxl rvest stringr tibble tidyr xml2]; }; tidyxl = derive2 { name="tidyxl"; version="0.2.3"; sha256="1rl51qrkzfw65px236x3hryfcfkrv6v1mxy5bqanlxcxyv94pnp2"; depends=[Rcpp]; }; @@ -10712,7 +10923,7 @@ in with self; { tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; tigerstats = derive2 { name="tigerstats"; version="0.3"; sha256="12wrghipgypkhwwkmaxb6n0qx9fgxk82dc6wlh56rblsvciv2hj0"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData]; }; - tigger = derive2 { name="tigger"; version="0.2.10"; sha256="17dym3d1c1a34m0iwbrbp1xa8k46vi27g897z4mzb5ywk6605kn0"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval tidyr]; }; + tigger = derive2 { name="tigger"; version="0.2.11"; sha256="1kbqlfr3lsiiv0l7dzahna706zb4mx0gfx91220n2ckfc81pyrv5"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.0"; sha256="0psyzk6d33qkql8v6hzkp8mfwb678r95vfycz2gh6fky7m5k3yyz"; depends=[]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.4"; sha256="0c733mb2fzskrfa4664w6psp80wdr5hc7f9rp516y59a8rr3xzr0"; depends=[DBI RSQLite]; }; tigris = derive2 { name="tigris"; version="0.5.3"; sha256="0ic4l91dd97gmbqm6jgwkx34gsna6asaq14prmjq8y8n4bw7dkvf"; depends=[dplyr httr magrittr maptools rappdirs rgdal rgeos sf sp stringr uuid]; }; @@ -10734,7 +10945,7 @@ in with self; { timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; }; timetk = derive2 { name="timetk"; version="0.1.0"; sha256="0z4zb00c4xbjn3ppz6ypcab2ahkr76mj6v68yfxkjb233cb18641"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; }; - timetools = derive2 { name="timetools"; version="1.12.0"; sha256="06yfgnz7nap2zhq1l62xbi17d83d21vjk62jb4mxrg8wprs4arnv"; depends=[]; }; + timetools = derive2 { name="timetools"; version="1.12.2"; sha256="17vw0piqzjr3vkpccksxk0razlvb9pcbwq737xkhabp363b8rqbx"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; timevis = derive2 { name="timevis"; version="0.4"; sha256="08caa5gilh1c0z41lm3ghf6cpnlsdjfm1v7ha73jxv1655kznmpx"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; timma = derive2 { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[QCA Rcpp RcppArmadillo reshape2]; }; @@ -10786,6 +10997,7 @@ in with self; { tourr = derive2 { name="tourr"; version="0.5.5"; sha256="12293kp36kz056zd3fnsaf2gy4g8mcs79ws0vgbs7b0hx09sy9vp"; depends=[]; }; tourrGui = derive2 { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[Cairo colorspace gWidgets RGtk2 tourr]; }; toxboot = derive2 { name="toxboot"; version="0.1.1"; sha256="0sw0mxhcq5k11swlhfpn6xk0nfsambh2yx1721zx75lya27wkmq1"; depends=[data_table tcpl]; }; + toxplot = derive2 { name="toxplot"; version="0.1.0"; sha256="0sl3ihagfxa7xl2l7xsrmvp6j1pxlrsqcljmwpwrn0sd5sdwyjm0"; depends=[dplyr ggplot2 ggthemes tcpl tidyr]; }; toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpe = derive2 { name="tpe"; version="1.0.1"; sha256="0zsa8vb4qmln3sb4lplv43lh50yys9vfd3rxfp6qxqqjxivd0xsh"; depends=[]; }; @@ -10797,7 +11009,7 @@ in with self; { trackeR = derive2 { name="trackeR"; version="0.0.5"; sha256="0c1wfc41a0n9ldz7mmcss3m2c7lz5wjmv5ifwn9h6ih7wng9d707"; depends=[colorspace fda ggmap ggplot2 gridExtra gtable jsonlite leaflet raster RSQLite scam XML zoo]; }; tractor_base = derive2 { name="tractor.base"; version="3.1.0"; sha256="0d3hkxqygyh02v63wny32zdxpsn6m6q8i1630zl1mhrbvq3kmqr5"; depends=[ore reportr]; }; traitr = derive2 { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest gWidgets proto]; }; - traits = derive2 { name="traits"; version="0.2.0"; sha256="0qsnlp96ilwmaimph0bvkjw4kaqd3wpfy6knd7k5s321b68hqaam"; depends=[data_table dplyr httr jsonlite readr rvest taxize xml2]; }; + traits = derive2 { name="traits"; version="0.3.0"; sha256="155y8j69214xxi1bfk07k30zlpm3q6fmz7ydhnkvw0kv4l0i5pc5"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajectories = derive2 { name="trajectories"; version="0.1-4"; sha256="0vwfbx5s8ywasxwv8cld4s6r96vlyknxipp49rsfpqn94nawhwnx"; depends=[lattice sp spacetime]; }; tranSurv = derive2 { name="tranSurv"; version="1.1-4"; sha256="1vsp12x4h0s1lba1kf7n0v71kgm1dz6cjfp8lffm4ps80nahs63l"; depends=[rootSolve SQUAREM survival]; }; @@ -10819,11 +11031,12 @@ in with self; { treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; }; treeman = derive2 { name="treeman"; version="1.1.1"; sha256="0j76crs31qniibsdj7dpbbr2jdbhvclfvcscd5dgklvpcspbarch"; depends=[ape bigmemory plyr RJSONIO stringr]; }; treemap = derive2 { name="treemap"; version="2.4-2"; sha256="15bdgkdwryb55v82b3hpcx4ykfg5z7zf10h0wwknf6kl1kn34v90"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; + treemapify = derive2 { name="treemapify"; version="2.3.2"; sha256="0cixn3v41fki4iyvwmxsljwacffyb27q87cgnnw7sqf0vnkgb2gy"; depends=[ggfittext ggplot2 plyr reshape2]; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; treeplyr = derive2 { name="treeplyr"; version="0.1.3"; sha256="00fkmmzivwy603grfbwdabsik1swkyba7sbwcjzxbgsmx3s472g6"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; treespace = derive2 { name="treespace"; version="1.0.0"; sha256="1dc98p5jf9qyr31xa7h7v2zrjmhd3jlzrh2cpmnmhbpfm1cviskj"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn Rcpp RLumShiny scatterD3 shiny shinyBS]; }; treethresh = derive2 { name="treethresh"; version="0.1-11"; sha256="1fksyn9mycr6dpw1yh5b3fa7fk7ndz7q39174daplm55jbrz1dr5"; depends=[EbayesThresh wavethresh]; }; - trelliscope = derive2 { name="trelliscope"; version="0.9.7"; sha256="1hczmi3hjlk1nqd4p2m2hs89a86jrg59rraxw5z5fm0pa92xnzqy"; depends=[base64enc curl data_table datadr digest DistributionUtils ggplot2 hexbin htmltools htmlwidgets jpeg jsonlite lattice png rsconnect shiny]; }; + trelliscope = derive2 { name="trelliscope"; version="0.9.8"; sha256="1581ss5c3f7mnv6s3p9f8kfwnks0l80kxwpxv9mq61w3lf9fksm2"; depends=[base64enc curl data_table datadr digest DistributionUtils ggplot2 hexbin htmltools htmlwidgets jpeg jsonlite lattice png rsconnect shiny]; }; trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; }; trend = derive2 { name="trend"; version="1.0.0"; sha256="1fbzylw90y2h8qmg6hivhrrvv154jgfi77qij9wrh58rl2yq6gsj"; depends=[extraDistr]; }; triangle = derive2 { name="triangle"; version="0.10"; sha256="02s7iblk3fdrjhz0sns76bqrfwi0y0l6vbjfsb5mzq6pn45n0nkv"; depends=[]; }; @@ -10859,11 +11072,14 @@ in with self; { tsbugs = derive2 { name="tsbugs"; version="1.2"; sha256="130v4x6cfy7ddvhijsnvipm4ycrispkj1j0z5f326yb4v5lrk91x"; depends=[]; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; tsdecomp = derive2 { name="tsdecomp"; version="0.2"; sha256="1wy37gjp49dr60s4zhwv19iv3mzr1fjz5yilqmqgy78j5d45ns15"; depends=[]; }; + tsdf = derive2 { name="tsdf"; version="1.1-2"; sha256="11yapq3ml9clj0sqwibraj3wd7pikh2qrhq4df4m45ib6fiaa3jc"; depends=[gsDesign]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; + tsensembler = derive2 { name="tsensembler"; version="0.0.2"; sha256="0yhm6vayh1yjrvki04f86xvxmrl9pcj92z0gzwyh0j1cqp48sh79"; depends=[Cubist earth gbm glmnet kernlab nnet pls ranger RcppRoll xts zoo]; }; tseries = derive2 { name="tseries"; version="0.10-42"; sha256="1i26ankmbc96w6abqhxhbvhd12m87f2jfb5xrbl01iqmhy2pjzw2"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13"; sha256="0f2hycxyvcaj3s1lmva1qy46xr6qi43k8fvnm4md5qj8jp2zkazg"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfa = derive2 { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; }; + tsgui = derive2 { name="tsgui"; version="0.0.3"; sha256="16cx68gq2f63wx7mhbv0aq6pr71wfbc035kjbjjsfrbagaq4ib13"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; tsiR = derive2 { name="tsiR"; version="0.3.0"; sha256="1brlwsbs4rac8z6cf1q3xm1apdi4ban5hj7p3qvz2yx810gbxp1d"; depends=[ggplot2 kernlab reshape2]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; tsna = derive2 { name="tsna"; version="0.2.0"; sha256="09q01jzj1rnv2f2jf7djnq5xrkp7lvykdbf4bfswsy0f95j0asx2"; depends=[network networkDynamic statnet_common]; }; @@ -10879,7 +11095,7 @@ in with self; { tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; ttutils = derive2 { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; - tuber = derive2 { name="tuber"; version="0.9.0"; sha256="0s90mkv14mx1np0aa8chh5fdzx8978i2qn7v6w2aaxqff8q9why6"; depends=[httr plyr]; }; + tuber = derive2 { name="tuber"; version="0.9.1"; sha256="011nlnyj49zb9gyh1h745s748zd486g0nrqgjsmyc6jhv5anmhi1"; depends=[httr plyr]; }; tubern = derive2 { name="tubern"; version="0.1.0"; sha256="0wpn4aig6r1kpncrgrqra4kr0f07rdq7z4p2k0h28f7kww6l52vv"; depends=[httr jsonlite]; }; tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.0"; sha256="0pxsnvzh5gy5dsdsqsmq8hkr597dnnv60b5dw7bqw493lavk2ccm"; depends=[]; }; tufte = derive2 { name="tufte"; version="0.2"; sha256="0yh5xdxapqpf5hgdn8c2jkk63817l2w6bxavw8457r89rnj1022p"; depends=[htmltools knitr rmarkdown]; }; @@ -10907,12 +11123,14 @@ in with self; { twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; txtplot = derive2 { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"; depends=[]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; + uGMAR = derive2 { name="uGMAR"; version="1.0.1"; sha256="1hjqx6m0617240b438zzk4y1jz0hpcwaj279555mldr6af445h1l"; depends=[Brobdingnag]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; uaparserjs = derive2 { name="uaparserjs"; version="0.1.0"; sha256="1zhz39jrvi64sj0wvwkm4y8gakfp6kz1knw4wn08kk4fa9ymyjvq"; depends=[dplyr purrr V8]; }; ubeR = derive2 { name="ubeR"; version="0.1.4"; sha256="1ilclna04hd1ykcp2b3gcj0v4qznwx0d24yavxnf2yh5d91wr6z2"; depends=[dplyr ggmap ggplot2 ggthemes googleway httpuv httr jsonlite]; }; ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; }; ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; udapi = derive2 { name="udapi"; version="0.1.0"; sha256="0hwnrx9qkazja288m6irmwwybiys9npk6sk60acjdczsfrn1hvl0"; depends=[curl httr]; }; + udpipe = derive2 { name="udpipe"; version="0.1.1"; sha256="1q1hl5swn0psds7wdfrng21xar4n1fr1s0qrk1rhv9g3m7a7jlpk"; depends=[data_table Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.1.1"; sha256="0d1agg94z0qy6k4pbv01p1xb0zh42gkjl5i9kbqblplnk2swkzyi"; depends=[rmarkdown]; }; ukbabynames = derive2 { name="ukbabynames"; version="0.1.1"; sha256="0vrwcf3hixd40ag6kb289anq2ys2k6vdhhsrjbizvndkyn8sr0r0"; depends=[]; }; @@ -10929,15 +11147,17 @@ in with self; { uniCox = derive2 { name="uniCox"; version="1.0"; sha256="1glgk6k8gwxk3haqaswd2gmr7a2hgwjkwk2i1qc5ya7gg8svyavv"; depends=[survival]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; }; + unifDAG = derive2 { name="unifDAG"; version="1.0.1"; sha256="1zf2pclddswrssil7ikq75449ks3070jxkzy2lmggq9gyipdypps"; depends=[gmp graph]; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; uniqueAtomMat = derive2 { name="uniqueAtomMat"; version="0.1-3-2"; sha256="1msk9wzxhqdq6737b5xay1nqyvppb2yjcpnff2l7c7jf4xrlw0pp"; depends=[]; }; unitedR = derive2 { name="unitedR"; version="0.2"; sha256="0glcyji0cypb2687cvyra0zzlzbq0md7qb60abgi0199hf51q3dj"; depends=[plyr]; }; - unitizer = derive2 { name="unitizer"; version="1.4.3"; sha256="0wcr58w1pf91hb3g8sgq7l6cw3idxn550i2aih8ixp1s3r1r757d"; depends=[crayon diffobj]; }; - units = derive2 { name="units"; version="0.4-5"; sha256="0sal0h1px9nbaqmd0d3s1x70lqs34qbj43b3pdrp7hvb4v48q82w"; depends=[udunits2]; }; + unitizer = derive2 { name="unitizer"; version="1.4.4"; sha256="0lx8x8y9hm5ilrw8i04krg9jlrs6j29cpmn723xjasgb3byj2sx6"; depends=[crayon diffobj]; }; + units = derive2 { name="units"; version="0.4-6"; sha256="1vx11yrmpk61gkhafbhhl97c8r4h9zvz9pd257daa8f2gsdkqf6v"; depends=[udunits2]; }; unittest = derive2 { name="unittest"; version="1.2-0"; sha256="1g3f36kikxrzsiyhwpl73q2si5k28drcwvvrqzsqmfyhbjb14555"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.1-3"; sha256="0p6x38szag3ngk48rz3vlsph5y6yd2vckpkqfd9h7yz2ziyyy5m6"; depends=[Hmisc robustbase]; }; unix = derive2 { name="unix"; version="1.3"; sha256="1l5w22j0h3qzya13wx7y8lx2baw496vcmn39l2y8r1v38as9dybc"; depends=[]; }; + unjoin = derive2 { name="unjoin"; version="0.0.3"; sha256="08vjgl4dnh9kycrvdq5ngf57fy61n0nc582bi4znv06pq696rkwp"; depends=[dplyr rlang tibble]; }; unmarked = derive2 { name="unmarked"; version="0.12-2"; sha256="1ql8l7kc8py7zand164w3yszqbmwyxvrkjvr10l4hx2mkcnvxzx0"; depends=[lattice plyr raster Rcpp RcppArmadillo reshape]; }; unpivotr = derive2 { name="unpivotr"; version="0.2.1"; sha256="0gijbx2ziyfh9wl0a8dxnmm31961sdd9hi0i09frkqhxmcch45fx"; depends=[data_table dplyr dtplyr lazyeval magrittr purrr tibble tidyr xml2]; }; unrepx = derive2 { name="unrepx"; version="1.0"; sha256="1dzvwpza60y9p7kz1f0bm20wid5jyxx9pma4w41az9shq5kkr0aj"; depends=[]; }; @@ -10948,7 +11168,7 @@ in with self; { upclass = derive2 { name="upclass"; version="2.0"; sha256="0jkxn6jgglw6pzzbcvi1pnq4hwfach3xbi13zwml4i83s3n5b0vg"; depends=[mclust]; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; upmfit = derive2 { name="upmfit"; version="0.1.0"; sha256="0f0rk606v17abgw3mwlwihl6fsxprp44h2xbhv1675i18i36vbgx"; depends=[mcmcplots R2jags]; }; - uptasticsearch = derive2 { name="uptasticsearch"; version="0.0.2"; sha256="0ippi520hrwmrc7p7f5jrxfqlc50gqc901zxzmrwylpjgc56vrzw"; depends=[data_table futile_logger httr jsonlite purrr stringr uuid]; }; + uptasticsearch = derive2 { name="uptasticsearch"; version="0.1.0"; sha256="0kr9lmfp5fa3rcmk0s56pgr4h2pabic17m9yv2sljg7cvx50iss6"; depends=[data_table futile_logger httr jsonlite purrr stringr uuid]; }; uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; uqr = derive2 { name="uqr"; version="1.0.0"; sha256="0f7isjfb5almp1zypxzw3lfkygkcixmg0xdsw0zznf61r6qhbqyr"; depends=[gtools Hmisc]; }; urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; }; @@ -10965,6 +11185,7 @@ in with self; { ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utf8latex = derive2 { name="utf8latex"; version="1.0.4"; sha256="12isrl056h7y7nr7wk52dnvf3frcp66qqy7si869ark2aj81f959"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.1"; sha256="1q94ax5vp0js4rskklkq91mvz07m4ryn5z1333cxkjmgilv9975j"; depends=[]; }; + utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.1"; sha256="0zlqfl8gvi9ywv5g6wf4c2fck2jcli1pb2p3cnrs74s195zp0jy2"; depends=[data_table stringr]; }; utiml = derive2 { name="utiml"; version="0.1.3"; sha256="08r2qfvxlz50jzvhl0k9pvzf9xs8jm838bv9ncg59ir1b3ijbkk5"; depends=[mldr]; }; uuid = derive2 { name="uuid"; version="0.1-2"; sha256="1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"; depends=[]; }; uwIntroStats = derive2 { name="uwIntroStats"; version="0.0.3"; sha256="1m8n6bans7kkwriqky92vvv2sbdacyq2pvbv2m5p37q7qk5215c2"; depends=[Exact geepack plyr sandwich survival]; }; @@ -10984,9 +11205,9 @@ in with self; { varSel = derive2 { name="varSel"; version="0.1"; sha256="0ddj3swfxzchs75kfi6h25h3c33hpapnd5kcwcijnqhlh902b1r0"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; }; varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; - varbvs = derive2 { name="varbvs"; version="2.0-8"; sha256="1bjw90lz1499ykx1q6yj7qd9bks1794s4yf4lz4c7sm0vbdx31x6"; depends=[lattice latticeExtra Rcpp]; }; + varbvs = derive2 { name="varbvs"; version="2.4-0"; sha256="0f6c9acrir8c8m8mg928azlp31yh49faz5s2g7cbgf5f1pxi07nl"; depends=[lattice latticeExtra Matrix Rcpp]; }; vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; }; - vardpoor = derive2 { name="vardpoor"; version="0.9.8"; sha256="16fjikmjnb08gnwjahz9vjygk1apdgfijzwrv1rf8ny25310z0w2"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; + vardpoor = derive2 { name="vardpoor"; version="0.9.10"; sha256="0q5pfdml4hq8sznm10h2fdjcyzyw9y3gfi0ijq2h3rdsgm8ap174"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; varhandle = derive2 { name="varhandle"; version="2.0.2"; sha256="1lbhwkkp9dyfhby6s4q3b6wy13wfqdjw3q21kq6k08rz7lsi0wny"; depends=[]; }; variables = derive2 { name="variables"; version="0.0-30"; sha256="182c8c7cwkmrpk01bki94y6f3wgf2zdjvvcfa4paa6bfq8w9ckh3"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; @@ -11002,11 +11223,12 @@ in with self; { vdiffr = derive2 { name="vdiffr"; version="0.2.0"; sha256="1gm5saqi3z6jrngrl1bnqj79c646pmqps42v65qv4w31pwcwaaqc"; depends=[devtools fontquiver gdtools glue htmlwidgets purrr R6 Rcpp rlang shiny svglite testthat xml2]; }; vdmR = derive2 { name="vdmR"; version="0.2.4"; sha256="05y2zaj37ydqrb3lw16mr8brwsdcdyl5bq1kb84shfmmi0qarsqa"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr rgdal rgeos rjson Rook sp]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; + veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.1"; sha256="0k27g3frc9y9z2qlm19kfpls6wl0422dilhdlk6096f1fp3mc6ij"; depends=[]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.4-3"; sha256="15zcxfix2d854897k1lr0sfmj2n00339nlsppcr3zrb238lb2mi5"; depends=[cluster lattice MASS mgcv permute]; }; + vegan = derive2 { name="vegan"; version="2.4-4"; sha256="1n57dzv2aid6iqd9fkqik401sidqanhzsawyak94qbiyh6dbd1x9"; depends=[cluster lattice MASS mgcv permute]; }; vegan3d = derive2 { name="vegan3d"; version="1.1-0"; sha256="1rhqk9sj71mrb53r2pgdy87bdq3drx5j4a9ilwvw23dlvjry889l"; depends=[cluster rgl scatterplot3d vegan]; }; - vegclust = derive2 { name="vegclust"; version="1.6.5"; sha256="0y1lh4d2i3nxgc30wp6f14v2p14bx399y4cr5r7gv2gi76c5bhj4"; depends=[sp vegan]; }; + vegclust = derive2 { name="vegclust"; version="1.7.1"; sha256="1k1dcw424s19f8ngsksvdmsayahl1hkxd9v2irf8ljpp688l8idi"; depends=[Rcpp sp vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.1"; sha256="0w4dk7qcl89w04qgnlna5lk5hxnyrvwmgjjxmnvb6r5dspq7qyad"; depends=[foreign httr jsonlite XML]; }; vegetarian = derive2 { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; vegtable = derive2 { name="vegtable"; version="0.1.0"; sha256="12nfw0263vw9x74siqdfmlyf7dxi0kyjrla5wiwn9gfq9xbz1hrj"; depends=[foreign plotKML qdapRegex sp taxlist vegdata]; }; @@ -11023,8 +11245,8 @@ in with self; { vertexenum = derive2 { name="vertexenum"; version="1.0.1"; sha256="060sfa22m35d1hqxqngxhy7bwjihf6b4sqa1kg5r0cqvdw9zg51d"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; - vetr = derive2 { name="vetr"; version="0.1.0"; sha256="0bm390blcf7idav9rrnnhj9z76w6k53pvxmw99jq1amj7wlg2cf0"; depends=[]; }; - vfcp = derive2 { name="vfcp"; version="1.1.0"; sha256="0y4gql3vps3m029k4nj6bvsni8fn5qibbnxcz8sz5dxcp13c1in0"; depends=[]; }; + vetr = derive2 { name="vetr"; version="0.2.1"; sha256="041sjbyi47g9b3cla8rnrbff3asz9frgajgc6gmajw95aqr9z0l8"; depends=[]; }; + vfcp = derive2 { name="vfcp"; version="1.3.0"; sha256="072y458dy6s1qsylypxp0lccr3faa0vkz2ssvafxh21syg3gidiv"; depends=[copula cubature extraDistr polyCub]; }; vhica = derive2 { name="vhica"; version="0.2.4"; sha256="0km49lrzn9rm3wxadwxc290dvx3bsblbmna7f9lnkq6g1z5jdqwg"; depends=[]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; @@ -11054,12 +11276,13 @@ in with self; { vowels = derive2 { name="vowels"; version="1.2-1"; sha256="0177xysb5y8jzpxn9wdygq2f74gys67g29cd12zw77vlq3c3kkbr"; depends=[]; }; vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; }; voxel = derive2 { name="voxel"; version="1.3.2"; sha256="0sixcan3v5nczmrrxn56rw5dqjq8xx7z3cp18j23jq26mvq4nm34"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti]; }; + vpc = derive2 { name="vpc"; version="1.0.0"; sha256="1d8k7d016qzd6njqraacdzb91j6drm5985aj6bxhcyz499pg3gbi"; depends=[classInt dplyr ggplot2 MASS readr reshape2 survival]; }; vqtl = derive2 { name="vqtl"; version="1.2.0"; sha256="1l5b1bchl08z3bx5y6dbvbw4hnxzb6i5i6h7vv5kd8mbffkdspyb"; depends=[dglm doParallel dplyr evd foreach ggplot2 gtools iterators knitr lazyeval qtl stringr testthat tidyr]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; - vtreat = derive2 { name="vtreat"; version="0.5.32"; sha256="03hhag3syg9yp6xxf20wxrqbaa1pzjjzdc9bc030gfmmlsgwza3s"; depends=[]; }; + vtreat = derive2 { name="vtreat"; version="0.6.0"; sha256="1xq4v81w6y6z1sah57bsy29642rzg32z0829rhc7slx1w46zqmya"; depends=[]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; @@ -11096,17 +11319,18 @@ in with self; { wbs = derive2 { name="wbs"; version="1.3"; sha256="1fdf3dj23n63nfnzafq88sxqvi15cbrzsvc8wrljw1raq5z012yv"; depends=[]; }; wbstats = derive2 { name="wbstats"; version="0.1.1"; sha256="18yws6zgvs773mhml5hn6aqyc2xyas10cg5jvnk4l50wir2qknxq"; depends=[httr jsonlite]; }; wbsts = derive2 { name="wbsts"; version="0.3"; sha256="1h749j20q30lrn3b4ffcap3mvxjpih1gchvv8yag0gbzcs0wc1fm"; depends=[mvtnorm wmtsa]; }; - wccsom = derive2 { name="wccsom"; version="1.2.11"; sha256="0f2p7sllp3916lcf02k179pnl17fdmk8s7bjnkwb93kh513rs1yj"; depends=[class kohonen MASS]; }; wdman = derive2 { name="wdman"; version="0.2.2"; sha256="1a6zav82w0krk0ncm5b79ahy2hc0xakg9i1m2143ih5p6zvcm5m0"; depends=[assertthat binman semver subprocess yaml]; }; weatherData = derive2 { name="weatherData"; version="0.5.0"; sha256="1l207m506wj0jk3skpwhwq66ci4v2jjaz7sbw30ywgpicw9mizs9"; depends=[curl plyr]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; }; + webTRISr = derive2 { name="webTRISr"; version="0.1.0"; sha256="19xal5zg9mg25vzvkz55zm6gkd8b0y3sw3zbbrxn73a1jg8x5v0l"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr stringr]; }; webchem = derive2 { name="webchem"; version="0.2"; sha256="0mxikd2ls0jcal9z0byan1l78965qq8jdyym9ydb4c56g1p2iyl8"; depends=[httr jsonlite RCurl rvest stringr xml2]; }; webglobe = derive2 { name="webglobe"; version="1.0.2"; sha256="1277d6fkgrgixlhikfwf0r6z8g5b7mah905xi219qsfycxmifgn9"; depends=[geojsonio httpuv jsonlite]; }; webmockr = derive2 { name="webmockr"; version="0.1.0"; sha256="0jfjn0y62rrwx88vhx4xfgsf36f147b3yzwvpyshxwvxn9khza5i"; depends=[curl jsonlite lazyeval magrittr R6 urltools]; }; webp = derive2 { name="webp"; version="0.4"; sha256="0jsyjynrsrqpbg93rn48xrjclkvwmz2c2lhcfli5djny122ymh6r"; depends=[]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; - webshot = derive2 { name="webshot"; version="0.4.1"; sha256="1ydq3i4rs3dsv6rzzf020ffb7gyjszavw0aqmw34kqcj9yaj4ffs"; depends=[jsonlite magrittr]; }; + websearchr = derive2 { name="websearchr"; version="0.0.1"; sha256="1a174mf5j7z7q57fc1411h5hg54jg18kb00fp911w01mhd2zwmyx"; depends=[]; }; + webshot = derive2 { name="webshot"; version="0.4.2"; sha256="1ljp2c7yj21smr8ihzvmcs29z5gjr9wwfqfp33zrqc8xd8599iq9"; depends=[jsonlite magrittr]; }; webuse = derive2 { name="webuse"; version="0.1.2"; sha256="0ks3pb9ir778j9x4l0s4ly2xa1jc9syddqm65wkck52q3lrarg3l"; depends=[haven]; }; webutils = derive2 { name="webutils"; version="0.6"; sha256="1basl7q2m8y9nw5ksi1kdz6an9pybvsmdd4snrm7a37041xymnps"; depends=[curl jsonlite]; }; webvis = derive2 { name="webvis"; version="0.0.2"; sha256="1cdn9jrpg2sbx4dsj0xf7m0daqr7fqiw3xy1lg0i0qn9cpvi348f"; depends=[]; }; @@ -11136,27 +11360,27 @@ in with self; { widyr = derive2 { name="widyr"; version="0.1.0"; sha256="0vy34phli9jynjdwss8cpadaaizh9bhc1h0amsblc0il6xanviqm"; depends=[broom dplyr Matrix purrr reshape2 tidyr tidytext]; }; wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; wikilake = derive2 { name="wikilake"; version="0.3"; sha256="1y4vinm8gxyj6x36nb4xzhx1yf96x1nwlzzhvj4g36rbcix7dn6q"; depends=[maps rvest selectr sp stringi stringr WikipediR xml2]; }; - wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.10"; sha256="10av87jlfn2lfx37bnhlpdnhg657md9jx3c3frc9a4mm4lhl7rbv"; depends=[hellno httr jsonlite rvest stringr xml2]; }; + wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.14"; sha256="00i38py9n4l0iqkn3257a3jbiwh3hrmx1p9x6rfh9sgfcch8yyj5"; depends=[hellno httr jsonlite RColorBrewer rvest stringr xml2]; }; wikitaxa = derive2 { name="wikitaxa"; version="0.1.4"; sha256="0d6ycn8j40lcc4plv7z34h14icaljywbl7b91gd803wxln4nhr6f"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; - wildcard = derive2 { name="wildcard"; version="1.0.3"; sha256="1k4780g1r67p2n6432kx6xqqacl6rrnvdihvgrp5x5cayz7m7z6z"; depends=[magrittr stringi]; }; + wildcard = derive2 { name="wildcard"; version="1.1.0"; sha256="0qkzab84z95g5f4fv3v4wisccgd7k9m3210pz4nvm1x8rfaqfjf1"; depends=[magrittr stringi]; }; wildlifeDI = derive2 { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[adehabitatLT rgeos sp]; }; wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; windex = derive2 { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; }; windfarmGA = derive2 { name="windfarmGA"; version="1.1.1"; sha256="1fns58q8bzsa6z8dghqs41xiv331pl75d4awrfgwslbg3lrd2x49"; depends=[calibrate data_table dplyr geoR ggplot2 googleVis gstat gtools leaflet maptools RandomFields raster RColorBrewer rgdal rgeos rgl RgoogleMaps sp spatstat]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; wiod = derive2 { name="wiod"; version="0.3.0"; sha256="1f151xmc6bm5d28w5123nm0hv7j1v8hay4jk5fk8pwn6yljl1pah"; depends=[decompr gvc]; }; - wiqid = derive2 { name="wiqid"; version="0.1.1"; sha256="0nibk10hmx4w17cn7x6m6nhybhv2s6vrrgqzn8s4jpffsbdc4cpv"; depends=[coda HDInterval MASS truncnorm]; }; + wiqid = derive2 { name="wiqid"; version="0.1.2"; sha256="0y974yjj5ckjb3kwwgsll8kcxa6kb8kzzkmy1by6f7qz5smkvx4s"; depends=[coda HDInterval MASS truncnorm]; }; withr = derive2 { name="withr"; version="2.0.0"; sha256="0ncq9ygx33rx7aazn53p0a0vbr5xv0r6wbkzcwbhbwyd8k55bgin"; depends=[]; }; wkb = derive2 { name="wkb"; version="0.3-0"; sha256="0s7libkg27jdmcw5qmk5j0cmz3nqq7ny4q8gy4vhbgsgj4gbbdn9"; depends=[sp]; }; - wktmo = derive2 { name="wktmo"; version="1.0.3"; sha256="037hjc7kn171iji8yv2xl6wngxp2dsjw1zrsgpnqnmr9m530a5qf"; depends=[]; }; + wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; wle = derive2 { name="wle"; version="0.9-91"; sha256="18gqwrrw618f1xx93n0lk95gpi3lxvfkr6fmlb82v2wiibb7k7ak"; depends=[circular]; }; wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; wmtsa = derive2 { name="wmtsa"; version="2.0-2"; sha256="14znrylyazsj3d8nxgh3nvr94ifckan6gwy12b43zsyskzqp9zbg"; depends=[ifultools MASS splus2R]; }; wnominate = derive2 { name="wnominate"; version="1.2"; sha256="0kkdlhliihv45hc0fd25kairxd9r71hcx04ri9l0iy8cyhjs2n12"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.4"; sha256="0fjflnhyya93xns2mcklq8vw5zwwivw1ahz4smdmlcpxf35f9cz9"; depends=[]; }; - womblR = derive2 { name="womblR"; version="1.0.1"; sha256="0s1xaqg0xjdv288sd2zd5q6y6fwq9b5h6zpq88rg0b6gkh78sdhy"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - wooldridge = derive2 { name="wooldridge"; version="1.0.1"; sha256="05r48x70h8pkasnzkw74p8n5iaj422kf21yx8qfv79ksdwryaxzc"; depends=[]; }; + womblR = derive2 { name="womblR"; version="1.0.2"; sha256="0cnggwi47pmyjqz78vcvdzv3kpss6v4h404w2d7dii0zfqjr7bpk"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; + wooldridge = derive2 { name="wooldridge"; version="1.2.0"; sha256="1ib7qqmzybk7a171ny0zszh1lw2zgqyz35rb7g6y4ign2ng9ml9k"; depends=[]; }; word_alignment = derive2 { name="word.alignment"; version="1.0.6"; sha256="02hhl8357ykbf04gr8gjb9vkhimmb3fbi5jxrwy8dr0qysnz1kzg"; depends=[data_table openxlsx quanteda]; }; wordbankr = derive2 { name="wordbankr"; version="0.2.0"; sha256="041d5v3gm7bihx85k7kxwlqgg6vs24wzs2h59zf3l3cs39mhrhs5"; depends=[assertthat dplyr magrittr RMySQL stringr tidyr]; }; wordcloud = derive2 { name="wordcloud"; version="2.5"; sha256="1ajqdkm8h1wid3d41zd8v7xzf2swid998w31zrghd45a5lcp7qcm"; depends=[RColorBrewer Rcpp slam]; }; @@ -11166,7 +11390,7 @@ in with self; { wordspace = derive2 { name="wordspace"; version="0.2-0"; sha256="0rrnbimf68ax1qxsyn7g0kd76abijzxg5i11h93l0fnzi2g2a9xn"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; worldmet = derive2 { name="worldmet"; version="0.7.5"; sha256="08mj3m0r9rnljlsk3x25cp4da3bdv9qc1jgy1wrd1zg5908j6dis"; depends=[dplyr leaflet openair plyr RCurl readr zoo]; }; worms = derive2 { name="worms"; version="0.2.1"; sha256="0qxij56wvhlz9pgc1wp5nr3yi2r0h0r7xvlhhvsflch60gprpi1s"; depends=[httr plyr]; }; - worrms = derive2 { name="worrms"; version="0.1.0"; sha256="0wxdn960gqqbilg2xs9jjks8z1j6rslb8qwj1s9678hw3h8ymfgx"; depends=[crul jsonlite tibble]; }; + worrms = derive2 { name="worrms"; version="0.2.0"; sha256="1mqv2j9235pqdwqnw11b0zdv763wf9wqjqpf3p6fxpmki24j7xk6"; depends=[crul data_table jsonlite tibble]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; @@ -11176,16 +11400,17 @@ in with self; { wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrangle = derive2 { name="wrangle"; version="0.4"; sha256="0d1xdcvgcv8bn20s90sn1dmzhcdz39yr1m2bkcjbvavm132p96bl"; depends=[dplyr lazyeval magrittr tidyr]; }; - wrapr = derive2 { name="wrapr"; version="0.4.0"; sha256="1vzqq5na85k7ds9f68jayysahsb01hb57p8qx3pwdljqiba2pj6i"; depends=[]; }; + wrapr = derive2 { name="wrapr"; version="0.4.2"; sha256="0w4gbajgw3qnpb3r7090p5fv825adc1a0y0pijxq0vhk9x1g6ac4"; depends=[]; }; wrassp = derive2 { name="wrassp"; version="0.1.4"; sha256="0w1hzxwk00lk1hkdxxz6vqa6xzw5sf60y54xzfr510yd02x3r1gn"; depends=[]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; + writexl = derive2 { name="writexl"; version="0.2"; sha256="0hclrbn21sc0ifd2c5xfww84jf47412wzs86a73swxxjzcbrkg5k"; depends=[]; }; wrspathrow = derive2 { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; wrspathrowData = derive2 { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.0-1"; sha256="1czw3g2j6as024wwvxiizvvxjmsxmxhz86jbw2lh95nh61znb7l8"; depends=[logging Rcpp]; }; - wrswoR_benchmark = derive2 { name="wrswoR.benchmark"; version="0.1-1"; sha256="1a2ymyf1yww43i79hc912jpyqvbx44qn5bfnjwf4hq3mp707731j"; depends=[curl lazyeval]; }; - wru = derive2 { name="wru"; version="0.1-6"; sha256="1lpfpw4c9nn74n7z5wc42had9k5zrjcd2xjycfknxd8wglwzmd41"; depends=[devtools]; }; + wrswoR_benchmark = derive2 { name="wrswoR.benchmark"; version="0.2"; sha256="0vzs2lqq48kzk63xz2k9b7qcy0ph5yyvih6z98jfz36kpdfhdps9"; depends=[curl lazyeval]; }; + wru = derive2 { name="wru"; version="0.1-7"; sha256="1fvbl5i07f6kdwjhirjla4kc1rrmrm8blvn8aa79s87ljagg0ql9"; depends=[devtools]; }; wskm = derive2 { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; }; - wsrf = derive2 { name="wsrf"; version="1.7.13"; sha256="07dmimn58byr5dyszckazxjs2gjjk6g3si9wa5f10gbgzpc0713p"; depends=[Rcpp]; }; + wsrf = derive2 { name="wsrf"; version="1.7.17"; sha256="0gmlvfcy2iqa5sqhwps3hx0hl9fir8nf5xq62f25sn8i3llw752z"; depends=[Rcpp]; }; wtest = derive2 { name="wtest"; version="1.0"; sha256="0rn2wp4xqd1b95asc1ppscfm21p3r85za778f88kgqax2lx7kq96"; depends=[]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; }; @@ -11199,7 +11424,7 @@ in with self; { xbreed = derive2 { name="xbreed"; version="1.0.1"; sha256="0grrfra9j0k3mqikmrif5qawh4260ayr40irskzpp9ywsixim63h"; depends=[BGLR]; }; xergm = derive2 { name="xergm"; version="1.8.2"; sha256="0rg8b0r27nzjnf0zkwfbkw96439h0b40k1l5lqi5igyr0bm7w0cc"; depends=[btergm GERGM rem tnam xergm_common]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.7"; sha256="0nfls8a1knmnjjrrw0q93qsfrrb9p3yqsm5dxp13z0780vrzxvcj"; depends=[ergm network]; }; - xesreadR = derive2 { name="xesreadR"; version="0.1.0"; sha256="1np1x92vj3s70y9kqfxicd58ip6a611ykl6by5b5lhh0nrhcb783"; depends=[bupaR data_table dplyr tidyr XML xml2]; }; + xesreadR = derive2 { name="xesreadR"; version="0.2.1"; sha256="0q932zkrsg20nchbjf0yynq6c3j6jgslag5n77jc3fdzadk6yf6r"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; xgboost = derive2 { name="xgboost"; version="0.6-4"; sha256="1vfiz44prcjx2y442zc4x1b50k57qwd7sqbz6lq0kiqhp78ivicz"; depends=[data_table magrittr Matrix stringi]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; @@ -11215,14 +11440,15 @@ in with self; { xoi = derive2 { name="xoi"; version="0.66-9"; sha256="1kd9s9afq5shsaqhrxai9yz60a9imyy5np76fjpkjgyz56kbk6nr"; depends=[qtl]; }; xpose4 = derive2 { name="xpose4"; version="4.6.0"; sha256="1pyzpb6ddvpm3nx49brkam6afzhvf7jg8xnijg9jwd2qfijp8lav"; depends=[dplyr gam Hmisc lattice lazyeval readr survival]; }; xseq = derive2 { name="xseq"; version="0.2.1"; sha256="0bsakbfvkfv39q2ch2g21b17g84470sq4v73355cljlshsi6404i"; depends=[e1071 gptk impute preprocessCore RColorBrewer sfsmisc]; }; - xslt = derive2 { name="xslt"; version="1.1"; sha256="1mg0kjkc8hwj35ys6ih3ijl6sv1c6hlsmm03i1jm3ifqy27sad7b"; depends=[Rcpp xml2]; }; + xslt = derive2 { name="xslt"; version="1.2"; sha256="1b342hncyn1dba7hz951ckp4qd8j28kyj98b5zcxlcc58acis1nc"; depends=[Rcpp xml2]; }; xsp = derive2 { name="xsp"; version="0.1.2"; sha256="1jbmxa234v52qji8sz4bkg24c2n65b0zh9py1wyyfzw9n1wx5w0r"; depends=[ggplot2 reshape2]; }; xtable = derive2 { name="xtable"; version="1.8-2"; sha256="0398qkpvlw3dv0myz4mjcyqwpwc2m31l127r8vdzwc71wb6s28qn"; depends=[]; }; xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; + xtensor = derive2 { name="xtensor"; version="0.1.1-0"; sha256="06kzk8nrcgxkmm614wlafbrq3m7zm11wf33p3669f52bmkzwam38"; depends=[Rcpp]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xtractomatic = derive2 { name="xtractomatic"; version="3.3.2"; sha256="10a1apsjqg0cpr267g5336cl6qr3ax03jcl234l9a8b2nh8sbwi5"; depends=[httr ncdf4 sp]; }; xts = derive2 { name="xts"; version="0.10-0"; sha256="1w7lxy3hbf005fvpzbwiznj8jbxi07s4189vbgxisd35l9a4v6q4"; depends=[zoo]; }; - xxIRT = derive2 { name="xxIRT"; version="2.0.1"; sha256="1a31jyzc37bq3068vq18rdj0fn66jihk7d1qmqk8lq76gg72dwk6"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; + xxIRT = derive2 { name="xxIRT"; version="2.0.3"; sha256="10n9rrhp0v71gmn0s2l2qi6sfplwj7anydw6rxqk409wg5is3x93"; depends=[dplyr ggplot2 lpSolveAPI magrittr reshape2]; }; xyloplot = derive2 { name="xyloplot"; version="1.5"; sha256="0h90070m3xgcfky5q6vx6l2lfz0ihwbp2xg25mgmbijz4kg3n9d3"; depends=[]; }; xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; }; yCrypticRNAs = derive2 { name="yCrypticRNAs"; version="0.99.2"; sha256="130zp8na3d50b49bcsqzsmjy2sif865h6vfpc5zmp1fhvkyykkfd"; depends=[biomaRt data_table IRanges mclust MESS Rcpp Rsamtools]; }; @@ -11239,12 +11465,12 @@ in with self; { ykmeans = derive2 { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; }; yorkr = derive2 { name="yorkr"; version="0.0.7"; sha256="035pmvignq4lip3y5670kxj1n70ff04yy2jwi4837pimr9d0qjhv"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; yuima = derive2 { name="yuima"; version="1.6.8"; sha256="1x10q2l8xd3h86m333mi6hkb7fpf4q5fbs7gwmlynylkz216b65j"; depends=[cubature expm mvtnorm Rcpp RcppArmadillo zoo]; }; - yuimaGUI = derive2 { name="yuimaGUI"; version="1.1.0"; sha256="1q2v9hpj9j74f7ram92npglrqwyysnvv1bvk64qb7s9lpyv852zk"; depends=[DT ggplot2 quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; + yuimaGUI = derive2 { name="yuimaGUI"; version="1.2.0"; sha256="166hsq1nc0jzkqbz08y3dl0qdi58swascbkm1lc7zhsh6g93azjs"; depends=[DT ggplot2 plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; zCompositions = derive2 { name="zCompositions"; version="1.1.1"; sha256="1j6v7mfxhn67mr3q6cvcjj9pqc8a02w114z8q74h3l6jw8ahjg6m"; depends=[MASS NADA truncnorm]; }; zFactor = derive2 { name="zFactor"; version="0.1.6"; sha256="0mgqrqdqgm49yf7hmmnak21srxdvlbp57apjgr72w7iy0pwrlf58"; depends=[data_table dplyr ggplot2 rootSolve tibble tidyr]; }; zTree = derive2 { name="zTree"; version="1.0.4"; sha256="058vjvxn1lw07nxw8rs1b8vnw6ccxh3swrmvjicvr35xmakj8qa0"; depends=[plyr]; }; - zeallot = derive2 { name="zeallot"; version="0.0.4"; sha256="0chwwlnqsp200n65b93hspfzihv73pmlw31xxf7a5nqx64917axq"; depends=[]; }; + zeallot = derive2 { name="zeallot"; version="0.0.5"; sha256="0mv4ajprsyzscibc5c67va4pa8zrcm1ncddkkmpd0aqgby6kn2g8"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.1"; sha256="1d1s455vckd7148dycsqcfsdql0l4pzanipqn5k60kla03bic5i5"; depends=[doParallel foreach ggplot2 iterators plyr reshape2]; }; zeligverse = derive2 { name="zeligverse"; version="0.1.1"; sha256="1hf3hbgzdlhhyy2gvg984dwp8d0qm0ziyn8i9h5x00gwf74vn9dr"; depends=[Amelia dplyr MatchIt purrr rstudioapi tibble WhatIf Zelig ZeligChoice ZeligEI]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; @@ -11255,7 +11481,7 @@ in with self; { zip = derive2 { name="zip"; version="1.0.0"; sha256="0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg"; depends=[]; }; zipcode = derive2 { name="zipcode"; version="1.0"; sha256="1lvlf1h5fv412idpdssjfh4fki933dm5nhr41ppl1mf45b9j7azn"; depends=[]; }; zipfR = derive2 { name="zipfR"; version="0.6-10"; sha256="16h5saj0b2qm3qwd7arzamn0n05hn31ybgzq4pb10ri0ajs1cvic"; depends=[]; }; - ziphsmm = derive2 { name="ziphsmm"; version="1.0.6"; sha256="1d1agp57hyxsj0bf6vhj5g5v7f7vnv338kiy7wzji07sc2illw8y"; depends=[Rcpp RcppArmadillo]; }; + ziphsmm = derive2 { name="ziphsmm"; version="1.0.7"; sha256="0ydxxk9rhh4b6rk9x0p04jan1b5vm7mx0vnw6fif5dir87ar146d"; depends=[Rcpp RcppArmadillo]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-6"; sha256="0b16w8s26pi5h911jizwqapgwhdh60gcx0khn3kayf9fi40kyzp0"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.4.2"; sha256="0gdbcnxlm9m88c2av4zy0k3yvm2cvg24804xnsi0mwfgwmnngdh5"; depends=[abind coda Formula matrixcalc rjags]; }; zonator = derive2 { name="zonator"; version="0.5.8"; sha256="1slpyg8h5vb695gf31z66m4isibvckbk7b19vbl8s5svgh7ddl12"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix index cbf890ab1ec6..fc93d8dc6f84 100644 --- a/pkgs/development/tools/analysis/flow/default.nix +++ b/pkgs/development/tools/analysis/flow/default.nix @@ -3,14 +3,14 @@ with lib; stdenv.mkDerivation rec { - version = "0.55.0"; + version = "0.56.0"; name = "flow-${version}"; src = fetchFromGitHub { owner = "facebook"; repo = "flow"; rev = "v${version}"; - sha256 = "042q2197m9l7r6j053dd4hqaqv7dsc5wh8h6aifkcmqa4ypp4w5r"; + sha256 = "0979hcz5qqblcnkc4whkklzdhm4f45gzfl6y4zp0wbq0qi1gv7x4"; }; installPhase = '' diff --git a/pkgs/development/tools/analysis/radare/default.nix b/pkgs/development/tools/analysis/radare/default.nix index 6b7ba2a81cb2..7ca0291fad98 100644 --- a/pkgs/development/tools/analysis/radare/default.nix +++ b/pkgs/development/tools/analysis/radare/default.nix @@ -32,6 +32,6 @@ stdenv.mkDerivation rec { homepage = http://radare.org/; license = stdenv.lib.licenses.gpl2Plus; maintainers = with stdenv.lib.maintainers; [viric]; - platforms = with stdenv.lib.platforms; all; + platforms = with stdenv.lib.platforms; linux; }; } diff --git a/pkgs/development/tools/analysis/snowman/default.nix b/pkgs/development/tools/analysis/snowman/default.nix index f21e9bba3f7f..2caadfc62667 100644 --- a/pkgs/development/tools/analysis/snowman/default.nix +++ b/pkgs/development/tools/analysis/snowman/default.nix @@ -6,13 +6,13 @@ assert qtbase != null -> qt4 == null; stdenv.mkDerivation rec { name = "snowman-${version}"; - version = "2017-07-22"; + version = "2017-08-13"; src = fetchFromGitHub { owner = "yegord"; repo = "snowman"; - rev = "6c4d9cceb56bf2fd0f650313131a2240579d1bea"; - sha256 = "1d0abh0fg637jksk7nl4yl54b4cadinj93qqvsm138zyx7h57xqf"; + rev = "cd9edcddf873fc40d7bcb1bb1eae815faedd3a03"; + sha256 = "10f3kd5m5xw7hqh92ba7dcczwbznxvk1qxg0yycqz7y9mfr2282n"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/tools/build-managers/bazel/0.4.nix b/pkgs/development/tools/build-managers/bazel/0.4.nix new file mode 100644 index 000000000000..2137c5c1497b --- /dev/null +++ b/pkgs/development/tools/build-managers/bazel/0.4.nix @@ -0,0 +1,91 @@ +{ stdenv, fetchurl, jdk, zip, unzip, bash, makeWrapper, which }: + +stdenv.mkDerivation rec { + + version = "0.4.5"; + + meta = with stdenv.lib; { + homepage = https://github.com/bazelbuild/bazel/; + description = "Build tool that builds code quickly and reliably"; + license = licenses.asl20; + maintainers = with maintainers; [ cstrahan philandstuff ]; + platforms = platforms.linux; + }; + + name = "bazel-${version}"; + + src = fetchurl { + url = "https://github.com/bazelbuild/bazel/releases/download/${version}/bazel-${version}-dist.zip"; + sha256 = "0asmq3kxnl4326zhgh13mvcrc8jvmiswjj4ymrq0943q4vj7nwrb"; + }; + + sourceRoot = "."; + + postPatch = '' + for f in $(grep -l -r '#!/bin/bash'); do + substituteInPlace "$f" --replace '#!/bin/bash' '#!${bash}/bin/bash' + done + for f in \ + src/main/java/com/google/devtools/build/lib/analysis/CommandHelper.java \ + src/main/java/com/google/devtools/build/lib/bazel/rules/BazelConfiguration.java \ + src/main/java/com/google/devtools/build/lib/bazel/rules/sh/BazelShRuleClasses.java \ + src/main/java/com/google/devtools/build/lib/rules/cpp/LinkCommandLine.java \ + ; do + substituteInPlace "$f" --replace /bin/bash ${bash}/bin/bash + done + ''; + + buildInputs = [ + stdenv.cc + stdenv.cc.cc.lib + jdk + zip + unzip + makeWrapper + which + ]; + + # These must be propagated since the dependency is hidden in a compressed + # archive. + + propagatedBuildInputs = [ + bash + ]; + + # If TMPDIR is in the unpack dir we run afoul of blaze's infinite symlink + # detector (see com.google.devtools.build.lib.skyframe.FileFunction). + # Change this to $(mktemp -d) as soon as we figure out why. + + buildPhase = '' + export TMPDIR=/tmp + ./compile.sh + ./output/bazel --output_user_root=/tmp/.bazel build //scripts:bash_completion \ + --spawn_strategy=standalone \ + --genrule_strategy=standalone + cp bazel-bin/scripts/bazel-complete.bash output/ + ''; + + # Build the CPP and Java examples to verify that Bazel works. + + doCheck = true; + checkPhase = '' + export TEST_TMPDIR=$(pwd) + ./output/bazel test --test_output=errors \ + examples/cpp:hello-success_test \ + examples/java-native/src/test/java/com/example/myproject:hello + ''; + + # Bazel expects gcc and java to be in the path. + + installPhase = '' + mkdir -p $out/bin + mv output/bazel $out/bin + wrapProgram "$out/bin/bazel" --prefix PATH : "${stdenv.cc}/bin:${jdk}/bin" + mkdir -p $out/share/bash-completion/completions $out/share/zsh/site-functions + mv output/bazel-complete.bash $out/share/bash-completion/completions/ + cp scripts/zsh_completion/_bazel $out/share/zsh/site-functions/ + ''; + + dontStrip = true; + dontPatchELF = true; +} diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix index f30aed29ba13..e0c027ee632e 100644 --- a/pkgs/development/tools/build-managers/bazel/default.nix +++ b/pkgs/development/tools/build-managers/bazel/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { - version = "0.5.4"; + version = "0.6.0"; meta = with stdenv.lib; { homepage = "https://github.com/bazelbuild/bazel/"; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://github.com/bazelbuild/bazel/releases/download/${version}/bazel-${version}-dist.zip"; - sha256 = "1jdb8zbgafhz2qi0ajk34845kpmfhxchdimvwkq6lkb1159v0mr1"; + sha256 = "13jr00jb34ibpqvy1qzzmswc7zfcy82ks7w36iwzh7jlm4l3grd0"; }; sourceRoot = "."; diff --git a/pkgs/development/tools/build-managers/cmake/default.nix b/pkgs/development/tools/build-managers/cmake/default.nix index a912b04d217f..0cb9078aede5 100644 --- a/pkgs/development/tools/build-managers/cmake/default.nix +++ b/pkgs/development/tools/build-managers/cmake/default.nix @@ -17,7 +17,7 @@ with stdenv.lib; let os = stdenv.lib.optionalString; majorVersion = "3.9"; - minorVersion = "1"; + minorVersion = "2"; version = "${majorVersion}.${minorVersion}"; in @@ -28,8 +28,8 @@ stdenv.mkDerivation rec { src = fetchurl { url = "${meta.homepage}files/v${majorVersion}/cmake-${version}.tar.gz"; - # from https://cmake.org/files/v3.9/cmake-3.9.1-SHA-256.txt - sha256 = "d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb"; + # from https://cmake.org/files/v3.9/cmake-3.9.2-SHA-256.txt + sha256 = "954a5801a456ee48e76f01107c9a4961677dd0f3e115275bbd18410dc22ba3c1"; }; prePatch = optionalString (!useSharedLibraries) '' diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix index 45a4d8a8358b..a5ea6df3c8df 100644 --- a/pkgs/development/tools/build-managers/gradle/default.nix +++ b/pkgs/development/tools/build-managers/gradle/default.nix @@ -52,12 +52,12 @@ rec { }; gradle_latest = gradleGen rec { - name = "gradle-4.1"; + name = "gradle-4.2.1"; nativeVersion = "0.14"; src = fetchurl { url = "http://services.gradle.org/distributions/${name}-bin.zip"; - sha256 = "0hzdz5cy5dmyqz73qy80q74aiy87jl5vnxcy3imahgaszffglpfm"; + sha256 = "1h7v133rm81jf0bgv9mgvydl7rgh4430dnsfs66wflfay82cqldm"; }; }; diff --git a/pkgs/development/tools/build-managers/shards/default.nix b/pkgs/development/tools/build-managers/shards/default.nix index 52c5417456ca..b7d75999fdf6 100644 --- a/pkgs/development/tools/build-managers/shards/default.nix +++ b/pkgs/development/tools/build-managers/shards/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { homepage = https://crystal-lang.org/; license = licenses.asl20; description = "Dependency manager for the Crystal language"; - maintainers = with maintainers; [ mingchuan ]; + maintainers = with maintainers; [ sifmelcara ]; platforms = [ "x86_64-linux" "i686-linux" "x86_64-darwin" ]; }; } diff --git a/pkgs/development/tools/casperjs/default.nix b/pkgs/development/tools/casperjs/default.nix index 4485e678ab50..e07b3cd9db74 100644 --- a/pkgs/development/tools/casperjs/default.nix +++ b/pkgs/development/tools/casperjs/default.nix @@ -50,5 +50,6 @@ in stdenv.mkDerivation rec { maintainers = [ stdenv.lib.maintainers.bluescreen303 ]; platforms = stdenv.lib.platforms.linux; + broken = true; }; } diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix index d6b2ce42cdc5..b1607aaaecd8 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix @@ -1,22 +1,22 @@ { lib, buildGoPackage, fetchFromGitLab, fetchurl, go-bindata }: let - version = "9.5.0"; + version = "10.0.0"; # Gitlab runner embeds some docker images these are prebuilt for arm and x86_64 docker_x86_64 = fetchurl { - url = "https://gitlab-ci-multi-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-x86_64.tar.xz"; - sha256 = "05vph5pqw3wlrh76bfgrmhgzsjsf7llzscr9vr7nk3b2pcigawdp"; + url = "https://gitlab-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-x86_64.tar.xz"; + sha256 = "13rfpyzrld20pjhkjzx78qfdmi4w86v6nhq3460bcjpi4kwyd24w"; }; docker_arm = fetchurl { - url = "https://gitlab-ci-multi-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-arm.tar.xz"; - sha256 = "0ilp793kbw0n6nhbcdqc1cb05h2ir27c1rkijyxaqvpczrm11lqj"; + url = "https://gitlab-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-arm.tar.xz"; + sha256 = "19z3rmkmv6z6g27bsjkqkfj8xwpyf9v1fhk2vb81xj5fisjzhmlw"; }; in buildGoPackage rec { inherit version; name = "gitlab-runner-${version}"; - goPackagePath = "gitlab.com/gitlab-org/gitlab-ci-multi-runner"; + goPackagePath = "gitlab.com/gitlab-org/gitlab-runner"; commonPackagePath = "${goPackagePath}/common"; buildFlagsArray = '' -ldflags= @@ -27,9 +27,9 @@ buildGoPackage rec { src = fetchFromGitLab { owner = "gitlab-org"; - repo = "gitlab-ci-multi-runner"; + repo = "gitlab-runner"; rev = "v${version}"; - sha256 = "0zpyvaflq62qazjw60xnzfw52fqbcmjaqig9y8i6wjzdzlm803f0"; + sha256 = "11gp6l5kqcz4spxq552hsnw480vdhp70zmqlgjr906px3r31j7h3"; }; patches = [ ./fix-shell-path.patch ]; @@ -54,8 +54,6 @@ buildGoPackage rec { postInstall = '' install -d $out/bin - # The recommended name is gitlab-runner so we create a symlink with that name - ln -sf gitlab-ci-multi-runner $bin/bin/gitlab-runner ''; meta = with lib; { diff --git a/pkgs/development/tools/devpi-client/default.nix b/pkgs/development/tools/devpi-client/default.nix index f724b65dd823..9da88f6c63d8 100644 --- a/pkgs/development/tools/devpi-client/default.nix +++ b/pkgs/development/tools/devpi-client/default.nix @@ -1,20 +1,22 @@ -{ stdenv, fetchurl, pythonPackages, glibcLocales} : +{ stdenv, pythonPackages, glibcLocales} : pythonPackages.buildPythonApplication rec { - name = "devpi-client-${version}"; - version = "2.7.0"; + name = "${pname}-${version}"; + pname = "devpi-client"; + version = "3.1.0rc1"; - src = fetchurl { - url = "mirror://pypi/d/devpi-client/${name}.tar.gz"; - sha256 = "0z7vaf0a66n82mz0vx122pbynjvkhp2mjf9lskgyv09y3bxzzpj3"; + src = pythonPackages.fetchPypi { + inherit pname version; + sha256 = "0kfyva886k9zxmilqb2yviwqzyvs3n36if3s56y4clbvw9hr2lc3"; }; - - doCheck = false; + # requires devpi-server which is currently not packaged + doCheck = true; + checkInputs = with pythonPackages; [ pytest webtest mock ]; + checkPhase = "py.test"; LC_ALL = "en_US.UTF-8"; - buildInputs = with pythonPackages; [ glibcLocales tox check-manifest pkginfo ]; - - propagatedBuildInputs = with pythonPackages; [ py devpi-common ]; + buildInputs = with pythonPackages; [ glibcLocales pkginfo tox check-manifest ]; + propagatedBuildInputs = with pythonPackages; [ py devpi-common pluggy ]; meta = { homepage = http://doc.devpi.net; diff --git a/pkgs/development/tools/devtodo/default.nix b/pkgs/development/tools/devtodo/default.nix new file mode 100644 index 000000000000..36c489b1171a --- /dev/null +++ b/pkgs/development/tools/devtodo/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchurl, readline, ncurses }: + +stdenv.mkDerivation rec { + name = "devtodo-${version}"; + version = "0.1.20"; + + src = fetchurl { + url = "http://swapoff.org/files/devtodo/${name}.tar.gz"; + sha256 = "029y173njydzlznxmdizrrz4wcky47vqhl87fsb7xjcz9726m71p"; + }; + + buildInputs = [ readline ncurses ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = http://swapoff.org/devtodo1.html; + description = "A hierarchical command-line task manager"; + license = licenses.gpl2; + maintainers = [ maintainers.woffs ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/tools/documentation/mkdocs/default.nix b/pkgs/development/tools/documentation/mkdocs/default.nix new file mode 100644 index 000000000000..144bd059634f --- /dev/null +++ b/pkgs/development/tools/documentation/mkdocs/default.nix @@ -0,0 +1,39 @@ +{ lib, python, fetchFromGitHub }: + +with python.pkgs; + +buildPythonApplication rec { + pname = "mkdocs"; + version = "0.16.3"; + name = "${pname}-${version}"; + + src = fetchFromGitHub { + owner = "mkdocs"; + repo = "mkdocs"; + rev = version; + sha256 = "0gssa5gbd1y2v3azdhf2zh7ayx4ncfag4r2a6fi96jbic64r3qrs"; + }; + + checkInputs = [ + nose nose-exclude mock + ]; + + NOSE_EXCLUDE_TESTS="mkdocs.tests.gh_deploy_tests.TestGitHubDeploy;mkdocs.tests.config.config_tests.ConfigTests"; + + checkPhase = "nosetests mkdocs"; + + propagatedBuildInputs = [ + tornado + livereload + click + pyyaml + markdown + jinja2 + ]; + + meta = { + homepage = http://mkdocs.org/; + description = "Project documentation with Markdown"; + license = lib.licenses.bsd2; + }; +} diff --git a/pkgs/development/tools/guile/g-wrap/default.nix b/pkgs/development/tools/guile/g-wrap/default.nix index da664093d8ac..7c8653a82bea 100644 --- a/pkgs/development/tools/guile/g-wrap/default.nix +++ b/pkgs/development/tools/guile/g-wrap/default.nix @@ -1,30 +1,33 @@ -{ fetchurl, stdenv, guile, libffi, pkgconfig, glib, guile-lib }: +{ fetchurl, stdenv, guile, guile-lib, libffi, pkgconfig, glib }: stdenv.mkDerivation rec { - name = "g-wrap-1.9.15"; + name = "${pname}-${version}"; + pname = "g-wrap"; + version = "1.9.15"; + src = fetchurl { - url = "mirror://savannah/g-wrap/${name}.tar.gz"; + url = "mirror://savannah/${pname}/${name}.tar.gz"; sha256 = "0ak0bha37dfpj9kmyw1r8fj8nva639aw5xr66wr5gd3l1rqf5xhg"; }; - # Note: Glib support is optional, but it's quite useful (e.g., it's - # used by Guile-GNOME). + # Note: Glib support is optional, but it's quite useful (e.g., it's used by + # Guile-GNOME). buildInputs = [ guile pkgconfig glib guile-lib ]; propagatedBuildInputs = [ libffi ]; doCheck = true; - meta = { - description = "G-Wrap, a wrapper generator for Guile"; + meta = with stdenv.lib; { + description = "A wrapper generator for Guile"; longDescription = '' - G-Wrap is a tool (and Guile library) for generating function - wrappers for inter-language calls. It currently only supports - generating Guile wrappers for C functions. + G-Wrap is a tool (and Guile library) for generating function wrappers for + inter-language calls. It currently only supports generating Guile + wrappers for C functions. ''; - homepage = http://www.nongnu.org/g-wrap/; - license = stdenv.lib.licenses.lgpl2Plus; - maintainers = [ stdenv.lib.maintainers.taktoa ]; - platforms = stdenv.lib.platforms.linux; + homepage = "http://www.nongnu.org/g-wrap/"; + license = licenses.lgpl2Plus; + maintainers = with maintainers; [ vyp ]; + platforms = platforms.linux; }; } diff --git a/pkgs/development/tools/guile/guile-lint/default.nix b/pkgs/development/tools/guile/guile-lint/default.nix index 7ca54365be5b..19441c540179 100644 --- a/pkgs/development/tools/guile/guile-lint/default.nix +++ b/pkgs/development/tools/guile/guile-lint/default.nix @@ -1,27 +1,30 @@ -{stdenv, fetchurl, guile}: +{ stdenv, fetchurl, guile }: stdenv.mkDerivation rec { - name = "guile-lint-14"; + name = "guile-lint-${version}"; + version = "14"; + src = fetchurl { - url = "http://download.tuxfamily.org/user42/" + name + ".tar.bz2"; - sha256 = "5bfcf7a623338b2ef81ac097e3e136eaf32856dd0730b7eeaff3161067b5d0be"; + url = "https://download.tuxfamily.org/user42/${name}.tar.bz2"; + sha256 = "1gnhnmki05pkmzpbfc07vmb2iwza6vhy75y03bw2x2rk4fkggz2v"; }; buildInputs = [ guile ]; unpackPhase = ''tar xjvf "$src" && sourceRoot="$PWD/${name}"''; - patchPhase = '' - cat guile-lint.in | \ - sed 's|^exec guile|exec $\{GUILE:-${guile}/bin/guile}|g' > ,,tmp && \ - mv ,,tmp guile-lint.in + + prePatch = '' + substituteInPlace guile-lint.in --replace \ + "exec guile" "exec ${guile}/bin/guile" ''; doCheck = true; - meta = { - description = "Guile-Lint checks syntax and semantics in a Guile program or module"; - homepage = http://user42.tuxfamily.org/guile-lint/index.html; - license = "GPL"; - broken = true; + meta = with stdenv.lib; { + description = "Checks syntax and semantics in a Guile program or module"; + homepage = "https://user42.tuxfamily.org/guile-lint/index.html"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ vyp ]; + platforms = platforms.all; }; } diff --git a/pkgs/development/tools/jq/default.nix b/pkgs/development/tools/jq/default.nix index d79aa0980003..491d65d8882e 100644 --- a/pkgs/development/tools/jq/default.nix +++ b/pkgs/development/tools/jq/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, fetchpatch, oniguruma }: +{ stdenv, fetchurl, fetchpatch, oniguruma }: stdenv.mkDerivation rec { name = "jq-${version}"; @@ -26,15 +26,16 @@ stdenv.mkDerivation rec { patchFlags = [ "-p2" ]; # `src` subdir was introduced after v1.5 was released # jq is linked to libjq: - configureFlags = [ - "LDFLAGS=-Wl,-rpath,\\\${libdir}" - ]; + configureFlags = stdenv.lib.optional (!stdenv.isDarwin) "LDFLAGS=-Wl,-rpath,\\\${libdir}"; + + installCheckPhase = "$out/bin/jq --help"; + doInstallCheck = true; - meta = { + meta = with stdenv.lib; { description = ''A lightweight and flexible command-line JSON processor''; - license = lib.licenses.mit; - maintainers = with lib.maintainers; [ raskin ]; - platforms = with lib.platforms; linux ++ darwin; + license = licenses.mit; + maintainers = with maintainers; [ raskin ]; + platforms = with platforms; linux ++ darwin; downloadPage = "http://stedolan.github.io/jq/download/"; updateWalker = true; inherit version; diff --git a/pkgs/development/tools/kafkacat/default.nix b/pkgs/development/tools/kafkacat/default.nix new file mode 100644 index 000000000000..0d5c6e83c01e --- /dev/null +++ b/pkgs/development/tools/kafkacat/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchFromGitHub, pkgconfig, zlib, rdkafka, yajl }: + +stdenv.mkDerivation rec { + name = "kafkacat-${version}"; + + version = "1.3.1"; + + src = fetchFromGitHub { + owner = "edenhill"; + repo = "kafkacat"; + rev = "${version}"; + sha256 = "1fgs04rclgfwri6vd9lj0mw545nmscav9p6kh7r28k5ap2g0gak5"; + }; + + nativeBuildInputs = [ pkgconfig ]; + + buildInputs = [ zlib rdkafka yajl ]; + + meta = with stdenv.lib; { + description = "A generic non-JVM producer and consumer for Apache Kafka"; + homepage = https://github.com/edenhill/kafkacat; + license = licenses.bsd2; + platforms = platforms.linux ++ platforms.darwin; + maintainers = with maintainers; [ nyarly ]; + }; +} diff --git a/pkgs/development/tools/misc/iozone/default.nix b/pkgs/development/tools/misc/iozone/default.nix index 7e2416808879..4bcf5f1599a6 100644 --- a/pkgs/development/tools/misc/iozone/default.nix +++ b/pkgs/development/tools/misc/iozone/default.nix @@ -7,6 +7,8 @@ let "linux-AMD64" else if stdenv.system == "x86_64-darwin" then "macosx" + else if stdenv.system == "aarch64-linux" then + "linux-arm" else abort "Platform ${stdenv.system} not yet supported."; in @@ -53,7 +55,7 @@ stdenv.mkDerivation rec { description = "IOzone Filesystem Benchmark"; homepage = http://www.iozone.org/; license = stdenv.lib.licenses.unfreeRedistributable; - platforms = ["i686-linux" "x86_64-linux" "x86_64-darwin"]; - maintainers = [ stdenv.lib.maintainers.Baughn ]; + platforms = ["i686-linux" "x86_64-linux" "x86_64-darwin" "aarch64-linux" ]; + maintainers = with stdenv.lib.maintainers; [ Baughn makefu ]; }; } diff --git a/pkgs/development/tools/misc/universal-ctags/default.nix b/pkgs/development/tools/misc/universal-ctags/default.nix index ceff549f3736..2a77fc42602a 100644 --- a/pkgs/development/tools/misc/universal-ctags/default.nix +++ b/pkgs/development/tools/misc/universal-ctags/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, perl, pythonPackages }: +{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, perl, pythonPackages, libiconv }: stdenv.mkDerivation rec { name = "universal-ctags-${version}"; @@ -11,8 +11,8 @@ stdenv.mkDerivation rec { sha256 = "1kbw9ycl2ddzpfs1v4rbqa4gdhw4inrisf4awyaxb7zxfxmbzk1g"; }; - nativeBuildInputs = [ pythonPackages.docutils ]; - buildInputs = [ autoreconfHook pkgconfig ]; + nativeBuildInputs = [ autoreconfHook pkgconfig pythonPackages.docutils ]; + buildInputs = stdenv.lib.optional stdenv.isDarwin libiconv; autoreconfPhase = '' ./autogen.sh --tmpdir diff --git a/pkgs/development/tools/ocaml/utop/default.nix b/pkgs/development/tools/ocaml/utop/default.nix index 0f73f4c54afc..404bf08e74ee 100644 --- a/pkgs/development/tools/ocaml/utop/default.nix +++ b/pkgs/development/tools/ocaml/utop/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, bash, ocaml, findlib, ocamlbuild, camlp4, ocaml_react +{ stdenv, fetchurl, bash, ocaml, findlib, ocamlbuild, camlp4 , lambdaTerm, ocaml_lwt, camomile, zed, cppo, ppx_tools, makeWrapper }: diff --git a/pkgs/development/tools/packer/default.nix b/pkgs/development/tools/packer/default.nix index 11909ec1a19b..f8dc96c2394b 100644 --- a/pkgs/development/tools/packer/default.nix +++ b/pkgs/development/tools/packer/default.nix @@ -1,21 +1,19 @@ { stdenv, buildGoPackage, fetchFromGitHub }: buildGoPackage rec { name = "packer-${version}"; - version = "1.0.3"; + version = "1.1.0"; - goPackagePath = "github.com/mitchellh/packer"; + goPackagePath = "github.com/hashicorp/packer"; subPackages = [ "." ]; src = fetchFromGitHub { - owner = "mitchellh"; + owner = "hashicorp"; repo = "packer"; rev = "v${version}"; - sha256 = "1bd0rv93pxlv58c0x1d4dsjq4pg5qwrm2p7qw83pca7izlncgvfr"; + sha256 = "09hwq6dxyzhpl97akwbb02bjrisz9rf296avg5zj2p5qdsf4y777"; }; - goDeps = ./deps.nix; - meta = with stdenv.lib; { description = "A tool for creating identical machine images for multiple platforms from a single source configuration"; homepage = https://www.packer.io; diff --git a/pkgs/development/tools/packer/deps.nix b/pkgs/development/tools/packer/deps.nix deleted file mode 100644 index 544facda0159..000000000000 --- a/pkgs/development/tools/packer/deps.nix +++ /dev/null @@ -1,11 +0,0 @@ -[ - { - goPackagePath = "github.com/hashicorp/packer"; - fetch = { - type = "git"; - url = "https://github.com/hashicorp/packer"; - rev = "07decf99adc272a386e3a013846248810d9aa690"; - sha256 = "17rrzrlr48spadb9fymn1a0blqggs2mfmqbwfxs0pnw66mhd0fzz"; - }; - } -] diff --git a/pkgs/development/tools/phantomjs2/default.nix b/pkgs/development/tools/phantomjs2/default.nix index 8c03c32655a9..ee5de04a782d 100644 --- a/pkgs/development/tools/phantomjs2/default.nix +++ b/pkgs/development/tools/phantomjs2/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, fetchpatch , bison2, flex, fontconfig, freetype, gperf, icu, openssl, libjpeg , libpng, perl, python, ruby, sqlite, qtwebkit, qmake, qtbase -, darwin, writeScriptBin, cups +, darwin, writeScriptBin, cups, makeWrapper }: let @@ -47,6 +47,7 @@ in stdenv.mkDerivation rec { buildInputs = [ bison2 flex fontconfig freetype gperf icu openssl libjpeg libpng perl python ruby sqlite qtwebkit qtbase + makeWrapper ] ++ stdenv.lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ AGL ApplicationServices AppKit Cocoa OpenGL darwin.libobjc fakeClang cups @@ -98,6 +99,9 @@ in stdenv.mkDerivation rec { ${darwin.configd}/Library/Frameworks/SystemConfiguration.framework/SystemConfiguration \ /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration \ $out/bin/phantomjs + '' + '' + wrapProgram $out/bin/phantomjs \ + --prefix PATH : ${stdenv.lib.makeBinPath [ qtbase ]} ''; preFixup = '' diff --git a/pkgs/development/tools/skopeo/default.nix b/pkgs/development/tools/skopeo/default.nix index 9028a796381c..2c3fb763dc52 100644 --- a/pkgs/development/tools/skopeo/default.nix +++ b/pkgs/development/tools/skopeo/default.nix @@ -4,7 +4,7 @@ with stdenv.lib; buildGoPackage rec { name = "skopeo-${version}"; - version = "0.1.22"; + version = "0.1.23"; rev = "v${version}"; goPackagePath = "github.com/projectatomic/skopeo"; @@ -16,7 +16,7 @@ buildGoPackage rec { inherit rev; owner = "projectatomic"; repo = "skopeo"; - sha256 = "0aivs37bcvx3g22a9r3q1vj2ahw323g1vaq9jzbmifm9k0pb07jy"; + sha256 = "1axxnm87fpsd7q28v951ilhmzd42k8wyh741gdfdcajjwglfj0nn"; }; patches = [ diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix index 8d86c96e4bfe..91c0054fe91a 100644 --- a/pkgs/development/tools/vagrant/default.nix +++ b/pkgs/development/tools/vagrant/default.nix @@ -2,7 +2,7 @@ , libxml2, libxslt, libffi, makeWrapper, p7zip, xar, gzip, cpio }: let - version = "1.9.5"; + version = "2.0.0"; rake = buildRubyGem { inherit ruby; gemName = "rake"; @@ -17,9 +17,9 @@ let else "system ${stdenv.system} not supported"; sha256 = { - "x86_64-linux" = "16ijzaacfbqrgh561bf51747d2rv8kydgs14dfdr572qi0f88baw"; - "i686-linux" = "0lvkb4k0a34a8hzlsi0apf056rhyprh5w0gn16d0n2ijnaf9j2yk"; - "x86_64-darwin" = "070mrczsx1j0jl9sx6963l3hrk9anqa13r008wk1d22d25xj25mc"; + "x86_64-linux" = "184amybyxqlxqr8fk6lyx2znmci1fazsiby90q7d1xx2ihz3hm5x"; + "i686-linux" = "19r1m5jila40x69m1qz2hslz7v1hdg8wwdhcq8d5qjnzwfmlw2qz"; + "x86_64-darwin" = "154400iqs01235bclr8ic7g9jv01lfs766bmv7p8784r3xsblvsr"; }."${stdenv.system}" or (throw "system ${stdenv.system} not supported"); arch = builtins.replaceStrings ["-linux" "-darwin"] ["" ""] stdenv.system; diff --git a/pkgs/development/tools/vcstool/default.nix b/pkgs/development/tools/vcstool/default.nix new file mode 100644 index 000000000000..fae0ca88124f --- /dev/null +++ b/pkgs/development/tools/vcstool/default.nix @@ -0,0 +1,28 @@ +{ stdenv, python3Packages +, git, bazaar, subversion }: + +with python3Packages; + +buildPythonApplication rec { + name = "${pname}-${version}"; + pname = "vcstool"; + version = "0.1.31"; + + src = fetchPypi { + inherit pname version; + sha256 = "0n2zkvy2km9ky9lljf1mq5nqyqi5qqzfy2a6sgkjg2grvsk7abxc"; + }; + + propagatedBuildInputs = [ pyyaml ]; + + makeWrapperArgs = ["--prefix" "PATH" ":" "${stdenv.lib.makeBinPath [ git bazaar subversion ]}"]; + + doCheck = false; # requires network + + meta = with stdenv.lib; { + description = "Provides a command line tool to invoke vcs commands on multiple repositories"; + homepage = https://github.com/dirk-thomas/vcstool; + license = licenses.asl20; + maintainer = with maintainers; [ sivteck ]; + }; +} diff --git a/pkgs/development/web/kore/default.nix b/pkgs/development/web/kore/default.nix new file mode 100644 index 000000000000..eac2046a233d --- /dev/null +++ b/pkgs/development/web/kore/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchFromGitHub, openssl }: + +stdenv.mkDerivation rec { + name = "kore-${version}"; + version = "2.0.0"; + + src = fetchFromGitHub { + owner = "jorisvink"; + repo = "kore"; + rev = "${version}-release"; + sha256 = "1jjhx9gfjzpsrs7b9rgb46k6v03azrxz9fq7vkn9zyz6zvnjj614"; + }; + + buildInputs = [ openssl ]; + + postPatch = '' + # Do not require kore to be on PATH when it launches itself as a subprocess. + sed -ie "s+\"kore\"+\"$out/bin/kore\"+" src/cli.c + ''; + + makeFlags = [ "PREFIX=$(out)" ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "An easy to use web application framework for C"; + homepage = https://kore.io; + license = licenses.isc; + platforms = platforms.all; + maintainers = with maintainers; [ johnmh ]; + }; +} diff --git a/pkgs/development/web/nodejs/v8.nix b/pkgs/development/web/nodejs/v8.nix index 244c236cd18b..013cab8f57bc 100644 --- a/pkgs/development/web/nodejs/v8.nix +++ b/pkgs/development/web/nodejs/v8.nix @@ -10,11 +10,11 @@ let baseName = if enableNpm then "nodejs" else "nodejs-slim"; in stdenv.mkDerivation (nodejs // rec { - version = "8.5.0"; + version = "8.6.0"; name = "${baseName}-${version}"; src = fetchurl { url = "https://nodejs.org/download/release/v${version}/node-v${version}.tar.xz"; - sha256 = "0g2wyy9zdjzm9c0vbjn8bn49s1b2c7r2iwdfc4dpx7h4wpcfbkg1"; + sha256 = "14vy9xnyfz44j460hkrx423g7acpzzyqlxiv6sgmna9qj8872w5i"; }; patches = stdenv.lib.optionals stdenv.isDarwin [ ./no-xcode-v7.patch ]; diff --git a/pkgs/games/flightgear/default.nix b/pkgs/games/flightgear/default.nix index 2d7f5566c5d2..743194269917 100644 --- a/pkgs/games/flightgear/default.nix +++ b/pkgs/games/flightgear/default.nix @@ -2,18 +2,18 @@ , freeglut, freealut, mesa, libICE, libjpeg, openal, openscenegraph, plib , libSM, libunwind, libX11, xproto, libXext, xextproto, libXi, inputproto , libXmu, libXt, simgear, zlib, boost, cmake, libpng, udev, fltk13, apr -, makeDesktopItem, qtbase +, makeDesktopItem, qtbase, qtdeclarative, glew }: let - version = "2016.4.4"; - shortVersion = "2016.4"; + version = "2017.3.1"; + shortVersion = "2017.3"; data = stdenv.mkDerivation rec { name = "flightgear-base-${version}"; src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/FlightGear-${version}-data.tar.bz2"; - sha256 = "0s4nlkwi9jfc408agsl0w5xl3vajrvplc66k3nwg92wsr614pz9x"; + sha256 = "166q0fsbp17lx1l1n6i8cfk3d1i79pasz1liya09z6m2i1pb026z"; }; phases = [ "installPhase" ]; @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/${name}.tar.bz2"; - sha256 = "1z7s9m2g85g8q9zxawhpal84rq2jin1ppchshbwi460gwk5r46fm"; + sha256 = "1kccf91vmxnzyki6grx09s10dvr4j6qrz34ikj7jn81g5scisbkg"; }; # Of all the files in the source and data archives, there doesn't seem to be @@ -56,6 +56,7 @@ stdenv.mkDerivation rec { freeglut freealut mesa libICE libjpeg openal openscenegraph plib libSM libunwind libX11 xproto libXext xextproto libXi inputproto libXmu libXt simgear zlib boost cmake libpng udev fltk13 apr qtbase + glew qtdeclarative ]; postInstall = '' @@ -66,10 +67,10 @@ stdenv.mkDerivation rec { do wrapProgram $f --set FG_ROOT "${data}/share/FlightGear" done - - ''; + enableParallelBuilding = true; + meta = with stdenv.lib; { description = "Flight simulator"; maintainers = with maintainers; [ raskin the-kenny ]; diff --git a/pkgs/games/odamex/default.nix b/pkgs/games/odamex/default.nix index ab2cd1090fb4..441171662560 100644 --- a/pkgs/games/odamex/default.nix +++ b/pkgs/games/odamex/default.nix @@ -17,5 +17,6 @@ stdenv.mkDerivation rec { license = stdenv.lib.licenses.gpl2; platforms = stdenv.lib.platforms.unix; maintainers = with stdenv.lib.maintainers; [ MP2E ]; + broken = true; }; } diff --git a/pkgs/games/openrw/default.nix b/pkgs/games/openrw/default.nix index 0c235383acff..6dd098ee7b8e 100644 --- a/pkgs/games/openrw/default.nix +++ b/pkgs/games/openrw/default.nix @@ -1,16 +1,20 @@ -{ stdenv, fetchgit, cmake, sfml, mesa, bullet, glm, libmad, x11 }: +{ stdenv, fetchgit, cmake, sfml, mesa, bullet, glm, libmad, x11, openal +, SDL2, boost, ffmpeg }: stdenv.mkDerivation rec { - version = "2016-06-29"; + version = "2017-09-17"; name = "openrw-${version}"; + src = fetchgit { url = "https://github.com/rwengine/openrw"; - rev = "46a7254a41d9f6e1eda8d31e742de492abb2540e"; - sha256 = "16ip9779dy59xcj9src2i4zp8jq2h0h5mb4a7d5cpkhd3xlcpabm"; + rev = "11e90c61e56b60240251cd080f175ddff7d7a101"; + sha256 = "16qklk9yc4ssxxkicxvww4gmg1c7cm6vhyilyv287vhz1fq9sz49"; fetchSubmodules = true; }; - buildInputs = [ cmake sfml mesa bullet glm libmad x11 ]; + buildInputs = [ + cmake sfml mesa bullet glm libmad x11 openal SDL2 boost ffmpeg + ]; meta = with stdenv.lib; { description = "Unofficial open source recreation of the classic Grand Theft Auto III game executable"; diff --git a/pkgs/games/spring/default.nix b/pkgs/games/spring/default.nix index 634389d1410d..40e97567d394 100644 --- a/pkgs/games/spring/default.nix +++ b/pkgs/games/spring/default.nix @@ -50,5 +50,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2; maintainers = [ maintainers.phreedom maintainers.qknight maintainers.domenkozar ]; platforms = platforms.linux; + broken = true; }; } diff --git a/pkgs/games/stockfish/default.nix b/pkgs/games/stockfish/default.nix index 629d7b1ea82f..14b9b424345d 100644 --- a/pkgs/games/stockfish/default.nix +++ b/pkgs/games/stockfish/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { much stronger than the best human chess grandmasters. ''; maintainers = with maintainers; [ luispedro peti ]; - platforms = with platforms; i686 ++ x86_64; + platforms = ["x86_64-linux" "i686-linux"]; license = licenses.gpl2; }; diff --git a/pkgs/misc/base16-builder/default.nix b/pkgs/misc/base16-builder/default.nix new file mode 100644 index 000000000000..be8d42a4292b --- /dev/null +++ b/pkgs/misc/base16-builder/default.nix @@ -0,0 +1,16 @@ +{ stdenv, pkgs }: + +let + # node-packages*.nix generated via: + # + # % node2nix --input node-packages.json \ + # --output node-packages-generated.nix \ + # --composition node-packages.nix \ + # --node-env ./../../development/node-packages/node-env.nix \ + # --pkg-name nodejs-6_x + # + nodePackages = import ./node-packages.nix { + inherit pkgs; + inherit (stdenv) system; + }; +in nodePackages.base16-builder diff --git a/pkgs/misc/base16-builder/node-packages-generated.nix b/pkgs/misc/base16-builder/node-packages-generated.nix new file mode 100644 index 000000000000..6ec938cfdefb --- /dev/null +++ b/pkgs/misc/base16-builder/node-packages-generated.nix @@ -0,0 +1,1437 @@ +# This file has been generated by node2nix 1.3.0. Do not edit! + +{nodeEnv, fetchurl, fetchgit, globalBuildInputs ? []}: + +let + sources = { + "chalk-1.1.3" = { + name = "chalk"; + packageName = "chalk"; + version = "1.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/chalk/-/chalk-1.1.3.tgz"; + sha1 = "a8115c55e4a702fe4d150abd3872822a7e09fc98"; + }; + }; + "ejs-2.5.7" = { + name = "ejs"; + packageName = "ejs"; + version = "2.5.7"; + src = fetchurl { + url = "https://registry.npmjs.org/ejs/-/ejs-2.5.7.tgz"; + sha1 = "cc872c168880ae3c7189762fd5ffc00896c9518a"; + }; + }; + "fs-promise-0.3.1" = { + name = "fs-promise"; + packageName = "fs-promise"; + version = "0.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/fs-promise/-/fs-promise-0.3.1.tgz"; + sha1 = "bf34050368f24d6dc9dfc6688ab5cead8f86842a"; + }; + }; + "js-yaml-3.10.0" = { + name = "js-yaml"; + packageName = "js-yaml"; + version = "3.10.0"; + src = fetchurl { + url = "https://registry.npmjs.org/js-yaml/-/js-yaml-3.10.0.tgz"; + sha512 = "0h26sq1bwxc45bm0hvlcadrbk4bizzaw729wvw690ya7mpys45bqfzdqwhjkdrnq0i44dzxckykz4bix22jfdyfg1asybg3yzczjsrv"; 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+ }) + ]; + }) + sources."pify-2.3.0" + (sources."pinkie-promise-2.0.1" // { + dependencies = [ + sources."pinkie-2.0.4" + ]; + }) + (sources."strip-bom-2.0.0" // { + dependencies = [ + sources."is-utf8-0.2.1" + ]; + }) + ]; + }) + (sources."path-type-1.1.0" // { + dependencies = [ + sources."graceful-fs-4.1.11" + sources."pify-2.3.0" + (sources."pinkie-promise-2.0.1" // { + dependencies = [ + sources."pinkie-2.0.4" + ]; + }) + ]; + }) + ]; + }) + ]; + }) + (sources."redent-1.0.0" // { + dependencies = [ + (sources."indent-string-2.1.0" // { + dependencies = [ + (sources."repeating-2.0.1" // { + dependencies = [ + (sources."is-finite-1.0.2" // { + dependencies = [ + sources."number-is-nan-1.0.1" + ]; + }) + ]; + }) + ]; + }) + (sources."strip-indent-1.0.1" // { + dependencies = [ + sources."get-stdin-4.0.1" + ]; + }) + ]; + }) + sources."trim-newlines-1.0.0" + ]; + }) + sources."open-0.0.5" + (sources."update-notifier-0.6.3" // { + dependencies = [ + (sources."boxen-0.3.1" // { + dependencies = [ + sources."filled-array-1.1.0" + sources."object-assign-4.1.1" + (sources."repeating-2.0.1" // { + dependencies = [ + (sources."is-finite-1.0.2" // { + dependencies = [ + sources."number-is-nan-1.0.1" + ]; + }) + ]; + }) + (sources."string-width-1.0.2" // { + dependencies = [ + sources."code-point-at-1.1.0" + (sources."is-fullwidth-code-point-1.0.0" // { + dependencies = [ + sources."number-is-nan-1.0.1" + ]; + }) + (sources."strip-ansi-3.0.1" // { + dependencies = [ + sources."ansi-regex-2.1.1" + ]; + }) + ]; + }) + sources."widest-line-1.0.0" + ]; + }) + (sources."configstore-2.1.0" // { + dependencies = [ + (sources."dot-prop-3.0.0" // { + dependencies = [ + sources."is-obj-1.0.1" + ]; + }) + sources."graceful-fs-4.1.11" + (sources."mkdirp-0.5.1" // { + dependencies = [ + sources."minimist-0.0.8" + ]; + }) + sources."object-assign-4.1.1" + sources."os-tmpdir-1.0.2" + (sources."osenv-0.1.4" // { + dependencies = [ + sources."os-homedir-1.0.2" + ]; + }) + sources."uuid-2.0.3" + (sources."write-file-atomic-1.3.4" // { + dependencies = [ + sources."imurmurhash-0.1.4" + sources."slide-1.1.6" + ]; + }) + (sources."xdg-basedir-2.0.0" // { + dependencies = [ + sources."os-homedir-1.0.2" + ]; + }) + ]; + }) + sources."is-npm-1.0.0" + (sources."latest-version-2.0.0" // { + dependencies = [ + (sources."package-json-2.4.0" // { + dependencies = [ + (sources."got-5.7.1" // { + dependencies = [ + (sources."create-error-class-3.0.2" // { + dependencies = [ + sources."capture-stack-trace-1.0.0" + ]; + }) + sources."duplexer2-0.1.4" + sources."is-redirect-1.0.0" + sources."is-retry-allowed-1.1.0" + sources."is-stream-1.1.0" + sources."lowercase-keys-1.0.0" + sources."node-status-codes-1.0.0" + sources."object-assign-4.1.1" + (sources."parse-json-2.2.0" // { + dependencies = [ + (sources."error-ex-1.3.1" // { + dependencies = [ + sources."is-arrayish-0.2.1" + ]; + }) + ]; + }) + (sources."pinkie-promise-2.0.1" // { + dependencies = [ + sources."pinkie-2.0.4" + ]; + }) + sources."read-all-stream-3.1.0" + (sources."readable-stream-2.3.3" // { + dependencies = [ + sources."core-util-is-1.0.2" + sources."inherits-2.0.3" + sources."isarray-1.0.0" + sources."process-nextick-args-1.0.7" + sources."safe-buffer-5.1.1" + sources."string_decoder-1.0.3" + sources."util-deprecate-1.0.2" + ]; + }) + sources."timed-out-3.1.3" + sources."unzip-response-1.0.2" + (sources."url-parse-lax-1.0.0" // { + dependencies = [ + sources."prepend-http-1.0.4" + ]; + }) + ]; + }) + (sources."registry-auth-token-3.3.1" // { + dependencies = [ + (sources."rc-1.2.1" // { + dependencies = [ + sources."deep-extend-0.4.2" + sources."ini-1.3.4" + sources."minimist-1.2.0" + sources."strip-json-comments-2.0.1" + ]; + }) + sources."safe-buffer-5.1.1" + ]; + }) + (sources."registry-url-3.1.0" // { + dependencies = [ + (sources."rc-1.2.1" // { + dependencies = [ + sources."deep-extend-0.4.2" + sources."ini-1.3.4" + sources."minimist-1.2.0" + sources."strip-json-comments-2.0.1" + ]; + }) + ]; + }) + sources."semver-5.4.1" + ]; + }) + ]; + }) + (sources."semver-diff-2.1.0" // { + dependencies = [ + sources."semver-5.4.1" + ]; + }) + ]; + }) + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Base16 Builder is a nimble command-line tool that generates themes for your favourite programs."; + homepage = "https://github.com/base16-builder/base16-builder#readme"; + license = "MIT"; + }; + production = true; + }; +} \ No newline at end of file diff --git a/pkgs/misc/base16-builder/node-packages.json b/pkgs/misc/base16-builder/node-packages.json new file mode 100644 index 000000000000..3266c128bc4e --- /dev/null +++ b/pkgs/misc/base16-builder/node-packages.json @@ -0,0 +1,3 @@ +[ + "base16-builder" +] diff --git a/pkgs/misc/base16-builder/node-packages.nix b/pkgs/misc/base16-builder/node-packages.nix new file mode 100644 index 000000000000..bb98d7ab9cc9 --- /dev/null +++ b/pkgs/misc/base16-builder/node-packages.nix @@ -0,0 +1,16 @@ +# This file has been generated by node2nix 1.3.0. Do not edit! + +{pkgs ? import <nixpkgs> { + inherit system; + }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-6_x"}: + +let + nodeEnv = import ./../../development/node-packages/node-env.nix { + inherit (pkgs) stdenv python2 utillinux runCommand writeTextFile; + inherit nodejs; + }; +in +import ./node-packages-generated.nix { + inherit (pkgs) fetchurl fetchgit; + inherit nodeEnv; +} \ No newline at end of file diff --git a/pkgs/misc/base16/default.nix b/pkgs/misc/base16/default.nix deleted file mode 100644 index 569370a79446..000000000000 --- a/pkgs/misc/base16/default.nix +++ /dev/null @@ -1,62 +0,0 @@ -{ stdenv, fetchgit, fetchurl, ruby, which, coreutils }: - -stdenv.mkDerivation rec { - rev = "9b24598c08a27780f87c318e6145c1468b9880ba"; - name = "base16-2015-09-29_rev${builtins.substring 0 6 rev}"; - - src = fetchgit { - inherit rev; - url = "https://github.com/chriskempson/base16-builder"; - sha256 = "1zicwam16nsdg74rnza65jwwf4mlpkgv35p9gkr8ydy60l7agzwy"; - }; - - patches = [ - (fetchurl { - url = "https://github.com/chriskempson/base16-builder/pull/341.patch"; - sha256 = "1r7i22qr5maxnp8a84mwin0a48klb8fym2hkw15ichkqfn3cdqdn"; - }) - (fetchurl { - url = "https://github.com/chriskempson/base16-builder/pull/331.patch"; - sha256 = "0hbyc9i62ihms00rk1ap0apjw8zf5axrvsk63vdy1hfyd9n5y2yf"; - }) - (fetchurl { - url = "https://github.com/chriskempson/base16-builder/pull/330.patch"; - sha256 = "1gfsbrxzdk3pz9dmyxismc3mzgm0cz8pkmf52iz4s9gq7vkv1d14"; - }) - (fetchurl { - url = "https://github.com/chriskempson/base16-builder/pull/325.patch"; - sha256 = "0n10yzm0n4g77z29s5f69261qy6x6kkjc6nj6ccdjlncz0bk6d8k"; - }) - (fetchurl { - url = "https://github.com/chriskempson/base16-builder/pull/318.patch"; - sha256 = "0c044bimdbiw2n2nzzivzrvxhwk6i93lc4ydah56xhs6pp1x0i60"; - }) - (fetchurl { - url = "https://github.com/chriskempson/base16-builder/pull/346.patch"; - sha256 = "145wblgqz28wq9lvgh1i705y97zblc6d488j7xm230ywy81abbwi"; - }) - ]; - - buildInputs = [ ruby which ]; - - buildPhase = '' - sed -i -e "s|\/bin\/false|${coreutils}/bin/false|" templates/shell/dark.sh.erb - sed -i -e "s|\/bin\/false|${coreutils}/bin/false|" templates/shell/light.sh.erb - patchShebangs base16 - ./base16 - ''; - - installPhase = '' - mkdir -p $out - cp output/* $out -R - ''; - - meta = with stdenv.lib; { - description = "Base16 provides carefully chosen syntax highlighting and a default set of sixteen colors suitable for a wide range of applications. Base16 is both a color scheme and a template."; - homepage = https://github.com/chriskempson/base16; - license = licenses.mit; - maintainers = with maintainers; [ garbas ]; - platforms = with platforms; unix; - }; - -} diff --git a/pkgs/misc/emulators/darcnes/default.nix b/pkgs/misc/emulators/darcnes/default.nix index 12c76c89790a..70e7351e295c 100644 --- a/pkgs/misc/emulators/darcnes/default.nix +++ b/pkgs/misc/emulators/darcnes/default.nix @@ -1,28 +1,24 @@ -{stdenv, fetchurl, libX11, libXt, libXext, libXaw }: +{ stdenv, fetchurl, libX11, libXt, libXext, libXaw }: -assert stdenv.system == "i686-linux"; +stdenv.mkDerivation rec { + name = "darcnes-${version}"; + version = "9b0401"; -stdenv.mkDerivation { - name = "darcnes-9b0401"; src = fetchurl { - url = http://www.dridus.com/~nyef/darcnes/download/dn9b0401.tgz; + url = "https://web.archive.org/web/20130511081532/http://www.dridus.com/~nyef/darcnes/download/dn${version}.tgz"; sha256 = "05a7mh51rg7ydb414m3p5mm05p4nz2bgvspqzwm3bhbj7zz543k3"; }; - buildInputs = [ libX11 libXt libXext libXaw ]; - - installPhase = '' - mkdir -p $out/bin - cp darcnes $out/bin - ''; - patches = [ ./label.patch ]; + buildInputs = [ libX11 libXt libXext libXaw ]; + installPhase = "install -Dt $out/bin darcnes"; + meta = { - homepage = http://www.dridus.com/~nyef/darcnes/; - description = "Multi-System emulator, specially for NES"; - /* Prohibited commercial use, credit required. */ + homepage = https://web.archive.org/web/20130502171725/http://www.dridus.com/~nyef/darcnes/; + description = "Sega Master System, Game Gear, SG-1000, NES, ColecoVision and Apple II emulator"; + # Prohibited commercial use, credit required. license = stdenv.lib.licenses.free; + platforms = [ "i686-linux" ]; }; - } diff --git a/pkgs/misc/emulators/epsxe/default.nix b/pkgs/misc/emulators/epsxe/default.nix new file mode 100644 index 000000000000..e367d6a14984 --- /dev/null +++ b/pkgs/misc/emulators/epsxe/default.nix @@ -0,0 +1,55 @@ +{ stdenv, fetchurl, alsaLib, curl, gdk_pixbuf, gcc, glib, gtk3, + libX11, openssl, ncurses5, SDL, SDL_ttf, unzip, zlib, wrapGAppsHook }: + +with stdenv.lib; + +stdenv.mkDerivation rec { + name = "epsxe-${version}"; + version = "2.0.5"; + + src = with stdenv.lib; let + version2 = concatStrings (splitString "." version); + platform = "linux" + (optionalString stdenv.is64bit "_x64"); + in fetchurl { + url = "http://www.epsxe.com/files/ePSXe${version2}${platform}.zip"; + sha256 = if stdenv.is64bit + then "16fa9qc2xhaz1f6294m0b56s5l86cbmclwm9w3mqnch0yjsrvab0" + else "1677lclam557kp8jwvchdrk27zfj50fqx2q9i3bcx26d9k61q3kl"; + }; + + nativeBuildInputs = [ unzip wrapGAppsHook ]; + sourceRoot = "."; + + buildInputs = [ + alsaLib + curl + gdk_pixbuf + glib + gtk3 + libX11 + openssl + ncurses5 + SDL + SDL_ttf + stdenv.cc.cc.lib + zlib + ]; + + dontStrip = true; + + installPhase = '' + install -D ${if stdenv.is64bit then "epsxe_x64" else "ePSXe"} $out/bin/epsxe + patchelf \ + --set-interpreter $(cat ${stdenv.cc}/nix-support/dynamic-linker) \ + --set-rpath ${makeLibraryPath buildInputs} \ + $out/bin/epsxe + ''; + + meta = { + homepage = http://epsxe.com/; + description = "Enhanced PSX (PlayStation 1) emulator"; + license = licenses.unfree; + maintainers = with maintainers; [ yegortimoshenko ]; + platforms = [ "i686-linux" "x86_64-linux" ]; + }; +} diff --git a/pkgs/misc/emulators/fakenes/default.nix b/pkgs/misc/emulators/fakenes/default.nix index 6e9253b299e4..4d698563469e 100644 --- a/pkgs/misc/emulators/fakenes/default.nix +++ b/pkgs/misc/emulators/fakenes/default.nix @@ -1,7 +1,7 @@ {stdenv, fetchurl, allegro, openal, mesa, zlib, hawknl, freeglut, libX11, libXxf86vm, libXcursor, libXpm }: -stdenv.mkDerivation { +stdenv.mkDerivation { name = "fakenes-0.5.9b3"; src = fetchurl { url = mirror://sourceforge/fakenes/fakenes-0.5.9-beta3.tar.gz; @@ -18,7 +18,7 @@ stdenv.mkDerivation { cp fakenes $out/bin ''; - NIX_LDFLAGS = "-lX11 -lXxf86vm -lXcursor -lXpm"; + NIX_LDFLAGS = "-lX11 -lXxf86vm -lXcursor -lXpm"; patches = [ ./build.patch ]; @@ -27,5 +27,6 @@ stdenv.mkDerivation { license = stdenv.lib.licenses.gpl2Plus; description = "Portable Open Source NES Emulator"; platforms = stdenv.lib.platforms.linux; + broken = true; }; } diff --git a/pkgs/misc/emulators/mednaffe/default.nix b/pkgs/misc/emulators/mednaffe/default.nix index 21e75a72d61c..c62d9c90ca79 100644 --- a/pkgs/misc/emulators/mednaffe/default.nix +++ b/pkgs/misc/emulators/mednaffe/default.nix @@ -1,28 +1,30 @@ -{ stdenv, fetchFromGitHub, pkgconfig, gtk2, mednafen }: +{ stdenv, fetchFromGitHub, makeWrapper, autoreconfHook, pkgconfig, wrapGAppsHook +, gtk2 ? null, gtk3 ? null, mednafen }: -stdenv.mkDerivation rec { +with stdenv.lib; - version = "0.8"; +stdenv.mkDerivation rec { name = "mednaffe-${version}"; + version = "0.8.6"; src = fetchFromGitHub { - repo = "mednaffe"; - owner = "AmatCoder"; - rev = "v${version}"; - sha256 = "1j4py4ih14fa6dv0hka03rs4mq19ir83qkbxsz3695a4phmip0jr"; + owner = "AmatCoder"; + repo = "mednaffe"; + rev = "v${version}"; + sha256 = "13l7gls430dcslpan39k0ymdnib2v6crdsmn6bs9k9g30nfnqi6m"; }; - prePatch = '' - substituteInPlace src/mednaffe.c --replace "binpath = NULL" "binpath = g_strdup( \"${mednafen}/bin/mednafen\" )" - ''; + nativeBuildInputs = [ autoreconfHook makeWrapper pkgconfig wrapGAppsHook ]; + buildInputs = [ gtk2 gtk3 mednafen ]; - buildInputs = [ pkgconfig gtk2 mednafen ]; + configureFlags = [ (enableFeature (gtk3 != null) "gtk3") ]; + postInstall = "wrapProgram $out/bin/mednaffe --set PATH ${mednafen}/bin"; - meta = with stdenv.lib; { - description = "A GTK based frontend for mednafen"; + meta = { + description = "GTK-based frontend for mednafen emulator"; homepage = https://github.com/AmatCoder/mednaffe; - license = licenses.gpl3; - maintainers = [ maintainers.sheenobu ]; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ sheenobu yegortimoshenko ]; platforms = platforms.linux; }; } diff --git a/pkgs/misc/emulators/ppsspp/default.nix b/pkgs/misc/emulators/ppsspp/default.nix index ac11b574ca11..159eefad6662 100644 --- a/pkgs/misc/emulators/ppsspp/default.nix +++ b/pkgs/misc/emulators/ppsspp/default.nix @@ -1,37 +1,43 @@ -{ stdenv, fetchgit, zlib, libpng, qt4, qmake4Hook, pkgconfig -, withGamepads ? true, SDL # SDL is used for gamepad functionality -}: +{ stdenv, fetchFromGitHub, cmake, pkgconfig, qtbase, qtmultimedia +, glew, libzip, snappy, zlib, withGamepads ? true, SDL2 }: -assert withGamepads -> (SDL != null); - -let - version = "1.3"; - fstat = x: fn: "-D" + fn + "=" + (if x then "ON" else "OFF"); -in +assert withGamepads -> (SDL2 != null); with stdenv.lib; -stdenv.mkDerivation rec{ - name = "PPSSPP-${version}"; - src = fetchgit { - url = "https://github.com/hrydgard/ppsspp.git"; - rev = "refs/tags/v${version}"; +stdenv.mkDerivation rec { + name = "ppsspp-${version}"; + version = "1.4.2"; + + src = fetchFromGitHub { + owner = "hrydgard"; + repo = "ppsspp"; + rev = "v${version}"; fetchSubmodules = true; - sha256 = "0l8vgdlw657r8gv7rz8iqa6zd9zrbzw10pwhcnahzil7w9qrd03g"; + sha256 = "0m4qkhx7q496sm7ibg2n7rm3npxzfr93iraxgndk0vhfk8vy8w75"; }; - buildInputs = [ zlib libpng qt4 ] - ++ (if withGamepads then [ SDL ] else [ ]); + patchPhase = '' + echo 'const char *PPSSPP_GIT_VERSION = "${src.rev}";' >> git-version.cpp + substituteInPlace UI/NativeApp.cpp --replace /usr/share $out/share + ''; + + nativeBuildInputs = [ cmake pkgconfig ]; + buildInputs = [ qtbase qtmultimedia glew libzip snappy zlib ] + ++ optionals withGamepads [ SDL2 SDL2.dev ]; - nativeBuildInputs = [ pkgconfig qmake4Hook ]; + cmakeFlags = [ "-DCMAKE_BUILD_TYPE=Release" "-DUSING_QT_UI=ON" ]; - qmakeFlags = [ "PPSSPPQt.pro" ]; + installPhase = '' + mkdir -p $out/bin $out/share/ppsspp + mv PPSSPPQt $out/bin/ppsspp + mv assets $out/share/ppsspp + ''; - preConfigure = "cd Qt"; - installPhase = "mkdir -p $out/bin && cp ppsspp $out/bin"; + enableParallelBuilding = true; meta = { - homepage = http://www.ppsspp.org/; - description = "A PSP emulator, the Qt4 version"; + homepage = https://www.ppsspp.org/; + description = "A PSP emulator for Android, Windows, Mac and Linux, written in C++"; license = licenses.gpl2Plus; maintainers = with maintainers; [ fuuzetsu AndersonTorres ]; platforms = platforms.linux ++ platforms.darwin ++ platforms.cygwin; diff --git a/pkgs/misc/emulators/snes9x-gtk/default.nix b/pkgs/misc/emulators/snes9x-gtk/default.nix index c6f4df1e5c06..f2d3abc0de3b 100644 --- a/pkgs/misc/emulators/snes9x-gtk/default.nix +++ b/pkgs/misc/emulators/snes9x-gtk/default.nix @@ -1,26 +1,26 @@ -{stdenv, fetchurl, nasm, SDL, zlib, libpng, ncurses, mesa, intltool, gtk2, pkgconfig, libxml2, xlibsWrapper, libpulseaudio}: +{ stdenv, fetchFromGitHub, autoreconfHook, intltool, pkgconfig +, SDL, zlib, gtk2, libxml2, libXv }: stdenv.mkDerivation rec { name = "snes9x-gtk-${version}"; - version = "1.53"; + version = "1.54.1"; - src = fetchurl { - url = "http://files.ipherswipsite.com/snes9x/snes9x-${version}-src.tar.bz2"; - sha256 = "9f7c5d2d0fa3fe753611cf94e8879b73b8bb3c0eab97cdbcb6ab7376efa78dc3"; + src = fetchFromGitHub { + owner = "snes9xgit"; + repo = "snes9x"; + rev = version; + sha256 = "10fqm7lk36zj2gnx0ypps0nlws923f60b0zj4pmq9apawgx8k6rw"; }; - buildInputs = [ nasm SDL zlib libpng ncurses mesa intltool gtk2 pkgconfig libxml2 xlibsWrapper libpulseaudio]; + nativeBuildInputs = [ autoreconfHook intltool pkgconfig ]; - sourceRoot = "snes9x-${version}-src/gtk"; + sourceRoot = "snes9x-${version}-src"; + preAutoreconf = "cd gtk; intltoolize"; + + buildInputs = [ SDL zlib gtk2 libxml2 libXv ]; + installPhase = "install -Dt $out/bin snes9x-gtk"; - configureFlags = "--prefix=$out/ --with-opengl"; - - installPhase = '' - mkdir -p $out/bin - cp snes9x-gtk $out/bin - ''; - - meta = { + meta = with stdenv.lib; { description = "A portable, freeware Super Nintendo Entertainment System (SNES) emulator"; longDescription = '' Snes9x is a portable, freeware Super Nintendo Entertainment System (SNES) @@ -28,9 +28,9 @@ stdenv.mkDerivation rec { and Super Famicom Nintendo game systems on your PC or Workstation; which includes some real gems that were only ever released in Japan. ''; - license = stdenv.lib.licenses.lgpl2; - maintainers = [ stdenv.lib.maintainers.qknight ]; + license = licenses.lgpl2; + maintainers = with maintainers; [ qknight ]; homepage = http://www.snes9x.com/; - platforms = stdenv.lib.platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/misc/themes/deepin/default.nix b/pkgs/misc/themes/deepin/default.nix new file mode 100644 index 000000000000..d8a3ecaa4119 --- /dev/null +++ b/pkgs/misc/themes/deepin/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub, gtk-engine-murrine }: + +stdenv.mkDerivation rec { + name = "deepin-gtk-theme-${version}"; + version = "17.10.4"; + + src = fetchFromGitHub { + owner = "linuxdeepin"; + repo = "deepin-gtk-theme"; + rev = version; + sha256 = "1hb0y72fzmcj2yl6q7mbc0c7yxkd1qgnyw4vixdqxnxk2c82sxzw"; + }; + + buildInputs = [ gtk-engine-murrine ]; + + makeFlags = [ "PREFIX=$(out)" ]; + + meta = { + description = "Deepin GTK Theme"; + homepage = https://github.com/linuxdeepin/deepin-gtk-theme; + license = stdenv.lib.licenses.lgpl3; + platforms = stdenv.lib.platforms.unix; + maintainers = [ stdenv.lib.maintainers.romildo ]; + }; +} diff --git a/pkgs/misc/themes/gtk3/numix-solarized-gtk-theme/default.nix b/pkgs/misc/themes/gtk3/numix-solarized-gtk-theme/default.nix new file mode 100644 index 000000000000..4ede14d3bb39 --- /dev/null +++ b/pkgs/misc/themes/gtk3/numix-solarized-gtk-theme/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchFromGitHub, sass, glib, gdk_pixbuf }: + +stdenv.mkDerivation rec { + version = "20160919"; + name = "numix-solarized-gtk-theme-${version}"; + + src = fetchFromGitHub { + owner = "Ferdi265"; + repo = "numix-solarized-gtk-theme"; + rev = version; + sha256 = "0243w918ycmf9vnkzfvwnrxz9zc6xxk7167h8ywxj901pqy59kad"; + }; + + postPatch = '' + substituteInPlace Makefile --replace \ + 'INSTALL_DIR=$(DESTDIR)/usr/share/themes' "INSTALL_DIR=$out/share/themes" + patchShebangs . + ''; + + buildInputs = [sass glib gdk_pixbuf]; + + meta = with stdenv.lib; { + description = "GTK3.20-compatible version of bitterologist's Numix Solarized from deviantart"; + longDescription = '' + This is a fork of the Numix GTK theme that replaces the colors of the theme + and icons to use the solarized theme with a solarized green accent color. + This theme supports both the dark and light theme, just as Numix proper. + ''; + homepage = https://github.com/Ferdi265/numix-solarized-gtk-theme; + downloadPage = https://github.com/Ferdi265/numix-solarized-gtk-theme/releases; + license = licenses.gpl3; + maintainers = [ maintainers.offline ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/misc/vim-plugins/default.nix b/pkgs/misc/vim-plugins/default.nix index 7944533c1129..adc2a6104e7b 100644 --- a/pkgs/misc/vim-plugins/default.nix +++ b/pkgs/misc/vim-plugins/default.nix @@ -16,7 +16,7 @@ in # TL;DR # Add your plugin to ./vim-plugin-names -# Regenerate via `nix-shell -p vimPlugins.pluginnames2nix --command "vim-plugin-names-to-nix"` +# Regenerate via `nix-shell -I nixpkgs=/path/to/your/local/fork -p vimPlugins.pluginnames2nix --command "vim-plugin-names-to-nix"` # Copy the generated expression(s) into this file. # If plugin is complicated then make changes to ./vim2nix/additional-nix-code @@ -1173,6 +1173,17 @@ rec { }; + robotframework-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation + name = "robotframework-vim-2017-04-14"; + src = fetchgit { + url = "https://github.com/mfukar/robotframework-vim"; + rev = "75d5b371a4da2a090a2872d55bd0dead013f334e"; + sha256 = "091ac5rq6f1a7j2q3dy9rc00vckv21m4wd29ijj63jannr02v5ad"; + }; + dependencies = []; + + }; + vim-startify = buildVimPluginFrom2Nix { # created by nix#NixDerivation name = "vim-startify-2017-06-15"; src = fetchgit { diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names index 7e9802e050ed..acde3cf2e5b6 100644 --- a/pkgs/misc/vim-plugins/vim-plugin-names +++ b/pkgs/misc/vim-plugins/vim-plugin-names @@ -92,6 +92,7 @@ "github:martinda/Jenkinsfile-vim-syntax" "github:megaannum/forms" "github:megaannum/self" +"github:mfukar/robotframework-vim" "github:mhinz/vim-startify" "github:michaeljsmith/vim-indent-object" "github:mileszs/ack.vim" diff --git a/pkgs/misc/vim-plugins/vim-utils.nix b/pkgs/misc/vim-plugins/vim-utils.nix index 87b2f9d3e188..b659266ace7f 100644 --- a/pkgs/misc/vim-plugins/vim-utils.nix +++ b/pkgs/misc/vim-plugins/vim-utils.nix @@ -383,6 +383,8 @@ rec { unpackPhase ? "", configurePhase ? "", buildPhase ? "", + preInstall ? "", + postInstall ? "", path ? (builtins.parseDrvName name).name, addonInfo ? null, ... @@ -390,9 +392,11 @@ rec { addRtp "${rtpPath}/${path}" (stdenv.mkDerivation (a // { name = namePrefix + name; - inherit unpackPhase configurePhase buildPhase addonInfo; + inherit unpackPhase configurePhase buildPhase addonInfo preInstall postInstall; installPhase = '' + runHook preInstall + target=$out/${rtpPath}/${path} mkdir -p $out/${rtpPath} cp -r . $target @@ -401,6 +405,8 @@ rec { if [ -n "$addonInfo" ]; then echo "$addonInfo" > $target/addon-info.json fi + + runHook postInstall ''; })); diff --git a/pkgs/os-specific/darwin/reattach-to-user-namespace/default.nix b/pkgs/os-specific/darwin/reattach-to-user-namespace/default.nix index e2776475432f..b14008e11f10 100644 --- a/pkgs/os-specific/darwin/reattach-to-user-namespace/default.nix +++ b/pkgs/os-specific/darwin/reattach-to-user-namespace/default.nix @@ -1,12 +1,12 @@ -{ stdenv, fetchgit }: +{ stdenv, fetchurl }: -stdenv.mkDerivation { - name = "reattach-to-user-namespace-2.5"; +stdenv.mkDerivation rec { + name = "reattach-to-user-namespace-${version}"; + version = "2.6"; - src = fetchgit { - url = "https://github.com/ChrisJohnsen/tmux-MacOSX-pasteboard.git"; - sha256 = "0kv11vi54g6waf9941hy1pwmwyab0y7hbmbkcgwhzb5ja21ysc2a"; - rev = "3689998acce9990726c8a68a85298ab693a62458"; + src = fetchurl { + url = "https://github.com/ChrisJohnsen/tmux-MacOSX-pasteboard/archive/v2.6.tar.gz"; + sha256 = "1d8ynzkdlxyyky9f88f7z50g9lwdydkpb2n7gkw3jgl2ac569xc0"; }; buildFlags = "ARCHES=x86_64"; @@ -16,7 +16,10 @@ stdenv.mkDerivation { cp reattach-to-user-namespace $out/bin/ ''; - meta = { - platforms = stdenv.lib.platforms.darwin; + meta = with stdenv.lib; { + description = "A wrapper that provides access to the Mac OS X pasteboard service"; + license = licenses.bsd2; + maintainers = with maintainers; [ lnl7 ]; + platforms = platforms.darwin; }; } diff --git a/pkgs/os-specific/linux/batman-adv/alfred.nix b/pkgs/os-specific/linux/batman-adv/alfred.nix index 9105f635ae93..002e458b24de 100644 --- a/pkgs/os-specific/linux/batman-adv/alfred.nix +++ b/pkgs/os-specific/linux/batman-adv/alfred.nix @@ -1,14 +1,14 @@ { stdenv, fetchurl, pkgconfig, gpsd, libcap, libnl }: let - ver = "2017.2"; + ver = "2017.3"; in stdenv.mkDerivation rec { name = "alfred-${ver}"; src = fetchurl { url = "http://downloads.open-mesh.org/batman/releases/batman-adv-${ver}/${name}.tar.gz"; - sha256 = "00sagxzkx0gqdkvc84w4bjy833l7n10hqalxdwkfxxwqwammclix"; + sha256 = "0202mxp7hwflkqnkkajx5lv1nxjng45q5gcvvdv68x46p8ikb5n2"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/os-specific/linux/batman-adv/batctl.nix b/pkgs/os-specific/linux/batman-adv/batctl.nix index 7ea8cf6d1bf6..6ff3903c4f2f 100644 --- a/pkgs/os-specific/linux/batman-adv/batctl.nix +++ b/pkgs/os-specific/linux/batman-adv/batctl.nix @@ -1,14 +1,14 @@ { stdenv, fetchurl, pkgconfig, libnl }: let - ver = "2017.2"; + ver = "2017.3"; in stdenv.mkDerivation rec { name = "batctl-${ver}"; src = fetchurl { url = "http://downloads.open-mesh.org/batman/releases/batman-adv-${ver}/${name}.tar.gz"; - sha256 = "0v2k9ylmk8i85p69dh6gh134f081gm1clq1vnhn6x4831n8x0q64"; + sha256 = "1a48kc2v8cb1757pxlli96qf3d7x7k3qw04rjadfs0iy09sz1ir9"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/os-specific/linux/batman-adv/default.nix b/pkgs/os-specific/linux/batman-adv/default.nix index 4514e18f44f5..4f8a85d5d887 100644 --- a/pkgs/os-specific/linux/batman-adv/default.nix +++ b/pkgs/os-specific/linux/batman-adv/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, kernel }: -let base = "batman-adv-2017.2"; in +let base = "batman-adv-2017.3"; in stdenv.mkDerivation rec { name = "${base}-${kernel.version}"; src = fetchurl { url = "http://downloads.open-mesh.org/batman/releases/${base}/${base}.tar.gz"; - sha256 = "0krr6waxkmms23cacfzngddxy1vq577s54wy2fgx6lyb4579g1yl"; + sha256 = "1m541czjwgi4rfhjr6rg9r9c3cp2ncnif4ln7ri926zigwlxs3l3"; }; hardeningDisable = [ "pic" ]; diff --git a/pkgs/os-specific/linux/bcc/default.nix b/pkgs/os-specific/linux/bcc/default.nix index 24686e73e23a..bade98dc411f 100644 --- a/pkgs/os-specific/linux/bcc/default.nix +++ b/pkgs/os-specific/linux/bcc/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, makeWrapper, cmake, llvmPackages, kernel, +{ stdenv, fetchFromGitHub, makeWrapper, cmake, llvmPackages_39, kernel, flex, bison, elfutils, python, pythonPackages, luajit, netperf, iperf }: stdenv.mkDerivation rec { @@ -12,7 +12,9 @@ stdenv.mkDerivation rec { sha256 = "19lkqmilfjmj7bnhxlacd0waa5db8gf4lng12fy2zgji0d77vm1d"; }; - buildInputs = [ makeWrapper cmake llvmPackages.llvm llvmPackages.clang-unwrapped kernel + # llvm 4.0 leads to segmentation faults, this will be fixed in llvm 5.0 + # https://github.com/iovisor/bcc/issues/1276#issuecomment-319888478 + buildInputs = [ makeWrapper cmake llvmPackages_39.llvm llvmPackages_39.clang-unwrapped kernel flex bison elfutils python pythonPackages.netaddr luajit netperf iperf ]; diff --git a/pkgs/os-specific/linux/bluez/default.nix b/pkgs/os-specific/linux/bluez/default.nix index f0a59f36e433..e9a1f314abc1 100644 --- a/pkgs/os-specific/linux/bluez/default.nix +++ b/pkgs/os-specific/linux/bluez/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, dbus, glib, alsaLib, - pythonPackages, readline, libsndfile, udev, libical, + pythonPackages, readline, udev, libical, systemd, enableWiimote ? false }: assert stdenv.isLinux; @@ -15,13 +15,10 @@ stdenv.mkDerivation rec { pythonPath = with pythonPackages; [ dbus pygobject2 pygobject3 recursivePthLoader ]; - buildInputs = - [ pkgconfig dbus glib alsaLib pythonPackages.python pythonPackages.wrapPython - readline libsndfile udev libical - # Disables GStreamer; not clear what it gains us other than a - # zillion extra dependencies. - # gstreamer gst-plugins-base - ]; + buildInputs = [ + pkgconfig dbus glib alsaLib pythonPackages.python pythonPackages.wrapPython + readline udev libical + ]; outputs = [ "out" "dev" "test" ]; @@ -51,10 +48,8 @@ stdenv.mkDerivation rec { makeFlags = "rulesdir=$(out)/lib/udev/rules.d"; - # FIXME: Move these into a separate package to prevent Bluez from - # depending on Python etc. postInstall = '' - mkdir -p $test/test + mkdir -p $test/{bin,test} cp -a test $test pushd $test/test for a in \ @@ -65,7 +60,7 @@ stdenv.mkDerivation rec { list-devices \ monitor-bluetooth \ ; do - ln -s ../test/$a $out/bin/bluez-$a + ln -s ../test/$a $test/bin/bluez-$a done popd wrapPythonProgramsIn $test/test "$test/test $pythonPath" diff --git a/pkgs/os-specific/linux/fscrypt/default.nix b/pkgs/os-specific/linux/fscrypt/default.nix index 1564069a0a98..8efef4fac4bd 100644 --- a/pkgs/os-specific/linux/fscrypt/default.nix +++ b/pkgs/os-specific/linux/fscrypt/default.nix @@ -4,7 +4,7 @@ buildGoPackage rec { name = "fscrypt-${version}"; - version = "0.2.1"; + version = "0.2.2"; goPackagePath = "github.com/google/fscrypt"; @@ -12,7 +12,7 @@ buildGoPackage rec { owner = "google"; repo = "fscrypt"; rev = version; - sha256 = "0ais6l0dxinnspi6cjnzyk55cdkfsz2bzbaybg6cb4q8a5kzaccq"; + sha256 = "0a85vj1zsybhzvvgdvlw6ywh2a6inmrmc95pfa1js4vkx0ixf1kh"; }; buildInputs = [ libargon2 pam ]; diff --git a/pkgs/os-specific/linux/iproute/default.nix b/pkgs/os-specific/linux/iproute/default.nix index 1d312be42ec7..b64278ae4ba0 100644 --- a/pkgs/os-specific/linux/iproute/default.nix +++ b/pkgs/os-specific/linux/iproute/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "iproute2-${version}"; - version = "4.12.0"; + version = "4.13.0"; src = fetchurl { url = "mirror://kernel/linux/utils/net/iproute2/${name}.tar.xz"; - sha256 = "0zdxdsxyaazl85xhwskvsmpyzwf5qp21cvjsi1lw3xnrc914q2if"; + sha256 = "0l2w84cwr54gaw3cbxijf614l76hx8mgcz57v81rwl68z3nq3yww"; }; preConfigure = '' diff --git a/pkgs/os-specific/linux/iwd/default.nix b/pkgs/os-specific/linux/iwd/default.nix index adaca90650d5..52c980494136 100644 --- a/pkgs/os-specific/linux/iwd/default.nix +++ b/pkgs/os-specific/linux/iwd/default.nix @@ -3,16 +3,16 @@ let ell = fetchgit { url = https://git.kernel.org/pub/scm/libs/ell/ell.git; - rev = "58e873d7463f3a7f91e02260585bfa50cbc77668"; - sha256 = "12k1f1iarm29j8k16mhw83xx7r3bama4lp0fchhnj7iwxrpgs4gh"; + rev = "e0dbdfbd5992bd3e78029b83930b9020e74cdaa5"; + sha256 = "031m1vvcrhggnyvvqyrqpzldi2amsbvhdfcxrypzqz58vysk69vm"; }; in stdenv.mkDerivation rec { - name = "iwd-unstable-2017-06-02"; + name = "iwd-unstable-2017-09-22"; src = fetchgit { url = https://git.kernel.org/pub/scm/network/wireless/iwd.git; - rev = "6c64ae34619bf7f18cba007d8b0374badbe7c17e"; - sha256 = "19rkf6lk213hdfs40ija7salars08zw6k5i5djdlpcn1j6y69i36"; + rev = "31631e1935337910c7bc0c3eb215f579143c1fe0"; + sha256 = "0xl8ali5hy7ragdc4palm857y0prcg32294hv3vv28r9r4x4llcm"; }; configureFlags = [ diff --git a/pkgs/os-specific/linux/kernel/linux-4.12.nix b/pkgs/os-specific/linux/kernel/linux-4.12.nix deleted file mode 100644 index bff0f5db9538..000000000000 --- a/pkgs/os-specific/linux/kernel/linux-4.12.nix +++ /dev/null @@ -1,11 +0,0 @@ -{ stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args: - -import ./generic.nix (args // rec { - version = "4.12.14"; - extraMeta.branch = "4.12"; - - src = fetchurl { - url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "09zxmknh6awhqmj8dyq95bdlwcasryy35hkjxjlzixdgn52kzaw6"; - }; -} // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.13.nix b/pkgs/os-specific/linux/kernel/linux-4.13.nix index d1c4d8ba8e7d..043a39ec95a4 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.13.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.13.nix @@ -1,11 +1,11 @@ { stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args: import ./generic.nix (args // rec { - version = "4.13.3"; + version = "4.13.5"; extraMeta.branch = "4.13"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1ayai3i0jakxzszpijhknjiwwi055wa74bpmnr0n7dh2l5s2rlh3"; + sha256 = "1qi5zxby5qwdv0485gia2jz38dly4ncn10zi3grcckwxc3d5ms59"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index 5033bb88f79a..e9b9fb54bfc8 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,11 +1,11 @@ { stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args: import ./generic.nix (args // rec { - version = "4.9.51"; + version = "4.9.53"; extraMeta.branch = "4.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "12mag09scyzi5a352y39y4b6rjh89qqca53hhmjc396q09hsdyl3"; + sha256 = "095k7kpzic0c2vhwnfm5vcp9j60lyf4qyx2pj9vkp68bpcrmm49j"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-hardened-copperhead.nix b/pkgs/os-specific/linux/kernel/linux-hardened-copperhead.nix index a2bf05647830..d141d7f4211c 100644 --- a/pkgs/os-specific/linux/kernel/linux-hardened-copperhead.nix +++ b/pkgs/os-specific/linux/kernel/linux-hardened-copperhead.nix @@ -3,9 +3,9 @@ with stdenv.lib; let - version = "4.13.3"; + version = "4.13.5"; revision = "a"; - sha256 = "1w1waqrzji17f7zmnkr7afbd2yz0xqf6m3g8dz2bkd2kzv07vzx5"; + sha256 = "139qa6iyyjwn81v6z66ry1sifdvkbnql45m740djc0gv37il7mzv"; # modVersion needs to be x.y.z, will automatically add .0 if needed modVersion = concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))); diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index 7d67bc2ff605..fb51760ec16a 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -1,13 +1,13 @@ { stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args: import ./generic.nix (args // rec { - version = "4.14-rc2"; - modDirVersion = "4.14.0-rc2"; + version = "4.14-rc3"; + modDirVersion = "4.14.0-rc3"; extraMeta.branch = "4.14"; src = fetchurl { url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz"; - sha256 = "0ahcmr0y9i47lwjn140w436hg68apnh8rl66y56qdvdic8f61mj4"; + sha256 = "049x4fpcj8d6577lhzrns7w36mj21pfr4ijw01r0l6n3w86z28b7"; }; # Should the testing kernels ever be built on Hydra? diff --git a/pkgs/os-specific/linux/mba6x_bl/default.nix b/pkgs/os-specific/linux/mba6x_bl/default.nix index 3116c50435a7..a656db306459 100644 --- a/pkgs/os-specific/linux/mba6x_bl/default.nix +++ b/pkgs/os-specific/linux/mba6x_bl/default.nix @@ -1,23 +1,16 @@ { fetchFromGitHub, kernel, stdenv }: -with stdenv.lib; - -let pkgName = "mba6x_bl"; -in - stdenv.mkDerivation rec { - name = "${pkgName}-${version}"; - version = "2016-04-22"; + name = "mba6x_bl-2016-12-08"; src = fetchFromGitHub { owner = "patjak"; - repo = pkgName; - rev = "d05c125efe182376ddab30d486994ec00e144650"; - sha256 = "15h90z3ijq4lv37nmx70xqggcvn21vr7mki2psk1jyj88in3j3xn"; + repo = "mba6x_bl"; + rev = "b96aafd30c18200b4ad1f6eb995bc19200f60c47"; + sha256 = "10payvfxahazdxisch4wm29fhl8y07ki72q4c78sl4rn73sj6yjq"; }; enableParallelBuilding = true; - hardeningDisable = [ "pic" ]; makeFlags = [ @@ -25,7 +18,7 @@ stdenv.mkDerivation rec { "INSTALL_MOD_PATH=$(out)" ]; - meta = { + meta = with stdenv.lib; { description = "MacBook Air 6,1 and 6,2 (mid 2013) backlight driver"; homepage = https://github.com/patjak/mba6x_bl; license = licenses.gpl2; diff --git a/pkgs/os-specific/linux/nvidia-x11/builder.sh b/pkgs/os-specific/linux/nvidia-x11/builder.sh index 99813d38236b..cd7733f43a48 100755 --- a/pkgs/os-specific/linux/nvidia-x11/builder.sh +++ b/pkgs/os-specific/linux/nvidia-x11/builder.sh @@ -46,7 +46,8 @@ installPhase() { # Install ICDs. install -Dm644 nvidia.icd $out/etc/OpenCL/vendors/nvidia.icd - if [ -e nvidia_icd.json ]; then + if [ -e nvidia_icd.json.template ]; then + sed "s#__NV_VK_ICD__#libGLX_nvidia.so#" nvidia_icd.json.template > nvidia_icd.json install -Dm644 nvidia_icd.json $out/share/vulkan/icd.d/nvidia.json fi if [ "$useGLVND" = "1" ]; then diff --git a/pkgs/os-specific/linux/nvidia-x11/default.nix b/pkgs/os-specific/linux/nvidia-x11/default.nix index 22ceb1b2378b..ba9b332e6d71 100644 --- a/pkgs/os-specific/linux/nvidia-x11/default.nix +++ b/pkgs/os-specific/linux/nvidia-x11/default.nix @@ -6,11 +6,11 @@ in { # Policy: use the highest stable version as the default (on our master). stable = generic { - version = "384.69"; - sha256_32bit = "1zgq9vji0ndadvql3bsnd0a6p7pq0vr8d0yb5c8b22i2h9smhw1v"; - sha256_64bit = "0l3np6cx2rnb2q89zbnq4lvfcjl2g7i56hxwcb11ggijqm7ridx7"; - settingsSha256 = "064va75p7dnkhy4hyi9b1gl4wjmrpjksg4cyiwl6n3lkmjnvmnwy"; - persistencedSha256 = "0ijq25gnihw34qhkba62l5fy6lwkma94i0fxp8084byyilm3fwms"; + version = "384.90"; + sha256_32bit = "0mq0h7g56m9zvr42ipy2664ph922754l0pdp8wpsmzfpkzg6g9lp"; + sha256_64bit = "1ggylpzw1j217w64rspw4fhvq25wz0la0hhy0b1kxjpwy8h6ipqd"; + settingsSha256 = "023jfbsxsbkjk78i9i6wd0sybv5hib2d7mfvy635w3anjcrsk5il"; + persistencedSha256 = "166ya8pnv4frvrsp0x5zkg8li85vipags03wy6dlf8s940al92z2"; }; beta = generic { diff --git a/pkgs/os-specific/linux/spl/default.nix b/pkgs/os-specific/linux/spl/default.nix index 2d8ee2719da9..cd0c283edbb2 100644 --- a/pkgs/os-specific/linux/spl/default.nix +++ b/pkgs/os-specific/linux/spl/default.nix @@ -68,8 +68,8 @@ in }; splUnstable = common { - version = "2017-08-11"; - rev = "9df9692637aeee416f509c7f39655beb2d35b549"; - sha256 = "1dggf6xqgk2f7vccv6cgvr8krj7h9f921szp1j2qbxnnq41m37mi"; + version = "2017-09-26"; + rev = "e8474f9ad3b3d23c3277535c4f53f8fd1e6cbd74"; + sha256 = "0251cnffgx98nckgz6imwa8dnvba44wc02aacmr1n430gmq72xra"; }; } diff --git a/pkgs/os-specific/linux/sysdig/default.nix b/pkgs/os-specific/linux/sysdig/default.nix index ca5cea0a0128..18d473e21941 100644 --- a/pkgs/os-specific/linux/sysdig/default.nix +++ b/pkgs/os-specific/linux/sysdig/default.nix @@ -3,13 +3,13 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "sysdig-${version}"; - version = "0.17.0"; + version = "0.18.0"; src = fetchFromGitHub { owner = "draios"; repo = "sysdig"; rev = version; - sha256 = "0xw4in2yb3ynpc8jwl95j92kbyr7fzda3mab8nyxcyld7gshrlvd"; + sha256 = "1hmkjvfg3371hp873mnkjq9cirqszw2ji4p7mb6jcn9ihwxil2z2"; }; buildInputs = [ @@ -29,35 +29,13 @@ stdenv.mkDerivation rec { "-DluaL_getn(L,i)=((int)lua_objlen(L,i))" ]; - postPatch = '' - sed 's|curl/curlbuild\.h|curl/system.h|' -i \ - userspace/libsinsp/marathon_http.cpp \ - userspace/libsinsp/mesos_http.cpp - ''; - preConfigure = '' export INSTALL_MOD_PATH="$out" '' + optionalString (kernel != null) '' export KERNELDIR="${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" ''; - libPath = makeLibraryPath [ - zlib - luajit - ncurses - jsoncpp - curl - jq - openssl - libb64 - gcc - stdenv.cc.cc - ]; - - postInstall = optionalString (!stdenv.isDarwin) '' - patchelf --set-rpath "$libPath" "$out/bin/sysdig" - patchelf --set-rpath "$libPath" "$out/bin/csysdig" - '' + optionalString (kernel != null) '' + postInstall = optionalString (kernel != null) '' make install_driver kernel_dev=${kernel.dev} kernel_dev=''${kernel_dev#/nix/store/} diff --git a/pkgs/os-specific/linux/wireguard/default.nix b/pkgs/os-specific/linux/wireguard/default.nix index 277c6d19f5b3..5391a699b925 100644 --- a/pkgs/os-specific/linux/wireguard/default.nix +++ b/pkgs/os-specific/linux/wireguard/default.nix @@ -6,11 +6,11 @@ assert kernel != null -> stdenv.lib.versionAtLeast kernel.version "3.10"; let name = "wireguard-${version}"; - version = "0.0.20170810"; + version = "0.0.20171001"; src = fetchurl { url = "https://git.zx2c4.com/WireGuard/snapshot/WireGuard-${version}.tar.xz"; - sha256 = "ab96230390625aad6f4816fa23aef6e9f7fee130f083d838919129ff12089bf7"; + sha256 = "ecff9a184685b7dd2d81576eba5bd96bb59031c9e9b5eeee05d6dc298f30998e"; }; meta = with stdenv.lib; { diff --git a/pkgs/os-specific/linux/zfs/default.nix b/pkgs/os-specific/linux/zfs/default.nix index c3af49e08f20..6ab9063d7194 100644 --- a/pkgs/os-specific/linux/zfs/default.nix +++ b/pkgs/os-specific/linux/zfs/default.nix @@ -157,10 +157,10 @@ in { incompatibleKernelVersion = null; # this package should point to a version / git revision compatible with the latest kernel release - version = "2017-09-12"; + version = "2017-09-26"; - rev = "ded8f06a3cfee60b3a8ea5309e9c4d0e567ed3b5"; - sha256 = "0yn4fg4a00hpflmmr0jbbhfb921nygpw2xbbjy35abl57k6zk375"; + rev = "7e98073379353a05498ac5a2f1a5df2a2257d6b0"; + sha256 = "1hydfhmngpq31gxkxipqxnin74l760d1ia202h12vsgix9sp32h7"; isUnstable = true; extraPatches = [ diff --git a/pkgs/servers/amqp/qpid-cpp/default.nix b/pkgs/servers/amqp/qpid-cpp/default.nix index adbf156730eb..6c256d14fe78 100644 --- a/pkgs/servers/amqp/qpid-cpp/default.nix +++ b/pkgs/servers/amqp/qpid-cpp/default.nix @@ -19,6 +19,8 @@ stdenv.mkDerivation rec { sed -i '/ENV/d' src/CMakeLists.txt ''; + NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations -Wno-error=unused-function"; + meta = { homepage = http://qpid.apache.org; repositories.git = git://git.apache.org/qpid.git; diff --git a/pkgs/servers/consul/default.nix b/pkgs/servers/consul/default.nix index ebc2685c122f..728e7034a199 100644 --- a/pkgs/servers/consul/default.nix +++ b/pkgs/servers/consul/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "consul-${version}"; - version = "0.7.5"; + version = "0.9.3"; rev = "v${version}"; goPackagePath = "github.com/hashicorp/consul"; @@ -11,7 +11,7 @@ buildGoPackage rec { owner = "hashicorp"; repo = "consul"; inherit rev; - sha256 = "0zh4j5p0v41v7i6v084dgsdchx1azjs2mjb3dlfdv671rsnwi54z"; + sha256 = "1176frp7kimpycsmz9wrbizf46jgxr8jq7hz5w4q1x90lswvrxv3"; }; # Keep consul.ui for backward compatability diff --git a/pkgs/servers/dgraph/default.nix b/pkgs/servers/dgraph/default.nix index 1712476b923b..06aef0babd39 100644 --- a/pkgs/servers/dgraph/default.nix +++ b/pkgs/servers/dgraph/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "dgraph-${version}"; - version = "0.8.1"; + version = "0.8.2"; goPackagePath = "github.com/dgraph-io/dgraph"; @@ -10,13 +10,13 @@ buildGoPackage rec { owner = "dgraph-io"; repo = "dgraph"; rev = "v${version}"; - sha256 = "1gls2pvgcmd364x84gz5fafs7pwkll4k352rg1lmv70wvzyydsdr"; + sha256 = "0zc5bda8m2srjbk0gy1nnm0bya8if0kmk1szqr1qv3xifdzmi4nf"; }; extraOutputsToInstall = [ "dashboard" ]; goDeps = ./deps.nix; - subPackages = [ "cmd/dgraph" "cmd/dgraphloader" ]; + subPackages = [ "cmd/dgraph" "cmd/dgraphloader" "cmd/bulkloader"]; # let's move the dashboard to a different output, to prevent $bin from # depending on $out @@ -36,6 +36,7 @@ buildGoPackage rec { # Removing it fixes cycle between $out and $bin install_name_tool -delete_rpath $out/lib $bin/bin/dgraph install_name_tool -delete_rpath $out/lib $bin/bin/dgraphloader + install_name_tool -delete_rpath $out/lib $bin/bin/bulkloader ''; meta = { diff --git a/pkgs/servers/dgraph/deps.nix b/pkgs/servers/dgraph/deps.nix index 2e03c75489b2..89e00e0d8cb3 100644 --- a/pkgs/servers/dgraph/deps.nix +++ b/pkgs/servers/dgraph/deps.nix @@ -94,8 +94,8 @@ fetch = { type = "git"; url = "https://github.com/coreos/etcd"; - rev = "1ebeef5cbfe69c0dab2bc701ee5307eed7a7d8d2"; - sha256 = "12lidn1a8nwsk6nlwyfirrxkxhs4lhj53f4cd19xm8w070q0mg19"; + rev = "9d43462d174c664f5edf313dec0de31e1ef4ed47"; + sha256 = "0qxqjxhhciaacag1jz2rlncmlgw861ig2yx993ylvfm30jvyj2cj"; }; } { @@ -112,8 +112,8 @@ fetch = { type = "git"; url = "https://github.com/dgraph-io/badger"; - rev = "ad23a425b3c87b8223780cb882bed568ca14b9f0"; - sha256 = "1xjd05vska1kanmgdhp5cvkn2i6236rqphrc9i4kfjndgwkmas57"; + rev = "64df7f57d9ee20d7b28de4a3eea90bf8d7310a77"; + sha256 = "1ikgzn2l62kb238n0wm6s95py5ypv71p09w7zyvzkjf34x675mzz"; }; } { @@ -139,8 +139,8 @@ fetch = { type = "git"; url = "https://github.com/golang/geo"; - rev = "3a42ea109208469f16baf9e090135dd0e82ece5c"; - sha256 = "1fzlakjj94gv516q7gd9qycn91lij7wmjbdv0vsrh6qnxvgqr8hw"; + rev = "31fb0106dc4a947e5aaee1fe186e56447f839510"; + sha256 = "00w4kwm98hrgr3ggfdk1h7qa5gp00z4s0j0iwgwd9rgadb59kb2c"; }; } { @@ -292,8 +292,8 @@ fetch = { type = "git"; url = "https://go.googlesource.com/text"; - rev = "836efe42bb4aa16aaa17b9c155d8813d336ed720"; - sha256 = "11s7bjk0karl1lx8v4n6dvdnsh702x4f2qlmnqac2qdz8hdswmi1"; + rev = "1cbadb444a806fd9430d14ad08967ed91da4fa0a"; + sha256 = "0ih9ysagh4ylj08393497sscf3yziybc6acg4mrh0wa7mld75j56"; }; } { @@ -301,8 +301,8 @@ fetch = { type = "git"; url = "https://github.com/google/go-genproto"; - rev = "b0a3dcfcd1a9bd48e63634bd8802960804cf8315"; - sha256 = "0lkj73lyr4dzj2pxgmild0i1bl6kdgrxa3c8m44j5ms537pyxcpr"; + rev = "1e559d0a00eef8a9a43151db4665280bd8dd5886"; + sha256 = "1dfm8zd9mif1aswks79wgyi7n818s5brbdnnrrlg79whfhaf20hd"; }; } { @@ -310,8 +310,8 @@ fetch = { type = "git"; url = "https://github.com/grpc/grpc-go"; - rev = "2bb318258959db281674bc6fd67b5167b7ff0d65"; - sha256 = "1g8ir87ksr8549801vdgb0n6rmxws05ky50bkgjv86370h146cqm"; + rev = "f92cdcd7dcdc69e81b2d7b338479a19a8723cfa3"; + sha256 = "1li8rn2s4f8qc77npamlm2ijin44scb8vvd8c4cr0l7za2m89jfn"; }; } { diff --git a/pkgs/servers/dns/knot-dns/default.nix b/pkgs/servers/dns/knot-dns/default.nix index 1df36cd37c7b..cdbdf04f4454 100644 --- a/pkgs/servers/dns/knot-dns/default.nix +++ b/pkgs/servers/dns/knot-dns/default.nix @@ -7,11 +7,11 @@ let inherit (stdenv.lib) optional optionals; in # Note: ATM only the libraries have been tested in nixpkgs. stdenv.mkDerivation rec { name = "knot-dns-${version}"; - version = "2.5.3"; + version = "2.6.0"; src = fetchurl { url = "http://secure.nic.cz/files/knot-dns/knot-${version}.tar.xz"; - sha256 = "d78ae231a68ace264f5738c8e57481923bcad7413f3f440c06fa6cc0aded9d8e"; + sha256 = "68e04961d0bf6ba193cb7ec658b295c4ff6e60b3754d64bcd77ebdcee0f283fd"; }; outputs = [ "bin" "out" "dev" ]; diff --git a/pkgs/servers/emby/default.nix b/pkgs/servers/emby/default.nix index 5b749b92c037..ad4ed0a11adc 100644 --- a/pkgs/servers/emby/default.nix +++ b/pkgs/servers/emby/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "emby-${version}"; - version = "3.2.30.0"; + version = "3.2.33.0"; src = fetchurl { url = "https://github.com/MediaBrowser/Emby/releases/download/${version}/Emby.Mono.zip"; - sha256 = "1aqal7n4a9dvy97zw4aah9a8jm4l2v1qgjgs5kvskrvir2dbid27"; + sha256 = "1f8rcpbj6j46d46r6pmxvwz0mzxcjra47zx4ffvk8vi78m8kr56g"; }; buildInputs = with pkgs; [ diff --git a/pkgs/servers/http/nginx/mainline.nix b/pkgs/servers/http/nginx/mainline.nix index 64d0a9b79524..5ec0c7d4da5e 100644 --- a/pkgs/servers/http/nginx/mainline.nix +++ b/pkgs/servers/http/nginx/mainline.nix @@ -1,6 +1,6 @@ { callPackage, ... }@args: callPackage ./generic.nix (args // { - version = "1.13.4"; - sha256 = "1fpvy6738h951qks7wn6kdqwyprfsxirlxfq549n2p56kg2g68fy"; + version = "1.13.5"; + sha256 = "0blzna6h76xd7ddz37yb7yqg4yx7gpwsz8zbg8vlbxxk552bjx8f"; }) diff --git a/pkgs/servers/mail/dovecot/default.nix b/pkgs/servers/mail/dovecot/default.nix index 91b9ed972d8c..33da203c502d 100644 --- a/pkgs/servers/mail/dovecot/default.nix +++ b/pkgs/servers/mail/dovecot/default.nix @@ -8,7 +8,7 @@ }: stdenv.mkDerivation rec { - name = "dovecot-2.2.27"; + name = "dovecot-2.2.32"; nativeBuildInputs = [ perl pkgconfig ]; buildInputs = [ openssl bzip2 zlib clucene_core_2 icu openldap ] @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://dovecot.org/releases/2.2/${name}.tar.gz"; - sha256 = "1s8qvr6fa9d0n179kdwgpsi72zkvpbh9q57q8fr2fjysgjl94zw9"; + sha256 = "0bmwyvi1crmrca2knvknsf517x53w7gxrclwyrvrhddgw98j22qn"; }; preConfigure = '' diff --git a/pkgs/servers/mail/dovecot/plugins/pigeonhole/default.nix b/pkgs/servers/mail/dovecot/plugins/pigeonhole/default.nix index 385cf7d35ba8..3df0b41c2cab 100644 --- a/pkgs/servers/mail/dovecot/plugins/pigeonhole/default.nix +++ b/pkgs/servers/mail/dovecot/plugins/pigeonhole/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "dovecot-pigeonhole-${version}"; - version = "0.4.10"; + version = "0.4.20"; src = fetchurl { url = "http://pigeonhole.dovecot.org/releases/2.2/dovecot-2.2-pigeonhole-${version}.tar.gz"; - sha256 = "0vvjj1yjr189rn8f41z5rj8gfvk24a8j33q6spb6bd6k1wbfgpz9"; + sha256 = "0nxy007wmyamwj01yfiqbqjnbsd98z783b811rcavwi5iw5pvqbg"; }; buildInputs = [ dovecot openssl ]; diff --git a/pkgs/servers/mail/postfix/default.nix b/pkgs/servers/mail/postfix/default.nix index f3266046cb99..1bb9d83375a8 100644 --- a/pkgs/servers/mail/postfix/default.nix +++ b/pkgs/servers/mail/postfix/default.nix @@ -25,11 +25,11 @@ in stdenv.mkDerivation rec { name = "postfix-${version}"; - version = "3.1.3"; + version = "3.2.3"; src = fetchurl { url = "ftp://ftp.cs.uu.nl/mirror/postfix/postfix-release/official/${name}.tar.gz"; - sha256 = "0ya9h7ynhq8h7zgq0qkvfwx5rsam7i3vkbyh6rx63qlpcxz15y2j"; + sha256 = "1gs025smgynrlsg44cypjam99ds92mc9q46l5085d9sy0xfrf2sv"; }; buildInputs = [ makeWrapper gnused db openssl cyrus_sasl icu pcre ] diff --git a/pkgs/servers/monitoring/grafana/default.nix b/pkgs/servers/monitoring/grafana/default.nix index f2df0e4f9c3d..398e75f4fac5 100644 --- a/pkgs/servers/monitoring/grafana/default.nix +++ b/pkgs/servers/monitoring/grafana/default.nix @@ -1,7 +1,7 @@ { lib, buildGoPackage, fetchurl, fetchFromGitHub, phantomjs2 }: buildGoPackage rec { - version = "4.5.1"; + version = "4.5.2"; name = "grafana-v${version}"; goPackagePath = "github.com/grafana/grafana"; @@ -9,12 +9,12 @@ buildGoPackage rec { rev = "v${version}"; owner = "grafana"; repo = "grafana"; - sha256 = "0w4ldihs6j508ql7c0v2wsysrlf3n93iikvjwsszj6g5a4bz2f93"; + sha256 = "1sgrnk90hn99c1xq49al5n76j2qqfi7sjc6r2fr00gd7mxzbh1mg"; }; srcStatic = fetchurl { url = "https://s3-us-west-2.amazonaws.com/grafana-releases/release/grafana-${version}.linux-x64.tar.gz"; - sha256 = "0l96f03ghvadcba7yi22wsx16chff4ffjgnm2g3mcyigbhp57zk2"; + sha256 = "19l1abq8qklhsqq1z4mi08c9z139b8gfyay7pwp4xmjxfzpsff64"; }; preBuild = "export GOPATH=$GOPATH:$NIX_BUILD_TOP/go/src/${goPackagePath}/Godeps/_workspace"; diff --git a/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix b/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix index 27e6dea01ecc..6521408580df 100644 --- a/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "blackbox_exporter-${version}"; - version = "0.8.1"; + version = "0.9.1"; rev = version; goPackagePath = "github.com/prometheus/blackbox_exporter"; @@ -11,7 +11,7 @@ buildGoPackage rec { rev = "v${version}"; owner = "prometheus"; repo = "blackbox_exporter"; - sha256 = "1bnn1xa11593m66ihdnyka0ck8zmg4abvwdyy5fpnyx29g3ym4sd"; + sha256 = "03sc1h8jfxaw7c5d6lkj6x653zhxhh0v29n6db3319nsfx00nrag"; }; meta = with stdenv.lib; { diff --git a/pkgs/servers/monitoring/prometheus/default.nix b/pkgs/servers/monitoring/prometheus/default.nix index 8d5450127d65..08ee6b4e88a3 100644 --- a/pkgs/servers/monitoring/prometheus/default.nix +++ b/pkgs/servers/monitoring/prometheus/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "prometheus-${version}"; - version = "1.7.1"; + version = "1.7.2"; rev = "v${version}"; goPackagePath = "github.com/prometheus/prometheus"; @@ -11,7 +11,7 @@ buildGoPackage rec { inherit rev; owner = "prometheus"; repo = "prometheus"; - sha256 = "11acdwn2fw5qnyns5vdbxw18xnd2v4hb1y2cfjjxw478hhza4ni3"; + sha256 = "0a2qlcx4p6mwgff9hc2h3sm1glh6syb38jfxabsx2clmj0gq2dq1"; }; docheck = true; diff --git a/pkgs/servers/monitoring/telegraf/default.nix b/pkgs/servers/monitoring/telegraf/default.nix index b34fc6485319..8e11fe877c83 100644 --- a/pkgs/servers/monitoring/telegraf/default.nix +++ b/pkgs/servers/monitoring/telegraf/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "telegraf-${version}"; - version = "1.3.0"; + version = "1.4.1"; goPackagePath = "github.com/influxdata/telegraf"; @@ -12,9 +12,13 @@ buildGoPackage rec { owner = "influxdata"; repo = "telegraf"; rev = "${version}"; - sha256 = "0vcv4ylqzp4fvmpd3n5m0n2kxx39fcp9x62ny7cja4wraq36mdn0"; + sha256 = "1q0xl599zyqyralsl6mml1xl0h2206564sa2azivjmg48z7blcll"; }; + buildFlagsArray = [ ''-ldflags= + -X main.version=${version} + '' ]; + goDeps = ./. + builtins.toPath "/deps-${version}.nix"; meta = with lib; { diff --git a/pkgs/servers/monitoring/telegraf/deps-1.3.0.nix b/pkgs/servers/monitoring/telegraf/deps-1.4.1.nix index bb31a4966032..4391d58164f0 100644 --- a/pkgs/servers/monitoring/telegraf/deps-1.3.0.nix +++ b/pkgs/servers/monitoring/telegraf/deps-1.4.1.nix @@ -1,4 +1,4 @@ -# This file was generated by https://github.com/kamilchm/go2nix v1.2.0 +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 [ { goPackagePath = "collectd.org"; @@ -14,8 +14,8 @@ fetch = { type = "git"; url = "https://github.com/Shopify/sarama"; - rev = "574d3147eee384229bf96a5d12c207fe7b5234f3"; - sha256 = "02ckm91bngkrbvkf4j7s5swrjjv3dr9kn9glwyc15apjv2ynkc4j"; + rev = "c01858abb625b73a3af51d0798e4ad42c8147093"; + sha256 = "139fyfi2h6qas83kan0kpm9d92985nl1fyhijswy37d6ia86797w"; }; } { @@ -46,12 +46,21 @@ }; } { + goPackagePath = "github.com/apache/thrift"; + fetch = { + type = "git"; + url = "https://github.com/apache/thrift"; + rev = "4aaa92ece8503a6da9bc6701604f69acf2b99d07"; + sha256 = "1my582c0ln1byxid5acdd6dk7lvi7lwd6gka10s4bp4w3xrd55x8"; + }; + } + { goPackagePath = "github.com/aws/aws-sdk-go"; fetch = { type = "git"; url = "https://github.com/aws/aws-sdk-go"; - rev = "7524cb911daddd6e5c9195def8e59ae892bef8d9"; - sha256 = "0dm8zfv3jdrbnhm1yyq6507v5lzi6wwhrpwkdswhf0ihgc9ca90z"; + rev = "c861d27d0304a79f727e9a8a4e2ac1e74602fdc0"; + sha256 = "023cyg551dvm2l50dx1qsikkj77lk2dhiya7by8in7h65av6hjgl"; }; } { @@ -64,6 +73,15 @@ }; } { + goPackagePath = "github.com/bsm/sarama-cluster"; + fetch = { + type = "git"; + url = "https://github.com/bsm/sarama-cluster"; + rev = "ccdc0803695fbce22f1706d04ded46cd518fd832"; + sha256 = "1jbb03bygjzzs6wyxp6cp057kyiyv80schwlhgi366nizp52hd56"; + }; + } + { goPackagePath = "github.com/cenkalti/backoff"; fetch = { type = "git"; @@ -113,8 +131,17 @@ fetch = { type = "git"; url = "https://github.com/docker/docker"; - rev = "b89aff1afa1f61993ab2ba18fd62d9375a195f5d"; - sha256 = "1lkj1wmv4nfj3vrrdc072p5iib8p1l0y52mlg55p94b20v18ph2m"; + rev = "f5ec1e2936dcbe7b5001c2b817188b095c700c27"; + sha256 = "1y3rkzgg8vpjq61y473lnh0qyc6msl4ixw7ci2p56fyqrhkmhf96"; + }; + } + { + goPackagePath = "github.com/docker/go-connections"; + fetch = { + type = "git"; + url = "https://github.com/docker/go-connections"; + rev = "990a1a1a70b0da4c4cb70e117971a4f0babfbf1a"; + sha256 = "16lcf485a7gl0kzkc5n0qq9frjkfinxhcr3j4874qqkr8ghghwbb"; }; } { @@ -280,15 +307,6 @@ }; } { - goPackagePath = "github.com/klauspost/crc32"; - fetch = { - type = "git"; - url = "https://github.com/klauspost/crc32"; - rev = "cb6bfca970f6908083f26f39a79009d608efd5cd"; - sha256 = "0q4yr4isgmph1yf1vq527lpmid7vqv56q7vxh3gkp5679fb90q6n"; - }; - } - { goPackagePath = "github.com/matttproud/golang_protobuf_extensions"; fetch = { type = "git"; @@ -352,6 +370,24 @@ }; } { + goPackagePath = "github.com/opencontainers/runc"; + fetch = { + type = "git"; + url = "https://github.com/opencontainers/runc"; + rev = "89ab7f2ccc1e45ddf6485eaa802c35dcf321dfc8"; + sha256 = "1rnaqcsww7plr430r4ksv9si4l91l25li0bwa1b03g3sn2shirk1"; + }; + } + { + goPackagePath = "github.com/openzipkin/zipkin-go-opentracing"; + fetch = { + type = "git"; + url = "https://github.com/openzipkin/zipkin-go-opentracing"; + rev = "1cafbdfde94fbf2b373534764e0863aa3bd0bf7b"; + sha256 = "1vpl3mpvhljzpnll67ip3m9aazy3dvgi57n7w3pn8kg3b7kr4rwj"; + }; + } + { goPackagePath = "github.com/pierrec/lz4"; fetch = { type = "git"; @@ -370,6 +406,15 @@ }; } { + goPackagePath = "github.com/pkg/errors"; + fetch = { + type = "git"; + url = "https://github.com/pkg/errors"; + rev = "645ef00459ed84a119197bfb8d8205042c6df63d"; + sha256 = "001i6n71ghp2l6kdl3qq1v2vmghcz3kicv9a5wgcihrzigm75pp5"; + }; + } + { goPackagePath = "github.com/prometheus/client_golang"; fetch = { type = "git"; @@ -437,8 +482,8 @@ fetch = { type = "git"; url = "https://github.com/shirou/gopsutil"; - rev = "70693b6a3da51a8a686d31f1b346077bbc066062"; - sha256 = "0mrmwfpq8irqbmcqx64x7n1dw0qpl9kz4vbwm7c8bpfpjqmmni6b"; + rev = "9a4a9167ad3b4355dbf1c2c7a0f5f0d3fb1e9ab9"; + sha256 = "0pzvkszga4clj3nqlbs9g9rk7jxb8jdcszhscwgk1chqqwifhyxj"; }; } { @@ -541,12 +586,12 @@ }; } { - goPackagePath = "gopkg.in/dancannon/gorethink.v1"; + goPackagePath = "gopkg.in/asn1-ber.v1"; fetch = { type = "git"; - url = "https://gopkg.in/dancannon/gorethink.v1"; - rev = "edc7a6a68e2d8015f5ffe1b2560eed989f8a45be"; - sha256 = "0602082mfypdm98i963sdvij8l5ia5cw9r9cy7m6a60cvh1xmaka"; + url = "https://gopkg.in/asn1-ber.v1"; + rev = "4e86f4367175e39f69d9358a5f17b4dda270378d"; + sha256 = "13p8s74kzklb5lklfpxwxb78rknihawv1civ4s9bfqx565010fwk"; }; } { @@ -559,6 +604,24 @@ }; } { + goPackagePath = "gopkg.in/gorethink/gorethink.v3"; + fetch = { + type = "git"; + url = "https://gopkg.in/gorethink/gorethink.v3"; + rev = "7ab832f7b65573104a555d84a27992ae9ea1f659"; + sha256 = "1pri52ac45aqf5a2kmsd4mfhyfbkd1snkjbvanrdgipikysxi696"; + }; + } + { + goPackagePath = "gopkg.in/ldap.v2"; + fetch = { + type = "git"; + url = "https://gopkg.in/ldap.v2"; + rev = "8168ee085ee43257585e50c6441aadf54ecb2c9f"; + sha256 = "1w0993i8bl8sap01gwm1v6hjp0rsanj2mbpyabwcwnns2g79n895"; + }; + } + { goPackagePath = "gopkg.in/mgo.v2"; fetch = { type = "git"; @@ -572,8 +635,8 @@ fetch = { type = "git"; url = "https://gopkg.in/olivere/elastic.v5"; - rev = "ee3ebceab960cf68ab9a89ee6d78c031ef5b4a4e"; - sha256 = "0pby1b8s0h964cq6nld0arapkbfqb8vzm1k41cnxjq14ryh8adlh"; + rev = "3113f9b9ad37509fe5f8a0e5e91c96fdc4435e26"; + sha256 = "1zkwprs68q1r7pigb59n8zbw8610z9r1pi6r0s28kzdgiv30sfdm"; }; } { diff --git a/pkgs/servers/monitoring/uchiwa/bower-packages.nix b/pkgs/servers/monitoring/uchiwa/bower-packages.nix index 8a4e0e571b18..06144eedbf49 100644 --- a/pkgs/servers/monitoring/uchiwa/bower-packages.nix +++ b/pkgs/servers/monitoring/uchiwa/bower-packages.nix @@ -1,25 +1,25 @@ -# Generated by bower2nix v3.1.1 (https://github.com/rvl/bower2nix) +# Generated by bower2nix v3.2.0 (https://github.com/rvl/bower2nix) { fetchbower, buildEnv }: buildEnv { name = "bower-env"; ignoreCollisions = true; paths = [ - (fetchbower "uchiwa-web" "0.25.3" "0.25.3" "065qyrm1vyi8fp5d5b0b8q5nk8gwh0kcrckl2q1d30c6zlqshg0v") - (fetchbower "angular" "1.6.5" "~1.6.3" "0iy7crwr2akh6pmfslbnsrw8m91rffqjibjmzza78xmpk1f4hs73") - (fetchbower "angular-bootstrap" "2.2.0" "~2.2.0" "0zbimxmrmgbz60xg5rnkhv4gd0zvp5fdjdx5407r6a942irfy2x7") - (fetchbower "angular-cookies" "1.6.5" "~1.6.3" "135yipc576gl9svsk30q62mbf70yp9hy0mbsmvx4jrl9kais495p") - (fetchbower "angular-gravatar" "0.4.2" "~0.4.2" "19q40hsjhwz8y3phmyrrg27f20qpaknvw44cfx4gliin2zqwwsfk") - (fetchbower "angular-moment" "1.0.1" "~1.0.1" "1ydnilyf6nysxxjir51lhn92k7mjqii5277xxdqnpcvc376la244") - (fetchbower "angular-resource" "1.6.5" "~1.6.3" "02jiqnkn14kn69ybb74ajhaxxwh71fh5b1g67fajhirkiimpnmxy") - (fetchbower "angular-route" "1.6.5" "~1.6.3" "1n1q9a9khvqjas0jb277pzk44zjziblrflvh6w0s6im3ljcb6a7g") - (fetchbower "angular-sanitize" "1.6.5" "~1.6.3" "0jj56xwrlyslr3pi94xnbz7xy5g7pwg47p2pnbwhr1a1piwfzh87") - (fetchbower "angular-toastr" "1.6.0" "1.6.0" "1yksx3a4c3cva5liq087z4j196p0vxp1mzhbr27qr9wmyy6z84z1") - (fetchbower "angular-tools/ng-jsoneditor" "ea138469f157d8f2b54ec5b8dcf4b08a55b61459" "ea138469f157d8f2b54ec5b8dcf4b08a55b61459" "1rr7xf3a2l15g2nmd9svq8ijy1v0igc5jdpwp21kna1kzc65jg3m") - (fetchbower "angular-ua-parser" "0.0.2" "0.0.2" "0z24747b0sywjyzl5chcwr96mpmyr595bry63c4d35mp186ail5z") - (fetchbower "bootstrap" "3.1.1" "3.1.1" "036xbjpv4621p5r2l9vfm9zys6h1mhkvb0zhvk3irrmkzsl77hwh") - (fetchbower "bootstrap-sass-official" "3.1.1" "3.1.1" "0rfmja15p8kxz6i3liwyqrmbm82azq61d3882w2vmp08vvv2c371") - (fetchbower "fontawesome" "4.4.0" "~4.4.0" "1mbs0vhixvg11vj3n0l3jn3pb6s839rcs416zq2wzfqkbvsc3sf5") - (fetchbower "highlightjs" "9.1.0" "~9.1.0" "1gz4q922sylbbqw1sawmjjq8nw0mk90wq0qq95ap0f31px7bfm3f") - (fetchbower "moment" "2.16.0" "~2.16.0" "0g6zd465rnm3dhsank1iq9b5s4clc58lh3wrpg5sf8dd5zjlr2k2") - (fetchbower "moment-picker" "0.9.11" "~0.9.7" "0lw31180v0yjlcah17kpgklcllz78bnrdiyvwhw14151xcyds4jm") - (fetchbower "ua-parser-js" "0.7.14" "~0.7.12" "0z27b811xj09fh0gm72ah8425609gbj87jda3xap5l91alrwixz1") - (fetchbower "jsoneditor" "5.5.11" "~5.5.10" "05rcd98z6wc2x5kiaq9dfbvynbkwbrbrcgivcs8bv66d1k747ph8") - (fetchbower "jquery" "3.2.1" ">= 1.9.0" "1h14hjhi3ydnl66wmr8w72syyfcvbz47g7bprz7cqw5qxf2n7sah") + (fetchbower "uchiwa-web" "0.26.0" "0.26.0" "1ywbmay0pwm7rj4y0yqk6a3a62lv32ncshwy5j02rq5b2nf7lbc3") + (fetchbower "angular" "1.6.6" "~1.6.3" "1hc71mpipbdz6ban4zkagdhmn3rw28ksjkr6nwmbzfcpk59gnzkb") + (fetchbower "angular-bootstrap" "2.2.0" "~2.2.0" "11r2nlwp6xrim2y6lnrr8v064mx3bmlxchqpg1i803v9zxz3q53d") + (fetchbower "angular-cookies" "1.6.6" "~1.6.3" "0qfk0az32fmrn71ywjl63k7hgan0f0bb4d7fx7q5ch2kd75rzkfm") + (fetchbower "angular-gravatar" "0.4.2" "~0.4.2" "14jrzvjwx64awh9z95054manp8qd57fvinqhmakipz5x12i7qrwi") + (fetchbower "angular-moment" "1.0.1" "~1.0.1" "0zkn52s9l15d6b5zfx52g5jpib23rpb637m0p1hzc429w5bbl0rj") + (fetchbower "angular-resource" "1.6.6" "~1.6.3" "1fxd188qa16zbidr4kbwnw7gqcc0bjpvpa7xcmv22nbfk5akjz5b") + (fetchbower "angular-route" "1.6.6" "~1.6.3" "05saq9lb7xqhr1f4k2hdc2qlq0nacbgr36qsv7izvvmgh6irn1iq") + (fetchbower "angular-sanitize" "1.6.6" "~1.6.3" "1cikmvq456pvxdmrqw0dp04y3ar9n0nxrgv583m7cy6z228sx1hl") + (fetchbower "angular-toastr" "1.6.0" "1.6.0" "1szigf1m28bgpfyg8hbm5rffr5zi7wr9n73nc1fqhk0yqh7gzysh") + (fetchbower "angular-tools/ng-jsoneditor" "ea138469f157d8f2b54ec5b8dcf4b08a55b61459" "ea138469f157d8f2b54ec5b8dcf4b08a55b61459" "1j3vysr01niabc9fxcpixhcq1lyx2fr4q4wpmxhmiqki431h9hq8") + (fetchbower "angular-ua-parser" "0.0.2" "0.0.2" "0gb0vmwksnydlm6hklfq1n4ak2967wcmnx3cx9cgiv7v7vk3w2m9") + (fetchbower "bootstrap" "3.1.1" "3.1.1" "1a06mx1rw5h4wq89kqpa8g2pbiddm3p21dxq50jyi29sywd01ny4") + (fetchbower "bootstrap-sass-official" "3.1.1" "3.1.1" "1k6hhvsd75hdfrz8qcjzmb12c17fdn0h3l3l5k9wgd0rfhhfkyvd") + (fetchbower "fontawesome" "4.4.0" "~4.4.0" "09mrbik8i3skjwchn7ns2020bqmb51kbd3mqi59vh444s4az2sc7") + (fetchbower "highlightjs" "9.1.0" "~9.1.0" "0ld1da3h416a5j8v3v50rrpm4xwvvq8k8y2vwncvaqm9cqddz4s3") + (fetchbower "moment" "2.16.0" "~2.16.0" "1mji892i60f2aw3vhl6878acrcgh0ycn3r4af0ivnjf8az2b9n71") + (fetchbower "moment-picker" "0.9.11" "~0.9.7" "0p2g6rp2kcixydrga9lfihg4bxb598rvpi8n8l59mp549diy7vsb") + (fetchbower "ua-parser-js" "0.7.14" "~0.7.12" "0bpyfbaixz2dhkc19r7zgm61n4rncrvfyvj61c5kn6fmj68fdbz3") + (fetchbower "jsoneditor" "5.5.11" "~5.5.10" "1gfsf8jqnd3hb3r9s9246mg40iqxk2ix8k4bjnrsbfmg6cd3xw6x") + (fetchbower "jquery" "3.2.1" ">= 1.9.0" "03vn0kq07yxl3i5shc6b0mjck1vdbz1x0jspd3wwb169mvlsxxn3") ]; } diff --git a/pkgs/servers/monitoring/uchiwa/src.nix b/pkgs/servers/monitoring/uchiwa/src.nix index c0ddf9cb7a4a..4b14eea17ff8 100644 --- a/pkgs/servers/monitoring/uchiwa/src.nix +++ b/pkgs/servers/monitoring/uchiwa/src.nix @@ -1,4 +1,4 @@ { - version = "0.25.3-1"; - sha256 = "1sgr9fpjfx7qn7dbiaxhsw7iagcrqi39bjc0ba1lh1db5jh7ymks"; + version = "0.26.0-1"; + sha256 = "10f71wsv43jbbwvw3wicr8r1bml51smfakf4r10mi4zq1l37h77z"; } diff --git a/pkgs/servers/mpd/clientlib.nix b/pkgs/servers/mpd/clientlib.nix index a48ee83755b5..d9adc0f31029 100644 --- a/pkgs/servers/mpd/clientlib.nix +++ b/pkgs/servers/mpd/clientlib.nix @@ -1,24 +1,17 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, doxygen }: +{ stdenv, fetchFromGitHub, meson, ninja }: stdenv.mkDerivation rec { - version = "${passthru.majorVersion}.${passthru.minorVersion}"; + version = "2.13"; name = "libmpdclient-${version}"; src = fetchFromGitHub { owner = "MusicPlayerDaemon"; repo = "libmpdclient"; rev = "v${version}"; - sha256 = "06rv2j8rw9v9l4nwpvbh28nad8bbg368hzd8s58znbr5pgb8dihd"; + sha256 = "1g1n6rk8kn87mbjqxxj0vi7haj8xx21xmqlzbrx2fvyp5357zvsq"; }; - nativeBuildInputs = [ autoreconfHook doxygen ]; - - enableParallelBuilding = true; - - passthru = { - majorVersion = "2"; - minorVersion = "11"; - }; + nativeBuildInputs = [ meson ninja ]; meta = with stdenv.lib; { description = "Client library for MPD (music player daemon)"; diff --git a/pkgs/servers/mpd/default.nix b/pkgs/servers/mpd/default.nix index 63a781c59413..a323cd4802cf 100644 --- a/pkgs/servers/mpd/default.nix +++ b/pkgs/servers/mpd/default.nix @@ -34,7 +34,7 @@ let opt = stdenv.lib.optional; mkFlag = c: f: if c then "--enable-${f}" else "--disable-${f}"; major = "0.20"; - minor = "9"; + minor = "10"; in stdenv.mkDerivation rec { name = "mpd-${version}"; @@ -44,7 +44,7 @@ in stdenv.mkDerivation rec { owner = "MusicPlayerDaemon"; repo = "MPD"; rev = "v${version}"; - sha256 = "17ly30syrlw5274washifr0nddll3g1zb4rr4f9sfnlxz9wz73p1"; + sha256 = "0i170kfn68x683fsm5rba0zbpjfr1r7s6a8nvdbva2yl0aizfzhs"; }; patches = [ ./x86.patch ]; diff --git a/pkgs/servers/mqtt/mosquitto/default.nix b/pkgs/servers/mqtt/mosquitto/default.nix index b0e05aa8bc0a..c157064fcb2b 100644 --- a/pkgs/servers/mqtt/mosquitto/default.nix +++ b/pkgs/servers/mqtt/mosquitto/default.nix @@ -14,12 +14,12 @@ stdenv.mkDerivation rec { buildInputs = [ openssl libuuid libwebsockets c-ares libuv ] ++ stdenv.lib.optional stdenv.isDarwin cmake; - makeFlags = [ + makeFlags = stdenv.lib.optionals stdenv.isLinux [ "DESTDIR=$(out)" "PREFIX=" ]; - preBuild = '' + postPatch = '' substituteInPlace config.mk \ --replace "/usr/local" "" substituteInPlace config.mk \ diff --git a/pkgs/servers/nextcloud/default.nix b/pkgs/servers/nextcloud/default.nix index ffd2ad187961..ec4e78a54ece 100644 --- a/pkgs/servers/nextcloud/default.nix +++ b/pkgs/servers/nextcloud/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name= "nextcloud-${version}"; - version = "12.0.2"; + version = "12.0.3"; src = fetchurl { url = "https://download.nextcloud.com/server/releases/${name}.tar.bz2"; - sha256 = "0z5145xnwmmim5j25ylghhhm74nvijqb8iyq5azq9vjmkz5xcd7b"; + sha256 = "0wgvvpk7h7psy41a32f0ljh6iasjsqbf4pxi8nhybl46m35srg48"; }; installPhase = '' @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { meta = { description = "Sharing solution for files, calendars, contacts and more"; homepage = https://nextcloud.com; - maintainers = with stdenv.lib.maintainers; [ schneefux ]; + maintainers = with stdenv.lib.maintainers; [ schneefux bachp ]; license = stdenv.lib.licenses.agpl3Plus; platforms = with stdenv.lib.platforms; unix; }; diff --git a/pkgs/servers/plex/default.nix b/pkgs/servers/plex/default.nix index 37c5c6338251..317466897194 100644 --- a/pkgs/servers/plex/default.nix +++ b/pkgs/servers/plex/default.nix @@ -6,9 +6,9 @@ let plexPass = throw "Plex pass has been removed at upstream's request; please unset nixpkgs.config.plex.pass"; plexpkg = if enablePlexPass then plexPass else { - version = "1.9.1.4272"; - vsnHash = "b207937f1"; - sha256 = "e7e313700d994e9c406706cf5dbaab6974a998b5e7f556a014e66eaa4f9cf9c8"; + version = "1.9.2.4285"; + vsnHash = "9f65b88ae"; + sha256 = "0rz53kb4r32s734jhb3n65dcmb0mylhb6wcqinp0dg8w39ncv571"; }; in stdenv.mkDerivation rec { diff --git a/pkgs/servers/samba/3.x.nix b/pkgs/servers/samba/3.x.nix index 858f60b38853..91b1c8f95c1c 100644 --- a/pkgs/servers/samba/3.x.nix +++ b/pkgs/servers/samba/3.x.nix @@ -91,5 +91,8 @@ stdenv.mkDerivation rec { homepage = http://www.samba.org/; description = "The standard Windows interoperability suite of programs for Linux and Unix"; platforms = stdenv.lib.platforms.linux; + knownVulnerabilities = [ + "Numerous CVEs and no patches from upstream for 3.x since 2014." + ]; }; } diff --git a/pkgs/servers/samba/4.x.nix b/pkgs/servers/samba/4.x.nix index 1e1cc369136c..8adb90496c31 100644 --- a/pkgs/servers/samba/4.x.nix +++ b/pkgs/servers/samba/4.x.nix @@ -19,11 +19,11 @@ with lib; stdenv.mkDerivation rec { name = "samba-${version}"; - version = "4.6.7"; + version = "4.6.8"; src = fetchurl { url = "mirror://samba/pub/samba/stable/${name}.tar.gz"; - sha256 = "1ynxndfk45zkkylz3jsrx42a7kmm42jddk5bdhihyf88vs9l7wly"; + sha256 = "0pap686cl0j5c9v1v09krpqdk416x3851fbcap5ysp1zajrfw7aq"; }; outputs = [ "out" "dev" "man" ]; diff --git a/pkgs/servers/search/elasticsearch/5.x.nix b/pkgs/servers/search/elasticsearch/5.x.nix index cfa471f217ee..fb988b546308 100644 --- a/pkgs/servers/search/elasticsearch/5.x.nix +++ b/pkgs/servers/search/elasticsearch/5.x.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, elk5Version, makeWrapper, jre, utillinux, getopt }: +{ stdenv, fetchurl, elk5Version, makeWrapper, jre_headless, utillinux, getopt }: with stdenv.lib; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { patches = [ ./es-home-5.x.patch ./es-classpath-5.x.patch ]; - buildInputs = [ makeWrapper jre ] ++ + buildInputs = [ makeWrapper jre_headless ] ++ (if (!stdenv.isDarwin) then [utillinux] else [getopt]); installPhase = '' @@ -27,10 +27,10 @@ stdenv.mkDerivation rec { ${if (!stdenv.isDarwin) then ''--prefix PATH : "${utillinux}/bin/"'' else ''--prefix PATH : "${getopt}/bin"''} \ - --set JAVA_HOME "${jre}" \ + --set JAVA_HOME "${jre_headless}" \ --set ES_JVM_OPTIONS "$out/config/jvm.options" - wrapProgram $out/bin/elasticsearch-plugin --set JAVA_HOME "${jre}" + wrapProgram $out/bin/elasticsearch-plugin --set JAVA_HOME "${jre_headless}" ''; meta = { diff --git a/pkgs/servers/softether/4.20.nix b/pkgs/servers/softether/4.20.nix new file mode 100644 index 000000000000..c6ef5a3a4df2 --- /dev/null +++ b/pkgs/servers/softether/4.20.nix @@ -0,0 +1,53 @@ +{ stdenv, fetchurl +, openssl, readline, ncurses, zlib }: + +let + os = if stdenv.isLinux then "1" + else if stdenv.isFreeBSD then "2" + else if stdenv.isSunOS then "3" + else if stdenv.isDarwin then "4" + else if stdenv.isOpenBSD then "5" + else ""; + cpuBits = if stdenv.is64bit then "2" else "1"; + +in + +stdenv.mkDerivation rec { + name = "softether-${version}"; + version = "4.20"; + build = "9608"; + compiledDate = "2016.04.17"; + dataDir = "/var/lib/softether"; + + src = fetchurl { + url = "http://www.softether-download.com/files/softether/v${version}-${build}-rtm-${compiledDate}-tree/Source_Code/softether-src-v${version}-${build}-rtm.tar.gz"; + sha256 = "e559644e34ec6feba43d99f4083f77f9b082dd0574d0bb1e416a65f32ccbc51e"; + }; + + buildInputs = [ openssl readline ncurses zlib ]; + + preConfigure = '' + echo "${os} + ${cpuBits} + " | ./configure + rm configure + ''; + + buildPhase = '' + mkdir -p $out/bin + sed -i \ + -e "/INSTALL_BINDIR=/s|/usr/bin|/bin|g" \ + -e "/_DIR=/s|/usr|${dataDir}|g" \ + -e "s|\$(INSTALL|$out/\$(INSTALL|g" \ + -e "/echo/s|echo $out/|echo |g" \ + Makefile + ''; + + meta = with stdenv.lib; { + description = "An Open-Source Free Cross-platform Multi-protocol VPN Program"; + homepage = https://www.softether.org/; + license = licenses.gpl2; + maintainers = [ maintainers.rick68 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/servers/sql/mariadb/default.nix b/pkgs/servers/sql/mariadb/default.nix index 3ede229931eb..d6731a5b7dc3 100644 --- a/pkgs/servers/sql/mariadb/default.nix +++ b/pkgs/servers/sql/mariadb/default.nix @@ -15,11 +15,11 @@ mariadb = everything // { }; common = rec { # attributes common to both builds - version = "10.1.25"; + version = "10.1.28"; src = fetchurl { url = "https://downloads.mariadb.org/f/mariadb-${version}/source/mariadb-${version}.tar.gz/from/http%3A//ftp.hosteurope.de/mirror/archive.mariadb.org/?serve"; - sha256 = "1mm0n8sl6grajk5rbrx55333laz5dg2abyl8mlsn7h8vdymfq1bj"; + sha256 = "1g9b0c04qhgcgw6xw29bvdjjjacr7kn82crc7apvvi10ykzwhb99"; name = "mariadb-${version}.tar.gz"; }; diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix index 022ac15aee7b..8a3097ae9dee 100644 --- a/pkgs/servers/sql/postgresql/default.nix +++ b/pkgs/servers/sql/postgresql/default.nix @@ -11,7 +11,7 @@ let inherit sha256; }; - outputs = [ "out" "dev" "lib" "doc" "man" ]; + outputs = [ "out" "lib" "doc" "man" ]; setOutputFlags = false; # $out retains configureFlags :-/ buildInputs = @@ -51,11 +51,13 @@ let postInstall = '' - moveToOutput "bin/pg_config" "$dev" - moveToOutput "lib/pgxs" "$dev" # looks strange, but not deleting it + moveToOutput "lib/pgxs" "$out" # looks strange, but not deleting it moveToOutput "lib/*.a" "$out" moveToOutput "lib/libecpg*" "$out" + # Prevent a retained dependency on gcc-wrapper. + substituteInPlace "$out/lib/pgxs/src/Makefile.global" --replace ${stdenv.cc}/bin/ld ld + # Remove static libraries in case dynamic are available. for i in $out/lib/*.a; do name="$(basename "$i")" diff --git a/pkgs/servers/sql/postgresql/pgjwt/default.nix b/pkgs/servers/sql/postgresql/pgjwt/default.nix index b4955f8184c2..3e01d9bfe2ca 100644 --- a/pkgs/servers/sql/postgresql/pgjwt/default.nix +++ b/pkgs/servers/sql/postgresql/pgjwt/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { name = "pgjwt-${version}"; - version = "0.0.1"; + version = "unstable-2017-04-24"; src = fetchFromGitHub { owner = "michelp"; repo = "pgjwt"; - rev = "12a41eef15e6d3a22399e03178560d5174d496a3"; - sha256 = "1dgx7kqkf9d7j5qj3xykx238xm8jg0s6c8h7zyl4lx8dmbz9sgsv"; + rev = "546a2911027b716586e241be7fd4c6f1785237cd"; + sha256 = "1riz0xvwb6y02j0fljbr9hcbqb2jqs4njlivmavy9ysbcrrv1vrf"; }; dontBuild = true; installPhase = '' diff --git a/pkgs/servers/sql/postgresql/pgtap/default.nix b/pkgs/servers/sql/postgresql/pgtap/default.nix new file mode 100644 index 000000000000..b17446ca7786 --- /dev/null +++ b/pkgs/servers/sql/postgresql/pgtap/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchFromGitHub, postgresql, perl, perlPackages, which }: + +stdenv.mkDerivation rec { + name = "pgtap-${version}"; + version = "0.97.0"; + + src = fetchFromGitHub { + owner = "theory"; + repo = "pgtap"; + rev = "v${version}"; + sha256 = "1vzc8pxzi0rbywmrvx7i5awngsvzcz75i4jl9bk2vqr223chax6f"; + }; + + nativeBuildInputs = [ postgresql perl perlPackages.TAPParserSourceHandlerpgTAP which ]; + + installPhase = '' + install -D {sql/pgtap--${version}.sql,pgtap.control} -t $out/share/extension + ''; + + meta = with stdenv.lib; { + description = "pgTAP is a unit testing framework for PostgreSQL"; + longDescription = '' + pgTAP is a unit testing framework for PostgreSQL written in PL/pgSQL and PL/SQL. + It includes a comprehensive collection of TAP-emitting assertion functions, + as well as the ability to integrate with other TAP-emitting test frameworks. + It can also be used in the xUnit testing style. + ''; + maintainers = with maintainers; [ willibutz ]; + homepage = http://pgtap.org; + inherit (postgresql.meta) platforms; + }; +} diff --git a/pkgs/servers/sql/postgresql/timescaledb/default.nix b/pkgs/servers/sql/postgresql/timescaledb/default.nix new file mode 100644 index 000000000000..fbf0bfa19265 --- /dev/null +++ b/pkgs/servers/sql/postgresql/timescaledb/default.nix @@ -0,0 +1,36 @@ +{ stdenv, fetchFromGitHub, postgresql }: + +# # To enable on NixOS: +# config.services.postgresql = { +# extraPlugins = [ pkgs.timescaledb ]; +# extraConfig = "shared_preload_libraries = 'timescaledb'"; +# } + +stdenv.mkDerivation rec { + name = "timescaledb-${version}"; + version = "0.5.0"; + + buildInputs = [ postgresql ]; + + src = fetchFromGitHub { + owner = "timescale"; + repo = "timescaledb"; + rev = version; + sha256 = "01swgjw563c42azxsg55ry7cyiipxkcvfrxmw71jil5dxl3s0fkz"; + }; + + installPhase = '' + mkdir -p $out/bin + install -D timescaledb.so -t $out/lib + install -D timescaledb.control -t $out/share/extension + cp -dpR sql/* $out/share/extension/ + ''; + + meta = with stdenv.lib; { + description = "Scales PostgreSQL for time-series data via automatic partitioning across time and space"; + homepage = https://www.timescale.com/; + maintainers = with maintainers; [ volth ]; + platforms = platforms.linux; + license = licenses.postgresql; + }; +} diff --git a/pkgs/servers/udpt/default.nix b/pkgs/servers/udpt/default.nix index 97938de74a50..9e9816c941d9 100644 --- a/pkgs/servers/udpt/default.nix +++ b/pkgs/servers/udpt/default.nix @@ -1,8 +1,8 @@ -{ stdenv, fetchFromGitHub, boost, sqlite }: +{ stdenv, fetchFromGitHub, boost, sqlite, cmake, gtest }: stdenv.mkDerivation rec { name = "udpt-${version}"; - version = "2016-02-20"; # v2.0-rc0 with sample config + version = "2017-09-27"; enableParallelBuilding = true; @@ -12,11 +12,21 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "naim94a"; repo = "udpt"; - rev = "0790558de8b5bb841bb10a9115bbf72c3b4711b5"; - sha256 = "0rgkjwvnqwbnqy7pm3dk176d3plb5lypaf12533yr0yfzcp6gnzk"; + rev = "e0dffc83c8ce76b08a41a4abbd5f8065535d534f"; + sha256 = "187dw96mzgcmh4k9pvfpb7ckbb8d4vlikamr2x8vkpwzgjs3xd6g"; }; - buildInputs = [ boost sqlite ]; + doCheck = true; + + checkPhase = '' + runHook preCheck + + make test + + runHook postCheck + ''; + + buildInputs = [ boost sqlite cmake gtest ]; postPatch = '' # Enabling optimization (implied by fortify hardening) causes htons @@ -27,7 +37,7 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/bin $out/etc/ cp udpt $out/bin - cp udpt.conf $out/etc/ + cp ../udpt.conf $out/etc/ # without this, the resulting binary is unstripped. runHook postInstall ''; diff --git a/pkgs/shells/oh-my-zsh/default.nix b/pkgs/shells/oh-my-zsh/default.nix index 22f5aa48d610..8b8a67c2452a 100644 --- a/pkgs/shells/oh-my-zsh/default.nix +++ b/pkgs/shells/oh-my-zsh/default.nix @@ -4,13 +4,13 @@ { stdenv, fetchgit }: stdenv.mkDerivation rec { - version = "2017-06-22"; + version = "2017-09-24"; name = "oh-my-zsh-${version}"; src = fetchgit { url = "https://github.com/robbyrussell/oh-my-zsh"; - rev = "d848c94804918138375041a9f800f401bec12068"; - sha256 = "0mxmqkdpimwrskqjri3lp3haj1hzf583g7psnv34y3hyymzcx1h6"; + rev = "accdcb2f1c3cca40527fef1fe4ab2d39eb6cf897"; + sha256 = "0jrixz02mdab63yr0s16sr8gzwzhf9xnhad852swnfp3c7qlq06z"; }; pathsToLink = [ "/share/oh-my-zsh" ]; diff --git a/pkgs/tools/X11/sct/DISPLAY-segfault.patch b/pkgs/tools/X11/sct/DISPLAY-segfault.patch new file mode 100644 index 000000000000..6b83afa332ba --- /dev/null +++ b/pkgs/tools/X11/sct/DISPLAY-segfault.patch @@ -0,0 +1,10 @@ +--- a/sct.c 2017-09-22 00:44:20.270421881 +0000 ++++ b/sct.c 2017-09-26 10:50:38.964562740 +0000 +@@ -36,6 +36,7 @@ + main(int argc, char **argv) + { + Display *dpy = XOpenDisplay(NULL); ++ if (!dpy) exit(1); + int screen = DefaultScreen(dpy); + Window root = RootWindow(dpy, screen); + diff --git a/pkgs/tools/X11/sct/default.nix b/pkgs/tools/X11/sct/default.nix index 1890e9c5266b..9f45bbe30871 100644 --- a/pkgs/tools/X11/sct/default.nix +++ b/pkgs/tools/X11/sct/default.nix @@ -1,31 +1,26 @@ -{stdenv, fetchurl, libX11, libXrandr}: +{ stdenv, fetchurl, libX11, libXrandr }: + stdenv.mkDerivation rec { name = "sct"; - buildInputs = [libX11 libXrandr]; + src = fetchurl { url = http://www.tedunangst.com/flak/files/sct.c; sha256 = "01f3ndx3s6d2qh2xmbpmhd4962dyh8yp95l87xwrs4plqdz6knhd"; - - # Discussion regarding the checksum and the source code can be found in issue #17163 - # The code seems unmaintained, yet an unknown (probably small change) in the code caused - # failed builds as the checksum had changed. - # The checksum is updated for now, however, this is unpractical and potentially unsafe - # so any future changes might warrant a fork of the (feature complete) project. - # The code is under public domain. - }; - phases = ["patchPhase" "buildPhase" "installPhase"]; - patchPhase = '' - sed -re "/Xlibint/d" ${src} > sct.c - ''; - buildPhase = "gcc -std=c99 sct.c -o sct -lX11 -lXrandr -lm"; - installPhase = '' - mkdir -p "$out/bin" - cp sct "$out/bin" - ''; - meta = { - description = ''A minimal utility to set display colour temperature''; - maintainers = [stdenv.lib.maintainers.raskin]; - platforms = with stdenv.lib.platforms; linux ++ freebsd ++ openbsd; + + unpackPhase = "cat ${src} > sct.c"; + patches = [ ./DISPLAY-segfault.patch ]; + + buildInputs = [ libX11 libXrandr ]; + buildPhase = "cc sct.c -o sct -lm -lX11 -lXrandr"; + + installPhase = "install -Dt $out/bin sct"; + + meta = with stdenv.lib; { + homepage = https://www.tedunangst.com/flak/post/sct-set-color-temperature; + description = "A minimal utility to set display colour temperature"; + maintainers = [ maintainers.raskin ]; + license = licenses.publicDomain; + platforms = with platforms; linux ++ freebsd ++ openbsd; }; } diff --git a/pkgs/tools/X11/xwinwrap/default.nix b/pkgs/tools/X11/xwinwrap/default.nix new file mode 100644 index 000000000000..6ea24ad2c6aa --- /dev/null +++ b/pkgs/tools/X11/xwinwrap/default.nix @@ -0,0 +1,54 @@ +{ stdenv, fetchbzr, x11 }: + +let + version = "4"; +in +stdenv.mkDerivation { + name = "xwinwrap-${version}"; + + src = fetchbzr { + url = https://code.launchpad.net/~shantanu-goel/xwinwrap/devel; + rev = version; + sha256 = "1annhqc71jcgx5zvcy31c1c488ygx4q1ygrwyy2y0ww743smbchw"; + }; + + buildInputs = [ + x11 + ]; + + buildPhase = if stdenv.system == "x86_64-linux" then '' + make all64 + '' else if stdenv.system == "i686-linux" then '' + make all32 + '' else throw "xwinwrap is not supported on ${stdenv.system}"; + + installPhase = '' + mkdir -p $out/bin + mv */xwinwrap $out/bin + ''; + + meta = with stdenv.lib; { + description = "A utility that allows you to use an animated X window as the wallpaper"; + longDescription = '' + XWinWrap is a small utility written a loooong time ago that allowed you to + stick most of the apps to your desktop background. What this meant was you + could use an animated screensaver (like glmatrix, electric sheep, etc) or + even a movie, and use it as your wallpaper. But only one version of this + app was ever released, and it had a few problems, like: + + - Well, sticking didn’t work. So if you did a “minimize all” or “go to + desktop” kind of thing, your “wallpaper” got minimized as well. + + - The geometry option didn’t work, so you could not create, e.g., a small + matrix window surrounded by your original wallpaper. + + Seeing no-one picking it up, I decided to give it a bit of polish last + weekend by fixing the above problems and also add a few features. And here + it is, in its new avatar “Shantz XWinWrap”. + ''; + license = licenses.hpnd; + homepage = https://shantanugoel.com/2008/09/03/shantz-xwinwrap/; + maintainers = with maintainers; [ infinisil ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/tools/admin/fastlane/Gemfile b/pkgs/tools/admin/fastlane/Gemfile new file mode 100644 index 000000000000..1fa8dbca63b1 --- /dev/null +++ b/pkgs/tools/admin/fastlane/Gemfile @@ -0,0 +1,2 @@ +source 'https://rubygems.org' +gem 'fastlane' diff --git a/pkgs/tools/admin/fastlane/Gemfile.lock b/pkgs/tools/admin/fastlane/Gemfile.lock new file mode 100644 index 000000000000..5f15a9d0455c --- /dev/null +++ b/pkgs/tools/admin/fastlane/Gemfile.lock @@ -0,0 +1,139 @@ +GEM + remote: https://rubygems.org/ + specs: + CFPropertyList (2.3.5) + addressable (2.5.2) + public_suffix (>= 2.0.2, < 4.0) + babosa (1.0.2) + claide (1.0.2) + colored (1.2) + colored2 (3.1.2) + commander-fastlane (4.4.5) + highline (~> 1.7.2) + declarative (0.0.10) + declarative-option (0.1.0) + domain_name (0.5.20170404) + unf (>= 0.0.5, < 1.0.0) + dotenv (2.2.1) + excon (0.59.0) + faraday (0.13.1) + multipart-post (>= 1.2, < 3) + faraday-cookie_jar (0.0.6) + faraday (>= 0.7.4) + http-cookie (~> 1.0.0) + faraday_middleware (0.12.2) + faraday (>= 0.7.4, < 1.0) + fastimage (2.1.0) + fastlane (2.60.1) + CFPropertyList (>= 2.3, < 3.0.0) + addressable (>= 2.3, < 3.0.0) + babosa (>= 1.0.2, < 2.0.0) + bundler (>= 1.12.0, < 2.0.0) + colored + commander-fastlane (>= 4.4.5, < 5.0.0) + dotenv (>= 2.1.1, < 3.0.0) + excon (>= 0.45.0, < 1.0.0) + faraday (~> 0.9) + faraday-cookie_jar (~> 0.0.6) + faraday_middleware (~> 0.9) + fastimage (>= 2.1.0, < 3.0.0) + gh_inspector (>= 1.0.1, < 2.0.0) + google-api-client (>= 0.13.1, < 0.14.0) + highline (>= 1.7.2, < 2.0.0) + json (< 3.0.0) + mini_magick (~> 4.5.1) + multi_json + multi_xml (~> 0.5) + multipart-post (~> 2.0.0) + plist (>= 3.1.0, < 4.0.0) + public_suffix (~> 2.0.0) + rubyzip (>= 1.1.0, < 2.0.0) + security (= 0.1.3) + slack-notifier (>= 1.3, < 2.0.0) + terminal-notifier (>= 1.6.2, < 2.0.0) + terminal-table (>= 1.4.5, < 2.0.0) + tty-screen (~> 0.5.0) + word_wrap (~> 1.0.0) + xcodeproj (>= 1.5.0, < 2.0.0) + xcpretty (>= 0.2.4, < 1.0.0) + xcpretty-travis-formatter (>= 0.0.3) + gh_inspector (1.0.3) + google-api-client (0.13.6) + addressable (~> 2.5, >= 2.5.1) + googleauth (~> 0.5) + httpclient (>= 2.8.1, < 3.0) + mime-types (~> 3.0) + representable (~> 3.0) + retriable (>= 2.0, < 4.0) + googleauth (0.5.3) + faraday (~> 0.12) + jwt (~> 1.4) + logging (~> 2.0) + memoist (~> 0.12) + multi_json (~> 1.11) + os (~> 0.9) + signet (~> 0.7) + highline (1.7.8) + http-cookie (1.0.3) + domain_name (~> 0.5) + httpclient (2.8.3) + json (2.1.0) + jwt (1.5.6) + little-plugger (1.1.4) + logging (2.2.2) + little-plugger (~> 1.1) + multi_json (~> 1.10) + memoist (0.16.0) + mime-types (3.1) + mime-types-data (~> 3.2015) + mime-types-data (3.2016.0521) + mini_magick (4.5.1) + multi_json (1.12.2) + multi_xml (0.6.0) + multipart-post (2.0.0) + nanaimo (0.2.3) + os (0.9.6) + plist (3.3.0) + public_suffix (2.0.5) + representable (3.0.4) + declarative (< 0.1.0) + declarative-option (< 0.2.0) + uber (< 0.2.0) + retriable (3.1.1) + rouge (2.0.7) + rubyzip (1.2.1) + security (0.1.3) + signet (0.7.3) + addressable (~> 2.3) + faraday (~> 0.9) + jwt (~> 1.5) + multi_json (~> 1.10) + slack-notifier (1.5.1) + terminal-notifier (1.8.0) + terminal-table (1.8.0) + unicode-display_width (~> 1.1, >= 1.1.1) + tty-screen (0.5.0) + uber (0.1.0) + unf (0.1.4) + unf_ext + unf_ext (0.0.7.4) + unicode-display_width (1.3.0) + word_wrap (1.0.0) + xcodeproj (1.5.2) + CFPropertyList (~> 2.3.3) + claide (>= 1.0.2, < 2.0) + colored2 (~> 3.1) + nanaimo (~> 0.2.3) + xcpretty (0.2.8) + rouge (~> 2.0.7) + xcpretty-travis-formatter (0.0.4) + xcpretty (~> 0.2, >= 0.0.7) + +PLATFORMS + ruby + +DEPENDENCIES + fastlane + +BUNDLED WITH + 1.14.6 diff --git a/pkgs/tools/admin/fastlane/default.nix b/pkgs/tools/admin/fastlane/default.nix new file mode 100644 index 000000000000..b9008c919bf3 --- /dev/null +++ b/pkgs/tools/admin/fastlane/default.nix @@ -0,0 +1,17 @@ +{ lib, bundlerEnv, ruby }: + +bundlerEnv rec { + inherit ruby; + pname = "fastlane"; + gemdir = ./.; + + meta = with lib; { + description = "A tool to automate building and releasing iOS and Android apps"; + longDescription = "fastlane is a tool for iOS and Android developers to automate tedious tasks like generating screenshots, dealing with provisioning profiles, and releasing your application."; + homepage = https://github.com/fastlane/fastlane; + license = licenses.mit; + maintainers = with maintainers; [ + peterromfeldhk + ]; + }; +} diff --git a/pkgs/tools/admin/fastlane/gemset.nix b/pkgs/tools/admin/fastlane/gemset.nix new file mode 100644 index 000000000000..0d9c1f55835d --- /dev/null +++ b/pkgs/tools/admin/fastlane/gemset.nix @@ -0,0 +1,469 @@ +{ + addressable = { + dependencies = ["public_suffix"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0viqszpkggqi8hq87pqp0xykhvz60g99nwmkwsb0v45kc2liwxvk"; + type = "gem"; + }; + version = "2.5.2"; + }; + babosa = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "05rgxg4pz4bc4xk34w5grv0yp1j94wf571w84lf3xgqcbs42ip2f"; + type = "gem"; + }; + version = "1.0.2"; + }; + CFPropertyList = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "06dddgcai6nay552h8wmnb2m93xx5hni48s16vkbf9vbym4nfw5x"; + type = "gem"; + }; + version = "2.3.5"; + }; + claide = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0az54rp691hc42yl1xyix2cxv58byhaaf4gxbpghvvq29l476rzc"; + type = "gem"; + }; + version = "1.0.2"; + }; + colored = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0b0x5jmsyi0z69bm6sij1k89z7h0laag3cb4mdn7zkl9qmxb90lx"; + type = "gem"; + }; + version = "1.2"; + }; + colored2 = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0jlbqa9q4mvrm73aw9mxh23ygzbjiqwisl32d8szfb5fxvbjng5i"; + type = "gem"; + }; + version = "3.1.2"; + }; + commander-fastlane = { + dependencies = ["highline"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "04gpg733wv878acvrzp4kc3k934v10l3v8bcz3fjq5imjsrjdnbp"; + type = "gem"; + }; + version = "4.4.5"; + }; + declarative = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0642xvwzzbgi3kp1bg467wma4g3xqrrn0sk369hjam7w579gnv5j"; + type = "gem"; + }; + version = "0.0.10"; + }; + declarative-option = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1g4ibxq566f1frnhdymzi9hxxcm4g2gw4n21mpjk2mhwym4q6l0p"; + type = "gem"; + }; + version = "0.1.0"; + }; + domain_name = { + dependencies = ["unf"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "12hs8yijhak7p2hf1xkh98g0mnp5phq3mrrhywzaxpwz1gw5r3kf"; + type = "gem"; + }; + version = "0.5.20170404"; + }; + dotenv = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1pgzlvs0sswnqlgfm9gkz2hlhkc0zd3vnlp2vglb1wbgnx37pjjv"; + type = "gem"; + }; + version = "2.2.1"; + }; + excon = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0mnc9lqlzwqj5ayp0lh7impisqm55mdg3mw5q4gi9yjic5sidc40"; + type = "gem"; + }; + version = "0.59.0"; + }; + faraday = { + dependencies = ["multipart-post"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1gyqsj7vlqynwvivf9485zwmcj04v1z7gq362z0b8zw2zf4ag0hw"; + type = "gem"; + }; + version = "0.13.1"; + }; + faraday-cookie_jar = { + dependencies = ["faraday" "http-cookie"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1di4gx6446a6zdkrpj679m5k515i53wvb4yxcsqvy8d8zacxiiv6"; + type = "gem"; + }; + version = "0.0.6"; + }; + faraday_middleware = { + dependencies = ["faraday"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1p7icfl28nvl8qqdsngryz1snqic9l8x6bk0dxd7ygn230y0k41d"; + type = "gem"; + }; + version = "0.12.2"; + }; + fastimage = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1fh80nwjxm63phcdg55haz9q877fxgvnkazjihaqbf8ginn6g00v"; + type = "gem"; + }; + version = "2.1.0"; + }; + fastlane = { + dependencies = ["CFPropertyList" "addressable" "babosa" "colored" "commander-fastlane" "dotenv" "excon" "faraday" "faraday-cookie_jar" "faraday_middleware" "fastimage" "gh_inspector" "google-api-client" "highline" "json" "mini_magick" "multi_json" "multi_xml" "multipart-post" "plist" "public_suffix" "rubyzip" "security" "slack-notifier" "terminal-notifier" "terminal-table" "tty-screen" "word_wrap" "xcodeproj" "xcpretty" "xcpretty-travis-formatter"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1sg8xh1rjigiq438knkpdq685kyw34ki3h7baj65qh9mkkc8drxy"; + type = "gem"; + }; + version = "2.60.1"; + }; + gh_inspector = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1lxvp8xpjd2cazzcp90phy567spp4v41bnk9awgx8absndv70k1x"; + type = "gem"; + }; + version = "1.0.3"; + }; + google-api-client = { + dependencies = ["addressable" "googleauth" "httpclient" "mime-types" "representable" "retriable"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0ac9qa0kwnirkvwz2w9zf07lqcgbmnvgd1wg8xxyjbadwsbpyf1y"; + type = "gem"; + }; + version = "0.13.6"; + }; + googleauth = { + dependencies = ["faraday" "jwt" "logging" "memoist" "multi_json" "os" "signet"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1xpmvrzhczak25nm0k3r9aa083lmfnzi94mir3g1xyrgzz66vxli"; + type = "gem"; + }; + version = "0.5.3"; + }; + highline = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1nf5lgdn6ni2lpfdn4gk3gi47fmnca2bdirabbjbz1fk9w4p8lkr"; + type = "gem"; + }; + version = "1.7.8"; + }; + http-cookie = { + dependencies = ["domain_name"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "004cgs4xg5n6byjs7qld0xhsjq3n6ydfh897myr2mibvh6fjc49g"; + type = "gem"; + }; + version = "1.0.3"; + }; + httpclient = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "19mxmvghp7ki3klsxwrlwr431li7hm1lczhhj8z4qihl2acy8l99"; + type = "gem"; + }; + version = "2.8.3"; + }; + json = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "01v6jjpvh3gnq6sgllpfqahlgxzj50ailwhj9b3cd20hi2dx0vxp"; + type = "gem"; + }; + version = "2.1.0"; + }; + jwt = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "124zz1142bi2if7hl5pcrcamwchv4icyr5kaal9m2q6wqbdl6aw4"; + type = "gem"; + }; + version = "1.5.6"; + }; + little-plugger = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1frilv82dyxnlg8k1jhrvyd73l6k17mxc5vwxx080r4x1p04gwym"; + type = "gem"; + }; + version = "1.1.4"; + }; + logging = { + dependencies = ["little-plugger" "multi_json"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "06j6iaj89h9jhkx1x3hlswqrfnqds8br05xb1qra69dpvbdmjcwn"; + type = "gem"; + }; + version = "2.2.2"; + }; + memoist = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0pq8fhqh8w25qcw9v3vzfb0i6jp0k3949ahxc3wrwz2791dpbgbh"; + type = "gem"; + }; + version = "0.16.0"; + }; + mime-types = { + dependencies = ["mime-types-data"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0087z9kbnlqhci7fxh9f6il63hj1k02icq2rs0c6cppmqchr753m"; + type = "gem"; + }; + version = "3.1"; + }; + mime-types-data = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "04my3746hwa4yvbx1ranhfaqkgf6vavi1kyijjnw8w3dy37vqhkm"; + type = "gem"; + }; + version = "3.2016.0521"; + }; + mini_magick = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1a59k5l29vj060yscaqk370rg5vyr132kbw6x3zar7khzjqjqd8p"; + type = "gem"; + }; + version = "4.5.1"; + }; + multi_json = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1raim9ddjh672m32psaa9niw67ywzjbxbdb8iijx3wv9k5b0pk2x"; + type = "gem"; + }; + version = "1.12.2"; + }; + multi_xml = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0lmd4f401mvravi1i1yq7b2qjjli0yq7dfc4p1nj5nwajp7r6hyj"; + type = "gem"; + }; + version = "0.6.0"; + }; + multipart-post = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "09k0b3cybqilk1gwrwwain95rdypixb2q9w65gd44gfzsd84xi1x"; + type = "gem"; + }; + version = "2.0.0"; + }; + nanaimo = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0z6rbji02x75vm5jw4hbpp75khp4z5yfgbaz1h9l8aa00hqf0fxd"; + type = "gem"; + }; + version = "0.2.3"; + }; + os = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1llv8w3g2jwggdxr5a5cjkrnbbfnvai3vxacxxc0fy84xmz3hymz"; + type = "gem"; + }; + version = "0.9.6"; + }; + plist = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0k0pyqrjcz9kn1b3ahsfs9aqym7s7yzz0vavya0zn0mca3jw2zqc"; + type = "gem"; + }; + version = "3.3.0"; + }; + public_suffix = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "040jf98jpp6w140ghkhw2hvc1qx41zvywx5gj7r2ylr1148qnj7q"; + type = "gem"; + }; + version = "2.0.5"; + }; + representable = { + dependencies = ["declarative" "declarative-option" "uber"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0qm9rgi1j5a6nv726ka4mmixivlxfsg91h8rpp72wwd4vqbkkm07"; + type = "gem"; + }; + version = "3.0.4"; + }; + retriable = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0pnriyn9zh120hxm92vb12hfsf7c98nawyims1shxj3ldpl0l3ar"; + type = "gem"; + }; + version = "3.1.1"; + }; + rouge = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0sfikq1q8xyqqx690iiz7ybhzx87am4w50w8f2nq36l3asw4x89d"; + type = "gem"; + }; + version = "2.0.7"; + }; + rubyzip = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "06js4gznzgh8ac2ldvmjcmg9v1vg9llm357yckkpylaj6z456zqz"; + type = "gem"; + }; + version = "1.2.1"; + }; + security = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1ryjxs0j66wrbky2c08yf0mllwalvpg12rpxzbdx2rdhj3cbrlxa"; + type = "gem"; + }; + version = "0.1.3"; + }; + signet = { + dependencies = ["addressable" "faraday" "jwt" "multi_json"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "149668991xqibvm8kvl10kzy891yd6f994b4gwlx6c3vl24v5jq6"; + type = "gem"; + }; + version = "0.7.3"; + }; + slack-notifier = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0xavibxh00gy62mm79l6id9l2fldjmdqifk8alqfqy5z38ffwah6"; + type = "gem"; + }; + version = "1.5.1"; + }; + terminal-notifier = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0vy75sbq236v1p83jj6r3a9d52za5lqj2vj24np9lrszdczm9zcb"; + type = "gem"; + }; + version = "1.8.0"; + }; + terminal-table = { + dependencies = ["unicode-display_width"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1512cngw35hsmhvw4c05rscihc59mnj09m249sm9p3pik831ydqk"; + type = "gem"; + }; + version = "1.8.0"; + }; + tty-screen = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "005rpl9l1r9i7wypb4kv057y01fxqvanznx62msx6z451cfjsfn3"; + type = "gem"; + }; + version = "0.5.0"; + }; + uber = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1p1mm7mngg40x05z52md3mbamkng0zpajbzqjjwmsyw0zw3v9vjv"; + type = "gem"; + }; + version = "0.1.0"; + }; + unf = { + dependencies = ["unf_ext"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0bh2cf73i2ffh4fcpdn9ir4mhq8zi50ik0zqa1braahzadx536a9"; + type = "gem"; + }; + version = "0.1.4"; + }; + unf_ext = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "14hr2dzqh33kqc0xchs8l05pf3kjcayvad4z1ip5rdjxrkfk8glb"; + type = "gem"; + }; + version = "0.0.7.4"; + }; + unicode-display_width = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "12pi0gwqdnbx1lv5136v3vyr0img9wr0kxcn4wn54ipq4y41zxq8"; + type = "gem"; + }; + version = "1.3.0"; + }; + word_wrap = { + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1iyc5bc7dbgsd8j3yk1i99ral39f23l6wapi0083fbl19hid8mpm"; + type = "gem"; + }; + version = "1.0.0"; + }; + xcodeproj = { + dependencies = ["CFPropertyList" "claide" "colored2" "nanaimo"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0v40167wxhjfczjqp7axvblivrzgbmqldaj9vb15pw45qh6xly51"; + type = "gem"; + }; + version = "1.5.2"; + }; + xcpretty = { + dependencies = ["rouge"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1b8x9m53a1hbw0lamffjm4m1ydigj3azl97jc5w7prv1bm27s2y3"; + type = "gem"; + }; + version = "0.2.8"; + }; + xcpretty-travis-formatter = { + dependencies = ["xcpretty"]; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1wn5pcxja1jkc8y5b6s3pks5inc1vmjkq7fqmlbkl39z8l1vdis2"; + type = "gem"; + }; + version = "0.0.4"; + }; +} \ No newline at end of file diff --git a/pkgs/tools/archivers/unrar/default.nix b/pkgs/tools/archivers/unrar/default.nix index a1454229a1c8..563b21c76d8d 100644 --- a/pkgs/tools/archivers/unrar/default.nix +++ b/pkgs/tools/archivers/unrar/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "unrar-${version}"; - version = "5.5.5"; + version = "5.5.7"; src = fetchurl { url = "http://www.rarlab.com/rar/unrarsrc-${version}.tar.gz"; - sha256 = "1vv1s1pa0pf1r0h7dw89ha9y68x7hdm82csnkh6ms0igrcwkhmd4"; + sha256 = "13rd69ss6jqsa6yxr8kmgs84kb67k822d2mbiz29m75zj46hmvwa"; }; postPatch = '' diff --git a/pkgs/tools/backup/duplicity/default.nix b/pkgs/tools/backup/duplicity/default.nix index 313167b1ae27..d55783f7f2ce 100644 --- a/pkgs/tools/backup/duplicity/default.nix +++ b/pkgs/tools/backup/duplicity/default.nix @@ -11,7 +11,7 @@ python2Packages.buildPythonApplication rec { buildInputs = [ librsync makeWrapper python2Packages.wrapPython ]; propagatedBuildInputs = with python2Packages; [ - boto cffi cryptography ecdsa enum idna + boto cffi cryptography ecdsa enum idna pygobject3 ipaddress lockfile paramiko pyasn1 pycrypto six ]; checkInputs = with python2Packages; [ lockfile mock pexpect ]; diff --git a/pkgs/tools/cd-dvd/xorriso/default.nix b/pkgs/tools/cd-dvd/xorriso/default.nix index b91a59006e94..8f2577c43442 100644 --- a/pkgs/tools/cd-dvd/xorriso/default.nix +++ b/pkgs/tools/cd-dvd/xorriso/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, libcdio, zlib, bzip2, readline, acl, attr }: +{ fetchurl, stdenv, libcdio, zlib, bzip2, readline, acl, attr, libiconv }: stdenv.mkDerivation rec { name = "xorriso-1.4.8"; @@ -10,8 +10,8 @@ stdenv.mkDerivation rec { doCheck = true; - buildInputs = [ libcdio zlib bzip2 readline attr ] - ++ stdenv.lib.optional stdenv.isLinux acl; + buildInputs = [ libcdio zlib bzip2 readline libiconv ] + ++ stdenv.lib.optionals stdenv.isLinux [ acl attr ]; meta = with stdenv.lib; { description = "ISO 9660 Rock Ridge file system manipulator"; diff --git a/pkgs/tools/filesystems/gcsfuse/default.nix b/pkgs/tools/filesystems/gcsfuse/default.nix index 086f0e0f790c..215f02ccdd4e 100644 --- a/pkgs/tools/filesystems/gcsfuse/default.nix +++ b/pkgs/tools/filesystems/gcsfuse/default.nix @@ -3,15 +3,15 @@ buildGoPackage rec { name = "gcsfuse-${version}"; - version = "v0.19.0"; - rev = "81281027c0093e3f916a6e611a128ec5c3a12ece"; + version = "0.23.0"; + rev = "v${version}"; goPackagePath = "github.com/googlecloudplatform/gcsfuse"; src = fetchgit { inherit rev; url = "https://github.com/googlecloudplatform/gcsfuse"; - sha256 = "1lj9czippsgkhr8y3r7vwxgc8i952v76v1shdv10p43gsxwyyi9a"; + sha256 = "1qxbpsmz22l5w4b7wbgfdq4v85cfc9ka9i8h4c56nals1x5lcsnx"; }; meta = { diff --git a/pkgs/tools/filesystems/glusterfs/default.nix b/pkgs/tools/filesystems/glusterfs/default.nix index 0bdb7413f22d..dc15866f3cda 100644 --- a/pkgs/tools/filesystems/glusterfs/default.nix +++ b/pkgs/tools/filesystems/glusterfs/default.nix @@ -15,10 +15,10 @@ let # The command # find /nix/store/...-glusterfs-.../ -name '*.py' -executable # can help with finding new Python scripts. - version = "3.10.2"; + version = "3.12.1"; name="${baseName}-${version}"; url="https://github.com/gluster/glusterfs/archive/v${version}.tar.gz"; - sha256 = "09hpvw42sc77nc3bfv7395wjn7fxvp0n8qnmrlyxq83hf0w81gfs"; + sha256 = "14l6p2zyjsrnjvf0lipq32p517zk813nqv06pjq6kcqkmy038wdv"; }; buildInputs = [ fuse bison flex_2_5_35 openssl ncurses readline @@ -71,7 +71,6 @@ rec { patches = [ ./glusterfs-use-PATH-instead-of-hardcodes.patch - ./glusterfs-fix-unsubstituted-autoconf-macros.patch ./glusterfs-python-remove-find_library.patch # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1489610 is fixed ./glusterfs-fix-bug-1489610-glusterfind-var-data-under-prefix.patch diff --git a/pkgs/tools/filesystems/glusterfs/glusterfs-fix-bug-1489610-glusterfind-var-data-under-prefix.patch b/pkgs/tools/filesystems/glusterfs/glusterfs-fix-bug-1489610-glusterfind-var-data-under-prefix.patch index 8a3da0d6db76..f679fb8f4c1b 100644 --- a/pkgs/tools/filesystems/glusterfs/glusterfs-fix-bug-1489610-glusterfind-var-data-under-prefix.patch +++ b/pkgs/tools/filesystems/glusterfs/glusterfs-fix-bug-1489610-glusterfind-var-data-under-prefix.patch @@ -1,27 +1,27 @@ -From 965eb1e08e10ff82bb91d485dc24672acc7c72cf Mon Sep 17 00:00:00 2001 +From f523afac49e24ecc0fa4ad85195135689cf445f0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me> -Date: Fri, 8 Sep 2017 00:51:53 +0200 +Date: Wed, 27 Sep 2017 21:36:41 +0200 Subject: [PATCH] Fix "glusterfind saves var data under $prefix instead of localstatedir". Fixes #1489610 -Change-Id: I6d71297fb7a5a9d12cc3726b4a4ad94efcd644f9 +Change-Id: Id2362c20f34346c37acfb9eb1ad105d0b7b8b60f --- configure.ac | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/configure.ac b/configure.ac -index 0c3a38689..d508fda71 100644 +index f87d8a454..b4d3f5d10 100644 --- a/configure.ac +++ b/configure.ac -@@ -1057,7 +1057,7 @@ if test "x$prefix" = xNONE; then - prefix=$ac_default_prefix +@@ -1118,7 +1118,7 @@ if test "x$exec_prefix" = xNONE; then + exec_prefix="$(eval echo $prefix)" fi - GLUSTERFS_LIBEXECDIR="$(eval echo $prefix)/libexec/glusterfs" + GLUSTERFS_LIBEXECDIR="$(eval echo $libexecdir)/glusterfs" -GLUSTERFSD_MISCDIR="$(eval echo $prefix)/var/lib/misc/glusterfsd" +GLUSTERFSD_MISCDIR="$(eval echo $localstatedir)/var/lib/misc/glusterfsd" prefix=$old_prefix + exec_prefix=$old_exec_prefix - ### Dirty hacky stuff to make LOCALSTATEDIR work -- 2.12.0 diff --git a/pkgs/tools/filesystems/glusterfs/glusterfs-fix-unsubstituted-autoconf-macros.patch b/pkgs/tools/filesystems/glusterfs/glusterfs-fix-unsubstituted-autoconf-macros.patch deleted file mode 100644 index de3c2fa9f62e..000000000000 --- a/pkgs/tools/filesystems/glusterfs/glusterfs-fix-unsubstituted-autoconf-macros.patch +++ /dev/null @@ -1,236 +0,0 @@ -From b37e0222a6a60505868a6fbb8591608cdc4bba57 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me> -Date: Sat, 13 May 2017 15:33:27 +0200 -Subject: [PATCH] Revert "build/packaging: Debian and Ubuntu don't have - /usr/libexec". Fixes #1450588 - -This reverts commit 18509e436f8a728ef522f3e76e2f2dc30e1bd8ac. - -This fixes autoconf unsubstituted strings to appear in generated source code. ---- - cli/src/Makefile.am | 2 +- - configure.ac | 12 ++++++------ - events/src/Makefile.am | 8 ++++---- - extras/Makefile.am | 2 +- - geo-replication/src/Makefile.am | 8 ++++---- - geo-replication/syncdaemon/Makefile.am | 2 +- - tools/gfind_missing_files/Makefile.am | 4 ++-- - tools/glusterfind/Makefile.am | 4 ++-- - tools/glusterfind/src/Makefile.am | 2 +- - xlators/features/ganesha/src/Makefile.am | 2 +- - xlators/mgmt/glusterd/src/Makefile.am | 2 +- - 11 files changed, 24 insertions(+), 24 deletions(-) - -diff --git a/cli/src/Makefile.am b/cli/src/Makefile.am -index 5ef9389..f5b8d00 100644 ---- a/cli/src/Makefile.am -+++ b/cli/src/Makefile.am -@@ -18,7 +18,7 @@ AM_CPPFLAGS = $(GF_CPPFLAGS) \ - -I$(top_builddir)/rpc/xdr/src\ - -DDATADIR=\"$(localstatedir)\" \ - -DCONFDIR=\"$(sysconfdir)/glusterfs\" \ -- -DGSYNCD_PREFIX=\"$(GLUSTERFS_LIBEXECDIR)\"\ -+ -DGSYNCD_PREFIX=\"$(libexecdir)/glusterfs\"\ - -DSYNCDAEMON_COMPILE=$(SYNCDAEMON_COMPILE) -DSBIN_DIR=\"$(sbindir)\"\ - $(XML_CPPFLAGS) - -diff --git a/configure.ac b/configure.ac -index c9742e2..0c3a386 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -1056,24 +1056,24 @@ old_prefix=$prefix - if test "x$prefix" = xNONE; then - prefix=$ac_default_prefix - fi --GLUSTERFS_LIBEXECDIR="$libexecdir/glusterfs" --GLUSTERFSD_MISCDIR="$prefix/var/lib/misc/glusterfsd" -+GLUSTERFS_LIBEXECDIR="$(eval echo $prefix)/libexec/glusterfs" -+GLUSTERFSD_MISCDIR="$(eval echo $prefix)/var/lib/misc/glusterfsd" - prefix=$old_prefix - - ### Dirty hacky stuff to make LOCALSTATEDIR work - if test "x$prefix" = xNONE; then -- test $localstatedir = '$prefix/var' && localstatedir=$ac_default_prefix/var -+ test $localstatedir = '${prefix}/var' && localstatedir=$ac_default_prefix/var - localstatedir=/var -- LOCALSTATEDIR=$localstatedir -+ LOCALSTATEDIR=$(eval echo ${localstatedir}) - else -- LOCALSTATEDIR=$localstatedir -+ LOCALSTATEDIR=$(eval echo ${localstatedir}) - fi - - old_prefix=$prefix - if test "x$prefix" = xNONE; then - prefix=$ac_default_prefix - fi --GLUSTERD_VOLFILE="$sysconfdir/glusterfs/glusterd.vol" -+GLUSTERD_VOLFILE="$(eval echo ${sysconfdir})/glusterfs/glusterd.vol" - prefix=$old_prefix - - -diff --git a/events/src/Makefile.am b/events/src/Makefile.am -index 8493abd..87282c6 100644 ---- a/events/src/Makefile.am -+++ b/events/src/Makefile.am -@@ -5,7 +5,7 @@ EXTRA_DIST = glustereventsd.py __init__.py eventsapiconf.py.in \ - BUILT_SOURCES = eventtypes.py - CLEANFILES = eventtypes.py - --eventsdir = $(GLUSTERFS_LIBEXECDIR)/events -+eventsdir = $(libexecdir)/glusterfs/events - events_PYTHON = __init__.py gf_event.py eventsapiconf.py eventtypes.py \ - utils.py - -@@ -13,7 +13,7 @@ eventtypes.py: $(top_srcdir)/events/eventskeygen.py - $(PYTHON) $(top_srcdir)/events/eventskeygen.py PY_HEADER - - if BUILD_EVENTS --eventspeerscriptdir = $(GLUSTERFS_LIBEXECDIR) -+eventspeerscriptdir = $(libexecdir)/glusterfs - eventsconfdir = $(sysconfdir)/glusterfs - eventsconf_DATA = eventsconfig.json - -@@ -24,10 +24,10 @@ eventspeerscript_SCRIPTS = peer_eventsapi.py - install-exec-hook: - $(mkdir_p) $(DESTDIR)$(sbindir) - rm -f $(DESTDIR)$(sbindir)/glustereventsd -- ln -s $(GLUSTERFS_LIBEXECDIR)/events/glustereventsd.py \ -+ ln -s $(libexecdir)/glusterfs/events/glustereventsd.py \ - $(DESTDIR)$(sbindir)/glustereventsd - rm -f $(DESTDIR)$(sbindir)/gluster-eventsapi -- ln -s $(GLUSTERFS_LIBEXECDIR)/peer_eventsapi.py \ -+ ln -s $(libexecdir)/glusterfs/peer_eventsapi.py \ - $(DESTDIR)$(sbindir)/gluster-eventsapi - - uninstall-hook: -diff --git a/extras/Makefile.am b/extras/Makefile.am -index 9dfc93d..53ac476 100644 ---- a/extras/Makefile.am -+++ b/extras/Makefile.am -@@ -1,4 +1,4 @@ --addonexecdir = $(GLUSTERFS_LIBEXECDIR) -+addonexecdir = $(libexecdir)/glusterfs - addonexec_SCRIPTS = peer_add_secret_pub - - EditorModedir = $(docdir) -diff --git a/geo-replication/src/Makefile.am b/geo-replication/src/Makefile.am -index 9937a0b..87435d5 100644 ---- a/geo-replication/src/Makefile.am -+++ b/geo-replication/src/Makefile.am -@@ -1,4 +1,4 @@ --gsyncddir = $(GLUSTERFS_LIBEXECDIR) -+gsyncddir = $(libexecdir)/glusterfs - - gsyncd_SCRIPTS = gverify.sh peer_gsec_create \ - set_geo_rep_pem_keys.sh peer_mountbroker peer_mountbroker.py \ -@@ -21,7 +21,7 @@ noinst_HEADERS = procdiggy.h - - AM_CPPFLAGS = $(GF_CPPFLAGS) -I$(top_srcdir)/libglusterfs/src \ - -I$(top_srcdir)/rpc/xdr/src -I$(top_builddir)/rpc/xdr/src \ -- -DGSYNCD_PREFIX=\"$(GLUSTERFS_LIBEXECDIR)\" -DUSE_LIBGLUSTERFS \ -+ -DGSYNCD_PREFIX=\"$(libexecdir)/glusterfs\" -DUSE_LIBGLUSTERFS \ - -DSBIN_DIR=\"$(sbindir)\" -DPYTHON=\"$(PYTHON)\" - - AM_CFLAGS = -Wall $(GF_CFLAGS) -@@ -35,11 +35,11 @@ $(top_builddir)/libglusterfs/src/libglusterfs.la: - install-exec-hook: - $(mkdir_p) $(DESTDIR)$(sbindir) - rm -f $(DESTDIR)$(sbindir)/gluster-mountbroker -- ln -s $(GLUSTERFS_LIBEXECDIR)/peer_mountbroker.py \ -+ ln -s $(libexecdir)/glusterfs/peer_mountbroker.py \ - $(DESTDIR)$(sbindir)/gluster-mountbroker - - rm -f $(DESTDIR)$(sbindir)/gluster-georep-sshkey -- ln -s $(GLUSTERFS_LIBEXECDIR)/peer_georep-sshkey.py \ -+ ln -s $(libexecdir)/glusterfs/peer_georep-sshkey.py \ - $(DESTDIR)$(sbindir)/gluster-georep-sshkey - - -diff --git a/geo-replication/syncdaemon/Makefile.am b/geo-replication/syncdaemon/Makefile.am -index f80fb26..7cdaf45 100644 ---- a/geo-replication/syncdaemon/Makefile.am -+++ b/geo-replication/syncdaemon/Makefile.am -@@ -1,4 +1,4 @@ --syncdaemondir = $(GLUSTERFS_LIBEXECDIR)/python/syncdaemon -+syncdaemondir = $(libexecdir)/glusterfs/python/syncdaemon - - syncdaemon_PYTHON = gconf.py gsyncd.py __init__.py master.py README.md repce.py \ - resource.py configinterface.py syncdutils.py monitor.py libcxattr.py \ -diff --git a/tools/gfind_missing_files/Makefile.am b/tools/gfind_missing_files/Makefile.am -index f77f789..043c34c 100644 ---- a/tools/gfind_missing_files/Makefile.am -+++ b/tools/gfind_missing_files/Makefile.am -@@ -1,4 +1,4 @@ --gfindmissingfilesdir = $(GLUSTERFS_LIBEXECDIR)/gfind_missing_files -+gfindmissingfilesdir = $(libexecdir)/glusterfs/gfind_missing_files - - gfindmissingfiles_SCRIPTS = gfind_missing_files.sh gfid_to_path.sh \ - gfid_to_path.py -@@ -21,6 +21,6 @@ uninstall-local: - - install-data-local: - rm -f $(DESTDIR)$(sbindir)/gfind_missing_files -- ln -s $(GLUSTERFS_LIBEXECDIR)/gfind_missing_files/gfind_missing_files.sh $(DESTDIR)$(sbindir)/gfind_missing_files -+ ln -s $(libexecdir)/glusterfs/gfind_missing_files/gfind_missing_files.sh $(DESTDIR)$(sbindir)/gfind_missing_files - - CLEANFILES = -diff --git a/tools/glusterfind/Makefile.am b/tools/glusterfind/Makefile.am -index 92fa614..37f23be 100644 ---- a/tools/glusterfind/Makefile.am -+++ b/tools/glusterfind/Makefile.am -@@ -6,7 +6,7 @@ bin_SCRIPTS = glusterfind - - CLEANFILES = $(bin_SCRIPTS) - --deletehookscriptsdir = $(GLUSTERFS_LIBEXECDIR)/glusterfind/ -+deletehookscriptsdir = $(libexecdir)/glusterfs/glusterfind/ - deletehookscripts_SCRIPTS = S57glusterfind-delete-post.py - - uninstall-local: -@@ -16,5 +16,5 @@ install-data-local: - $(mkdir_p) $(DESTDIR)$(GLUSTERD_WORKDIR)/glusterfind/.keys - $(mkdir_p) $(DESTDIR)$(GLUSTERD_WORKDIR)/hooks/1/delete/post/ - rm -f $(DESTDIR)$(GLUSTERD_WORKDIR)/hooks/1/delete/post/S57glusterfind-delete-post -- ln -s $(GLUSTERFS_LIBEXECDIR)/glusterfind/S57glusterfind-delete-post.py \ -+ ln -s $(libexecdir)/glusterfs/glusterfind/S57glusterfind-delete-post.py \ - $(DESTDIR)$(GLUSTERD_WORKDIR)/hooks/1/delete/post/S57glusterfind-delete-post -diff --git a/tools/glusterfind/src/Makefile.am b/tools/glusterfind/src/Makefile.am -index e4469c1..541ff94 100644 ---- a/tools/glusterfind/src/Makefile.am -+++ b/tools/glusterfind/src/Makefile.am -@@ -1,4 +1,4 @@ --glusterfinddir = $(GLUSTERFS_LIBEXECDIR)/glusterfind -+glusterfinddir = $(libexecdir)/glusterfs/glusterfind - - glusterfind_PYTHON = conf.py utils.py __init__.py \ - main.py libgfchangelog.py changelogdata.py -diff --git a/xlators/features/ganesha/src/Makefile.am b/xlators/features/ganesha/src/Makefile.am -index 78715d6..54cfcb3 100644 ---- a/xlators/features/ganesha/src/Makefile.am -+++ b/xlators/features/ganesha/src/Makefile.am -@@ -12,7 +12,7 @@ AM_CPPFLAGS = $(GF_CPPFLAGS) -I$(top_srcdir)/libglusterfs/src \ - -fPIC -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D$(GF_HOST_OS)\ - -I$(top_srcdir)/rpc/xdr/src -I$(top_builddir)/rpc/xdr/src \ - -DGANESHA_DIR=\"$(sysconfdir)/ganesha\" \ -- -DGYSNCD_PREFIX=\"$(GLUSTERFS_LIBEXECDIR)\" -+ -DGYSNCD_PREFIX=\"$(libexecdir)/glusterfs\" - - AM_CFLAGS = -Wall $(GF_CFLAGS) - -diff --git a/xlators/mgmt/glusterd/src/Makefile.am b/xlators/mgmt/glusterd/src/Makefile.am -index 23ebf37..4f2fffd 100644 ---- a/xlators/mgmt/glusterd/src/Makefile.am -+++ b/xlators/mgmt/glusterd/src/Makefile.am -@@ -47,7 +47,7 @@ AM_CPPFLAGS = $(GF_CPPFLAGS) -I$(top_srcdir)/libglusterfs/src \ - -I$(CONTRIBDIR)/rbtree -I$(top_srcdir)/rpc/rpc-lib/src \ - -I$(CONTRIBDIR)/mount -I$(CONTRIBDIR)/userspace-rcu \ - -DSBIN_DIR=\"$(sbindir)\" -DDATADIR=\"$(localstatedir)\" \ -- -DGSYNCD_PREFIX=\"$(GLUSTERFS_LIBEXECDIR)\" \ -+ -DGSYNCD_PREFIX=\"$(libexecdir)/glusterfs\" \ - -DCONFDIR=\"$(localstatedir)/run/gluster/shared_storage/nfs-ganesha\" \ - -DGANESHA_PREFIX=\"$(libexecdir)/ganesha\" \ - -DSYNCDAEMON_COMPILE=$(SYNCDAEMON_COMPILE) $(XML_CPPFLAGS) --- -2.7.4 - diff --git a/pkgs/tools/filesystems/glusterfs/glusterfs-use-PATH-instead-of-hardcodes.patch b/pkgs/tools/filesystems/glusterfs/glusterfs-use-PATH-instead-of-hardcodes.patch index eb4bd5b7d56f..acb15464e48f 100644 --- a/pkgs/tools/filesystems/glusterfs/glusterfs-use-PATH-instead-of-hardcodes.patch +++ b/pkgs/tools/filesystems/glusterfs/glusterfs-use-PATH-instead-of-hardcodes.patch @@ -41,29 +41,6 @@ index e9f80fe81..6380dd867 100644 progname, strerror (errno)); #endif /* GF_LINUX_HOST_OS */ exit (1); -diff --git a/xlators/mgmt/glusterd/src/glusterd-ganesha.c b/xlators/mgmt/glusterd/src/glusterd-ganesha.c -index da1fee066..dcb9e5725 100644 ---- a/xlators/mgmt/glusterd/src/glusterd-ganesha.c -+++ b/xlators/mgmt/glusterd/src/glusterd-ganesha.c -@@ -122,15 +122,15 @@ manage_service (char *action) - int i = 0; - int ret = 0; - struct service_command sc_list[] = { -- { .binary = "/bin/systemctl", -+ { .binary = "systemctl", - .service = "nfs-ganesha", - .action = sc_systemctl_action - }, -- { .binary = "/sbin/invoke-rc.d", -+ { .binary = "invoke-rc.d", - .service = "nfs-ganesha", - .action = sc_service_action - }, -- { .binary = "/sbin/service", -+ { .binary = "service", - .service = "nfs-ganesha", - .action = sc_service_action - }, diff --git a/xlators/mgmt/glusterd/src/glusterd-quota.c b/xlators/mgmt/glusterd/src/glusterd-quota.c index 0e6629cf0..fcb4738b7 100644 --- a/xlators/mgmt/glusterd/src/glusterd-quota.c diff --git a/pkgs/tools/graphics/gnuplot/default.nix b/pkgs/tools/graphics/gnuplot/default.nix index 6100573153ba..10170b41bbe4 100644 --- a/pkgs/tools/graphics/gnuplot/default.nix +++ b/pkgs/tools/graphics/gnuplot/default.nix @@ -21,11 +21,11 @@ let withX = libX11 != null && !aquaterm && !stdenv.isDarwin; in stdenv.mkDerivation rec { - name = "gnuplot-5.0.6"; + name = "gnuplot-5.2.0"; src = fetchurl { url = "mirror://sourceforge/gnuplot/${name}.tar.gz"; - sha256 = "0q5lr6nala3ln6f3yp6g17ziymb9r9gx9zylnw1y3hjmwl9lggjv"; + sha256 = "0hqyajcnlk822fk7hyl07sqk6a75n93awbdl3ydk9fd6l4jn9zkx"; }; buildInputs = diff --git a/pkgs/tools/inputmethods/fcitx-engines/fcitx-rime/default.nix b/pkgs/tools/inputmethods/fcitx-engines/fcitx-rime/default.nix new file mode 100644 index 000000000000..e9e2e29f7fad --- /dev/null +++ b/pkgs/tools/inputmethods/fcitx-engines/fcitx-rime/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchurl, cmake, pkgconfig, fcitx, librime, brise, hicolor_icon_theme }: + +stdenv.mkDerivation rec { + name = "fcitx-rime-${version}"; + version = "0.3.2"; + + src = fetchurl { + url = "https://download.fcitx-im.org/fcitx-rime/${name}.tar.xz"; + sha256 = "0bd8snfa6jr8dhnm0s0z021iryh5pbaf7p15rhkgbigw2pssczpr"; + }; + + buildInputs = [ cmake pkgconfig fcitx librime brise hicolor_icon_theme ]; + + # cmake cannont automatically find our nonstandard brise install location + cmakeFlags = [ "-DRIME_DATA_DIR=${brise}/share/rime-data" ]; + + preInstall = '' + substituteInPlace src/cmake_install.cmake \ + --replace ${fcitx} $out + substituteInPlace data/cmake_install.cmake \ + --replace ${fcitx} $out + ''; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + isFcitxEngine = true; + homepage = https://github.com/fcitx/fcitx-rime; + downloadPage = https://download.fcitx-im.org/fcitx-rime/; + description = "Rime support for Fcitx"; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ sifmelcara ]; + }; +} diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-anthy/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-anthy/default.nix index f93edffa7bde..53b2a3abf28e 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-anthy/default.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-anthy/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--with-anthy-zipcode=${anthy}/share/anthy/zipcode.t" ]; buildInputs = [ - anthy glib gobjectIntrospection gtk3 ibus python3 + anthy glib gobjectIntrospection gtk3 ibus (python3.withPackages (ps: [ps.pygobject3])) ]; nativeBuildInputs = [ intltool pkgconfig python3.pkgs.wrapPython ]; diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix index 74253fa09fc0..f70c7d02e9f0 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "120p9w7za6hi521hz8q235fkl4i3p1qqr8nqm4a3kxr0pcq40bd2"; }; - buildInputs = [ gtk3 ibus libhangul ]; + buildInputs = [ gtk3 ibus libhangul python3 ]; nativeBuildInputs = [ intltool pkgconfig python3.pkgs.wrapPython ]; diff --git a/pkgs/tools/inputmethods/ibus/default.nix b/pkgs/tools/inputmethods/ibus/default.nix index 66d61b8c5e9d..69ac0ad3ef68 100644 --- a/pkgs/tools/inputmethods/ibus/default.nix +++ b/pkgs/tools/inputmethods/ibus/default.nix @@ -50,6 +50,12 @@ let }; pyEnv = python3.buildEnv.override { extraLibs = [ python3.pkgs.pygobject3 ]; + + # ImportError: No module named site + postBuild = '' + makeWrapper '${glib.dev}/bin/glib-genmarshal' "$out"/bin/glib-genmarshal \ + --unset PYTHONPATH + ''; }; in stdenv.mkDerivation rec { name = "ibus-${version}"; @@ -110,6 +116,10 @@ in stdenv.mkDerivation rec { doInstallCheck = true; installCheckPhase = "$out/bin/ibus version"; + postInstall = '' + moveToOutput "bin/ibus-setup" "$dev" + ''; + meta = with stdenv.lib; { homepage = https://github.com/ibus/ibus; description = "Intelligent Input Bus for Linux / Unix OS"; diff --git a/pkgs/tools/inputmethods/ibus/wrapper.nix b/pkgs/tools/inputmethods/ibus/wrapper.nix index 13035698827f..d41ba1e791f9 100644 --- a/pkgs/tools/inputmethods/ibus/wrapper.nix +++ b/pkgs/tools/inputmethods/ibus/wrapper.nix @@ -21,7 +21,7 @@ let done done - for prog in ibus ibus-setup; do + for prog in ibus; do wrapProgram "$out/bin/$prog" \ --set GDK_PIXBUF_MODULE_FILE ${librsvg.out}/lib/gdk-pixbuf-2.0/2.10.0/loaders.cache \ --prefix GI_TYPELIB_PATH : "$GI_TYPELIB_PATH:$out/lib/girepository-1.0" \ diff --git a/pkgs/tools/misc/bonfire/default.nix b/pkgs/tools/misc/bonfire/default.nix new file mode 100644 index 000000000000..7937a212951f --- /dev/null +++ b/pkgs/tools/misc/bonfire/default.nix @@ -0,0 +1,44 @@ +{ stdenv, python3Packages, fetchFromGitHub }: + +with python3Packages; + +buildPythonApplication rec { + version = "2017-01-19"; + pname = "bonfire"; + name = "${pname}-unstable-${version}"; + + # use latest git version with --endpoint flag + # https://github.com/blue-yonder/bonfire/pull/18 + src = fetchFromGitHub { + owner = "blue-yonder"; + repo = "${pname}"; + rev = "d0af9ca10394f366cfa3c60f0741f1f0918011c2"; + sha256 = "193zcvzbhxwwkwbgmnlihhhazwkajycxf4r71jz1m12w301sjhq5"; + }; + + postPatch = '' + # https://github.com/blue-yonder/bonfire/pull/24 + substituteInPlace requirements.txt \ + --replace "arrow>=0.5.4,<0.8" "arrow>=0.5.4,<0.11" \ + --replace "keyring>=9,<10" "keyring>=9,<11" + # pip fails when encountering the git hash for the package version + substituteInPlace setup.py \ + --replace "version=version," "version='${version}'," + # remove extraneous files + substituteInPlace setup.cfg \ + --replace "data_files = *.rst, *.txt" "" + ''; + + buildInputs = [ httpretty pytest pytestcov ]; + + propagatedBuildInputs = [ arrow click keyring parsedatetime requests six termcolor ]; + + meta = with stdenv.lib; { + homepage = https://pypi.python.org/pypi/bonfire; + description = "CLI Graylog Client with Follow Mode"; + license = licenses.bsd3; + maintainers = [ maintainers.womfoo ]; + platforms = platforms.linux; + }; + +} diff --git a/pkgs/tools/misc/cloud-utils/default.nix b/pkgs/tools/misc/cloud-utils/default.nix index af518e7efa98..9894813d9556 100644 --- a/pkgs/tools/misc/cloud-utils/default.nix +++ b/pkgs/tools/misc/cloud-utils/default.nix @@ -1,27 +1,34 @@ -{ stdenv, fetchurl, makeWrapper, gawk, gnused, utillinux }: +{ stdenv, fetchurl, makeWrapper +, gawk, gnused, utillinux, file +, wget, python3, qemu, euca2ools +, e2fsprogs, cdrkit }: -stdenv.mkDerivation { +stdenv.mkDerivation rec { # NOTICE: if you bump this, make sure to run # $ nix-build nixos/release-combined.nix -A nixos.tests.ec2-nixops - name = "cloud-utils-0.29"; + # growpart is needed in initrd in nixos/modules/virtualisation/grow-partition.nix + name = "cloud-utils-${version}"; + version = "0.30"; src = fetchurl { - url = "https://launchpad.net/cloud-utils/trunk/0.29/+download/cloud-utils-0.29.tar.gz"; - sha256 = "0z15gs8gmpy5gqxl7yiyjj7a6s8iw44djj6axvbci627b9pvd8cy"; + url = "https://launchpad.net/cloud-utils/trunk/0.3/+download/cloud-utils-${version}.tar.gz"; + sha256 = "19ca9ckwwsvlqrjz19bc93rq4gv3y4ak7551li2qk95caqyxsq3k"; }; - buildInputs = [ makeWrapper ]; - buildPhase = '' - mkdir -p $out/bin - cp bin/growpart $out/bin/growpart - sed -i 's|awk|gawk|' $out/bin/growpart - sed -i 's|sed|gnused|' $out/bin/growpart - ln -s sed $out/bin/gnused - wrapProgram $out/bin/growpart --prefix PATH : "${stdenv.lib.makeBinPath [ gnused gawk utillinux ]}:$out/bin" + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ python3 ]; + installFlags = [ "LIBDIR=$(out)/lib" "BINDIR=$(out)/bin" "MANDIR=$(out)/man/man1" "DOCDIR=$(out)/doc" ]; + + # according to https://packages.ubuntu.com/source/zesty/cloud-utils + binDeps = [ + wget e2fsprogs file gnused gawk utillinux qemu euca2ools cdrkit + ]; + + postFixup = '' + for i in $out/bin/*; do + wrapProgram $i --prefix PATH : "${stdenv.lib.makeBinPath binDeps}:$out/bin" + done ''; - dontInstall = true; - dontPatchShebangs = true; - dontStrip = true; - meta = { - platforms = stdenv.lib.platforms.unix; - }; + dontBuild = true; + + meta.platforms = stdenv.lib.platforms.unix; } diff --git a/pkgs/tools/misc/cloud-utils/growpart-util-linux-2.26.patch b/pkgs/tools/misc/cloud-utils/growpart-util-linux-2.26.patch deleted file mode 100644 index c782c2d7e4bd..000000000000 --- a/pkgs/tools/misc/cloud-utils/growpart-util-linux-2.26.patch +++ /dev/null @@ -1,88 +0,0 @@ -From 1895d10a7539d055a4e0206af1e7a9e5ea32a4f7 Mon Sep 17 00:00:00 2001 -From: Juerg Haefliger <juerg.haefliger@hp.com> -Date: Wed, 25 Mar 2015 13:59:20 +0100 -Subject: [PATCH] Support new sfdisk version 2.26 - -The sfdisk usage with version 2.26 changed. Specifically, the option ---show-pt-geometry and functionality for CHS have been removed. -Also, restoring a backup MBR now needs to be done using dd. ---- - bin/growpart | 28 ++++++++++------------------ - 1 file changed, 10 insertions(+), 18 deletions(-) - -diff --git a/bin/growpart b/bin/growpart -index 595c40b..d4c995b 100755 ---- a/bin/growpart -+++ b/bin/growpart -@@ -28,7 +28,6 @@ PART="" - PT_UPDATE=false - DRY_RUN=0 - --MBR_CHS="" - MBR_BACKUP="" - GPT_BACKUP="" - _capture="" -@@ -133,7 +132,8 @@ bad_Usage() { - } - - mbr_restore() { -- sfdisk --no-reread "${DISK}" ${MBR_CHS} -I "${MBR_BACKUP}" -+ dd if="${MBR_BACKUP}-${DISK#/dev/}-0x00000000.bak" of="${DISK}" bs=1 \ -+ conv=notrunc - } - - sfdisk_worked_but_blkrrpart_failed() { -@@ -148,34 +148,26 @@ sfdisk_worked_but_blkrrpart_failed() { - - mbr_resize() { - RESTORE_HUMAN="${TEMP_D}/recovery" -- MBR_BACKUP="${TEMP_D}/orig.save" -+ MBR_BACKUP="${TEMP_D}/backup" - - local change_out=${TEMP_D}/change.out - local dump_out=${TEMP_D}/dump.out - local new_out=${TEMP_D}/new.out - local dump_mod=${TEMP_D}/dump.mod -- local tmp="${TEMP_D}/tmp.out" -- local err="${TEMP_D}/err.out" - -- local _devc cyl _w1 heads _w2 sectors _w3 tot dpart -+ local tot dpart - local pt_start pt_size pt_end max_end new_size change_info - -- # --show-pt-geometry outputs something like -- # /dev/sda: 164352 cylinders, 4 heads, 32 sectors/track -- rqe sfd_geom sfdisk "${DISK}" --show-pt-geometry >"${tmp}" && -- read _devc cyl _w1 heads _w2 sectors _w3 <"${tmp}" && -- MBR_CHS="-C ${cyl} -H ${heads} -S ${sectors}" || -- fail "failed to get CHS from ${DISK}" -+ tot=$(sfdisk --list "${DISK}" | awk '{ print $(NF-1) ; exit }') || -+ fail "failed to get total number of sectors from ${DISK}" - -- tot=$((${cyl}*${heads}*${sectors})) -+ debug 1 "total number of sectors of ${DISK} is ${tot}" - -- debug 1 "geometry is ${MBR_CHS}. total size=${tot}" -- rqe sfd_dump sfdisk ${MBR_CHS} --unit=S --dump "${DISK}" \ -+ rqe sfd_dump sfdisk --dump "${DISK}" \ - >"${dump_out}" || - fail "failed to dump sfdisk info for ${DISK}" -- - { -- echo "## sfdisk ${MBR_CHS} --unit=S --dump ${DISK}" -+ echo "## sfdisk --dump ${DISK}" - cat "${dump_out}" - } >"${RESTORE_HUMAN}" - [ $? -eq 0 ] || fail "failed to save sfdisk -d output" -@@ -237,7 +229,7 @@ mbr_resize() { - exit 0 - fi - -- LANG=C sfdisk --no-reread "${DISK}" ${MBR_CHS} --force \ -+ LANG=C sfdisk --no-reread "${DISK}" --force \ - -O "${MBR_BACKUP}" <"${new_out}" >"${change_out}" 2>&1 - ret=$? - [ $ret -eq 0 ] || RESTORE_FUNC="mbr_restore" --- -2.1.4 - diff --git a/pkgs/tools/misc/entr/default.nix b/pkgs/tools/misc/entr/default.nix index 582e01c6f2fe..d37655134c55 100644 --- a/pkgs/tools/misc/entr/default.nix +++ b/pkgs/tools/misc/entr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "entr-${version}"; - version = "3.8"; + version = "3.9"; src = fetchurl { url = "http://entrproject.org/code/${name}.tar.gz"; - sha256 = "1g969gw92q8pd3zfbx37w14l92xd3nzi24083x47dns8v69ygcgb"; + sha256 = "0xk8y8asy0wxi5jx03c521p9919gjr8053lxpfzn83jkmqc8zmq2"; }; postPatch = '' diff --git a/pkgs/tools/misc/exa/default.nix b/pkgs/tools/misc/exa/default.nix index 110125727bf0..488f7482b154 100644 --- a/pkgs/tools/misc/exa/default.nix +++ b/pkgs/tools/misc/exa/default.nix @@ -2,34 +2,17 @@ with rustPlatform; -let - # check for updates - zoneinfo_compiled = fetchFromGitHub { - owner = "rust-datetime"; - repo = "zoneinfo-compiled"; - rev = "f56921ea5e9f7cf065b1480ff270a1757c1f742f"; - sha256 = "1xmw7c5f5n45lkxnyxp4llfv1bnqhc876w98165ccdbbiylfkw26"; - }; - cargoPatch = '' - # use non-git dependencies - patch Cargo.toml <<EOF - 46c46 - < git = "https://github.com/rust-datetime/zoneinfo-compiled.git" - --- - > path = "${zoneinfo_compiled}" - EOF - ''; -in buildRustPackage rec { +buildRustPackage rec { name = "exa-${version}"; - version = "0.7.0"; + version = "0.8.0"; - depsSha256 = "0j320hhf2vqaha137pjj4pyiw6d3p5h3nhy3pl9vna1g5mnl1sn7"; + depsSha256 = "0yz41prkjs5rmvdhr9k58a52l7hvwy5mfg8rcpsq4ybgf601lja2"; src = fetchFromGitHub { owner = "ogham"; repo = "exa"; rev = "v${version}"; - sha256 = "0i9psgna2wwv9qyw9cif4qznqiyi16vl763hpm2yr195aj700339"; + sha256 = "0jy11a3xfnfnmyw1kjmv4ffavhijs8c940kw24vafklnacx5n88m"; }; nativeBuildInputs = [ cmake pkgconfig perl ]; @@ -38,15 +21,6 @@ in buildRustPackage rec { # Some tests fail, but Travis ensures a proper build doCheck = false; - cargoUpdateHook = '' - ${cargoPatch} - ''; - cargoDepsHook = '' - pushd $sourceRoot - ${cargoPatch} - popd - ''; - meta = with stdenv.lib; { description = "Replacement for 'ls' written in Rust"; longDescription = '' @@ -57,7 +31,7 @@ in buildRustPackage rec { for a directory, or recursing into directories with a tree view. exa is written in Rust, so it’s small, fast, and portable. ''; - homepage = http://the.exa.website; + homepage = https://the.exa.website; license = licenses.mit; maintainer = [ maintainers.ehegnes ]; }; diff --git a/pkgs/tools/misc/gparted/default.nix b/pkgs/tools/misc/gparted/default.nix index 67e5a7848b2e..76bfb8c661ed 100644 --- a/pkgs/tools/misc/gparted/default.nix +++ b/pkgs/tools/misc/gparted/default.nix @@ -4,10 +4,10 @@ }: stdenv.mkDerivation rec { - name = "gparted-0.28.1"; + name = "gparted-0.29.0"; src = fetchurl { - sha256 = "0cyk8lpimm6wani8khw0szwqkgw5wpq2mfnfxkbgfm2774a1z2bn"; + sha256 = "1kf3ly7m3bikyzapjw8q1rlia0kg5zzgp59akhabx1rnnimvyl12"; url = "mirror://sourceforge/gparted/${name}.tar.gz"; }; diff --git a/pkgs/tools/misc/hdf5/default.nix b/pkgs/tools/misc/hdf5/default.nix index eb29e7d914c5..1b979bae0900 100644 --- a/pkgs/tools/misc/hdf5/default.nix +++ b/pkgs/tools/misc/hdf5/default.nix @@ -1,5 +1,7 @@ { stdenv , fetchurl +, gcc +, removeReferencesTo , cpp ? false , gfortran ? null , zlib ? null @@ -30,6 +32,8 @@ stdenv.mkDerivation rec { inherit mpi; }; + nativeBuildInputs = [ removeReferencesTo ]; + buildInputs = [] ++ optional (gfortran != null) gfortran ++ optional (szip != null) szip; @@ -47,6 +51,10 @@ stdenv.mkDerivation rec { patches = [./bin-mv.patch]; + postInstall = '' + find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' + + ''; + meta = { description = "Data model, library, and file format for storing and managing data"; longDescription = '' @@ -58,5 +66,6 @@ stdenv.mkDerivation rec { license = stdenv.lib.licenses.free; # BSD-like homepage = https://www.hdfgroup.org/HDF5/; platforms = stdenv.lib.platforms.unix; + broken = (gfortran != null) && stdenv.isDarwin; }; } diff --git a/pkgs/tools/misc/ipxe/default.nix b/pkgs/tools/misc/ipxe/default.nix index 6cd451264ab4..2d36ad17eec7 100644 --- a/pkgs/tools/misc/ipxe/default.nix +++ b/pkgs/tools/misc/ipxe/default.nix @@ -1,8 +1,8 @@ { stdenv, fetchgit, perl, cdrkit, syslinux, xz, openssl }: let - date = "20160831"; - rev = "827dd1bfee67daa683935ce65316f7e0f057fe1c"; + date = "20170922"; + rev = "74d90b33f8490adcee2026ece18d8411d93b6a39"; in stdenv.mkDerivation { @@ -12,7 +12,7 @@ stdenv.mkDerivation { src = fetchgit { url = git://git.ipxe.org/ipxe.git; - sha256 = "11w8b0vln3skfn8r1cvzngslz12njdkwmnacyq3qffb96k2dn2ww"; + sha256 = "12ijrq451fj2x3i7c7xjlxig5mwbhmgzqjvmfl2sza953vfbk4vw"; inherit rev; }; @@ -40,6 +40,10 @@ stdenv.mkDerivation { installPhase = '' mkdir -p $out cp bin/ipxe.dsk bin/ipxe.usb bin/ipxe.iso bin/ipxe.lkrn bin/undionly.kpxe $out + + # Some PXE constellations especially with dnsmasq are looking for the file with .0 ending + # let's provide it as a symlink to be compatible in this case. + ln -s undionly.kpxe $out/undionly.kpxe.0 ''; meta = with stdenv.lib; diff --git a/pkgs/tools/misc/mongodb-tools/default.nix b/pkgs/tools/misc/mongodb-tools/default.nix index f67fd383f18d..7e24c955a806 100644 --- a/pkgs/tools/misc/mongodb-tools/default.nix +++ b/pkgs/tools/misc/mongodb-tools/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, buildGoPackage, fetchFromGitHub }: +{ stdenv, buildGoPackage, fetchFromGitHub, openssl_1_0_2, pkgconfig, libpcap }: let tools = [ @@ -6,9 +6,12 @@ let "mongooplog" "mongorestore" "mongostat" "mongotop" ]; in + +with stdenv.lib; + buildGoPackage rec { name = "mongo-tools-${version}"; - version = "3.0.12"; + version = "3.5.13"; rev = "r${version}"; goPackagePath = "github.com/mongodb/mongo-tools"; @@ -18,20 +21,27 @@ buildGoPackage rec { inherit rev; owner = "mongodb"; repo = "mongo-tools"; - sha256 = "142vxgniri1mfy2xmfgxhbdp6k6h8c5milv454krv1b51v43hsbm"; + sha256 = "00klm4pyx5k39nn4pmfrpnkqxdhbzm7lprgwxszpirzrarh2g164"; }; goDeps = ./deps.nix; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ openssl_1_0_2 libpcap ]; + # Mongodb incorrectly names all of their binaries main # Let's work around this with our own installer - preInstall = '' - mkdir -p $bin/bin - '' + toString (map (t: '' - go install $goPackagePath/${t}/main - mv go/bin/main $bin/bin/${t} - '' - ) tools) + '' - rm -r go/bin + buildPhase = '' + runHook preBuild + ${stdenv.lib.concatMapStrings (t: '' + go build -o "$bin/bin/${t}" -tags ssl -ldflags "-s -w" $goPackagePath/${t}/main + '') tools} + runHook postBuild ''; + + meta = { + homepage = https://github.com/mongodb/mongo-tools; + description = "Tools for the MongoDB"; + license = licenses.asl20; + }; } diff --git a/pkgs/tools/misc/mongodb-tools/deps.nix b/pkgs/tools/misc/mongodb-tools/deps.nix index 437dcd649373..30de006db6f7 100644 --- a/pkgs/tools/misc/mongodb-tools/deps.nix +++ b/pkgs/tools/misc/mongodb-tools/deps.nix @@ -1,11 +1,20 @@ [ { + goPackagePath = "golang.org/x/sys"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sys"; + rev = "314a259e304ff91bd6985da2a7149bbf91237993"; + sha256 = "0vya62c3kmhmqx6awlxx8hc84987xkym9rhs0q28vlhwk9kczdaa"; + }; + } + { goPackagePath = "golang.org/x/crypto"; fetch = { type = "git"; - url = "https://go.googlesource.com/crypto"; - rev = "575fdbe86e5dd89229707ebec0575ce7d088a4a6"; - sha256 = "1kgv1mkw9y404pk3lcwbs0vgl133mwyp294i18jg9hp10s5d56xa"; + url = "https://github.com/golang/crypto"; + rev = "1f22c0103821b9390939b6776727195525381532"; + sha256 = "1acy12f396sr3lrnbcnym5q72qnlign5bagving41qijzjnc219m"; }; } { @@ -13,17 +22,62 @@ fetch = { type = "git"; url = "https://github.com/howeyc/gopass"; - rev = "2c70fa70727c953c51695f800f25d6b44abb368e"; - sha256 = "152lrkfxk205rlxiign0w5wb0fmfh910yz4jhlv4f4l1qr1h2lx8"; + rev = "bf9dde6d0d2c004a008c27aaee91170c786f6db8"; + sha256 = "1jxzyfnqi0h1fzlsvlkn10bncic803bfhslyijcxk55mgh297g45"; }; } { goPackagePath = "gopkg.in/mgo.v2"; fetch = { type = "git"; - url = "https://gopkg.in/mgo.v2"; - rev = "c6a7dce14133ccac2dcac3793f1d6e2ef048503a"; - sha256 = "0rg232q1bkq3y3kd5816hgk1jpf7i38aha5q5ia7j6p9xashz7vj"; + url = "https://github.com/10gen/mgo"; + rev = "39b4000d99037e917f3a3b9d2dcab667a9ef284a"; + sha256 = "1m0xgd3y32g15fhl204g2caarfi5rn41m8pyym0i2gl3jnv5zw99"; + }; + } + { + goPackagePath = "github.com/google/gopacket"; + fetch = { + type = "git"; + url = "https://github.com/google/gopacket"; + rev = "93b782132903d1846aab74cb1f62e6138564949f"; + sha256 = "0l5m5a8dnqbkhphyfq7anj5zv59s74q2l7i6w9r7xwysfiqyq335"; + }; + } + { + goPackagePath = "github.com/patrickmn/go-cache"; + fetch = { + type = "git"; + url = "https://github.com/patrickmn/go-cache"; + rev = "1881a9bccb818787f68c52bfba648c6cf34c34fa"; + sha256 = "1nd0kqijx6mrxb8wlh20bx73mwj0fqzla2sr68y6j6lz3fsy1fw2"; + }; + } + { + goPackagePath = "github.com/spacemonkeygo/openssl"; + fetch = { + type = "git"; + url = "https://github.com/10gen/openssl"; + rev = "2692b9f6fa95e72c75f8d9ba76e49c5dfd2cf8e4"; + sha256 = "16x2mx51977jrqw8d9hqhqmx892v2qf1k5xb01hhfklh58f527k2"; + }; + } + { + goPackagePath = "github.com/jtolds/gls"; + fetch = { + type = "git"; + url = "https://github.com/jtolds/gls"; + rev = "8ddce2a84170772b95dd5d576c48d517b22cac63"; + sha256 = "11rp9wbzkd71640rq0nwmgsddskx3qac8wzqz71ksdb7ixjj5fmj"; + }; + } + { + goPackagePath = "github.com/spacemonkeygo/spacelog"; + fetch = { + type = "git"; + url = "https://github.com/spacemonkeygo/spacelog"; + rev = "f936fb050dc6b5fe4a96b485a6f069e8bdc59aeb"; + sha256 = "00an6zlhjk5l0vk1zjzshhswsd0h4syi48n50hv0fcnbmpxc5hv2"; }; } { @@ -36,12 +90,93 @@ }; } { + goPackagePath = "github.com/jtolds/gls"; + fetch = { + type = "git"; + url = "https://github.com/jtolds/gls"; + rev = "8ddce2a84170772b95dd5d576c48d517b22cac63"; + sha256 = "11rp9wbzkd71640rq0nwmgsddskx3qac8wzqz71ksdb7ixjj5fmj"; + }; + } + { + goPackagePath = "github.com/smartystreets/assertions"; + fetch = { + type = "git"; + url = "https://github.com/smartystreets/assertions"; + rev = "287b4346dc4e71a038c346375a9d572453bc469b"; + sha256 = "1nw9j9aircra68lbkp5bq4l8ayq4g3fvbb2x8qd2hg0vwgn5yaij"; + }; + } + { + goPackagePath = "github.com/smartystreets/goconvey"; + fetch = { + type = "git"; + url = "https://github.com/smartystreets/goconvey"; + rev = "bf58a9a1291224109919756b4dcc469c670cc7e4"; + sha256 = "1k8k6vvlpl5a19dbrywxjmcia36macjbajx2hb6ci64rdfyf5kz5"; + }; + } + { + goPackagePath = "github.com/jacobsa/oglematchers"; + fetch = { + type = "git"; + url = "https://github.com/jacobsa/oglematchers"; + rev = "3ecefc49db07722beca986d9bb71ddd026b133f0"; + sha256 = "0vrk5sfs1ymkg0gv5n5dn9x0kqiaw8gaapljj8q75mgrr1p5149y"; + }; + } + { + goPackagePath = "github.com/3rf/mongo-lint"; + fetch = { + type = "git"; + url = "https://github.com/3rf/mongo-lint"; + rev = "3550fdcf1f43b89aaeabaa4559eaae6dc4407e42"; + sha256 = "19b60a3i6kzssd15dg57y4bg49sw41idrsjdi8vr4j5lr5d7gviv"; + }; + } + { + goPackagePath = "github.com/mattn/go-runewidth"; + fetch = { + type = "git"; + url = "https://github.com/mattn/go-runewidth"; + rev = "d6bea18f789704b5f83375793155289da36a3c7f"; + sha256 = "1hnigpn7rjbwd1ircxkyx9hvi0xmxr32b2jdy2jzw6b3jmcnz1fs"; + }; + } + { + goPackagePath = "github.com/10gen/escaper"; + fetch = { + type = "git"; + url = "https://github.com/10gen/escaper"; + rev = "17fe61c658dcbdcbf246c783f4f7dc97efde3a8b"; + sha256 = "1iw86lg8ad5gdm46ryf4v431ix834l52lrjvcahq3c4dw1ylnbvl"; + }; + } + { + goPackagePath = "github.com/golang/snappy"; + fetch = { + type = "git"; + url = "https://github.com/golang/snappy"; + rev = "d9eb7a3d35ec988b8585d4a0068e462c27d28380"; + sha256 = "0wynarlr1y8sm9y9l29pm9dgflxriiialpwn01066snzjxnpmbyn"; + }; + } + { + goPackagePath = "github.com/nsf/termbox-go"; + fetch = { + type = "git"; + url = "https://github.com/nsf/termbox-go"; + rev = "0723e7c3d0a317dea811f0fbe4d6edd81908c971"; + sha256 = "1ak35nhlgjpbpnh7v9qvjyfsq52liz3niqfqva76p7a68pblwbr7"; + }; + } + { goPackagePath = "github.com/jessevdk/go-flags"; fetch = { type = "git"; url = "https://github.com/jessevdk/go-flags"; - rev = "1b89bf73cd2c3a911d7b2a279ab085c4a18cf539"; - sha256 = "027nglc5xx1cm03z9sisg0iqrhwcj6gh5z254rrpl8p4fwrxx680"; + rev = "97448c91aac742cbca3d020b3e769013a420a06f"; + sha256 = "0fv3yxvq8m3639a279hq4pf0c52ngqfl5n1vklcfympndrb7zjzj"; }; } ] diff --git a/pkgs/tools/misc/mpdscribble/default.nix b/pkgs/tools/misc/mpdscribble/default.nix index 1acdf6d7ddb8..56684848ebaa 100644 --- a/pkgs/tools/misc/mpdscribble/default.nix +++ b/pkgs/tools/misc/mpdscribble/default.nix @@ -10,12 +10,8 @@ stdenv.mkDerivation rec { sha256 = "0hgb7xh3w455m00lpldwkyrc5spjn3q1pl2ry3kf7w3hiigjpphw"; }; - buildInputs = [ mpd_clientlib curl glib pkgconfig ]; - - preConfigure = '' - export LIBMPDCLIENT_LIBS=${mpd_clientlib}/lib/libmpdclient.so.${mpd_clientlib.majorVersion}.0.${mpd_clientlib.minorVersion} - export LIBMPDCLIENT_CFLAGS=${mpd_clientlib} - ''; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ mpd_clientlib curl glib ]; meta = with stdenv.lib; { description = "A Music Player Daemon (MPD) client which submits information about tracks beeing played to a scrobbler (e.g. last.fm)"; diff --git a/pkgs/tools/misc/routino/default.nix b/pkgs/tools/misc/routino/default.nix new file mode 100644 index 000000000000..e3e174e0204a --- /dev/null +++ b/pkgs/tools/misc/routino/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchurl, perl, zlib, bzip2 }: + +stdenv.mkDerivation rec { + name = "routino-${version}"; + version = "3.2"; + + src = fetchurl { + url = "http://routino.org/download/${name}.tgz"; + sha256 = "0lkmpi8gn7qf40cx93jcp7nxa9dfwi1d6rjrhcqbdymszzm33972"; + }; + + nativeBuildInputs = [ perl ]; + + buildInputs = [ zlib bzip2 ]; + + outputs = [ "out" "doc" ]; + + makeFlags = [ "prefix=$(out)" ]; + + meta = with stdenv.lib; { + homepage = http://www.routino.org/; + description = "OpenStreetMap Routing Software"; + license = licenses.agpl3; + maintainter = with maintainers; [ dotlambda ]; + platforms = with platforms; linux; + }; +} diff --git a/pkgs/tools/misc/system-config-printer/default.nix b/pkgs/tools/misc/system-config-printer/default.nix index fbef31fb5467..72d45c90f106 100644 --- a/pkgs/tools/misc/system-config-printer/default.nix +++ b/pkgs/tools/misc/system-config-printer/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ wrapGAppsHook ]; pythonPath = with pythonPackages; - [ pycups pycurl dbus-python pygobject3 requests pycairo pythonPackages.pycurl ]; + [ pycups pycurl dbus-python pygobject3 requests pycairo pysmbc ]; configureFlags = [ "--with-udev-rules" diff --git a/pkgs/tools/misc/tmux/default.nix b/pkgs/tools/misc/tmux/default.nix index a749f250c11d..61370ff890bc 100644 --- a/pkgs/tools/misc/tmux/default.nix +++ b/pkgs/tools/misc/tmux/default.nix @@ -13,7 +13,7 @@ in stdenv.mkDerivation rec { name = "tmux-${version}"; - version = "2.5"; + version = "2.6"; outputs = [ "out" "man" ]; @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { owner = "tmux"; repo = "tmux"; rev = version; - sha256 = "0zwjngfaqrlwwbzicc5pq5pyws8f1qghcajvj0hwkipj51hqyswf"; + sha256 = "0605y0nwfmf0mnq075vk80897c2cvhxxvxinqq7hvrpjf2ph5mww"; }; nativeBuildInputs = [ pkgconfig autoreconfHook ]; diff --git a/pkgs/tools/misc/unicode/default.nix b/pkgs/tools/misc/unicode/default.nix new file mode 100644 index 000000000000..d2a4ed39e9ac --- /dev/null +++ b/pkgs/tools/misc/unicode/default.nix @@ -0,0 +1,30 @@ +{ stdenv, fetchFromGitHub, fetchurl, python3Packages }: + +python3Packages.buildPythonApplication rec { + name = "unicode-${version}"; + version = "2.5"; + + src = fetchFromGitHub { + owner = "garabik"; + repo = "unicode"; + rev = "v${version}"; + sha256 = "0vg1zshlzgdva8gzw6fya28fc4jhypjkj743x3q0yabx6934k0g2"; + }; + + ucdtxt = fetchurl { + url = http://www.unicode.org/Public/10.0.0/ucd/UnicodeData.txt; + sha256 = "1cfak1j753zcrbgixwgppyxhm4w8vda8vxhqymi7n5ljfi6kwhjj"; + }; + + postFixup = '' + substituteInPlace "$out/bin/.unicode-wrapped" \ + --replace "/usr/share/unicode/UnicodeData.txt" "$ucdtxt" + ''; + + meta = with stdenv.lib; { + description = "Display unicode character properties"; + homepage = https://github.com/garabik/unicode; + license = licenses.gpl3; + maintainers = [ maintainers.woffs ]; + }; +} diff --git a/pkgs/tools/misc/xflux/gui.nix b/pkgs/tools/misc/xflux/gui.nix index 1fd3b3d8371f..d8959687945a 100644 --- a/pkgs/tools/misc/xflux/gui.nix +++ b/pkgs/tools/misc/xflux/gui.nix @@ -4,13 +4,13 @@ }: pythonPackages.buildPythonApplication rec { name = "xflux-gui-${version}"; - version = "2016-09-21"; + version = "1.1.10"; src = fetchFromGitHub { repo = "xflux-gui"; owner = "xflux-gui"; - rev = "0b56204477494b473a390e8b0db043437ec14f32"; - sha256 = "15pr8f31jnhqjlpvasnj6cmm6hw5gljphh2pxzav3zd9bp4yl56r"; + rev = "v${version}"; + sha256 = "1k67qg9y4c0n9ih0syx81ixbdl2x89gd4arwh71316cshskn0rc8"; }; propagatedBuildInputs = with pythonPackages; [ @@ -32,7 +32,6 @@ pythonPackages.buildPythonApplication rec { postFixup = '' wrapGAppsHook - makeWrapperArgs="''${gappsWrapperArgs[@]}" wrapPythonPrograms patchPythonScript $out/${pythonPackages.python.sitePackages}/fluxgui/fluxapp.py ''; diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix index 3af0c5435604..dc5f6fb03c0c 100644 --- a/pkgs/tools/misc/youtube-dl/default.nix +++ b/pkgs/tools/misc/youtube-dl/default.nix @@ -15,11 +15,11 @@ with stdenv.lib; buildPythonApplication rec { name = "youtube-dl-${version}"; - version = "2017.09.15"; + version = "2017.10.01"; src = fetchurl { url = "https://yt-dl.org/downloads/${version}/${name}.tar.gz"; - sha256 = "1kw8pqzvhbpyxcz2jb692j4cgzd3vmd81mra09xvpzkq974jkx7f"; + sha256 = "047zinsczn6c96fzkarlb29y7sjwyh84nxlpfpa6mi4rn090wkqb"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/networking/chrony/default.nix b/pkgs/tools/networking/chrony/default.nix index b805a4bfcf32..5ddb663a4ae5 100644 --- a/pkgs/tools/networking/chrony/default.nix +++ b/pkgs/tools/networking/chrony/default.nix @@ -6,11 +6,11 @@ assert stdenv.isLinux -> libcap != null; stdenv.mkDerivation rec { name = "chrony-${version}"; - version = "3.1"; + version = "3.2"; src = fetchurl { url = "http://download.tuxfamily.org/chrony/${name}.tar.gz"; - sha256 = "0xb03dya1zhcn1gch2v2ynifxw95g8m3plr9q4ys0s3pvgf0g4cx"; + sha256 = "05j17i1zlg19v8jkzlp710kbdgnb4541zgkqxqzcwglcvlc6g7rj"; }; buildInputs = [ readline texinfo nss nspr ] diff --git a/pkgs/tools/networking/dnsmasq/default.nix b/pkgs/tools/networking/dnsmasq/default.nix index 801d41c852b8..badf33074465 100644 --- a/pkgs/tools/networking/dnsmasq/default.nix +++ b/pkgs/tools/networking/dnsmasq/default.nix @@ -11,11 +11,11 @@ let ]); in stdenv.mkDerivation rec { - name = "dnsmasq-2.77"; + name = "dnsmasq-2.78"; src = fetchurl { url = "http://www.thekelleys.org.uk/dnsmasq/${name}.tar.xz"; - sha256 = "12lbbwpy1wxi6n5dngv30x8g8v13apdnvjgq7w71f9dfa0f3pb3f"; + sha256 = "0ar5h5v3kas2qx2wgy5iqin15gc4jhqrqs067xacgc3lii1rz549"; }; preBuild = '' diff --git a/pkgs/tools/networking/goklp/default.nix b/pkgs/tools/networking/goklp/default.nix new file mode 100644 index 000000000000..88a6b74686c2 --- /dev/null +++ b/pkgs/tools/networking/goklp/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "goklp-${version}"; + version = "1.6"; + + goPackagePath = "github.com/AppliedTrust/goklp"; + + src = fetchFromGitHub { + owner = "AppliedTrust"; + repo = "goklp"; + rev = "v${version}"; + sha256 = "054qmwfaih8qbvdyy4rqbb1ip3jpnm547n390hgab8yc3bdd840c"; + }; + + goDeps = ./deps.nix; + + meta = with stdenv.lib; { + description = "Golang OpenSSH Keys Ldap Provider for AuthorizedKeysCommand"; + homepage = https://github.com/AppliedTrust/goklp; + maintainers = with maintainers; [ disassembler ]; + license = licenses.bsd2; + }; +} diff --git a/pkgs/tools/networking/goklp/deps.nix b/pkgs/tools/networking/goklp/deps.nix new file mode 100644 index 000000000000..2f6481f237f8 --- /dev/null +++ b/pkgs/tools/networking/goklp/deps.nix @@ -0,0 +1,56 @@ +[ + { + goPackagePath = "github.com/asaskevich/govalidator"; + fetch = { + type = "git"; + url = "https://github.com/asaskevich/govalidator"; + rev = "ca5f9e638c83bac66bfac70ded5bded1503135a7"; + sha256 = "0lk4irlf4a4q8qharwjxl71y1s2cf5bjpg9cv5jlyp574331pn1w"; + }; + } + { + goPackagePath = "github.com/docopt/docopt-go"; + fetch = { + type = "git"; + url = "https://github.com/docopt/docopt-go"; + rev = "784ddc588536785e7299f7272f39101f7faccc3f"; + sha256 = "0wwz48jl9fvl1iknvn9dqr4gfy1qs03gxaikrxxp9gry6773v3sj"; + }; + } + { + goPackagePath = "github.com/kardianos/osext"; + fetch = { + type = "git"; + url = "https://github.com/kardianos/osext"; + rev = "ae77be60afb1dcacde03767a8c37337fad28ac14"; + sha256 = "056dkgxrqjj5r18bnc3knlpgdz5p3yvp12y4y978hnsfhwaqvbjz"; + }; + } + { + goPackagePath = "github.com/vaughan0/go-ini"; + fetch = { + type = "git"; + url = "https://github.com/vaughan0/go-ini"; + rev = "a98ad7ee00ec53921f08832bc06ecf7fd600e6a1"; + sha256 = "1l1isi3czis009d9k5awsj4xdxgbxn4n9yqjc1ac7f724x6jacfa"; + }; + } + { + goPackagePath = "gopkg.in/asn1-ber.v1"; + fetch = { + type = "git"; + url = "https://gopkg.in/asn1-ber.v1"; + rev = "379148ca0225df7a432012b8df0355c2a2063ac0"; + sha256 = "1y8bvzbxpw0lfnn7pbcdwzqj4l90qj6xf88dvv9pxd9yl5g6cskx"; + }; + } + { + goPackagePath = "gopkg.in/ldap.v2"; + fetch = { + type = "git"; + url = "https://gopkg.in/ldap.v2"; + rev = "8168ee085ee43257585e50c6441aadf54ecb2c9f"; + sha256 = "1w0993i8bl8sap01gwm1v6hjp0rsanj2mbpyabwcwnns2g79n895"; + }; + } +] diff --git a/pkgs/tools/networking/lftp/default.nix b/pkgs/tools/networking/lftp/default.nix index b6d8baeee7ec..aa5a7b514cb8 100644 --- a/pkgs/tools/networking/lftp/default.nix +++ b/pkgs/tools/networking/lftp/default.nix @@ -1,8 +1,8 @@ -{ stdenv, fetchurl, gnutls, pkgconfig, readline, zlib, libidn2, gmp, libiconv, gettext }: +{ stdenv, fetchurl, gnutls, pkgconfig, readline, zlib, libidn2, gmp, libiconv, libunistring, gettext }: stdenv.mkDerivation rec { name = "lftp-${version}"; - version = "4.8.0"; + version = "4.8.2"; src = fetchurl { urls = [ @@ -10,12 +10,12 @@ stdenv.mkDerivation rec { "ftp://ftp.st.ryukoku.ac.jp/pub/network/ftp/lftp/${name}.tar.bz2" "http://lftp.yar.ru/ftp/old/${name}.tar.bz2" ]; - sha256 = "0z2432zxzg808swi72yak9kia976qrjj030grk0v4p54mcib3s34"; + sha256 = "0a4sp9khqgny1md0b2c9vvg4c7sz0g31w3sfdslxw7dsvijin3mn"; }; nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ gnutls readline zlib libidn2 gmp libiconv ] + buildInputs = [ gnutls readline zlib libidn2 gmp libiconv libunistring ] ++ stdenv.lib.optional stdenv.isDarwin gettext; hardeningDisable = stdenv.lib.optional stdenv.isDarwin "format"; diff --git a/pkgs/tools/networking/modemmanager/default.nix b/pkgs/tools/networking/modemmanager/default.nix index dc4e246c02fb..36c56ac98477 100644 --- a/pkgs/tools/networking/modemmanager/default.nix +++ b/pkgs/tools/networking/modemmanager/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "ModemManager-${version}"; - version = "1.6.2"; + version = "1.6.8"; src = fetchurl { url = "http://www.freedesktop.org/software/ModemManager/${name}.tar.xz"; - sha256 = "14v31j916h63z7af107rias1zbb2y94p3jg77zhzhrn1v6c46m74"; + sha256 = "0xj3ng7qcqxkib5qkprwghcivaz0mn449fw08l67h1zbpz23bh7z"; }; nativeBuildInputs = [ intltool pkgconfig ]; diff --git a/pkgs/tools/networking/network-manager-applet/default.nix b/pkgs/tools/networking/network-manager-applet/default.nix index c0c4950f4471..3220aebdfe49 100644 --- a/pkgs/tools/networking/network-manager-applet/default.nix +++ b/pkgs/tools/networking/network-manager-applet/default.nix @@ -1,7 +1,8 @@ { stdenv, fetchurl, intltool, pkgconfig, libglade, networkmanager, gnome3 , libnotify, libsecret, polkit, isocodes, modemmanager, librsvg , mobile_broadband_provider_info, glib_networking, gsettings_desktop_schemas -, makeWrapper, udev, libgudev, hicolor_icon_theme, jansson, wrapGAppsHook, webkitgtk }: +, makeWrapper, udev, libgudev, hicolor_icon_theme, jansson, wrapGAppsHook, webkitgtk +, withGnome ? false }: stdenv.mkDerivation rec { name = "${pname}-${major}.${minor}"; @@ -24,8 +25,8 @@ stdenv.mkDerivation rec { buildInputs = [ gnome3.gtk libglade networkmanager libnotify libsecret gsettings_desktop_schemas polkit isocodes makeWrapper udev libgudev gnome3.gconf gnome3.libgnome_keyring - modemmanager jansson librsvg glib_networking gnome3.dconf webkitgtk - ]; + modemmanager jansson librsvg glib_networking gnome3.dconf + ] ++ stdenv.lib.optional withGnome webkitgtk; nativeBuildInputs = [ intltool pkgconfig wrapGAppsHook ]; diff --git a/pkgs/tools/networking/network-manager/openvpn.nix b/pkgs/tools/networking/network-manager/openvpn.nix index 3edbe7dba6ed..47dca561d6cb 100644 --- a/pkgs/tools/networking/network-manager/openvpn.nix +++ b/pkgs/tools/networking/network-manager/openvpn.nix @@ -4,12 +4,12 @@ stdenv.mkDerivation rec { name = "${pname}${if withGnome then "-gnome" else ""}-${version}"; pname = "NetworkManager-openvpn"; - major = "1.2"; - version = "${major}.8"; + major = "1.8"; + version = "${major}.0"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${major}/${pname}-${version}.tar.xz"; - sha256 = "0m06sg2rnz764psvpsrx0pvll11nfn9hypgbp3s6vna8y83l02ry"; + sha256 = "1973n89g66a3jfx8r45a811fga4kadh6r1w35cb25cz1mlii2vhn"; }; buildInputs = [ openvpn networkmanager libsecret ] diff --git a/pkgs/tools/networking/openvpn/default.nix b/pkgs/tools/networking/openvpn/default.nix index 78f21e78277d..ddcdfd31c260 100644 --- a/pkgs/tools/networking/openvpn/default.nix +++ b/pkgs/tools/networking/openvpn/default.nix @@ -8,11 +8,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "openvpn-${version}"; - version = "2.4.3"; + version = "2.4.4"; src = fetchurl { url = "http://swupdate.openvpn.net/community/releases/${name}.tar.xz"; - sha256 = "0w85915nvdws1n1zsn8zcy9wg23jsx782nvrx1a3x4mqlmkn3a3s"; + sha256 = "102an395nv8l7qfx3syydzhmd9xfbycd6gvwy0h2kjz8w67ipkcn"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/tools/networking/uqmi/default.nix b/pkgs/tools/networking/uqmi/default.nix new file mode 100644 index 000000000000..010d6a7f8e85 --- /dev/null +++ b/pkgs/tools/networking/uqmi/default.nix @@ -0,0 +1,27 @@ +{ stdenv, lib, fetchgit, cmake, perl, libubox, json_c }: + +stdenv.mkDerivation { + name = "uqmi-2016-12-19"; + + src = fetchgit { + url = "https://git.openwrt.org/project/uqmi.git"; + rev = "8ceeab690d8c6f1e3afbd4bcaee7bc2ba3fbe165"; + sha256 = "1fw9r36d024iiq6bq2cikaq5pams5pnbc4z6pcmcny2k4l5cdb6m"; + }; + + postPatch = '' + substituteInPlace data/gen-header.pl --replace /usr/bin/env "" + patchShebangs . + ''; + + nativeBuildInputs = [ cmake perl ]; + buildInputs = [ libubox json_c ]; + + meta = with lib; { + description = "Tiny QMI command line utility"; + homepage = "https://git.openwrt.org/?p=project/uqmi.git;a=summary"; + license = licenses.gpl2Plus; + platforms = platforms.all; + maintainers = with maintainers; [ fpletz ]; + }; +} diff --git a/pkgs/tools/security/bash-supergenpass/default.nix b/pkgs/tools/security/bash-supergenpass/default.nix new file mode 100644 index 000000000000..f85d847f5f95 --- /dev/null +++ b/pkgs/tools/security/bash-supergenpass/default.nix @@ -0,0 +1,39 @@ +{ stdenv, fetchFromGitHub, makeWrapper, openssl, coreutils, gnugrep }: + +stdenv.mkDerivation rec { + name = "bash-supergenpass-unstable-${version}"; + version = "2012-11-02"; + + nativeBuildInputs = [ makeWrapper ]; + + src = fetchFromGitHub { + owner = "lanzz"; + repo = "bash-supergenpass"; + rev = "c84eaa22fb59ab6c390e7f2de7984513347e3a9a"; + sha256 = "0d3l55kdrf6arb98vwwz9ww55ing5w323fg7546v56hlq3hs5qc9"; + }; + + installPhase = '' + install -m755 -D supergenpass.sh "$out/bin/supergenpass" + wrapProgram "$out/bin/supergenpass" --prefix PATH : "${stdenv.lib.makeBinPath [ openssl coreutils gnugrep ]}" + ''; + + meta = with stdenv.lib; { + description = "Bash shell-script implementation of SuperGenPass password generation"; + longDescription = '' + Bash shell-script implementation of SuperGenPass password generation + Usage: ./supergenpass.sh <domain> [ <length> ] + + Default <length> is 10, which is also the original SuperGenPass default length. + + The <domain> parameter is also optional, but it does not make much sense to omit it. + + supergenpass will ask for your master password interactively, and it will not be displayed on your terminal. + ''; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ fgaz ]; + homepage = https://github.com/lanzz/bash-supergenpass; + }; +} + diff --git a/pkgs/tools/security/kbfs/default.nix b/pkgs/tools/security/kbfs/default.nix index 7b3e7d99a437..ba024328ba5f 100644 --- a/pkgs/tools/security/kbfs/default.nix +++ b/pkgs/tools/security/kbfs/default.nix @@ -2,18 +2,18 @@ buildGoPackage rec { name = "kbfs-${version}"; - version = "20170922.f76290"; + version = "20171004.40555d"; goPackagePath = "github.com/keybase/kbfs"; - subPackages = [ "kbfsfuse" ]; + subPackages = [ "kbfsfuse" "kbfsgit/git-remote-keybase" ]; dontRenameImports = true; src = fetchFromGitHub { owner = "keybase"; repo = "kbfs"; - rev = "f76290f6e1a8cbaa6046980c67c548fbff9e123a"; - sha256 = "1v086wmc0hly4b91y6xndfdhj981n2yr6nnb3rl6f4kwx291ih54"; + rev = "40555dbc9c93a05f3a82053860df30e45c7bd779"; + sha256 = "08wj8fh1ja8kfzvbza5csy9mpfy39lifnzvfrnbj7vyyv88qc3h0"; }; buildFlags = [ "-tags production" ]; diff --git a/pkgs/tools/security/keybase-gui/default.nix b/pkgs/tools/security/keybase-gui/default.nix index a45a6ea2a04c..ce98740e89bd 100644 --- a/pkgs/tools/security/keybase-gui/default.nix +++ b/pkgs/tools/security/keybase-gui/default.nix @@ -37,10 +37,10 @@ let in stdenv.mkDerivation rec { name = "keybase-gui-${version}"; - version = "1.0.25-20170714172717.73f9070"; + version = "1.0.33-20171003193427.d9ceb86ac"; src = fetchurl { url = "https://s3.amazonaws.com/prerelease.keybase.io/linux_binaries/deb/keybase_${version}_amd64.deb"; - sha256 = "0yrq18rrc30f7ymajvd71r29z1by7h6abyaxx2gmrg648qgc6zv4"; + sha256 = "0sqani2fy5jzqmz35md1bdw2vwpx91l87b6s3x9z53halzq7vfy6"; }; phases = ["unpackPhase" "installPhase" "fixupPhase"]; unpackPhase = '' diff --git a/pkgs/tools/security/keybase/default.nix b/pkgs/tools/security/keybase/default.nix index 229a45b87314..049867afcd72 100644 --- a/pkgs/tools/security/keybase/default.nix +++ b/pkgs/tools/security/keybase/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { name = "keybase-${version}"; - version = "1.0.30"; + version = "1.0.33"; goPackagePath = "github.com/keybase/client"; subPackages = [ "go/keybase" ]; @@ -13,7 +13,7 @@ buildGoPackage rec { owner = "keybase"; repo = "client"; rev = "v${version}"; - sha256 = "0vivc71xfi4y3ydd29b17qxzi10r3a1ppmjjws6vrs0gz58bz1j8"; + sha256 = "1zgvriyir2ga0p4ah9ia1sbl9ydnrnw5ggq4c1ya8gcfgn8vzdsf"; }; postInstall = stdenv.lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/tools/security/metasploit/default.nix b/pkgs/tools/security/metasploit/default.nix index 15a30db522eb..37796fef1747 100644 --- a/pkgs/tools/security/metasploit/default.nix +++ b/pkgs/tools/security/metasploit/default.nix @@ -35,14 +35,14 @@ in stdenv.mkDerivation rec { cp -r * $out/share/msf - for i in $out/share/msf/msf*; do - bin=$out/bin/$(basename $i) - cat > $bin <<EOF -#!/bin/sh -e -exec ${env}/bin/bundle exec ${ruby}/bin/ruby $i "\$@" -EOF - chmod +x $bin - done + ( + cd $out/share/msf/ + for i in msf*; do + makeWrapper ${env}/bin/bundle $out/bin/$i \ + --add-flags "exec ${ruby}/bin/ruby $out/share/msf/$i" + done + ) + ''; meta = with stdenv.lib; { diff --git a/pkgs/tools/security/oath-toolkit/default.nix b/pkgs/tools/security/oath-toolkit/default.nix index 98635f8cc85d..965ecda164be 100644 --- a/pkgs/tools/security/oath-toolkit/default.nix +++ b/pkgs/tools/security/oath-toolkit/default.nix @@ -6,14 +6,14 @@ let else pam; in stdenv.mkDerivation rec { - name = "oath-toolkit-2.6.1"; + name = "oath-toolkit-2.6.2"; src = fetchurl { url = "mirror://savannah/oath-toolkit/${name}.tar.gz"; - sha256 = "0ybg0gnddmhxga0jwdipyz8jv5mxs0kiiflhvzffl9mw0wcq6mww"; + sha256 = "182ah8vfbg0yhv6mh1b6ap944d0na6x7lpfkwkmzb6jl9gx4cd5h"; }; - + buildInputs = [ securityDependency ]; meta = { diff --git a/pkgs/tools/security/pinentry/default.nix b/pkgs/tools/security/pinentry/default.nix index 667831373c55..0d957fc97e08 100644 --- a/pkgs/tools/security/pinentry/default.nix +++ b/pkgs/tools/security/pinentry/default.nix @@ -1,12 +1,11 @@ { fetchurl, fetchpatch, stdenv, lib, pkgconfig -, libgpgerror, libassuan, libcap ? null, ncurses ? null, gtk2 ? null, qt4 ? null +, libgpgerror, libassuan, libcap ? null, libsecret ? null, ncurses ? null, gtk2 ? null, gcr ? null, qt4 ? null }: let mkFlag = pfxTrue: pfxFalse: cond: name: "--${if cond then pfxTrue else pfxFalse}-${name}"; mkEnable = mkFlag "enable" "disable"; mkWith = mkFlag "with" "without"; - hasX = gtk2 != null || qt4 != null; in with stdenv.lib; stdenv.mkDerivation rec { @@ -17,7 +16,7 @@ stdenv.mkDerivation rec { sha256 = "0ni7g4plq6x78p32al7m8h2zsakvg1rhfz0qbc3kdc7yq7nw4whn"; }; - buildInputs = [ libgpgerror libassuan libcap gtk2 ncurses qt4 ]; + buildInputs = [ libgpgerror libassuan libcap libsecret gtk2 gcr ncurses qt4 ]; prePatch = '' substituteInPlace pinentry/pinentry-curses.c --replace ncursesw ncurses @@ -39,12 +38,13 @@ stdenv.mkDerivation rec { ''; configureFlags = [ - (mkWith (libcap != null) "libcap") - (mkWith (hasX) "x") - (mkEnable (ncurses != null) "pinentry-curses") - (mkEnable true "pinentry-tty") - (mkEnable (gtk2 != null) "pinentry-gtk2") - (mkEnable (qt4 != null) "pinentry-qt4") + (mkWith (libcap != null) "libcap") + (mkEnable (libsecret != null) "libsecret") + (mkEnable (ncurses != null) "pinentry-curses") + (mkEnable true "pinentry-tty") + (mkEnable (gtk2 != null) "pinentry-gtk2") + (mkEnable (gcr != null) "pinentry-gnome3") + (mkEnable (qt4 != null) "pinentry-qt") ]; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/tools/security/sshuttle/default.nix b/pkgs/tools/security/sshuttle/default.nix index 2d663175ec9d..960d11521a74 100644 --- a/pkgs/tools/security/sshuttle/default.nix +++ b/pkgs/tools/security/sshuttle/default.nix @@ -1,6 +1,6 @@ { stdenv, python3Packages, fetchurl, makeWrapper, pandoc -, coreutils, iptables, nettools, openssh, procps }: - +, coreutils, iptables, nettools, openssh, procps, fetchpatch }: + python3Packages.buildPythonApplication rec { name = "sshuttle-${version}"; version = "0.78.3"; @@ -10,7 +10,13 @@ python3Packages.buildPythonApplication rec { url = "mirror://pypi/s/sshuttle/${name}.tar.gz"; }; - patches = [ ./sudo.patch ]; + patches = [ + ./sudo.patch + (fetchpatch { + url = "https://github.com/sshuttle/sshuttle/commit/91aa6ff625f7c89a19e6f8702425cfead44a146f.patch"; + sha256 = "0sqcc6kj53wlas2d3klbyilhns6vakzwbbp8y7j9wlmbnc530pks"; + }) + ]; nativeBuildInputs = [ makeWrapper pandoc python3Packages.setuptools_scm ]; buildInputs = @@ -29,7 +35,7 @@ python3Packages.buildPythonApplication rec { wrapProgram $out/bin/sshuttle \ --prefix PATH : "${mapPath (x: "${x}/bin") buildInputs}" \ ''; - + meta = with stdenv.lib; { homepage = https://github.com/sshuttle/sshuttle/; description = "Transparent proxy server that works as a poor man's VPN"; diff --git a/pkgs/tools/system/amtterm/default.nix b/pkgs/tools/system/amtterm/default.nix index a4c29cd6a299..a31fdd08c60d 100644 --- a/pkgs/tools/system/amtterm/default.nix +++ b/pkgs/tools/system/amtterm/default.nix @@ -4,7 +4,7 @@ stdenv.mkDerivation rec { name = "amtterm-${version}"; version = "1.6-1"; - + buildInputs = with perlPackages; [ perl SOAPLite ]; nativeBuildInputs = [ makeWrapper ]; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { sha256 = "1jxcsqkag2bxmrnr4m6g88sln1j2d9liqlna57fj8kkc85316vlc"; }; - makeFlags = [ "prefix=$(out)" ]; + makeFlags = [ "prefix=$(out)" "STRIP=" ]; postInstall = "wrapProgram $out/bin/amttool --prefix PERL5LIB : $PERL5LIB"; diff --git a/pkgs/tools/system/augeas/default.nix b/pkgs/tools/system/augeas/default.nix index e3f743766140..fb1806b850e1 100644 --- a/pkgs/tools/system/augeas/default.nix +++ b/pkgs/tools/system/augeas/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "augeas-${version}"; - version = "1.8.0"; + version = "1.8.1"; src = fetchurl { url = "http://download.augeas.net/${name}.tar.gz"; - sha256 = "1iac5lwi1q10r343ii9v5p2fdplvh06yv9svsi8zz6cd2c2fjp2i"; + sha256 = "1yf93fqwav1zsl8dpyfkf0g11w05mmfckqy6qsjy5zkklnspbkv5"; }; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ readline libxml2 ]; diff --git a/pkgs/tools/system/collectd/default.nix b/pkgs/tools/system/collectd/default.nix index 824eb74b72e5..2e12345783d2 100644 --- a/pkgs/tools/system/collectd/default.nix +++ b/pkgs/tools/system/collectd/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl +{ stdenv, fetchurl, darwin # optional: , pkgconfig ? null # most of the extra deps need pkgconfig to be found , curl ? null @@ -44,16 +44,22 @@ stdenv.mkDerivation rec { }; buildInputs = [ - pkgconfig curl iptables libatasmart libcredis libdbi libgcrypt libmemcached - cyrus_sasl libmodbus libnotify gdk_pixbuf liboping libpcap libsigrok libvirt - lm_sensors libxml2 lvm2 libmysql postgresql protobufc rabbitmq-c rrdtool - varnish yajl jdk libtool python udev net_snmp hiredis libmnl libmicrohttpd + pkgconfig curl libdbi libgcrypt libmemcached + cyrus_sasl libnotify gdk_pixbuf liboping libpcap libvirt + libxml2 libmysql postgresql protobufc rrdtool + varnish yajl jdk libtool python hiredis libmicrohttpd + ] ++ stdenv.lib.optionals stdenv.isLinux [ + iptables libatasmart libcredis libmodbus libsigrok + lm_sensors lvm2 rabbitmq-c udev net_snmp libmnl + ] ++ stdenv.lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.IOKit + darwin.apple_sdk.frameworks.ApplicationServices ]; # for some reason libsigrok isn't auto-detected configureFlags = [ "--localstatedir=/var" ] ++ - stdenv.lib.optional (libsigrok != null) "--with-libsigrok" ++ + stdenv.lib.optional (stdenv.isLinux && libsigrok != null) "--with-libsigrok" ++ stdenv.lib.optional (python != null) "--with-python=${python}/bin/python"; # do not create directories in /var during installPhase @@ -71,7 +77,7 @@ stdenv.mkDerivation rec { description = "Daemon which collects system performance statistics periodically"; homepage = https://collectd.org; license = licenses.gpl2; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = with maintainers; [ bjornfor fpletz ]; }; } diff --git a/pkgs/tools/system/facter/default.nix b/pkgs/tools/system/facter/default.nix index 56ac33ba23c6..b74f99484184 100644 --- a/pkgs/tools/system/facter/default.nix +++ b/pkgs/tools/system/facter/default.nix @@ -1,11 +1,11 @@ -{ stdenv, fetchFromGitHub, boost, cmake, cpp-hocon, curl, leatherman, libyamlcpp, openssl, ruby, utillinux }: +{ stdenv, fetchFromGitHub, boost, cmake, cpp-hocon, curl, leatherman, libwhereami, libyamlcpp, openssl, ruby, utillinux }: stdenv.mkDerivation rec { name = "facter-${version}"; - version = "3.7.1"; + version = "3.9.0"; src = fetchFromGitHub { - sha256 = "0v5g7qlqqixgvc2hf9440a8sfh8jvgzynwk5ipcb505hi00ddq7a"; + sha256 = "1picxrmvka57ph4zqgwqdsqvz3mqppg41wkj8dx37hscwwlbdw0s"; rev = version; repo = "facter"; owner = "puppetlabs"; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { # since we cant expand $out in cmakeFlags preConfigure = "cmakeFlags+=\" -DRUBY_LIB_INSTALL=$out/lib/ruby\""; - buildInputs = [ boost cmake cpp-hocon curl leatherman libyamlcpp openssl ruby utillinux ]; + buildInputs = [ boost cmake cpp-hocon curl leatherman libwhereami libyamlcpp openssl ruby utillinux ]; enableParallelBuilding = true; diff --git a/pkgs/tools/system/lshw/default.nix b/pkgs/tools/system/lshw/default.nix index dc5b75b0f4a2..a26237bc045b 100644 --- a/pkgs/tools/system/lshw/default.nix +++ b/pkgs/tools/system/lshw/default.nix @@ -19,6 +19,12 @@ stdenv.mkDerivation rec { sha256 = "147wyr5m185f8swsmb4q1ahs9r1rycapbpa2548aqbv298bbish3"; })]; + # Fix version info. + preConfigure = '' + sed -e "s/return \"unknown\"/return \"${version}\"/" \ + -i src/core/version.cc + ''; + buildInputs = lib.optionals withGUI [ gtk2 pkgconfig sqlite ]; makeFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/tools/system/proot/default.nix b/pkgs/tools/system/proot/default.nix index 5d65267311f4..640750b4f2d3 100644 --- a/pkgs/tools/system/proot/default.nix +++ b/pkgs/tools/system/proot/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, talloc, docutils +{ stdenv, fetchFromGitHub, fetchpatch +, talloc, docutils , enableStatic ? false }: stdenv.mkDerivation rec { @@ -17,6 +18,13 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + patches = [ + (fetchpatch { # debian patch for aarch64 build + sha256 = "18milpzjkbfy5ab789ia3m4pyjyr9mfzbw6kbjhkj4vx9jc39svv"; + url = "https://sources.debian.net/data/main/p/proot/5.1.0-1.2/debian/patches/arm64.patch"; + }) + ]; + preBuild = stdenv.lib.optionalString enableStatic '' export LDFLAGS="-static" ''; @@ -38,6 +46,6 @@ stdenv.mkDerivation rec { description = "User-space implementation of chroot, mount --bind and binfmt_misc"; platforms = platforms.linux; license = licenses.gpl2; - maintainers = with maintainers; [ ianwookim nckx ]; + maintainers = with maintainers; [ ianwookim nckx makefu ]; }; } diff --git a/pkgs/tools/text/opencc/default.nix b/pkgs/tools/text/opencc/default.nix index 62206c6c7914..a2a02049d267 100644 --- a/pkgs/tools/text/opencc/default.nix +++ b/pkgs/tools/text/opencc/default.nix @@ -9,10 +9,14 @@ stdenv.mkDerivation { buildInputs = [ cmake python ]; - cmakeFlags = [ - "-DBUILD_SHARED_LIBS=OFF" + makeFlags = [ + # let intermediate tools find intermediate library + "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$(CURDIR)/src" ]; + # Parallel building occasionaly fails with: Error copying file "/tmp/nix-build-opencc-1.0.5.drv-0/OpenCC-ver.1.0.5/build/src/libopencc.so.1.0.0" to "/tmp/nix-build-opencc-1.0.5.drv-0/OpenCC-ver.1.0.5/build/src/tools". + enableParallelBuilding = false; + meta = with stdenv.lib; { homepage = https://github.com/BYVoid/OpenCC; license = licenses.asl20; @@ -23,7 +27,7 @@ stdenv.mkDerivation { phrase-level conversion, variant conversion and regional idioms among Mainland China, Taiwan and Hong kong. ''; - maintainers = [ maintainers.mingchuan ]; + maintainers = [ maintainers.sifmelcara ]; platforms = platforms.linux; }; } diff --git a/pkgs/tools/text/peco/default.nix b/pkgs/tools/text/peco/default.nix index a58cb87d1db1..9f181094ea00 100644 --- a/pkgs/tools/text/peco/default.nix +++ b/pkgs/tools/text/peco/default.nix @@ -1,56 +1,20 @@ -{ stdenv, go, fetchgit }: +{ stdenv, buildGoPackage, fetchFromGitHub }: -let - go-flags = fetchgit { - url = "git://github.com/jessevdk/go-flags"; - rev = "ef51ed2000ee1721c7153e958511907b844b4a9c"; - sha256 = "1abzc7ksglicaz6g6nry006vwvflsidvyzyig85pi3p852z6sc2j"; - }; - go-runewidth = fetchgit { - url = "git://github.com/mattn/go-runewidth"; - rev = "63c378b851290989b19ca955468386485f118c65"; - sha256 = "1z5mhfrpqdssn3603vwd95w69z28igwq96lh7b9rrdcx440i822d"; - }; - termbox-go = fetchgit { - url = "git://github.com/nsf/termbox-go"; - rev = "bb19a81afd4bc2729799d1fedb19f7bd7ee284cf"; - sha256 = "1zc8pb594l16yipis6xg2ra84bg315p63wqxa5abyam1y0333sn0"; - }; -in stdenv.mkDerivation rec { +buildGoPackage rec { name = "peco-${version}"; - version = "0.2.10"; - - src = fetchgit { - url = "git://github.com/peco/peco"; - rev = "4952013023ae1d92c10d826e6970c5a68959678d"; - sha256 = "15blxy6a9ph6hm5wn14p025qidbspjy6hhmp4zbbgpxx2l1x8fpg"; - }; - - buildInputs = [ go ]; + version = "0.5.1"; - sourceRoot = "."; + goPackagePath = "github.com/peco/peco"; + subPackages = [ "cmd/peco" ]; - buildPhase = '' - mkdir -p src/github.com/jessevdk/go-flags/ - ln -s ${go-flags}/* src/github.com/jessevdk/go-flags - - mkdir -p src/github.com/mattn/go-runewidth/ - ln -s ${go-runewidth}/* src/github.com/mattn/go-runewidth - - mkdir -p src/github.com/nsf/termbox-go/ - ln -s ${termbox-go}/* src/github.com/nsf/termbox-go - - mkdir -p src/github.com/peco/peco - ln -s ${src}/* src/github.com/peco/peco - - export GOPATH=$PWD - go build -v -o peco src/github.com/peco/peco/cmd/peco/peco.go - ''; # */ + src = fetchFromGitHub { + owner = "peco"; + repo = "peco"; + rev = "v${version}"; + sha256 = "0jnlpr3nxx8xmjb6w4jlwshzz0p9hlww9919qbkm66afv16k0vm8"; + }; - installPhase = '' - ensureDir $out/bin - cp peco $out/bin - ''; + goDeps = ./deps.nix; meta = with stdenv.lib; { description = "Simplistic interactive filtering tool"; diff --git a/pkgs/tools/text/peco/deps.nix b/pkgs/tools/text/peco/deps.nix new file mode 100644 index 000000000000..1b884ef995e8 --- /dev/null +++ b/pkgs/tools/text/peco/deps.nix @@ -0,0 +1,57 @@ +# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 +[ + { + goPackagePath = "github.com/google/btree"; + fetch = { + type = "git"; + url = "https://github.com/google/btree"; + rev = "0c3044bc8bada22db67b93f5760fe3f05d6a5c25"; + sha256 = "05rdnf2c9r0yicg17zsq58i0sm32p0lk8zdnb7nhr0v5hqldvps4"; + }; + } + { + goPackagePath = "github.com/jessevdk/go-flags"; + fetch = { + type = "git"; + url = "https://github.com/jessevdk/go-flags"; + rev = "8bc97d602c3bfeb5fc6fc9b5a9c898f245495637"; + sha256 = "1h3il3ycgd54flbyqys4hm4gzx1lyn5ja1k79f2y7zbs6y0mf1lz"; + }; + } + { + goPackagePath = "github.com/lestrrat/go-pdebug"; + fetch = { + type = "git"; + url = "https://github.com/lestrrat/go-pdebug"; + rev = "2e6eaaa5717f81bda41d27070d3c966f40a1e75f"; + sha256 = "05dx1f1yln47nazyi50zix82xbnyva3hily4gh5gaz021h01npax"; + }; + } + { + goPackagePath = "github.com/mattn/go-runewidth"; + fetch = { + type = "git"; + url = "https://github.com/mattn/go-runewidth"; + rev = "737072b4e32b7a5018b4a7125da8d12de90e8045"; + sha256 = "09ni8bmj6p2b774bdh6mfcxl03bh5sqk860z03xpb6hv6yfxqkjm"; + }; + } + { + goPackagePath = "github.com/nsf/termbox-go"; + fetch = { + type = "git"; + url = "https://github.com/nsf/termbox-go"; + rev = "abe82ce5fb7a42fbd6784a5ceb71aff977e09ed8"; + sha256 = "156i8apkga8b3272kjhapyqwspgcfkrr9kpqwc5lii43k4swghpv"; + }; + } + { + goPackagePath = "github.com/pkg/errors"; + fetch = { + type = "git"; + url = "https://github.com/pkg/errors"; + rev = "248dadf4e9068a0b3e79f02ed0a610d935de5302"; + sha256 = "03l80r0i9bxl0vz363w62k4a8apzglgbrz6viwym3044sxkl1qks"; + }; + } +] diff --git a/pkgs/tools/text/rpl/default.nix b/pkgs/tools/text/rpl/default.nix new file mode 100644 index 000000000000..bdbc97124433 --- /dev/null +++ b/pkgs/tools/text/rpl/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchFromGitHub, pythonPackages }: + +pythonPackages.buildPythonApplication rec { + name = "${pname}-${version}"; + pname = "rpl"; + version = "1.5.7"; + + # Tests not included in pip package. + doCheck = false; + + src = fetchFromGitHub { + owner = "kcoyner"; + repo = "rpl"; + rev = "v${version}"; + sha256 = "1xhpgcmq91ivy9ijfyz5ilg51m7fz8ar2077r7gq246j8gbf8ggr"; + }; + + meta = with stdenv.lib; { + description = "Replace strings in files"; + homepage = "https://github.com/kcoyner/rpl"; + license = licenses.gpl2; + maintainers = with maintainers; [ teto ]; + }; +} diff --git a/pkgs/tools/typesetting/djvu2pdf/default.nix b/pkgs/tools/typesetting/djvu2pdf/default.nix index ce8a60dca869..eb560003a2cb 100644 --- a/pkgs/tools/typesetting/djvu2pdf/default.nix +++ b/pkgs/tools/typesetting/djvu2pdf/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "Creates djvu files from PDF files"; + description = "Convert DjVu files to PDF files"; homepage = http://0x2a.at/s/projects/djvu2pdf; license = stdenv.lib.licenses.gpl2; platforms = stdenv.lib.platforms.all; diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index 4fafdfb726cb..9de635058317 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -25,7 +25,7 @@ in mapAliases (rec { accounts-qt = libsForQt5.accounts-qt; # added 2015-12-19 - adobeReader = adobe-reader; + adobeReader = adobe-reader; # added 2013-11-04 aircrackng = aircrack-ng; # added 2016-01-14 ammonite-repl = ammonite; # added 2017-05-02 arduino_core = arduino-core; # added 2015-02-04 @@ -69,6 +69,7 @@ mapAliases (rec { guileCairo = guile-cairo; # added 2017-09-24 guileGnome = guile-gnome; # added 2017-09-24 guile_lib = guile-lib; # added 2017-09-24 + guileLint = guile-lint; # added 2017-09-27 guile_ncurses = guile-ncurses; # added 2017-09-24 gupnptools = gupnp-tools; # added 2015-12-19 gnustep-make = gnustep.make; # added 2016-7-6 @@ -116,6 +117,7 @@ mapAliases (rec { pidgin-with-plugins = pidgin; # added 2016-06 pidginlatexSF = pidginlatex; # added 2014-11-02 poppler_qt5 = libsForQt5.poppler; # added 2015-12-19 + PPSSPP = ppsspp; # added 2017-10-01 prometheus-statsd-bridge = prometheus-statsd-exporter; # added 2017-08-27 qca-qt5 = libsForQt5.qca-qt5; # added 2015-12-19 QmidiNet = qmidinet; # added 2016-05-22 @@ -125,6 +127,7 @@ mapAliases (rec { qwt6 = libsForQt5.qwt; # added 2015-12-19 rdiff_backup = rdiff-backup; # added 2014-11-23 rdmd = dtools; # added 2017-08-19 + robomongo = robo3t; #added 2017-09-28 rssglx = rss-glx; #added 2015-03-25 rubygems = throw "deprecated 2016-03-02: rubygems is now bundled with ruby"; rustUnstable = rustNightly; # added 2016-11-29 diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 751aaf73216b..f232f8acfcf8 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -55,6 +55,13 @@ with pkgs; stringsWithDeps = lib.stringsWithDeps; + ### Evaluating the entire Nixpkgs naively will fail, make failure fast + AAAAAASomeThingsFailToEvaluate = throw '' + Please be informed that this pseudo-package is not the only part of + Nixpkgs that fails to evaluate. You should not evaluate entire Nixpkgs + without some special measures to handle failing packages, like those taken + by Hydra. + ''; ### Nixpkgs maintainer tools @@ -198,19 +205,10 @@ with pkgs; baseUrl = "https://${githubBase}/${owner}/${repo}"; passthruAttrs = removeAttrs args [ "owner" "repo" "rev" "fetchSubmodules" "private" "githubBase" "varPrefix" ]; varBase = "NIX${if varPrefix == null then "" else "_${varPrefix}"}_GITHUB_PRIVATE_"; - in if fetchSubmodules then - fetchgit ({ - inherit name rev fetchSubmodules; - url = "${baseUrl}.git"; - } // passthruAttrs) - else # We prefer fetchzip in cases we don't need submodules as the hash # is more stable in that case. - fetchzip ({ - inherit name; - url = "${baseUrl}/archive/${rev}.tar.gz"; - meta.homepage = "${baseUrl}/"; - } // lib.optionalAttrs private { + fetcher = if fetchSubmodules then fetchgit else fetchzip; + privateAttrs = lib.optionalAttrs private { netrcPhase = '' if [ -z "''$${varBase}USERNAME" -o -z "''$${varBase}PASSWORD" ]; then echo "Error: Private fetchFromGitHub requires the nix building process (nix-daemon in multi user mode) to have the ${varBase}USERNAME and ${varBase}PASSWORD env vars set." >&2 @@ -223,7 +221,12 @@ with pkgs; EOF ''; netrcImpureEnvVars = [ "${varBase}USERNAME" "${varBase}PASSWORD" ]; - } // passthruAttrs) // { inherit rev; }; + }; + fetcherArgs = (if fetchSubmodules + then { inherit rev fetchSubmodules; url = "${baseUrl}.git"; } + else ({ url = "${baseUrl}/archive/${rev}.tar.gz"; } // privateAttrs) + ) // passthruAttrs // { inherit name; }; + in fetcher fetcherArgs // { meta.homepage = baseUrl; inherit rev; }; fetchFromBitbucket = { owner, repo, rev, name ? gitRepoToName repo rev, @@ -557,6 +560,8 @@ with pkgs; bonnie = callPackage ../tools/filesystems/bonnie { }; + bonfire = callPackage ../tools/misc/bonfire { }; + container-linux-config-transpiler = callPackage ../development/tools/container-linux-config-transpiler { }; djmount = callPackage ../tools/filesystems/djmount { }; @@ -672,13 +677,20 @@ with pkgs; libssl = openssl; }; + axoloti = callPackage ../applications/audio/axoloti { }; + dfu-util-axoloti = callPackage ../applications/audio/axoloti/dfu-util.nix { }; + libusb1-axoloti = callPackage ../applications/audio/axoloti/libusb1.nix { + inherit (darwin) libobjc; + inherit (darwin.apple_sdk.frameworks) IOKit; + }; + azureus = callPackage ../tools/networking/p2p/azureus { }; backblaze-b2 = callPackage ../development/tools/backblaze-b2 { }; backup = callPackage ../tools/backup/backup { }; - base16 = callPackage ../misc/base16 { }; + base16-builder = callPackage ../misc/base16-builder { }; basex = callPackage ../tools/text/xml/basex { }; @@ -939,6 +951,8 @@ with pkgs; deisctl = callPackage ../development/tools/deisctl {}; + deja-dup = callPackage ../applications/backup/deja-dup { }; + devmem2 = callPackage ../os-specific/linux/devmem2 { }; dbus-broker = callPackage ../os-specific/linux/dbus-broker {}; @@ -1152,6 +1166,8 @@ with pkgs; stagit = callPackage ../development/tools/stagit { }; + bash-supergenpass = callPackage ../tools/security/bash-supergenpass { }; + syscall_limiter = callPackage ../os-specific/linux/syscall_limiter {}; syslogng = callPackage ../tools/system/syslog-ng { }; @@ -1873,7 +1889,9 @@ with pkgs; entr = callPackage ../tools/misc/entr { }; - envoy = callPackage ../tools/networking/envoy { }; + envoy = callPackage ../tools/networking/envoy { + bazel = bazel_0_4; + }; eot_utilities = callPackage ../tools/misc/eot-utilities { }; @@ -1881,6 +1899,8 @@ with pkgs; epstool = callPackage ../tools/graphics/epstool { }; + epsxe = callPackage ../misc/emulators/epsxe { }; + ethtool = callPackage ../tools/misc/ethtool { }; ettercap = callPackage ../applications/networking/sniffers/ettercap { }; @@ -1944,6 +1964,8 @@ with pkgs; unikey = callPackage ../tools/inputmethods/fcitx-engines/fcitx-unikey { }; + rime = callPackage ../tools/inputmethods/fcitx-engines/fcitx-rime { }; + m17n = callPackage ../tools/inputmethods/fcitx-engines/fcitx-m17n { }; mozc = callPackage ../tools/inputmethods/fcitx-engines/fcitx-mozc rec { @@ -2020,6 +2042,8 @@ with pkgs; lprof = callPackage ../tools/graphics/lprof { }; + fastlane = callPackage ../tools/admin/fastlane { }; + fatresize = callPackage ../tools/filesystems/fatresize {}; fdk_aac = callPackage ../development/libraries/fdk-aac { }; @@ -2288,6 +2312,8 @@ with pkgs; godot = callPackage ../development/tools/godot {}; + goklp = callPackage ../tools/networking/goklp {}; + go-mtpfs = callPackage ../tools/filesystems/go-mtpfs { }; go-pup = callPackage ../development/tools/pup { }; @@ -2466,6 +2492,8 @@ with pkgs; pgjwt = callPackage ../servers/sql/postgresql/pgjwt {}; + pgtap = callPackage ../servers/sql/postgresql/pgtap {}; + pigz = callPackage ../tools/compression/pigz { }; pixz = callPackage ../tools/compression/pixz { }; @@ -2688,6 +2716,7 @@ with pkgs; iperf = iperf3; ipfs = callPackage ../applications/networking/ipfs { }; + ipfs-migrator = callPackage ../applications/networking/ipfs-migrator { }; ipmitool = callPackage ../tools/system/ipmitool { static = false; @@ -2819,6 +2848,8 @@ with pkgs; knockknock = callPackage ../tools/security/knockknock { }; + kore = callPackage ../development/web/kore { }; + partition-manager = libsForQt5.callPackage ../tools/misc/partition-manager { }; kpcli = callPackage ../tools/security/kpcli { }; @@ -3256,7 +3287,9 @@ with pkgs; mednafen-server = callPackage ../misc/emulators/mednafen/server.nix { }; - mednaffe = callPackage ../misc/emulators/mednaffe/default.nix { }; + mednaffe = callPackage ../misc/emulators/mednaffe/default.nix { + gtk2 = null; + }; megacli = callPackage ../tools/misc/megacli { }; @@ -3862,6 +3895,10 @@ with pkgs; gtk2 = null; }; + pinentry_gnome = pinentry_ncurses.override { + gcr = gnome3.gcr; + }; + pinentry_qt4 = pinentry_ncurses.override { inherit qt4; }; @@ -4175,6 +4212,8 @@ with pkgs; rnv = callPackage ../tools/text/xml/rnv { }; + routino = callPackage ../tools/misc/routino { }; + rq = callPackage ../development/tools/rq { v8 = v8_static; }; @@ -4189,7 +4228,7 @@ with pkgs; rockbox_utility = libsForQt5.callPackage ../tools/misc/rockbox-utility { }; - rosegarden = callPackage ../applications/audio/rosegarden { }; + rosegarden = libsForQt5.callPackage ../applications/audio/rosegarden { }; rowhammer-test = callPackage ../tools/system/rowhammer-test { }; @@ -4634,6 +4673,12 @@ with pkgs; tor-browser-bundle-bin = callPackage ../applications/networking/browsers/tor-browser-bundle-bin { }; + tor-browser-bundle = callPackage ../applications/networking/browsers/tor-browser-bundle { + stdenv = stdenvNoCC; + tor-browser-unwrapped = firefoxPackages.tor-browser; + inherit (python27Packages) obfsproxy; + }; + touchegg = callPackage ../tools/inputmethods/touchegg { }; torsocks = callPackage ../tools/security/tor/torsocks.nix { }; @@ -4735,6 +4780,8 @@ with pkgs; upx = callPackage ../tools/compression/upx { }; + uqmi = callPackage ../tools/networking/uqmi { }; + uriparser = callPackage ../development/libraries/uriparser {}; urlscan = callPackage ../applications/misc/urlscan { }; @@ -4763,6 +4810,8 @@ with pkgs; inherit (perlPackages) ShellCommand TestMost; }; + vcstool = callPackage ../development/tools/vcstool { }; + verilator = callPackage ../applications/science/electronics/verilator {}; verilog = callPackage ../applications/science/electronics/verilog {}; @@ -5148,6 +5197,8 @@ with pkgs; xwinmosaic = callPackage ../tools/X11/xwinmosaic {}; + xwinwrap = callPackage ../tools/X11/xwinwrap {}; + yaft = callPackage ../applications/misc/yaft { }; yarn = callPackage ../development/tools/yarn { }; @@ -5318,6 +5369,7 @@ with pkgs; useMacosReexportHack = true; }; + clang_5 = llvmPackages_5.clang; clang_4 = llvmPackages_4.clang; clang_39 = llvmPackages_39.clang; clang_38 = llvmPackages_38.clang; @@ -5375,7 +5427,9 @@ with pkgs; ''; }); - crystal = callPackage ../development/compilers/crystal { }; + crystal = callPackage ../development/compilers/crystal { + llvm = llvm_4; + }; devpi-client = callPackage ../development/tools/devpi-client {}; @@ -5635,10 +5689,9 @@ with pkgs; emacsSupport = config.emacsSupport or false; }; - gccgo = gccgo49; - - gccgo49 = wrapCC (gcc49.cc.override { - name = "gccgo49"; + gccgo = gccgo6; + gccgo6 = wrapCC (gcc6.cc.override { + name = "gccgo6"; langCC = true; #required for go. langC = true; langGo = true; @@ -5884,12 +5937,18 @@ with pkgs; oraclejdk8psu = pkgs.oraclejdk8psu_distro true false; + oraclejdk9 = pkgs.oraclejdk9distro "JDK" false; + oraclejre = lowPrio (pkgs.jdkdistro false false); oraclejre8 = lowPrio (pkgs.oraclejdk8distro false false); oraclejre8psu = lowPrio (pkgs.oraclejdk8psu_distro false false); + oraclejre9 = lowPrio (pkgs.oraclejdk9distro "JRE" false); + + oracleserverjre9 = lowPrio (pkgs.oraclejdk9distro "ServerJRE" false); + jrePlugin = jre8Plugin; jre8Plugin = lowPrio (pkgs.oraclejdk8distro false true); @@ -5904,12 +5963,17 @@ with pkgs; oraclejdk8distro = installjdk: pluginSupport: assert supportsJDK; (if pluginSupport then appendToName "with-plugin" else x: x) - (callPackage ../development/compilers/oraclejdk/jdk8cpu-linux.nix { inherit installjdk; }); + (callPackage ../development/compilers/oraclejdk/jdk8cpu-linux.nix { inherit installjdk pluginSupport; }); oraclejdk8psu_distro = installjdk: pluginSupport: assert supportsJDK; (if pluginSupport then appendToName "with-plugin" else x: x) - (callPackage ../development/compilers/oraclejdk/jdk8psu-linux.nix { inherit installjdk; }); + (callPackage ../development/compilers/oraclejdk/jdk8psu-linux.nix { inherit installjdk pluginSupport; }); + + oraclejdk9distro = packageType: pluginSupport: + assert supportsJDK; + (if pluginSupport then appendToName "with-plugin" else x: x) + (callPackage ../development/compilers/oraclejdk/jdk9-linux.nix { inherit packageType pluginSupport; }); jikes = callPackage ../development/compilers/jikes { }; @@ -5955,13 +6019,17 @@ with pkgs; lizardfs = callPackage ../tools/filesystems/lizardfs { }; - lld = llvmPackages_4.lld; + lld = llvmPackages.lld; + lld_4 = llvmPackages_4.lld; + lld_5 = llvmPackages_5.lld; lldb = llvmPackages.lldb; lldb_4 = llvmPackages_4.lldb; + lldb_5 = llvmPackages_5.lldb; llvm = llvmPackages.llvm; + llvm_5 = llvmPackages_5.llvm; llvm_4 = llvmPackages_4.llvm; llvm_39 = llvmPackages_39.llvm; llvm_38 = llvmPackages_38.llvm; @@ -6003,6 +6071,10 @@ with pkgs; python2 = callPackage ../development/interpreters/python/cpython/2.7/boot.nix { inherit (darwin) CF configd; }; }); + llvmPackages_5 = callPackage ../development/compilers/llvm/5 { + inherit (stdenvAdapters) overrideCC; + }; + manticore = callPackage ../development/compilers/manticore { }; mentorToolchains = recurseIntoAttrs ( @@ -6236,6 +6308,7 @@ with pkgs; vala_0_28 vala_0_32 vala_0_34 + vala_0_38 vala; valadoc = callPackage ../development/tools/valadoc { }; @@ -6279,8 +6352,9 @@ with pkgs; yosys = callPackage ../development/compilers/yosys { }; - zulu = callPackage ../development/compilers/zulu { }; - + zulu8 = callPackage ../development/compilers/zulu/8.nix { }; + zulu9 = callPackage ../development/compilers/zulu { }; + zulu = zulu9; ### DEVELOPMENT / INTERPRETERS @@ -6627,7 +6701,7 @@ with pkgs; ruby_2_0_0 ruby_2_1_10 ruby_2_2_7 - ruby_2_3_4 + ruby_2_3_5 ruby_2_4_2; # Ruby aliases @@ -6635,7 +6709,7 @@ with pkgs; ruby_2_0 = ruby_2_0_0; ruby_2_1 = ruby_2_1_10; ruby_2_2 = ruby_2_2_7; - ruby_2_3 = ruby_2_3_4; + ruby_2_3 = ruby_2_3_5; ruby_2_4 = ruby_2_4_2; scsh = callPackage ../development/interpreters/scsh { }; @@ -6712,16 +6786,21 @@ with pkgs; jython = callPackage ../development/interpreters/jython {}; - guile-cairo = callPackage ../development/guile-modules/guile-cairo { }; + guile-cairo = callPackage ../development/guile-modules/guile-cairo { + guile = guile_2_0; + }; guile-fibers = callPackage ../development/guile-modules/guile-fibers { }; guile-gnome = callPackage ../development/guile-modules/guile-gnome { gconf = gnome2.GConf; + guile = guile_2_0; inherit (gnome2) gnome_vfs libglade libgnome libgnomecanvas libgnomeui; }; - guile-lib = callPackage ../development/guile-modules/guile-lib { }; + guile-lib = callPackage ../development/guile-modules/guile-lib { + guile = guile_2_0; + }; guile-ncurses = callPackage ../development/guile-modules/guile-ncurses { }; @@ -6731,7 +6810,9 @@ with pkgs; guile-sdl2 = callPackage ../development/guile-modules/guile-sdl2 { }; - guile-xcb = callPackage ../development/guile-modules/guile-xcb { }; + guile-xcb = callPackage ../development/guile-modules/guile-xcb { + guile = guile_2_0; + }; pharo-vms = callPackage ../development/pharo/vm { }; pharo = pharo-vms.multi-vm-wrapper; @@ -6824,7 +6905,9 @@ with pkgs; bam = callPackage ../development/tools/build-managers/bam {}; - bazel = callPackage ../development/tools/build-managers/bazel { }; + bazel_0_4 = callPackage ../development/tools/build-managers/bazel/0.4.nix { }; + bazel_0_5 = callPackage ../development/tools/build-managers/bazel { }; + bazel = bazel_0_5; bear = callPackage ../development/tools/build-managers/bear { }; @@ -7017,6 +7100,8 @@ with pkgs; dejagnu = callPackage ../development/tools/misc/dejagnu { }; + devtodo = callPackage ../development/tools/devtodo { }; + dfeet = callPackage ../development/tools/misc/d-feet { }; dfu-programmer = callPackage ../development/tools/misc/dfu-programmer { }; @@ -7167,9 +7252,13 @@ with pkgs; gtkdialog = callPackage ../development/tools/misc/gtkdialog { }; - guileLint = callPackage ../development/tools/guile/guile-lint { }; + guile-lint = callPackage ../development/tools/guile/guile-lint { + guile = guile_1_8; + }; - gwrap = callPackage ../development/tools/guile/g-wrap { }; + gwrap = callPackage ../development/tools/guile/g-wrap { + guile = guile_2_0; + }; help2man = callPackage ../development/tools/misc/help2man { inherit (perlPackages) LocaleGettext; @@ -7217,6 +7306,8 @@ with pkgs; jenkins-job-builder = pythonPackages.jenkins-job-builder; + kafkacat = callPackage ../development/tools/kafkacat { }; + kati = callPackage ../development/tools/build-managers/kati { }; kconfig-frontends = callPackage ../development/tools/misc/kconfig-frontends { @@ -7268,6 +7359,8 @@ with pkgs; mk = callPackage ../development/tools/build-managers/mk { }; + mkdocs = callPackage ../development/tools/documentation/mkdocs { }; + moby = callPackage ../development/tools/misc/moby { }; msgpack-tools = callPackage ../development/tools/msgpack-tools { }; @@ -7541,7 +7634,7 @@ with pkgs; universal-ctags = callPackage ../development/tools/misc/universal-ctags { }; vagrant = callPackage ../development/tools/vagrant { - ruby = ruby_2_2; + ruby = ruby_2_3; }; bashdb = callPackage ../development/tools/misc/bashdb { }; @@ -9123,6 +9216,8 @@ with pkgs; libnfc = callPackage ../development/libraries/libnfc { }; + libnfs = callPackage ../development/libraries/libnfs { }; + libnfsidmap = callPackage ../development/libraries/libnfsidmap { }; libnice = callPackage ../development/libraries/libnice { }; @@ -9146,6 +9241,8 @@ with pkgs; librevisa = callPackage ../development/libraries/librevisa { }; + librime = callPackage ../development/libraries/librime {}; + libsamplerate = callPackage ../development/libraries/libsamplerate { inherit (darwin.apple_sdk.frameworks) ApplicationServices Carbon CoreServices; }; @@ -9259,6 +9356,8 @@ with pkgs; libminc = callPackage ../development/libraries/libminc { }; + libmirage = callPackage ../misc/emulators/cdemu/libmirage.nix { }; + libmkv = callPackage ../development/libraries/libmkv { }; libmms = callPackage ../development/libraries/libmms { }; @@ -9470,6 +9569,8 @@ with pkgs; libu2f-server = callPackage ../development/libraries/libu2f-server { }; + libubox = callPackage ../development/libraries/libubox { }; + libuecc = callPackage ../development/libraries/libuecc { }; libui = callPackage ../development/libraries/libui { }; @@ -9480,6 +9581,8 @@ with pkgs; libupnp = callPackage ../development/libraries/pupnp { }; + libwhereami = callPackage ../development/libraries/libwhereami { }; + giflib = giflib_5_1; giflib_4_1 = callPackage ../development/libraries/giflib/4.1.nix { }; giflib_5_0 = callPackage ../development/libraries/giflib/5.0.nix { }; @@ -9670,6 +9773,8 @@ with pkgs; mapnik = callPackage ../development/libraries/mapnik { }; + marisa = callPackage ../development/libraries/marisa {}; + matio = callPackage ../development/libraries/matio { }; mbedtls = callPackage ../development/libraries/mbedtls { }; @@ -9882,17 +9987,9 @@ with pkgs; openbabel = callPackage ../development/libraries/openbabel { }; - opencascade = callPackage ../development/libraries/opencascade { - tcl = tcl-8_5; - tk = tk-8_5; - }; - - opencascade_6_5 = callPackage ../development/libraries/opencascade/6.5.nix { - automake = automake111x; - ftgl = ftgl212; - }; + opencascade = callPackage ../development/libraries/opencascade { }; - opencascade_oce = callPackage ../development/libraries/opencascade/oce.nix { }; + opencascade_oce = opencascade; opencl-headers = callPackage ../development/libraries/opencl-headers { }; @@ -10223,8 +10320,14 @@ with pkgs; kirigami_1 kirigami_2; + kdb = callPackage ../development/libraries/kdb { }; + kdiagram = callPackage ../development/libraries/kdiagram { }; + kproperty = callPackage ../development/libraries/kproperty { }; + + kreport = callPackage ../development/libraries/kreport { }; + kirigami = kirigami_1; libcommuni = callPackage ../development/libraries/libcommuni { }; @@ -10383,8 +10486,8 @@ with pkgs; resolv_wrapper = callPackage ../development/libraries/resolv_wrapper { }; rhino = callPackage ../development/libraries/java/rhino { - javac = gcj; - jvm = gcj; + javac = jdk; + jvm = jre; }; rlog = callPackage ../development/libraries/rlog { }; @@ -10685,6 +10788,8 @@ with pkgs; tremor = callPackage ../development/libraries/tremor { }; + twolame = callPackage ../development/libraries/twolame { }; + udns = callPackage ../development/libraries/udns { }; uid_wrapper = callPackage ../development/libraries/uid_wrapper { }; @@ -11099,7 +11204,11 @@ with pkgs; go = go_1_8; }; - buildGoPackage = buildGo18Package; + buildGo19Package = callPackage ../development/go-modules/generic { + go = go_1_9; + }; + + buildGoPackage = buildGo19Package; go2nix = callPackage ../development/tools/go2nix { }; @@ -11359,7 +11468,7 @@ with pkgs; fingerd_bsd = callPackage ../servers/fingerd/bsd-fingerd { }; firebird = callPackage ../servers/firebird { icu = null; stdenv = overrideCC stdenv gcc5; }; - firebirdSuper = callPackage ../servers/firebird { superServer = true; }; + firebirdSuper = callPackage ../servers/firebird { superServer = true; stdenv = overrideCC stdenv gcc5; }; fleet = callPackage ../servers/fleet { }; @@ -11638,7 +11747,8 @@ with pkgs; oracleXE = callPackage ../servers/sql/oracle-xe { }; softether_4_18 = callPackage ../servers/softether/4.18.nix { }; - softether = softether_4_18; + softether_4_20 = callPackage ../servers/softether/4.20.nix { }; + softether = softether_4_20; qboot = callPackage ../applications/virtualization/qboot { stdenv = stdenv_32bit; }; @@ -11660,7 +11770,7 @@ with pkgs; libmemcached = null; # Detection is broken upstream }; - postgresql = postgresql95; + postgresql = postgresql96; inherit (callPackages ../servers/sql/postgresql { }) postgresql93 @@ -11986,7 +12096,10 @@ with pkgs; cifs-utils = callPackage ../os-specific/linux/cifs-utils { }; - cockroachdb = callPackage ../servers/sql/cockroachdb { }; + cockroachdb = callPackage ../servers/sql/cockroachdb { + # Go 1.9 build fails with "go1.8.* required (see CONTRIBUTING.md)". + buildGoPackage = buildGo18Package; + }; conky = callPackage ../os-specific/linux/conky ({ lua = lua5_1; # conky can use 5.2, but toluapp can not @@ -12273,22 +12386,6 @@ with pkgs; ]; }; - linux_4_12 = callPackage ../os-specific/linux/kernel/linux-4.12.nix { - kernelPatches = - [ kernelPatches.bridge_stp_helper - kernelPatches.p9_fixes - # See pkgs/os-specific/linux/kernel/cpu-cgroup-v2-patches/README.md - # when adding a new linux version - kernelPatches.cpu-cgroup-v2."4.11" - kernelPatches.modinst_arg_list_too_long - ] - ++ lib.optionals ((platform.kernelArch or null) == "mips") - [ kernelPatches.mips_fpureg_emu - kernelPatches.mips_fpu_sigill - kernelPatches.mips_ext3_n32 - ]; - }; - linux_4_13 = callPackage ../os-specific/linux/kernel/linux-4.13.nix { kernelPatches = [ kernelPatches.bridge_stp_helper @@ -12498,7 +12595,6 @@ with pkgs; linuxPackages_mptcp = linuxPackagesFor pkgs.linux_mptcp; linuxPackages_rpi = linuxPackagesFor pkgs.linux_rpi; linuxPackages_4_9 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_9); - linuxPackages_4_12 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_12); linuxPackages_4_13 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_13); # Don't forget to update linuxPackages_latest! @@ -13016,6 +13112,8 @@ with pkgs; bgnet = callPackage ../data/documentation/bgnet { }; + brise = callPackage ../data/misc/brise { }; + inherit (kdeFrameworks) breeze-icons; cacert = callPackage ../data/misc/cacert { }; @@ -13170,6 +13268,8 @@ with pkgs; kochi-substitute-naga10 = callPackage ../data/fonts/kochi-substitute-naga10 {}; + latinmodern-math = callPackage ../data/fonts/lm-math {}; + lato = callPackage ../data/fonts/lato {}; league-of-moveable-type = callPackage ../data/fonts/league-of-moveable-type {}; @@ -13377,6 +13477,14 @@ with pkgs; terminus_font_ttf = callPackage ../data/fonts/terminus-font-ttf { }; + tex-gyre-bonum-math = callPackage ../data/fonts/tex-gyre-math { variant = "bonum"; }; + + tex-gyre-pagella-math = callPackage ../data/fonts/tex-gyre-math { variant = "pagella"; }; + + tex-gyre-schola-math = callPackage ../data/fonts/tex-gyre-math { variant = "schola"; }; + + tex-gyre-termes-math = callPackage ../data/fonts/tex-gyre-math { variant = "termes"; }; + tipa = callPackage ../data/fonts/tipa { }; ttf_bitstream_vera = callPackage ../data/fonts/ttf-bitstream-vera { }; @@ -13580,7 +13688,7 @@ with pkgs; ethrun = self.altcoins.ethrun; seth = self.altcoins.seth; dapp = self.altcoins.dapp; - hsevm = self.altcoins.hsevm; + hevm = self.altcoins.hevm; stellar-core = self.altcoins.stellar-core; @@ -13727,10 +13835,15 @@ with pkgs; calibre = libsForQt5.callPackage ../applications/misc/calibre { }; - calligra = kde4.callPackage ../applications/office/calligra { + calligra2 = kde4.callPackage ../applications/office/calligra/2.nix { vc = vc_0_7; }; + calligra = libsForQt5.callPackage ../applications/office/calligra { + inherit (kdeApplications) akonadi-calendar akonadi-contacts; + openjpeg = openjpeg_1; + }; + camlistore = callPackage ../applications/misc/camlistore { }; canto-curses = callPackage ../applications/networking/feedreaders/canto-curses { }; @@ -13812,6 +13925,8 @@ with pkgs; cloud-print-connector = callPackage ../servers/cloud-print-connector { }; + clp = callPackage ../applications/science/math/clp { }; + cmatrix = callPackage ../applications/misc/cmatrix { }; cmus = callPackage ../applications/audio/cmus { @@ -13953,10 +14068,10 @@ with pkgs; inherit (callPackage ../applications/virtualization/docker { }) docker_17_06 - docker_17_07; + docker_17_09; - docker = docker_17_06; - docker-edge = docker_17_07; + docker = docker_17_09; + docker-edge = docker_17_09; docker-proxy = callPackage ../applications/virtualization/docker/proxy.nix { }; @@ -14022,6 +14137,8 @@ with pkgs; ekho = callPackage ../applications/audio/ekho { }; + electron-cash = callPackage ../applications/misc/electron-cash { }; + electrum = callPackage ../applications/misc/electrum { }; electrum-dash = callPackage ../applications/misc/electrum-dash { }; @@ -14322,7 +14439,7 @@ with pkgs; fmsynth = callPackage ../applications/audio/fmsynth { }; - focuswriter = callPackage ../applications/editors/focuswriter { }; + focuswriter = libsForQt5.callPackage ../applications/editors/focuswriter { }; font-manager = callPackage ../applications/misc/font-manager { }; @@ -14375,6 +14492,10 @@ with pkgs; google-musicmanager = callPackage ../applications/audio/google-musicmanager { }; + googler = callPackage ../applications/misc/googler { + python = python3; + }; + gopher = callPackage ../applications/networking/gopher/gopher { }; gopherclient = libsForQt5.callPackage ../applications/networking/gopher/gopherclient { }; @@ -14387,6 +14508,8 @@ with pkgs; gqrx = qt5.callPackage ../applications/misc/gqrx { }; + gpx-viewer = callPackage ../applications/misc/gpx-viewer { }; + grass = callPackage ../applications/gis/grass { }; grepm = callPackage ../applications/search/grepm { }; @@ -14533,7 +14656,6 @@ with pkgs; freecad = callPackage ../applications/graphics/freecad { boost = boost155; - opencascade = opencascade_oce; }; freemind = callPackage ../applications/misc/freemind { }; @@ -14568,6 +14690,8 @@ with pkgs; gcolor2 = callPackage ../applications/graphics/gcolor2 { }; + gcolor3 = callPackage ../applications/graphics/gcolor3 { }; + get_iplayer = callPackage ../applications/misc/get_iplayer {}; getxbook = callPackage ../applications/misc/getxbook {}; @@ -15083,13 +15207,15 @@ with pkgs; kermit = callPackage ../tools/misc/kermit { }; + kexi = libsForQt5.callPackage ../applications/office/kexi { }; + keyfinder = libsForQt5.callPackage ../applications/audio/keyfinder { }; keyfinder-cli = libsForQt5.callPackage ../applications/audio/keyfinder-cli { }; keymon = callPackage ../applications/video/key-mon { }; - kgraphviewer = kde4.callPackage ../applications/graphics/kgraphviewer { }; + kgraphviewer = libsForQt5.callPackage ../applications/graphics/kgraphviewer { }; khal = callPackage ../applications/misc/khal { }; @@ -15329,7 +15455,7 @@ with pkgs; mercurialFull = appendToName "full" (pkgs.mercurial.override { guiSupport = true; }); - merkaartor = callPackage ../applications/misc/merkaartor { }; + merkaartor = libsForQt5.callPackage ../applications/misc/merkaartor { }; meshlab = callPackage ../applications/graphics/meshlab { }; @@ -15580,7 +15706,9 @@ with pkgs; scudcloud = callPackage ../applications/networking/instant-messengers/scudcloud { }; - shotcut = libsForQt5.callPackage ../applications/video/shotcut { }; + shotcut = libsForQt5.callPackage ../applications/video/shotcut { + libmlt = mlt; + }; smplayer = libsForQt5.callPackage ../applications/video/smplayer { }; @@ -15964,6 +16092,8 @@ with pkgs; qjackctl = libsForQt5.callPackage ../applications/audio/qjackctl { }; + qmapshack = libsForQt5.callPackage ../applications/misc/qmapshack { }; + qmetro = callPackage ../applications/misc/qmetro { }; qmidinet = callPackage ../applications/audio/qmidinet { }; @@ -16036,6 +16166,8 @@ with pkgs; gst-plugins-bad = null; }; + falkon = libsForQt5.callPackage ../applications/networking/browsers/falkon { }; + qutebrowser = libsForQt5.callPackage ../applications/networking/browsers/qutebrowser { inherit (python3Packages) buildPythonApplication pyqt5 jinja2 pygments pyyaml pypeg2 cssutils pyopengl; inherit (gst_all_1) gst-plugins-base gst-plugins-good gst-plugins-bad gst-plugins-ugly gst-libav; @@ -16196,7 +16328,7 @@ with pkgs; shutter = callPackage ../applications/graphics/shutter { }; - simple-scan = callPackage ../applications/graphics/simple-scan { }; + simple-scan = gnome3.simple-scan; siproxd = callPackage ../applications/networking/siproxd { }; @@ -16232,6 +16364,11 @@ with pkgs; ssvnc = callPackage ../applications/networking/remote/ssvnc { }; + stupidterm = callPackage ../applications/misc/stupidterm { + vte = gnome3.vte; + gtk = gtk3; + }; + styx = callPackage ../applications/misc/styx { }; tecoc = callPackage ../applications/editors/tecoc { }; @@ -16539,6 +16676,8 @@ with pkgs; timbreid = callPackage ../applications/audio/pd-plugins/timbreid { }; + timescaledb = callPackage ../servers/sql/postgresql/timescaledb {}; + timewarrior = callPackage ../applications/misc/timewarrior { }; timidity = callPackage ../tools/misc/timidity { }; @@ -16717,6 +16856,8 @@ with pkgs; ocamlPackages = ocamlPackages_4_01_0; }; + virt-what = callPackage ../applications/virtualization/virt-what { }; + virtmanager = callPackage ../applications/virtualization/virt-manager { vte = gnome3.vte; dconf = gnome3.dconf; @@ -17239,6 +17380,8 @@ with pkgs; inherit (pythonPackages) youtube-dl; + youtube-viewer = perlPackages.WWWYoutubeViewer; + zam-plugins = callPackage ../applications/audio/zam-plugins { }; zanshin = libsForQt5.callPackage ../applications/office/zanshin { @@ -18021,6 +18164,8 @@ with pkgs; orion = callPackage ../misc/themes/orion {}; + deepin-gtk-theme = callPackage ../misc/themes/deepin { }; + albatross = callPackage ../misc/themes/albatross { }; gtk_engines = callPackage ../misc/themes/gtk2/gtk-engines { }; @@ -18033,6 +18178,8 @@ with pkgs; numix-gtk-theme = callPackage ../misc/themes/numix { }; + numix-solarized-gtk-theme = callPackage ../misc/themes/gtk3/numix-solarized-gtk-theme { }; + numix-sx-gtk-theme = callPackage ../misc/themes/numix-sx { }; theme-vertex = callPackage ../misc/themes/vertex { }; @@ -18398,6 +18545,9 @@ with pkgs; gfan = callPackage ../applications/science/math/gfan {}; + giac = callPackage ../applications/science/math/giac { }; + giac-with-xcas = giac.override { enableGUI = true; }; + ginac = callPackage ../applications/science/math/ginac { }; glucose = callPackage ../applications/science/logic/glucose { }; @@ -18505,7 +18655,7 @@ with pkgs; eagle = callPackage ../applications/science/electronics/eagle { }; - caneda = callPackage ../applications/science/electronics/caneda { }; + caneda = libsForQt5.callPackage ../applications/science/electronics/caneda { }; geda = callPackage ../applications/science/electronics/geda { guile = guile_2_0; @@ -19008,7 +19158,7 @@ with pkgs; redis-desktop-manager = libsForQt56.callPackage ../applications/misc/redis-desktop-manager { }; - robomongo = callPackage ../applications/misc/robomongo { }; + robo3t = callPackage ../applications/misc/robo3t { }; rucksack = callPackage ../development/tools/rucksack { }; @@ -19040,7 +19190,7 @@ with pkgs; pjsip = callPackage ../applications/networking/pjsip { }; - PPSSPP = callPackage ../misc/emulators/ppsspp { SDL = SDL2; }; + ppsspp = libsForQt5.callPackage ../misc/emulators/ppsspp { }; pt = callPackage ../applications/misc/pt { }; @@ -19064,6 +19214,10 @@ with pkgs; retrofe = callPackage ../misc/emulators/retrofe { }; + rpl = callPackage ../tools/text/rpl { + pythonPackages = python3Packages; + }; + rss-glx = callPackage ../misc/screensavers/rss-glx { }; runit = callPackage ../tools/system/runit { }; @@ -19203,6 +19357,8 @@ with pkgs; utf8proc = callPackage ../development/libraries/utf8proc { }; + unicode-paracode = callPackage ../tools/misc/unicode { }; + valauncher = callPackage ../applications/misc/valauncher { }; vault = callPackage ../tools/security/vault { }; @@ -19504,6 +19660,8 @@ with pkgs; cc-wrapper-libcxx = callPackage ../test/cc-wrapper { stdenv = llvmPackages.libcxxStdenv; }; cc-wrapper-clang-39 = callPackage ../test/cc-wrapper { stdenv = llvmPackages_39.stdenv; }; cc-wrapper-libcxx-39 = callPackage ../test/cc-wrapper { stdenv = llvmPackages_39.libcxxStdenv; }; + cc-wrapper-clang-5 = callPackage ../test/cc-wrapper { stdenv = llvmPackages_5.stdenv; }; + cc-wrapper-libcxx-5 = callPackage ../test/cc-wrapper { stdenv = llvmPackages_5.libcxxStdenv; }; stdenv-inputs = callPackage ../test/stdenv-inputs { }; macOSSierraShared = callPackage ../test/macos-sierra-shared {}; diff --git a/pkgs/top-level/lua-packages.nix b/pkgs/top-level/lua-packages.nix index 98192d2c3d7c..00550df1099f 100644 --- a/pkgs/top-level/lua-packages.nix +++ b/pkgs/top-level/lua-packages.nix @@ -215,6 +215,31 @@ let ''; }; + lua-iconv = buildLuaPackage rec { + name = "lua-iconv-${version}"; + version = "7"; + src = fetchFromGitHub { + owner = "ittner"; + repo = "lua-iconv"; + rev = "e8d34024a6b185a759733915f116cc5588550261"; + sha256 = "0rd76966qlxfp8ypkyrbif76nxnm1acclqwfs45wz3972jsk654i"; + }; + + preBuild = '' + makeFlagsArray=( + INSTALL_PATH="$out/lib/lua/${lua.luaversion}" + ); + ''; + + meta = { + platforms = stdenv.lib.platforms.unix; + license = stdenv.lib.licenses.mit; + description = "Lua bindings for POSIX iconv"; + maintainers = [ maintainers.richardipsum ]; + homepage = "https://ittner.github.io/lua-iconv/"; + }; + }; + luasec = buildLuaPackage rec { name = "sec-0.6"; src = fetchFromGitHub { diff --git a/pkgs/top-level/node-packages-generated.nix b/pkgs/top-level/node-packages-generated.nix index 432a367d1535..3014273e5c3a 100644 --- a/pkgs/top-level/node-packages-generated.nix +++ b/pkgs/top-level/node-packages-generated.nix @@ -5381,15 +5381,15 @@ cpu = [ ]; }; by-spec."bower2nix"."*" = - self.by-version."bower2nix"."3.1.1"; - by-version."bower2nix"."3.1.1" = self.buildNodePackage { - name = "bower2nix-3.1.1"; - version = "3.1.1"; + self.by-version."bower2nix"."3.2.0"; + by-version."bower2nix"."3.2.0" = self.buildNodePackage { + name = "bower2nix-3.2.0"; + version = "3.2.0"; bin = true; src = fetchurl { - url = "https://registry.npmjs.org/bower2nix/-/bower2nix-3.1.1.tgz"; - name = "bower2nix-3.1.1.tgz"; - sha1 = "wfzj1k6jkfnk1bkgbmpni59mdab8zk3p"; + url = "https://registry.npmjs.org/bower2nix/-/bower2nix-3.2.0.tgz"; + name = "bower2nix-3.2.0.tgz"; + sha1 = "nlzr17lidjf72s60vcsnqpjxgnnsn32s"; }; deps = { "argparse-1.0.4" = self.by-version."argparse"."1.0.4"; @@ -5410,7 +5410,7 @@ os = [ ]; cpu = [ ]; }; - "bower2nix" = self.by-version."bower2nix"."3.0.1"; + "bower2nix" = self.by-version."bower2nix"."3.2.0"; by-spec."bplist-creator"."0.0.4" = self.by-version."bplist-creator"."0.0.4"; by-version."bplist-creator"."0.0.4" = self.buildNodePackage { diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 4af5a810fd06..e45256bd3dc4 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -433,17 +433,12 @@ let pgocaml = callPackage ../development/ocaml-modules/pgocaml {}; - ocaml_react = callPackage ../development/ocaml-modules/react { }; - reactivedata = callPackage ../development/ocaml-modules/reactivedata {}; - ocamlscript = callPackage ../development/tools/ocaml/ocamlscript { }; ocamlsdl= callPackage ../development/ocaml-modules/ocamlsdl { }; ocaml_sqlite3 = callPackage ../development/ocaml-modules/sqlite3 { }; - ocaml_ssl = callPackage ../development/ocaml-modules/ssl { }; - ocaml_text = callPackage ../development/ocaml-modules/ocaml-text { }; ocf = callPackage ../development/ocaml-modules/ocf { }; @@ -593,6 +588,10 @@ let re = callPackage ../development/ocaml-modules/re { }; + react = callPackage ../development/ocaml-modules/react { }; + + reactivedata = callPackage ../development/ocaml-modules/reactivedata {}; + reason = callPackage ../development/compilers/reason { }; rope = callPackage ../development/ocaml-modules/rope { }; @@ -605,6 +604,8 @@ let sqlite3EZ = callPackage ../development/ocaml-modules/sqlite3EZ { }; + ssl = callPackage ../development/ocaml-modules/ssl { }; + stog = callPackage ../applications/misc/stog { }; stringext = callPackage ../development/ocaml-modules/stringext { }; @@ -625,6 +626,8 @@ let sawja = callPackage ../development/ocaml-modules/sawja { }; + stdint = callPackage ../development/ocaml-modules/stdint { }; + uucd = callPackage ../development/ocaml-modules/uucd { }; uucp = callPackage ../development/ocaml-modules/uucp { }; uunf = callPackage ../development/ocaml-modules/uunf { }; diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix index 14c00504d40a..02afd115f3d9 100644 --- a/pkgs/top-level/perl-packages.nix +++ b/pkgs/top-level/perl-packages.nix @@ -8329,7 +8329,7 @@ let self = _self // overrides; _self = with self; { buildInputs = [ ModuleBuild NetDNSResolverProgrammable ]; propagatedBuildInputs = [ Error NetAddrIP NetDNS URI ]; - buildPhase = "perl Build.PL --install_base=$out --install_path=\"sbin=$out/bin\"; ./Build build "; + buildPhase = "perl Build.PL --install_base=$out --install_path=\"sbin=$out/bin\" --install_path=\"lib=$out/lib/perl5/site_perl\"; ./Build build "; doCheck = false; # The main test performs network access meta = { @@ -12857,11 +12857,11 @@ let self = _self // overrides; _self = with self; { }; }; - TAPParserSourceHandlerpgTAP = buildPerlModule { - name = "TAP-Parser-SourceHandler-pgTAP-3.30"; + TAPParserSourceHandlerpgTAP = buildPerlModule rec { + name = "TAP-Parser-SourceHandler-pgTAP-3.33"; src = fetchurl { - url = mirror://cpan/authors/id/D/DW/DWHEELER/TAP-Parser-SourceHandler-pgTAP-3.30.tar.gz; - sha256 = "08gadqf898r23sx07sn13555cp9zkwp8igjlh1fza2ycfivpfl9f"; + url = "mirror://cpan/authors/id/D/DW/DWHEELER/${name}.tar.gz"; + sha256 = "15q46y2hbp2ij5n9ir76lmspqj3n8gb0z9l5ipb5g7q90l160m4k"; }; meta = { homepage = http://search.cpan.org/dist/Tap-Parser-Sourcehandler-pgTAP/; @@ -15580,6 +15580,32 @@ let self = _self // overrides; _self = with self; { }; }; + WWWYoutubeViewer = buildPerlPackage rec { + name = "WWW-YoutubeViewer-${version}"; + version = "3.3.0"; + + src = fetchFromGitHub { + owner = "trizen"; + repo = "youtube-viewer"; + rev = "${version}"; + sha256 = "15xyrwv08fw8jmpydwzks26ipxnzliwddgyjcfqiaj0p7lwlhmx1"; + }; + + propagatedBuildInputs = [ + LWP + LWPProtocolHttps + DataDump + JSON + ]; + + meta = { + description = "A lightweight application for searching and streaming videos from YouTube"; + homepage = https://github.com/trizen/youtube-viewer; + maintainers = with maintainers; [ woffs ]; + license = with stdenv.lib.licenses; [ artistic2 ]; + }; + }; + Want = buildPerlPackage rec { name = "Want-0.29"; src = fetchurl { diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index b3269b5230c6..a10f4e9830ab 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -776,12 +776,12 @@ in { in buildPythonPackage rec { name = "${pname}-${version}"; pname = "awscli"; - version = "1.11.108"; + version = "1.11.162"; namePrefix = ""; src = fetchPypi { inherit pname version; - sha256 = "1wz76hkljc25zzfa2l5jv0mbr5vx6d9ixq4sq0p3zf3l45ql6mdf"; + sha256 = "0ff17fdzzncrzl7ps1cyrs0c5f82ncbvflnjz8sd1vkcmn9yij8r"; }; # No tests included @@ -1313,11 +1313,11 @@ in { }; betamax = buildPythonPackage rec { - name = "betamax-0.6.0"; + name = "betamax-0.8.0"; src = pkgs.fetchurl { url = "mirror://pypi/b/betamax/${name}.tar.gz"; - sha256 = "0vw4d53jbbb2kdl7l891h8iyxklqcd6ldvgcyhw9hl40ljdhv1wz"; + sha256 = "18f8v5gng3j773jlbbzx4rg1i4y2zw3m2l1zpmbvp8bh5a2q1i42"; }; propagatedBuildInputs = [ self.requests ]; @@ -2145,13 +2145,13 @@ in { boto3 = buildPythonPackage rec { name = "boto3-${version}"; - version = "1.4.4"; + version = "1.4.7"; src = pkgs.fetchFromGitHub { owner = "boto"; repo = "boto3"; rev = version; - sha256 = "1zngj38a2dmc02p3ha9crzv9k682f0zgyyfx1bgg8hwwrnggikwl"; + sha256 = "0ca08xkkx6py08gqgn1aci9pklidwivxbvpwjv7623jr21avakdi"; }; propagatedBuildInputs = [ self.botocore self.jmespath self.s3transfer ] ++ @@ -2184,11 +2184,11 @@ in { botocore = buildPythonPackage rec { name = "${pname}-${version}"; pname = "botocore"; - version = "1.5.71"; + version = "1.7.20"; src = fetchPypi { inherit pname version; - sha256 = "1fgg28halsy4g43wjpkbd6l0wqiwyzkd4zjrzbbyzw4dxbsf3xfm"; + sha256 = "16sy35bp9i2g9785l8jzcd4ddc2nydqs3wnkqwi36xx6l3bdbn13"; }; propagatedBuildInputs = with self; [ @@ -2355,25 +2355,7 @@ in { }; }; - devpi-common = buildPythonPackage rec { - name = "devpi-common"; - version = "3.0.1"; - - src = pkgs.fetchurl { - url = "mirror://pypi/d/devpi-common/devpi-common-${version}.tar.gz"; - sha256 = "0l3a7iyk596x6pvzg7604lzzi012qszr804fqn6f517zcy1xz23j"; - }; - - propagatedBuildInputs = [ self.requests self.py ]; - - meta = { - homepage = https://bitbucket.org/hpk42/devpi; - description = "Utilities jointly used by devpi-server and devpi-client"; - license = licenses.mit; - maintainers = with maintainers; [ lewo makefu ]; - }; - }; - + devpi-common = callPackage ../development/python-modules/devpi-common { }; # A patched version of buildout, useful for buildout based development on Nix zc_buildout_nix = callPackage ../development/python-modules/buildout-nix { }; @@ -2606,6 +2588,15 @@ in { # https://github.com/celery/celery/pull/3736#issuecomment-274155454 from upstream patches = [ ../development/python-modules/celery/fix_endless_python3.6_loop_logger_isa.patch ]; + # make /etc/protocols accessible to fix socket.getprotobyname('tcp') in sandbox + preCheck = '' + export NIX_REDIRECTS=/etc/protocols=${pkgs.iana-etc}/etc/protocols \ + LD_PRELOAD=${pkgs.libredirect}/lib/libredirect.so + ''; + postCheck = '' + unset NIX_REDIRECTS LD_PRELOAD + ''; + buildInputs = with self; [ pytest case ]; propagatedBuildInputs = with self; [ kombu billiard pytz anyjson amqp eventlet ]; @@ -3286,6 +3277,8 @@ in { sha256 = "d04bb2425086c3fe86f7bc48915290b13e798497839fbb18ab7f6dffcf98cc3a"; }; + outputs = [ "out" "dev" ]; + buildInputs = [ pkgs.openssl self.cryptography_vectors ] ++ optional stdenv.isDarwin pkgs.darwin.apple_sdk.frameworks.Security; propagatedBuildInputs = with self; [ @@ -6054,6 +6047,8 @@ in { }; + hupper = callPackage ../development/python-modules/hupper {}; + hovercraft = buildPythonPackage rec { disabled = ! isPy3k; name = "hovercraft-${version}"; @@ -7042,6 +7037,10 @@ in { phpserialize = callPackage ../development/python-modules/phpserialize { }; + plaster = callPackage ../development/python-modules/plaster {}; + + plaster-pastedeploy = callPackage ../development/python-modules/plaster-pastedeploy {}; + plotly = callPackage ../development/python-modules/plotly { }; podcastparser = callPackage ../development/python-modules/podcastparser { }; @@ -7139,6 +7138,8 @@ in { pycassa = callPackage ../development/python-modules/pycassa { }; + pyblake2 = callPackage ../development/python-modules/pyblake2 { }; + pybluez = buildPythonPackage rec { version = "unstable-20160819"; pname = "pybluez"; @@ -7320,23 +7321,27 @@ in { }; pyramid = buildPythonPackage rec { - name = "pyramid-1.7"; + pname = "pyramid"; + version = "1.9.1"; + name = "${pname}-${version}"; - src = pkgs.fetchurl { - url = "mirror://pypi/p/pyramid/${name}.tar.gz"; - sha256 = "161qacv7qqln3q02kcqll0q2mmaypm701hn1llwdwnkaywkb3xi6"; + src = fetchPypi { + inherit pname version; + sha256 = "0dhbzc4q0vsnv3aihy728aczg56xs6h9s1rmvr096q4lb6yln3w4"; }; - buildInputs = with self; [ + checkInputs = with self; [ docutils virtualenv webtest zope_component - zope_interface ] ++ optional isPy26 unittest2; propagatedBuildInputs = with self; [ + hupper PasteDeploy + plaster + plaster-pastedeploy repoze_lru repoze_sphinx_autointerface translationstring @@ -8376,31 +8381,7 @@ in { django-raster = callPackage ../development/python-modules/django-raster { }; - django_redis = buildPythonPackage rec { - name = "django-redis-${version}"; - version = "4.2.0"; - - src = pkgs.fetchurl { - url = "mirror://pypi/d/django-redis/${name}.tar.gz"; - sha256 = "9ad6b299458f7e6bfaefa8905f52560017369d82fb8fb0ed4b41adc048dbf11c"; - }; - - doCheck = false; - - buildInputs = [ self.mock ]; - - propagatedBuildInputs = with self; [ - django - redis - msgpack - ]; - - meta = { - description = "Full featured redis cache backend for Django"; - homepage = https://github.com/niwibe/django-redis; - license = licenses.bsd3; - }; - }; + django_redis = callPackage ../development/python-modules/django_redis { }; django_reversion = buildPythonPackage rec { name = "django-reversion-${version}"; @@ -8856,18 +8837,21 @@ in { }; eventlet = buildPythonPackage rec { - name = "eventlet-0.17.4"; + pname = "eventlet"; + version = "0.20.0"; + name = "${pname}-${version}"; - src = pkgs.fetchurl { - url = "mirror://pypi/e/eventlet/${name}.tar.gz"; - sha256 = "0vam0qfm8p5jkpp2cv12r5bnpnv902ld7q074h7x5y5g9rqyj8c7"; + src = fetchPypi { + inherit pname version; + sha256 = "15bq5ybbigxnp5xwkps53zyhlg15lmcnq3ny2dppj0r0bylcs5rf"; }; buildInputs = with self; [ nose httplib2 pyopenssl ]; doCheck = false; # too much transient errors to bother - propagatedBuildInputs = optionals (!isPyPy) [ self.greenlet ]; + propagatedBuildInputs = optionals (!isPyPy) [ self.greenlet ] ++ + (with self; [ enum-compat ]) ; meta = { homepage = http://pypi.python.org/pypi/eventlet/; @@ -10859,6 +10843,28 @@ in { keyring = callPackage ../development/python-modules/keyring { }; + keyutils = buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "keyutils"; + version = "0.5"; + + src = pkgs.fetchurl { + url = "mirror://pypi/k/${pname}/${name}.tar.gz"; + sha256 = "0dskys71vkn59vlsfs1ljli0qnzk7b10iv4pawxawnk2hvyjrf10"; + }; + + buildInputs = with self; [ pkgs.keyutils pytestrunner ]; + + doCheck = false; + + meta = { + description = "A set of python bindings for keyutils"; + homepage = https://github.com/sassoftware/python-keyutils; + license = licenses.asl20; + maintainers = with maintainers; [ primeos ]; + }; + }; + klaus = buildPythonPackage rec { version = "0.9.1"; name = "klaus-${version}"; @@ -11201,27 +11207,7 @@ in { linode-api = callPackage ../development/python-modules/linode-api { }; - livereload = buildPythonPackage rec { - name = "livereload-${version}"; - version = "2.5.0"; - - src = pkgs.fetchFromGitHub { - owner = "lepture"; - repo = "python-livereload"; - rev = "v${version}"; - sha256 = "0ixsc7wibmkfk9fnyq0d1b5d9snxfpzzzgsxvq28rn54v6q8b7m2"; - }; - - buildInputs = with self; [ nose django ]; - - propagatedBuildInputs = with self; [ tornado six ]; - - meta = { - description = "Runs a local server that reloads as you develop"; - homepage = "https://github.com/lepture/python-livereload"; - license = licenses.bsd3; - }; - }; + livereload = callPackage ../development/python-modules/livereload { }; llfuse = buildPythonPackage rec { name = "llfuse-1.0"; @@ -12623,13 +12609,15 @@ in { }; monotonic = buildPythonPackage rec { - name = "monotonic-0.4"; + pname = "monotonic"; + version = "1.3"; + name = "${pname}-${version}"; __propagatedImpureHostDeps = stdenv.lib.optional stdenv.isDarwin "/usr/lib/libc.dylib"; - src = pkgs.fetchurl { - url = "mirror://pypi/m/monotonic/${name}.tar.gz"; - sha256 = "1diab6hfh3jpa1f0scpqaqrawk4g97ss4v7gkn2yw8znvdm6abw5"; + src = fetchPypi { + inherit pname version; + sha256 = "06vw7jwq96106plhlc5vz1v1xvjismdgw9wjyzvzf0ylglnrwiib"; }; patchPhase = optionalString stdenv.isLinux '' @@ -13846,12 +13834,13 @@ in { }; oslo-serialization = buildPythonPackage rec { - name = "oslo.serialization-${version}"; - version = "1.10.0"; + pname = "oslo.serialization"; + version = "2.20.0"; + name = "${pname}-${version}"; - src = pkgs.fetchurl { - url = "mirror://pypi/o/oslo.serialization/${name}.tar.gz"; - sha256 = "15k8aql2rx5jzv3hfvmd48vsyw172qa64bs3fmsyx25p37zyfy8a"; + src = fetchPypi { + inherit pname version; + sha256 = "00j8hn8f0shk4anzb6zwn8w1sfxcil9a3jgxljwalq6ma2rzp9pw"; }; patchPhase = '' @@ -13893,12 +13882,13 @@ in { oslo-utils = buildPythonPackage rec { - name = "oslo.utils-${version}"; - version = "2.6.0"; + pname = "oslo.utils"; + version = "3.29.0"; + name = "${pname}-${version}"; - src = pkgs.fetchurl { - url = "mirror://pypi/o/oslo.utils/${name}.tar.gz"; - sha256 = "1prgi03nxkcykyja821qkycsqlnpyzw17mpvj8qf3pjmgb9gv1fy"; + src = fetchPypi { + inherit pname version; + sha256 = "0l90ijw96czjd6z8bw88983rsnq5753iw86rhk1wi064w4rs19ig"; }; propagatedBuildInputs = with self; [ pbr Babel six iso8601 pytz netaddr netifaces @@ -13981,6 +13971,8 @@ in { testtools testscenarios testrepository oslotest subunit ]; + # breaks in sandboxing + doCheck = false; }; oslo-messaging = buildPythonPackage rec { @@ -14137,17 +14129,19 @@ in { cmd2 = buildPythonPackage rec { name = "cmd2-${version}"; - version = "0.6.8"; + version = "0.7.7"; src = pkgs.fetchurl { url = "mirror://pypi/c/cmd2/${name}.tar.gz"; - sha256 = "1a346zcd46c8gwbbp2cxsmvgfkyy26kwxjzdnkv7n47w6660sy5c"; + sha256 = "0widbir8ay1fd4zm8l0rjq78j1cvbammbz8xs32crbanqsgzpqml"; }; # No tests included doCheck = false; propagatedBuildInputs = with self; [ + pyperclip + six pyparsing ]; @@ -14254,12 +14248,14 @@ in { oslo-service = buildPythonPackage rec { - name = "oslo.service-${version}"; - version = "0.10.0"; + pname = "oslo.service"; + version = "1.26.0"; - src = pkgs.fetchurl { - url = "mirror://pypi/o/oslo.service/oslo.service-0.10.0.tar.gz"; - sha256 = "1pcnimc2a50arcgq355ad9lramf6y1yv974swgfj6w90v5c6p9gz"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "083q7z6nrska5fq12vnd70blphxscd7ivca2d78jk84d99h0m5n5"; }; propagatedBuildInputs = with self; [ @@ -14267,16 +14263,15 @@ in { oslo-concurrency wrapt eventlet six oslo-serialization greenlet paste oslo-config monotonic iso8601 oslo-log pytz routes msgpack oslo-i18n argparse oslo-utils pbr enum34 netaddr stevedore netifaces - pyinotify webob retrying pyinotify ]; + pyinotify webob retrying pyinotify oslo-log ]; buildInputs = with self; [ oslosphinx oslotest pkgs.procps mock mox3 fixtures subunit testrepository testtools testscenarios ]; - # failing tests - preCheck = '' - rm oslo_service/tests/test_service.py - ''; + ## cannot import eventlet due to: + # _proto_tcp = socket.getprotobyname('tcp') + doCheck = false; meta = with stdenv.lib; { homepage = "http://wiki.openstack.org/wiki/Oslo#oslo.service"; @@ -14721,13 +14716,14 @@ in { oslo-concurrency = buildPythonPackage rec { - name = "oslo-concurrency-${version}"; - version = "2.7.0"; + pname = "oslo.concurrency"; + version = "3.22.0"; + name = "${pname}-${version}"; - src = pkgs.fetchurl { - url = "mirror://pypi/o/oslo.concurrency/oslo.concurrency-2.7.0.tar.gz"; - sha256 = "1yp8c87yi6fx1qbq4y1xkx47iiifg7jqzpcghivhxqra8vna185d"; - }; + src = fetchPypi { + inherit pname version; + sha256 = "0nh1ycc2s6w05g5w63bsmmda0gw7qsrwlax3as8a0piai99z4m51"; + }; propagatedBuildInputs = with self; [ oslo-i18n argparse six wrapt oslo-utils pbr enum34 Babel netaddr monotonic @@ -14735,8 +14731,8 @@ in { eventlet ]; buildInputs = with self; [ - oslosphinx fixtures futures coverage oslotest - ]; + oslosphinx fixtures coverage oslotest + ] ++ (optional (!isPy3k) futures); # too much magic in tests doCheck = false; @@ -14816,16 +14812,17 @@ in { olefile = callPackage ../development/python-modules/olefile { }; oslo-log = buildPythonPackage rec { - name = "oslo.log-${version}"; - version = "1.12.1"; + name = "${pname}-${version}"; + pname = "oslo.log"; + version = "3.31.0"; - src = pkgs.fetchurl { - url = "mirror://pypi/o/oslo.log/${name}.tar.gz"; - sha256 = "10x596r19zjla5n1bf04j5vncx0c9gpc5wc2jlmgjbl3cyx3vgsv"; + src = fetchPypi { + inherit pname version; + sha256 = "1w08cl98n8592pvb2gw01mqlwi8nnnpg1zy10mvj6xdpvfk2yqzz"; }; propagatedBuildInputs = with self; [ - pbr Babel six iso8601 debtcollector + pbr Babel six iso8601 debtcollector dateutil oslo-utils oslo-i18n oslo-config oslo-serialization oslo-context ] ++ stdenv.lib.optional stdenv.isLinux pyinotify; buildInputs = with self; [ oslotest oslosphinx ]; @@ -14835,12 +14832,13 @@ in { }; oslo-context = buildPythonPackage rec { - name = "oslo.context-${version}"; - version = "0.7.0"; + name = "${pname}-${version}"; + pname = "oslo.context"; + version = "2.18.1"; - src = pkgs.fetchurl { - url = "mirror://pypi/o/oslo.context/${name}.tar.gz"; - sha256 = "18fmg9dhgngshk63wfb3ddrgx5br8jxkk3x30z40741mslp1fdjy"; + src = fetchPypi { + inherit pname version; + sha256 = "1sc7qrwffsm15m91c17k0xiglv6bxh9sbksvxvrrgja82m57mgh6"; }; propagatedBuildInputs = with self; [ pbr Babel ]; @@ -14852,14 +14850,14 @@ in { oslo-i18n = buildPythonPackage rec { name = "oslo.i18n-${version}"; - version = "2.7.0"; + version = "3.18.0"; src = pkgs.fetchurl { url = "mirror://pypi/o/oslo.i18n/${name}.tar.gz"; - sha256 = "11jgcvj36g97awh7fpar4xxgwrvzfahq6rw7xxqac32ia790ylcz"; + sha256 = "19w6wil588fgppc7d42fqkrjs0y81ap62svzbij8hlb3w2d4a91n"; }; - propagatedBuildInputs = with self; [ pbr Babel six oslo-config ]; + propagatedBuildInputs = with self; [ pbr Babel six ]; buildInputs = with self; [ mock coverage oslotest ]; patchPhase = '' sed -i 's@python@${python.interpreter}@' .testr.conf @@ -14870,11 +14868,11 @@ in { oslotest = buildPythonPackage rec { name = "oslotest-${version}"; - version = "1.12.0"; + version = "2.18.0"; src = pkgs.fetchurl { url = "mirror://pypi/o/oslotest/${name}.tar.gz"; - sha256 = "17i92hymw1dwmmb5yv90m2gam2x21mc960q1pr7bly93x49h8666"; + sha256 = "0a0zhpb4yp7g6d290jk7a4pfci4ciwhsrqzhbwbl2szi50gp7km1"; }; patchPhase = '' @@ -14882,28 +14880,27 @@ in { ''; propagatedBuildInputs = with self; [ pbr fixtures subunit six testrepository - testscenarios testtools mock mox3 oslo-config os-client-config ]; + os-client-config debtcollector testscenarios testtools mock mox3 os-client-config ]; }; os-client-config = buildPythonPackage rec { name = "os-client-config-${version}"; - version = "1.8.1"; + version = "1.28.0"; src = pkgs.fetchurl { url = "mirror://pypi/o/os-client-config/${name}.tar.gz"; - sha256 = "10hz4yp594mi1p7v1pvgsmx5w2rnb9y8d0jvb2lfv03ljnwzv8jz"; + sha256 = "1f7q384b9drp3fqcg0w8aihv9k4idaay8vr3an187zjpgbx9rgp5"; }; - buildInputs = with self; [ pbr testtools testscenarios testrepository fixtures ]; - propagatedBuildInputs = with self; [ appdirs pyyaml keystoneauth1 ]; + # requires oslotest but is a dependency of that package ... + doCheck = false; + + buildInputs = with self; [ pbr testtools testscenarios testrepository fixtures jsonschema ]; + propagatedBuildInputs = with self; [ appdirs pyyaml keystoneauth1 requestsexceptions ]; patchPhase = '' sed -i 's@python@${python.interpreter}@' .testr.conf ''; - # TODO: circular import on oslotest - preCheck = '' - rm os_client_config/tests/{test_config,test_cloud_config,test_environ}.py - ''; }; keystoneauth1 = callPackage ../development/python-modules/keystoneauth1 {}; @@ -14927,38 +14924,42 @@ in { mox3 = buildPythonPackage rec { name = "mox3-${version}"; - version = "0.11.0"; + version = "0.23.0"; src = pkgs.fetchurl { url = "mirror://pypi/m/mox3/${name}.tar.gz"; - sha256 = "09dkgki21v5zqrx575h1aazxsq5akkv0a90z644bk1ry9a4zg1pn"; + sha256 = "0q26sg0jasday52a7y0cch13l0ssjvr4yqnvswqxsinj1lv5ld88"; }; patchPhase = '' sed -i 's@python@${python.interpreter}@' .testr.conf ''; + # FAIL: mox3.tests.test_mox.RegexTest.testReprWithFlags + # ValueError: cannot use LOCALE flag with a str pattern + doCheck = !isPy36; + buildInputs = with self; [ subunit testrepository testtools six ]; propagatedBuildInputs = with self; [ pbr fixtures ]; }; debtcollector = buildPythonPackage rec { name = "debtcollector-${version}"; - version = "0.9.0"; + version = "1.17.0"; src = pkgs.fetchurl { url = "mirror://pypi/d/debtcollector/${name}.tar.gz"; - sha256 = "1mvdxdrnwlgfqg26s5himkjq6f06r2khlrignx36kkbyaix6j9xb"; + sha256 = "0rh47fd5kgjcdv9dxr7xf0x308cvfic3h2zk03ifvb4pdc5kbqvi"; }; patchPhase = '' sed -i 's@python@${python.interpreter}@' .testr.conf ''; buildInputs = with self; [ pbr ]; - propagatedBuildInputs = with self; [ wrapt Babel six doc8 ]; + propagatedBuildInputs = with self; [ wrapt Babel six doc8 ] ++ + (optional (isPy26 || isPy27) funcsigs); checkInputs = with self; [ pbr Babel six wrapt testtools testscenarios - testrepository subunit coverage oslotest ]; - doCheck = false; # oslo is broken + testrepository subunit coverage ]; }; doc8 = callPackage ../development/python-modules/doc8 { }; @@ -15592,27 +15593,7 @@ in { }; pika-pool = callPackage ../development/python-modules/pika-pool { }; - - platformio = buildPythonPackage rec { - name = "platformio-${version}"; - version="2.10.3"; - - disabled = isPy3k || isPyPy; - - src = pkgs.fetchurl { - url = "https://pypi.python.org/packages/b7/a3/1d3a9d7bae91df1b607e0f31549ec3e0006f29484cc6a1431b3fe3c5b02e/platformio-2.10.3.tar.gz"; - sha256 = "f3a646871f9baed05f336a32576edaab90abf0737d8adb54f2acb7bcad42a65f"; - }; - - propagatedBuildInputs = with self; [ click_5 requests bottle pyserial lockfile colorama]; - - meta = with stdenv.lib; { - description = "An open source ecosystem for IoT development"; - homepage = http://platformio.org; - maintainers = with maintainers; [ mog ]; - license = licenses.asl20; - }; - }; + platformio = callPackage ../development/python-modules/platformio { }; pylibconfig2 = buildPythonPackage rec { name = "pylibconfig2-${version}"; @@ -16046,7 +16027,8 @@ in { pyalgotrade = buildPythonPackage { - name = "pyalogotrade-0.16"; + name = "pyalgotrade-0.16"; + disabled = isPy3k; src = pkgs.fetchurl { url = "mirror://pypi/P/PyAlgoTrade/PyAlgoTrade-0.16.tar.gz"; @@ -16823,6 +16805,8 @@ in { pyshp = callPackage ../development/python-modules/pyshp { }; + pysmbc = callPackage ../development/python-modules/pysmbc { }; + pyspread = callPackage ../development/python-modules/pyspread { }; pyx = buildPythonPackage rec { @@ -16835,7 +16819,7 @@ in { }; disabled = !isPy3k; - + # No tests in archive doCheck = false; @@ -17054,12 +17038,14 @@ in { }; pyjwt = buildPythonPackage rec { - version = "1.4.2"; + version = "1.5.3"; name = "pyjwt-${version}"; - src = pkgs.fetchurl { - url = "http://github.com/progrium/pyjwt/archive/${version}.tar.gz"; - sha256 = "06vg84aicwkv0kli8i4jhg0kc6298cmh38ib058q01yxzk6q17gn"; + src = pkgs.fetchFromGitHub { + owner = "progrium"; + repo = "pyjwt"; + rev = version; + sha256 = "109zb3ka2lvp00r9nawa0lmljfikvhcj5yny19kcipz8mqia1gs8"; }; buildInputs = with self; [ pytestrunner pytestcov pytest coverage ]; @@ -17761,6 +17747,8 @@ in { sha256 = "0d283g4zi0hr9papd24mjl70mi15gyzq6fx618rizi87dgipqqax"; }; + outputs = [ "out" "dev" ]; + preCheck = '' sed -i 's/test_set_default_verify_paths/noop/' tests/test_ssl.py # https://github.com/pyca/pyopenssl/issues/692 @@ -17850,22 +17838,7 @@ in { }; }; - pyserial = buildPythonPackage rec { - name = "pyserial-2.7"; - - src = pkgs.fetchurl { - url = "mirror://pypi/p/pyserial/${name}.tar.gz"; - sha256 = "3542ec0838793e61d6224e27ff05e8ce4ba5a5c5cc4ec5c6a3e8d49247985477"; - }; - - doCheck = false; - - meta = { - homepage = "http://pyserial.sourceforge.net/"; - license = licenses.psfl; - description = "Python serial port extension"; - }; - }; + pyserial = callPackage ../development/python-modules/pyserial {}; pymongo = callPackage ../development/python-modules/pymongo {}; @@ -18363,30 +18336,14 @@ in { }; }; + requestsexceptions = callPackage ../development/python-modules/requestsexceptions {}; + requests_ntlm = callPackage ../development/python-modules/requests_ntlm { }; requests_oauthlib = callPackage ../development/python-modules/requests-oauthlib.nix { }; - requests_toolbelt = buildPythonPackage rec { - version = "0.7.1"; - name = "requests-toolbelt-${version}"; - - src = pkgs.fetchurl { - url = "https://github.com/sigmavirus24/requests-toolbelt/archive/${version}.tar.gz"; - sha256 = "16grklnbgcfwqj3f39gw7fc9afi7xlp9gm7x8w6mi81dzhdxf50y"; - }; - - propagatedBuildInputs = with self; [ requests ]; - - buildInputs = with self; [ betamax mock pytest ]; - - meta = { - description = "A toolbelt of useful classes and functions to be used with python-requests"; - homepage = http://toolbelt.rtfd.org; - maintainers = with maintainers; [ matthiasbeyer jgeerds ]; - }; - - }; + requests-toolbelt = callPackage ../development/python-modules/requests-toolbelt { }; + requests_toolbelt = self.requests-toolbelt; # Old attr, 2017-09-26 retry_decorator = buildPythonPackage rec { name = "retry_decorator-1.0.0"; @@ -18523,22 +18480,7 @@ in { }; - redis = buildPythonPackage rec { - name = "redis-2.10.5"; - - src = pkgs.fetchurl { - url = "mirror://pypi/r/redis/${name}.tar.gz"; - sha256 = "0csmrkxb29x7xs9b51zplwkkq2hwnbh9jns1g85dykn5rxmaxysx"; - }; - - # tests require a running redis - doCheck = false; - - meta = { - description = "Python client for Redis key-value store"; - homepage = "https://pypi.python.org/pypi/redis/"; - }; - }; + redis = callPackage ../development/python-modules/redis { }; rednose = buildPythonPackage rec { name = "rednose-${version}"; @@ -19045,14 +18987,16 @@ in { ropper = callPackage ../development/python-modules/ropper { }; routes = buildPythonPackage rec { - name = "routes-1.12.3"; + pname = "Routes"; + version = "2.4.1"; + name = "${pname}-${version}"; - src = pkgs.fetchurl { - url = mirror://pypi/R/Routes/Routes-1.12.3.tar.gz; - sha256 = "eacc0dfb7c883374e698cebaa01a740d8c78d364b6e7f3df0312de042f77aa36"; + src = fetchPypi { + inherit pname version; + sha256 = "1zamff3m0kc4vyfniyhxpkkcqv1rrgnmh37ykxv34nna1ws47vi6"; }; - propagatedBuildInputs = with self; [ paste webtest ]; + propagatedBuildInputs = with self; [ paste webtest repoze_lru ]; meta = { description = "A Python re-implementation of the Rails routes system for mapping URLs to application actions"; @@ -20359,22 +20303,7 @@ in { }; }; - semantic-version = buildPythonPackage rec { - pname = "semantic_version"; - version = "2.4.2"; - name = "${pname}${version}"; - - src = self.fetchPypi { - inherit pname version; - sha256 = "7e8b7fa74a3bc9b6e90b15b83b9bc2377c78eaeae3447516425f475d5d6932d2"; - }; - - meta = { - description = "A library implementing the 'SemVer' scheme"; - license = licenses.bsdOriginal; - maintainers = with maintainers; [ layus ]; - }; - }; + semantic-version = callPackage ../development/python-modules/semantic-version { }; sexpdata = buildPythonPackage rec { name = "sexpdata-0.0.2"; @@ -21881,27 +21810,7 @@ in { }; }; - twine = buildPythonPackage rec { - name = "twine-${version}"; - version = "1.8.1"; - - src = pkgs.fetchurl { - url = "mirror://pypi/t/twine/${name}.tar.gz"; - sha256 = "68b663691a947b844f92853c992d42bb68b6333bffc9ab7f661346b001c1da82"; - }; - - propagatedBuildInputs = with self; [ clint pkginfo requests requests_toolbelt ]; - - # Requires network - doCheck = false; - - meta = { - description = "Collection of utilities for interacting with PyPI"; - homepage = https://github.com/pypa/twine; - license = licenses.asl20; - maintainer = with maintainers; [ fridh ]; - }; - }; + twine = callPackage ../development/python-modules/twine { }; twisted = callPackage ../development/python-modules/twisted { }; @@ -22487,15 +22396,16 @@ EOF }; webob = buildPythonPackage rec { - version = "1.4.1"; - name = "webob-${version}"; + pname = "WebOb"; + version = "1.7.3"; + name = "${pname}-${version}"; - src = pkgs.fetchurl { - url = "mirror://pypi/W/WebOb/WebOb-${version}.tar.gz"; - sha256 = "1nz9m6ijf46wfn33zfza13c0k1n4kjnmn3icdlrlgz5yj21vky0j"; + src = fetchPypi { + inherit pname version; + sha256 = "10vjp2rvqiyvw157fk3sy7yds1gknzw97z4gk0qv1raskx5s2p76"; }; - propagatedBuildInputs = with self; [ nose ]; + propagatedBuildInputs = with self; [ nose pytest ]; meta = { description = "WSGI request and response object"; diff --git a/pkgs/top-level/rust-packages.nix b/pkgs/top-level/rust-packages.nix index 6c39d865ac21..a4fd5ca54ee2 100644 --- a/pkgs/top-level/rust-packages.nix +++ b/pkgs/top-level/rust-packages.nix @@ -7,13 +7,13 @@ { stdenv, fetchFromGitHub, git }: stdenv.mkDerivation { - name = "rustRegistry-2017-09-10"; + name = "rustRegistry-2017-10-03"; src = fetchFromGitHub { owner = "rust-lang"; repo = "crates.io-index"; - rev = "2e573cbbb2db591ff9d46339910f21e35b21339f"; - sha256 = "0sgpc2aygmvyjb3kinzh83bj4j92ny18159alqb1x8w26wqmisfq"; + rev = "f9e21955350caf67db45c4a4a38dbab2f2250bfc"; + sha256 = "1yk0l0r9idn7crnnw44sig69kvvyq3ycv417s88hd16m1fpl5y77"; }; phases = [ "unpackPhase" "installPhase" ]; installPhase = '' |