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482 files changed, 16939 insertions, 12425 deletions
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 000000000000..195d1ae6d0ac --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,68 @@ +# How to contribute + +## Opening issues + +* Make sure you have a [GitHub account](https://github.com/signup/free) +* Submit a ticket for your issue, assuming one does not already exist. + * Clearly describe the issue including steps to reproduce when it is a bug. + +## Making patches + +* Read [Manual (How to write packages for Nix)](https://nixos.org/nixpkgs/manual/) +* Fork the repository on GitHub. +* Create a branch for your future fix. + * You can make branch from a commit of your local `nixos-version`. That will help you to avoid additional local compilations. Because you will recieve some packages from cache server. + * For example: `nixos-version` returns `15.05.git.0998212 (Dingo)`. So you can do: + + ```bash + git checkout 0998212 + git checkout -b 'fix/pkg-name-update' + ``` + * Please avoid working directly on the `master` branch. +* Make commits of logical units. + * If you removed pkgs, made some major changes etc., write about them in `nixos/doc/manual/release-notes/rl-unstable.xml`. +* Check for unnecessary whitespace with `git diff --check` before committing. +* Format the commit in a following way: + + ``` + (pkg-name | service-name): (update from -> to | init at version | refactor | etc) + + Additional information. + ``` + * Examples: + * `foo-pkg: init at 2.0.1` + * `bar-pkg: update 3.0 -> 3.1.1` + * `lala-service: add bazBaz option` + * `tata-service: refactor config generation` +* Test your changes. If you work with + * nixpkgs + * update pkg -> + * `nix-env -i pkg-name -f <path to your local nixpkgs folder>` + * add pkg -> + * Make sure it's in `pkgs/top-level/all-packages.nix` + * `nix-env -i pkg-name -f <path to your local nixpkgs folder>` + * _If you don't want to install pkg in you profile_. + * `nix-build -A pkg-attribute-name <path to your local nixpkgs folder>/default.nix` and check results in the folder `result`. It will appear in the same directory where you did `nix-build`. + * If you did `nix-env -i pkg-name` you can do `nix-env -e pkg-name` to uninstall it from your system. + * nixos and its modules + * You can add new module to you `nixos-configuration file` (usually it's `/etc/nixos/configuration.nix`. + And do `sudo nixos-rebuild test -I nixpkgs=<path to your local nixpkgs folder> --fast` +* If you have commits `pkg-name: oh, forgot to insert whitespace`: squash commits in this case. Use `git rebase -i`. +* Rebase you branch against current `master`. + +## Submitting changes + +* Push your changes to your fork of nixpkgs. +* Create pull request. + * Write the title in format `(pkg-name | service): improvement` + * If you update the pkg, write versions `from -> to` + * Write in comment if you have tested your patch. Do not rely much on `TravisCI`. + * If you make an improvement, write why is it good. + * Notify maintainers of the package. For example add to the message: `cc @jagajaga @domenkozar` + +## Hotfixing pull requests + +* Make the appropriate changes in you branch. +* Don't create additional commits. + * `git rebase` + * `git push --force` to your branch. diff --git a/doc/coding-conventions.xml b/doc/coding-conventions.xml index 4967295db085..e7166a64919b 100644 --- a/doc/coding-conventions.xml +++ b/doc/coding-conventions.xml @@ -451,13 +451,18 @@ splitting up an existing category.</para> </listitem> </varlistentry> <varlistentry> - <term>If it’s a <emphasis>desktop environment</emphasis> - (including <emphasis>window managers</emphasis>):</term> + <term>If it’s a <emphasis>desktop environment</emphasis>:</term> <listitem> <para><filename>desktops</filename> (e.g. <filename>kde</filename>, <filename>gnome</filename>, <filename>enlightenment</filename>)</para> </listitem> </varlistentry> <varlistentry> + <term>If it’s a <emphasis>window manager</emphasis>:</term> + <listitem> + <para><filename>applications/window-managers</filename> (e.g. <filename>awesome</filename>, <filename>compiz</filename>, <filename>stumpwm</filename>)</para> + </listitem> + </varlistentry> + <varlistentry> <term>If it’s an <emphasis>application</emphasis>:</term> <listitem> <para>A (typically large) program with a distinct user diff --git a/lib/maintainers.nix b/lib/maintainers.nix index df7a442ac52e..9cc992914a4d 100644 --- a/lib/maintainers.nix +++ b/lib/maintainers.nix @@ -1,11 +1,15 @@ /* -*- coding: utf-8; -*- */ { - /* Add your name and email address here. Keep the list - alphabetically sorted. */ + /* Add your name and email address here. + Keep the list alphabetically sorted. + Prefer the same attrname as your github username, please, + so it's easy to ping a package @maintainer. + */ abaldeau = "Andreas Baldeau <andreas@baldeau.net>"; abbradar = "Nikolay Amiantov <ab@fmap.me>"; + adev = "Adrien Devresse <adev@adev.name>"; aforemny = "Alexander Foremny <alexanderforemny@googlemail.com>"; aflatter = "Alexander Flatter <flatter@fastmail.fm>"; aherrmann = "Andreas Herrmann <andreash87@gmx.ch>"; @@ -18,6 +22,7 @@ AndersonTorres = "Anderson Torres <torres.anderson.85@gmail.com>"; anderspapitto = "Anders Papitto <anderspapitto@gmail.com>"; andres = "Andres Loeh <ksnixos@andres-loeh.de>"; + andrewrk = "Andrew Kelley <superjoe30@gmail.com>"; antono = "Antono Vasiljev <self@antono.info>"; ardumont = "Antoine R. Dumont <eniotna.t@gmail.com>"; aristid = "Aristid Breitkreuz <aristidb@gmail.com>"; @@ -127,8 +132,10 @@ lassulus = "Lassulus <lassulus@gmail.com>"; lethalman = "Luca Bruno <lucabru@src.gnome.org>"; lhvwb = "Nathaniel Baxter <nathaniel.baxter@gmail.com>"; + lihop = "Leroy Hopson <nixos@leroy.geek.nz>"; linquize = "Linquize <linquize@yahoo.com.hk>"; linus = "Linus Arver <linusarver@gmail.com>"; + lnl7 = "Daiderd Jordan <daiderd@gmail.com>"; lovek323 = "Jason O'Conal <jason@oconal.id.au>"; ludo = "Ludovic Courtès <ludo@gnu.org>"; madjar = "Georges Dubus <georges.dubus@compiletoi.net>"; @@ -138,6 +145,7 @@ marcweber = "Marc Weber <marco-oweber@gmx.de>"; matejc = "Matej Cotman <cotman.matej@gmail.com>"; matthiasbeyer = "Matthias Beyer <mail@beyermatthias.de>"; + mbakke = "Marius Bakke <ymse@tuta.io>"; meditans = "Carlo Nucera <meditans@gmail.com>"; meisternu = "Matt Miemiec <meister@krutt.org>"; michelk = "Michel Kuhlmann <michel@kuhlmanns.info>"; diff --git a/lib/modules.nix b/lib/modules.nix index dcede0c46c63..73dbdd371f61 100644 --- a/lib/modules.nix +++ b/lib/modules.nix @@ -17,6 +17,10 @@ rec { evalModules) and the less declarative the module set is. */ evalModules = { modules , prefix ? [] + , # This should only be used for special arguments that need to be evaluated + # when resolving module structure (like in imports). For everything else, + # there's _module.args. + specialArgs ? {} , # This would be remove in the future, Prefer _module.args option instead. args ? {} , # This would be remove in the future, Prefer _module.check option instead. @@ -39,7 +43,7 @@ rec { }; _module.check = mkOption { - type = types.uniq types.bool; + type = types.bool; internal = true; default = check; description = "Whether to check whether all option definitions have matching declarations."; @@ -51,7 +55,7 @@ rec { }; }; - closed = closeModules (modules ++ [ internalModule ]) { inherit config options; lib = import ./.; }; + closed = closeModules (modules ++ [ internalModule ]) (specialArgs // { inherit config options; lib = import ./.; }); # Note: the list of modules is reversed to maintain backward # compatibility with the old module system. Not sure if this is @@ -118,7 +122,7 @@ rec { config = removeAttrs m ["key" "_file" "require" "imports"]; }; - applyIfFunction = f: arg@{ config, options, lib }: if isFunction f then + applyIfFunction = f: arg@{ config, options, lib, ... }: if isFunction f then let # Module arguments are resolved in a strict manner when attribute set # deconstruction is used. As the arguments are now defined with the diff --git a/lib/options.nix b/lib/options.nix index eed43daaeccf..bfc5b5fa2ae8 100644 --- a/lib/options.nix +++ b/lib/options.nix @@ -59,26 +59,21 @@ rec { else if all isInt list && all (x: x == head list) list then head list else throw "Cannot merge definitions of `${showOption loc}' given in ${showFiles (getFiles defs)}."; - /* Obsolete, will remove soon. Specify an option type or apply - function instead. */ - mergeTypedOption = typeName: predicate: merge: loc: list: - let list' = map (x: x.value) list; in - if all predicate list then merge list' - else throw "Expected a ${typeName}."; - - mergeEnableOption = mergeTypedOption "boolean" - (x: true == x || false == x) (fold lib.or false); - - mergeListOption = mergeTypedOption "list" isList concatLists; - - mergeStringOption = mergeTypedOption "string" isString lib.concatStrings; - mergeOneOption = loc: defs: if defs == [] then abort "This case should never happen." else if length defs != 1 then throw "The unique option `${showOption loc}' is defined multiple times, in ${showFiles (getFiles defs)}." else (head defs).value; + /* "Merge" option definitions by checking that they all have the same value. */ + mergeEqualOption = loc: defs: + if defs == [] then abort "This case should never happen." + else fold (def: val: + if def.value != val then + throw "The option `${showOption loc}' has conflicting definitions, in ${showFiles (getFiles defs)}." + else + val) (head defs).value defs; + getValues = map (x: x.value); getFiles = map (x: x.file); diff --git a/lib/types.nix b/lib/types.nix index f22c76616345..0a54a5598f14 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -54,7 +54,7 @@ rec { bool = mkOptionType { name = "boolean"; check = isBool; - merge = loc: fold (x: y: x.value || y) false; + merge = mergeEqualOption; }; int = mkOptionType { diff --git a/maintainers/scripts/gnome-latest.sh b/maintainers/scripts/gnome-latest.sh index 9290b6deaff0..63b309c5a77c 100755 --- a/maintainers/scripts/gnome-latest.sh +++ b/maintainers/scripts/gnome-latest.sh @@ -1,4 +1,4 @@ -#!/bin/sh +#!/usr/bin/env bash GNOME_FTP="ftp.gnome.org/pub/GNOME/sources" diff --git a/nixos/doc/manual/release-notes/rl-unstable.xml b/nixos/doc/manual/release-notes/rl-unstable.xml index cf67014a69dd..fcbf6ed0addc 100644 --- a/nixos/doc/manual/release-notes/rl-unstable.xml +++ b/nixos/doc/manual/release-notes/rl-unstable.xml @@ -153,6 +153,19 @@ nix-env -f "<nixpkgs>" -iA haskellPackages.cabal-install </para> </listitem> +<listitem> + <para> + The OpenBLAS library has been updated to version + <literal>0.2.14</literal>. Support for the + <literal>x86_64-darwin</literal> platform was added. Dynamic + architecture detection was enabled; OpenBLAS now selects + microarchitecture-optimized routines at runtime, so optimal + performance is achieved without the need to rebuild OpenBLAS + locally. OpenBLAS has replaced ATLAS in most packages which use an + optimized BLAS or LAPACK implementation. + </para> +</listitem> + </itemizedlist> </para> diff --git a/nixos/lib/eval-config.nix b/nixos/lib/eval-config.nix index adacbd0863e3..97cb85a957f6 100644 --- a/nixos/lib/eval-config.nix +++ b/nixos/lib/eval-config.nix @@ -47,6 +47,7 @@ in rec { inherit prefix check; modules = modules ++ extraModules ++ baseModules ++ [ pkgsModule ]; args = extraArgs; + specialArgs = { modulesPath = ../modules; }; }) config options; # These are the extra arguments passed to every module. In diff --git a/nixos/lib/make-channel.nix b/nixos/lib/make-channel.nix new file mode 100644 index 000000000000..7764527ffa7e --- /dev/null +++ b/nixos/lib/make-channel.nix @@ -0,0 +1,31 @@ +{ pkgs, nixpkgs, version, versionSuffix }: + +pkgs.releaseTools.makeSourceTarball { + name = "nixos-channel"; + + src = nixpkgs; + + officialRelease = false; # FIXME: fix this in makeSourceTarball + inherit version versionSuffix; + + buildInputs = [ pkgs.nixUnstable ]; + + expr = builtins.readFile ./channel-expr.nix; + + distPhase = '' + rm -rf .git + echo -n $VERSION_SUFFIX > .version-suffix + echo -n ${nixpkgs.rev or nixpkgs.shortRev} > .git-revision + releaseName=nixos-$VERSION$VERSION_SUFFIX + mkdir -p $out/tarballs + mkdir ../$releaseName + cp -prd . ../$releaseName/nixpkgs + chmod -R u+w ../$releaseName + ln -s nixpkgs/nixos ../$releaseName/nixos + echo "$expr" > ../$releaseName/default.nix + NIX_STATE_DIR=$TMPDIR nix-env -f ../$releaseName/default.nix -qaP --meta --xml \* > /dev/null + cd .. + chmod -R u+w $releaseName + tar cfJ $out/tarballs/$releaseName.tar.xz $releaseName + ''; +} diff --git a/nixos/lib/test-driver/Machine.pm b/nixos/lib/test-driver/Machine.pm index db2c1a68692a..41088ed75f7e 100644 --- a/nixos/lib/test-driver/Machine.pm +++ b/nixos/lib/test-driver/Machine.pm @@ -21,7 +21,7 @@ sub new { my ($class, $args) = @_; my $startCommand = $args->{startCommand}; - + my $name = $args->{name}; if (!$name) { $startCommand =~ /run-(.*)-vm$/ if defined $startCommand; @@ -34,7 +34,7 @@ sub new { "qemu-kvm -m 384 " . "-net nic,model=virtio \$QEMU_OPTS "; my $iface = $args->{hdaInterface} || "virtio"; - $startCommand .= "-drive file=" . Cwd::abs_path($args->{hda}) . ",if=$iface,boot=on,werror=report " + $startCommand .= "-drive file=" . Cwd::abs_path($args->{hda}) . ",if=$iface,werror=report " if defined $args->{hda}; $startCommand .= "-cdrom $args->{cdrom} " if defined $args->{cdrom}; @@ -43,8 +43,6 @@ sub new { $startCommand .= "-bios $args->{bios} " if defined $args->{bios}; $startCommand .= $args->{qemuFlags} || ""; - } else { - $startCommand = Cwd::abs_path $startCommand; } my $tmpDir = $ENV{'TMPDIR'} || "/tmp"; @@ -171,7 +169,7 @@ sub start { eval { local $SIG{CHLD} = sub { die "QEMU died prematurely\n"; }; - + # Wait until QEMU connects to the monitor. accept($self->{monitor}, $monitorS) or die; @@ -182,11 +180,11 @@ sub start { $self->{socket}->autoflush(1); }; die "$@" if $@; - + $self->waitForMonitorPrompt; $self->log("QEMU running (pid $pid)"); - + $self->{pid} = $pid; $self->{booted} = 1; } @@ -241,7 +239,7 @@ sub connect { alarm 300; readline $self->{socket} or die "the VM quit before connecting\n"; alarm 0; - + $self->log("connected to guest root shell"); $self->{connected} = 1; @@ -270,7 +268,7 @@ sub isUp { sub execute_ { my ($self, $command) = @_; - + $self->connect; print { $self->{socket} } ("( $command ); echo '|!=EOF' \$?\n"); @@ -453,7 +451,7 @@ sub shutdown { sub crash { my ($self) = @_; return unless $self->{booted}; - + $self->log("forced crash"); $self->sendMonitorCommand("quit"); diff --git a/nixos/maintainers/scripts/ec2/amazon-base-config.nix b/nixos/maintainers/scripts/ec2/amazon-base-config.nix index d23f15e828b2..28317317eab2 100644 --- a/nixos/maintainers/scripts/ec2/amazon-base-config.nix +++ b/nixos/maintainers/scripts/ec2/amazon-base-config.nix @@ -1,5 +1,5 @@ { modulesPath, ...}: { - imports = [ "${modulesPath}/virtualisation/amazon-config.nix" ]; + imports = [ "${modulesPath}/virtualisation/amazon-init.nix" ]; services.journald.rateLimitBurst = 0; } diff --git a/nixos/modules/config/pulseaudio.nix b/nixos/modules/config/pulseaudio.nix index 566130feb6de..2ebc61260558 100644 --- a/nixos/modules/config/pulseaudio.nix +++ b/nixos/modules/config/pulseaudio.nix @@ -12,7 +12,7 @@ let # Forces 32bit pulseaudio and alsaPlugins to be built/supported for apps # using 32bit alsa on 64bit linux. - enable32BitAlsaPlugins = stdenv.isx86_64 && (pkgs_i686.alsaLib != null && pkgs_i686.libpulseaudio != null); + enable32BitAlsaPlugins = cfg.support32Bit && stdenv.isx86_64 && (pkgs_i686.alsaLib != null && pkgs_i686.libpulseaudio != null); ids = config.ids; @@ -78,6 +78,15 @@ in { ''; }; + support32Bit = mkOption { + type = types.bool; + default = false; + description = '' + Whether to include the 32-bit pulseaudio libraries in the systemn or not. + This is only useful on 64-bit systems and currently limited to x86_64-linux. + ''; + }; + configFile = mkOption { type = types.path; description = '' diff --git a/nixos/modules/config/shells-environment.nix b/nixos/modules/config/shells-environment.nix index e5b342afcc41..bff0b2991323 100644 --- a/nixos/modules/config/shells-environment.nix +++ b/nixos/modules/config/shells-environment.nix @@ -63,7 +63,7 @@ in description = '' A list of profiles used to setup the global environment. ''; - type = types.listOf types.string; + type = types.listOf types.str; }; environment.profileRelativeEnvVars = mkOption { diff --git a/nixos/modules/hardware/video/bumblebee.nix b/nixos/modules/hardware/video/bumblebee.nix index e20ebc3041e7..e341eac4a819 100644 --- a/nixos/modules/hardware/video/bumblebee.nix +++ b/nixos/modules/hardware/video/bumblebee.nix @@ -26,7 +26,7 @@ in hardware.bumblebee.group = mkOption { default = "wheel"; example = "video"; - type = types.uniq types.str; + type = types.str; description = ''Group for bumblebee socket''; }; hardware.bumblebee.connectDisplay = mkOption { diff --git a/nixos/modules/installer/cd-dvd/installation-cd-base.nix b/nixos/modules/installer/cd-dvd/installation-cd-base.nix index 5bd10823108c..bc3bd872d2a5 100644 --- a/nixos/modules/installer/cd-dvd/installation-cd-base.nix +++ b/nixos/modules/installer/cd-dvd/installation-cd-base.nix @@ -7,8 +7,7 @@ with lib; { imports = - [ ./channel.nix - ./iso-image.nix + [ ./iso-image.nix # Profiles of this basic installation CD. ../../profiles/all-hardware.nix @@ -21,18 +20,6 @@ with lib; isoImage.volumeID = substring 0 11 "NIXOS_ISO"; - # Make the installer more likely to succeed in low memory - # environments. The kernel's overcommit heustistics bite us - # fairly often, preventing processes such as nix-worker or - # download-using-manifests.pl from forking even if there is - # plenty of free memory. - boot.kernel.sysctl."vm.overcommit_memory" = "1"; - - # To speed up installation a little bit, include the complete stdenv - # in the Nix store on the CD. Archive::Cpio is needed for the - # initrd builder. nixos-artwork is needed for the GRUB background. - isoImage.storeContents = [ pkgs.stdenv pkgs.busybox pkgs.perlPackages.ArchiveCpio pkgs.nixos-artwork ]; - # EFI booting isoImage.makeEfiBootable = true; diff --git a/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix b/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix index f34e789e28c5..4641b8fcf9d1 100644 --- a/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix +++ b/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix @@ -1,14 +1,11 @@ # This module defines a small NixOS installation CD. It does not # contain any graphical stuff. -{ config, pkgs, lib, ... }: +{ config, lib, ... }: { imports = [ ./installation-cd-base.nix ../../profiles/minimal.nix ]; - - # Enable in installer, even if minimal profile disables it - services.nixosManual.enable = lib.mkOverride 999 true; } diff --git a/nixos/modules/misc/assertions.nix b/nixos/modules/misc/assertions.nix index c1be36e98cba..c42de038e61f 100644 --- a/nixos/modules/misc/assertions.nix +++ b/nixos/modules/misc/assertions.nix @@ -21,7 +21,7 @@ with lib; warnings = mkOption { internal = true; default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "The `foo' service is deprecated and will go away soon!" ]; description = '' This option allows modules to show warnings to users during diff --git a/nixos/modules/misc/extra-arguments.nix b/nixos/modules/misc/extra-arguments.nix index c2c8903546d5..ff2ff7cd4322 100644 --- a/nixos/modules/misc/extra-arguments.nix +++ b/nixos/modules/misc/extra-arguments.nix @@ -2,8 +2,6 @@ { _module.args = { - modulesPath = ../.; - pkgs_i686 = import ../../lib/nixpkgs.nix { system = "i686-linux"; config.allowUnfree = true; diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix index d283a633734a..ce935915abf6 100644 --- a/nixos/modules/misc/ids.nix +++ b/nixos/modules/misc/ids.nix @@ -220,6 +220,7 @@ grafana = 196; skydns = 197; ripple-rest = 198; + nix-serve = 199; # When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399! @@ -418,6 +419,7 @@ #grafana = 196; #unused #skydns = 197; #unused #ripple-rest = 198; #unused + #nix-serve = 199; #unused # When adding a gid, make sure it doesn't match an existing # uid. Users and groups with the same name should have equal diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix index 114feb2562db..fb5516c953c2 100644 --- a/nixos/modules/misc/nixpkgs.nix +++ b/nixos/modules/misc/nixpkgs.nix @@ -59,7 +59,7 @@ in }; nixpkgs.system = mkOption { - type = types.uniq types.str; + type = types.str; example = "i686-linux"; description = '' Specifies the Nix platform type for which NixOS should be built. diff --git a/nixos/modules/profiles/all-hardware.nix b/nixos/modules/profiles/all-hardware.nix index 6385ee69500f..99b45228ce4d 100644 --- a/nixos/modules/profiles/all-hardware.nix +++ b/nixos/modules/profiles/all-hardware.nix @@ -40,7 +40,7 @@ "ohci1394" "sbp2" # Virtio (QEMU, KVM etc.) support. - "virtio_net" "virtio_pci" "virtio_blk" "virtio_balloon" "virtio_console" + "virtio_net" "virtio_pci" "virtio_blk" "virtio_scsi" "virtio_balloon" "virtio_console" # Keyboards "usbhid" "hid_apple" "hid_logitech_dj" "hid_lenovo_tpkbd" "hid_roccat" diff --git a/nixos/modules/profiles/installation-device.nix b/nixos/modules/profiles/installation-device.nix index a41d17e51821..946032781f40 100644 --- a/nixos/modules/profiles/installation-device.nix +++ b/nixos/modules/profiles/installation-device.nix @@ -1,5 +1,5 @@ # Provide a basic configuration for installation devices like CDs. -{ config, lib, ... }: +{ config, pkgs, lib, ... }: with lib; @@ -13,10 +13,17 @@ with lib; # Allow "nixos-rebuild" to work properly by providing # /etc/nixos/configuration.nix. ./clone-config.nix + + # Include a copy of Nixpkgs so that nixos-install works out of + # the box. + ../installer/cd-dvd/channel.nix ]; config = { + # Enable in installer, even if the minimal profile disables it. + services.nixosManual.enable = mkForce true; + # Show the manual. services.nixosManual.showManual = true; @@ -43,7 +50,7 @@ with lib; systemd.services.sshd.wantedBy = mkOverride 50 []; # Enable wpa_supplicant, but don't start it by default. - networking.wireless.enable = true; + networking.wireless.enable = mkDefault true; jobs.wpa_supplicant.startOn = mkOverride 50 ""; # Tell the Nix evaluator to garbage collect more aggressively. @@ -51,5 +58,17 @@ with lib; # (yet) have swap set up. environment.variables.GC_INITIAL_HEAP_SIZE = "100000"; + # Make the installer more likely to succeed in low memory + # environments. The kernel's overcommit heustistics bite us + # fairly often, preventing processes such as nix-worker or + # download-using-manifests.pl from forking even if there is + # plenty of free memory. + boot.kernel.sysctl."vm.overcommit_memory" = "1"; + + # To speed up installation a little bit, include the complete + # stdenv in the Nix store on the CD. Archive::Cpio is needed for + # the initrd builder. + system.extraDependencies = [ pkgs.stdenv pkgs.busybox pkgs.perlPackages.ArchiveCpio ]; + }; } diff --git a/nixos/modules/profiles/qemu-guest.nix b/nixos/modules/profiles/qemu-guest.nix index 79890aa7f17c..759fdb7f8e5f 100644 --- a/nixos/modules/profiles/qemu-guest.nix +++ b/nixos/modules/profiles/qemu-guest.nix @@ -4,7 +4,7 @@ { config, pkgs, ... }: { - boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "9p" "9pnet_virtio" ]; + boot.initrd.availableKernelModules = [ "virtio_net" "virtio_pci" "virtio_blk" "virtio_scsi" "9p" "9pnet_virtio" ]; boot.initrd.kernelModules = [ "virtio_balloon" "virtio_console" "virtio_rng" ]; boot.initrd.postDeviceCommands = diff --git a/nixos/modules/programs/ssh.nix b/nixos/modules/programs/ssh.nix index 6ca73eea5f6f..0d1ec500afc4 100644 --- a/nixos/modules/programs/ssh.nix +++ b/nixos/modules/programs/ssh.nix @@ -27,7 +27,7 @@ in programs.ssh = { askPassword = mkOption { - type = types.string; + type = types.str; default = "${pkgs.x11_ssh_askpass}/libexec/x11-ssh-askpass"; description = ''Program used by SSH to ask for passwords.''; }; @@ -77,7 +77,7 @@ in }; agentTimeout = mkOption { - type = types.nullOr types.string; + type = types.nullOr types.str; default = null; example = "1h"; description = '' diff --git a/nixos/modules/security/ca.nix b/nixos/modules/security/ca.nix index 31caab97a65f..88f53eab9b43 100644 --- a/nixos/modules/security/ca.nix +++ b/nixos/modules/security/ca.nix @@ -33,7 +33,7 @@ in }; security.pki.certificates = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = singleton '' NixOS.org diff --git a/nixos/modules/services/audio/mpd.nix b/nixos/modules/services/audio/mpd.nix index 06ba4b9b5acb..5515f827b290 100644 --- a/nixos/modules/services/audio/mpd.nix +++ b/nixos/modules/services/audio/mpd.nix @@ -118,7 +118,7 @@ in { preStart = "mkdir -p ${cfg.dataDir} && chown -R ${cfg.user}:${cfg.group} ${cfg.dataDir}"; script = "exec mpd --no-daemon ${mpdConf}"; serviceConfig = { - User = "mpd"; + User = "${cfg.user}"; PermissionsStartOnly = true; }; }; diff --git a/nixos/modules/services/backup/almir.nix b/nixos/modules/services/backup/almir.nix index ec39a997028a..fbb4ff4034f1 100644 --- a/nixos/modules/services/backup/almir.nix +++ b/nixos/modules/services/backup/almir.nix @@ -95,7 +95,7 @@ in { port = mkOption { default = 35000; - type = types.uniq types.int; + type = types.int; description = '' Port for Almir web server to listen on. ''; diff --git a/nixos/modules/services/backup/bacula.nix b/nixos/modules/services/backup/bacula.nix index c2255f688181..9e3ae66f808b 100644 --- a/nixos/modules/services/backup/bacula.nix +++ b/nixos/modules/services/backup/bacula.nix @@ -182,7 +182,7 @@ in { port = mkOption { default = 9102; - type = types.uniq types.int; + type = types.int; description = '' This specifies the port number on which the Client listens for Director connections. It must agree with the FDPort specified in the Client resource of the Director's configuration file. The default is 9102. ''; @@ -237,7 +237,7 @@ in { port = mkOption { default = 9103; - type = types.uniq types.int; + type = types.int; description = '' Specifies port number on which the Storage daemon listens for Director connections. The default is 9103. ''; @@ -302,7 +302,7 @@ in { port = mkOption { default = 9101; - type = types.uniq types.int; + type = types.int; description = '' Specify the port (a positive integer) on which the Director daemon will listen for Bacula Console connections. This same port number must be specified in the Director resource of the Console configuration file. The default is 9101, so normally this directive need not be specified. This directive should not be used if you specify DirAddresses (N.B plural) directive. ''; diff --git a/nixos/modules/services/continuous-integration/jenkins/default.nix b/nixos/modules/services/continuous-integration/jenkins/default.nix index 29a81f066ab9..ccea85faa3e2 100644 --- a/nixos/modules/services/continuous-integration/jenkins/default.nix +++ b/nixos/modules/services/continuous-integration/jenkins/default.nix @@ -50,7 +50,7 @@ in { port = mkOption { default = 8080; - type = types.uniq types.int; + type = types.int; description = '' Specifies port number on which the jenkins HTTP interface listens. The default is 8080. ''; diff --git a/nixos/modules/services/databases/influxdb.nix b/nixos/modules/services/databases/influxdb.nix index b57ccebae16e..08963f7aab7f 100644 --- a/nixos/modules/services/databases/influxdb.nix +++ b/nixos/modules/services/databases/influxdb.nix @@ -55,7 +55,7 @@ in enable = mkOption { default = false; description = "Whether to enable the influxdb server"; - type = types.uniq types.bool; + type = types.bool; }; package = mkOption { diff --git a/nixos/modules/services/databases/mysql.nix b/nixos/modules/services/databases/mysql.nix index b5919047cc11..1cdecedfc772 100644 --- a/nixos/modules/services/databases/mysql.nix +++ b/nixos/modules/services/databases/mysql.nix @@ -180,7 +180,8 @@ in chown -R ${cfg.user} ${cfg.pidDir} # Make the socket directory - mkdir -m 0755 -p /run/mysqld + mkdir -p /run/mysqld + chmod 0755 /run/mysqld chown -R ${cfg.user} /run/mysqld ''; diff --git a/nixos/modules/services/databases/neo4j.nix b/nixos/modules/services/databases/neo4j.nix index 575034c93ab2..3cf22db7da2b 100644 --- a/nixos/modules/services/databases/neo4j.nix +++ b/nixos/modules/services/databases/neo4j.nix @@ -43,7 +43,7 @@ in { enable = mkOption { description = "Whether to enable neo4j."; default = false; - type = types.uniq types.bool; + type = types.bool; }; package = mkOption { diff --git a/nixos/modules/services/logging/logcheck.nix b/nixos/modules/services/logging/logcheck.nix index 1cd032ffa76b..6069262b4705 100644 --- a/nixos/modules/services/logging/logcheck.nix +++ b/nixos/modules/services/logging/logcheck.nix @@ -192,7 +192,7 @@ in extraGroups = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "postdrop" "mongodb" ]; description = '' Extra groups for the logcheck user, for example to be able to use sendmail, diff --git a/nixos/modules/services/logging/rsyslogd.nix b/nixos/modules/services/logging/rsyslogd.nix index d4b7aa809f00..1ea96b8f1325 100644 --- a/nixos/modules/services/logging/rsyslogd.nix +++ b/nixos/modules/services/logging/rsyslogd.nix @@ -66,7 +66,7 @@ in }; extraParams = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ ]; example = [ "-m 0" ]; description = '' diff --git a/nixos/modules/services/logging/syslogd.nix b/nixos/modules/services/logging/syslogd.nix index 325868079e22..a0f8e89fa691 100644 --- a/nixos/modules/services/logging/syslogd.nix +++ b/nixos/modules/services/logging/syslogd.nix @@ -83,7 +83,7 @@ in }; extraParams = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ ]; example = [ "-m 0" ]; description = '' diff --git a/nixos/modules/services/mail/opensmtpd.nix b/nixos/modules/services/mail/opensmtpd.nix index fbc4b1d7d8a8..a3e50b422920 100644 --- a/nixos/modules/services/mail/opensmtpd.nix +++ b/nixos/modules/services/mail/opensmtpd.nix @@ -24,7 +24,7 @@ in { }; extraServerArgs = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "-v" "-P mta" ]; description = '' diff --git a/nixos/modules/services/misc/apache-kafka.nix b/nixos/modules/services/misc/apache-kafka.nix index 90555ebc468b..f6198e03bae5 100644 --- a/nixos/modules/services/misc/apache-kafka.nix +++ b/nixos/modules/services/misc/apache-kafka.nix @@ -33,7 +33,7 @@ in { enable = mkOption { description = "Whether to enable Apache Kafka."; default = false; - type = types.uniq types.bool; + type = types.bool; }; brokerId = mkOption { @@ -108,7 +108,7 @@ in { "-Djava.awt.headless=true" "-Djava.net.preferIPv4Stack=true" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "-Djava.net.preferIPv4Stack=true" "-Dcom.sun.management.jmxremote" @@ -116,11 +116,19 @@ in { ]; }; + package = mkOption { + description = "The kafka package to use"; + + default = pkgs.apacheKafka; + + type = types.package; + }; + }; config = mkIf cfg.enable { - environment.systemPackages = [pkgs.apacheKafka]; + environment.systemPackages = [cfg.package]; users.extraUsers = singleton { name = "apache-kafka"; @@ -136,7 +144,7 @@ in { serviceConfig = { ExecStart = '' ${pkgs.jre}/bin/java \ - -cp "${pkgs.apacheKafka}/libs/*:${configDir}" \ + -cp "${cfg.package}/libs/*:${configDir}" \ ${toString cfg.jvmOptions} \ kafka.Kafka \ ${configDir}/server.properties diff --git a/nixos/modules/services/misc/disnix.nix b/nixos/modules/services/misc/disnix.nix index 48bb9e4293e7..c439efe9f8e7 100644 --- a/nixos/modules/services/misc/disnix.nix +++ b/nixos/modules/services/misc/disnix.nix @@ -67,7 +67,7 @@ in ###### implementation config = mkIf cfg.enable { - environment.systemPackages = [ pkgs.disnix ] ++ optional cfg.useWebServiceInterface pkgs.DisnixWebService; + environment.systemPackages = [ pkgs.disnix pkgs.dysnomia ] ++ optional cfg.useWebServiceInterface pkgs.DisnixWebService; services.dbus.enable = true; services.dbus.packages = [ pkgs.disnix ]; diff --git a/nixos/modules/services/misc/gpsd.nix b/nixos/modules/services/misc/gpsd.nix index 4a677f33fa0c..a4a4c7b5d937 100644 --- a/nixos/modules/services/misc/gpsd.nix +++ b/nixos/modules/services/misc/gpsd.nix @@ -54,7 +54,7 @@ in }; port = mkOption { - type = types.uniq types.int; + type = types.int; default = 2947; description = '' The port where to listen for TCP connections. @@ -62,7 +62,7 @@ in }; debugLevel = mkOption { - type = types.uniq types.int; + type = types.int; default = 0; description = '' The debugging level. diff --git a/nixos/modules/services/misc/mediatomb.nix b/nixos/modules/services/misc/mediatomb.nix index 23227548039c..40ec2831ff09 100644 --- a/nixos/modules/services/misc/mediatomb.nix +++ b/nixos/modules/services/misc/mediatomb.nix @@ -49,10 +49,10 @@ let </server> <import hidden-files="no"> <scripting script-charset="UTF-8"> - <common-script>/nix/store/cngbzn39vidd6jm4wgzxfafqll74ybfa-mediatomb-0.12.1/share/mediatomb/js/common.js</common-script> - <playlist-script>/nix/store/cngbzn39vidd6jm4wgzxfafqll74ybfa-mediatomb-0.12.1/share/mediatomb/js/playlists.js</playlist-script> + <common-script>${pkgs.mediatomb}/share/mediatomb/js/common.js</common-script> + <playlist-script>${pkgs.mediatomb}/share/mediatomb/js/playlists.js</playlist-script> <virtual-layout type="builtin"> - <import-script>/nix/store/cngbzn39vidd6jm4wgzxfafqll74ybfa-mediatomb-0.12.1/share/mediatomb/js/import.js</import-script> + <import-script>${pkgs.mediatomb}/share/mediatomb/js/import.js</import-script> </virtual-layout> </scripting> <mappings> @@ -230,6 +230,13 @@ in { ''; }; + interface = mkOption { + default = ""; + description = '' + A specific interface to bind to. + ''; + }; + uuid = mkOption { default = "fdfc8a4e-a3ad-4c1d-b43d-a2eedb03a687"; description = '' @@ -256,7 +263,7 @@ in { after = [ "local-fs.target" "network.target" ]; wantedBy = [ "multi-user.target" ]; path = [ pkgs.mediatomb ]; - serviceConfig.ExecStart = "${pkgs.mediatomb}/bin/mediatomb -p ${toString cfg.port} ${if cfg.customCfg then "" else "-c ${mtConf}"} -m ${cfg.dataDir}"; + serviceConfig.ExecStart = "${pkgs.mediatomb}/bin/mediatomb -p ${toString cfg.port} ${if cfg.interface!="" then "-e ${cfg.interface}" else ""} ${if cfg.customCfg then "" else "-c ${mtConf}"} -m ${cfg.dataDir}"; serviceConfig.User = "${cfg.user}"; }; diff --git a/nixos/modules/services/misc/mesos-master.nix b/nixos/modules/services/misc/mesos-master.nix index 52f08c53b1dc..497646b2b418 100644 --- a/nixos/modules/services/misc/mesos-master.nix +++ b/nixos/modules/services/misc/mesos-master.nix @@ -13,7 +13,7 @@ in { enable = mkOption { description = "Whether to enable the Mesos Master."; default = false; - type = types.uniq types.bool; + type = types.bool; }; port = mkOption { @@ -45,7 +45,7 @@ in { See https://mesos.apache.org/documentation/latest/configuration/ ''; default = [ "" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "--credentials=VALUE" ]; }; diff --git a/nixos/modules/services/misc/mesos-slave.nix b/nixos/modules/services/misc/mesos-slave.nix index 811aa812c8d9..8c29734813a1 100644 --- a/nixos/modules/services/misc/mesos-slave.nix +++ b/nixos/modules/services/misc/mesos-slave.nix @@ -21,7 +21,7 @@ in { enable = mkOption { description = "Whether to enable the Mesos Slave."; default = false; - type = types.uniq types.bool; + type = types.bool; }; ip = mkOption { @@ -70,7 +70,7 @@ in { See https://mesos.apache.org/documentation/latest/configuration/ ''; default = [ "" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "--gc_delay=3days" ]; }; diff --git a/nixos/modules/services/misc/nix-daemon.nix b/nixos/modules/services/misc/nix-daemon.nix index 42a9d46f1d63..6d25fef45768 100644 --- a/nixos/modules/services/misc/nix-daemon.nix +++ b/nixos/modules/services/misc/nix-daemon.nix @@ -63,7 +63,7 @@ in package = mkOption { type = types.package; - default = pkgs.nixUnstable; + default = pkgs.nix; description = '' This option specifies the Nix package instance to use throughout the system. ''; diff --git a/nixos/modules/services/misc/zookeeper.nix b/nixos/modules/services/misc/zookeeper.nix index 47675b8876cc..4ce692b6f6a5 100644 --- a/nixos/modules/services/misc/zookeeper.nix +++ b/nixos/modules/services/misc/zookeeper.nix @@ -27,7 +27,7 @@ in { enable = mkOption { description = "Whether to enable Zookeeper."; default = false; - type = types.uniq types.bool; + type = types.bool; }; port = mkOption { @@ -94,7 +94,7 @@ in { extraCmdLineOptions = mkOption { description = "Extra command line options for the Zookeeper launcher."; default = [ "-Dcom.sun.management.jmxremote" "-Dcom.sun.management.jmxremote.local.only=true" ]; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "-Djava.net.preferIPv4Stack=true" "-Dcom.sun.management.jmxremote" "-Dcom.sun.management.jmxremote.local.only=true" ]; }; diff --git a/nixos/modules/services/monitoring/apcupsd.nix b/nixos/modules/services/monitoring/apcupsd.nix index 6cd0254dbe34..9abd6e9ab641 100644 --- a/nixos/modules/services/monitoring/apcupsd.nix +++ b/nixos/modules/services/monitoring/apcupsd.nix @@ -74,7 +74,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Whether to enable the APC UPS daemon. apcupsd monitors your UPS and permits orderly shutdown of your computer in the event of a power diff --git a/nixos/modules/services/monitoring/dd-agent.nix b/nixos/modules/services/monitoring/dd-agent.nix index dc51a7c74866..3e90393a662d 100644 --- a/nixos/modules/services/monitoring/dd-agent.nix +++ b/nixos/modules/services/monitoring/dd-agent.nix @@ -23,6 +23,7 @@ let # proxy_password: password # tags: mytag0, mytag1 + ${optionalString (cfg.tags != null ) "tags: ${concatStringsSep "," cfg.tags }"} # collect_ec2_tags: no # recent_point_threshold: 30 @@ -80,6 +81,13 @@ in { type = types.str; }; + tags = mkOption { + description = "The tags to mark this Datadog agent"; + example = [ "test" "service" ]; + default = null; + type = types.nullOr (types.listOf types.str); + }; + hostname = mkOption { description = "The hostname to show in the Datadog dashboard (optional)"; default = null; diff --git a/nixos/modules/services/monitoring/graphite.nix b/nixos/modules/services/monitoring/graphite.nix index 2a572a6a065c..fb30daba1dc1 100644 --- a/nixos/modules/services/monitoring/graphite.nix +++ b/nixos/modules/services/monitoring/graphite.nix @@ -67,7 +67,7 @@ in { enable = mkOption { description = "Whether to enable graphite web frontend."; default = false; - type = types.uniq types.bool; + type = types.bool; }; host = mkOption { @@ -95,7 +95,7 @@ in { <link xlink:href="http://graphite-api.readthedocs.org/en/latest/"/> ''; default = false; - type = types.uniq types.bool; + type = types.bool; }; finders = mkOption { @@ -177,7 +177,7 @@ in { enableCache = mkOption { description = "Whether to enable carbon cache, the graphite storage daemon."; default = false; - type = types.uniq types.bool; + type = types.bool; }; storageAggregation = mkOption { @@ -234,7 +234,7 @@ in { enableRelay = mkOption { description = "Whether to enable carbon relay, the carbon replication and sharding service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; relayRules = mkOption { @@ -251,7 +251,7 @@ in { enableAggregator = mkOption { description = "Whether to enable carbon agregator, the carbon buffering service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; aggregationRules = mkOption { @@ -269,7 +269,7 @@ in { enable = mkOption { description = "Whether to enable seyren service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; port = mkOption { @@ -319,7 +319,7 @@ in { <link xlink:href="https://github.com/seatgeek/graphite-pager"/> ''; default = false; - type = types.uniq types.bool; + type = types.bool; }; redisUrl = mkOption { diff --git a/nixos/modules/services/monitoring/scollector.nix b/nixos/modules/services/monitoring/scollector.nix index 0143d2e327bd..179c587431ea 100644 --- a/nixos/modules/services/monitoring/scollector.nix +++ b/nixos/modules/services/monitoring/scollector.nix @@ -73,7 +73,7 @@ in { }; collectors = mkOption { - type = types.attrs; + type = with types; attrsOf (listOf path); default = {}; example = literalExample "{ 0 = [ \"\${postgresStats}/bin/collect-stats\" ]; }"; description = '' diff --git a/nixos/modules/services/monitoring/statsd.nix b/nixos/modules/services/monitoring/statsd.nix index 7d7ca27bb2f0..d9e0b83e2389 100644 --- a/nixos/modules/services/monitoring/statsd.nix +++ b/nixos/modules/services/monitoring/statsd.nix @@ -37,7 +37,7 @@ in enable = mkOption { description = "Whether to enable statsd stats aggregation service"; default = false; - type = types.uniq types.bool; + type = types.bool; }; host = mkOption { @@ -49,7 +49,7 @@ in port = mkOption { description = "Port that stats listens for messages on over UDP"; default = 8125; - type = types.uniq types.int; + type = types.int; }; mgmt_address = mkOption { @@ -61,7 +61,7 @@ in mgmt_port = mkOption { description = "Port to run the management TCP interface on"; default = 8126; - type = types.uniq types.int; + type = types.int; }; backends = mkOption { diff --git a/nixos/modules/services/monitoring/ups.nix b/nixos/modules/services/monitoring/ups.nix index cc9026f768a8..eb478f7da65d 100644 --- a/nixos/modules/services/monitoring/ups.nix +++ b/nixos/modules/services/monitoring/ups.nix @@ -32,7 +32,7 @@ let shutdownOrder = mkOption { default = 0; - type = types.uniq types.int; + type = types.int; description = '' When you have multiple UPSes on your system, you usually need to turn them off in a certain order. upsdrvctl shuts down all the @@ -63,7 +63,7 @@ let directives = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; description = '' List of configuration directives for this UPS. ''; @@ -151,7 +151,7 @@ in maxStartDelay = mkOption { default = 45; - type = types.uniq types.int; + type = types.int; description = '' This can be set as a global variable above your first UPS definition and it can also be set in a UPS section. This value diff --git a/nixos/modules/services/network-filesystems/samba.nix b/nixos/modules/services/network-filesystems/samba.nix index 8b3741bca0af..bbf21634c368 100644 --- a/nixos/modules/services/network-filesystems/samba.nix +++ b/nixos/modules/services/network-filesystems/samba.nix @@ -137,7 +137,7 @@ in nsswins = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Whether to enable the WINS NSS (Name Service Switch) plug-in. Enabling it allows applications to resolve WINS/NetBIOS names (a.k.a. diff --git a/nixos/modules/services/networking/atftpd.nix b/nixos/modules/services/networking/atftpd.nix index 47465ba948a9..d875ddc63528 100644 --- a/nixos/modules/services/networking/atftpd.nix +++ b/nixos/modules/services/networking/atftpd.nix @@ -18,7 +18,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Whenever to enable the atftpd TFTP server. ''; @@ -26,7 +26,7 @@ in root = mkOption { default = "/var/empty"; - type = types.uniq types.string; + type = types.str; description = '' Document root directory for the atftpd. ''; diff --git a/nixos/modules/services/networking/dnsmasq.nix b/nixos/modules/services/networking/dnsmasq.nix index 18086154b6b0..4a812167bb5f 100644 --- a/nixos/modules/services/networking/dnsmasq.nix +++ b/nixos/modules/services/networking/dnsmasq.nix @@ -45,7 +45,7 @@ in }; servers = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "8.8.8.8" "8.8.4.4" ]; description = '' diff --git a/nixos/modules/services/networking/firewall.nix b/nixos/modules/services/networking/firewall.nix index b05a640e11fd..40681f5b957a 100644 --- a/nixos/modules/services/networking/firewall.nix +++ b/nixos/modules/services/networking/firewall.nix @@ -287,7 +287,7 @@ in }; networking.firewall.trustedInterfaces = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; description = '' Traffic coming in from these interfaces will be accepted @@ -379,7 +379,7 @@ in networking.firewall.connectionTrackingModules = mkOption { default = [ "ftp" ]; example = [ "ftp" "irc" "sane" "sip" "tftp" "amanda" "h323" "netbios_sn" "pptp" "snmp" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = '' List of connection-tracking helpers that are auto-loaded. diff --git a/nixos/modules/services/networking/freenet.nix b/nixos/modules/services/networking/freenet.nix index e9cacf4a16e8..3903a2c708cb 100644 --- a/nixos/modules/services/networking/freenet.nix +++ b/nixos/modules/services/networking/freenet.nix @@ -20,13 +20,13 @@ in services.freenet = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "Enable the Freenet daemon"; }; nice = mkOption { - type = types.uniq types.int; + type = types.int; default = 10; description = "Set the nice level for the Freenet daemon"; }; diff --git a/nixos/modules/services/networking/iodined.nix b/nixos/modules/services/networking/iodined.nix index bc0fbb42c99d..6bfe62e6261c 100644 --- a/nixos/modules/services/networking/iodined.nix +++ b/nixos/modules/services/networking/iodined.nix @@ -20,13 +20,13 @@ in services.iodined = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "Enable iodine, ip over dns daemon"; }; client = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "Start iodine in client mode"; }; diff --git a/nixos/modules/services/networking/kippo.nix b/nixos/modules/services/networking/kippo.nix index d2045c9efc58..68f26eefe27e 100644 --- a/nixos/modules/services/networking/kippo.nix +++ b/nixos/modules/services/networking/kippo.nix @@ -16,12 +16,12 @@ rec { services.kippo = { enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = ''Enable the kippo honeypot ssh server.''; }; port = mkOption { default = 2222; - type = types.uniq types.int; + type = types.int; description = ''TCP port number for kippo to bind to.''; }; hostname = mkOption { diff --git a/nixos/modules/services/networking/minidlna.nix b/nixos/modules/services/networking/minidlna.nix index 989ee4d91af9..51850496e2c9 100644 --- a/nixos/modules/services/networking/minidlna.nix +++ b/nixos/modules/services/networking/minidlna.nix @@ -30,7 +30,7 @@ in }; services.minidlna.mediaDirs = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "/data/media" "V,/home/alice/video" ]; description = diff --git a/nixos/modules/services/networking/networkmanager.nix b/nixos/modules/services/networking/networkmanager.nix index 60f380f024ba..adbc6099c95a 100644 --- a/nixos/modules/services/networking/networkmanager.nix +++ b/nixos/modules/services/networking/networkmanager.nix @@ -118,7 +118,7 @@ in { }; appendNameservers = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; description = '' A list of name servers that should be appended @@ -127,7 +127,7 @@ in { }; insertNameservers = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; description = '' A list of name servers that should be inserted before diff --git a/nixos/modules/services/networking/nix-serve.nix b/nixos/modules/services/networking/nix-serve.nix index c2c579c3177e..4f8b9357a828 100644 --- a/nixos/modules/services/networking/nix-serve.nix +++ b/nixos/modules/services/networking/nix-serve.nix @@ -26,6 +26,14 @@ in ''; }; + secretKeyFile = mkOption { + type = types.nullOr types.str; + default = null; + description = '' + The path to the file used for signing derivation data. + ''; + }; + extraParams = mkOption { type = types.string; default = ""; @@ -44,13 +52,19 @@ in path = [ config.nix.package pkgs.bzip2 ]; environment.NIX_REMOTE = "daemon"; + environment.NIX_SECRET_KEY_FILE = cfg.secretKeyFile; serviceConfig = { ExecStart = "${pkgs.nix-serve}/bin/nix-serve " + "--port ${cfg.bindAddress}:${toString cfg.port} ${cfg.extraParams}"; - User = "nobody"; + User = "nix-serve"; Group = "nogroup"; }; }; + + users.extraUsers.nix-serve = { + description = "Nix-serve user"; + uid = config.ids.uids.nix-serve; + }; }; } diff --git a/nixos/modules/services/networking/notbit.nix b/nixos/modules/services/networking/notbit.nix index 2e1412ff7c83..a96e181cb808 100644 --- a/nixos/modules/services/networking/notbit.nix +++ b/nixos/modules/services/networking/notbit.nix @@ -31,7 +31,7 @@ with lib; services.notbit = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Enables the notbit daemon and provides a sendmail binary named `notbit-system-sendmail` for sending mail over the system instance of notbit. Users must be in the notbit group in order to send mail over the system notbit instance. Currently mail recipt is not supported. @@ -39,13 +39,13 @@ with lib; }; port = mkOption { - type = types.uniq types.int; + type = types.int; default = 8444; description = "The port which the daemon listens for other bitmessage clients"; }; nice = mkOption { - type = types.uniq types.int; + type = types.int; default = 10; description = "Set the nice level for the notbit daemon"; }; @@ -65,19 +65,19 @@ with lib; }; specifiedPeersOnly = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "If true, notbit will only connect to peers specified by the peers option."; }; allowPrivateAddresses = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "If true, notbit will allow connections to to RFC 1918 addresses."; }; noBootstrap = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = "If true, notbit will not bootstrap an initial peerlist from bitmessage.org servers"; }; diff --git a/nixos/modules/services/networking/ntopng.nix b/nixos/modules/services/networking/ntopng.nix index ab86f1a5b2b4..c15257117137 100644 --- a/nixos/modules/services/networking/ntopng.nix +++ b/nixos/modules/services/networking/ntopng.nix @@ -57,7 +57,7 @@ in http-port = mkOption { default = 3000; - type = types.uniq types.int; + type = types.int; description = '' Sets the HTTP port of the embedded web server. ''; diff --git a/nixos/modules/services/networking/polipo.nix b/nixos/modules/services/networking/polipo.nix index 51179d9120fe..847fc88ead4c 100644 --- a/nixos/modules/services/networking/polipo.nix +++ b/nixos/modules/services/networking/polipo.nix @@ -42,7 +42,7 @@ in }; allowedClients = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ "127.0.0.1" "::1" ]; example = [ "127.0.0.1" "::1" "134.157.168.0/24" "2001:660:116::/48" ]; description = '' diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix index 14d516ddbb66..bc89ea2d3cd3 100644 --- a/nixos/modules/services/networking/ssh/sshd.nix +++ b/nixos/modules/services/networking/ssh/sshd.nix @@ -234,7 +234,7 @@ in ]; options = { hostNames = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; description = '' A list of host names and/or IP numbers used for accessing diff --git a/nixos/modules/services/networking/unifi.nix b/nixos/modules/services/networking/unifi.nix index d6c8e0dc7a5c..fd9e58f24a40 100644 --- a/nixos/modules/services/networking/unifi.nix +++ b/nixos/modules/services/networking/unifi.nix @@ -25,7 +25,7 @@ in options = { services.unifi.enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Whether or not to enable the unifi controller service. diff --git a/nixos/modules/services/networking/wpa_supplicant.nix b/nixos/modules/services/networking/wpa_supplicant.nix index e2d34ea079c5..9e04bd401906 100644 --- a/nixos/modules/services/networking/wpa_supplicant.nix +++ b/nixos/modules/services/networking/wpa_supplicant.nix @@ -43,7 +43,7 @@ in }; interfaces = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = []; example = [ "wlan0" "wlan1" ]; description = '' diff --git a/nixos/modules/services/networking/znc.nix b/nixos/modules/services/networking/znc.nix index b39aea04521b..196a14dd40ed 100644 --- a/nixos/modules/services/networking/znc.nix +++ b/nixos/modules/services/networking/znc.nix @@ -144,7 +144,7 @@ in */ confOptions = { modules = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ "partyline" "webadmin" "adminlog" "log" ]; example = [ "partyline" "webadmin" "adminlog" "log" ]; description = '' @@ -153,7 +153,7 @@ in }; userModules = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ ]; example = [ "fish" "push" ]; description = '' diff --git a/nixos/modules/services/scheduling/chronos.nix b/nixos/modules/services/scheduling/chronos.nix index f36b886a744b..db1f0f5f00c9 100644 --- a/nixos/modules/services/scheduling/chronos.nix +++ b/nixos/modules/services/scheduling/chronos.nix @@ -13,7 +13,7 @@ in { enable = mkOption { description = "Whether to enable graphite web frontend."; default = false; - type = types.uniq types.bool; + type = types.bool; }; httpPort = mkOption { diff --git a/nixos/modules/services/scheduling/marathon.nix b/nixos/modules/services/scheduling/marathon.nix index b9f4a808b0ce..4e837c62dc11 100644 --- a/nixos/modules/services/scheduling/marathon.nix +++ b/nixos/modules/services/scheduling/marathon.nix @@ -12,7 +12,7 @@ in { options.services.marathon = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Whether to enable the marathon mesos framework. diff --git a/nixos/modules/services/search/elasticsearch.nix b/nixos/modules/services/search/elasticsearch.nix index 12f163db463d..64620bf16041 100644 --- a/nixos/modules/services/search/elasticsearch.nix +++ b/nixos/modules/services/search/elasticsearch.nix @@ -34,7 +34,7 @@ in { enable = mkOption { description = "Whether to enable elasticsearch."; default = false; - type = types.uniq types.bool; + type = types.bool; }; host = mkOption { @@ -102,7 +102,7 @@ in { extraCmdLineOptions = mkOption { description = "Extra command line options for the elasticsearch launcher."; default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = [ "-Djava.net.preferIPv4Stack=true" ]; }; diff --git a/nixos/modules/services/torrent/peerflix.nix b/nixos/modules/services/torrent/peerflix.nix index 0360deac08bb..38fbd3b226cd 100644 --- a/nixos/modules/services/torrent/peerflix.nix +++ b/nixos/modules/services/torrent/peerflix.nix @@ -20,7 +20,7 @@ in { enable = mkOption { description = "Whether to enable peerflix service."; default = false; - type = types.uniq types.bool; + type = types.bool; }; stateDir = mkOption { diff --git a/nixos/modules/services/torrent/transmission.nix b/nixos/modules/services/torrent/transmission.nix index 135113b3ceb1..cf548bc696ca 100644 --- a/nixos/modules/services/torrent/transmission.nix +++ b/nixos/modules/services/torrent/transmission.nix @@ -27,7 +27,7 @@ in options = { services.transmission = { enable = mkOption { - type = types.uniq types.bool; + type = types.bool; default = false; description = '' Whether or not to enable the headless Transmission BitTorrent daemon. @@ -66,7 +66,7 @@ in }; port = mkOption { - type = types.uniq types.int; + type = types.int; default = 9091; description = "TCP port number to run the RPC/web interface."; }; diff --git a/nixos/modules/services/web-servers/lighttpd/cgit.nix b/nixos/modules/services/web-servers/lighttpd/cgit.nix index 34b2fa600ad9..c8590e6a54e1 100644 --- a/nixos/modules/services/web-servers/lighttpd/cgit.nix +++ b/nixos/modules/services/web-servers/lighttpd/cgit.nix @@ -15,7 +15,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' If true, enable cgit (fast web interface for git repositories) as a sub-service in lighttpd. cgit will be accessible at diff --git a/nixos/modules/services/web-servers/lighttpd/default.nix b/nixos/modules/services/web-servers/lighttpd/default.nix index 06f310eeb933..2c662c0aead9 100644 --- a/nixos/modules/services/web-servers/lighttpd/default.nix +++ b/nixos/modules/services/web-servers/lighttpd/default.nix @@ -122,7 +122,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Enable the lighttpd web server. ''; @@ -130,7 +130,7 @@ in port = mkOption { default = 80; - type = types.uniq types.int; + type = types.int; description = '' TCP port number for lighttpd to bind to. ''; @@ -146,7 +146,7 @@ in mod_userdir = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' If true, requests in the form /~user/page.html are rewritten to take the file public_html/page.html from the home directory of the user. @@ -168,7 +168,7 @@ in mod_status = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' Show server status overview at /server-status, statistics at /server-statistics and list of loaded modules at /server-config. diff --git a/nixos/modules/services/web-servers/lighttpd/gitweb.nix b/nixos/modules/services/web-servers/lighttpd/gitweb.nix index ef7072ecba3a..f12cc9734465 100644 --- a/nixos/modules/services/web-servers/lighttpd/gitweb.nix +++ b/nixos/modules/services/web-servers/lighttpd/gitweb.nix @@ -17,7 +17,7 @@ in enable = mkOption { default = false; - type = types.uniq types.bool; + type = types.bool; description = '' If true, enable gitweb in lighttpd. Access it at http://yourserver/gitweb ''; diff --git a/nixos/modules/services/x11/display-managers/default.nix b/nixos/modules/services/x11/display-managers/default.nix index c5012dbb5e30..736621a14a43 100644 --- a/nixos/modules/services/x11/display-managers/default.nix +++ b/nixos/modules/services/x11/display-managers/default.nix @@ -56,7 +56,7 @@ let if [ -z "$_INHIBITION_LOCK_TAKEN" ]; then export _INHIBITION_LOCK_TAKEN=1 if ! ${config.systemd.package}/bin/loginctl show-session $XDG_SESSION_ID | grep -q '^RemoteHost='; then - exec ${config.systemd.package}/bin/systemd-inhibit --what=handle-lid-switch:handle-power-key "$0" "$sessionType" + exec ${config.systemd.package}/bin/systemd-inhibit --what=handle-lid-switch:handle-power-key --why="See NixOS configuration option 'services.xserver.displayManager.desktopManagerHandlesLidAndPower' for more information." "$0" "$sessionType" fi fi @@ -165,6 +165,7 @@ let Type=XSession TryExec=${cfg.displayManager.session.script} Exec=${cfg.displayManager.session.script} '${n}' + X-GDM-BypassXsession=true Name=${n} Comment= EODESKTOP diff --git a/nixos/modules/services/x11/redshift.nix b/nixos/modules/services/x11/redshift.nix index d73b58de6c08..99d19f6ab151 100644 --- a/nixos/modules/services/x11/redshift.nix +++ b/nixos/modules/services/x11/redshift.nix @@ -14,24 +14,24 @@ in { services.redshift.latitude = mkOption { description = "Your current latitude"; - type = types.uniq types.string; + type = types.str; }; services.redshift.longitude = mkOption { description = "Your current longitude"; - type = types.uniq types.string; + type = types.str; }; services.redshift.temperature = { day = mkOption { description = "Colour temperature to use during day time"; default = 5500; - type = types.uniq types.int; + type = types.int; }; night = mkOption { description = "Colour temperature to use during night time"; default = 3700; - type = types.uniq types.int; + type = types.int; }; }; @@ -39,12 +39,12 @@ in { day = mkOption { description = "Screen brightness to apply during the day (between 0.1 and 1.0)"; default = "1"; - type = types.uniq types.string; + type = types.str; }; night = mkOption { description = "Screen brightness to apply during the night (between 0.1 and 1.0)"; default = "1"; - type = types.uniq types.string; + type = types.str; }; }; }; diff --git a/nixos/modules/services/x11/unclutter.nix b/nixos/modules/services/x11/unclutter.nix index 556d9e187fdd..6e8719e1053f 100644 --- a/nixos/modules/services/x11/unclutter.nix +++ b/nixos/modules/services/x11/unclutter.nix @@ -13,7 +13,7 @@ in { services.unclutter.arguments = mkOption { description = "Arguments to pass to unclutter command"; default = "-idle 1"; - type = types.uniq types.string; + type = types.str; }; }; diff --git a/nixos/modules/services/x11/xserver.nix b/nixos/modules/services/x11/xserver.nix index 5198864ef6ef..9fddc6a72104 100644 --- a/nixos/modules/services/x11/xserver.nix +++ b/nixos/modules/services/x11/xserver.nix @@ -469,6 +469,11 @@ in environment.pathsToLink = [ "/etc/xdg" "/share/xdg" "/share/applications" "/share/icons" "/share/pixmaps" ]; + # The default max inotify watches is 8192. + # Nowadays most apps require a good number of inotify watches, + # the value below is used by default on several other distros. + boot.kernel.sysctl."fs.inotify.max_user_watches" = mkDefault 524288; + systemd.defaultUnit = mkIf cfg.autorun "graphical.target"; systemd.services.display-manager = diff --git a/nixos/modules/system/boot/kernel.nix b/nixos/modules/system/boot/kernel.nix index 0cae9cb844c8..63a095be6311 100644 --- a/nixos/modules/system/boot/kernel.nix +++ b/nixos/modules/system/boot/kernel.nix @@ -159,7 +159,7 @@ in boot.kernel.sysctl."kernel.printk" = config.boot.consoleLogLevel; - boot.kernelModules = [ "loop" "configs" ]; + boot.kernelModules = [ "loop" "configs" "atkbd" ]; boot.initrd.availableKernelModules = [ # Note: most of these (especially the SATA/PATA modules) diff --git a/nixos/modules/system/boot/loader/grub/grub.nix b/nixos/modules/system/boot/loader/grub/grub.nix index 0b6333ab573b..3c879450ba6d 100644 --- a/nixos/modules/system/boot/loader/grub/grub.nix +++ b/nixos/modules/system/boot/loader/grub/grub.nix @@ -27,8 +27,13 @@ let f = x: if x == null then "" else "" + x; - grubConfig = args: pkgs.writeText "grub-config.xml" (builtins.toXML - { splashImage = f config.boot.loader.grub.splashImage; + grubConfig = args: + let + efiSysMountPoint = if args.efiSysMountPoint == null then args.path else args.efiSysMountPoint; + efiSysMountPoint' = replaceChars [ "/" ] [ "-" ] efiSysMountPoint; + in + pkgs.writeText "grub-config.xml" (builtins.toXML + { splashImage = f cfg.splashImage; grub = f grub; grubTarget = f (grub.grubTarget or ""); shell = "${pkgs.stdenv.shell}"; @@ -36,13 +41,15 @@ let grubEfi = f grubEfi; grubTargetEfi = if cfg.efiSupport && (cfg.version == 2) then f (grubEfi.grubTarget or "") else ""; bootPath = args.path; - efiSysMountPoint = if args.efiSysMountPoint == null then args.path else args.efiSysMountPoint; + storePath = config.boot.loader.grub.storePath; + bootloaderId = if args.efiBootloaderId == null then "NixOS${efiSysMountPoint'}" else args.efiBootloaderId; + inherit efiSysMountPoint; inherit (args) devices; inherit (efi) canTouchEfiVariables; inherit (cfg) version extraConfig extraPerEntryConfig extraEntries extraEntriesBeforeNixOS extraPrepareConfig configurationLimit copyKernels timeout - default fsIdentifier efiSupport; + default fsIdentifier efiSupport gfxmodeEfi gfxmodeBios; path = (makeSearchPath "bin" ([ pkgs.coreutils pkgs.gnused pkgs.gnugrep pkgs.findutils pkgs.diffutils pkgs.btrfsProgs pkgs.utillinux ] ++ (if cfg.efiSupport && (cfg.version == 2) then [pkgs.efibootmgr ] else []) @@ -141,6 +148,17 @@ in ''; }; + efiBootloaderId = mkOption { + default = null; + example = "NixOS-fsid"; + type = types.nullOr types.str; + description = '' + The id of the bootloader to store in efi nvram. + The default is to name it NixOS and append the path or efiSysMountPoint. + This is only used if <literal>boot.loader.efi.canTouchEfiVariables</literal> is true. + ''; + }; + devices = mkOption { default = [ ]; example = [ "/dev/sda" "/dev/sdb" ]; @@ -163,6 +181,15 @@ in ''; }; + storePath = mkOption { + default = "/nix/store"; + type = types.str; + description = '' + Path to the Nix store when looking for kernels at boot. + Only makes sense when copyKernels is false. + ''; + }; + extraPrepareConfig = mkOption { default = ""; type = types.lines; @@ -242,6 +269,24 @@ in ''; }; + gfxmodeEfi = mkOption { + default = "auto"; + example = "1024x768"; + type = types.str; + description = '' + The gfxmode to pass to grub when loading a graphical boot interface under efi. + ''; + }; + + gfxmodeBios = mkOption { + default = "1024x768"; + example = "auto"; + type = types.str; + description = '' + The gfxmode to pass to grub when loading a graphical boot interface under bios. + ''; + }; + configurationLimit = mkOption { default = 100; example = 120; diff --git a/nixos/modules/system/boot/loader/grub/install-grub.pl b/nixos/modules/system/boot/loader/grub/install-grub.pl index fcf5871203d5..cad9013bf5ad 100644 --- a/nixos/modules/system/boot/loader/grub/install-grub.pl +++ b/nixos/modules/system/boot/loader/grub/install-grub.pl @@ -55,8 +55,12 @@ my $fsIdentifier = get("fsIdentifier"); my $grubEfi = get("grubEfi"); my $grubTargetEfi = get("grubTargetEfi"); my $bootPath = get("bootPath"); +my $storePath = get("storePath"); my $canTouchEfiVariables = get("canTouchEfiVariables"); my $efiSysMountPoint = get("efiSysMountPoint"); +my $gfxmodeEfi = get("gfxmodeEfi"); +my $gfxmodeBios = get("gfxmodeBios"); +my $bootloaderId = get("bootloaderId"); $ENV{'PATH'} = get("path"); die "unsupported GRUB version\n" if $grubVersion != 1 && $grubVersion != 2; @@ -210,7 +214,7 @@ sub GrubFs { my $grubBoot = GrubFs($bootPath); my $grubStore; if ($copyKernels == 0) { - $grubStore = GrubFs("/nix/store"); + $grubStore = GrubFs($storePath); } # Generate the header. @@ -255,14 +259,22 @@ else { fi # Setup the graphics stack for bios and efi systems - insmod vbe - insmod efi_gop - insmod efi_uga + if [ \"\${grub_platform}\" = \"efi\" ]; then + insmod efi_gop + insmod efi_uga + else + insmod vbe + fi insmod font if loadfont " . $grubBoot->path . "/grub/fonts/unicode.pf2; then insmod gfxterm - set gfxmode=auto - set gfxpayload=keep + if [ \"\${grub_platform}\" = \"efi\" ]; then + set gfxmode=$gfxmodeEfi + set gfxpayload=keep + else + set gfxmode=$gfxmodeBios + set gfxpayload=text + fi terminal_output gfxterm fi "; @@ -490,6 +502,14 @@ my $efiDiffer = ($efiTarget eq \$prevGrubState->efi); my $efiMountPointDiffer = ($efiSysMountPoint eq \$prevGrubState->efiMountPoint); my $requireNewInstall = $devicesDiffer || $versionDiffer || $efiDiffer || $efiMountPointDiffer || (($ENV{'NIXOS_INSTALL_GRUB'} // "") eq "1"); +# install a symlink so that grub can detect the boot drive when set +# as the root directory +if (! -l "$bootPath/boot") { + if (-e "$bootPath/boot") { + unlink "$bootPath/boot"; + } + symlink ".", "$bootPath/boot"; +} # install non-EFI GRUB if (($requireNewInstall != 0) && ($efiTarget eq "no" || $efiTarget eq "both")) { @@ -497,10 +517,10 @@ if (($requireNewInstall != 0) && ($efiTarget eq "no" || $efiTarget eq "both")) { next if $dev eq "nodev"; print STDERR "installing the GRUB $grubVersion boot loader on $dev...\n"; if ($grubTarget eq "") { - system("$grub/sbin/grub-install", "--recheck", "--boot-directory=$bootPath", Cwd::abs_path($dev)) == 0 + system("$grub/sbin/grub-install", "--recheck", "--root-directory=$bootPath", Cwd::abs_path($dev)) == 0 or die "$0: installation of GRUB on $dev failed\n"; } else { - system("$grub/sbin/grub-install", "--recheck", "--boot-directory=$bootPath", "--target=$grubTarget", Cwd::abs_path($dev)) == 0 + system("$grub/sbin/grub-install", "--recheck", "--root-directory=$bootPath", "--target=$grubTarget", Cwd::abs_path($dev)) == 0 or die "$0: installation of GRUB on $dev failed\n"; } } @@ -511,7 +531,7 @@ if (($requireNewInstall != 0) && ($efiTarget eq "no" || $efiTarget eq "both")) { if (($requireNewInstall != 0) && ($efiTarget eq "only" || $efiTarget eq "both")) { print STDERR "installing the GRUB $grubVersion EFI boot loader into $efiSysMountPoint...\n"; if ($canTouchEfiVariables eq "true") { - system("$grubEfi/sbin/grub-install", "--recheck", "--target=$grubTargetEfi", "--boot-directory=$bootPath", "--efi-directory=$efiSysMountPoint") == 0 + system("$grubEfi/sbin/grub-install", "--recheck", "--target=$grubTargetEfi", "--boot-directory=$bootPath", "--efi-directory=$efiSysMountPoint", "--bootloader-id=$bootloaderId") == 0 or die "$0: installation of GRUB EFI into $efiSysMountPoint failed\n"; } else { system("$grubEfi/sbin/grub-install", "--recheck", "--target=$grubTargetEfi", "--boot-directory=$bootPath", "--efi-directory=$efiSysMountPoint", "--no-nvram") == 0 diff --git a/nixos/modules/system/boot/luksroot.nix b/nixos/modules/system/boot/luksroot.nix index 03070bef483a..3799e5d7ddb6 100644 --- a/nixos/modules/system/boot/luksroot.nix +++ b/nixos/modules/system/boot/luksroot.nix @@ -211,7 +211,7 @@ in }; boot.initrd.luks.cryptoModules = mkOption { - type = types.listOf types.string; + type = types.listOf types.str; default = [ "aes" "aes_generic" "blowfish" "twofish" "serpent" "cbc" "xts" "lrw" "sha1" "sha256" "sha512" diff --git a/nixos/modules/system/boot/modprobe.nix b/nixos/modules/system/boot/modprobe.nix index a1feaad6132d..a3b616ff3eff 100644 --- a/nixos/modules/system/boot/modprobe.nix +++ b/nixos/modules/system/boot/modprobe.nix @@ -101,7 +101,7 @@ with lib; echo ${config.system.sbin.modprobe}/sbin/modprobe > /proc/sys/kernel/modprobe ''; - environment.variables.MODULE_DIR = "/run/current-system/kernel-modules/lib/modules"; + environment.sessionVariables.MODULE_DIR = "/run/current-system/kernel-modules/lib/modules"; }; diff --git a/nixos/modules/system/boot/stage-1-init.sh b/nixos/modules/system/boot/stage-1-init.sh index 5af644279e5f..e8d276920a83 100644 --- a/nixos/modules/system/boot/stage-1-init.sh +++ b/nixos/modules/system/boot/stage-1-init.sh @@ -317,7 +317,7 @@ mountFS() { # Try to find and mount the root device. -mkdir /mnt-root +mkdir -p $targetRoot exec 3< @fsInfo@ diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix index 8b58eccdcec7..893861a2eed2 100644 --- a/nixos/modules/system/boot/stage-1.nix +++ b/nixos/modules/system/boot/stage-1.nix @@ -358,7 +358,7 @@ in boot.initrd.supportedFilesystems = mkOption { default = [ ]; example = [ "btrfs" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = "Names of supported filesystem types in the initial ramdisk."; }; diff --git a/nixos/modules/system/boot/systemd-unit-options.nix b/nixos/modules/system/boot/systemd-unit-options.nix index 57831a5e6ef3..a7a334dec285 100644 --- a/nixos/modules/system/boot/systemd-unit-options.nix +++ b/nixos/modules/system/boot/systemd-unit-options.nix @@ -42,13 +42,13 @@ in rec { requiredBy = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; description = "Units that require (i.e. depend on and need to go down with) this unit."; }; wantedBy = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; description = "Units that want (i.e. depend on) this unit."; }; diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index 1fde720bba0d..2ad12c51b218 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -491,7 +491,7 @@ in services.journald.rateLimitBurst = mkOption { default = 100; - type = types.uniq types.int; + type = types.int; description = '' Configures the rate limiting burst limit (number of messages per interval) that is applied to all messages generated on the system. diff --git a/nixos/modules/tasks/filesystems.nix b/nixos/modules/tasks/filesystems.nix index ce8d6079faac..ce21d9fe7621 100644 --- a/nixos/modules/tasks/filesystems.nix +++ b/nixos/modules/tasks/filesystems.nix @@ -121,7 +121,7 @@ in boot.supportedFilesystems = mkOption { default = [ ]; example = [ "btrfs" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = "Names of supported filesystem types."; }; diff --git a/nixos/modules/tasks/kbd.nix b/nixos/modules/tasks/kbd.nix index 8d26998021d3..69f004888f55 100644 --- a/nixos/modules/tasks/kbd.nix +++ b/nixos/modules/tasks/kbd.nix @@ -22,7 +22,7 @@ in # FIXME: still needed? boot.extraTTYs = mkOption { default = []; - type = types.listOf types.string; + type = types.listOf types.str; example = ["tty8" "tty9"]; description = '' Tty (virtual console) devices, in addition to the consoles on diff --git a/nixos/modules/tasks/network-interfaces.nix b/nixos/modules/tasks/network-interfaces.nix index 71a721abba21..6361ed2cc431 100644 --- a/nixos/modules/tasks/network-interfaces.nix +++ b/nixos/modules/tasks/network-interfaces.nix @@ -392,7 +392,7 @@ in interfaces = mkOption { example = [ "eth0" "eth1" ]; - type = types.listOf types.string; + type = types.listOf types.str; description = "The physical network interfaces connected by the bridge."; }; diff --git a/nixos/modules/virtualisation/amazon-init.nix b/nixos/modules/virtualisation/amazon-init.nix new file mode 100644 index 000000000000..6058a7019e84 --- /dev/null +++ b/nixos/modules/virtualisation/amazon-init.nix @@ -0,0 +1,52 @@ +{ config, pkgs, modulesPath, ... }: + +# This attempts to pull a nix expression from this EC2 instance's user-data. + +let + bootScript = pkgs.writeScript "bootscript.sh" '' + #!${pkgs.stdenv.shell} -eux + + echo "attempting to fetch configuration from user-data..." + + export PATH=${config.nix.package}/bin:${pkgs.wget}/bin:${pkgs.systemd}/bin:${pkgs.gnugrep}/bin:${pkgs.gnused}/bin:${config.system.build.nixos-rebuild}/bin:$PATH + export NIX_PATH=/nix/var/nix/profiles/per-user/root/channels/nixos:nixos-config=/etc/nixos/configuration.nix:/nix/var/nix/profiles/per-user/root/channels + + userData="$(mktemp)" + wget -q --wait=1 --tries=0 --retry-connrefused -O - http://169.254.169.254/2011-01-01/user-data > "$userData" + + if [[ $? -eq 0 ]]; then + echo "user-data fetched" + # If the user-data looks like it could be a nix expression, + # copy it over. Also, look for a magic three-hash comment and set + # that as the channel. + if sed '/^\(#\|SSH_HOST_.*\)/d' < "$userData" | grep -q '\S'; then + channels="$(grep '^###' "$userData" | sed 's|###\s*||')" + printf "%s" "$channels" | while read channel; do + echo "writing channel: $channel" + done + + if [[ -n "$channels" ]]; then + printf "%s" "$channels" > /root/.nix-channels + nix-channel --update + fi + + echo "setting configuration" + cp "$userData" /etc/nixos/configuration.nix + else + echo "user-data does not appear to be a nix expression; ignoring" + fi + else + echo "failed to fetch user-data" + fi + + type -f nixos-rebuild + + nixos-rebuild switch + ''; +in { + imports = [ "${modulesPath}/virtualisation/amazon-image.nix" ]; + ec2.metadata = true; + boot.postBootCommands = '' + ${bootScript} & + ''; +} diff --git a/nixos/modules/virtualisation/qemu-vm.nix b/nixos/modules/virtualisation/qemu-vm.nix index 8c7e840910de..15b0da3bab74 100644 --- a/nixos/modules/virtualisation/qemu-vm.nix +++ b/nixos/modules/virtualisation/qemu-vm.nix @@ -61,8 +61,8 @@ let idx=2 extraDisks="" ${flip concatMapStrings cfg.emptyDiskImages (size: '' - ${pkgs.qemu_kvm}/bin/qemu-img create -f raw "empty$idx" "${toString size}M" - extraDisks="$extraDisks -drive index=$idx,file=$(pwd)/empty$idx,if=virtio,werror=report" + ${pkgs.qemu_kvm}/bin/qemu-img create -f qcow2 "empty$idx.qcow2" "${toString size}M" + extraDisks="$extraDisks -drive index=$idx,file=$(pwd)/empty$idx.qcow2,if=${cfg.qemu.diskInterface},werror=report" idx=$((idx + 1)) '')} @@ -76,14 +76,14 @@ let -virtfs local,path=$TMPDIR/xchg,security_model=none,mount_tag=xchg \ -virtfs local,path=''${SHARED_DIR:-$TMPDIR/xchg},security_model=none,mount_tag=shared \ ${if cfg.useBootLoader then '' - -drive index=0,id=drive1,file=$NIX_DISK_IMAGE,if=virtio,cache=writeback,werror=report \ + -drive index=0,id=drive1,file=$NIX_DISK_IMAGE,if=${cfg.qemu.diskInterface},cache=writeback,werror=report \ -drive index=1,id=drive2,file=$TMPDIR/disk.img,media=disk \ ${if cfg.useEFIBoot then '' -pflash $TMPDIR/bios.bin \ '' else '' ''} '' else '' - -drive file=$NIX_DISK_IMAGE,if=virtio,cache=writeback,werror=report \ + -drive index=0,id=drive1,file=$NIX_DISK_IMAGE,if=${cfg.qemu.diskInterface},cache=writeback,werror=report \ -kernel ${config.system.build.toplevel}/kernel \ -initrd ${config.system.build.toplevel}/initrd \ -append "$(cat ${config.system.build.toplevel}/kernel-params) init=${config.system.build.toplevel}/init regInfo=${regInfo} ${kernelConsole} $QEMU_KERNEL_PARAMS" \ @@ -165,7 +165,7 @@ let ${config.system.build.toplevel}/bin/switch-to-configuration boot umount /boot - '' + '' # */ ); in @@ -204,17 +204,25 @@ in ''; }; + virtualisation.bootDevice = + mkOption { + type = types.str; + example = "/dev/vda"; + description = + '' + The disk to be used for the root filesystem. + ''; + }; + virtualisation.emptyDiskImages = mkOption { default = []; type = types.listOf types.int; description = '' - Additional disk images to provide to the VM, the value is a list of - sizes in megabytes the empty disk should be. - - These disks are writeable by the VM and will be thrown away - afterwards. + Additional disk images to provide to the VM. The value is + a list of size in megabytes of each disk. These disks are + writeable by the VM. ''; }; @@ -310,6 +318,17 @@ in to keep the default runtime behaviour. ''; }; + + diskInterface = + mkOption { + default = "virtio"; + example = "scsi"; + type = types.str; + description = '' + The interface used for the virtual hard disks + (<literal>virtio</literal> or <literal>scsi</literal>). + ''; + }; }; virtualisation.useBootLoader = @@ -341,7 +360,7 @@ in config = { - boot.loader.grub.device = mkVMOverride "/dev/vda"; + boot.loader.grub.device = mkVMOverride cfg.bootDevice; boot.initrd.extraUtilsCommands = '' @@ -353,9 +372,9 @@ in '' # If the disk image appears to be empty, run mke2fs to # initialise. - FSTYPE=$(blkid -o value -s TYPE /dev/vda || true) + FSTYPE=$(blkid -o value -s TYPE ${cfg.bootDevice} || true) if test -z "$FSTYPE"; then - mke2fs -t ext4 /dev/vda + mke2fs -t ext4 ${cfg.bootDevice} fi ''; @@ -385,6 +404,12 @@ in fi ''; + boot.initrd.availableKernelModules = + optional (cfg.qemu.diskInterface == "scsi") "sym53c8xx"; + + virtualisation.bootDevice = + mkDefault (if cfg.qemu.diskInterface == "scsi" then "/dev/sda" else "/dev/vda"); + virtualisation.pathsInNixDB = [ config.system.build.toplevel ]; virtualisation.qemu.options = [ "-vga std" "-usbdevice tablet" ]; @@ -396,7 +421,7 @@ in # attribute should be disregarded for the purpose of building a VM # test image (since those filesystems don't exist in the VM). fileSystems = mkVMOverride ( - { "/".device = "/dev/vda"; + { "/".device = cfg.bootDevice; ${if cfg.writableStore then "/nix/.ro-store" else "/nix/store"} = { device = "store"; fsType = "9p"; diff --git a/nixos/modules/virtualisation/xen-dom0.nix b/nixos/modules/virtualisation/xen-dom0.nix index ea9f61aad6a6..7b5d714622c8 100644 --- a/nixos/modules/virtualisation/xen-dom0.nix +++ b/nixos/modules/virtualisation/xen-dom0.nix @@ -6,7 +6,6 @@ with lib; let cfg = config.virtualisation.xen; - xen = pkgs.xen; in { @@ -88,9 +87,9 @@ in message = "Xen currently does not support EFI boot"; } ]; - virtualisation.xen.stored = mkDefault "${xen}/bin/oxenstored"; + virtualisation.xen.stored = mkDefault "${pkgs.xen}/bin/oxenstored"; - environment.systemPackages = [ xen ]; + environment.systemPackages = [ pkgs.xen ]; # Make sure Domain 0 gets the required configuration #boot.kernelPackages = pkgs.boot.kernelPackages.override { features={xen_dom0=true;}; }; @@ -122,7 +121,7 @@ in system.extraSystemBuilderCmds = '' - ln -s ${xen}/boot/xen.gz $out/xen.gz + ln -s ${pkgs.xen}/boot/xen.gz $out/xen.gz echo "${toString cfg.bootParams}" > $out/xen-params ''; @@ -158,13 +157,16 @@ in environment.etc = - [ { source = "${xen}/etc/xen/xl.conf"; + [ { source = "${pkgs.xen}/etc/xen/xl.conf"; target = "xen/xl.conf"; } + { source = "${pkgs.xen}/etc/xen/scripts"; + target = "xen/scripts"; + } ]; # Xen provides udev rules. - services.udev.packages = [ xen ]; + services.udev.packages = [ pkgs.xen ]; services.udev.path = [ pkgs.bridge-utils pkgs.iproute ]; @@ -260,16 +262,13 @@ in wantedBy = [ "multi-user.target" ]; before = [ "xen-domains.service" ]; serviceConfig.RemainAfterExit = "yes"; - serviceConfig.ExecStart = '' - ${pkgs.bridge-utils}/bin/brctl addbr ${cfg.bridge} - ${pkgs.inetutils}/bin/ifconfig ${cfg.bridge} up - ''; - serviceConfig.ExecStop = '' - ${pkgs.inetutils}/bin/ifconfig ${cfg.bridge} down - ${pkgs.bridge-utils}/bin/brctl delbr ${cfg.bridge} - ''; + serviceConfig.ExecStart = "${pkgs.bridge-utils}/bin/brctl addbr ${cfg.bridge}"; + postStart = "${pkgs.inetutils}/bin/ifconfig ${cfg.bridge} up"; + serviceConfig.ExecStop = "${pkgs.inetutils}/bin/ifconfig ${cfg.bridge} down"; + postStop = "${pkgs.bridge-utils}/bin/brctl delbr ${cfg.bridge}"; }; + systemd.services.xen-domains = { description = "Xen domains - automatically starts, saves and restores Xen domains"; wantedBy = [ "multi-user.target" ]; diff --git a/nixos/release-combined.nix b/nixos/release-combined.nix index d501c2e7c535..191d5044341f 100644 --- a/nixos/release-combined.nix +++ b/nixos/release-combined.nix @@ -52,6 +52,7 @@ in rec { (all nixos.tests.firefox) (all nixos.tests.firewall) (all nixos.tests.gnome3) + (all nixos.tests.installer.grub1) (all nixos.tests.installer.lvm) (all nixos.tests.installer.luksroot) (all nixos.tests.installer.separateBoot) @@ -62,6 +63,7 @@ in rec { (all nixos.tests.installer.btrfsSimple) (all nixos.tests.installer.btrfsSubvols) (all nixos.tests.installer.btrfsSubvolDefault) + (all nixos.tests.bootBiosCdrom) (all nixos.tests.ipv6) (all nixos.tests.kde4) (all nixos.tests.lightdm) diff --git a/nixos/release.nix b/nixos/release.nix index 3559926eefad..a8b6d275f1d8 100644 --- a/nixos/release.nix +++ b/nixos/release.nix @@ -93,37 +93,7 @@ let in rec { - channel = - pkgs.releaseTools.makeSourceTarball { - name = "nixos-channel"; - - src = nixpkgs; - - officialRelease = false; # FIXME: fix this in makeSourceTarball - inherit version versionSuffix; - - buildInputs = [ pkgs.nixUnstable ]; - - expr = builtins.readFile lib/channel-expr.nix; - - distPhase = '' - rm -rf .git - echo -n $VERSION_SUFFIX > .version-suffix - echo -n ${nixpkgs.rev or nixpkgs.shortRev} > .git-revision - releaseName=nixos-$VERSION$VERSION_SUFFIX - mkdir -p $out/tarballs - mkdir ../$releaseName - cp -prd . ../$releaseName/nixpkgs - chmod -R u+w ../$releaseName - ln -s nixpkgs/nixos ../$releaseName/nixos - echo "$expr" > ../$releaseName/default.nix - NIX_STATE_DIR=$TMPDIR nix-env -f ../$releaseName/default.nix -qaP --meta --xml \* > /dev/null - cd .. - chmod -R u+w $releaseName - tar cfJ $out/tarballs/$releaseName.tar.xz $releaseName - ''; # */ - }; - + channel = import lib/make-channel.nix { inherit pkgs nixpkgs version versionSuffix; }; manual = buildFromConfig ({ pkgs, ... }: { }) (config: config.system.build.manual.manual); manualPDF = (buildFromConfig ({ pkgs, ... }: { }) (config: config.system.build.manual.manualPDF)).x86_64-linux; @@ -247,6 +217,8 @@ in rec { tests.docker = hydraJob (import tests/docker.nix { system = "x86_64-linux"; }); tests.dockerRegistry = hydraJob (import tests/docker-registry.nix { system = "x86_64-linux"; }); tests.etcd = hydraJob (import tests/etcd.nix { system = "x86_64-linux"; }); + tests.ec2-nixops = hydraJob (import tests/ec2.nix { system = "x86_64-linux"; }).boot-ec2-nixops; + tests.ec2-config = hydraJob (import tests/ec2.nix { system = "x86_64-linux"; }).boot-ec2-config; tests.firefox = callTest tests/firefox.nix {}; tests.firewall = callTest tests/firewall.nix {}; tests.fleet = hydraJob (import tests/fleet.nix { system = "x86_64-linux"; }); @@ -256,7 +228,6 @@ in rec { tests.installer.grub1 = forAllSystems (system: hydraJob (import tests/installer.nix { inherit system; }).grub1.test); tests.installer.lvm = forAllSystems (system: hydraJob (import tests/installer.nix { inherit system; }).lvm.test); tests.installer.luksroot = forAllSystems (system: hydraJob (import tests/installer.nix { inherit system; }).luksroot.test); - tests.installer.rebuildCD = forAllSystems (system: hydraJob (import tests/installer.nix { inherit system; }).rebuildCD.test); tests.installer.separateBoot = forAllSystems (system: hydraJob (import tests/installer.nix { inherit system; }).separateBoot.test); tests.installer.simple = forAllSystems (system: hydraJob (import tests/installer.nix { inherit system; }).simple.test); tests.installer.simpleLabels = forAllSystems (system: hydraJob (import tests/installer.nix { inherit system; }).simpleLabels.test); diff --git a/nixos/tests/ec2.nix b/nixos/tests/ec2.nix new file mode 100644 index 000000000000..1296ff4e8e30 --- /dev/null +++ b/nixos/tests/ec2.nix @@ -0,0 +1,119 @@ +{ system ? builtins.currentSystem }: + +with import ../lib/testing.nix { inherit system; }; +with import ../lib/qemu-flags.nix; +with pkgs.lib; + +let + image = + (import ../lib/eval-config.nix { + inherit system; + modules = [ + ../maintainers/scripts/ec2/amazon-hvm-config.nix + ../../nixos/modules/testing/test-instrumentation.nix + { boot.initrd.kernelModules = [ "virtio" "virtio_blk" "virtio_pci" "virtio_ring" ]; } + ]; + }).config.system.build.amazonImage; + + makeEc2Test = { name, userData, script, hostname ? "ec2-instance", sshPublicKey ? null }: + let + metaData = pkgs.stdenv.mkDerivation { + name = "metadata"; + buildCommand = '' + mkdir -p $out/2011-01-01 + ln -s ${pkgs.writeText "userData" userData} $out/2011-01-01/user-data + mkdir -p $out/1.0/meta-data + echo "${hostname}" > $out/1.0/meta-data/hostname + '' + optionalString (sshPublicKey != null) '' + mkdir -p $out/1.0/meta-data/public-keys/0 + ln -s ${pkgs.writeText "sshPublicKey" sshPublicKey} $out/1.0/meta-data/public-keys/0/openssh-key + ''; + }; + in makeTest { + name = "ec2-" + name; + nodes = {}; + testScript = + '' + use File::Temp qw/ tempfile /; + my ($fh, $filename) = tempfile(); + + `qemu-img create -f qcow2 -o backing_file=${image}/nixos.img $filename`; + + my $startCommand = "qemu-kvm -m 768 -net nic -net 'user,net=169.254.0.0/16,guestfwd=tcp:169.254.169.254:80-cmd:${pkgs.micro-httpd}/bin/micro_httpd ${metaData}'"; + $startCommand .= " -drive file=" . Cwd::abs_path($filename) . ",if=virtio,werror=report"; + $startCommand .= " \$QEMU_OPTS"; + + my $machine = createMachine({ startCommand => $startCommand }); + ${script} + ''; + }; + + snakeOilPrivateKey = [ + "-----BEGIN EC PRIVATE KEY-----" + "MHcCAQEEIHQf/khLvYrQ8IOika5yqtWvI0oquHlpRLTZiJy5dRJmoAoGCCqGSM49" + "AwEHoUQDQgAEKF0DYGbBwbj06tA3fd/+yP44cvmwmHBWXZCKbS+RQlAKvLXMWkpN" + "r1lwMyJZoSGgBHoUahoYjTh9/sJL7XLJtA==" + "-----END EC PRIVATE KEY-----" + ]; + + snakeOilPublicKey = pkgs.lib.concatStrings [ + "ecdsa-sha2-nistp256 AAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlzdHA" + "yNTYAAABBBChdA2BmwcG49OrQN33f/sj+OHL5sJhwVl2Qim0vkUJQCry1zFpKTa" + "9ZcDMiWaEhoAR6FGoaGI04ff7CS+1yybQ= snakeoil" + ]; +in { + boot-ec2-nixops = makeEc2Test { + name = "nixops-userdata"; + sshPublicKey = snakeOilPublicKey; # That's right folks! My user's key is also the host key! + + userData = '' + SSH_HOST_DSA_KEY_PUB:${snakeOilPublicKey} + SSH_HOST_DSA_KEY:${pkgs.lib.concatStringsSep "|" snakeOilPrivateKey} + ''; + script = '' + $machine->start; + $machine->waitForFile("/root/user-data"); + $machine->waitForUnit("sshd.service"); + + # We have no keys configured on the client side yet, so this should fail + $machine->fail("ssh -o BatchMode=yes localhost exit"); + + # Let's install our client private key + $machine->succeed("mkdir -p ~/.ssh"); + ${concatMapStrings (s: "$machine->succeed('echo ${s} >> ~/.ssh/id_ecdsa');") snakeOilPrivateKey} + $machine->succeed("chmod 600 ~/.ssh/id_ecdsa"); + + # We haven't configured the host key yet, so this should still fail + $machine->fail("ssh -o BatchMode=yes localhost exit"); + + # Add the host key; ssh should finally succeed + $machine->succeed("echo localhost,127.0.0.1 ${snakeOilPublicKey} > ~/.ssh/known_hosts"); + $machine->succeed("ssh -o BatchMode=yes localhost exit"); + + $machine->shutdown; + ''; + }; + + boot-ec2-config = makeEc2Test { + name = "config-userdata"; + sshPublicKey = snakeOilPublicKey; + + userData = '' + ### http://nixos.org/channels/nixos-unstable nixos + { + imports = [ + <nixpkgs/nixos/modules/virtualisation/amazon-image.nix> + <nixpkgs/nixos/modules/testing/test-instrumentation.nix> + ]; + environment.etc.testFile = { + text = "whoa"; + }; + } + ''; + script = '' + $machine->start; + $machine->waitForFile("/etc/testFile"); + $machine->succeed("cat /etc/testFile | grep -q 'whoa'"); + ''; + }; +} diff --git a/nixos/tests/installer.nix b/nixos/tests/installer.nix index fc65f392a1f7..32be1ea23b98 100644 --- a/nixos/tests/installer.nix +++ b/nixos/tests/installer.nix @@ -6,46 +6,9 @@ with pkgs.lib; let - # Build the ISO. This is the regular minimal installation CD but - # with test instrumentation. - iso = - (import ../lib/eval-config.nix { - inherit system; - modules = - [ ../modules/installer/cd-dvd/installation-cd-minimal.nix - ../modules/testing/test-instrumentation.nix - { key = "serial"; - boot.loader.grub.timeout = mkOverride 0 0; - - # The test cannot access the network, so any sources we - # need must be included in the ISO. - isoImage.storeContents = - [ pkgs.glibcLocales - pkgs.sudo - pkgs.docbook5 - pkgs.docbook5_xsl - pkgs.unionfs-fuse - - # Bootloader support - pkgs.grub - pkgs.grub2 - pkgs.grub2_efi - pkgs.gummiboot - pkgs.perlPackages.XMLLibXML - pkgs.perlPackages.ListCompare - ]; - - # Don't use https://cache.nixos.org since the fake - # cache.nixos.org doesn't do https. - nix.binaryCaches = [ http://cache.nixos.org/ ]; - } - ]; - }).config.system.build.isoImage; - - # The configuration to install. - makeConfig = { testChannel, grubVersion, grubDevice, grubIdentifier - , extraConfig, readOnly ? true, forceGrubReinstallCount ? 0 + makeConfig = { grubVersion, grubDevice, grubIdentifier + , extraConfig, forceGrubReinstallCount ? 0 }: pkgs.writeText "configuration.nix" '' { config, lib, pkgs, modulesPath, ... }: @@ -53,7 +16,6 @@ let { imports = [ ./hardware-configuration.nix <nixpkgs/nixos/modules/testing/test-instrumentation.nix> - <nixpkgs/nixos/modules/profiles/minimal.nix> ]; boot.loader.grub.version = ${toString grubVersion}; @@ -66,96 +28,39 @@ let boot.loader.grub.configurationLimit = 100 + ${toString forceGrubReinstallCount}; - ${optionalString (!readOnly) "nix.readOnlyStore = false;"} - - environment.systemPackages = [ ${optionalString testChannel "pkgs.rlwrap"} ]; + hardware.enableAllFirmware = lib.mkForce false; - nix.binaryCaches = [ http://cache.nixos.org/ ]; ${replaceChars ["\n"] ["\n "] extraConfig} } ''; - # Configuration of a web server that simulates the Nixpkgs channel - # distribution server. - webserver = - { config, lib, pkgs, ... }: - - { services.httpd.enable = true; - services.httpd.adminAddr = "foo@example.org"; - services.httpd.servedDirs = singleton - { urlPath = "/"; - dir = "/tmp/channel"; - }; - - virtualisation.writableStore = true; - virtualisation.pathsInNixDB = channelContents ++ [ pkgs.hello.src ]; - virtualisation.memorySize = 768; - - networking.firewall.allowedTCPPorts = [ 80 ]; - }; - channelContents = [ pkgs.rlwrap ]; - # The test script boots the CD, installs NixOS on an empty hard + # The test script boots a NixOS VM, installs NixOS on an empty hard # disk, and then reboot from the hard disk. It's parameterized with # a test script fragment `createPartitions', which must create # partitions and filesystems. - testScriptFun = { createPartitions, testChannel, grubVersion, grubDevice + testScriptFun = { createPartitions, grubVersion, grubDevice , grubIdentifier, preBootCommands, extraConfig }: let - # FIXME: OVMF doesn't boot from virtio http://www.mail-archive.com/edk2-devel@lists.sourceforge.net/msg01501.html iface = if grubVersion == 1 then "scsi" else "virtio"; qemuFlags = - (if iso.system == "x86_64-linux" then "-m 768 " else "-m 512 ") + - (optionalString (iso.system == "x86_64-linux") "-cpu kvm64 "); - hdFlags =''hda => "harddisk", hdaInterface => "${iface}", ''; + (if system == "x86_64-linux" then "-m 768 " else "-m 512 ") + + (optionalString (system == "x86_64-linux") "-cpu kvm64 "); + hdFlags = ''hda => "vm-state-machine/machine.qcow2", hdaInterface => "${iface}", ''; in '' - createDisk("harddisk", 8 * 1024); - - my $machine = createMachine({ ${hdFlags} - cdrom => glob("${iso}/iso/*.iso"), - qemuFlags => "${qemuFlags} " . '${optionalString testChannel (toString (qemuNICFlags 1 1 2))}' }); $machine->start; - ${optionalString testChannel '' - # Create a channel on the web server containing a few packages - # to simulate the Nixpkgs channel. - $webserver->start; - $webserver->waitForUnit("httpd"); - $webserver->succeed( - "nix-push --bzip2 --dest /tmp/channel --manifest --url-prefix http://nixos.org/channels/nixos-unstable " . - "${toString channelContents} >&2"); - $webserver->succeed("mkdir /tmp/channel/sha256"); - $webserver->succeed("cp ${pkgs.hello.src} /tmp/channel/sha256/${pkgs.hello.src.outputHash}"); - ''} - # Make sure that we get a login prompt etc. $machine->succeed("echo hello"); #$machine->waitForUnit('getty@tty2'); $machine->waitForUnit("rogue"); $machine->waitForUnit("nixos-manual"); - ${optionalString testChannel '' - $machine->waitForUnit("dhcpcd"); - - # Allow the machine to talk to the fake nixos.org. - $machine->succeed( - "rm /etc/hosts", - "echo 192.168.1.1 nixos.org cache.nixos.org tarballs.nixos.org > /etc/hosts", - "ifconfig eth1 up 192.168.1.2", - ); - - # Test nix-env. - $machine->fail("hello"); - $machine->succeed("nix-env -i hello"); - $machine->succeed("hello") =~ /Hello, world/ - or die "bad `hello' output"; - ''} - # Wait for hard disks to appear in /dev $machine->succeed("udevadm settle"); @@ -163,14 +68,12 @@ let ${createPartitions} # Create the NixOS configuration. - $machine->succeed( - "nixos-generate-config --root /mnt", - ); + $machine->succeed("nixos-generate-config --root /mnt"); $machine->succeed("cat /mnt/etc/nixos/hardware-configuration.nix >&2"); $machine->copyFileFromHost( - "${ makeConfig { inherit testChannel grubVersion grubDevice grubIdentifier extraConfig; } }", + "${ makeConfig { inherit grubVersion grubDevice grubIdentifier extraConfig; } }", "/mnt/etc/nixos/configuration.nix"); # Perform the installation. @@ -188,7 +91,7 @@ let # Now see if we can boot the installation. $machine = createMachine({ ${hdFlags} qemuFlags => "${qemuFlags}" }); - # For example to enter LUKS passphrase + # For example to enter LUKS passphrase. ${preBootCommands} # Did /boot get mounted? @@ -209,9 +112,9 @@ let $machine->succeed("type -tP ls | tee /dev/stderr") =~ /.nix-profile/ or die "nix-env failed"; - # We need to a writable nix-store on next boot + # We need to a writable nix-store on next boot. $machine->copyFileFromHost( - "${ makeConfig { inherit testChannel grubVersion grubDevice grubIdentifier extraConfig; readOnly = false; forceGrubReinstallCount = 1; } }", + "${ makeConfig { inherit grubVersion grubDevice grubIdentifier extraConfig; forceGrubReinstallCount = 1; } }", "/etc/nixos/configuration.nix"); # Check whether nixos-rebuild works. @@ -220,7 +123,7 @@ let # Test nixos-option. $machine->succeed("nixos-option boot.initrd.kernelModules | grep virtio_console"); $machine->succeed("nixos-option boot.initrd.kernelModules | grep 'List of modules'"); - $machine->succeed("nixos-option boot.initrd.kernelModules | grep qemu-guest.nix"); + $machine->succeed("nixos-option boot.initrd.kernelModules | grep qemu-guest.nix"); $machine->shutdown; @@ -229,7 +132,7 @@ let ${preBootCommands} $machine->waitForUnit("multi-user.target"); $machine->copyFileFromHost( - "${ makeConfig { inherit testChannel grubVersion grubDevice grubIdentifier extraConfig; readOnly = false; forceGrubReinstallCount = 2; } }", + "${ makeConfig { inherit grubVersion grubDevice grubIdentifier extraConfig; forceGrubReinstallCount = 2; } }", "/etc/nixos/configuration.nix"); $machine->succeed("nixos-rebuild boot >&2"); $machine->shutdown; @@ -245,16 +148,63 @@ let makeInstallerTest = name: { createPartitions, preBootCommands ? "", extraConfig ? "" - , testChannel ? false, grubVersion ? 2, grubDevice ? "/dev/vda" + , grubVersion ? 2, grubDevice ? "/dev/vda" , grubIdentifier ? "uuid", enableOCR ? false }: makeTest { - inherit iso; - name = "installer-" + name; - nodes = if testChannel then { inherit webserver; } else { }; inherit enableOCR; + name = "installer-" + name; + + nodes = { + + # The configuration of the machine used to run "nixos-install". It + # also has a web server that simulates cache.nixos.org. + machine = + { config, lib, pkgs, ... }: + + { imports = + [ ../modules/profiles/installation-device.nix + ../modules/profiles/base.nix + ]; + + virtualisation.diskSize = 8 * 1024; + virtualisation.memorySize = 768; + virtualisation.writableStore = true; + + # Use a small /dev/vdb as the root disk for the + # installer. This ensures the target disk (/dev/vda) is + # the same during and after installation. + virtualisation.emptyDiskImages = [ 512 ]; + virtualisation.bootDevice = + if grubVersion == 1 then "/dev/sdb" else "/dev/vdb"; + virtualisation.qemu.diskInterface = + if grubVersion == 1 then "scsi" else "virtio"; + + hardware.enableAllFirmware = mkForce false; + + # The test cannot access the network, so any packages we + # need must be included in the VM. + system.extraDependencies = + [ pkgs.sudo + pkgs.docbook5 + pkgs.docbook5_xsl + pkgs.unionfs-fuse + pkgs.ntp + pkgs.nixos-artwork + pkgs.gummiboot + pkgs.perlPackages.XMLLibXML + pkgs.perlPackages.ListCompare + ] + ++ optional (grubVersion == 1) pkgs.grub + ++ optionals (grubVersion == 2) [ pkgs.grub2 pkgs.grub2_efi ]; + + nix.binaryCaches = mkForce [ ]; + }; + + }; + testScript = testScriptFun { - inherit createPartitions preBootCommands testChannel grubVersion + inherit createPartitions preBootCommands grubVersion grubDevice grubIdentifier extraConfig; }; }; @@ -281,7 +231,6 @@ in { "mount LABEL=nixos /mnt", ); ''; - testChannel = true; }; # Same as the previous, but now with a separate /boot partition. @@ -413,40 +362,11 @@ in { "mkfs.ext3 -L nixos /dev/sda2", "mount LABEL=nixos /mnt", ); - ''; grubVersion = 1; grubDevice = "/dev/sda"; }; - # Rebuild the CD configuration with a little modification. - rebuildCD = makeTest - { inherit iso; - name = "rebuild-cd"; - nodes = { }; - testScript = - '' - my $machine = createMachine({ cdrom => glob("${iso}/iso/*.iso"), qemuFlags => '-m 768' }); - $machine->start; - - # Enable sshd service. - $machine->succeed( - "sed -i 's,^}\$,systemd.services.sshd.wantedBy = pkgs.lib.mkOverride 0 [\"multi-user.target\"]; },' /etc/nixos/configuration.nix" - ); - - $machine->succeed("cat /etc/nixos/configuration.nix >&2"); - - # Apply the new CD configuration. - $machine->succeed("nixos-rebuild test"); - - # Connect to it-self. - $machine->waitForUnit("sshd"); - $machine->waitForOpenPort(22); - - $machine->shutdown; - ''; - }; - # Test using labels to identify volumes in grub simpleLabels = makeInstallerTest "simpleLabels" { createPartitions = '' @@ -545,4 +465,5 @@ in { ); ''; }; + } diff --git a/pkgs/applications/audio/aacgain/default.nix b/pkgs/applications/audio/aacgain/default.nix new file mode 100644 index 000000000000..69cc798ec0f9 --- /dev/null +++ b/pkgs/applications/audio/aacgain/default.nix @@ -0,0 +1,46 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation { + name = "aacgain-1.9.0"; + src = fetchFromGitHub { + owner = "mulx"; + repo = "aacgain"; + rev = "7c29dccd878ade1301710959aeebe87a8f0828f5"; + sha256 = "07hl432vsscqg01b6wr99qmsj4gbx0i02x4k565432y6zpfmaxm0"; + }; + + configurePhase = '' + cd mp4v2 + ./configure + + cd ../faad2 + ./configure + + cd .. + ./configure + ''; + + buildPhase = '' + cd mp4v2 + make libmp4v2.la + + cd ../faad2 + make LDFLAGS=-static + + cd .. + make + ''; + + installPhase = '' + strip -s aacgain/aacgain + install -vD aacgain/aacgain "$out/bin/aacgain" + ''; + + meta = { + description = "ReplayGain for AAC files"; + homepage = https://github.com/mulx/aacgain; + license = stdenv.lib.licenses.gpl2; + platforms = stdenv.lib.platforms.linux; + maintainers = [ stdenv.lib.maintainers.robbinch ]; + }; +} diff --git a/pkgs/applications/audio/dfasma/default.nix b/pkgs/applications/audio/dfasma/default.nix new file mode 100644 index 000000000000..0dda6e3dabda --- /dev/null +++ b/pkgs/applications/audio/dfasma/default.nix @@ -0,0 +1,43 @@ +{ stdenv, fetchFromGitHub, fftw, libsndfile, qt5 }: + +let version = "1.0.1"; in +stdenv.mkDerivation { + name = "dfasma-${version}"; + + src = fetchFromGitHub { + sha256 = "16m6jnr49j525xxqiwmwni07rcdg92p0dcznd5bmzz34xsm0cbiz"; + rev = "v${version}"; + repo = "dfasma"; + owner = "gillesdegottex"; + }; + + meta = with stdenv.lib; { + inherit version; + description = "Analyse and compare audio files in time and frequency"; + longDescription = '' + DFasma is free open-source software to compare audio files by time and + frequency. The comparison is first visual, using wavforms and spectra. It + is also possible to listen to time-frequency segments in order to allow + perceptual comparison. It is basically dedicated to analysis. Even though + there are basic functionalities to align the signals in time and + amplitude, this software does not aim to be an audio editor. + ''; + homepage = http://gillesdegottex.github.io/dfasma/; + license = licenses.gpl3Plus; + platforms = with platforms; linux; + maintainers = with maintainers; [ nckx ]; + }; + + buildInputs = [ fftw libsndfile qt5.base qt5.multimedia ]; + + configurePhase = '' + qmake DESTDIR=$out/bin dfasma.pro + ''; + + enableParallelBuilding = true; + + postInstall = '' + install -Dm644 distrib/dfasma.desktop $out/share/applications/dfasma.desktop + install -Dm644 icons/dfasma.png $out/share/pixmaps/dfasma.png + ''; +} diff --git a/pkgs/applications/audio/fmit/default.nix b/pkgs/applications/audio/fmit/default.nix index ead15e9a9187..a8acfbffb051 100644 --- a/pkgs/applications/audio/fmit/default.nix +++ b/pkgs/applications/audio/fmit/default.nix @@ -1,26 +1,30 @@ -{ stdenv, fetchurl, alsaLib, cmake, fftw, freeglut, jack2, libXmu, qt4 }: +{ stdenv, fetchFromGitHub, alsaLib, cmake, fftw +, freeglut, jack2, libXmu, qt4 }: -stdenv.mkDerivation rec { - version = "0.99.5"; +let version = "1.0.0"; in +stdenv.mkDerivation { name = "fmit-${version}"; - src = fetchurl { - url = "http://download.gna.org/fmit/${name}-Source.tar.bz2"; - sha256 = "1rc84gi27jmq2smhk0y0p2xyypmsz878vi053iqns21k848g1491"; + src = fetchFromGitHub { + sha256 = "13y9csv34flz7065kg69h99hd7d9zskq12inmkf34l4qjyk7c185"; + rev = "v${version}"; + repo = "fmit"; + owner = "gillesdegottex"; }; - # Also update longDescription when adding/removing sound libraries - buildInputs = [ alsaLib cmake fftw freeglut jack2 libXmu qt4 ]; + buildInputs = [ alsaLib fftw freeglut jack2 libXmu qt4 ]; + nativeBuildInputs = [ cmake ]; enableParallelBuilding = true; meta = with stdenv.lib; { + inherit version; description = "Free Musical Instrument Tuner"; longDescription = '' - Software for tuning musical instruments. Uses Qt as GUI library and - ALSA or JACK as sound input library. + FMIT is a graphical utility for tuning your musical instruments, with + error and volume history and advanced features. ''; - homepage = http://home.gna.org/fmit/index.html; + homepage = http://gillesdegottex.github.io/fmit/; license = licenses.gpl3Plus; platforms = with platforms; linux; maintainers = with maintainers; [ nckx ]; diff --git a/pkgs/applications/audio/gmpc/default.nix b/pkgs/applications/audio/gmpc/default.nix index 7cc8aeda3677..4da235dd8a9c 100644 --- a/pkgs/applications/audio/gmpc/default.nix +++ b/pkgs/applications/audio/gmpc/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, libtool, intltool, pkgconfig, glib , gtk, curl, mpd_clientlib, libsoup, gob2, vala, libunique -, libSM, libICE, sqlite +, libSM, libICE, sqlite, hicolor_icon_theme }: stdenv.mkDerivation rec { @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { buildInputs = [ libtool intltool pkgconfig glib gtk curl mpd_clientlib libsoup - libunique libmpd gob2 vala libSM libICE sqlite + libunique libmpd gob2 vala libSM libICE sqlite hicolor_icon_theme ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/audio/groovebasin/default.nix b/pkgs/applications/audio/groovebasin/default.nix new file mode 100644 index 000000000000..5a5f8c30da23 --- /dev/null +++ b/pkgs/applications/audio/groovebasin/default.nix @@ -0,0 +1,65 @@ +{ stdenv, fetchFromGitHub, makeWrapper, callPackage, libgroove, python, utillinux }: + +with stdenv.lib; + +let + nodePackages = callPackage (import ../../../top-level/node-packages.nix) { + neededNatives = [ libgroove python utillinux ]; + self = nodePackages; + generated = ./package.nix; + }; + +in nodePackages.buildNodePackage rec { + version = "1.5.1"; + name = "groovebasin-${version}"; + + src = fetchFromGitHub { + owner = "andrewrk"; + repo = "groovebasin"; + rev = "${version}"; + sha256 = "1g7v0qhvgzpb050hf45pibp68qd67hnnry5npw58f4dvaxdd8yhd"; + }; + + deps = (filter (v: nixType v == "derivation") (attrValues nodePackages)); + + buildInputs = [ makeWrapper ]; + + postInstall = '' + mkdir -p "$out/lib/node_modules/groovebasin/public" + stylus -o "$out/lib/node_modules/groovebasin/public/" -c --include-css "$out/lib/node_modules/groovebasin/src/client/styles" + browserify-lite "$out/lib/node_modules/groovebasin/src/client/app.js" --outfile "$out/lib/node_modules/groovebasin/public/app.js" + wrapProgram "$out/bin/groovebasin" --set NODE_PATH "$out/lib/node_modules/groovebasin/node_modules/" + ''; + + passthru.names = ["groovebasin"]; + + meta = { + description = "Music player server with a web-based user interface"; + homepage = http://groovebasin.com/; + license = licenses.mit; + platforms = platforms.unix; + maintainers = [ maintainers.andrewrk ]; + longDescription = '' + Groove Basin runs on a server optionally connected to speakers. Guests can + control the music player by connecting with a laptop, tablet, or smart phone. + Further, users can stream their music libraries remotely. + + Groove Basin comes with a fast, responsive web interface that supports keyboard + shortcuts and drag drop. It also provides the ability to upload songs, + download songs, and import songs by URL, including YouTube URLs. + + Groove Basin supports Dynamic Mode which automatically queues random songs, + favoring songs that have not been queued recently. + + Groove Basin automatically performs ReplayGain scanning on every song using + the EBU R128 loudness standard, and automatically switches between track + and album mode. + + Groove Basin supports the MPD protocol, which means it is compatible with MPD + clients. There is also a more powerful Groove Basin protocol which you can + use if the MPD protocol does not meet your needs. + + Groove Basin supports Last.fm scrobbling. + ''; + }; +} diff --git a/pkgs/applications/audio/groovebasin/package.nix b/pkgs/applications/audio/groovebasin/package.nix new file mode 100644 index 000000000000..3f307cd32f05 --- /dev/null +++ b/pkgs/applications/audio/groovebasin/package.nix @@ -0,0 +1,4396 @@ +{ self, fetchurl, fetchgit ? null, lib }: + +{ + by-spec."CSSselect"."~0.4.0" = + self.by-version."CSSselect"."0.4.1"; + by-version."CSSselect"."0.4.1" = self.buildNodePackage { + name = "CSSselect-0.4.1"; + version = "0.4.1"; + bin = false; + src = fetchurl { + url = "http://registry.npmjs.org/CSSselect/-/CSSselect-0.4.1.tgz"; + name = "CSSselect-0.4.1.tgz"; + sha1 = "f8ab7e1f8418ce63cda6eb7bd778a85d7ec492b2"; + }; + deps = { + "CSSwhat-0.4.7" = self.by-version."CSSwhat"."0.4.7"; + "domutils-1.4.3" = self.by-version."domutils"."1.4.3"; + }; + optionalDependencies = { + }; + peerDependencies = []; + os = [ ]; + cpu = [ ]; + }; + by-spec."CSSwhat"."0.4" = + self.by-version."CSSwhat"."0.4.7"; + by-version."CSSwhat"."0.4.7" = self.buildNodePackage { + name = "CSSwhat-0.4.7"; + version = "0.4.7"; + bin = false; + src = fetchurl { + url = "http://registry.npmjs.org/CSSwhat/-/CSSwhat-0.4.7.tgz"; + name = "CSSwhat-0.4.7.tgz"; + sha1 = "867da0ff39f778613242c44cfea83f0aa4ebdf9b"; + }; + deps = { + }; + optionalDependencies = { + }; + peerDependencies = []; + os = [ ]; + cpu = [ ]; + }; + by-spec."abbrev"."1" = + self.by-version."abbrev"."1.0.7"; + by-version."abbrev"."1.0.7" = self.buildNodePackage { + name = "abbrev-1.0.7"; + version = "1.0.7"; + bin = false; + src = fetchurl { + url = "http://registry.npmjs.org/abbrev/-/abbrev-1.0.7.tgz"; + name = "abbrev-1.0.7.tgz"; + sha1 = "5b6035b2ee9d4fb5cf859f08a9be81b208491843"; + }; + deps = { + }; + optionalDependencies = { + }; + peerDependencies = []; + os = [ ]; + cpu = [ ]; + }; + by-spec."abstract-leveldown"."~2.2.1" = + self.by-version."abstract-leveldown"."2.2.2"; 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+ by-version."yauzl"."2.3.1" = self.buildNodePackage { + name = "yauzl-2.3.1"; + version = "2.3.1"; + bin = false; + src = fetchurl { + url = "http://registry.npmjs.org/yauzl/-/yauzl-2.3.1.tgz"; + name = "yauzl-2.3.1.tgz"; + sha1 = "6707fe2b6a4dac9445cc429bf04a11c7dedfa36a"; + }; + deps = { + "fd-slicer-1.0.1" = self.by-version."fd-slicer"."1.0.1"; + "pend-1.2.0" = self.by-version."pend"."1.2.0"; + }; + optionalDependencies = { + }; + peerDependencies = []; + os = [ ]; + cpu = [ ]; + }; + "yauzl" = self.by-version."yauzl"."2.3.1"; + by-spec."yawl"."~1.0.2" = + self.by-version."yawl"."1.0.2"; + by-version."yawl"."1.0.2" = self.buildNodePackage { + name = "yawl-1.0.2"; + version = "1.0.2"; + bin = false; + src = fetchurl { + url = "http://registry.npmjs.org/yawl/-/yawl-1.0.2.tgz"; + name = "yawl-1.0.2.tgz"; + sha1 = "df1301cb50e5bc74cc36d5c1ef9cfbd1f84b408e"; + }; + deps = { + "bl-0.9.4" = self.by-version."bl"."0.9.4"; + "pend-1.2.0" = self.by-version."pend"."1.2.0"; + }; + optionalDependencies = { + }; + peerDependencies = []; + os = [ ]; + cpu = [ ]; + }; + "yawl" = self.by-version."yawl"."1.0.2"; + by-spec."yazl"."~2.2.2" = + self.by-version."yazl"."2.2.2"; + by-version."yazl"."2.2.2" = self.buildNodePackage { + name = "yazl-2.2.2"; + version = "2.2.2"; + bin = false; + src = fetchurl { + url = "http://registry.npmjs.org/yazl/-/yazl-2.2.2.tgz"; + name = "yazl-2.2.2.tgz"; + sha1 = "60187f4ce6df314e7501c3c0e40bcf1b58fda183"; + }; + deps = { + "buffer-crc32-0.2.5" = self.by-version."buffer-crc32"."0.2.5"; + }; + optionalDependencies = { + }; + peerDependencies = []; + os = [ ]; + cpu = [ ]; + }; + "yazl" = self.by-version."yazl"."2.2.2"; + by-spec."ytdl-core".">=0.5.1" = + self.by-version."ytdl-core"."0.5.1"; + by-version."ytdl-core"."0.5.1" = self.buildNodePackage { + name = "ytdl-core-0.5.1"; + version = "0.5.1"; + bin = false; + src = fetchurl { + url = "http://registry.npmjs.org/ytdl-core/-/ytdl-core-0.5.1.tgz"; + name = "ytdl-core-0.5.1.tgz"; + sha1 = "3c48d696b019d7faae635a3f1e4eaa9131110f43"; + }; + deps = { + "cheerio-0.18.0" = self.by-version."cheerio"."0.18.0"; + "jstream-0.2.7" = self.by-version."jstream"."0.2.7"; + "request-2.57.0" = self.by-version."request"."2.57.0"; + "underscore-1.8.3" = self.by-version."underscore"."1.8.3"; + }; + optionalDependencies = { + }; + peerDependencies = []; + os = [ ]; + cpu = [ ]; + }; + "ytdl-core" = self.by-version."ytdl-core"."0.5.1"; +} + diff --git a/pkgs/applications/audio/ladspa-plugins/git.nix b/pkgs/applications/audio/ladspa-plugins/git.nix new file mode 100644 index 000000000000..e9ab932a88e4 --- /dev/null +++ b/pkgs/applications/audio/ladspa-plugins/git.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchgit, automake, autoreconfHook, fftw, gettext, ladspaH, libxml2, pkgconfig, perl, perlPackages }: + +stdenv.mkDerivation { + name = "swh-plugins-git-2015-03-04"; + + src = fetchgit { + url = https://github.com/swh/ladspa.git; + rev = "4b8437e8037cace3d5bf8ce6d1d1da0182aba686"; + sha256 = "7d9aa13a064903b330bd52e35c1f810f1c8a253ea5eb4e5a3a69a051af03150e"; + }; + + buildInputs = [ automake autoreconfHook fftw gettext ladspaH libxml2 pkgconfig perl perlPackages.XMLParser ]; + + patchPhase = '' + patchShebangs . + patchShebangs ./metadata/ + cp ${automake}/share/automake-*/mkinstalldirs . + ''; + + configurePhase = '' + autoreconf -i + ./configure --prefix=$out + ''; + + meta = with stdenv.lib; { + homepage = http://plugin.org.uk/; + description = "LADSPA format audio plugins"; + license = licenses.gpl2; + maintainers = [ maintainers.magnetophon ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/audio/mpc/default.nix b/pkgs/applications/audio/mpc/default.nix index 9224e21185bc..2f798fff7b9f 100644 --- a/pkgs/applications/audio/mpc/default.nix +++ b/pkgs/applications/audio/mpc/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, mpd_clientlib }: stdenv.mkDerivation rec { - version = "0.26"; + version = "0.27"; name = "mpc-${version}"; src = fetchurl { url = "http://www.musicpd.org/download/mpc/0/${name}.tar.xz"; - sha256 = "0hp2qv6w2v902dhrmck5hg32s1ai6xiv9n61a3n6prfcfdqmywr0"; + sha256 = "0r10wsqxsi07gns6mfnicvpci0sbwwj4qa9iyr1ysrgadl5bx8j5"; }; buildInputs = [ mpd_clientlib ]; diff --git a/pkgs/applications/audio/mpg123/default.nix b/pkgs/applications/audio/mpg123/default.nix index 3edb7ae6793b..eb1f8f4faa87 100644 --- a/pkgs/applications/audio/mpg123/default.nix +++ b/pkgs/applications/audio/mpg123/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchurl, alsaLib }: -stdenv.mkDerivation { - name = "mpg123-1.19.0"; +stdenv.mkDerivation rec { + name = "mpg123-1.22.2"; src = fetchurl { - url = mirror://sourceforge/mpg123/mpg123-1.19.0.tar.bz2; - sha256 = "06xhd68mj9yp0r6l771aq0d7xgnl402a3wm2mvhxmd3w3ph29446"; + url = "mirror://sourceforge/mpg123/${name}.tar.bz2"; + sha256 = "0i1phi6fdjas37y00h3j8rb0b8ngr9az6hy5ff5bl53ify3j87kd"; }; buildInputs = stdenv.lib.optional (!stdenv.isDarwin) alsaLib; @@ -16,8 +16,9 @@ stdenv.mkDerivation { }; meta = { - description = "Command-line MP3 player"; - homepage = http://mpg123.sourceforge.net/; - license = "LGPL"; + description = "Fast console MPEG Audio Player and decoder library"; + homepage = http://mpg123.org; + license = stdenv.lib.licenses.lgpl21; + maintainers = [ stdenv.lib.maintainers.ftrvxmtrx ]; }; } diff --git a/pkgs/applications/audio/setbfree/default.nix b/pkgs/applications/audio/setbfree/default.nix index 5119c384cf6a..5a5d500a0e7b 100644 --- a/pkgs/applications/audio/setbfree/default.nix +++ b/pkgs/applications/audio/setbfree/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { name = "setbfree-${version}"; - version = "0.7.5"; + version = "0.8.0"; src = fetchurl { url = "https://github.com/pantherb/setBfree/archive/v${version}.tar.gz"; - sha256 = "1chlmgwricc6l4kyg35vc9v8f1n8psr28iihn4a9q2prj1ihqcbc"; + sha256 = "1lfylai4gyk512dknj16w2aq9ka8hvqca46nmq5b4rfjmi6dkxf6"; }; patchPhase = '' diff --git a/pkgs/applications/audio/sonic-visualiser/default.nix b/pkgs/applications/audio/sonic-visualiser/default.nix index 9cd1a3d03458..70162b9d1858 100644 --- a/pkgs/applications/audio/sonic-visualiser/default.nix +++ b/pkgs/applications/audio/sonic-visualiser/default.nix @@ -3,7 +3,7 @@ { stdenv, fetchurl, alsaLib, bzip2, fftw, jack2, libX11, liblo , libmad, libogg, librdf, librdf_raptor, librdf_rasqal, libsamplerate , libsndfile, pkgconfig, libpulseaudio, qt5, redland -, rubberband, serd, sord, vampSDK +, rubberband, serd, sord, vampSDK, fftwFloat }: stdenv.mkDerivation rec { @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { }; buildInputs = - [ libsndfile qt5.base fftw /* should be fftw3f ??*/ bzip2 librdf rubberband + [ libsndfile qt5.base fftw fftwFloat bzip2 librdf rubberband libsamplerate vampSDK alsaLib librdf_raptor librdf_rasqal redland serd sord diff --git a/pkgs/applications/audio/wavegain/default.nix b/pkgs/applications/audio/wavegain/default.nix index caf579d87654..5f56fb7297f4 100644 --- a/pkgs/applications/audio/wavegain/default.nix +++ b/pkgs/applications/audio/wavegain/default.nix @@ -1,10 +1,12 @@ -{ stdenv, fetchgit }: +{ stdenv, fetchFromGitHub }: stdenv.mkDerivation { name = "wavegain-1.3.1"; - src = fetchgit { - url = "https://github.com/MestreLion/wavegain.git"; - sha256 = "1h886xijc9d7h4p6qx12c6kgwmp6s1bdycnyylkayfncczzlbi24"; + src = fetchFromGitHub { + owner = "MestreLion"; + repo = "wavegain"; + rev = "c928eaf97aeec5732625491b64c882e08e314fee"; + sha256 = "0wghqnsbypmr4xcrhb568bfjdnxzzp8qgnws3jslzmzf34dpk5ls"; }; installPhase = '' diff --git a/pkgs/applications/display-managers/lightdm-gtk-greeter/default.nix b/pkgs/applications/display-managers/lightdm-gtk-greeter/default.nix index 2ae6b2aeb263..ea80957afb02 100644 --- a/pkgs/applications/display-managers/lightdm-gtk-greeter/default.nix +++ b/pkgs/applications/display-managers/lightdm-gtk-greeter/default.nix @@ -8,14 +8,14 @@ let ver_branch = "2.0"; - version = "2.0.0"; + version = "2.0.1"; in stdenv.mkDerivation rec { name = "lightdm-gtk-greeter-${version}"; src = fetchurl { url = "${meta.homepage}/${ver_branch}/${version}/+download/${name}.tar.gz"; - sha256 = "1134q8qd7gr34jkivqxckdnwbpa8pl7dhjpdi9fci0pcs4hh22jc"; + sha256 = "031iv7zrpv27zsvahvfyrm75zdrh7591db56q89k8cjiiy600r1j"; }; buildInputs = [ pkgconfig lightdm intltool makeWrapper ] diff --git a/pkgs/applications/editors/emacs-modes/monky/default.nix b/pkgs/applications/editors/emacs-modes/monky/default.nix new file mode 100644 index 000000000000..8e35a4e2b571 --- /dev/null +++ b/pkgs/applications/editors/emacs-modes/monky/default.nix @@ -0,0 +1,19 @@ +{ stdenv, fetchurl, emacs, unzip }: + +stdenv.mkDerivation { + name = "emacs-monky-20150404"; + + src = fetchurl { + url = "https://github.com/ananthakumaran/monky/archive/48c0200910739b6521f26f6423b2bfb8c38b4482.zip"; + sha256 = "0yp3pzddx7yki9n3qrriqa5p442qyrdivvlc4xbl024vzjyzddrj"; + }; + + buildInputs = [ emacs unzip ]; + + buildPhase = "emacs -L . --batch -f batch-byte-compile *.el"; + + installPhase = '' + install -d $out/share/emacs/site-lisp + install *.el *.elc $out/share/emacs/site-lisp + ''; +} diff --git a/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix b/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix index 75861b0a9884..ed3ac0e3da05 100644 --- a/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix +++ b/pkgs/applications/editors/emacs-modes/scala-mode/v2.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://github.com/hvesalai/scala-mode2/archive/c154f1623f4696d26e1c88d19170e67bf6825837.zip"; - sha256 = "0fyxdpwz55n4c87v4ijqlbv6w1rybg5qrgsc40f6bs6sd747scy5"; + sha256 = "0im2ajb1iagjldh52j8wz4yby68rs3h7shrdf1pqy5ds7s4fa8cc"; }; buildInputs = [ unzip emacs ]; diff --git a/pkgs/applications/editors/neovim/default.nix b/pkgs/applications/editors/neovim/default.nix index f19c1b65e13a..28d455e06b26 100644 --- a/pkgs/applications/editors/neovim/default.nix +++ b/pkgs/applications/editors/neovim/default.nix @@ -1,20 +1,22 @@ -{ stdenv, fetchFromGitHub, cmake, gettext, glib, libmsgpack -, libtermkey, libtool, libuv, lpeg, lua, luajit, luaMessagePack -, luabitop, ncurses, perl, pkgconfig, unibilium -, withJemalloc ? true, jemalloc }: - -let version = "2015-05-26"; in -stdenv.mkDerivation rec { - name = "neovim-${version}"; - - src = fetchFromGitHub { - sha256 = "0sszpqlq0yp6r62zgcjcmnllc058wzzh9ccvgb2jh9k19ksszyhc"; - rev = "5a9ad68b258f33ebd7fa0a5da47b308f50f1e5e7"; - repo = "neovim"; - owner = "neovim"; - }; +{ stdenv, fetchFromGitHub, cmake, gettext, glib, libmsgpack, libtermkey +, libtool, libuv, lpeg, lua, luajit, luaMessagePack, luabitop, ncurses, perl +, pkgconfig, unibilium, makeWrapper, vimUtils + +, withPython ? true, pythonPackages, extraPythonPackages ? [] +, withPython3 ? true, python3Packages, extraPython3Packages ? [] +, withJemalloc ? true, jemalloc + +, vimAlias ? false +, configure ? null +}: + +with stdenv.lib; - # FIXME: this is NOT the libvterm already in nixpkgs, but some NIH silliness: +let + + version = "2015-06-09"; + + # Note: this is NOT the libvterm already in nixpkgs, but some NIH silliness: neovimLibvterm = let version = "2015-02-23"; in stdenv.mkDerivation rec { name = "neovim-libvterm-${version}"; @@ -25,13 +27,15 @@ stdenv.mkDerivation rec { owner = "neovim"; }; - buildInputs = [ libtool perl ]; + buildInputs = [ perl ]; + nativeBuildInputs = [ libtool ]; - makeFlags = "PREFIX=$(out)"; + makeFlags = [ "PREFIX=$(out)" ] + ++ stdenv.lib.optional stdenv.isDarwin "LIBTOOL=${libtool}/bin/libtool"; enableParallelBuilding = true; - meta = with stdenv.lib; { + meta = { description = "VT220/xterm/ECMA-48 terminal emulator library"; homepage = http://www.leonerd.org.uk/code/libvterm/; license = licenses.mit; @@ -40,49 +44,108 @@ stdenv.mkDerivation rec { }; }; - enableParallelBuilding = true; - - buildInputs = [ - cmake - glib - libtermkey - libuv - luajit - lua - lpeg - luaMessagePack - luabitop - libmsgpack - ncurses - neovimLibvterm - pkgconfig - unibilium - ] ++ stdenv.lib.optional withJemalloc jemalloc; - nativeBuildInputs = [ - gettext - ]; - - LUA_CPATH="${lpeg}/lib/lua/${lua.luaversion}/?.so;${luabitop}/lib/lua/5.2/?.so"; - LUA_PATH="${luaMessagePack}/share/lua/5.1/?.lua"; - - meta = with stdenv.lib; { - description = "Vim text editor fork focused on extensibility and agility"; - longDescription = '' - Neovim is a project that seeks to aggressively refactor Vim in order to: - - Simplify maintenance and encourage contributions - - Split the work between multiple developers - - Enable the implementation of new/modern user interfaces without any - modifications to the core source - - Improve extensibility with a new plugin architecture + pythonEnv = pythonPackages.python.buildEnv.override { + extraLibs = [ pythonPackages.neovim ] ++ extraPythonPackages; + ignoreCollisions = true; + }; + + python3Env = python3Packages.python.buildEnv.override { + extraLibs = [ python3Packages.neovim ] ++ extraPython3Packages; + ignoreCollisions = true; + }; + + neovim = stdenv.mkDerivation rec { + name = "neovim-${version}"; + + src = fetchFromGitHub { + sha256 = "1lycql0lwi7ynrsaln4kxybwvxb9fvganiq3ba4pnpcfgl155k1j"; + rev = "6270d431aaeed71e7a8782411f36409ab8e0ee35"; + repo = "neovim"; + owner = "neovim"; + }; + + enableParallelBuilding = true; + + buildInputs = [ + glib + libtermkey + libuv + luajit + lua + lpeg + luaMessagePack + luabitop + libmsgpack + ncurses + neovimLibvterm + unibilium + ] ++ optional withJemalloc jemalloc; + + nativeBuildInputs = [ + cmake + gettext + makeWrapper + pkgconfig + ]; + + LUA_CPATH="${lpeg}/lib/lua/${lua.luaversion}/?.so;${luabitop}/lib/lua/5.2/?.so"; + LUA_PATH="${luaMessagePack}/share/lua/5.1/?.lua"; + + preConfigure = stdenv.lib.optionalString stdenv.isDarwin '' + export DYLD_LIBRARY_PATH=${jemalloc}/lib + ''; + + postInstall = stdenv.lib.optionalString stdenv.isDarwin '' + echo patching $out/bin/nvim + install_name_tool -change libjemalloc.1.dylib \ + ${jemalloc}/lib/libjemalloc.1.dylib \ + $out/bin/nvim + '' + optionalString withPython '' + ln -s ${pythonEnv}/bin/python $out/bin/nvim-python + '' + optionalString withPython3 '' + ln -s ${python3Env}/bin/python $out/bin/nvim-python3 + '' + optionalString (withPython || withPython3) '' + wrapProgram $out/bin/nvim --add-flags "${ + (optionalString withPython + ''--cmd \"let g:python_host_prog='$out/bin/nvim-python'\" '') + + (optionalString withPython3 + ''--cmd \"let g:python3_host_prog='$out/bin/nvim-python3'\" '') + }" ''; - homepage = http://www.neovim.io; - # "Contributions committed before b17d96 by authors who did not sign the - # Contributor License Agreement (CLA) remain under the Vim license. - # Contributions committed after b17d96 are licensed under Apache 2.0 unless - # those contributions were copied from Vim (identified in the commit logs - # by the vim-patch token). See LICENSE for details." - license = with licenses; [ asl20 vim ]; - maintainers = with maintainers; [ manveru nckx ]; - platforms = platforms.unix; + + meta = { + description = "Vim text editor fork focused on extensibility and agility"; + longDescription = '' + Neovim is a project that seeks to aggressively refactor Vim in order to: + - Simplify maintenance and encourage contributions + - Split the work between multiple developers + - Enable the implementation of new/modern user interfaces without any + modifications to the core source + - Improve extensibility with a new plugin architecture + ''; + homepage = http://www.neovim.io; + # "Contributions committed before b17d96 by authors who did not sign the + # Contributor License Agreement (CLA) remain under the Vim license. + # Contributions committed after b17d96 are licensed under Apache 2.0 unless + # those contributions were copied from Vim (identified in the commit logs + # by the vim-patch token). See LICENSE for details." + license = with licenses; [ asl20 vim ]; + maintainers = with maintainers; [ manveru nckx garbas ]; + platforms = platforms.unix; + }; }; + +in if (vimAlias == false && configure == null) then neovim else stdenv.mkDerivation rec { + name = "neovim-${version}-configured"; + nativeBuildInputs = [ makeWrapper ]; + buildCommand = '' + mkdir -p $out/bin + for item in ${neovim}/bin/*; do + ln -s $item $out/bin/ + done + '' + optionalString vimAlias '' + ln -s $out/bin/nvim $out/bin/vim + '' + optionalString (configure != null) '' + wrapProgram $out/bin/nvim --add-flags "-u ${vimUtils.vimrcFile configure}" + ''; } diff --git a/pkgs/applications/graphics/apitrace/default.nix b/pkgs/applications/graphics/apitrace/default.nix index 348ba5c3c2c7..8e546652f852 100644 --- a/pkgs/applications/graphics/apitrace/default.nix +++ b/pkgs/applications/graphics/apitrace/default.nix @@ -11,7 +11,8 @@ stdenv.mkDerivation { owner = "apitrace"; }; - buildInputs = [ cmake python libX11 qt4 ]; + buildInputs = [ python libX11 qt4 ]; + nativeBuildInputs = [ cmake ]; buildPhase = '' cmake diff --git a/pkgs/applications/graphics/darktable/default.nix b/pkgs/applications/graphics/darktable/default.nix index 3398fed6595d..b89d59217ac8 100644 --- a/pkgs/applications/graphics/darktable/default.nix +++ b/pkgs/applications/graphics/darktable/default.nix @@ -9,12 +9,12 @@ assert stdenv ? glibc; stdenv.mkDerivation rec { - version = "1.6.6"; + version = "1.6.7"; name = "darktable-${version}"; src = fetchurl { url = "https://github.com/darktable-org/darktable/releases/download/release-${version}/darktable-${version}.tar.xz"; - sha256 = "1991zm0ly2j69vq9jsijfrjw0vnchh3il7m4ylsblzk73614nppq"; + sha256 = "162c9kdj71az0ipaw4kiqcxhig0hcbmzw936d390r8zhkns76l57"; }; buildInputs = diff --git a/pkgs/applications/graphics/photoqt/default.nix b/pkgs/applications/graphics/photoqt/default.nix index 9e2c3a18a637..2d41cfe51891 100644 --- a/pkgs/applications/graphics/photoqt/default.nix +++ b/pkgs/applications/graphics/photoqt/default.nix @@ -1,19 +1,17 @@ { stdenv, fetchurl, cmake, qt5, exiv2, graphicsmagick }: let - version = "1.1.0.1"; + version = "1.2"; in stdenv.mkDerivation rec { name = "photoqt-${version}"; src = fetchurl { url = "http://photoqt.org/pkgs/photoqt-${version}.tar.gz"; - sha256 = "1y59ys1dgjppahs7v7kxwva7ik23s0x7j2f6glv6sn23l9cfq9rp"; + sha256 = "1dnnj2h3j517hcbjxlzk035fis44wdmqq7dvhwpmq1rcr0v32aaa"; }; buildInputs = [ cmake qt5.base qt5.tools exiv2 graphicsmagick ]; - patches = [ ./graphicsmagick-path.patch ]; - preConfigure = '' export MAGICK_LOCATION="${graphicsmagick}/include/GraphicsMagick" ''; diff --git a/pkgs/applications/graphics/photoqt/graphicsmagick-path.patch b/pkgs/applications/graphics/photoqt/graphicsmagick-path.patch deleted file mode 100644 index da9b70e31ed5..000000000000 --- a/pkgs/applications/graphics/photoqt/graphicsmagick-path.patch +++ /dev/null @@ -1,46 +0,0 @@ ---- a/CMake/FindMagick.cmake 2014-10-13 19:24:30.000000000 +0200 -+++ b/CMake/FindMagick.cmake 2014-12-27 18:54:19.611759021 +0100 -@@ -19,28 +19,11 @@ - SET(MAGICK++_FOUND "NO" ) - - FIND_PATH( MAGICK_INCLUDE_DIR magick/magick.h -- "$ENV{MAGICK_LOCATION}/magick" -- "$ENV{MAGICK_LOCATION}/include/magick" -- "$ENV{MAGICK_HOME}/include/magick" -- /usr/include/magick -- /usr/include/ -- /usr/include/GraphicsMagick -- /opt/local/include/GraphicsMagick/magick -- /opt/local/include/GraphicsMagick -+ "$ENV{MAGICK_LOCATION}" - ) - - FIND_PATH( MAGICK++_INCLUDE_DIR Magick++.h -- "$ENV{MAGICK++_LOCATION}/Magick++" -- "$ENV{MAGICK++_LOCATION}/include/" -- "$ENV{MAGICK_LOCATION}/Magick++" -- "$ENV{MAGICK_LOCATION}/include/Magick++" -- "$ENV{MAGICK_LOCATION}/include/" -- "$ENV{MAGICK_HOME}/include/" -- /usr/include/Magick++ -- /usr/include/GraphicsMagick -- /usr/include/ -- /opt/local/include/GraphicsMagick/Magick++ -- /opt/local/include/GraphicsMagick -+ "$ENV{MAGICK_LOCATION}" - ) - - FIND_LIBRARY( Magick GraphicsMagick -@@ -55,12 +38,7 @@ - - FIND_LIBRARY( Magick++ GraphicsMagick++ - PATHS -- "$ENV{MAGICK++_LOCATION}/.libs" -- "$ENV{MAGICK_LOCATION}/.libs" -- "$ENV{MAGICK++_LOCATION}/lib" - "$ENV{MAGICK_LOCATION}/lib" -- "$ENV{MAGICK_HOME}/lib" -- /opt/local/lib - DOC "GraphicsMagick Magick++ library" - ) - diff --git a/pkgs/applications/graphics/simple-scan/default.nix b/pkgs/applications/graphics/simple-scan/default.nix index ad825eceec2b..b96688333a22 100644 --- a/pkgs/applications/graphics/simple-scan/default.nix +++ b/pkgs/applications/graphics/simple-scan/default.nix @@ -26,8 +26,9 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ cairo colord glib gtk3 intltool itstool libxml2 makeWrapper - pkgconfig saneBackends systemd vala ]; + buildInputs = [ cairo colord glib gtk3 intltool itstool libxml2 + saneBackends systemd vala ]; + nativeBuildInputs = [ makeWrapper pkgconfig ]; enableParallelBuilding = true; diff --git a/pkgs/applications/misc/dfilemanager/default.nix b/pkgs/applications/misc/dfilemanager/default.nix new file mode 100644 index 000000000000..40bb2e8fe568 --- /dev/null +++ b/pkgs/applications/misc/dfilemanager/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchgit, cmake, qt5, file, kde5}: + +let + version = "git-2015-06-10"; +in +stdenv.mkDerivation rec { + name = "dfilemanager-${version}"; + src = fetchgit { + url = "git://git.code.sf.net/p/dfilemanager/code"; + rev = "806a28aa8fed30941a2fd6784c7c9c240bca30e3"; + sha256 = "1k15qzjmqg9ffv4cl809b071dpyckf8jspkhfhpbmfd9wasr0m7i"; + }; + + buildInputs = [ cmake qt5.base qt5.tools qt5.x11extras file kde5.solid]; + + cmakeFlags = "-DQT5BUILD=true"; + + meta = { + homepage = "http://dfilemanager.sourceforge.net/"; + description = "File manager written in Qt/C++, it does use one library from kdelibs, the solid lib for easy device handling"; + #license = stdenv.lib.licenses; # license not specified + platforms = stdenv.lib.platforms.unix; + maintainers = [ stdenv.lib.maintainers.eduarrrd ]; + }; +} diff --git a/pkgs/applications/misc/electrum/default.nix b/pkgs/applications/misc/electrum/default.nix index 0f7b85e055b7..b910b1796a3e 100644 --- a/pkgs/applications/misc/electrum/default.nix +++ b/pkgs/applications/misc/electrum/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { name = "electrum-${version}"; - version = "2.0.4"; + version = "2.3.2"; src = fetchurl { url = "https://download.electrum.org/Electrum-${version}.tar.gz"; - sha256 = "0q9vrrzy2iypfg2zvs3glzvqyq65dnwn1ijljvfqfwrkpvpp0zxp"; + sha256 = "0idqm77d5rbwpw14wqg4ysvbjyqjw7zlqfcdxniy74i2qwz163bi"; }; propagatedBuildInputs = with pythonPackages; [ diff --git a/pkgs/applications/misc/hstr/default.nix b/pkgs/applications/misc/hstr/default.nix index f4d4af0e12df..bf2fd97f26ee 100644 --- a/pkgs/applications/misc/hstr/default.nix +++ b/pkgs/applications/misc/hstr/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, readline, ncurses }: let - version = "1.16"; + version = "1.17"; in stdenv.mkDerivation rec { @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://github.com/dvorka/hstr/releases/download/${version}/hh-${version}-src.tgz"; - sha256 = "1hl3fn6kravx5gsdsr0l824vnkj5aiz0dybhd3ak932v95b5knyg"; + sha256 = "0vjc4d8cl3sfbv9lywdpd2slffqyp3cpj52yp29g9lr2n3nfksk8"; }; buildInputs = [ readline ncurses ]; diff --git a/pkgs/applications/misc/khal/default.nix b/pkgs/applications/misc/khal/default.nix index 85720f644831..2652af9bed92 100644 --- a/pkgs/applications/misc/khal/default.nix +++ b/pkgs/applications/misc/khal/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, pkgs, pythonPackages }: pythonPackages.buildPythonPackage rec { - version = "0.4.0"; + version = "0.5.0"; name = "khal-${version}"; src = fetchurl { url = "https://github.com/geier/khal/archive/v${version}.tar.gz"; - sha256 = "0d32miq55cly4q3raxkw3xpq4d5y3hvzaqvy066nv35bdlpafxi1"; + sha256 = "1rjs5s8ky4n628rs6l5ggaj2abb4kq2avvxmimjjgxz3zh9xlz6s"; }; propagatedBuildInputs = with pythonPackages; [ @@ -22,13 +22,13 @@ pythonPackages.buildPythonPackage rec { requests_toolbelt tzlocal urwid + python.modules.sqlite3 ]; - meta = { + meta = with stdenv.lib; { homepage = http://lostpackets.de/khal/; description = "CLI calendar application"; - license = stdenv.lib.licenses.mit; - maintainers = with stdenv.lib.maintainers; [ matthiasbeyer ]; + license = licenses.mit; + maintainers = with maintainers; [ matthiasbeyer jgeerds ]; }; } - diff --git a/pkgs/applications/misc/qpdfview/default.nix b/pkgs/applications/misc/qpdfview/default.nix index 1cf6d76b8920..574b73f56726 100644 --- a/pkgs/applications/misc/qpdfview/default.nix +++ b/pkgs/applications/misc/qpdfview/default.nix @@ -5,10 +5,10 @@ let s = # Generated upstream information rec { baseName="qpdfview"; - version = "0.4.14"; + version = "0.4.15"; name="${baseName}-${version}"; url="https://launchpad.net/qpdfview/trunk/${version}/+download/qpdfview-${version}.tar.gz"; - sha256 = "15d88xzqvrcp9szmz8d1lj65yrdx90j6fp78gia5c8kra2z8bik9"; + sha256 = "0wgj02zpbyq4m2ix8rljiz312l2xk81gpy030vy424icq4xsip52"; }; buildInputs = [ qt4 poppler_qt4 pkgconfig djvulibre libspectre cups file ghostscript diff --git a/pkgs/applications/misc/rofi/default.nix b/pkgs/applications/misc/rofi/default.nix index 1bbe026cfebd..55f63d99ce29 100644 --- a/pkgs/applications/misc/rofi/default.nix +++ b/pkgs/applications/misc/rofi/default.nix @@ -1,17 +1,15 @@ -{ stdenv, fetchFromGitHub, autoconf, automake, pkgconfig +{ stdenv, fetchurl, autoconf, automake, pkgconfig , libX11, libXinerama, libXft, pango , i3Support ? false, i3 }: stdenv.mkDerivation rec { name = "rofi-${version}"; - version = "0.15.2"; + version = "0.15.5"; - src = fetchFromGitHub { - repo = "rofi"; - owner = "DaveDavenport"; - rev = "${version}"; - sha256 = "0b8k5g2fpqrz1yac09kmfk4caxcc107qq4yhncnl159xdxw66vz8"; + src = fetchurl { + url = "https://github.com/DaveDavenport/rofi/archive/${version}.tar.gz"; + sha256 = "16dffwxqxcx5krb6v1m6gh0r6d0a4hwl0jq4fdyblcv9xid5hxf5"; }; buildInputs = [ autoconf automake pkgconfig libX11 libXinerama libXft pango @@ -25,5 +23,6 @@ stdenv.mkDerivation rec { description = "Window switcher, run dialog and dmenu replacement"; homepage = https://davedavenport.github.io/rofi; license = stdenv.lib.licenses.mit; + maintainers = [ stdenv.lib.maintainers.mbakke ]; }; } diff --git a/pkgs/applications/misc/rofi/pass.nix b/pkgs/applications/misc/rofi/pass.nix index 8a7382ae737a..ccde370c2925 100644 --- a/pkgs/applications/misc/rofi/pass.nix +++ b/pkgs/applications/misc/rofi/pass.nix @@ -1,7 +1,7 @@ { stdenv, fetchgit, rofi, wmctrl, xprop, xdotool}: stdenv.mkDerivation rec { - name = "rofi-${version}"; + name = "rofi-pass-${version}"; version = "2015-06-08"; src = fetchgit { diff --git a/pkgs/applications/misc/scim/default.nix b/pkgs/applications/misc/scim/default.nix index ef1bb0bed1dc..98594157211c 100644 --- a/pkgs/applications/misc/scim/default.nix +++ b/pkgs/applications/misc/scim/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, yacc, ncurses, libxml2 }: let - version = "0.1.8"; + version = "0.1.9"; in stdenv.mkDerivation rec { @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://github.com/andmarti1424/scim/archive/v${version}.tar.gz"; - sha256 = "0qjixb1hzbdrypbmzwb2iaw5wp57kn7fmm1zpjp4gzjyanrhazs2"; + sha256 = "00rjz344acw0bxv78x1w9jz8snl9lb9qhr9z22phxinidnd3vaaz"; }; buildInputs = [ yacc ncurses libxml2 ]; diff --git a/pkgs/applications/misc/taskwarrior/default.nix b/pkgs/applications/misc/taskwarrior/default.nix index fa8b11adbf85..20f7bfec646d 100644 --- a/pkgs/applications/misc/taskwarrior/default.nix +++ b/pkgs/applications/misc/taskwarrior/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "taskwarrior-${version}"; - version = "2.4.0"; + version = "2.4.4"; enableParallelBuilding = true; src = fetchurl { url = "http://www.taskwarrior.org/download/task-${version}.tar.gz"; - sha256 = "17hiv7zld06zb5xmyp96bw9xl6vp178fhffs660fxxpxn3srb9bg"; + sha256 = "7ff406414e0be480f91981831507ac255297aab33d8246f98dbfd2b1b2df8e3b"; }; nativeBuildInputs = [ cmake libuuid gnutls ]; diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix index 1f6c272aceb2..d3a0c86daf4c 100644 --- a/pkgs/applications/networking/browsers/chromium/common.nix +++ b/pkgs/applications/networking/browsers/chromium/common.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, ninja, which # default dependencies -, bzip2, flac, speex, icu, libopus +, bzip2, flac, speex, libopus , libevent, expat, libjpeg, snappy , libpng, libxml2, libxslt, libcap , xdg_utils, yasm, minizip, libwebp @@ -84,7 +84,7 @@ let }; defaultDependencies = [ - bzip2 flac speex icu opusWithCustomModes + bzip2 flac speex opusWithCustomModes libevent expat libjpeg snappy libpng libxml2 libxslt libcap xdg_utils yasm minizip libwebp @@ -113,7 +113,7 @@ let glib gtk dbus_glib libXScrnSaver libXcursor libXtst mesa pciutils protobuf speechd libXdamage - pythonPackages.gyp_svn1977 pythonPackages.ply pythonPackages.jinja2 + pythonPackages.gyp pythonPackages.ply pythonPackages.jinja2 ] ++ optional gnomeKeyringSupport libgnome_keyring3 ++ optionals gnomeSupport [ gnome.GConf libgcrypt ] ++ optional enableSELinux libselinux @@ -124,15 +124,10 @@ let # be fixed, then try again to unbundle everything into separate # derivations. prePatch = '' - cp -dsr --no-preserve=mode "${source.main}"/* . - cp -dsr --no-preserve=mode "${source.sandbox}" sandbox + cp -dr --no-preserve=mode "${source.main}"/* . + cp -dr --no-preserve=mode "${source.sandbox}" sandbox cp -dr "${source.bundled}" third_party chmod -R u+w third_party - - # Hardcode source tree root in all gyp files - find -iname '*.gyp*' \( -type f -o -type l \) \ - -exec sed -i -e 's|<(DEPTH)|'"$(pwd)"'|g' {} + \ - -exec chmod u+w {} + ''; postPatch = optionalString (versionOlder version "42.0.0.0") '' @@ -200,7 +195,7 @@ let # This is to ensure expansion of $out. libExecPath="${libExecPath}" python build/linux/unbundle/replace_gyp_files.py ${gypFlags} - python build/gyp_chromium -f ninja --depth "$(pwd)" ${gypFlags} + python build/gyp_chromium -f ninja --depth . ${gypFlags} ''; buildPhase = let diff --git a/pkgs/applications/networking/browsers/chromium/source/default.nix b/pkgs/applications/networking/browsers/chromium/source/default.nix index 54430bb5be9f..a3a466314845 100644 --- a/pkgs/applications/networking/browsers/chromium/source/default.nix +++ b/pkgs/applications/networking/browsers/chromium/source/default.nix @@ -18,7 +18,7 @@ let "s,^/,," ]); - pre42 = versionOlder version "42.0.0.0"; + pre44 = versionOlder version "44.0.0.0"; in stdenv.mkDerivation { name = "chromium-source-${version}"; @@ -47,10 +47,10 @@ in stdenv.mkDerivation { done ''; - patches = if pre42 then [ - ./sandbox_userns_36.patch ./nix_plugin_paths.patch - ] else [ + patches = if pre44 then [ ./nix_plugin_paths_42.patch + ] else [ + ./nix_plugin_paths_44.patch ]; patchPhase = let @@ -73,11 +73,10 @@ in stdenv.mkDerivation { -e 's|/bin/echo|echo|' \ -e "/python_arch/s/: *'[^']*'/: '""'/" \ "$out/build/common.gypi" "$main/chrome/chrome_tests.gypi" - '' + optionalString useOpenSSL '' - cat $opensslPatches | patch -p1 -d "$bundled/openssl/openssl" - '' + optionalString (!pre42) '' sed -i -e '/LOG.*no_suid_error/d' \ "$main/content/browser/browser_main_loop.cc" + '' + optionalString useOpenSSL '' + cat $opensslPatches | patch -p1 -d "$bundled/openssl/openssl" ''; preferLocalBuild = true; diff --git a/pkgs/applications/networking/browsers/chromium/source/nix_plugin_paths.patch b/pkgs/applications/networking/browsers/chromium/source/nix_plugin_paths_44.patch index 0220d0429413..326da7f420a5 100644 --- a/pkgs/applications/networking/browsers/chromium/source/nix_plugin_paths.patch +++ b/pkgs/applications/networking/browsers/chromium/source/nix_plugin_paths_44.patch @@ -55,21 +55,6 @@ index 8a205a6..d5c24e1 100644 return false; cur = cur.Append(kInternalFlashPluginFileName); break; -@@ -295,12 +288,12 @@ bool PathProvider(int key, base::FilePath* result) { - cur = cur.Append(chrome::kPepperFlashPluginFilename); - break; - case chrome::FILE_PDF_PLUGIN: -- if (!GetInternalPluginsDirectory(&cur)) -+ if (!GetInternalPluginsDirectory(&cur, "PDF")) - return false; - cur = cur.Append(kInternalPDFPluginFileName); - break; - case chrome::FILE_EFFECTS_PLUGIN: -- if (!GetInternalPluginsDirectory(&cur)) -+ if (!GetInternalPluginsDirectory(&cur, "FILE_EFFECTS")) - return false; - cur = cur.Append(kEffectsPluginFileName); - break; @@ -308,7 +301,7 @@ bool PathProvider(int key, base::FilePath* result) { // We currently need a path here to look up whether the plugin is disabled // and what its permissions are. diff --git a/pkgs/applications/networking/browsers/chromium/source/sources.nix b/pkgs/applications/networking/browsers/chromium/source/sources.nix index e1144a44afb2..3adbbab8392b 100644 --- a/pkgs/applications/networking/browsers/chromium/source/sources.nix +++ b/pkgs/applications/networking/browsers/chromium/source/sources.nix @@ -1,21 +1,21 @@ # This file is autogenerated from update.sh in the parent directory. { dev = { - version = "43.0.2327.5"; - sha256 = "0k9jpzm1n7d3zv6f77vz33jcvmnbxnl6plabvlrf8w83kbzhi76n"; - sha256bin32 = "1dm4xp0x02kqj82giw45qd2z12wf22h2bs0d3hnlz050innxgcb6"; - sha256bin64 = "1b13g44y704llsnw68840zmaahj1hwzram50v8fqmff44w1b0bxb"; + version = "45.0.2421.0"; + sha256 = "1qc80y0mhwnvxrvpc3csskgb536wq34c0fgk19h1qb4xc62lxhsk"; + sha256bin32 = "1xqhyrlmh00md6i1q4wr0xihqbvcpshzscnjclrn53dlw5zs2s89"; + sha256bin64 = "0akdhwwdfcbqfh65a82zigbhsi8sbhhw6904cjprb3bmv4l3c598"; }; beta = { - version = "42.0.2311.39"; - sha256 = "0qiyg8bg9f1daf8v2jlrv54lis7156h44ak42jdx96xanvj2rvj0"; - sha256bin32 = "0v4dr2a3n51dais2mg0dml0rmqfmalfj0zgp20a4kkarbpih1x0v"; - sha256bin64 = "19638ik9qgfmxpzdry0qwkwpzvhlbs2h2nn1kwsjja5j49817ksx"; + version = "44.0.2403.39"; + sha256 = "15c4adg0r9ym3pxya7vv4d148gv2pdwaaymxvvw511fjwffdv71n"; + sha256bin32 = "1gaypkah10y31gb5f7vnyv0v73z5zjznmsp6vh2m4hfajx7s55jn"; + sha256bin64 = "1j1ma6asl3ibjv3apyw24vhyi1qy64f586w8jizqzp4h962gj95c"; }; stable = { - version = "41.0.2272.89"; - sha256 = "1saxcyqp8pz496qwdgl4dqxll6l9icbljm56w1rrkxgwrrvl4iwk"; - sha256bin32 = "19srg0isp1k4fwixwjxm1j88bnqx9sb349n992i038c3h8raa1v4"; - sha256bin64 = "1fb8ffgbsjsij7bd1qawa03z9pybasfig1cmdzwybmlwg2fdlvfv"; + version = "43.0.2357.124"; + sha256 = "09m8bb5f17mx6cd3h5irslw07h2s0drda35v17vcr7qfhk8jdh92"; + sha256bin32 = "15n2fla1ixrqzi0in0vyl8n5wkv20fpd96lff65rwr9diylz287p"; + sha256bin64 = "0x6igpcf29zmwqgphvy9nm527k9g7na2cvgc5nimw4fs5dakzzjr"; }; } diff --git a/pkgs/applications/networking/browsers/chromium/source/update.nix b/pkgs/applications/networking/browsers/chromium/source/update.nix index 27af85de5465..e639cdb087bc 100644 --- a/pkgs/applications/networking/browsers/chromium/source/update.nix +++ b/pkgs/applications/networking/browsers/chromium/source/update.nix @@ -9,7 +9,7 @@ let then import ./sources.nix else null; - bucketURL = "http://commondatastorage.googleapis.com/" + bucketURL = "https://commondatastorage.googleapis.com/" + "chromium-browser-official"; debURL = "https://dl.google.com/linux/chrome/deb/pool/main/g"; diff --git a/pkgs/applications/networking/browsers/firefox/default.nix b/pkgs/applications/networking/browsers/firefox/default.nix index 03b96acc712f..f10df2dc9960 100644 --- a/pkgs/applications/networking/browsers/firefox/default.nix +++ b/pkgs/applications/networking/browsers/firefox/default.nix @@ -1,9 +1,10 @@ -{ lib, stdenv, fetchurl, pkgconfig, gtk, pango, perl, python, zip, libIDL +{ lib, stdenv, fetchurl, pkgconfig, gtk, gtk3, pango, perl, python, zip, libIDL , libjpeg, zlib, dbus, dbus_glib, bzip2, xlibs , freetype, fontconfig, file, alsaLib, nspr, nss, libnotify , yasm, mesa, sqlite, unzip, makeWrapper, pysqlite , hunspell, libevent, libstartup_notification, libvpx , cairo, gstreamer, gst_plugins_base, icu +, enableGTK3 ? false , debugBuild ? false , # If you want the resulting program to call itself "Firefox" instead # of "Shiretoko" or whatever, enable this option. However, those @@ -34,7 +35,8 @@ stdenv.mkDerivation rec { xlibs.libXext xlibs.xextproto sqlite unzip makeWrapper hunspell libevent libstartup_notification libvpx cairo gstreamer gst_plugins_base icu - ]; + ] + ++ lib.optional enableGTK3 gtk3; configureFlags = [ "--enable-application=browser" @@ -64,6 +66,7 @@ stdenv.mkDerivation rec { "--disable-updater" "--disable-pulseaudio" ] + ++ lib.optional enableGTK3 "--enable-default-toolkit=cairo-gtk3" ++ (if debugBuild then [ "--enable-debug" "--enable-profiling"] else [ "--disable-debug" "--enable-release" "--enable-optimize${lib.optionalString (stdenv.system == "i686-linux") "=-O1"}" @@ -92,6 +95,11 @@ stdenv.mkDerivation rec { # Remove SDK cruft. FIXME: move to a separate output? rm -rf $out/share/idl $out/include $out/lib/firefox-devel-* + '' + lib.optionalString enableGTK3 + '' + wrapProgram "$out/bin/firefox" \ + --prefix XDG_DATA_DIRS : "$GSETTINGS_SCHEMAS_PATH:" \ + --suffix XDG_DATA_DIRS : "$XDG_ICON_DIRS" ''; meta = { diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix index 79d95571f2f9..e736c90d6bb9 100644 --- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix +++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix @@ -36,7 +36,7 @@ let # -> http://get.adobe.com/flashplayer/ - version = "11.2.202.460"; + version = "11.2.202.466"; src = if stdenv.system == "x86_64-linux" then @@ -47,7 +47,7 @@ let else rec { inherit version; url = "http://fpdownload.macromedia.com/get/flashplayer/pdc/${version}/install_flash_player_11_linux.x86_64.tar.gz"; - sha256 = "152hhxismgvz6hkh5m8z5x1drpwflymd2zk3v96nszpkb2xxirnr"; + sha256 = "1clwfhq57gck638sj7i19gxar1z5ks2zfdw1p9iln515a57ik158"; } else if stdenv.system == "i686-linux" then if debug then @@ -60,7 +60,7 @@ let else rec { inherit version; url = "http://fpdownload.macromedia.com/get/flashplayer/pdc/${version}/install_flash_player_11_linux.i386.tar.gz"; - sha256 = "15655c3kzk1mk00737wgc52i4zz5jh9fkjgjs747qwiik5pnh7x1"; + sha256 = "1vzxai3b6d7xs34h7qj1nal9i7vvnv6k7rb37rqxaiv2yf58nw9h"; } else throw "Flash Player is not supported on this platform"; diff --git a/pkgs/applications/networking/drive/default.nix b/pkgs/applications/networking/drive/default.nix new file mode 100644 index 000000000000..0af104fa380f --- /dev/null +++ b/pkgs/applications/networking/drive/default.nix @@ -0,0 +1,29 @@ +{ lib, goPackages, fetchFromGitHub }: + +with goPackages; + +buildGoPackage rec { + rev = "4530cf8d59e1047cb1c005a6bd5b14ecb98b9e68"; + name = "drive-${lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/drive"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "drive"; + sha256 = "1y4qlzvgg84mh8l6bhaazzy6bv6dwjcbpm0rxvvc5aknvvh581ps"; + }; + + subPackages = [ "cmd/drive" ]; + + buildInputs = [ pb go-isatty command dts odeke-em.log statos xon odeke-em.google-api-go-client cli-spinner oauth2 text net ]; + + dontInstallSrc = true; + + meta = with lib; { + description = "A tiny program to pull or push Google Drive files"; + homepage = https://github.com/odeke-em/drive; + license = licenses.asl20; + maintainers = with maintainers; [ bobvanderlinden ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/networking/dropbox/default.nix b/pkgs/applications/networking/dropbox/default.nix index 14360f9ff0bb..33df71c62c38 100644 --- a/pkgs/applications/networking/dropbox/default.nix +++ b/pkgs/applications/networking/dropbox/default.nix @@ -19,11 +19,11 @@ let # NOTE: When updating, please also update in current stable, as older versions stop working - version = "3.4.6"; + version = "3.6.7"; sha256 = { - "x86_64-linux" = "0crhv21q48lwa86qcqgbcd9g73biibfrc2vgbavi67cwxvzcskky"; - "i686-linux" = "0kli84kzg1wcwszjni948zb4qih8mynmyqhdwyiv1l7v5lrhb8k2"; + "x86_64-linux" = "1jwzrpw382amx0jap9m411a3yvkc9iwnw6n35kwq3infmbwjs6q8"; + "i686-linux" = "0rjd908bhfk00qh6gvizf2fyfb3cccd78spyvh435z377x2pmxzy"; }."${stdenv.system}" or (throw "system ${stdenv.system} not supported"); arch = diff --git a/pkgs/applications/networking/instant-messengers/mcabber/default.nix b/pkgs/applications/networking/instant-messengers/mcabber/default.nix index 6c7e47978414..17ad6c25da77 100644 --- a/pkgs/applications/networking/instant-messengers/mcabber/default.nix +++ b/pkgs/applications/networking/instant-messengers/mcabber/default.nix @@ -14,6 +14,8 @@ stdenv.mkDerivation rec { buildInputs = [ openssl ncurses pkgconfig glib loudmouth libotr gpgme ]; configureFlags = "--with-openssl=${openssl} --enable-modules --enable-otr"; + + doCheck = true; meta = with stdenv.lib; { homepage = http://mcabber.com/; diff --git a/pkgs/applications/networking/mailreaders/mailnag/default.nix b/pkgs/applications/networking/mailreaders/mailnag/default.nix new file mode 100644 index 000000000000..e4253f5bff57 --- /dev/null +++ b/pkgs/applications/networking/mailreaders/mailnag/default.nix @@ -0,0 +1,46 @@ +{ stdenv, buildPythonPackage, fetchurl, gettext, gtk3, pythonPackages +, gdk_pixbuf, libnotify, gst_all_1 +, libgnome_keyring3 ? null, networkmanager ? null +}: + +buildPythonPackage rec { + name = "mailnag-${version}"; + version = "1.1.0"; + + src = fetchurl { + url = "https://github.com/pulb/mailnag/archive/v${version}.tar.gz"; + sha256 = "0li4kvxjmbz3nqg6bysgn2wdazqrd7gm9fym3rd7148aiqqwa91r"; + }; + + # Sometimes the generated output isn't identical. It seems like there's a + # race condtion while patching the Mailnag/commons/dist_cfg.py file. This is + # a small workaround to produce deterministic builds. + # For more information see https://github.com/NixOS/nixpkgs/pull/8279 + setupPyBuildFlags = [ "--build-base=$PWD" ]; + + buildInputs = [ + gettext gtk3 pythonPackages.pygobject3 pythonPackages.dbus + pythonPackages.pyxdg gdk_pixbuf libnotify gst_all_1.gstreamer + gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good + gst_all_1.gst-plugins-bad libgnome_keyring3 networkmanager + ]; + + preFixup = '' + for script in mailnag mailnag-config; do + wrapProgram $out/bin/$script \ + --set GDK_PIXBUF_MODULE_FILE "$GDK_PIXBUF_MODULE_FILE" \ + --prefix GI_TYPELIB_PATH : "$GI_TYPELIB_PATH" \ + --prefix GST_PLUGIN_SYSTEM_PATH_1_0 : "$GST_PLUGIN_SYSTEM_PATH_1_0" \ + --prefix XDG_DATA_DIRS : "$GSETTINGS_SCHEMAS_PATH:$out/share" \ + --prefix PYTHONPATH : "$PYTHONPATH" + done + ''; + + meta = with stdenv.lib; { + description = "An extensible mail notification daemon"; + homepage = https://github.com/pulb/mailnag; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ jgeerds ]; + }; +} diff --git a/pkgs/applications/networking/mailreaders/mailpile/default.nix b/pkgs/applications/networking/mailreaders/mailpile/default.nix index 695e2b381576..c43944dc5979 100644 --- a/pkgs/applications/networking/mailreaders/mailpile/default.nix +++ b/pkgs/applications/networking/mailreaders/mailpile/default.nix @@ -27,7 +27,7 @@ pythonPackages.buildPythonPackage rec { meta = with stdenv.lib; { description = "A modern, fast web-mail client with user-friendly encryption and privacy features"; homepage = https://www.mailpile.is/; - license = map (getAttr "shortName") [ licenses.asl20 licenses.agpl3 ]; + license = [ licenses.asl20 licenses.agpl3 ]; platforms = platforms.linux; maintainers = [ maintainers.iElectric ]; }; diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix index 23e4f397e824..a5806b7dfe88 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/default.nix @@ -19,7 +19,10 @@ , kerberos , libX11 , libXScrnSaver +, libXcomposite +, libXdamage , libXext +, libXfixes , libXinerama , libXrender , libXt @@ -88,7 +91,10 @@ stdenv.mkDerivation { kerberos libX11 libXScrnSaver + libXcomposite + libXdamage libXext + libXfixes libXinerama libXrender libXt @@ -112,25 +118,15 @@ stdenv.mkDerivation { ln -s "$prefix/usr/lib/thunderbird-bin-${version}/thunderbird" "$out/bin/" for executable in \ - thunderbird mozilla-xremote-client thunderbird-bin plugin-container \ - updater + thunderbird crashreporter thunderbird-bin plugin-container updater do patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ "$out/usr/lib/thunderbird-bin-${version}/$executable" done - for executable in \ - thunderbird mozilla-xremote-client thunderbird-bin plugin-container \ - updater \ - components/libdbusservice.so components/libmozgnome.so \ - libnssdbm3.so libsmime3.so libxul.so libprldap60.so libnss3.so \ - libplc4.so libfreebl3.so libmozsqlite3.so libmozalloc.so libnspr4.so \ - libssl3.so libldif60.so libsoftokn3.so libldap60.so libnssutil3.so \ - libnssckbi.so libplds4.so - do + find . -executable -type f -exec \ patchelf --set-rpath "$libPath" \ - "$out/usr/lib/thunderbird-bin-${version}/$executable" - done + "$out/usr/lib/thunderbird-bin-${version}/{}" \; # Create a desktop item. mkdir -p $out/share/applications diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix index 8dce20f60dab..66f2fa87e395 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix @@ -4,117 +4,123 @@ # ruby generate_source.rb > source.nix { - version = "31.7.0"; + version = "38.0.1"; sources = [ - { locale = "ar"; arch = "linux-i686"; sha1 = "8d5dd6af05d9a285097db7f96372464e2c48a7fe"; } - { locale = "ar"; arch = "linux-x86_64"; sha1 = "07866e3716bc3bd370e4aa4711ee2882be8380b9"; } - { locale = "ast"; arch = "linux-i686"; sha1 = "f9c353e03792ade2c3df9842bad6707c50b59395"; } - { locale = "ast"; arch = "linux-x86_64"; sha1 = "ecbfaa883c2dda597213ca739e92c30ec9c2eac1"; } - { locale = "be"; arch = "linux-i686"; sha1 = "ac1abca375cfbc2e45b7eb0f66b9cef73924ae4e"; } - { locale = "be"; arch = "linux-x86_64"; sha1 = "5f296643c42890a200416678a6ed8240ee219d9f"; } - { locale = "bg"; arch = "linux-i686"; sha1 = "4b59b171b67641097da95fd76113efe1019fd2aa"; } - { locale = "bg"; arch = "linux-x86_64"; sha1 = "13d5124fd8925de174f83a8075fb711aa14438b7"; } - { locale = "bn-BD"; arch = "linux-i686"; sha1 = "833c826ee2be3c8664060d4ad24c508b5c122a5e"; } - { locale = "bn-BD"; arch = "linux-x86_64"; sha1 = "b29fb50d9eb83e98802655236a6c1ccb56bf6be3"; } - { locale = "br"; arch = "linux-i686"; sha1 = "5985c09eab409db0c62e525e9cd3d7469b82f0e1"; } - { locale = "br"; arch = "linux-x86_64"; sha1 = "2e4e3efe1d89b8cf329a64894807b69555e505e2"; } - { locale = "ca"; arch = "linux-i686"; sha1 = "1a81aabe1ded11bde92349e8b9f5ae499aaebdfa"; } - { locale = "ca"; arch = "linux-x86_64"; sha1 = "406212f107939a627f2166d8fc6a72a0dcff56a4"; } - { locale = "cs"; arch = "linux-i686"; sha1 = "6cc272e25d45e54c6008da968884de039eba9db9"; } - { locale = "cs"; arch = "linux-x86_64"; sha1 = "6f7e54ff4fe7d8bfa477475aaad371fc8b2f85d4"; } - { locale = "da"; arch = "linux-i686"; sha1 = "8f944829ef98bfdb46eadfd10fafe75a353c1a4a"; } - { locale = "da"; arch = "linux-x86_64"; sha1 = "f22e4293a3462effa0a928be3ae1ddbd8273450f"; } - { locale = "de"; arch = "linux-i686"; sha1 = "c115ea9356b457b25526c8469ebcf7a8e1c6241a"; } - { locale = "de"; arch = "linux-x86_64"; sha1 = "04ac40b3e10f96e17db70c9541040970cbe2e480"; } - { locale = "el"; arch = "linux-i686"; sha1 = "b0ccb81db2b8cb505ade10a0fc1eaf4322f7de0d"; } - { locale = "el"; arch = "linux-x86_64"; sha1 = "410da87c432e3d4e4ddfbe4912bc00c8fcfb8dfd"; } - { locale = "en-GB"; arch = "linux-i686"; sha1 = "b91bea9a1813f1772a85873fb712c9857234864f"; } - { locale = "en-GB"; arch = "linux-x86_64"; sha1 = "f6a08558fb3b6ebd79fdf9b359286b7ba58f2a9c"; } - { locale = "en-US"; arch = "linux-i686"; sha1 = "b433601ffdf83cc2a90224f683f627f562d8e3e3"; } - { locale = "en-US"; arch = "linux-x86_64"; sha1 = "68624fead16c459f87cbdeefd75326bcabccd805"; } - { locale = "es-AR"; arch = "linux-i686"; sha1 = "14c4a6abb6269dea926efccfdae41d2eeab9031a"; } - { locale = "es-AR"; arch = "linux-x86_64"; sha1 = "ffd800950b8a768d4e7ec4c8666fc2e7a390a080"; } - { locale = "es-ES"; arch = "linux-i686"; sha1 = "61889cee58be7c5da0f3424faae5192f07d31651"; } - { locale = "es-ES"; arch = "linux-x86_64"; sha1 = "360335d5c3a1eccaba29095f88d9b50dc04fbc6d"; } - { locale = "et"; arch = "linux-i686"; sha1 = "ba1e1dbcb1c0c87ba1c916b1053cf876e42d76bf"; } - { locale = "et"; arch = "linux-x86_64"; sha1 = "c40a2e0c70d3c3af5e0c34045864a7279f95b2fa"; } - { locale = "eu"; arch = "linux-i686"; sha1 = "45c6270bb1350799df089620cdae4919833d5a54"; } - { locale = "eu"; arch = "linux-x86_64"; sha1 = "ee8cacf035658fda1605f3a2968c56fa03cd73d4"; } - { locale = "fi"; arch = "linux-i686"; sha1 = "45329cd3222d74cefaa0e96e18b71b6ddc844e77"; } - { locale = "fi"; arch = "linux-x86_64"; sha1 = "47c1ec1e67829a86111a76f6ea6cb40c9f178066"; } - { locale = "fr"; arch = "linux-i686"; sha1 = "1f2e1edbb49f141c1ac63f20e47bc4bcbe0361f4"; } - { locale = "fr"; arch = "linux-x86_64"; sha1 = "cf70711b4fb6130b31d3286ad1b2a102d5cb8fc5"; } - { locale = "fy-NL"; arch = "linux-i686"; sha1 = "938ee57e657b3b2f0a228bc1dc7a9bc2eebee1cc"; } - { locale = "fy-NL"; arch = "linux-x86_64"; sha1 = "5c807541fa4e232b6b5119cbc482a79dd9e4f54e"; } - { locale = "ga-IE"; arch = "linux-i686"; sha1 = "6f2ef03c505f4936f6263b643bbfd6e0befd54f4"; } - { locale = "ga-IE"; arch = "linux-x86_64"; sha1 = "7246ed88b0c3f504ca0043f3f20c5cc86eea8ac6"; } - { locale = "gd"; arch = "linux-i686"; sha1 = "130f7ae3c0127d00e24946e9ec2558161fd3fcf1"; } - { locale = "gd"; arch = "linux-x86_64"; sha1 = "aed0e1e7e699c6df4538663dc6a0556a106cb35f"; } - { locale = "gl"; arch = "linux-i686"; sha1 = "69fca12c63c023f689463de709db731073a3c812"; } - { locale = "gl"; arch = "linux-x86_64"; sha1 = "45ab4866e3f6989e4a08920564292622abea7f97"; } - { locale = "he"; arch = "linux-i686"; sha1 = "2898eed89af21c6a4122937bf596b97828cb9271"; } - { locale = "he"; arch = "linux-x86_64"; sha1 = "a3fb3b8564fcbe8cad29d430665d3f369d765369"; } - { locale = "hr"; arch = "linux-i686"; sha1 = "143d8dcbccd3ad219330d7389e93597cb98d20f8"; } - { locale = "hr"; arch = "linux-x86_64"; sha1 = "3fdc0095646678c2885e374e277ab50c4a4ffe53"; } - { locale = "hu"; arch = "linux-i686"; sha1 = "4c135cfaa8644fab4558d53eb7f5f0ae53ed3704"; } - { locale = "hu"; arch = "linux-x86_64"; sha1 = "a4faeb5aa6dc7f6a16d436a56ef9f954c80271fd"; } - { locale = "hy-AM"; arch = "linux-i686"; sha1 = "f3e60e515fa20c4092ecf4df64970bc750c849e5"; } - { locale = "hy-AM"; arch = "linux-x86_64"; sha1 = "2d6ea4a41a33db4e2aeb67d7bcd38f32f427f757"; } - { locale = "id"; arch = "linux-i686"; sha1 = "cd97780c5f70dca5e9c2a61e9af11f38f79b014b"; } - { locale = "id"; arch = "linux-x86_64"; sha1 = "da2ae751b6b0dd2caf5c54fcd30560a57c6746cb"; } - { locale = "is"; arch = "linux-i686"; sha1 = "f6f3b56e8b134e93e30ecfcf706e9ddbb9b181cc"; } - { locale = "is"; arch = "linux-x86_64"; sha1 = "a922a569b293005e5efc797bf51e0c33e87cea7f"; } - { locale = "it"; arch = "linux-i686"; sha1 = "2643526d774e44fc41b0b7b6872ba683b01a9c77"; } - { locale = "it"; arch = "linux-x86_64"; sha1 = "e91689f635060087f8c8c9806ac1607a59e26776"; } - { locale = "ja"; arch = "linux-i686"; sha1 = "dafca3f2c34ae417b5bd3065026af4a075c9bee7"; } - { locale = "ja"; arch = "linux-x86_64"; sha1 = "6a1d03062d599ea35af8479dea3e6cfc45840ba1"; } - { locale = "ko"; arch = "linux-i686"; sha1 = "9b92baecd3906b35499513723685cd791e1aab9e"; } - { locale = "ko"; arch = "linux-x86_64"; sha1 = "116c8b02f8be6c739595cc88888a19e225ed865d"; } - { locale = "lt"; arch = "linux-i686"; sha1 = "85f44f77cc27deb9cf95487a9a3673918f102bd9"; } - { locale = "lt"; arch = "linux-x86_64"; sha1 = "0bd82afbe4c27318ce8882eff62e53fda13d3590"; } - { locale = "nb-NO"; arch = "linux-i686"; sha1 = "07cd4e46a5811096759c565bb533adf1ee9cb0d9"; } - { locale = "nb-NO"; arch = "linux-x86_64"; sha1 = "ece8a8b69aef74f9c22db1660a14ae5205aa7ff7"; } - { locale = "nl"; arch = "linux-i686"; sha1 = "1f1e30f5aef29bf96d0e2b8609acb03d1b6ec0aa"; } - { locale = "nl"; arch = "linux-x86_64"; sha1 = "5a0ffeb38b183b835966568c1b3fc719c0908fea"; } - { locale = "nn-NO"; arch = "linux-i686"; sha1 = "9bbb5e61eecf09d059cfb17bd75fd0e64c455d78"; } - { locale = "nn-NO"; arch = "linux-x86_64"; sha1 = "e1115c4451ede51833387ef8c592ce7342d508d3"; } - { locale = "pa-IN"; arch = "linux-i686"; sha1 = "65dcef7d9bfcdbd35a09ff6a9e436261b79e4d90"; } - { locale = "pa-IN"; arch = "linux-x86_64"; sha1 = "cd64fb45459e699e0c8c2269a52bb0512e592db0"; } - { locale = "pl"; arch = "linux-i686"; sha1 = "ea2650cb700a42dc96fb56ad1860061e87626bc9"; } - { locale = "pl"; arch = "linux-x86_64"; sha1 = "976a52d128e8d912363fadb7e14adec0a7c9d973"; } - { locale = "pt-BR"; arch = "linux-i686"; sha1 = "323b876b6c11c4881c280cdb64d2867076970abf"; } - { locale = "pt-BR"; arch = "linux-x86_64"; sha1 = "952d5b82b0d3d47d5494f2d9667fc2a5b88408df"; } - { locale = "pt-PT"; arch = "linux-i686"; sha1 = "5ce1feb2446c6dba96c3b3a0e9afd6a00655b738"; } - { locale = "pt-PT"; arch = "linux-x86_64"; sha1 = "83115d2fdc8494451b79cc67d581c77b64c27af4"; } - { locale = "rm"; arch = "linux-i686"; sha1 = "a26678482d8c425f3291116e99e0196952d0cb09"; } - { locale = "rm"; arch = "linux-x86_64"; sha1 = "327391e44d43d58b4d3fee97904a336f5c52648e"; } - { locale = "ro"; arch = "linux-i686"; sha1 = "8b67f03c053f89af7d50331eec056402cfbd5bf4"; } - { locale = "ro"; arch = "linux-x86_64"; sha1 = "15ec5c6fa7e6aa843910bc6c6479bf308393b52f"; } - { locale = "ru"; arch = "linux-i686"; sha1 = "09127b5202cf63c7b9715813061ca79bc27c2f37"; } - { locale = "ru"; arch = "linux-x86_64"; sha1 = "8b409350741edcd33b3eeaf7928a133eb1c2a399"; } - { locale = "si"; arch = "linux-i686"; sha1 = "733d049ffd66d5007ef68c761f2d84ab579bd400"; } - { locale = "si"; arch = "linux-x86_64"; sha1 = "dc5460e82bdf613e9d778687d11533dc97b77ffb"; } - { locale = "sk"; arch = "linux-i686"; sha1 = "b4b9b10b53c48adf224507faf77a04c19c750d58"; } - { locale = "sk"; arch = "linux-x86_64"; sha1 = "81aeb1d95fd2b220c17f388ba882127fc6d290de"; } - { locale = "sl"; arch = "linux-i686"; sha1 = "a621f04b7e5accf05f946ce775391667579679e6"; } - { locale = "sl"; arch = "linux-x86_64"; sha1 = "f9086f1ce56d84e3b732f22d086fcce43d2373a7"; } - { locale = "sq"; arch = "linux-i686"; sha1 = "1b2b11fd04b7d1979f88268db37510ef231c158b"; } - { locale = "sq"; arch = "linux-x86_64"; sha1 = "f06ad4d533c7144695fbe2eb3ba700bb1d5151b7"; } - { locale = "sr"; arch = "linux-i686"; sha1 = "92d4cd9bbc5f24045295bda6c75420708d593aac"; } - { locale = "sr"; arch = "linux-x86_64"; sha1 = "53e661b5c485fae7c27770d2a2701d6d21e481c9"; } - { locale = "sv-SE"; arch = "linux-i686"; sha1 = "e4614597ef42eaa6ede065b4c3b9f11de491dd5b"; } - { locale = "sv-SE"; arch = "linux-x86_64"; sha1 = "e3c8af45ab65e7977a350ae617cd55afa685e8d0"; } - { locale = "ta-LK"; arch = "linux-i686"; sha1 = "17b3d419fe769a02a360b96042c78c497063b9e8"; } - { locale = "ta-LK"; arch = "linux-x86_64"; sha1 = "cbc34ab650bfc95926b98e63c474f1997a1256fa"; } - { locale = "tr"; arch = "linux-i686"; sha1 = "ba63efda6864a6984d492cda30d4fca6157e26a8"; } - { locale = "tr"; arch = "linux-x86_64"; sha1 = "9b8cb45aab578b3dbfeace90f44dad26eda6e798"; } - { locale = "uk"; arch = "linux-i686"; sha1 = "36a9867155fa0e6924ed62d7dbc350a2425178e1"; } - { locale = "uk"; arch = "linux-x86_64"; sha1 = "abbc155c34c5d404b3143ccc63a1bb5c99c3d395"; } - { locale = "vi"; arch = "linux-i686"; sha1 = "850ac8190adef8d227166b9b4478ea8c88c90287"; } - { locale = "vi"; arch = "linux-x86_64"; sha1 = "afba1f0043ba96a89bc8ab23fe6b6e19af4f826b"; } - { locale = "zh-CN"; arch = "linux-i686"; sha1 = "acda86b5c48b751eb06719754921e7604a1c222e"; } - { locale = "zh-CN"; arch = "linux-x86_64"; sha1 = "a88745a4a8f85d5d2861e40ba8d72b0af73bb055"; } - { locale = "zh-TW"; arch = "linux-i686"; sha1 = "c03e6e4fae7fec1ae0b30e5cb600a4cf28151cc7"; } - { locale = "zh-TW"; arch = "linux-x86_64"; sha1 = "c5788c6672b230681cfb3ee2fe97763ef81d34b1"; } + { locale = "ar"; arch = "linux-i686"; sha1 = "b61125483c46602e64ab7c4b56ff2f9612453ad3"; } + { locale = "ar"; arch = "linux-x86_64"; sha1 = "4ac5de506c61fc769e6805f599cb7131b243812c"; } + { locale = "ast"; arch = "linux-i686"; sha1 = "07ea0b98e651e650d2f11322b5c8ce55bb083217"; } + { locale = "ast"; arch = "linux-x86_64"; sha1 = "b0b37462e0bb5443f408724b62421e59ae68389b"; } + { locale = "be"; arch = "linux-i686"; sha1 = "61feae6377bcca63225ba945b7067dad8eb5a0fa"; } + { locale = "be"; arch = "linux-x86_64"; sha1 = "b58385f605b7a08f17e06faa922899c42a2076c0"; } + { locale = "bg"; arch = "linux-i686"; sha1 = "ddbb0681076511828c91373354aa9a3861ee3943"; } + { locale = "bg"; arch = "linux-x86_64"; sha1 = "734acaa1870773d9ccf687e65d553797b3d00bca"; } + { locale = "bn-BD"; arch = "linux-i686"; sha1 = "32ad3307c919ec10bcbb9f99f8d37bb5daec5903"; } + { locale = "bn-BD"; arch = "linux-x86_64"; sha1 = "4e87b8ff753b1680b0b9b5149fc75238bff91c6d"; } + { locale = "br"; arch = "linux-i686"; sha1 = "b319d6f853311b103c439a482ee12652d751e22f"; } + { locale = "br"; arch = "linux-x86_64"; sha1 = "0254d1edcc2b1fbc8cec01c96482c381d34be88b"; } + { locale = "ca"; arch = "linux-i686"; sha1 = "deb0caf34895379b2e7dd01871c510f92ba96561"; } + { locale = "ca"; arch = "linux-x86_64"; sha1 = "f580f9044bb115b3077ba012fe1b3be289853911"; } + { locale = "cs"; arch = "linux-i686"; sha1 = "045f3d7adade1133325e6607971ec70cad85c91a"; } + { locale = "cs"; arch = "linux-x86_64"; sha1 = "9fc2fa5a44886db96bcdb4d23d69593954a84ca2"; } + { locale = "cy"; arch = "linux-i686"; sha1 = "6fb9ca5be336db1b149e4ac6e53e51fd32fbd84e"; } + { locale = "cy"; arch = "linux-x86_64"; sha1 = "517dfd262c4f23fba743299381f51f7863cd32d7"; } + { locale = "da"; arch = "linux-i686"; sha1 = "bdd5d63545fb09540a5ff8ada7d421deb865dc61"; } + { locale = "da"; arch = "linux-x86_64"; sha1 = "fa4f26001b4281f4bd9b741a897e1a420c40b604"; } + { locale = "de"; arch = "linux-i686"; sha1 = "566603c44ba6df21d7504bfb49ea235f5cb64e00"; } + { locale = "de"; arch = "linux-x86_64"; sha1 = "60675d5905838ac54c0c2a961d88d021c446ec50"; } + { locale = "dsb"; arch = "linux-i686"; sha1 = "74feac72b6ad05b00a6c4495f751f106b77b3997"; } + { locale = "dsb"; arch = "linux-x86_64"; sha1 = "fbb936459a2287117e5638ef78ba1d647f4be41f"; } + { locale = "el"; arch = "linux-i686"; sha1 = "eedbcc1df60912b2f5be83dc2459cd06914b91f5"; } + { locale = "el"; arch = "linux-x86_64"; sha1 = "ead82b60f2b07a63ff84ed6f35f9527c1b030c24"; } + { locale = "en-GB"; arch = "linux-i686"; sha1 = "17ed78e8f063f39a7c73795e9a251f187dc2a04c"; } + { locale = "en-GB"; arch = "linux-x86_64"; sha1 = "42f427fe628cbc182459f66a7d87d78845d50e57"; } + { locale = "en-US"; arch = "linux-i686"; sha1 = "9f264dbd88d96149a92601e33dbed497189b281d"; } + { locale = "en-US"; arch = "linux-x86_64"; sha1 = "a8df74c9655501ee9e4c876b05e14b9a2605a591"; } + { locale = "es-AR"; arch = "linux-i686"; sha1 = "4e467b8e662345bba07ec768055899175823764b"; } + { locale = "es-AR"; arch = "linux-x86_64"; sha1 = "96994e1c9b6e8d27d1b7bf91a2d0d47b25d67bcb"; } + { locale = "es-ES"; arch = "linux-i686"; sha1 = "db1574237be55846c386138b55beacf247cdf8b8"; } + { locale = "es-ES"; arch = "linux-x86_64"; sha1 = "1e474e7001a14bfba44e933cca875b10032b22fc"; } + { locale = "et"; arch = "linux-i686"; sha1 = "3385f3aa8432a66b4f400158ba079808a0982c6b"; } + { locale = "et"; arch = "linux-x86_64"; sha1 = "aad77f411f5c3a6161bbb6b80566d9065e15c8a0"; } + { locale = "eu"; arch = "linux-i686"; sha1 = "98820960354c89dc9e7178b3c783df733597ef27"; } + { locale = "eu"; arch = "linux-x86_64"; sha1 = "77c3946d778ccea30f22a08f38d5336110d87d43"; } + { locale = "fi"; arch = "linux-i686"; sha1 = "63c7a82cbfc8d5c52424244ccab51868aa498416"; } + { locale = "fi"; arch = "linux-x86_64"; sha1 = "a590ff89b5616463ce32091c09c0b74d6f6a8773"; } + { locale = "fr"; arch = "linux-i686"; sha1 = "4e7902977f83139926131db13731632a9c4e105c"; } + { locale = "fr"; arch = "linux-x86_64"; sha1 = "2d7a1e725ae2aad6dfcc2e9d891999a40a242fe9"; } + { locale = "fy-NL"; arch = "linux-i686"; sha1 = "fad0d47e75d9191d85d5d1e6bf2f9f4f5ec08fb2"; } + { locale = "fy-NL"; arch = "linux-x86_64"; sha1 = "ab42e792567affd3007848822eb26afc2bea0e94"; } + { locale = "ga-IE"; arch = "linux-i686"; sha1 = "3faa798e14f9acd36a120b9f4e9c961c27df825c"; } + { locale = "ga-IE"; arch = "linux-x86_64"; sha1 = "afe90e25771a101286365d37470f00c52a8f2392"; } + { locale = "gd"; arch = "linux-i686"; sha1 = "aed0d96aa093a9f168c702d4e1c39d5c6077df3b"; } + { locale = "gd"; arch = "linux-x86_64"; sha1 = "e3faf40265be42ca2c0412a97b4ac689c9d5d6a4"; } + { locale = "gl"; arch = "linux-i686"; sha1 = "1ef2f1f69c042a2aeb340df9faf9019df19dbf35"; } + { locale = "gl"; arch = "linux-x86_64"; sha1 = "bc026a910ea03aa795d59d81836ec5dd6efb1370"; } + { locale = "he"; arch = "linux-i686"; sha1 = "87a2923688d5a9eb63b8a41200ba5afc6c00d954"; } + { locale = "he"; arch = "linux-x86_64"; sha1 = "5067560a1a56d6cbbb163d2b73bce68451956413"; } + { locale = "hr"; arch = "linux-i686"; sha1 = "74605669d56d0cc6e93fecce04d52771680f39f6"; } + { locale = "hr"; arch = "linux-x86_64"; sha1 = "d749c4ad35a02c01e50358d11a1d7034ad402bce"; } + { locale = "hsb"; arch = "linux-i686"; sha1 = "1e0a75dfa4627afa34e2348c71c64501b6ebac12"; } + { locale = "hsb"; arch = "linux-x86_64"; sha1 = "43f703566076db2e3b08703d6e3faac336ffff88"; } + { locale = "hu"; arch = "linux-i686"; sha1 = "b1bc08f9fd116d022c9c2710a9e25d176a1ee2a7"; } + { locale = "hu"; arch = "linux-x86_64"; sha1 = "8fe7b6923d46f30ffbac5a97fe9bde7625a9bc26"; } + { locale = "hy-AM"; arch = "linux-i686"; sha1 = "93f2e69df2c32eb2c33d9a6bf91c00224f5de9e8"; } + { locale = "hy-AM"; arch = "linux-x86_64"; sha1 = "52341cf14ddb124bd591f161eb2c3c566307e6c0"; } + { locale = "id"; arch = "linux-i686"; sha1 = "733d6833cb71d5bd6727991c76f7907b4efeb1c9"; } + { locale = "id"; arch = "linux-x86_64"; sha1 = "2a5fe37753a3399ea8626615493fe3cac4b79586"; } + { locale = "is"; arch = "linux-i686"; sha1 = "0d1bf6bf337598d6e72762716264cb2662ab542c"; } + { locale = "is"; arch = "linux-x86_64"; sha1 = "5dbe72779e2c58cb0d0224e08582cfb1358fc47b"; } + { locale = "it"; arch = "linux-i686"; sha1 = "7bf51283965c48dad5aac2bffbd8223e83bc5c6f"; } + { locale = "it"; arch = "linux-x86_64"; sha1 = "2634b404ca6a9f6a3a194c911ca514311646461f"; } + { locale = "ja"; arch = "linux-i686"; sha1 = "82ed3c27de426361f2cb73c9a34197d2548546d5"; } + { locale = "ja"; arch = "linux-x86_64"; sha1 = "9e9a0eda6fd9354a06071b580686a5387ad291ec"; } + { locale = "ko"; arch = "linux-i686"; sha1 = "e1416907d5748d10a5b0e74c4687787e7343db57"; } + { locale = "ko"; arch = "linux-x86_64"; sha1 = "629ad488888ad62e60bd340e17d565af76b48337"; } + { locale = "lt"; arch = "linux-i686"; sha1 = "d58c886482404929c18fe25cf3aece121eb6a8e7"; } + { locale = "lt"; arch = "linux-x86_64"; sha1 = "e0cfc0a747aae13cf5cf54db6b72e72a5780372f"; } + { locale = "nb-NO"; arch = "linux-i686"; sha1 = "a2e5612b0007a11f74cb3fe330e2234d84f5d35c"; } + { locale = "nb-NO"; arch = "linux-x86_64"; sha1 = "eba10f9d0de6b9937f297ec742e05df53460bfec"; } + { locale = "nl"; arch = "linux-i686"; sha1 = "a1ce06ca18bf93ff87c91fd8677dbe06eadf1159"; } + { locale = "nl"; arch = "linux-x86_64"; sha1 = "180b531bf58f08d89c668b578a3c7c5380900f9f"; } + { locale = "nn-NO"; arch = "linux-i686"; sha1 = "484546422728623005a2d20470c7f6d06870ce96"; } + { locale = "nn-NO"; arch = "linux-x86_64"; sha1 = "f4526c827dcf1d0a11d38bd834807eb4b7f2923f"; } + { locale = "pa-IN"; arch = "linux-i686"; sha1 = "c75275e6a8a19213ea5eb063c8988634bbbe13cc"; } + { locale = "pa-IN"; arch = "linux-x86_64"; sha1 = "0fce05e81e0bb2bf6f7ce051cdee10ceaaaee4cb"; } + { locale = "pl"; arch = "linux-i686"; sha1 = "6d8657b489008122b0a3dabc3b9bb5112529ae16"; } + { locale = "pl"; arch = "linux-x86_64"; sha1 = "b5eff0843c96947d5aa7f7f74ec899630cb9e039"; } + { locale = "pt-BR"; arch = "linux-i686"; sha1 = "f2359b80b8afad50aab695d3cc14e461c21e46e3"; } + { locale = "pt-BR"; arch = "linux-x86_64"; sha1 = "b946a90928e0c7a389dbcf5728c08e7fc5042025"; } + { locale = "pt-PT"; arch = "linux-i686"; sha1 = "dbc60c45551b8db4be970efed6a397bf81d108e6"; } + { locale = "pt-PT"; arch = "linux-x86_64"; sha1 = "77c53b3a401dbfc930f2c5d94ebe6f1a090954e7"; } + { locale = "rm"; arch = "linux-i686"; sha1 = "290f420ba933251168dce7c8e588541cdec886da"; } + { locale = "rm"; arch = "linux-x86_64"; sha1 = "7c40435683e29fd3c7b541cd3ed2a69e39a14245"; } + { locale = "ro"; arch = "linux-i686"; sha1 = "93d016bd3dfbd8b7ad4d8eceb94a638f6e66e751"; } + { locale = "ro"; arch = "linux-x86_64"; sha1 = "2d05ef4da4eac47ee2b37d9d207a20b875ab6c3f"; } + { locale = "ru"; arch = "linux-i686"; sha1 = "4c80bf8509b725c861ee744676e5f8229edd9acd"; } + { locale = "ru"; arch = "linux-x86_64"; sha1 = "60406c09cef691b892dfffffe05d06182a0f5b03"; } + { locale = "si"; arch = "linux-i686"; sha1 = "f7f98b929f290a757dcd67d2f0abc09272e1524f"; } + { locale = "si"; arch = "linux-x86_64"; sha1 = "f73185d1c4d78247154ff4133092f12bcace0189"; } + { locale = "sk"; arch = "linux-i686"; sha1 = "bc78cf179d1145771bc3d76808f47c3074aa848f"; } + { locale = "sk"; arch = "linux-x86_64"; sha1 = "b6cd85fe49e367d36f75c89596cc6826de936c03"; } + { locale = "sl"; arch = "linux-i686"; sha1 = "cc7468c85efaae4ad8f3c4dd629c07420095d6b7"; } + { locale = "sl"; arch = "linux-x86_64"; sha1 = "51236372848448ad80210d340ba5f03b851b1434"; } + { locale = "sq"; arch = "linux-i686"; sha1 = "1cd44cdb36f17d922b04e6f1f31721495b30d9a8"; } + { locale = "sq"; arch = "linux-x86_64"; sha1 = "604de9669330503ea07e24d6f65c2586c6748730"; } + { locale = "sr"; arch = "linux-i686"; sha1 = "ea9f909fd9b7c9125fc109db81ed313bad19ca26"; } + { locale = "sr"; arch = "linux-x86_64"; sha1 = "d71c0b6d31940f24562a74b30349ecd4645b0ee9"; } + { locale = "sv-SE"; arch = "linux-i686"; sha1 = "0c4193b4dc6eae8b5f9515ca8a534f127ee083d8"; } + { locale = "sv-SE"; arch = "linux-x86_64"; sha1 = "cd254aabf8c7cf63c83bec1005ef0e9f540eed7c"; } + { locale = "ta-LK"; arch = "linux-i686"; sha1 = "9944dd6c0cb20bcd8f513c0cdabe62245b0212dc"; } + { locale = "ta-LK"; arch = "linux-x86_64"; sha1 = "7452f16a96293f871ac9ac99b37f7b855b8e2acf"; } + { locale = "tr"; arch = "linux-i686"; sha1 = "2036043c9edcaf3e85c2c9b33ae4166d339c3185"; } + { locale = "tr"; arch = "linux-x86_64"; sha1 = "6b4018c8c4f6f6161f51b1fd629fa5c0ddf452d2"; } + { locale = "uk"; arch = "linux-i686"; sha1 = "af09c61146d407ab2e6baa3f71ce859a246cb559"; } + { locale = "uk"; arch = "linux-x86_64"; sha1 = "8b41790e1c6941c1b46c1e06b21c6254fee49c51"; } + { locale = "vi"; arch = "linux-i686"; sha1 = "fbaee422c7746c10e2537fbc8fdf86d322e49a6c"; } + { locale = "vi"; arch = "linux-x86_64"; sha1 = "65d5ce60fc3848c46b88c5e7229e25f412e1d5bf"; } + { locale = "zh-CN"; arch = "linux-i686"; sha1 = "b865c22c6c60d21ba00a60a54a9d03a5c34254cf"; } + { locale = "zh-CN"; arch = "linux-x86_64"; sha1 = "648dec573c9d0f680be469bad8b38fe6d3550899"; } + { locale = "zh-TW"; arch = "linux-i686"; sha1 = "b3f58a6053079be6231f843f05daf481c39edf6d"; } + { locale = "zh-TW"; arch = "linux-x86_64"; sha1 = "bab9d483870909d705fa77bcfb9d8c08966bae50"; } ]; } diff --git a/pkgs/applications/networking/mumble/default.nix b/pkgs/applications/networking/mumble/default.nix index 611d77eb2150..cd361fe7ede3 100644 --- a/pkgs/applications/networking/mumble/default.nix +++ b/pkgs/applications/networking/mumble/default.nix @@ -15,11 +15,11 @@ let in stdenv.mkDerivation rec { name = "mumble-${version}"; - version = "1.2.8"; + version = "1.2.9"; src = fetchurl { url = "mirror://sourceforge/mumble/${name}.tar.gz"; - sha256 = "0ng1xd7i0951kqnd9visf84y2dcwia79a1brjwfvr1wnykgw6bsc"; + sha256 = "1frc6b284cl36czrsrg47mnmg1im0pjqscp877gz2rrjc62pxlab"; }; patches = optional jackSupport ./mumble-jack-support.patch; diff --git a/pkgs/applications/networking/newsreaders/liferea/default.nix b/pkgs/applications/networking/newsreaders/liferea/default.nix index 26078c8e5830..28baa2f7b67d 100644 --- a/pkgs/applications/networking/newsreaders/liferea/default.nix +++ b/pkgs/applications/networking/newsreaders/liferea/default.nix @@ -6,14 +6,14 @@ }: let pname = "liferea"; - version = "1.10.14"; + version = "1.10.15"; in stdenv.mkDerivation rec { name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/lwindolf/${pname}/releases/download/v${version}/${name}.tar.bz2"; - sha256 = "0szazfknarw6ivnr4flr928ar309pz2mv6alc6pk6l1i9jchcnfs"; + sha256 = "0iicw42rf0vhq4xs81awlj5v3v7xfid3h5fh87f3bqbpn9pmifdg"; }; buildInputs = with gst_all_1; [ diff --git a/pkgs/applications/networking/remote/teamviewer/10.nix b/pkgs/applications/networking/remote/teamviewer/10.nix index cd1833261f49..4b919d36fb62 100644 --- a/pkgs/applications/networking/remote/teamviewer/10.nix +++ b/pkgs/applications/networking/remote/teamviewer/10.nix @@ -1,5 +1,8 @@ -{ stdenv, fetchurl, libX11, libXtst, libXext, libXdamage, libXfixes, wineUnstable, makeWrapper, libXau -, bash, patchelf, config }: +{ stdenv, fetchurl, libX11, libXtst, libXext, libXdamage, libXfixes, +wineUnstable, makeWrapper, libXau , bash, patchelf, config, +acceptLicense ? false }: + +with stdenv.lib; let topath = "${wineUnstable}/bin"; @@ -37,11 +40,18 @@ stdenv.mkDerivation { patchelf --set-rpath "${stdenv.cc.cc}/lib64:${stdenv.cc.cc}/lib:${libX11}/lib:${libXext}/lib:${libXau}/lib:${libXdamage}/lib:${libXfixes}/lib" $out/share/teamviewer/tv_bin/teamviewerd patchelf --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" $out/share/teamviewer/tv_bin/teamviewerd ln -s $out/share/teamviewer/tv_bin/teamviewerd $out/bin/ + ${optionalString acceptLicense " + cat > $out/share/teamviewer/config/global.conf << EOF + [int32] EulaAccepted = 1 + [int32] EulaAcceptedRevision = 6 + EOF + "} ''; meta = { homepage = "http://www.teamviewer.com"; - license = stdenv.lib.licenses.unfree; + license = licenses.unfree; description = "Desktop sharing application, providing remote support and online meetings"; + maintainers = with maintainers; [ jagajaga ]; }; } diff --git a/pkgs/applications/networking/remote/x2goclient/default.nix b/pkgs/applications/networking/remote/x2goclient/default.nix index 328a156260b0..30e40a965f70 100644 --- a/pkgs/applications/networking/remote/x2goclient/default.nix +++ b/pkgs/applications/networking/remote/x2goclient/default.nix @@ -17,7 +17,8 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ cups libssh libXpm nxproxy openldap makeWrapper qt4 ]; + buildInputs = [ cups libssh libXpm nxproxy openldap qt4 ]; + nativeBuildInputs = [ makeWrapper ]; patchPhase = '' substituteInPlace Makefile \ diff --git a/pkgs/applications/networking/syncthing/default.nix b/pkgs/applications/networking/syncthing/default.nix index 1e26e61161cc..9a91f3090a19 100644 --- a/pkgs/applications/networking/syncthing/default.nix +++ b/pkgs/applications/networking/syncthing/default.nix @@ -4,12 +4,12 @@ with goPackages; buildGoPackage rec { name = "syncthing-${version}"; - version = "0.11.7"; + version = "0.11.9"; goPackagePath = "github.com/syncthing/syncthing"; src = fetchgit { url = "git://github.com/syncthing/syncthing.git"; rev = "refs/tags/v${version}"; - sha256 = "7d928a255c61c7b89d460cc70c79bd8e85bef3e919c157f59d5709fef4153c8d"; + sha256 = "353528e152bbfd5075c4f85a54bce507ab3d8855f702a1399a48196bc19d226b"; }; subPackages = [ "cmd/syncthing" ]; @@ -26,7 +26,7 @@ buildGoPackage rec { homepage = http://syncthing.net/; description = "Replaces Dropbox and BitTorrent Sync with something open, trustworthy and decentralized"; license = lib.licenses.mit; - maintainers = with lib.maintainers; [ matejc ]; + maintainers = with lib.maintainers; [ matejc theuni ]; platforms = with lib.platforms; unix; }; } diff --git a/pkgs/applications/office/abiword/default.nix b/pkgs/applications/office/abiword/default.nix index 2aaf1e8f032c..18ece7a74019 100644 --- a/pkgs/applications/office/abiword/default.nix +++ b/pkgs/applications/office/abiword/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, pkgconfig, gtk3, libglade, libgnomecanvas, fribidi , libpng, popt, libgsf, enchant, wv, librsvg, bzip2, libjpeg, perl -, boost, libxslt +, boost, libxslt, goffice, makeWrapper, iconTheme }: stdenv.mkDerivation rec { @@ -16,9 +16,14 @@ stdenv.mkDerivation rec { buildInputs = [ pkgconfig gtk3 libglade librsvg bzip2 libgnomecanvas fribidi libpng popt - libgsf enchant wv libjpeg perl boost libxslt + libgsf enchant wv libjpeg perl boost libxslt goffice makeWrapper iconTheme ]; + postFixup = '' + wrapProgram "$out/bin/abiword" \ + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH" + ''; + meta = with stdenv.lib; { description = "Word processing program, similar to Microsoft Word"; homepage = http://www.abisource.com/; diff --git a/pkgs/applications/office/gnumeric/default.nix b/pkgs/applications/office/gnumeric/default.nix index 02a78a2b2d1f..e54dd591cfdc 100644 --- a/pkgs/applications/office/gnumeric/default.nix +++ b/pkgs/applications/office/gnumeric/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, pkgconfig, intltool, perl, perlXMLParser -, gnome3, makeWrapper, gtk3 +, goffice, gnome3, makeWrapper, gtk3 }: stdenv.mkDerivation rec { @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { # ToDo: optional libgda, python, introspection? buildInputs = [ pkgconfig intltool perl perlXMLParser - gnome3.goffice gtk3 makeWrapper gnome3.defaultIconTheme + goffice gtk3 makeWrapper gnome3.defaultIconTheme ]; enableParallelBuilding = true; diff --git a/pkgs/applications/office/osmo/default.nix b/pkgs/applications/office/osmo/default.nix new file mode 100644 index 000000000000..81f5773a453f --- /dev/null +++ b/pkgs/applications/office/osmo/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchurl, pkgconfig, gtk, libxml2, gettext, libical, libnotify +, libarchive, gtkspell, webkitgtk2, libgringotts }: + +stdenv.mkDerivation rec { + name = "osmo-${version}"; + version = "0.2.12"; + + src = fetchurl { + url = "mirror://sourceforge/osmo-pim/${name}.tar.gz"; + sha256 = "0y3bpsi18v3dxb3vsy0dr7cgf692g4p62l84hj9l2bpr2hbabgck"; + }; + + buildInputs = [ pkgconfig gtk libxml2 gettext libical libnotify libarchive + gtkspell webkitgtk2 libgringotts ]; + + meta = with stdenv.lib; { + description = "A handy personal organizer"; + homepage = http://clayo.org/osmo/; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ pSub ]; + }; +} diff --git a/pkgs/applications/science/logic/abc/default.nix b/pkgs/applications/science/logic/abc/default.nix index 174dfe8f2b26..236045fa3358 100644 --- a/pkgs/applications/science/logic/abc/default.nix +++ b/pkgs/applications/science/logic/abc/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { name = "abc-verifier-${version}"; - version = "20150406"; + version = "20150614"; src = fetchhg { url = "https://bitbucket.org/alanmi/abc"; - rev = "7d9c50a17d8676ad0c9792bb87102d7cb4b10667"; - sha256 = "1gg5jjfjjnv0fl7jsz37hzd9dpv58r8p0q8qvms0r289fcdxalcx"; + rev = "38661894bc1287cad9bd35978bd252dbfe3e6c56"; + sha256 = "04v0hkvj501r10pj3yrqrk2463d1d7lhl8dzfjwkmlbmlmpjlvvv"; }; buildInputs = [ readline ]; @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "Sequential Logic Synthesis and Formal Verification"; + description = "A tool for squential logic synthesis and ormal verification"; homepage = "www.eecs.berkeley.edu/~alanmi/abc/abc.htm"; license = stdenv.lib.licenses.mit; platforms = stdenv.lib.platforms.unix; diff --git a/pkgs/applications/science/logic/cvc4/default.nix b/pkgs/applications/science/logic/cvc4/default.nix index 5b2e9c54d6f8..769f86d5d77a 100644 --- a/pkgs/applications/science/logic/cvc4/default.nix +++ b/pkgs/applications/science/logic/cvc4/default.nix @@ -1,23 +1,23 @@ -{stdenv, fetchurl, gmp, libantlr3c, boost}: +{ stdenv, fetchurl, gmp, libantlr3c, boost, autoreconfHook }: + +stdenv.mkDerivation rec { + name = "cvc4-${version}"; + version = "1.4"; -stdenv.mkDerivation { - name = "cvc4-1.4"; src = fetchurl { - url = http://cvc4.cs.nyu.edu/builds/src/cvc4-1.4.tar.gz; + url = "http://cvc4.cs.nyu.edu/builds/src/cvc4-${version}.tar.gz"; sha256 = "093h7zgv4z4ad503j30dpn8k2pz9m90pvd7gi5axdmwsxgwlzzkn"; }; - buildInputs = [ gmp libantlr3c boost ]; - + buildInputs = [ gmp libantlr3c boost autoreconfHook ]; preConfigure = "patchShebangs ./src/"; - doChecks = true; meta = with stdenv.lib; { - description = "An efficient open-source automatic theorem prover for satisfiability modulo theories (SMT) problems"; - homepage = http://cvc4.cs.nyu.edu/web/; - license = licenses.bsd3; - platforms = platforms.unix; - maintainers = with maintainers; [ vbgl ]; + description = "A high-performance theorem prover and SMT solver"; + homepage = http://cvc4.cs.nyu.edu/web/; + license = licenses.bsd3; + platforms = platforms.unix; + maintainers = with maintainers; [ vbgl thoughtpolice ]; }; } diff --git a/pkgs/applications/science/logic/isabelle/default.nix b/pkgs/applications/science/logic/isabelle/default.nix index 88bbe820e2f3..97534b0ddd36 100644 --- a/pkgs/applications/science/logic/isabelle/default.nix +++ b/pkgs/applications/science/logic/isabelle/default.nix @@ -12,11 +12,11 @@ stdenv.mkDerivation { src = if stdenv.isDarwin then fetchurl { - url = http://isabelle.in.tum.de/dist/Isabelle2014_macos.tar.gz; + url = http://isabelle.in.tum.de/website-Isabelle2014/dist/Isabelle2014_macos.tar.gz; sha256 = "1aa3vz2nnkkyd4mlsqbs69jqfxlll5h0k5fj9m1j9wqiddqwvwcf"; } else fetchurl { - url = http://isabelle.in.tum.de/dist/Isabelle2014_linux.tar.gz; + url = http://isabelle.in.tum.de/website-Isabelle2014/dist/Isabelle2014_linux.tar.gz; sha256 = "0z81pwwllavka4r57fx6yi9kbpbb9xbanp8dsjix49qpyj2a72jy"; }; diff --git a/pkgs/applications/science/logic/picosat/default.nix b/pkgs/applications/science/logic/picosat/default.nix index 6c2cce0ea4b1..fb5acc64c4dc 100644 --- a/pkgs/applications/science/logic/picosat/default.nix +++ b/pkgs/applications/science/logic/picosat/default.nix @@ -1,41 +1,33 @@ -{stdenv, fetchurl }: - -let - version = "936"; - pname = "picosat"; - -in +{ stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "${pname}-${version}"; + name = "picosat-${version}"; + version = "960"; src = fetchurl { url = "http://fmv.jku.at/picosat/${name}.tar.gz"; - sha256 = "02hq68fmfjs085216wsj13ff6i1rhc652yscl16w9jzpfqzly91n"; + sha256 = "05z8cfjk84mkna5ryqlq2jiksjifg3jhlgbijaq36sbn0i51iczd"; }; dontAddPrefix = true; - - # configureFlags = "--shared"; the ./configure file is broken and doesn't accept this parameter :( - patchPhase = '' - sed -e 's/^shared=no/shared=yes/' -i configure - ''; + configureFlags = "--shared"; installPhase = '' - mkdir -p "$out"/bin + mkdir -p $out/bin $out/lib $out/include/picosat cp picomus "$out"/bin cp picosat "$out"/bin - mkdir -p "$out"/lib + cp libpicosat.a "$out"/lib cp libpicosat.so "$out"/lib - mkdir -p "$out"/include/picosat + cp picosat.h "$out"/include/picosat ''; meta = { - homepage = http://fmv.jku.at/picosat/; description = "SAT solver with proof and core support"; - license = stdenv.lib.licenses.mit; - maintainers = [ stdenv.lib.maintainers.roconnor ]; + homepage = http://fmv.jku.at/picosat/; + license = stdenv.lib.licenses.mit; + platforms = stdenv.lib.platforms.unix; + maintainers = with stdenv.lib.maintainers; [ roconnor thoughtpolice ]; }; } diff --git a/pkgs/applications/science/logic/saw-tools/default.nix b/pkgs/applications/science/logic/saw-tools/default.nix new file mode 100644 index 000000000000..3231e2a7b806 --- /dev/null +++ b/pkgs/applications/science/logic/saw-tools/default.nix @@ -0,0 +1,61 @@ +{ stdenv, fetchurl, gmp4, ncurses, zlib, makeWrapper, clang_35 }: + +let + libPath = stdenv.lib.makeLibraryPath + [ stdenv.cc.libc + stdenv.cc.cc + gmp4 + ncurses + zlib + ] + ":${stdenv.cc.cc}/lib64"; + + url = "https://github.com/GaloisInc/saw-script/releases/download"; + + saw-bin = + if stdenv.system == "i686-linux" + then fetchurl { + url = url + "/v0.1-dev/saw-0.1-dev-2015-06-09-CentOS6-32.tar.gz"; + sha256 = "0hfb3a749fvwn33jnj1bgpk7v4pbvjjjffhafck6s8yz2sknnq4w"; + } + else fetchurl { + url = url + "/v0.1-dev/saw-0.1-dev-2015-06-09-CentOS6-64.tar.gz"; + sha256 = "1yz56kr8s0jcrfk1i87x63ngxip2i1s123arydnqq8myjyfz8id9"; + }; +in +stdenv.mkDerivation rec { + name = "saw-tools-${version}"; + version = "0.1-20150609"; + + src = saw-bin; + + installPhase = '' + mkdir -p $out/lib $out/share + + mv bin $out/bin + mv doc $out/share + + # Hack around lack of libtinfo in NixOS + ln -s ${ncurses}/lib/libncursesw.so.5 $out/lib/libtinfo.so.5 + ln -s ${stdenv.cc.libc}/lib/libpthread.so.0 $out/lib/libpthread.so.0 + + # Add a clang symlink for easy building with a suitable compiler. + ln -s ${clang_35}/bin/clang $out/bin/saw-clang + ''; + + fixupPhase = '' + for x in bin/bcdump bin/extcore-info bin/jss bin/llvm-disasm bin/lss bin/saw; do + patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ + --set-rpath "$out/lib:${libPath}" $out/$x; + done + ''; + + phases = "unpackPhase installPhase fixupPhase"; + + meta = { + description = "Tools for software verification and analysis"; + homepage = "https://saw.galois.com"; + license = stdenv.lib.licenses.unfreeRedistributable; + platforms = stdenv.lib.platforms.linux; + maintainers = [ stdenv.lib.maintainers.thoughtpolice ]; + }; +} diff --git a/pkgs/applications/science/logic/yices/default.nix b/pkgs/applications/science/logic/yices/default.nix index 4e3b9b2a76b1..5daaa444c127 100644 --- a/pkgs/applications/science/logic/yices/default.nix +++ b/pkgs/applications/science/logic/yices/default.nix @@ -1,36 +1,19 @@ -{ stdenv, fetchurl }: +{ stdenv, fetchurl, gmp, gperf, autoreconfHook }: -assert stdenv.isLinux; - -let - libPath = stdenv.lib.makeLibraryPath [ stdenv.cc.libc ]; -in stdenv.mkDerivation rec { name = "yices-${version}"; - version = "2.2.1"; - - src = - if stdenv.system == "i686-linux" - then fetchurl { - url = "http://yices.csl.sri.com/cgi-bin/yices2-newdownload.cgi?file=yices-2.2.1-i686-pc-linux-gnu-static-gmp.tar.gz&accept=I+accept"; - name = "yices-${version}-i686.tar.gz"; - sha256 = "12jzk3kqlbqa5x6rl92cpzj7dch7gm7fnbj72wifvwgdj4zyhrra"; - } - else fetchurl { - url = "http://yices.csl.sri.com/cgi-bin/yices2-newdownload.cgi?file=yices-2.2.1-x86_64-unknown-linux-gnu-static-gmp.tar.gz&accept=I+accept"; - name = "yices-${version}-x86_64.tar.gz"; - sha256 = "0fpmihf6ykcg4qbsimkamgcwp4sl1xyxmz7q28ily91rd905ijaj"; - }; + version = "2.3.1"; - buildPhase = false; - installPhase = '' - mkdir -p $out/bin $out/lib $out/include - cd bin && mv * $out/bin && cd .. - cd lib && mv * $out/lib && cd .. - cd include && mv * $out/include && cd .. + src = fetchurl { + url = "http://yices.csl.sri.com/cgi-bin/yices2-newnewdownload.cgi?file=yices-2.3.1-src.tar.gz&accept=I+Agree"; + name = "yices-${version}-src.tar.gz"; + sha256 = "1da70n0cah0dh3pk7fcrvjkszx9qmhc0csgl15jqa7bdh707k2zs"; + }; - patchelf --set-rpath ${libPath} $out/lib/libyices.so.${version} - ''; + configureFlags = [ "--with-static-gmp=${gmp}/lib/libgmp.a" + "--with-static-gmp-include-dir=${gmp}/include" + ]; + buildInputs = [ gmp gperf autoreconfHook ]; meta = { description = "A high-performance theorem prover and SMT solver"; diff --git a/pkgs/applications/science/logic/z3/default.nix b/pkgs/applications/science/logic/z3/default.nix index 2296a28444b4..fb3fb959ae63 100644 --- a/pkgs/applications/science/logic/z3/default.nix +++ b/pkgs/applications/science/logic/z3/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "z3-${version}"; - version = "4.3.2"; + version = "4.4.0"; src = fetchFromGitHub { owner = "Z3Prover"; repo = "z3"; - rev = "ac21ffebdf1512da2a77dc46c47bde87cc3850f3"; - sha256 = "1y86akhpy41wx3gx7r8gvf7xbax7dj36ikj6gqh5a7p6r6maz9ci"; + rev = "7f6ef0b6c0813f2e9e8f993d45722c0e5b99e152"; + sha256 = "1xllvq9fcj4cz34biq2a9dn2sj33bdgrzyzkj26hqw70wkzv1kzx"; }; buildInputs = [ python ]; diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index d0adb3382079..0f13faf7513e 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -1,22 +1,22 @@ -{ stdenv, fetchurl, blas, bzip2, gfortran, liblapack, libX11, libXmu, libXt +{ stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt , libjpeg, libpng, libtiff, ncurses, pango, pcre, perl, readline, tcl , texLive, tk, xz, zlib, less, texinfo, graphviz, icu, pkgconfig, bison -, imake, which, jdk, atlas +, imake, which, jdk, openblas , withRecommendedPackages ? true }: stdenv.mkDerivation rec { - name = "R-3.2.0"; + name = "R-3.2.1"; src = fetchurl { url = "http://cran.r-project.org/src/base/R-3/${name}.tar.gz"; - sha256 = "0dagyqgvi8i3nw158qi2zpwm04s4ffzvnmk5niaksvxs30zrbbpm"; + sha256 = "d59dbc3f04f4604a5cf0fb210b8ea703ef2438b3ee65fd5ab536ec5234f4c982"; }; - buildInputs = [ blas bzip2 gfortran liblapack libX11 libXmu libXt + buildInputs = [ bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses pango pcre perl readline tcl texLive tk xz zlib less texinfo graphviz icu pkgconfig bison imake - which jdk atlas + which jdk openblas ]; patches = [ ./no-usr-local-search-paths.patch ]; @@ -25,8 +25,8 @@ stdenv.mkDerivation rec { configureFlagsArray=( --disable-lto --with${stdenv.lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages - --with-blas="-L${atlas}/lib -lf77blas -latlas" - --with-lapack="-L${liblapack}/lib -llapack" + --with-blas="-L${openblas}/lib -lopenblas" + --with-lapack="-L${openblas}/lib -lopenblas" --with-readline --with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh" --with-cairo diff --git a/pkgs/applications/science/math/jags/default.nix b/pkgs/applications/science/math/jags/default.nix index 785c2460bb49..9d70d2686911 100644 --- a/pkgs/applications/science/math/jags/default.nix +++ b/pkgs/applications/science/math/jags/default.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl, gfortran, liblapack, blas}: +{stdenv, fetchurl, gfortran, openblas}: stdenv.mkDerivation rec { name = "JAGS-3.4.0"; @@ -6,7 +6,8 @@ stdenv.mkDerivation rec { url = "mirror://sourceforge/mcmc-jags/${name}.tar.gz"; sha256 = "0ayqsz9kkmbss7mxlwr34ch2z1vsb65lryjzqpprab1ccyiaksib"; }; - buildInputs = [gfortran liblapack blas]; + buildInputs = [gfortran openblas]; + configureFlags = [ "--with-blas=-lopenblas" "--with-lapack=-lopenblas" ]; meta = { description = "Just Another Gibbs Sampler"; diff --git a/pkgs/applications/science/misc/golly/default.nix b/pkgs/applications/science/misc/golly/default.nix index 63a0be47c474..bf6eabef909e 100644 --- a/pkgs/applications/science/misc/golly/default.nix +++ b/pkgs/applications/science/misc/golly/default.nix @@ -3,11 +3,11 @@ let s = # Generated upstream information rec { baseName="golly"; - version="2.6"; + version="2.7"; name="${baseName}-${version}"; - hash="1n1k3yf23ymlwq4k6p4v2g04qd29pg2rabr4l7m9bj2b2j1zkqhz"; - url="mirror://sourceforge/project/golly/golly/golly-2.6/golly-2.6-src.tar.gz"; - sha256="1n1k3yf23ymlwq4k6p4v2g04qd29pg2rabr4l7m9bj2b2j1zkqhz"; + hash="0wfr9dhdbwg2cbcl7g2s1h9pmsm1lkjncbs9m0df82bcw516xs2f"; + url="mirror://sourceforge/project/golly/golly/golly-2.7/golly-2.7-src.tar.gz"; + sha256="0wfr9dhdbwg2cbcl7g2s1h9pmsm1lkjncbs9m0df82bcw516xs2f"; }; buildInputs = [ wxGTK perl python zlib diff --git a/pkgs/applications/version-management/git-and-tools/git/default.nix b/pkgs/applications/version-management/git-and-tools/git/default.nix index 60bfaa861996..ee001917746f 100644 --- a/pkgs/applications/version-management/git-and-tools/git/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git/default.nix @@ -9,7 +9,7 @@ }: let - version = "2.4.1"; + version = "2.4.4"; svn = subversionClient.override { perlBindings = true; }; in @@ -18,7 +18,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://www.kernel.org/pub/software/scm/git/git-${version}.tar.xz"; - sha256 = "195d61f98jj53jq0w3kfphpyk51h7fylpahc558id79ccc4ii1bj"; + sha256 = "0q02ygsk1gvn07bb7gnwrp9kr2p405fjj8arpby7851889fv2wzq"; }; patches = [ diff --git a/pkgs/applications/version-management/mercurial/default.nix b/pkgs/applications/version-management/mercurial/default.nix index 2409e8e2240a..565c95af5081 100644 --- a/pkgs/applications/version-management/mercurial/default.nix +++ b/pkgs/applications/version-management/mercurial/default.nix @@ -51,6 +51,9 @@ stdenv.mkDerivation { mkdir -p $out/share/cgi-bin cp -v hgweb.cgi contrib/hgweb.wsgi $out/share/cgi-bin chmod u+x $out/share/cgi-bin/hgweb.cgi + + # install bash completion + install -D -v contrib/bash_completion $out/share/bash-completion/completions/mercurial ''; meta = { diff --git a/pkgs/applications/version-management/mr/default.nix b/pkgs/applications/version-management/mr/default.nix index d52802e42f1d..68bef621bc28 100644 --- a/pkgs/applications/version-management/mr/default.nix +++ b/pkgs/applications/version-management/mr/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, perl }: stdenv.mkDerivation rec { - version = "1.20141024"; + version = "1.20150503"; name = "mr-${version}"; src = fetchurl { url = "https://github.com/joeyh/myrepos/archive/${version}.tar.gz"; - sha256 = "7b68183476867d15d6f111fc9678335b94824dcfa09f07c761a72d64cdf5ad4a"; + sha256 = "12cf8kmn13446rszmah5wws5p2k2gjp6y4505sy1r14qnahf4qbf"; }; buildInputs = [ perl ]; diff --git a/pkgs/applications/video/dvd-slideshow/default.nix b/pkgs/applications/video/dvd-slideshow/default.nix new file mode 100644 index 000000000000..a6197c2e6e13 --- /dev/null +++ b/pkgs/applications/video/dvd-slideshow/default.nix @@ -0,0 +1,69 @@ +{ stdenv, fetchurl, writeScript, cdrtools, dvdauthor, ffmpeg, imagemagick, lame, mjpegtools, sox, transcode, vorbisTools }: + +let + wrapper = writeScript "dvd-slideshow.sh" '' + #!/bin/bash + # wrapper script for dvd-slideshow programs + export PATH=${cdrtools}/bin:${dvdauthor}/bin:${ffmpeg}/bin:${imagemagick}/bin:${lame}/bin:${mjpegtools}/bin:${sox}/bin:${transcode}/bin:${vorbisTools}/bin:$PATH + + dir=`dirname "$0"` + exe=`basename "$0"` + case "$exe" in + dvd-slideshow) + # use mpeg2enc by default as ffmpeg is known to crash. + # run dvd-slideshow.ffmpeg to force ffmpeg. + "$dir/dvd-slideshow.real" -mpeg2enc $@ + ;; + + dvd-slideshow.ffmpeg) + "$dir/dvd-slideshow.real" $@ + ;; + + *) + "$dir/$exe.real" $@ + ;; + esac + ''; + +in stdenv.mkDerivation rec { + name = "dvd-slideshow"; + version = "0.8.4-2"; + src = fetchurl { + url = "mirror://sourceforge/dvd-slideshow/files/${name}-${version}.tar.gz"; + sha256 = "17c09aqvippiji2sd0pcxjg3nb1mnh9k5nia4gn5lhcvngjcp1q5"; + }; + + patchPhase = '' + # fix upstream typos + substituteInPlace dvd-slideshow \ + --replace "version='0.8.4-1'" "version='0.8.4-2'" \ + --replace "mymyecho" "myecho" + ''; + + installPhase = '' + mkdir -p "$out/bin" + cp dvd-slideshow "$out/bin/dvd-slideshow.real" + cp dvd-menu "$out/bin/dvd-menu.real" + cp dir2slideshow "$out/bin/dir2slideshow.real" + cp gallery1-to-slideshow "$out/bin/gallery1-to-slideshow.real" + cp jigl2slideshow "$out/bin/jigl2slideshow.real" + + cp ${wrapper} "$out/bin/dvd-slideshow.sh" + ln -s dvd-slideshow.sh "$out/bin/dvd-slideshow" + ln -s dvd-slideshow.sh "$out/bin/dvd-slideshow.ffmpeg" + ln -s dvd-slideshow.sh "$out/bin/dvd-menu" + ln -s dvd-slideshow.sh "$out/bin/dir2slideshow" + ln -s dvd-slideshow.sh "$out/bin/gallery1-to-slideshow" + ln -s dvd-slideshow.sh "$out/bin/jigl2slideshow" + + cp -a man "$out/" + ''; + + meta = { + description = "Suite of command line programs that creates a slideshow-style video from groups of pictures"; + homepage = http://dvd-slideshow.sourceforge.net/wiki/Main_Page; + license = stdenv.lib.licenses.gpl2; + platforms = stdenv.lib.platforms.linux; + maintainers = [ stdenv.lib.maintainers.robbinch ]; + }; +} diff --git a/pkgs/applications/video/makemkv/default.nix b/pkgs/applications/video/makemkv/default.nix index 583c800a8b4a..7d604101f4b1 100644 --- a/pkgs/applications/video/makemkv/default.nix +++ b/pkgs/applications/video/makemkv/default.nix @@ -4,17 +4,17 @@ stdenv.mkDerivation rec { name = "makemkv-${ver}"; - ver = "1.9.2"; + ver = "1.9.4"; builder = ./builder.sh; src_bin = fetchurl { url = "http://www.makemkv.com/download/makemkv-bin-${ver}.tar.gz"; - sha256 = "0hjby7imja9sg2h68al81n4zl72mc3y3fqmf61sf1sad4njs9bkj"; + sha256 = "0xr5bfbpzd1s9fyxbwj0crpgi57hm4wrm1dybx13lv4n6xdj2ww0"; }; src_oss = fetchurl { url = "http://www.makemkv.com/download/makemkv-oss-${ver}.tar.gz"; - sha256 = "074scfz835jynzmb28i8q44hc6ixvfg3crgirmy02bbpxakyp1v6"; + sha256 = "0gpmyp2g44piaj47a52ik5i3sk5flbs8kqlqmjxnqkv16s01vfra"; }; buildInputs = [openssl qt4 mesa zlib pkgconfig libav]; diff --git a/pkgs/applications/window-managers/tabbed/default.nix b/pkgs/applications/window-managers/tabbed/default.nix index 4e6c9c9a83e6..a7e2059cd042 100644 --- a/pkgs/applications/window-managers/tabbed/default.nix +++ b/pkgs/applications/window-managers/tabbed/default.nix @@ -1,24 +1,25 @@ -{stdenv, fetchhg, xproto, libX11, patches ? []}: +{stdenv, fetchgit, xproto, libX11, enableXft, libXft}: + +with stdenv.lib; stdenv.mkDerivation rec { - name = "tabbed-20120209"; - - src = fetchhg { - url = http://hg.suckless.org/tabbed; - rev = "d7542a6f6dc5"; - sha256 = "1963jsazfmh5k7923c1mfwppz1xbh48z16j0sa64fiscq22as2gj"; + name = "tabbed-20150509"; + + src = fetchgit { + url = http://git.suckless.org/tabbed; + rev = "55dc32b27b73c121cab18009bf087e95ef3d9c18"; + sha256 = "0c5ayf1lrb1xiz5h8dfd4mh05kas42zzi5m5ylrvl67sfz3z4wg1"; }; - # Allow users set their own list of patches - inherit patches; + patches = optional enableXft ./xft.patch; - buildInputs = [ xproto libX11 ]; + buildInputs = [ xproto libX11 ] ++ optional enableXft libXft; preInstall = '' export makeFlags="PREFIX=$out" ''; - - meta = with stdenv.lib; { + + meta = { homepage = http://tools.suckless.org/tabbed; description = "Simple generic tabbed fronted to xembed aware applications"; license = licenses.mit; diff --git a/pkgs/applications/window-managers/tabbed/xft.patch b/pkgs/applications/window-managers/tabbed/xft.patch new file mode 100644 index 000000000000..f4f1e82e7052 --- /dev/null +++ b/pkgs/applications/window-managers/tabbed/xft.patch @@ -0,0 +1,234 @@ +diff --git a/config.def.h b/config.def.h +index b3da7f0..ce43686 100644 +--- a/config.def.h ++++ b/config.def.h +@@ -1,7 +1,7 @@ + /* See LICENSE file for copyright and license details. */ + + /* appearance */ +-static const char font[] = "-*-*-medium-*-*-*-14-*-*-*-*-*-*-*"; ++static const char font[] = "monospace-9"; + static const char* normbgcolor = "#222222"; + static const char* normfgcolor = "#cccccc"; + static const char* selbgcolor = "#555555"; +diff --git a/config.mk b/config.mk +index dd741e4..ed3a2e9 100644 +--- a/config.mk ++++ b/config.mk +@@ -9,7 +9,7 @@ MANPREFIX = ${PREFIX}/share/man + + # includes and libs + INCS = -I. -I/usr/include +-LIBS = -L/usr/lib -lc -lX11 ++LIBS = -L/usr/lib -lc -lXft -lX11 + + # flags + CPPFLAGS = -DVERSION=\"${VERSION}\" -D_DEFAULT_SOURCE +diff --git a/tabbed.c b/tabbed.c +index b15f9cb..6e50c41 100644 +--- a/tabbed.c ++++ b/tabbed.c +@@ -15,6 +15,7 @@ + #include <X11/Xproto.h> + #include <X11/Xutil.h> + #include <X11/XKBlib.h> ++#include <X11/Xft/Xft.h> + + #include "arg.h" + +@@ -64,17 +65,16 @@ typedef struct { + + typedef struct { + int x, y, w, h; +- unsigned long norm[ColLast]; +- unsigned long sel[ColLast]; +- unsigned long urg[ColLast]; ++ XftColor norm[ColLast]; ++ XftColor sel[ColLast]; ++ XftColor urg[ColLast]; + Drawable drawable; + GC gc; + struct { + int ascent; + int descent; + int height; +- XFontSet set; +- XFontStruct *xfont; ++ XftFont *xfont; + } font; + } DC; /* draw context */ + +@@ -97,7 +97,7 @@ static void unmapnotify(const XEvent *e); + static void destroynotify(const XEvent *e); + static void die(const char *errstr, ...); + static void drawbar(void); +-static void drawtext(const char *text, unsigned long col[ColLast]); ++static void drawtext(const char *text, XftColor col[ColLast]); + static void *ecalloc(size_t n, size_t size); + static void *erealloc(void *o, size_t size); + static void expose(const XEvent *e); +@@ -107,7 +107,7 @@ static void focusonce(const Arg *arg); + static void fullscreen(const Arg *arg); + static char* getatom(int a); + static int getclient(Window w); +-static unsigned long getcolor(const char *colstr); ++static XftColor getcolor(const char *colstr); + static int getfirsttab(void); + static Bool gettextprop(Window w, Atom atom, char *text, unsigned int size); + static void initfont(const char *fontstr); +@@ -220,12 +220,6 @@ cleanup(void) { + free(clients); + clients = NULL; + +- if(dc.font.set) { +- XFreeFontSet(dpy, dc.font.set); +- } else { +- XFreeFont(dpy, dc.font.xfont); +- } +- + XFreePixmap(dpy, dc.drawable); + XFreeGC(dpy, dc.gc); + XDestroyWindow(dpy, win); +@@ -315,7 +309,7 @@ die(const char *errstr, ...) { + + void + drawbar(void) { +- unsigned long *col; ++ XftColor *col; + int c, cc, fc, width; + char *name = NULL; + +@@ -368,12 +362,13 @@ drawbar(void) { + } + + void +-drawtext(const char *text, unsigned long col[ColLast]) { ++drawtext(const char *text, XftColor col[ColLast]) { + int i, x, y, h, len, olen; + char buf[256]; ++ XftDraw *d; + XRectangle r = { dc.x, dc.y, dc.w, dc.h }; + +- XSetForeground(dpy, dc.gc, col[ColBG]); ++ XSetForeground(dpy, dc.gc, col[ColBG].pixel); + XFillRectangles(dpy, dc.drawable, dc.gc, &r, 1); + if(!text) + return; +@@ -394,13 +389,12 @@ drawtext(const char *text, unsigned long col[ColLast]) { + for(i = len; i && i > len - 3; buf[--i] = '.'); + } + +- XSetForeground(dpy, dc.gc, col[ColFG]); +- if(dc.font.set) { +- XmbDrawString(dpy, dc.drawable, dc.font.set, +- dc.gc, x, y, buf, len); +- } else { +- XDrawString(dpy, dc.drawable, dc.gc, x, y, buf, len); +- } ++ XSetForeground(dpy, dc.gc, col[ColFG].pixel); ++ ++ d = XftDrawCreate(dpy, dc.drawable, DefaultVisual(dpy, screen), DefaultColormap(dpy,screen)); ++ ++ XftDrawStringUtf8(d, &col[ColFG], dc.font.xfont, x, y, (XftChar8 *) buf, len); ++ XftDrawDestroy(d); + } + + void * +@@ -537,15 +531,14 @@ getclient(Window w) { + return -1; + } + +-unsigned long ++XftColor + getcolor(const char *colstr) { +- Colormap cmap = DefaultColormap(dpy, screen); +- XColor color; ++ XftColor color; + +- if(!XAllocNamedColor(dpy, cmap, colstr, &color, &color)) ++ if(!XftColorAllocName(dpy, DefaultVisual(dpy, screen), DefaultColormap(dpy, screen), colstr, &color)) + die("tabbed: cannot allocate color '%s'\n", colstr); + +- return color.pixel; ++ return color; + } + + int +@@ -594,41 +587,11 @@ gettextprop(Window w, Atom atom, char *text, unsigned int size) { + + void + initfont(const char *fontstr) { +- char *def, **missing, **font_names; +- int i, n; +- XFontStruct **xfonts; +- +- missing = NULL; +- if(dc.font.set) +- XFreeFontSet(dpy, dc.font.set); +- +- dc.font.set = XCreateFontSet(dpy, fontstr, &missing, &n, &def); +- if(missing) { +- while(n--) +- fprintf(stderr, "tabbed: missing fontset: %s\n", missing[n]); +- XFreeStringList(missing); +- } +- +- if(dc.font.set) { +- dc.font.ascent = dc.font.descent = 0; +- n = XFontsOfFontSet(dc.font.set, &xfonts, &font_names); +- for(i = 0, dc.font.ascent = 0, dc.font.descent = 0; i < n; i++) { +- dc.font.ascent = MAX(dc.font.ascent, (*xfonts)->ascent); +- dc.font.descent = MAX(dc.font.descent,(*xfonts)->descent); +- xfonts++; +- } +- } else { +- if(dc.font.xfont) +- XFreeFont(dpy, dc.font.xfont); +- dc.font.xfont = NULL; +- if(!(dc.font.xfont = XLoadQueryFont(dpy, fontstr)) +- && !(dc.font.xfont = XLoadQueryFont(dpy, "fixed"))) { +- die("tabbed: cannot load font: '%s'\n", fontstr); +- } ++ if(!(dc.font.xfont = XftFontOpenName(dpy,screen,fontstr)) && !(dc.font.xfont = XftFontOpenName(dpy,screen,"fixed"))) ++ die("error, cannot load font: '%s'\n", fontstr); + +- dc.font.ascent = dc.font.xfont->ascent; +- dc.font.descent = dc.font.xfont->descent; +- } ++ dc.font.ascent = dc.font.xfont->ascent; ++ dc.font.descent = dc.font.xfont->descent; + dc.font.height = dc.font.ascent + dc.font.descent; + } + +@@ -1000,11 +963,9 @@ setup(void) { + dc.drawable = XCreatePixmap(dpy, root, ww, wh, + DefaultDepth(dpy, screen)); + dc.gc = XCreateGC(dpy, root, 0, 0); +- if(!dc.font.set) +- XSetFont(dpy, dc.gc, dc.font.xfont->fid); + + win = XCreateSimpleWindow(dpy, root, wx, wy, ww, wh, 0, +- dc.norm[ColFG], dc.norm[ColBG]); ++ dc.norm[ColFG].pixel, dc.norm[ColBG].pixel); + XMapRaised(dpy, win); + XSelectInput(dpy, win, SubstructureNotifyMask|FocusChangeMask| + ButtonPressMask|ExposureMask|KeyPressMask|PropertyChangeMask| +@@ -1070,15 +1031,9 @@ spawn(const Arg *arg) { + + int + textnw(const char *text, unsigned int len) { +- XRectangle r; +- +- if(dc.font.set) { +- XmbTextExtents(dc.font.set, text, len, NULL, &r); +- +- return r.width; +- } +- +- return XTextWidth(dc.font.xfont, text, len); ++ XGlyphInfo ext; ++ XftTextExtentsUtf8(dpy, dc.font.xfont, (XftChar8 *) text, len, &ext); ++ return ext.xOff; + } + + void diff --git a/pkgs/build-support/fetchnuget/default.nix b/pkgs/build-support/fetchnuget/default.nix index 803db27c9d56..95bb7b7cd8da 100644 --- a/pkgs/build-support/fetchnuget/default.nix +++ b/pkgs/build-support/fetchnuget/default.nix @@ -18,7 +18,7 @@ attrs @ buildInputs = [ unzip ]; - phases = [ "unpackPhase" "installPhase" ]; + dontBuild = true; preInstall = '' function traverseRename () { diff --git a/pkgs/build-support/fetchurl/mirrors.nix b/pkgs/build-support/fetchurl/mirrors.nix index 7f61ddc77db1..1f5e92da88a1 100644 --- a/pkgs/build-support/fetchurl/mirrors.nix +++ b/pkgs/build-support/fetchurl/mirrors.nix @@ -14,8 +14,6 @@ rec { http://heanet.dl.sourceforge.net/sourceforge/ http://surfnet.dl.sourceforge.net/sourceforge/ http://dfn.dl.sourceforge.net/sourceforge/ - http://mesh.dl.sourceforge.net/sourceforge/ - http://ovh.dl.sourceforge.net/sourceforge/ http://osdn.dl.sourceforge.net/sourceforge/ http://kent.dl.sourceforge.net/sourceforge/ ]; @@ -153,10 +151,9 @@ rec { # ImageMagick mirrors, see http://www.imagemagick.org/script/download.php. imagemagick = [ - ftp://ftp.nluug.nl/pub/ImageMagick/ + http://www.imagemagick.org/download/ + ftp://ftp.sunet.se/pub/multimedia/graphics/ImageMagick/ # also contains older versions removed from most mirrors ftp://ftp.imagemagick.org/pub/ImageMagick/ - ftp://ftp.imagemagick.net/pub/ImageMagick/ - ftp://ftp.sunet.se/pub/multimedia/graphics/ImageMagick/ ]; # CPAN mirrors. @@ -292,6 +289,21 @@ rec { ftp://ftp.xemacs.org/sites/metalab.unc.edu/ ]; + # Bioconductor mirrors (from http://bioconductor.org/about/mirrors) + # The commented-out ones don't seem to allow direct package downloads; + # they serve error messages that result in hash mismatches instead. + bioc = [ + # http://bioc.ism.ac.jp/3.2/bioc/ + # http://bioc.openanalytics.eu/3.2/bioc/ + # http://bioconductor.fmrp.usp.br/3.2/bioc/ + # http://mirror.aarnet.edu.au/pub/bioconductor/3.2/bioc/ + # http://watson.nci.nih.gov/bioc_mirror/3.2/bioc/ + http://bioconductor.jp/packages/3.2/bioc/ + http://bioconductor.statistik.tu-dortmund.de/packages/3.2/bioc/ + http://mirrors.ebi.ac.uk/bioconductor/packages/3.2/bioc/ + http://mirrors.ustc.edu.cn/bioc/3.2/bioc/ + ]; + # CRAN mirrors (from http://cran.r-project.org/mirrors.html) cran = [ http://cran.r-project.org/ @@ -339,7 +351,6 @@ rec { http://cran.hafro.is/ http://ftp.iitm.ac.in/cran/ http://cran.repo.bppt.go.id/ - http://cran.unej.ac.id/ http://cran.um.ac.ir/ http://ftp.heanet.ie/mirrors/cran.r-project.org/ http://cran.mirror.garr.it/mirrors/CRAN/ diff --git a/pkgs/build-support/make-desktopitem/default.nix b/pkgs/build-support/make-desktopitem/default.nix index c7f2aea23393..1a03faae54cc 100644 --- a/pkgs/build-support/make-desktopitem/default.nix +++ b/pkgs/build-support/make-desktopitem/default.nix @@ -9,7 +9,6 @@ , genericName , mimeType ? "" , categories ? "Application;Other;" -, encoding ? "UTF-8" }: stdenv.mkDerivation { @@ -27,7 +26,6 @@ stdenv.mkDerivation { GenericName=${genericName} MimeType=${mimeType} Categories=${categories} - Encoding=${encoding} EOF ''; } diff --git a/pkgs/build-support/vm/default.nix b/pkgs/build-support/vm/default.nix index 53a013654357..c4fefe4d5019 100644 --- a/pkgs/build-support/vm/default.nix +++ b/pkgs/build-support/vm/default.nix @@ -1710,22 +1710,22 @@ rec { }; debian8i386 = { - name = "debian-8.0-jessie-i386"; - fullName = "Debian 8.0 Jessie (i386)"; + name = "debian-8.1-jessie-i386"; + fullName = "Debian 8.1 Jessie (i386)"; packagesList = fetchurl { url = mirror://debian/dists/jessie/main/binary-i386/Packages.xz; - sha256 = "0lrv1lnd595c346ci7z8ja2b0rm2gx5r4hwp0wbp9lzxi8k5nk1d"; + sha256 = "e658c2aebc3c0bc529e89de3ad916a71372f0a80161111d86a7dab1026644507"; }; urlPrefix = mirror://debian; packages = commonDebianPackages; }; debian8x86_64 = { - name = "debian-8.0-jessie-amd64"; - fullName = "Debian 8.0 Jessie (amd64)"; + name = "debian-8.1-jessie-amd64"; + fullName = "Debian 8.1 Jessie (amd64)"; packagesList = fetchurl { url = mirror://debian/dists/jessie/main/binary-amd64/Packages.xz; - sha256 = "0hhagvybciy89wr1cy9dgdfki668dvcywgbz4w01qwivyd6dsia4"; + sha256 = "265907f3cb05aff5f653907e9babd4704902f78cd5e355d4cd4ae590e4d5b043"; }; urlPrefix = mirror://debian; packages = commonDebianPackages; diff --git a/pkgs/data/fonts/andagii/default.nix b/pkgs/data/fonts/andagii/default.nix index 8143d2841206..562aa8be4eff 100644 --- a/pkgs/data/fonts/andagii/default.nix +++ b/pkgs/data/fonts/andagii/default.nix @@ -1,59 +1,31 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - url="http://www.i18nguy.com/unicode/andagii.zip"; - name="andagii"; - version="1.0.2"; - hash="0cknb8vin15akz4ahpyayrpqyaygp9dgrx6qw7zs7d6iv9v59ds1"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; +stdenv.mkDerivation rec { + name = "andagii-${version}"; + version = "1.0.2"; + + src = fetchzip { + url = http://www.i18nguy.com/unicode/andagii.zip; + sha256 = "0a0c43y1fd5ksj50axhng7p00kgga0i15p136g68p35wj7kh5g2k"; + stripRoot = false; curlOpts = "--user-agent 'Mozilla/5.0'"; - sha256 = sourceInfo.hash; }; - name = "${sourceInfo.name}-${sourceInfo.version}"; - inherit buildInputs; - - /* doConfigure should be removed if not needed */ - phaseNames = ["doUnpack" "doInstall"]; + phases = [ "unpackPhase" "installPhase" ]; - doUnpack = a.fullDepEntry '' - unzip "${src}" - '' ["addInputs"]; + installPhase = '' + mkdir -p $out/share/fonts/truetype + cp -v ANDAGII_.TTF $out/share/fonts/truetype/andagii.ttf + ''; - doInstall = a.fullDepEntry ('' - mkdir -p "$out"/share/fonts/ttf/ - cp ANDAGII_.TTF "$out"/share/fonts/ttf/andagii.ttf - '') ["defEnsureDir" "minInit"]; - - meta = { + # There are multiple claims that the font is GPL, so I include the + # package; but I cannot find the original source, so use it on your + # own risk Debian claims it is GPL - good enough for me. + meta = with stdenv.lib; { + homepage = http://www.i18nguy.com/unicode/unicode-font.HTML; description = "Unicode Plane 1 Osmanya script font"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - hydraPlatforms = []; - # There are multiple claims that the font is GPL, - # so I include the package; but I cannot find the - # original source, so use it on your own risk - # Debian claims it is GPL - good enough for me. + maintainers = with maintainers; [ raskin rycee ]; + license = "unknown"; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.i18nguy.com/unicode/unicode-font.html"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/anonymous-pro/default.nix b/pkgs/data/fonts/anonymous-pro/default.nix index 5b51ee36c5c7..da34a2f43aa6 100644 --- a/pkgs/data/fonts/anonymous-pro/default.nix +++ b/pkgs/data/fonts/anonymous-pro/default.nix @@ -1,50 +1,36 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchurl, unzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version = "1.002"; - name="anonymousPro"; - url="http://www.ms-studio.com/FontSales/AnonymousPro-${version}.zip"; +stdenv.mkDerivation rec { + name = "anonymousPro-${version}"; + version = "1.002"; + + src = fetchurl { + url = "http://www.marksimonson.com/assets/content/fonts/AnonymousPro-${version}.zip"; sha256 = "1asj6lykvxh46czbal7ymy2k861zlcdqpz8x3s5bbpqwlm3mhrl6"; }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.sha256; - }; - name = "${sourceInfo.name}-${sourceInfo.version}"; - inherit buildInputs; + nativeBuildInputs = [ unzip ]; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/truetype + mkdir -p $out/share/doc/${name} + find . -name "*.ttf" -exec cp -v {} $out/share/fonts/truetype \; + find . -name "*.txt" -exec cp -v {} $out/share/doc/${name} \; + ''; - doUnpack = a.fullDepEntry ('' - unzip ${src} - cd AnonymousPro*/ - '') ["addInputs"]; - - meta = { + meta = with stdenv.lib; { + homepage = http://www.marksimonson.com/fonts/view/anonymous-pro; description = "TrueType font set intended for source code"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; - license = with a.lib.licenses; ofl; - hydraPlatforms = []; - homepage = "http://www.marksimonson.com/fonts/view/anonymous-pro"; - downloadPage = "http://www.ms-studio.com/FontSales/anonymouspro.html"; - inherit (sourceInfo) version; + longDescription = '' + Anonymous Pro (2009) is a family of four fixed-width fonts + designed with coding in mind. Anonymous Pro features an + international, Unicode-based character set, with support for + most Western and Central European Latin-based languages, plus + Greek and Cyrillic. It is designed by Mark Simonson. + ''; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; -}) x - +} diff --git a/pkgs/data/fonts/cm-unicode/default.nix b/pkgs/data/fonts/cm-unicode/default.nix index d8f6f7f83517..ed7ce93e1896 100644 --- a/pkgs/data/fonts/cm-unicode/default.nix +++ b/pkgs/data/fonts/cm-unicode/default.nix @@ -1,40 +1,28 @@ -x@{builderDefsPackage - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchurl }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version = "0.7.0"; - baseName="cm-unicode"; - name="${baseName}-${version}"; - url="mirror://sourceforge/${baseName}/${baseName}/${version}/${name}-otf.tar.xz"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; +stdenv.mkDerivation rec { + name = "cm-unicode-${version}"; + version = "0.7.0"; + + src = fetchurl { + url = "mirror://sourceforge/cm-unicode/cm-unicode/${version}/${name}-otf.tar.xz"; sha256 = "0a0w9qm9g8qz2xh3lr61bj1ymqslqsvk4w2ybc3v2qa89nz7x2jl"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + cp -v *.otf $out/share/fonts/opentype/ + cp -v README FontLog.txt $out/share/doc/${name} + ''; - meta = { - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; - downloadPage = "http://sourceforge.net/projects/cm-unicode/files/cm-unicode/"; - inherit version; + meta = with stdenv.lib; { + homepage = http://canopus.iacp.dvo.ru/~panov/cm-unicode/; + description = "Computer Modern Unicode fonts"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; -}) x - +} diff --git a/pkgs/data/fonts/eb-garamond/default.nix b/pkgs/data/fonts/eb-garamond/default.nix index 99c9b53217e5..0956250e36ce 100644 --- a/pkgs/data/fonts/eb-garamond/default.nix +++ b/pkgs/data/fonts/eb-garamond/default.nix @@ -1,50 +1,28 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="0.016"; - name="EBGaramond"; - url="https://bitbucket.org/georgd/eb-garamond/downloads/${name}-${version}.zip"; - hash="0y630khn5zh70al3mm84fs767ac94ffyz1w70zzhrhambx07pdx0"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; - }; +stdenv.mkDerivation rec { + name = "eb-garamond-${version}"; + version = "0.016"; - name = "eb-garamond-${sourceInfo.version}"; - inherit buildInputs; + src = fetchzip { + url = "https://bitbucket.org/georgd/eb-garamond/downloads/EBGaramond-${version}.zip"; + sha256 = "0j40bg1di39q7zis64il67xchldyznrl8wij9il10c4wr8nl4r9z"; + }; - phaseNames = ["doUnpack" "installFonts"]; + phases = [ "unpackPhase" "installPhase" ]; - # This will clean up if/when 8263996 lands. - doUnpack = a.fullDepEntry ('' - unzip ${src} - cd ${sourceInfo.name}* - mv {ttf,otf}/* . - '') ["addInputs"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + cp -v "otf/"*.otf $out/share/fonts/opentype/ + cp -v Changes README.markdown README.xelualatex $out/share/doc/${name} + ''; - meta = with a.lib; { + meta = with stdenv.lib; { + homepage = http://www.georgduffner.at/ebgaramond/; description = "Digitization of the Garamond shown on the Egenolff-Berner specimen"; - maintainers = with maintainers; [ relrod ]; - platforms = platforms.all; + maintainers = with maintainers; [ relrod rycee ]; license = licenses.ofl; - homepage = http://www.georgduffner.at/ebgaramond/; - }; - passthru = { - updateInfo = { - downloadPage = "https://github.com/georgd/EB-Garamond/releases"; - }; + platforms = platforms.all; }; -}) x - +} diff --git a/pkgs/data/fonts/fira-mono/default.nix b/pkgs/data/fonts/fira-mono/default.nix index 92d6b1e25b5c..a01f2a624249 100644 --- a/pkgs/data/fonts/fira-mono/default.nix +++ b/pkgs/data/fonts/fira-mono/default.nix @@ -1,16 +1,16 @@ { stdenv, fetchurl, unzip }: stdenv.mkDerivation rec { - name = "fira-mono-3.2"; + name = "fira-mono-3.203"; src = fetchurl { - url = http://www.carrois.com/downloads/fira_mono_3_2/FiraMonoFonts3200.zip; - sha256 = "0g3i54q8czf3vylgasj62w2n7l1a2yrbyibjlx1qk3awh7fr1r7p"; + url = http://www.carrois.com/downloads/fira_mono_3_2/FiraMonoFonts3203.zip; + sha256 = "0qaplpmsqys42a49x8d15ca2gqw1v6a6k2d56ja1j38dmr2qmpv4"; }; buildInputs = [ unzip ]; phases = [ "unpackPhase" "installPhase" ]; - sourceRoot = "FiraMonoFonts3200"; + sourceRoot = "FiraMonoFonts3203"; installPhase = '' mkdir -p $out/share/fonts/opentype diff --git a/pkgs/data/fonts/fira/default.nix b/pkgs/data/fonts/fira/default.nix index 151c945ee9e6..6646fcb86b18 100644 --- a/pkgs/data/fonts/fira/default.nix +++ b/pkgs/data/fonts/fira/default.nix @@ -1,16 +1,16 @@ { stdenv, fetchurl, unzip }: stdenv.mkDerivation rec { - name = "fira-4.1"; + name = "fira-4.103"; src = fetchurl { - url = "http://www.carrois.com/downloads/fira_4_1/FiraFonts4100.zip"; - sha256 = "0mqmmq1m2p0hb0x4mr74gghqr75iglilah7psfb3vdc80fc9h6yk"; + url = http://www.carrois.com/downloads/fira_4_1/FiraFonts4103.zip; + sha256 = "1nw5icg3134qq2qfspvj2kclsv3965szby2lfcr65imf7lj4k52z"; }; buildInputs = [unzip]; phases = [ "unpackPhase" "installPhase" ]; - sourceRoot = "FiraFonts4100"; + sourceRoot = "FiraFonts4103"; installPhase = '' mkdir -p $out/share/fonts/opentype diff --git a/pkgs/data/fonts/gentium/default.nix b/pkgs/data/fonts/gentium/default.nix index a4e8099db963..d0af6ce0eb01 100644 --- a/pkgs/data/fonts/gentium/default.nix +++ b/pkgs/data/fonts/gentium/default.nix @@ -1,46 +1,29 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="1.504"; - baseName="GentiumPlus"; - name="${baseName}-${version}"; - url="http://scripts.sil.org/cms/scripts/render_download.php?&format=file&media_id=${name}.zip&filename=${name}"; - hash="04kslaqbscpfrc6igkifcv1nkrclrm35hqpapjhw9102wpq12fpr"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; - name = "${sourceInfo.name}.zip"; +stdenv.mkDerivation rec { + name = "gentium-${version}"; + version = "1.504"; + + src = fetchzip { + name = "${name}.zip"; + url = "http://scripts.sil.org/cms/scripts/render_download.php?format=file&media_id=GentiumPlus-${version}.zip&filename=${name}.zip"; + sha256 = "1xdx80dfal0b8rkrp1janybx2hki7algnvkx4hyghgikpjcjkdh7"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["addInputs" "doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/truetype + mkdir -p $out/share/doc/${name} + cp -v *.ttf $out/share/fonts/truetype/ + cp -v FONTLOG.txt GENTIUM-FAQ.txt README.txt $out/share/doc/${name} + ''; - meta = { - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + meta = with stdenv.lib; { + homepage = "http://scripts.sil.org/cms/scripts/page.php?site_id=nrsi&item_id=Gentium"; + description = "A high-quality typeface family for Latin, Cyrillic, and Greek"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://scripts.sil.org/cms/scripts/page.php?item_id=Gentium_download"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/inconsolata/default.nix b/pkgs/data/fonts/inconsolata/default.nix index 887f37c241b6..caa67256a1fe 100644 --- a/pkgs/data/fonts/inconsolata/default.nix +++ b/pkgs/data/fonts/inconsolata/default.nix @@ -1,51 +1,26 @@ -x@{builderDefsPackage - , fontforge - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchurl }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - name="inconsolata"; - url="http://www.levien.com/type/myfonts/Inconsolata.sfd"; - hash="1cd29c8396adb18bfeddb1abf5bdb98b677649bb9b09f126d1335b123a4cfddb"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; - }; +stdenv.mkDerivation rec { + name = "inconsolata-${version}"; + version = "1.010"; - inherit (sourceInfo) name; - inherit buildInputs; + src = fetchurl { + url = "http://www.levien.com/type/myfonts/Inconsolata.otf"; + sha256 = "06js6znbcf7swn8y3b8ki416bz96ay7d3yvddqnvi88lqhbfcq8m"; + }; - /* doConfigure should be removed if not needed */ - phaseNames = ["copySrc" "generateFontsFromSFD" "installFonts"]; - - copySrc = a.fullDepEntry ('' - cp ${src} inconsolata.sfd - '') ["minInit"]; + phases = [ "installPhase" ]; - generateFontsFromSFD = a.generateFontsFromSFD // {deps=["addInputs"];}; + installPhase = '' + mkdir -p $out/share/fonts/opentype + cp -v $src $out/share/fonts/opentype/inconsolata.otf + ''; - meta = { + meta = with stdenv.lib; { + homepage = http://www.levien.com/type/myfonts/inconsolata.html; description = "A monospace font for both screen and print"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.levien.com/type/myfonts/inconsolata.html"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/oldstandard/default.nix b/pkgs/data/fonts/oldstandard/default.nix index ad25ac7fd954..125a4b636a99 100644 --- a/pkgs/data/fonts/oldstandard/default.nix +++ b/pkgs/data/fonts/oldstandard/default.nix @@ -1,50 +1,29 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="2.2"; - baseName="oldstandard"; - name="${baseName}-${version}"; - url="http://www.thessalonica.org.ru/downloads/${name}.otf.zip"; - hash="0xhbksrh9mv1cs6dl2mc8l6sypialy9wirkjr54nf7s9bcynv1h6"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; +stdenv.mkDerivation rec { + name = "oldstandard-${version}"; + version = "2.2"; + + src = fetchzip { + stripRoot = false; + url = "https://github.com/akryukov/oldstand/releases/download/v${version}/${name}.otf.zip"; + sha256 = "1hl78jw5szdjq9dhbcv2ln75wpp2lzcxrnfc36z35v5wk4l7jc3h"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + cp -v *.otf $out/share/fonts/opentype/ + cp -v FONTLOG.txt $out/share/doc/${name} + ''; - doUnpack = a.fullDepEntry '' - unzip ${src} - '' ["addInputs"]; - - meta = { - description = "An old-style font"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + meta = with stdenv.lib; { + homepage = https://github.com/akryukov/oldstand; + description = "An attempt to revive a specific type of Modern style of serif typefaces"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.thessalonica.org.ru/ru/fonts-download.html"; - }; - }; -}) x - +} diff --git a/pkgs/data/fonts/theano/default.nix b/pkgs/data/fonts/theano/default.nix index ca560c72a8ec..c385c3d40a92 100644 --- a/pkgs/data/fonts/theano/default.nix +++ b/pkgs/data/fonts/theano/default.nix @@ -1,50 +1,29 @@ -x@{builderDefsPackage - , unzip - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; +{ stdenv, fetchzip }: - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - version="2.0"; - baseName="theano"; - name="${baseName}-${version}"; - url="http://www.thessalonica.org.ru/downloads/${name}.otf.zip"; - hash="1xiykqbbiawvfk33639awmgdn25b8s2k7vpwncl17bzlk887b4z6"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.hash; +stdenv.mkDerivation rec { + name = "theano-${version}"; + version = "2.0"; + + src = fetchzip { + stripRoot = false; + url = "https://github.com/akryukov/theano/releases/download/v${version}/theano-${version}.otf.zip"; + sha256 = "1z3c63rcp4vfjyfv8xwc3br10ydwjyac3ipbl09y01s7qhfz02gp"; }; - inherit (sourceInfo) name version; - inherit buildInputs; + phases = [ "unpackPhase" "installPhase" ]; - phaseNames = ["doUnpack" "installFonts"]; + installPhase = '' + mkdir -p $out/share/fonts/opentype + mkdir -p $out/share/doc/${name} + find . -name "*.otf" -exec cp -v {} $out/share/fonts/opentype \; + find . -name "*.txt" -exec cp -v {} $out/share/doc/${name} \; + ''; - doUnpack = a.fullDepEntry '' - unzip ${src} - '' ["addInputs"]; - - meta = { - description = "An old-style font"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - all; + meta = with stdenv.lib; { + homepage = https://github.com/akryukov/theano; + description = "An old-style font designed from historic samples"; + maintainers = with maintainers; [ raskin rycee ]; + license = licenses.ofl; + platforms = platforms.all; }; - passthru = { - updateInfo = { - downloadPage = "http://www.thessalonica.org.ru/ru/fonts-download.html"; - }; - }; -}) x - +} diff --git a/pkgs/data/misc/geolite-legacy/default.nix b/pkgs/data/misc/geolite-legacy/default.nix index a34c10630aad..b6cc2a25266f 100644 --- a/pkgs/data/misc/geolite-legacy/default.nix +++ b/pkgs/data/misc/geolite-legacy/default.nix @@ -8,7 +8,7 @@ let # Annoyingly, these files are updated without a change in URL. This means that # builds will start failing every month or so, until the hashes are updated. - version = "2015-06-03"; + version = "2015-06-15"; in stdenv.mkDerivation { name = "geolite-legacy-${version}"; @@ -22,7 +22,7 @@ stdenv.mkDerivation { srcGeoLiteCityv6 = fetchDB "GeoLiteCityv6-beta/GeoLiteCityv6.dat.gz" "0xjzg76vdsayxyy1yyw64w781vad4c9nbhw61slh2qmazdr360g9"; srcGeoIPASNum = fetchDB "asnum/GeoIPASNum.dat.gz" - "0zccfd1wsny3n1f3wgkb071pp6z01nmk0p6nngha0gwnywchvbx4"; + "18kxswr0b5klimfpj1zhxipvyvrljvcywic4jc1ggcr44lf4hj9w"; srcGeoIPASNumv6 = fetchDB "asnum/GeoIPASNumv6.dat.gz" "0asnmmirridiy57zm0kccb7g8h7ndliswfv3yfk7zm7dk98njnxs"; diff --git a/pkgs/data/misc/nixos-artwork/default.nix b/pkgs/data/misc/nixos-artwork/default.nix index 99f3e8b1177b..b35a96fff82f 100644 --- a/pkgs/data/misc/nixos-artwork/default.nix +++ b/pkgs/data/misc/nixos-artwork/default.nix @@ -1,24 +1,23 @@ -{ stdenv, fetchFromGitHub }: +{ stdenv, fetchurl }: stdenv.mkDerivation { name = "nixos-artwork-2015-02-27"; # Remember to check the default lightdm wallpaper when updating - src = fetchFromGitHub { - owner = "NixOS"; - repo = "nixos-artwork"; - rev = "e71b6846023919136795ede22b16d73b2cf1693d"; - sha256 = "167yvhm2qy7qgyrqqs4hv98mmlarhgxpcsyv0r8a9g3vkblfdczb"; + GnomeDark = fetchurl { + url = https://raw.githubusercontent.com/NixOS/nixos-artwork/7ece5356398db14b5513392be4b31f8aedbb85a2/gnome/Gnome_Dark.png; + sha256 = "0c7sl9k4zdjwvdz3nhlm8i4qv4cjr0qagalaa1a438jigixx27l7"; }; + unpackPhase = "true"; + installPhase = '' - mkdir -p $out/share/artwork - cp -r * $out/share/artwork - find $out -name \*.xcf -exec rm {} \; + mkdir -p $out/share/artwork/gnome + ln -s $GnomeDark $out/share/artwork/gnome/Gnome_Dark.png ''; meta = with stdenv.lib; { - homepage = "https://github.com/NixOS/nixos-artwork"; + homepage = https://github.com/NixOS/nixos-artwork; platforms = platforms.all; }; } diff --git a/pkgs/data/misc/tzdata/default.nix b/pkgs/data/misc/tzdata/default.nix index 0ed99bfdb163..6d10fe68a099 100644 --- a/pkgs/data/misc/tzdata/default.nix +++ b/pkgs/data/misc/tzdata/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl }: -let version = "2015d"; in +let version = "2015e"; in stdenv.mkDerivation rec { name = "tzdata-${version}"; @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { srcs = [ (fetchurl { url = "http://www.iana.org/time-zones/repository/releases/tzdata${version}.tar.gz"; - sha256 = "0cfmjvr753b3wjnr1njv268xcs31yl9pifkxx58y42bz4w4517wb"; + sha256 = "0vxs6j1i429vxz4a1lbwjz81k236lxdggqvrlix2ga5xib9vbjgz"; }) (fetchurl { url = "http://www.iana.org/time-zones/repository/releases/tzcode${version}.tar.gz"; - sha256 = "0a3i65b6lracfx18s8j69k0x30x8aq9gx7qm040sybn4qm7ga6i2"; + sha256 = "185db6789kygcpcl48y1dh6m4fkgqcwqjwx7f3s5dys7b2sig8mm"; }) ]; diff --git a/pkgs/desktops/e19/efl.nix b/pkgs/desktops/e19/efl.nix index 6fb262ac50ac..7c2e0c3e378b 100644 --- a/pkgs/desktops/e19/efl.nix +++ b/pkgs/desktops/e19/efl.nix @@ -3,10 +3,10 @@ stdenv.mkDerivation rec { name = "efl-${version}"; - version = "1.14.0"; + version = "1.14.1"; src = fetchurl { url = "http://download.enlightenment.org/rel/libs/efl/${name}.tar.gz"; - sha256 = "0sb2104b2rayr2ag0n3g8zqds9nxd53mlyvq7650c3cy8hws5a1h"; + sha256 = "16rj4qnpw1ya0bsp9a69w6zjmmhzni7vnc0z4wg819jg5k2njzjf"; }; buildInputs = [ pkgconfig openssl zlib freetype fontconfig fribidi SDL2 SDL mesa diff --git a/pkgs/desktops/e19/elementary.nix b/pkgs/desktops/e19/elementary.nix index 30d0761c99ec..15bdc08b6d3f 100644 --- a/pkgs/desktops/e19/elementary.nix +++ b/pkgs/desktops/e19/elementary.nix @@ -1,10 +1,10 @@ { stdenv, fetchurl, pkgconfig, e19, libcap, automake114x, autoconf, libdrm, gdbm }: stdenv.mkDerivation rec { name = "elementary-${version}"; - version = "1.14.0"; + version = "1.14.1"; src = fetchurl { url = "http://download.enlightenment.org/rel/libs/elementary/${name}.tar.gz"; - sha256 = "03h9sv5c3473wxf7hcimdf80d2phxl81yv0kzngx4g1b6cdwl1ma"; + sha256 = "100bfzw6q57dnzcqg4zm0rqpvkk7zykfklnn6kcymv80j43xg0p1"; }; buildInputs = [ pkgconfig e19.efl libdrm gdbm automake114x autoconf ] ++ stdenv.lib.optionals stdenv.isLinux [ libcap ]; NIX_CFLAGS_COMPILE = [ "-I${libdrm}/include/libdrm" ]; diff --git a/pkgs/desktops/gnome-2/platform/gtkglextmm/default.nix b/pkgs/desktops/gnome-2/platform/gtkglextmm/default.nix index bf09bd93eebc..97bad111ca74 100644 --- a/pkgs/desktops/gnome-2/platform/gtkglextmm/default.nix +++ b/pkgs/desktops/gnome-2/platform/gtkglextmm/default.nix @@ -1,4 +1,6 @@ -{ stdenv, fetchurl, pkgconfig, gtkglext, gtkmm, gtk, mesa, gdk_pixbuf }: +{ stdenv, fetchurl, pkgconfig, gtkglext, gtkmm, gtk, mesa, gdk_pixbuf +, pangox_compat, libXmu +}: stdenv.mkDerivation rec { name = "gtkglextmm-${minVer}.0"; @@ -9,7 +11,16 @@ stdenv.mkDerivation rec { sha256 = "6cd4bd2a240e5eb1e3a24c5a3ebbf7ed905b522b888439778043fdeb58771fea"; }; - patches = [ ./gdk.patch ]; + patches = [ + ./gdk.patch + + # From debian, fixes build with newer gtk "[...] by switching #includes + # around so that the G_DISABLE_DEPRECATED trick in glibmm still works". + # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=707356 + ./fix_ftbfs_gtk_2_36.patch + ]; + + buildInputs = [ pangox_compat libXmu ]; nativeBuildInputs = [pkgconfig]; diff --git a/pkgs/desktops/gnome-2/platform/gtkglextmm/fix_ftbfs_gtk_2_36.patch b/pkgs/desktops/gnome-2/platform/gtkglextmm/fix_ftbfs_gtk_2_36.patch new file mode 100644 index 000000000000..88e271e3eb7b --- /dev/null +++ b/pkgs/desktops/gnome-2/platform/gtkglextmm/fix_ftbfs_gtk_2_36.patch @@ -0,0 +1,121 @@ +Index: gtkglextmm-1.2.0/gdkglext/gdkmm/gl/wrap_init.cc +=================================================================== +--- gtkglextmm-1.2.0.orig/gdkglext/gdkmm/gl/wrap_init.cc 2013-05-16 23:40:48.363207736 +0200 ++++ gtkglextmm-1.2.0/gdkglext/gdkmm/gl/wrap_init.cc 2013-05-16 23:42:40.193801834 +0200 +@@ -1,15 +1,8 @@ +- +-#include <glib.h> +- + // Disable the 'const' function attribute of the get_type() functions. + // GCC would optimize them out because we don't use the return value. + #undef G_GNUC_CONST + #define G_GNUC_CONST /* empty */ + +-#include <gdkmm/gl/wrap_init.h> +-#include <glibmm/error.h> +-#include <glibmm/object.h> +- + // #include the widget headers so that we can call the get_type() static methods: + + #include "tokens.h" +@@ -19,6 +12,12 @@ + #include "pixmap.h" + #include "window.h" + ++#include <glib.h> ++ ++#include <gdkmm/gl/wrap_init.h> ++#include <glibmm/error.h> ++#include <glibmm/object.h> ++ + extern "C" + { + +Index: gtkglextmm-1.2.0/gdkglext/gdkmm/gl/query.cc +=================================================================== +--- gtkglextmm-1.2.0.orig/gdkglext/gdkmm/gl/query.cc 2013-05-16 23:40:48.363207736 +0200 ++++ gtkglextmm-1.2.0/gdkglext/gdkmm/gl/query.cc 2013-05-16 23:42:40.193801834 +0200 +@@ -17,10 +17,10 @@ + * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA. + */ + +-#include <gdk/gdkglquery.h> +- + #include "query.h" + ++#include <gdk/gdkglquery.h> ++ + namespace Gdk + { + namespace GL +Index: gtkglextmm-1.2.0/gdkglext/gdkmm/gl/pixmapext.cc +=================================================================== +--- gtkglextmm-1.2.0.orig/gdkglext/gdkmm/gl/pixmapext.cc 2013-05-16 23:40:48.363207736 +0200 ++++ gtkglextmm-1.2.0/gdkglext/gdkmm/gl/pixmapext.cc 2013-05-16 23:42:40.193801834 +0200 +@@ -17,11 +17,11 @@ + * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA. + */ + ++#include "pixmapext.h" ++ + #include <gdk/gdkgldrawable.h> + #include <gdk/gdkglpixmap.h> + +-#include "pixmapext.h" +- + namespace Gdk + { + namespace GL +Index: gtkglextmm-1.2.0/gdkglext/gdkmm/gl/windowext.cc +=================================================================== +--- gtkglextmm-1.2.0.orig/gdkglext/gdkmm/gl/windowext.cc 2013-05-16 23:40:48.363207736 +0200 ++++ gtkglextmm-1.2.0/gdkglext/gdkmm/gl/windowext.cc 2013-05-16 23:42:40.193801834 +0200 +@@ -17,11 +17,11 @@ + * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA. + */ + ++#include "windowext.h" ++ + #include <gdk/gdkgldrawable.h> + #include <gdk/gdkglwindow.h> + +-#include "windowext.h" +- + namespace Gdk + { + namespace GL +Index: gtkglextmm-1.2.0/gdkglext/gdkmm/gl/font.cc +=================================================================== +--- gtkglextmm-1.2.0.orig/gdkglext/gdkmm/gl/font.cc 2004-05-18 08:01:49.000000000 +0200 ++++ gtkglextmm-1.2.0/gdkglext/gdkmm/gl/font.cc 2013-05-16 23:43:07.637456821 +0200 +@@ -17,10 +17,10 @@ + * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA. + */ + +-#include <gdk/gdkglfont.h> +- + #include "font.h" + ++#include <gdk/gdkglfont.h> ++ + namespace Gdk + { + namespace GL +Index: gtkglextmm-1.2.0/gdkglext/gdkmm/gl/init.cc +=================================================================== +--- gtkglextmm-1.2.0.orig/gdkglext/gdkmm/gl/init.cc 2003-02-27 10:49:24.000000000 +0100 ++++ gtkglextmm-1.2.0/gdkglext/gdkmm/gl/init.cc 2013-05-16 23:44:38.320316782 +0200 +@@ -19,11 +19,11 @@ + + #include <cstdlib> + +-#include <gdk/gdkglinit.h> +- + #include "wrap_init.h" + #include "init.h" + ++#include <gdk/gdkglinit.h> ++ + namespace Gdk + { + namespace GL diff --git a/pkgs/desktops/gnome-3/3.16/apps/evolution/default.nix b/pkgs/desktops/gnome-3/3.16/apps/evolution/default.nix index af60d8906735..b4240a35a68f 100644 --- a/pkgs/desktops/gnome-3/3.16/apps/evolution/default.nix +++ b/pkgs/desktops/gnome-3/3.16/apps/evolution/default.nix @@ -7,11 +7,11 @@ let majVer = gnome3.version; in stdenv.mkDerivation rec { - name = "evolution-${majVer}.1"; + name = "evolution-${majVer}.3"; src = fetchurl { url = "mirror://gnome/sources/evolution/${majVer}/${name}.tar.xz"; - sha256 = "1lm877rrcfy98mpp4iq7m9p8r1nr9kir916n4qin2ygas9zx0qlb"; + sha256 = "1mh769adz40r22x0jw5z4carkcbhx36qy2j8kl2djjbp1jf5vhnd"; }; doCheck = true; diff --git a/pkgs/desktops/gnome-3/3.16/apps/vinagre/default.nix b/pkgs/desktops/gnome-3/3.16/apps/vinagre/default.nix new file mode 100644 index 000000000000..b2cf8277641a --- /dev/null +++ b/pkgs/desktops/gnome-3/3.16/apps/vinagre/default.nix @@ -0,0 +1,29 @@ +{ stdenv, fetchurl, pkgconfig, gtk3, gnome3, vte, libxml2, gtkvnc, intltool +, libsecret, itstool, makeWrapper, librsvg }: + +stdenv.mkDerivation rec { + name = "vinagre-${version}"; + + majVersion = gnome3.version; + version = "${majVersion}.1"; + + src = fetchurl { + url = "mirror://gnome/sources/vinagre/${majVersion}/${name}.tar.xz"; + sha256 = "0gs8sqd4r6jlgxn1b7ggyfcisig50z79p0rmigpzwpjjx1bh0z6p"; + }; + + buildInputs = [ pkgconfig gtk3 vte libxml2 gtkvnc intltool libsecret + itstool makeWrapper gnome3.defaultIconTheme librsvg ]; + + preFixup = '' + wrapProgram "$out/bin/vinagre" \ + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH:$out/share" + ''; + + meta = with stdenv.lib; { + homepage = https://wiki.gnome.org/Apps/Vinagre; + description = "Remote desktop viewer for GNOME"; + platforms = platforms.linux; + maintainers = [ maintainers.lethalman ]; + }; +} diff --git a/pkgs/desktops/gnome-3/3.16/core/dconf-editor/default.nix b/pkgs/desktops/gnome-3/3.16/core/dconf-editor/default.nix index 06c01d305f84..e69bcd390329 100644 --- a/pkgs/desktops/gnome-3/3.16/core/dconf-editor/default.nix +++ b/pkgs/desktops/gnome-3/3.16/core/dconf-editor/default.nix @@ -13,12 +13,12 @@ stdenv.mkDerivation rec { sha256 = "0vl5ygbh8blbk3710w34lmhxxl4g275vzpyhjsq0016c597isp88"; }; - buildInputs = [ vala libxslt pkgconfig glib dbus_glib gnome3.gtk libxml2 + buildInputs = [ vala libxslt pkgconfig glib dbus_glib gnome3.gtk libxml2 gnome3.defaultIconTheme intltool docbook_xsl docbook_xsl_ns makeWrapper gnome3.dconf ]; preFixup = '' wrapProgram "$out/bin/dconf-editor" \ - --prefix XDG_DATA_DIRS : "$GSETTINGS_SCHEMAS_PATH" + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH" ''; meta = with stdenv.lib; { diff --git a/pkgs/desktops/gnome-3/3.16/core/evolution-data-server/default.nix b/pkgs/desktops/gnome-3/3.16/core/evolution-data-server/default.nix index 7193b8454681..82397b385d59 100644 --- a/pkgs/desktops/gnome-3/3.16/core/evolution-data-server/default.nix +++ b/pkgs/desktops/gnome-3/3.16/core/evolution-data-server/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { - name = "evolution-data-server-${gnome3.version}.1"; + name = "evolution-data-server-${gnome3.version}.3"; src = fetchurl { url = "mirror://gnome/sources/evolution-data-server/${gnome3.version}/${name}.tar.xz"; - sha256 = "0lgb8jvn8kx50692gg1m9klvwm7msvk4f7wm0yl7rj880wbxzvh4"; + sha256 = "19dcvhlqh25pkkd29hhm9yik8xxfy01hcakikrai0x1a04aa2s7f"; }; buildInputs = with gnome3; diff --git a/pkgs/desktops/gnome-3/3.16/core/gcr/default.nix b/pkgs/desktops/gnome-3/3.16/core/gcr/default.nix index b3acdee072df..f9d87298fff4 100644 --- a/pkgs/desktops/gnome-3/3.16/core/gcr/default.nix +++ b/pkgs/desktops/gnome-3/3.16/core/gcr/default.nix @@ -11,10 +11,12 @@ stdenv.mkDerivation rec { }; buildInputs = [ - pkgconfig intltool gnupg p11_kit glib gobjectIntrospection libxslt + pkgconfig intltool gnupg glib gobjectIntrospection libxslt libgcrypt libtasn1 dbus_glib gtk pango gdk_pixbuf atk makeWrapper vala ]; + propagatedBuildInputs = [ p11_kit ]; + #doCheck = true; preFixup = '' diff --git a/pkgs/desktops/gnome-3/3.16/core/gnome-bluetooth/default.nix b/pkgs/desktops/gnome-3/3.16/core/gnome-bluetooth/default.nix index ab8f380f672a..5b7d7c19d296 100644 --- a/pkgs/desktops/gnome-3/3.16/core/gnome-bluetooth/default.nix +++ b/pkgs/desktops/gnome-3/3.16/core/gnome-bluetooth/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, gnome3, pkgconfig, intltool, glib -, udev, itstool, libxml2 }: +, udev, itstool, libxml2, makeWrapper }: stdenv.mkDerivation rec { name = "gnome-bluetooth-${gnome3.version}.1"; @@ -9,8 +9,13 @@ stdenv.mkDerivation rec { sha256 = "12z0792j5ln238ajhgqx5jrm34wz2yqbbskhlp23p9c0cwnj1srz"; }; - buildInputs = with gnome3; [ pkgconfig intltool glib gtk3 udev libxml2 - gsettings_desktop_schemas itstool ]; + buildInputs = with gnome3; [ pkgconfig intltool glib gtk3 udev libxml2 gnome3.defaultIconTheme + makeWrapper gsettings_desktop_schemas itstool ]; + + preFixup = '' + wrapProgram "$out/bin/bluetooth-sendto" \ + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH" + ''; meta = with stdenv.lib; { homepage = https://help.gnome.org/users/gnome-bluetooth/stable/index.html.en; diff --git a/pkgs/desktops/gnome-3/3.16/default.nix b/pkgs/desktops/gnome-3/3.16/default.nix index 15f4a210e04a..f92d09e9fe5f 100644 --- a/pkgs/desktops/gnome-3/3.16/default.nix +++ b/pkgs/desktops/gnome-3/3.16/default.nix @@ -1,6 +1,18 @@ -{ callPackage, pkgs, self }: +{ pkgs }: + +let + + pkgsFun = overrides: + let + self = self_ // overrides; + self_ = with self; { + + overridePackages = f: + let newself = pkgsFun (f newself self); + in newself; + + callPackage = pkgs.newScope self; -rec { corePackages = with gnome3; [ pkgs.desktop_file_utils pkgs.ibus pkgs.shared_mime_info # for update-mime-database @@ -16,7 +28,7 @@ rec { gnome-shell-extensions gnome-system-log gnome-system-monitor gnome_terminal gnome-user-docs bijiben evolution file-roller gedit gnome-clocks gnome-music gnome-tweak-tool gnome-photos - nautilus-sendto dconf-editor + nautilus-sendto dconf-editor vinagre ]; inherit (pkgs) libsoup glib gtk2 webkitgtk24x gtk3 gtkmm3 libcanberra; @@ -257,7 +269,7 @@ rec { seahorse = callPackage ./apps/seahorse { }; - pomodoro = callPackage ./apps/pomodoro { }; + vinagre = callPackage ./apps/vinagre { }; #### Dev http://ftp.gnome.org/pub/GNOME/devtools/ @@ -267,20 +279,14 @@ rec { #### Misc -- other packages on http://ftp.gnome.org/pub/GNOME/sources/ + california = callPackage ./misc/california { }; + geary = callPackage ./misc/geary { webkitgtk = webkitgtk24x; }; gfbgraph = callPackage ./misc/gfbgraph { }; - goffice = callPackage ./misc/goffice { }; - - goffice_0_8 = callPackage ./misc/goffice/0.8.nix { - inherit (pkgs.gnome2) libglade libgnomeui; - gconf = pkgs.gnome2.GConf; - libart = pkgs.gnome2.libart_lgpl; - }; - gitg = callPackage ./misc/gitg { webkitgtk = webkitgtk24x; }; @@ -301,4 +307,9 @@ rec { gtkhtml = callPackage ./misc/gtkhtml { }; -} + pomodoro = callPackage ./misc/pomodoro { }; + + }; + in self; # pkgsFun + +in pkgsFun {} diff --git a/pkgs/desktops/gnome-3/3.16/misc/california/0002-Build-with-evolution-data-server-3.13.90.patch b/pkgs/desktops/gnome-3/3.16/misc/california/0002-Build-with-evolution-data-server-3.13.90.patch new file mode 100644 index 000000000000..c229cc96094f --- /dev/null +++ b/pkgs/desktops/gnome-3/3.16/misc/california/0002-Build-with-evolution-data-server-3.13.90.patch @@ -0,0 +1,39 @@ +diff --git a/configure.ac b/configure.ac +index 8a94642..1ca6426 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -27,7 +27,7 @@ AC_SUBST(LDFLAGS) + GLIB_REQUIRED=2.38.0 + GTK_REQUIRED=3.12.2 + GEE_REQUIRED=0.10.5 +-ECAL_REQUIRED=3.8.5 ++ECAL_REQUIRED=3.13.90 + LIBSOUP_REQUIRED=2.44 + GDATA_REQUIRED=0.14.0 + GOA_REQUIRED=3.8.3 +diff --git a/src/backing/eds/backing-eds-calendar-source.vala b/src/backing/eds/backing-eds-calendar-source.vala +index ee6a572..5009b5d 100644 +--- a/src/backing/eds/backing-eds-calendar-source.vala ++++ b/src/backing/eds/backing-eds-calendar-source.vala +@@ -256,7 +256,7 @@ internal class EdsCalendarSource : CalendarSource { + + // Invoked by EdsStore prior to making it available outside of unit + internal async void open_async(Cancellable? cancellable) throws Error { +- client = (E.CalClient) yield E.CalClient.connect(eds_source, E.CalClientSourceType.EVENTS, ++ client = (E.CalClient) yield E.CalClient.connect(eds_source, E.CalClientSourceType.EVENTS, 1, + cancellable); + + client.bind_property("readonly", this, PROP_READONLY, BindingFlags.SYNC_CREATE); +diff --git a/vapi/libecal-1.2.vapi b/vapi/libecal-1.2.vapi +index 6ead3ec..46fd711 100644 +--- a/vapi/libecal-1.2.vapi ++++ b/vapi/libecal-1.2.vapi +@@ -23,7 +23,7 @@ namespace E { + public bool check_save_schedules (); + public static bool check_timezones (iCal.icalcomponent comp, GLib.List comps, GLib.Callback tzlookup, void* ecalclient, GLib.Cancellable cancellable) throws GLib.Error; + [CCode (finish_name = "e_cal_client_connect_finish")] +- public static async unowned E.Client connect (E.Source source, E.CalClientSourceType source_type, GLib.Cancellable cancellable) throws GLib.Error; ++ public static async unowned E.Client connect (E.Source source, E.CalClientSourceType source_type, uint32 wait_for_connected_seconds, GLib.Cancellable cancellable) throws GLib.Error; + public static unowned E.Client connect_sync (E.Source source, E.CalClientSourceType source_type, GLib.Cancellable cancellable) throws GLib.Error; + [CCode (finish_name = "e_cal_client_create_object_finish")] + public async void create_object (iCal.icalcomponent icalcomp, GLib.Cancellable? cancellable, out string out_uid) throws GLib.Error; diff --git a/pkgs/desktops/gnome-3/3.16/misc/california/default.nix b/pkgs/desktops/gnome-3/3.16/misc/california/default.nix new file mode 100644 index 000000000000..4bdeeb23a91e --- /dev/null +++ b/pkgs/desktops/gnome-3/3.16/misc/california/default.nix @@ -0,0 +1,39 @@ +{ stdenv, fetchurl, intltool, pkgconfig, gtk3, vala, makeWrapper +, gnome3, glib, libsoup, libgdata, sqlite, itstool, xdg_utils }: + +let + majorVersion = "0.4"; +in +stdenv.mkDerivation rec { + name = "california-${majorVersion}.0"; + + src = fetchurl { + url = "mirror://gnome/sources/california/${majorVersion}/${name}.tar.xz"; + sha256 = "1dky2kllv469k8966ilnf4xrr7z35pq8mdvs7kwziy59cdikapxj"; + }; + + propagatedUserEnvPkgs = [ gnome3.gnome_themes_standard ]; + + buildInputs = [ makeWrapper intltool pkgconfig vala glib gtk3 gnome3.libgee + libsoup libgdata gnome3.gnome_online_accounts gnome3.evolution_data_server + sqlite itstool xdg_utils gnome3.gsettings_desktop_schemas ]; + + preFixup = '' + wrapProgram "$out/bin/california" \ + --set GDK_PIXBUF_MODULE_FILE "$GDK_PIXBUF_MODULE_FILE" \ + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS:${gnome3.defaultIconTheme}/share:${gnome3.gnome_themes_standard}/share:$out/share:$GSETTINGS_SCHEMAS_PATH:${gnome3.gsettings_desktop_schemas}/share" + ''; + + enableParallelBuilding = true; + + # Apply fedoras patch to build with evolution-data-server >3.13 + patches = [ ./0002-Build-with-evolution-data-server-3.13.90.patch ]; + + meta = with stdenv.lib; { + homepage = https://wiki.gnome.org/Apps/California; + description = "Calendar application for GNOME 3"; + maintainers = with maintainers; [ pSub ]; + license = licenses.lgpl21; + platforms = platforms.linux; + }; +} diff --git a/pkgs/desktops/gnome-3/3.16/apps/pomodoro/default.nix b/pkgs/desktops/gnome-3/3.16/misc/pomodoro/default.nix index ad95b76b2a34..650d978277bd 100644 --- a/pkgs/desktops/gnome-3/3.16/apps/pomodoro/default.nix +++ b/pkgs/desktops/gnome-3/3.16/misc/pomodoro/default.nix @@ -38,9 +38,11 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = https://github.com/codito/gnome-shell-pomodoro; - description = - "Personal information management application that provides integrated " + - "mail, calendaring and address book functionality"; + description = "A time management utility for GNOME based on the pomodoro technique"; + longDescription = '' + This GNOME utility helps to manage time according to Pomodoro Technique. + It intends to improve productivity and focus by taking short breaks. + ''; maintainers = with maintainers; [ DamienCassou jgeerds ]; license = licenses.gpl3; platforms = platforms.linux; diff --git a/pkgs/desktops/plasma-5.3/default.nix b/pkgs/desktops/plasma-5.3/default.nix index c4fb624a3771..39ccb4e3c304 100644 --- a/pkgs/desktops/plasma-5.3/default.nix +++ b/pkgs/desktops/plasma-5.3/default.nix @@ -12,7 +12,7 @@ # make a copy of this directory first. After copying, be sure to delete ./tmp # if it exists. Then follow the minor update instructions. -{ autonix, kf5, pkgs, qt5, stdenv, debug ? false }: +{ autonix, kf5, kdeApps, pkgs, qt5, stdenv, debug ? false }: with stdenv.lib; with autonix; @@ -143,19 +143,19 @@ let }; plasma-workspace = with pkgs; super.plasma-workspace // { - patches = [ - (substituteAll { - src = ./plasma-workspace/0001-startkde-NixOS-patches.patch; - inherit (pkgs) bash gnused gnugrep socat; - inherit (kf5) kconfig kinit kservice; - inherit (pkgs.xorg) mkfontdir xmessage xprop xrdb xset xsetroot; - qt5tools = qt5.tools; - dbus_tools = pkgs.dbus.tools; - }) - ]; + patches = [ ./plasma-workspace/0001-startkde-NixOS-patches.patch ]; buildInputs = with xlibs; super.plasma-workspace.buildInputs ++ [ libSM libXcursor pam ]; + + inherit (pkgs) bash gnused gnugrep socat; + inherit (kf5) kconfig kinit kservice; + inherit (pkgs.xorg) mkfontdir xmessage xprop xrdb xset xsetroot; + kde_workspace = kdeApps.kde-workspace; + qt5tools = qt5.tools; + dbus_tools = pkgs.dbus.tools; + postPatch = '' + substituteAllInPlace startkde/startkde.cmake substituteInPlace startkde/kstartupconfig/kstartupconfig.cpp \ --replace kdostartupconfig5 $out/bin/kdostartupconfig5 ''; diff --git a/pkgs/desktops/plasma-5.3/plasma-workspace/0001-startkde-NixOS-patches.patch b/pkgs/desktops/plasma-5.3/plasma-workspace/0001-startkde-NixOS-patches.patch index a542fb7b87d3..86c6dd857be5 100644 --- a/pkgs/desktops/plasma-5.3/plasma-workspace/0001-startkde-NixOS-patches.patch +++ b/pkgs/desktops/plasma-5.3/plasma-workspace/0001-startkde-NixOS-patches.patch @@ -1,14 +1,14 @@ -From 37abdee4e25f6aff55da838864d1a67a7be758ad Mon Sep 17 00:00:00 2001 +From ff61c8ba856328a60e29938466b69d0bb38a357f Mon Sep 17 00:00:00 2001 From: Thomas Tuegel <ttuegel@gmail.com> Date: Tue, 2 Jun 2015 11:21:43 -0500 Subject: [PATCH] startkde: NixOS patches --- - startkde/startkde.cmake | 214 ++++++++++++++++++++---------------------------- - 1 file changed, 87 insertions(+), 127 deletions(-) + startkde/startkde.cmake | 218 ++++++++++++++++++++---------------------------- + 1 file changed, 89 insertions(+), 129 deletions(-) diff --git a/startkde/startkde.cmake b/startkde/startkde.cmake -index 24e5c1b..787d719 100644 +index 24e5c1b..e7bdd32 100644 --- a/startkde/startkde.cmake +++ b/startkde/startkde.cmake @@ -1,8 +1,31 @@ @@ -93,7 +93,7 @@ index 24e5c1b..787d719 100644 #This is basically setting defaults so we can use them with kstartupconfig5 cat >$configDir/startupconfigkeys <<EOF -@@ -106,53 +111,19 @@ toolBarFont=Oxygen-Sans,9,-1,5,50,0,0,0,0,0 +@@ -106,55 +111,21 @@ toolBarFont=Oxygen-Sans,9,-1,5,50,0,0,0,0,0 EOF } @@ -148,9 +148,12 @@ index 24e5c1b..787d719 100644 if test -n "$kcminputrc_mouse_cursortheme" -o -n "$kcminputrc_mouse_cursorsize" ; then - @EXPORT_XCURSOR_PATH@ - kapplymousetheme "$kcminputrc_mouse_cursortheme" "$kcminputrc_mouse_cursorsize" +- kapplymousetheme "$kcminputrc_mouse_cursortheme" "$kcminputrc_mouse_cursorsize" ++ @kde_workspace@/bin/kapplymousetheme "$kcminputrc_mouse_cursortheme" "$kcminputrc_mouse_cursorsize" if test $? -eq 10; then -@@ -168,15 +139,33 @@ if test -n "$kcminputrc_mouse_cursortheme" -o -n "$kcminputrc_mouse_cursorsize" + XCURSOR_THEME=breeze_cursors + export XCURSOR_THEME +@@ -168,21 +139,39 @@ if test -n "$kcminputrc_mouse_cursortheme" -o -n "$kcminputrc_mouse_cursorsize" fi fi @@ -175,7 +178,7 @@ index 24e5c1b..787d719 100644 +# Make sure that D-Bus is running +# D-Bus autolaunch is broken +if test -z "$DBUS_SESSION_BUS_ADDRESS" ; then -+ eval `@dbus_tools@/dbus-launch --sh-syntax --exit-with-session` ++ eval `@dbus_tools@/bin/dbus-launch --sh-syntax --exit-with-session` +fi +if @qt5tools@/bin/qdbus >/dev/null 2>/dev/null; then + : # ok @@ -189,6 +192,13 @@ index 24e5c1b..787d719 100644 ksplash_pid= if test -z "$dl"; then # the splashscreen and progress indicator + case "$ksplashrc_ksplash_engine" in + KSplashQML) +- ksplash_pid=`ksplashqml "${ksplashrc_ksplash_theme}" --pid` ++ ksplash_pid=`@out@/bin/ksplashqml "${ksplashrc_ksplash_theme}" --pid` + ;; + None) + ;; @@ -205,8 +194,7 @@ fi # For anything else (that doesn't set env vars, or that needs a window manager), # better use the Autostart folder. diff --git a/pkgs/development/compilers/ghcjs/default.nix b/pkgs/development/compilers/ghcjs/default.nix index 696415f4562d..e4288b9a2cbd 100644 --- a/pkgs/development/compilers/ghcjs/default.nix +++ b/pkgs/development/compilers/ghcjs/default.nix @@ -41,22 +41,22 @@ let version = "0.1.0"; ghcjsBoot = fetchgit { url = git://github.com/ghcjs/ghcjs-boot.git; - rev = "5c3ca2db12bd3e92d3eeaead8bcb6b347174a30f"; # 7.10 branch - sha256 = "0rpfb73bd0maccg3bjf51l23byy0h2i47wph99wblmkdp8ywxkpf"; + rev = "d3581514d0a5073f8220a2f5baafe6866faa35a0"; # 7.10 branch + sha256 = "1p13ifidpi7y1mjq5qv9229isfnsiklizci7i55sf83mp6wqdyvr"; fetchSubmodules = true; }; shims = fetchgit { url = git://github.com/ghcjs/shims.git; - rev = "6ada4bf1a084d1b80b993303d35ed863d219b031"; # master branch - sha256 = "0dhfnjj3rxdbb2m1pbnjc2yp4xcgsfdrsinljgdmg0hpqkafp4vc"; + rev = "9b196ff5ff13a24997011009b37c980c5534e24f"; # master branch + sha256 = "1zsfxka692fr3zb710il7g1sj64xwaxmasimciylb4wx84h7c30w"; }; in mkDerivation (rec { pname = "ghcjs"; inherit version; src = fetchgit { url = git://github.com/ghcjs/ghcjs.git; - rev = "15b7a34ddc11075a335e097f6109ad57ca03edab"; # master branch - sha256 = "0h6jdwd7lh3rkfsqpq3s6iavqkz1a88grzcxrcqj4rjilzdw288q"; + rev = "c1b6239b0289371dc6b8d17dfd845c14bd4dc490"; # master branch + sha256 = "0ncbk7m1l7cpdgmabm14d7f97fw3vy0hmpj4vs4kkwhhfjf6kp8s"; }; isLibrary = true; isExecutable = true; @@ -103,7 +103,7 @@ in mkDerivation (rec { # Make the patches be relative their corresponding package's directory. # See: https://github.com/ghcjs/ghcjs-boot/pull/12 - for patch in $topDir/ghcjs-boot/patches/*.patch; do + for patch in "$topDir/ghcjs-boot/patches/"*.patch; do echo "fixing patch: $patch" sed -i -e 's@ \(a\|b\)/boot/[^/]\+@ \1@g' $patch done diff --git a/pkgs/development/compilers/go/1.1-darwin.nix b/pkgs/development/compilers/go/1.1-darwin.nix index 5b17f56ac37a..776c1e04f082 100644 --- a/pkgs/development/compilers/go/1.1-darwin.nix +++ b/pkgs/development/compilers/go/1.1-darwin.nix @@ -69,11 +69,11 @@ stdenv.mkDerivation { cp ./misc/emacs/* $out/share/emacs/site-lisp/ ''; - meta = { + meta = with stdenv.lib; { homepage = http://golang.org/; description = "The Go Programming language"; - license = "BSD"; - maintainers = with stdenv.lib.maintainers; [ zef ]; - platforms = stdenv.lib.platforms.darwin; + license = licenses.bsd3; + maintainers = with maintainers; [ zef ]; + platforms = platforms.darwin; }; } diff --git a/pkgs/development/compilers/go/1.1.nix b/pkgs/development/compilers/go/1.1.nix index 11640f2393d2..de34e3e3cdac 100644 --- a/pkgs/development/compilers/go/1.1.nix +++ b/pkgs/development/compilers/go/1.1.nix @@ -90,12 +90,12 @@ stdenv.mkDerivation { cp ./misc/emacs/* $out/share/emacs/site-lisp/ ''; - meta = { + meta = with stdenv.lib; { branch = "1.1"; homepage = http://golang.org/; description = "The Go Programming language"; - license = "BSD"; - maintainers = with stdenv.lib.maintainers; [ pierron viric ]; - platforms = stdenv.lib.platforms.linux; + license = licenses.bsd3; + maintainers = with maintainers; [ pierron viric ]; + platforms = platforms.linux; }; } diff --git a/pkgs/development/compilers/go/1.2.nix b/pkgs/development/compilers/go/1.2.nix index 113e2118efb6..bbedea812b8d 100644 --- a/pkgs/development/compilers/go/1.2.nix +++ b/pkgs/development/compilers/go/1.2.nix @@ -81,12 +81,12 @@ stdenv.mkDerivation { cp ./misc/emacs/* $out/share/emacs/site-lisp/ ''; - meta = { + meta = with stdenv.lib; { branch = "1.2"; homepage = http://golang.org/; description = "The Go Programming language"; - license = "BSD"; - maintainers = with stdenv.lib.maintainers; [ pierron viric ]; - platforms = stdenv.lib.platforms.linux; + license = licenses.bsd3; + maintainers = with maintainers; [ pierron viric ]; + platforms = platforms.linux; }; } diff --git a/pkgs/development/compilers/go/1.3.nix b/pkgs/development/compilers/go/1.3.nix index 6d88049cfbee..52a388aff1fe 100644 --- a/pkgs/development/compilers/go/1.3.nix +++ b/pkgs/development/compilers/go/1.3.nix @@ -102,12 +102,12 @@ stdenv.mkDerivation { setupHook = ./setup-hook.sh; - meta = { + meta = with stdenv.lib; { branch = "1.3"; homepage = http://golang.org/; description = "The Go Programming language"; - license = "BSD"; - maintainers = with stdenv.lib.maintainers; [ cstrahan ]; - platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; + license = licenses.bsd3; + maintainers = with maintainers; [ cstrahan ]; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/compilers/go/1.4.nix b/pkgs/development/compilers/go/1.4.nix index 1feaf68930ac..12642eeace58 100644 --- a/pkgs/development/compilers/go/1.4.nix +++ b/pkgs/development/compilers/go/1.4.nix @@ -88,12 +88,12 @@ stdenv.mkDerivation rec { setupHook = ./setup-hook.sh; - meta = { + meta = with stdenv.lib; { branch = "1.4"; homepage = http://golang.org/; description = "The Go Programming language"; - license = "BSD"; - maintainers = with stdenv.lib.maintainers; [ cstrahan wkennington ]; - platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; + license = licenses.bsd3; + maintainers = with maintainers; [ cstrahan wkennington ]; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/compilers/julia/0.2.nix b/pkgs/development/compilers/julia/0.2.nix index cc1be3db8a5b..9d585e07fe1a 100644 --- a/pkgs/development/compilers/julia/0.2.nix +++ b/pkgs/development/compilers/julia/0.2.nix @@ -1,6 +1,6 @@ { stdenv, fetchgit, gfortran, perl, m4, llvm, gmp, pcre, zlib , readline, fftwSinglePrec, fftw, libunwind, suitesparse, glpk, fetchurl - , ncurses, libunistring, lighttpd, patchelf, openblas, liblapack + , ncurses, libunistring, lighttpd, patchelf, openblas , tcl, tk, xproto, libX11, git, mpfr } : let @@ -71,7 +71,7 @@ stdenv.mkDerivation rec { buildInputs = [ gfortran perl m4 gmp pcre llvm readline zlib fftw fftwSinglePrec libunwind suitesparse glpk ncurses libunistring patchelf - openblas liblapack tcl tk xproto libX11 git mpfr + openblas tcl tk xproto libX11 git mpfr ]; configurePhase = '' @@ -91,14 +91,13 @@ stdenv.mkDerivation rec { copy_kill_hash "${dsfmt_src}" deps/random ${if realGcc ==null then "" else - ''export NIX_LDFLAGS="$NIX_LDFLAGS -L${realGcc}/lib -L${realGcc}/lib64 -lpcre -llapack -lm -lfftw3f -lfftw3 -lglpk -lunistring -lz -lgmp -lmpfr"''} + ''export NIX_LDFLAGS="$NIX_LDFLAGS -L${realGcc}/lib -L${realGcc}/lib64 -lpcre -lopenblas -lm -lfftw3f -lfftw3 -lglpk -lunistring -lz -lgmp -lmpfr"''} export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -fPIC " export LDFLAGS="-L${suitesparse}/lib -L$out/lib/julia -Wl,-rpath,$out/lib/julia" export GLPK_PREFIX="${glpk}/include" - mkdir -p "$out/lib" sed -e "s@/usr/local/lib@$out/lib@g" -i deps/Makefile sed -e "s@/usr/lib@$out/lib@g" -i deps/Makefile @@ -111,9 +110,12 @@ stdenv.mkDerivation rec { preBuild = '' mkdir -p usr/lib - - echo "$out" + mkdir -p "$out/lib" + ln -s "${openblas}/lib/libopenblas.so" "$out/lib/libblas.so" + ln -s "${openblas}/lib/libopenblas.so" "$out/lib/liblapack.so" + + echo "$out" ( cd "$(mktemp -d)" for i in "${suitesparse}"/lib/lib*.a; do diff --git a/pkgs/development/compilers/julia/0.3.nix b/pkgs/development/compilers/julia/0.3.nix index 9f216c7207fc..4566752340f5 100644 --- a/pkgs/development/compilers/julia/0.3.nix +++ b/pkgs/development/compilers/julia/0.3.nix @@ -1,142 +1,134 @@ -{ stdenv, fetchgit, gfortran, perl, m4, llvm, gmp, pcre, zlib - , readline, fftwSinglePrec, fftw, libunwind, suitesparse, glpk, fetchurl - , ncurses, libunistring, patchelf, openblas, liblapack - , tcl, tk, xproto, libX11, git, mpfr, which, wget - } : +{ stdenv, fetchgit, fetchurl +# build tools +, gfortran, git, m4, patchelf, perl, which +# libjulia dependencies +, libunwind, llvm, readline, utf8proc, zlib +# standard library dependencies +, double_conversion, fftwSinglePrec, fftw, glpk, gmp, mpfr, pcre +, openblas, arpack, suitesparse +}: + +with stdenv.lib; -assert stdenv.isLinux; - -let - realGcc = stdenv.cc.cc; -in stdenv.mkDerivation rec { pname = "julia"; - version = "0.3.6"; + version = "0.3.9"; name = "${pname}-${version}"; - dsfmt_ver = "2.2"; - grisu_ver = "1.1.1"; - openblas_ver = "v0.2.13"; - lapack_ver = "3.5.0"; - arpack_ver = "3.1.5"; - patchelf_ver = "0.8"; - pcre_ver = "8.36"; - utf8proc_ver = "1.1.6"; - - dsfmt_src = fetchurl { - url = "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-${dsfmt_ver}.tar.gz"; - name = "dsfmt-${dsfmt_ver}.tar.gz"; - md5 = "cb61be3be7254eae39684612c524740d"; - }; - grisu_src = fetchurl { - url = "http://double-conversion.googlecode.com/files/double-conversion-${grisu_ver}.tar.gz"; - md5 = "29b533ed4311161267bff1a9a97e2953"; - }; - openblas_src = fetchurl { - url = "https://github.com/xianyi/OpenBLAS/tarball/${openblas_ver}"; - name = "openblas-${openblas_ver}.tar.gz"; - md5 = "74adf4c0d0d82bff4774be5bf2134183"; - }; - arpack_src = fetchurl rec { - url = "https://github.com/opencollab/arpack-ng/archive/${arpack_ver}.tar.gz"; - md5 = "d84e1b6108d9ee67c0d21aba7099e953"; - name = "arpack-ng-${arpack_ver}.tar.gz"; - }; - lapack_src = fetchurl { - url = "http://www.netlib.org/lapack/lapack-${lapack_ver}.tgz"; - name = "lapack-${lapack_ver}.tgz"; - md5 = "b1d3e3e425b2e44a06760ff173104bdf"; - }; - patchelf_src = fetchurl { - url = "http://hydra.nixos.org/build/1524660/download/2/patchelf-${patchelf_ver}.tar.bz2"; - md5 = "5087261514b4b5814a39c3d3a36eb6ef"; - }; - pcre_src = fetchurl { - url = "ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-${pcre_ver}.tar.bz2"; - md5 = "b767bc9af0c20bc9c1fe403b0d41ad97"; - }; - utf8proc_src = fetchurl { - url = "http://www.public-software-group.org/pub/projects/utf8proc/v${utf8proc_ver}/utf8proc-v${utf8proc_ver}.tar.gz"; - md5 = "2462346301fac2994c34f5574d6c3ca7"; - }; - src = fetchgit { url = "git://github.com/JuliaLang/julia.git"; rev = "refs/tags/v${version}"; - md5 = "d28e8f428485219f756d80c011d5dd32"; + sha256 = "ad0820affefd04eb6fba7deb2603756974711846a251900a9202b8d2665a37cf"; name = "julia-git-v${version}"; }; - buildInputs = [ gfortran perl m4 gmp pcre llvm readline zlib - fftw fftwSinglePrec libunwind suitesparse glpk ncurses libunistring patchelf - openblas liblapack tcl tk xproto libX11 git mpfr which wget - ]; + patches = [ ./0001-work-around-buggy-wcwidth.patch ]; - configurePhase = '' - for i in GMP LLVM PCRE READLINE FFTW LIBUNWIND SUITESPARSE GLPK ZLIB MPFR; - do - makeFlags="$makeFlags USE_SYSTEM_$i=1 " - done - makeFlags="$makeFlags JULIA_CPU_TARGET=core2"; + extraSrcs = + let + dsfmt_ver = "2.2"; + dsfmt_src = fetchurl { + url = "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-${dsfmt_ver}.tar.gz"; + name = "dsfmt-${dsfmt_ver}.tar.gz"; + md5 = "cb61be3be7254eae39684612c524740d"; + }; + in [ dsfmt_src ]; + + prePatch = '' copy_kill_hash(){ cp "$1" "$2/$(basename "$1" | sed -e 's/^[a-z0-9]*-//')" } - for i in "${grisu_src}" "${dsfmt_src}" "${arpack_src}" "${patchelf_src}" \ - "${pcre_src}" "${utf8proc_src}" "${lapack_src}" "${openblas_src}"; do + for i in $extraSrcs; do copy_kill_hash "$i" deps done + ''; - ${if realGcc ==null then "" else - ''export NIX_LDFLAGS="$NIX_LDFLAGS -L${realGcc}/lib -L${realGcc}/lib64 -lpcre -llapack -lm -lfftw3f -lfftw3 -lglpk -lunistring -lz -lgmp -lmpfr -lblas -lopenblas -L$out/lib"''} - export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -fPIC " - - export LDFLAGS="-L${suitesparse}/lib -L$out/lib/julia -Wl,-rpath,$out/lib/julia" - - export GLPK_PREFIX="${glpk}/include" - - mkdir -p "$out/lib" - sed -e "s@/usr/local/lib@$out/lib@g" -i deps/Makefile - sed -e "s@/usr/lib@$out/lib@g" -i deps/Makefile - - export makeFlags="$makeFlags PREFIX=$out SHELL=${stdenv.shell} prefix=$out" - - export dontPatchELF=1 - - export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$PWD/usr/lib:$PWD/usr/lib/julia" + postPatch = '' + sed -i deps/Makefile \ + -e "s@/usr/local/lib@$out/lib@g" \ + -e "s@/usr/lib@$out/lib@g" \ + -e "s@/usr/include/double-conversion@${double_conversion}/include/double-conversion@g" patchShebangs . contrib - export PATH="$PATH:${stdenv.cc.libc}/sbin" - # ldconfig doesn't seem to ever work on NixOS; system-wide ldconfig cache # is probably not what we want anyway on non-NixOS sed -e "s@/sbin/ldconfig@true@" -i src/ccall.* - - ln -s "${openblas}/lib/libopenblas.so" "$out/lib/libblas.so" ''; - preBuild = '' - mkdir -p usr/lib - - echo "$out" - mkdir -p "$out/lib" - ( - cd "$(mktemp -d)" - for i in "${suitesparse}"/lib/lib*.a; do - ar -x $i - done - gcc *.o --shared -o "$out/lib/libsuitesparse.so" - ) - cp "$out/lib/libsuitesparse.so" usr/lib - for i in umfpack cholmod amd camd colamd spqr; do - ln -s libsuitesparse.so "$out"/lib/lib$i.so; - ln -s libsuitesparse.so "usr"/lib/lib$i.so; - done - ''; + buildInputs = + [ libunwind llvm readline utf8proc zlib + double_conversion fftw fftwSinglePrec glpk gmp mpfr pcre + openblas arpack suitesparse + ]; + + nativeBuildInputs = [ gfortran git m4 patchelf perl which ]; + + makeFlags = + let + arch = head (splitString "-" stdenv.system); + march = + { "x86_64-linux" = "x86-64"; + "x86_64-darwin" = "x86-64"; + "i686-linux" = "i686"; + }."${stdenv.system}" or (throw "unsupported system: ${stdenv.system}"); + in [ + "ARCH=${arch}" + "MARCH=${march}" + "JULIA_CPU_TARGET=${march}" + "PREFIX=$(out)" + "prefix=$(out)" + "SHELL=${stdenv.shell}" + + "USE_SYSTEM_BLAS=1" + "LIBBLAS=-lopenblas" + "LIBBLASNAME=libopenblas" + + "USE_SYSTEM_LAPACK=1" + "LIBLAPACK=-lopenblas" + "LIBLAPACKNAME=libopenblas" + + "USE_SYSTEM_ARPACK=1" + "USE_SYSTEM_FFTW=1" + "USE_SYSTEM_GLPK=1" + "USE_SYSTEM_GMP=1" + "USE_SYSTEM_GRISU=1" + "USE_SYSTEM_LIBUNWIND=1" + "USE_SYSTEM_LLVM=1" + "USE_SYSTEM_MPFR=1" + "USE_SYSTEM_PATCHELF=1" + "USE_SYSTEM_PCRE=1" + "USE_SYSTEM_READLINE=1" + "USE_SYSTEM_SUITESPARSE=1" + "USE_SYSTEM_UTF8PROC=1" + "USE_SYSTEM_ZLIB=1" + ]; + + GLPK_PREFIX = "${glpk}/include"; + + NIX_CFLAGS_COMPILE = [ "-fPIC" ]; + + # Julia tries to load these libraries dynamically at runtime, but they can't be found. + # Easier by far to link against them as usual. + # These go in LDFLAGS, where they affect only Julia itself, and not NIX_LDFLAGS, + # where they would also be used for all the private libraries Julia builds. + LDFLAGS = [ + "-larpack" + "-lfftw3_threads" + "-lfftw3f_threads" + "-lglpk" + "-lgmp" + "-lmpfr" + "-lopenblas" + "-lpcre" + "-lsuitesparse" + "-lz" + ]; dontStrip = true; + dontPatchELF = true; enableParallelBuilding = true; @@ -147,8 +139,8 @@ stdenv.mkDerivation rec { description = "High-level performance-oriented dynamical language for technical computing"; homepage = "http://julialang.org/"; license = stdenv.lib.licenses.mit; - maintainers = [ stdenv.lib.maintainers.raskin ]; - platforms = with stdenv.lib.platforms; linux; + maintainers = with stdenv.lib.maintainers; [ raskin ttuegel ]; + platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ]; broken = false; }; } diff --git a/pkgs/development/compilers/julia/0001-work-around-buggy-wcwidth.patch b/pkgs/development/compilers/julia/0001-work-around-buggy-wcwidth.patch new file mode 100644 index 000000000000..7c4870fb2a89 --- /dev/null +++ b/pkgs/development/compilers/julia/0001-work-around-buggy-wcwidth.patch @@ -0,0 +1,24 @@ +From b9070aeab0ab672ffe321089631f9afe263b0caa Mon Sep 17 00:00:00 2001 +From: Thomas Tuegel <ttuegel@gmail.com> +Date: Thu, 4 Jun 2015 12:03:32 -0500 +Subject: [PATCH] work around buggy wcwidth + +--- + test/unicode.jl | 3 ++- + 1 file changed, 2 insertions(+), 1 deletion(-) + +diff --git a/test/unicode.jl b/test/unicode.jl +index 52c3e6a..f1ef698 100644 +--- a/test/unicode.jl ++++ b/test/unicode.jl +@@ -103,5 +103,6 @@ end + + # handling of embedded NUL chars (#10958) + @test length("\0w") == length("\0α") == 2 +-@test strwidth("\0w") == strwidth("\0α") == 1 ++@test strwidth("\0w") == charwidth('\0') + charwidth('w') ++@test strwidth("\0α") == charwidth('\0') + charwidth('α') + @test normalize_string("\0W", casefold=true) == "\0w" +-- +2.4.1 + diff --git a/pkgs/development/compilers/llvm/3.4/llvm.nix b/pkgs/development/compilers/llvm/3.4/llvm.nix index d3beb2e7461c..a44f157a13e5 100644 --- a/pkgs/development/compilers/llvm/3.4/llvm.nix +++ b/pkgs/development/compilers/llvm/3.4/llvm.nix @@ -44,6 +44,7 @@ in stdenv.mkDerivation rec { "-DCMAKE_BUILD_TYPE=Release" "-DLLVM_BUILD_TESTS=ON" "-DLLVM_ENABLE_FFI=ON" + "-DLLVM_REQUIRES_RTTI=1" "-DLLVM_BINUTILS_INCDIR=${binutils}/include" "-DCMAKE_CXX_FLAGS=-std=c++11" ] ++ stdenv.lib.optional (!isDarwin) "-DBUILD_SHARED_LIBS=ON"; diff --git a/pkgs/development/compilers/rustc/1.0.0.nix b/pkgs/development/compilers/rustc/1.0.0.nix index a85ed9290fe2..5bb03b592b94 100644 --- a/pkgs/development/compilers/rustc/1.0.0.nix +++ b/pkgs/development/compilers/rustc/1.0.0.nix @@ -1,5 +1,5 @@ { stdenv, callPackage }: -callPackage ./makeRustcDerivation.nix { +callPackage ./generic.nix { shortVersion = "1.0.0"; isRelease = true; srcSha = "14brziw91d3r88fa1kvpvhap5ws4z8h2mas7h6k9lpsc2zl9blak"; diff --git a/pkgs/development/compilers/rustc/makeRustcDerivation.nix b/pkgs/development/compilers/rustc/generic.nix index 6208190f8dfd..d1091643f779 100644 --- a/pkgs/development/compilers/rustc/makeRustcDerivation.nix +++ b/pkgs/development/compilers/rustc/generic.nix @@ -63,7 +63,7 @@ let version = if isRelease then homepage = http://www.rust-lang.org/; description = "A safe, concurrent, practical language"; maintainers = with maintainers; [ madjar cstrahan wizeman globin ]; - license = map (builtins.getAttr "shortName") [ licenses.mit licenses.asl20 ]; + license = [ licenses.mit licenses.asl20 ]; platforms = platforms.linux; }; @@ -136,6 +136,8 @@ stdenv.mkDerivation { enableParallelBuilding = true; + outputs = [ "out" "doc" ]; + preCheck = "export TZDIR=${tzdata}/share/zoneinfo"; doCheck = true; diff --git a/pkgs/development/compilers/rustc/head.nix b/pkgs/development/compilers/rustc/head.nix index c73a12c6f6e8..5e5b41e8b250 100644 --- a/pkgs/development/compilers/rustc/head.nix +++ b/pkgs/development/compilers/rustc/head.nix @@ -1,5 +1,5 @@ { stdenv, callPackage }: -callPackage ./makeRustcDerivation.nix { +callPackage ./generic.nix { shortVersion = "1.0.0-dev"; isRelease = false; # src rev for master on 2015-05-13 diff --git a/pkgs/development/compilers/squeak/default.nix b/pkgs/development/compilers/squeak/default.nix index 816803d4bd99..6e68defb6248 100644 --- a/pkgs/development/compilers/squeak/default.nix +++ b/pkgs/development/compilers/squeak/default.nix @@ -28,8 +28,9 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ cmake coreutils dbus freetype glib gnused libpthreadstubs - pango pkgconfig libpulseaudio which ]; + buildInputs = [ coreutils dbus freetype glib gnused libpthreadstubs + pango libpulseaudio which ]; + nativeBuildInputs = [ cmake pkgconfig ]; postPatch = '' for i in squeak.in squeak.sh.in; do diff --git a/pkgs/development/compilers/uhc/default.nix b/pkgs/development/compilers/uhc/default.nix index c788112fb91c..1dbfb039f909 100644 --- a/pkgs/development/compilers/uhc/default.nix +++ b/pkgs/development/compilers/uhc/default.nix @@ -2,13 +2,17 @@ let wrappedGhc = ghcWithPackages (hpkgs: with hpkgs; [shuffle hashable mtl network uhc-util uulib] ); in stdenv.mkDerivation rec { - version = "1.1.9.0"; + # Important: + # The commits "Fixate/tag v..." are the released versions. + # Ignore the "bumped version to ...." commits, they do not + # correspond to releases. + version = "1.1.9.1.20150611"; name = "uhc-${version}"; src = fetchgit { url = "https://github.com/UU-ComputerScience/uhc.git"; - rev = "0363bbcf4cf8c47d30c3a188e3e53b3f8454bbe4"; - sha256 = "0sa9b341mm5ggmbydc33ja3h7k9w65qnki9gsaagb06gkvvqc7c2"; + rev = "b80098e07d12900f098ea964b1d2b3f38e5c9900"; + sha256 = "14qg1fd9pgbczcmn5ggkd9674qadx1izmz8363ps7c207dg94f9x"; }; postUnpack = "sourceRoot=\${sourceRoot}/EHC"; diff --git a/pkgs/development/coq-modules/fiat/default.nix b/pkgs/development/coq-modules/fiat/default.nix index 92b69319e0bc..df4ea133cd9c 100644 --- a/pkgs/development/coq-modules/fiat/default.nix +++ b/pkgs/development/coq-modules/fiat/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { buildInputs = [ coq.ocaml coq.camlp5 ]; propagatedBuildInputs = [ coq ]; - enableParallelBuilding = true; + enableParallelBuilding = false; doCheck = true; unpackPhase = '' diff --git a/pkgs/development/coq-modules/mathcomp/1.5.nix b/pkgs/development/coq-modules/mathcomp/1.5.nix deleted file mode 100644 index c984bab49171..000000000000 --- a/pkgs/development/coq-modules/mathcomp/1.5.nix +++ /dev/null @@ -1,26 +0,0 @@ -{stdenv, fetchurl, coq, ssreflect}: - -stdenv.mkDerivation { - - name = "coq-mathcomp-1.5-8.5b2"; - - src = fetchurl { - url = http://ssr.msr-inria.inria.fr/FTP/mathcomp-1.5.coq85beta2.tar.gz; - sha256 = "03bnq44ym43x8shi7whc02l0g5vy6rx8f1imjw478chlgwcxazqy"; - }; - - propagatedBuildInputs = [ coq ssreflect ]; - - enableParallelBuilding = true; - - installFlags = "COQLIB=$(out)/lib/coq/${coq.coq-version}/"; - - meta = with stdenv.lib; { - homepage = http://ssr.msr-inria.inria.fr/; - license = licenses.cecill-b; - maintainers = [ maintainers.vbgl maintainers.jwiegley ]; - platforms = coq.meta.platforms; - hydraPlatforms = []; - }; - -} diff --git a/pkgs/development/coq-modules/mathcomp/default.nix b/pkgs/development/coq-modules/mathcomp/default.nix index 02d06edd538b..7c34e186717c 100644 --- a/pkgs/development/coq-modules/mathcomp/default.nix +++ b/pkgs/development/coq-modules/mathcomp/default.nix @@ -1,26 +1,24 @@ -{stdenv, fetchurl, coq, ssreflect}: +{ callPackage, coq, fetchurl }: -stdenv.mkDerivation { +let src = + if coq.coq-version == "8.4" then - name = "coq-mathcomp-1.5"; + fetchurl { + url = http://ssr.msr-inria.inria.fr/FTP/mathcomp-1.5.tar.gz; + sha256 = "1297svwi18blrlyd8vsqilar2h5nfixlvlifdkbx47aljq4m5bam"; + } - src = fetchurl { - url = http://ssr.msr-inria.inria.fr/FTP/mathcomp-1.5.tar.gz; - sha256 = "1297svwi18blrlyd8vsqilar2h5nfixlvlifdkbx47aljq4m5bam"; - }; + else if coq.coq-version == "8.5" then - propagatedBuildInputs = [ coq ssreflect ]; + fetchurl { + url = http://ssr.msr-inria.inria.fr/FTP/mathcomp-1.5.coq85beta2.tar.gz; + sha256 = "03bnq44ym43x8shi7whc02l0g5vy6rx8f1imjw478chlgwcxazqy"; + } - enableParallelBuilding = true; + else throw "No mathcomp package for Coq version ${coq.coq-version}"; - installFlags = "COQLIB=$(out)/lib/coq/${coq.coq-version}/"; - - meta = with stdenv.lib; { - homepage = http://ssr.msr-inria.inria.fr/; - license = licenses.cecill-b; - maintainers = [ maintainers.vbgl maintainers.jwiegley ]; - platforms = coq.meta.platforms; - hydraPlatforms = []; - }; +in +callPackage ./generic.nix { + inherit src; } diff --git a/pkgs/development/coq-modules/mathcomp/generic.nix b/pkgs/development/coq-modules/mathcomp/generic.nix new file mode 100644 index 000000000000..56838734b6d3 --- /dev/null +++ b/pkgs/development/coq-modules/mathcomp/generic.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchurl, coq, ssreflect +, graphviz, ocamlPackages, withDoc ? true +, src +}: + +stdenv.mkDerivation { + + name = "coq-mathcomp-1.5-${coq.coq-version}"; + + inherit src; + + nativeBuildInputs = stdenv.lib.optionals withDoc + ([ graphviz ] ++ (with ocamlPackages; [ ocaml camlp5_transitional ])); + propagatedBuildInputs = [ ssreflect ]; + + enableParallelBuilding = true; + + buildFlags = stdenv.lib.optionalString withDoc "doc"; + + installFlags = "COQLIB=$(out)/lib/coq/${coq.coq-version}/"; + + postInstall = stdenv.lib.optionalString withDoc '' + make -f Makefile.coq install-doc DOCDIR=$out/share/coq/${coq.coq-version}/ + ''; + + meta = with stdenv.lib; { + homepage = http://ssr.msr-inria.inria.fr/; + license = licenses.cecill-b; + maintainers = [ maintainers.vbgl maintainers.jwiegley ]; + platforms = coq.meta.platforms; + }; + +} diff --git a/pkgs/development/coq-modules/ssreflect/default.nix b/pkgs/development/coq-modules/ssreflect/default.nix index 75112ec96639..a0b0d951c0df 100644 --- a/pkgs/development/coq-modules/ssreflect/default.nix +++ b/pkgs/development/coq-modules/ssreflect/default.nix @@ -1,40 +1,27 @@ -{stdenv, fetchurl, coq}: +{ callPackage, fetchurl, coq }: -assert coq.coq-version == "8.4"; +if coq.coq-version == "8.4" then -stdenv.mkDerivation { - - name = "coq-ssreflect-1.5"; +callPackage ./generic.nix { src = fetchurl { url = http://ssr.msr-inria.inria.fr/FTP/ssreflect-1.5.tar.gz; sha256 = "0hm1ha7sxqfqhc7iwhx6zdz3nki4rj5nfd3ab24hmz8v7mlpinds"; }; - buildInputs = [ coq.ocaml coq.camlp5 ]; - propagatedBuildInputs = [ coq ]; - - enableParallelBuilding = true; - - patchPhase = '' - # Permit building of the ssrcoq statically-bound executable - sed -i 's/^#-custom/-custom/' Make - sed -i 's/^#SSRCOQ/SSRCOQ/' Make - ''; +} - installFlags = "COQLIB=$(out)/lib/coq/${coq.coq-version}/"; +else if coq.coq-version == "8.5" then - postInstall = '' - mkdir -p $out/bin - cp -p bin/ssrcoq $out/bin - cp -p bin/ssrcoq.byte $out/bin - ''; +callPackage ./generic.nix { - meta = with stdenv.lib; { - homepage = http://ssr.msr-inria.inria.fr/; - license = licenses.cecill-b; - maintainers = with maintainers; [ vbgl jwiegley ]; - platforms = coq.meta.platforms; + src = fetchurl { + url = http://ssr.msr-inria.inria.fr/FTP/ssreflect-1.5.coq85beta2.tar.gz; + sha256 = "084l9xd5vgb8jml0dkm66g8cil5rsf04w821pjhn2qk9mdbwaagf"; }; + patches = [ ./threads.patch ]; + } + +else throw "No ssreflect package for Coq version ${coq.coq-version}" diff --git a/pkgs/development/coq-modules/ssreflect/1.5.nix b/pkgs/development/coq-modules/ssreflect/generic.nix index 7c16b43ba8cb..e208f1cc25a8 100644 --- a/pkgs/development/coq-modules/ssreflect/1.5.nix +++ b/pkgs/development/coq-modules/ssreflect/generic.nix @@ -1,22 +1,21 @@ -{stdenv, fetchurl, coq}: - -assert coq.coq-version == "8.5"; +{ stdenv, fetchurl, coq +, graphviz, withDoc ? true +, src, patches ? [] +}: stdenv.mkDerivation { - name = "coq-ssreflect-1.5-8.5b2"; + name = "coq-ssreflect-1.5-${coq.coq-version}"; - src = fetchurl { - url = http://ssr.msr-inria.inria.fr/FTP/ssreflect-1.5.coq85beta2.tar.gz; - sha256 = "084l9xd5vgb8jml0dkm66g8cil5rsf04w821pjhn2qk9mdbwaagf"; - }; + inherit src; + nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ]; buildInputs = [ coq.ocaml coq.camlp5 ]; propagatedBuildInputs = [ coq ]; enableParallelBuilding = true; - patches = [ ./threads.patch ]; + inherit patches; postPatch = '' # Permit building of the ssrcoq statically-bound executable @@ -24,12 +23,17 @@ stdenv.mkDerivation { sed -i 's/^#SSRCOQ/SSRCOQ/' Make ''; + buildFlags = stdenv.lib.optionalString withDoc "doc"; + installFlags = "COQLIB=$(out)/lib/coq/${coq.coq-version}/"; postInstall = '' mkdir -p $out/bin cp -p bin/ssrcoq $out/bin cp -p bin/ssrcoq.byte $out/bin + '' + stdenv.lib.optionalString withDoc '' + mkdir -p $out/share/doc/coq/${coq.coq-version}/user-contrib/Ssreflect/ + cp -r html $out/share/doc/coq/${coq.coq-version}/user-contrib/Ssreflect/ ''; meta = with stdenv.lib; { diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 8ee927f6fb88..751e0fb4825b 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -7,8 +7,8 @@ self: super: { # Some packages need a non-core version of Cabal. Cabal_1_18_1_6 = dontCheck super.Cabal_1_18_1_6; Cabal_1_20_0_3 = dontCheck super.Cabal_1_20_0_3; - Cabal_1_22_3_0 = dontCheck super.Cabal_1_22_3_0; - cabal-install = (dontCheck super.cabal-install).overrideScope (self: super: { Cabal = self.Cabal_1_22_3_0; zlib = self.zlib_0_5_4_2; }); + Cabal_1_22_4_0 = dontCheck super.Cabal_1_22_4_0; + cabal-install = (dontCheck super.cabal-install).overrideScope (self: super: { Cabal = self.Cabal_1_22_4_0; zlib = self.zlib_0_5_4_2; }); cabal-install_1_18_1_0 = (dontCheck super.cabal-install_1_18_1_0).overrideScope (self: super: { Cabal = self.Cabal_1_18_1_6; zlib = self.zlib_0_5_4_2; }); # Break infinite recursions. @@ -119,6 +119,22 @@ self: super: { # Help libconfig find it's C language counterpart. libconfig = (dontCheck super.libconfig).override { config = pkgs.libconfig; }; + hmatrix = overrideCabal super.hmatrix (drv: { + configureFlags = (drv.configureFlags or []) ++ [ "-fopenblas" ]; + extraLibraries = [ pkgs.openblasCompat ]; + preConfigure = '' + sed -i hmatrix.cabal -e 's@/usr/lib/openblas/lib@${pkgs.openblasCompat}/lib@' + ''; + }); + + bindings-levmar = overrideCabal super.bindings-levmar (drv: { + preConfigure = '' + sed -i bindings-levmar.cabal \ + -e 's,extra-libraries: lapack blas,extra-libraries: openblas,' + ''; + extraLibraries = [ pkgs.openblasCompat ]; + }); + # The Haddock phase fails for one reason or another. attoparsec-conduit = dontHaddock super.attoparsec-conduit; base-noprelude = dontHaddock super.base-noprelude; @@ -150,6 +166,7 @@ self: super: { types-compat = dontHaddock super.types-compat; # https://github.com/philopon/apiary/issues/15 wai-test = dontHaddock super.wai-test; zlib-conduit = dontHaddock super.zlib-conduit; + record = dontHaddock super.record; # https://github.com/nikita-volkov/record/issues/22 # Jailbreak doesn't get the job done because the Cabal file uses conditionals a lot. darcs = (overrideCabal super.darcs (drv: { @@ -286,6 +303,7 @@ self: super: { users-postgresql-simple = dontCheck super.users-postgresql-simple; wai-middleware-hmac = dontCheck super.wai-middleware-hmac; wai-middleware-throttle = dontCheck super.wai-middleware-throttle; # https://github.com/creichert/wai-middleware-throttle/issues/1 + xkbcommon = dontCheck super.xkbcommon; xmlgen = dontCheck super.xmlgen; # These packages try to access the network. @@ -293,6 +311,7 @@ self: super: { amqp-conduit = dontCheck super.amqp-conduit; bitcoin-api = dontCheck super.bitcoin-api; bitcoin-api-extra = dontCheck super.bitcoin-api-extra; + bitx-bitcoin = dontCheck super.bitx-bitcoin; # http://hydra.cryp.to/build/926187/log/raw concurrent-dns-cache = dontCheck super.concurrent-dns-cache; dbus = dontCheck super.dbus; # http://hydra.cryp.to/build/498404/log/raw hadoop-rpc = dontCheck super.hadoop-rpc; # http://hydra.cryp.to/build/527461/nixlog/2/raw @@ -305,6 +324,7 @@ self: super: { marmalade-upload = dontCheck super.marmalade-upload; # http://hydra.cryp.to/build/501904/nixlog/1/raw network-transport-tcp = dontCheck super.network-transport-tcp; network-transport-zeromq = dontCheck super.network-transport-zeromq; # https://github.com/tweag/network-transport-zeromq/issues/30 + pipes-mongodb = dontCheck super.pipes-mongodb; # http://hydra.cryp.to/build/926195/log/raw raven-haskell = dontCheck super.raven-haskell; # http://hydra.cryp.to/build/502053/log/raw riak = dontCheck super.riak; # http://hydra.cryp.to/build/498763/log/raw scotty-binding-play = dontCheck super.scotty-binding-play; @@ -315,6 +335,7 @@ self: super: { wreq = dontCheck super.wreq; # http://hydra.cryp.to/build/501895/nixlog/1/raw wreq-sb = dontCheck super.wreq-sb; # http://hydra.cryp.to/build/783948/log/raw wuss = dontCheck super.wuss; # http://hydra.cryp.to/build/875964/nixlog/2/raw + serversession-backend-redis = dontCheck super.serversession-backend-redis; # https://github.com/NICTA/digit/issues/3 digit = dontCheck super.digit; @@ -758,7 +779,7 @@ self: super: { dyre = appendPatch super.dyre ./dyre-nix.patch; # https://github.com/gwern/mueval/issues/9 - mueval = markBrokenVersion "0.9.1.1" super.mueval; + mueval = appendPatch (appendPatch super.mueval ./mueval-fix.patch) ./mueval-nix.patch; # Test suite won't compile against tasty-hunit 0.9.x. zlib = dontCheck super.zlib; @@ -847,4 +868,18 @@ self: super: { # Avoid spurious test suite failures. fft = dontCheck super.fft; + # This package can't be built on non-Windows systems. + Win32 = overrideCabal super.Win32 (drv: { broken = !pkgs.stdenv.isCygwin; }); + inline-c-win32 = dontDistribute super.inline-c-win32; + + # Doesn't work with recent versions of mtl. + cron-compat = markBroken super.cron-compat; + + # https://github.com/yesodweb/serversession/issues/1 + serversession = dontCheck super.serversession; + + # https://github.com/singpolyma/wai-session/issues/8 + wai-session = markBroken super.wai-session; + serversession-frontend-wai = dontDistribute super.serversession-frontend-wai; + } diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix index 335b133f555a..f2e0fb056e71 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix @@ -116,11 +116,6 @@ self: super: { # https://github.com/kazu-yamamoto/unix-time/issues/30 unix-time = dontCheck super.unix-time; - # Until the changes have been pushed to Hackage - mueval = appendPatch super.mueval (pkgs.fetchpatch { - url = "https://github.com/gwern/mueval/commit/c41aa40ed63b74c069d1e4e3caa8c8d890cde960.patch"; - sha256 = "0h1lx4z15imq009k0qmwkn5l3hmigw463ahvwffdnszi2n618kpg"; - }); present = appendPatch super.present (pkgs.fetchpatch { url = "https://github.com/chrisdone/present/commit/6a61f099bf01e2127d0c68f1abe438cd3eaa15f7.patch"; sha256 = "1vn3xm38v2f4lzyzkadvq322f3s2yf8c88v56wpdpzfxmvlzaqr8"; @@ -230,7 +225,6 @@ self: super: { cabal-install_1_18_1_0 = markBroken super.cabal-install_1_18_1_0; containers_0_4_2_1 = markBroken super.containers_0_4_2_1; control-monad-free_0_5_3 = markBroken super.control-monad-free_0_5_3; - equivalence_0_2_5 = markBroken super.equivalence_0_2_5; haddock-api_2_15_0_2 = markBroken super.haddock-api_2_15_0_2; optparse-applicative_0_10_0 = markBroken super.optparse-applicative_0_10_0; QuickCheck_1_2_0_1 = markBroken super.QuickCheck_1_2_0_1; diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix index 556b86f95eb1..63506bad419a 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.2.x.nix @@ -41,7 +41,7 @@ self: super: { transformers = self.transformers_0_4_3_0; # https://github.com/haskell/cabal/issues/2322 - Cabal_1_22_3_0 = super.Cabal_1_22_3_0.override { binary = self.binary_0_7_5_0; process = self.process_1_2_3_0; }; + Cabal_1_22_4_0 = super.Cabal_1_22_4_0.override { binary = self.binary_0_7_5_0; process = self.process_1_2_3_0; }; # Newer versions don't compile. Cabal_1_18_1_6 = dontJailbreak super.Cabal_1_18_1_6; diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix index e012cda2da94..e19a69277dba 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.4.x.nix @@ -38,7 +38,7 @@ self: super: { transformers = self.transformers_0_4_3_0; # https://github.com/haskell/cabal/issues/2322 - Cabal_1_22_3_0 = super.Cabal_1_22_3_0.override { binary = dontCheck self.binary_0_7_5_0; }; + Cabal_1_22_4_0 = super.Cabal_1_22_4_0.override { binary = dontCheck self.binary_0_7_5_0; }; # Avoid inconsistent 'binary' versions from 'text' and 'Cabal'. cabal-install = super.cabal-install.overrideScope (self: super: { binary = dontCheck self.binary_0_7_5_0; }); diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix index 16257dcc17b4..a9e64935fafa 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.6.x.nix @@ -40,7 +40,7 @@ self: super: { xhtml = self.xhtml_3000_2_1; # https://github.com/haskell/cabal/issues/2322 - Cabal_1_22_3_0 = super.Cabal_1_22_3_0.override { binary = dontCheck self.binary_0_7_5_0; }; + Cabal_1_22_4_0 = super.Cabal_1_22_4_0.override { binary = dontCheck self.binary_0_7_5_0; }; # Avoid inconsistent 'binary' versions from 'text' and 'Cabal'. cabal-install = super.cabal-install.overrideScope (self: super: { binary = dontCheck self.binary_0_7_5_0; }); diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix index 4fbb5056837e..9696ccddcc59 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-7.8.x.nix @@ -59,7 +59,6 @@ self: super: { # Newer versions require mtl 2.2.x. mtl-prelude = self.mtl-prelude_1_0_3; - equivalence = super.equivalence_0_2_5; # required by Agda # purescript requires mtl 2.2.x. purescript = overrideCabal (super.purescript.overrideScope (self: super: { diff --git a/pkgs/development/haskell-modules/default.nix b/pkgs/development/haskell-modules/default.nix index 62d74b0ac7d4..04158ae8e9b5 100644 --- a/pkgs/development/haskell-modules/default.nix +++ b/pkgs/development/haskell-modules/default.nix @@ -56,6 +56,7 @@ let ghcWithPackages = pkgs: callPackage ./with-packages-wrapper.nix { inherit (self) llvmPackages; + haskellPackages = self; packages = pkgs self; }; diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index add826cd1399..42ec33178f7d 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -2144,7 +2144,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "Cabal_1_22_3_0" = callPackage + "Cabal_1_22_4_0" = callPackage ({ mkDerivation, array, base, binary, bytestring, containers , deepseq, directory, extensible-exceptions, filepath, HUnit , old-time, pretty, process, QuickCheck, regex-posix @@ -2153,8 +2153,8 @@ self: { }: mkDerivation { pname = "Cabal"; - version = "1.22.3.0"; - sha256 = "15y78hym5yfrchg0lpix80hf41l3c75rda5w1ni8irm593y7il6l"; + version = "1.22.4.0"; + sha256 = "19nwapy5rvsrk8jc75ql5klp8hikzrwd3c5x07nisl73d2r8ssmr"; buildDepends = [ array base binary bytestring containers deepseq directory filepath pretty process time unix @@ -3192,6 +3192,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "DSA" = callPackage + ({ mkDerivation, base, binary, bytestring, crypto-api + , crypto-pubkey-types, DRBG, ghc-prim, HUnit, integer-gmp + , QuickCheck, SHA, tagged, test-framework, test-framework-hunit + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "DSA"; + version = "1"; + sha256 = "0js67dj7dls7ivvdw1hvxc1cw0rl4bvnfip16ygmgwg98344bfwl"; + buildDepends = [ + base binary bytestring crypto-api crypto-pubkey-types ghc-prim + integer-gmp SHA tagged + ]; + testDepends = [ + base binary bytestring crypto-api crypto-pubkey-types DRBG ghc-prim + HUnit integer-gmp QuickCheck SHA tagged test-framework + test-framework-hunit test-framework-quickcheck2 + ]; + description = "Implementation of DSA, based on the description of FIPS 186-4"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "DSH" = callPackage ({ mkDerivation, aeson, algebra-dag, ansi-wl-pprint, base , bytestring, containers, Decimal, dlist, either, hashable, HUnit @@ -5458,6 +5481,18 @@ self: { license = "GPL"; }) {}; + "GiveYouAHead" = callPackage + ({ mkDerivation, base, directory, extra, old-time, process }: + mkDerivation { + pname = "GiveYouAHead"; + version = "0.2.2.0"; + sha256 = "0qq2kiv9rbch4ps9hsxic9ip0c8z92i0v7hq6vc49hmizdj136ch"; + buildDepends = [ base directory extra old-time process ]; + homepage = "https://github.com/Qinka/GiveYouAHead/"; + description = "to auto-do somethings"; + license = stdenv.lib.licenses.mit; + }) {}; + "Glob" = callPackage ({ mkDerivation, base, containers, directory, dlist, filepath , transformers @@ -7628,8 +7663,8 @@ self: { }: mkDerivation { pname = "HandsomeSoup"; - version = "0.4"; - sha256 = "0h760vfqgg40h50ybqpgpzh0skgbggx4xj1zaag3ca6l22950w36"; + version = "0.4.2"; + sha256 = "1yzfrvivvxwlaiqwbjx27rxwq9mmnnpb512vwklzw7nyzg9xmqha"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -10657,9 +10692,9 @@ self: { }: mkDerivation { pname = "Neks"; - version = "0.3.0.0"; - sha256 = "1nqww81d9hdm4d2kgv5k4vhp3wavlpa39vym4x7bddcxg1g5drmv"; - isLibrary = false; + version = "0.4.0.0"; + sha256 = "0xi5d9wvk2xzsn500d61b6mmvwd36fs2n92l5qy4hzhww5lmkrrb"; + isLibrary = true; isExecutable = true; buildDepends = [ base bytestring cereal containers directory hashable messagepack @@ -14088,10 +14123,9 @@ self: { ({ mkDerivation, base, directory, mtl, syb, transformers }: mkDerivation { pname = "Strafunski-StrategyLib"; - version = "5.0.0.7"; - sha256 = "0dsa3zg24rk52zyyh2y13sb0fnh01vwq0y2yybyiy3vkc7pznjvq"; + version = "5.0.0.8"; + sha256 = "09k9lcrrdzj6p7ywagc6mw17g4x9i743np36p4dkdp37q48j0mac"; buildDepends = [ base directory mtl syb transformers ]; - jailbreak = true; description = "Library for strategic programming"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -14442,6 +14476,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "TestExplode" = callPackage + ({ mkDerivation, base, containers, directory, fgl, graphviz + , interpolatedstring-perl6, mtl, process, text + }: + mkDerivation { + pname = "TestExplode"; + version = "0.1.0.0"; + sha256 = "0r4nwzwdila9p05g5y99rp06dbh1k2yl5jsc6yn6dwvxkvvdjcs1"; + buildDepends = [ + base containers directory fgl graphviz interpolatedstring-perl6 mtl + process text + ]; + jailbreak = true; + homepage = "https://github.com/testexplode/testexplode"; + description = "Generates testcases from program-snippets"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "Theora" = callPackage ({ mkDerivation, base, ogg, theora }: mkDerivation { @@ -17348,8 +17400,8 @@ self: { }: mkDerivation { pname = "aeson-better-errors"; - version = "0.7.0.0"; - sha256 = "01kfbbpf0kdjidgiscljg6mx0x4qk89n5jl44lhg52i3ni3wr28x"; + version = "0.8.0"; + sha256 = "1synbykzdkrkdys9xl0y9yarbi7ya0ij62smambi9ndz474ngb95"; buildDepends = [ aeson base bytestring dlist mtl scientific text transformers transformers-compat unordered-containers vector void @@ -17709,8 +17761,8 @@ self: { }: mkDerivation { pname = "agentx"; - version = "0.1.0.5"; - sha256 = "0a6zzn4zv5f1zl10vz1p4iw32s9jd605px4ziy5v24fmjm5xnbzb"; + version = "0.2.0.0"; + sha256 = "0pmnrij90xag46af4c5yws5g26pf77l5ck864f4cyw5g9acw67g6"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -17873,8 +17925,8 @@ self: { }: mkDerivation { pname = "aivika-experiment"; - version = "3.1"; - sha256 = "19x4y060r9cgkfffyxdgilmrrjv4ycpxv6w8gclkfrxj1ywwkwx4"; + version = "4.0.3"; + sha256 = "1v0x37kmav87b3mxvribw6658glf5hbk7npipkabp1qbfz5sp7zv"; buildDepends = [ aivika base containers directory filepath mtl network-uri parallel-io split @@ -17907,8 +17959,8 @@ self: { }: mkDerivation { pname = "aivika-experiment-chart"; - version = "3.1"; - sha256 = "17bp7bp3x7z3xlzd6922mjm44v8jlkw1ak3zfr31146hlifgfhyw"; + version = "4.0.3"; + sha256 = "1c5xzp0n67fg799cdf6aqc7sxbv3dy6nkiilyc5hlr8bg3r20bpd"; buildDepends = [ aivika aivika-experiment array base Chart colour containers data-default-class filepath lens mtl split @@ -17978,11 +18030,11 @@ self: { ({ mkDerivation, base, c2hs, mtl, openal }: mkDerivation { pname = "al"; - version = "0.1.3.1"; - sha256 = "1p6l64p52d0sznzkig1jczwfqs8wfx22ic40kfpai8icqx357v08"; + version = "0.1.3.2"; + sha256 = "0hjxcgblzcx4nfckyr7p0lfxr5csx5d96gcrbrmh0fbdddz1nqpc"; buildDepends = [ base mtl ]; buildTools = [ c2hs ]; - extraLibraries = [ openal ]; + pkgconfigDepends = [ openal ]; homepage = "http://github.com/phaazon/al"; description = "OpenAL 1.1 raw API."; license = stdenv.lib.licenses.bsd3; @@ -19352,8 +19404,8 @@ self: { }: mkDerivation { pname = "angel"; - version = "0.5.2"; - sha256 = "0h2nyxv56cshkxlbq5j54220w7x2y0m1aaqzqz6dhipff29pmr39"; + version = "0.6.1"; + sha256 = "1wkllv4ziggj3smhghdk5qsgccds9d69rhx1gi079ph7z533w2dc"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -19767,7 +19819,9 @@ self: { mkDerivation { pname = "apiary"; version = "1.4.3"; + revision = "1"; sha256 = "1z6fgdkn3k4sbwk5jyz6yp9qwllhv2m9vq7z25fhmj41y3spgcsc"; + editedCabalFile = "024867d05ec04c0b83c41e948b80c56686cc170beed600daffa8d8c725e50a32"; buildDepends = [ base blaze-builder blaze-html blaze-markup bytestring bytestring-read case-insensitive data-default-class exceptions @@ -19780,7 +19834,6 @@ self: { base bytestring http-types HUnit mtl tasty tasty-hunit tasty-quickcheck wai wai-extra ]; - jailbreak = true; homepage = "https://github.com/philopon/apiary"; description = "Simple and type safe web framework that generate web API documentation"; license = stdenv.lib.licenses.mit; @@ -19835,14 +19888,13 @@ self: { mkDerivation { pname = "apiary-cookie"; version = "1.4.0"; - revision = "1"; + revision = "2"; sha256 = "017bxqavv4w5r2ghgmyhljqa4fyzl02v2sjwxi056s3phgrlrkrx"; - editedCabalFile = "50b9adcb346e7233cb73eef7e7d00902a7b43454ab998f76923582bada569e32"; + editedCabalFile = "4edecbd2a1e6fb740815be85cc9c4836144338af88e6774348a1703e861a9771"; buildDepends = [ apiary base blaze-builder blaze-html bytestring cookie time types-compat wai web-routing ]; - jailbreak = true; homepage = "https://github.com/philopon/apiary"; description = "Cookie support for apiary web framework"; license = stdenv.lib.licenses.mit; @@ -19891,15 +19943,14 @@ self: { mkDerivation { pname = "apiary-logger"; version = "1.4.0"; - revision = "1"; + revision = "2"; sha256 = "0pf030sn4mf05avl11hs9kz6qi9667s2vavn3wsxp1anl9bghk48"; - editedCabalFile = "cb2677faabb41ccf7a4990179990f55c14d5bcd517591ccd086b84c68362c93c"; + editedCabalFile = "ce71ccd5e0a1f20777b17efdc536aab8f43a3468f54fa14609c635aa731ce944"; buildDepends = [ apiary base data-default-class fast-logger lifted-base monad-control monad-logger transformers transformers-base types-compat ]; - jailbreak = true; homepage = "https://github.com/philopon/apiary"; description = "fast-logger support for apiary web framework"; license = stdenv.lib.licenses.mit; @@ -20067,6 +20118,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "app-lens" = callPackage + ({ mkDerivation, base, containers, lens, mtl }: + mkDerivation { + pname = "app-lens"; + version = "0.1.0.0"; + revision = "1"; + sha256 = "0gizjnc7x1ggryfrm4d87xiyjz9yw6c5y3zp23x40bgmw49zl318"; + editedCabalFile = "a143bd5aec7a06285e0ef56e76f31e0d8b69f277da57ce4d88a7688355ca86a6"; + buildDepends = [ base containers lens mtl ]; + jailbreak = true; + homepage = "https://bitbucket.org/kztk/app-lens"; + description = "applicative (functional) bidirectional programming beyond composition chains"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "app-settings" = callPackage ({ mkDerivation, base, containers, directory, hspec, HUnit, mtl , parsec, text @@ -21675,6 +21742,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "attoparsec-trans" = callPackage + ({ mkDerivation, attoparsec, base, transformers }: + mkDerivation { + pname = "attoparsec-trans"; + version = "0.1.1.0"; + sha256 = "0lsbl7hhirr13jmn6fc4g5443j73p4rxjgxvv967n5dsp7xrjaa7"; + buildDepends = [ attoparsec base transformers ]; + homepage = "https://github.com/srijs/haskell-attoparsec-trans"; + description = "Interleaved effects for attoparsec parsers"; + license = stdenv.lib.licenses.mit; + }) {}; + "attosplit" = callPackage ({ mkDerivation, attoparsec, base, bytestring }: mkDerivation { @@ -22160,6 +22239,24 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "aws-dynamodb-conduit" = callPackage + ({ mkDerivation, aeson, attoparsec-trans, aws, base, bytestring + , conduit, containers, http-conduit, http-types, json-togo + , resourcet, text, transformers + }: + mkDerivation { + pname = "aws-dynamodb-conduit"; + version = "0.1.0.5"; + sha256 = "1s1dxk0489vnb0v6kr0b74265cc0ih84pm80ajg8111blabx8kgf"; + buildDepends = [ + aeson attoparsec-trans aws base bytestring conduit containers + http-conduit http-types json-togo resourcet text transformers + ]; + homepage = "https://github.com/srijs/haskell-aws-dynamodb-query"; + description = "Conduit-based interface for AWS DynamoDB"; + license = stdenv.lib.licenses.mit; + }) {}; + "aws-dynamodb-streams" = callPackage ({ mkDerivation, aeson, attoparsec, aws, aws-general, base , base-unicode-symbols, base16-bytestring, base64-bytestring @@ -23330,8 +23427,8 @@ self: { }: mkDerivation { pname = "basic-prelude"; - version = "0.4.1"; - sha256 = "041wnym7b8p70kcbkxxbgszmi2y88xs0ww357jrn0v6cc21h60j9"; + version = "0.5.0"; + sha256 = "1l8hc99sxm27gd93zq6v0l0x2rzl6fd9zp7snh14m4yriqrn5xfi"; buildDepends = [ base bytestring containers filepath hashable lifted-base ReadArgs safe text transformers unordered-containers vector @@ -23763,8 +23860,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "between"; - version = "0.9.0.2"; - sha256 = "0n3nx077hv10rwv2kl3n1a3v40sr1qzfj9jwb6cvd1l0zx42igw8"; + version = "0.10.0.0"; + sha256 = "10bj4v2451c9dri3r9c825xnr4lb8jhihr05nhc6m8fdvqnyqvsi"; buildDepends = [ base ]; homepage = "https://github.com/trskop/between"; description = "Function combinator \"between\" and derived combinators"; @@ -25018,6 +25115,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "bindings-potrace" = callPackage + ({ mkDerivation, base, bindings-DSL, potrace }: + mkDerivation { + pname = "bindings-potrace"; + version = "0.1"; + sha256 = "0vb889f49li0lwy3zsji0f1cwzriizh9x6kg3r8676q5j08p7znd"; + buildDepends = [ base bindings-DSL ]; + extraLibraries = [ potrace ]; + homepage = "https://github.com/rwbarton/bindings-potrace"; + description = "Low-level bindings to the potrace bitmap tracing library"; + license = stdenv.lib.licenses.gpl2; + }) { inherit (pkgs) potrace;}; + "bindings-ppdev" = callPackage ({ mkDerivation, base, bindings-DSL, ioctl }: mkDerivation { @@ -25035,8 +25145,8 @@ self: { }: mkDerivation { pname = "bindings-saga-cmd"; - version = "0.1.1.0"; - sha256 = "1vv3cx3g3zvrg6xb355b98qxxxf621scqbzaaq45dvfzq9kvclwi"; + version = "0.1.1.1"; + sha256 = "11k56zsz1fg0hb0pqamq2hh3gczzqgj105qss5xrk0cgmsphhbmy"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -25415,8 +25525,8 @@ self: { }: mkDerivation { pname = "bitcoin-api"; - version = "0.12.0"; - sha256 = "09sh56wmkkgm0gzsai94q1qa2dlf1s7nfxl0yzim0s10p71bw7wr"; + version = "0.12.1"; + sha256 = "0c1ydggik4k3vj93bqk53privyblkwhd32jizw25qk5j34axwy69"; buildDepends = [ aeson base base58string binary bitcoin-block bitcoin-script bitcoin-tx bitcoin-types bytestring hexstring lens lens-aeson text @@ -25797,20 +25907,23 @@ self: { }) {}; "bitx-bitcoin" = callPackage - ({ mkDerivation, aeson, base, bytestring, Decimal, hspec - , http-conduit, network, record, split, text, time + ({ mkDerivation, aeson, base, bytestring, hspec, http-conduit + , network, record, scientific, split, text, time }: mkDerivation { pname = "bitx-bitcoin"; - version = "0.1.0.0"; - sha256 = "05k2cwkd9y327c75fhjqwyxhwrwxhalsx724xa0ng5dw3d30icc2"; + version = "0.2.0.1"; + sha256 = "0lg6zmyf299gh8921qxm2xxqv8hsz4p2rpslfcsic5k4bqm2nswg"; buildDepends = [ - aeson base bytestring Decimal http-conduit network record split + aeson base bytestring http-conduit network record scientific split text time ]; testDepends = [ aeson base bytestring hspec record time ]; + jailbreak = true; + homepage = "https://github.com/tebello-thejane/bitx-haskell"; description = "A Haskell library for working with the BitX bitcoin exchange"; license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "bk-tree" = callPackage @@ -26847,6 +26960,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "break" = callPackage + ({ mkDerivation, base, mtl, transformers }: + mkDerivation { + pname = "break"; + version = "1.0.0"; + sha256 = "15fqdha71i4ziv0ra8v2mfp0fviwgs27xlsvc0chb8icqf33y22m"; + buildDepends = [ base mtl transformers ]; + description = "Break from a loop"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "breakout" = callPackage ({ mkDerivation, base, haskgame, mtl, SDL }: mkDerivation { @@ -27691,8 +27815,8 @@ self: { }: mkDerivation { pname = "bytestring-read"; - version = "0.3.0"; - sha256 = "19bq478066chy35fnfjq5bg2f196zl6qi2dssqwlr9bivgvk434g"; + version = "0.3.1"; + sha256 = "0df6mb5fhfd1kgah5gv4q4ykxvl0y8hbqrdvm17nh33cxj2csj00"; buildDepends = [ base bytestring types-compat ]; testDepends = [ base bytestring doctest tasty tasty-quickcheck ]; jailbreak = true; @@ -27988,8 +28112,8 @@ self: { }: mkDerivation { pname = "cabal-bounds"; - version = "0.9.3"; - sha256 = "0r8ayxsfx7z4hivknshj2sybssn3hjwprxpyqw4yv3w26gv7d82j"; + version = "0.9.4"; + sha256 = "1l1nqf8878kmmdc5ssrpn52cszn9w0ym70pjjbaprpa1c7mdbziy"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -28257,8 +28381,8 @@ self: { }: mkDerivation { pname = "cabal-install"; - version = "1.22.4.0"; - sha256 = "0qwgs01jd6k03zk67gbydhqkdgsb4wzqylxywz4samkmdilagiw0"; + version = "1.22.6.0"; + sha256 = "1d5h7h2wjwc2s3dvsvzjgmmfrfl2312ym2h6kyjgm9wnaqw9w8wx"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -29580,6 +29704,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "cased" = callPackage + ({ mkDerivation, base, text }: + mkDerivation { + pname = "cased"; + version = "0.1.0.0"; + sha256 = "08xdc0mpp6b6inaxh6cr6ni08sy2ahfcbq8xbs3m4cfqbrqfd543"; + buildDepends = [ base text ]; + homepage = "https://github.com/jb55/cased"; + description = "Track string casing in its type"; + license = stdenv.lib.licenses.mit; + }) {}; + "cases" = callPackage ({ mkDerivation, attoparsec, base, base-prelude, HTF, HUnit , loch-th, placeholders, QuickCheck, text @@ -30191,8 +30327,8 @@ self: { }: mkDerivation { pname = "cf"; - version = "0.3"; - sha256 = "06r289lb3aq9wh2xggpg7pbxf60wkz1fmdy7ibyawa1sxpprrs07"; + version = "0.4"; + sha256 = "172nm38gvjriznnyks958bfzwd2zy59662i6zjzvj3nr0kdkiiap"; buildDepends = [ base ]; testDepends = [ base QuickCheck test-framework test-framework-quickcheck2 @@ -30565,31 +30701,28 @@ self: { "chatter" = callPackage ({ mkDerivation, array, base, bytestring, cereal, containers - , deepseq, directory, filepath, fullstop, ghc-prim, HUnit, mbox - , MonadRandom, parsec, QuickCheck, quickcheck-instances - , random-shuffle, regex-base, regex-tdfa, regex-tdfa-text, safe - , split, test-framework, test-framework-hunit - , test-framework-quickcheck2, test-framework-skip, text, tokenize - , transformers, zlib + , deepseq, directory, filepath, fullstop, HUnit, mbox, MonadRandom + , parsec, QuickCheck, quickcheck-instances, random-shuffle + , regex-tdfa, regex-tdfa-text, tasty, tasty-ant-xml, tasty-hunit + , tasty-quickcheck, text, tokenize, transformers, zlib }: mkDerivation { pname = "chatter"; - version = "0.5.0.1"; - sha256 = "0saavfnxd6l6w3ybvdmi14ia06ssc4lndb0ba8hhyqb3qzz7l7zs"; + version = "0.5.1.0"; + sha256 = "014palhzpphwq3q1c211xajl30afr4ac6mjcpvyzqwxdr9ia74c8"; isLibrary = true; isExecutable = true; buildDepends = [ array base bytestring cereal containers deepseq directory filepath - fullstop ghc-prim mbox MonadRandom parsec QuickCheck - quickcheck-instances random-shuffle regex-base regex-tdfa - regex-tdfa-text safe split text tokenize transformers zlib + fullstop mbox MonadRandom parsec QuickCheck quickcheck-instances + random-shuffle regex-tdfa regex-tdfa-text text tokenize + transformers zlib ]; testDepends = [ base cereal containers filepath HUnit parsec QuickCheck - quickcheck-instances test-framework test-framework-hunit - test-framework-quickcheck2 test-framework-skip text tokenize + quickcheck-instances tasty tasty-ant-xml tasty-hunit + tasty-quickcheck text tokenize ]; - jailbreak = true; homepage = "http://github.com/creswick/chatter"; description = "A library of simple NLP algorithms"; license = stdenv.lib.licenses.bsd3; @@ -31585,8 +31718,8 @@ self: { }: mkDerivation { pname = "classy-prelude"; - version = "0.12.0"; - sha256 = "0g72084wnfqam0djpck76bb7dmphpjs1h32w361cqyvgxkyy1prw"; + version = "0.12.0.1"; + sha256 = "0ny5cxkzbjhhsmypsp4sjm7nm0jv2l2kysgcphm6j1l3dr0ck6il"; buildDepends = [ base basic-prelude bifunctors bytestring chunked-data containers dlist enclosed-exceptions exceptions ghc-prim hashable lifted-base @@ -32724,8 +32857,8 @@ self: { }: mkDerivation { pname = "codex"; - version = "0.3.0.6"; - sha256 = "1slgh54kvf01y991pqi51kj6lfq05l5gp8dkhwcya1l9gilfazr4"; + version = "0.3.0.8"; + sha256 = "1jlrap3qhgnsgdmp0nb2hf3bbjlajp6p4z2q2rl70l93v0v9xi02"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -32734,7 +32867,6 @@ self: { MissingH monad-loops network process tar text transformers wreq yaml zlib ]; - jailbreak = true; homepage = "http://github.com/aloiscochard/codex"; description = "A ctags file generator for cabal project dependencies"; license = stdenv.lib.licenses.asl20; @@ -32800,8 +32932,8 @@ self: { }: mkDerivation { pname = "coinbase-exchange"; - version = "0.1.0.0"; - sha256 = "0l09gjn0lk7v51s1gw52p0m9i8amhci93qpi98p1r1nlxx09xj3v"; + version = "0.2.0.0"; + sha256 = "1x9cgdj38z1zhrx464rj3qhh8rxqs98mfpqfsnn5yill037p1ig8"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -32815,7 +32947,6 @@ self: { base bytestring http-client-tls http-conduit old-locale tasty tasty-hunit tasty-quickcheck tasty-th time transformers uuid ]; - jailbreak = true; description = "Connector library for the coinbase exchange"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -34152,8 +34283,8 @@ self: { }: mkDerivation { pname = "conduit-combinators"; - version = "1.0.0"; - sha256 = "1ibbj3ipkys26np9d791ynpfzgrw3miclcj02bb0ipmvqngm90hv"; + version = "1.0.1"; + sha256 = "014n3qhn9flwj43zjp62vagp5df9ll6nkjk1x9qpagni1vf9cbqq"; buildDepends = [ base base16-bytestring base64-bytestring bytestring chunked-data conduit conduit-extra filepath monad-control mono-traversable @@ -34526,13 +34657,12 @@ self: { }: mkDerivation { pname = "connection-pool"; - version = "0.1.1.0"; - sha256 = "08mfl5gwbxzkf6dvqvshmzpjy02f46avimw8ss66br2397bi0qj7"; + version = "0.1.2.0"; + sha256 = "12nr9vl884yj4yq9dyfc725zi6dw0amp65xlm9hjm7wffz6mc5az"; buildDepends = [ base between data-default-class monad-control network resource-pool streaming-commons time transformers-base ]; - jailbreak = true; homepage = "https://github.com/trskop/connection-pool"; description = "Connection pool built on top of resource-pool and streaming-commons"; license = stdenv.lib.licenses.bsd3; @@ -35723,21 +35853,6 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "cpphs_1_18_9" = callPackage - ({ mkDerivation, base, directory, old-locale, old-time, polyparse - }: - mkDerivation { - pname = "cpphs"; - version = "1.18.9"; - sha256 = "0bf9p5izkag6iqlpf59znsv8107hg1xghgas4crw2gxai1z7bfq6"; - isLibrary = true; - isExecutable = true; - buildDepends = [ base directory old-locale old-time polyparse ]; - homepage = "http://projects.haskell.org/cpphs/"; - description = "A liberalised re-implementation of cpp, the C pre-processor"; - license = "LGPL"; - }) {}; - "cpphs" = callPackage ({ mkDerivation, base, directory, old-locale, old-time, polyparse }: @@ -36384,17 +36499,19 @@ self: { "cron" = callPackage ({ mkDerivation, attoparsec, base, derive, hspec - , hspec-expectations, mtl, old-locale, QuickCheck, text, time - , transformers + , hspec-expectations, mtl, mtl-compat, old-locale, QuickCheck, text + , time, transformers-compat }: mkDerivation { pname = "cron"; - version = "0.2.6"; - sha256 = "1klxhk12c08ig7n8n8drnvqmggfghr8i9j5bfhakj58bk1x8xfvg"; - buildDepends = [ attoparsec base mtl old-locale text time ]; + version = "0.3.0"; + sha256 = "18yadf94bzyhm5nab6lc8zagp39yv5k8cjjakhaxncgipcm30s9k"; + buildDepends = [ + attoparsec base mtl mtl-compat old-locale text time + ]; testDepends = [ attoparsec base derive hspec hspec-expectations QuickCheck text - time transformers + time transformers-compat ]; homepage = "http://github.com/michaelxavier/cron"; description = "Cron datatypes and Attoparsec parser"; @@ -36402,6 +36519,29 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "cron-compat" = callPackage + ({ mkDerivation, attoparsec, base, cron, derive, hspec + , hspec-expectations, mtl, mtl-compat, old-locale, QuickCheck, text + , time, transformers, transformers-compat + }: + mkDerivation { + pname = "cron-compat"; + version = "0.2.6"; + sha256 = "0km70j3xfqvpra9mvbxpvpqd7arjjfcpazmilvmj6kjxk6cw7pfx"; + buildDepends = [ + attoparsec base mtl mtl-compat old-locale text time + transformers-compat + ]; + testDepends = [ + attoparsec base cron derive hspec hspec-expectations QuickCheck + text time transformers + ]; + jailbreak = true; + homepage = "http://github.com/michaelxavier/cron"; + description = "Cron datatypes and Attoparsec parser"; + license = stdenv.lib.licenses.mit; + }) {}; + "cruncher-types" = callPackage ({ mkDerivation, aeson, base, containers, hlint, lens, text }: mkDerivation { @@ -38404,18 +38544,18 @@ self: { }) {}; "data-easy" = callPackage - ({ mkDerivation, base, containers, directory, either, errors + ({ mkDerivation, base, containers, directory, errors , haskell-src-exts, hlint, hspec, HUnit, QuickCheck, safe, text , transformers, unix }: mkDerivation { pname = "data-easy"; - version = "0.5"; - sha256 = "1rrq20v1nzkmak1m7x3gpcn262h26y4mcx058g8dp413gvdniypq"; + version = "0.6"; + sha256 = "1gqc7833lz3n1mqah4mall1m32slz79hifp8381p1qdj2hkirypc"; buildDepends = [ base containers safe ]; testDepends = [ - base containers directory either errors haskell-src-exts hlint - hspec HUnit QuickCheck safe text transformers unix + base containers directory errors haskell-src-exts hlint hspec HUnit + QuickCheck safe text transformers unix ]; jailbreak = true; homepage = "https://github.com/jcristovao/easy-data"; @@ -38482,6 +38622,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "data-fin-simple" = callPackage + ({ mkDerivation, base, doctest }: + mkDerivation { + pname = "data-fin-simple"; + version = "0.1.0.0"; + sha256 = "17qj3b3lkrakdk3vbs9nqc2pvqr81n43qxphcznfbkv91k1ygrp6"; + buildDepends = [ base ]; + testDepends = [ base doctest ]; + homepage = "https://github.com/seagull-kamome/data-fin-simple"; + description = "Simple integral finite set"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "data-fix" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -39873,8 +40026,8 @@ self: { }: mkDerivation { pname = "debian-build"; - version = "0.7.1.0"; - sha256 = "0hzvv6aazpf7r75yygcqy1ldz3j9shs6spv71nzn040rny67cdll"; + version = "0.7.1.1"; + sha256 = "0r2f14h0bpbq861jfa0rgp0y87nq142f80dyjzyzzrdwc8szj120"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -40334,6 +40487,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "delta" = callPackage + ({ mkDerivation, base, containers, directory, filepath, fs-events + , sodium, time + }: + mkDerivation { + pname = "delta"; + version = "0.1.0.1"; + sha256 = "0kjii2hqwzzsb8i09547y0qxrdak3xkhgv7dqahbpypzh8hldgzf"; + isLibrary = true; + isExecutable = true; + buildDepends = [ + base containers directory filepath fs-events sodium time + ]; + homepage = "https://github.com/kryoxide/delta"; + description = "A library for detecting file changes"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "delta-h" = callPackage ({ mkDerivation, base, binary, bytestring, containers, monad-atom , nlp-scores, text @@ -42055,18 +42227,17 @@ self: { "distributed-process" = callPackage ({ mkDerivation, base, binary, bytestring, containers , data-accessor, deepseq, distributed-static, ghc-prim, hashable - , mtl, network-transport, old-locale, random, rank1dynamic, stm - , syb, template-haskell, time, transformers + , mtl, network-transport, random, rank1dynamic, stm, syb + , template-haskell, time, transformers }: mkDerivation { pname = "distributed-process"; - version = "0.5.4"; - sha256 = "1yx2vspnpa478bn7n82ii6m6x0z43xwbr5995l3mm64sd0nmxp2s"; + version = "0.5.5"; + sha256 = "0w3jwnfc8ca0sx9mshgbxr61pfbnp82ihy3ca5v1pkwz34dqd3f5"; buildDepends = [ base binary bytestring containers data-accessor deepseq - distributed-static ghc-prim hashable mtl network-transport - old-locale random rank1dynamic stm syb template-haskell time - transformers + distributed-static ghc-prim hashable mtl network-transport random + rank1dynamic stm syb template-haskell time transformers ]; jailbreak = true; homepage = "http://haskell-distributed.github.com/"; @@ -42343,8 +42514,8 @@ self: { }: mkDerivation { pname = "distributed-process-simplelocalnet"; - version = "0.2.2.0"; - sha256 = "024m5jycz257i34m2x97x3qyg76j1128ww61pql3fqy4mhvp3791"; + version = "0.2.3.0"; + sha256 = "01871r4cj5zwcv63m95i622h0xxfjnflj33wvpxv1ii5z265rkjy"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -42482,13 +42653,16 @@ self: { }) {}; "distributed-static" = callPackage - ({ mkDerivation, base, binary, bytestring, containers, rank1dynamic + ({ mkDerivation, base, binary, bytestring, containers, deepseq + , rank1dynamic }: mkDerivation { pname = "distributed-static"; - version = "0.3.1.0"; - sha256 = "190b6vjcipgrvnfl72c0ssw8crza02gfw9kwyvwg043jcznihj08"; - buildDepends = [ base binary bytestring containers rank1dynamic ]; + version = "0.3.2.0"; + sha256 = "1zz18lgf39i8anw17qxacb6cicm1kq0yayx9a4inxpnch5xfvg4m"; + buildDepends = [ + base binary bytestring containers deepseq rank1dynamic + ]; homepage = "http://haskell-distributed.github.com"; description = "Compositional, type-safe, polymorphic static values and closures"; license = stdenv.lib.licenses.bsd3; @@ -43197,6 +43371,26 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "dozens" = callPackage + ({ mkDerivation, aeson, base, bytestring, data-default-class + , http-client, http-types, reflection, scientific, text + , transformers + }: + mkDerivation { + pname = "dozens"; + version = "0.1.1"; + revision = "1"; + sha256 = "1hvsdc69ag4x8rp2pzr3cxjfbl4fh9bdj4bwlkfvpr755qdi45ky"; + editedCabalFile = "08e6297d7be6ec753261aa5cb8f265a6ba6c369f44d25f46f9784ae1d8a88e52"; + buildDepends = [ + aeson base bytestring data-default-class http-client http-types + reflection scientific text transformers + ]; + homepage = "https://github.com/philopon/dozens-hs"; + description = "dozens api library"; + license = stdenv.lib.licenses.mit; + }) {}; + "dph-base" = callPackage ({ mkDerivation, array, base, ghc-prim, pretty, random, vector }: mkDerivation { @@ -43485,8 +43679,8 @@ self: { }: mkDerivation { pname = "dsh-sql"; - version = "0.2.0.1"; - sha256 = "0vr9wsad74735py2i2kqwqi4phf49ksw3d4w89jlcgi6xpsc02s1"; + version = "0.2.0.2"; + sha256 = "00r1wbgbkpnza1jjd14vqr4hwgfkhnz7yivkx4bla5frfdlv5q58"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -44375,8 +44569,8 @@ self: { ({ mkDerivation, base, edenmodules, parallel }: mkDerivation { pname = "edenskel"; - version = "2.0.0.2"; - sha256 = "0dkvbdy04w4zbbc3q11hzzg3h5d8azka11yiiz3rvy1nkhp9wv5l"; + version = "2.1.0.0"; + sha256 = "1bf5zw1x4f6a801ig2b8b84kbnmp0asn804gkm18v9fjcchz3j9q"; buildDepends = [ base edenmodules parallel ]; description = "Semi-explicit parallel programming skeleton library"; license = stdenv.lib.licenses.bsd3; @@ -45522,10 +45716,9 @@ self: { ({ mkDerivation, base, between, transformers }: mkDerivation { pname = "endo"; - version = "0.1.0.2"; - sha256 = "1wqg0mcaf55wa70wjgd6n0gw56rghz6p76lc6kw4aki969h12xrl"; + version = "0.2.0.0"; + sha256 = "1gqw14nadw1cb49m251swly35gjkb2xhqi0cqhm17ww8r13mzp31"; buildDepends = [ base between transformers ]; - jailbreak = true; homepage = "https://github.com/trskop/endo"; description = "Endomorphism utilities"; license = stdenv.lib.licenses.bsd3; @@ -45538,14 +45731,13 @@ self: { }: mkDerivation { pname = "engine-io"; - version = "1.2.6"; - sha256 = "1vxbpfldnqrw42vm8c0rqy4b56yig38mca5b83pl79f2z722l3v4"; + version = "1.2.7"; + sha256 = "0giqsx1wknhp5a1dg72wl48j56h38jzc3pw6w8pfhngpc0spl3gf"; buildDepends = [ aeson async attoparsec base base64-bytestring bytestring either free monad-loops mwc-random stm stm-delay text transformers unordered-containers vector websockets ]; - jailbreak = true; homepage = "http://github.com/ocharles/engine.io"; description = "A Haskell implementation of Engine.IO"; license = stdenv.lib.licenses.bsd3; @@ -45619,8 +45811,8 @@ self: { ({ mkDerivation, base, bytestring, unix }: mkDerivation { pname = "entropy"; - version = "0.3.6"; - sha256 = "1sfv930hvdmf018ngdl15jac2bgj75941w0ndlh78n1jgmf04jhn"; + version = "0.3.7"; + sha256 = "1vzg9fi597dbrcbjsr71y47rvmhiih7lg5rjnb297fzdlbmj1w0z"; buildDepends = [ base bytestring unix ]; homepage = "https://github.com/TomMD/entropy"; description = "A platform independent entropy source"; @@ -45989,24 +46181,6 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "equivalence_0_2_5" = callPackage - ({ mkDerivation, base, containers, mtl, QuickCheck, STMonadTrans - , template-haskell, test-framework, test-framework-quickcheck2 - }: - mkDerivation { - pname = "equivalence"; - version = "0.2.5"; - sha256 = "014r9v81r7nj5pynfk3wa4lm4hk04123fgxkhb9a945wi6d9m5h3"; - buildDepends = [ base containers mtl STMonadTrans ]; - testDepends = [ - base containers mtl QuickCheck STMonadTrans template-haskell - test-framework test-framework-quickcheck2 - ]; - homepage = "https://bitbucket.org/paba/equivalence/"; - description = "Maintaining an equivalence relation implemented as union-find using STT"; - license = stdenv.lib.licenses.bsd3; - }) {}; - "equivalence" = callPackage ({ mkDerivation, base, containers, mtl, QuickCheck, STMonadTrans , template-haskell, test-framework, test-framework-quickcheck2 @@ -46160,6 +46334,18 @@ self: { license = stdenv.lib.licenses.publicDomain; }) {}; + "error-list" = callPackage + ({ mkDerivation, base, mtl, text, text-render }: + mkDerivation { + pname = "error-list"; + version = "0.1.0.2"; + sha256 = "1g50wwgs9xxwc03mhch89rcfnj62mpisl8ihw8yy5c3pp0kag2mm"; + buildDepends = [ base mtl text text-render ]; + homepage = "http://github.com/thinkpad20/error-list"; + description = "A useful type for collecting error messages"; + license = stdenv.lib.licenses.mit; + }) {}; + "error-loc" = callPackage ({ mkDerivation, base, template-haskell }: mkDerivation { @@ -46437,6 +46623,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ether" = callPackage + ({ mkDerivation, base, mtl, newtype-generics, QuickCheck, tasty + , tasty-quickcheck, template-haskell, transformers + }: + mkDerivation { + pname = "ether"; + version = "0.2.1.0"; + sha256 = "1iwi3whaxnpwfdghw1rli9dxqh1c28hhxkdvl4wslj0vc014h3di"; + buildDepends = [ + base mtl newtype-generics template-haskell transformers + ]; + testDepends = [ + base mtl QuickCheck tasty tasty-quickcheck transformers + ]; + homepage = "https://int-index.github.io/ether/"; + description = "Monad transformers and classes"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "ethereum-client-haskell" = callPackage ({ mkDerivation, ansi-wl-pprint, array, base, base16-bytestring , binary, bytestring, cmdargs, containers, cryptohash, data-default @@ -46647,13 +46852,12 @@ self: { }: mkDerivation { pname = "eventstore"; - version = "0.7.2.1"; - sha256 = "0zhasybpvmi3f0kb2pipb03jnv4d710gcr6mphszgkj5179wvad2"; + version = "0.8.0.0"; + sha256 = "0p1z7xs3412s2hnv7pc18y1gx65p5hf09038n96vl22kvc9d84ww"; buildDepends = [ aeson async attoparsec base bytestring cereal containers network protobuf random sodium stm text time unordered-containers uuid ]; - jailbreak = true; homepage = "http://github.com/YoEight/eventstore"; description = "EventStore TCP Client"; license = stdenv.lib.licenses.bsd3; @@ -47783,6 +47987,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "fay-geoposition" = callPackage + ({ mkDerivation, fay-base, fay-text }: + mkDerivation { + pname = "fay-geoposition"; + version = "0.1.0.1"; + sha256 = "1qmkwfqgvj6a8fan1l3i18ggpl00vrfd2mhqj13g0gh9yhvgxv1q"; + buildDepends = [ fay-base fay-text ]; + homepage = "https://github.com/victoredwardocallaghan/fay-geoposition"; + description = "W3C compliant implementation of GeoPosition API"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "fay-hsx" = callPackage ({ mkDerivation, fay-base, fay-jquery }: mkDerivation { @@ -48192,17 +48408,25 @@ self: { }) {}; "feldspar-signal" = callPackage - ({ mkDerivation, base }: + ({ mkDerivation, base, base-compat, feldspar-compiler + , feldspar-compiler-shim, feldspar-language, imperative-edsl + , mainland-pretty, monadic-edsl-priv + }: mkDerivation { pname = "feldspar-signal"; - version = "0.0.0.1"; - sha256 = "16brcdnbk4ykribgw5jix7k6qca2rxqms1hnljmirs0b8ldyflgx"; - buildDepends = [ base ]; + version = "0.0.1.0"; + sha256 = "147y0fy5pzagk8pm8way8qnxv42mn5qh8kmzjf02laydzxrwvpxd"; + buildDepends = [ + base base-compat feldspar-compiler feldspar-compiler-shim + feldspar-language imperative-edsl mainland-pretty monadic-edsl-priv + ]; jailbreak = true; homepage = "https://github.com/markus-git/feldspar-signal"; description = "Signal Processing extension for Feldspar"; license = stdenv.lib.licenses.bsd3; - }) {}; + broken = true; + }) { feldspar-compiler-shim = null; imperative-edsl = null; + monadic-edsl-priv = null;}; "fen2s" = callPackage ({ mkDerivation, api-opentheory-unicode, base, opentheory-unicode @@ -48278,19 +48502,19 @@ self: { }) {}; "fficxx" = callPackage - ({ mkDerivation, base, bytestring, Cabal, containers, directory - , either, errors, filepath, hashable, HStringTemplate, lens, mtl - , process, pureMD5, split, template-haskell, transformers - , unordered-containers + ({ mkDerivation, base, bytestring, Cabal, containers, data-default + , directory, either, errors, filepath, hashable, HStringTemplate + , lens, mtl, process, pureMD5, split, template-haskell + , transformers, unordered-containers }: mkDerivation { pname = "fficxx"; - version = "0.2"; - sha256 = "0512v9xhli6qdz46gvn8lj15rp30919pf982fjcgklw22qmci69q"; + version = "0.2.1"; + sha256 = "1vjkwp0krs2762ww7vkl1g0dpaw6ifba7acjndmqbnvm3yl0ha0d"; buildDepends = [ - base bytestring Cabal containers directory either errors filepath - hashable HStringTemplate lens mtl process pureMD5 split - template-haskell transformers unordered-containers + base bytestring Cabal containers data-default directory either + errors filepath hashable HStringTemplate lens mtl process pureMD5 + split template-haskell transformers unordered-containers ]; description = "automatic C++ binding generation"; license = stdenv.lib.licenses.bsd3; @@ -48301,8 +48525,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "fficxx-runtime"; - version = "0.2"; - sha256 = "0czh7in30369c8c4ls3m3r61w6zb1p0p0jy2yi5j9521f61q588a"; + version = "0.2.1"; + sha256 = "0hcpc0db4mh3yx8yzbkllq9b04dd1qvr63ppz2qa9nq5zydb5pxk"; buildDepends = [ base ]; description = "Runtime for fficxx-generated library"; license = stdenv.lib.licenses.bsd3; @@ -52249,11 +52473,10 @@ self: { ({ mkDerivation, base, ieee754, QuickCheck }: mkDerivation { pname = "geom2d"; - version = "0.1.2.1"; - sha256 = "0235p0gjwsklxynr84ak6zirbxirhwm9f2z7d6b31y5hc9pnrznj"; + version = "0.1.3.1"; + sha256 = "1kz0cdxfc27412vzqv7vcywg9pba177ds6mpwknxlh049vcfrvh5"; buildDepends = [ base ieee754 QuickCheck ]; testDepends = [ base ieee754 QuickCheck ]; - jailbreak = true; description = "package for geometry in euklidean 2d space"; license = stdenv.lib.licenses.gpl3; hydraPlatforms = stdenv.lib.platforms.none; @@ -52298,8 +52521,8 @@ self: { }: mkDerivation { pname = "getopt-generics"; - version = "0.7"; - sha256 = "1r1z13n0s5vxxcxwwfmk8dplah12qdyb0jnjx2hx239hvy2l1bzc"; + version = "0.7.1"; + sha256 = "0jrnasd9lw7ffim0ski5b1mdislvs27n0i37lcbv51rgsl5wm458"; buildDepends = [ base base-compat base-orphans generics-sop tagged ]; @@ -52786,6 +53009,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ghc-simple" = callPackage + ({ mkDerivation, base, ghc, ghc-paths }: + mkDerivation { + pname = "ghc-simple"; + version = "0.1.2.1"; + sha256 = "0hk3sii5d6mjry28gaipl45c6si82rhdsd43cq130fk9m0xzl9hf"; + buildDepends = [ base ghc ghc-paths ]; + homepage = "https://github.com/valderman/ghc-simple"; + description = "Simplified interface to the GHC API"; + license = stdenv.lib.licenses.mit; + }) {}; + "ghc-srcspan-plugin" = callPackage ({ mkDerivation, array, base, containers, ghc, hpc }: mkDerivation { @@ -52974,8 +53209,8 @@ self: { }: mkDerivation { pname = "ghcid"; - version = "0.4"; - sha256 = "0z54444ygxc3irnqjkd9cdzg2b6df9d87lkkazj1cl2qy1x5kbv0"; + version = "0.4.2"; + sha256 = "094ffwwlxg7qgrcgw35rmzincfrwyhxkh6iw9bqdib5l8w9gcr6d"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -53219,23 +53454,23 @@ self: { , clientsession, conduit, conduit-extra, containers, crypto-api , cryptohash, curl, data-default, DAV, dbus, directory, dlist, dns , edit-distance, esqueleto, exceptions, fdo-notify, feed, filepath - , git, gnupg1, gnutls, hamlet, hinotify, hslogger, http-client - , http-conduit, http-types, IfElse, json, lsof, MissingH - , monad-control, monad-logger, mtl, network, network-info - , network-multicast, network-protocol-xmpp, network-uri, openssh - , optparse-applicative, path-pieces, perl, persistent - , persistent-sqlite, persistent-template, process, QuickCheck - , random, regex-tdfa, resourcet, rsync, SafeSemaphore, sandi - , securemem, shakespeare, stm, tasty, tasty-hunit, tasty-quickcheck - , tasty-rerun, template-haskell, text, time, torrent, transformers - , unix, unix-compat, utf8-string, uuid, wai, wai-extra, warp - , warp-tls, wget, which, xml-types, yesod, yesod-core - , yesod-default, yesod-form, yesod-static + , git, gnupg, gnutls, hinotify, hslogger, http-client, http-conduit + , http-types, IfElse, json, lsof, MissingH, monad-control + , monad-logger, mtl, network, network-info, network-multicast + , network-protocol-xmpp, network-uri, openssh, optparse-applicative + , path-pieces, perl, persistent, persistent-sqlite + , persistent-template, process, QuickCheck, random, regex-tdfa + , resourcet, rsync, SafeSemaphore, sandi, securemem, shakespeare + , stm, tasty, tasty-hunit, tasty-quickcheck, tasty-rerun + , template-haskell, text, time, torrent, transformers, unix + , unix-compat, utf8-string, uuid, wai, wai-extra, warp, warp-tls + , wget, which, xml-types, yesod, yesod-core, yesod-default + , yesod-form, yesod-static }: mkDerivation { pname = "git-annex"; - version = "5.20150528"; - sha256 = "1d7760c3wq0zq9q1zs1y9hjlzjjqcdg88wfi0k5hsmwgiysn2pr2"; + version = "5.20150617"; + sha256 = "0m4dbzjmjyjpxbplykil1k64mj2lq5xf2yz7dy406248cscc8drd"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -53243,8 +53478,8 @@ self: { case-insensitive clientsession conduit conduit-extra containers crypto-api cryptohash data-default DAV dbus directory dlist dns edit-distance esqueleto exceptions fdo-notify feed filepath gnutls - hamlet hinotify hslogger http-client http-conduit http-types IfElse - json MissingH monad-control monad-logger mtl network network-info + hinotify hslogger http-client http-conduit http-types IfElse json + MissingH monad-control monad-logger mtl network network-info network-multicast network-protocol-xmpp network-uri optparse-applicative path-pieces persistent persistent-sqlite persistent-template process QuickCheck random regex-tdfa resourcet @@ -53255,7 +53490,7 @@ self: { yesod-static ]; buildTools = [ - bup curl git gnupg1 lsof openssh perl rsync wget which + bup curl git gnupg lsof openssh perl rsync wget which ]; configureFlags = [ "-fassistant" "-fproduction" ]; preConfigure = "export HOME=$TEMPDIR"; @@ -53267,7 +53502,7 @@ self: { description = "manage files with git, without checking their contents into git"; license = stdenv.lib.licenses.gpl3; }) { inherit (pkgs) bup; inherit (pkgs) curl; inherit (pkgs) git; - inherit (pkgs) gnupg1; inherit (pkgs) lsof; + inherit (pkgs) gnupg; inherit (pkgs) lsof; inherit (pkgs) openssh; inherit (pkgs) perl; inherit (pkgs) rsync; inherit (pkgs) wget; inherit (pkgs) which;}; @@ -53560,8 +53795,8 @@ self: { }: mkDerivation { pname = "github-backup"; - version = "1.20150106"; - sha256 = "0y68ml1pp7w6kpfvr0p0sl8q0qmlfyijmw6pd33m301b3ys3p62p"; + version = "1.20150617"; + sha256 = "1qg0mksvbnlfpi9dykg5595d6plgxlcbzrbm4al4cm5m6w0d2a73"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -53573,7 +53808,7 @@ self: { buildTools = [ git ]; homepage = "https://github.com/joeyh/github-backup"; description = "backs up everything github knows about a repository, to the repository"; - license = "GPL"; + license = stdenv.lib.licenses.gpl3; }) { inherit (pkgs) git;}; "github-post-receive" = callPackage @@ -56356,6 +56591,19 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "gyah-bin" = callPackage + ({ mkDerivation, base, extra, GiveYouAHead }: + mkDerivation { + pname = "gyah-bin"; + version = "0.2.2.0"; + sha256 = "16yzkrn5q21nal07jlvzn84maxx94fyrn1lyljd7hazj2lkpcxvw"; + isLibrary = false; + isExecutable = true; + buildDepends = [ base extra GiveYouAHead ]; + description = "A binary version of GiveYouAHead"; + license = stdenv.lib.licenses.mit; + }) {}; + "h-booru" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath , http-conduit, hxt, mtl, stm, template-haskell, transformers @@ -57464,14 +57712,13 @@ self: { }: mkDerivation { pname = "hackernews"; - version = "0.4.0.0"; - sha256 = "1avznjavz5f3rrmcy6xbi3nh2knarrjnxlrh7sk82zv5aashvp2h"; + version = "0.5.0.0"; + sha256 = "1yj8wip52dagmdpziyyjs9hp7k1gdvwl6ynk5hr8c8wxapcj28bs"; buildDepends = [ aeson attoparsec base bytestring either HsOpenSSL http-streams io-streams text time transformers ]; testDepends = [ base hspec transformers ]; - jailbreak = true; description = "API for Hacker News"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -61952,6 +62199,7 @@ self: { base basic-prelude containers errors mtl random-shuffle tasty tasty-hunit tasty-quickcheck text ]; + jailbreak = true; description = "Implementation of the rules of Love Letter"; license = stdenv.lib.licenses.asl20; hydraPlatforms = stdenv.lib.platforms.none; @@ -64529,7 +64777,9 @@ self: { mkDerivation { pname = "highlighting-kate"; version = "0.6"; + revision = "1"; sha256 = "16334fbiyq6017zbgc59qc00h0bk24xh4dcrbqx63dvf72ac37dk"; + editedCabalFile = "7466b389fd27b0520d371b2b225cb6024e9b7dd371cffa78169c219ab449558b"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -64845,19 +65095,21 @@ self: { , either, exceptions, http-client, http-client-tls, http-types, jwt , lens, mtl, network-uri, postgresql-simple, resource-pool, safe , stm, text, time, transformers, unordered-containers, utf8-string - , wai, wai-lens, webcrank-wai, wreq + , wai, wai-lens, webcrank, webcrank-wai, wreq }: mkDerivation { pname = "hipbot"; - version = "0.3.0.2"; - sha256 = "04czq0ix78amd217cf5yj8yvkr4hpsaa38rdmjish40b63crnba3"; + version = "0.5"; + revision = "1"; + sha256 = "0acy9bp2dwszd01l514nx2crdxgb356k18pm9ravddljxr24n1hs"; + editedCabalFile = "6ac1673be45c18dc010eeeef508a021ec9fef4e0a4e05864733f91aec8508ab8"; buildDepends = [ aeson base bifunctors blaze-builder bytestring either exceptions http-client http-client-tls http-types jwt lens mtl network-uri postgresql-simple resource-pool safe stm text time transformers - unordered-containers utf8-string wai wai-lens webcrank-wai wreq + unordered-containers utf8-string wai wai-lens webcrank webcrank-wai + wreq ]; - jailbreak = true; homepage = "https://github.com/purefn/hipbot"; description = "A library for building HipChat Bots"; license = stdenv.lib.licenses.bsd3; @@ -65794,8 +66046,8 @@ self: { ({ mkDerivation, base, binary, gsl, hmatrix, storable-complex }: mkDerivation { pname = "hmatrix-gsl-stats"; - version = "0.3.0.2"; - sha256 = "1n0p7pg9rsdckcysczg7l8rqfm3xw1rc2jzp0khb1i33nhbr7bzn"; + version = "0.4"; + sha256 = "08rrvn833psl0fic1zvhgv2ymgj16cdrfwv003fiapphnqxcpj9a"; buildDepends = [ base binary hmatrix storable-complex ]; pkgconfigDepends = [ gsl ]; homepage = "http://code.haskell.org/hmatrix-gsl-stats"; @@ -67375,8 +67627,8 @@ self: { }: mkDerivation { pname = "hpack"; - version = "0.2.0"; - sha256 = "1a1kjawmf61znikdg9kw34rqhlqhijb00b1dk1w9s8nx52rcrlaa"; + version = "0.3.1"; + sha256 = "178pdk9rhqiyzjpdvkfvjs4gfc27k1limi7qpnpqyxzlcrcsplvb"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -68252,9 +68504,10 @@ self: { mkDerivation { pname = "hs-pkg-config"; version = "0.2.1.0"; + revision = "1"; sha256 = "09v2kp643asl3zpv8rbb8a7zv0h3bn5l4gxz44d71kly9qr3jkhh"; + editedCabalFile = "9337acf593d6f7e1d54f81886cb3736001a127e3b75ba01bd97a99d77565f784"; buildDepends = [ base data-default-class text ]; - jailbreak = true; homepage = "https://github.com/trskop/hs-pkg-config"; description = "Create pkg-config configuration files"; license = stdenv.lib.licenses.bsd3; @@ -69634,9 +69887,9 @@ self: { mkDerivation { pname = "hslua"; version = "0.4.0"; - revision = "1"; + revision = "2"; sha256 = "0l50ppvnavs3lc1vmrpxhlb3ffl772n1hk8mdi9w4ml64ninba3p"; - editedCabalFile = "a2019a0881b90b842dfa9c88e452a45bbadb25d9461d0549ab8fd328a82757ee"; + editedCabalFile = "43f6956aba870857548523718d3d5645e422187964e5158d14a9c17d96671ccb"; buildDepends = [ base bytestring ]; testDepends = [ base bytestring hspec hspec-contrib HUnit text ]; extraLibraries = [ lua ]; @@ -71622,9 +71875,9 @@ self: { mkDerivation { pname = "http-encodings"; version = "0.9.3"; - revision = "1"; + revision = "2"; sha256 = "0b29zqa2ybja73jip83qn1xhiinn1k64b6dmc39ccp48ip1xdnvn"; - editedCabalFile = "b9e6dd65c8dd4119887c084f1bd14570ab0540e723afb845212f041e871210d7"; + editedCabalFile = "0370852e7250c2c2bb1575155286442cbfcdd03a7e494dcaa73305d4e84a6c76"; buildDepends = [ base bytestring HTTP iconv mime mtl parsec text utf8-string zlib ]; @@ -71840,8 +72093,8 @@ self: { }: mkDerivation { pname = "http-streams"; - version = "0.8.3.1"; - sha256 = "13fdwyq50d5gipvdxmi125bn7aqhc3zqbi8jikir3l8bigfby5w0"; + version = "0.8.3.3"; + sha256 = "0cp2jdalg0vzikl6v4yhyflllv7yqskph5gp5ahirawhcj9rfi9z"; buildDepends = [ aeson attoparsec base base64-bytestring blaze-builder bytestring case-insensitive directory HsOpenSSL http-common io-streams mtl @@ -73410,15 +73663,14 @@ self: { }: mkDerivation { pname = "iCalendar"; - version = "0.4.0.2"; - sha256 = "0a6kj6ih8dpzvld7hjvjp6gcf4f2y81x6bx17z6wgzwdj9fv7jry"; + version = "0.4.0.3"; + sha256 = "0dbs9s68fpx67ngjnd1p8c9n421bzn6a034dr6i3bhg2cn0s01mw"; buildDepends = [ base base64-bytestring bytestring case-insensitive containers data-default mime mtl network network-uri old-locale parsec text time ]; - jailbreak = true; - homepage = "http://github.com/tingtun/iCalendar"; + homepage = "http://github.com/chrra/iCalendar"; description = "iCalendar data types, parser, and printer"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -74917,8 +75169,8 @@ self: { }: mkDerivation { pname = "inline-c"; - version = "0.5.3.2"; - sha256 = "0sihzjscdrk02z2d22j0fcqgk05nhpg16zy2cdkxjj4cp09nbaac"; + version = "0.5.3.4"; + sha256 = "1hn1diaxvg0658j9wy9nsa4fhjzjk4g9f161gb26n5cfymsjnnc3"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -74947,6 +75199,20 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "inline-c-win32" = callPackage + ({ mkDerivation, base, containers, inline-c, template-haskell + , Win32 + }: + mkDerivation { + pname = "inline-c-win32"; + version = "0.1"; + sha256 = "14255dn7smmm1rpnjifn7gn2amcncnf3j45ah22bblyb4h27iikm"; + buildDepends = [ base containers inline-c template-haskell Win32 ]; + homepage = "https://github.com/anton-dessiatov/inline-c-win32"; + description = "Win32 API Context for the inline-c library"; + license = stdenv.lib.licenses.mit; + }) {}; + "inquire" = callPackage ({ mkDerivation, aether, base, text }: mkDerivation { @@ -75364,12 +75630,13 @@ self: { }) {}; "invariant" = callPackage - ({ mkDerivation, base, contravariant }: + ({ mkDerivation, base, contravariant, hspec, QuickCheck }: mkDerivation { pname = "invariant"; - version = "0.1.1"; - sha256 = "077jhn2fspnjkr8p3sh6draidqpk6wpism73rz8172acd4jjg4fz"; + version = "0.1.2"; + sha256 = "02p114wnpxbqxik4sz87bd9rcqfs9klgsxi9pc4v1qwyb64mb92b"; buildDepends = [ base contravariant ]; + testDepends = [ base hspec QuickCheck ]; description = "Haskell 98 invariant functors"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -75489,8 +75756,8 @@ self: { }: mkDerivation { pname = "io-streams"; - version = "1.3.0.0"; - sha256 = "029qp0jfap6jczxdi2my1g4vcp8pr4zkxp64xfl7cyiigbapkimw"; + version = "1.3.1.0"; + sha256 = "1fic83lgvyji75gyx8c9ik9lj6jf65wbqmzp30siqmkhdp9y1rxf"; buildDepends = [ attoparsec base bytestring bytestring-builder network primitive process text time transformers vector zlib-bindings @@ -75575,6 +75842,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ip-quoter" = callPackage + ({ mkDerivation, base, network, split, tasty, tasty-hunit + , template-haskell + }: + mkDerivation { + pname = "ip-quoter"; + version = "1.0.0.0"; + revision = "1"; + sha256 = "1idi03f6l9nwnsfp2mvkxz4sgwqlpa8ag3h5drb3i4hwgx0mkhfg"; + editedCabalFile = "5cd6b449c4acd24b27d27a839acdab85f65b5556dd7bc8be115b7e2f6dc5df11"; + buildDepends = [ base network split template-haskell ]; + testDepends = [ base network tasty tasty-hunit ]; + homepage = "https://github.com/shlevy/ip-quoter"; + description = "Quasiquoter for IP addresses"; + license = stdenv.lib.licenses.mit; + }) {}; + "ip6addr" = callPackage ({ mkDerivation, base, cmdargs, IPv6Addr, text }: mkDerivation { @@ -76891,19 +77175,19 @@ self: { ({ mkDerivation, arrows, base, bytestring, cmdargs , data-default-class, data-default-instances-base, Diff, directory , filepath, HTTP, http-encodings, hxt, hxt-tagsoup - , language-ecmascript, network, random, tasty, tasty-golden - , transformers + , language-ecmascript, network, network-uri, random, tasty + , tasty-golden, transformers }: mkDerivation { pname = "jespresso"; - version = "1.0.1"; - sha256 = "0rl4k1vn5q23rjylpyya6dmp6pwdbdvrlxgkczxwy84j9xm665zg"; + version = "1.0.1.1"; + sha256 = "0lxkn0zd4y7b36y42hxpfan5jcy910ksl044yvmrk634p7s3996h"; isLibrary = true; isExecutable = true; buildDepends = [ arrows base bytestring cmdargs data-default-class data-default-instances-base HTTP http-encodings hxt hxt-tagsoup - language-ecmascript network random + language-ecmascript network network-uri random ]; testDepends = [ arrows base Diff directory filepath hxt tasty tasty-golden @@ -77584,6 +77868,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "json-togo" = callPackage + ({ mkDerivation, aeson, attoparsec, attoparsec-trans, base + , bytestring, scientific, text, transformers, unordered-containers + , vector + }: + mkDerivation { + pname = "json-togo"; + version = "0.1.0.3"; + sha256 = "0fl71ij0v4gjjvm5d4624x5fm0si75d9baz07c5ck6da24xgbg0l"; + buildDepends = [ + aeson attoparsec attoparsec-trans base bytestring scientific text + transformers unordered-containers vector + ]; + homepage = "https://github.com/srijs/haskell-json-togo"; + description = "Effectful parsing of JSON documents"; + license = stdenv.lib.licenses.mit; + }) {}; + "json-tools" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, containers , process, tar, text, unordered-containers, vector @@ -78306,8 +78608,8 @@ self: { }: mkDerivation { pname = "keera-hails-reactive-fs"; - version = "0.0.3.3"; - sha256 = "1j8nlzaalmf82jhri8m12hl6vmg6y4amwvb1gv5dld41cz6sdv08"; + version = "0.0.3.4"; + sha256 = "1yinlhp08xxdlbnm90gnwbr1h9sp8r741ihd8kihy1yfqzkp85cy"; buildDepends = [ base directory fsnotify keera-hails-reactivevalues system-filepath ]; @@ -79104,6 +79406,7 @@ self: { homepage = "https://github.com/nikita-volkov/laika"; description = "Minimalistic type-checked compile-time template engine"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "lambda-ast" = callPackage @@ -80352,8 +80655,8 @@ self: { ({ mkDerivation, base, mtl, parsers, text, trifecta }: mkDerivation { pname = "language-thrift"; - version = "0.1.0.1"; - sha256 = "11z8lkny9bhbbgchpy3jz1nn867ygqi4rq5vffxqpbj6qq2a8bxk"; + version = "0.2.0.0"; + sha256 = "01wvpm4aa222ic8z6wg0wdjyfnkd8gh2kqsda7qfckcyxs9679qw"; buildDepends = [ base mtl parsers text trifecta ]; homepage = "https://github.com/abhinav/language-thrift"; description = "Parser for the Thrift IDL format"; @@ -80876,8 +81179,8 @@ self: { }: mkDerivation { pname = "leksah"; - version = "0.15.0.1"; - sha256 = "169vrqdxcx8xkilrw3dh5zmdsb876fny4n0k5gzvi8fian0dl8nh"; + version = "0.15.0.3"; + sha256 = "11b4kp1bbw35gsrdcr5kjyjrfiqrqfy645nbpngjz7rzivjl6n4s"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -80911,8 +81214,8 @@ self: { }: mkDerivation { pname = "leksah-server"; - version = "0.15.0.1"; - sha256 = "04sxfzl8p9fk8qkzmwnm7fkg5sgrzjx0992kivgbrnyx7wh06xsp"; + version = "0.15.0.2"; + sha256 = "090nz2kvsf83jdp2lhng5x87a96xzxknsr4vx2jc2r2vs60841lx"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -81091,16 +81394,33 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "lens-regex" = callPackage + ({ mkDerivation, array, base, directory, doctest, filepath, lens + , regex-base, regex-posix, template-haskell + }: + mkDerivation { + pname = "lens-regex"; + version = "0.1.0"; + sha256 = "0hjizjmvdngxn63gs7x87qidh71aqhvyigrnqlbfjqan76pb6m29"; + isLibrary = true; + isExecutable = true; + buildDepends = [ array base lens regex-base template-haskell ]; + testDepends = [ base directory doctest filepath regex-posix ]; + homepage = "https://github.com/himura/lens-regex"; + description = "Lens powered regular expression"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "lens-simple" = callPackage ({ mkDerivation, base, lens-family, lens-family-core - , lens-family-th + , lens-family-th, mtl, transformers }: mkDerivation { pname = "lens-simple"; - version = "0.1.0.3"; - sha256 = "17s7fjggajlamqi2lc2lrhswykbyba6zv5rf0kr24hn3mv8a6yrk"; + version = "0.1.0.6"; + sha256 = "097zxi3g9ziadiwg4sk96gfjv0jrv4sd3kkpv1hdwjqw1x1dknd3"; buildDepends = [ - base lens-family lens-family-core lens-family-th + base lens-family lens-family-core lens-family-th mtl transformers ]; homepage = "https://github.com/michaelt/lens-simple"; description = "simplified import of elementary lens-family combinators"; @@ -81169,6 +81489,30 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "lentil" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, csv, directory, filemanip + , filepath, hspec, natural-sort, optparse-applicative, parsec + , regex-tdfa + }: + mkDerivation { + pname = "lentil"; + version = "0.1.1.3"; + sha256 = "0m2k3ba4b9dxd5ql8z3m9lmbc9lbxl1d2vi0k0024mjlpp0kdwwm"; + isLibrary = false; + isExecutable = true; + buildDepends = [ + ansi-wl-pprint base csv directory filemanip filepath natural-sort + optparse-applicative parsec regex-tdfa + ]; + testDepends = [ + ansi-wl-pprint base csv directory filemanip filepath hspec + natural-sort optparse-applicative parsec regex-tdfa + ]; + homepage = "http://www.ariis.it/static/articles/lentil/page.html"; + description = "frugal issue tracker"; + license = stdenv.lib.licenses.gpl3; + }) {}; + "level-monad" = callPackage ({ mkDerivation, base, fmlist }: mkDerivation { @@ -82272,7 +82616,9 @@ self: { mkDerivation { pname = "linear"; version = "1.18.1.1"; + revision = "2"; sha256 = "1qgpv6c3q4ljqc3223iyj49piqs9xx58zmnpvg76wkaygsnnzq9p"; + editedCabalFile = "8c57bd840e0c9ab84b032d65a2a48ed6d20da4fb780f0d89d8c53adccc632ba4"; buildDepends = [ adjunctions base binary bytes cereal containers deepseq distributive ghc-prim hashable lens reflection semigroupoids @@ -82321,6 +82667,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "linear-grammar" = callPackage + ({ mkDerivation, base, containers, hspec, QuickCheck }: + mkDerivation { + pname = "linear-grammar"; + version = "0.0.2.1"; + sha256 = "00vfhcqhg6azb1ay12n248l0bjg5g0c5y5ybz5rqf2jdlab7fg97"; + buildDepends = [ base containers QuickCheck ]; + testDepends = [ base containers hspec QuickCheck ]; + description = "A simple grammar for building linear equations and inclusive inequalities"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "linear-maps" = callPackage ({ mkDerivation, base, containers, HUnit }: mkDerivation { @@ -83629,8 +83987,8 @@ self: { }: mkDerivation { pname = "lock-file"; - version = "0.5.0.1"; - sha256 = "0x1pis244pg5k91y3p40m2pc483vx49gcdqa95f7q0gjsnvb9yi9"; + version = "0.5.0.2"; + sha256 = "1l4slkykw59p20kw9iqaa4pjczqx701a9z14nvbzwrmgs2acnki7"; buildDepends = [ base data-default-class directory exceptions tagged-exception-core transformers @@ -83640,7 +83998,6 @@ self: { tagged-exception-core test-framework test-framework-hunit test-framework-quickcheck2 transformers ]; - jailbreak = true; homepage = "https://github.com/trskop/lock-file"; description = "Provide exclusive access to a resource using lock file"; license = stdenv.lib.licenses.bsd3; @@ -83675,8 +84032,8 @@ self: { }: mkDerivation { pname = "log"; - version = "0.2.1"; - sha256 = "0jply63w04pnkfv3s8lpnwvjf43sfhf3mk72p3wva4p28c6mql31"; + version = "0.2.2"; + sha256 = "05izcd3qwwfwj5kl2k2pzjs8fk14hq10qls3a8m057gg4pd6nw1n"; buildDepends = [ aeson aeson-pretty base bytestring deepseq exceptions hpqtypes monad-control monad-time mtl old-locale split stm text time @@ -84707,9 +85064,12 @@ self: { mkDerivation { pname = "machinecell"; version = "1.3.1"; + revision = "1"; sha256 = "1v4rrjszh6sm2x1nwq33f4xwa41bnls0awhy9qfkap62bpad8fxg"; + editedCabalFile = "5a7ee43c327694ac753228da8f16d681a60d23b4926132726e2a093ecacb4725"; buildDepends = [ arrows base free mtl profunctors semigroups ]; testDepends = [ base hspec mtl profunctors QuickCheck ]; + jailbreak = true; homepage = "http://github.com/as-capabl/machinecell"; description = "Arrow based stream transducers"; license = stdenv.lib.licenses.bsd3; @@ -87804,14 +88164,19 @@ self: { }) {}; "mockery" = callPackage - ({ mkDerivation, base, directory, hspec, logging-facade, temporary + ({ mkDerivation, base, bytestring, directory, filepath, hspec + , logging-facade, temporary }: mkDerivation { pname = "mockery"; - version = "0.2.0"; - sha256 = "18a9zz964crhjb1xdzv38pwg458lxajhvjpqd08klb1w7kh57hlj"; - buildDepends = [ base directory logging-facade temporary ]; - testDepends = [ base directory hspec logging-facade temporary ]; + version = "0.3.0"; + sha256 = "1k9ywdamdl1c8nvp4yrjmqpbis1nqj9p9cim5rh72n9w5h3qaa6x"; + buildDepends = [ + base bytestring directory filepath logging-facade temporary + ]; + testDepends = [ + base bytestring directory filepath hspec logging-facade temporary + ]; description = "Support functions for automated testing"; license = stdenv.lib.licenses.mit; }) {}; @@ -88553,8 +88918,8 @@ self: { ({ mkDerivation, base, containers, ghc-prim }: mkDerivation { pname = "monad-skeleton"; - version = "0.1.2"; - sha256 = "13lkbbvajfl4lr6r5plmxvqk6bxn7mp6acsyfxwh2yr6krzdlb82"; + version = "0.1.2.1"; + sha256 = "0sg1yj4cp7ac26ydwhpc05j9bs3scaj25b9sb0xr1gw1qasnyi76"; buildDepends = [ base containers ghc-prim ]; homepage = "https://github.com/fumieval/monad-skeleton"; description = "An undead monad"; @@ -89082,10 +89447,8 @@ self: { }: mkDerivation { pname = "mono-traversable"; - version = "0.9.1"; - revision = "1"; - sha256 = "0hzqlldilkkfmrq3pkymwkzpp9dn40v6fa18kahxlf4qiyih0xzc"; - editedCabalFile = "28392123a8b245f7bc2c13bb63f5c3008118ed38e107cf0534be37461fb64daf"; + version = "0.9.2.1"; + sha256 = "1vs2nl3c0gdhaxxh013ri3l9n13yl9nawiynpsyq6zp495xq5hrl"; buildDepends = [ base bytestring comonad containers dlist dlist-instances hashable semigroupoids semigroups text transformers unordered-containers @@ -89954,13 +90317,16 @@ self: { mkDerivation { pname = "mueval"; version = "0.9.1.1"; + revision = "2"; sha256 = "0p9qf8lb3c1y87qpl9b4n6v6bjrb9fw3yfg4p7niqdz31454d2pz"; + editedCabalFile = "26147e2bbac6b9afea949ab81c6072fc89bbff6b7e6678f3ce57c77d26264832"; isLibrary = true; isExecutable = true; buildDepends = [ base Cabal containers directory extensible-exceptions filepath hint mtl process show simple-reflect unix utf8-string ]; + jailbreak = true; homepage = "https://github.com/gwern/mueval"; description = "Safely evaluate pure Haskell expressions"; license = stdenv.lib.licenses.bsd3; @@ -90193,12 +90559,12 @@ self: { }) {}; "multiset-comb" = callPackage - ({ mkDerivation, base }: + ({ mkDerivation, base, containers, transformers }: mkDerivation { pname = "multiset-comb"; - version = "0.2.3"; - sha256 = "0qkl6csnl1g6wbsyxirdq8hdbbbkp3dfsjix76yx242wdyh1j6pq"; - buildDepends = [ base ]; + version = "0.2.4"; + sha256 = "0j7vxm67aws7dzlmdkvx2aja888jp22qdzz8hgmhvbpcr4p7lz99"; + buildDepends = [ base containers transformers ]; description = "Combinatorial algorithms over multisets"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -90217,16 +90583,17 @@ self: { }) {}; "multistate" = callPackage - ({ mkDerivation, base, mtl, transformers }: + ({ mkDerivation, base, hspec, mtl, tagged, transformers }: mkDerivation { pname = "multistate"; - version = "0.3.0.0"; - sha256 = "1sqaxvvs94max8gw1sz3kkgnp8y9zwrjdclnzv1kkkhciix9a1d1"; + version = "0.6.0.0"; + sha256 = "17b54qy4dgacj0lwy61nf3hbppd950xk9c1yphjn6i6jcr8z66li"; isLibrary = true; isExecutable = true; - buildDepends = [ base mtl transformers ]; + buildDepends = [ base mtl tagged transformers ]; + testDepends = [ base hspec transformers ]; homepage = "https://github.com/lspitzner/multistate"; - description = "like mtl's ReaderT/WriterT/StateT, but more than one contained value/type"; + description = "like mtl's ReaderT / WriterT / StateT, but more than one contained value/type"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -90282,6 +90649,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "murmur3" = callPackage + ({ mkDerivation, base, base16-bytestring, binary, bytestring, HUnit + , QuickCheck, test-framework, test-framework-hunit + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "murmur3"; + version = "1.0.0"; + sha256 = "1rdnfy37dmmrqpapdv9h22ki94mxrz1xdk5ibcj833q35868kjmq"; + buildDepends = [ base binary bytestring ]; + testDepends = [ + base base16-bytestring bytestring HUnit QuickCheck test-framework + test-framework-hunit test-framework-quickcheck2 + ]; + homepage = "http://github.com/plaprade/murmur3"; + description = "Pure Haskell implementation of the MurmurHash3 x86_32 algorithm"; + license = stdenv.lib.licenses.publicDomain; + }) {}; + "murmurhash3" = callPackage ({ mkDerivation, haskell2010 }: mkDerivation { @@ -91025,6 +91411,23 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "namelist" = callPackage + ({ mkDerivation, base, case-insensitive, data-default-class, parsec + , QuickCheck, tasty, tasty-hunit, tasty-quickcheck + }: + mkDerivation { + pname = "namelist"; + version = "0.1.0"; + sha256 = "0sfiqd1dh3frzwnqz4fjh0wg8m55cprqw8ywvcaszrp5gq3mj74s"; + buildDepends = [ base case-insensitive data-default-class parsec ]; + testDepends = [ + base case-insensitive QuickCheck tasty tasty-hunit tasty-quickcheck + ]; + homepage = "https://github.com/philopon/namelist-hs"; + description = "fortran90 namelist parser/pretty printer"; + license = stdenv.lib.licenses.mit; + }) {}; + "names" = callPackage ({ mkDerivation, base, template-haskell }: mkDerivation { @@ -92600,13 +93003,16 @@ self: { }) {}; "network-transport" = callPackage - ({ mkDerivation, base, binary, bytestring, hashable, transformers + ({ mkDerivation, base, binary, bytestring, deepseq, hashable + , transformers }: mkDerivation { pname = "network-transport"; - version = "0.4.1.0"; - sha256 = "0xn879ngrbnm71i1wsbxxiih22sdb6csy6aip6fgqyafqlpc1c93"; - buildDepends = [ base binary bytestring hashable transformers ]; + version = "0.4.2.0"; + sha256 = "0arwy5csrm33217rmnip6b0x61b6am1db6mj5phfysj0pz30viqf"; + buildDepends = [ + base binary bytestring deepseq hashable transformers + ]; homepage = "http://haskell-distributed.github.com"; description = "Network abstraction layer"; license = stdenv.lib.licenses.bsd3; @@ -92642,8 +93048,8 @@ self: { }: mkDerivation { pname = "network-transport-tcp"; - version = "0.4.1"; - sha256 = "11fj0f2yrvdqn3sivfb4p0chs74bx26a0yc49fh160kkcmk42yaf"; + version = "0.4.2"; + sha256 = "0wh3d37cfmqbxa0x9c56miki7m9mpg0xv5rrn8fh562lfvcn89ls"; buildDepends = [ base bytestring containers data-accessor network network-transport ]; @@ -93059,6 +93465,35 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "nixfromnpm" = callPackage + ({ mkDerivation, aeson, base, bytestring, classy-prelude + , data-default, directory, error-list, filepath, github, hspec + , hspec-expectations, http-client-streams, io-streams, MissingH + , mtl, network-uri, parsec, shelly, simple-nix, system-filepath + , text, text-render, unordered-containers + }: + mkDerivation { + pname = "nixfromnpm"; + version = "0.1.0.0"; + sha256 = "16m7rish1n8292virv0dgzvxwjhy73blmdpcfwdkmb2qvkvvv93j"; + isLibrary = false; + isExecutable = true; + buildDepends = [ + aeson base bytestring classy-prelude data-default directory + error-list filepath MissingH mtl network-uri parsec shelly + simple-nix system-filepath text text-render unordered-containers + ]; + testDepends = [ + aeson base bytestring classy-prelude data-default directory + error-list filepath github hspec hspec-expectations + http-client-streams io-streams MissingH mtl network-uri parsec + shelly simple-nix system-filepath text text-render + unordered-containers + ]; + description = "Generate nix expressions from npm packages"; + license = stdenv.lib.licenses.mit; + }) {}; + "nixos-types" = callPackage ({ mkDerivation }: mkDerivation { @@ -93450,6 +93885,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "notzero" = callPackage + ({ mkDerivation, base, bifunctors, directory, doctest, filepath + , lens, mtl, QuickCheck, semigroupoids, semigroups + , template-haskell, transformers + }: + mkDerivation { + pname = "notzero"; + version = "0.0.7"; + sha256 = "1247jhaqlmw720x5j2h6mj677jrg392f4i38zign05ral11xh4xf"; + buildDepends = [ + base bifunctors lens mtl semigroupoids semigroups transformers + ]; + testDepends = [ + base directory doctest filepath QuickCheck template-haskell + ]; + homepage = "https://github.com/NICTA/notzero"; + description = "A data type for representing numeric values, except zero"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "np-extras" = callPackage ({ mkDerivation, base, containers, numeric-prelude, primes }: mkDerivation { @@ -94156,8 +94611,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "old-version"; - version = "1.0.1"; - sha256 = "1h5kln84658036sqap9fxxj464gmw8i6dqiba52577055apl62xv"; + version = "1.1.0"; + sha256 = "1vlh6wz9khcamlb5pv5gy5bss7bws7b92j8kkyqf6cp22x4dxdlc"; buildDepends = [ base ]; jailbreak = true; description = "Basic versioning library"; @@ -95029,6 +95484,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "optional-args" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "optional-args"; + version = "1.0.0"; + sha256 = "0j49cp5y7gp9acvhw315lq92mgr35fwaw90vpxy0n9g541ls350z"; + buildDepends = [ base ]; + description = "Optional function arguments"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "options" = callPackage ({ mkDerivation, base, chell, chell-quickcheck, containers , monads-tf, transformers @@ -95293,8 +95759,8 @@ self: { }: mkDerivation { pname = "orgmode-parse"; - version = "0.1.1.1"; - sha256 = "17slf2i7k8bk1d47l165awn38dlpq2rdw6glzvp8if1dir2l2jl7"; + version = "0.1.1.2"; + sha256 = "1ys9gcydipjxn5ba7ndmz70ri218d6wivxrd7xvcsf4kncfks3xi"; buildDepends = [ aeson attoparsec base bytestring containers free hashable old-locale text thyme unordered-containers @@ -95697,6 +96163,22 @@ self: { license = "unknown"; }) {}; + "pagure-hook-receiver" = callPackage + ({ mkDerivation, base, containers, scotty, shelly, text + , transformers, unix + }: + mkDerivation { + pname = "pagure-hook-receiver"; + version = "0.1.0.0"; + sha256 = "0qnnkxcad4843v6c1fqqkiip6cv82q5fckpn5v40sw2p9xk3lkcl"; + buildDepends = [ + base containers scotty shelly text transformers unix + ]; + homepage = "https://pagure.io/pagure-hook-receiver"; + description = "Receive hooks from pagure and do things with them"; + license = stdenv.lib.licenses.bsd2; + }) {}; + "palette" = callPackage ({ mkDerivation, array, base, colour, containers }: mkDerivation { @@ -95807,8 +96289,8 @@ self: { }: mkDerivation { pname = "pandoc-citeproc"; - version = "0.7.1.1"; - sha256 = "1n96g7l16cn1qcp9xsbdmp844078lpcjsz3lg1x81drnzax9fpa1"; + version = "0.7.2"; + sha256 = "0dpr74alkz9vy5yc09bnqb968hcrqys2xlydjda1g3qsarjg7p9y"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -95821,7 +96303,6 @@ self: { aeson base bytestring directory filepath pandoc pandoc-types process temporary text yaml ]; - jailbreak = true; description = "Supports using pandoc with citeproc"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -95832,8 +96313,8 @@ self: { }: mkDerivation { pname = "pandoc-crossref"; - version = "0.1.2.0"; - sha256 = "0q9ia1nzmzv1q8hplrmxszwk49mlp4v8skbfv4ggsl8s0vxc1c6f"; + version = "0.1.2.1"; + sha256 = "1hr2jfbzanpqbkvsfcbzvlfsnzba11hdrmvc3j63fwqk931qi2jm"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -95853,7 +96334,9 @@ self: { mkDerivation { pname = "pandoc-csv2table"; version = "1.0.1"; + revision = "1"; sha256 = "0b4xszf9bzfhrjgy2cymryab58zhh4jwv9p8g2hiqgrxix8jr1qb"; + editedCabalFile = "0924cc418394f855f93486ee6fb3bae991112c3e63df74f95afa6c2d62b09299"; isLibrary = true; isExecutable = true; buildDepends = [ base csv pandoc pandoc-types text ]; @@ -96674,8 +97157,8 @@ self: { }: mkDerivation { pname = "path"; - version = "0.5.0"; - sha256 = "1fk1fpyrmdxym2qnjmlhkgn2kyn5j728hiqw94i8kg47c1xnihkk"; + version = "0.5.1"; + sha256 = "181dq5r4nslh37yy3hs1k20vd2w9yyp8ccjvxcmq12czfzgzz8bi"; buildDepends = [ base exceptions filepath template-haskell ]; testDepends = [ base hspec HUnit mtl ]; description = "Path"; @@ -96806,8 +97289,8 @@ self: { }: mkDerivation { pname = "paypal-adaptive-hoops"; - version = "0.11.0.1"; - sha256 = "061vzsncyl0is2d3p8sh3a1wb46g2v6vqgdh390b8d41max1wabg"; + version = "0.11.0.2"; + sha256 = "0z71j79wqxnixadpy47n30nrwhqya6qaadlwvrk9q60vrqvd21rm"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -96818,7 +97301,6 @@ self: { aeson base bytestring HUnit test-framework test-framework-hunit text unordered-containers ]; - jailbreak = true; homepage = "https://github.com/fanjam/paypal-adaptive-hoops"; description = "Client for a limited part of PayPal's Adaptive Payments API"; license = stdenv.lib.licenses.mit; @@ -96967,12 +97449,14 @@ self: { }) {}; "pcg-random" = callPackage - ({ mkDerivation, base, doctest, primitive, random, time }: + ({ mkDerivation, base, bytestring, doctest, entropy, primitive + , random, time + }: mkDerivation { pname = "pcg-random"; - version = "0.1.2.0"; - sha256 = "1h2ry2p1nnvh3prrl6xz18p3npccrb0p9qzq41lcn10sizfsgpzx"; - buildDepends = [ base primitive random time ]; + version = "0.1.3.1"; + sha256 = "02sx8l51dks316n0df7h75igynb56ms8gs8siczbl5zrlrgycywi"; + buildDepends = [ base bytestring entropy primitive random time ]; testDepends = [ base doctest ]; homepage = "http://github.com/cchalmers/pcg-random"; description = "Haskell bindings to the PCG random number generator"; @@ -97804,8 +98288,8 @@ self: { }: mkDerivation { pname = "persistent-template"; - version = "2.1.3.3"; - sha256 = "1p9vndchcd06ajqmqmf3pw5ql9r6jqbs9xl5jxv1x0pjvbq6yjy5"; + version = "2.1.3.4"; + sha256 = "0wi1mrcilz66jnlgz16crqlh4bibb03mj460bgg3af4f8zpwja2g"; buildDepends = [ aeson base bytestring containers ghc-prim monad-control monad-logger path-pieces persistent tagged template-haskell text @@ -97814,7 +98298,6 @@ self: { testDepends = [ aeson base bytestring hspec persistent QuickCheck text transformers ]; - jailbreak = true; homepage = "http://www.yesodweb.com/book/persistent"; description = "Type-safe, non-relational, multi-backend persistence"; license = stdenv.lib.licenses.mit; @@ -98778,6 +99261,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pipes-mongodb" = callPackage + ({ mkDerivation, base, monad-control, mongoDB, pipes, text }: + mkDerivation { + pname = "pipes-mongodb"; + version = "0.1.0.0"; + sha256 = "0h4334fajrza7r8jrr78nqhs522kxnbzdj0gnbp7ndvzvx5ij888"; + buildDepends = [ base monad-control mongoDB pipes ]; + testDepends = [ base monad-control mongoDB pipes text ]; + homepage = "http://github.com/jb55/pipes-mongodb"; + description = "Stream results from MongoDB"; + license = stdenv.lib.licenses.mit; + }) {}; + "pipes-network" = callPackage ({ mkDerivation, base, bytestring, network, network-simple, pipes , pipes-safe, transformers @@ -100591,6 +101087,34 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) { inherit (pkgs) adns; inherit (pkgs) openssl;}; + "potrace" = callPackage + ({ mkDerivation, base, bindings-potrace, bytestring, containers + , data-default, JuicyPixels, vector + }: + mkDerivation { + pname = "potrace"; + version = "0.1.0.0"; + sha256 = "1frxf3jzjyyp3bfj6b2mi29fxwcml4bya6sn4c5aizg741dhphng"; + buildDepends = [ + base bindings-potrace bytestring containers data-default + JuicyPixels vector + ]; + description = "Trace bitmap images to paths using potrace"; + license = stdenv.lib.licenses.gpl2; + }) {}; + + "potrace-diagrams" = callPackage + ({ mkDerivation, base, diagrams-lib, JuicyPixels, potrace }: + mkDerivation { + pname = "potrace-diagrams"; + version = "0.1.0.0"; + sha256 = "0ys70a5k384czz0c6bpyy0cqrk35wa1yg6ph19smhm3ag9d8161v"; + buildDepends = [ base diagrams-lib JuicyPixels potrace ]; + homepage = "http://projects.haskell.org/diagrams/"; + description = "Potrace bindings for the diagrams library"; + license = stdenv.lib.licenses.gpl2; + }) {}; + "powermate" = callPackage ({ mkDerivation, base, directory, network, unix }: mkDerivation { @@ -101921,8 +102445,8 @@ self: { }: mkDerivation { pname = "propellor"; - version = "2.4.0"; - sha256 = "1l2zhj12jwsavljx0r6qmz44w7k5bwckwg2wcz38qd6km4wy3ppw"; + version = "2.5.0"; + sha256 = "120pamm3rg2iahbl23y90wbcwdhgjvvsfzlkhi61c97xfybvb08c"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -103108,8 +103632,8 @@ self: { }: mkDerivation { pname = "quantfin"; - version = "0.1.0.2"; - sha256 = "1m6208c8gxbm95a99kk0chh62bk2zb1fmwrdd7fwl7zpwzr8iany"; + version = "0.2.0.0"; + sha256 = "0s9wmkngz31wrllffk3i8y66f60liajwhapih7mnriyfvqqsb6ra"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -103422,6 +103946,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "quickcheck-simple" = callPackage + ({ mkDerivation, base, QuickCheck }: + mkDerivation { + pname = "quickcheck-simple"; + version = "0.1.0.0"; + sha256 = "0vnxyb3qz8i1rpmkga6151cld1jr3kiyv3xrhg814mhf1fmhb8xl"; + buildDepends = [ base QuickCheck ]; + description = "Test properties and default-mains for QuickCheck"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "quickcheck-unicode" = callPackage ({ mkDerivation, base, QuickCheck }: mkDerivation { @@ -104034,14 +104569,14 @@ self: { }: mkDerivation { pname = "range"; - version = "0.1.0.1"; - sha256 = "04nzxjgjnql6bq30pkkmlxcj0cxmw3hlzb6y1fhb052rxmpaq8mk"; + version = "0.1.1.0"; + sha256 = "1cqy6lz7mr0n2zrrn9qxvgp8q7yj0drri1885m1crmvx4xd1dfp2"; buildDepends = [ base parsec ]; testDepends = [ base Cabal QuickCheck random test-framework test-framework-quickcheck2 ]; - jailbreak = true; + homepage = "https://bitbucket.org/robertmassaioli/range"; description = "This has a bunch of code for specifying and managing ranges in your code"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -104108,18 +104643,15 @@ self: { }) {}; "rank1dynamic" = callPackage - ({ mkDerivation, base, binary, constraints, ghc-prim, HUnit - , test-framework, test-framework-hunit + ({ mkDerivation, base, binary, ghc-prim, HUnit, test-framework + , test-framework-hunit }: mkDerivation { pname = "rank1dynamic"; - version = "0.2.0.1"; - sha256 = "1np3ghp7wdn0clsyslk5j6fhs4c5cd6y0xlvdg2jj6ydaglzcchl"; + version = "0.3.1.0"; + sha256 = "0klfwglssp782p1brbfgjm30d2s3lpgd75iv7jq1pih598kkjsd5"; buildDepends = [ base binary ghc-prim ]; - testDepends = [ - base constraints HUnit test-framework test-framework-hunit - ]; - jailbreak = true; + testDepends = [ base HUnit test-framework test-framework-hunit ]; homepage = "http://haskell-distributed.github.com"; description = "Like Data.Dynamic/Data.Typeable but with support for rank-1 polymorphic types"; license = stdenv.lib.licenses.bsd3; @@ -104751,20 +105283,18 @@ self: { }) {}; "record" = callPackage - ({ mkDerivation, attoparsec, base, base-prelude, directory, doctest - , filepath, template-haskell, text, transformers + ({ mkDerivation, base, base-prelude, basic-lens, template-haskell + , transformers }: mkDerivation { pname = "record"; - version = "0.3.1.2"; - sha256 = "02kpi21l2kwysk8qgxgl10ngqnmc0mx50qxf9jq0fmi8rv3fm9xp"; + version = "0.4.0.2"; + sha256 = "18j30j7dppm0lqf9p345bfz65cls15ka6jyflamwgig5h0dzz5mw"; buildDepends = [ - attoparsec base base-prelude template-haskell text transformers + base base-prelude basic-lens template-haskell transformers ]; - testDepends = [ base base-prelude directory doctest filepath ]; - jailbreak = true; homepage = "https://github.com/nikita-volkov/record"; - description = "First class records implemented with quasi-quotation"; + description = "Anonymous records"; license = stdenv.lib.licenses.mit; }) {}; @@ -104782,6 +105312,7 @@ self: { homepage = "https://github.com/nikita-volkov/record-aeson"; description = "Instances of \"aeson\" classes for the \"record\" types"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "record-gl" = callPackage @@ -104805,6 +105336,49 @@ self: { ]; description = "Utilities for working with OpenGL's GLSL shading language and Nikita Volkov's \"Record\"s"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "record-preprocessor" = callPackage + ({ mkDerivation, base, base-prelude, conversion, conversion-text + , record-syntax, text + }: + mkDerivation { + pname = "record-preprocessor"; + version = "0.1.0.0"; + sha256 = "0ign3zvpnz4zrzfqglf34xbcrb21dq8hyzwkzlq9y26r9g3nmbd5"; + isLibrary = false; + isExecutable = true; + buildDepends = [ + base base-prelude conversion conversion-text record-syntax text + ]; + homepage = "https://github.com/nikita-volkov/record-preprocessor"; + description = "Compiler preprocessor introducing a syntactic extension for anonymous records"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "record-syntax" = callPackage + ({ mkDerivation, base, base-prelude, conversion, conversion-text + , directory, doctest, filepath, haskell-src-exts, hspec, parsec + , record, template-haskell, text, transformers + }: + mkDerivation { + pname = "record-syntax"; + version = "0.1.0.0"; + sha256 = "115z96ific9n3612yzkfmj7hxnbjc8xjz5nmfiddklx9zjih7h40"; + buildDepends = [ + base base-prelude conversion conversion-text haskell-src-exts + parsec record template-haskell text transformers + ]; + testDepends = [ + base base-prelude directory doctest filepath hspec record + ]; + jailbreak = true; + homepage = "https://github.com/nikita-volkov/record-syntax"; + description = "A library for parsing and processing the Haskell syntax sprinkled with anonymous records"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "records" = callPackage @@ -105526,7 +106100,9 @@ self: { mkDerivation { pname = "regex-tdfa"; version = "1.2.0"; + revision = "1"; sha256 = "00gl9sx3hzd83lp38jlcj7wvzrda8kww7njwlm1way73m8aar0pw"; + editedCabalFile = "5489b69b9f0e8e181ee5134fd500bb0e2b4f914234c5223c59186035fb50478e"; buildDepends = [ array base bytestring containers ghc-prim mtl parsec regex-base ]; @@ -105969,22 +106545,20 @@ self: { }) {}; "relational-query" = callPackage - ({ mkDerivation, array, base, bytestring, Cabal, cabal-test-compat - , containers, dlist, names-th, persistable-record, sql-words + ({ mkDerivation, array, base, bytestring, containers, dlist + , names-th, persistable-record, quickcheck-simple, sql-words , template-haskell, text, time, time-locale-compat, transformers }: mkDerivation { pname = "relational-query"; - version = "0.5.0.1"; - sha256 = "1yhcdc0m839pdwhb2vv25wz1vbhk5ynfkb9d6xgkjymsjvqlp78n"; + version = "0.5.0.2"; + sha256 = "1n9x0yrfjgyf49b19vjp0n57h88vvj6bzc8nz0c9z0568cdb9fsh"; buildDepends = [ array base bytestring containers dlist names-th persistable-record sql-words template-haskell text time time-locale-compat transformers ]; - testDepends = [ - base Cabal cabal-test-compat containers transformers - ]; + testDepends = [ base containers quickcheck-simple transformers ]; homepage = "http://khibino.github.io/haskell-relational-record/"; description = "Typeful, Modular, Relational, algebraic query engine"; license = stdenv.lib.licenses.bsd3; @@ -106926,8 +107500,8 @@ self: { }: mkDerivation { pname = "rest-gen"; - version = "0.17.0.5"; - sha256 = "1pwn1ws6dcwa00y8dblaj7wnr51mv9hjrc05fiv7mzvl0j0v0iz7"; + version = "0.17.0.6"; + sha256 = "0pkqpycvsdbz2kk6lsq226rkgfrbwh49jky1wcik36yh3s9hfxdq"; buildDepends = [ aeson base blaze-html Cabal code-builder directory fclabels filepath hashable haskell-src-exts HStringTemplate hxt json-schema @@ -107099,8 +107673,8 @@ self: { }: mkDerivation { pname = "rethinkdb"; - version = "1.16.0.0"; - sha256 = "125gg719isf60yv5yj0frkg92bp42cb43d4qzs7jqic1wvhx32yy"; + version = "2.0.0.0"; + sha256 = "09digdn4a9vsmanpj6d2wn6kh59r05cfwjk4xq22iszzjrxami6d"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -107109,9 +107683,8 @@ self: { unordered-containers utf8-string vector ]; testDepends = [ base doctest ]; - jailbreak = true; homepage = "http://github.com/atnnn/haskell-rethinkdb"; - description = "A driver for RethinkDB 1.16"; + description = "A driver for RethinkDB 2.0"; license = stdenv.lib.licenses.asl20; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -107440,6 +108013,30 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "riemann" = callPackage + ({ mkDerivation, base, cereal, containers, data-default, either + , errors, HUnit, lens, network, protobuf, QuickCheck + , test-framework, test-framework-hunit, test-framework-quickcheck2 + , text, time, transformers + }: + mkDerivation { + pname = "riemann"; + version = "0.1.0.1"; + sha256 = "0d36ff839g7y1lm8dg5j5s1vdxr1hqbyjxh7gsfjca00a0cgy5xa"; + buildDepends = [ + base cereal containers data-default either errors lens network + protobuf text time transformers + ]; + testDepends = [ + base either errors HUnit QuickCheck test-framework + test-framework-hunit test-framework-quickcheck2 transformers + ]; + jailbreak = true; + homepage = "https://github.com/telser/riemann-hs"; + description = "A Riemann client for Haskell"; + license = stdenv.lib.licenses.mit; + }) {}; + "riff" = callPackage ({ mkDerivation, base, binary, bytestring, either, filepath , transformers @@ -108555,12 +109152,11 @@ self: { }: mkDerivation { pname = "s3-signer"; - version = "0.2.0.0"; - sha256 = "08n2ip8ba3apgc5x8pq1b0rs9j0ng1d7hkw2jrd307q4q85gngy0"; + version = "0.3.0.0"; + sha256 = "15647fs38blg37s0407ybxlmzwdhmxz3sk914p21g90i2bw5gsc9"; buildDepends = [ base base64-bytestring cryptohash http-types time utf8-string ]; - jailbreak = true; homepage = "https://github.com/dmjio/s3-signer"; description = "Pre-signed Amazon S3 URLs"; license = stdenv.lib.licenses.bsd3; @@ -108669,6 +109265,24 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "safe-printf" = callPackage + ({ mkDerivation, base, doctest, haskell-src-meta, hspec, QuickCheck + , template-haskell, th-lift + }: + mkDerivation { + pname = "safe-printf"; + version = "0.1.0.0"; + sha256 = "19nw306q7xlj6s132qxlfskg67x6rx3zhsk2n6lbz2kryr7v99g6"; + buildDepends = [ base haskell-src-meta template-haskell th-lift ]; + testDepends = [ + base doctest haskell-src-meta hspec QuickCheck template-haskell + th-lift + ]; + homepage = "https://github.com/konn/safe-printf"; + description = "Well-typed, flexible and variadic printf for Haskell"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "safecopy" = callPackage ({ mkDerivation, array, base, bytestring, cereal, containers, lens , lens-action, old-time, quickcheck-instances, tasty @@ -109483,8 +110097,8 @@ self: { }: mkDerivation { pname = "schedule-planner"; - version = "1.0.0.1"; - sha256 = "0p2k67g281f08njhann4yv0vhfbjh4m6rr2x58smxhwqxgpjg399"; + version = "1.0.1.0"; + sha256 = "0vlr4wwazpr7xf5pym2f42gwniy017h02wwymn0zn80wypiv6dz1"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -110354,8 +110968,8 @@ self: { }: mkDerivation { pname = "second-transfer"; - version = "0.5.3.1"; - sha256 = "1ng3a384y3hsm6xgw8mhchkgz8xdgrk35b44lbifdfilcmmq7nrv"; + version = "0.5.3.2"; + sha256 = "0qc6xm7c37n2r9xnqc6njkm2d8lkwmripcr3q1q4m7q97qsvjbdl"; buildDepends = [ attoparsec base base16-bytestring binary bytestring conduit containers exceptions hashable hashtables hslogger http2 lens @@ -111335,6 +111949,158 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "serversession" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , containers, data-default, hashable, hspec, nonce, path-pieces + , QuickCheck, text, time, transformers, unordered-containers + }: + mkDerivation { + pname = "serversession"; + version = "1.0.1"; + sha256 = "08j8v6a2018bmvwsb7crdg0ajak74jggb073pdpx9s0pf3cfzyrz"; + buildDepends = [ + aeson base base64-bytestring bytestring data-default hashable nonce + path-pieces text time transformers unordered-containers + ]; + testDepends = [ + aeson base base64-bytestring bytestring containers data-default + hspec nonce path-pieces QuickCheck text time transformers + unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Secure, modular server-side sessions"; + license = stdenv.lib.licenses.mit; + }) {}; + + "serversession-backend-acid-state" = callPackage + ({ mkDerivation, acid-state, base, containers, hspec, mtl, safecopy + , serversession, unordered-containers + }: + mkDerivation { + pname = "serversession-backend-acid-state"; + version = "1.0.1"; + sha256 = "1hc5vpy82pxd0wlzabw3md4gvhxbnvs8wsa0wammni2a1pf123a7"; + buildDepends = [ + acid-state base containers mtl safecopy serversession + unordered-containers + ]; + testDepends = [ + acid-state base containers hspec mtl safecopy serversession + unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Storage backend for serversession using acid-state"; + license = stdenv.lib.licenses.mit; + }) {}; + + "serversession-backend-persistent" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring, cereal + , hspec, monad-logger, path-pieces, persistent + , persistent-postgresql, persistent-sqlite, persistent-template + , QuickCheck, resource-pool, serversession, tagged, text, time + , transformers, unordered-containers + }: + mkDerivation { + pname = "serversession-backend-persistent"; + version = "1.0"; + sha256 = "1rcfff45qm8akjbby1j64lmc8gff96gzssk2jaw8x5k5nn2pdgq0"; + buildDepends = [ + aeson base base64-bytestring bytestring cereal path-pieces + persistent serversession tagged text time transformers + unordered-containers + ]; + testDepends = [ + aeson base base64-bytestring bytestring cereal hspec monad-logger + path-pieces persistent persistent-postgresql persistent-sqlite + persistent-template QuickCheck resource-pool serversession text + time transformers unordered-containers + ]; + jailbreak = true; + homepage = "https://github.com/yesodweb/serversession"; + description = "Storage backend for serversession using persistent and an RDBMS"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "serversession-backend-redis" = callPackage + ({ mkDerivation, base, bytestring, hedis, hspec, path-pieces + , serversession, tagged, text, time, transformers + , unordered-containers + }: + mkDerivation { + pname = "serversession-backend-redis"; + version = "1.0"; + sha256 = "0r1zr25zw80s4psscdwscf7wlm8qfw4dyk0kkczzvj5434jnxnj2"; + buildDepends = [ + base bytestring hedis path-pieces serversession tagged text time + transformers unordered-containers + ]; + testDepends = [ + base bytestring hedis hspec path-pieces serversession text time + transformers unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Storage backend for serversession using Redis"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "serversession-frontend-snap" = callPackage + ({ mkDerivation, base, bytestring, nonce, path-pieces + , serversession, snap, snap-core, text, time, transformers + , unordered-containers + }: + mkDerivation { + pname = "serversession-frontend-snap"; + version = "1.0"; + sha256 = "1n29c3jfv61fz9kfc4zjwj7df1fll74l2kqccxmg4id8jpsrywci"; + buildDepends = [ + base bytestring nonce path-pieces serversession snap snap-core text + time transformers unordered-containers + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Snap bindings for serversession"; + license = stdenv.lib.licenses.mit; + }) {}; + + "serversession-frontend-wai" = callPackage + ({ mkDerivation, base, bytestring, cookie, data-default + , path-pieces, serversession, text, time, transformers + , unordered-containers, vault, wai, wai-session + }: + mkDerivation { + pname = "serversession-frontend-wai"; + version = "1.0"; + sha256 = "0rxifhjirhmhk1x14m6lvpv6dl32g179i4i3xi3dq59r7l716j0b"; + buildDepends = [ + base bytestring cookie data-default path-pieces serversession text + time transformers unordered-containers vault wai wai-session + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "wai-session bindings for serversession"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "serversession-frontend-yesod" = callPackage + ({ mkDerivation, base, bytestring, containers, cookie, data-default + , path-pieces, serversession, text, time, transformers + , unordered-containers, wai, yesod-core + }: + mkDerivation { + pname = "serversession-frontend-yesod"; + version = "1.0"; + sha256 = "0lv7gkj4inks98g44n5kqvx5s4c66lmxf7gqfdly54znggglcf86"; + buildDepends = [ + base bytestring containers cookie data-default path-pieces + serversession text time transformers unordered-containers wai + yesod-core + ]; + homepage = "https://github.com/yesodweb/serversession"; + description = "Yesod bindings for serversession"; + license = stdenv.lib.licenses.mit; + }) {}; + "servius" = callPackage ({ mkDerivation, base, blaze-builder, blaze-html, bytestring , cmdargs, containers, directory, hamlet, http-types, mime-types @@ -112102,8 +112868,8 @@ self: { ({ mkDerivation, base, containers, text, unix }: mkDerivation { pname = "shell-monad"; - version = "0.6.3"; - sha256 = "0wfn1zwbqzwvbvh1x28rpgsvn8i2ff5r6v4i5kriiw025vdb5r2v"; + version = "0.6.4"; + sha256 = "1wmihv2x4pbz9bkrjyyh4hqwsdmlldmyi5jlgxx6ry6z3jyx9i13"; buildDepends = [ base containers text unix ]; description = "shell monad"; license = stdenv.lib.licenses.bsd3; @@ -112819,6 +113585,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "simple-nix" = callPackage + ({ mkDerivation, base, classy-prelude, error-list, MissingH, mtl + , parsec, system-filepath, text, text-render, unordered-containers + }: + mkDerivation { + pname = "simple-nix"; + version = "0.1.0.0"; + sha256 = "18bvqc3gkbczgvipsv6rn71vmw8ybbgvyxccm6q5fgniv1knzh0i"; + buildDepends = [ + base classy-prelude error-list MissingH mtl parsec system-filepath + text text-render unordered-containers + ]; + homepage = "https://github.com/adnelson/simple-nix"; + description = "Simple parsing/pretty printing for Nix expressions"; + license = stdenv.lib.licenses.mit; + }) {}; + "simple-observer" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -112916,8 +113699,8 @@ self: { }: mkDerivation { pname = "simple-sendfile"; - version = "0.2.20"; - sha256 = "0fzxlj3nmlj9nyzl4ygn6q2rgwvcgjpkypp6cpka64bhqfrgqyb3"; + version = "0.2.21"; + sha256 = "0xzxcz60gl22w3rxjvw0s6js0g5mi6as1n48gl37dv4lbrn9s8v1"; buildDepends = [ base bytestring network unix ]; testDepends = [ base bytestring conduit conduit-extra directory hspec HUnit network @@ -113195,6 +113978,25 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "simplex-basic" = callPackage + ({ mkDerivation, base, bifunctors, containers, hspec + , linear-grammar, mtl, QuickCheck, transformers + }: + mkDerivation { + pname = "simplex-basic"; + version = "0.0.0.1"; + sha256 = "180bnrka1id16scz4zzi60m8692b7pyicfzfbzvi8rz1shl038zq"; + buildDepends = [ + base bifunctors linear-grammar mtl QuickCheck transformers + ]; + testDepends = [ + base bifunctors containers hspec linear-grammar mtl QuickCheck + transformers + ]; + description = "Very basic simplex implementation"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "simseq" = callPackage ({ mkDerivation, base, bio, bytestring, random }: mkDerivation { @@ -113859,8 +114661,8 @@ self: { ({ mkDerivation, base, linear, vector }: mkDerivation { pname = "smoothie"; - version = "0.1.3"; - sha256 = "1326hqinlfipbxcynqfsskh4bq5136b48z3kjic8qnddkgkhgg1s"; + version = "0.2.1"; + sha256 = "07n0qhxhy800nyahfja8qdzk5ygvj4d2l7i2nwh3f3mqy5bp5jyz"; buildDepends = [ base linear vector ]; homepage = "https://github.com/phaazon/smoothie"; description = "Smooth curves via several splines and polynomials"; @@ -114372,8 +115174,8 @@ self: { ({ mkDerivation, acid-state, base, mtl, snap, text, transformers }: mkDerivation { pname = "snaplet-acid-state"; - version = "0.2.6.2"; - sha256 = "0p4cfc5llz2z0jfmkj225nxi8abdncjl53g1rjwc86yfgld0wwm9"; + version = "0.2.7"; + sha256 = "0vjqcmcp0p8vmh7vzwv62bigbx1ck2vnaxlkqmg5wddn0mhfm6gx"; buildDepends = [ acid-state base mtl snap text transformers ]; homepage = "https://github.com/mightybyte/snaplet-acid-state"; description = "acid-state snaplet for Snap Framework"; @@ -114933,8 +115735,8 @@ self: { }: mkDerivation { pname = "snaplet-sass"; - version = "0.1.0.0"; - sha256 = "0wv9a7pa6r7nzgppbywasqy38zk79ann2ivwyyh2b9dny95mx5yd"; + version = "0.1.1.0"; + sha256 = "05vif2rz0dj2b3vm0yh0bwj234xjnjpiaf2fk8vlv00jirgrdr40"; buildDepends = [ base bytestring configurator directory filepath mtl process snap snap-core transformers @@ -114990,10 +115792,10 @@ self: { }: mkDerivation { pname = "snaplet-sqlite-simple"; - version = "0.4.8.2"; - sha256 = "00a92wymniaw0si4xpkx1442prmcjimwrjjqiqnkj6k8bxs7p2jm"; + version = "0.4.8.3"; + sha256 = "0nc0kv9s3c4wc3xb6jggx9v4p141c3af07x8vda18c7qlfif5nx3"; buildDepends = [ - aeson base bytestring clientsession configurator direct-sqlite + aeson base bytestring clientsession configurator direct-sqlite lens MonadCatchIO-transformers mtl snap sqlite-simple text transformers unordered-containers ]; @@ -115003,7 +115805,6 @@ self: { SafeSemaphore snap snap-core sqlite-simple stm test-framework test-framework-hunit text time transformers unordered-containers ]; - jailbreak = true; homepage = "https://github.com/nurpax/snaplet-sqlite-simple"; description = "sqlite-simple snaplet for the Snap Framework"; license = stdenv.lib.licenses.bsd3; @@ -115214,8 +116015,8 @@ self: { }: mkDerivation { pname = "snmp"; - version = "0.1.0.3"; - sha256 = "1zncgn3i6xbvxrwdf6s6vhbmsf6sqncf2rbllx26dz1bmxh4gr33"; + version = "0.2.0.0"; + sha256 = "0vjbpjsa4ivsjzvfc9sr457pms2rw1zpb92d971n0yccl0bxmf67"; buildDepends = [ asn1-encoding asn1-parse asn1-types async base binary bytestring cipher-aes cipher-des containers crypto-cipher-types cryptohash mtl @@ -115383,8 +116184,8 @@ self: { ({ mkDerivation, async, base, bytestring }: mkDerivation { pname = "socket"; - version = "0.3.0.1"; - sha256 = "01fz3lng41i9q4r2wh6nsyx27yc7jbhglzb10lg06d2ll7gxakx0"; + version = "0.4.0.1"; + sha256 = "0xb5mdx8mxyy1h0kccgkj8qc3qkpi1rn1l0z52rid716yw1lia42"; buildDepends = [ base bytestring ]; testDepends = [ async base bytestring ]; homepage = "https://github.com/lpeterse/haskell-socket"; @@ -116026,8 +116827,8 @@ self: { }: mkDerivation { pname = "species"; - version = "0.3.2.4"; - sha256 = "1ka5pd876iddaah9ay2ihcifhfh0f5rd19bn6yh42wlx6mdarfbq"; + version = "0.3.4.1"; + sha256 = "0nn8s43d6r297my3y3m83qv082j2if32c7pyy14c5ll893v16nvw"; buildDepends = [ base containers multiset-comb np-extras numeric-prelude template-haskell @@ -116596,13 +117397,13 @@ self: { }) {}; "sql-words" = callPackage - ({ mkDerivation, base, Cabal, cabal-test-compat, QuickCheck }: + ({ mkDerivation, base, QuickCheck, quickcheck-simple }: mkDerivation { pname = "sql-words"; - version = "0.1.3.0"; - sha256 = "03r6lk4rgk55idxqifazrq673hnkzr089b34qjv1x3yk160xnmz8"; + version = "0.1.3.1"; + sha256 = "17dma51naynrxhvljwp7s3sadnmfqgallxsq7l763z6d0a25zkn9"; buildDepends = [ base ]; - testDepends = [ base Cabal cabal-test-compat QuickCheck ]; + testDepends = [ base QuickCheck quickcheck-simple ]; homepage = "http://khibino.github.io/haskell-relational-record/"; description = "Simple idea SQL keywords data constructor into OverloadedString"; license = stdenv.lib.licenses.bsd3; @@ -116632,8 +117433,8 @@ self: { }: mkDerivation { pname = "sqlite-simple"; - version = "0.4.8.0"; - sha256 = "098d1s80wlvsp307422f79bm3a9knvgw5ni6jap62fl4rpa7fsmz"; + version = "0.4.9.0"; + sha256 = "18v03yqq9jxyvxq93rh20sxak4ffsshhpq9v9lrz1lk9vnhy9pw1"; buildDepends = [ attoparsec base blaze-builder blaze-textual bytestring containers direct-sqlite text time transformers @@ -116969,44 +117770,44 @@ self: { }) {}; "stack" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, base64-bytestring - , bifunctors, binary, bytestring, Cabal, conduit, conduit-extra - , containers, cpphs, cryptohash, cryptohash-conduit, deepseq - , directory, either, enclosed-exceptions, exceptions, fast-logger - , filepath, hashable, hspec, http-client, http-client-tls - , http-conduit, http-types, lifted-base, monad-control - , monad-logger, monad-loops, mtl, old-locale, optparse-applicative - , optparse-simple, path, persistent, persistent-sqlite - , persistent-template, pretty, process, resourcet, safe, split, stm - , streaming-commons, tar, template-haskell, temporary, text, time - , transformers, transformers-base, unix, unordered-containers - , vector, vector-binary-instances, void, yaml, zlib + ({ mkDerivation, aeson, async, attoparsec, base, base16-bytestring + , base64-bytestring, bifunctors, binary, bytestring, Cabal, conduit + , conduit-combinators, conduit-extra, containers, cryptohash + , cryptohash-conduit, deepseq, directory, either + , enclosed-exceptions, exceptions, fast-logger, filepath, hashable + , hspec, http-client, http-client-tls, http-conduit, http-types + , lifted-base, monad-control, monad-logger, monad-loops, mtl + , old-locale, optparse-applicative, optparse-simple, path + , persistent, persistent-sqlite, persistent-template, pretty + , process, resourcet, safe, split, stm, streaming-commons, tar + , template-haskell, temporary, text, time, transformers + , transformers-base, unix, unordered-containers, vector + , vector-binary-instances, void, yaml, zlib }: mkDerivation { pname = "stack"; - version = "0.0.1"; - sha256 = "04bb0wih2nzqrq8si48w1p6zc4b7nzrgrg4cbnly63hgx64vyhq3"; + version = "0.0.2.1"; + sha256 = "1gv2cbjnr93s4cyhybpd8nsqa8gqd9hpm9wyrh19fl82p8db46x6"; isLibrary = true; isExecutable = true; buildDepends = [ - aeson async attoparsec base base64-bytestring bifunctors binary - bytestring Cabal conduit conduit-extra containers cryptohash - cryptohash-conduit deepseq directory either enclosed-exceptions - exceptions fast-logger filepath hashable http-client - http-client-tls http-conduit http-types lifted-base monad-control - monad-logger monad-loops mtl old-locale optparse-applicative - optparse-simple path persistent persistent-sqlite - persistent-template pretty process resourcet safe split stm - streaming-commons tar template-haskell temporary text time - transformers transformers-base unix unordered-containers vector - vector-binary-instances void yaml zlib + aeson async attoparsec base base16-bytestring base64-bytestring + bifunctors binary bytestring Cabal conduit conduit-combinators + conduit-extra containers cryptohash cryptohash-conduit deepseq + directory either enclosed-exceptions exceptions fast-logger + filepath hashable http-client http-client-tls http-conduit + http-types lifted-base monad-control monad-logger monad-loops mtl + old-locale optparse-applicative optparse-simple path persistent + persistent-sqlite persistent-template pretty process resourcet safe + split stm streaming-commons tar template-haskell temporary text + time transformers transformers-base unix unordered-containers + vector vector-binary-instances void yaml zlib ]; testDepends = [ base Cabal conduit conduit-extra containers cryptohash directory exceptions filepath hspec http-conduit monad-logger path resourcet temporary transformers ]; - buildTools = [ cpphs ]; homepage = "https://github.com/commercialhaskell/stack test/package-dump/ghc-7.8.txt test/package-dump/ghc-7.10.txt"; @@ -118844,8 +119645,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "structural-induction"; - version = "0.2"; - sha256 = "1lr91wc1m655pi3ljw3n89svfazrb16785s9mfx361jgn335m8rd"; + version = "0.2.0.1"; + sha256 = "0ac5yhx6cbxzcdqy74lp791xwgammsnd8jazx0xy3ngxn4wwf23r"; buildDepends = [ base containers genifunctors mtl pretty safe ]; testDepends = [ base geniplate language-haskell-extract mtl pretty QuickCheck safe @@ -120619,17 +121420,14 @@ test/package-dump/ghc-7.10.txt"; }) {}; "tagged-exception-core" = callPackage - ({ mkDerivation, base, exceptions, extensible-exceptions, mmorph - , transformers - }: + ({ mkDerivation, base, exceptions, mmorph, mtl, transformers }: mkDerivation { pname = "tagged-exception-core"; - version = "2.0.0.0"; - sha256 = "02ny4yz9afaazw2pxpkpalffx8i5nhi3x9561blrd0pdrqq8qnib"; - buildDepends = [ - base exceptions extensible-exceptions mmorph transformers - ]; - jailbreak = true; + version = "2.1.0.0"; + revision = "1"; + sha256 = "1w4020qb6f5vnym13a4jrha62vj7rqz3nfsrsxa34dl04y63jcax"; + editedCabalFile = "8f3f0eba857169c03927f8605ed326b7a4a5395582aeac4edcee44369b4c9689"; + buildDepends = [ base exceptions mmorph mtl transformers ]; homepage = "https://github.com/trskop/tagged-exception"; description = "Reflect exceptions using phantom types"; license = stdenv.lib.licenses.bsd3; @@ -122706,7 +123504,9 @@ test/package-dump/ghc-7.10.txt"; mkDerivation { pname = "text-position"; version = "0.1.0.0"; + revision = "1"; sha256 = "0cdi5kwpwvzmadhgkgnwax4jhllm6gjrsg1y3f3fp12x28nml1g8"; + editedCabalFile = "45fd633a94e0a13dbaeeb1791725a72d185f54027569e967f8006f07df67d586"; buildDepends = [ base regex-applicative ]; testDepends = [ base QuickCheck regex-applicative ]; jailbreak = true; @@ -122763,6 +123563,18 @@ test/package-dump/ghc-7.10.txt"; hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "text-render" = callPackage + ({ mkDerivation, base, mtl, parsec, text }: + mkDerivation { + pname = "text-render"; + version = "0.1.0.1"; + sha256 = "1viy7amiy6pz2mcay70r952jham9mnkmf70icfzd25cjzqx1h8wn"; + buildDepends = [ base mtl parsec text ]; + homepage = "http://github.com/thinkpad20/text-render"; + description = "A type class for rendering objects as text, pretty-printing, etc"; + license = stdenv.lib.licenses.mit; + }) {}; + "text-show" = callPackage ({ mkDerivation, array, base, base-compat, base-orphans, bytestring , bytestring-builder, ghc-prim, hspec, integer-gmp, nats @@ -123729,8 +124541,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "thumbnail-plus"; - version = "1.0.4"; - sha256 = "110vfk5ri394awzmmq82r87gc9pmvy3500i836602syvd5zfa92x"; + version = "1.0.5"; + sha256 = "0320yfgnsazl7bxm9zf077mi4dgfmlcfnzy1qpdl9w3jl5i7z441"; buildDepends = [ base bytestring conduit conduit-extra data-default directory either gd imagesize-conduit resourcet temporary transformers @@ -124151,13 +124963,14 @@ test/package-dump/ghc-7.10.txt"; mkDerivation { pname = "time-recurrence"; version = "0.9.2"; + revision = "1"; sha256 = "1arqmkagmswimbh78qfz5bcilk9i14w29j4vf4i89d00vac3vrzm"; + editedCabalFile = "7f1fe44ec61160e3fba86a04942d056ac91faa0002817e107e3d8399b71fe427"; buildDepends = [ base data-ordlist mtl time ]; testDepends = [ base data-ordlist HUnit mtl old-locale test-framework test-framework-hunit time ]; - jailbreak = true; homepage = "http://github.com/hellertime/time-recurrence"; description = "Generate recurring dates"; license = stdenv.lib.licenses.gpl3; @@ -124518,6 +125331,46 @@ test/package-dump/ghc-7.10.txt"; license = stdenv.lib.licenses.mit; }) {}; + "tip-haskell-frontend" = callPackage + ({ mkDerivation, base, bytestring, containers, directory, filepath + , geniplate-mirror, ghc, ghc-paths, mtl, pretty, pretty-show + , QuickCheck, split, tip-lib + }: + mkDerivation { + pname = "tip-haskell-frontend"; + version = "0.1.1"; + sha256 = "0za8ls980f98qj3k6pgmzaidmnrlk0nzg1r7skif6jmhh1snqc5h"; + isLibrary = true; + isExecutable = true; + buildDepends = [ + base bytestring containers directory filepath geniplate-mirror ghc + ghc-paths mtl pretty pretty-show QuickCheck split tip-lib + ]; + homepage = "http://tip-org.github.io"; + description = "Convert from Haskell to Tip"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "tip-lib" = callPackage + ({ mkDerivation, alex, array, base, containers, geniplate-mirror + , happy, mtl, optparse-applicative, pretty, pretty-show, split + }: + mkDerivation { + pname = "tip-lib"; + version = "0.1.2"; + sha256 = "01x8hpijgx3fd0svp0di02470xnhq1gaa6k2fxjph9g5rzmx076b"; + isLibrary = true; + isExecutable = true; + buildDepends = [ + array base containers geniplate-mirror mtl optparse-applicative + pretty pretty-show split + ]; + buildTools = [ alex happy ]; + homepage = "http://tip-org.github.io"; + description = "tons of inductive problems - support library and tools"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "titlecase" = callPackage ({ mkDerivation, base, blaze-markup, semigroups, tasty, tasty-hunit , tasty-quickcheck, text @@ -124554,26 +125407,25 @@ test/package-dump/ghc-7.10.txt"; }) {}; "tkyprof" = callPackage - ({ mkDerivation, aeson, attoparsec, attoparsec-conduit, base - , blaze-builder, bytestring, cmdargs, conduit, containers - , data-default, directory, filepath, hamlet, http-types, mtl - , resourcet, rosezipper, shakespeare-css, shakespeare-js, stm - , template-haskell, text, time, transformers, unordered-containers - , vector, wai, wai-extra, warp, web-routes, yesod, yesod-core - , yesod-form, yesod-static + ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring + , cmdargs, conduit, conduit-extra, containers, data-default + , directory, exceptions, filepath, http-types, mtl, resourcet + , rosezipper, shakespeare, stm, template-haskell, text, time + , transformers, unordered-containers, vector, wai, wai-extra, warp + , web-routes, yesod, yesod-core, yesod-form, yesod-static }: mkDerivation { pname = "tkyprof"; - version = "0.2.2"; - sha256 = "0c3sdpjs22fqg5nkwig6smggf6snx1y5dg11y3s5cgm1ihy27h75"; + version = "0.2.2.2"; + sha256 = "1xyy1aagbjyjs9d52jmf7xch0831v7hvsb0mfrxpahvqsdac6h7a"; isLibrary = true; isExecutable = true; buildDepends = [ - aeson attoparsec attoparsec-conduit base blaze-builder bytestring - cmdargs conduit containers data-default directory filepath hamlet - http-types mtl resourcet rosezipper shakespeare-css shakespeare-js - stm template-haskell text time transformers unordered-containers - vector wai wai-extra warp web-routes yesod yesod-core yesod-form + aeson attoparsec base blaze-builder bytestring cmdargs conduit + conduit-extra containers data-default directory exceptions filepath + http-types mtl resourcet rosezipper shakespeare stm + template-haskell text time transformers unordered-containers vector + wai wai-extra warp web-routes yesod yesod-core yesod-form yesod-static ]; jailbreak = true; @@ -125649,6 +126501,27 @@ test/package-dump/ghc-7.10.txt"; license = stdenv.lib.licenses.bsd3; }) {}; + "trurl" = callPackage + ({ mkDerivation, aeson, base, bytestring, directory, filemanip + , hastache, http-conduit, MissingH, safe, scientific, tar, tasty + , tasty-hunit, text, unordered-containers + }: + mkDerivation { + pname = "trurl"; + version = "0.3.0.4"; + sha256 = "1ync81dhac7m62fq15ciipy2lbrqph2riq1af1z70ah30vyzr415"; + isLibrary = true; + isExecutable = true; + buildDepends = [ + aeson base bytestring directory filemanip hastache http-conduit + MissingH safe scientific tar text unordered-containers + ]; + testDepends = [ base hastache tasty tasty-hunit ]; + homepage = "http://github.com/dbushenko/trurl"; + description = "Haskell template code generator"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "tsession" = callPackage ({ mkDerivation, base, containers, mtl, time, transformers }: mkDerivation { @@ -125792,12 +126665,12 @@ test/package-dump/ghc-7.10.txt"; }) {}; "tubes" = callPackage - ({ mkDerivation, base, free, mtl, transformers }: + ({ mkDerivation, base, comonad, free, mtl, transformers }: mkDerivation { pname = "tubes"; - version = "0.1.0.0"; - sha256 = "0xfpvffwp9nqkgc0j6qx6fkliaynhr8zvwzgg02y791hkjbn629k"; - buildDepends = [ base free mtl transformers ]; + version = "0.2.1.0"; + sha256 = "1j1pzsmr4djjvhmix6ffsapm30lv4iim1jvcq454r1kxi0yid76z"; + buildDepends = [ base comonad free mtl transformers ]; homepage = "https://github.com/gatlin/tubes"; description = "Effectful, iteratee-inspired stream processing based on a free monad"; license = stdenv.lib.licenses.gpl3; @@ -127303,7 +128176,9 @@ test/package-dump/ghc-7.10.txt"; mkDerivation { pname = "uhc-light"; version = "1.1.9.0"; + revision = "1"; sha256 = "0dqb0054nbl5qfxrg7g4yvmiawp9ladlws26cdf32jxrm31wgmkj"; + editedCabalFile = "8847b4a41a2f6c9be09cf7b4835f53219522da9ef0ca26b918159fec747bd938"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -127323,8 +128198,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "uhc-util"; - version = "0.1.5.5"; - sha256 = "00b1ycdnm0gm01izs96qwsx3c3p1mrcimzamscaimyr1y14jvfc1"; + version = "0.1.5.6"; + sha256 = "1axg2apkvg3xk1cq78shbnc68i0h6fqcpjg8z3l4nc49kl5dywwz"; buildDepends = [ array base binary bytestring containers directory fclabels fgl hashable ListLike mtl process syb time time-compat uulib @@ -128556,12 +129431,12 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "uri-bytestring"; - version = "0.1.3"; - sha256 = "19zsjvn977rwmlgc062wwzbmdgxxxcf4ad6g64ih4n3q707r6gka"; + version = "0.1.5"; + sha256 = "0pl00n40b1nc3rnvayk8jz9lgv0s1lp33czyg962jdbffwhqgszj"; buildDepends = [ attoparsec base blaze-builder bytestring ]; testDepends = [ - attoparsec base bytestring derive HUnit lens QuickCheck - quickcheck-instances tasty tasty-hunit tasty-quickcheck + attoparsec base blaze-builder bytestring derive HUnit lens + QuickCheck quickcheck-instances tasty tasty-hunit tasty-quickcheck ]; homepage = "https://github.com/Soostone/uri-bytestring"; description = "Haskell URI parsing as ByteStrings"; @@ -128983,16 +129858,19 @@ test/package-dump/ghc-7.10.txt"; "utc" = callPackage ({ mkDerivation, attoparsec, base, bytestring, Cabal, clock - , QuickCheck, test-framework, test-framework-quickcheck2, text + , exceptions, QuickCheck, test-framework + , test-framework-quickcheck2, text }: mkDerivation { pname = "utc"; - version = "0.1.0.1"; - sha256 = "0fqqnb6rcbkdxz7wf1r6475k7lv6c8hkvak8nydcl0d10j0hqkil"; - buildDepends = [ attoparsec base bytestring clock text ]; + version = "0.2.0.1"; + sha256 = "0vnydjjvv0kh1mww9vb9l90crl9ddd5n63dwpjjs8ln56b5yvv5h"; + buildDepends = [ + attoparsec base bytestring clock exceptions text + ]; testDepends = [ - attoparsec base bytestring Cabal clock QuickCheck test-framework - test-framework-quickcheck2 text + attoparsec base bytestring Cabal clock exceptions QuickCheck + test-framework test-framework-quickcheck2 text ]; homepage = "https://github.com/lpeterse/haskell-utc"; description = "A pragmatic time and date library"; @@ -131328,8 +132206,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "wai-middleware-crowd"; - version = "0.1.1.1"; - sha256 = "1lkdjfp7aq61hzh9y13bqk9qgfr6s3m7n13ar73gjv5k2g97fizj"; + version = "0.1.1.2"; + sha256 = "039vqcy16ww7cigzppl0lnmjwbvxdv0z0zq3rnklh334lyh5jfay"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -131437,6 +132315,26 @@ test/package-dump/ghc-7.10.txt"; hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "wai-middleware-metrics" = callPackage + ({ mkDerivation, base, bytestring, ekg-core, http-types, QuickCheck + , scotty, tasty, tasty-hunit, tasty-quickcheck, time, transformers + , wai, wai-extra + }: + mkDerivation { + pname = "wai-middleware-metrics"; + version = "0.2.1"; + sha256 = "0aiig72r72vykd1f1871458d4glnqsrs7rr402jv5ka05d1rg6y0"; + buildDepends = [ base ekg-core http-types time wai ]; + testDepends = [ + base bytestring ekg-core http-types QuickCheck scotty tasty + tasty-hunit tasty-quickcheck time transformers wai wai-extra + ]; + jailbreak = true; + homepage = "https://github.com/Helkafen/wai-middleware-metrics"; + description = "A WAI middleware to collect EKG request metrics"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "wai-middleware-preprocessor" = callPackage ({ mkDerivation, base, Cabal, directory, mtl, split, text, wai , wai-middleware-static, warp @@ -131632,8 +132530,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "wai-routes"; - version = "0.6.2"; - sha256 = "04h0npgg6jfpzgg7g6kwbpkg3k148aq9jb3561r8j7fm6jmmynab"; + version = "0.7.0"; + sha256 = "1adiijvnwgm7j3qdr5ngxcc59amzcphgww3drj308hq278fpac08"; buildDepends = [ aeson base blaze-builder bytestring containers http-types mtl path-pieces random template-haskell text wai @@ -132401,8 +133299,10 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "webcrank"; - version = "0.2.1"; - sha256 = "0px4dy4crivkga0h2ca9j6fxlzwyl8qm8xzd2xyllqm2gzvcc3l7"; + version = "0.2.2"; + revision = "1"; + sha256 = "1rgvpp2526lmly2fli65mygplfc6wzqcw5fkn7gq4fcrmql2cisj"; + editedCabalFile = "487831902c68484790108f97e32098dad9711eb15e0729b9ab1ba009e8fd5747"; buildDepends = [ attoparsec base blaze-builder bytestring case-insensitive either exceptions http-date http-media http-types lens mtl semigroups text @@ -132413,7 +133313,6 @@ test/package-dump/ghc-7.10.txt"; http-media http-types lens mtl tasty tasty-hunit tasty-quickcheck unordered-containers ]; - jailbreak = true; homepage = "https://github.com/webcrank/webcrank.hs"; description = "Webmachine inspired toolkit for building http applications and services"; license = stdenv.lib.licenses.bsd3; @@ -132442,8 +133341,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "webcrank-wai"; - version = "0.2"; - sha256 = "02d6hsgx70mcghz1xrszf1jnl62alki3ch7wacp35s8jz79xrccw"; + version = "0.2.1"; + sha256 = "13db2hpyvzpx9i43d8pryq7f87zlajpfpf0h6biva28l9qamy1yv"; buildDepends = [ base bytestring exceptions lens mtl unix-compat unordered-containers wai wai-lens webcrank webcrank-dispatch @@ -133154,13 +134053,12 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "wl-pprint-extras"; - version = "3.5.0.4"; - sha256 = "0mvg5vff574xvrdbdwnyy71kxv0cp0q5vv8fb12fbgydnvsy3mbl"; + version = "3.5.0.5"; + sha256 = "13wdx7l236yyv9wqsgcjlbrm5gk1bmw1z2lk4b21y699ly2imhm9"; buildDepends = [ base containers nats semigroupoids semigroups text utf8-string ]; testDepends = [ base HUnit test-framework test-framework-hunit ]; - jailbreak = true; homepage = "http://github.com/ekmett/wl-pprint-extras/"; description = "A free monad based on the Wadler/Leijen pretty printer"; license = stdenv.lib.licenses.bsd3; @@ -133194,6 +134092,24 @@ test/package-dump/ghc-7.10.txt"; license = stdenv.lib.licenses.bsd3; }) {}; + "wlc-hs" = callPackage + ({ mkDerivation, base, c2hs, containers, data-default, lens, pretty + , process, transformers, wlc, xkbcommon + }: + mkDerivation { + pname = "wlc-hs"; + version = "0.1.0.0"; + sha256 = "0z553h86dznsf2wagbfhh8p27aa20jm3wmxkklr51al35xralvv9"; + buildDepends = [ + base containers data-default lens pretty process transformers + xkbcommon + ]; + buildTools = [ c2hs ]; + extraLibraries = [ wlc ]; + description = "Haskell bindings for the wlc library"; + license = stdenv.lib.licenses.isc; + }) { wlc = null;}; + "wobsurv" = callPackage ({ mkDerivation, aeson, attoparsec, base-prelude, bytestring , hastache, HTF, http-client, http-types, HUnit, lifted-async @@ -133258,6 +134174,33 @@ test/package-dump/ghc-7.10.txt"; license = stdenv.lib.licenses.bsd3; }) {}; + "wolf" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-s3, amazonka-swf, base + , bytestring, conduit, conduit-extra, cryptohash, exceptions + , fast-logger, http-conduit, lens, monad-control, monad-logger, mtl + , mtl-compat, optparse-applicative, safe, shelly, text + , transformers, transformers-base, unordered-containers, uuid, yaml + }: + mkDerivation { + pname = "wolf"; + version = "0.1.1"; + sha256 = "1g98xjl8qpayj8ynz0391cqhfagaxa03hxqaz2wvyppalqdp44k9"; + isLibrary = true; + isExecutable = true; + buildDepends = [ + aeson amazonka amazonka-s3 amazonka-swf base bytestring conduit + conduit-extra cryptohash exceptions fast-logger http-conduit lens + monad-control monad-logger mtl mtl-compat optparse-applicative safe + shelly text transformers transformers-base unordered-containers + uuid yaml + ]; + jailbreak = true; + homepage = "https://github.com/swift-nav/wolf"; + description = "Amazon Simple Workflow Service Wrapper"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "word-trie" = callPackage ({ mkDerivation, base, binary, containers, hspec, QuickCheck }: mkDerivation { @@ -134351,8 +135294,8 @@ test/package-dump/ghc-7.10.txt"; "xkbcommon" = callPackage ({ mkDerivation, base, bytestring, cpphs, data-flags, filepath - , process, storable-record, template-haskell, text, transformers - , unix, xkbcommon + , libxkbcommon, process, storable-record, template-haskell, text + , transformers, unix }: mkDerivation { pname = "xkbcommon"; @@ -134363,11 +135306,10 @@ test/package-dump/ghc-7.10.txt"; template-haskell text transformers ]; testDepends = [ base unix ]; - extraLibraries = [ xkbcommon ]; + extraLibraries = [ libxkbcommon ]; description = "Haskell bindings for libxkbcommon"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; - }) { xkbcommon = null;}; + }) { inherit (pkgs) libxkbcommon;}; "xkcd" = callPackage ({ mkDerivation, base, bytestring, directory, filepath, HTTP @@ -134539,8 +135481,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "xml-conduit-parse"; - version = "0.2.0.0"; - sha256 = "08dvaqfwi9gaa6xihyh2mksplid3xlfa3qb22glnmrcn37vxpphx"; + version = "0.2.0.1"; + sha256 = "04cs7bfdyia56vp9khdszxap1ri2riymmhsdb8shkcypf4ndhyyw"; buildDepends = [ base conduit conduit-parse containers exceptions parsers text xml-conduit xml-types @@ -135198,6 +136140,23 @@ test/package-dump/ghc-7.10.txt"; license = stdenv.lib.licenses.bsd3; }) {}; + "xmonad-windownames" = callPackage + ({ mkDerivation, base, containers, utf8-string, xmonad + , xmonad-contrib + }: + mkDerivation { + pname = "xmonad-windownames"; + version = "0.1.0.0"; + sha256 = "1w1f0v81dnbxkmavk5d3hbnanx24yzrqacg4m8j4w36k041w7zn9"; + buildDepends = [ + base containers utf8-string xmonad xmonad-contrib + ]; + jailbreak = true; + homepage = "https://github.com/plindbe2/xmonad-windownames"; + description = "A library to automatically put named windows into the DynamicLog"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "xmpipe" = callPackage ({ mkDerivation, base, base64-bytestring, bytestring, handle-like , monads-tf, sasl, simple-pipe, uuid, xml-pipe @@ -136066,8 +137025,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-auth"; - version = "1.4.5"; - sha256 = "0agddsicjqcvraa3lcbxwwnk4mapjjd1y4pdp5kg111kaww6nkdn"; + version = "1.4.5.1"; + sha256 = "161gij0r82raih9lvdws4vsknpm36m00ikd17vhhlzz01q9z7l64"; buildDepends = [ aeson authenticate base base16-bytestring base64-bytestring binary blaze-builder blaze-html blaze-markup byteable bytestring conduit @@ -136077,7 +137036,6 @@ test/package-dump/ghc-7.10.txt"; resourcet safe shakespeare template-haskell text time transformers unordered-containers wai yesod-core yesod-form yesod-persistent ]; - jailbreak = true; homepage = "http://www.yesodweb.com/"; description = "Authentication for Yesod"; license = stdenv.lib.licenses.mit; @@ -136372,8 +137330,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-bin"; - version = "1.4.9.2"; - sha256 = "0bbr9bjgj75jh8q9jzv9h1ivz87svz3j02hwphq32487f3682gd0"; + version = "1.4.10"; + sha256 = "1h55155l7ca664zdwq1x0c6p43gy35p1vvghpgd0ajzip8lsyfq1"; isLibrary = false; isExecutable = true; buildDepends = [ @@ -136496,13 +137454,13 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-crud-persist"; - version = "0.1.0.0"; - sha256 = "0kzigyggzxv4ps8a15bhk8ngxn15inp630x0v3kn0j1xdmj7inpw"; + version = "0.1.1"; + sha256 = "171papb9hns62jswqxkg4q41wb8sb72714i4wghx7g8svh17lv28"; buildDepends = [ base lens persistent text transformers wai yesod-core yesod-form yesod-persistent ]; - homepage = "google.com"; + homepage = "https://github.com/andrewthad/yesod-crud-persist"; description = "Flexible CRUD subsite usable with Yesod and Persistent"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -136769,15 +137727,15 @@ test/package-dump/ghc-7.10.txt"; , containers, country-codes, data-default, directory, fast-logger , hamlet, hjsmin, http-conduit, http-types, lifted-base, mangopay , monad-control, monad-logger, persistent, persistent-postgresql - , persistent-template, resourcet, shakespeare, shakespeare-css - , shakespeare-js, shakespeare-text, template-haskell, text, time - , wai, wai-extra, wai-logger, warp, yaml, yesod, yesod-auth - , yesod-core, yesod-form, yesod-persistent, yesod-static + , persistent-template, resourcet, shakespeare, template-haskell + , text, time, wai, wai-extra, wai-logger, warp, yaml, yesod + , yesod-auth, yesod-core, yesod-form, yesod-persistent + , yesod-static }: mkDerivation { pname = "yesod-mangopay"; - version = "1.11"; - sha256 = "1j6dibg7l0g3hykwvhxm9n898gg06mrgyg89yjbv31pm4mfvycsn"; + version = "1.11.1"; + sha256 = "0haz7zd9s9c12fcz11wkhw50hni08g2an1f65bd6cj871zzz3mnl"; isLibrary = true; isExecutable = true; buildDepends = [ @@ -136785,8 +137743,7 @@ test/package-dump/ghc-7.10.txt"; country-codes data-default directory fast-logger hamlet hjsmin http-conduit http-types lifted-base mangopay monad-control monad-logger persistent persistent-postgresql persistent-template - resourcet shakespeare shakespeare-css shakespeare-js - shakespeare-text template-haskell text time wai wai-extra + resourcet shakespeare template-haskell text time wai wai-extra wai-logger warp yaml yesod yesod-auth yesod-core yesod-form yesod-persistent yesod-static ]; @@ -136891,8 +137848,8 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-persistent"; - version = "1.4.0.2"; - sha256 = "06qzgq0mb7k0h8q6lh47l0mzx91xn4ba07nmn22vsfvjfdji6lib"; + version = "1.4.0.3"; + sha256 = "0prvrz52c2pr4qsanjzndviyq4f6zc49in69xz5153h2vagbfmb4"; buildDepends = [ base blaze-builder conduit persistent persistent-template resource-pool resourcet transformers yesod-core @@ -136901,7 +137858,6 @@ test/package-dump/ghc-7.10.txt"; base blaze-builder conduit hspec persistent persistent-sqlite text wai-extra yesod-core ]; - jailbreak = true; homepage = "http://www.yesodweb.com/"; description = "Some helpers for using Persistent from Yesod"; license = stdenv.lib.licenses.mit; @@ -137261,10 +138217,9 @@ test/package-dump/ghc-7.10.txt"; }: mkDerivation { pname = "yesod-table"; - version = "0.1.1"; - sha256 = "0glbdm19bf0pxp0y2831yi0yxjwc3b9xfhsdimxyc5ppm2dqdxsj"; + version = "0.1.3"; + sha256 = "1phbjcry1drl98ivv7yjqvwcray134zh9xqj37p1p7ki1850id3p"; buildDepends = [ base containers contravariant text yesod-core ]; - jailbreak = true; homepage = "https://github.com/andrewthad/yesod-table"; description = "HTML tables for Yesod"; license = stdenv.lib.licenses.mit; diff --git a/pkgs/development/haskell-modules/hoogle-local-wrapper.sh b/pkgs/development/haskell-modules/hoogle-local-wrapper.sh new file mode 100644 index 000000000000..13ea889119c3 --- /dev/null +++ b/pkgs/development/haskell-modules/hoogle-local-wrapper.sh @@ -0,0 +1,6 @@ +#! @shell@ + +COMMAND=$1 +shift +HOOGLE_DOC_PATH=@out@/share/hoogle/doc exec @hoogle@/bin/hoogle \ + "$COMMAND" -d @out@/share/hoogle "$@" diff --git a/pkgs/development/haskell-modules/hoogle.nix b/pkgs/development/haskell-modules/hoogle.nix new file mode 100644 index 000000000000..822c2bdd82ea --- /dev/null +++ b/pkgs/development/haskell-modules/hoogle.nix @@ -0,0 +1,107 @@ +# Install not only the Hoogle library and executable, but also a local Hoogle +# database which provides "Source" links to all specified 'packages' -- or the +# current Haskell Platform if no custom package set is provided. +# +# It is intended to be used in config.nix similarly to: +# +# { packageOverrides = pkgs: rec { +# +# haskellPackages = +# let callPackage = pkgs.lib.callPackageWith haskellPackages; +# in pkgs.recurseIntoAttrs (pkgs.haskellPackages.override { +# extension = self: super: { +# hoogleLocal = pkgs.haskellPackages.hoogleLocal.override { +# packages = with pkgs.haskellPackages; [ +# mmorph +# monadControl +# ]; +# }; +# }; +# }); +# }} +# +# This will build mmorph and monadControl, and have the hoogle installation +# refer to their documentation via symlink so they are not garbage collected. + +{ stdenv, hoogle, rehoo +, ghc, packages ? [ ghc.ghc ] +}: + +let + inherit (stdenv.lib) optional; + wrapper = ./hoogle-local-wrapper.sh; +in +stdenv.mkDerivation { + name = "hoogle-local-0.1"; + buildInputs = [hoogle rehoo]; + + phases = [ "installPhase" ]; + + docPackages = packages; + installPhase = '' + if [ -z "$docPackages" ]; then + echo "ERROR: The packages attribute has not been set" + exit 1 + fi + + mkdir -p $out/share/hoogle/doc + export HOOGLE_DOC_PATH=$out/share/hoogle/doc + + cd $out/share/hoogle + + function import_dbs() { + find $1 -name '*.txt' | while read f; do + newname=$(basename "$f" | tr '[:upper:]' '[:lower:]') + if [[ -f $f && ! -f ./$newname ]]; then + cp -p $f ./$newname + hoogle convert -d "$(dirname $f)" "./$newname" + fi + done + } + + for i in $docPackages; do + findInputs $i docPackages propagated-native-build-inputs + findInputs $i docPackages propagated-build-inputs + done + + for i in $docPackages; do + if [[ ! $i == $out ]]; then + for docdir in $i/share/doc/*-ghc-*/* $i/share/doc/*; do + if [[ -d $docdir ]]; then + import_dbs $docdir + ln -sf $docdir $out/share/hoogle/doc + fi + done + fi + done + + import_dbs ${ghc}/share/doc/ghc*/html/libraries + ln -sf ${ghc}/share/doc/ghc*/html/libraries/* $out/share/hoogle/doc + + chmod 644 *.hoo *.txt + rehoo -j4 -c64 . + + rm -fr downloads *.dep *.txt + mv default.hoo x || exit 0 + rm -f *.hoo + mv x default.hoo || exit 1 + + if [ ! -f default.hoo ]; then + echo "Unable to build the default Hoogle database" + exit 1 + fi + + mkdir -p $out/bin + substitute ${wrapper} $out/bin/hoogle \ + --subst-var out --subst-var-by shell ${stdenv.shell} \ + --subst-var-by hoogle ${hoogle} + chmod +x $out/bin/hoogle + ''; + + meta = { + description = "A local Hoogle database"; + platforms = ghc.meta.platforms; + hydraPlatforms = with stdenv.lib.platforms; none; + maintainers = with stdenv.lib.maintainers; [ ttuegel ]; + }; +} diff --git a/pkgs/development/haskell-modules/lib.nix b/pkgs/development/haskell-modules/lib.nix index 9b47b047bf66..9ee12cdde371 100644 --- a/pkgs/development/haskell-modules/lib.nix +++ b/pkgs/development/haskell-modules/lib.nix @@ -79,4 +79,10 @@ rec { triggerRebuild = drv: i: overrideCabal drv (drv: { postUnpack = ": trigger rebuild ${toString i}"; }); + withHoogle = haskellEnv: with haskellEnv.haskellPackages; + import ./hoogle.nix { + inherit (pkgs) stdenv; + inherit hoogle rehoo ghc; + packages = haskellEnv.paths; + }; } diff --git a/pkgs/development/haskell-modules/mueval-fix.patch b/pkgs/development/haskell-modules/mueval-fix.patch new file mode 100644 index 000000000000..62a8f8f61e24 --- /dev/null +++ b/pkgs/development/haskell-modules/mueval-fix.patch @@ -0,0 +1,90 @@ +diff --git a/Mueval/ArgsParse.hs b/Mueval/ArgsParse.hs +index 05c8fd9..0c32e27 100644 +--- a/Mueval/ArgsParse.hs ++++ b/Mueval/ArgsParse.hs +@@ -1,10 +1,9 @@ ++{-# LANGUAGE CPP #-} + module Mueval.ArgsParse (Options(..), interpreterOpts, getOptions) where + + import Control.Monad (liftM) + import System.Console.GetOpt + +-import qualified Codec.Binary.UTF8.String as Codec (decodeString) +- + import Mueval.Context (defaultModules, defaultPackages) + + -- | See the results of --help for information on what each option means. +@@ -98,4 +97,11 @@ header = "Usage: mueval [OPTION...] --expression EXPRESSION..." + -- | Just give us the end result options; this parsing for + -- us. Bonus points for handling UTF. + getOptions :: [String] -> Either (Bool, String) Options +-getOptions = interpreterOpts . map Codec.decodeString +\ No newline at end of file ++getOptions = interpreterOpts . map decodeString ++ ++decodeString :: String -> String ++#if __GLASGOW_HASKELL__ >= 702 ++decodeString = id ++#else ++decodeString = Codec.decodeString ++#endif +diff --git a/Mueval/Context.hs b/Mueval/Context.hs +index 78925cf..548514c 100644 +--- a/Mueval/Context.hs ++++ b/Mueval/Context.hs +@@ -1,3 +1,4 @@ ++{-# LANGUAGE CPP #-} + module Mueval.Context ( + cleanModules, + defaultModules, +@@ -32,7 +33,9 @@ defaultModules = ["Prelude", + "Control.Monad.Error", + "Control.Monad.Fix", + "Control.Monad.Identity", ++#if !MIN_VERSION_base(4,7,0) + "Control.Monad.Instances", ++#endif + "Control.Monad.RWS", + "Control.Monad.Reader", + "Control.Monad.State", +diff --git a/Mueval/Interpreter.hs b/Mueval/Interpreter.hs +index 29b771f..6c39482 100644 +--- a/Mueval/Interpreter.hs ++++ b/Mueval/Interpreter.hs +@@ -1,4 +1,5 @@ + {-# LANGUAGE PatternGuards #-} ++{-# LANGUAGE FlexibleContexts #-} + -- TODO: suggest the convenience functions be put into Hint proper? + module Mueval.Interpreter where + +@@ -12,8 +13,6 @@ import System.Exit (exitFailure) + import System.FilePath.Posix (takeFileName) + import qualified Control.Exception.Extensible as E (evaluate,catch,SomeException(..)) + +-import qualified System.IO.UTF8 as UTF (putStrLn) +- + import Language.Haskell.Interpreter (eval, set, reset, setImportsQ, loadModules, liftIO, + installedModulesInScope, languageExtensions, + typeOf, setTopLevelModules, runInterpreter, glasgowExtensions, +@@ -100,7 +99,7 @@ mvload lfl = do canonfile <- makeRelativeToCurrentDirectory lfl + -- flooding. Lambdabot has a similar limit. + sayIO :: String -> IO () + sayIO str = do (out,b) <- render 1024 str +- UTF.putStrLn out ++ putStrLn out + when b exitFailure + + -- | Oh no, something has gone wrong. If it's a compilation error pretty print +diff --git a/mueval.cabal b/mueval.cabal +index 3f9406d..b86d796 100644 +--- a/mueval.cabal ++++ b/mueval.cabal +@@ -32,7 +32,7 @@ library + exposed-modules: Mueval.Parallel, Mueval.Context, Mueval.Interpreter, + Mueval.ArgsParse, Mueval.Resources + build-depends: base>=4 && < 5, containers, directory, mtl>2, filepath, unix, process, +- hint>=0.3.1, show>=0.3, utf8-string, Cabal, extensible-exceptions, simple-reflect ++ hint>=0.3.1, show>=0.3, Cabal, extensible-exceptions, simple-reflect + ghc-options: -Wall -static + + executable mueval-core diff --git a/pkgs/development/haskell-modules/with-packages-wrapper.nix b/pkgs/development/haskell-modules/with-packages-wrapper.nix index 4362bacb9ee7..740047e2c27f 100644 --- a/pkgs/development/haskell-modules/with-packages-wrapper.nix +++ b/pkgs/development/haskell-modules/with-packages-wrapper.nix @@ -1,6 +1,7 @@ { stdenv, lib, ghc, llvmPackages, packages, buildEnv, makeWrapper , ignoreCollisions ? false, withLLVM ? false , postBuild ? "" +, haskellPackages }: # This wrapper works only with GHC 6.12 or later. @@ -94,7 +95,9 @@ buildEnv { ${lib.optionalString hasLibraries "$out/bin/${ghcCommand}-pkg recache"} $out/bin/${ghcCommand}-pkg check '' + postBuild; -} // { - preferLocalBuild = true; - inherit (ghc) version meta; + passthru = { + preferLocalBuild = true; + inherit (ghc) version meta; + inherit haskellPackages; + }; } diff --git a/pkgs/development/interpreters/erlang/R17.nix b/pkgs/development/interpreters/erlang/R17.nix index 6b64fc32e122..3a3d74345155 100644 --- a/pkgs/development/interpreters/erlang/R17.nix +++ b/pkgs/development/interpreters/erlang/R17.nix @@ -1,11 +1,15 @@ { stdenv, fetchurl, perl, gnum4, ncurses, openssl , gnused, gawk, makeWrapper , odbcSupport ? false, unixODBC ? null -, wxSupport ? true, mesa ? null, wxGTK ? null, xlibs ? null +, wxSupport ? true, mesa ? null, wxGTK ? null, xlibs ? null, wxmac ? null , javacSupport ? false, openjdk ? null -, enableHipe ? true}: +, enableHipe ? true +}: + +assert wxSupport -> (if stdenv.isDarwin + then wxmac != null + else mesa != null && wxGTK != null && xlibs != null); -assert wxSupport -> mesa != null && wxGTK != null && xlibs != null; assert odbcSupport -> unixODBC != null; assert javacSupport -> openjdk != null; @@ -23,7 +27,7 @@ stdenv.mkDerivation rec { buildInputs = [ perl gnum4 ncurses openssl makeWrapper - ] ++ optional wxSupport [ mesa wxGTK xlibs.libX11 ] + ] ++ optional wxSupport (if stdenv.isDarwin then [ wxmac ] else [ mesa wxGTK xlibs.libX11 ]) ++ optional odbcSupport [ unixODBC ] ++ optional javacSupport [ openjdk ]; @@ -34,7 +38,13 @@ stdenv.mkDerivation rec { sed -e s@/bin/pwd@pwd@g -i otp_build ''; - configureFlags= "--with-ssl=${openssl} ${optionalString enableHipe "--enable-hipe"} ${optionalString odbcSupport "--with-odbc=${unixODBC}"} ${optionalString stdenv.isDarwin "--enable-darwin-64bit"} ${optionalString javacSupport "--with-javac"}"; + configureFlags= [ + "--with-ssl=${openssl}" + ] ++ optional enableHipe "--enable-hipe" + ++ optional wxSupport "--enable-wx" + ++ optional odbcSupport "--with-odbc=${unixODBC}" + ++ optional javacSupport "--with-javac" + ++ optional stdenv.isDarwin "--enable-darwin-64bit"; postInstall = let manpages = fetchurl { diff --git a/pkgs/development/interpreters/gnu-apl/default.nix b/pkgs/development/interpreters/gnu-apl/default.nix index 687b7319cf48..444621614071 100644 --- a/pkgs/development/interpreters/gnu-apl/default.nix +++ b/pkgs/development/interpreters/gnu-apl/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, liblapack, readline, gettext, ncurses }: +{ stdenv, fetchurl, readline, gettext, ncurses }: stdenv.mkDerivation rec { name = "gnu-apl-${version}"; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "0h4diq3wfbdwxp5nm0z4b0p1zq13lwip0y7v28r9v0mbbk8xsfh1"; }; - buildInputs = [ liblapack readline gettext ncurses ]; + buildInputs = [ readline gettext ncurses ]; postInstall = '' cp -r support-files/ $out/share/doc/ diff --git a/pkgs/development/interpreters/octave/default.nix b/pkgs/development/interpreters/octave/default.nix index 9ad8c2790da6..bdf6f7752777 100644 --- a/pkgs/development/interpreters/octave/default.nix +++ b/pkgs/development/interpreters/octave/default.nix @@ -1,10 +1,22 @@ { stdenv, fetchurl, gfortran, readline, ncurses, perl, flex, texinfo, qhull -, libX11, graphicsmagick, pcre, liblapack, pkgconfig, mesa, fltk -, fftw, fftwSinglePrec, zlib, curl, qrupdate +, libX11, graphicsmagick, pcre, pkgconfig, mesa, fltk +, fftw, fftwSinglePrec, zlib, curl, qrupdate, openblas , qt ? null, qscintilla ? null, ghostscript ? null, llvm ? null, hdf5 ? null,glpk ? null , suitesparse ? null, gnuplot ? null, jdk ? null, python ? null }: +let + suitesparseOrig = suitesparse; + qrupdateOrig = qrupdate; +in +# integer width is determined by openblas, so all dependencies must be built +# with exactly the same openblas +let + suitesparse = + if suitesparseOrig != null then suitesparseOrig.override { inherit openblas; } else null; + qrupdate = if qrupdateOrig != null then qrupdateOrig.override { inherit openblas; } else null; +in + stdenv.mkDerivation rec { version = "4.0.0"; name = "octave-${version}"; @@ -14,7 +26,7 @@ stdenv.mkDerivation rec { }; buildInputs = [ gfortran readline ncurses perl flex texinfo qhull libX11 - graphicsmagick pcre liblapack pkgconfig mesa fltk zlib curl + graphicsmagick pcre pkgconfig mesa fltk zlib curl openblas fftw fftwSinglePrec qrupdate ] ++ (stdenv.lib.optional (qt != null) qt) ++ (stdenv.lib.optional (qscintilla != null) qscintilla) @@ -34,7 +46,13 @@ stdenv.mkDerivation rec { # problems on Hydra enableParallelBuilding = false; - configureFlags = [ "--enable-readline" "--enable-dl" ]; + configureFlags = + [ "--enable-readline" + "--enable-dl" + "--with-blas=openblas" + "--with-lapack=openblas" + ] + ++ stdenv.lib.optional openblas.blas64 "--enable-64"; # Keep a copy of the octave tests detailed results in the output # derivation, because someone may care diff --git a/pkgs/development/interpreters/php/5.4.nix b/pkgs/development/interpreters/php/5.4.nix index c10425631b3c..c1ba35a91343 100644 --- a/pkgs/development/interpreters/php/5.4.nix +++ b/pkgs/development/interpreters/php/5.4.nix @@ -1,6 +1,6 @@ { callPackage, apacheHttpd }: callPackage ./generic.nix { - phpVersion = "5.4.41"; - sha = "0wl27f5z6vymajm2bzfp440zsp1jdxqn71avryiq1zw029db9i2v"; + phpVersion = "5.4.42"; + sha = "1yg03b6a88i7hg593m9zmmcm4kr59wdrhz9xk1frx9ps9gkb51b2"; apacheHttpd = apacheHttpd; } diff --git a/pkgs/development/interpreters/php/5.6.nix b/pkgs/development/interpreters/php/5.6.nix index 425f51ce5c66..e05f1ae10bd8 100644 --- a/pkgs/development/interpreters/php/5.6.nix +++ b/pkgs/development/interpreters/php/5.6.nix @@ -1,6 +1,6 @@ { callPackage, apacheHttpd }: callPackage ./generic.nix { - phpVersion = "5.6.9"; - sha = "1fdwk8g509gxd5ad3y1s3j49hfkjdg8mgmzn9ki3pflbgdxvilqr"; + phpVersion = "5.6.10"; + sha = "0iccgibmbc659z6dh6c58l1b7vnqly7al37fbs0l3si4qy0rqmqa"; apacheHttpd = apacheHttpd; } diff --git a/pkgs/development/interpreters/picolisp/default.nix b/pkgs/development/interpreters/picolisp/default.nix index ddb2a26bab2e..fdeb950bcfd1 100644 --- a/pkgs/development/interpreters/picolisp/default.nix +++ b/pkgs/development/interpreters/picolisp/default.nix @@ -1,66 +1,44 @@ -x@{builderDefsPackage - , jdk /* only used in bootstrap */ - , ...}: -builderDefsPackage -(a : -let - helperArgNames = ["stdenv" "fetchurl" "builderDefsPackage"] ++ - []; - - buildInputs = map (n: builtins.getAttr n x) - (builtins.attrNames (builtins.removeAttrs x helperArgNames)); - sourceInfo = rec { - baseName="picolisp"; - tarballBaseName="picoLisp"; - version="3.1.9"; - name="${baseName}-${version}"; - tarballName="${tarballBaseName}-${version}"; - extension="tgz"; - url="http://www.software-lab.de/${tarballName}.${extension}"; - sha256="1rhfd743ga9qsgn4h2aw1xcgrc7amsllli2zqg8cgm408vxkr6j1"; - }; -in -rec { - src = a.fetchurl { - url = sourceInfo.url; - sha256 = sourceInfo.sha256; +{ stdenv, fetchurl, jdk }: +with stdenv.lib; + +stdenv.mkDerivation rec { + name = "picoLisp-${version}"; + version = "3.1.10"; + src = fetchurl { + url = "http://www.software-lab.de/${name}.tgz"; + sha256 = "1pn5c0d81rz1fazsdijhw4cqybaad2wn6qramdj2qqkzxa3vvll1"; }; - - inherit (sourceInfo) name version; - inherit buildInputs; - - /* doConfigure should be removed if not needed */ - phaseNames = ["doMake" "doDeploy"]; - - goSrcDir = if a.stdenv.system == "x86_64-linux" then - "cd src64" else "cd src"; - makeFlags = [''PREFIX=$out'']; - - doDeploy = a.fullDepEntry ('' + buildInputs = [ jdk ]; + sourceRoot = ''picoLisp/src${optionalString stdenv.is64bit "64"}''; + installPhase = '' cd .. - sed -e "s@/usr/@$out/@g" -i bin/pil - mkdir -p "$out/share/picolisp" "$out/lib" "$out/bin" cp -r . "$out/share/picolisp/build-dir" ln -s "$out/share/picolisp/build-dir" "$out/lib/picolisp" ln -s "$out/lib/picolisp/bin/picolisp" "$out/bin/picolisp" - '') ["minInit" "defEnsureDir" "doMake"]; - + + cat >"$out/bin/pil" <<EOF + #! /bin/sh + $out/bin/picolisp $out/lib/picolisp/lib.l @lib/misc.l @lib/btree.l @lib/db.l @lib/pilog.l + EOF + chmod +x "$out/bin/pil" + + mkdir -p "$out/share/emacs" + ln -s "$out/lib/picolisp/lib/el" "$out/share/emacs/site-lisp" + ''; + meta = { - description = "An interpreter for a small Lisp dialect with builtin DB"; - maintainers = with a.lib.maintainers; - [ - raskin - ]; - platforms = with a.lib.platforms; - linux; - license = a.lib.licenses.mit; + description = "A simple Lisp with an integrated database."; + homepage = http://picolisp.com/; + license = licenses.mit; + platform = platforms.all; + maintainers = with maintainers; [ raskin ]; }; + passthru = { updateInfo = { downloadPage = "http://www.software-lab.de/down.html"; }; }; -}) x - +} diff --git a/pkgs/development/interpreters/pypy/default.nix b/pkgs/development/interpreters/pypy/default.nix index c5abefc6a78a..a453fd3e1a9e 100644 --- a/pkgs/development/interpreters/pypy/default.nix +++ b/pkgs/development/interpreters/pypy/default.nix @@ -6,8 +6,8 @@ assert zlibSupport -> zlib != null; let - majorVersion = "2.5"; - version = "${majorVersion}.1"; + majorVersion = "2.6"; + version = "${majorVersion}.0"; libPrefix = "pypy${majorVersion}"; pypy = stdenv.mkDerivation rec { @@ -18,7 +18,7 @@ let src = fetchurl { url = "https://bitbucket.org/pypy/pypy/get/release-${version}.tar.bz2"; - sha256 = "0gzhgc0rh5ywpkvzishpvkninl41r5k207y8afa8vxwpfx03vcrj"; + sha256 = "0xympj874cnjpxj68xm5gllq2f8bbvz8hr0md8mh1yd6fgzzxibh"; }; buildInputs = [ bzip2 openssl pkgconfig pythonFull libffi ncurses expat sqlite tk tcl x11 libX11 makeWrapper ] diff --git a/pkgs/development/interpreters/python/2.7/default.nix b/pkgs/development/interpreters/python/2.7/default.nix index e67c26829984..4ad4679bd6ea 100644 --- a/pkgs/development/interpreters/python/2.7/default.nix +++ b/pkgs/development/interpreters/python/2.7/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, self, callPackage -, bzip2, openssl +, bzip2, openssl, gettext , includeModules ? false , db, gdbm, ncurses, sqlite, readline -, tcl ? null, tk ? null, x11 ? null, libX11 ? null, x11Support ? true +, tcl ? null, tk ? null, x11 ? null, libX11 ? null, x11Support ? !stdenv.isCygwin , zlib ? null, zlibSupport ? true , expat, libffi }: @@ -224,7 +224,7 @@ let gdbm = buildInternalPythonModule { moduleName = "gdbm"; internalName = "gdbm"; - deps = [ gdbm ]; + deps = [ gdbm ] ++ stdenv.lib.optional stdenv.isCygwin gettext; }; sqlite3 = buildInternalPythonModule { diff --git a/pkgs/development/libraries/apr-util/default.nix b/pkgs/development/libraries/apr-util/default.nix index 0f21af94c64c..bceb10e33555 100644 --- a/pkgs/development/libraries/apr-util/default.nix +++ b/pkgs/development/libraries/apr-util/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, makeWrapper, apr, expat, gnused , sslSupport ? true, openssl , bdbSupport ? false, db -, ldapSupport ? true, openldap +, ldapSupport ? !stdenv.isCygwin, openldap , libiconv }: @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { configureFlags = '' --with-apr=${apr} --with-expat=${expat} - --with-crypto + ${if !stdenv.isCygwin then "--with-crypto" else "--without-pgsql --without-sqlite2 --without-sqlite3 --without-freetds --without-berkeley-db --without-crypto"} ${stdenv.lib.optionalString sslSupport "--with-openssl=${openssl}"} ${stdenv.lib.optionalString bdbSupport "--with-berkeley-db=${db}"} ${stdenv.lib.optionalString ldapSupport "--with-ldap"} diff --git a/pkgs/development/libraries/bobcat/default.nix b/pkgs/development/libraries/bobcat/default.nix index abd8a284e62f..791dab2d17aa 100644 --- a/pkgs/development/libraries/bobcat/default.nix +++ b/pkgs/development/libraries/bobcat/default.nix @@ -19,8 +19,8 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ gcc49 icmake libmilter libX11 openssl readline utillinux - yodl ]; + buildInputs = [ gcc49 libmilter libX11 openssl readline utillinux ]; + nativeBuildInputs = [ icmake yodl ]; postPatch = '' substituteInPlace INSTALL.im --replace /usr $out diff --git a/pkgs/development/libraries/ffmpeg/0.11.nix b/pkgs/development/libraries/ffmpeg/0.11.nix deleted file mode 100644 index abdb26668770..000000000000 --- a/pkgs/development/libraries/ffmpeg/0.11.nix +++ /dev/null @@ -1,7 +0,0 @@ -{ callPackage, ... } @ args: - -callPackage ./generic.nix (args // rec { - version = "${branch}.5"; - branch = "0.11"; - sha256 = "1h5qwn4h7sppqw36hri5p6zlv2387vwaxh2pyj070xfn8hgrk4ll"; -}) diff --git a/pkgs/development/libraries/fmod/4.24.16.nix b/pkgs/development/libraries/fmod/4.24.16.nix new file mode 100644 index 000000000000..d1768d656b4d --- /dev/null +++ b/pkgs/development/libraries/fmod/4.24.16.nix @@ -0,0 +1,50 @@ +{ stdenv, fetchurl }: + +assert (stdenv.system == "x86_64-linux") || (stdenv.system == "i686-linux"); +let + bits = stdenv.lib.optionalString (stdenv.system == "x86_64-linux") "64"; + + libPath = stdenv.lib.makeLibraryPath + [ stdenv.cc.libc stdenv.cc.cc ] + ":${stdenv.cc.cc}/lib64"; + patchLib = x: "patchelf --set-rpath ${libPath} ${x}"; + + src = + (if (bits == "64") then + fetchurl { + url = "http://www.fmod.org/download/fmodex/api/Linux/fmodapi42416linux64.tar.gz"; + sha256 = "0hkwlzchzzgd7fanqznbv5bs53z2qy8iiv9l2y77l4sg1jwmlm6y"; + } + else + fetchurl { + url = "http://www.fmod.org/download/fmodex/api/Linux/fmodapi42416linux.tar.gz"; + sha256 = "13diw3ax2slkr99mwyjyc62b8awc30k0z08cvkpk2p3i1j6f85m5"; + } + ); +in +stdenv.mkDerivation rec { + inherit src; + + name = "fmod-${version}"; + version = "4.24.16"; + + dontStrip = true; + buildPhase = "true"; + installPhase = '' + mkdir -p $out/lib $out/include/fmodex + + cd api/inc && cp * $out/include/fmodex && cd ../lib + cp libfmodex${bits}-${version}.so $out/lib/libfmodex.so + cp libfmodex${bits}L-${version}.so $out/lib/libfmodexL.so + + ${patchLib "$out/lib/libfmodex.so"} + ${patchLib "$out/lib/libfmodexL.so"} + ''; + + meta = { + description = "Programming library and toolkit for the creation and playback of interactive audio"; + homepage = "http://www.fmod.org/"; + license = stdenv.lib.licenses.unfreeRedistributable; + platforms = stdenv.lib.platforms.linux; + maintainers = [ stdenv.lib.maintainers.lassulus ]; + }; +} diff --git a/pkgs/development/libraries/gnutls/3.4.nix b/pkgs/development/libraries/gnutls/3.4.nix index fe44ce3621fc..614834252fa1 100644 --- a/pkgs/development/libraries/gnutls/3.4.nix +++ b/pkgs/development/libraries/gnutls/3.4.nix @@ -1,10 +1,10 @@ { callPackage, fetchurl, ... } @ args: callPackage ./generic.nix (args // rec { - version = "3.4.1"; + version = "3.4.2"; src = fetchurl { url = "ftp://ftp.gnutls.org/gcrypt/gnutls/v3.4/gnutls-${version}.tar.lz"; - sha256 = "06wiwsydfpy5fn86ip4x2s507483l4y847kr1p2chgjw0wqc8vjy"; + sha256 = "1wzasbrs4ncq4yisqyvifl7mzlyyg1pb0idr4fhjmcfpi13sxlaw"; }; }) diff --git a/pkgs/desktops/gnome-3/3.16/misc/goffice/0.8.nix b/pkgs/development/libraries/goffice/0.8.nix index 02520a9f121a..75a7dfb48980 100644 --- a/pkgs/desktops/gnome-3/3.16/misc/goffice/0.8.nix +++ b/pkgs/development/libraries/goffice/0.8.nix @@ -1,6 +1,6 @@ { fetchurl, stdenv, pkgconfig, glib, gtk, libglade, bzip2 , pango, libgsf, libxml2, libart, intltool, gettext -, cairo, gconf, libgnomeui, pcre, gnome3/*just meta*/ }: +, cairo, gconf, libgnomeui, pcre, goffice/*just meta*/ }: stdenv.mkDerivation rec { name = "goffice-0.8.17"; @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { doCheck = true; - meta = gnome3.goffice.meta // { + meta = goffice.meta // { maintainers = [ ]; }; } diff --git a/pkgs/desktops/gnome-3/3.16/misc/goffice/default.nix b/pkgs/development/libraries/goffice/default.nix index 517836f4d633..517836f4d633 100644 --- a/pkgs/desktops/gnome-3/3.16/misc/goffice/default.nix +++ b/pkgs/development/libraries/goffice/default.nix diff --git a/pkgs/desktops/gnome-3/3.16/misc/goffice/pcre_info.patch b/pkgs/development/libraries/goffice/pcre_info.patch index cd4ef3c9fed7..cd4ef3c9fed7 100644 --- a/pkgs/desktops/gnome-3/3.16/misc/goffice/pcre_info.patch +++ b/pkgs/development/libraries/goffice/pcre_info.patch diff --git a/pkgs/development/libraries/kde-frameworks-5.10/default.nix b/pkgs/development/libraries/kde-frameworks-5.10/default.nix index 4423f9c157d6..f4c98c7da33d 100644 --- a/pkgs/development/libraries/kde-frameworks-5.10/default.nix +++ b/pkgs/development/libraries/kde-frameworks-5.10/default.nix @@ -178,7 +178,7 @@ let + " -I${ilmbase}/include/OpenEXR"; }; - kinit = super.kinit // { patches = [ ./kinit/kinit-libpath.patch ]; }; + kinit = super.kinit // { patches = [ ./kinit/0001-kinit-libpath.patch ]; }; kpackage = super.kpackage // { patches = [ ./kpackage/0001-allow-external-paths.patch ]; }; diff --git a/pkgs/development/libraries/kde-frameworks-5.10/kinit/kinit-libpath.patch b/pkgs/development/libraries/kde-frameworks-5.10/kinit/0001-kinit-libpath.patch index a6ccb2085d32..9c76079a382a 100644 --- a/pkgs/development/libraries/kde-frameworks-5.10/kinit/kinit-libpath.patch +++ b/pkgs/development/libraries/kde-frameworks-5.10/kinit/0001-kinit-libpath.patch @@ -1,8 +1,17 @@ +From 723c9b1268a04127647a1c20eebe9804150566dd Mon Sep 17 00:00:00 2001 +From: Thomas Tuegel <ttuegel@gmail.com> +Date: Sat, 13 Jun 2015 08:57:55 -0500 +Subject: [PATCH] kinit libpath + +--- + src/kdeinit/kinit.cpp | 18 ++++++++++-------- + 1 file changed, 10 insertions(+), 8 deletions(-) + diff --git a/src/kdeinit/kinit.cpp b/src/kdeinit/kinit.cpp -index 3c3c913..f510620 100644 +index 9e775b6..0ac5646 100644 --- a/src/kdeinit/kinit.cpp +++ b/src/kdeinit/kinit.cpp -@@ -652,15 +652,17 @@ static pid_t launch(int argc, const char *_name, const char *args, +@@ -660,15 +660,17 @@ static pid_t launch(int argc, const char *_name, const char *args, if (!libpath.isEmpty()) { if (!l.load()) { if (libpath_relative) { @@ -15,10 +24,10 @@ index 3c3c913..f510620 100644 - libpath = install_lib_dir + libpath; - l.setFileName(libpath); + // Use QT_PLUGIN_PATH to find shared library directories -+ // For KF5, the plugin path is /lib/plugins, so the kdeinit5 -+ // shared libraries should be in /lib/plugins/../ ++ // For KF5, the plugin path is /lib/qt5/plugins/, so kdeinit5 ++ // shared libraries should be in /lib/qt5/plugins/../../ + const QRegExp pathSepRegExp(QString::fromLatin1("[:\b]")); -+ const QString up = QString::fromLocal8Bit("/../"); ++ const QString up = QString::fromLocal8Bit("/../../"); + const QStringList paths = QString::fromLocal8Bit(qgetenv("QT_PLUGIN_PATH")).split(pathSepRegExp, QString::KeepEmptyParts); + Q_FOREACH (const QString &path, paths) { + l.setFileName(path + up + libpath); @@ -28,3 +37,6 @@ index 3c3c913..f510620 100644 } } if (!l.isLoaded()) { +-- +2.4.2 + diff --git a/pkgs/development/libraries/libasr/default.nix b/pkgs/development/libraries/libasr/default.nix index b919aef5658c..2f4a122d61e8 100644 --- a/pkgs/development/libraries/libasr/default.nix +++ b/pkgs/development/libraries/libasr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "libasr-${version}"; - version= "1.0.1"; + version= "1.0.2"; src = fetchurl { url = "https://www.opensmtpd.org/archives/${name}.tar.gz"; - sha256 = "10h1c9b58msbggns8k2m0857zmbldb0x8ghk3aay88yn2bip2916"; + sha256 = "0d4blm0kzdhb75fq8sbcpvkc25lv5dbjaxa2ldniaf39633d3xd6"; }; buildInputs = [ libevent openssl ]; diff --git a/pkgs/development/libraries/libebur128/default.nix b/pkgs/development/libraries/libebur128/default.nix new file mode 100644 index 000000000000..db8363d8522d --- /dev/null +++ b/pkgs/development/libraries/libebur128/default.nix @@ -0,0 +1,22 @@ +{ stdenv, fetchFromGitHub, cmake, speexdsp, pkgconfig }: + +stdenv.mkDerivation rec { + version = "1.0.2"; + name = "libebur128-${version}"; + + src = fetchFromGitHub { + owner = "jiixyj"; + repo = "libebur128"; + rev = "v${version}"; + sha256 = "19vy3ldbf931hjvn9jf9dvw1di3yx9ljxyk2yp5cnac1wqiza3jm"; + }; + + buildInputs = [ cmake speexdsp pkgconfig ]; + + meta = with stdenv.lib; { + description = "Implementation of the EBU R128 loudness standard"; + homepage = https://github.com/jiixyj/libebur128; + license = licenses.mit; + maintainers = [ maintainers.andrewrk ]; + }; +} diff --git a/pkgs/development/libraries/libedit/01-cygwin.patch b/pkgs/development/libraries/libedit/01-cygwin.patch new file mode 100644 index 000000000000..33bd39ed61e5 --- /dev/null +++ b/pkgs/development/libraries/libedit/01-cygwin.patch @@ -0,0 +1,25 @@ +--- libedit-20120311-3.0/src/chartype.h 2012-03-11 10:54:58.000000000 +0100 ++++ libedit-20120311-3.0/src/chartype.h 2012-05-03 19:00:20.651847423 +0200 +@@ -56,9 +56,11 @@ + /* Oh for a <uchar.h> with char32_t and __STDC_UTF_32__ in it... + * ref: ISO/IEC DTR 19769 + */ ++#ifndef __CYGWIN__ + #if WCHAR_MAX < INT32_MAX + #warning Build environment does not support non-BMP characters + #endif ++#endif + + #ifndef HAVE_WCSDUP + wchar_t *wcsdup(const wchar_t *s); +--- libedit-20120311-3.0/src/editline/readline.h 2011-02-26 23:42:59.000000000 +0100 ++++ libedit-20120311-3.0/src/editline/readline.h 2012-05-03 19:00:49.211244803 +0200 +@@ -75,7 +75,7 @@ typedef KEYMAP_ENTRY *Keymap; + + #ifndef CTRL + #include <sys/ioctl.h> +-#if !defined(__sun) && !defined(__hpux) && !defined(_AIX) ++#if !defined(__sun) && !defined(__hpux) && !defined(_AIX) && !defined(__CYGWIN__) + #include <sys/ttydefaults.h> + #endif + #ifndef CTRL diff --git a/pkgs/development/libraries/libedit/default.nix b/pkgs/development/libraries/libedit/default.nix index 61bb15dde7da..dc2f5842b285 100644 --- a/pkgs/development/libraries/libedit/default.nix +++ b/pkgs/development/libraries/libedit/default.nix @@ -11,6 +11,10 @@ stdenv.mkDerivation rec { # Have `configure' avoid `/usr/bin/nroff' in non-chroot builds. NROFF = "${groff}/bin/nroff"; + patches = if stdenv.isCygwin then [ + ./01-cygwin.patch + ] else null; + postInstall = '' sed -i ${stdenv.lib.optionalString (stdenv.isDarwin && stdenv.cc.nativeTools) "''"} s/-lncurses/-lncursesw/g $out/lib/pkgconfig/libedit.pc ''; diff --git a/pkgs/development/libraries/libevent/default.nix b/pkgs/development/libraries/libevent/default.nix index 74524164dd09..19878a24e956 100644 --- a/pkgs/development/libraries/libevent/default.nix +++ b/pkgs/development/libraries/libevent/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, python }: +{ stdenv, fetchFromGitHub, autoreconfHook, python, findutils }: let version = "2.0.22"; in stdenv.mkDerivation { @@ -12,7 +12,7 @@ stdenv.mkDerivation { }; nativeBuildInputs = [ autoreconfHook ]; - buildInputs = [ python ]; + buildInputs = [ python ] ++ stdenv.lib.optional stdenv.isCygwin findutils; patchPhase = '' patchShebangs event_rpcgen.py diff --git a/pkgs/development/libraries/libgringotts/default.nix b/pkgs/development/libraries/libgringotts/default.nix new file mode 100644 index 000000000000..93ad88f0021a --- /dev/null +++ b/pkgs/development/libraries/libgringotts/default.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, pkgconfig, zlib, bzip2, libmcrypt, libmhash }: + +stdenv.mkDerivation rec { + name = "libgringotts-${version}"; + version = "1.1.2"; + + src = fetchurl { + url = "http://libgringotts.sourceforge.net/current/${name}.tar.bz2"; + sha256 = "1bzfnpf2gwc2bisbrw06s63g9z9v4mh1n9ksqr6pbgj2prz7bvlk"; + }; + + buildInputs = [ pkgconfig zlib bzip2 libmcrypt libmhash ]; + + meta = with stdenv.lib; { + description = "A small library to encapsulate data in an encrypted structure"; + homepage = http://libgringotts.sourceforge.net/; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ pSub ]; + }; +} diff --git a/pkgs/development/libraries/libgroove/default.nix b/pkgs/development/libraries/libgroove/default.nix new file mode 100644 index 000000000000..ac6c9d297cc3 --- /dev/null +++ b/pkgs/development/libraries/libgroove/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchFromGitHub, cmake, libav, SDL2, chromaprint, libebur128 }: + +stdenv.mkDerivation rec { + version = "4.3.0"; + name = "libgroove-${version}"; + + src = fetchFromGitHub { + owner = "andrewrk"; + repo = "libgroove"; + rev = "${version}"; + sha256 = "1la9d9kig50mc74bxvhx6hzqv0nrci9aqdm4k2j4q0s1nlfgxipd"; + }; + + buildInputs = [ cmake libav SDL2 chromaprint libebur128 ]; + + meta = with stdenv.lib; { + description = "Streaming audio processing library"; + homepage = https://github.com/andrewrk/libgroove; + license = licenses.mit; + platforms = platforms.unix; + maintainers = [ maintainers.andrewrk ]; + }; +} diff --git a/pkgs/development/libraries/libical/respect-env-tzdir.patch b/pkgs/development/libraries/libical/respect-env-tzdir.patch index 980a0d5c71ae..fad78c2fb8a0 100644 --- a/pkgs/development/libraries/libical/respect-env-tzdir.patch +++ b/pkgs/development/libraries/libical/respect-env-tzdir.patch @@ -1,28 +1,25 @@ -diff --git a/src/libical/icaltz-util.c b/src/libical/icaltz-util.c -index fe984c9..22ba0a1 100644 ---- a/src/libical/icaltz-util.c -+++ b/src/libical/icaltz-util.c -@@ -107,7 +107,7 @@ typedef struct +--- a/src/libical/icaltz-util.c 2015-06-11 15:40:58.843138630 +0200 ++++ b/src/libical/icaltz-util.c 2015-06-11 15:43:12.722046252 +0200 +@@ -107,7 +107,7 @@ char charcnt[4]; } tzinfo; -static char *search_paths [] = {"/usr/share/zoneinfo","/usr/lib/zoneinfo","/etc/zoneinfo","/usr/share/lib/zoneinfo"}; -+static char *search_paths [] = {"/etc/zoneinfo"}; ++static char *search_paths [] = {"/etc/zoneinfo","/usr/share/zoneinfo","/usr/lib/zoneinfo","/usr/share/lib/zoneinfo"}; static char *zdir = NULL; #define NUM_SEARCH_PATHS (sizeof (search_paths)/ sizeof (search_paths [0])) -@@ -194,6 +194,16 @@ set_zonedir (void) +@@ -194,6 +194,15 @@ const char *fname = ZONES_TAB_SYSTEM_FILENAME; unsigned int i; -+ const char *env_tzdir = strdup (getenv ("TZDIR")); ++ const char *env_tzdir = getenv ("TZDIR"); + if (env_tzdir) { + sprintf (file_path, "%s/%s", env_tzdir, fname); + if (!access (file_path, F_OK|R_OK)) { + zdir = env_tzdir; + return; + } -+ free (env_tzdir); + } + for (i = 0; i < NUM_SEARCH_PATHS; i++) { diff --git a/pkgs/development/libraries/libinput/default.nix b/pkgs/development/libraries/libinput/default.nix index 87d8154e5aa4..28880a3ac686 100644 --- a/pkgs/development/libraries/libinput/default.nix +++ b/pkgs/development/libraries/libinput/default.nix @@ -15,11 +15,11 @@ in with stdenv.lib; stdenv.mkDerivation rec { - name = "libinput-0.15.0"; + name = "libinput-0.17.0"; src = fetchurl { url = "http://www.freedesktop.org/software/libinput/${name}.tar.xz"; - sha256 = "07gw2bhjikiix6bgln03n0zqnbqw18svlf2dfpsv893xjwcdnmhn"; + sha256 = "1nr8zg99hk6lz2g2kdvlz13i7cwvrsakakrn3c1w2id7wcxj9nxp"; }; configureFlags = [ diff --git a/pkgs/development/libraries/libjpeg-turbo/default.nix b/pkgs/development/libraries/libjpeg-turbo/default.nix index c9de127c9056..158b8825db49 100644 --- a/pkgs/development/libraries/libjpeg-turbo/default.nix +++ b/pkgs/development/libraries/libjpeg-turbo/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, nasm }: stdenv.mkDerivation rec { - name = "libjpeg-turbo-1.4.0"; + name = "libjpeg-turbo-1.4.1"; src = fetchurl { url = "mirror://sourceforge/libjpeg-turbo/${name}.tar.gz"; - sha256 = "1vmv5ciqq98gi2ishqbvlx9hsk7sl06lr6xkcgw480jiddadhfnr"; + sha256 = "027vz97064bjmwj7gdw2p47y1437w08j54frpgzmnql5rvabmxab"; }; buildInputs = [ nasm ]; diff --git a/pkgs/development/libraries/liblaxjson/default.nix b/pkgs/development/libraries/liblaxjson/default.nix new file mode 100644 index 000000000000..cafd6a66aa00 --- /dev/null +++ b/pkgs/development/libraries/liblaxjson/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchFromGitHub, cmake }: + +stdenv.mkDerivation rec { + version = "1.0.5"; + name = "liblaxjson-${version}"; + + src = fetchFromGitHub { + owner = "andrewrk"; + repo = "liblaxjson"; + rev = "${version}"; + sha256 = "01iqbpbhnqfifhv82m6hi8190w5sdim4qyrkss7z1zyv3gpchc5s"; + }; + + buildInputs = [ cmake ]; + + meta = with stdenv.lib; { + description = "Library for parsing JSON config files"; + homepage = https://github.com/andrewrk/liblaxjson; + license = licenses.mit; + platforms = platforms.unix; + maintainers = [ maintainers.andrewrk ]; + }; +} diff --git a/pkgs/development/libraries/libmspack/default.nix b/pkgs/development/libraries/libmspack/default.nix index b78e583fa640..1b981edcdcd1 100644 --- a/pkgs/development/libraries/libmspack/default.nix +++ b/pkgs/development/libraries/libmspack/default.nix @@ -1,13 +1,10 @@ {stdenv, fetchurl}: stdenv.mkDerivation { - name = "libmspack-0.4alpha"; + name = "libmspack-0.5alpha"; src = fetchurl { - # upstream url: "curl: (22) The requested URL returned error: 406 Not Acceptable" - #url = http://www.cabextract.org.uk/libmspack/libmspack-0.4alpha.tar.gz; - url = "http://pkgs.fedoraproject.org/lookaside/pkgs/libmspack/" - + "libmspack-0.4alpha.tar.gz/1ab10b507259993c74b4c41a88103b59/libmspack-0.4alpha.tar.gz"; - sha256 = "0s2w5zxx9cw7445cx9ap59ky5n7r201551zg906w9ghcys1qk5dp"; + url = "http://www.cabextract.org.uk/libmspack/libmspack-0.5alpha.tar.gz"; + sha256 = "04413hynb7zizxnkgy9riik3612dwirkpr6fcjrnfl2za9sz4rw9"; }; meta = { @@ -15,5 +12,4 @@ stdenv.mkDerivation { homepage = http://www.cabextract.org.uk/libmspack; license = stdenv.lib.licenses.lgpl2; }; - } diff --git a/pkgs/development/libraries/libndp/default.nix b/pkgs/development/libraries/libndp/default.nix index ae0db409a1a5..c32e6999ecf9 100644 --- a/pkgs/development/libraries/libndp/default.nix +++ b/pkgs/development/libraries/libndp/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "libndp-1.4"; + name = "libndp-1.5"; src = fetchurl { url = "http://libndp.org/files/${name}.tar.gz"; - sha256 = "0pym5xxq3avg348q61xggwy05i0r2m4sj3mlwlpxfjq2xi3y42rs"; + sha256 = "15f743hjc7yy2sv3hzvfc27s1gny4mh5aww59vn195fff2midwgs"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/libnetfilter_conntrack/default.nix b/pkgs/development/libraries/libnetfilter_conntrack/default.nix index a1a343de0e22..0e10161a75a0 100644 --- a/pkgs/development/libraries/libnetfilter_conntrack/default.nix +++ b/pkgs/development/libraries/libnetfilter_conntrack/default.nix @@ -8,8 +8,9 @@ stdenv.mkDerivation rec { sha256 = "0zcwjav1qgr7ikmvfmy7g3nc7s1kj4j4939d18mpyha9mwy4mv6r"; }; - buildInputs = [ pkgconfig libmnl ]; + buildInputs = [ libmnl ]; propagatedBuildInputs = [ libnfnetlink ]; + nativeBuildInputs = [ pkgconfig ]; meta = with stdenv.lib; { description = "Userspace library providing an API to the in-kernel connection tracking state table"; diff --git a/pkgs/development/libraries/libpsl/default.nix b/pkgs/development/libraries/libpsl/default.nix index 4a2d7be7b8bb..c304b9e6930f 100644 --- a/pkgs/development/libraries/libpsl/default.nix +++ b/pkgs/development/libraries/libpsl/default.nix @@ -27,7 +27,8 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ autoreconfHook icu libxslt pkgconfig ]; + buildInputs = [ icu libxslt ]; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; configureFlags = "--disable-static --enable-man"; diff --git a/pkgs/development/libraries/libraw/default.nix b/pkgs/development/libraries/libraw/default.nix index f0012f552c1d..3e0d2348a50d 100644 --- a/pkgs/development/libraries/libraw/default.nix +++ b/pkgs/development/libraries/libraw/default.nix @@ -1,10 +1,11 @@ { stdenv, fetchurl, lcms2, jasper, pkgconfig }: stdenv.mkDerivation rec { - name = "libraw-0.16.0"; + name = "libraw-${version}"; + version = "0.16.1"; src = fetchurl { - url = http://www.libraw.org/data/LibRaw-0.16.0.tar.gz; + url = "http://www.libraw.org/data/LibRaw-${version}.tar.gz"; sha256 = "15ng4s24grib39r0nlgrf18r2j9yh43qyx4vbif38d95xiqkix3i"; }; diff --git a/pkgs/development/libraries/libssh2/default.nix b/pkgs/development/libraries/libssh2/default.nix index daeb39bc9821..2bd7950751bd 100644 --- a/pkgs/development/libraries/libssh2/default.nix +++ b/pkgs/development/libraries/libssh2/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchurlBoot, openssl, zlib}: stdenv.mkDerivation rec { - name = "libssh2-1.5.0"; + name = "libssh2-1.6.0"; src = fetchurlBoot { url = "${meta.homepage}/download/${name}.tar.gz"; - sha256 = "1z6hfgak00yz0azx6lk6n688mywhdxx03j6sdf95p3w6ssnnn6c3"; + sha256 = "05c2is69c50lyikkh29nk6zhghjk4i7hjx0zqfhq47aald1jj82s"; }; buildInputs = [ openssl zlib ]; diff --git a/pkgs/development/libraries/libtermkey/default.nix b/pkgs/development/libraries/libtermkey/default.nix index e5965a10f67b..c59542fdfed4 100644 --- a/pkgs/development/libraries/libtermkey/default.nix +++ b/pkgs/development/libraries/libtermkey/default.nix @@ -10,7 +10,8 @@ stdenv.mkDerivation rec { sha256 = "085mdshgqsn76gfnnzfns7awv6lals9mgv5a6bybd9f9aj7lvrm5"; }; - makeFlags = [ "PREFIX=$(out)" ]; + makeFlags = [ "PREFIX=$(out)" ] + ++ stdenv.lib.optional stdenv.isDarwin "LIBTOOL=${libtool}/bin/libtool"; buildInputs = [ libtool pkgconfig ncurses ]; diff --git a/pkgs/development/libraries/libuv/default.nix b/pkgs/development/libraries/libuv/default.nix index 37f09d4adf00..08a969033db8 100644 --- a/pkgs/development/libraries/libuv/default.nix +++ b/pkgs/development/libraries/libuv/default.nix @@ -105,5 +105,5 @@ in // mapAttrs (v: h: mkWithAutotools stable (toVersion v) h) { v1_2_0 = "1nbp8qpgw64gl9nrjzxw0ndv1m64cfms0cy5a2883vw6877kizmx"; - v1_5_0 = "1j0871mxw97680ghlqy0dpyfmr26kqa0lk26a2bgcqf4ghqap24x"; + v1_6_1 = "10w9pjbmqcv03v04rnjd8mdh886j7v4y0svdsdklz69zskgdvvqg"; } diff --git a/pkgs/development/libraries/libx86/default.nix b/pkgs/development/libraries/libx86/default.nix index 09cc623cbb19..011e936548a8 100644 --- a/pkgs/development/libraries/libx86/default.nix +++ b/pkgs/development/libraries/libx86/default.nix @@ -12,13 +12,13 @@ rec { inherit buildInputs; phaseNames = ["doPatch" "fixX86Def" "killUsr" "doMakeInstall"]; - patches = [./constants.patch]; + patches = [./constants.patch ./non-x86.patch]; # using BACKEND=x86emu on 64bit systems fixes: # http://www.mail-archive.com/suspend-devel@lists.sourceforge.net/msg02355.html makeFlags = [ "DESTDIR=$out" - ] ++ a.stdenv.lib.optionals ( a.stdenv.system == "x86_64-linux" ) [ "BACKEND=x86emu" ]; + ] ++ a.stdenv.lib.optionals ( a.stdenv.isx86_64 || a.stdenv.isArm ) [ "BACKEND=x86emu" ]; fixX86Def = a.fullDepEntry ('' sed -i lrmi.c -e 's@defined(__i386__)@(defined(__i386__) || defined(__x86_64__))@' diff --git a/pkgs/development/libraries/libx86/non-x86.patch b/pkgs/development/libraries/libx86/non-x86.patch new file mode 100644 index 000000000000..0d41cd737f01 --- /dev/null +++ b/pkgs/development/libraries/libx86/non-x86.patch @@ -0,0 +1,38 @@ +diff -Naur libx86-1.1+ds1.orig/Makefile libx86-1.1+ds1/Makefile +--- libx86-1.1+ds1.orig/Makefile 2008-05-19 12:28:59.000000000 +0300 ++++ libx86-1.1+ds1/Makefile 2012-02-20 01:32:03.750068423 +0200 +@@ -5,6 +5,7 @@ + ifeq ($(BACKEND),x86emu) + OBJECTS += thunk.o x86emu/decode.o x86emu/debug.o x86emu/fpu.o \ + x86emu/ops.o x86emu/ops2.o x86emu/prim_ops.o x86emu/sys.o ++ CFLAGS += -DX86EMU + else + OBJECTS += lrmi.o + endif +diff -Naur libx86-1.1+ds1.orig/thunk.c libx86-1.1+ds1/thunk.c +--- libx86-1.1+ds1.orig/thunk.c 2008-04-03 03:48:00.000000000 +0300 ++++ libx86-1.1+ds1/thunk.c 2012-02-20 01:12:56.468820192 +0200 +@@ -32,6 +32,7 @@ + #define TRUE 1 + #define FALSE 0 + ++#ifndef X86EMU + #define __BUILDIO(bwl,bw,type) \ + static inline void out##bwl##_local(unsigned long port, unsigned type value) { __asm__ __volatile__("out" #bwl " %" #bw "0, %w1" : : "a"(value), "Nd"(port)); \ + }\ +@@ -44,6 +45,15 @@ + __BUILDIO(b,b,char) + __BUILDIO(w,w,short) + __BUILDIO(l,,int) ++#else ++/* use libc functions */ ++#define inb_local inb ++#define inw_local inw ++#define inl_local inl ++#define outb_local outb ++#define outw_local outw ++#define outl_local outl ++#endif /* X86EMU */ + + + char *mmap_addr = SHMERRORPTR; diff --git a/pkgs/development/libraries/libxcomp/default.nix b/pkgs/development/libraries/libxcomp/default.nix index 3a7ca70a85ff..ed9e4b269446 100644 --- a/pkgs/development/libraries/libxcomp/default.nix +++ b/pkgs/development/libraries/libxcomp/default.nix @@ -17,7 +17,8 @@ stdenv.mkDerivation { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ autoreconfHook libjpeg libpng12 libX11 zlib ]; + buildInputs = [ libjpeg libpng12 libX11 zlib ]; + nativeBuildInputs = [ autoreconfHook ]; preAutoreconf = '' cd nxcomp/ diff --git a/pkgs/development/libraries/mbedtls/default.nix b/pkgs/development/libraries/mbedtls/default.nix index 1b0c1186f287..ae8ff907f256 100644 --- a/pkgs/development/libraries/mbedtls/default.nix +++ b/pkgs/development/libraries/mbedtls/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, perl }: stdenv.mkDerivation rec { - name = "mbedtls-1.3.10"; + name = "mbedtls-1.3.11"; src = fetchurl { url = "https://polarssl.org/download/${name}-gpl.tgz"; - sha256 = "0zj0vdmam52hk7c6s3y81bdb4mqawi9fskkcqlgnj8v61j7dhvvl"; + sha256 = "1js1lk6hvw9l3nhjhnhzfazfbnlcmk229hmnlm7jli3agc1979b7"; }; nativeBuildInputs = [ perl ]; diff --git a/pkgs/development/libraries/nlopt/default.nix b/pkgs/development/libraries/nlopt/default.nix index ad1944377271..080f09dfdf45 100644 --- a/pkgs/development/libraries/nlopt/default.nix +++ b/pkgs/development/libraries/nlopt/default.nix @@ -20,9 +20,9 @@ stdenv.mkDerivation rec { homepage = "http://ab-initio.mit.edu/nlopt/"; description = "Free open-source library for nonlinear optimization"; license = stdenv.lib.licenses.lgpl21Plus; - hydraPlatforms = stdenv.lib.platforms.linux; maintainers = [ stdenv.lib.maintainers.simons ]; + broken = true; # cannot cope with Octave 4.x }; } diff --git a/pkgs/development/libraries/openldap/default.nix b/pkgs/development/libraries/openldap/default.nix index 3513d83e8679..97752a268f79 100644 --- a/pkgs/development/libraries/openldap/default.nix +++ b/pkgs/development/libraries/openldap/default.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl, openssl, cyrus_sasl, db, groff}: +{ stdenv, fetchurl, autoconf, openssl, cyrus_sasl, db, groff }: stdenv.mkDerivation rec { name = "openldap-2.4.40"; @@ -8,8 +8,17 @@ stdenv.mkDerivation rec { sha256 = "1nyslrgwxwilgv5sixc37svls5rbvhsv9drb7hlrjr2vqaji29ni"; }; + # Last tested for openldap 2.4.40 + patches = [ ./fix-libdb-detection-gcc5.patch ]; + + nativeBuildInputs = [ autoconf ]; buildInputs = [ openssl cyrus_sasl db groff ]; + # NOTE: Only needed for the gcc5 patch + preConfigure = '' + autoconf + ''; + configureFlags = [ "--enable-overlays" "--disable-dependency-tracking" # speeds up one-time build diff --git a/pkgs/development/libraries/openldap/fix-libdb-detection-gcc5.patch b/pkgs/development/libraries/openldap/fix-libdb-detection-gcc5.patch new file mode 100644 index 000000000000..40ba9de73757 --- /dev/null +++ b/pkgs/development/libraries/openldap/fix-libdb-detection-gcc5.patch @@ -0,0 +1,43 @@ +From f0409f40dab6013d1aec05f5c86ae31d2f49b485 Mon Sep 17 00:00:00 2001 +From: Jan Synacek <jsynacek@redhat.com> +Date: Wed, 11 Feb 2015 10:32:28 +0100 +Subject: [PATCH] fix libdb detection with gcc 5 + +The old cpp version generated: +__db_version 5 + +The new output: +__db_version + 5 + +Running cpp with -P (inhibit linemarkers generation) fixes this when using gcc 5. +Behavior with older versions of gcc is not changed. +--- + build/openldap.m4 | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/build/openldap.m4 b/build/openldap.m4 +index caf8fc2..bdcb4d6 100644 +--- a/build/openldap.m4 ++++ b/build/openldap.m4 +@@ -328,7 +328,7 @@ AC_DEFUN([OL_BDB_HEADER_VERSION], + #endif + __db_version DB_VERSION_MAJOR + ]) +- set X `eval "$ac_cpp conftest.$ac_ext" | $EGREP __db_version` none none ++ set X `eval "$ac_cpp -P conftest.$ac_ext" | $EGREP __db_version` none none + ol_cv_bdb_major=${3} + ]) + case $ol_cv_bdb_major in [[1-9]]*) : ;; *) +@@ -344,7 +344,7 @@ AC_CACHE_CHECK([for Berkeley DB minor version in db.h], [ol_cv_bdb_minor],[ + #endif + __db_version DB_VERSION_MINOR + ]) +- set X `eval "$ac_cpp conftest.$ac_ext" | $EGREP __db_version` none none ++ set X `eval "$ac_cpp -P conftest.$ac_ext" | $EGREP __db_version` none none + ol_cv_bdb_minor=${3} + ]) + case $ol_cv_bdb_minor in [[0-9]]*) : ;; *) +-- +2.1.0 + diff --git a/pkgs/development/libraries/openssl/1.0.2.x.nix b/pkgs/development/libraries/openssl/1.0.2.x.nix index 18c533ea1886..528674401919 100644 --- a/pkgs/development/libraries/openssl/1.0.2.x.nix +++ b/pkgs/development/libraries/openssl/1.0.2.x.nix @@ -2,7 +2,7 @@ , withCryptodev ? false, cryptodevHeaders }: let - name = "openssl-1.0.2a"; + name = "openssl-1.0.2c"; opensslCrossSystem = stdenv.lib.attrByPath [ "openssl" "system" ] (throw "openssl needs its platform name cross building" null) @@ -46,7 +46,7 @@ stdenv.mkDerivation { "http://www.openssl.org/source/${name}.tar.gz" "http://openssl.linux-mirror.org/source/${name}.tar.gz" ]; - sha256 = "0jijgzf72659pikms2bc5w31h78xrd1h5zp2r01an2h340y3kdhm"; + sha256 = "10vasdg52qiyqvgbp14n9z7ghglmhzvag9qpiz2nfqssycvvlf00"; }; patches = (patchesCross false) ++ extraPatches; diff --git a/pkgs/development/libraries/proj/default.nix b/pkgs/development/libraries/proj/default.nix index 85962d56cc30..597dc2c4786d 100644 --- a/pkgs/development/libraries/proj/default.nix +++ b/pkgs/development/libraries/proj/default.nix @@ -1,26 +1,18 @@ { stdenv, fetchurl }: stdenv.mkDerivation { - name = "proj-4.8.0"; + name = "proj-4.9.1"; src = fetchurl { - url = http://download.osgeo.org/proj/proj-4.8.0.tar.gz; - sha256 = "1dfim63ks298204lv2z0v16njz6fs7bf0m4icy09i3ffzvqdpcid"; + url = http://download.osgeo.org/proj/proj-4.9.1.tar.gz; + sha256 = "06f36s7yi6yky92g235kj9wkcckm04qgzxnj0fla3icb7y7ki87w"; }; - postConfigure = '' - patch src/Makefile <<EOF - 272c272 - < include_HEADERS = proj_api.h org_proj4_Projections.h - --- - > include_HEADERS = proj_api.h org_proj4_Projections.h projects.h - EOF - ''; - meta = with stdenv.lib; { description = "Cartographic Projections Library"; homepage = http://trac.osgeo.org/proj/; license = licenses.mit; platforms = platforms.linux; + maintainers = with maintainers; [ vbgl ]; }; } diff --git a/pkgs/development/libraries/qrupdate/default.nix b/pkgs/development/libraries/qrupdate/default.nix index 465ec7eebb2b..aaa9ab8a61ad 100644 --- a/pkgs/development/libraries/qrupdate/default.nix +++ b/pkgs/development/libraries/qrupdate/default.nix @@ -1,29 +1,34 @@ { stdenv , fetchurl , gfortran -, liblapack +, openblas }: stdenv.mkDerivation { name = "qrupdate-1.1.2"; src = fetchurl { url = mirror://sourceforge/qrupdate/qrupdate-1.1.2.tar.gz ; - sha256 = "024f601685phcm1pg8lhif3lpy5j9j0k6n0r46743g4fvh8wg8g2"; + sha256 = "024f601685phcm1pg8lhif3lpy5j9j0k6n0r46743g4fvh8wg8g2"; }; - - configurePhase = '' - export PREFIX=$out - sed -i -e 's,^BLAS=.*,BLAS=-L${liblapack}/lib -L${liblapack.blas} -lcblas -lf77blas -latlas,' \ - -e 's,^LAPACK=.*,LAPACK=-L${liblapack}/lib -llapack -lcblas -lf77blas -latlas,' \ - Makeconf - ''; + + configurePhase = + '' + export PREFIX=$out + sed -i -e 's,^BLAS=.*,BLAS=-L${openblas}/lib -lopenblas,' \ + -e 's,^LAPACK=.*,LAPACK=-L${openblas}/lib -lopenblas,' \ + Makeconf + '' + + stdenv.lib.optionalString openblas.blas64 + '' + sed -i Makeconf -e '/^FFLAGS=.*/ s/$/-fdefault-integer-8/' + ''; doCheck = true; checkTarget = "test"; - buildTarget = "lib"; + buildFlags = [ "lib" "solib" ]; + + installTargets = "install"; - installTarget = "install-staticlib"; - - buildInputs = [ gfortran liblapack ]; + buildInputs = [ gfortran openblas ]; } diff --git a/pkgs/development/libraries/qt-5/5.4/0100-ssl.patch b/pkgs/development/libraries/qt-5/5.4/0100-ssl.patch new file mode 100644 index 000000000000..4607274de74c --- /dev/null +++ b/pkgs/development/libraries/qt-5/5.4/0100-ssl.patch @@ -0,0 +1,13 @@ +diff --git a/qtbase/src/network/ssl/qsslsocket_openssl.cpp b/qtbase/src/network/ssl/qsslsocket_openssl.cpp +index 8833e3f..c56d381 100644 +--- a/qtbase/src/network/ssl/qsslsocket_openssl.cpp ++++ b/qtbase/src/network/ssl/qsslsocket_openssl.cpp +@@ -47,7 +47,7 @@ + ****************************************************************************/ + + //#define QSSLSOCKET_DEBUG +-//#define QT_DECRYPT_SSL_TRAFFIC ++#define QT_DECRYPT_SSL_TRAFFIC + + #include "qssl_p.h" + #include "qsslsocket_openssl_p.h" diff --git a/pkgs/development/libraries/qt-5/5.4/default.nix b/pkgs/development/libraries/qt-5/5.4/default.nix index c7e3a5c6123d..139bba2db89e 100644 --- a/pkgs/development/libraries/qt-5/5.4/default.nix +++ b/pkgs/development/libraries/qt-5/5.4/default.nix @@ -20,6 +20,7 @@ # options , developerBuild ? false +, decryptSslTraffic ? false }: with autonix; @@ -61,7 +62,7 @@ let # GNOME dependencies are not used unless gtkStyle == true inherit (gnome) libgnomeui GConf gnome_vfs; bison = bison2; # error: too few arguments to function 'int yylex(... - inherit developerBuild srcs version; + inherit developerBuild srcs version decryptSslTraffic; }; connectivity = callPackage diff --git a/pkgs/development/libraries/qt-5/5.4/qtbase.nix b/pkgs/development/libraries/qt-5/5.4/qtbase.nix index 9e11dcdde868..7ef39a408603 100644 --- a/pkgs/development/libraries/qt-5/5.4/qtbase.nix +++ b/pkgs/development/libraries/qt-5/5.4/qtbase.nix @@ -20,6 +20,7 @@ , buildTests ? false , developerBuild ? false , gtkStyle ? false, libgnomeui, GConf, gnome_vfs, gtk +, decryptSslTraffic ? false }: with stdenv.lib; @@ -68,7 +69,8 @@ stdenv.mkDerivation { (substituteAll { src = ./0011-dlopen-openssl.patch; inherit openssl; }) (substituteAll { src = ./0012-dlopen-dbus.patch; dbus_libs = dbus; }) ./0013-xdg_config_dirs.patch - ]; + ] + ++ (optional decryptSslTraffic ./0100-ssl.patch); preConfigure = '' export LD_LIBRARY_PATH="$PWD/qtbase/lib:$PWD/qtbase/plugins/platforms:$PWD/qttools/lib:$LD_LIBRARY_PATH" diff --git a/pkgs/development/libraries/rabbitmq-c/default.nix b/pkgs/development/libraries/rabbitmq-c/default.nix index b9962c2a2d7d..639c8fb1eadd 100644 --- a/pkgs/development/libraries/rabbitmq-c/default.nix +++ b/pkgs/development/libraries/rabbitmq-c/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "rabbitmq-c-${version}"; - version = "0.6.0"; + version = "0.7.0"; src = fetchFromGitHub { owner = "alanxz"; repo = "rabbitmq-c"; rev = "v${version}"; - sha256 = "00264mvwwcibd36w9a3s3cv2x7pvz88al64q2maaw1kbd9mg1ky5"; + sha256 = "1nfb82lbccr46wr4a2fsrkvpvdvmnyx8kn275hvdfz7mxpkd5qy6"; }; buildInputs = [ cmake openssl popt xmlto ]; diff --git a/pkgs/development/libraries/science/math/arpack/default.nix b/pkgs/development/libraries/science/math/arpack/default.nix index 01bb3371f5e2..c896ecca4728 100644 --- a/pkgs/development/libraries/science/math/arpack/default.nix +++ b/pkgs/development/libraries/science/math/arpack/default.nix @@ -1,4 +1,6 @@ -{ stdenv, fetchurl, gfortran, atlasWithLapack }: +{ stdenv, fetchurl, gfortran, openblas }: + +with stdenv.lib; let version = "3.2.0"; @@ -10,10 +12,15 @@ stdenv.mkDerivation { sha256 = "1fwch6vipms1ispzg2djvbzv5wag36f1dmmr3xs3mbp6imfyhvff"; }; - buildInputs = [ gfortran atlasWithLapack ]; + buildInputs = [ gfortran openblas ]; # Auto-detection fails because gfortran brings in BLAS by default - configureFlags="--with-blas=-latlas --with-lapack=-latlas"; + configureFlags = [ + "--with-blas=-lopenblas" + "--with-lapack=-lopenblas" + ]; + + FFLAGS = optional openblas.blas64 "-fdefault-integer-8"; meta = { homepage = "http://forge.scilab.org/index.php/p/arpack-ng/"; diff --git a/pkgs/development/libraries/science/math/ipopt/default.nix b/pkgs/development/libraries/science/math/ipopt/default.nix index 4dd1ca46e956..89d2a242f963 100644 --- a/pkgs/development/libraries/science/math/ipopt/default.nix +++ b/pkgs/development/libraries/science/math/ipopt/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, unzip, blas, liblapack, gfortran }: +{ stdenv, fetchurl, unzip, openblas, gfortran }: stdenv.mkDerivation rec { version = "3.12.3"; @@ -13,9 +13,14 @@ stdenv.mkDerivation rec { export CXXDEFS="-DHAVE_RAND -DHAVE_CSTRING -DHAVE_CSTDIO" ''; + configureFlags = [ + "--with-blas-lib=-lopenblas" + "--with-lapack-lib=-lopenblas" + ]; + nativeBuildInputs = [ unzip ]; - buildInputs = [ gfortran blas liblapack ]; + buildInputs = [ gfortran openblas ]; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/science/math/openblas/0.2.10.nix b/pkgs/development/libraries/science/math/openblas/0.2.10.nix deleted file mode 100644 index ec4422ce8951..000000000000 --- a/pkgs/development/libraries/science/math/openblas/0.2.10.nix +++ /dev/null @@ -1,37 +0,0 @@ -{ stdenv, fetchurl, gfortran, perl, liblapack, config }: - -let local = config.openblas.preferLocalBuild or false; - localTarget = config.openblas.target or ""; -in -stdenv.mkDerivation rec { - version = "0.2.10"; - - name = "openblas-${version}"; - src = fetchurl { - url = "https://github.com/xianyi/OpenBLAS/tarball/v${version}"; - sha256 = "06i0q4qnd5q5xljzrgvda0gjsczc6l2pl9hw6dn2qjpw38al73za"; - name = "openblas-${version}.tar.gz"; - }; - - preBuild = "cp ${liblapack.src} lapack-${liblapack.meta.version}.tgz"; - - buildInputs = [gfortran perl]; - - cpu = builtins.head (stdenv.lib.splitString "-" stdenv.system); - - target = if local then localTarget else - if cpu == "i686" then "P2" else - if cpu == "x86_64" then "CORE2" else - # allow autodetect - ""; - - makeFlags = "${if target != "" then "TARGET=" else ""}${target} FC=gfortran CC=cc PREFIX=\"\$(out)\" INTERFACE64=1"; - - meta = with stdenv.lib; { - description = "Basic Linear Algebra Subprograms"; - license = licenses.bsd3; - homepage = "https://github.com/xianyi/OpenBLAS"; - platforms = [ "x86_64-linux" ]; - maintainers = with maintainers; [ ttuegel ]; - }; -} diff --git a/pkgs/development/libraries/science/math/openblas/0.2.2.nix b/pkgs/development/libraries/science/math/openblas/0.2.2.nix deleted file mode 100644 index c476dac955ad..000000000000 --- a/pkgs/development/libraries/science/math/openblas/0.2.2.nix +++ /dev/null @@ -1,37 +0,0 @@ -{ stdenv, fetchurl, gfortran, perl, liblapack, config }: - -let local = config.openblas.preferLocalBuild or false; - localTarget = config.openblas.target or ""; -in -stdenv.mkDerivation rec { - version = "0.2.2"; - - name = "openblas-${version}"; - src = fetchurl { - url = "https://github.com/xianyi/OpenBLAS/tarball/v${version}"; - sha256 = "13kdx3knff5ajnmgn419g0dnh83plin07p7akwamr3v7z5qfrzqr"; - name = "openblas-${version}.tar.gz"; - }; - - preBuild = "cp ${liblapack.src} lapack-${liblapack.meta.version}.tgz"; - - buildInputs = [gfortran perl]; - - cpu = builtins.head (stdenv.lib.splitString "-" stdenv.system); - - target = if local then localTarget else - if cpu == "i686" then "P2" else - if cpu == "x86_64" then "CORE2" else - # allow autodetect - ""; - - makeFlags = "${if target != "" then "TARGET=" else ""}${target} FC=gfortran CC=cc PREFIX=\"\$(out)\""; - - meta = with stdenv.lib; { - description = "Basic Linear Algebra Subprograms"; - license = licenses.bsd3; - homepage = "https://github.com/xianyi/OpenBLAS"; - platforms = [ "x86_64-linux" ]; - maintainers = with maintainers; [ ttuegel ]; - }; -} diff --git a/pkgs/development/libraries/science/math/openblas/default.nix b/pkgs/development/libraries/science/math/openblas/default.nix index 67d95f97e074..a4bf1efbb731 100644 --- a/pkgs/development/libraries/science/math/openblas/default.nix +++ b/pkgs/development/libraries/science/math/openblas/default.nix @@ -1,22 +1,24 @@ -{ stdenv, fetchurl, gfortran, perl, liblapack, config, coreutils }: +{ stdenv, fetchurl, gfortran, perl, liblapack, config, coreutils +# Most packages depending on openblas expect integer width to match pointer width, +# but some expect to use 32-bit integers always (for compatibility with reference BLAS). +, blas64 ? null +}: with stdenv.lib; let local = config.openblas.preferLocalBuild or false; binary = - { - i686-linux = "32"; + { i686-linux = "32"; x86_64-linux = "64"; x86_64-darwin = "64"; }."${stdenv.system}" or (throw "unsupported system: ${stdenv.system}"); genericFlags = - [ - "DYNAMIC_ARCH=1" + [ "DYNAMIC_ARCH=1" "NUM_THREADS=64" - "BINARY=${binary}" ]; localFlags = config.openblas.flags or optionals (hasAttr "target" config.openblas) [ "TARGET=${config.openblas.target}" ]; + blas64Orig = blas64; in stdenv.mkDerivation rec { version = "0.2.14"; @@ -43,9 +45,13 @@ stdenv.mkDerivation rec { # thus is not an explicit dependency. "CC=${if stdenv.isDarwin then "clang" else "gcc"}" ''PREFIX="''$(out)"'' - "INTERFACE64=1" + "BINARY=${binary}" + "USE_OPENMP=${if stdenv.isDarwin then "0" else "1"}" + "INTERFACE64=${if blas64 then "1" else "0"}" ]; + blas64 = if blas64Orig != null then blas64Orig else hasPrefix "x86_64" stdenv.system; + meta = with stdenv.lib; { description = "Basic Linear Algebra Subprograms"; license = licenses.bsd3; diff --git a/pkgs/development/libraries/science/math/suitesparse/0001-disable-metis.patch b/pkgs/development/libraries/science/math/suitesparse/0001-disable-metis.patch deleted file mode 100644 index b0f7715f755d..000000000000 --- a/pkgs/development/libraries/science/math/suitesparse/0001-disable-metis.patch +++ /dev/null @@ -1,36 +0,0 @@ -From 456b26d0c9101adaa5876954baac0ca0e872dab6 Mon Sep 17 00:00:00 2001 -From: Thomas Tuegel <ttuegel@gmail.com> -Date: Mon, 15 Dec 2014 10:18:01 -0600 -Subject: [PATCH 1/3] disable metis - ---- - SuiteSparse_config/SuiteSparse_config.mk | 6 +++--- - 1 file changed, 3 insertions(+), 3 deletions(-) - -diff --git a/SuiteSparse_config/SuiteSparse_config.mk b/SuiteSparse_config/SuiteSparse_config.mk -index ba2da23..e1514bf 100644 ---- a/SuiteSparse_config/SuiteSparse_config.mk -+++ b/SuiteSparse_config/SuiteSparse_config.mk -@@ -212,8 +212,8 @@ XERBLA = - # The path is relative to where it is used, in CHOLMOD/Lib, CHOLMOD/MATLAB, etc. - # You may wish to use an absolute path. METIS is optional. Compile - # CHOLMOD with -DNPARTITION if you do not wish to use METIS. --METIS_PATH = ../../metis-4.0 --METIS = ../../metis-4.0/libmetis.a -+# METIS_PATH = ../../metis-4.0 -+# METIS = ../../metis-4.0/libmetis.a - - #------------------------------------------------------------------------------ - # UMFPACK configuration: -@@ -273,7 +273,7 @@ UMFPACK_CONFIG = - # -DNSUNPERF for Solaris only. If defined, do not use the Sun - # Performance Library - --CHOLMOD_CONFIG = $(GPU_CONFIG) -+CHOLMOD_CONFIG = $(GPU_CONFIG) -DNPARTITION - - # uncomment this line to compile CHOLMOD without METIS: - # CHOLMOD_CONFIG = -DNPARTITION --- -2.1.3 - diff --git a/pkgs/development/libraries/science/math/suitesparse/0002-set-install-dir.patch b/pkgs/development/libraries/science/math/suitesparse/0002-set-install-dir.patch deleted file mode 100644 index ef861f68091a..000000000000 --- a/pkgs/development/libraries/science/math/suitesparse/0002-set-install-dir.patch +++ /dev/null @@ -1,27 +0,0 @@ -From e0fee492a315ce1ef8697b056af210beb1465334 Mon Sep 17 00:00:00 2001 -From: Thomas Tuegel <ttuegel@gmail.com> -Date: Mon, 15 Dec 2014 10:18:12 -0600 -Subject: [PATCH 2/3] set install dir - ---- - SuiteSparse_config/SuiteSparse_config.mk | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/SuiteSparse_config/SuiteSparse_config.mk b/SuiteSparse_config/SuiteSparse_config.mk -index e1514bf..f1046a6 100644 ---- a/SuiteSparse_config/SuiteSparse_config.mk -+++ b/SuiteSparse_config/SuiteSparse_config.mk -@@ -95,8 +95,8 @@ F77LIB = - # LIB = -lm - - # For "make install" --INSTALL_LIB = /usr/local/lib --INSTALL_INCLUDE = /usr/local/include -+INSTALL_LIB = @out@/lib -+INSTALL_INCLUDE = @out@/include - - # Which version of MAKE you are using (default is "make") - # MAKE = make --- -2.1.3 - diff --git a/pkgs/development/libraries/science/math/suitesparse/0003-blas-lapack-flags.patch b/pkgs/development/libraries/science/math/suitesparse/0003-blas-lapack-flags.patch deleted file mode 100644 index db0b1c456558..000000000000 --- a/pkgs/development/libraries/science/math/suitesparse/0003-blas-lapack-flags.patch +++ /dev/null @@ -1,27 +0,0 @@ -From a99cca30cfd965683564ae024e8ecc615c61697a Mon Sep 17 00:00:00 2001 -From: Thomas Tuegel <ttuegel@gmail.com> -Date: Mon, 15 Dec 2014 10:24:08 -0600 -Subject: [PATCH 3/3] blas lapack flags - ---- - SuiteSparse_config/SuiteSparse_config.mk | 4 ++-- - 1 file changed, 2 insertions(+), 2 deletions(-) - -diff --git a/SuiteSparse_config/SuiteSparse_config.mk b/SuiteSparse_config/SuiteSparse_config.mk -index f1046a6..1710162 100644 ---- a/SuiteSparse_config/SuiteSparse_config.mk -+++ b/SuiteSparse_config/SuiteSparse_config.mk -@@ -119,8 +119,8 @@ INSTALL_INCLUDE = @out@/include - # naming the BLAS and LAPACK library (*.a or *.so) files. - - # This is probably slow ... it might connect to the Standard Reference BLAS: -- BLAS = -lblas -lgfortran -- LAPACK = -llapack -+ BLAS = @blasFlags@ -+ LAPACK = @lapackFlags@ - - # MKL - # BLAS = -Wl,--start-group $(MKLROOT)/lib/intel64/libmkl_intel_lp64.a $(MKLROOT)/lib/intel64/libmkl_core.a $(MKLROOT)/lib/intel64/libmkl_intel_thread.a -Wl,--end-group -lpthread -lm --- -2.1.3 - diff --git a/pkgs/development/libraries/science/math/suitesparse/4.2.nix b/pkgs/development/libraries/science/math/suitesparse/4.2.nix index 4d27701b135a..16174a80212f 100644 --- a/pkgs/development/libraries/science/math/suitesparse/4.2.nix +++ b/pkgs/development/libraries/science/math/suitesparse/4.2.nix @@ -1,22 +1,44 @@ -{ stdenv, fetchurl, blas, liblapack, gfortran } : +{ stdenv, fetchurl, gfortran, openblas }: + +let + int_t = if openblas.blas64 then "int64_t" else "int32_t"; +in stdenv.mkDerivation rec { version = "4.2.1"; name = "suitesparse-${version}"; src = fetchurl { url = "http://www.cise.ufl.edu/research/sparse/SuiteSparse/SuiteSparse-${version}.tar.gz" ; - sha256 = "1ga69637x7kdkiy3w3lq9dvva7220bdangv2lch2wx1hpi83h0p8"; + sha256 = "1ga69637x7kdkiy3w3lq9dvva7220bdangv2lch2wx1hpi83h0p8"; }; - buildInputs = [blas liblapack gfortran] ; - patches = [./disable-metis.patch]; + + nativeBuildInputs = [ gfortran ]; + buildInputs = [ openblas ]; preConfigure = '' - export PREFIX=$out mkdir -p $out/lib mkdir -p $out/include + + sed -i "SuiteSparse_config/SuiteSparse_config.mk" \ + -e 's/METIS .*$/METIS =/' \ + -e 's/METIS_PATH .*$/METIS_PATH =/' \ + -e '/CHOLMOD_CONFIG/ s/$/-DNPARTITION -DLONGBLAS=${int_t}/' \ + -e '/UMFPACK_CONFIG/ s/$/-DLONGBLAS=${int_t}/' ''; - makeFlags = ''PREFIX=\"$(out)\" INSTALL_LIB=$(out)/lib INSTALL_INCLUDE=$(out)/include''; + makeFlags = [ + "PREFIX=\"$(out)\"" + "INSTALL_LIB=$(out)/lib" + "INSTALL_INCLUDE=$(out)/include" + "BLAS=-lopenblas" + "LAPACK=" + ]; NIX_CFLAGS = "-fPIC"; + meta = with stdenv.lib; { + homepage = http://faculty.cse.tamu.edu/davis/suitesparse.html; + description = "A suite of sparse matrix algorithms"; + license = with licenses; [ bsd2 gpl2Plus lgpl21Plus ]; + maintainers = with maintainers; [ ttuegel ]; + }; } diff --git a/pkgs/development/libraries/science/math/suitesparse/SuiteSparse_config.mk b/pkgs/development/libraries/science/math/suitesparse/SuiteSparse_config.mk deleted file mode 100644 index 157a20d7b5aa..000000000000 --- a/pkgs/development/libraries/science/math/suitesparse/SuiteSparse_config.mk +++ /dev/null @@ -1,452 +0,0 @@ -#=============================================================================== -# SuiteSparse_config.mk: common configuration file for the SuiteSparse -#=============================================================================== - -# This file contains all configuration settings for all packages authored or -# co-authored by Tim Davis: -# -# Package Version Description -# ------- ------- ----------- -# AMD 1.2 or later approximate minimum degree ordering -# COLAMD 2.4 or later column approximate minimum degree ordering -# CCOLAMD 1.0 or later constrained column approximate minimum degree ordering -# CAMD any constrained approximate minimum degree ordering -# UMFPACK 4.5 or later sparse LU factorization, with the BLAS -# CHOLMOD any sparse Cholesky factorization, update/downdate -# KLU 0.8 or later sparse LU factorization, BLAS-free -# BTF 0.8 or later permutation to block triangular form -# LDL 1.2 or later concise sparse LDL' -# CXSparse any extended version of CSparse (int/long, real/complex) -# SuiteSparseQR any sparse QR factorization -# RBio 2.0 or later read/write sparse matrices in Rutherford-Boeing format -# -# By design, this file is NOT included in the CSparse makefile. -# That package is fully stand-alone. CSparse is primarily for teaching; -# production code should use CXSparse. -# -# The SuiteSparse_config directory and the above packages should all appear in -# a single directory, in order for the Makefile's within each package to find -# this file. -# -# To enable an option of the form "# OPTION = ...", edit this file and -# delete the "#" in the first column of the option you wish to use. -# -# The use of METIS 4.0.1 is optional. To exclude METIS, you must compile with -# CHOLMOD_CONFIG set to -DNPARTITION. See below for details. However, if you -# do not have a metis-4.0 directory inside the SuiteSparse directory, the -# */Makefile's that optionally rely on METIS will automatically detect this -# and compile without METIS. - -#------------------------------------------------------------------------------ -# Generic configuration -#------------------------------------------------------------------------------ - -# Using standard definitions from the make environment, typically: -# -# CC cc C compiler -# CXX g++ C++ compiler -# CFLAGS [ ] flags for C and C++ compiler -# CPPFLAGS [ ] flags for C and C++ compiler -# TARGET_ARCH [ ] target architecture -# FFLAGS [ ] flags for Fortran compiler -# RM rm -f delete a file -# AR ar create a static *.a library archive -# ARFLAGS rv flags for ar -# MAKE make make itself (sometimes called gmake) -# -# You can redefine them here, but by default they are used from the -# default make environment. - -# To use OpenMP add -openmp to the CFLAGS -# If OpenMP is used, it is recommended to define CHOLMOD_OMP_NUM_THREADS -# as the number of cores per socket on the machine being used to maximize -# memory performance - CFLAGS = -# CFLAGS = -g -# for the icc compiler and OpenMP: -# CFLAGS = -openmp - -# C and C++ compiler flags. The first three are standard for *.c and *.cpp -# Add -DNTIMER if you do use any timing routines (otherwise -lrt is required). -# CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -O3 -fexceptions -fPIC -DNTIMER - CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -O3 -fexceptions -fPIC -# for the MKL BLAS: -# CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -O3 -fexceptions -fPIC -I$(MKLROOT)/include -D_GNU_SOURCE -# with no optimization: -# CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -fexceptions -fPIC - -# ranlib, and ar, for generating libraries. If you don't need ranlib, -# just change it to RANLAB = echo -RANLIB = ranlib -ARCHIVE = $(AR) $(ARFLAGS) - -# copy and delete a file -CP = cp -f -MV = mv -f - -# Fortran compiler (not required for 'make' or 'make library') -F77 = gfortran -F77FLAGS = $(FFLAGS) -O -F77LIB = - -# C and Fortran libraries. Remove -lrt if you don't have it. - LIB = -lm -lrt -# Using the following requires CF = ... -DNTIMER on POSIX C systems. -# LIB = -lm - -# For "make install" -INSTALL_LIB = @out@/lib -INSTALL_INCLUDE = @out@/include - -# Which version of MAKE you are using (default is "make") -# MAKE = make -# MAKE = gmake - -#------------------------------------------------------------------------------ -# BLAS and LAPACK configuration: -#------------------------------------------------------------------------------ - -# UMFPACK and CHOLMOD both require the BLAS. CHOLMOD also requires LAPACK. -# See Kazushige Goto's BLAS at http://www.cs.utexas.edu/users/flame/goto/ or -# http://www.tacc.utexas.edu/~kgoto/ for the best BLAS to use with CHOLMOD. -# LAPACK is at http://www.netlib.org/lapack/ . You can use the standard -# Fortran LAPACK along with Goto's BLAS to obtain very good performance. -# CHOLMOD gets a peak numeric factorization rate of 3.6 Gflops on a 3.2 GHz -# Pentium 4 (512K cache, 4GB main memory) with the Goto BLAS, and 6 Gflops -# on a 2.5Ghz dual-core AMD Opteron. - -# These settings will probably not work, since there is no fixed convention for -# naming the BLAS and LAPACK library (*.a or *.so) files. - -# This is probably slow ... it might connect to the Standard Reference BLAS: - BLAS = -lf77blas -latlas -lcblas -lgfortran - LAPACK = -llapack -latlas -lcblas - -# MKL -# BLAS = -Wl,--start-group $(MKLROOT)/lib/intel64/libmkl_intel_lp64.a $(MKLROOT)/lib/intel64/libmkl_core.a $(MKLROOT)/lib/intel64/libmkl_intel_thread.a -Wl,--end-group -lpthread -lm -# LAPACK = - -# ACML -# BLAS = -lacml -lgfortran -# LAPACK = - -# OpenBLAS -# BLAS = -lopenblas -# LAPACK = - -# NOTE: this next option for the "Goto BLAS" has nothing to do with a "goto" -# statement. Rather, the Goto BLAS is written by Dr. Kazushige Goto. -# Using the Goto BLAS: -# BLAS = -lgoto -lgfortran -lgfortranbegin -# BLAS = -lgoto2 -lgfortran -lgfortranbegin -lpthread - -# Using non-optimized versions: -# BLAS = -lblas_plain -lgfortran -lgfortranbegin -# LAPACK = -llapack_plain - -# BLAS = -lblas_plain -lgfortran -lgfortranbegin -# LAPACK = -llapack - -# The BLAS might not contain xerbla, an error-handling routine for LAPACK and -# the BLAS. Also, the standard xerbla requires the Fortran I/O library, and -# stops the application program if an error occurs. A C version of xerbla -# distributed with this software (SuiteSparse_config/xerbla/libcerbla.a) -# includes a Fortran-callable xerbla routine that prints nothing and does not -# stop the application program. This is optional. - -# XERBLA = ../../SuiteSparse_config/xerbla/libcerbla.a - -# If you wish to use the XERBLA in LAPACK and/or the BLAS instead, -# use this option: -XERBLA = - -# If you wish to use the Fortran SuiteSparse_config/xerbla/xerbla.f instead, -# use this: - -# XERBLA = ../../SuiteSparse_config/xerbla/libxerbla.a - -#------------------------------------------------------------------------------ -# GPU configuration for CHOLMOD and SPQR -#------------------------------------------------------------------------------ - -# no cuda - CUDA_ROOT = - GPU_BLAS_PATH = - GPU_CONFIG = - CUDA_PATH = - CUDART_LIB = - CUBLAS_LIB = - CUDA_INC_PATH = - NV20 = - NV30 = - NV35 = - NVCC = echo - NVCCFLAGS = - -# with cuda for CHOLMOD -# CUDA_ROOT = /usr/local/cuda -# GPU_BLAS_PATH = $(CUDA_ROOT) -# with 4 cores (default): -# GPU_CONFIG = -I$(CUDA_ROOT)/include -DGPU_BLAS -# with 10 cores: -# GPU_CONFIG = -I$(CUDA_ROOT)/include -DGPU_BLAS -DCHOLMOD_OMP_NUM_THREADS=10 -# CUDA_PATH = $(CUDA_ROOT) -# CUDART_LIB = $(CUDA_ROOT)/lib64/libcudart.so -# CUBLAS_LIB = $(CUDA_ROOT)/lib64/libcublas.so -# CUDA_INC_PATH = $(CUDA_ROOT)/include/ -# NV20 = -arch=sm_20 -Xcompiler -fPIC -# NV30 = -arch=sm_30 -Xcompiler -fPIC -# NV35 = -arch=sm_35 -Xcompiler -fPIC -# NVCC = $(CUDA_ROOT)/bin/nvcc -# NVCCFLAGS = $(NV20) -O3 -gencode=arch=compute_20,code=sm_20 -gencode=arch=compute_30,code=sm_30 -gencode=arch=compute_35,code=sm_35 - -# was NVCC = $(CUDA_ROOT)/bin/nvcc $(NV35) $(NV30) $(NV20) - -#------------------------------------------------------------------------------ -# METIS, optionally used by CHOLMOD -#------------------------------------------------------------------------------ - -# If you do not have METIS, or do not wish to use it in CHOLMOD, you must -# compile CHOLMOD with the -DNPARTITION flag. - -# The path is relative to where it is used, in CHOLMOD/Lib, CHOLMOD/MATLAB, etc. -# You may wish to use an absolute path. METIS is optional. Compile -# CHOLMOD with -DNPARTITION if you do not wish to use METIS. -# METIS_PATH = ../../metis-4.0 -# METIS = ../../metis-4.0/libmetis.a - -#------------------------------------------------------------------------------ -# UMFPACK configuration: -#------------------------------------------------------------------------------ - -# Configuration flags for UMFPACK. See UMFPACK/Source/umf_config.h for details. -# -# -DNBLAS do not use the BLAS. UMFPACK will be very slow. -# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by -# LAPACK and the BLAS (defaults to 'int') -# -DNSUNPERF do not use the Sun Perf. Library (default is use it on Solaris) -# -DNRECIPROCAL do not multiply by the reciprocal -# -DNO_DIVIDE_BY_ZERO do not divide by zero -# -DNCHOLMOD do not use CHOLMOD as a ordering method. If -DNCHOLMOD is -# included in UMFPACK_CONFIG, then UMFPACK does not rely on -# CHOLMOD, CAMD, CCOLAMD, COLAMD, and METIS. - -UMFPACK_CONFIG = - -# uncomment this line to compile UMFPACK without CHOLMOD: -# UMFPACK_CONFIG = -DNCHOLMOD - -#------------------------------------------------------------------------------ -# CHOLMOD configuration -#------------------------------------------------------------------------------ - -# CHOLMOD Library Modules, which appear in libcholmod.a: -# Core requires: none -# Check requires: Core -# Cholesky requires: Core, AMD, COLAMD. optional: Partition, Supernodal -# MatrixOps requires: Core -# Modify requires: Core -# Partition requires: Core, CCOLAMD, METIS. optional: Cholesky -# Supernodal requires: Core, BLAS, LAPACK -# -# CHOLMOD test/demo Modules (all are GNU GPL, do not appear in libcholmod.a): -# Tcov requires: Core, Check, Cholesky, MatrixOps, Modify, Supernodal -# optional: Partition -# Valgrind same as Tcov -# Demo requires: Core, Check, Cholesky, MatrixOps, Supernodal -# optional: Partition -# -# Configuration flags: -# -DNCHECK do not include the Check module. License GNU LGPL -# -DNCHOLESKY do not include the Cholesky module. License GNU LGPL -# -DNPARTITION do not include the Partition module. License GNU LGPL -# also do not include METIS. -# -DNCAMD do not use CAMD, etc from Partition module. GNU LGPL -# -DNGPL do not include any GNU GPL Modules in the CHOLMOD library: -# -DNMATRIXOPS do not include the MatrixOps module. License GNU GPL -# -DNMODIFY do not include the Modify module. License GNU GPL -# -DNSUPERNODAL do not include the Supernodal module. License GNU GPL -# -# -DNPRINT do not print anything. -# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by -# LAPACK and the BLAS (defaults to 'int') -# -DNSUNPERF for Solaris only. If defined, do not use the Sun -# Performance Library - -CHOLMOD_CONFIG = $(GPU_CONFIG) -DNPARTITION - -# uncomment this line to compile CHOLMOD without METIS: -# CHOLMOD_CONFIG = -DNPARTITION - -#------------------------------------------------------------------------------ -# SuiteSparseQR configuration: -#------------------------------------------------------------------------------ - -# The SuiteSparseQR library can be compiled with the following options: -# -# -DNPARTITION do not include the CHOLMOD partition module -# -DNEXPERT do not include the functions in SuiteSparseQR_expert.cpp -# -DHAVE_TBB enable the use of Intel's Threading Building Blocks (TBB) - -# default, without timing, without TBB: -SPQR_CONFIG = $(GPU_CONFIG) -# with TBB: -# SPQR_CONFIG = -DHAVE_TBB - -# This is needed for IBM AIX: (but not for and C codes, just C++) -# SPQR_CONFIG = -DBLAS_NO_UNDERSCORE - -# with TBB, you must select this: -# TBB = -ltbb -# without TBB: -TBB = - -#------------------------------------------------------------------------------ -# code formatting -#------------------------------------------------------------------------------ - -# Use "grep" only, if you do not have "indent" -# PRETTY = grep -v "^\#" -# PRETTY = grep -v "^\#" | indent -bl -nce -ss -bli0 -i4 -sob -l120 - PRETTY = grep -v "^\#" | indent -bl -nce -bli0 -i4 -sob -l120 - -#------------------------------------------------------------------------------ -# Linux -#------------------------------------------------------------------------------ - -# Using default compilers: -# CC = gcc -# CF = $(CFLAGS) -O3 -fexceptions - -# alternatives: -# CF = $(CFLAGS) -g -fexceptions \ -# -Wall -W -Wshadow -Wmissing-prototypes -Wstrict-prototypes \ -# -Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi \ -# -funit-at-a-time -# CF = $(CFLAGS) -O3 -fexceptions \ -# -Wall -W -Werror -Wshadow -Wmissing-prototypes -Wstrict-prototypes \ -# -Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi -# CF = $(CFLAGS) -O3 -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -# CF = $(CFLAGS) -O3 -# CF = $(CFLAGS) -O3 -g -fexceptions -# CF = $(CFLAGS) -g -fexceptions \ -# -Wall -W -Wshadow \ -# -Wredundant-decls -Wdisabled-optimization -ansi - -# consider: -# -fforce-addr -fmove-all-movables -freduce-all-givs -ftsp-ordering -# -frename-registers -ffast-math -funroll-loops - -# Using the Goto BLAS: -# BLAS = -lgoto -lfrtbegin -lg2c $(XERBLA) -lpthread - -# Using Intel's icc and ifort compilers: -# (does not work for mexFunctions unless you add a mexopts.sh file) -# F77 = ifort -# CC = icc -# CF = $(CFLAGS) -O3 -xN -vec_report=0 -# CF = $(CFLAGS) -g - -# 64bit: -# F77FLAGS = -O -m64 -# CF = $(CFLAGS) -O3 -fexceptions -m64 -# BLAS = -lgoto64 -lfrtbegin -lg2c -lpthread $(XERBLA) -# LAPACK = -llapack64 - -# SUSE Linux 10.1, AMD Opteron, with GOTO Blas -# F77 = gfortran -# BLAS = -lgoto_opteron64 -lgfortran - -# SUSE Linux 10.1, Intel Pentium, with GOTO Blas -# F77 = gfortran -# BLAS = -lgoto -lgfortran - -#------------------------------------------------------------------------------ -# Mac -#------------------------------------------------------------------------------ - -# As recommended by macports, http://suitesparse.darwinports.com/ -# I've tested them myself on Mac OSX 10.6.1 and 10.6.8 (Snow Leopard), -# on my MacBook Air, and they work fine. - -# F77 = gfortran -# CF = $(CFLAGS) -O3 -fno-common -fexceptions -DNTIMER -# BLAS = -framework Accelerate -# LAPACK = -framework Accelerate -# LIB = -lm - -#------------------------------------------------------------------------------ -# Solaris -#------------------------------------------------------------------------------ - -# 32-bit -# CF = $(CFLAGS) -KPIC -dalign -xc99=%none -Xc -xlibmieee -xO5 -xlibmil -m32 - -# 64-bit -# CF = $(CFLAGS) -fast -KPIC -xc99=%none -xlibmieee -xlibmil -m64 -Xc - -# FFLAGS = -fast -KPIC -dalign -xlibmil -m64 - -# The Sun Performance Library includes both LAPACK and the BLAS: -# BLAS = -xlic_lib=sunperf -# LAPACK = - - -#------------------------------------------------------------------------------ -# Compaq Alpha -#------------------------------------------------------------------------------ - -# 64-bit mode only -# CF = $(CFLAGS) -O2 -std1 -# BLAS = -ldxml -# LAPACK = - -#------------------------------------------------------------------------------ -# IBM RS 6000 -#------------------------------------------------------------------------------ - -# BLAS = -lessl -# LAPACK = - -# 32-bit mode: -# CF = $(CFLAGS) -O4 -qipa -qmaxmem=16384 -qproto -# F77FLAGS = -O4 -qipa -qmaxmem=16384 - -# 64-bit mode: -# CF = $(CFLAGS) -O4 -qipa -qmaxmem=16384 -q64 -qproto -# F77FLAGS = -O4 -qipa -qmaxmem=16384 -q64 - -#------------------------------------------------------------------------------ -# SGI IRIX -#------------------------------------------------------------------------------ - -# BLAS = -lscsl -# LAPACK = - -# 32-bit mode -# CF = $(CFLAGS) -O - -# 64-bit mode (32 bit int's and 64-bit long's): -# CF = $(CFLAGS) -64 -# F77FLAGS = -64 - -# SGI doesn't have ranlib -# RANLIB = echo - -#------------------------------------------------------------------------------ -# AMD Opteron (64 bit) -#------------------------------------------------------------------------------ - -# BLAS = -lgoto_opteron64 -lg2c -# LAPACK = -llapack_opteron64 - -# SUSE Linux 10.1, AMD Opteron -# F77 = gfortran -# BLAS = -lgoto_opteron64 -lgfortran -# LAPACK = -llapack_opteron64 - -#------------------------------------------------------------------------------ -# remove object files and profile output -#------------------------------------------------------------------------------ - -CLEAN = *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno diff --git a/pkgs/development/libraries/science/math/suitesparse/default.nix b/pkgs/development/libraries/science/math/suitesparse/default.nix index add4ca9a08f4..f30db472b0de 100644 --- a/pkgs/development/libraries/science/math/suitesparse/default.nix +++ b/pkgs/development/libraries/science/math/suitesparse/default.nix @@ -1,34 +1,53 @@ -{ stdenv, fetchurl, substituteAll -, atlasWithLapack, gfortran }: +{ stdenv, fetchurl, gfortran, openblas }: let - name = "suitesparse-4.4.1"; + version = "4.4.4"; + name = "suitesparse-${version}"; + + int_t = if openblas.blas64 then "int64_t" else "int32_t"; in stdenv.mkDerivation { inherit name; src = fetchurl { - url = "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.4.1.tar.gz"; - sha256 = "0y8i6dizrr556xggpjyc7wijjv4jbizhssmjj4jv8n1s7zxy2z0n"; + url = "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-${version}.tar.gz"; + sha256 = "1zdn1y0ij6amj7smmcslkqgbqv9yy5cwmbyzqc9v6drzdzllgbpj"; }; - patches = [ - ./0001-disable-metis.patch - ./0002-set-install-dir.patch - (substituteAll { - src = ./0003-blas-lapack-flags.patch; - blasFlags = "-lf77blas -latlas -lcblas -lgfortran"; - lapackFlags= "-llapack -latlas -lcblas"; - }) - ]; - preConfigure = '' - substituteAllInPlace SuiteSparse_config/SuiteSparse_config.mk mkdir -p $out/lib mkdir -p $out/include + + sed -i "SuiteSparse_config/SuiteSparse_config.mk" \ + -e 's/METIS .*$/METIS =/' \ + -e 's/METIS_PATH .*$/METIS_PATH =/' \ + -e '/CHOLMOD_CONFIG/ s/$/-DNPARTITION -DLONGBLAS=${int_t}/' \ + -e '/UMFPACK_CONFIG/ s/$/-DLONGBLAS=${int_t}/' ''; + makeFlags = [ + "PREFIX=\"$(out)\"" + "INSTALL_LIB=$(out)/lib" + "INSTALL_INCLUDE=$(out)/include" + "BLAS=-lopenblas" + "LAPACK=" + ]; + + NIX_CFLAGS = "-fPIC"; + postInstall = '' + # Build and install shared library + ( + cd "$(mktemp -d)" + for i in "$out"/lib/lib*.a; do + ar -x $i + done + gcc *.o --shared -o "$out/lib/libsuitesparse.so" + ) + for i in umfpack cholmod amd camd colamd spqr; do + ln -s libsuitesparse.so "$out"/lib/lib$i.so; + done + # Install documentation outdoc=$out/share/doc/${name} mkdir -p $outdoc @@ -47,7 +66,7 @@ stdenv.mkDerivation { ''; nativeBuildInputs = [ gfortran ]; - buildInputs = [ atlasWithLapack ]; + buildInputs = [ openblas ]; meta = with stdenv.lib; { homepage = http://faculty.cse.tamu.edu/davis/suitesparse.html; diff --git a/pkgs/development/libraries/science/math/suitesparse/disable-metis.patch b/pkgs/development/libraries/science/math/suitesparse/disable-metis.patch deleted file mode 100644 index 5b735eb7d3c9..000000000000 --- a/pkgs/development/libraries/science/math/suitesparse/disable-metis.patch +++ /dev/null @@ -1,18 +0,0 @@ -diff -Nrc SuiteSparse/UMFPACK/Demo/Makefile SuiteSparse-new/UMFPACK/Demo/Makefile -*** SuiteSparse/UMFPACK/Demo/Makefile 2009-11-11 21:09:45.000000000 +0100 ---- SuiteSparse-new/UMFPACK/Demo/Makefile 2010-08-02 12:53:16.000000000 +0200 -*************** -*** 40,46 **** - ../../CAMD/Lib/libcamd.a: - ( cd ../../CAMD ; $(MAKE) library ) - -- $(METIS): -- ( cd $(METIS_PATH) && $(MAKE) ) - - UMFPACK = ../Lib/libumfpack.a ../../AMD/Lib/libamd.a \ ---- 40,44 ---- - ../../CAMD/Lib/libcamd.a: - ( cd ../../CAMD ; $(MAKE) library ) - - - UMFPACK = ../Lib/libumfpack.a ../../AMD/Lib/libamd.a \ diff --git a/pkgs/development/libraries/serf/default.nix b/pkgs/development/libraries/serf/default.nix index df8749622bea..580460d5fc09 100644 --- a/pkgs/development/libraries/serf/default.nix +++ b/pkgs/development/libraries/serf/default.nix @@ -8,7 +8,9 @@ stdenv.mkDerivation rec { sha256 = "1bphz616dv1svc50kkm8xbgyszhg3ni2dqbij99sfvjycr7bgk7c"; }; - buildInputs = [ apr scons openssl aprutil zlib kerberos pkgconfig ]; + buildInputs = [ apr scons openssl aprutil zlib ] + ++ stdenv.lib.optional (!stdenv.isCygwin) kerberos + ++ [ pkgconfig ]; configurePhase = '' ${gnused}/bin/sed -e '/^env[.]Append(BUILDERS/ienv.Append(ENV={"PATH":os.environ["PATH"]})' -i SConstruct @@ -21,7 +23,7 @@ stdenv.mkDerivation rec { APU="$(echo "${aprutil}"/bin/*-config)" CC="${ if stdenv.isDarwin then "clang" else "${stdenv.cc}/bin/gcc" }" ${ - if stdenv.isDarwin then "" else "GSSAPI=\"${kerberos}\"" + if (stdenv.isDarwin || stdenv.isCygwin) then "" else "GSSAPI=\"${kerberos}\"" } ''; diff --git a/pkgs/development/libraries/sqlite-amalgamation/default.nix b/pkgs/development/libraries/sqlite-amalgamation/default.nix new file mode 100644 index 000000000000..2ee3b6f2ecbb --- /dev/null +++ b/pkgs/development/libraries/sqlite-amalgamation/default.nix @@ -0,0 +1,33 @@ +{ lib, stdenv, fetchurl, unzip }: + +stdenv.mkDerivation { + name = "sqlite-amalgamation-201505302257"; + + src = fetchurl { + url = "https://www.sqlite.org/snapshot/sqlite-amalgamation-201505302257.zip"; + sha256 = "0488wjrpnxd61g7pcka6fckx0q8yl1k26i6q5hrmkm92qcpml76h"; + }; + + phases = [ "unpackPhase" "buildPhase" ]; + + buildInputs = [ unzip ]; + + unpackPhase = '' + unzip $src + ''; + + buildPhase = '' + mkdir -p $out + cp sqlite3.c $out/ + cp sqlite3.h $out/ + cp sqlite3ext.h $out/ + cp shell.c $out/ + ''; + + meta = { + homepage = http://www.sqlite.org/; + description = "A single C code file, named sqlite3.c, that contains all C code for the core SQLite library and the FTS3 and RTREE extensions"; + platforms = stdenv.lib.platforms.unix; + maintainers = [ lib.maintainers.lassulus ]; + }; +} diff --git a/pkgs/development/libraries/sqlite/default.nix b/pkgs/development/libraries/sqlite/default.nix index ee8aec79af15..963566e27fa7 100644 --- a/pkgs/development/libraries/sqlite/default.nix +++ b/pkgs/development/libraries/sqlite/default.nix @@ -3,11 +3,11 @@ assert interactive -> readline != null && ncurses != null; stdenv.mkDerivation { - name = "sqlite-3.8.10.1"; + name = "sqlite-3.8.10.2"; src = fetchurl { - url = "http://sqlite.org/2015/sqlite-autoconf-3081001.tar.gz"; - sha1 = "86bfed5752783fb24c051f3efac5972ce11023f0"; + url = "http://sqlite.org/2015/sqlite-autoconf-3081002.tar.gz"; + sha1 = "c2f2c17d3dc4c4e179d35cc04e4420636d48a152"; }; buildInputs = lib.optionals interactive [ readline ncurses ]; diff --git a/pkgs/development/libraries/tdb/default.nix b/pkgs/development/libraries/tdb/default.nix index 81227f0829bc..46f4bb683476 100644 --- a/pkgs/development/libraries/tdb/default.nix +++ b/pkgs/development/libraries/tdb/default.nix @@ -3,11 +3,11 @@ }: stdenv.mkDerivation rec { - name = "tdb-1.3.4"; + name = "tdb-1.3.6"; src = fetchurl { url = "mirror://samba/tdb/${name}.tar.gz"; - sha256 = "0a8pa4ar7dxkbsgv1447av2rn35a1m6l1v2s9hgz3ccwni9wv1gm"; + sha256 = "19arbbicw469q6a9m8yyaigrxzrxkb1jnajlvq1v7n2qgqjdvmw5"; }; buildInputs = [ diff --git a/pkgs/development/libraries/tevent/default.nix b/pkgs/development/libraries/tevent/default.nix index baa7e288178c..2e9c83755a69 100644 --- a/pkgs/development/libraries/tevent/default.nix +++ b/pkgs/development/libraries/tevent/default.nix @@ -3,11 +3,11 @@ }: stdenv.mkDerivation rec { - name = "tevent-0.9.24"; + name = "tevent-0.9.25"; src = fetchurl { url = "mirror://samba/tevent/${name}.tar.gz"; - sha256 = "0l1zjx2z6nhvn6gwbcvzn8w0cca53j717fwi10s7a5v1jb04rfad"; + sha256 = "0sf694bdp2l6s48gmr8hxlcpdmjbwhr9ph1faqxmkcqibbav1ppy"; }; buildInputs = [ diff --git a/pkgs/development/libraries/tk/8.5.nix b/pkgs/development/libraries/tk/8.5.nix new file mode 100644 index 000000000000..c3396dcdad22 --- /dev/null +++ b/pkgs/development/libraries/tk/8.5.nix @@ -0,0 +1,11 @@ +{ callPackage, fetchurl, tcl, ... } @ args: + +callPackage ./generic.nix (args // rec { + + src = fetchurl { + url = "mirror://sourceforge/tcl/tk${tcl.version}-src.tar.gz"; + sha256 = "0an3wqkjzlyyq6l9l3nawz76axsrsppbyylx0zk9lkv7llrala03"; + }; + +}) + diff --git a/pkgs/development/libraries/tk/8.6.nix b/pkgs/development/libraries/tk/8.6.nix new file mode 100644 index 000000000000..110151227bdd --- /dev/null +++ b/pkgs/development/libraries/tk/8.6.nix @@ -0,0 +1,13 @@ +{ callPackage, fetchurl, tcl, ... } @ args: + +callPackage ./generic.nix (args // rec { + + src = fetchurl { + url = "mirror://sourceforge/tcl/tk${tcl.version}-src.tar.gz"; + sha256 = "1h96vp15zl5xz0d4qp6wjyrchqmrmdm3q5k22wkw9jaxbvw9vy88"; + }; + + patches = [ ./different-prefix-with-tcl.patch ]; + +}) + diff --git a/pkgs/development/libraries/tk/default.nix b/pkgs/development/libraries/tk/generic.nix index a847f848a02a..c3bab0b2f868 100644 --- a/pkgs/development/libraries/tk/default.nix +++ b/pkgs/development/libraries/tk/generic.nix @@ -1,14 +1,9 @@ -{ stdenv, fetchurl, pkgconfig, tcl, libXft, fontconfig }: +{ stdenv, src, pkgconfig, tcl, libXft, fontconfig, patches ? [], ... }: stdenv.mkDerivation { name = "tk-${tcl.version}"; - src = fetchurl { - url = "mirror://sourceforge/tcl/tk${tcl.version}-src.tar.gz"; - sha256 = "1h96vp15zl5xz0d4qp6wjyrchqmrmdm3q5k22wkw9jaxbvw9vy88"; - }; - - patches = [ ./different-prefix-with-tcl.patch ]; + inherit src patches; postInstall = '' ln -s $out/bin/wish* $out/bin/wish diff --git a/pkgs/development/libraries/unibilium/default.nix b/pkgs/development/libraries/unibilium/default.nix index 663432f8ec86..369e271191f1 100644 --- a/pkgs/development/libraries/unibilium/default.nix +++ b/pkgs/development/libraries/unibilium/default.nix @@ -12,7 +12,8 @@ stdenv.mkDerivation rec { sha256 = "143j7qrqjxxmdf3yzhn6av2qwiyjjk4cnskkgz6ir2scjfd5gvja"; }; - makeFlags = [ "PREFIX=$(out)" ]; + makeFlags = [ "PREFIX=$(out)" ] + ++ stdenv.lib.optional stdenv.isDarwin "LIBTOOL=${libtool}/bin/libtool"; buildInputs = [ libtool pkgconfig ]; diff --git a/pkgs/development/libraries/utf8proc/default.nix b/pkgs/development/libraries/utf8proc/default.nix index 63de08b46dd7..c8a2fd6a4e99 100644 --- a/pkgs/development/libraries/utf8proc/default.nix +++ b/pkgs/development/libraries/utf8proc/default.nix @@ -11,9 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1ryjlcnpfm7fpkq6444ybi576hbnh2l0w7kjhbqady5lxwjyg3pf"; }; - installPhase = '' - make install prefix=$out - ''; + makeFlags = [ "prefix=$(out)" ]; meta = with stdenv.lib; { description = "A clean C library for processing UTF-8 Unicode data"; diff --git a/pkgs/development/libraries/wavpack/default.nix b/pkgs/development/libraries/wavpack/default.nix index 08465861f27f..b205519eea17 100644 --- a/pkgs/development/libraries/wavpack/default.nix +++ b/pkgs/development/libraries/wavpack/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { name = "wavpack-${version}"; - version = "4.70.0"; + version = "4.75.0"; enableParallelBuilding = true; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://www.wavpack.com/${name}.tar.bz2"; - sha256 = "191h8hv8qk72hfh1crg429i9yq3cminwqb249sy9zadbn1wy7b9c"; + sha256 = "0bmgwcvch3cjcivk7pyasqysj0s81wkg40j3zfrcd7bl0qhmqgn6"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/wiredtiger/default.nix b/pkgs/development/libraries/wiredtiger/default.nix index da4dc9d6bbc3..5fe75248e353 100644 --- a/pkgs/development/libraries/wiredtiger/default.nix +++ b/pkgs/development/libraries/wiredtiger/default.nix @@ -26,13 +26,13 @@ let in stdenv.mkDerivation rec { name = "wiredtiger-${version}"; - version = "2.6.0"; + version = "2.6.1"; src = fetchFromGitHub { repo = "wiredtiger"; owner = "wiredtiger"; rev = version; - sha256 = "0i2r03bpq9xzp5pw7c67kjac5j7mssiawd9id8lqjdbr6c6772cv"; + sha256 = "1nj319w3hvkq3za2dz9m0p1w683gycdb392v1jb910bhzpsq30pd"; }; nativeBuildInputs = [ automake autoconf libtool ]; diff --git a/pkgs/development/libraries/wxmac/default.nix b/pkgs/development/libraries/wxmac/default.nix new file mode 100644 index 000000000000..9734fd358ea2 --- /dev/null +++ b/pkgs/development/libraries/wxmac/default.nix @@ -0,0 +1,55 @@ +{ stdenv, fetchurl, setfile, rez, derez, + expat, libiconv, libjpeg, libpng, libtiff, zlib +}: + +with stdenv.lib; + +stdenv.mkDerivation rec { + version = "3.0.2"; + name = "wxmac-${version}"; + + src = fetchurl { + url = "mirror://sourceforge/wxwindows/wxWidgets-${version}.tar.bz2"; + sha256 = "346879dc554f3ab8d6da2704f651ecb504a22e9d31c17ef5449b129ed711585d"; + }; + + patches = [ ./wx.patch ]; + + buildInputs = [ setfile rez derez expat libiconv libjpeg libpng libtiff zlib ]; + + configureFlags = [ + "--enable-unicode" + "--with-osx_cocoa" + "--enable-std_string" + "--enable-display" + "--with-opengl" + "--with-libjpeg" + "--with-libtiff" + "--without-liblzma" + "--with-libpng" + "--with-zlib" + "--enable-dnd" + "--enable-clipboard" + "--enable-webkit" + "--enable-svg" + "--enable-graphics_ctx" + "--enable-controls" + "--enable-dataviewctrl" + "--with-expat" + "--disable-precomp-headers" + "--disable-mediactrl" + ]; + + checkPhase = '' + ./wx-config --libs + ''; + + doCheck = true; + + enableParallelBuilding = true; + + meta = { + platforms = platforms.darwin; + maintainers = [ maintainers.lnl7 ]; + }; +} diff --git a/pkgs/development/libraries/wxmac/wx.patch b/pkgs/development/libraries/wxmac/wx.patch new file mode 100644 index 000000000000..622e22d1fdb4 --- /dev/null +++ b/pkgs/development/libraries/wxmac/wx.patch @@ -0,0 +1,59 @@ +diff --git a/include/wx/defs.h b/include/wx/defs.h +index 397ddd7..d128083 100644 +--- a/include/wx/defs.h ++++ b/include/wx/defs.h +@@ -3169,12 +3169,20 @@ DECLARE_WXCOCOA_OBJC_CLASS(UIImage); + DECLARE_WXCOCOA_OBJC_CLASS(UIEvent); + DECLARE_WXCOCOA_OBJC_CLASS(NSSet); + DECLARE_WXCOCOA_OBJC_CLASS(EAGLContext); ++DECLARE_WXCOCOA_OBJC_CLASS(UIWebView); + + typedef WX_UIWindow WXWindow; + typedef WX_UIView WXWidget; + typedef WX_EAGLContext WXGLContext; + typedef WX_NSString* WXGLPixelFormat; + ++typedef WX_UIWebView OSXWebViewPtr; ++ ++#endif ++ ++#if wxOSX_USE_COCOA_OR_CARBON ++DECLARE_WXCOCOA_OBJC_CLASS(WebView); ++typedef WX_WebView OSXWebViewPtr; + #endif + + #endif /* __WXMAC__ */ +diff --git a/include/wx/html/webkit.h b/include/wx/html/webkit.h +index 8700367..f805099 100644 +--- a/include/wx/html/webkit.h ++++ b/include/wx/html/webkit.h +@@ -18,7 +18,6 @@ + #endif + + #include "wx/control.h" +-DECLARE_WXCOCOA_OBJC_CLASS(WebView); + + // ---------------------------------------------------------------------------- + // Web Kit Control +@@ -107,7 +106,7 @@ private: + wxString m_currentURL; + wxString m_pageTitle; + +- WX_WebView m_webView; ++ OSXWebViewPtr m_webView; + + // we may use this later to setup our own mouse events, + // so leave it in for now. +diff --git a/include/wx/osx/webview_webkit.h b/include/wx/osx/webview_webkit.h +index 803f8b0..438e532 100644 +--- a/include/wx/osx/webview_webkit.h ++++ b/include/wx/osx/webview_webkit.h +@@ -158,7 +158,7 @@ private: + wxWindowID m_windowID; + wxString m_pageTitle; + +- wxObjCID m_webView; ++ OSXWebViewPtr m_webView; + + // we may use this later to setup our own mouse events, + // so leave it in for now. diff --git a/pkgs/development/libraries/zeromq/4.x.nix b/pkgs/development/libraries/zeromq/4.x.nix index 744703adb24d..5cf9098bec66 100644 --- a/pkgs/development/libraries/zeromq/4.x.nix +++ b/pkgs/development/libraries/zeromq/4.x.nix @@ -1,14 +1,14 @@ -{ stdenv, fetchurl, libuuid }: +{ stdenv, fetchurl, libuuid, pkgconfig, libsodium }: stdenv.mkDerivation rec { - name = "zeromq-4.0.6"; + name = "zeromq-4.1.2"; src = fetchurl { url = "http://download.zeromq.org/${name}.tar.gz"; - sha256 = "0arl8fy8d03xd5h0mgda1s5bajwg8iyh1kk4hd1420rpcxgkrj91"; + sha256 = "09sr6ix4k25m3fw6c8xhicq5g27q0k1vlwfqai8iwlk8dnnjw5pr"; }; - buildInputs = [ libuuid ]; + buildInputs = [ libuuid pkgconfig libsodium ]; meta = with stdenv.lib; { branch = "4"; diff --git a/pkgs/development/ocaml-modules/herelib/default.nix b/pkgs/development/ocaml-modules/herelib/default.nix index fd955602844e..716e31b2bfe2 100644 --- a/pkgs/development/ocaml-modules/herelib/default.nix +++ b/pkgs/development/ocaml-modules/herelib/default.nix @@ -4,7 +4,7 @@ buildOcaml rec { version = "109.35.02"; name = "herelib"; - minimumSupportedOcamlVersion = "4.02"; + minimumSupportedOcamlVersion = "4.00"; src = fetchurl { url = "https://github.com/janestreet/herelib/archive/${version}.tar.gz"; diff --git a/pkgs/development/ocaml-modules/menhir/default.nix b/pkgs/development/ocaml-modules/menhir/default.nix index 0a73f8aa04a7..5cf2f97e4b74 100644 --- a/pkgs/development/ocaml-modules/menhir/default.nix +++ b/pkgs/development/ocaml-modules/menhir/default.nix @@ -5,11 +5,11 @@ let in stdenv.mkDerivation { - name = "menhir-20130116"; + name = "menhir-20140422"; src = fetchurl { - url = http://pauillac.inria.fr/~fpottier/menhir/menhir-20130116.tar.gz; - sha256 = "65cd9e4f813c62697c60c344963ca11bd461169f574ba3a866c2691541cb4682"; + url = http://pauillac.inria.fr/~fpottier/menhir/menhir-20140422.tar.gz; + sha256 = "1ki1f2id6a14h9xpv2k8yb6px7dyw8cvwh39csyzj4qpzx7wia0d"; }; buildInputs = [ocaml findlib]; diff --git a/pkgs/development/pharo/vm/default.nix b/pkgs/development/pharo/vm/default.nix index b8a09492eab7..8fa1bc126465 100644 --- a/pkgs/development/pharo/vm/default.nix +++ b/pkgs/development/pharo/vm/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { - version = "2014.11.29-2"; + version = "2015.04.30"; name = "pharo-vm-core-i386-${version}"; system = "x86_32-linux"; src = fetchurl { url = "http://files.pharo.org/vm/src/vm-unix-sources/blessed/pharo-vm-${version}.tar.bz2"; - md5 = "529cff4639cee313ddf55fd377bd6fb3"; + sha256 = "0lg9ahqfrwbn3srxbbvr1vhjnx267chbs1la0nrc2ivpd55iwjgv"; }; sources10Zip = fetchurl { diff --git a/pkgs/development/python-modules/numpy-scipy-support.nix b/pkgs/development/python-modules/numpy-scipy-support.nix index 22be22633c20..915b27cb4cd3 100644 --- a/pkgs/development/python-modules/numpy-scipy-support.nix +++ b/pkgs/development/python-modules/numpy-scipy-support.nix @@ -3,14 +3,14 @@ python, # Name of package (e.g. numpy or scipy) pkgName, - # Atlas math library - atlas + # OpenBLAS math library + openblas }: { - # Re-export atlas here so that it can be sure that the same one will be used + # Re-export openblas here so that it can be sure that the same one will be used # in the propagatedBuildInputs. - inherit atlas; + inherit openblas; # First "install" the package, then import what was installed, and call the # .test() function, which will run the test suite. @@ -48,9 +48,9 @@ preBuild = '' echo "Creating site.cfg file..." cat << EOF > site.cfg - [atlas] - include_dirs = ${atlas}/include - library_dirs = ${atlas}/lib + [openblas] + include_dirs = ${openblas}/include + library_dirs = ${openblas}/lib EOF ''; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix new file mode 100644 index 000000000000..015d6d5537ce --- /dev/null +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -0,0 +1,1043 @@ +# This file is generated from generate-r-packages.R. DO NOT EDIT. +# Execute the following command to update the file. +# +# Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix + +{ self, derive }: with self; { +ABSSeq = derive { name="ABSSeq"; version="1.5.0"; sha256="1glzkjq7ih4vqwfcvl7rc8dmlb5a3pl5f6x21df6fljdxiff23vk"; depends=[Rcpp]; }; +ABarray = derive { name="ABarray"; version="1.37.0"; sha256="06pvn3nbi0gnj6inwyy1hy6r0m6axm4aqw36966va02vby4937ln"; depends=[Biobase multtest]; }; +ACME = derive { name="ACME"; version="2.25.0"; sha256="1kni4wvp7dw1yy813dyq2329a0v8wgskq0wr2yvkpjiagg5j36km"; depends=[Biobase BiocGenerics]; }; +ADaCGH2 = derive { name="ADaCGH2"; version="2.9.3"; sha256="0rs0ih1zjrmqm56hh9vdz737c9g009x70q4h7g9d612xb38cbfhv"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; +AGDEX = derive { name="AGDEX"; version="1.17.0"; sha256="16lgq2ycyql4ky2i8x3cd7w77gr946bcb9pp70gb9m1arhjcz41j"; depends=[Biobase GSEABase]; }; +AIMS = derive { name="AIMS"; version="1.1.0"; sha256="1k4004b5a5db0rr6dbbbqv1llq1p815b5m5a0q7pqc9vgv0yvv9b"; depends=[Biobase e1071]; }; +ALDEx2 = derive { name="ALDEx2"; version="1.1.1"; sha256="01fk2kkrkz2vv7339a82sn1lk3h3c0amkm0n1651am3jdal7bqzs"; depends=[GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; +ARRmNormalization = derive { name="ARRmNormalization"; version="1.9.0"; sha256="1kiqi93ivdgqz0m8msi084kbzjx75sb143mb5q27qc9cmc91l6x2"; depends=[]; }; +ASEB = derive { name="ASEB"; version="1.13.0"; sha256="1706mpsszwbii70r01vf641lvcaaj1ng2z7kwmnbi0idjab4qqbv"; depends=[]; }; +ASGSCA = derive { name="ASGSCA"; version="1.3.0"; sha256="0pfbg7wgm20jy6kkjgv7ix91bkry6xhlm537fs9ww5l6p9q4ia0c"; depends=[MASS Matrix]; }; +ASSET = derive { name="ASSET"; version="1.7.0"; sha256="1a3kgllz4nb7n28ip25qdwbawwzbm0l0mfyqlx98zm0ln9crv6mm"; depends=[MASS msm rmeta]; }; +ASSIGN = derive { name="ASSIGN"; version="1.5.0"; sha256="0jkp9v3yn6y6izyma86nxkk4nrlh9dkgxd842k4wr1fha06ix807"; depends=[gplots msm Rlab]; }; +AffyCompatible = derive { name="AffyCompatible"; version="1.29.1"; sha256="1ldqlm7i5fklv1ih0ghpwh1ark2ccdqnrwdxrn4np5c4pv3zckgl"; depends=[Biostrings RCurl XML]; }; +AffyExpress = derive { name="AffyExpress"; version="1.35.0"; sha256="1ysn3c8mpnq3rcir3vqcv0yb0sd41qwm2nmh1j8jx5iq254s5l5z"; depends=[affy limma]; }; +AffyRNADegradation = derive { name="AffyRNADegradation"; version="1.15.0"; sha256="0x7mwlzvcxplvijprch0anwbfmj1qkrxqd9rc6f4p0zf88z2csal"; depends=[affy]; }; +AffyTiling = derive { name="AffyTiling"; version="1.27.0"; sha256="1jqil9hd10cwsqdlxjd7c8s0p9fvrfcqxiw8rfrq117c8dlgl7w6"; depends=[affxparser affy preprocessCore]; }; +AgiMicroRna = derive { name="AgiMicroRna"; version="2.19.0"; sha256="1m1fi6pdqwnfn21a4i7psxdg12bn6bhvcsi43bhwlzxzkrz00257"; depends=[affy affycoretools Biobase limma preprocessCore]; }; +AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.13"; sha256="195pad565yczbxili0zg6329dxnwaj70vhxz3lizm3pbidlv56jn"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; +AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.1"; sha256="0qbnwxwc205623fmzvhwrhr2jii2bgrd0mcdwi4811pab0dmzf49"; depends=[Biobase graph log4r rjson]; }; +AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.16"; sha256="0dxgcdvbq8vi97i6r64x5s4gngynk2hqdjmhfnbk648sq8h2rbrf"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; +AnnotationForge = derive { name="AnnotationForge"; version="1.11.3"; sha256="1a3fhinjmrxl400p6w452ar31h40lwd8vlf8snsqqk21vs5mmnla"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; }; +AnnotationFuncs = derive { name="AnnotationFuncs"; version="1.19.0"; sha256="1qjvkbqpyhwibdqv1c4n2z5wjnzx0h3kdas3fs33jhb597bxhl1y"; depends=[AnnotationDbi]; }; +AnnotationHub = derive { name="AnnotationHub"; version="2.1.26"; sha256="0py74da9j3j0h0pvf1kvfzf3cixn52x9l5ac7igans4cm5pizr0k"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; }; +ArrayExpress = derive { name="ArrayExpress"; version="1.29.1"; sha256="0gyckxsmmh81ykf7mj952h2a4z58xrf9lbnmv884hz7zj317lf83"; depends=[affy Biobase limma XML]; }; +ArrayExpressHTS = derive { name="ArrayExpressHTS"; version="1.19.0"; sha256="0qyd9jhkvw4lxqjvix28yzdx08hi7vf77ynlqxcl2q1lb3gmbxar"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; +ArrayTV = derive { name="ArrayTV"; version="1.7.0"; sha256="11dlq4lmzw0x8z2qrxff6xlcilp95nd71jpdvg3i5yni3ws6z5m1"; depends=[DNAcopy foreach oligoClasses]; }; +ArrayTools = derive { name="ArrayTools"; version="1.29.0"; sha256="1n7ism9ga87mbcbjc155md76gvnzli1vlakzx5ax6hnxcdjzp9n4"; depends=[affy Biobase limma xtable]; }; +AtlasRDF = derive { name="AtlasRDF"; version="1.5.0"; sha256="12l629rpkwdmvxjy5kb3d9f72mhcn22nlp7kwgfw79syqilb9wz6"; depends=[hash SPARQL]; }; +BAC = derive { name="BAC"; version="1.29.0"; sha256="0xhhpxv8z9f0q4hb1l327x4vzm3jyk1xx9dbbpnhlyjfj9hzzn38"; depends=[]; }; +BADER = derive { name="BADER"; version="1.7.0"; sha256="0v1p0s77pi2vxjpsn578741gyr2mgvkppfcaf75qkhs9b6g2m3ps"; depends=[]; }; +BAGS = derive { name="BAGS"; version="2.9.0"; sha256="0hhgi874kq98nclmlsqkng0g9gs2jy9qkwl6vmgb7p37h61pmjli"; depends=[Biobase]; }; +BCRANK = derive { name="BCRANK"; version="1.31.0"; sha256="12w7yk5911ll3nrksxv861z4lzymakk4yfsqm5j0y6wf1mwd7wyc"; depends=[Biostrings]; }; +BEAT = derive { name="BEAT"; version="1.7.0"; sha256="0s4mkp09n913dw2s5d7hms7rbcqzi1rsk8dmc5fdc3wlp7hw277w"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; +BEclear = derive { name="BEclear"; version="1.1.0"; sha256="1icaxkxwr2rkii4ffflna51jxz4f1ijszrxj1ndz6r4gbrzdy374"; depends=[Matrix snowfall]; }; +BGmix = derive { name="BGmix"; version="1.29.0"; sha256="0s2s6ylbw2wvdkn28842ghsflhcmcn156zw3fxmbdnz7xs29qs1f"; depends=[KernSmooth]; }; +BHC = derive { name="BHC"; version="1.21.0"; sha256="0f8qqid4qxw52zjvvm024wcmn0afr7avkr4hr2jfyvs0ga49khx8"; depends=[]; }; +BRAIN = derive { name="BRAIN"; version="1.15.0"; sha256="09yd3xf3h85wdf56p38mnspyqbswl2v8zb81yg0a008p0l5ax8xr"; depends=[Biostrings lattice PolynomF]; }; +BSgenome = derive { name="BSgenome"; version="1.37.1"; sha256="0nmj1wdp1xlkf603sw1h0k3x0jywj3ykaws8sdb4hizb52pgzw8z"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; +BUS = derive { name="BUS"; version="1.25.0"; sha256="1n3s0pw4ijgh927mahwqybks8i6ysybp7xn4a86nrbpr2kqhznrd"; depends=[infotheo minet]; }; +BaseSpaceR = derive { name="BaseSpaceR"; version="1.13.1"; sha256="0w7hdzncjds0dji03ldgk4zyrpr3qal2lzdlhlbc8809fjlp3jb9"; depends=[RCurl RJSONIO]; }; +Basic4Cseq = derive { name="Basic4Cseq"; version="1.5.1"; sha256="0a4b11rv5ilv84qqpvf320c3knaajg4hlby5km0zzms3vbisr4hi"; depends=[Biostrings caTools GenomicAlignments GenomicRanges RCircos]; }; +BayesPeak = derive { name="BayesPeak"; version="1.21.0"; sha256="0mz00mk6gmc5g79iifn5hzfwf7s568n6s6wy46vrnnnnr3sk9w49"; depends=[IRanges]; }; +BeadDataPackR = derive { name="BeadDataPackR"; version="1.21.0"; sha256="1h9zq2zjwslgwzz5zghjkszhy9d6bcrpssk6x15a9i0wb6nkrdxm"; depends=[]; }; +BiGGR = derive { name="BiGGR"; version="1.5.0"; sha256="1q9m870pyhxd1627n94c259094k8jyrg22ni26qpnxkapj18lr0b"; depends=[hyperdraw hypergraph LIM rsbml stringr]; }; +BiRewire = derive { name="BiRewire"; version="2.1.0"; sha256="1rf3j0rfbzyd17ashj99fjahilz4pgil7ch6iyfzipb6894faxwi"; depends=[igraph slam]; }; +BiSeq = derive { name="BiSeq"; version="1.9.1"; sha256="0s8mhynjprg4bpn9p88rzpm6na9581bzmyv4wljsdqlz0wcb87az"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; +BicARE = derive { name="BicARE"; version="1.27.0"; sha256="19hslc78nijcs6gyxzzcd8856wa1gf5dsrvm4x6r9lprfrk7d7fb"; depends=[Biobase GSEABase multtest]; }; +BioMVCClass = derive { name="BioMVCClass"; version="1.37.0"; sha256="1k4ba98cjaqhy33vsmflnwasi0vxr30dvj6861pz625m87fyp2g6"; depends=[Biobase graph MVCClass Rgraphviz]; }; +BioNet = derive { name="BioNet"; version="1.29.0"; sha256="0q86sfv29y8haq8zhxc93p7zl1nh8aq0yj31hvw8xx6g75xlapaz"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; +BioSeqClass = derive { name="BioSeqClass"; version="1.27.0"; sha256="1pv7zibcrgbh7xlf2j04jc0m2ddlx8wa198ikvwi85qm09hrvmmk"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; +Biobase = derive { name="Biobase"; version="2.29.1"; sha256="12cckssh7x4dd8vaapp5nfc5bfcqls8k3rblcfi17z5cpi0jply6"; depends=[BiocGenerics]; }; +BiocCaseStudies = derive { name="BiocCaseStudies"; version="1.31.0"; sha256="05nj9i9y8clf406bjcflj8lsrp9x9iw6my1bdqnxg3nv2krp37xn"; depends=[Biobase]; }; +BiocCheck = derive { name="BiocCheck"; version="1.5.6"; sha256="0gpmrqvj31n73bqljf23wbsw3hp44hl3z1jhc2q86s3mw6hlcfip"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; }; +BiocGenerics = derive { name="BiocGenerics"; version="0.15.2"; sha256="16r4jq5yq3xg8s212dngrf6a63ggb87654cf45f4386c56gcczgg"; depends=[]; }; +BiocInstaller = derive { name="BiocInstaller"; version="1.19.6"; sha256="09f3ybmaklac71ixd4imfig7861qc339kpqhjybq97a3yw8zcksa"; depends=[]; }; +BiocParallel = derive { name="BiocParallel"; version="1.3.26"; sha256="1dy3i5ypjxnz57yw2pyfm7778fdficbp6abbsrq79rgr1dvfbqyr"; depends=[futile_logger snow]; }; +BiocStyle = derive { name="BiocStyle"; version="1.7.4"; sha256="0wlydy1a3pspnyjg5vl0657z620n5vlhx99hxisskbrsr026mhmg"; depends=[]; }; +Biostrings = derive { name="Biostrings"; version="2.37.2"; sha256="0j6701qgrnphsy9p34sf3s6d91j1zbd824zwv9rsfdmdffbkqq3b"; depends=[BiocGenerics IRanges S4Vectors XVector zlibbioc]; }; +BitSeq = derive { name="BitSeq"; version="1.13.0"; sha256="1d397bcdyi3d35l1q1661spm3xhr7hqlsrjr5a2ybsjs3wqkf4fj"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; +BrainStars = derive { name="BrainStars"; version="1.13.0"; sha256="07wygi0fw0ilg404gx1ifswr61w6qlg8j0vkmnsr0migm70rgzzg"; depends=[Biobase RCurl RJSONIO]; }; +BridgeDbR = derive { name="BridgeDbR"; version="1.3.0"; sha256="1z72dd7vvbsz6nc4asfc9qim6svxhmfbpi8f876d45kds2dfgyd5"; depends=[RCurl rJava]; }; +BrowserViz = derive { name="BrowserViz"; version="1.1.4"; sha256="1ilzf8k0bqrwidk01b7yyc0mhrif02j5a6aqi70mvxfy1dfj5yj0"; depends=[BiocGenerics httpuv jsonlite Rcpp]; }; +BrowserVizDemo = derive { name="BrowserVizDemo"; version="1.1.0"; sha256="1q04fsl3nxwlmzwxn27bgd66pcjy8sywsmpdny6206kl6rs2a9yk"; depends=[BiocGenerics BrowserViz httpuv jsonlite Rcpp]; }; +BubbleTree = derive { name="BubbleTree"; version="1.1.0"; sha256="1vyv0klid43jwcjkrsm6fmgqaigb1f76i0q3yc38qm5q8z55vx8n"; depends=[dplyr GenomicRanges geosphere IRanges mixdist plyr shape]; }; +BufferedMatrix = derive { name="BufferedMatrix"; version="1.33.0"; sha256="0db35771j5hnifn9avs2m1zazr07pga4ybr0vq5q5a1krg73kqn0"; depends=[]; }; +BufferedMatrixMethods = derive { name="BufferedMatrixMethods"; version="1.33.0"; sha256="14x330kwv4fj1l974xr0djy6xvmi6z8z7wc3ri3d824rxc6glcld"; depends=[BufferedMatrix]; }; +CAFE = derive { name="CAFE"; version="1.5.0"; sha256="1kzy0g0kwvzvlls316cpvwrvnv5m9vklzjjsiiykvfq1wd21s96f"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; +CAGEr = derive { name="CAGEr"; version="1.11.0"; sha256="1rz1r55aji1av70c661d7czwipxah9507h5i9hcngy84ic1m72f1"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; }; +CALIB = derive { name="CALIB"; version="1.35.0"; sha256="08fgzq80ws4i6i1ppbqxdq3ba9qfdv4h0dyi08f9k91kfh1y31x4"; depends=[limma]; }; +CAMERA = derive { name="CAMERA"; version="1.25.0"; sha256="1nl5va3f436vwpcirhcpcph13s2vbh8965v8iizi29vk83gbyfza"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; +CAnD = derive { name="CAnD"; version="1.1.1"; sha256="1zyp4z86fda83wdhjfdh1ck9ynvdvrrxcvdlgld7h4x295r35r3s"; depends=[ggplot2 reshape]; }; +CFAssay = derive { name="CFAssay"; version="1.3.0"; sha256="04zgyvm0rrs780z1vn4zzrh3w01lnhaywyn5ar6dvxcyxnr2y3qs"; depends=[]; }; +CGEN = derive { name="CGEN"; version="3.3.0"; sha256="03sdyw6z5xw9ndwkwdli7bz6v0ki8w2slx30v5lgm31lqgl4lpf6"; depends=[mvtnorm survival]; }; +CGHbase = derive { name="CGHbase"; version="1.29.0"; sha256="1a9j82jgppbajl6zkkymjdq61lgyrv8aavr2lzi88ipafmqajnvd"; depends=[Biobase marray]; }; +CGHcall = derive { name="CGHcall"; version="2.31.0"; sha256="0f03gx73sfn8x1rnynviyg12fs1j4wfz7adh4n1lrvph89y4lkhv"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; +CGHnormaliter = derive { name="CGHnormaliter"; version="1.23.0"; sha256="1rd7lbzmqch6lkbn36ymmp3hnnllqbgwb0rasziqk9ys6633fzv6"; depends=[Biobase CGHbase CGHcall]; }; +CGHregions = derive { name="CGHregions"; version="1.27.0"; sha256="0ah7cxaq1qvgwxvgp8jzkwyzdqa4yji7ylhdq2whysvc73aciikg"; depends=[Biobase CGHbase]; }; +CMA = derive { name="CMA"; version="1.27.0"; sha256="10bbmlyd8370dr1azrsljlslail5i9pwy8m524laqq85196lf6lv"; depends=[Biobase]; }; +CNAnorm = derive { name="CNAnorm"; version="1.15.0"; sha256="13wraamvj1vr5iiwknz5g1jq8zmq3gqzcsphn156rmxivpkxmk8l"; depends=[DNAcopy]; }; +CNEr = derive { name="CNEr"; version="1.5.3"; sha256="101cf9hpz3ak04xf9i9b6wbmmdjfgawfvxsb4zflv6avjdqnsqbm"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; }; +CNORdt = derive { name="CNORdt"; version="1.11.0"; sha256="1c01ra85j04wdwaqzvc3qvva9sf878qcy4xaz8kxd6b49ringcia"; depends=[abind CellNOptR]; }; +CNORfeeder = derive { name="CNORfeeder"; version="1.9.0"; sha256="1d2lskj5vlg0ry3gkm61i1cahf6m9vg2599qj6v8z7w9wmp37cb7"; depends=[CellNOptR graph]; }; +CNORfuzzy = derive { name="CNORfuzzy"; version="1.11.0"; sha256="0kzlad2mkfvqxv4lv8hcc10cspcg31yp49r6pdn2vakif5gbpnz3"; depends=[CellNOptR nloptr]; }; +CNORode = derive { name="CNORode"; version="1.11.0"; sha256="0cmv9s23pcd48fpzg92i5h2g10z49n091f2lnarldsay3sj8wlcy"; depends=[CellNOptR genalg]; }; +CNTools = derive { name="CNTools"; version="1.25.0"; sha256="05k939z92mmqajirl4w872qnh59093dpxk6da5bcmrr43h65dn95"; depends=[genefilter]; }; +CNVrd2 = derive { name="CNVrd2"; version="1.7.0"; sha256="18970q33dw51b7jas26dl2cr2ghwjxrllgmqykq0f50b55sv01p7"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; +CNVtools = derive { name="CNVtools"; version="1.63.0"; sha256="005xw4rbp4zdg78jhrq5l4201kq5889py0jh49kfjpk000nvvmj9"; depends=[survival]; }; +CODEX = derive { name="CODEX"; version="1.1.0"; sha256="0k3ncnngblbx8hhv5p31dac4s9asjc8hddn4b0z20zkqncpgs16s"; depends=[GenomeInfoDb Rsamtools]; }; +COHCAP = derive { name="COHCAP"; version="1.7.0"; sha256="0clr1jh4jnq54phsnl90zfqy1rqy9zpzffyqpziahpfifsaq0kl2"; depends=[WriteXLS]; }; +COMPASS = derive { name="COMPASS"; version="1.7.2"; sha256="0c83fsrmi7d2888pa3lnln42mlbnjgvpxw337vdh3dar1185a5b0"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; }; +CORREP = derive { name="CORREP"; version="1.35.0"; sha256="0hlij2ch8r3lv130hvyshb82lfqz2c7kr56bka1ghmg6jp0xf1n6"; depends=[e1071]; }; +COSNet = derive { name="COSNet"; version="1.3.3"; sha256="0l9sn0cki0mxacxv0bwp3cczcl8rscx8g3lnr0r448f13j8198f4"; depends=[]; }; +CRISPRseek = derive { name="CRISPRseek"; version="1.9.1"; sha256="1wrjvnr8i50b9r4h8m84whs5nhqxi1w91c622kid7adwmhzq3ri2"; depends=[BiocGenerics Biostrings BSgenome seqinr]; }; +CRImage = derive { name="CRImage"; version="1.17.0"; sha256="1sab95gngwi7c333n9hnbd9fdvdy9i69pjpx5ic5799s7qr03llw"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; +CSAR = derive { name="CSAR"; version="1.21.0"; sha256="1wn7zxmy5ssj2jkk2624j42yv67wdcigp5ksb6fc2kzpgnvqmxl1"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; +CSSP = derive { name="CSSP"; version="1.7.0"; sha256="1ydxj358sfaygzjvh0b042p7gymjyl7nr5cnxrh8c7x2mv2hdh4d"; depends=[]; }; +CancerMutationAnalysis = derive { name="CancerMutationAnalysis"; version="1.13.0"; sha256="0c3yjscd1jlgfl869vnv37qdb0y5gicnja1why9ws95qqgmij6zl"; depends=[AnnotationDbi limma qvalue]; }; +Cardinal = derive { name="Cardinal"; version="1.1.0"; sha256="0n87rzcfvy5km17n2bk2k85szlwlw7h8g1yqasvpk73sxmjlfc0a"; depends=[Biobase BiocGenerics fields irlba lattice ProtGenerics signal sp]; }; +Category = derive { name="Category"; version="2.35.1"; sha256="12y0mgr7lsdb4hhb95qgylxfbdjiqwv1gs9iknvgnyj37gdpxajz"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter graph GSEABase Matrix RBGL]; }; +CausalR = derive { name="CausalR"; version="0.99.12"; sha256="038raljgrdwsp8dzc5qbzbwr8j8n7dlwmx0jx8liq153l3nwp01p"; depends=[igraph]; }; +CellNOptR = derive { name="CellNOptR"; version="1.15.0"; sha256="14x68i7wss44hmfihyqkw340lc0dpsccqsn1l2a0zs0gfkwgw3a5"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; +CexoR = derive { name="CexoR"; version="1.7.2"; sha256="1rhz97c8avmx9g3zf4vdzqb56v98dlh9xw74nywqvznn7wbq8rvp"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; +ChAMP = derive { name="ChAMP"; version="1.7.0"; sha256="0ll50qyq9k8x4bv30dap6g6lpavh7diwxllm501jgg39kp956d08"; depends=[DNAcopy GenomicRanges impute IRanges limma marray minfi plyr preprocessCore RPMM sva wateRmelon]; }; +ChIPQC = derive { name="ChIPQC"; version="1.5.1"; sha256="0nvpq2m267nf3aiv7xvw1fkwnr53qqzhs2nmyhjiqdw9ckias134"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; }; +ChIPXpress = derive { name="ChIPXpress"; version="1.11.0"; sha256="11aifr69ss1hakrhba985bwz6k1sqkpzvv7gnzn8cgqnzxyr2i6b"; depends=[affy biganalytics bigmemory Biobase frma GEOquery]; }; +ChIPpeakAnno = derive { name="ChIPpeakAnno"; version="3.3.2"; sha256="0ww3ddnvdc561lhz27h8n3ywi1xpx1cbsqk2i8m5rkpykkkkr2dh"; depends=[AnnotationDbi BiocGenerics BiocInstaller biomaRt Biostrings BSgenome GenomicFeatures GenomicRanges graph IRanges limma multtest RBGL VennDiagram]; }; +ChIPseeker = derive { name="ChIPseeker"; version="1.5.4"; sha256="10h2gbc1irzlkv9b12k9z54csaav6qpvjvjbgqzh7dcm03l14fah"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors]; }; +ChIPseqR = derive { name="ChIPseqR"; version="1.23.1"; sha256="0di3vh865m84cvl9mkwiqmz8jz5y54q4ayc0fbzjkwh790qxb48j"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; +ChIPsim = derive { name="ChIPsim"; version="1.23.1"; sha256="13kniwvwa49n1kc9114ljn1fmzaiyb2nh33if596llql60p7nd23"; depends=[Biostrings IRanges ShortRead XVector]; }; +ChemmineOB = derive { name="ChemmineOB"; version="1.7.1"; sha256="04agfsdzccsvvvis6vy1gg83gfs4nrph950v6bbzgk15ki32rsjz"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; +ChemmineR = derive { name="ChemmineR"; version="2.21.7"; sha256="01riyjdjxnw1fybps1g5sbbcv1yn3mn222wg3w825m7lcb1hg13z"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; }; +ChromHeatMap = derive { name="ChromHeatMap"; version="1.23.0"; sha256="1z0w201lbhsapx4p0gn9x65zxjbzh8g51jjfcvy61xrqbbyshwv1"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; }; +ClassifyR = derive { name="ClassifyR"; version="1.3.0"; sha256="0jn7pd3mh6m6cqg5dldn8vmi3ffjhv1hn3gvvy6bl1g80a0xf5mb"; depends=[Biobase BiocParallel locfit ROCR]; }; +Clomial = derive { name="Clomial"; version="1.5.0"; sha256="1kxc0bgfrfj0bbx696513mn8n6vficdsd3ag5pqs5xz2bb7vx4qn"; depends=[matrixStats permute]; }; +Clonality = derive { name="Clonality"; version="1.17.0"; sha256="1irb13wi5lq28nni0b89fy06vvjwpzigfdwfmzjscrmhzdysrfa6"; depends=[DNAcopy]; }; +CoCiteStats = derive { name="CoCiteStats"; version="1.41.0"; sha256="0shp06qy8cvwq0723xc7qxrxv9qhkids3gq3aqqhlvn1s66nw7nq"; depends=[AnnotationDbi]; }; +CoGAPS = derive { name="CoGAPS"; version="2.3.1"; sha256="037abxyw5xkj537di2q3q75isb2qr2h2czr5a6q30g8qzh1xj3ik"; depends=[BH gplots RColorBrewer Rcpp]; }; +CoRegNet = derive { name="CoRegNet"; version="1.5.0"; sha256="14yq1f005fcfmfp88h2fy05gdgbskjws11qbdh0ndx3sf93nzxm2"; depends=[arules igraph shiny]; }; +CompGO = derive { name="CompGO"; version="1.5.0"; sha256="128ib7w0jxba0p32s796i864b73zjfxac56znd0v4wv4vxv3jiv6"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer]; }; +ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.1.9"; sha256="127w7bhjmzzav3y6vz3dhr5da37vzl86xriy32rhiyppbxx34s78"; depends=[circlize colorspace GetoptLong RColorBrewer]; }; +ConsensusClusterPlus = derive { name="ConsensusClusterPlus"; version="1.23.0"; sha256="13iikfh234d2z4k487lb3shmnrfijygrf6gz3x481gba2psnbjyw"; depends=[Biobase cluster]; }; +CopyNumber450k = derive { name="CopyNumber450k"; version="1.5.0"; sha256="0mjhmh4shgckv43zvg4yqr17jfi9p9xnc40fwy9fw9c4vjcfsvsj"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; }; +CopywriteR = derive { name="CopywriteR"; version="2.1.2"; sha256="0lja77qdfbsl9cc1nv4jbrjwiq8bb93ja6na8hqksrrm9g1qs4q4"; depends=[BiocParallel chipseq data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; +CorMut = derive { name="CorMut"; version="1.11.0"; sha256="0s92bh3610frxbm0gqvlznay70dy7x61hvc0qgh6xmcyz0llx27g"; depends=[igraph seqinr]; }; +Cormotif = derive { name="Cormotif"; version="1.15.0"; sha256="1v36ylwkxr6yqasckmmj2dkr7s72f39srhwvm93rs1rl7kw4dc4p"; depends=[affy limma]; }; +CoverageView = derive { name="CoverageView"; version="1.5.0"; sha256="0ix1xy0in3nzd1lm9imy1wrm347dib5nfa6105zkc993bnh11wls"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; +DART = derive { name="DART"; version="1.17.1"; sha256="1z7lf4d9yjcyikq9j3348z5sxjqaly46c0ls7f9cl8nnqdpw7w42"; depends=[igraph]; }; +DASiR = derive { name="DASiR"; version="1.9.0"; sha256="0b3b7kmhsd6bb1s57c89h495j1ax6779wfca112fq6ba3z4dih3n"; depends=[Biostrings GenomicRanges IRanges XML]; }; +DAVIDQuery = derive { name="DAVIDQuery"; version="1.29.0"; sha256="0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2"; depends=[RCurl]; }; +DBChIP = derive { name="DBChIP"; version="1.13.0"; sha256="0gk9kgmyp9540sq5gpbn77ii8rl5kjm0nxsr80r5cn4q9gsjyyis"; depends=[DESeq edgeR]; }; +DECIPHER = derive { name="DECIPHER"; version="1.15.0"; sha256="1kbdsqvkznzsk4ljy91r5ipndwxb8hhkm46qqkakgr24mia3yvl1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; +DEDS = derive { name="DEDS"; version="1.43.0"; sha256="1z049ppkrbyp0xjpiygz5i6rbxbv3vvnvspwz2vv77495v7ykj6z"; depends=[]; }; +DEGraph = derive { name="DEGraph"; version="1.21.0"; sha256="17f04qngcx8y4glr5wiryi8fifbla8fxh8nb6wagnrai5x6vhzis"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; +DEGreport = derive { name="DEGreport"; version="1.3.0"; sha256="0qz7zmg9r76pwmn4hfpwagaij080pwmj7373h9fiiqk51416pqkq"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg rjags]; }; +DEGseq = derive { name="DEGseq"; version="1.23.0"; sha256="0993f140wwv9z9l53f9g74x7l28bflxq7wdcbilfz7ijhh7isr7p"; depends=[qvalue samr]; }; +DESeq = derive { name="DESeq"; version="1.21.0"; sha256="13f6phdf9g325dlpn38l7zrq3mzldhldil134acxi9p3l50bx23y"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; +DESeq2 = derive { name="DESeq2"; version="1.9.10"; sha256="1mvxhw7nzcv2p5kr90yyv29dl8vqcvz9y4z0vgpbl6s4qh741br4"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; +DEXSeq = derive { name="DEXSeq"; version="1.15.6"; sha256="19hjrdfl28jma8jb00b0dywqpj07bas623avqaw0c2xns2zrb224"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; }; +DFP = derive { name="DFP"; version="1.27.0"; sha256="0xcipbhfzvrpbm6dh2y3lbvfbwpn4wly32sssfm702zik5wm9dy1"; depends=[Biobase]; }; +DMRcaller = derive { name="DMRcaller"; version="1.1.1"; sha256="1g7q7cwivvb0m2y4fixvbxp51zfag1jv66bdlai3gawr94pcx56y"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; +DMRcate = derive { name="DMRcate"; version="1.5.0"; sha256="12q6if9lljia37zwhcc9fpcp9vhkp1qhzchpypwwyn2j4344bmp3"; depends=[limma minfi]; }; +DMRforPairs = derive { name="DMRforPairs"; version="1.5.0"; sha256="0d14qgx07xq7wa687a2znpfw0zcg8ccvxjawkjdbi6ayjwpb6zd7"; depends=[GenomicRanges Gviz R2HTML]; }; +DNAcopy = derive { name="DNAcopy"; version="1.43.0"; sha256="1v1i4bfkblimdmazv29csqr46jaiv8lncihgywvq5wfn8ccr7xl9"; depends=[]; }; +DOQTL = derive { name="DOQTL"; version="1.3.0"; sha256="0g3nyamqdhjg8105kcq6nsgjgqzcxkp04194j82v1xb31baj53bg"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt corpcor GenomicRanges hwriter IRanges mclust QTLRel Rsamtools RUnit S4Vectors XML]; }; +DOSE = derive { name="DOSE"; version="2.7.7"; sha256="0bdn26akwvhw3aksxw68mjn1s462vv9y12v6wlykpp2sla1naywv"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; }; +DSS = derive { name="DSS"; version="2.7.1"; sha256="1vf9j3clb7ac1zm8wx8vi0kmsv6p6533qxv4932gjcs5nn482516"; depends=[Biobase bsseq]; }; +DTA = derive { name="DTA"; version="2.15.0"; sha256="0amibwj5mnm2plkf3ys8sgy4lpwr60fnvika0psdrahgb4blmkzp"; depends=[LSD scatterplot3d]; }; +DeconRNASeq = derive { name="DeconRNASeq"; version="1.11.0"; sha256="0665chwpbs2pw753nb2x65cs9r9ghb5123bsrzrv6pz2p3ni8yz7"; depends=[ggplot2 limSolve pcaMethods]; }; +DiffBind = derive { name="DiffBind"; version="1.15.3"; sha256="1akx65vi8razwpfxnvilh4x1vb8qbsfr2q8lygsb3imfrrb83q44"; depends=[amap edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rsamtools SummarizedExperiment systemPipeR zlibbioc]; }; +DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.11.1"; sha256="1ds5gghxs4nb171cvahnb70s86hpqib6alijjfgdzcax09miw72v"; depends=[IRanges S4Vectors]; }; +DriverNet = derive { name="DriverNet"; version="1.9.0"; sha256="0visiafw9m7i0yy70fvnmdkhg9z946sg5hdl5vnvj8c6g3mfacxy"; depends=[]; }; +DrugVsDisease = derive { name="DrugVsDisease"; version="2.9.0"; sha256="1wmw1r0x7kkmp47743aq0pp71wamnf5gsk6bhz6rdvswzb12iyqk"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt GEOquery limma qvalue RUnit xtable]; }; +DupChecker = derive { name="DupChecker"; version="1.7.0"; sha256="02wwwnx3w8rxiassd62xr295paw8py9pqsk1396qb5k773l6bfxv"; depends=[R_utils RCurl]; }; +DynDoc = derive { name="DynDoc"; version="1.47.0"; sha256="0gpmhqav4dx8p86pkh18fpmlki60zqaz00m2zhziiawigbrz41ph"; depends=[]; }; +EBImage = derive { name="EBImage"; version="4.11.2"; sha256="1mnpwf844lgz4agk9w67pyppz6kq6fqbmarpv6pkwc9p3jb05nsy"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; }; +EBSeq = derive { name="EBSeq"; version="1.9.1"; sha256="0c65iiw9qxk6pqmnnjxdncpfvddgbvdfghshb4qpida4zp1yc7sg"; depends=[blockmodeling gplots]; }; +EBSeqHMM = derive { name="EBSeqHMM"; version="1.3.1"; sha256="0lyf363f1wfgacrj5cyq8n3f3ssl5q400mn2q94cpai6k0qmvgs1"; depends=[EBSeq]; }; +EBarrays = derive { name="EBarrays"; version="2.33.0"; sha256="1zvfqf49chiks5vmj5ki89pvy14bm1cman47n3ybba1gg8z8mw94"; depends=[Biobase cluster lattice]; }; +EBcoexpress = derive { name="EBcoexpress"; version="1.13.0"; sha256="0fl0a7xasqcwvjlgf3h51akyhwpras2865m2idz1nmacm42q1w79"; depends=[EBarrays mclust minqa]; }; +EDASeq = derive { name="EDASeq"; version="2.3.0"; sha256="1myqbcgyah325yh04cb70bgrqpwgikdkda77m4g5g5zn570s6bd3"; depends=[aroma_light Biobase BiocGenerics DESeq IRanges Rsamtools ShortRead]; }; +EDDA = derive { name="EDDA"; version="1.7.0"; sha256="0dyyhnc9v232njqnrcaq78g2m1qws30qcf6bsswq2di235ymk2g0"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; +ELBOW = derive { name="ELBOW"; version="1.5.0"; sha256="0lnc5hw2x4p9yd561w9dwplf7q2slcaghxsh5796bmyxjxhxanpy"; depends=[]; }; +ELMER = derive { name="ELMER"; version="0.99.8"; sha256="1xvl12f8wmwc8crdl810vkszgxik649w0km581jvpy1azr6z2vjk"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges minfi reshape S4Vectors]; }; +EMDomics = derive { name="EMDomics"; version="1.1.0"; sha256="1i2dy2vqig0lkd13xy4yfwq58zyjiqavpmcvg6pvkh2l48ap1jds"; depends=[BiocParallel emdist ggplot2 matrixStats]; }; +ENCODExplorer = derive { name="ENCODExplorer"; version="1.1.3"; sha256="054cm1ldas26gv4xn16w3i25kykwnikj4s83g7sxxdij93m5rmlb"; depends=[jsonlite RSQLite]; }; +ENVISIONQuery = derive { name="ENVISIONQuery"; version="1.17.0"; sha256="1dnlw62hwysij63yc856c2sncgfwdq0rpmcds6i6wigdcfd21w8q"; depends=[rJava XML]; }; +ENmix = derive { name="ENmix"; version="1.1.4"; sha256="1pcbklxcfnfqwlfwax9n8aql2gaak596gph4xqq5xf64mj5f4qqv"; depends=[Biobase doParallel foreach geneplotter MASS minfi preprocessCore sva wateRmelon]; }; +EasyqpcR = derive { name="EasyqpcR"; version="1.11.1"; sha256="0s2jyg6b14wbyl0c1n89c7bi7p88g7s1rz8d830p9hh2x75ly6zj"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; +EnrichmentBrowser = derive { name="EnrichmentBrowser"; version="1.3.0"; sha256="1a6w3drh5x20wvxpx1cb5q2h9k6jh65v9hh81924lcp4baplpx31"; depends=[Biobase graph KEGGgraph KEGGREST limma MASS mixtools neaGUI qvalue RColorBrewer Rgraphviz safe SPIA stringr]; }; +ExiMiR = derive { name="ExiMiR"; version="2.11.0"; sha256="1gmfrn3jq4pz5wmijywhxr0kx79534fhrfnqyhjmqq3s9sjn2cbh"; depends=[affy affyio Biobase limma preprocessCore]; }; +ExpressionView = derive { name="ExpressionView"; version="1.21.0"; sha256="026w9f119j26c1078nwg4rhfc54wlb3i56iy8bi0cjpvbm4p698f"; depends=[AnnotationDbi bitops caTools eisa isa2]; }; +FEM = derive { name="FEM"; version="2.3.0"; sha256="112mmah33ar36cpqjwanrfyhdwjfympnvmxwirxbbnk0nfp9cvpr"; depends=[AnnotationDbi corrplot igraph impute limma marray Matrix]; }; +FGNet = derive { name="FGNet"; version="3.3.2"; sha256="000s0f6wki96w5di3gxhn70iwyrnwj5359s3a5ns2a0z0qnr05ww"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; +FISHalyseR = derive { name="FISHalyseR"; version="1.3.0"; sha256="0xnmww7ldyxghq7mfjc3zhx1qahskmny3088ar0mj9v4iz4a987q"; depends=[abind EBImage]; }; +FRGEpistasis = derive { name="FRGEpistasis"; version="1.5.0"; sha256="1vvcphgirvghzjvic5yq6nl229ryc0y4kp5qd25kgspbcgblg01q"; depends=[fda MASS]; }; +FlowRepositoryR = derive { name="FlowRepositoryR"; version="1.1.1"; sha256="1xxljbdbvxg1dbm82r86frw2bskmfrl6rv98xz0z4jfc0w4ag3pd"; depends=[RCurl XML]; }; +FlowSOM = derive { name="FlowSOM"; version="1.1.0"; sha256="0k5pw46dbhm6nssr5szj251v3479xgky2iipihrdvp5lr5lhxilq"; depends=[BiocGenerics ConsensusClusterPlus flowCore igraph tsne]; }; +FourCSeq = derive { name="FourCSeq"; version="1.3.3"; sha256="1zny041wfg4c9cfdx0kr3a5nsl48zn6fccb8dixp4q61nm621zra"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; +FunciSNP = derive { name="FunciSNP"; version="1.11.0"; sha256="19kl14yzqr59ngrd5ygr858zbvx23rihlr4vw5bfdy9cgwlvlzab"; depends=[AnnotationDbi ChIPpeakAnno GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer scales snpStats VariantAnnotation]; }; +GENE_E = derive { name="GENE.E"; version="1.9.0"; sha256="10c9mw9f619z2ai43qvagj7p1lsqpv90z8vzsyyxym614lvlqfzm"; depends=[RCurl rhdf5]; }; +GENESIS = derive { name="GENESIS"; version="1.1.0"; sha256="01d3yc5rc4y22znr7zf980m458qvnmjxpml353k7bkwyz6xyn0fj"; depends=[GWASTools]; }; +GEOmetadb = derive { name="GEOmetadb"; version="1.29.0"; sha256="1s9x3dbh61xisk5hwzqv3991savygdcwv5cww447w4bfgwffzplg"; depends=[GEOquery RSQLite]; }; +GEOquery = derive { name="GEOquery"; version="2.35.4"; sha256="1ny592c1s36a1hkgaqqyss65c190bw5612l23qc9y9qhf4sarq38"; depends=[Biobase RCurl XML]; }; +GEOsubmission = derive { name="GEOsubmission"; version="1.21.0"; sha256="1rr8k4myw7jibibclphj63hp4byk3v0cg37vnyc5b0iacdp8s9gn"; depends=[affy Biobase]; }; +GEWIST = derive { name="GEWIST"; version="1.13.0"; sha256="1mlzyjggv0rh9xk9pifshhdri3vapvzk2h47g75wx57yfapamcwn"; depends=[car]; }; +GGBase = derive { name="GGBase"; version="3.31.1"; sha256="0nyq5rv5mfvvh2h9f1d7b5agwhjagpzjgfm8x0bwpdbz6k691glx"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; +GGtools = derive { name="GGtools"; version="5.5.1"; sha256="0r16yc6j68baf7pl3f708ys745px6qgpgbvcjiqqg7vgcj4qyq0h"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; +GLAD = derive { name="GLAD"; version="2.33.0"; sha256="19db59ry832vrbk86p1bppr52mwri2pz8iwx5ibg18pxr7pw6jw7"; depends=[]; }; +GOFunction = derive { name="GOFunction"; version="1.17.0"; sha256="0scjk4zlfrqv3z6ii0bvmhj3d880xyc2p5f4hqmfqn6cml0d6ncj"; depends=[AnnotationDbi Biobase graph Rgraphviz SparseM]; }; +GOSemSim = derive { name="GOSemSim"; version="1.27.3"; sha256="0d57my1zmlfsx1d1i55q82s4vzz6v7a7q8h8fkxxzs7wl8pjk5jh"; depends=[AnnotationDbi Rcpp]; }; +GOSim = derive { name="GOSim"; version="1.7.0"; sha256="0dzx6nnd8p4p5v5rsmbpw6wl0i1jq3n4s0qc8z4xnp2n2757r2z4"; depends=[annotate AnnotationDbi cluster corpcor flexmix graph Matrix RBGL Rcpp topGO]; }; +GOTHiC = derive { name="GOTHiC"; version="1.5.2"; sha256="1jxg3hfyy96nwgmpk4ivl2wp3i050n7zahbawiz6d8f2hxcv44zg"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; }; +GOexpress = derive { name="GOexpress"; version="1.3.1"; sha256="0wqip9ibzjy73b431wlifb6c01c397wkl7nldpj3mvd25s73p102"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; }; +GOstats = derive { name="GOstats"; version="2.35.1"; sha256="1almz6gc2xm3njz8pjvynpnniz7xdd8z5293cfvx91v11lz70v7f"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category graph RBGL]; }; +GOsummaries = derive { name="GOsummaries"; version="2.3.0"; sha256="09c4grz9ljwrz37yv9k6gna9zxk708vxfz2190xz7za0mrql1k3k"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; +GRENITS = derive { name="GRENITS"; version="1.21.0"; sha256="1lm0074dw0248vyj9wl99if489dx38ia8wscx61842jyi4qz7r2q"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; +GSAR = derive { name="GSAR"; version="1.3.0"; sha256="1mf7v3v7arcrkx1207wsr0ajjqk8ipq2j9fdd6677ard7xvdj6zl"; depends=[igraph]; }; +GSCA = derive { name="GSCA"; version="1.7.0"; sha256="1hv9r59fx1hbjnga26shb8crxji1bzmzjmwfbk1wrlm8dsikjnyg"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; +GSEABase = derive { name="GSEABase"; version="1.31.3"; sha256="1jq3s3pha624gns7d7yf8qqgzq0fm3qgjrkwdkxgbpc7b09baiz0"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; +GSEAlm = derive { name="GSEAlm"; version="1.29.0"; sha256="13ixp6vq9g9ag5rndc40gw64vny70zcj6lll7r7vz06p5i9b6kyk"; depends=[Biobase]; }; +GSRI = derive { name="GSRI"; version="2.17.0"; sha256="158dipqi9mh79d42pv5qsa1gwxz660kl474rdnkd59rnxh7ziyf3"; depends=[Biobase fdrtool genefilter GSEABase les]; }; +GSReg = derive { name="GSReg"; version="1.3.0"; sha256="07s60j68i1r64y8x8r1r9s6w020n41137cf2aj9hrsw6gn4ajh15"; depends=[]; }; +GSVA = derive { name="GSVA"; version="1.17.0"; sha256="0rk1srk95qia5ap69c2lysgv7r8qh50f50v9b569d2v2vjb0hpq5"; depends=[Biobase BiocGenerics GSEABase]; }; +GWASTools = derive { name="GWASTools"; version="1.15.8"; sha256="1rbpvscz7ghssxan02xs14cx7x69wi7vydai9q6ljl7nkazh4hgj"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; }; +GeneAnswers = derive { name="GeneAnswers"; version="2.11.1"; sha256="15rf8syxhj3332d7f4jkvyby05r3iia7p1ryz1zv629waz6mr4nh"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; +GeneExpressionSignature = derive { name="GeneExpressionSignature"; version="1.15.0"; sha256="0wni584412af8a2wzk5r8nf63grw86d6fk74cmwksirw2734mmqs"; depends=[Biobase PGSEA]; }; +GeneGA = derive { name="GeneGA"; version="1.19.0"; sha256="0irfr4q55rda8acchgcqsksh6ija87fryj822nb3d4zklv9raqfv"; depends=[hash seqinr]; }; +GeneMeta = derive { name="GeneMeta"; version="1.41.0"; sha256="10c99i6bm3aid20xm59acqsa2hzvp5ym98nlb8fyscyigbrzvid8"; depends=[Biobase genefilter]; }; +GeneNetworkBuilder = derive { name="GeneNetworkBuilder"; version="1.11.0"; sha256="0ynjmb7a1jk2gzxynjzdh6qw90h3f2r7yxwi94ql7hq7l2jhl051"; depends=[graph plyr Rcpp]; }; +GeneOverlap = derive { name="GeneOverlap"; version="1.5.0"; sha256="0n1vy6hfzac73x1dy9abrgyhhs91zhikhy11zhw07j8ciswymm84"; depends=[gplots RColorBrewer]; }; +GeneRegionScan = derive { name="GeneRegionScan"; version="1.25.0"; sha256="0w7lfj2d0ih8gyr148digrfs5dmmixzyghx73vjcd60kk5bgcr80"; depends=[affxparser Biobase Biostrings RColorBrewer]; }; +GeneSelectMMD = derive { name="GeneSelectMMD"; version="2.13.0"; sha256="1yddwwln50v9ivsnv4hzy5azk0rs480plpplqc058xixjvyy2k1l"; depends=[Biobase limma MASS survival]; }; +GeneSelector = derive { name="GeneSelector"; version="2.19.0"; sha256="0i63g36hz26493i4676bbbwy71f3m928bj4bn7zxcf5ax4jqac1j"; depends=[Biobase limma multtest samr siggenes]; }; +GeneticsDesign = derive { name="GeneticsDesign"; version="1.37.0"; sha256="08awfvk4n6j3y1ncf0r7zwmiyywz9k3xflg5ll4ilxx5pjn8lrnn"; depends=[gmodels gtools mvtnorm]; }; +GeneticsPed = derive { name="GeneticsPed"; version="1.31.0"; sha256="17fs4gvirji3qp9ik480jpz6qrbq209sjhn57ipkaafvx7rw5j4i"; depends=[gdata genetics MASS]; }; +GenoView = derive { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v"; depends=[biovizBase GenomicRanges ggbio ggplot2 gridExtra]; }; +GenomeGraphs = derive { name="GenomeGraphs"; version="1.29.0"; sha256="0kl2gapg7hnl4zfsamb3vwmj7z0vag7vd8viwh0pwqj0pd45dswa"; depends=[biomaRt]; }; +GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.7"; sha256="1hk3q4wr87wflrcqrpdng70d42irf3v4i6av224pqq3h33j0iwpc"; depends=[BiocGenerics IRanges S4Vectors]; }; +GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.9"; sha256="15zwx5z54cr3ix55m70682n1xxfbbx92z3m0qr7srsn8q9ycc8kj"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; +GenomicFeatures = derive { name="GenomicFeatures"; version="1.21.13"; sha256="1swk94rqpvfysr3x1r61ypq9vlw1ryc0iw0x6dazfjjchaln0h07"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors]; }; +GenomicFiles = derive { name="GenomicFiles"; version="1.5.3"; sha256="03iq136ff0dymfnwyizq9zyzr3smahwp8p6ifc7yf1hwd0nql3wa"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; +GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.3"; sha256="0z5c8n0xnyxrdhvffyx8mnpj2qhclknn1gjn3ikmw9cprzlbcb6n"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges plotrix Rsamtools rtracklayer S4Vectors stringr]; }; +GenomicRanges = derive { name="GenomicRanges"; version="1.21.15"; sha256="0sjv8b6vhqpg54v83zkai57xmx0axq7khr35l89b4rc3qd9i8k5c"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; +GenomicTuples = derive { name="GenomicTuples"; version="1.3.1"; sha256="0i91qs1c84lyh0irhgnbnnvag0j3f48gfxxndk5x0yjf9kpa0hca"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; +Genominator = derive { name="Genominator"; version="1.23.0"; sha256="03pacbd3d5q7ykrflg258zcf8yfzm8kc976aw3d38q7agkia69h2"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; +GlobalAncova = derive { name="GlobalAncova"; version="3.37.0"; sha256="1j35r39plsxlkla2bv7wvg0if5gs2mfy71g6zb65g6ml5cqws45r"; depends=[annotate AnnotationDbi corpcor globaltest]; }; +GoogleGenomics = derive { name="GoogleGenomics"; version="1.1.1"; sha256="06mcg36x41k9s9ick6y3vrg5r4fnkz5qb77a7dh7kk2skinvzips"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; +GraphAT = derive { name="GraphAT"; version="1.41.0"; sha256="1mjd54zy4l7ivy347zn5rv6gn65sjhxn2cxm417fm83hm542327l"; depends=[graph MCMCpack]; }; +GraphAlignment = derive { name="GraphAlignment"; version="1.33.0"; sha256="14zxbw8cj12wr6c2a0a6mfskr9sqf6cdfyz0ccbzy91d1lnrxzdf"; depends=[]; }; +GraphPAC = derive { name="GraphPAC"; version="1.11.0"; sha256="1p0rkc1qz0yf0lxyjfvrpd7nqky855kmhb1pdwxg3ckifnypw5mc"; depends=[igraph iPAC RMallow TSP]; }; +GreyListChIP = derive { name="GreyListChIP"; version="1.1.1"; sha256="0kbl9m37aiyv6yrqg4z352k7dpdpxm7yywymjfa9gdd0rv1cy401"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer]; }; +Gviz = derive { name="Gviz"; version="1.13.2"; sha256="0na13x76dlnddiijxigr4j75xb9dcg32j0gbkqkzjak9azp8szys"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; +HCsnip = derive { name="HCsnip"; version="1.9.0"; sha256="14f881v776xn8lw4lvjc26s72laxs9zph902875f76ykbzygayd9"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; }; +HDTD = derive { name="HDTD"; version="1.3.2"; sha256="19kzd1sjl0riwisdbrsy9j2pd39lpxwmizrnnj65hrfv6dwaqsgq"; depends=[]; }; +HELP = derive { name="HELP"; version="1.27.0"; sha256="1n2fj316ha2l941biyr9d56pry6n39drwa820rgyrwd116rzx79d"; depends=[Biobase]; }; +HEM = derive { name="HEM"; version="1.41.0"; sha256="0qi6q305p0vdhyah3860dpd3z0lyyn6wn5x0m3mj3p739pk288ik"; depends=[Biobase]; }; +HIBAG = derive { name="HIBAG"; version="1.5.0"; sha256="0rrpz4brij408szfmzv7gpk0hrhikjyx061gkamb02ry1my722j1"; depends=[]; }; +HMMcopy = derive { name="HMMcopy"; version="1.11.0"; sha256="1lcddw963lryks9xc0faw8x0pin4k4r9zdfl5iqi5mbrzn5pp7h3"; depends=[geneplotter IRanges]; }; +HTSFilter = derive { name="HTSFilter"; version="1.9.0"; sha256="1y5k26jc2gfrwp0l7jsx6br70hsxqhgdvmhbsagsampl67yjw6by"; depends=[Biobase DESeq DESeq2 edgeR]; }; +HTSanalyzeR = derive { name="HTSanalyzeR"; version="2.21.0"; sha256="1drmd4jycb85wg857daj3jpkj9gxa5asyv2sd873daj03q9c1yld"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; +HTSeqGenie = derive { name="HTSeqGenie"; version="3.19.0"; sha256="0i9h6qn2fpcp6wy0ssnls8x6nz4azs93wb4qq5bpmps8wkp0na36"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer ShortRead VariantAnnotation VariantTools]; }; +HTqPCR = derive { name="HTqPCR"; version="1.23.0"; sha256="0zp7jbnh5zbrqaq84q1146sb3qg8n0kz6m9v5mi8a9l2fcvg2q09"; depends=[affy Biobase gplots limma RColorBrewer]; }; +Harshlight = derive { name="Harshlight"; version="1.41.0"; sha256="12wpfg785dfn5gwp014dfzk9x8zqvr9qrrs0pq32by576knida5z"; depends=[affy altcdfenvs Biobase]; }; +Heatplus = derive { name="Heatplus"; version="2.15.1"; sha256="1jcrajxvll0hhrsq8qvvyc1sj1nd3dm06n8q25qi9nacnfi865y7"; depends=[]; }; +HiTC = derive { name="HiTC"; version="1.13.1"; sha256="0mhfrxhfd11218pw6yn0l7dn3x5k90s07k53h1gj1j93i64gzzxg"; depends=[Biostrings GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; +HilbertVis = derive { name="HilbertVis"; version="1.27.0"; sha256="1qcyzn86v0xhb9zc1vcia1n53i33sgncbb7lpink5llmjpalacq6"; depends=[lattice]; }; +HilbertVisGUI = derive { name="HilbertVisGUI"; version="1.27.0"; sha256="03jxn398xv97mmvbpl0qymmydhm4i4c36qnw4s22ch7wy3h9x6h8"; depends=[HilbertVis]; }; +HybridMTest = derive { name="HybridMTest"; version="1.13.0"; sha256="0r4j8yllxzwn5r2rvpkqx6w23836lmly8wlshib6p917ky0djw4s"; depends=[Biobase fdrtool MASS survival]; }; +IMPCdata = derive { name="IMPCdata"; version="1.3.0"; sha256="003qvf47bcfcwxkw7zpzdvpnw7xhd2y12n9by2b1ns5i5jka754b"; depends=[rjson]; }; +INPower = derive { name="INPower"; version="1.5.0"; sha256="0msz24bixp7b5a83n40675xq8fglrhbg8972a93x2k8jgb5gdh38"; depends=[mvtnorm]; }; +IPPD = derive { name="IPPD"; version="1.17.0"; sha256="0afhz5ishr1my9gnksa4dl92lfnb2fnvdpsh3n7kj4j2s8xx0crc"; depends=[bitops digest MASS Matrix XML]; }; +IRanges = derive { name="IRanges"; version="2.3.11"; sha256="06914mn3x097km2i4p8z4zj99msr1dvlqk50ari1djcnww0im251"; depends=[BiocGenerics S4Vectors]; }; +ITALICS = derive { name="ITALICS"; version="2.29.0"; sha256="16l0wq7bxi3nz8f5hggnzddhg07vrcca480ygvmi03cxajxbjr9h"; depends=[affxparser DBI GLAD oligo oligoClasses]; }; +IVAS = derive { name="IVAS"; version="1.1.0"; sha256="15jnmi40bsnyf5yw86gvqppv0g8250lsi74gsjzhm7gijhlxfnrm"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; }; +Icens = derive { name="Icens"; version="1.41.0"; sha256="1vi2hnzs8z5prggswa6wzr2y53jczkgg09f4vw0pjzkzi7p8bphy"; depends=[survival]; }; +IdMappingAnalysis = derive { name="IdMappingAnalysis"; version="1.13.0"; sha256="1kwalcvb7cxkg89kz5hpk0cvsfzxz5g2cbiflrs2dyaxx96pm5gm"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; +IdMappingRetrieval = derive { name="IdMappingRetrieval"; version="1.17.0"; sha256="0fclrkv53q9aq3xw95k25rw52sjzy40r37kajnrk0kc41cyzf2vv"; depends=[AffyCompatible biomaRt DAVIDQuery ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; +IdeoViz = derive { name="IdeoViz"; version="1.3.0"; sha256="1ynqg2a0jq23mlqzgf7k05jc2nkby8hkbc6h0p76ms33fwqj2qxz"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; +InPAS = derive { name="InPAS"; version="1.1.3"; sha256="1fyhrf1n7hb34l742d3jrjyyznhjvf6z8bdmjawsqr10dvk1j2mv"; depends=[AnnotationDbi BiocParallel BSgenome cleanUpdTSeq GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma S4Vectors seqinr]; }; +IsoGeneGUI = derive { name="IsoGeneGUI"; version="2.5.0"; sha256="05k6qdnsr2aywdmhdlimx5axrk07mf14rvia10afhf56380sdf3s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; +KCsmart = derive { name="KCsmart"; version="2.27.0"; sha256="1igsmg1l39yladz4dlc9j01nxkwfaciy575d7k6764jhrs6pv39m"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; +KEGGREST = derive { name="KEGGREST"; version="1.9.0"; sha256="0ms60slsf7lpw0yidpy47hyxi7cm9r0gyb0q6ajxv52vn9diz29v"; depends=[Biostrings httr png]; }; +KEGGgraph = derive { name="KEGGgraph"; version="1.27.2"; sha256="14giz5858nr1fz7fv0d98xnl8rmimnjq4n6s81b0pkiz4vsriqvn"; depends=[graph XML]; }; +KEGGprofile = derive { name="KEGGprofile"; version="1.11.0"; sha256="04fkdsjj5z0ib6y8gi03av9b5zz4sbw277xvkr199kh9xlrfcqgh"; depends=[AnnotationDbi biomaRt KEGGREST png TeachingDemos XML]; }; +LBE = derive { name="LBE"; version="1.37.0"; sha256="09ql13kc18b8zjvb3ny536k5704q9xxpv9xfqi4y4q32vavywj1x"; depends=[]; }; +LEA = derive { name="LEA"; version="1.1.0"; sha256="017cz56xiv9c2v2q3lwnmpb4j7iz2k1aww6c9kz9s0kcjjyi3sak"; depends=[]; }; +LMGene = derive { name="LMGene"; version="2.25.0"; sha256="17djx1fkjxpmmp56vphcbkgwpr56i375xc7rb76d94911grz9fh4"; depends=[affy Biobase multtest survival]; }; +LPE = derive { name="LPE"; version="1.43.0"; sha256="13z3h3mabbwhb5p40a7hil0aq10mya1zqgb8qj2qwnc50sbmgjx2"; depends=[]; }; +LPEadj = derive { name="LPEadj"; version="1.29.0"; sha256="1734ihzvid5bz2wyh7yskk7agd82xmw7dibzb7aivhcfyxs8g8p4"; depends=[LPE]; }; +LVSmiRNA = derive { name="LVSmiRNA"; version="1.19.0"; sha256="1z74y8zbg5amsmslb309gi630v8qa1qqgj37214bv5g9ab8xajmj"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; +LiquidAssociation = derive { name="LiquidAssociation"; version="1.23.0"; sha256="178gx8n0ga1ppjk368xacidms1rc2kn301fmdc8rwbcknwvxrwck"; depends=[Biobase geepack]; }; +LowMACA = derive { name="LowMACA"; version="1.1.0"; sha256="0i0pka0jf1yq7vjw1kb9sd2p21gpy4pw855ap815k02i0n7jyny4"; depends=[Biostrings cgdsr data_table motifStack RColorBrewer reshape2 stringr]; }; +M3D = derive { name="M3D"; version="1.3.4"; sha256="0yyhfs8frvyx0dk0k61a4xggqdrspx07jxhhl9q7bld026bv8d9d"; depends=[BiSeq GenomicRanges IRanges]; }; +MAIT = derive { name="MAIT"; version="1.3.1"; sha256="1kpcns5f9j41sg5694ng4d0w5gil2qwi9s1804gncnnh273jsv5z"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; +MANOR = derive { name="MANOR"; version="1.41.1"; sha256="0i1fk4c72k91i0w84b0swgdbd4igvbcrbcs12dqqxcslnqg44rs2"; depends=[GLAD]; }; +MBASED = derive { name="MBASED"; version="1.3.1"; sha256="0rdsv7qv5x6whb5jx4wzgcv88z6hwmf5ryz84liv7kg1i1pq1adn"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; +MBAmethyl = derive { name="MBAmethyl"; version="1.3.0"; sha256="1807sv9dj74la17m2jj0kzj1sqy4gqydkxax0ngifvyk920zr19n"; depends=[]; }; +MBCB = derive { name="MBCB"; version="1.23.0"; sha256="0swcr95qzgyjqpm6sc5z7ifc0vrj4hkpm7srfm2cb7d0dg0lk092"; depends=[preprocessCore tcltk2]; }; +MCRestimate = derive { name="MCRestimate"; version="2.25.0"; sha256="1zbajax2kk4dnk17l6vm6rxgqyxm1zly3i7x0y78bbk34ismcixj"; depends=[Biobase e1071 pamr randomForest RColorBrewer]; }; +MEDIPS = derive { name="MEDIPS"; version="1.19.2"; sha256="1k4bdvqsp9rrxadz79g4jvynn7832dq9sgdk0fnv5lk3sc004ypq"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; +MEDME = derive { name="MEDME"; version="1.29.0"; sha256="1fpi4ri134ii28nfiq2p875xinwvs8icrxvw158g5k7ixy1zx826"; depends=[Biostrings drc MASS]; }; +MEIGOR = derive { name="MEIGOR"; version="1.3.0"; sha256="1kif7m78w0w0qv4fqfby3rknqk56zk83dds3cm4pgv2cii61i9jy"; depends=[CNORode deSolve Rsolnp snowfall]; }; +MGFM = derive { name="MGFM"; version="1.3.0"; sha256="1h2bi2cchfxl0z31pgj6q6pb1jnmqvjy7jv2khp80h7sdr65356i"; depends=[annotate AnnotationDbi]; }; +MIMOSA = derive { name="MIMOSA"; version="1.7.0"; sha256="0kw2f3gk0fxfv393gh2mlnw4hy658j6ga20rhkbza1hzyyz44mvk"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; +MLInterfaces = derive { name="MLInterfaces"; version="1.49.0"; sha256="0h5pr3lkgr6wb2h8dik2p4zv62p1hx22anxsbzbxsd4k4n9yzxd4"; depends=[annotate Biobase BiocGenerics cluster gdata genefilter MASS pls rda rpart sfsmisc]; }; +MLP = derive { name="MLP"; version="1.17.0"; sha256="1wb6bzxn1paba2fxh62ldsfr4kr0nq2sy21v0pp0qwhfxndyzpdn"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; +MLSeq = derive { name="MLSeq"; version="1.7.0"; sha256="0vc5rz4l574hmzwn3q7c4giib0lzs720j0j3alvarb3lmfzx9mhq"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; }; +MMDiff = derive { name="MMDiff"; version="1.9.0"; sha256="0xvnv024cv540m0jv9lrb4s5rvc0mq4gwp6wvdgpnsnqnwi9j556"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; }; +MPFE = derive { name="MPFE"; version="1.5.0"; sha256="123a6qg761j46bs1ckd6yyr2igdfx6mik3aj7a1dcqjqy5qrvx6r"; depends=[]; }; +MSGFgui = derive { name="MSGFgui"; version="1.3.0"; sha256="0r7izs3wpd7l9agrm3mrr3kmm00s9fzljsjxhk4pzxkjg1ran4hp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; +MSGFplus = derive { name="MSGFplus"; version="1.3.0"; sha256="0q75mygrd56kr9hrrxlmckkgvhcrgvpgvbjdxjmz6jaqp5wfbkf5"; depends=[mzID]; }; +MSnID = derive { name="MSnID"; version="1.3.1"; sha256="0a0r2ikyb0spm110xzn3zzhl8g6xsvmh781d65f10l1iqnd2cqza"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; }; +MSnbase = derive { name="MSnbase"; version="1.17.4"; sha256="0ig62281xic977br9ddibcafrad2cwc49cqs7vz5i3gg9nf46iby"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; }; +MSstats = derive { name="MSstats"; version="2.7.0"; sha256="0zhv2c769biv6avb4csi7alabk76bfn0ykzwp0lc6ymzggbj9pil"; depends=[ggplot2 gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape]; }; +MVCClass = derive { name="MVCClass"; version="1.43.0"; sha256="1mbhfkvdkxw9xd76dd2pxk947w9wahwdsk9x1wcryrmwcdvaqqcz"; depends=[]; }; +MantelCorr = derive { name="MantelCorr"; version="1.39.0"; sha256="0l255m63q9idv56svs5m5bc4izwqnm3jy2z3kka7sw4xcx13l39g"; depends=[]; }; +MassArray = derive { name="MassArray"; version="1.21.0"; sha256="0pz3azrjc7akqh63ijhxmfzainz8nwfffylz6610k1a7yxpaxb1h"; depends=[]; }; +MassSpecWavelet = derive { name="MassSpecWavelet"; version="1.35.0"; sha256="1z2p9fdf57p3ryn25mn7ny910c8zrliw6jjwl34mjfp07kdf7hml"; depends=[waveslim]; }; +MatrixRider = derive { name="MatrixRider"; version="1.1.0"; sha256="0mfhlwr84yrfan7y1p14n8f1rj3331d6vdrsib3b52ws5y25cabd"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; +MeSHDbi = derive { name="MeSHDbi"; version="1.5.0"; sha256="1wcprr976jf9laah45jpmdx7aiy9f6vhamp5gk3npplr73i5m1ri"; depends=[AnnotationDbi Biobase RSQLite]; }; +MeSHSim = derive { name="MeSHSim"; version="1.1.0"; sha256="0v7vh8z2ddaaabnkg6hmfw34xp0gbm5jml1lfxrqpw18sy7rypnv"; depends=[RCurl XML]; }; +MeasurementError_cor = derive { name="MeasurementError.cor"; version="1.41.0"; sha256="11fkg2zxig0p5vws2a7avcwvn8c08qv3a665315ycainjsci7ay0"; depends=[]; }; +MergeMaid = derive { name="MergeMaid"; version="2.41.0"; sha256="0zy3jsrc8chzmhfv7swp56imjhfc33dfzf32nmncq0731882m3mx"; depends=[Biobase MASS survival]; }; +Metab = derive { name="Metab"; version="1.3.0"; sha256="041j2xn6gypg07l2snhqp940b682m30ra4iyla4dbqsncrailxpr"; depends=[pander svDialogs xcms]; }; +MethTargetedNGS = derive { name="MethTargetedNGS"; version="1.1.0"; sha256="0bspvxxmyf22079sapmimz3fdxz91g4mq0kj7ssf0mmp2847l57k"; depends=[Biostrings gplots seqinr stringr]; }; +MethylAid = derive { name="MethylAid"; version="1.3.1"; sha256="012ypjnw5ky6233dibx2hpryzbr66g86hm14cjfd45fzr08bv08z"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; }; +MethylMix = derive { name="MethylMix"; version="1.3.0"; sha256="181sz3ny79i8gaq3y2k0q56l03ii288lhy8xv1fsh94bjhihjgcd"; depends=[doParallel foreach optimx RColorBrewer RPMM]; }; +MethylSeekR = derive { name="MethylSeekR"; version="1.9.0"; sha256="1hp2qadkkkanp3cs0gqwyvn94qy1v34gcjhx730p55iq1had5dcf"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; +Mfuzz = derive { name="Mfuzz"; version="2.29.1"; sha256="06xzb670y19ry1fr97xw8j3gcagqnyaxlclscx3w1m2qfss5wi15"; depends=[Biobase e1071 tkWidgets]; }; +MiChip = derive { name="MiChip"; version="1.23.0"; sha256="0np5drks6nfg3aw8qm899syxv1z56608bhav1jid4ks9fwdi33bb"; depends=[Biobase]; }; +MiPP = derive { name="MiPP"; version="1.41.0"; sha256="1zp8j123fx82xdc3dvn4a17mspw2pdxxlyj4f750vzwc4ma9pj39"; depends=[Biobase e1071 MASS]; }; +MiRaGE = derive { name="MiRaGE"; version="1.11.1"; sha256="1nkvk07kgps9rzh362pczlsq0r7g8b85f4bdbi0ld5p0ijdd02f3"; depends=[AnnotationDbi Biobase BiocGenerics]; }; +MineICA = derive { name="MineICA"; version="1.9.0"; sha256="0gfdnlahsm206vw443ml872dr1k5sg6w9hsdd3gkwzm0lsrxqd7x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; +MinimumDistance = derive { name="MinimumDistance"; version="1.13.2"; sha256="09rpwh75gdn5s5i4vd3nk97ns04q7vfspbm7r0mjjrjnidd0fxlf"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; +Mirsynergy = derive { name="Mirsynergy"; version="1.5.0"; sha256="0nbdnz3m99r3zlkqqya4xs944a3zy0daqxbnf5gn4033z2kgd10s"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; +MmPalateMiRNA = derive { name="MmPalateMiRNA"; version="1.19.0"; sha256="0pnbzqh90vqcgsh1swvhy8w2k1vj24k5j9m4sb7qwhi2h5y1gzwa"; depends=[Biobase lattice limma statmod vsn xtable]; }; +MoPS = derive { name="MoPS"; version="1.3.0"; sha256="0sf7v7clghm48g2ryainsyvsl67nqq4xha71zc1r5w9fz33xa5mv"; depends=[Biobase]; }; +MotIV = derive { name="MotIV"; version="1.25.0"; sha256="0d57bsi1jl5xcsxrd6v7506hrjz7b8r4hy39rsd6d2rfnw1w49yl"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM]; }; +MotifDb = derive { name="MotifDb"; version="1.11.0"; sha256="1swfp50l4h4jas5r0yz558qqp74a8q62qbyxf6h7dzcs9s1krqhh"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; }; +Mulcom = derive { name="Mulcom"; version="1.19.0"; sha256="05mx5z188g7kwj7km9p54djjlf4kq4iwvf9fa8158ic5wd3ycyh7"; depends=[Biobase fields]; }; +MultiMed = derive { name="MultiMed"; version="1.3.0"; sha256="16hi69kpxz6q71nr909pbqp5qa20z1qn367vjs7146mpfn70rnwq"; depends=[]; }; +NCIgraph = derive { name="NCIgraph"; version="1.17.0"; sha256="103p0i4y9frkvdpzhpj9c0d78wc40650hbhfbhhmkv1a8zq5260v"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; }; +NGScopy = derive { name="NGScopy"; version="1.3.0"; sha256="09b323rx0v5dnck2dgq9rzzjk7dbpry74q6c4dkgvjvxkf7khh8m"; depends=[changepoint rbamtools Xmisc]; }; +NOISeq = derive { name="NOISeq"; version="2.11.1"; sha256="13q3v2jphridbjk1059c475xgw9ywkdyqf0b6pbl3pk9l3ag9dr9"; depends=[Biobase Matrix]; }; +NTW = derive { name="NTW"; version="1.19.0"; sha256="027rdvy8xpsa70g6x33v4fmzk8gyvd8p3lgf65ac36wcy120gyhl"; depends=[mvtnorm]; }; +NanoStringQCPro = derive { name="NanoStringQCPro"; version="1.1.1"; sha256="0mmbbxhxd7nh7mqzckw0as68ac0nv005liif0laadbz49y6p4rwm"; depends=[AnnotationDbi Biobase knitr NMF png RColorBrewer]; }; +NarrowPeaks = derive { name="NarrowPeaks"; version="1.13.2"; sha256="0cryjprj8y1fgn5xxzsyyv4zdzv5qy8405qkj47kvjbrk0kbr97s"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; +NetPathMiner = derive { name="NetPathMiner"; version="1.5.0"; sha256="0z0bppsvy1zzbx8fspmsgzw7vzf5x649762znaqpfabvy6bpp2xk"; depends=[igraph]; }; +NetSAM = derive { name="NetSAM"; version="1.9.0"; sha256="1bdch37kk1clb8cyffrlcr6d5qykk5a5ql3dfi94bw1l0w6v4fjq"; depends=[graph igraph seriation]; }; +NormqPCR = derive { name="NormqPCR"; version="1.15.0"; sha256="0nfjnx5id04nbkda9v66418yzpp88mq2ijsfn8jyg0sfika405nl"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; +NuPoP = derive { name="NuPoP"; version="1.19.0"; sha256="1dpqmhbwr1l95vgjxlw3xayjxksa909xj05jbf4x3gafnlkkdvbk"; depends=[]; }; +OCplus = derive { name="OCplus"; version="1.43.0"; sha256="1x7yqb6hkbglvr0kkq5s7caxambdvzc0f38gahq68wfsfwln7b49"; depends=[akima multtest]; }; +OLIN = derive { name="OLIN"; version="1.47.0"; sha256="19wjz96104rn88pdflixb790qhj24ff4s3hc09ldcii1pfzm0sdw"; depends=[limma locfit marray]; }; +OLINgui = derive { name="OLINgui"; version="1.43.0"; sha256="0714bzbsmd7bsdm5zk05g83yy48z3rlazpv17xbn38ljpykawzjb"; depends=[marray OLIN tkWidgets widgetTools]; }; +OSAT = derive { name="OSAT"; version="1.17.0"; sha256="1ky9xb5ls3xnzinsrxrgggb4r0fmm1q33vxb3ajav7nygyxijq0d"; depends=[]; }; +OTUbase = derive { name="OTUbase"; version="1.19.0"; sha256="0xmp446v57z875lmjkg47f9hx961af9nda658v8qlbjxf1wjw9zb"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; +OmicCircos = derive { name="OmicCircos"; version="1.7.0"; sha256="1xil5043hgpypaww1a1wvcxw9im9jmzgdp83p3z71giqiq36dvh4"; depends=[GenomicRanges]; }; +OmicsMarkeR = derive { name="OmicsMarkeR"; version="1.1.0"; sha256="1fw6zfp5jrkvxjb6j48q3n1fqkm1qmmjjvmr70v93hi5jg0an8gy"; depends=[assertive caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; +OncoSimulR = derive { name="OncoSimulR"; version="1.3.2"; sha256="0bm4p5wpp32kd90c7mx76d8iy1jxxfssnkg3wrrglcfi0qqzs404"; depends=[data_table graph Rcpp Rgraphviz]; }; +OperaMate = derive { name="OperaMate"; version="0.99.6"; sha256="0xh57d82rmfcs1a6gj0qcjf585drhzns5k69bwxb7x1xw63wp4kp"; depends=[ggplot2 MASS pheatmap RDAVIDWebService]; }; +OrderedList = derive { name="OrderedList"; version="1.41.0"; sha256="1cw8y5f5h15z0qwg8n4dq7g3ixx2wa332rdsb4w2qqmcqlz79bfp"; depends=[Biobase twilight]; }; +OrganismDbi = derive { name="OrganismDbi"; version="1.11.32"; sha256="15zl741nw38yq07wp8rp5w1jzvyg8cz10dcyirv28rqs9nhz6q7b"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; }; +OutlierD = derive { name="OutlierD"; version="1.33.0"; sha256="0bljxmrnlqcngzzv6yxjsim7gd4icyi384vimn5gs869mq9gyrj3"; depends=[Biobase quantreg]; }; +PAA = derive { name="PAA"; version="1.3.0"; sha256="1786prxxf3yk4zgs8qcrnxf9i7b3dwaq21cj2hsz4xsrnskygcs0"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; }; +PADOG = derive { name="PADOG"; version="1.11.0"; sha256="0x84k32fmd1zrwjc4f71mq4jslh9bxr4gjbl48k1f5kl5j6hlxj3"; depends=[AnnotationDbi Biobase doRNG foreach GSA limma nlme]; }; +PANR = derive { name="PANR"; version="1.15.0"; sha256="0nc2a10z7i16dz41yhz3zw9h51myxzxbxd1vpc2d8gczks07n6ch"; depends=[igraph MASS pvclust RedeR]; }; +PAPi = derive { name="PAPi"; version="1.9.0"; sha256="1553fxm3ma3p5j10acyk5m2wx4dafp346x0pyxj9aah856h4zkw5"; depends=[KEGGREST svDialogs]; }; +PAnnBuilder = derive { name="PAnnBuilder"; version="1.33.0"; sha256="0larxmdzdb33hpv2m7n4kdjkmmc7pn8dl0b1x43fl54dq5xwvzpg"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; +PCpheno = derive { name="PCpheno"; version="1.31.0"; sha256="1crk56kzfb9smdaagv44l7h2hh1qc15zyl1rjnwlyz8cxplsll7w"; depends=[annotate AnnotationDbi Biobase Category graph GSEABase ppiStats ScISI SLGI]; }; +PECA = derive { name="PECA"; version="1.5.1"; sha256="0dzkwjsdhbmripw91wk7fmz83dn88x33q7v4pdi6q17lxfpc5w7y"; depends=[affy genefilter limma preprocessCore]; }; +PGA = derive { name="PGA"; version="0.99.9"; sha256="0p3wbn0yyi74cm4xsgw0n1rgb5nmlhxnq9c62ss9k0yr3jx83y8s"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer stringr VariantAnnotation]; }; +PGSEA = derive { name="PGSEA"; version="1.43.0"; sha256="0bchcpb3ma179akjaf4agsbvx3f8vp73qxrqlq3ls25j9c1acbl5"; depends=[annaffy AnnotationDbi Biobase]; }; +PICS = derive { name="PICS"; version="2.13.0"; sha256="0mc49s5qq2jlc5alba38fyr60p18lad3q6wn48a5khzfkwdbjm9s"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; +PING = derive { name="PING"; version="2.13.0"; sha256="0fghsvanq6r3ndp9vc2zwvfizifw2yl8qjhzv5rl5hkpsb7w9y2d"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; +PLPE = derive { name="PLPE"; version="1.29.0"; sha256="17x48ygk0z5pzlpad950csc5jl46h4rrpifd7l0vni2wkv1wxvy9"; depends=[Biobase LPE MASS]; }; +PREDA = derive { name="PREDA"; version="1.15.0"; sha256="0ls2wlldgmzihfllz4gjhsrr39mjnbp1gpkj4dbr3411cfzd087s"; depends=[annotate Biobase lokern multtest]; }; +PROMISE = derive { name="PROMISE"; version="1.21.0"; sha256="0k3xr0x5xw1jpm8w1hf0pwddf864myn048lg5mba70f6irx9s2qn"; depends=[Biobase GSEABase]; }; +PROPER = derive { name="PROPER"; version="1.1.0"; sha256="1h75zcz3b048760dlhlnvwvwhqfihyl6k3fwqq50b9sh698vbf8z"; depends=[edgeR]; }; +PROcess = derive { name="PROcess"; version="1.45.0"; sha256="1d5kg0r3ddf4bjcmjdd84r92d1cx6xjgk0a303mwsbyp6b7qs06i"; depends=[Icens]; }; +PSEA = derive { name="PSEA"; version="1.3.0"; sha256="13v4q6qxvplvln7ff378chff4z4ppc51wpaq8fz7hxpl0g60cfqm"; depends=[Biobase MASS]; }; +PSICQUIC = derive { name="PSICQUIC"; version="1.7.0"; sha256="0c7v2zm5rrn8ma2kmwpffq2qgipi537fbi1gjhx7yvmnqw9zcjnc"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; +PWMEnrich = derive { name="PWMEnrich"; version="4.5.0"; sha256="134xskadqb7afvz3y4nbbxi5mf02i3cfgb4an2290znvdvsml6sn"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; +PathNet = derive { name="PathNet"; version="1.9.0"; sha256="1dqai2ys5vfhhqqghh1xaxsbcbsqwkjrcrhsm03r3ckpizmbynp5"; depends=[]; }; +Pbase = derive { name="Pbase"; version="0.9.0"; sha256="1j0b2ajlsk42kxakh4vhcd9ias1fxr4cna4h52hrinxi9jml9ywx"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; +PhenStat = derive { name="PhenStat"; version="2.3.0"; sha256="0irasfwks5w5a25zkp0qhasrk5nvahbijsncfbmpimac5cwps1an"; depends=[car logistf MASS nlme nortest]; }; +Polyfit = derive { name="Polyfit"; version="1.3.0"; sha256="0zdd85bshdcf85asq93wbbrj26fa5d6xkmgdyrqg9hawdznj9kip"; depends=[DESeq]; }; +ProCoNA = derive { name="ProCoNA"; version="1.7.0"; sha256="1x2wmlhlizd09v4d7q98cfplqqmxcagi43rl9ibdah04n7k35zpd"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; +ProtGenerics = derive { name="ProtGenerics"; version="1.1.0"; sha256="1l77j3zl78v86jbxpwnyc0a5q66yds79nirlcvan789hxbggr0i4"; depends=[BiocGenerics]; }; +Pviz = derive { name="Pviz"; version="1.3.0"; sha256="0pvmpxw4dpxxs9lrn9nn44rn36r3l09rwlkh5ph054h56nm80xs1"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; +QDNAseq = derive { name="QDNAseq"; version="1.5.0"; sha256="16qp5r8gl81a4arpb6kac387dnc0ng4vilfv1gfqr4rjkpp0gks2"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; }; +QUALIFIER = derive { name="QUALIFIER"; version="1.13.0"; sha256="0vk3xx0dmxadxk1wmcnf9cxv7rr4z8624npkmdbqlzb6mxix7p6d"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; +QuartPAC = derive { name="QuartPAC"; version="1.1.0"; sha256="0w92hggwihp2nia9dzg8yjbfsyrcgwq4kpxh96jb8kkmq6kl2l8p"; depends=[data_table GraphPAC iPAC SpacePAC]; }; +QuasR = derive { name="QuasR"; version="1.9.8"; sha256="0ij9lkqld0pkbf6hq731ygzhj1nf864y6rxzys8f4j7g871lbm1w"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rbowtie Rsamtools S4Vectors ShortRead zlibbioc]; }; +R3CPET = derive { name="R3CPET"; version="1.1.0"; sha256="0vwyrqsihnabzqh5r329v3f5zcg2ik51aakvscpp482z0dm2naqh"; depends=[clues clValid data_table DAVIDQuery GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp reshape2 S4Vectors]; }; +R453Plus1Toolbox = derive { name="R453Plus1Toolbox"; version="1.19.1"; sha256="0fp8hx9igfjaj1dvfxs54r5krhsp1hbmlqs9vac3g6ga51268rir"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; +RBGL = derive { name="RBGL"; version="1.45.1"; sha256="0y90pvl3i8pyzxwssciygcd1c1lb8a0rqhpiqgif56075amm71rl"; depends=[graph]; }; +RBM = derive { name="RBM"; version="1.1.0"; sha256="03q7prkrj8y3k8jrnnbjrkmlyv72cxfa8l042df4wajhcbpa4g4l"; depends=[limma marray]; }; +RBioinf = derive { name="RBioinf"; version="1.29.0"; sha256="1cyd18lz3h9b20g6s9azzv9rv9bachh3qsczz84y8lj4kay3qssx"; depends=[graph]; }; +RCASPAR = derive { name="RCASPAR"; version="1.15.0"; sha256="16v55gkqg4jaa7wp4g1l536jv74nlcwkir6796zd85byz2c6aaxh"; depends=[]; }; +RCyjs = derive { name="RCyjs"; version="1.1.12"; sha256="1gv31yj0ms7llsg2rca96rh77h1qw3hkjbiskzc3zmpycx5m9m8b"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; }; +RCytoscape = derive { name="RCytoscape"; version="1.19.0"; sha256="0yfmlksi7sz0p9nbgjz2cpqwbwyzzxij3zaqmkp3wqfdk89mxgi7"; depends=[BiocGenerics graph]; }; +RDAVIDWebService = derive { name="RDAVIDWebService"; version="1.7.0"; sha256="07hnj7flfacg9j8c6155nw23zjxcb1v4wj4rkfi8xz5clp80v6xh"; depends=[Category ggplot2 GOstats graph RBGL rJava]; }; +RDRToolbox = derive { name="RDRToolbox"; version="1.19.0"; sha256="186cj6xri4prv7y9jvspyql8mkqy3aqs2kd6m5fliqicqbfia2z8"; depends=[MASS rgl]; }; +REDseq = derive { name="REDseq"; version="1.15.0"; sha256="1xgc0xir09n900dgnpg5cibyxqsk0llh3jqqzgghm672rinbx2c6"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome ChIPpeakAnno IRanges multtest]; }; +RGSEA = derive { name="RGSEA"; version="1.3.0"; sha256="1z69ccc6kxmfy1lc4jfnf36b305n8zizzc1sdjxkh43swiivs64k"; depends=[BiocGenerics]; }; +RGalaxy = derive { name="RGalaxy"; version="1.13.0"; sha256="082zmqxqzk0wawrp36ds4sh30zf48pbs3pgsrn5b0j5w3lr1dy1x"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; }; +RIPSeeker = derive { name="RIPSeeker"; version="1.9.2"; sha256="1z0p32fcc8npzs8p3zl7irx5m8vqyfgkwd9kifwjl13ciqlp15j5"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer SummarizedExperiment]; }; +RLMM = derive { name="RLMM"; version="1.31.0"; sha256="01plzmxz5dzvvxzx4wxsqhhypc8fyvkyr96c7xwsaaakah4780nk"; depends=[MASS]; }; +RMassBank = derive { name="RMassBank"; version="1.11.0"; sha256="1df5kfm4gb5kz1z5sq38wddi4njq3y8nzy7fr2dxk1z2j4b1977z"; depends=[mzR rcdk Rcpp RCurl rjson XML yaml]; }; +RNASeqPower = derive { name="RNASeqPower"; version="1.9.0"; sha256="0nn5wq81cm81wjwc43ky597fyq1l4ya36k64bp6k80ri94qx2vzg"; depends=[]; }; +RNAinteract = derive { name="RNAinteract"; version="1.17.0"; sha256="03rz6xyy9f48ns0r9xcxrghikxlna8cx62rwswq2i1xkh7c5lfiy"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; +RNAither = derive { name="RNAither"; version="2.17.0"; sha256="028qf3sj2cms9h6wh4bynxaky8mvlr0axci8yw9bjp4bdlrjland"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; +RNAprobR = derive { name="RNAprobR"; version="1.1.1"; sha256="1n0ra0jb6y01nbdx9qbmkh5w4zy381nzkwcawvdg2bfzva1734mp"; depends=[BiocGenerics Biostrings GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; }; +ROC = derive { name="ROC"; version="1.45.0"; sha256="1vcv5q7ylr2b1fb4vmrc8j4j7s3v5szzpkwblnfkcp2y8d03i9a1"; depends=[]; }; +ROntoTools = derive { name="ROntoTools"; version="1.9.0"; sha256="07l9j4d26hn8d5ma3z19ipy4rrw29k66zb2ib8n3ba24pjm0h8w3"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; +RPA = derive { name="RPA"; version="1.25.0"; sha256="1bzjb0064xdn5zk9y9dpxjdw79i8kkfb29f13balx78nq5xznxh4"; depends=[affy]; }; +RRHO = derive { name="RRHO"; version="1.9.1"; sha256="0lkmg40lwc3v6njalm2a2i3h9cc5iqifqj0ji20mxvk2bgpaj7p6"; depends=[VennDiagram]; }; +RSVSim = derive { name="RSVSim"; version="1.9.1"; sha256="096zfl3glpwa38f2n6cxxcl4a9saf7mfy13g0p2cxq5vfkikab0h"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; +RTCA = derive { name="RTCA"; version="1.21.0"; sha256="1kpfmrjcwmzgih0vib9ckf4c00yax0fbklfi46cwx0avv54gaqs0"; depends=[Biobase gtools RColorBrewer]; }; +RTCGAToolbox = derive { name="RTCGAToolbox"; version="1.99.4"; sha256="1s78mll5907bpwca0zzhp19p328gwxc88wg98fjk710i0lx67gbi"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; }; +RTN = derive { name="RTN"; version="1.7.2"; sha256="0k0xwnk0vgbi86435m5rhv2sxdnzwmhgr85zb8dlffr68dqa66ih"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; }; +RTopper = derive { name="RTopper"; version="1.15.0"; sha256="1bjrrljidnij9zhq6lqsdi6hr35pih2kwwwd5cgmwfff8nfx60kw"; depends=[Biobase limma multtest]; }; +RUVSeq = derive { name="RUVSeq"; version="1.3.0"; sha256="0wi1ydj98l0826sjpm4bfpdklz3735q16vamqzr2b10p3m22xi79"; depends=[EDASeq edgeR MASS]; }; +RUVcorr = derive { name="RUVcorr"; version="1.1.0"; sha256="1pgsfm17gnqwa9sr19f15h0nx1fhyjj07yhmpwr7s6p3v46qdw33"; depends=[BiocParallel corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; +RUVnormalize = derive { name="RUVnormalize"; version="1.3.0"; sha256="1fqk68rpznz9xc7ricipvrk1anppa33h9m5yv65fjwv4q1d05265"; depends=[Biobase]; }; +RWebServices = derive { name="RWebServices"; version="1.33.1"; sha256="1bxp4zj7r1lrxb7r7l32h6b8hdxb1ryf7dxxj0qhwimh7pmxln31"; depends=[RCurl SJava TypeInfo]; }; +RamiGO = derive { name="RamiGO"; version="1.15.0"; sha256="1q9f2ii5b1xway407gzfpzz6vm6an8p13vmgkw7vb9rldxn85hab"; depends=[graph gsubfn igraph png RCurl RCytoscape]; }; +RankProd = derive { name="RankProd"; version="2.41.0"; sha256="05r8mrgnpfkd7yhcch7nrn9jbapfhvi67h0z9a9nlxlp44mz0qq7"; depends=[]; }; +Rariant = derive { name="Rariant"; version="1.5.0"; sha256="1xwy2xrdk1m1mscnql8cp3az1jx639a9w4mb8bz7jf62z4z4npsi"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; +RbcBook1 = derive { name="RbcBook1"; version="1.37.0"; sha256="03q82zjd725w585rgdn9mbx7ddsv1kdxylsndh26csz573j2myhh"; depends=[Biobase graph rpart]; }; +Rbowtie = derive { name="Rbowtie"; version="1.9.0"; sha256="02wc0pzw9vm1mc7y84ic79jjdi1mh77v8h4gk2pl117pdkgg7nl7"; depends=[]; }; +Rcade = derive { name="Rcade"; version="1.11.0"; sha256="0dqhir9nkkhga3zll4jv9nc4k2kaggxkks2whfw581k9akj1v7x1"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; }; +Rchemcpp = derive { name="Rchemcpp"; version="2.7.0"; sha256="0px77l9h4f0kximv7almkyx9lfc67cdvms25mfry5hyv2v2d3qb8"; depends=[ChemmineR Rcpp]; }; +RchyOptimyx = derive { name="RchyOptimyx"; version="2.9.0"; sha256="1l84zzd4xpz409gl3d3j5ssddgx3i6ik5hqsdggyvnvf1nb2yavn"; depends=[flowType graph Rgraphviz sfsmisc]; }; +Rcpi = derive { name="Rcpi"; version="1.5.0"; sha256="1ap4i41iy9r6xl0dhlry6yz28g5blb057vvddx6ysphaq9gwx6rp"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; +Rdisop = derive { name="Rdisop"; version="1.29.0"; sha256="0j40i96k6q94c3238gl3z9kp9dxv00133m9s4zx28z17ayz00h69"; depends=[Rcpp RcppClassic]; }; +ReQON = derive { name="ReQON"; version="1.15.1"; sha256="147fywvb9f9gjg3ij3sh753fs6mkr9b3f1c9j4gws1hmc6ryyn3m"; depends=[rJava Rsamtools seqbias]; }; +ReactomePA = derive { name="ReactomePA"; version="1.13.2"; sha256="0wll3hgf161jyj2pzbybncvikw6idph672s3n048a1fa7nn8abyg"; depends=[AnnotationDbi DOSE graphite igraph]; }; +ReadqPCR = derive { name="ReadqPCR"; version="1.15.0"; sha256="063swfh992gmibvr9ffsh65i57fdl651gpc39b2y6k9dp2rx8is7"; depends=[affy Biobase]; }; +RedeR = derive { name="RedeR"; version="1.17.0"; sha256="13fmv76jrzxsa1ykzl85zwj0zb3aycyvc5s3h60vlgawfw66z90h"; depends=[igraph RCurl XML]; }; +RefNet = derive { name="RefNet"; version="1.5.0"; sha256="0dzkvrpphbajpcwc3gdqi8lmwfg8a3rljhdnwswvbjg2vraj48s2"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; +RefPlus = derive { name="RefPlus"; version="1.39.0"; sha256="049nv5jhcl26vgvimgd6s7832vd6q2rn7h6pmc8wd6844vv7sx2n"; depends=[affy affyPLM Biobase preprocessCore]; }; +Repitools = derive { name="Repitools"; version="1.15.1"; sha256="00jjhxib1whn6dv7cilvdglppkqlafm5wvsg89r2hyrh8l6f2a2b"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; +ReportingTools = derive { name="ReportingTools"; version="2.9.1"; sha256="05p005092xm2qjz9b60562q69avphgrr8x7iac24pvnbywn1j7q2"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma R_utils XML]; }; +Rgraphviz = derive { name="Rgraphviz"; version="2.13.0"; sha256="08apr3v2h5jwah96c2596ggz7xaz41k5zywcqsjm6g8xhd3hs522"; depends=[graph]; }; +Rhtslib = derive { name="Rhtslib"; version="1.1.8"; sha256="1n6mimlkyaxcfwfr4hclmch3h14qaffakkd899p9fwlf1d60j9xw"; depends=[zlibbioc]; }; +Ringo = derive { name="Ringo"; version="1.33.0"; sha256="12qh3aayy317pzb137ds9vqrrwn93c4l4fdcl6yyp8p4fqpki03j"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; +Risa = derive { name="Risa"; version="1.11.0"; sha256="1rgyh3yv4ii0xw6ycm0g9b0y6c9nqdq4k8lidmifk0gx835lw7vf"; depends=[affy Biobase biocViews Rcpp xcms]; }; +Rmagpie = derive { name="Rmagpie"; version="1.25.0"; sha256="13mb9aaqmwx1ad4mk0fhxqfql8pjpyaiibip7jawiyji7ghp9iw7"; depends=[Biobase e1071 kernlab pamr]; }; +RmiR = derive { name="RmiR"; version="1.25.0"; sha256="1xc19w8la239ia793qpnpx2h0aavwhidrjf4i87jry2j29npjfzz"; depends=[DBI RSVGTipsDevice]; }; +RnBeads = derive { name="RnBeads"; version="1.1.1"; sha256="1cz26pivf2w57ha03c49nsqnvr93s8s4xqdy2ccdc3rgffvv191g"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; }; +RnaSeqSampleSize = derive { name="RnaSeqSampleSize"; version="1.1.0"; sha256="0q2w1yd5p9k3pls6ki8yci3r2v4rxi3iy4zk5mafmr7ip0q1rwpp"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp]; }; +Rnits = derive { name="Rnits"; version="1.3.0"; sha256="0hxll8hlv5nc6vijznhzmvbjh1hxmfy9shm2g8al291yi0gfdmk3"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; +Roleswitch = derive { name="Roleswitch"; version="1.7.0"; sha256="01b21yyg0d2v10abcbw08zhswh9nb7wj7s3x5kcaaas7671f06ha"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; +Rolexa = derive { name="Rolexa"; version="1.25.0"; sha256="1qrf7byimw9s5jp15zmwqk95x34r3yx2npr46gwf1zih06n7kc05"; depends=[Biostrings IRanges mclust ShortRead]; }; +RpsiXML = derive { name="RpsiXML"; version="2.11.0"; sha256="0rvma7vynfh5sjhqnbpagilq54dh0wrvvb3jzykwmrak0dbyk7zh"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; +Rqc = derive { name="Rqc"; version="1.3.0"; sha256="06x637d83qv0g0b833r02andj13ipn7dg9xp3lz1rfv5rc1v9m6v"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings ggplot2 IRanges knitr markdown plyr reshape2 S4Vectors ShortRead]; }; +Rsamtools = derive { name="Rsamtools"; version="1.21.8"; sha256="0hv36vmhv37mvn4mqyydyjm3gsfmnizw37jicpb9m2zgc6zgvzha"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; +Rsubread = derive { name="Rsubread"; version="1.19.0"; sha256="1vlv6h84bxl8986vqc0j47jgmyx8zn2fawj2w6r6fbblq3n2gnm0"; depends=[]; }; +Rtreemix = derive { name="Rtreemix"; version="1.31.0"; sha256="1z08y8qhc3sv4pwvji4pks46hxpcpwb9yx8y0927bc96a8mqgax4"; depends=[Biobase graph Hmisc]; }; +S4Vectors = derive { name="S4Vectors"; version="0.7.5"; sha256="0fayn794gwndk7rnawmks1armc1znfgllnsdk36fa19fg9g3245r"; depends=[BiocGenerics]; }; +SAGx = derive { name="SAGx"; version="1.43.0"; sha256="111pgl7rzmscgadkbivwa736gpyw1z7zkcj648zq3jhqix569dvd"; depends=[Biobase multtest]; }; +SANTA = derive { name="SANTA"; version="2.5.0"; sha256="1xrgjhja7idfby99ln90q1h6qrvsy1zbxksjccrv25qqmgaiw0ql"; depends=[igraph Matrix snow stringr]; }; +SBMLR = derive { name="SBMLR"; version="1.65.0"; sha256="1nmw5c32ka6l12cid54mc4diahjhmyg6fngsd646v70rbzgffn7q"; depends=[deSolve XML]; }; +SCAN_UPC = derive { name="SCAN.UPC"; version="2.11.0"; sha256="1gwjd78qfaqv6xh4ys6rr29b82wc8qxk7ysfjcl06j6n0qk1v4s6"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; +SELEX = derive { name="SELEX"; version="1.1.0"; sha256="13v2aqphpblwslbnm9yk9lfg31vrc3lz9ds4m8j7584iszmlgnar"; depends=[Biostrings rJava]; }; +SEPA = derive { name="SEPA"; version="0.99.0"; sha256="1mc44amd39x1dvl0kamhbsn2cplg7h5j5v5y2lv1gminfl4xs0sw"; depends=[ggplot2 reshape2 segmented shiny topGO]; }; +SGSeq = derive { name="SGSeq"; version="1.3.7"; sha256="0cr9z0yjbn7n3p4442vjsdr6a0g0nsw6cp0mp7g92vna8lhff4n0"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; +SIM = derive { name="SIM"; version="1.39.0"; sha256="1r08h5hkciycv4lh998vm742flim07plysgjvrq9dp4c5q4qrzr5"; depends=[globaltest quantreg quantsmooth]; }; +SIMAT = derive { name="SIMAT"; version="1.1.0"; sha256="1w9pw94p4fiq54vjh132b4j0gj5qq06y0b7crdbhv9ihn6780lpg"; depends=[ggplot2 mzR Rcpp reshape2]; }; +SJava = derive { name="SJava"; version="0.95.1"; sha256="1cl0qybi71srf1ggawxdy128kz8crn8if4yi8c2m6w9ppah9m763"; depends=[]; }; +SLGI = derive { name="SLGI"; version="1.29.0"; sha256="0jhi3nmgnqf8qix90kpz8gqibqvyp02ca07aka7npqls24d3i96f"; depends=[AnnotationDbi Biobase BiocGenerics lattice ScISI]; }; +SLqPCR = derive { name="SLqPCR"; version="1.35.0"; sha256="1p35xgwf3i8ksznz1gi3bddj0816hdljamcb7smdrq0md5fqmpzb"; depends=[]; }; +SMAP = derive { name="SMAP"; version="1.33.0"; sha256="0znl289fclws2vnqgpjnrl8b0s5q4cna3ps3il5783vr64ir88cg"; depends=[]; }; +SNAGEE = derive { name="SNAGEE"; version="1.9.0"; sha256="0sn5b8ah9idbz63y1rjx8brz3h58zvh2sk59l4i48nvrm38g169r"; depends=[]; }; +SNPRelate = derive { name="SNPRelate"; version="1.3.4"; sha256="1m10sa7zlsg8b77xi663jz315fi267g2d59d69a7mzcznxz7xi1z"; depends=[gdsfmt]; }; +SNPchip = derive { name="SNPchip"; version="2.15.2"; sha256="1px5ifdsly1z8iwd22vj2xb4pk5jhsa3h2z31scw37b0v4daks50"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; }; +SPEM = derive { name="SPEM"; version="1.9.0"; sha256="09klaxlz1ff77jhjsr95g3s4b5m285zf3fl9w4mv5pc8r1viqplf"; depends=[Biobase Rsolnp]; }; +SPIA = derive { name="SPIA"; version="2.21.0"; sha256="0v8m9wfl2kqzzl3k0v7lr7g33ymdnmqi9r2fqyb42mggpq5pwxlm"; depends=[KEGGgraph]; }; +SQUADD = derive { name="SQUADD"; version="1.19.0"; sha256="0xss3vhn6471z44gd44i8j5bni8471nb1sq3cx99f2gyk817nxp8"; depends=[RColorBrewer]; }; +SRAdb = derive { name="SRAdb"; version="1.23.0"; sha256="042y06ds1jdj26jzi51wxb6mlmlr751jyf7ggjaq7zrz267dmj76"; depends=[GEOquery graph RCurl RSQLite]; }; +SSPA = derive { name="SSPA"; version="2.9.0"; sha256="1kkvj3s2l6zzvv6pybx38qrnm3i5dxckx2fpc4snlx7km2w175xz"; depends=[lattice limma qvalue]; }; +STAN = derive { name="STAN"; version="1.3.0"; sha256="02qg79aa0j2ns1xswdirgbpwb0dlghd0lbdxgnpmy225wgb7nak6"; depends=[Rsolnp]; }; +STATegRa = derive { name="STATegRa"; version="1.3.1"; sha256="0kfwi5qimg4myx5x0gjwrkhz8cxh2hz1mvxla8yn8v8fkb3ryshj"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; +STRINGdb = derive { name="STRINGdb"; version="1.9.0"; sha256="0nsl13gb0kjppd4gnpg35ww1dy0gnql7ki6902pxam6pz2m0sp26"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; +SVM2CRM = derive { name="SVM2CRM"; version="1.1.0"; sha256="0k3mg9b8i406ssvkzacz60qk000bnd1d5bmcqzc3yrh3w9qv567q"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash verification zoo]; }; +SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.2"; sha256="1bm8b6myyafya99af6w6ayngkm8dl85ldma0lf6v0gysmn9dlqkk"; depends=[]; }; +ScISI = derive { name="ScISI"; version="1.41.0"; sha256="05snqj8qphcmnkrmv42p6zs92dmi09sd06abn5ll5234my5d0vvn"; depends=[annotate AnnotationDbi apComplex RpsiXML]; }; +SemDist = derive { name="SemDist"; version="1.3.0"; sha256="0dvnp3d2s7bc4jv2vm8jikyac2cd23hx7r480g2lkcaic99wbl0s"; depends=[annotate AnnotationDbi]; }; +SeqArray = derive { name="SeqArray"; version="1.9.3"; sha256="062zl6igsf12k7k9c5j0sya3mq57y0vp1giqcj3czv569ipnc93s"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; }; +SeqGSEA = derive { name="SeqGSEA"; version="1.9.0"; sha256="0znabm84qgzf9m4dk64jppn3s5vzz1sjvrdlr7s6jls8jwi8kqqi"; depends=[Biobase biomaRt DESeq doParallel]; }; +SeqVarTools = derive { name="SeqVarTools"; version="1.7.0"; sha256="0nwhz7fpfrbbvcl08g8wflhz8iv660grfq2dq0l5bgqv04x3a19h"; depends=[gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray VariantAnnotation]; }; +ShortRead = derive { name="ShortRead"; version="1.27.4"; sha256="1wkpl67rbiwdy5s4hr84bgc4qj4i94d3kkgg527c2xdg7pwd2vx9"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; +SigCheck = derive { name="SigCheck"; version="2.1.0"; sha256="012n75gmsifvymbk20pjdv9g8mzmm9bzk98l089ymy5hbddja86b"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; +SigFuge = derive { name="SigFuge"; version="1.7.0"; sha256="1b966n3rl4xs3q1vjgkxxfravqr02rdgwyzvr469y757qdqi1day"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; +SimBindProfiles = derive { name="SimBindProfiles"; version="1.7.0"; sha256="04m7h5zil05sg9yfgjjzm1p65302fp50vxf8y1jafp1nwqialxwh"; depends=[Biobase limma mclust Ringo]; }; +SomatiCA = derive { name="SomatiCA"; version="1.13.0"; sha256="06b3mz199qm2ynal8iq4kp8rv40wbc5zipzwm22nccf97krxl9a4"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; }; +SomaticSignatures = derive { name="SomaticSignatures"; version="2.5.4"; sha256="1kr4z1b9b5a8gb1m9vfk9bxhinh5ccba2mrwnq3cqhb7c3slbjs3"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; +SpacePAC = derive { name="SpacePAC"; version="1.7.0"; sha256="1ay5hlbm2x9g5mjrq5qksgrrr84vwfk49g9qb2sc9wyc46n5af6k"; depends=[iPAC]; }; +SpeCond = derive { name="SpeCond"; version="1.23.0"; sha256="0nbbqazxql9mc5idvrcycrm9fkrnm2vi9zrad3awhc378ippdk8k"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; +SplicingGraphs = derive { name="SplicingGraphs"; version="1.9.1"; sha256="1s3kvaxrrvfndp4imavj0r9zw0rg37cn9xwxhi5zpfd7a784z1xk"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; +Starr = derive { name="Starr"; version="1.25.0"; sha256="0553rfkhzzlszhmfcrl7r7n2jmvvz9rqj91x131x3jsmb1qavw57"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; +Streamer = derive { name="Streamer"; version="1.15.2"; sha256="0mah1sq797ihy82mvb6vyppggap3nxcpwbnswxf1rw0jxhnjnmll"; depends=[BiocGenerics graph RBGL]; }; +SummarizedExperiment = derive { name="SummarizedExperiment"; version="0.1.5"; sha256="1n29sssjkhaj2rs9qd9g8mq25a63rs04f1kn9hjy67f10i5h1l1n"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; +Sushi = derive { name="Sushi"; version="1.6.1"; sha256="0g1fk0xrn584l49r73crj0bc5z2y6rdzyf54d221r7k119njp3dw"; depends=[biomaRt zoo]; }; +SwimR = derive { name="SwimR"; version="1.7.0"; sha256="07kh24m9d1q3swj3srjybj6lq68s89750fbvlg449px4aq23yrq0"; depends=[gplots heatmap_plus R2HTML signal]; }; +TCC = derive { name="TCC"; version="1.9.0"; sha256="1bihqfvrq3sjs38m2a60swxqcxmgabb1lmsnfrb669imiqc7ramj"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; +TDARACNE = derive { name="TDARACNE"; version="1.19.0"; sha256="0nwg355n0qs781801pmmwfwp66sa2ci7g6gfdh4669067j4qbqhb"; depends=[Biobase GenKern Rgraphviz]; }; +TEQC = derive { name="TEQC"; version="3.9.0"; sha256="0dkmh901jkf529jcshvr79jmkvw0824r4dxgp6l6vgv9j5c6nf25"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; +TFBSTools = derive { name="TFBSTools"; version="1.7.0"; sha256="1c38n6xlm4cfrhh9qih0d8xh3d7r7w797fjcbmhsr2zhd7qssrqb"; depends=[BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XVector]; }; +TIN = derive { name="TIN"; version="1.1.0"; sha256="0npf3gwh2izvsa5j0zjy1gkm69nrxhcjlm2ha621fc1gz7lx1i2y"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; +TPP = derive { name="TPP"; version="1.1.0"; sha256="06xm73jx4f2pldi7yifvx7zh62zmigidnfd7klpp0jpfxx3xjw61"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr reshape2 VennDiagram VGAM]; }; +TRONCO = derive { name="TRONCO"; version="1.1.0"; sha256="18zmn1cxysar3a19n9i47r2gda5r5jvz0bk209wh6kqlhs001q9v"; depends=[graph lattice Rgraphviz]; }; +TSCAN = derive { name="TSCAN"; version="1.5.0"; sha256="1hkmfn9svbgpvxpszfdxjc23qq8x60prsbrgv7z5n3na4sl7y5z5"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; +TSSi = derive { name="TSSi"; version="1.15.0"; sha256="0475zw1s34ayiz0v9i770rmha4rx9i3zzkjvyskgvsdpgsq9wl4j"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; +TargetScore = derive { name="TargetScore"; version="1.7.0"; sha256="0lkkxzi3fi0dxika09fkbakq54c2sjw4g4y9bafcy3f225fac8x8"; depends=[Matrix pracma]; }; +TargetSearch = derive { name="TargetSearch"; version="1.25.0"; sha256="071p06gb1rn6sdhdpi7g05rflp6jgs0cdff13gj8hr5jykyw5ix7"; depends=[mzR]; }; +TitanCNA = derive { name="TitanCNA"; version="1.7.1"; sha256="0a64bqgyn18qdvgzmc6kqr6c16jlqyz0vah0fm2qwdjz3zmjd081"; depends=[foreach GenomeInfoDb IRanges Rsamtools]; }; +ToPASeq = derive { name="ToPASeq"; version="1.3.0"; sha256="1m6mh30fpf9mmgg2wsv08qvizw0cpa6dz5abspgbw3q0vaskm2db"; depends=[Biobase clipper DESeq DESeq2 edgeR fields GenomicRanges graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz TeachingDemos]; }; +TransView = derive { name="TransView"; version="1.13.0"; sha256="14fanxl8lqam3492c5sbvhsjwbayrx7dcp5wpsbqrcvbssmfa3cx"; depends=[GenomicRanges gplots IRanges Rsamtools zlibbioc]; }; +TurboNorm = derive { name="TurboNorm"; version="1.17.0"; sha256="1f2frh2xnngzpl2q2jxiild98qgnd60c0pz31aisk013nj3jdadq"; depends=[affy convert lattice limma marray]; }; +TypeInfo = derive { name="TypeInfo"; version="1.35.0"; sha256="0rxwfaqg8sg70hiq8frm4pjhs8a17n0rgjra346bsi8cm4a2vyhz"; depends=[]; }; +UNDO = derive { name="UNDO"; version="1.11.0"; sha256="173cdpp0gipwplxdf7ynxqnv8fqfkbyx7xmr5cx396zi8gpq3am4"; depends=[Biobase BiocGenerics boot MASS nnls]; }; +UniProt_ws = derive { name="UniProt.ws"; version="2.9.1"; sha256="0w5rgr5a5mmhrgvgdyxvglflz1z3yl8i8kfrhcavl1apkqv2v0p0"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; }; +VanillaICE = derive { name="VanillaICE"; version="1.31.2"; sha256="0szd11zz5nvax9awwh1v3qdg01x7s87a2smacz96fya9acjiclhb"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; +VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.13"; sha256="1fp09wnvwh981bwysfnvak1qz0ybidz6qim73w1wg32dn2d42p5a"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; +VariantFiltering = derive { name="VariantFiltering"; version="1.5.14"; sha256="0r972lvyjcq0wxxnpgd9ym0b7kfjl8nyjkkci2z5gnilpq9ds5fw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; }; +VariantTools = derive { name="VariantTools"; version="1.11.0"; sha256="1yyx9l6q3v4igm2ppnrsj9c7p4p0zpkqwjyf9d7b7rqvrk9yjyrv"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; +Vega = derive { name="Vega"; version="1.17.0"; sha256="1c39112czlw9hgh9gmkwxhhz9kwki48k8lsfmy3hkzxqpxx61h01"; depends=[]; }; +VegaMC = derive { name="VegaMC"; version="3.7.0"; sha256="046wly5sn4vwk3h4bcick8q5dpjrfjq393rqjl8y4v24iqynlyqd"; depends=[Biobase biomaRt genoset]; }; +XDE = derive { name="XDE"; version="2.15.0"; sha256="17i8zxb6q4wpsa8lymcnilmr39ip1a54h6rqyl3m7qa8xwb0gv50"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; }; +XVector = derive { name="XVector"; version="0.9.1"; sha256="0l5l45i7sx1j51s3wkab207qwbk77i8iazd26isf0yp3rsb84a4c"; depends=[BiocGenerics IRanges S4Vectors]; }; +a4 = derive { name="a4"; version="1.17.0"; sha256="0pn0gm4xkngz72i92h58d0xbpcx04938x4vm0mqsilrjapchripj"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; +a4Base = derive { name="a4Base"; version="1.17.0"; sha256="13cxavpf8x7y7n6aszdibpq225raj15klnidk59kpxn4vmpyqskl"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; +a4Classif = derive { name="a4Classif"; version="1.17.0"; sha256="1inascpwzzshy1halmsalz7nk9m63rbpg6xh0wxydaflm8wbxmr1"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; +a4Core = derive { name="a4Core"; version="1.17.0"; sha256="07fc0kg4l44mbps49bdivsxdf5581mdvgdl2551a24vayb6kg050"; depends=[Biobase glmnet]; }; +a4Preproc = derive { name="a4Preproc"; version="1.17.0"; sha256="1xb7jqvb4x5s9a5gbn8b7z69cwhsbmln5s0lymxcgmfb73sjczfw"; depends=[AnnotationDbi]; }; +a4Reporting = derive { name="a4Reporting"; version="1.17.0"; sha256="1fpdkw048gv9031rz7zkkx55i5qw5b03zdhykxkcczb1f51znby2"; depends=[annaffy xtable]; }; +aCGH = derive { name="aCGH"; version="1.47.0"; sha256="095arlryay4gdr6kva7vf9lcby60pyx5bs4vcx586zgwskzpb2ln"; depends=[Biobase cluster multtest survival]; }; +acde = derive { name="acde"; version="0.99.5"; sha256="1bbsfr7a2sivb6dpn06hwj0i95wdlfxzba4a36pakx7nzn6nv76p"; depends=[boot]; }; +adSplit = derive { name="adSplit"; version="1.39.0"; sha256="1jprbqwhksyp9jf05r5dbfzgn30xm16shqsf8yi9b3nr7z2swvwm"; depends=[AnnotationDbi Biobase cluster multtest]; }; +affxparser = derive { name="affxparser"; version="1.41.4"; sha256="11l1d74qvsaknnfa4wwp1jb0v17hwbz5yc8fnvg5qqmdwnblrdjc"; depends=[]; }; +affy = derive { name="affy"; version="1.47.1"; sha256="1c9ggyqhj65mj0nq9xsqfmzp4a5705qj67swjpk5bmqajxr390a3"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; +affyContam = derive { name="affyContam"; version="1.27.0"; sha256="1hd9kchhdjcnkxlf6kcc59jb5a9v67671shvzprraa1lg4800j5x"; depends=[affy Biobase]; }; +affyILM = derive { name="affyILM"; version="1.21.0"; sha256="1gvagg83p4vxp6q72s7camcg5lhxdfy7rmm3a2p2n29267xvcz5x"; depends=[affxparser affy Biobase gcrma]; }; +affyPLM = derive { name="affyPLM"; version="1.45.0"; sha256="1443xrhphkmrjah5lgnq00zqbillngwz9r50xk1kg9br4fxm3adv"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; +affyPara = derive { name="affyPara"; version="1.29.0"; sha256="06382vyfjrng72hhmdivbhz02l27g18ll867clj8avi5r66zlj4n"; depends=[affy affyio aplpack snow vsn]; }; +affyQCReport = derive { name="affyQCReport"; version="1.47.0"; sha256="09f3pbacsrjs5bv1bv3dz7jmd849rnix6pqlkszr507s6by5i47y"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; +affycomp = derive { name="affycomp"; version="1.45.0"; sha256="0wwgijr7h2hbv2l0w5p509f70yy873w8kahs7nnhrgl4kzbjiymc"; depends=[Biobase]; }; +affycoretools = derive { name="affycoretools"; version="1.41.9"; sha256="16zdm1idmssg9jp86kkfc2h2dhjz2rl6qnrbybfbkiiklj2gagq7"; depends=[affy AnnotationDbi Biobase gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools xtable]; }; +affyio = derive { name="affyio"; version="1.37.0"; sha256="0p6wgrl8xag85y5vadfxdvvr430d7sa4wh2fw3ijyi3hr83sdr4z"; depends=[zlibbioc]; }; +affylmGUI = derive { name="affylmGUI"; version="1.43.0"; sha256="04np48b2v04w77vhpacdx8790i8jb58rw7da76qvahiqja857vlq"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; +affypdnn = derive { name="affypdnn"; version="1.43.0"; sha256="01myf9dxzgc2jgdswphinz7ap7bdaqnw0gcfk32sxbykr4g4zyiy"; depends=[affy]; }; +agilp = derive { name="agilp"; version="3.1.0"; sha256="13jnq7v0qfyllbldx2abnia0rg40yxxgkq4i1whsy5qnk1fp0n77"; depends=[]; }; +alsace = derive { name="alsace"; version="1.5.0"; sha256="17ah7dl02w6qysfbs92h4c3wxfb6f1m6vz6yl07s0zd86k12g4nm"; depends=[ALS ptw]; }; +altcdfenvs = derive { name="altcdfenvs"; version="2.31.0"; sha256="05gr6j1w1y289p239138qv4ap4rciwpbw2g2cdm63xzlnryanr1m"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv]; }; +ampliQueso = derive { name="ampliQueso"; version="1.7.0"; sha256="1bk0svxg7n6b610d5czkk1mgkrgdsjlghbj38g4hxxw3vciaxhkk"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; +annaffy = derive { name="annaffy"; version="1.41.1"; sha256="1rqp0lrhahkimnhifpipf2vw0lhprdx9slz3s4bwylvn0k5balcm"; depends=[AnnotationDbi Biobase]; }; +annmap = derive { name="annmap"; version="1.11.0"; sha256="0s0ifbwra3zczw9h0nqcs88rb3h74ry1gap1bvqvcxqirdwq9nw4"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; +annotate = derive { name="annotate"; version="1.47.0"; sha256="06nrzkl9g26rrnqvakwkn2yinvgka02a5iivhi9kgjk4g5plcmkw"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; }; +annotationTools = derive { name="annotationTools"; version="1.43.0"; sha256="1dqs8f4p1ks03q0lfwm3hs116ahks39hk17knkqs492zcqr83qay"; depends=[Biobase]; }; +anota = derive { name="anota"; version="1.17.0"; sha256="0grdmpdg03wqjs6rk558nvl8vvdi6my0jv06f3h364pk44hrijdn"; depends=[multtest qvalue]; }; +antiProfiles = derive { name="antiProfiles"; version="1.9.0"; sha256="0jyrwk7h3qrka950yqhblavf40yjbyarimrf8d7zbq1kd3licfbf"; depends=[matrixStats]; }; +apComplex = derive { name="apComplex"; version="2.35.0"; sha256="0h9vvz62fbnqqw2qz4kpcr0s40yj7swy0plkdaq51q04p41z016r"; depends=[graph RBGL Rgraphviz]; }; +aroma_light = derive { name="aroma.light"; version="2.5.1"; sha256="0d48c2860gg2qpmqx5i0lzh2n8chb4jdq78f169vlynx49ix3kq7"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; +arrayMvout = derive { name="arrayMvout"; version="1.27.0"; sha256="1czqsd34d8rb9h4vwp2m6ficvi41gbdgrilgbl0fb01vlp79qq0k"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; +arrayQuality = derive { name="arrayQuality"; version="1.47.0"; sha256="0f3wvvb1a78hzlxansjfh065vbyh2qk9vz3jna6294zc7k4r7wfb"; depends=[gridBase hexbin limma marray RColorBrewer]; }; +arrayQualityMetrics = derive { name="arrayQualityMetrics"; version="3.25.0"; sha256="0h90j2fj87bvwj1cjy7qq5mnfy4jabqa8ijq23gp3p51qwyh84zr"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; +attract = derive { name="attract"; version="1.21.0"; sha256="0kl2kgxvm9ix2lwcwilmzcjhxbhx99afn6g6608aq26649q3k2sz"; depends=[AnnotationDbi Biobase cluster GOstats limma]; }; +ballgown = derive { name="ballgown"; version="2.1.0"; sha256="168bpcawi5g6vhwg16585qd6g1pp3kd4baldcd1yk9bkccxaj8xx"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; +bamsignals = derive { name="bamsignals"; version="1.1.0"; sha256="1ga4swlqmjg4xnmkk16h0qjh3dpz7n0pra2233j4cz78cn8zvj3p"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; +baySeq = derive { name="baySeq"; version="2.3.0"; sha256="1l0is5dcwip7babll7mpsahhj69v1j1d7caq64ak6qhb477pmak5"; depends=[abind GenomicRanges perm]; }; +beadarray = derive { name="beadarray"; version="2.19.0"; sha256="0izc7i65j60k20a86hblkfq6vq2n855vi8qrn42p3gx27s28a20v"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; +beadarraySNP = derive { name="beadarraySNP"; version="1.35.0"; sha256="0g6ba4iynfgrm647d5vx6wk9pijg62bdvvz1afz9dimqvjlwybhc"; depends=[Biobase quantsmooth]; }; +betr = derive { name="betr"; version="1.25.0"; sha256="0jd7r069jlfp5fj51xw8k6jpxq5kb364xi9331l06hwijp3msrk6"; depends=[Biobase limma mvtnorm]; }; +bgafun = derive { name="bgafun"; version="1.31.0"; sha256="18wk42h1i06j3swlsac9vnkc7riimk7qap59lygji1p3zvy1nkpx"; depends=[ade4 made4 seqinr]; }; +bgx = derive { name="bgx"; version="1.35.0"; sha256="1cawfanrxq82b24ny050hv4p607k2zhfxllgl8j1j9qm9n4yk4yk"; depends=[affy Biobase gcrma]; }; +bigmemoryExtras = derive { name="bigmemoryExtras"; version="1.13.2"; sha256="0qmrpm4bir0si5xd5v8ih6wnwfprwp4q9hcxbylf1721v9m9wpwv"; depends=[bigmemory Biobase]; }; +bioDist = derive { name="bioDist"; version="1.41.0"; sha256="14a18ky9x36fa8yx3kry23c0vfazxy0lg0j2zkdnr1irngc9wnw5"; depends=[Biobase KernSmooth]; }; +bioassayR = derive { name="bioassayR"; version="1.7.3"; sha256="1m6b2l0y7acpwpb6jjmmhsxdjrrhqnas7c8a2xq50x88l9ks4v68"; depends=[BiocGenerics DBI Matrix rjson RSQLite XML]; }; +biocGraph = derive { name="biocGraph"; version="1.31.0"; sha256="069n4867pkygrsgfjp6arnnmcvlij03r1a2kbs9jgnpx4knck09i"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; +biocViews = derive { name="biocViews"; version="1.37.7"; sha256="0d7gwbb9x23gr2h0pl72hzsm2jfj7s3dzbl66gmk6dc0bs7ibw42"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; }; +biomaRt = derive { name="biomaRt"; version="2.25.1"; sha256="1dk55qrfxyzgnjk90qy6mfgw04fpwfy4jkhwbmnpnky826mg7bwb"; depends=[AnnotationDbi RCurl XML]; }; +biomvRCNS = derive { name="biomvRCNS"; version="1.9.1"; sha256="0ni7ncip0vx1ipyrgd2kkasw6cmxbr2ha2dsqb0bizyyf2981rnh"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; +biosvd = derive { name="biosvd"; version="2.5.0"; sha256="0xnc3vpbj5p14w2fwql8vpz9lyvivq3kjmwsr62abn418ampa941"; depends=[Biobase BiocGenerics NMF]; }; +biovizBase = derive { name="biovizBase"; version="1.17.1"; sha256="0fffqm8z7x849rd0k7vhpbzwyrx5s0w75iz78627rglczjff6ddp"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; +birta = derive { name="birta"; version="1.13.0"; sha256="01lrwg4naks85gcrlg3sk3pr328j40b1ji4m4bn3s74rqn6sb52h"; depends=[Biobase limma MASS]; }; +birte = derive { name="birte"; version="1.3.0"; sha256="0azkl9x2hk826sdpw96ls868jf83yf1v79inyjg7xsilal2slqgf"; depends=[Biobase limma MASS nem Rcpp RcppArmadillo ridge]; }; +blima = derive { name="blima"; version="1.3.0"; sha256="1i7njg1lw76717irmfbpy9pmv8hy7nzyini2wm6625cafizp5xq8"; depends=[beadarray Biobase BiocGenerics]; }; +bridge = derive { name="bridge"; version="1.33.0"; sha256="06iz67amv80az14s8yim25jfsgbxhxbfifbqazsc78ip9gd7lfyv"; depends=[rama]; }; +bsseq = derive { name="bsseq"; version="1.5.3"; sha256="1rdblq7xh5hbghr66iamnpc24yiqrnqfn7pr835m6wag6waxdc3i"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats S4Vectors scales SummarizedExperiment]; }; +bumphunter = derive { name="bumphunter"; version="1.9.1"; sha256="0phq9dhrj8fa253a64vwfp75j85vp9142g5gmfy1g1n861xy8r26"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; +caOmicsV = derive { name="caOmicsV"; version="0.99.2"; sha256="0y96f64m0liv53vbby866v1ga5nml1506pp6ff4ax7dbg0niiwwn"; depends=[bc3net igraph]; }; +canceR = derive { name="canceR"; version="1.1.2"; sha256="07wikalgmf3vw2dzmri1ia80hfman53mynsk40y549qn8hjija1k"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; +cancerclass = derive { name="cancerclass"; version="1.13.0"; sha256="066v9dz49ap0db31jrdlx2zbv8l3bwd75sf9gqa1dw3g8m9zq7hg"; depends=[binom Biobase]; }; +casper = derive { name="casper"; version="2.3.1"; sha256="12nz9ypg685c1bly3fp9x76cilh6imlw4hqdmd7sbp2d0z89dcgf"; depends=[Biobase BiocGenerics EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; +categoryCompare = derive { name="categoryCompare"; version="1.13.0"; sha256="08r5payxn40xdpaph6zind8miqlqdhnmka9jcijj396rbbhvb480"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; }; +ccrepe = derive { name="ccrepe"; version="1.5.0"; sha256="1cza3f27216aqlhmc3qfdxvjwywzhwklfg27ls37fbzv6a40wy8j"; depends=[infotheo]; }; +cellGrowth = derive { name="cellGrowth"; version="1.13.0"; sha256="1x7fxjhddv46wxv7qy1j8vzjna07r0drizpmsjakjw21mr4r3w06"; depends=[lattice locfit]; }; +cellHTS = derive { name="cellHTS"; version="1.39.1"; sha256="1xvnk8s7grhmjdh369zp6w6fasgrysbgnfyshgckaghvnlb5c962"; depends=[genefilter prada RColorBrewer]; }; +cellHTS2 = derive { name="cellHTS2"; version="2.33.0"; sha256="0gmf9xly6b9xskk6700m5jpc61hx4p6nbc5m47xmircwnn6lcvxi"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; +cghMCR = derive { name="cghMCR"; version="1.27.0"; sha256="1chyl52628gnxnsky2d0xbxsj7x3jizc1h914cip9i90akir6srk"; depends=[BiocGenerics CNTools DNAcopy limma]; }; +charm = derive { name="charm"; version="2.15.0"; sha256="14mrkgzfhljsmf4saw64nkid583mx0wxwjfq16gzm5j8q5d2qy88"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; +chimera = derive { name="chimera"; version="1.11.0"; sha256="12341saahq2b3bwiqd2hpmykvsfdbzqy4082iv4lp3pjdzpvbmmx"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicRanges Rsamtools]; }; +chipenrich = derive { name="chipenrich"; version="1.7.2"; sha256="08fmf80nlkr5yavq89nrzxxc8w8yfvpcfl2f5797a8yb5vg1palj"; depends=[GenomicRanges IRanges lattice latticeExtra mgcv plyr rms stringr]; }; +chipseq = derive { name="chipseq"; version="1.19.1"; sha256="1f84a0lscsh72n284h2i09zaimki3mlh73575bixy734lixjkvfn"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; +chopsticks = derive { name="chopsticks"; version="1.33.0"; sha256="0p6jsvn5pmbh0ws7kplkwx9dajl6npfd1icxds42kygkpcf3y8bz"; depends=[survival]; }; +chroGPS = derive { name="chroGPS"; version="1.13.1"; sha256="0ggzhi8fx9nrxcz88ail5m831hvg8pkqxmvj2xgxjvzbb0gk5sak"; depends=[Biobase changepoint cluster DPpackage ICSNP IRanges MASS]; }; +chromDraw = derive { name="chromDraw"; version="1.1.0"; sha256="1v3k6kiz2l216l61l8pr95fhyin6hqqg7qv9six5xg40xai8is7a"; depends=[GenomicRanges Rcpp]; }; +cisPath = derive { name="cisPath"; version="1.9.0"; sha256="1jdq159ixiixh9ppfc5g4pqi625vawag2w89q2l2n3fq57x890w8"; depends=[]; }; +cleanUpdTSeq = derive { name="cleanUpdTSeq"; version="1.7.1"; sha256="0inszzss1fqyhw18lx40iycvpzkm18djxmad1li8bd22hss759c2"; depends=[BiocGenerics BSgenome e1071 GenomicRanges seqinr]; }; +cleaver = derive { name="cleaver"; version="1.7.0"; sha256="14vbdagy61imql6z2qazzlqzp0r9ridydn7phvajc84lnwbf8xa3"; depends=[Biostrings IRanges]; }; +clippda = derive { name="clippda"; version="1.19.0"; sha256="1gd5b2n2qa9bv1n93vcdz8lg8kmn1lv923i3gzq8pcy7fbz7m5cs"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; +clipper = derive { name="clipper"; version="1.9.0"; sha256="0py5hdbf8wypw5r9r2d7b3239b83lyrybcvksrmiklv7snw9c2qx"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; +clonotypeR = derive { name="clonotypeR"; version="1.7.0"; sha256="1pwwjgln7r7035fdqqfb69fgql91cxfablbwid2m5xkdrwzpb57s"; depends=[]; }; +clst = derive { name="clst"; version="1.17.0"; sha256="0wsn5ins5hz2xq866wh71b7jk4six5cy3hq5ff2a04n20asaiq4i"; depends=[lattice ROC]; }; +clstutils = derive { name="clstutils"; version="1.17.0"; sha256="0bnqmmi5j0iy1zjxlj4b621d9llww4b2wvrq1vcqjm5wfrn7a372"; depends=[ape clst lattice rjson RSQLite]; }; +clusterProfiler = derive { name="clusterProfiler"; version="2.3.3"; sha256="1hsqfl6dp5671y3sr0qxr01fra1b6y44a7jnc94mqdfabsm9a9vx"; depends=[AnnotationDbi DOSE ggplot2 GOSemSim KEGGREST magrittr plyr qvalue topGO]; }; +clusterStab = derive { name="clusterStab"; version="1.41.0"; sha256="0sgj2k70fc3r3s19vxcx95z8s3a42yshl78swxp0qp55kidbhvdp"; depends=[Biobase]; }; +cn_farms = derive { name="cn.farms"; version="1.17.0"; sha256="09xasmanimx3mzis786iwy2nvxqa5rzvrvrz1hpsiyh5y77yrbnb"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; +cn_mops = derive { name="cn.mops"; version="1.15.0"; sha256="11yds13b65hnhaiqckphcl7hn9z85qv7jpwrp4knscl9y8bs3s78"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; }; +cnvGSA = derive { name="cnvGSA"; version="1.13.0"; sha256="1sswh1xwimki8ys08l2h95ajpnm5gr0bscvwilhjw4g2a0y7nibr"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; +coGPS = derive { name="coGPS"; version="1.13.0"; sha256="160cf9ijn5crvhwbqldix1n36jrmn51085sr4whgm765si57wwb4"; depends=[]; }; +coMET = derive { name="coMET"; version="1.1.0"; sha256="01baf156p0ldqhczrin2lsf4jir7158b0db5732jddnl5ayghsi3"; depends=[biomaRt colortools GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; }; +coRNAi = derive { name="coRNAi"; version="1.19.0"; sha256="1vidwyq8rnkbi0pfbh3mk8m3qj8acwqn7q6jm35gahy4y3p0nq7x"; depends=[cellHTS2 gplots lattice limma locfit MASS]; }; +cobindR = derive { name="cobindR"; version="1.7.1"; sha256="0mya51pynfdxfap3paylinqg10fpir7flsz1bng0sk34y15jnxbz"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; +codelink = derive { name="codelink"; version="1.37.0"; sha256="10s8x9j034j9vl7hv9w8ws4kihmw632b177ckiq0gsy2k63iampk"; depends=[annotate Biobase BiocGenerics limma]; }; +cogena = derive { name="cogena"; version="1.1.2"; sha256="0qjcjh65hbllmqzjnmr4vwgn7scs6lfb7g4pxka4w3r2ca444a0v"; depends=[amap Biobase biwt class cluster corrplot devtools doParallel fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; +compEpiTools = derive { name="compEpiTools"; version="1.3.4"; sha256="0y12sn2dh0x2y7nghkh6dm98b4ilg41694shw3m0fcgaz22c30kp"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; +compcodeR = derive { name="compcodeR"; version="1.5.3"; sha256="0208sxff40mjizr47zf6yf87irnnjm0gizdk9h5frbizdxl2i9nn"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; +conumee = derive { name="conumee"; version="1.1.0"; sha256="1sxl5m7yfqbzg76n06y1jcv0v75y7wf3ad66zw8v004nz84diaix"; depends=[DNAcopy GenomeInfoDb GenomicRanges IRanges minfi rtracklayer]; }; +convert = derive { name="convert"; version="1.45.0"; sha256="1sg152ma0y0n6vy9f0zas6znmndjp1j0n8vxa6ymw4pkg7li0fxa"; depends=[Biobase limma marray]; }; +copa = derive { name="copa"; version="1.37.0"; sha256="03sr5lcfxw49gnhm7xsdskbz740hirqba743617wcwkbay8nr5lj"; depends=[Biobase]; }; +copynumber = derive { name="copynumber"; version="1.9.0"; sha256="0zgkgyqzkhh9fwmrjcy06vi0g80nvr7193m5qbidgf3sbvkiabhr"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; +cosmiq = derive { name="cosmiq"; version="1.3.0"; sha256="1868sxwlmaqas3w3nrw4bvxfhs42qsm97gdwksp4fakpm039h757"; depends=[MassSpecWavelet pracma Rcpp xcms]; }; +cpvSNP = derive { name="cpvSNP"; version="1.1.0"; sha256="066y409zfz0bway990ygck5lf0vzl6whh212v4rpis1l9bzfv434"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; +cqn = derive { name="cqn"; version="1.15.1"; sha256="1g1ip7lxs82qq0qbhnx90hxmjiypc76p1sgx7yvj5nmp6wp1m5xy"; depends=[mclust nor1mix preprocessCore quantreg]; }; +crlmm = derive { name="crlmm"; version="1.27.0"; sha256="16i3ijqhwp6c2dshk8r7idrjwga3sm1qcafqz9gl4q6b04s5jvym"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; +csaw = derive { name="csaw"; version="1.3.7"; sha256="0bislfi25l4m5rviccp8nx5ilw9804h4dfxc928a8mxhc8piqgzx"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; }; +ctc = derive { name="ctc"; version="1.43.0"; sha256="139rxdvyvv3wvlc5q3581y5hkjkd5smxvb606mlxjb8lww4qmcj8"; depends=[amap]; }; +cummeRbund = derive { name="cummeRbund"; version="2.11.1"; sha256="0nd1a9wi2qvvdhfvkb18ql82bfzhz6fivc7wdfv90mibrd7ypb2a"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer]; }; +customProDB = derive { name="customProDB"; version="1.9.4"; sha256="0ws620i6s9p477zfns0m6qpzzhrsivjziv2gv3gmy19dhfh0ln08"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer stringr VariantAnnotation]; }; +cycle = derive { name="cycle"; version="1.23.0"; sha256="1fpn41xgnvn77m2bga3j70hh61ar0mns919ib21ap763j8lkbm19"; depends=[Biobase Mfuzz]; }; +cytofkit = derive { name="cytofkit"; version="1.1.1"; sha256="0kzy6ylijyypsii5vl77r0wl2s2rhnvj98qbiy96ziijfjmjmfcc"; depends=[Biobase e1071 flowCore ggplot2 gplots reshape Rtsne vegan]; }; +daMA = derive { name="daMA"; version="1.41.0"; sha256="0jfp6kxzys0w8vv8fr5shki79rimiagylvkz5avg2idvzgs2q1w8"; depends=[MASS]; }; +dagLogo = derive { name="dagLogo"; version="1.7.1"; sha256="1mqxhdwiaq9szg5krhxndr1wgl77cgxxxq271a5n53srkbfh77s4"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; +ddCt = derive { name="ddCt"; version="1.24.1"; sha256="0am65cwrhy0xijxfg1709rwvdjammdfz4y2g7cyd83d7chfaznxa"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; +ddgraph = derive { name="ddgraph"; version="1.13.0"; sha256="1krdxmcjrhbw5gdrg68m41m1mhb5q0ijmqhxbvvxzqm3wyh8v2g1"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; }; +deepSNV = derive { name="deepSNV"; version="1.15.3"; sha256="1sg4swpna7h4lmpzmqg1x4lqmyx1xq0fckz43gpvpk5s8li6j62h"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; +deltaGseg = derive { name="deltaGseg"; version="1.9.0"; sha256="0y8fw4gxmhsr5xrbg1k0s8207mhj6dmlbbmny2dn66c1qlg2bh24"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; +derfinder = derive { name="derfinder"; version="1.3.2"; sha256="11syvmgfw7sdl9p5sl0b0q9kkk37xdqil8qz70l0p9m9j1z385sq"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; +derfinderHelper = derive { name="derfinderHelper"; version="1.3.0"; sha256="0hgj1adh82w2b1gdw6zh8hxij4n5a0bsild66cpb0i8cny8a3ayj"; depends=[IRanges Matrix S4Vectors]; }; +derfinderPlot = derive { name="derfinderPlot"; version="1.3.2"; sha256="1fhgq1nr4qxv6l1qf1g92gw6c9h47i92ybxcr9m88kqp53y6flj4"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; }; +dexus = derive { name="dexus"; version="1.9.0"; sha256="1xnjs6gmzkdj1snwakq73bz8ypnxzzxh8ki9wv0ljfbfwv1j7z53"; depends=[BiocGenerics]; }; +diffGeneAnalysis = derive { name="diffGeneAnalysis"; version="1.51.0"; sha256="1k5as63cd87nnigc0yzaxvhskpnbr7l1ym2bqc57zsm3bwh8xxwb"; depends=[minpack_lm]; }; +diffHic = derive { name="diffHic"; version="1.1.7"; sha256="1h6qlvk7bbdfi0lg86kbd4milp3imgkq79w73gf1am4knpplks1g"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; }; +diggit = derive { name="diggit"; version="1.1.1"; sha256="0c3zy1d9bzb6asa4clgq738h7dj6md55gclwa244qyx857b58rqv"; depends=[Biobase ks viper]; }; +dks = derive { name="dks"; version="1.15.0"; sha256="1d66jfca6q8ni5vz5zh7fmxwh3y0yvl2p7gal7w55py6wvyssnl3"; depends=[cubature]; }; +domainsignatures = derive { name="domainsignatures"; version="1.29.0"; sha256="1wkypbm5ldwx8y2n16fajf450pwv6zipjdk0176a5rqihaflz80l"; depends=[AnnotationDbi biomaRt prada]; }; +dualKS = derive { name="dualKS"; version="1.29.0"; sha256="1a2wb137x98nmdm8dvnl4msl89mlyvm8f1kqzr6jhdj4wjv2hrg1"; depends=[affy Biobase]; }; +dyebias = derive { name="dyebias"; version="1.27.0"; sha256="095qcnri2g19m363ipdi31xgn20b51mbfv5mgkk21m6fww1npc92"; depends=[Biobase marray]; }; +easyRNASeq = derive { name="easyRNASeq"; version="2.5.2"; sha256="142chhn3p8c22vm9mky2mx32s6d09by99fmrck87nglg0w8l2n9j"; depends=[Biobase BiocGenerics biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; +ecolitk = derive { name="ecolitk"; version="1.41.0"; sha256="0jga35q98bidqjlqynq0cack4gwsm3hw34vgns67v37krjs4hn9f"; depends=[Biobase]; }; +edge = derive { name="edge"; version="2.1.0"; sha256="1xxz8qyagrfr92ldaxlgb8dfpm6nx3lyk6fa4dl0m8yvlr6lw2fa"; depends=[Biobase MASS qvalue snm sva]; }; +edgeR = derive { name="edgeR"; version="3.11.2"; sha256="0df181xjga322phjinlffl0j2mg61pq4p8h3sxx3xz100c6xrahr"; depends=[limma]; }; +eiR = derive { name="eiR"; version="1.9.1"; sha256="01wkz9lc6gi1a98q02c6zyzfsnkk52px60xg3lawp2419dvj2ww3"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; }; +eisa = derive { name="eisa"; version="1.21.0"; sha256="03366q5qj4wdfm4d9lwysmgz3bgwc53zynw2cmsj7w3yg6dj63km"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; +ensemblVEP = derive { name="ensemblVEP"; version="1.9.2"; sha256="10xjxafm97jnk7dfi0j1ahyd6hp45r5rpfr206fbiipcq3ha2p9h"; depends=[BiocGenerics Biostrings GenomicRanges VariantAnnotation]; }; +ensembldb = derive { name="ensembldb"; version="1.1.3"; sha256="1vp4bb3i5jw8kmxz1784wxwh2i9m344xhssfv5w4i2k9lx2anqrs"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; +epigenomix = derive { name="epigenomix"; version="1.9.1"; sha256="0jr0ly6sd818yhcpqk685y7fb4q8dd80w18qpwpypgf4ysymv36y"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; +epivizr = derive { name="epivizr"; version="1.7.7"; sha256="00hjvpg6vr0kd1nhyr3dfjqyxy8jfgfkv0lainj48w7lr9ld7y9w"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; }; +erccdashboard = derive { name="erccdashboard"; version="1.3.0"; sha256="06jvrlp0sfnkrcmyach1q0ry4pzyv2frzg4c0swr193vxv4mx14w"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; }; +exomeCopy = derive { name="exomeCopy"; version="1.15.0"; sha256="1047k3whc8pjcrvb10dmykbc3c7ah4fgzsiqxw7asp4ksiqpj5ii"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; +exomePeak = derive { name="exomePeak"; version="1.9.0"; sha256="05bdwp8msi9i0hi505pwm4lxa8m0syrws934418sgfhfldlh5sip"; depends=[GenomicFeatures Rsamtools rtracklayer]; }; +explorase = derive { name="explorase"; version="1.33.0"; sha256="0405q21ivvchmb37jksv46kwxgbmyiavznizn39asv6wrsvw62az"; depends=[limma rggobi RGtk2]; }; +fabia = derive { name="fabia"; version="2.15.0"; sha256="1631f6q30cxzaw7vqjacr44hwzrjbvk0sw3v41zagpbqbbr11swx"; depends=[Biobase]; }; +facopy = derive { name="facopy"; version="1.3.0"; sha256="0nm7jds5c4p471qyzv61byl61frwnf71kkvcdrc876168bd6s9y3"; depends=[annotate cgdsr coin data_table DOSE FactoMineR ggplot2 GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; }; +factDesign = derive { name="factDesign"; version="1.45.0"; sha256="08d7ma718s8rdbmk00jdbwn9d1g431iaff7hc4ra421drl95yql1"; depends=[Biobase]; }; +farms = derive { name="farms"; version="1.21.0"; sha256="1c0k2ffjqfrhkw0d7h6a6sffh50qvbc7jqd3glgrvbwjnmsys34v"; depends=[affy Biobase MASS]; }; +fastLiquidAssociation = derive { name="fastLiquidAssociation"; version="1.5.0"; sha256="0477z4inv374bv5qs6wr5lcndk0d4if4hf1qbwlvv070sh5001gi"; depends=[Hmisc LiquidAssociation WGCNA]; }; +fastseg = derive { name="fastseg"; version="1.15.0"; sha256="12a308lr292nisf0k0wzk5mxazw4izkcsip5nlh826y2h9b2yc6q"; depends=[Biobase BiocGenerics GenomicRanges IRanges]; }; +fdrame = derive { name="fdrame"; version="1.41.0"; sha256="1zmspa2mm7scv5lx83171hdn48y9vify58jcr6nxw15nj4lqbmsd"; depends=[]; }; +ffpe = derive { name="ffpe"; version="1.13.0"; sha256="0444g47cg6ci1lflmz84vjms0p918iaz65cm6whxx4z3pfjc55ls"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; +flagme = derive { name="flagme"; version="1.25.0"; sha256="0jj8rba2ggimwm709m2c78rpccvp9q8hx83c026pgmrryjv8qbzc"; depends=[CAMERA gplots MASS SparseM xcms]; }; +flipflop = derive { name="flipflop"; version="1.7.2"; sha256="0clwqz14lxg9m4jasjwksvs0afhv9rna2p8h91rgip5d3nhmjsp5"; depends=[GenomicRanges IRanges Matrix]; }; +flowBeads = derive { name="flowBeads"; version="1.7.0"; sha256="1knzfj14hwggvc41bba2chrjnl709bh2wxwv268mw18crc1gs140"; depends=[Biobase flowCore knitr rrcov xtable]; }; +flowBin = derive { name="flowBin"; version="1.5.0"; sha256="1728qzxpssh44ayk5bgjwdwzb98xalzciq7pzlcwg1yqgyxz81xv"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; +flowCHIC = derive { name="flowCHIC"; version="1.3.0"; sha256="1g6kkmcja3am6dawdkmhyz9pl9xqivnp95zqxh8vd3a4la0ysazb"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; +flowCL = derive { name="flowCL"; version="1.7.0"; sha256="0n7gsvsfvfcn1ysc2kzv564hnn963rg6zwzx70vzp8lzvg55z8db"; depends=[Rgraphviz SPARQL]; }; +flowClean = derive { name="flowClean"; version="1.5.0"; sha256="1ggzsm1zrvg7x0x9jvjiqm5172cm6lvkmzkk5v38pjvhplqgx4hi"; depends=[bit changepoint flowCore sfsmisc]; }; +flowClust = derive { name="flowClust"; version="3.7.01"; sha256="06y8sg5mdjzn3d18m5b3753q2g4s4yxm1v8vb6pkdszq88255w6k"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; +flowCore = derive { name="flowCore"; version="1.35.5"; sha256="1w9x5ynbfglj620i4ffg3p18q16ig553rfd52j7r0adlx8w1hm9d"; depends=[BH Biobase BiocGenerics corpcor graph Rcpp rrcov]; }; +flowCyBar = derive { name="flowCyBar"; version="1.5.0"; sha256="160vyp9pglsrv23m0118506bikwzi2mm9b1qgsrxjnzls2lqvjfa"; depends=[gplots vegan]; }; +flowDensity = derive { name="flowDensity"; version="1.3.0"; sha256="1z8s1d4qwavi5z8zmvac9yqyd19sma18z1jl129w6sl5964spi86"; depends=[car flowCore GEOmap gplots RFOC]; }; +flowFP = derive { name="flowFP"; version="1.27.0"; sha256="15n57slfn0z4vzqhk38mfqzb22r6krafqyp11hv1xsllp8my2a5g"; depends=[Biobase BiocGenerics flowCore flowViz]; }; +flowFit = derive { name="flowFit"; version="1.7.0"; sha256="079ygak8ysjh44l3gmvlc89x4argw15mlq380j77n19d3wqai8r9"; depends=[flowCore flowViz gplots kza minpack_lm]; }; +flowMap = derive { name="flowMap"; version="1.7.0"; sha256="030dv51xwskrc97kkm72wxbfsq1qj4fy9nknvxaydn3y1r2wakcs"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; +flowMatch = derive { name="flowMatch"; version="1.5.0"; sha256="1b81aik86m4y8n8khz7kxy2ibky7i06s9jzm4pydh41ypv6h0wv9"; depends=[Biobase flowCore Rcpp]; }; +flowMeans = derive { name="flowMeans"; version="1.23.0"; sha256="0y7dkfz0wjgmyjvsvqcqb9m59xq8bzd8bcp06dd6pgvb33aqlqr4"; depends=[Biobase feature flowCore rrcov]; }; +flowMerge = derive { name="flowMerge"; version="2.17.0"; sha256="1sc7xqp4vkgc84by4vmbj0iy0vsrwadglwxbziigjai0ijsgrvfn"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; +flowPeaks = derive { name="flowPeaks"; version="1.11.0"; sha256="0ib9mgfq8lmakw2g0hj0dc75ifllpf5s9yfpkq3p5f6qqa8gncqw"; depends=[]; }; +flowPlots = derive { name="flowPlots"; version="1.17.0"; sha256="1y4g2kjdha6qn79cyb9mxkkj33wd2jndrpnpd1p0x1pvnjlyxhas"; depends=[]; }; +flowQ = derive { name="flowQ"; version="1.29.0"; sha256="1wp5h8bpavcs4plgy12qwm2y8ds8gdkwp5dhkbi4yqy1bl5cl0xj"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; +flowQB = derive { name="flowQB"; version="1.13.0"; sha256="19z25lhjdlc1hq6gkqajhi80920zi89yryzwabdazbhb9i5f1ni0"; depends=[Biobase flowCore MASS]; }; +flowStats = derive { name="flowStats"; version="3.27.0"; sha256="0vw3a426wa684fr8g2jh8c64dyfya0z5azz1ncfd7xszknyc51si"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mvoutlier]; }; +flowTrans = derive { name="flowTrans"; version="1.21.1"; sha256="0c45blakwi4x0mr40ss5m3gh9bf0cvy9lwid274swd4qwydqyy1l"; depends=[flowClust flowCore flowViz]; }; +flowType = derive { name="flowType"; version="2.7.0"; sha256="0zrwf7h62jd5xgs0kqv34mh8q2knaiaj2adrd53i56jb514yfnb9"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; +flowUtils = derive { name="flowUtils"; version="1.33.0"; sha256="0r7l8fbi3p1y7ql60czlqhxx4l0fzxv50phwkr5w85jxxldk2pjm"; depends=[Biobase corpcor flowCore flowViz graph RUnit XML]; }; +flowVS = derive { name="flowVS"; version="1.1.0"; sha256="0g1zmcr1wd3xccx2z1akwk177innzrngmxc5r4hjanl37l0skrpq"; depends=[flowCore flowStats flowViz]; }; +flowViz = derive { name="flowViz"; version="1.33.2"; sha256="11qbpf0yw1gjzgw3pb7mnqfvwd60nms4cwrwag8h36a5whfd158c"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; +flowWorkspace = derive { name="flowWorkspace"; version="3.15.6"; sha256="111a5kvcz3hyw7269fg6b0885g63f8r02dkzfidfcq2pg4n2sa8w"; depends=[BH Biobase BiocGenerics data_table flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow plyr RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; }; +flowcatchR = derive { name="flowcatchR"; version="1.3.0"; sha256="0zgbnfh3sq6s8y81al379lrif67w5xffc6n3fd5y8bp2wmdqmx8b"; depends=[abind BiocParallel colorRamps EBImage rgl]; }; +fmcsR = derive { name="fmcsR"; version="1.11.4"; sha256="1ah1gyrhcyv4kqxi4n8yj14mgjh6v9l820k5hzb7fwbw74kh2pa5"; depends=[BiocGenerics ChemmineR RUnit]; }; +focalCall = derive { name="focalCall"; version="1.3.0"; sha256="1g3vk72xnzy2vsjjq7dnmmxiy29qg2bqij1iim9psb2zd6w387r5"; depends=[CGHcall]; }; +frma = derive { name="frma"; version="1.21.0"; sha256="0glsdwzlfba9j850s393jm6ada4j04nz4lilym81qvs9y9jccscp"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; +frmaTools = derive { name="frmaTools"; version="1.21.0"; sha256="1k5ghz0ddcypisw2l64cg3r9lhvvmdiv1gpbb9b56rw0sk27w0cr"; depends=[affy Biobase DBI preprocessCore]; }; +gCMAP = derive { name="gCMAP"; version="1.13.0"; sha256="06qb51rxxjqanh92g0cj6kwnrcbgkc2f0slav2bxkh2rkrjpyvcn"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; +gCMAPWeb = derive { name="gCMAPWeb"; version="1.9.0"; sha256="0xn1iyvrw3idhwszvipf3y69i1w1azr5hhgklg57v9wibnq02q9g"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; +gQTLBase = derive { name="gQTLBase"; version="1.1.1"; sha256="033lfnn0zkkkzay25fkj7wizyd63jxr2nkgga22iwm8ffjgpyac0"; depends=[BatchJobs BBmisc BiocGenerics doParallel ff ffbase foreach GenomicRanges S4Vectors]; }; +gQTLstats = derive { name="gQTLstats"; version="1.1.0"; sha256="1hc2lwvq5bzxjl7xap8ykr7ja9jxpp6ydalc582v2jz6r8yp0wx8"; depends=[AnnotationDbi BatchJobs Biobase BiocGenerics doParallel dplyr foreach gam GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gQTLBase IRanges limma reshape2 S4Vectors snpStats VariantAnnotation]; }; +gaga = derive { name="gaga"; version="2.15.1"; sha256="17ccfnvrqq6p9dynlacxw4797n1h9773ilmsh53mzs52w1k2cybm"; depends=[Biobase coda EBarrays mgcv]; }; +gage = derive { name="gage"; version="2.19.0"; sha256="1g8i3w715s10azw7xyzq6gjmz5ilxll4qcf367jn6dwz8xnf15dr"; depends=[AnnotationDbi graph KEGGREST]; }; +gaggle = derive { name="gaggle"; version="1.37.0"; sha256="1429xffj08m3dgfp6z34ngwzaq0wyjm3wv3cwfxzl5pzzy200k41"; depends=[graph rJava RUnit]; }; +gaia = derive { name="gaia"; version="2.13.0"; sha256="10vpz16plzi651aj1f5h3iwz6nzrrdnl9sgx3sgv5wmks2haqij4"; depends=[]; }; +gaucho = derive { name="gaucho"; version="1.5.0"; sha256="0kl8fw1n6dkqmrjp0xri3w2fhx25llrjag7j50m2xh371zfw9chc"; depends=[GA graph heatmap_plus png Rgraphviz]; }; +gcrma = derive { name="gcrma"; version="2.41.0"; sha256="03ncgd26hmj4l0mnnif1cf5qg99ir66d0mafx7wamrr930m17v8x"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; +gdsfmt = derive { name="gdsfmt"; version="1.5.1"; sha256="04pp9lw0548243k6almy4ckwv7sd805b7kkp87dq3z087h7287s7"; depends=[]; }; +geNetClassifier = derive { name="geNetClassifier"; version="1.9.2"; sha256="04k1j2hqbs75k250i8b17bb8b84mij0hyb3yk1jl1368mpn5vmhc"; depends=[Biobase e1071 EBarrays minet]; }; +geecc = derive { name="geecc"; version="1.3.0"; sha256="0s955yg31papyny42nnqq711hawk5nn3dqgsf24ldz93vjiif9dr"; depends=[gplots hypergea MASS]; }; +genArise = derive { name="genArise"; version="1.45.0"; sha256="07xyy6wa22sa0ziqvy1dvpmpq11j56aw70kvj834da003yvabmg1"; depends=[locfit tkrplot xtable]; }; +geneRecommender = derive { name="geneRecommender"; version="1.41.0"; sha256="0c06xg7jbcn4lnrkwgwwdjq383a7d34svf9cdqlaz5fc662nl5v0"; depends=[Biobase]; }; +geneRxCluster = derive { name="geneRxCluster"; version="1.5.0"; sha256="1m5jxv0qhm68iv6rwy91nkx2mz9b7zh9mdz98gva8mb6gm88iiig"; depends=[GenomicRanges IRanges]; }; +genefilter = derive { name="genefilter"; version="1.51.0"; sha256="0zrav2zw7v67i564v20y02cn2ycyk9ms8cnj2b2l7ajd1lq5cp9s"; depends=[annotate AnnotationDbi Biobase survival]; }; +genefu = derive { name="genefu"; version="1.19.0"; sha256="05rzq0dy4v7z57zqdg9v2csj3ncv2n76igbz2a9nvjpmqrgfcqlc"; depends=[amap biomaRt mclust survcomp]; }; +geneplotter = derive { name="geneplotter"; version="1.47.0"; sha256="03vl60rhhfh8imp0ihx83gq9r64gdnh2gjdm7pzi4yc03afqgaw8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; +genoCN = derive { name="genoCN"; version="1.21.0"; sha256="10q16kch3gn6phx1zk3aii87f4liy5l6mp0kvjf29x6aam11l7c7"; depends=[]; }; +genomation = derive { name="genomation"; version="1.1.4"; sha256="1217xm5rqngag4r2r95z7wxwmdlassghwkxqpljqnangix4c0h96"; depends=[GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges plyr readr reshape2 Rsamtools rtracklayer]; }; +genomeIntervals = derive { name="genomeIntervals"; version="1.25.0"; sha256="1dy71hdqw02kv5rqa80w4bfbn247hj6fqqsc12qimk3l60z38rpr"; depends=[BiocGenerics intervals]; }; +genomes = derive { name="genomes"; version="2.15.0"; sha256="1a172fz97b6xg4w91dcjbdr9kx0grzf71qn2j7zlyz52dcqppybb"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; }; +genoset = derive { name="genoset"; version="1.23.2"; sha256="0j23ym7v47fv2f2j25hfc4xh1113614ixdd1accx9gindbqf72cl"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; +gespeR = derive { name="gespeR"; version="1.1.0"; sha256="0hp2pw4z5kgj4av339v7r43is082c47ms422pwwa5f2pljijz2z6"; depends=[Biobase biomaRt cellHTS2 doParallel foreach ggplot2 glmnet Matrix reshape2]; }; +ggbio = derive { name="ggbio"; version="1.17.1"; sha256="1pc98v500l476sa1krxrj24lfsnbs13ws9hdix3vxfkbklvqjww7"; depends=[Biobase BiocGenerics Biostrings biovizBase BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; +ggtree = derive { name="ggtree"; version="1.1.8"; sha256="1y9h93wn0zmmaz4hdn2xgz226y8pak0lnix5wvv1xax7myzhkbyl"; depends=[ape Biostrings colorspace EBImage ggplot2 gridExtra jsonlite magrittr reshape2]; }; +girafe = derive { name="girafe"; version="1.21.0"; sha256="11j9aiy6s5cdhwc9591vv344qnwlgn4hvwlp2rx47gccrnxxaqxi"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; +globaltest = derive { name="globaltest"; version="5.23.0"; sha256="1cwgqq5i3v6pp5kp4qi0jxqfh09zgaj719mk4kci3wxb18dc6ql7"; depends=[annotate AnnotationDbi Biobase multtest survival]; }; +gmapR = derive { name="gmapR"; version="1.11.0"; sha256="0vn5iz44gcp4k0y5y4pjw6m60w75k82kv25hmnjshh8cpcwqkxkp"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; +goProfiles = derive { name="goProfiles"; version="1.31.0"; sha256="0nnc5idd3p969nhcsw2bjv7ws1qlb30sywhvpy8kcvk64wzz4jgw"; depends=[AnnotationDbi Biobase]; }; +goTools = derive { name="goTools"; version="1.43.0"; sha256="104xj0q1151ch0b4sswnky6shscx6fps25ycmig1s1ingd8dqnby"; depends=[AnnotationDbi]; }; +goseq = derive { name="goseq"; version="1.21.1"; sha256="175xg4qyy2iq9vmxsvd120qb9s3xn51ibsrvc1a3lrnrlii992fk"; depends=[AnnotationDbi BiasedUrn BiocGenerics mgcv]; }; +gpls = derive { name="gpls"; version="1.41.0"; sha256="050db8ag8wpngfkw686r9vjvdgbpz0slrdnmkb0vcm5ijzm172b2"; depends=[]; }; +gprege = derive { name="gprege"; version="1.13.0"; sha256="0z27521mjn5ipjq8wi3fbh2qw4k1q694l8268f8lypr9f357i1q4"; depends=[gptk]; }; +graph = derive { name="graph"; version="1.47.2"; sha256="0db15kd5qf993qdbr7dl2wbw6bgyg3kiqvd1iziqdq6d2vvbpzbj"; depends=[BiocGenerics]; }; +graphite = derive { name="graphite"; version="1.15.0"; sha256="1nzyrc3cwy35m7ijr5pjanvw868yw2d7sl9h3ns8w70af8ih6z14"; depends=[AnnotationDbi BiocGenerics graph]; }; +groHMM = derive { name="groHMM"; version="1.3.0"; sha256="0kx574xs0k51wwkvm6rbrrgr76ziwkkyqhiy076yzfsfkm3d1jvf"; depends=[GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; +gtrellis = derive { name="gtrellis"; version="1.1.0"; sha256="0cr4p22h0xh18pbr1jnz9dr6nv1q5a2bnx4nq5pz9jnn70lg7384"; depends=[circlize GetoptLong]; }; +gwascat = derive { name="gwascat"; version="2.1.3"; sha256="0wjl53zfrn6adwlfrqxj3nqndg753pi03dsm7xxjv7x2rkx1z1k8"; depends=[AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicRanges gQTLstats Gviz IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; +h5vc = derive { name="h5vc"; version="2.3.0"; sha256="1cl00k13x03sm60gfkxmaf6ba9kw4186cnik08zn446fipxqypla"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges reshape rhdf5 Rsamtools S4Vectors]; }; +hapFabia = derive { name="hapFabia"; version="1.11.0"; sha256="1jbj1bxqmvldpbbyq6d854srvzsr14jva1711zn4387b407knz7w"; depends=[Biobase fabia]; }; +hiAnnotator = derive { name="hiAnnotator"; version="1.3.2"; sha256="104d6wp331dvsdk5p9l7m70xr9jrwx0nzlrapi95c0p1nr3wr7bl"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; +hiReadsProcessor = derive { name="hiReadsProcessor"; version="1.3.0"; sha256="16gcjaiw8j82y5wzcbhh3yjym8xi4dqsf30i64ah6rb30i3bk716"; depends=[BiocGenerics BiocParallel Biostrings GenomicAlignments GenomicRanges hiAnnotator plyr rSFFreader sonicLength xlsx]; }; +hierGWAS = derive { name="hierGWAS"; version="0.99.2"; sha256="1i3ykpslp79y1v156bja971z3g3v1yb7bb2w26gv1p1kd8f57s6d"; depends=[fastcluster fmsb glmnet hlr]; }; +hopach = derive { name="hopach"; version="2.29.0"; sha256="08hfq74s3a4q94awhw6fiwlfnnv3rhkfpz56jbcyp6bi6y1rrp9d"; depends=[Biobase BiocGenerics cluster]; }; +hpar = derive { name="hpar"; version="1.11.0"; sha256="025hdmb70h2zf4g06spfdm09ni3i4qc21c2hp0mjdp3b2y2f9g9r"; depends=[]; }; +htSeqTools = derive { name="htSeqTools"; version="1.15.1"; sha256="0pv6csw7bgknjm0q42hrf3x22bx3xs0xm9hq9i46plwglq6c8kvn"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS]; }; +hyperdraw = derive { name="hyperdraw"; version="1.21.0"; sha256="0w1rcaw5fysj257c8ybcvmrdayvkcmfl670ysg2wcp8nrgv6z7vg"; depends=[graph hypergraph Rgraphviz]; }; +hypergraph = derive { name="hypergraph"; version="1.41.0"; sha256="06fvmda8x81bv5bn21pmvpfx9ni01l23q1ph9rh3qj803mwa0d72"; depends=[graph]; }; +iASeq = derive { name="iASeq"; version="1.13.0"; sha256="0d9ciilyc0aps3mnhdwvy69lv1m0fmv4gjdwr6rpdc7xsrrap35y"; depends=[]; }; +iBBiG = derive { name="iBBiG"; version="1.13.0"; sha256="09g9inaxmc94vfjv247c5ni591lnapmch5dq9s2havfdyss56n69"; depends=[ade4 biclust xtable]; }; +iBMQ = derive { name="iBMQ"; version="1.9.0"; sha256="08snz38d1jig0n989bwyvcayb83xyfb1cp927zvmxrnsyi7piqda"; depends=[Biobase ggplot2]; }; +iChip = derive { name="iChip"; version="1.23.0"; sha256="081s08v7n8l80r5dlfxdwibw5gsr7rjm6hgc0r5fhzpw7kb5svir"; depends=[limma]; }; +iClusterPlus = derive { name="iClusterPlus"; version="1.5.0"; sha256="0r0pbp9kn9rsv3hj7fai55cgfwa31rlg8zd7x8311ajg2q3kxwfd"; depends=[]; }; +iPAC = derive { name="iPAC"; version="1.13.0"; sha256="02cawn395mymgxmhrcff9q57dwb8xrwba7z8dg6jzda3kbixzc1x"; depends=[Biostrings gdata multtest scatterplot3d]; }; +iSeq = derive { name="iSeq"; version="1.21.0"; sha256="0jp1p56wqdyiamd5jqiqz0sdc5snp1cds48x7449m4lsaqzmc3l4"; depends=[]; }; +ibh = derive { name="ibh"; version="1.17.0"; sha256="1rcnmsg4iynsk9cfx6bwym9akhxapqkq31cgj6a9rb00l5g75fx3"; depends=[]; }; +idiogram = derive { name="idiogram"; version="1.45.0"; sha256="1kpviyzmfkqkrdy8gchdr0zlxzrg3qv8sg6r0b3qk27gii2bsprf"; depends=[annotate Biobase plotrix]; }; +illuminaio = derive { name="illuminaio"; version="0.11.1"; sha256="1d0jb5wisllhcdaj6f19nxswl4lccmjhnrwycckd22qjdw29kdpl"; depends=[base64]; }; +imageHTS = derive { name="imageHTS"; version="1.19.0"; sha256="1paw8ym90lj42kc1bbmbyaz77kq9gzrhij43p5mg0ra6jl1f53v4"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; +immunoClust = derive { name="immunoClust"; version="1.1.0"; sha256="11dykszddx9qm3fvpj7q96vjh46ndn695cvls7p5grlci9i4443l"; depends=[flowCore lattice]; }; +impute = derive { name="impute"; version="1.43.0"; sha256="1wp02zd2vgpkalz830kah5135amrhv0gj6nqr3hs34yw3nnzcvxa"; depends=[]; }; +inSilicoDb = derive { name="inSilicoDb"; version="2.5.0"; sha256="1w5irx042z8if0pnvw9ra4a0hm0m1nbc2s9l2j59ww9l2qhj8hiq"; depends=[Biobase RCurl rjson]; }; +inSilicoMerging = derive { name="inSilicoMerging"; version="1.13.0"; sha256="0zaqwachxn3anbjyn0akv0n2djg08475cdxz7c44ja635r1f6y1j"; depends=[Biobase]; }; +intansv = derive { name="intansv"; version="1.9.0"; sha256="0vb5hls1yyw0x0ff2xcjmxplg0gar9g9xvs1bqw96bf9akcr12r9"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; +interactiveDisplay = derive { name="interactiveDisplay"; version="1.7.1"; sha256="0xqghsy7s7m2xkngsqjzxrfvs7jy2bqprvx4qm2a8d24q392abs0"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; +interactiveDisplayBase = derive { name="interactiveDisplayBase"; version="1.7.0"; sha256="0032ljfx6pj0c11imfhxsxvrcn3gwyb6j29xl8xv48x8z44r0vas"; depends=[BiocGenerics shiny]; }; +inveRsion = derive { name="inveRsion"; version="1.17.0"; sha256="1km1h75dh5q505x1ddlhvyqxy4c10wvlviiz2l8sv3g3m9mbd26h"; depends=[haplo_stats]; }; +iontree = derive { name="iontree"; version="1.15.0"; sha256="0frq4f357n5w08nwz3m7s0hv858kgcnlvxb4907yrg1b11zpfvmm"; depends=[rJava RSQLite XML]; }; +isobar = derive { name="isobar"; version="1.15.0"; sha256="0zkj2i1hhs9nwflnwidzpnqcs08vbv3vqwz244shs9i7h0c5fd16"; depends=[Biobase distr plyr]; }; +iterativeBMA = derive { name="iterativeBMA"; version="1.27.0"; sha256="18g04l2bksjc2563kd2fmjygpci6pdw9lxv4ax0kpbfvc7zwbz17"; depends=[Biobase BMA leaps]; }; +iterativeBMAsurv = derive { name="iterativeBMAsurv"; version="1.27.0"; sha256="1l36lmxlwq16kzh8i8nbi8bbrgqc7im1b5pcc170q89x6rfgvyf7"; depends=[BMA leaps survival]; }; +jmosaics = derive { name="jmosaics"; version="1.9.0"; sha256="00c84fh5798yyzmsy985b79fcf2yz8y8am13dj7xgnzxl5nj32v1"; depends=[mosaics]; }; +joda = derive { name="joda"; version="1.17.0"; sha256="0y3z4shl1vmx19wwp6msz5igjgmy5rkygj7ikpjjcksrjdwqskrz"; depends=[bgmm RBGL]; }; +kebabs = derive { name="kebabs"; version="1.3.3"; sha256="10pnr5fd2ni4w69qp30q81d1rbyy0844sx1fskmv15d5ld2w5wkq"; depends=[Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; +keggorthology = derive { name="keggorthology"; version="2.21.0"; sha256="1d3dz61llgmdnyqxqwv03pacfs97lzynzpjpmn7grf7bbpybjk2q"; depends=[AnnotationDbi DBI graph]; }; +lapmix = derive { name="lapmix"; version="1.35.0"; sha256="1sps41l210h782bry6n8h55ghnlqn7s5dx0bx2805y5izz01linm"; depends=[Biobase]; }; +les = derive { name="les"; version="1.19.0"; sha256="1b3zcvflwyybrh9pf33a0fn5qz6918sszjf0n666iqd3hh7zph8z"; depends=[boot fdrtool gplots RColorBrewer]; }; +limma = derive { name="limma"; version="3.25.9"; sha256="19kzyja25bchvcnbl8g2xfzi1rypja44312g94qssiyanlw1i2bp"; depends=[]; }; +limmaGUI = derive { name="limmaGUI"; version="1.45.0"; sha256="05pqzb5nq3paddq2zw80gvdaf8rvynga8zs24rwzjpz3ylakqngr"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; +lmdme = derive { name="lmdme"; version="1.11.0"; sha256="0j41rfvbhz31vniax7njnslxd94lws4jjfv3hc2s1ihxnj41dcma"; depends=[limma pls]; }; +logicFS = derive { name="logicFS"; version="1.39.0"; sha256="1sz4bxsg76437j42i6cpbqvj5a35q7dwhya4yh1gmknqjrrcrv56"; depends=[LogicReg mcbiopi]; }; +logitT = derive { name="logitT"; version="1.27.0"; sha256="13gglwkvwrc5xr44ynz10qzyksry0wamk9mjlsfb18c2ncbnyypq"; depends=[affy]; }; +lol = derive { name="lol"; version="1.17.1"; sha256="0adj2bg8akb3z0w3wqj6bdlypf9c587k5c2npx0l21hgy4qv7p8k"; depends=[Matrix penalized]; }; +lpNet = derive { name="lpNet"; version="2.1.1"; sha256="15v3mpxrm1qq3hnwwnahziafpy83b35i69qyggdvzszwg1cpn5vi"; depends=[lpSolve nem]; }; +lumi = derive { name="lumi"; version="2.21.1"; sha256="16cg8zsfvw4fc51zr27ymp7a0qc59y0cvp2j7bsfw6ip0avmgkgk"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; +mAPKL = derive { name="mAPKL"; version="1.1.0"; sha256="1knjvwd0z4i70py0dqcngz56j78ylhcxsw8dyxj80ns5jzsdppbx"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene]; }; +mBPCR = derive { name="mBPCR"; version="1.23.0"; sha256="0c0idj213l8gwxkh9sb03dr4jhlbwvkpghldccbjrqnk4jqs4zpp"; depends=[Biobase oligoClasses SNPchip]; }; +mQTL_NMR = derive { name="mQTL.NMR"; version="1.3.0"; sha256="05q3p6pxi5x89z3zyrvdv5p2lzwr3as3zwcg8k0zm70liyczqcbx"; depends=[GenABEL MASS outliers qtl]; }; +maCorrPlot = derive { name="maCorrPlot"; version="1.39.0"; sha256="14p6cliik2ar0x8q4x66p43lsdbz11sqa7szafqvk7aw3pbszgh4"; depends=[lattice]; }; +maPredictDSC = derive { name="maPredictDSC"; version="1.7.0"; sha256="0mfip8h5brd2ri4cnbcsdc7h7m94qq3afl2amvz8l3gj38y21gvk"; depends=[affy AnnotationDbi caret class e1071 gcrma limma MASS ROC ROCR]; }; +maSigPro = derive { name="maSigPro"; version="1.41.0"; sha256="1m8dzdas2063wvxi0apn1g4mbh365wpi29wx4acs3frxvhw9ll3g"; depends=[Biobase limma MASS Mfuzz]; }; +maanova = derive { name="maanova"; version="1.39.0"; sha256="1m3ikf3r99q0zq3lrkq88vhs8k9z2y39rsv0w7yq4gimj42fxfb6"; depends=[Biobase]; }; +macat = derive { name="macat"; version="1.43.0"; sha256="1h4yi0a5mpikqq30rc90xprfjvhjlc6f9yjzlw8iynv4kgxajymk"; depends=[annotate Biobase]; }; +made4 = derive { name="made4"; version="1.43.0"; sha256="0jh90rhwp1qdiz5jfkp87xdxbzkb1r10rphjikr025vf5zk9ipfv"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; +maigesPack = derive { name="maigesPack"; version="1.33.0"; sha256="1sig032263lapric0hh6bmimjbq4hbarzdqp6k2pzhsc92dyybrl"; depends=[convert graph limma marray]; }; +makecdfenv = derive { name="makecdfenv"; version="1.45.0"; sha256="0ybyimcd7hkb2dy9cihy28h53ybijn5bdrlibwmxwbb8wxbqczag"; depends=[affy affyio Biobase zlibbioc]; }; +manta = derive { name="manta"; version="1.15.0"; sha256="0yf85qzvs2ngqiw98pmc3c6zdjphimjnkmd64bnv05aclpkadz7b"; depends=[caroline edgeR Hmisc]; }; +marray = derive { name="marray"; version="1.47.0"; sha256="0m2lkags00851xf3h48h0bj44ndfc91a2wq3z0ywnz7wzfisv9cc"; depends=[limma]; }; +maskBAD = derive { name="maskBAD"; version="1.13.0"; sha256="1j187m0qbri49a148m8nnsqfpngzy3l3r9r01wnp0jfc7nfbq5dl"; depends=[affy gcrma]; }; +massiR = derive { name="massiR"; version="1.5.0"; sha256="19snv6w1xvysd9090lmnk6f7vkfgr3q0aqxfp50fp4hgfamvfm7r"; depends=[Biobase cluster diptest gplots]; }; +matchBox = derive { name="matchBox"; version="1.11.0"; sha256="1wnn14l0qfxklz2ljqczq7n22926333d8l68jy90ak33wcfqmh5n"; depends=[]; }; +mcaGUI = derive { name="mcaGUI"; version="1.17.0"; sha256="12xll5kpbwm3wcf047w6kaja6c0ghh6zzfblhmc7ixf43f5f8i53"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; +mdgsa = derive { name="mdgsa"; version="1.1.0"; sha256="118b6h62i7yp26w1xqb4qdqrpwwkgp628g600hhzdb7w0prdk37a"; depends=[AnnotationDbi cluster DBI Matrix]; }; +mdqc = derive { name="mdqc"; version="1.31.0"; sha256="1zqxbhf29bdd12g019y8nimgzbzghkmaj7iz6q2x97rbjd7kl90l"; depends=[cluster MASS]; }; +meshr = derive { name="meshr"; version="1.5.1"; sha256="0z90bxqn5l0a9xgcdx784539xf8arni1ahj02k4j9k44pckl8sl5"; depends=[BiocGenerics Category cummeRbund fdrtool MeSHDbi S4Vectors]; }; +messina = derive { name="messina"; version="1.5.0"; sha256="0hhhzw4nafsdjsl7m786315449yqppvfs82fgfw4mxav2dp5h7n2"; depends=[foreach ggplot2 plyr Rcpp survival]; }; +metaArray = derive { name="metaArray"; version="1.47.0"; sha256="11vl7lzdsgcg28940lngchlvdi64cyjm0qc42h85dbkk4p55mbpx"; depends=[Biobase MergeMaid]; }; +metaMS = derive { name="metaMS"; version="1.5.0"; sha256="1nd4b525yyya6xxfa373924z34qmz28nai14h5ww7kkczpjzig1s"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; +metaSeq = derive { name="metaSeq"; version="1.9.0"; sha256="1z8i4c5fxdwvja77jvziq0djkdsis56b5491i579yb6ydcc0pc6b"; depends=[NOISeq Rcpp snow]; }; +metabomxtr = derive { name="metabomxtr"; version="1.3.2"; sha256="0wbpb79k9026ql0csgvmxf0sxy7iws6lm21k7vhg8vaizk84f4d1"; depends=[Biobase Formula multtest optimx plyr]; }; +metagene = derive { name="metagene"; version="2.1.0"; sha256="0fk7cgf96g1ax009g6f45jppb0w80akv5n3iwaaryy5b9pvsfk21"; depends=[BiocParallel biomaRt GenomicAlignments GenomicRanges ggplot2 gplots muStat R6 Rsamtools rtracklayer]; }; +metagenomeSeq = derive { name="metagenomeSeq"; version="1.11.10"; sha256="0b9vylijb6gzri61qn8wkj9si1zrgznzqhxzib1aw9y71v8y8k05"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; +metahdep = derive { name="metahdep"; version="1.27.0"; sha256="0kjd27brcvhfqbqk9r3fclbzf2np2zj88gi522y1c6vh3pc6fd22"; depends=[]; }; +metaseqR = derive { name="metaseqR"; version="1.9.0"; sha256="0p8bpnjm73jkng2xrypnz14rmrw1pppkrx1r88vnx33hzpkx83zx"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; +methVisual = derive { name="methVisual"; version="1.21.0"; sha256="18kin1ibcc4ilfh59qgb0zilhvhvs0a1gmbg0lbvj2r0kbsk1ryy"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; +methyAnalysis = derive { name="methyAnalysis"; version="1.11.0"; sha256="0ka0svxvb76j0xkdx4pbwf2cyplihh45mb953csrapyh5r6hxwkn"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi rtracklayer S4Vectors VariantAnnotation]; }; +methylMnM = derive { name="methylMnM"; version="1.7.0"; sha256="08y13kkmafn2h55wwkgs1mpskb4i2wpxzzgjdr9gb3ns06qc9799"; depends=[edgeR statmod]; }; +methylPipe = derive { name="methylPipe"; version="1.3.3"; sha256="1skds6ac2s2grb3s5ay0b6j91qmpag8cmqqh0plnqjvh5zdsi733"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; +methylumi = derive { name="methylumi"; version="2.15.1"; sha256="02bgqja3zzd3ps8a2r6k9whdvnzi4h44vjmrjgqljmmr40pspqqw"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; +mgsa = derive { name="mgsa"; version="1.17.0"; sha256="1nic4bgk3g3j2l6vr3i3msmid2bz0n7bq8f8zq26n45sr37wb4wq"; depends=[gplots]; }; +miRNApath = derive { name="miRNApath"; version="1.29.0"; sha256="07r37gzn0y5cp4awj2i638i2cn019rnp7b4hnaqi3gc71sdzb25c"; depends=[]; }; +miRNAtap = derive { name="miRNAtap"; version="1.3.0"; sha256="0hmnhbbai04wp8hxrpgq04czfx2c49aihq7iiz86x9hzlj6xhgn6"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; +microRNA = derive { name="microRNA"; version="1.27.0"; sha256="1akq1yxc03v7jmpypmr8a9lx5h2nfdjp1y0433lyffbd49wia2gm"; depends=[Biostrings]; }; +minet = derive { name="minet"; version="3.27.0"; sha256="1wnn3nlpa0ymk465ax2s65i3w9xplhwssvng9qs7p3v2z72p9nqp"; depends=[infotheo]; }; +minfi = derive { name="minfi"; version="1.15.7"; sha256="09v8flkn0ja1q9glzfa5bsaflvx7w240w38fp59dgknz4xr1zp3r"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; +mirIntegrator = derive { name="mirIntegrator"; version="0.99.5"; sha256="0r8l1lgf9rdxnr0dvc8r05ahjf3q0r4syy9mzx4p3f04s0c78q3h"; depends=[AnnotationDbi ggplot2 graph Rgraphviz ROntoTools]; }; +missMethyl = derive { name="missMethyl"; version="1.3.1"; sha256="07l7jnw5ixlhhphrxhalkh50swc8jr4pfkgvzf33hiid4g9jkqsk"; depends=[limma methylumi minfi ruv statmod stringr]; }; +mitoODE = derive { name="mitoODE"; version="1.7.0"; sha256="182ifqh1g1yz8rbsxdqgk4hzlz3dwy0d03iklbg39cxy6qhgxqg4"; depends=[KernSmooth MASS minpack_lm]; }; +mmnet = derive { name="mmnet"; version="1.7.0"; sha256="0za8a3j2fzyi15hd7l3ccw5qy3lyl7vihbcbixaw2kb81hmpphsa"; depends=[Biobase biom flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; }; +mogsa = derive { name="mogsa"; version="1.1.3"; sha256="0rzqlm0c4skjgic334nfd2s7p0xk86mv1zbwjk036nwf5lnmdd0i"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; +monocle = derive { name="monocle"; version="1.3.0"; sha256="1ir0f80nsrvpl4i441irprd4pk1f53dxf1jnvnjg5zrkj7dz3wrw"; depends=[Biobase BiocGenerics cluster combinat fastICA ggplot2 igraph irlba limma matrixStats plyr reshape2 VGAM]; }; +mosaics = derive { name="mosaics"; version="2.3.0"; sha256="1jv5sv6xyh5i5m7kypgwc5g3sfsf0n5n683gijxcvrrwpvvfpnqy"; depends=[IRanges lattice MASS Rcpp]; }; +motifRG = derive { name="motifRG"; version="1.13.0"; sha256="01k47padfs393pprjyz9pp9z6vjqlxi6x10y51mhg0anqfb1sar2"; depends=[Biostrings BSgenome IRanges seqLogo XVector]; }; +motifStack = derive { name="motifStack"; version="1.13.3"; sha256="08ddwy3yyydxaxs6qfh99va3v7xx57kq1pizqknxaar0p79x278w"; depends=[ade4 Biostrings grImport MotIV scales XML]; }; +msa = derive { name="msa"; version="1.1.1"; sha256="0nqgx1zb3n8kk2l3dgilsamwzadnddif39q5br7qs9xl38hag4nr"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; +msmsEDA = derive { name="msmsEDA"; version="1.7.0"; sha256="1hywj0vvrqq1zg62gr1rk4sblm201hgwz5kd78819apw5jf50fwd"; depends=[gplots MASS MSnbase RColorBrewer]; }; +msmsTests = derive { name="msmsTests"; version="1.7.0"; sha256="1qvi91shpy02irppq6g6lq43sp3rk2j7n1nfnm2p9767rdhbj13b"; depends=[edgeR msmsEDA MSnbase qvalue]; }; +mtbls2 = derive { name="mtbls2"; version="0.99.8"; sha256="0x5slfyn6gq5bhvpi820g93q2xzs8hb3s5yw4inpra0wpdmnvmkz"; depends=[]; }; +multiscan = derive { name="multiscan"; version="1.29.0"; sha256="0rp1nc8vjr8b0v9bcwrnsvdfklan0zc2cilrmwz1ikz0k5gnc0sq"; depends=[Biobase]; }; +multtest = derive { name="multtest"; version="2.25.1"; sha256="07ywm87prs1lyndwdsccswfhfz28ahasalwhn95vdkk50r7d3drf"; depends=[Biobase BiocGenerics MASS survival]; }; +muscle = derive { name="muscle"; version="3.11.0"; sha256="1s3apdcd0qj08bswn7smj7b93yv9qar7wrzyfkp5z3m16jgz979x"; depends=[Biostrings]; }; +mvGST = derive { name="mvGST"; version="1.3.0"; sha256="1chskyx9hgymxg57p6y98rw743lapssx18axvl0r9f2zsmmfz9bn"; depends=[annotate AnnotationDbi GOstats gProfileR graph Rgraphviz stringr topGO]; }; +mygene = derive { name="mygene"; version="1.4.0"; sha256="1f1nqf2h679z6j9pshc393qygdygs3s4spz2n7iwr56aqkbnccf6"; depends=[GenomicFeatures Hmisc httr jsonlite S4Vectors sqldf]; }; +mzID = derive { name="mzID"; version="1.7.0"; sha256="0gkkyxb7zk0c8ynddxxv7bym2lzpn8yn1ww6xf9bp9ax1zc021wk"; depends=[doParallel foreach iterators plyr XML]; }; +mzR = derive { name="mzR"; version="2.3.1"; sha256="19piyqgdxpi777nd4860d6mp0g4zzcf3wf7q7ilm99jqav9lfrn8"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; +ncdfFlow = derive { name="ncdfFlow"; version="2.15.2"; sha256="0s65c26r6q8di73iwpkrx4g3d9dy6v18vna7yy7di5vsgy0phr9l"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; }; +neaGUI = derive { name="neaGUI"; version="1.7.0"; sha256="198b0vrr5qp66z4sccwy6rh8sjxpw3qjkdryygg1baxq91ra76p1"; depends=[hwriter]; }; +nem = derive { name="nem"; version="2.43.0"; sha256="1d357gh8binh0fwg1z0mzjzq3nyhazg9dnnf7aqk6gjfgsjda9i8"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; +netbenchmark = derive { name="netbenchmark"; version="1.1.6"; sha256="07q5a9kxq5r0ch32q68vxb4gxl6r5zhw6d06b8c89h42cby2qdfp"; depends=[c3net GeneNet minet PCIT pracma randomForest Rcpp]; }; +netbiov = derive { name="netbiov"; version="1.3.0"; sha256="0d6xc74ivzvi0n9ndfgc0m9y79mwdbs344lxv9nps4igd7aaxh34"; depends=[igraph]; }; +nethet = derive { name="nethet"; version="1.1.0"; sha256="1xklqhwfmv1sk5h3x2g1jjbl5higrzhfj0mvap15vr2agax5hbg5"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; +netresponse = derive { name="netresponse"; version="1.19.0"; sha256="0blgcfbhwns4khnsd3m2yafmihr63kh3zsf7imphim0cdrx67xks"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape Rgraphviz]; }; +networkBMA = derive { name="networkBMA"; version="1.11.0"; sha256="09wf696s8n30nnadfds58flv8sv2gamgnw6pzz80isfc3178h1n6"; depends=[BMA Rcpp RcppArmadillo RcppEigen]; }; +nnNorm = derive { name="nnNorm"; version="2.33.0"; sha256="1ml2z7cds83ff8fpmagfmymnqg66r2jgi32r840c87gk2vakakrm"; depends=[marray nnet]; }; +nondetects = derive { name="nondetects"; version="1.5.0"; sha256="0178ci017kxgpbgjgkgzpjcw1qyz5ajx8qv9pbv76airwkhbharf"; depends=[Biobase HTqPCR]; }; +npGSEA = derive { name="npGSEA"; version="1.5.1"; sha256="0yh0cj6sj4r8sqv8xszpzws9sdxf7xji6sw0vrn6yn6zfmfjkib0"; depends=[Biobase BiocGenerics GSEABase]; }; +nucleR = derive { name="nucleR"; version="2.1.0"; sha256="0w9hmrahbk14gijv1ngps70m5f9lijbqr1lgpdbrjcqn7ff96yrq"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; +nudge = derive { name="nudge"; version="1.35.0"; sha256="1135k3nz8613vrib7fxmn669f31h5k1szy0r20qwmji28806arrk"; depends=[]; }; +occugene = derive { name="occugene"; version="1.29.0"; sha256="1vlm93r8xxp4dl8yv3hcg618vc5s7wbn7kcw4qpk8kyqaqcjqw2r"; depends=[]; }; +oligo = derive { name="oligo"; version="1.33.0"; sha256="0110j0lv1n1m81z3lvyqb5y0zzjda34i5xb5rm0n1s641f5cw82v"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; +oligoClasses = derive { name="oligoClasses"; version="1.31.1"; sha256="0likyfm4xq6s34l9pj7n3my04zrfvrhrcwd1ydbg7jpss2piy4lm"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; +omicade4 = derive { name="omicade4"; version="1.9.3"; sha256="00dr419qd563d75srypc02j6m5v281995mrh0r6fylz5bmi9bbks"; depends=[ade4 made4]; }; +oneChannelGUI = derive { name="oneChannelGUI"; version="1.35.0"; sha256="1diclgl4zkzzyz705cyqx983bw4zqw03rx7fn9515w0ifl0bk1r4"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; }; +ontoCAT = derive { name="ontoCAT"; version="1.21.0"; sha256="10d0a0fxg2h9gf6d1jbilxxg8irbqb1k526689qkdn2zh0qjvv04"; depends=[rJava]; }; +openCyto = derive { name="openCyto"; version="1.7.0"; sha256="11hhgxfwl6z7s6dzvr9bs3px21mwwv0b203snv6xgzan4wh11iyw"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; +oposSOM = derive { name="oposSOM"; version="1.5.1"; sha256="055ya0xvld0c7sl0s9cz7zmpw3ayqbskbya730cskzw5nz104lpg"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; }; +pRoloc = derive { name="pRoloc"; version="1.9.2"; sha256="1q9xaxz8if6ihs5a3ihbk2ayil1fxs8s34ij7gw7sv8hy6pvpm9s"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; +pRolocGUI = derive { name="pRolocGUI"; version="1.3.0"; sha256="1k7r8fhj4fqizk1w76mfcdd9sj3y7vxiq3kzfrkbk674gl1jsgmq"; depends=[MSnbase pRoloc shiny]; }; +paircompviz = derive { name="paircompviz"; version="1.7.0"; sha256="0sf80ji20q6kaqw2747an9b51xxwhl55yj5y7q6j68gif1ndkzl4"; depends=[Rgraphviz]; }; +pandaR = derive { name="pandaR"; version="1.1.0"; sha256="03aa0s1mifq5hyg4xshbjqz9javphgb11135zvfg8cqdq34dzg4m"; depends=[]; }; +panp = derive { name="panp"; version="1.39.0"; sha256="163yii12bhw0skzhwrjbavpsgsl2aygj8x9cilzj9pqsqakvinna"; depends=[affy Biobase]; }; +parglms = derive { name="parglms"; version="1.1.0"; sha256="1msk5ygl030rczm10rp9xnb461cbzcs7qqk6jqk8xhv5dycnwnbd"; depends=[BatchJobs BiocGenerics BiocParallel]; }; +parody = derive { name="parody"; version="1.27.0"; sha256="06lrzix8ydc41siy21fqkf3z6krj07p5v38pzan8jzzhqpwlq4iz"; depends=[]; }; +pathRender = derive { name="pathRender"; version="1.37.0"; sha256="0iw7gsbjccazz1pip75czrzxrnmmw8iyzkzxwz6yc7p23y68xlgd"; depends=[AnnotationDbi graph RColorBrewer Rgraphviz]; }; +pathifier = derive { name="pathifier"; version="1.7.0"; sha256="1zfhs2qkl20ryfp6zq6xrbavdgcfgw27b50pjx8p5maqx21qcgyh"; depends=[princurve R_oo]; }; +pathview = derive { name="pathview"; version="1.9.0"; sha256="0bajyh3ikaw87bpp6i04pmq440vy2rjjwjg1gp2bzml4rpwi2sz4"; depends=[AnnotationDbi graph KEGGgraph KEGGREST png Rgraphviz]; }; +paxtoolsr = derive { name="paxtoolsr"; version="1.3.1"; sha256="0pv4zcl12yxidiy3wd0kc10p5n561348fbvdpzhjdz12gjdr3j41"; depends=[plyr RCurl rJava rjson XML]; }; +pcaGoPromoter = derive { name="pcaGoPromoter"; version="1.13.1"; sha256="0a1yfi16sadp5fj112mlq9har0yggp8amn8v4v18jzfrb8aiacsj"; depends=[AnnotationDbi Biostrings ellipse]; }; +pcaMethods = derive { name="pcaMethods"; version="1.59.0"; sha256="12b8qdd38xgpzisz0lm9xkwq22z5ciq7b8i11z3na1wynvim3nll"; depends=[Biobase BiocGenerics MASS Rcpp]; }; +pcot2 = derive { name="pcot2"; version="1.37.0"; sha256="023ly5jgq8zc7k73mfqvra13mask54l7f62dznjh1dcjpv6xgw4p"; depends=[amap Biobase]; }; +pdInfoBuilder = derive { name="pdInfoBuilder"; version="1.33.1"; sha256="1vyw3ggh247km4qag1gy3wz9v338na4hlxmqz57mv51gp7fw6v1l"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; +pdmclass = derive { name="pdmclass"; version="1.41.0"; sha256="0361s7d6n9wn65pxks3alr8ycqjcgv9dvvb2n9xqiqawyki1nvpm"; depends=[Biobase mda]; }; +pepStat = derive { name="pepStat"; version="1.3.0"; sha256="003gqcs5m5b8mil9r1ydadhcc086nqmdk6i1xz4kkdpkcyxbyz7p"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; +pepXMLTab = derive { name="pepXMLTab"; version="1.3.0"; sha256="0rbcj59vsbq8zqxq4h1v077jgpz7l607zalc4lhw9yn8l5lij4j8"; depends=[XML]; }; +phenoDist = derive { name="phenoDist"; version="1.17.0"; sha256="1dn5s6dfh4x5xqp336a12vrqrk1gqdxp5k3yinnshxnq4iy5x8m9"; depends=[e1071 imageHTS]; }; +phenoTest = derive { name="phenoTest"; version="1.17.0"; sha256="09192i8zsamcd1s31w2w0ipr6ms8n0dznpdy83j0d280c5mmb20y"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; +phyloseq = derive { name="phyloseq"; version="1.13.2"; sha256="127n0smsgfgwb7by3hkagfhj8wn7xz5l73lf1vxmbzx8pal5lzni"; depends=[ade4 ape BiocGenerics biom Biostrings cluster data_table DESeq2 foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; +piano = derive { name="piano"; version="1.9.4"; sha256="1gj5ka0kjyvzxvsr84bs9z1ia3glsq57b1k820lp5qhswapzmgps"; depends=[Biobase BiocGenerics gplots igraph marray relations]; }; +pickgene = derive { name="pickgene"; version="1.41.0"; sha256="0gy0zzd00gn91gmxszdk1jsrglxknpxb7n957fw3rxy0zkbnbyzd"; depends=[MASS]; }; +pint = derive { name="pint"; version="1.19.0"; sha256="0gl9yafqxjj8ndlcfvhmksbmcr7wmrb0p5c5pn293xsivfw590b7"; depends=[dmt Matrix mvtnorm]; }; +pkgDepTools = derive { name="pkgDepTools"; version="1.35.0"; sha256="1z8aznll9a61n9a20fh1lkcg58ml1vk8kaw3id5jr7m55hl6gwrg"; depends=[graph RBGL]; }; +plateCore = derive { name="plateCore"; version="1.27.0"; sha256="10br9gx4z41n63b36jc7ifjd7glj82lahrvfsprvrwl8c0xh5ii4"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; +plethy = derive { name="plethy"; version="1.7.0"; sha256="1ll6p7iji4gwjirj6w04zzb7c5kpyqhp3q9cnjixrzd4x3h3a8hz"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; +plgem = derive { name="plgem"; version="1.41.0"; sha256="0gs4sawmvcfykdybmjk4sm4xizbldj7jp34zgs2zn42kr2xllz6k"; depends=[Biobase MASS]; }; +plier = derive { name="plier"; version="1.39.0"; sha256="0ws919mrm8q719ssmxsxb4mqrq5ffhg81amkiw1s4pymqv5292z5"; depends=[affy Biobase]; }; +plrs = derive { name="plrs"; version="1.9.0"; sha256="1lwnzbq2f75zh191g8zjljajq1qypvi2abzjsq5vfyqr3jnzpah8"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; +plw = derive { name="plw"; version="1.29.0"; sha256="0rc31452gnzxxz5rwg932i680xx8azdvailn4id6fnkr5xqr1d5a"; depends=[affy MASS]; }; +pmm = derive { name="pmm"; version="1.1.0"; sha256="05vix8j0rpvnyfkdb043d24vrbpdvkjmb8cqpqbg0knja178c8cg"; depends=[lme4]; }; +podkat = derive { name="podkat"; version="1.1.2"; sha256="1jqb55mnys66grhkx9d5yzf4c6x1vb0g0arfibv7ayzlsgw1cwxx"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; +polyester = derive { name="polyester"; version="1.5.0"; sha256="1qpnabv5c7wi1qw8lp3nvnv4dass7g6chz6blyg3k572p0zhzm47"; depends=[Biostrings IRanges limma logspline S4Vectors]; }; +ppiStats = derive { name="ppiStats"; version="1.35.0"; sha256="10c3lnipwnpg0j938c1hxz1qgysc4n56lmsw7n6cra57zkr0whxj"; depends=[Biobase Category graph lattice RColorBrewer ScISI]; }; +prada = derive { name="prada"; version="1.45.0"; sha256="140fv2yrgdf9ab26k14n0l6yd03vidi5y3dn4d1ybkyc66rx8xpa"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; +prebs = derive { name="prebs"; version="1.9.2"; sha256="0vwnxnxy0v03mx7lc5avkhy5706nm3scf237nbrwxrpr9598y9r0"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; +predictionet = derive { name="predictionet"; version="1.15.0"; sha256="19ikg3kzy6h0n4x3hp13n2f9g3qmgvvi700w1wiah0m4pm1xfhw1"; depends=[catnet igraph MASS penalized RBGL]; }; +preprocessCore = derive { name="preprocessCore"; version="1.31.0"; sha256="1hm8066i4cxwiqqp5d9dx2dh5m5mrj7gpc3v06rhyk34mq2xkppc"; depends=[]; }; +proBAMr = derive { name="proBAMr"; version="1.3.1"; sha256="0nz9imskb1dmf3i55vpk8ik406s60x80n9ds7nc67zg2xc62fw6v"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; +procoil = derive { name="procoil"; version="1.19.0"; sha256="1jada5s60ir29dggixxma7m5amr3lbc11n8xxdnscx934zb428rz"; depends=[]; }; +prot2D = derive { name="prot2D"; version="1.7.0"; sha256="0cpksbs1d8g8v1hdqfshj9imj55w4vlixnawvhlrpb7fj52izz4q"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; +proteinProfiles = derive { name="proteinProfiles"; version="1.9.1"; sha256="14gl7hfahmjfw7v9vjfbwb041dkpp7ykjckr64naphxk3nkijbc0"; depends=[]; }; +proteoQC = derive { name="proteoQC"; version="1.5.0"; sha256="1khhy7y1w8pyccc3x18m497lh6a3kv7cyd3np04qwg277c3lqvas"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; }; +puma = derive { name="puma"; version="3.11.0"; sha256="1dgi08p70fifsa42gj4jd1651d8laq03fa52qvicsmwkjxxyd83w"; depends=[affy affyio Biobase mclust oligo]; }; +pvac = derive { name="pvac"; version="1.17.0"; sha256="0r9p96lp15883xix9gbr36pcjy7zg8yniag257mps58xagld0162"; depends=[affy Biobase]; }; +pvca = derive { name="pvca"; version="1.9.0"; sha256="1xi72iwarx3784l5hjf7vmwindsz4fbah5g9y2a2fllr5mjh421b"; depends=[Biobase lme4 Matrix vsn]; }; +pwOmics = derive { name="pwOmics"; version="1.1.7"; sha256="1750jxrdb801ipzkr8y2zkgr79bzxxzsnyvcj4jamifljv49gz5c"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; }; +qcmetrics = derive { name="qcmetrics"; version="1.7.0"; sha256="1qrhl7w131yzkvck9ifqf966lmh8f9y9xlmrg2g3dgh29vgww54b"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; +qpcrNorm = derive { name="qpcrNorm"; version="1.27.0"; sha256="0lmk9ksfrrw8zvhq20kg3kv0aqr8wx342nmw7zxvjv7l8z3d33sf"; depends=[affy Biobase limma]; }; +qpgraph = derive { name="qpgraph"; version="2.3.3"; sha256="1ykijxsg8yc3d1k9ip0p0zqrv75l9ps6q7h1naqw9sjhk6nqwf0g"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; +qrqc = derive { name="qrqc"; version="1.23.0"; sha256="15kphqzml54zaadbdssna6krfgm28f7h8cmvq78hfzi303wqsi5j"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; +quantro = derive { name="quantro"; version="1.3.0"; sha256="155yqm48yc447mimcqxc6f27d5jcd6j9a069x1d2djx7xn3af76b"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; +quantsmooth = derive { name="quantsmooth"; version="1.35.0"; sha256="03z3q8zmaap6bd0mgm7hdj7rn929cfam8ajlxdy91nvyj6033lf5"; depends=[quantreg]; }; +qusage = derive { name="qusage"; version="1.9.0"; sha256="1dg8qchhqfvak5cqjs9v30bh0hpi449biv27wc8y8f6292xqb6jk"; depends=[Biobase limma]; }; +qvalue = derive { name="qvalue"; version="2.1.0"; sha256="0qgsqjb90qnf5a77n3zf5dcb5agdbj4hlk3swh1hrjg9iqcs76g0"; depends=[ggplot2 reshape2]; }; +r3Cseq = derive { name="r3Cseq"; version="1.15.0"; sha256="0pi5aq3dbivk23x6axwbqa4danbsvn623icw6xvlh3i71v8m5rkw"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; +rBiopaxParser = derive { name="rBiopaxParser"; version="2.7.0"; sha256="1ni8kaivdxqxv8fj2qf5vnwzmmamfd073l1p4072pnfxpn7rn0p4"; depends=[data_table XML]; }; +rGADEM = derive { name="rGADEM"; version="2.17.0"; sha256="1xwypnpf7sdaqszfmallgg2314g866xbi9q342yhds2fkiw9sp65"; depends=[Biostrings BSgenome IRanges seqLogo]; }; +rGREAT = derive { name="rGREAT"; version="1.1.0"; sha256="1rd4cjwh4rrqgfg15k32br0iv15j99797z7lx7789wc1zxkpzvg3"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; +rHVDM = derive { name="rHVDM"; version="1.35.0"; sha256="0y2vm6xsdsz174xrs22p54z5f5rxqcx937yf02ilv0bnfa0r06hj"; depends=[affy Biobase minpack_lm R2HTML]; }; +rMAT = derive { name="rMAT"; version="3.19.0"; sha256="0nhmf1hbiqwzb9035405f8asnhh2ywj4bm9wdlgbafyhiw6qik98"; depends=[affxparser Biobase BiocGenerics IRanges]; }; +rRDP = derive { name="rRDP"; version="1.3.0"; sha256="0q373nfs4ynjnmq9rp0c0ficnnylwb2gf1j0bzlnxcd2cwz215zv"; depends=[Biostrings]; }; +rSFFreader = derive { name="rSFFreader"; version="0.17.1"; sha256="105qlrjq4777k4ps2h7gmr2ywix9skrylhg4ds3dw0pi6n9a4w8n"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; +rTANDEM = derive { name="rTANDEM"; version="1.9.0"; sha256="08r73kv83w8rfglbqf2zvczj4yix7sfhvrz93wk22nry04jfgccr"; depends=[data_table Rcpp XML]; }; +rTRM = derive { name="rTRM"; version="1.7.0"; sha256="0lqzxcgz36dsvqlx218cc9h785vw3czxsq93z388adraw7i0r55x"; depends=[AnnotationDbi igraph RSQLite]; }; +rTRMui = derive { name="rTRMui"; version="1.7.0"; sha256="132cm40hxhb4apdidifbw90jyxhlz0dqxgqsr6awv8q6dy9jpfw4"; depends=[MotifDb rTRM shiny]; }; +rain = derive { name="rain"; version="1.3.0"; sha256="0ak8wbhsglnylzy1jzh9hb2yxqjzmspvj98x10vf3qmgbqc30i4y"; depends=[gmp multtest]; }; +rama = derive { name="rama"; version="1.43.0"; sha256="1siqzb0b9j51b06aijz85xn6c9v4dqvcw7scmrlfpf18dihqaig1"; depends=[]; }; +randPack = derive { name="randPack"; version="1.15.0"; sha256="0m9729h3fia15rcgxznz4hmlz7abz8xkbn1ffc3l8qhqks5j50f7"; depends=[Biobase]; }; +rbsurv = derive { name="rbsurv"; version="2.27.0"; sha256="1v97vrralg445zn8s3km7vmhlxhkv8bdwcj90fyvd6kfk7gm4xc7"; depends=[Biobase survival]; }; +rcellminer = derive { name="rcellminer"; version="1.1.1"; sha256="04ddqp6kxsdhanp7xfifhcvm8hirb915wl15m2qzwx5xy4l97vry"; depends=[Biobase fingerprint gplots rcdk shiny stringr]; }; +reb = derive { name="reb"; version="1.47.0"; sha256="1lxl4mzfz9b7hmq4fd7bsplxmknb8a3ffwdpddik3wry8rpqzmsd"; depends=[Biobase idiogram]; }; +regionReport = derive { name="regionReport"; version="1.3.4"; sha256="0n5l83izk4xr59f1npp1rwhghn4g19yy8wn2h7q2pb4hwdqa3sfd"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; }; +regioneR = derive { name="regioneR"; version="1.1.1"; sha256="1wylrkqiv5lc9rw3mc1by88ckx437jwhlgyg5kasvpry003rm72c"; depends=[BSgenome GenomicRanges memoise rtracklayer]; }; +rfPred = derive { name="rfPred"; version="1.7.0"; sha256="0k1z7bqdjmm668kipz8c74kd9k1vw2pcjbirxdi88clrclz3i47y"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; +rgsepd = derive { name="rgsepd"; version="1.1.0"; sha256="1rvzlzh43j3sj2vrhmg13hl4wq3bg9hml3xq2dpx28lapynywm41"; depends=[AnnotationDbi biomaRt DESeq2 GenomicRanges goseq gplots hash]; }; +rhdf5 = derive { name="rhdf5"; version="2.13.1"; sha256="01ldm91wq6klcs2djpy95m5gvspql2b35q51ba9p5017h3brvrqm"; depends=[zlibbioc]; }; +riboSeqR = derive { name="riboSeqR"; version="1.3.0"; sha256="0jlh5q1hkxkfvy496hlbwfkl17k36n304yiyz9f0azq5kv7jz1y2"; depends=[abind GenomicRanges]; }; +rnaSeqMap = derive { name="rnaSeqMap"; version="2.27.0"; sha256="1638vikgizcgg4bpfm61ak98smwy74dk5hyx73qjbisd49zvy5nk"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; +roar = derive { name="roar"; version="1.5.1"; sha256="1r4m95lw27rrdzfxi52llx50i3vm7k7br198k573ycmm6p941fwk"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; +rols = derive { name="rols"; version="1.11.2"; sha256="0mzw65knb7y41zamvnx2j3pl10b48y6xb4ajc7297dgf23v8bxms"; depends=[Biobase XML]; }; +rpx = derive { name="rpx"; version="1.5.0"; sha256="1348x8jzc0bjxhyzi5yjrhx0v8jxd3x7slidjzi924aqbnn7shs0"; depends=[RCurl XML]; }; +rqubic = derive { name="rqubic"; version="1.15.0"; sha256="19n613m7x48wkrfrhnd0ab9018m5dd7rf08qjbgphakwycssfgcw"; depends=[biclust Biobase BiocGenerics]; }; +rsbml = derive { name="rsbml"; version="2.27.0"; sha256="10qmv5gpgqffnr5wqh7zik0l2d1cg0c0m3xak4r4bqmsd1y4dw01"; depends=[BiocGenerics graph]; }; +rtracklayer = derive { name="rtracklayer"; version="1.29.10"; sha256="04p3hpxf5jnyfjh5pign7r4k47pzl9m0g84cq93p8cb2jgywc97a"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; +sRAP = derive { name="sRAP"; version="1.9.0"; sha256="0rvnq41gns4ccr6gnfw0xbbi2c2wjl14qh0yr7wj7s4yrxzqr866"; depends=[gplots pls qvalue ROCR WriteXLS]; }; +sSeq = derive { name="sSeq"; version="1.7.0"; sha256="0wcw77cz47wklwsrwwimwryqmyc0lrd9mk2aawk0vx1zkqci1yca"; depends=[caTools RColorBrewer]; }; +safe = derive { name="safe"; version="3.9.0"; sha256="0x1gdzpgrm4m2m64h6y5rayp64j6ckxlr081d3w46zvfb935294a"; depends=[AnnotationDbi Biobase SparseM]; }; +sagenhaft = derive { name="sagenhaft"; version="1.39.0"; sha256="1jr4pi4qz5sapigx5lwrvaw2cjbm03hpisc0kf20id8q8sg4wqqw"; depends=[SparseM]; }; +sangerseqR = derive { name="sangerseqR"; version="1.5.0"; sha256="0wiqaqzn6n63k1389nqj35k5wn93bq7c99gayblwjrhks0y9fll0"; depends=[Biostrings shiny]; }; +sapFinder = derive { name="sapFinder"; version="1.7.0"; sha256="1xg3scw5ijm1z2l4ha4ik52s97vr10plr9ifs9rdk2l6vh8na6kh"; depends=[pheatmap Rcpp rTANDEM]; }; +saps = derive { name="saps"; version="2.1.0"; sha256="0r6525n8ksxaa5dcvs9419bca1v369251psvwphfsdnfa4xg2n14"; depends=[piano reshape2 survcomp survival]; }; +savR = derive { name="savR"; version="1.7.3"; sha256="0jm5fc4zf4iqdq2qzzigal5r69mllzdx578ixxb9c3hxi55161mc"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; +scsR = derive { name="scsR"; version="1.5.0"; sha256="1n9clp1ldspxbrv4chihv1xhw2fmys13p884cmn037xhwv5b7j3r"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; +segmentSeq = derive { name="segmentSeq"; version="2.3.1"; sha256="005b9a7rhhhcpkac8xyvl9lbzgwjbfpqr49wyn0i9j99v9zw1lfv"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; }; +seq2pathway = derive { name="seq2pathway"; version="1.1.2"; sha256="1ghanxmfs99h8w2fxn6im3ml7brhhx131k7djbvsm695lvxgqm7a"; depends=[biomaRt GenomicRanges GSA nnet WGCNA]; }; +seqCNA = derive { name="seqCNA"; version="1.15.0"; sha256="171292r5fwvvnwk4ajsxd43j92v2pn9n7aplvzcqxc4z43gvicss"; depends=[adehabitatLT doSNOW GLAD]; }; +seqLogo = derive { name="seqLogo"; version="1.35.0"; sha256="1fwg6v536kqgmmjfk3cixy4s5chyp74drq8bj14ap8pzpfivisi1"; depends=[]; }; +seqPattern = derive { name="seqPattern"; version="1.1.1"; sha256="0lshbskj928c2n7gi6kf22id6rarmbby5ffrlxir0zihh7g7yfxz"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; +seqTools = derive { name="seqTools"; version="1.3.0"; sha256="17n8mz93jx7ggf6w3hm92r9mb224w2spwsyr85amny6x8xrxr7k7"; depends=[zlibbioc]; }; +seqbias = derive { name="seqbias"; version="1.17.0"; sha256="02zlj9nmwhjjmbfw499pf1szpair7ahbijvf6ci30z2g805l1qsk"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; +seqplots = derive { name="seqplots"; version="1.5.1"; sha256="0xwhrln6bmsfv4rrnnr8mih2dvchxxv7kxdj9mwmwrnsh9ghk4qr"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix reshape2 RSQLite rtracklayer S4Vectors shiny]; }; +shinyMethyl = derive { name="shinyMethyl"; version="1.3.0"; sha256="03wfpaprrg6czkik0xxwq7hkwgdqm3z7frl6vpcq333chnv3nl5z"; depends=[BiocGenerics matrixStats minfi RColorBrewer shiny]; }; +shinyTANDEM = derive { name="shinyTANDEM"; version="1.7.0"; sha256="18fl4kjwhbxnnhifa9kxz6j73pri0kfw08mgrryzdpqbd2p7x70y"; depends=[mixtools rTANDEM shiny xtable]; }; +sigPathway = derive { name="sigPathway"; version="1.37.0"; sha256="1gkkpgibj3snpzs33c4k09b7q029s3jjch7slx7ljaqhdzldbpw4"; depends=[]; }; +sigaR = derive { name="sigaR"; version="1.13.0"; sha256="0gfimhsmkrg78apasn3x7gw8vz9rcnc8flnnybplv6mgjwdgyqml"; depends=[Biobase CGHbase corpcor igraph marray MASS mvtnorm penalized quadprog snowfall]; }; +siggenes = derive { name="siggenes"; version="1.43.0"; sha256="15l5h1shmva4lh9n8n9i1hfap1bh03vlz98bpcz842b7qczhn1v8"; depends=[Biobase multtest]; }; +sigsquared = derive { name="sigsquared"; version="1.1.0"; sha256="010fsh2il81rg8k8yh5kms5rpqs379s74r52m69v3cf3pnhjxn2p"; depends=[Biobase survival]; }; +similaRpeak = derive { name="similaRpeak"; version="1.1.0"; sha256="0aq18iwxxapbgnjcjqyig20i58sbbjq1dfrbsmbfdh9i4fs1403w"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; }; +simpleaffy = derive { name="simpleaffy"; version="2.45.0"; sha256="00fzbq82r9n1mfqh9f51z11a7qc2idms3hc95id1ggkjkqn5ljf8"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; +simulatorZ = derive { name="simulatorZ"; version="1.3.5"; sha256="0rhpljx59n0klajz661ygx9a2xy4sdaxlgz6kqhdjvg7k53kr6z7"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; +sincell = derive { name="sincell"; version="1.1.01"; sha256="1fkpdinh38xqx2d8dn0g5cxkfw0gfl1ddp6r5bc7ckdsvl692b5f"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; +sizepower = derive { name="sizepower"; version="1.39.0"; sha256="1xw2r7m2hlg9r5i20nilkdf7gg3naznhl26xk19w2hyjlp84b8xp"; depends=[]; }; +skewr = derive { name="skewr"; version="1.1.0"; sha256="1dd7vn4d7zffvmy1ic139qc5rp647wyw4jqlyy6kc2vil0w8368q"; depends=[IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; }; +snapCGH = derive { name="snapCGH"; version="1.39.0"; sha256="11xdijl28mn7znjdv1qgj5z5hhf7xnnpg79pnxr5kj17b06w5509"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; +snm = derive { name="snm"; version="1.17.0"; sha256="0ckn29nymlml8ldxqq5la1h3bwm2h2c2zcr2sjs5plxl2fga4a0l"; depends=[corpcor lme4]; }; +snpStats = derive { name="snpStats"; version="1.19.0"; sha256="0m42vqjsqh2bjkn5vd5hm4q5r0pi9znxi2qzxxh0c9iai8wjjsca"; depends=[BiocGenerics Matrix survival zlibbioc]; }; +soGGi = derive { name="soGGi"; version="1.1.1"; sha256="17kq195xgsfq5fxvkyfxhkx1rcx4wp0115043snmxhp0vfpp36qv"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; +spade = derive { name="spade"; version="1.17.0"; sha256="02ba8ybgcldjmfsxywb0q7drm5nyhg6i72brvbrcgsq2ni0b7cpf"; depends=[Biobase flowCore igraph Rclusterpp]; }; +specL = derive { name="specL"; version="1.3.3"; sha256="17067na171pn55w7znyhrn9bcibjpk7spvdw5l6gzrr5slh49qg8"; depends=[DBI protViz Rcpp RSQLite seqinr]; }; +spikeLI = derive { name="spikeLI"; version="2.29.0"; sha256="1f7in8zcbdz9i1cqdhvdcjl6g71vhz9hgd8whc0x9nf12qa87l7p"; depends=[]; }; +spkTools = derive { name="spkTools"; version="1.25.0"; sha256="1a260c41jxg0yi2li1159pdp8dqbrxgvda88047k5pjrpzwg0738"; depends=[Biobase gtools RColorBrewer]; }; +spliceR = derive { name="spliceR"; version="1.11.0"; sha256="0zfvbnlslpav4kz385sa5h1v73wrzirahxc6fx752zvn4kqbxdkj"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; }; +spliceSites = derive { name="spliceSites"; version="1.7.0"; sha256="09av779v8dznw77xss3wfl4gwy8knspb20ggvayjd5b0jxmip4n5"; depends=[Biobase BiocGenerics Biostrings doBy rbamtools refGenome seqLogo]; }; +splicegear = derive { name="splicegear"; version="1.41.0"; sha256="0bnwkr42fg3hb2rwkq01g6jvjx9p5bmdizcf1bhff2apr7bk8188"; depends=[annotate Biobase XML]; }; +splots = derive { name="splots"; version="1.35.0"; sha256="1zc8k0599wjzyvgh01lzk89v01985h3wh8vznsxawn9b07mydjsv"; depends=[RColorBrewer]; }; +spotSegmentation = derive { name="spotSegmentation"; version="1.43.0"; sha256="1y6ydlc6yn4hi66v7pgsa18kxarq8i164wzp440dxd54baqpq3ps"; depends=[mclust]; }; +sscore = derive { name="sscore"; version="1.41.0"; sha256="15hj8wdvafk4kqiy370m95c188jw15aqxs7fjsx03z01kdnqs2xd"; depends=[affy affyio]; }; +ssize = derive { name="ssize"; version="1.43.0"; sha256="144jgm68x0r5wrcg0bisrgxcrk9ckkj117rn7c19kvz8874bbir5"; depends=[gdata xtable]; }; +ssviz = derive { name="ssviz"; version="1.3.0"; sha256="1sl181mq7qsibn6f51mp8srl6zzrmpz69rjgbx00h57b5i8frv7b"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; +staRank = derive { name="staRank"; version="1.11.0"; sha256="0hi3nzm0bdqrgjqjfvgz0qwymdrsd2c4csndw85hw9dj5ml1czqd"; depends=[cellHTS2]; }; +stepNorm = derive { name="stepNorm"; version="1.41.0"; sha256="05g9qgxwfahyfq97pz3xmg49y7ml93w8n5hs5fv6f60l1nz59va1"; depends=[marray MASS]; }; +stepwiseCM = derive { name="stepwiseCM"; version="1.15.0"; sha256="0r0ca29xpzki7lpr91rf99a1dvc5lmyls2v22pd1nxq4fb3g265l"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; }; +supraHex = derive { name="supraHex"; version="1.7.1"; sha256="02jv0mb17d79031b6a8sam0710a0njm2akkcj4bji40bx0bkqsna"; depends=[ape hexbin MASS]; }; +survcomp = derive { name="survcomp"; version="1.19.0"; sha256="1czy90l49f0c31kh9p461wkdxb1iih64pvpbz31wv0mhyi2633i5"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; +sva = derive { name="sva"; version="3.15.0"; sha256="0bskn3famgz24kjaz4lrrm94vw07g5d2103h9gh5qzhajdsc2d03"; depends=[genefilter mgcv]; }; +switchBox = derive { name="switchBox"; version="1.3.0"; sha256="0bnb1wqxl3rv8w5rm0jw3x22yy8q27j11hpqnd792fvsz8ssr5h1"; depends=[]; }; +synapter = derive { name="synapter"; version="1.11.0"; sha256="05gv788mx1bzizr07cg5cw98i4xm3qdh8hpys4xvr06as7q65h2g"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; }; +systemPipeR = derive { name="systemPipeR"; version="1.3.4"; sha256="16sn8svmxz9yfhhdl3kwq3hgk80rmirz2g4c8z8i9dib3i8i3sia"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; +tRanslatome = derive { name="tRanslatome"; version="1.7.0"; sha256="1pcr1ghwkmkpsbkqh85yninvgb2za2vdsnax5bjkdj60wfj0d5bc"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma plotrix RankProd samr sigPathway topGO]; }; +ternarynet = derive { name="ternarynet"; version="1.13.0"; sha256="13pnzzlfzgkvqn323xhjvbaqzrk2fjq440ff9hjf09a53g14q7li"; depends=[igraph]; }; +tigre = derive { name="tigre"; version="1.23.0"; sha256="177phidn72rcghb4mqfcr2wbfx5pz2vdw6jh7ahnki7s5q6fkldl"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; +tilingArray = derive { name="tilingArray"; version="1.47.0"; sha256="1l7ldbzzjxa60ivnlb18m53z54vjjfdxjp5jxnxwg46n423rs93x"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; +timecourse = derive { name="timecourse"; version="1.41.0"; sha256="1jpbjh4dg71zyhy8vghzqvmkg17aw7azdbhn101j8rdfsf90i8mx"; depends=[Biobase limma marray MASS]; }; +tkWidgets = derive { name="tkWidgets"; version="1.47.0"; sha256="08vhxl7bdhnx0vk8pkm4bxjy9jvg42wy8nhlp04fyjkylfs5d58r"; depends=[DynDoc widgetTools]; }; +topGO = derive { name="topGO"; version="2.21.0"; sha256="0hhglb4zqbjwqywn37h3klz7qgkypl2zmv1afibxjn70xc6wxq46"; depends=[AnnotationDbi Biobase BiocGenerics graph lattice SparseM]; }; +trackViewer = derive { name="trackViewer"; version="1.5.1"; sha256="16xjh6k1v1pp29g2x2n8ywaapf7wgj2l4klmmspa3f8gkzlmxgwz"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz gWidgetstcltk pbapply Rsamtools rtracklayer scales]; }; +tracktables = derive { name="tracktables"; version="1.3.0"; sha256="125z9b0rjvrrbg91bdzqrf3rrw0aajivpyxd1m9k1gcs6jmsaaj3"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; +triform = derive { name="triform"; version="1.11.2"; sha256="11vsg3ki9dyl8vpi1q1p0cilhnvz076lk55w6ld4k53sp2h3q0r4"; depends=[BiocGenerics IRanges yaml]; }; +trigger = derive { name="trigger"; version="1.15.0"; sha256="1gsvp2rvry8pg9wfl9rggjfjxd0dcq3lrfkygfsl4jqcwnankpvc"; depends=[corpcor qtl qvalue sva]; }; +trio = derive { name="trio"; version="3.7.1"; sha256="1g3q1pvqq2kp1vck9c7sj000inw5b7q0wvd14yr8096mm6ax8zka"; depends=[]; }; +triplex = derive { name="triplex"; version="1.9.0"; sha256="0a7pyazg2vmk8229x6lvvxcvplj07drqrlvn9cra5ckqhflm3san"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; +tspair = derive { name="tspair"; version="1.27.0"; sha256="0kx2iw2g0nji25qds5z6qh4wvia6gc14jnf7q08qcpqb0xg8s11x"; depends=[Biobase]; }; +tweeDEseq = derive { name="tweeDEseq"; version="1.15.0"; sha256="17mmkz0qpww2qwzk1vd5945wqpr59v091rlvn1s2013h248173vm"; depends=[cqn edgeR limma MASS]; }; +twilight = derive { name="twilight"; version="1.45.0"; sha256="0dzgapk34jzxhdadraq072fcj6rwqhkx2795rbn0dkk4vazqz4sn"; depends=[Biobase]; }; +unifiedWMWqPCR = derive { name="unifiedWMWqPCR"; version="1.5.0"; sha256="055yvgwqjh91cf8d2hsacnbzq2z9c911cy3qd206azqlr6qyjiip"; depends=[BiocGenerics HTqPCR]; }; +vbmp = derive { name="vbmp"; version="1.37.0"; sha256="1i4akvqrwj1r0ahi4vjxl7q780sa5bryj3rd2c5wg0ifd5l95h6s"; depends=[]; }; +viper = derive { name="viper"; version="1.5.1"; sha256="0494601adg93i5gwam73x4x3m7vfg25xly6v2gj4aclaq9v6fpyf"; depends=[Biobase e1071 KernSmooth mixtools]; }; +vsn = derive { name="vsn"; version="3.37.1"; sha256="0qya4csz1vhvshnzrml6d9fbxqrdp2ckh4f38izcbj53y3hhilf9"; depends=[affy Biobase lattice limma]; }; +vtpnet = derive { name="vtpnet"; version="0.9.0"; sha256="0gbs4pdwy88pjwsn3r2yspnfscz127awhlwym6g1lk8sxkb4mjxc"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; +wateRmelon = derive { name="wateRmelon"; version="1.9.0"; sha256="1lgadzv28j5qqqqsrjzakxmyj1q9j0hps3waa2nn9r7dq4cvallh"; depends=[limma lumi matrixStats methylumi ROC]; }; +wavClusteR = derive { name="wavClusteR"; version="2.3.1"; sha256="0cfh1jiyzs1fijp8p3f4vysvrm7xhrriqdyjrms81pldka4kfv6y"; depends=[Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer seqinr stringr wmtsa]; }; +waveTiling = derive { name="waveTiling"; version="1.11.0"; sha256="0y1xfa2z1djcdj7q84szkij21v86mqia3zwyhvawwmqf9kznk3n7"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; +weaver = derive { name="weaver"; version="1.35.0"; sha256="010qw05wm66n0rwx8lz82kc064p40kqx5jb2nh99yqx14pah0v65"; depends=[codetools digest]; }; +webbioc = derive { name="webbioc"; version="1.41.1"; sha256="01nsfzlxwjlj435mghm5ch324w6l22lvr22h0v59mjyi5gspvxbi"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; +widgetTools = derive { name="widgetTools"; version="1.47.0"; sha256="134yq5qqxd0cpw4lm4k7gc1nq9cmlw7k2h4a93b32s75fa0mmnv7"; depends=[]; }; +xcms = derive { name="xcms"; version="1.45.6"; sha256="174az64bjhkq483zmpycwi28brabracc3478p9a7892yjg9rkiw5"; depends=[Biobase BiocGenerics lattice mzR ProtGenerics RColorBrewer]; }; +xmapbridge = derive { name="xmapbridge"; version="1.27.0"; sha256="1lmsbmhim1v20j1v9iry5ridvh2dzdvz082wj2r68j68ilcz08gr"; depends=[]; }; +xps = derive { name="xps"; version="1.29.0"; sha256="1m0rabnxwzm6hjfvr38r19c49jri91fgvwpghg5718qmk5hsfac1"; depends=[]; }; +yaqcaffy = derive { name="yaqcaffy"; version="1.29.1"; sha256="13hxgs8qm4z0h8mywxabij4q7fqd188wwcs2zfavna8q4cysf783"; depends=[simpleaffy]; }; +zlibbioc = derive { name="zlibbioc"; version="1.15.0"; sha256="1dh5i3r74fy2q5jf31gsy40l3xzig2xqrpligji7aq8r2k4dchqv"; depends=[]; }; +} diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 79770b6a620a..7ccca09742b6 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -1,204 +1,209 @@ -# This file is generated from generate-cran-packages.R. DO NOT EDIT. +# This file is generated from generate-r-packages.R. DO NOT EDIT. # Execute the following command to update the file. # -# Rscript generate-cran-packages.R > cran-packages.nix +# Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: with self; { -A3 = derive { name="A3"; version="0.9.2"; sha256="01s7znhph2mr3snpscci3y7nbcisa6kg6hy7im3742r6ah0z3jv7"; depends=[xtable pbapply]; }; -ABCExtremes = derive { name="ABCExtremes"; version="1.0"; sha256="032bc9a6cxy4war95n8v4vaax3q96k2wryjbcipi3z55b2l8hdny"; depends=[SpatialExtremes combinat]; }; -ABCanalysis = derive { name="ABCanalysis"; version="1.0.1"; sha256="1q1ms76nzg93sf71r0v3d3yx3a8agpccndlv9lz49cr6asa9iwl0"; depends=[Hmisc plotrix]; }; +A3 = derive { name="A3"; version="0.9.2"; sha256="01s7znhph2mr3snpscci3y7nbcisa6kg6hy7im3742r6ah0z3jv7"; depends=[pbapply xtable]; }; +ABCExtremes = derive { name="ABCExtremes"; version="1.0"; sha256="032bc9a6cxy4war95n8v4vaax3q96k2wryjbcipi3z55b2l8hdny"; depends=[combinat SpatialExtremes]; }; +ABCanalysis = derive { name="ABCanalysis"; version="1.0.2"; sha256="1lgf9nhh5a8m4m48l6gd3d3avjqcplp40jzpb7d7y5vgj8cj1bw6"; depends=[Hmisc plotrix]; }; ABCoptim = derive { name="ABCoptim"; version="0.13.11"; sha256="1j2pbfl5g9x71gq9f7vg6wznsds8sn8dj3q2h5fhjcv58di3gjhl"; depends=[]; }; ABCp2 = derive { name="ABCp2"; version="1.1"; sha256="0s0lbwlc8nycm7b8vx0v01f8dmy91r1zqcj9zgrlj7dnpg4cpkml"; depends=[MASS]; }; ACCLMA = derive { name="ACCLMA"; version="1.0"; sha256="1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"; depends=[]; }; ACD = derive { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; }; -ACNE = derive { name="ACNE"; version="0.8.0"; sha256="0ps38lljzm2aszqf8fhh74zbdxh46kypmybkw5w7xaf9nv5kcq8g"; depends=[aroma_affymetrix MASS R_methodsS3 R_oo R_utils matrixStats R_filesets aroma_core]; }; +ACNE = derive { name="ACNE"; version="0.8.0"; sha256="0ps38lljzm2aszqf8fhh74zbdxh46kypmybkw5w7xaf9nv5kcq8g"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; ACTCD = derive { name="ACTCD"; version="1.0-0"; sha256="0zn8f6l5vmn4w1lqjnpcxvfbr2fhwbhdjx4144h3bk71bk9raavl"; depends=[R_methodsS3]; }; ADDT = derive { name="ADDT"; version="1.0"; sha256="1jx7rxi0yfn34pf3cf9zpf434rapgn5qn2mn5rkq5lysr3kwdw91"; depends=[]; }; ADGofTest = derive { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; ADM3 = derive { name="ADM3"; version="1.3"; sha256="1hg9wjdhckilqd13dr4cim4j6jsh2sdwm18i3pfmfdj8cyswm3h0"; depends=[]; }; -ADPclust = derive { name="ADPclust"; version="0.6.3"; sha256="0lr4zkjhqr9azqxnxpxp9i0ppn8wi8ndb61ki7h2dzfgv27fingk"; depends=[dplyr cluster fields knitr]; }; -AER = derive { name="AER"; version="1.2-3"; sha256="0823zjpl0b7fzhszi28lg1paa41vbxq2xpjil1d4f6dxdysalxlx"; depends=[car lmtest sandwich survival zoo Formula]; }; +ADPclust = derive { name="ADPclust"; version="0.6.3"; sha256="0lr4zkjhqr9azqxnxpxp9i0ppn8wi8ndb61ki7h2dzfgv27fingk"; depends=[cluster dplyr fields knitr]; }; +AER = derive { name="AER"; version="1.2-4"; sha256="0cfhnh6ijwvbywk6falfq852jgx969v35j2l1q3cghwj9yggapbh"; depends=[car Formula lmtest sandwich survival zoo]; }; AFLPsim = derive { name="AFLPsim"; version="0.3-4"; sha256="0xqp1d3cn8rcrsx0yipqh0k4xynv446acxpcammbflsz01xsgx9v"; depends=[adegenet introgress]; }; -AGD = derive { name="AGD"; version="0.32"; sha256="1jjkclqylh43vm1bj1g4cml7a84sxdl94kmhxgmk04rdkmgf8c47"; depends=[gamlss gamlss_dist]; }; +AGD = derive { name="AGD"; version="0.35"; sha256="1dk8m3zqvapwhz0677d3b2cbrin14p9adn5annzgjrxgw7ms4mg0"; depends=[gamlss gamlss_dist]; }; AGSDest = derive { name="AGSDest"; version="2.2"; sha256="00kf786i72bc4a80qswq1iazwqi709pxvzadgfih511plgir6ik2"; depends=[ldbounds]; }; AICcmodavg = derive { name="AICcmodavg"; version="2.0-3"; sha256="1a9jbf3vd77hsf98smjgqchhkc9z8qqp12c1mflln3l0pxx0vk8q"; depends=[lattice MASS Matrix nlme unmarked VGAM xtable]; }; -AID = derive { name="AID"; version="1.5"; sha256="0fpgq2ahl0mdj0sb0p39z2ksslsiwm3hma8d09jmggi3yjbrgqq7"; depends=[MASS tseries nortest]; }; -AIM = derive { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival survival]; }; +AID = derive { name="AID"; version="1.5"; sha256="0fpgq2ahl0mdj0sb0p39z2ksslsiwm3hma8d09jmggi3yjbrgqq7"; depends=[MASS nortest tseries]; }; +AIM = derive { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival]; }; ALDqr = derive { name="ALDqr"; version="0.5"; sha256="0294d6cjfl5m63jhrv4rbh7npwrbmmw5101jz5bbwihhj94qcxp9"; depends=[HyperbolicDist]; }; -ALKr = derive { name="ALKr"; version="0.5.3.1"; sha256="09df3vx2q0sn8fwz2cc9lckzwrf2hgbglzyn376d6nkrm6gq792a"; depends=[MASS Rcpp Rcpp]; }; -ALS = derive { name="ALS"; version="0.0.5"; sha256="1ryviknpf7c0v20bmc40khhmx51b83hbh9q9iwz9d694by51xryc"; depends=[nnls Iso]; }; +ALKr = derive { name="ALKr"; version="0.5.3.1"; sha256="09df3vx2q0sn8fwz2cc9lckzwrf2hgbglzyn376d6nkrm6gq792a"; depends=[MASS Rcpp]; }; +ALS = derive { name="ALS"; version="0.0.5"; sha256="1ryviknpf7c0v20bmc40khhmx51b83hbh9q9iwz9d694by51xryc"; depends=[Iso nnls]; }; ALSCPC = derive { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; ALTopt = derive { name="ALTopt"; version="0.1.0"; sha256="0vdn535x199m95gs715i42p0cf9zlj74s7xgxly7aknr0l2ypl2c"; depends=[cubature lattice]; }; AMAP_Seq = derive { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; }; AMGET = derive { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; }; -AMOEBA = derive { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[snowfall rlecuyer spdep]; }; +AMOEBA = derive { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMORE = derive { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; }; AOfamilies = derive { name="AOfamilies"; version="1.01"; sha256="0v3b83k12lsrdcrkjl2ff38d0g8sbrnm5pmm9xphyrk3lfgap76k"; depends=[lqmm quantreg]; }; +APSIM = derive { name="APSIM"; version="0.8.0"; sha256="0ph4wl6c9jy2w0w3yh8ba12nqbsldicpn2aii675vrvdrx36vwn7"; depends=[data_table lubridate plyr sirad stringr]; }; APSIMBatch = derive { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; AR1seg = derive { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; }; ARPobservation = derive { name="ARPobservation"; version="1.1"; sha256="1cdhn11jf1nf03jyvs17ygmjq9pb5rvmyyrq9fp7ifmvcgbkwsms"; depends=[]; }; +ARTIVA = derive { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; }; ARTP = derive { name="ARTP"; version="2.0.4"; sha256="1f6ay9lyaqsc33b0larb8v6imp5adaycya84wif2sg32rv4gx3yl"; depends=[]; }; -ARTool = derive { name="ARTool"; version="0.9.3"; sha256="188k3whgm93jm2kpvh711d4l73gickn9iwidz95srwdcdlf9cf1y"; depends=[lme4 car plyr pbkrtest]; }; -ASMap = derive { name="ASMap"; version="0.4-1"; sha256="0nslmzhf99vl1zkp702xgcrd36xvis45yb5b0hx0mvf4dfv233lm"; depends=[qtl gtools fields lattice]; }; -ASPBay = derive { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp Rcpp RcppArmadillo]; }; +ARTool = derive { name="ARTool"; version="0.9.5"; sha256="1wfan4v3498libqgjdgn4l4ihf1khp3smj0lmyxd7vb4iaawlzci"; depends=[car lme4 pbkrtest plyr]; }; +ASMap = derive { name="ASMap"; version="0.4-1"; sha256="0nslmzhf99vl1zkp702xgcrd36xvis45yb5b0hx0mvf4dfv233lm"; depends=[fields gtools lattice qtl]; }; +ASPBay = derive { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; }; ATE = derive { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATmet = derive { name="ATmet"; version="1.2"; sha256="047ibxxf5si45zw22zy8a1kpj36q0pd3bsmxwvn0dhf4h65ah0zz"; depends=[DiceDesign lhs metRology msm sensitivity]; }; AUC = derive { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; }; AUCRF = derive { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; AcceptanceSampling = derive { name="AcceptanceSampling"; version="1.0-3"; sha256="1camxmvz8prkvpf3d3rc07bnfphakwdlickqlr4sgzrs4k27rr4f"; depends=[]; }; Actigraphy = derive { name="Actigraphy"; version="1.2"; sha256="02xxmzjqym46q0fzddmy29i8la9knrna3b46y8849nmbpqvmp3qn"; depends=[fda lattice SDMTools]; }; -ActuDistns = derive { name="ActuDistns"; version="3.0"; sha256="04rff9czcgac80clpv32a1dl0jbyvfsa7wqxyywgk99w672x50i2"; depends=[reliaR actuar hypergeo]; }; +ActuDistns = derive { name="ActuDistns"; version="3.0"; sha256="04rff9czcgac80clpv32a1dl0jbyvfsa7wqxyywgk99w672x50i2"; depends=[actuar hypergeo reliaR]; }; AdMit = derive { name="AdMit"; version="2.0.1"; sha256="0bqzq2pf5449qyr8ff5d3sq0lbsph29ppv6zzf1rbjz06sc5d6ff"; depends=[mvtnorm]; }; -AdaptFit = derive { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[SemiPar MASS nlme cluster]; }; -AdaptFitOS = derive { name="AdaptFitOS"; version="0.54"; sha256="0h9jfq9mk5wd6v6an40l3sk2adn6fcaks22bi8d9s7zr2ldpzrjq"; depends=[SemiPar nlme MASS mgcv]; }; -AdaptiveSparsity = derive { name="AdaptiveSparsity"; version="1.4"; sha256="1az7isvalf3kmdiycrfl6s9k9xqk22k1mc6rh8v0jmcz402qyq8z"; depends=[Rcpp Rcpp RcppArmadillo]; }; +AdaptFit = derive { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; }; +AdaptFitOS = derive { name="AdaptFitOS"; version="0.62"; sha256="0cxl58by9mfd6hf4hb2d5qnm0pgb0gplgg7mm0qhvckvghjpb00q"; depends=[MASS mgcv nlme SemiPar]; }; +AdaptiveSparsity = derive { name="AdaptiveSparsity"; version="1.4"; sha256="1az7isvalf3kmdiycrfl6s9k9xqk22k1mc6rh8v0jmcz402qyq8z"; depends=[Rcpp RcppArmadillo]; }; AdequacyModel = derive { name="AdequacyModel"; version="1.0.8"; sha256="1bpb6lwgkh5g82h4yaf5dh2jbl6f0vz36k22538rhb3kdld6w0i3"; depends=[]; }; Agreement = derive { name="Agreement"; version="0.8-1"; sha256="1g29rxr8xsr0dh2r6c6j2bqs0q6snz9wz0hrnb92cxj27ili55yq"; depends=[R2HTML]; }; Ake = derive { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; }; AlgDesign = derive { name="AlgDesign"; version="1.1-7.3"; sha256="0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"; depends=[]; }; AllPossibleSpellings = derive { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive { name="AlleleRetain"; version="1.3.1"; sha256="1k2iwns1wk5n02cii6p9prgdb6asys3vwiq5dq2i26fk2xr6j4gq"; depends=[]; }; -Amelia = derive { name="Amelia"; version="1.7.3"; sha256="07agkgg4jdjk4kxf87nck7dyihpf2l4pmpf20a7ld9c83is14ib1"; depends=[Rcpp foreign Rcpp RcppArmadillo]; }; +Amelia = derive { name="Amelia"; version="1.7.3"; sha256="07agkgg4jdjk4kxf87nck7dyihpf2l4pmpf20a7ld9c83is14ib1"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; AmpliconDuo = derive { name="AmpliconDuo"; version="1.0"; sha256="0l6p5c2802a1f3b77cdrrk3wdf41926mh34630p462fb3wqipps0"; depends=[ggplot2 xtable]; }; -AnDE = derive { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization functional foreign stringr]; }; -AnalyzeFMRI = derive { name="AnalyzeFMRI"; version="1.1-16"; sha256="1mbjb682ns5230jd3vcvd6x4gnn9hpbmjd7r8120y4sp2g733b0f"; depends=[R_matlab fastICA]; }; +AnDE = derive { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; }; +AnalyzeFMRI = derive { name="AnalyzeFMRI"; version="1.1-16"; sha256="1mbjb682ns5230jd3vcvd6x4gnn9hpbmjd7r8120y4sp2g733b0f"; depends=[fastICA R_matlab]; }; AncestryMapper = derive { name="AncestryMapper"; version="1.2"; sha256="0d47vkf59ysa58wnlqkshsvdzhcppb9xc1agwkxv37jv1asllb67"; depends=[]; }; AnglerCreelSurveySimulation = derive { name="AnglerCreelSurveySimulation"; version="0.2.1"; sha256="100mbmdllk6c32j75jviz2k9kmwca3jvrqb95a555alfcpkfim8c"; depends=[]; }; AnnotLists = derive { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; }; -AntWeb = derive { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[rjson plyr assertthat httr leafletR]; }; +AntWeb = derive { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; AnthropMMD = derive { name="AnthropMMD"; version="0.9.9"; sha256="10wn0fkcli5yz3fhngsz8sg1mfllqkvjrpjggd9qynay2zrpiw1n"; depends=[tcltk2]; }; -Anthropometry = derive { name="Anthropometry"; version="1.1"; sha256="1yqdps5n07jl05nv7136jwhfndn01vim2kx9s76mk4alvsw7s8ls"; depends=[shapes rgl archetypes nnls depth FNN ICGE cluster biclust]; }; -ApacheLogProcessor = derive { name="ApacheLogProcessor"; version="0.1"; sha256="0wdf9438c5rww0fm5k44ahvivg95vzn3dpnhf4mhpvrjd1am546z"; depends=[foreach doParallel]; }; +Anthropometry = derive { name="Anthropometry"; version="1.2"; sha256="15689jy85kf8j9w8yhffjfjw3lsdlv2w99za32p33shp32f3rvjz"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; +ApacheLogProcessor = derive { name="ApacheLogProcessor"; version="0.1.5"; sha256="1xnx6syn365s4w4pks7xq6rng7hk30xln8hvszxwhwfnkzr8qqn2"; depends=[doParallel foreach]; }; AppliedPredictiveModeling = derive { name="AppliedPredictiveModeling"; version="1.1-6"; sha256="004d2k3mhl45inb7kx1ph8xc8h9bgm7f7l3prmvqrl5792400cn4"; depends=[CORElearn MASS plyr reshape2]; }; -AquaEnv = derive { name="AquaEnv"; version="1.0-3"; sha256="1hkygw09w70im9f6l6q5yxk86mdl5pkczqfqrwc4wl1yhz7z1gjb"; depends=[minpack_lm deSolve]; }; +AquaEnv = derive { name="AquaEnv"; version="1.0-3"; sha256="1hkygw09w70im9f6l6q5yxk86mdl5pkczqfqrwc4wl1yhz7z1gjb"; depends=[deSolve minpack_lm]; }; ArArRedux = derive { name="ArArRedux"; version="0.1"; sha256="1fgll399plraijbh1xrhf1nmc308daqhhsi5krq2lm7q2cn584pc"; depends=[]; }; ArDec = derive { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; }; -ArfimaMLM = derive { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[lme4 fractal fracdiff]; }; -ArrayBin = derive { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[]; }; -AssetPricing = derive { name="AssetPricing"; version="1.0-0"; sha256="12v8hmmknkp472x406zgzwjp7x8sc90byc3s3dvmwd5qhryxkkix"; depends=[polynom deSolve]; }; +ArfimaMLM = derive { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[fracdiff fractal lme4]; }; +ArgumentCheck = derive { name="ArgumentCheck"; version="0.9.0"; sha256="1gyc6bx6sfp7k8cp43l6fic4rfn729h6kl5zqs3ypf4425s7jm3f"; depends=[]; }; +ArrayBin = derive { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; }; +AssetPricing = derive { name="AssetPricing"; version="1.0-0"; sha256="12v8hmmknkp472x406zgzwjp7x8sc90byc3s3dvmwd5qhryxkkix"; depends=[deSolve polynom]; }; AssotesteR = derive { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; }; AsynchLong = derive { name="AsynchLong"; version="1.0"; sha256="097d0zvzjkz3v32qhxdir0xv7kbjkhzy6q5k54w8l4fa2632j3mk"; depends=[]; }; -AtelieR = derive { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58xg9wvqcril8j8yd61lkkmz4b3195zai"; depends=[proto cairoDevice gWidgetsRGtk2 partitions]; }; +AtelieR = derive { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58xg9wvqcril8j8yd61lkkmz4b3195zai"; depends=[cairoDevice gWidgetsRGtk2 partitions proto]; }; AtmRay = derive { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; }; -AutoSEARCH = derive { name="AutoSEARCH"; version="1.5"; sha256="1s2ldhxijd8n9ba78faik6gn4f07pdzksy0030pqyafxlr3v1qdj"; depends=[zoo lgarch]; }; -B2Z = derive { name="B2Z"; version="1.4"; sha256="0w7394vs883vb32gs6yhrc1kh5406rs851yb2gs8hqzxad1alvpn"; depends=[numDeriv coda mvtnorm]; }; -BACA = derive { name="BACA"; version="0.99.0"; sha256="19n6ajq6szpzwj36lfg7wrh2j3d3ikn13a1j3g2xvfy275qdmmm4"; depends=[ggplot2 rJava]; }; -BACCO = derive { name="BACCO"; version="2.0-9"; sha256="0i1dnk0g3miyv3b60rzgjjm60180wxzv6v2q477r71q74b0v0r1y"; depends=[emulator calibrator approximator]; }; -BACprior = derive { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[mvtnorm leaps boot]; }; +AutoSEARCH = derive { name="AutoSEARCH"; version="1.5"; sha256="1s2ldhxijd8n9ba78faik6gn4f07pdzksy0030pqyafxlr3v1qdj"; depends=[lgarch zoo]; }; +B2Z = derive { name="B2Z"; version="1.4"; sha256="0w7394vs883vb32gs6yhrc1kh5406rs851yb2gs8hqzxad1alvpn"; depends=[coda mvtnorm numDeriv]; }; +BACA = derive { name="BACA"; version="1.3"; sha256="1vbip7wbzix1s2izbm4058wmwar7w5rv3q8bmj9pm7hcapfi19k0"; depends=[ggplot2 RDAVIDWebService rJava]; }; +BACCO = derive { name="BACCO"; version="2.0-9"; sha256="0i1dnk0g3miyv3b60rzgjjm60180wxzv6v2q477r71q74b0v0r1y"; depends=[approximator calibrator emulator]; }; +BACprior = derive { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[boot leaps mvtnorm]; }; BAEssd = derive { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; BAMMtools = derive { name="BAMMtools"; version="2.0.5"; sha256="1xrhif8872w5rwiba5lc705162si3vflri2r6wj8n69qg979kvw0"; depends=[ape]; }; -BANFF = derive { name="BANFF"; version="0.3"; sha256="0z7hwplp12m8sypkndjkjkmanbh67h47k8j9wm60qg6nnyqry9np"; depends=[foreach doParallel DPpackage igraph mclust pscl tmvtnorm network coda]; }; -BANOVA = derive { name="BANOVA"; version="0.2"; sha256="1zgn9wxh4c89rris58hhj5fh37mmy8wjvligr02id7a1pcw177m3"; depends=[rjags runjags coda]; }; +BANFF = derive { name="BANFF"; version="0.3"; sha256="0z7hwplp12m8sypkndjkjkmanbh67h47k8j9wm60qg6nnyqry9np"; depends=[coda doParallel DPpackage foreach igraph mclust network pscl tmvtnorm]; }; +BANOVA = derive { name="BANOVA"; version="0.2"; sha256="1zgn9wxh4c89rris58hhj5fh37mmy8wjvligr02id7a1pcw177m3"; depends=[coda rjags runjags]; }; BASIX = derive { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; -BAT = derive { name="BAT"; version="1.3.0"; sha256="0a8l3hzlgxyp604dg20qm9hvxl97dyh1lm0hj85p6s6nz0qwi8jy"; depends=[vegan spatstat nls2]; }; -BAYSTAR = derive { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[mvtnorm coda]; }; +BAT = derive { name="BAT"; version="1.3.0"; sha256="0a8l3hzlgxyp604dg20qm9hvxl97dyh1lm0hj85p6s6nz0qwi8jy"; depends=[nls2 spatstat vegan]; }; +BAYSTAR = derive { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; BB = derive { name="BB"; version="2014.10-1"; sha256="1lig3vxhyxy8cnic5bczms8pajmdvwr2ijad1rkdndpglving7x0"; depends=[quadprog]; }; -BBEST = derive { name="BBEST"; version="0.1-4"; sha256="0yqsz97lljlydhphiy0fb7vwbqxpjzn5v0v665c39dlprxv3jg3b"; depends=[DEoptim wmtsa ggplot2 reshape2 shiny]; }; +BBEST = derive { name="BBEST"; version="0.1-4"; sha256="0yqsz97lljlydhphiy0fb7vwbqxpjzn5v0v665c39dlprxv3jg3b"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; }; BBMM = derive { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; }; -BBRecapture = derive { name="BBRecapture"; version="0.1"; sha256="05xzp5zjmkh0cyl47qfsz0l8drg8mimssybhycc4q69aif9scqxb"; depends=[HI locfit lme4 secr]; }; +BBRecapture = derive { name="BBRecapture"; version="0.1"; sha256="05xzp5zjmkh0cyl47qfsz0l8drg8mimssybhycc4q69aif9scqxb"; depends=[HI lme4 locfit secr]; }; BBmisc = derive { name="BBmisc"; version="1.9"; sha256="01ihbx6cfgqvz87kpy7yb9c7jlizdym3f0n16967x2imq73dazsb"; depends=[checkmate]; }; -BCA = derive { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[RcmdrMisc Rcmdr car rpart flexclust clv]; }; +BCA = derive { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; }; BCBCSF = derive { name="BCBCSF"; version="1.0-0"; sha256="1ag8wz8a9vh1x4jgppimgchfs53rr6hbg5xzzr6k2h4bfsg7pmn3"; depends=[abind]; }; BCDating = derive { name="BCDating"; version="0.9.7"; sha256="0z3a95sc481p0n33mhg7qlsf1jynbm1vbfds0n03bsjrwvqkzpb2"; depends=[]; }; BCE = derive { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; BCEA = derive { name="BCEA"; version="2.1-1"; sha256="1j2zb2icv5b6kwgbjzvidbzvciag89227ina6qcb2m4g6spyxcrm"; depends=[]; }; BCEs0 = derive { name="BCEs0"; version="1.1"; sha256="0q63bkmk0kk9p5d3xb0f5srzfrbr743isyw4v2h9ch5yyxizcizb"; depends=[]; }; BCRA = derive { name="BCRA"; version="1.0"; sha256="1bbxh1kf35h31c4k565kk6grdhp5pnn8vr3nr6vnp32dp4pc05zh"; depends=[]; }; -BDgraph = derive { name="BDgraph"; version="2.18"; sha256="08cm4lk587ffrbr57s4krvwgb7fdpnd767g4adnadq0hv0r27xqq"; depends=[Matrix igraph]; }; +BDgraph = derive { name="BDgraph"; version="2.19"; sha256="1z1ah2d5mjdfqgi00p2jlslhfd256ksijg3nk307594k2c8psqfp"; depends=[igraph Matrix]; }; BEANSP = derive { name="BEANSP"; version="1.0"; sha256="0xcb81pk3iidb3dz9l4hm6cwx8hrbg5qz0sfi59yx2f7nsazr4xk"; depends=[]; }; -BEDASSLE = derive { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[MASS matrixcalc emdbook]; }; -BEQI2 = derive { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[knitr markdown jsonlite xtable plyr reshape2]; }; -BEST = derive { name="BEST"; version="0.2.2"; sha256="160lvrd0zjm1lr8llra6lyz3qsmqhn3bpdlmwingwfimbpb754rz"; depends=[rjags coda]; }; +BEDASSLE = derive { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; +BEQI2 = derive { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; }; +BEST = derive { name="BEST"; version="0.2.2"; sha256="160lvrd0zjm1lr8llra6lyz3qsmqhn3bpdlmwingwfimbpb754rz"; depends=[coda rjags]; }; BGLR = derive { name="BGLR"; version="1.0.4"; sha256="1bvk8iifvrcvnb0f1k3v9xxajljsz79ck95191p8alnda64cz0zf"; depends=[]; }; BGPhazard = derive { name="BGPhazard"; version="1.2.2"; sha256="1v89pjigrjkin9vsf6sa0qhwxvn1a3dy2gqwq3sd9v6y0hrld6ng"; depends=[survival]; }; BGSIMD = derive { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; -BH = derive { name="BH"; version="1.55.0-3"; sha256="0p3xbbnj4l844sgg59ply5ng8z42lbs6z8cghsr3bxbbv4w9lkbs"; depends=[]; }; +BH = derive { name="BH"; version="1.58.0-1"; sha256="17rnwyw9ib2pvm60iixzkbz7ff4fslpifp1nlx4czp42hy67kqpf"; depends=[]; }; BHH2 = derive { name="BHH2"; version="2012.04-0"; sha256="10ixvjpkqamlddrndpnw5gsdm4gdhp693jdvc0f774ngmf32rbaa"; depends=[]; }; -BHMSMAfMRI = derive { name="BHMSMAfMRI"; version="1.0"; sha256="0j5ivknsr441clgm0b95f2rz4pr29ixvw3dgsi8nb0ffh52dgz7q"; depends=[fmri AnalyzeFMRI wavethresh]; }; -BIFIEsurvey = derive { name="BIFIEsurvey"; version="1.2-6"; sha256="1fin5dr1xxr617i4ysfx39gaw6ygbcm4h7j1l38kqnfz18hn6xsq"; depends=[Rcpp miceadds mitools TAM Rcpp RcppArmadillo]; }; +BHMSMAfMRI = derive { name="BHMSMAfMRI"; version="1.0"; sha256="0j5ivknsr441clgm0b95f2rz4pr29ixvw3dgsi8nb0ffh52dgz7q"; depends=[AnalyzeFMRI fmri wavethresh]; }; +BIFIEsurvey = derive { name="BIFIEsurvey"; version="1.2-6"; sha256="1fin5dr1xxr617i4ysfx39gaw6ygbcm4h7j1l38kqnfz18hn6xsq"; depends=[miceadds mitools Rcpp RcppArmadillo TAM]; }; +BIGDAWG = derive { name="BIGDAWG"; version="1.1"; sha256="0rgk2w7d8qq2dahfmiv81v1ydm1by6nabjzjb6iabfk0b8bnwqy2"; depends=[haplo_stats XML]; }; BIOM_utils = derive { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; -BIPOD = derive { name="BIPOD"; version="0.2.1"; sha256="04r58gzk3hldbn115j9ik4bclzz5xb2i3x6b90m2w9sq7ymn3zg1"; depends=[Rcpp Rcpp RcppArmadillo]; }; -BLCOP = derive { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[MASS quadprog RUnit timeSeries fBasics fMultivar fPortfolio]; }; +BIPOD = derive { name="BIPOD"; version="0.2.1"; sha256="04r58gzk3hldbn115j9ik4bclzz5xb2i3x6b90m2w9sq7ymn3zg1"; depends=[Rcpp RcppArmadillo]; }; +BLCOP = derive { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; }; BLR = derive { name="BLR"; version="1.4"; sha256="0wy3c8nnzkdhwb5s1ygdid47hpdx72ryim36mnicrydy0msjivja"; depends=[SuppDists]; }; -BMA = derive { name="BMA"; version="3.18.1"; sha256="0ppcjjcrjrs18lp55hrs0ad7x052v57wd0zdfmvyydlsjbgnsx1p"; depends=[survival leaps robustbase inline]; }; +BMA = derive { name="BMA"; version="3.18.1"; sha256="0ppcjjcrjrs18lp55hrs0ad7x052v57wd0zdfmvyydlsjbgnsx1p"; depends=[inline leaps robustbase survival]; }; BMN = derive { name="BMN"; version="1.02"; sha256="12gyq01cn6a9ixqgki1ihx5jrp2gw6jdj7q210rb12xlvj3p6x7w"; depends=[]; }; BMS = derive { name="BMS"; version="0.3.3"; sha256="1yj9vi8jvhkwpcjkclf0zbah0dayridklpj65ay6r18fyf4crnd2"; depends=[]; }; BMhyd = derive { name="BMhyd"; version="1.2-2"; sha256="09gb1pq9y3gq9avpaqrlxdsm9iqsxpbnr0bg2mw1vkhc0d5z8zv7"; depends=[corpcor numDeriv]; }; BNDataGenerator = derive { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; }; -BNPTSclust = derive { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[mvtnorm MASS]; }; -BNPdensity = derive { name="BNPdensity"; version="2013.8"; sha256="1qlhav764ji289kcibbmqjj62mmxiw3zsiwjz1gkifzgpmzyar85"; depends=[]; }; -BNSP = derive { name="BNSP"; version="1.0.2"; sha256="0hbrx02mybfrzfab5g7kwi6g68jdzj2dc69zxkn3hpyf4rqwbw4x"; depends=[]; }; -BOG = derive { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[hash DIME]; }; +BNPTSclust = derive { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; }; +BNPdensity = derive { name="BNPdensity"; version="2015.5"; sha256="0jgdc9dayc57y77bb2yjcn1pb5ahrvbrsmyjkhyl4365sn5njzl8"; depends=[]; }; +BNSP = derive { name="BNSP"; version="1.0.3"; sha256="1q7nxl1lx57dzb5yfpb0966ylyl15x22y9r78r6pxrprrbsnv931"; depends=[]; }; +BOG = derive { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; BOIN = derive { name="BOIN"; version="1.1"; sha256="1ffr6w9ml0mkffgg1vds8fmf8ww7rs375pxk2dqv9nlb9061m97r"; depends=[]; }; -BRugs = derive { name="BRugs"; version="0.8-3"; sha256="1qjwm6qizg70nvpl5p2yx65ynghazchqw7d2iadhdjz7dd293sqi"; depends=[coda]; }; +BRugs = derive { name="BRugs"; version="0.8-4"; sha256="0bd5m4nfj25bhjy0d96kna50h5a5a2mdxrl21c1kvxmiwxcx4wrs"; depends=[coda]; }; BSDA = derive { name="BSDA"; version="1.01"; sha256="06mgmwwh56bj27wdya8ln9mr3v5gb6fcca7v9s256k64i19z12yi"; depends=[e1071 lattice]; }; -BSGS = derive { name="BSGS"; version="1.0"; sha256="11r7bx9ax84iv3gam02p1hg174ni3d3gv6yj64n0gp2gaj438hv7"; depends=[MASS pscl plyr]; }; +BSGS = derive { name="BSGS"; version="1.0"; sha256="11r7bx9ax84iv3gam02p1hg174ni3d3gv6yj64n0gp2gaj438hv7"; depends=[MASS plyr pscl]; }; BSGW = derive { name="BSGW"; version="0.9"; sha256="0df5d0d0kfvwavxbxra36jjs9044q1szq1xm37dvh4wfvvv6igmb"; depends=[survival]; }; BSSasymp = derive { name="BSSasymp"; version="1.1-0"; sha256="0z3abgvbpmwgzb6b6r5ys3msy97lfdg81p8d19c83aaa6hrngggn"; depends=[fICA JADE]; }; -BSagri = derive { name="BSagri"; version="0.1-8"; sha256="148pr4lkgdi4bwc9lavgj356nh240iazz28xklq14rw4gzhmz2k4"; depends=[gamlss multcomp MCPAN mvtnorm boot mratios]; }; +BSagri = derive { name="BSagri"; version="0.1-8"; sha256="148pr4lkgdi4bwc9lavgj356nh240iazz28xklq14rw4gzhmz2k4"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; BSquare = derive { name="BSquare"; version="1.1"; sha256="1s16307m5gj60nv4m652iisyqi3jw5pmnvar6f52rw1sypfp5n49"; depends=[quadprog quantreg VGAM]; }; -BTSPAS = derive { name="BTSPAS"; version="2014.0901"; sha256="0ankkhm38rvq06g0jnbvjbja4jv8lg21dsc0rxsy174b1i6vjhwi"; depends=[coda actuar rjags R2OpenBUGS ggplot2 plyr]; }; +BTSPAS = derive { name="BTSPAS"; version="2014.0901"; sha256="0ankkhm38rvq06g0jnbvjbja4jv8lg21dsc0rxsy174b1i6vjhwi"; depends=[actuar coda ggplot2 plyr R2OpenBUGS rjags]; }; BTYD = derive { name="BTYD"; version="2.4"; sha256="13szcsgsrd7mwc4f47xrfrmsm2sg5sf7pfm21ly4cbvqcz8m0147"; depends=[hypergeo Matrix]; }; -BVS = derive { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[MASS msm haplo_stats]; }; -BaBooN = derive { name="BaBooN"; version="0.1-6"; sha256="1splid5mvyd04d1lxkq45md910ry6n516cph20j6vqfhla0arxjg"; depends=[MASS nnet]; }; -BaM = derive { name="BaM"; version="0.99"; sha256="1q04va2s876ydlmaalx63r520pfx1qzpjg6hbnl9pvn86b5grnf4"; depends=[bayesm coda MASS mice survival foreign nnet]; }; +BVS = derive { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; }; +BaBooN = derive { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; }; +BaM = derive { name="BaM"; version="0.99"; sha256="1q04va2s876ydlmaalx63r520pfx1qzpjg6hbnl9pvn86b5grnf4"; depends=[bayesm coda foreign MASS mice nnet survival]; }; BaSTA = derive { name="BaSTA"; version="1.9.3"; sha256="1jfki5lnsvd6fjrld2qp179lyzli61pi2308lkkl1h6vgp11zp2v"; depends=[msm]; }; -BalancedSampling = derive { name="BalancedSampling"; version="1.4"; sha256="0l8jxszd0j27kb58xrn7lvf52mhifqjd1w42cp4kdiax8c6s7421"; depends=[Rcpp Rcpp]; }; -BatchExperiments = derive { name="BatchExperiments"; version="1.4.1"; sha256="0fg7p0q6avc0kcwcd3z4q3akrr2mkrx2yf9zcd6hhz22l3x4aphz"; depends=[BatchJobs checkmate BBmisc DBI RSQLite plyr]; }; +BalancedSampling = derive { name="BalancedSampling"; version="1.4"; sha256="0l8jxszd0j27kb58xrn7lvf52mhifqjd1w42cp4kdiax8c6s7421"; depends=[Rcpp]; }; +BatchExperiments = derive { name="BatchExperiments"; version="1.4.1"; sha256="0fg7p0q6avc0kcwcd3z4q3akrr2mkrx2yf9zcd6hhz22l3x4aphz"; depends=[BatchJobs BBmisc checkmate DBI plyr RSQLite]; }; BatchJobs = derive { name="BatchJobs"; version="1.6"; sha256="1kb99024jih5bycc226bl4jyvbbl1sg72q3m2wnlshl7s8p6vva0"; depends=[BBmisc brew checkmate DBI digest fail RSQLite sendmailR stringr]; }; BayClone2 = derive { name="BayClone2"; version="1.1"; sha256="1wprdj22zh8fwqawcv4m2n2y7sqwh2f6m9b0cq0rp4ll774yz30i"; depends=[combinat]; }; BayHap = derive { name="BayHap"; version="1.0.1"; sha256="0xqnl2cbf0pyjlpywyy0j4mwknfn8msz4s719dsri3r7hvn9m6kd"; depends=[boa]; }; BayHaz = derive { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; -BaySIC = derive { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[rjags fields poibin]; }; +BaySIC = derive { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; BayesBridge = derive { name="BayesBridge"; version="0.6"; sha256="1j03m465pwq0lhbrfvddjglrzs6px7bc89yvfzj776amm7myqd0l"; depends=[]; }; -BayesCR = derive { name="BayesCR"; version="2.0"; sha256="0cafind5vz81ryw1c7324hyfc6922fsxmjnvddb4mrhis54id2r4"; depends=[mvtnorm Rlab truncdist mnormt rootSolve]; }; -BayesComm = derive { name="BayesComm"; version="0.1-0"; sha256="17hnq4z451g2j3p73awllihhwsdy3grh6ki3qy9bkr064wvzbvcj"; depends=[Rcpp RcppArmadillo coda Rcpp RcppArmadillo]; }; +BayesCR = derive { name="BayesCR"; version="2.0"; sha256="0cafind5vz81ryw1c7324hyfc6922fsxmjnvddb4mrhis54id2r4"; depends=[mnormt mvtnorm Rlab rootSolve truncdist]; }; +BayesComm = derive { name="BayesComm"; version="0.1-0"; sha256="17hnq4z451g2j3p73awllihhwsdy3grh6ki3qy9bkr064wvzbvcj"; depends=[coda Rcpp RcppArmadillo]; }; BayesDA = derive { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; -BayesFactor = derive { name="BayesFactor"; version="0.9.11-1"; sha256="0vq656q38vlf0ba8g23psk8as1y48y6s8yrvqrppbjx5d9wlm9wv"; depends=[coda Matrix pbapply mvtnorm stringr gtools MatrixModels Rcpp Rcpp RcppEigen]; }; -BayesGESM = derive { name="BayesGESM"; version="1.3"; sha256="0lw593hqava5bhr8nfbh3qw63ilfr06zh58p2rw3nnv1ldrrzncv"; depends=[truncdist GIGrvg normalp Formula]; }; -BayesLCA = derive { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[e1071 coda fields nlme MCMCpack]; }; +BayesFactor = derive { name="BayesFactor"; version="0.9.11-1"; sha256="0vq656q38vlf0ba8g23psk8as1y48y6s8yrvqrppbjx5d9wlm9wv"; depends=[coda gtools Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; +BayesGESM = derive { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; }; +BayesLCA = derive { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[coda e1071 fields MCMCpack nlme]; }; BayesLogit = derive { name="BayesLogit"; version="0.5.1"; sha256="0nr215wzhqlfi32617mmqb6i3w5x1kh5fiy68k0xzdqjsyjr65m0"; depends=[]; }; -BayesMed = derive { name="BayesMed"; version="1.0.1"; sha256="1ysc7sh0drqxbisi2dz6gj4jlw6qsd879bbhr5pra7nxgmk4h650"; depends=[R2jags QRM polspline MCMCpack]; }; +BayesMed = derive { name="BayesMed"; version="1.0.1"; sha256="1ysc7sh0drqxbisi2dz6gj4jlw6qsd879bbhr5pra7nxgmk4h650"; depends=[MCMCpack polspline QRM R2jags]; }; BayesMixSurv = derive { name="BayesMixSurv"; version="0.9"; sha256="0hqkqpzk21d2zh7pyn042w1s51wyszkmam0rwzgy0i9i51zjxwvz"; depends=[survival]; }; BayesNI = derive { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; -BayesSAE = derive { name="BayesSAE"; version="1.0-1"; sha256="09s7f472by689b2b0gahnkhyjriizpsx6r5qa95nf3f4bfqi2cpf"; depends=[Formula coda lattice]; }; -BayesSingleSub = derive { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda mvtnorm MCMCpack]; }; -BayesSummaryStatLM = derive { name="BayesSummaryStatLM"; version="1.0-1"; sha256="05mlgyi4fglvjkpqyw3vcjpipqllx37svcb20c1mrsa46m6fm4s7"; depends=[mvnfast ff]; }; +BayesSAE = derive { name="BayesSAE"; version="1.0-1"; sha256="09s7f472by689b2b0gahnkhyjriizpsx6r5qa95nf3f4bfqi2cpf"; depends=[coda Formula lattice]; }; +BayesSingleSub = derive { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda MCMCpack mvtnorm]; }; +BayesSummaryStatLM = derive { name="BayesSummaryStatLM"; version="1.0-1"; sha256="05mlgyi4fglvjkpqyw3vcjpipqllx37svcb20c1mrsa46m6fm4s7"; depends=[ff mvnfast]; }; BayesTree = derive { name="BayesTree"; version="0.3-1.2"; sha256="1if6x7xxs8pv37c3w4yij17gxnf63k83lawzlmd2644w1i6p7sw1"; depends=[nnet]; }; BayesValidate = derive { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; }; BayesVarSel = derive { name="BayesVarSel"; version="1.6.1"; sha256="1pmhbyvsq4k2kqnbnxm089qxil0ac61msa204pck6r0b360pmpnh"; depends=[MASS]; }; -BayesX = derive { name="BayesX"; version="0.2-9"; sha256="0p170m8zkaspiah1fdyql9lj9yqg6sl525blzq7wwgx5wx4rvncs"; depends=[shapefiles sp maptools colorspace coda]; }; +BayesX = derive { name="BayesX"; version="0.2-9"; sha256="0p170m8zkaspiah1fdyql9lj9yqg6sl525blzq7wwgx5wx4rvncs"; depends=[coda colorspace maptools shapefiles sp]; }; BayesXsrc = derive { name="BayesXsrc"; version="2.1-2"; sha256="114804f6maak5dmwzw4cbigjcdw7c6sgx48af35yrvkspi1gsz3b"; depends=[]; }; BayesianAnimalTracker = derive { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; -Bayesianbetareg = derive { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[mvtnorm betareg]; }; -Bayesthresh = derive { name="Bayesthresh"; version="2.0.1"; sha256="0w26h1ragqcg1i4h7c2y6vd8fig2jb2zrnvvchgg5z2hg9qdplsf"; depends=[lme4 MASS VGAM mvtnorm matrixcalc coda]; }; +Bayesianbetareg = derive { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[betareg mvtnorm]; }; +Bayesthresh = derive { name="Bayesthresh"; version="2.0.1"; sha256="0w26h1ragqcg1i4h7c2y6vd8fig2jb2zrnvvchgg5z2hg9qdplsf"; depends=[coda lme4 MASS matrixcalc mvtnorm VGAM]; }; BaylorEdPsych = derive { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; }; -BcDiag = derive { name="BcDiag"; version="1.0.8"; sha256="1x9rkr96dgxp88z9qaw72ikcdmdlxnj8vjn3bfv0q27sfyxwb3a5"; depends=[]; }; -Bchron = derive { name="Bchron"; version="4.1.1"; sha256="0dnfz7xpmbygyarh9ai9x3xfsqiizi0zhnxm8bmkvqyb8h7zpghb"; depends=[inline hdrcde MASS ellipse coda mclust]; }; -Bclim = derive { name="Bclim"; version="2.3.1"; sha256="160c9v83bpik73yjj45lr8sdgl8v4ymlkqw424ncc3lficyhvfjg"; depends=[MASS mclust hdrcde statmod]; }; +BcDiag = derive { name="BcDiag"; version="1.0.8"; sha256="1x9rkr96dgxp88z9qaw72ikcdmdlxnj8vjn3bfv0q27sfyxwb3a5"; depends=[fabia]; }; +Bchron = derive { name="Bchron"; version="4.1.1"; sha256="0dnfz7xpmbygyarh9ai9x3xfsqiizi0zhnxm8bmkvqyb8h7zpghb"; depends=[coda ellipse hdrcde inline MASS mclust]; }; +Bclim = derive { name="Bclim"; version="2.3.1"; sha256="160c9v83bpik73yjj45lr8sdgl8v4ymlkqw424ncc3lficyhvfjg"; depends=[hdrcde MASS mclust statmod]; }; Benchmarking = derive { name="Benchmarking"; version="0.24"; sha256="18gx8cwip1c03p37apyr9z89p117bz439vfgx91gxbbg1scc8bfp"; depends=[lpSolveAPI ucminf]; }; BenfordTests = derive { name="BenfordTests"; version="1.1.1"; sha256="12xzc4gq4h7p18ypbkybrzjj2qh71rgd7nzznij36yv7n6h21mlw"; depends=[]; }; -Bergm = derive { name="Bergm"; version="3.0.1"; sha256="1ngxqpagf8snnwdm82bg8yxbf1zpzd99g32fhw9l4gjx77kpkhl2"; depends=[ergm network coda mvtnorm]; }; -BerlinData = derive { name="BerlinData"; version="1.0.1"; sha256="1shhx4pisi139sc0siawa7gp9psfgxm58qijg5m65nihv7spki75"; depends=[XML stringr rjson]; }; +Bergm = derive { name="Bergm"; version="3.0.1"; sha256="1ngxqpagf8snnwdm82bg8yxbf1zpzd99g32fhw9l4gjx77kpkhl2"; depends=[coda ergm mvtnorm network]; }; +BerlinData = derive { name="BerlinData"; version="1.0.1"; sha256="1shhx4pisi139sc0siawa7gp9psfgxm58qijg5m65nihv7spki75"; depends=[rjson stringr XML]; }; Bessel = derive { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; Bhat = derive { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiDimRegression = derive { name="BiDimRegression"; version="1.0.6"; sha256="1kgrk4xanvxqdq619ha08wwplmsn2xqygx4dziagx48iqfpp1lxj"; depends=[nlme]; }; -BiSEp = derive { name="BiSEp"; version="2.0.1"; sha256="15sn9kxs0mb98kclfpif90c808a1365gdj2j332sxi07f64pb87q"; depends=[mclust]; }; +BiSEp = derive { name="BiSEp"; version="2.0.1"; sha256="15sn9kxs0mb98kclfpif90c808a1365gdj2j332sxi07f64pb87q"; depends=[AnnotationDbi GOSemSim mclust]; }; BiasedUrn = derive { name="BiasedUrn"; version="1.06.1"; sha256="1ra9fmymm97a2b8jsrsi98cjnnxc478zq51lx7a5pgafprcwcgkg"; depends=[]; }; -BigTSP = derive { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[glmnet tree randomForest gbm]; }; -BinNonNor = derive { name="BinNonNor"; version="1.2"; sha256="15bzpi2q2428661v8z9izp942ihffgq8dgh4fsnzllvdrpqcyc41"; depends=[BB corpcor mvtnorm Matrix]; }; -BinNor = derive { name="BinNor"; version="2.0"; sha256="0c1qy93ccgzg8g25wm1j4ninsa0ck4y3jjh25za92w070cqhkd8m"; depends=[mvtnorm corpcor psych Matrix]; }; -BinOrdNonNor = derive { name="BinOrdNonNor"; version="1.0"; sha256="1x231xxdiyp6nwj2dx9w1shi5w6mdyzg43g5zc4r2bpvzccgj0l0"; depends=[GenOrd OrdNor BB corpcor Matrix mvtnorm]; }; +BigTSP = derive { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; +BinNonNor = derive { name="BinNonNor"; version="1.2"; sha256="15bzpi2q2428661v8z9izp942ihffgq8dgh4fsnzllvdrpqcyc41"; depends=[BB corpcor Matrix mvtnorm]; }; +BinNor = derive { name="BinNor"; version="2.0"; sha256="0c1qy93ccgzg8g25wm1j4ninsa0ck4y3jjh25za92w070cqhkd8m"; depends=[corpcor Matrix mvtnorm psych]; }; +BinOrdNonNor = derive { name="BinOrdNonNor"; version="1.0"; sha256="1x231xxdiyp6nwj2dx9w1shi5w6mdyzg43g5zc4r2bpvzccgj0l0"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; Binarize = derive { name="Binarize"; version="1.0"; sha256="1yfr87s1hgjhc8ah81sfrgr1hpp0vd5clqayrz1i698h1c34amkh"; depends=[diptest]; }; -BioGeoBEARS = derive { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[rexpokit cladoRcpp ape phylobase optimx FD xtable plotrix gdata]; }; -BioMark = derive { name="BioMark"; version="0.4.2"; sha256="17r4q2migmdk2vqfbr69q07cgdzwpjgs3ijmnm42srs5d3brw8cr"; depends=[pls glmnet MASS st]; }; -BioPhysConnectoR = derive { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[snow matrixcalc]; }; +BinaryEPPM = derive { name="BinaryEPPM"; version="1.0"; sha256="088yg07966g09gv9hznhwfdka4yk0c9j0viy9x4ldmhxl9w9scv5"; depends=[expm Formula numDeriv]; }; +BioGeoBEARS = derive { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[ape cladoRcpp FD gdata optimx phylobase plotrix rexpokit xtable]; }; +BioMark = derive { name="BioMark"; version="0.4.2"; sha256="17r4q2migmdk2vqfbr69q07cgdzwpjgs3ijmnm42srs5d3brw8cr"; depends=[glmnet MASS pls st]; }; +BioPhysConnectoR = derive { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[matrixcalc snow]; }; BioStatR = derive { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; }; Biodem = derive { name="Biodem"; version="0.3"; sha256="0wfyypr46awki2nrvhcjwacmaxrr2wvhdv9hddnf10msssflvshc"; depends=[]; }; -BiodiversityR = derive { name="BiodiversityR"; version="2.5-2"; sha256="0l23nlibv7wjmkv1jnssaab3iwm2i5wrkzjji2x9rr5131aj82gn"; depends=[vegan Rcmdr]; }; -Biograph = derive { name="Biograph"; version="2.0.4"; sha256="1mik5yvbi28xnyzha8p3xjaa064x29wgn18yx766wha7djxxr353"; depends=[etm msm Epi lubridate reshape plyr survival mstate ggplot2]; }; -BivarP = derive { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[dfoptim survival copula]; }; +BiodiversityR = derive { name="BiodiversityR"; version="2.5-2"; sha256="0l23nlibv7wjmkv1jnssaab3iwm2i5wrkzjji2x9rr5131aj82gn"; depends=[Rcmdr vegan]; }; +Biograph = derive { name="Biograph"; version="2.0.4"; sha256="1mik5yvbi28xnyzha8p3xjaa064x29wgn18yx766wha7djxxr353"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; }; +BivarP = derive { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; }; BlakerCI = derive { name="BlakerCI"; version="1.0-4"; sha256="1sa9qq5frjjcw46p3ankn7v3gj0gwn9lww6jacz8flf5qpplhn4l"; depends=[]; }; BlandAltmanLeh = derive { name="BlandAltmanLeh"; version="0.1.0"; sha256="0y35zkxiallp4x09646qb8wj9bayh7mpnjg43qmzhxkm7l95b78r"; depends=[]; }; Blaunet = derive { name="Blaunet"; version="1.0.1"; sha256="1qcp5wag4081pcjg5paryxz3hk3rqql15v891ppqc1injni7rljz"; depends=[network]; }; @@ -208,12 +213,12 @@ BoSSA = derive { name="BoSSA"; version="1.2"; sha256="191hq0np9iadks4sflg360k64x Bolstad = derive { name="Bolstad"; version="0.2-25"; sha256="1dj0ib3jndnsdx2cqsy0dz54szdx1xq3r2xqnxzk4ysng6svdym8"; depends=[]; }; Bolstad2 = derive { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; BoolNet = derive { name="BoolNet"; version="2.1.1"; sha256="0g8f2pv8s8kj84qcp2fy3h8p91ja6ap2dgxkdaf5kjv7r3hfddg0"; depends=[igraph XML]; }; -Boom = derive { name="Boom"; version="0.2"; sha256="0myb8pihjz25y9sj8b844jrkkd2x7zxyr3pg212cgkx9arby0afn"; depends=[MASS BH]; }; -BoomSpikeSlab = derive { name="BoomSpikeSlab"; version="0.5.2"; sha256="0n7kf0nkznsaajx4z4bkzjx99b56mjpd8543jc1dq6ki81yxlr1v"; depends=[Boom BH]; }; +Boom = derive { name="Boom"; version="0.2"; sha256="0myb8pihjz25y9sj8b844jrkkd2x7zxyr3pg212cgkx9arby0afn"; depends=[BH MASS]; }; +BoomSpikeSlab = derive { name="BoomSpikeSlab"; version="0.5.2"; sha256="0n7kf0nkznsaajx4z4bkzjx99b56mjpd8543jc1dq6ki81yxlr1v"; depends=[BH Boom]; }; BootPR = derive { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; Boruta = derive { name="Boruta"; version="4.0.0"; sha256="1r7bl4ab6swhks9cijhqn9gdhp2vjfhwb65fi5rzz0yvzxx97xi8"; depends=[randomForest rFerns]; }; -BradleyTerry2 = derive { name="BradleyTerry2"; version="1.0-6"; sha256="1080q7fw4yfl2y0jh3w2xz342i5yhhhavq40i3902bsmjj8g531d"; depends=[lme4 brglm gtools]; }; -BrailleR = derive { name="BrailleR"; version="0.18-1"; sha256="0v5y5v6b52kh4146bbhwpsnb5p435dk5nhv28sxi7r89fixbc20q"; depends=[nortest xtable moments knitr gridGraphics gridSVG]; }; +BradleyTerry2 = derive { name="BradleyTerry2"; version="1.0-6"; sha256="1080q7fw4yfl2y0jh3w2xz342i5yhhhavq40i3902bsmjj8g531d"; depends=[brglm gtools lme4]; }; +BrailleR = derive { name="BrailleR"; version="0.20"; sha256="1cfg5jfhal77n1pmwcj0awhnprqw6bha7q7z3s2m3q4g1ar49shv"; depends=[gridGraphics gridSVG knitr moments nortest rmarkdown xtable]; }; Brobdingnag = derive { name="Brobdingnag"; version="1.2-4"; sha256="1saxa492f32f511vw0ys55z3kgyzhswxkylw9k9ccl87zgbszf3a"; depends=[]; }; Brq = derive { name="Brq"; version="1.0"; sha256="0m01qw0mh9za1gx1vkbyvwny4k5fvmvs9dbp0504q8jqfqf4l1vj"; depends=[quantreg truncnorm]; }; BsMD = derive { name="BsMD"; version="2013.0718"; sha256="1yvazqlbmm221r7nkhrhi309gkk6vx7ji5xlvf07klya2zg20gcj"; depends=[]; }; @@ -223,91 +228,92 @@ C50 = derive { name="C50"; version="0.1.0-24"; sha256="17ay0rbm2cg2s27mh09xg0knk CADFtest = derive { name="CADFtest"; version="0.3-2"; sha256="00nsnzgjwkif7mbrw7msswjxhi9aysjdx3qg3i4mdmj1rmp7c4dc"; depends=[dynlm sandwich tseries urca]; }; CALIBERrfimpute = derive { name="CALIBERrfimpute"; version="0.1-6"; sha256="036nwnday098mawc9qlgl3jjjcdjnja1immg6xkq27hvv2xfbz82"; depends=[mice mvtnorm randomForest]; }; CALINE3 = derive { name="CALINE3"; version="1.0-2"; sha256="07w1kb7wqdi1qslpvpmqcmq6da4h7sgwv3aih4brdprym61c3rkm"; depends=[]; }; -CAM = derive { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet mboost Matrix mgcv]; }; -CAMAN = derive { name="CAMAN"; version="0.72"; sha256="10qikirv73d03ssg3sb6w3ih92ms5726b5lqw3x7r5rpbl9179rh"; depends=[sp mvtnorm]; }; -CARBayes = derive { name="CARBayes"; version="4.1"; sha256="0g4b44p3ybb92wrm42ws8yrrdzmxk454w6a3w20fbhfc2zprjilz"; depends=[MASS Rcpp CARBayesdata coda sp spam truncdist Rcpp]; }; -CARBayesST = derive { name="CARBayesST"; version="1.1"; sha256="03vp6qajag0ak4lcn0ddyxri3ndiwsc4yxi6ym5lr2v6kv674wl6"; depends=[Rcpp spam truncdist coda Rcpp]; }; -CARBayesdata = derive { name="CARBayesdata"; version="1.0"; sha256="19dhgkqpdcq1y866arb3qm7wbl348w66yl85kwajkmqgplx2pvaq"; depends=[sp shapefiles]; }; +CAM = derive { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; }; +CAMAN = derive { name="CAMAN"; version="0.72"; sha256="10qikirv73d03ssg3sb6w3ih92ms5726b5lqw3x7r5rpbl9179rh"; depends=[mvtnorm sp]; }; +CARBayes = derive { name="CARBayes"; version="4.1"; sha256="0g4b44p3ybb92wrm42ws8yrrdzmxk454w6a3w20fbhfc2zprjilz"; depends=[CARBayesdata coda MASS Rcpp sp spam truncdist]; }; +CARBayesST = derive { name="CARBayesST"; version="1.1"; sha256="03vp6qajag0ak4lcn0ddyxri3ndiwsc4yxi6ym5lr2v6kv674wl6"; depends=[coda Rcpp spam truncdist]; }; +CARBayesdata = derive { name="CARBayesdata"; version="1.0"; sha256="19dhgkqpdcq1y866arb3qm7wbl348w66yl85kwajkmqgplx2pvaq"; depends=[shapefiles sp]; }; CARE1 = derive { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; CARramps = derive { name="CARramps"; version="0.1.2"; sha256="097xxvql6qglk6x4yi7xsvr15n0yj21613zv003z0mhgvqr1n5vf"; depends=[]; }; -CARrampsOcl = derive { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[OpenCL fields]; }; +CARrampsOcl = derive { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; }; CAvariants = derive { name="CAvariants"; version="2.1"; sha256="105bj6r6i7xz95lr5g4ld9xfgyq1dn15lw117jivx76z3k2zpi59"; depends=[]; }; CBPS = derive { name="CBPS"; version="0.9"; sha256="08pc50fndpx6xvxkvqdklrp6v98w2j387frq08nlglcbfjk22i6x"; depends=[MASS MatchIt nnet numDeriv]; }; CCA = derive { name="CCA"; version="1.2"; sha256="00zy6bln22qshhlll0y0adnvb8wa1f7famqyws71b6pcnwxki5ha"; depends=[fda fields]; }; -CCAGFA = derive { name="CCAGFA"; version="1.0.4"; sha256="159gh0mx4da1gpqf5swyhg8ksclpi59p4zmzsiq5ywfpy5cjr71z"; depends=[]; }; +CCAGFA = derive { name="CCAGFA"; version="1.0.6"; sha256="19il9i7ybjg2qchmpjwkyx48l4fl7lb1zdkfpiaw3fng6ndasp1k"; depends=[]; }; CCM = derive { name="CCM"; version="1.1"; sha256="0gya1109w61ia6cq3jg2z5gmvjkv9xg71l2rxhrrf6bx1c2nsrq6"; depends=[]; }; CCP = derive { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; -CCTpack = derive { name="CCTpack"; version="1.4"; sha256="09s2ysqsz158lrah44rwvs3nlhyqlvwcj6aar2p79flf4xxdwsvk"; depends=[R2jags rjags psych mvtnorm polycor MASS]; }; +CCTpack = derive { name="CCTpack"; version="1.4"; sha256="09s2ysqsz158lrah44rwvs3nlhyqlvwcj6aar2p79flf4xxdwsvk"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; CCpop = derive { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; }; CDFt = derive { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; }; CDLasso = derive { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; -CDM = derive { name="CDM"; version="4.2-12"; sha256="18ix2l3mlk9vzv7iks16mdi4h0194bfjcvsxmya5219dfmw5vqfz"; depends=[mvtnorm Rcpp psych MASS polycor sfsmisc plyr WrightMap lattice Rcpp RcppArmadillo]; }; +CDM = derive { name="CDM"; version="4.3-0"; sha256="0xryd4l0fqa2m39zcgd6jyi6shlqxc98qgwdpg38csqmbpny4bvm"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; }; CDNmoney = derive { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; -CDVine = derive { name="CDVine"; version="1.2"; sha256="1qfjbzdfz2dydkfw3b0jjma4csn62177j5sgzh6rszf0nifsi97g"; depends=[MASS mvtnorm igraph]; }; +CDVine = derive { name="CDVine"; version="1.2"; sha256="1qfjbzdfz2dydkfw3b0jjma4csn62177j5sgzh6rszf0nifsi97g"; depends=[igraph MASS mvtnorm]; }; CEC = derive { name="CEC"; version="0.9.3"; sha256="05cgd281p0hxkni4nqb0d4l71aah3f3s6jxdnzgw8lqxaxz4194i"; depends=[]; }; -CEGO = derive { name="CEGO"; version="1.0.1108"; sha256="0klj9g656rnfqhj36r4v8y6mv4cazlzyrvws6yqa0r61abfbxy68"; depends=[MASS DEoptim]; }; +CEGO = derive { name="CEGO"; version="1.0.1108"; sha256="0klj9g656rnfqhj36r4v8y6mv4cazlzyrvws6yqa0r61abfbxy68"; depends=[DEoptim MASS]; }; CEoptim = derive { name="CEoptim"; version="1.0"; sha256="1mrv2vhrwd7hvw67ys08nilbn3f1fp3bsvlbc8ggwyl3lw957fi9"; depends=[MASS msm]; }; CFC = derive { name="CFC"; version="0.7.0"; sha256="1sl0gsx4gcbcf7bc6xf84g3lx58zraj2h51riacch2iyxl1ygspq"; depends=[abind]; }; CGP = derive { name="CGP"; version="2.0-2"; sha256="1mggv3c8525vbdfdc3yhpp4vm4zzdvbwyxim29zj0lzwjf9fkgqk"; depends=[]; }; -CHAT = derive { name="CHAT"; version="1.1"; sha256="1hl4xr4lkvb7r36gcbgax6ipqc3rsvn1r03w7fk9gf9bbyg7bkhg"; depends=[DPpackage]; }; +CHAT = derive { name="CHAT"; version="1.1"; sha256="1hl4xr4lkvb7r36gcbgax6ipqc3rsvn1r03w7fk9gf9bbyg7bkhg"; depends=[DNAcopy DPpackage]; }; CHCN = derive { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; }; -CHNOSZ = derive { name="CHNOSZ"; version="1.0.3.1"; sha256="0cmirnb8jkaxnscpkwm2a8yyzl9zaf3q323avpgg7fwwhr6c1l19"; depends=[]; }; -CHsharp = derive { name="CHsharp"; version="0.3"; sha256="0aa9v6yih6qmqsmc8zsl8k1wqsp3sp2bfwri3d37k06vfj7gwbh0"; depends=[scatterplot3d KernSmooth]; }; -CIDnetworks = derive { name="CIDnetworks"; version="0.8.1"; sha256="0k75mdlvm0rccag42pnhsni1kihpqsnj5bsrwlj7hdf7n8k1xb77"; depends=[mvtnorm msm Rcpp igraph numDeriv pbivnorm MASS Rcpp]; }; +CHNOSZ = derive { name="CHNOSZ"; version="1.0.5"; sha256="19kh4fnf6myn072hrjcibw7bhm4qbjp039vdqjq1qx3bmz28an1k"; depends=[]; }; +CHsharp = derive { name="CHsharp"; version="0.3"; sha256="0aa9v6yih6qmqsmc8zsl8k1wqsp3sp2bfwri3d37k06vfj7gwbh0"; depends=[KernSmooth scatterplot3d]; }; +CIDnetworks = derive { name="CIDnetworks"; version="0.8.1"; sha256="0k75mdlvm0rccag42pnhsni1kihpqsnj5bsrwlj7hdf7n8k1xb77"; depends=[igraph MASS msm mvtnorm numDeriv pbivnorm Rcpp]; }; CIFsmry = derive { name="CIFsmry"; version="1.0.1"; sha256="118vyiiy4iqn86n9xf84n5hrwrhzhr1mdsmyg9sm6qq6dm7zg6la"; depends=[]; }; CINID = derive { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; }; -CINOEDV = derive { name="CINOEDV"; version="2.0"; sha256="0fjpxahc55zd972p3hlw9fk4dq8hpq715xff8p98kfh29dvw9mnz"; depends=[R_matlab igraph ggplot2 reshape2]; }; -CITAN = derive { name="CITAN"; version="2014.12-1"; sha256="0hiccsg49zgcdm5iwj2vzyqhwyfw6h5fd2gasy6hlakjp102mvy2"; depends=[agop RSQLite RGtk2 hash stringi DBI]; }; +CINOEDV = derive { name="CINOEDV"; version="2.0"; sha256="0fjpxahc55zd972p3hlw9fk4dq8hpq715xff8p98kfh29dvw9mnz"; depends=[ggplot2 igraph R_matlab reshape2]; }; +CITAN = derive { name="CITAN"; version="2014.12-1"; sha256="0hiccsg49zgcdm5iwj2vzyqhwyfw6h5fd2gasy6hlakjp102mvy2"; depends=[agop DBI hash RGtk2 RSQLite stringi]; }; CLAG = derive { name="CLAG"; version="2.18.1"; sha256="0y8m6m01vw3rxwrmxvwhpiy6dd2snr0lhb026l1494y43hhqi3wy"; depends=[]; }; -CLME = derive { name="CLME"; version="2.0-2"; sha256="11krgxn3fvbwknmiz2jyidpbb0svf4frvk99spd7i53m615sai91"; depends=[MASS lme4 shiny isotone stringr prettyR]; }; +CLME = derive { name="CLME"; version="2.0-2"; sha256="11krgxn3fvbwknmiz2jyidpbb0svf4frvk99spd7i53m615sai91"; depends=[isotone lme4 MASS prettyR shiny stringr]; }; CLSOCP = derive { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; }; CMC = derive { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; }; -CMF = derive { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp Rcpp]; }; +CMF = derive { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; }; CMPControl = derive { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; +CMplot = derive { name="CMplot"; version="2.0.1"; sha256="0pja152i10i7s5lx08ai8saaa4iw3rbv03kkcnjg1y0jr5nbnmr8"; depends=[]; }; CNOGpro = derive { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; -CNVassoc = derive { name="CNVassoc"; version="2.1"; sha256="0gwyhipkvvnivdahr9mkj1b8j9wzg6g8mcsvk5rq28xdzrskz0i8"; depends=[CNVassocData mixdist mclust survival]; }; +CNVassoc = derive { name="CNVassoc"; version="2.1"; sha256="0gwyhipkvvnivdahr9mkj1b8j9wzg6g8mcsvk5rq28xdzrskz0i8"; depends=[CNVassocData mclust mixdist survival]; }; CNVassocData = derive { name="CNVassocData"; version="1.0"; sha256="17r3b1w9i9v6llawnjnrjns6jkd82m2cn9c90aif8j0bf4dmgdli"; depends=[]; }; CNprep = derive { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; COBRA = derive { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; COMMUNAL = derive { name="COMMUNAL"; version="1.0"; sha256="0smza4q0gnhskyq3fxcrs2hq3lxkyp5xf3zd6zi92962lg6s3w3n"; depends=[cluster clValid fpc rgl]; }; COMPoissonReg = derive { name="COMPoissonReg"; version="0.3.4"; sha256="1mf2q7phc2bn700yp7i2i6ccj6lrvh8b2dmibqihh76a85j1ycrq"; depends=[]; }; COP = derive { name="COP"; version="1.0-2"; sha256="1gynknplvx97hjhi7adsgq9r9lqismch1q1pqvgmz0x1wkg4jj40"; depends=[dr MASS]; }; -COPASutils = derive { name="COPASutils"; version="0.1.6"; sha256="0vi7x14ma3i4gabdb04byr4ba0209lklj3d5ql2f2vaxyb4a1hj9"; depends=[ggplot2 reshape2 dplyr kernlab stringr knitr]; }; +COPASutils = derive { name="COPASutils"; version="0.1.6"; sha256="0vi7x14ma3i4gabdb04byr4ba0209lklj3d5ql2f2vaxyb4a1hj9"; depends=[dplyr ggplot2 kernlab knitr reshape2 stringr]; }; CORE = derive { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; }; -CORElearn = derive { name="CORElearn"; version="0.9.45"; sha256="0j2lhzikh96ky4n52x0rwhknx5zdk9h78x9ygzfpr6p9x80w850f"; depends=[cluster rpart]; }; -CORM = derive { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster]; }; -COSINE = derive { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[MASS genalg]; }; -COUNT = derive { name="COUNT"; version="1.3.2"; sha256="1lb67gwznva5p046f4gjjisip5a12icp7d2g1ipizixw99c5lll8"; depends=[msme sandwich MASS]; }; +CORElearn = derive { name="CORElearn"; version="0.9.46"; sha256="1jwc3sqkbhhmn67x44iyqzvpjsnbrwhgq6yam6h6gf086nv0lmic"; depends=[cluster rpart]; }; +CORM = derive { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster limma]; }; +COSINE = derive { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; }; +COUNT = derive { name="COUNT"; version="1.3.2"; sha256="1lb67gwznva5p046f4gjjisip5a12icp7d2g1ipizixw99c5lll8"; depends=[MASS msme sandwich]; }; CP = derive { name="CP"; version="1.5"; sha256="0hzp4h7bhhxn336kkq27phplk7idwk27jjsp6zimwl8fq3ylh0dr"; depends=[survival]; }; -CPE = derive { name="CPE"; version="1.4.4"; sha256="09sqp2a0j43jr9ya9piv8575rwd5fdvwmiz4chv75r3mw8p128mn"; depends=[survival rms]; }; +CPE = derive { name="CPE"; version="1.4.4"; sha256="09sqp2a0j43jr9ya9piv8575rwd5fdvwmiz4chv75r3mw8p128mn"; depends=[rms survival]; }; CPHshape = derive { name="CPHshape"; version="1.0.1"; sha256="05krqcd4spgghp3ihv1zfql6ikd64vkqnrjghjvfki3hi3zi5k7h"; depends=[]; }; CPMCGLM = derive { name="CPMCGLM"; version="1.1"; sha256="1w8yp37vxz2cl0yqdzpyxdfq2scz2h9i4crjzjmjzpzffi45f06s"; depends=[mvtnorm plyr]; }; CR = derive { name="CR"; version="1.0"; sha256="0smb2i560dwbxg3mp1svfxmaiw193pd3klwqq0i27czf07k1xfvj"; depends=[]; }; CRAC = derive { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; }; -CRF = derive { name="CRF"; version="0.3-8"; sha256="0w9wfjlx6hvd07k0iszfyip0vn0ca5ax2d5g7hsg6pm2isnzap8a"; depends=[Rglpk Matrix]; }; +CRF = derive { name="CRF"; version="0.3-8"; sha256="0w9wfjlx6hvd07k0iszfyip0vn0ca5ax2d5g7hsg6pm2isnzap8a"; depends=[Matrix Rglpk]; }; CRM = derive { name="CRM"; version="1.1.1"; sha256="09h6xvqc2h2gxhdhc7592z93cnw16l549pn9i26ml0f0n20hljmf"; depends=[]; }; CRTSize = derive { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; }; -CSS = derive { name="CSS"; version="1.0.2"; sha256="0p0c3gfj6p58hd4398kkpjg7rhx6wh5z6qddpqnvbm24acq7nrvh"; depends=[XML stringr]; }; CTT = derive { name="CTT"; version="2.1"; sha256="0v8k54x9pib6hq3nz3m80g1a3p003f7bn8wnj9swwvacc90d6n44"; depends=[]; }; CUMP = derive { name="CUMP"; version="1.0"; sha256="0dbpgm75nbd4h8rf3ca5n4mgdn3qm4yyf2d48vlihakzw6rqbpka"; depends=[]; }; CVST = derive { name="CVST"; version="0.2-1"; sha256="17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"; depends=[kernlab Matrix]; }; -CVThresh = derive { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[wavethresh EbayesThresh]; }; +CVThresh = derive { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[EbayesThresh wavethresh]; }; CVTuningCov = derive { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; CVcalibration = derive { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; }; CaDENCE = derive { name="CaDENCE"; version="1.2.2"; sha256="1rbwm3s63dxd366bs7pdxl0zpv7svsfr3ayznach9bjjrnjk3z3g"; depends=[pso]; }; Cairo = derive { name="Cairo"; version="1.5-6"; sha256="0x5xd2xq5q8a3kzmz7f9bawg3j131rhyb3s7w34acg7rd79l1935"; depends=[]; }; CarletonStats = derive { name="CarletonStats"; version="1.1"; sha256="18pd1hi8bnbv0sdixw746xvdg9szvng422yj12mk0k50v60403xg"; depends=[]; }; -CatDyn = derive { name="CatDyn"; version="1.0-6"; sha256="07n7qwpq8b70i2f48npy0pd87w0fj5xzjg00xw53m2idikqf82pn"; depends=[optimx BB]; }; +CatDyn = derive { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[BB optimx]; }; CateSelection = derive { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; +CausalFX = derive { name="CausalFX"; version="1.0.1"; sha256="0v0diqq9fa1v9n3v5m5shvwlgmj91cbbb78243rwib1h3pyacihf"; depends=[igraph rcdd rje]; }; CausalGAM = derive { name="CausalGAM"; version="0.1-3"; sha256="0g68m2kxixwr7rx65r57m1n0qa161igc428zh9rj91fg6h4pdq4w"; depends=[gam]; }; -Causata = derive { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[XML R_utils rjson RMySQL RCurl stringr yaml boot foreach data_table glmnet ggplot2]; }; +Causata = derive { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[boot data_table foreach ggplot2 glmnet R_utils RCurl rjson RMySQL stringr XML yaml]; }; CePa = derive { name="CePa"; version="0.5"; sha256="1y2q72j8bqx509i62a2x9j40rj5bkpgx4z6fwj05ibazc1441asd"; depends=[igraph snow]; }; -CellularAutomaton = derive { name="CellularAutomaton"; version="1.1-1"; sha256="0kmw2ic161xwalqa63hznic4n4hdz20hsilf2awlcldg7m9si1zd"; depends=[R_oo R_methodsS3]; }; +CellularAutomaton = derive { name="CellularAutomaton"; version="1.1-1"; sha256="0kmw2ic161xwalqa63hznic4n4hdz20hsilf2awlcldg7m9si1zd"; depends=[R_methodsS3 R_oo]; }; CensRegMod = derive { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; }; CerioliOutlierDetection = derive { name="CerioliOutlierDetection"; version="1.0.8"; sha256="0n67y7ah496wck9hlrphya9k753gk44v7zgfz4s2a5ii49739zqi"; depends=[robustbase]; }; CfEstimateQuantiles = derive { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; -ChainLadder = derive { name="ChainLadder"; version="0.2.0"; sha256="03gwavmimh4isrc6gpn72m52sqx1aj0prshzsb0531g45qxmvw9x"; depends=[systemfit statmod Matrix actuar Hmisc reshape2 MASS lattice tweedie]; }; +ChainLadder = derive { name="ChainLadder"; version="0.2.0"; sha256="03gwavmimh4isrc6gpn72m52sqx1aj0prshzsb0531g45qxmvw9x"; depends=[actuar Hmisc lattice MASS Matrix reshape2 statmod systemfit tweedie]; }; ChargeTransport = derive { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; CheckDigit = derive { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; ChemoSpec = derive { name="ChemoSpec"; version="4.0.1"; sha256="08z85g0r38xh57h3f4hdcg8wlaklpqmxvjla1562f3lxbqm1r9k1"; depends=[plyr rgl]; }; @@ -316,147 +322,158 @@ ChemometricsWithRData = derive { name="ChemometricsWithRData"; version="0.1.3"; ChoiceModelR = derive { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; CircE = derive { name="CircE"; version="1.1"; sha256="14bja3zv9wg389m6khmsy3q12hhnfcp49rvrmw47y6fh5m7ihrz2"; depends=[]; }; CircNNTSR = derive { name="CircNNTSR"; version="2.1"; sha256="1rl17kw6bl5xf7pgsc4im12i2kqz4a3b11vzzlb6wfl5yck6iff5"; depends=[]; }; -CircStats = derive { name="CircStats"; version="0.2-4"; sha256="1f2pf1ppp843raa82s2qxm3xlcv6zpi578zc4pl0d7qyxqnh603s"; depends=[MASS boot]; }; +CircOutlier = derive { name="CircOutlier"; version="3.1.3"; sha256="103d5fbwzbj9ribl2vzrj1lxv0n3hcygjrf5k4kqm0kfnql91k2s"; depends=[CircStats circular]; }; +CircStats = derive { name="CircStats"; version="0.2-4"; sha256="1f2pf1ppp843raa82s2qxm3xlcv6zpi578zc4pl0d7qyxqnh603s"; depends=[boot MASS]; }; CityPlot = derive { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; Ckmeans_1d_dp = derive { name="Ckmeans.1d.dp"; version="3.3.1"; sha256="0gzwcg6f3p1vr30lyniqiq4893kjxri4y2vjzh6qrldnay42kqf9"; depends=[]; }; -Claddis = derive { name="Claddis"; version="0.1"; sha256="1dxsz62x856lpapw5xpvvr2qpyj3j93m9dn07m0bjbpmx0y0bm9c"; depends=[gdata ape phytools strap]; }; +Claddis = derive { name="Claddis"; version="0.1"; sha256="1dxsz62x856lpapw5xpvvr2qpyj3j93m9dn07m0bjbpmx0y0bm9c"; depends=[ape gdata phytools strap]; }; ClickClust = derive { name="ClickClust"; version="1.1.4"; sha256="17r8jzhzwqa5h04bxdcyv31jhk6c709sx5m1z53jh3yf9zmkilvi"; depends=[]; }; ClimClass = derive { name="ClimClass"; version="1.0"; sha256="07jl8vwqyyj4q2hav8qbg69yjs73s3kbms5bd9hqs1y938rrp2l5"; depends=[geosphere ggplot2 reshape2]; }; ClueR = derive { name="ClueR"; version="1.0"; sha256="1ak8pgbzm5xrk7pjnkbiqdwyvvyvrm6k6h50ycc86w3zy7fnqhds"; depends=[e1071]; }; +ClustMMDD = derive { name="ClustMMDD"; version="1.0.1"; sha256="0pzascdiadhvx4xjxa6kjw5kkmj3izphz2f86jnimyn5fid7cl02"; depends=[Rcpp]; }; ClustOfVar = derive { name="ClustOfVar"; version="0.8"; sha256="17y8q2g4yjxs2jl1s8n5svxi021nlm0phs1g5hcnfxzpadq84wbs"; depends=[]; }; -ClustVarLV = derive { name="ClustVarLV"; version="1.3.2"; sha256="0lnrpvfkhsmjjaimxqjrvwv4wrh6mxl6ifr9dj1kfkmnparyp6fp"; depends=[Rcpp Rcpp]; }; +ClustVarLV = derive { name="ClustVarLV"; version="1.4.0"; sha256="1dm4vyfq4mf9y2ha32fhirqyss4yjk5zxrb9i3fx4i8kbaw6160z"; depends=[Rcpp]; }; CoClust = derive { name="CoClust"; version="0.3-1"; sha256="00i0dghd35s91kkkxj1ywa5i93752mfa5527ifclw4xxxshppva8"; depends=[copula gtools]; }; -CoImp = derive { name="CoImp"; version="0.2-3"; sha256="04n0drx98hi8hmlb5xwl87ylv03j1ld04vp9d8s5sphvm9bbx690"; depends=[copula nnet gtools locfit]; }; +CoImp = derive { name="CoImp"; version="0.2-3"; sha256="04n0drx98hi8hmlb5xwl87ylv03j1ld04vp9d8s5sphvm9bbx690"; depends=[copula gtools locfit nnet]; }; CoinMinD = derive { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; -CollocInfer = derive { name="CollocInfer"; version="1.0.1"; sha256="0wfk3qw28msz3wqm5xmivjgi18kqv1s6w76vh71zq777d6a7al6i"; depends=[fda deSolve MASS Matrix spam]; }; +CollocInfer = derive { name="CollocInfer"; version="1.0.1"; sha256="0wfk3qw28msz3wqm5xmivjgi18kqv1s6w76vh71zq777d6a7al6i"; depends=[deSolve fda MASS Matrix spam]; }; +ColorPalette = derive { name="ColorPalette"; version="1.0-0"; sha256="0mh1fjcl80fc5prrypl42aqj1svzs6600n250a5sah276bd0zzk9"; depends=[]; }; CombMSC = derive { name="CombMSC"; version="1.4.2"; sha256="1wkawxisn9alpwrymja8dla8n25z2fhai3l2xhin0b914y2kai09"; depends=[]; }; CombinS = derive { name="CombinS"; version="1.1"; sha256="18wanir5vqk5i65hd6gr2za1xd26yfa0c3c029dbxsrsczwmb9xi"; depends=[]; }; CombinePValue = derive { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; }; +CommT = derive { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; }; CommonJavaJars = derive { name="CommonJavaJars"; version="1.0-5"; sha256="0kwf504g1izyy7hxss21dgz26w0spxibdlacrjdh7q10z799hfhh"; depends=[]; }; CommonTrend = derive { name="CommonTrend"; version="0.7-1"; sha256="088pg2hy2g2jgs84xawrnsf7gpvrpqjsimkx7g0i5r5fmkx169f9"; depends=[MASS urca]; }; CommunityCorrelogram = derive { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; }; -Comp2ROC = derive { name="Comp2ROC"; version="1.1"; sha256="0vhpw6k9barcx5fl3kw3r7152mcrlpr127i5b70bx64g8g9ffs1v"; depends=[ROCR boot]; }; -CompGLM = derive { name="CompGLM"; version="1.0"; sha256="04bjal92r0m7is5ygqpd0mdz3fb3pwcr7rc3mbxg9sg57nff3kf5"; depends=[Rcpp Rcpp]; }; +Comp2ROC = derive { name="Comp2ROC"; version="1.1"; sha256="0vhpw6k9barcx5fl3kw3r7152mcrlpr127i5b70bx64g8g9ffs1v"; depends=[boot ROCR]; }; +CompGLM = derive { name="CompGLM"; version="1.0"; sha256="04bjal92r0m7is5ygqpd0mdz3fb3pwcr7rc3mbxg9sg57nff3kf5"; depends=[Rcpp]; }; CompLognormal = derive { name="CompLognormal"; version="3.0"; sha256="1dhgr9l713l2n889bpa47lbg2qab0fz0r15qa928c0b9nz688ddm"; depends=[numDeriv]; }; CompQuadForm = derive { name="CompQuadForm"; version="1.4.1"; sha256="1kv4bdkwidkjw0hgn2krv42p9v1a03p47g0p03lja3flhfbmiifj"; depends=[]; }; CompRandFld = derive { name="CompRandFld"; version="1.0.3-4"; sha256="1a3j5j50fz3f8vkvdmfccv5hn00spk08xanadqxpdy8pn925gqqb"; depends=[]; }; CompareTests = derive { name="CompareTests"; version="1.0"; sha256="098axl20jid35pqvgiwk6h91waafigwks6n5f4pg7xxx1fifks4f"; depends=[]; }; -Compind = derive { name="Compind"; version="1.0"; sha256="13gfsbjaciign8cswsibdj9a4rwj5afwrk4g1x4fyihfhnm4qx7m"; depends=[Benchmarking psych boot Hmisc MASS GPArotation lpSolve nonparaeff]; }; +Compind = derive { name="Compind"; version="1.0"; sha256="13gfsbjaciign8cswsibdj9a4rwj5afwrk4g1x4fyihfhnm4qx7m"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff psych]; }; Compounding = derive { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; -ConConPiWiFun = derive { name="ConConPiWiFun"; version="0.4.4"; sha256="1dq9nlg04xs2n9g62y4gbl8ay4vsa25d7d7dra7q8zq6a561hzz5"; depends=[Rcpp Rcpp]; }; +ConConPiWiFun = derive { name="ConConPiWiFun"; version="0.4.4"; sha256="1dq9nlg04xs2n9g62y4gbl8ay4vsa25d7d7dra7q8zq6a561hzz5"; depends=[Rcpp]; }; ConSpline = derive { name="ConSpline"; version="1.0"; sha256="04zwnnp8rmzacfl9skd1lybqwxja0527h4xwcx5ki2z8c0zvvpi8"; depends=[coneproj]; }; Conake = derive { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; CondReg = derive { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; ConjointChecks = derive { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; ConnMatTools = derive { name="ConnMatTools"; version="0.1.5"; sha256="02cv2rlfp9shwqc9nwb8278akmwv7yvviwl23jglzsyh721dpqkr"; depends=[]; }; ConvCalendar = derive { name="ConvCalendar"; version="1.2"; sha256="0yq9a42gw3pxxwvpbj6zz5a5zl7g5vkswq3mjjv5r28zwa3v05vc"; depends=[]; }; -ConvergenceConcepts = derive { name="ConvergenceConcepts"; version="1.1"; sha256="0878fz33jxh5cf72lv0lga48wq2hqa4wz6m59111k59pzrsli344"; depends=[tkrplot lattice]; }; +ConvergenceConcepts = derive { name="ConvergenceConcepts"; version="1.1"; sha256="0878fz33jxh5cf72lv0lga48wq2hqa4wz6m59111k59pzrsli344"; depends=[lattice tkrplot]; }; Copula_Markov = derive { name="Copula.Markov"; version="1.0"; sha256="028rmpihyz9xr4r305lbcbb0y22jw1szmhw5iznv5zma507grbl3"; depends=[]; }; -CopulaREMADA = derive { name="CopulaREMADA"; version="0.5-1"; sha256="1lrqx07986f7cv0ws1dd9p0dza0qkc67p8mp7rdq58b9f1h7yk2r"; depends=[statmod]; }; +CopulaREMADA = derive { name="CopulaREMADA"; version="0.9"; sha256="0fhd4g8157rmkda5dygvnvb50f8dz31wlg1x432g9ra8fw7bdq01"; depends=[matlab statmod tensor]; }; CopulaRegression = derive { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; }; CopyDetect = derive { name="CopyDetect"; version="1.1"; sha256="0h9bf7ay5yr6dwk7q28b6xxfzy6smljkq6qwjkzfscy5hnmwxkpa"; depends=[irtoys]; }; -CorReg = derive { name="CorReg"; version="1.0"; sha256="061lb443wydlrgrnrpi9ibrwa0xw328wcyhsx7lndzjrni9mhcbp"; depends=[Rcpp lars Rmixmod elasticnet corrplot Matrix ridge rpart MASS mvtnorm mclust Rcpp RcppEigen]; }; -CorrBin = derive { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat geepack dirmult mvtnorm]; }; +CorReg = derive { name="CorReg"; version="1.0.5"; sha256="1b7l17i33bqvdzgqw5vc73fnpdgqbr01456qgmxls80ji8qjiv9x"; depends=[corrplot elasticnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen ridge Rmixmod rpart]; }; +CorrBin = derive { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat dirmult geepack mvtnorm]; }; CorrMixed = derive { name="CorrMixed"; version="0.1-11"; sha256="18n70yx6yysvcn3wsf1zmnp4z2hs3783mr1n0pjp2ph5yd9xk4mg"; depends=[nlme psych]; }; Correlplot = derive { name="Correlplot"; version="1.0-2"; sha256="0prxnbi7ga5d23i0i4qpynfb3zrsgjxam47km6nsj1prakdkrq7w"; depends=[calibrate xtable]; }; -CosmoPhotoz = derive { name="CosmoPhotoz"; version="0.1"; sha256="04girid6wvgyrk8ha81mdqjx2mmzifz57l1hzcgrdnzmjmm3vlmp"; depends=[ggplot2 ggthemes arm COUNT gridExtra pcaPP mvtnorm shiny]; }; -CountsEPPM = derive { name="CountsEPPM"; version="2.0"; sha256="0bwd2jc8g62xpvnnq759cxhjvip94abbj63yk6n1awlh5hb4ni3b"; depends=[Formula expm numDeriv]; }; -CovSel = derive { name="CovSel"; version="1.1"; sha256="13dh97857h3r684yw1bzyr1rkpk8l7sshgy9hvg5y95csgai2qhw"; depends=[MASS dr np boot cubature]; }; -CoxBoost = derive { name="CoxBoost"; version="1.4"; sha256="1bxkanc8zr4g3abn4ds5wqibv65flvm4y648fs9s0l4vc9vmyshg"; depends=[survival Matrix prodlim]; }; +CosmoPhotoz = derive { name="CosmoPhotoz"; version="0.1"; sha256="04girid6wvgyrk8ha81mdqjx2mmzifz57l1hzcgrdnzmjmm3vlmp"; depends=[arm COUNT ggplot2 ggthemes gridExtra mvtnorm pcaPP shiny]; }; +CountsEPPM = derive { name="CountsEPPM"; version="2.0"; sha256="0bwd2jc8g62xpvnnq759cxhjvip94abbj63yk6n1awlh5hb4ni3b"; depends=[expm Formula numDeriv]; }; +CovSel = derive { name="CovSel"; version="1.1"; sha256="13dh97857h3r684yw1bzyr1rkpk8l7sshgy9hvg5y95csgai2qhw"; depends=[boot cubature dr MASS np]; }; +CoxBoost = derive { name="CoxBoost"; version="1.4"; sha256="1bxkanc8zr4g3abn4ds5wqibv65flvm4y648fs9s0l4vc9vmyshg"; depends=[Matrix prodlim survival]; }; CoxRidge = derive { name="CoxRidge"; version="0.9.2"; sha256="0p65mg4hzdgks03k1lj90yj6qbk50s94rwvcwzkb5xxxwrijd10r"; depends=[survival]; }; -Coxnet = derive { name="Coxnet"; version="0.1-1"; sha256="07ivs47lj0l84mk4r7bvzncvddspq4yl19aibii5pvjmzfzdgymp"; depends=[Matrix Rcpp Rcpp RcppEigen]; }; +Coxnet = derive { name="Coxnet"; version="0.1-1"; sha256="07ivs47lj0l84mk4r7bvzncvddspq4yl19aibii5pvjmzfzdgymp"; depends=[Matrix Rcpp RcppEigen]; }; CpGFilter = derive { name="CpGFilter"; version="1.0"; sha256="07426xlmx0ya3pi1y5c24zr58wr024m38y036h9gz26pw7bpawy2"; depends=[]; }; CpGassoc = derive { name="CpGassoc"; version="2.50"; sha256="052mzkcp7510dm12winmwpxz6dvy54aziff0mn3nzy0xbk5v1fw4"; depends=[nlme]; }; -Cprob = derive { name="Cprob"; version="1.2.4"; sha256="0zird0l0kx2amrp4qjvlagw55pk9jrx0536gq7bvajj8avyvyykr"; depends=[prodlim tpr geepack lgtdl lattice]; }; +Cprob = derive { name="Cprob"; version="1.2.4"; sha256="0zird0l0kx2amrp4qjvlagw55pk9jrx0536gq7bvajj8avyvyykr"; depends=[geepack lattice lgtdl prodlim tpr]; }; CreditMetrics = derive { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; -Crossover = derive { name="Crossover"; version="0.1-14"; sha256="0d35am446z1pj7iz2zk1fvmp3xn5nhz3pgj7rwhmj77ad8vy8p8b"; depends=[rJava CommonJavaJars JavaGD ggplot2 MASS crossdes xtable Matrix multcomp digest Rcpp RcppArmadillo]; }; -CrypticIBDcheck = derive { name="CrypticIBDcheck"; version="0.3-1"; sha256="1lrpwgvsif1wnp19agh8fs3nhlb7prr3hhqg28fi4ikdd1l2j3r4"; depends=[rJPSGCS car ellipse]; }; +Crossover = derive { name="Crossover"; version="0.1-14"; sha256="0d35am446z1pj7iz2zk1fvmp3xn5nhz3pgj7rwhmj77ad8vy8p8b"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; +CryptRndTest = derive { name="CryptRndTest"; version="1.0.5"; sha256="0ypqwzn9r9x7l4wzz6vqnirmjx7zrbx0jck4wpy83w1jvx02qcqv"; depends=[copula kSamples LambertW MissMech sfsmisc tseries]; }; +CrypticIBDcheck = derive { name="CrypticIBDcheck"; version="0.3-1"; sha256="1lrpwgvsif1wnp19agh8fs3nhlb7prr3hhqg28fi4ikdd1l2j3r4"; depends=[car chopsticks ellipse rJPSGCS]; }; Cubist = derive { name="Cubist"; version="0.0.18"; sha256="176k9l7vrxamahvw346aysj19j7il9a2v6ka6dzmk0qq7hf3w9ka"; depends=[lattice reshape2]; }; -D2C = derive { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[randomForest gRbase lazy MASS corpcor foreach]; }; +D2C = derive { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; }; DAAG = derive { name="DAAG"; version="1.20"; sha256="05jlsrs0frk9ky20h17c5vj9d4j28c9n0a1jww5lssacimn1d4x5"; depends=[lattice latticeExtra]; }; -DAAGbio = derive { name="DAAGbio"; version="0.62"; sha256="18m4vq8vv0yi79na62nrm0cy1nlk7bg0xbddzxv5gpkmzi1i6m9s"; depends=[]; }; +DAAGbio = derive { name="DAAGbio"; version="0.62"; sha256="18m4vq8vv0yi79na62nrm0cy1nlk7bg0xbddzxv5gpkmzi1i6m9s"; depends=[limma]; }; DAAGxtras = derive { name="DAAGxtras"; version="0.8-4"; sha256="18lg13mbyharidj5j7ncx8s7d72v2hcnqr00vilhf3djk2mjq7xn"; depends=[]; }; -DAGGER = derive { name="DAGGER"; version="1.4"; sha256="0b2hzv001xhch7pqgb53lfpdcjwg5lj33i6pb884l1kx92svjfr7"; depends=[Rglpk quadprog Matrix]; }; +DAGGER = derive { name="DAGGER"; version="1.4"; sha256="0b2hzv001xhch7pqgb53lfpdcjwg5lj33i6pb884l1kx92svjfr7"; depends=[Matrix quadprog Rglpk]; }; +DAISIE = derive { name="DAISIE"; version="1.0.1"; sha256="1dhfkjgksxy39siz5mf97sw2gyb0jvy44ndy0asdmplwhmqrc4md"; depends=[deSolve]; }; DAKS = derive { name="DAKS"; version="2.1-2"; sha256="1817s7xd4h2zzaagmnw423qaxpa5fmxi3fh4h9hm2ra9w7nh6ljj"; depends=[relations sets]; }; DALY = derive { name="DALY"; version="1.4.0"; sha256="1gx4q24149q1ipsrinswrm37z1nf4swgq188zsc1xifmw9l28v11"; depends=[]; }; -DAMOCLES = derive { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[geiger caper ape deSolve matrixStats expm picante]; }; -DAMisc = derive { name="DAMisc"; version="1.3"; sha256="0d6fkg0c5a2jx1khv013lmahx5clyzab9w2dsi5zwxnf0jz5m8fc"; depends=[car effects lattice sm MASS nnet pscl gdata xtable]; }; -DATforDCEMRI = derive { name="DATforDCEMRI"; version="0.55"; sha256="0v26a1gi8l21ga5nqcnyfaa7gc8zxq6wk95b96ajgpdybb0l9s53"; depends=[xtable akima R_oo R_methodsS3 matlab lattice locfit]; }; +DAMOCLES = derive { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; }; +DAMisc = derive { name="DAMisc"; version="1.3"; sha256="0d6fkg0c5a2jx1khv013lmahx5clyzab9w2dsi5zwxnf0jz5m8fc"; depends=[car effects gdata lattice MASS nnet pscl sm xtable]; }; +DATforDCEMRI = derive { name="DATforDCEMRI"; version="0.55"; sha256="0v26a1gi8l21ga5nqcnyfaa7gc8zxq6wk95b96ajgpdybb0l9s53"; depends=[akima lattice locfit matlab R_methodsS3 R_oo xtable]; }; DBFTest = derive { name="DBFTest"; version="1.0"; sha256="0h83ic16z0lg7grjh4jbrxf672qchqv4zzypm2b1mhmzl01jn1wg"; depends=[]; }; DBGSA = derive { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; DBI = derive { name="DBI"; version="0.3.1"; sha256="0xj5baxwnhl23rd5nskhjvranrwrc68f3xlyrklglipi41bm69hw"; depends=[]; }; -DBKGrad = derive { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[minpack_lm SDD TSA lattice]; }; -DCGL = derive { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph]; }; +DBKGrad = derive { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; }; +DCGL = derive { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; DCL = derive { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; }; -DCluster = derive { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot spdep MASS]; }; -DDD = derive { name="DDD"; version="2.7"; sha256="06nnfn84vhfix8ks08y3kar2cpm63fqghf9y2dhgrnb4midpk5ig"; depends=[deSolve ape ade4]; }; +DCluster = derive { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot MASS spdep]; }; +DDD = derive { name="DDD"; version="2.7"; sha256="06nnfn84vhfix8ks08y3kar2cpm63fqghf9y2dhgrnb4midpk5ig"; depends=[ade4 ape deSolve]; }; DDHFm = derive { name="DDHFm"; version="1.1.1"; sha256="03zs2zbrhjcb321baghva7b8y61c8p9z6bfj2vg9cvadpb0260nk"; depends=[]; }; -DDIwR = derive { name="DDIwR"; version="0.2-0"; sha256="0dqbldl5c6b8i5q3yk0hwd12lp8z9j4ilnmsqrkj69fv7mys9q3k"; depends=[XML foreign]; }; +DDIwR = derive { name="DDIwR"; version="0.2-0"; sha256="0dqbldl5c6b8i5q3yk0hwd12lp8z9j4ilnmsqrkj69fv7mys9q3k"; depends=[foreign XML]; }; DECIDE = derive { name="DECIDE"; version="1.2"; sha256="18kn2pm9r0ims2k1jfsfzh258wwxz0xg86rsbwgq6szh0azlq3qy"; depends=[]; }; DEEPR = derive { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; DEMEtics = derive { name="DEMEtics"; version="0.8-7"; sha256="1s59qim60d4gp5rxjacdbmxdbpdm7cy9samn088w8fs0q232vjjx"; depends=[]; }; -DESnowball = derive { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue combinat MASS cluster]; }; +DESP = derive { name="DESP"; version="0.1-3"; sha256="18dx1ljc8radxdm57n0xcnza3w9wjl1zi60azjrazzfpwyjldc9l"; depends=[graph MASS Matrix RBGL SparseM]; }; +DESnowball = derive { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; }; DEoptim = derive { name="DEoptim"; version="2.2-3"; sha256="0pcs7kkhad139c3nhmg7bkac1av4siknfg59lpknwwrsxbz208dg"; depends=[]; }; DEoptimR = derive { name="DEoptimR"; version="1.0-2"; sha256="00viy7x3br3094az635lmjydm826d48vv2f14rwmdhqmv03066kq"; depends=[]; }; -DFIT = derive { name="DFIT"; version="1.0-2"; sha256="1kn3av6pnkmf9703yp3cn0zbdzjzxrlm6nbbcg7lwv9550jw2c4n"; depends=[simex mvtnorm ggplot2]; }; -DIFlasso = derive { name="DIFlasso"; version="1.0-1"; sha256="048d5x9nzksphsdk9lwfagl165bb40r0pvjq2ihvhqvxspgpar4b"; depends=[grplasso penalized miscTools]; }; +DFIT = derive { name="DFIT"; version="1.0-2"; sha256="1kn3av6pnkmf9703yp3cn0zbdzjzxrlm6nbbcg7lwv9550jw2c4n"; depends=[ggplot2 mvtnorm simex]; }; +DIFlasso = derive { name="DIFlasso"; version="1.0-1"; sha256="048d5x9nzksphsdk9lwfagl165bb40r0pvjq2ihvhqvxspgpar4b"; depends=[grplasso miscTools penalized]; }; DIFtree = derive { name="DIFtree"; version="1.0.0"; sha256="08s6ba44517xq783fysksb1h53zkqsk7zakaibi1c2npq1gzny9p"; depends=[penalized plotrix]; }; DIME = derive { name="DIME"; version="1.2"; sha256="11l6mk6i3kqphrnq4iwk4b0ridbbpg2pr4pyqaqbsb06ng899xw0"; depends=[]; }; DIRECT = derive { name="DIRECT"; version="1.0"; sha256="129bx45zmd6h7j6ilbzj2hjg4bcdc08dvm2igggi8ajndl1l5q9j"; depends=[]; }; -DLMtool = derive { name="DLMtool"; version="1.34"; sha256="0ir1131r408ya235k7syg854bfgsim39hh2k1498n5hrbaa99xfx"; depends=[snowfall boot MASS]; }; +DLMtool = derive { name="DLMtool"; version="1.35"; sha256="1qcc5q35a68m468ip1mhij2g0qzz5fhcjzax11a8n2fl9x2s9d57"; depends=[boot MASS snowfall]; }; DMR = derive { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; }; -DMwR = derive { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[lattice xts quantmod zoo abind rpart class ROCR]; }; -DNAprofiles = derive { name="DNAprofiles"; version="0.3.1"; sha256="0chsndrmanb2swmhfan9iz1bzz3jsvk24n7j9fnjxibckmn2fdpv"; depends=[RcppProgress Rcpp bit Rcpp RcppProgress]; }; -DNAtools = derive { name="DNAtools"; version="0.1-21"; sha256="1ncx2rmxb0ip804x6xznfv8brjpp518fhnm1653mlrsl3hpzrh88"; depends=[Rsolnp multicool Rcpp Rcpp]; }; -DNMF = derive { name="DNMF"; version="1.0"; sha256="0s484hzzvvkqdh4s5cb6znz26wx07f9k7y940ghx3dkdc7rb0hrx"; depends=[]; }; -DOBAD = derive { name="DOBAD"; version="1.0.4"; sha256="1hslwgs4q05xm29my5cq6g3vvjc0arvdmlx734wardj9dy29p1v5"; depends=[numDeriv lattice]; }; +DMwR = derive { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; }; +DNAprofiles = derive { name="DNAprofiles"; version="0.3.1"; sha256="0chsndrmanb2swmhfan9iz1bzz3jsvk24n7j9fnjxibckmn2fdpv"; depends=[bit Rcpp RcppProgress]; }; +DNAtools = derive { name="DNAtools"; version="0.1-21"; sha256="1ncx2rmxb0ip804x6xznfv8brjpp518fhnm1653mlrsl3hpzrh88"; depends=[multicool Rcpp Rsolnp]; }; +DNMF = derive { name="DNMF"; version="1.3"; sha256="09yp6x6vd44ahklcag96fpjgyphyn45rkqkbwr1n36a2d8vxk9nc"; depends=[doParallel foreach gplots Matrix]; }; +DOBAD = derive { name="DOBAD"; version="1.0.4"; sha256="1hslwgs4q05xm29my5cq6g3vvjc0arvdmlx734wardj9dy29p1v5"; depends=[lattice numDeriv]; }; DOvalidation = derive { name="DOvalidation"; version="0.1.0"; sha256="0vm4sxbchkj2hk91xnzj6lpj05jg2zcinlbcamy0x1lrbjffn9zk"; depends=[]; }; DPpackage = derive { name="DPpackage"; version="1.1-6"; sha256="01qdl6cp6wkddl9fwwpxwvyhb7lpjxis6wnbm2s288y2n9wi4j24"; depends=[MASS nlme survival]; }; DPw = derive { name="DPw"; version="1.1.3"; sha256="1cw9qig5z2nfp2b3k4ng5hpar9izd3d6jihj93mkc0rqcli2wzp1"; depends=[fOptions]; }; DSBayes = derive { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; DSL = derive { name="DSL"; version="0.1-5"; sha256="0k320cmim9mvi5cmr6964h9i2jbskh76xws3p6zsfakk63ndg3rr"; depends=[]; }; -DSpat = derive { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[spatstat RandomFields rgeos mgcv sp]; }; -DSsim = derive { name="DSsim"; version="1.0.3"; sha256="01kkpzs0prcq43y4nmyaw39bgjabr99xxs2hn3fmb4ka46xj0bfb"; depends=[shapefiles splancs mrds mgcv]; }; -DStree = derive { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[rpart pec Ecdat rpart_plot survival Rcpp Rcpp]; }; +DSpat = derive { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; }; +DSsim = derive { name="DSsim"; version="1.0.3"; sha256="01kkpzs0prcq43y4nmyaw39bgjabr99xxs2hn3fmb4ka46xj0bfb"; depends=[mgcv mrds shapefiles splancs]; }; +DStree = derive { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; }; +DSviaDRM = derive { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; +DT = derive { name="DT"; version="0.1"; sha256="0mj7iiy1gglw7kixybmb7kr1bcl5r006zcb3klkw7p6vvvzdm6qj"; depends=[htmltools htmlwidgets magrittr]; }; DTComPair = derive { name="DTComPair"; version="1.0.3"; sha256="1af2293ckkpz0gjcibgzzvz37852cav4wa4girpc87yn3p4ajlri"; depends=[gee PropCIs]; }; DTDA = derive { name="DTDA"; version="2.1-1"; sha256="0hi2qjcwd6zrzx87mdn1kns5f2h6jh7sz9jpgbi0p0i80xg8jnn3"; depends=[]; }; DTK = derive { name="DTK"; version="3.5"; sha256="0nxcvx25by2nfi47samzpfrd65qpgvcgd5hnq9psx83gv502g55l"; depends=[]; }; DTMCPack = derive { name="DTMCPack"; version="0.1-2"; sha256="0bibas5cf06qq834x9q2l2fyh6q9wrg07k8cn6almcyirzax6811"; depends=[]; }; -DTR = derive { name="DTR"; version="1.6"; sha256="186qgrx9alzmj1vdy2yvfqs5xgidmwddm0zgg041s5q992cih36g"; depends=[survival ggplot2 gridExtra aod proto]; }; -DVHmetrics = derive { name="DVHmetrics"; version="0.3"; sha256="1ndrzd5q12kabpk3yj95s24kn7ri61w1h4aa50zw9qb12f5dzc98"; depends=[ggplot2 reshape2 shiny KernSmooth markdown]; }; +DTR = derive { name="DTR"; version="1.6"; sha256="186qgrx9alzmj1vdy2yvfqs5xgidmwddm0zgg041s5q992cih36g"; depends=[aod ggplot2 gridExtra proto survival]; }; +DVHmetrics = derive { name="DVHmetrics"; version="0.3"; sha256="1ndrzd5q12kabpk3yj95s24kn7ri61w1h4aa50zw9qb12f5dzc98"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; }; +DYM = derive { name="DYM"; version="0.1.1"; sha256="0k6iqn1397by9pg31m3ypbnn85zv192ghsn4gpnsfhqfcp18q4d4"; depends=[]; }; Daim = derive { name="Daim"; version="1.1.0"; sha256="19s0p3a4db89i169n2jz7lf8r7pdmrksw7m3cp9n275b5h8yjimx"; depends=[rms]; }; DandEFA = derive { name="DandEFA"; version="1.5"; sha256="0d82rjkgqf4w7qg7irlqvzzav1f23i2gmygkbf8jycaa6xhli80d"; depends=[gplots polycor]; }; +Dark = derive { name="Dark"; version="0.9.4"; sha256="0paw34zhbi8k6pjgykxxqhpjgl8qr340dv091r9931q4mm215j2n"; depends=[]; }; DatABEL = derive { name="DatABEL"; version="0.9-6"; sha256="1w0w3gwacqrbqjdcngdp44d2gb16pq9grq2f8j2bhbxc4nkx12n1"; depends=[]; }; DataCombine = derive { name="DataCombine"; version="0.2.9"; sha256="1yvpv28fwkifiiyzj121dhzwzp06fncms5jbwpvc3nkq1bpzm2mk"; depends=[data_table dplyr]; }; Davies = derive { name="Davies"; version="1.1-8"; sha256="1wp7ifbs4vqfrn4vwh09lc53yiagpww91m5mxmcr62mjbw8q7zhr"; depends=[]; }; -Deducer = derive { name="Deducer"; version="0.7-7"; sha256="1x97rz92v1hx30fdmgd1lnzydgygjp6zh20v082qymvh997l1zzd"; depends=[ggplot2 JGR car MASS rJava e1071 scales plyr foreign multcomp effects]; }; +Deducer = derive { name="Deducer"; version="0.7-7"; sha256="1x97rz92v1hx30fdmgd1lnzydgygjp6zh20v082qymvh997l1zzd"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeducerExtras = derive { name="DeducerExtras"; version="1.7"; sha256="0sngsq31469a74y7nhskl82fwy2i0ga68m9g6b1xyhxz1a8kgvlg"; depends=[Deducer irr rJava]; }; DeducerPlugInExample = derive { name="DeducerPlugInExample"; version="0.2-0"; sha256="03aw7wr957xzw920ybyzxnck5kx0q2xpcrpq8jh2afyzszy6hzbi"; depends=[Deducer]; }; -DeducerPlugInScaling = derive { name="DeducerPlugInScaling"; version="0.1-0"; sha256="1qg11vi4szznchh54p9345jbmrfzfr9z5l3x5xz4m86myjkys1mb"; depends=[Deducer psych GPArotation mvnormtest irr klaR]; }; -DeducerSpatial = derive { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[JavaGD Deducer sp maptools OpenStreetMap scales rgdal UScensus2010 Hmisc]; }; +DeducerPlugInScaling = derive { name="DeducerPlugInScaling"; version="0.1-0"; sha256="1qg11vi4szznchh54p9345jbmrfzfr9z5l3x5xz4m86myjkys1mb"; depends=[Deducer GPArotation irr klaR mvnormtest psych]; }; +DeducerSpatial = derive { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; }; DeducerSurvival = derive { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; }; -DeducerText = derive { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer tm wordcloud RColorBrewer SnowballC]; }; -Delaporte = derive { name="Delaporte"; version="2.2-2"; sha256="1smx8vbi1kvfij00aq0fzj03sxagnzn9vfws0f5973bp3q72x86q"; depends=[Rcpp Rcpp]; }; -Demerelate = derive { name="Demerelate"; version="0.8-1"; sha256="1qngwlzzpd2cmij5ldrmhcn12s9yxd0rargc5vzvkrwcqpkgylkn"; depends=[Formula fts sfsmisc vegan mlogit]; }; +DeducerText = derive { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; +Delaporte = derive { name="Delaporte"; version="2.2-2"; sha256="1smx8vbi1kvfij00aq0fzj03sxagnzn9vfws0f5973bp3q72x86q"; depends=[Rcpp]; }; +Demerelate = derive { name="Demerelate"; version="0.8-1"; sha256="1qngwlzzpd2cmij5ldrmhcn12s9yxd0rargc5vzvkrwcqpkgylkn"; depends=[Formula fts mlogit sfsmisc vegan]; }; DendSer = derive { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; Density_T_HoldOut = derive { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; -DepthProc = derive { name="DepthProc"; version="1.0.3"; sha256="0xil3pl33224sizn1wy9x3lcngw017qjl22hfqzss9iy73cmxqnc"; depends=[ggplot2 Rcpp rrcov MASS np lattice sm geometry colorspace Rcpp RcppArmadillo]; }; -Deriv = derive { name="Deriv"; version="3.4"; sha256="03fawwlcc3lxp7y3labbhvhpzcp9yfxhbwq7bq8av1fvq92l4xi6"; depends=[]; }; -DescTools = derive { name="DescTools"; version="0.99.10"; sha256="0sfjx1bmp0864l55yj7f0zgf4s9kyi2y1p1dajaaxq8mnclqdfz2"; depends=[manipulate boot mvtnorm]; }; -DescribeDisplay = derive { name="DescribeDisplay"; version="0.2.4"; sha256="13npxq1314n4n08j6hbmij7qinl1xrxrgc5hxpbbpbd16d75c7iw"; depends=[proto reshape2 ggplot2 plyr scales GGally]; }; -DetMCD = derive { name="DetMCD"; version="0.0.2"; sha256="0z4zs0k8c8gsd2fry984p06l3p17fdyfky8fv9kvypk7xdg52whc"; depends=[robustbase Rcpp RcppEigen]; }; +DepthProc = derive { name="DepthProc"; version="1.0.3"; sha256="0xil3pl33224sizn1wy9x3lcngw017qjl22hfqzss9iy73cmxqnc"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm]; }; +Deriv = derive { name="Deriv"; version="3.5.4"; sha256="07a3pm79mv8wiapjdb2n6scgl3hc7pvz9inalm80aqlhpqrvp3hs"; depends=[]; }; +DescTools = derive { name="DescTools"; version="0.99.11"; sha256="0ccqgx6w7x55h5pd76hjyq79g0cdyw2m0w1h55kw4chqj0ibqizy"; depends=[boot foreign manipulate mvtnorm]; }; +DescribeDisplay = derive { name="DescribeDisplay"; version="0.2.4"; sha256="13npxq1314n4n08j6hbmij7qinl1xrxrgc5hxpbbpbd16d75c7iw"; depends=[GGally ggplot2 plyr proto reshape2 scales]; }; +DetMCD = derive { name="DetMCD"; version="0.0.2"; sha256="0z4zs0k8c8gsd2fry984p06l3p17fdyfky8fv9kvypk7xdg52whc"; depends=[Rcpp RcppEigen robustbase]; }; DetSel = derive { name="DetSel"; version="1.0.2"; sha256="0igkccclmjwzk7sl414zlhiykym0qwaz5p76wf4i7yrpjgk7mhl9"; depends=[ash]; }; -Devore7 = derive { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[MASS lattice]; }; -DiagTest3Grp = derive { name="DiagTest3Grp"; version="1.6"; sha256="04dxyyqv333rkjf2vlfpal59m7klhw6y7qilym6nw78qb1kqqys7"; depends=[car KernSmooth gplots]; }; -DiagrammeR = derive { name="DiagrammeR"; version="0.6"; sha256="021i1nvw5airli3392rwz9vq1zxwm2pdlw1y6wqw4968g8yc0k9f"; depends=[htmlwidgets rstudioapi]; }; -DiceDesign = derive { name="DiceDesign"; version="1.6"; sha256="1djq7clga3cvpgfycs3zjj106213yhfj9909sqrni70nj1nwdpj9"; depends=[]; }; -DiceEval = derive { name="DiceEval"; version="1.3"; sha256="1vp9zwd09cwl3c8066jr9d3w4yic70fvd40r7hsj2y8d0bhiwl82"; depends=[DiceKriging]; }; +Devore7 = derive { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; +DiagTest3Grp = derive { name="DiagTest3Grp"; version="1.6"; sha256="04dxyyqv333rkjf2vlfpal59m7klhw6y7qilym6nw78qb1kqqys7"; depends=[car gplots KernSmooth]; }; +DiagrammeR = derive { name="DiagrammeR"; version="0.7"; sha256="0cfxhxs4b5kknp1xsq2gg0dnyyv9vrj3bfswlvc5np7pkxankr2r"; depends=[htmlwidgets rstudioapi stringr]; }; +DiceDesign = derive { name="DiceDesign"; version="1.7"; sha256="05bmscy275077kmbmg75npnmw30kd5x5wmlizcfq771zixby3f7h"; depends=[]; }; +DiceEval = derive { name="DiceEval"; version="1.4"; sha256="06p3v161ig714k7z59iji64xhxw1a68kqhnlwhwpjpyrx7kn137b"; depends=[DiceKriging]; }; DiceKriging = derive { name="DiceKriging"; version="1.5.5"; sha256="035kbk633v4kfb44wiyb556sayl73c24fc1w09r3f33shqgidzjm"; depends=[]; }; -DiceOptim = derive { name="DiceOptim"; version="1.5"; sha256="0ajqn5p7sl9rdj35wy45vmmzxl2d97jgz5wdq6ghdzxq523vfkz3"; depends=[DiceKriging rgenoud MASS lhs mnormt]; }; -DiceView = derive { name="DiceView"; version="1.3-1"; sha256="0c7i1jy13d5bj822q1rp0d7gmmfjd00jaah34pnj8fzwyrq404z9"; depends=[DiceKriging DiceEval rgl]; }; -DiffCorr = derive { name="DiffCorr"; version="0.4.1"; sha256="1kxp9dbiww086rmvmjvfhbk7jl36dkj88qwii6zg57llf7l5l4hm"; depends=[igraph fdrtool]; }; +DiceOptim = derive { name="DiceOptim"; version="1.5"; sha256="0ajqn5p7sl9rdj35wy45vmmzxl2d97jgz5wdq6ghdzxq523vfkz3"; depends=[DiceKriging lhs MASS mnormt rgenoud]; }; +DiceView = derive { name="DiceView"; version="1.3-1"; sha256="0c7i1jy13d5bj822q1rp0d7gmmfjd00jaah34pnj8fzwyrq404z9"; depends=[DiceEval DiceKriging rgl]; }; +DiffCorr = derive { name="DiffCorr"; version="0.4.1"; sha256="1kxp9dbiww086rmvmjvfhbk7jl36dkj88qwii6zg57llf7l5l4hm"; depends=[fdrtool igraph multtest pcaMethods]; }; Digiroo2 = derive { name="Digiroo2"; version="0.6"; sha256="1b1ahhqz5largjadlk5n6nw2183c05k28mksb1wm26y0lps0vdgr"; depends=[maptools spatstat spdep]; }; -DirichletReg = derive { name="DirichletReg"; version="0.6-2"; sha256="08qfykyahyq54l9zm7g1yzmk2biz4xqq3qpxw0py4xazq719slk8"; depends=[Formula rgl maxLik]; }; +DirichletReg = derive { name="DirichletReg"; version="0.6-2"; sha256="08qfykyahyq54l9zm7g1yzmk2biz4xqq3qpxw0py4xazq719slk8"; depends=[Formula maxLik rgl]; }; Disake = derive { name="Disake"; version="1.5"; sha256="1fw45fmnir6h34jw8917mhyz6cgzbq4ywyyf51qxhm68wgzy9h17"; depends=[]; }; DiscML = derive { name="DiscML"; version="1.0.1"; sha256="0qkh0yak1kmzxxx0cqb47zgrj8v2s1d5danpibwwg43j138sb73l"; depends=[ape]; }; DiscreteInverseWeibull = derive { name="DiscreteInverseWeibull"; version="1.0.1"; sha256="0w0s2fixpcmcwids35xx91hll9rf9qbi7155sp90dxd3vr8c939v"; depends=[Rsolnp]; }; @@ -464,213 +481,217 @@ DiscreteLaplace = derive { name="DiscreteLaplace"; version="1.0"; sha256="1mwqvl DiscreteWeibull = derive { name="DiscreteWeibull"; version="1.0"; sha256="0v8za4arqarf20jrw38dzcjxdwfdpn0ss7p5yxbwhylnj7qz207w"; depends=[Rsolnp]; }; DiscriMiner = derive { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; }; Distance = derive { name="Distance"; version="0.9.3"; sha256="054z9pi8m8gjpax3s2hajvaik4yvfpy8qc4gmpl9bqncrk594pbv"; depends=[mrds]; }; -DistatisR = derive { name="DistatisR"; version="1.0"; sha256="1il00v26q68h5dd5c9lm2jblgn8hs6n0457r13mlw6r7pcj0158j"; depends=[prettyGraphs car]; }; +DistatisR = derive { name="DistatisR"; version="1.0"; sha256="1il00v26q68h5dd5c9lm2jblgn8hs6n0457r13mlw6r7pcj0158j"; depends=[car prettyGraphs]; }; DistributionUtils = derive { name="DistributionUtils"; version="0.5-1"; sha256="0gw531wfrjx1sxh17qh48dwbxnibgr0viga07vsp8nay7l02jap9"; depends=[RUnit]; }; DivE = derive { name="DivE"; version="1.0"; sha256="1ixkk8kd3ri78ykq178izib0vwppnbiwbpc1139rcl8f5giiwcdh"; depends=[deSolve FME rgeos sp]; }; DivMelt = derive { name="DivMelt"; version="1.0.3"; sha256="03vkz8d283l3zgqg7bh5dg3bss27pxv4qih7zwspwyjk81nw3xmr"; depends=[glmnet]; }; DiversitySampler = derive { name="DiversitySampler"; version="2.1"; sha256="1sfx7craykb82ncphvdj19mzc0kwzafhxlk9jcxkskygrlwsxfgg"; depends=[]; }; DnE = derive { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; -DoE_base = derive { name="DoE.base"; version="0.27"; sha256="0nh0hs4g8cl3h7p84ddag1qk4rdyw5wb13qnvw23r12q0f1p6y3l"; depends=[conf_design vcd combinat MASS]; }; -DoE_wrapper = derive { name="DoE.wrapper"; version="0.8-10"; sha256="12q3arfm76x9j8qnrmw07jh904qdqz59ga1zk8m3n17prr11vrgb"; depends=[FrF2 DoE_base rsm lhs DiceDesign AlgDesign]; }; +DoE_base = derive { name="DoE.base"; version="0.27"; sha256="0nh0hs4g8cl3h7p84ddag1qk4rdyw5wb13qnvw23r12q0f1p6y3l"; depends=[combinat conf_design MASS vcd]; }; +DoE_wrapper = derive { name="DoE.wrapper"; version="0.8-10"; sha256="12q3arfm76x9j8qnrmw07jh904qdqz59ga1zk8m3n17prr11vrgb"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; Dodge = derive { name="Dodge"; version="0.8"; sha256="1vnvqb2qvl6c13s48pyfn1g6yfhc60ql3vn7yh2zymxcsr1gxgcw"; depends=[]; }; -Dominance = derive { name="Dominance"; version="1.0.0"; sha256="0xcmslzfdcy826vcnlybhdyym5kqkrdqidq6jn10s4jic7jk8nl3"; depends=[igraph chron gdata]; }; +Dominance = derive { name="Dominance"; version="1.0.0"; sha256="0xcmslzfdcy826vcnlybhdyym5kqkrdqidq6jn10s4jic7jk8nl3"; depends=[chron gdata igraph]; }; DoseFinding = derive { name="DoseFinding"; version="0.9-12"; sha256="126xhq1ckry65g312cqvs9bdcl2ws34k6xnq7n9dcgi8jiizz46d"; depends=[lattice mvtnorm]; }; -DoubleCone = derive { name="DoubleCone"; version="1.0"; sha256="1pba9ypp0n3i2k3ji1x8j7h548pfam9z99hxylcjcxnnvc7xs2fw"; depends=[coneproj Matrix MASS]; }; +DoubleCone = derive { name="DoubleCone"; version="1.0"; sha256="1pba9ypp0n3i2k3ji1x8j7h548pfam9z99hxylcjcxnnvc7xs2fw"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive { name="DoubleExpSeq"; version="1.0"; sha256="0y797iqmxihrsp8lhy84p5hlyw3ckpklv0pgcqv4h39a6cpglbvd"; depends=[numDeriv]; }; DunnettTests = derive { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; DynClust = derive { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbzrbdmwk482xx27awwzv4kdrbchbzwhxqgm"; depends=[]; }; -DynNom = derive { name="DynNom"; version="1.0.1"; sha256="0gdy3kqj63khm74cdjhfmlnd06ard97h1598rkqwm7c3cng7b98c"; depends=[ggplot2 stargazer shiny compare]; }; +DynNom = derive { name="DynNom"; version="1.0.1"; sha256="0gdy3kqj63khm74cdjhfmlnd06ard97h1598rkqwm7c3cng7b98c"; depends=[compare ggplot2 shiny stargazer]; }; +DynTxRegime = derive { name="DynTxRegime"; version="2.1"; sha256="0dxf16zpj6cyx7afbvr4w4d76w4vshbvvkkqla68dbav0yvy7z7i"; depends=[modelObj]; }; DynamicDistribution = derive { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; EBEN = derive { name="EBEN"; version="1.1.1"; sha256="12nh96avcx4rrbmlr1q046i5ymrsnqvf0ra5ynh58akajfx7wy49"; depends=[]; }; -EBMAforecast = derive { name="EBMAforecast"; version="0.42"; sha256="161l6jxbzli2g5lcmlp74z320rsvsi80pxk1vc1ypa1hgwz3q80x"; depends=[separationplot ensembleBMA plyr Hmisc abind]; }; +EBMAforecast = derive { name="EBMAforecast"; version="0.42"; sha256="161l6jxbzli2g5lcmlp74z320rsvsi80pxk1vc1ypa1hgwz3q80x"; depends=[abind ensembleBMA Hmisc plyr separationplot]; }; EBS = derive { name="EBS"; version="3.0"; sha256="0nrqglbfr7wagd4xrk5jx0kficjgvk7wqwzqrbs589dkll24sn5b"; depends=[MASS]; }; EBglmnet = derive { name="EBglmnet"; version="3.6"; sha256="0qjwk5y9bghidha4i937nc0kl1jz4d8g2br6ij8651lf2byj9s1a"; depends=[]; }; EDISON = derive { name="EDISON"; version="1.1"; sha256="09xw4p4hwj8djq143wfdcqhr2mhwynj4ixj3ma7crhqidgal169p"; depends=[corpcor MASS]; }; EDR = derive { name="EDR"; version="0.6-5.1"; sha256="10ldygd1ymc4s9gqhhnpipggsiv4rwbgajvdk4mykkg3zmz7cbpm"; depends=[]; }; -EFDR = derive { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[Matrix foreach doParallel waveslim gstat tidyr dplyr sp]; }; -EGRET = derive { name="EGRET"; version="2.2.0"; sha256="1a3bvmshmxrnaijl9pklfia0ab94rzn22ywjh9gwn268qai52zjy"; depends=[dataRetrieval survival fields lubridate]; }; -EIAdata = derive { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[XML plyr xts zoo]; }; +EFDR = derive { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; +EGRET = derive { name="EGRET"; version="2.2.0"; sha256="1a3bvmshmxrnaijl9pklfia0ab94rzn22ywjh9gwn268qai52zjy"; depends=[dataRetrieval fields lubridate survival]; }; +EIAdata = derive { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[plyr XML xts zoo]; }; EILA = derive { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; EL = derive { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; }; -ELT = derive { name="ELT"; version="1.3"; sha256="0q6gc3npwxqq0hz1ardssv5wfxjnx93pi4l1viqsb0wp2kkfq3w6"; depends=[locfit lattice latticeExtra xlsx]; }; +ELT = derive { name="ELT"; version="1.3"; sha256="0q6gc3npwxqq0hz1ardssv5wfxjnx93pi4l1viqsb0wp2kkfq3w6"; depends=[lattice latticeExtra locfit xlsx]; }; ELYP = derive { name="ELYP"; version="0.7-2"; sha256="1aji3b9mixhzc6zv7qksacx328drpi0q7pgv3gi6iazira7lybdy"; depends=[survival]; }; -EMA = derive { name="EMA"; version="1.4.4"; sha256="1hqkan9k6ps4qckjrhsgxzham106fm38m5rgayz8i2ji3spvbfca"; depends=[survival xtable heatmap_plus GSA MASS FactoMineR cluster]; }; -EMC = derive { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[mvtnorm MASS]; }; -EMCC = derive { name="EMCC"; version="1.2"; sha256="1qff8yvw7iqdsrqkvwb7m14xh7gcnjcrf8gw00g4j6aq0h0cgk2z"; depends=[MASS mclust EMC]; }; +EMA = derive { name="EMA"; version="1.4.4"; sha256="1hqkan9k6ps4qckjrhsgxzham106fm38m5rgayz8i2ji3spvbfca"; depends=[affy AnnotationDbi biomaRt cluster FactoMineR gcrma GSA heatmap_plus MASS multtest siggenes survival xtable]; }; +EMC = derive { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; +EMCC = derive { name="EMCC"; version="1.2"; sha256="1qff8yvw7iqdsrqkvwb7m14xh7gcnjcrf8gw00g4j6aq0h0cgk2z"; depends=[EMC MASS mclust]; }; EMCluster = derive { name="EMCluster"; version="0.2-4"; sha256="0m5cl5mrg6q0ixfpjj1jwd7l5hcldc33lr7n6xgy7p9nlr52mimz"; depends=[MASS]; }; EMD = derive { name="EMD"; version="1.5.7"; sha256="0m2g7akg9h964d6qr1mj20h9pcb2fcmala3skhl0qpy8qz01w5ck"; depends=[fields locfit]; }; EMJumpDiffusion = derive { name="EMJumpDiffusion"; version="1.4.1"; sha256="10lw6717yq9vlywn5ilsl0d99fpx3zvc87vf7s0zxswhs81h7x1w"; depends=[]; }; EMMAgeo = derive { name="EMMAgeo"; version="0.9.1"; sha256="1rxbb666gh9g35m4jqa6y1zjp82s62ha6n92fkjvkk9wm25w6imr"; depends=[GPArotation limSolve shape]; }; EMMIXcontrasts = derive { name="EMMIXcontrasts"; version="1.0.0"; sha256="1q7bwf7kkpraj38lz5s1lhhghp7a5lzyj5b9x8024g6rh2qlwp7v"; depends=[]; }; -EMMIXskew = derive { name="EMMIXskew"; version="1.0.1"; sha256="16jkq0a9k1gf6gia8r65nwa2lh8zny4jmnq51g2rcqm44s5ylqbh"; depends=[lattice mvtnorm KernSmooth]; }; +EMMIXskew = derive { name="EMMIXskew"; version="1.0.1"; sha256="16jkq0a9k1gf6gia8r65nwa2lh8zny4jmnq51g2rcqm44s5ylqbh"; depends=[KernSmooth lattice mvtnorm]; }; EMMIXuskew = derive { name="EMMIXuskew"; version="0.11-6"; sha256="0japf0l0sj84jna7b5kirp6pgqa4c923ldwphb16ch2xxrgk5n5k"; depends=[MASS]; }; EMMREML = derive { name="EMMREML"; version="3.0"; sha256="0y37ydssn6m2q78v2aympfjr6z2hcn5y3dlgv4pj5g414fikb825"; depends=[Matrix]; }; EMP = derive { name="EMP"; version="2.0.1"; sha256="1zdy05jfhcgj6415pnm079v8xjg90n3akp1rwq65jbqdar38zj4y"; depends=[ROCR]; }; EMT = derive { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; }; EMVC = derive { name="EMVC"; version="0.1"; sha256="1725zrvq419yj0gd79h8bm56lv2mmk296wq3wapivcy6xn0j97jh"; depends=[]; }; ENMeval = derive { name="ENMeval"; version="0.1.1"; sha256="0g1h8dklv6rv73wwpx3vhbpnwply5lpq8x9jvl7r018x9gcvvb9m"; depends=[dismo raster rJava]; }; -ENiRG = derive { name="ENiRG"; version="0.1"; sha256="1cnl1mjl5y1rc6fv7c9jw2lkm898l3flfrj3idx9v1brjzyx5xlf"; depends=[ade4 raster R_utils sp spgrass6 gdata fgui miniGUI]; }; -ENmisc = derive { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc vcd RColorBrewer]; }; -EQL = derive { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[ttutils lattice]; }; +ENiRG = derive { name="ENiRG"; version="0.1"; sha256="1cnl1mjl5y1rc6fv7c9jw2lkm898l3flfrj3idx9v1brjzyx5xlf"; depends=[ade4 fgui gdata miniGUI R_utils raster sp spgrass6]; }; +ENmisc = derive { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; }; +EQL = derive { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[lattice ttutils]; }; ERP = derive { name="ERP"; version="1.0.1"; sha256="0wy1p7pp9dvc3krylskb627rmfqaj11qvia97m88x05ydqx1fwmr"; depends=[fdrtool mnormt]; }; ES = derive { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; -ESEA = derive { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph XML parmigene]; }; +ESEA = derive { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; }; ESG = derive { name="ESG"; version="0.1"; sha256="1jw6239asv6lwxrz5v0r5pzg6v500bqxg8361sh4jj67rsrc7g9m"; depends=[]; }; -ESGtoolkit = derive { name="ESGtoolkit"; version="0.1"; sha256="0r09arhsvamdyahini5yhgc43msdxwvn45l57xbfszahsnr3b3aq"; depends=[CDVine ggplot2 gridExtra reshape2 ycinterextra Rcpp Rcpp]; }; +ESGtoolkit = derive { name="ESGtoolkit"; version="0.1"; sha256="0r09arhsvamdyahini5yhgc43msdxwvn45l57xbfszahsnr3b3aq"; depends=[CDVine ggplot2 gridExtra Rcpp reshape2 ycinterextra]; }; ETAS = derive { name="ETAS"; version="0.0-1"; sha256="1p38ay3vnca8b8wszm66whxap8k58c004l1nlsk7zkynyia0im6c"; depends=[spatstat]; }; ETC = derive { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; -ETLUtils = derive { name="ETLUtils"; version="1.2"; sha256="0mlfq23v7nl6lslscknk9mdx4dxk8xyc5imnvzlhzhag0k50mqj2"; depends=[ff]; }; +ETLUtils = derive { name="ETLUtils"; version="1.3"; sha256="13xq9i9fr34kx1nym7nr02gynshzm4jjn4qzx6ydg044b7xl57jp"; depends=[bit ff]; }; EW = derive { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; -EWGoF = derive { name="EWGoF"; version="2.0"; sha256="07kpzaqfd7ihpmh2y5806mz5h64dcajia5v36pp9myl04fvpjapp"; depends=[Rcpp maxLik miscTools Rcpp]; }; -EasyABC = derive { name="EasyABC"; version="1.4"; sha256="0v3i7vlx2pnfkcqxka4g7ss8k8zphyx3vq5l0c1b433qp0fnjwf3"; depends=[abc pls mnormt MASS lhs]; }; -EasyHTMLReport = derive { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc markdown knitr ggplot2 scales xtable reshape2]; }; -EasyMARK = derive { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[MASS stringr rjags coda foreach doParallel random]; }; +EWGoF = derive { name="EWGoF"; version="2.1"; sha256="10p392n003sxn8l9sfnksi789k1w191rmkah6gxhji5f41gib5rh"; depends=[Rcpp]; }; +EasyABC = derive { name="EasyABC"; version="1.4"; sha256="0v3i7vlx2pnfkcqxka4g7ss8k8zphyx3vq5l0c1b433qp0fnjwf3"; depends=[abc lhs MASS mnormt pls]; }; +EasyHTMLReport = derive { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; +EasyMARK = derive { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; }; EasyStrata = derive { name="EasyStrata"; version="8.6"; sha256="0agmap9lmqbpfw8ijwxmjkcqjvc1ng0jsadkqpfz71a963nkqdcl"; depends=[Cairo plotrix]; }; EbayesThresh = derive { name="EbayesThresh"; version="1.3.2"; sha256="0n7cr917jrvmgwfqki7shvz9g9zpmbz9z8hm5ax7s8nnfzphrh4g"; depends=[]; }; Ecdat = derive { name="Ecdat"; version="0.2-7"; sha256="1z9mxx3mvn3vi5drxlzss7gs7vpzg7shinl529bx4jpxqpci90jy"; depends=[Ecfun]; }; -Ecfun = derive { name="Ecfun"; version="0.1-4"; sha256="0h3351pcahrn578lz1pcb7h3chmh0vmwbn9iqll98vibck847gai"; depends=[fda gdata RCurl XML tis jpeg MASS TeachingDemos stringi]; }; -EcoGenetics = derive { name="EcoGenetics"; version="1.1.0"; sha256="1a7dsjvkxaa37nfha07fgfas9zygsj9hrsllgf4b67rkqihrzz87"; depends=[adegenet ggplot2 gstudio hierfstat party raster rgdal rkt sp vegan]; }; -EcoHydRology = derive { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[operators topmodel DEoptim XML]; }; +Ecfun = derive { name="Ecfun"; version="0.1-4"; sha256="0h3351pcahrn578lz1pcb7h3chmh0vmwbn9iqll98vibck847gai"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; +EcoGenetics = derive { name="EcoGenetics"; version="1.2.0"; sha256="090vcbl8gl23335rga1126w6jqvql62kk9wxlfpjz4q11czgdclq"; depends=[adegenet ggplot2 hierfstat party raster rgdal rkt SoDA sp vegan]; }; +EcoHydRology = derive { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; }; EcoSimR = derive { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; EcoTroph = derive { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; EcoVirtual = derive { name="EcoVirtual"; version="0.1"; sha256="1c815kxljk4qhw0zs28w16ggasfyyyb6aggffx1m1q21s63h6c8h"; depends=[]; }; -EffectLiteR = derive { name="EffectLiteR"; version="0.3-3"; sha256="14v5samvkzpiy0gq6lq1vs5jqi084sq1if2sih0lk57qxz2647qh"; depends=[lavaan shiny foreign ggplot2 nnet survey lavaan_survey car]; }; +EditImputeCont = derive { name="EditImputeCont"; version="1.0.0"; sha256="1ghrax514hm8zymmaifwbls4wpic8qqzlf83p615k3d96p4lb304"; depends=[editrules Rcpp]; }; +EffectLiteR = derive { name="EffectLiteR"; version="0.3-3"; sha256="14v5samvkzpiy0gq6lq1vs5jqi084sq1if2sih0lk57qxz2647qh"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; EffectStars = derive { name="EffectStars"; version="1.5"; sha256="0j2jxxxpcsrsjzszz4mfk3892ain3qkswa1dkpsmfsk4zs06g0s4"; depends=[VGAM]; }; EffectTreat = derive { name="EffectTreat"; version="0.1-11"; sha256="1ps3jac3wc1v325maf4vx9jkirxbc1dfflr218xbzbgrj0zx9diz"; depends=[]; }; EffectsRelBaseline = derive { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; }; ElemStatLearn = derive { name="ElemStatLearn"; version="2012.04-0"; sha256="107x2mybadqgw03j3yq8ibq3ljs4fpx90chvsirpylqhv77wsabl"; depends=[]; }; EloRating = derive { name="EloRating"; version="0.43"; sha256="0gzpi4qjiqn0lzjwy37pkz6fg7dkp2hv2dfqgzfk32wsj0bswgab"; depends=[zoo]; }; -ElstonStewart = derive { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[kinship2 digest]; }; -EnQuireR = derive { name="EnQuireR"; version="0.10"; sha256="00kyclcr8da79lwpqa1vzkwn6pgf197h2biackwgphb0byhi8ssx"; depends=[FactoMineR SensoMineR Rcmdr MASS]; }; +ElstonStewart = derive { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; }; +EnQuireR = derive { name="EnQuireR"; version="0.10"; sha256="00kyclcr8da79lwpqa1vzkwn6pgf197h2biackwgphb0byhi8ssx"; depends=[FactoMineR MASS Rcmdr SensoMineR]; }; EngrExpt = derive { name="EngrExpt"; version="0.1-8"; sha256="0zclvckj2i7j4kfs58hcjcl722vl2y6dcnjz238cjfgwv279gqhp"; depends=[lattice]; }; -EnsembleBase = derive { name="EnsembleBase"; version="0.7.1"; sha256="1yc5afim7zprxvnk5r2m0wwrl15b8sifxnh00b1x7qnzyz4glfl2"; depends=[kknn gbm nnet e1071 randomForest doParallel foreach]; }; +EnsembleBase = derive { name="EnsembleBase"; version="0.7.1"; sha256="1yc5afim7zprxvnk5r2m0wwrl15b8sifxnh00b1x7qnzyz4glfl2"; depends=[doParallel e1071 foreach gbm kknn nnet randomForest]; }; EnsembleCV = derive { name="EnsembleCV"; version="0.7.1"; sha256="14mvwfjbhsrq9q7k5ph5sf9zriazgfby376v1zjm82r93y4samsf"; depends=[EnsembleBase]; }; EnsemblePCReg = derive { name="EnsemblePCReg"; version="0.6"; sha256="0amswx7x08hpfvsrkjyfz3adkfshl7d1knyvk9nrnrrpy65rilc3"; depends=[EnsembleBase]; }; EnsemblePenReg = derive { name="EnsemblePenReg"; version="0.6"; sha256="0fjp50jbnbhvyd7srvhy0ipysm192d8ikg9yra2vch33zrid2xbm"; depends=[EnsembleBase glmnet]; }; EntropyEstimation = derive { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; }; -EntropyExplorer = derive { name="EntropyExplorer"; version="1.0"; sha256="0daj7g209nk8lsalk51kf8kkr6lbnnlzf7xd2mmv1axm7y5rppl2"; depends=[]; }; +EntropyExplorer = derive { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; }; EnvNicheR = derive { name="EnvNicheR"; version="1.0"; sha256="1vw21gsdrx8gkf1rf8cnazv8l9ddcdmy2gckyf33fz7z2mbzgbkk"; depends=[]; }; -EnvStats = derive { name="EnvStats"; version="2.0.0"; sha256="1yjm1lm9hsq5gw6j8wqxxgc72p7c6prr5fx8vk9v6bb2hgf2bm8i"; depends=[MASS]; }; -EnviroStat = derive { name="EnviroStat"; version="0.4-0"; sha256="05sa63z6yzny2ncxpm5d3x0bx8snkn0x5pzpj2a7y6rwf6al5q4r"; depends=[MASS]; }; +EnvStats = derive { name="EnvStats"; version="2.0.1"; sha256="1z909p56dlhr00a5ir55sn5ny51h1wwi85as6arv3cn8c0zqyi74"; depends=[MASS]; }; +EnviroStat = derive { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; Epi = derive { name="Epi"; version="1.1.67"; sha256="12wbzv21whjnzlyqacgqmsgrjbkgj2495y9fwvav5mr21yfrjds3"; depends=[]; }; -EpiContactTrace = derive { name="EpiContactTrace"; version="0.8.8"; sha256="1vlr2xxnyq1i6ky39g8j3pf3m5775bmhii7vpskb0x7nnq161yzb"; depends=[Rcpp plyr R2HTML Rcpp]; }; -EpiDynamics = derive { name="EpiDynamics"; version="0.2"; sha256="1hqbfysvw2ln8z3as6lfcjlhkzccksngwh2vm25zsgy93gxw3mcc"; depends=[deSolve reshape2 ggplot2]; }; +EpiContactTrace = derive { name="EpiContactTrace"; version="0.8.8"; sha256="1vlr2xxnyq1i6ky39g8j3pf3m5775bmhii7vpskb0x7nnq161yzb"; depends=[plyr R2HTML Rcpp]; }; +EpiDynamics = derive { name="EpiDynamics"; version="0.2"; sha256="1hqbfysvw2ln8z3as6lfcjlhkzccksngwh2vm25zsgy93gxw3mcc"; depends=[deSolve ggplot2 reshape2]; }; EpiEstim = derive { name="EpiEstim"; version="1.1-2"; sha256="0r56iglhkrqvlsf3gbahd544h944fmbyn6jdc113rhjscf6dl605"; depends=[]; }; -EpiModel = derive { name="EpiModel"; version="1.1.4"; sha256="0gyj80xmhwa3a7k12m3lla9rkpfv1n307vjf8lka1bd1rvwipg2c"; depends=[deSolve network networkDynamic tergm doParallel ergm foreach RColorBrewer statnet_common]; }; +EpiModel = derive { name="EpiModel"; version="1.1.6"; sha256="0h3bbvk9qyhc0jml2jd21dahi1v00alar67jkzpwnavvmcgd8a3s"; depends=[deSolve doParallel ergm foreach network networkDynamic RColorBrewer statnet_common tergm]; }; Eplot = derive { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; }; EstCRM = derive { name="EstCRM"; version="1.3"; sha256="0fmnlh0pnprskq01iq3rfassyxq7fywiprvqw0xdlh8yxl3w2c9n"; depends=[Hmisc lattice]; }; EstSimPDMP = derive { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; }; EvCombR = derive { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; }; -EvalEst = derive { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[tfplot dse setRNG tframe]; }; +EvalEst = derive { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; }; Evapotranspiration = derive { name="Evapotranspiration"; version="1.5"; sha256="181s9wwil07740n79gz2ar9c1bjxy45v4fyxxkqjmdfly72la542"; depends=[zoo]; }; EvoRAG = derive { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; ExPosition = derive { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; }; -Exact = derive { name="Exact"; version="1.5"; sha256="14469wfm5g28ajlpcrqkmvhbqps8wvrh5lsi0rcrwbwybfv435vn"; depends=[]; }; +Exact = derive { name="Exact"; version="1.6"; sha256="0d5g5p98yrcd6v56iadsq448hl522shdqln2icmc3yfnya326as7"; depends=[]; }; ExactCIdiff = derive { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; -ExactPath = derive { name="ExactPath"; version="1.0"; sha256="0ngvalmgdswf73q0jr4psg0ihnb7qwkamm6h64l01k5rmgd5nm16"; depends=[ncvreg lars]; }; -ExceedanceTools = derive { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[splancs SpatialTools]; }; -ExomeDepth = derive { name="ExomeDepth"; version="1.1.4"; sha256="0a4y6y1zi1jn1g14f3wsl2pfbmp58afwkvrk7x7s1wp16vwgq0xb"; depends=[aod VGAM]; }; +ExactPath = derive { name="ExactPath"; version="1.0"; sha256="0ngvalmgdswf73q0jr4psg0ihnb7qwkamm6h64l01k5rmgd5nm16"; depends=[lars ncvreg]; }; +ExceedanceTools = derive { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; +ExomeDepth = derive { name="ExomeDepth"; version="1.1.5"; sha256="11ff89c080855wmvglapif7h3wmk6zrgfqcb0kshy4jglpwkz52x"; depends=[aod Biostrings GenomicAlignments GenomicRanges IRanges Rsamtools VGAM]; }; ExpDes = derive { name="ExpDes"; version="1.1.2"; sha256="0qfigbx06b3p04x5v7wban139mp8hg8x77x6nzwa4v6dr226qbkv"; depends=[]; }; ExpDes_pt = derive { name="ExpDes.pt"; version="1.1.2"; sha256="0khw2jhg2vxcivgr20ybvrsqhd8l8bir5xjmr4m44za9nhap43bz"; depends=[]; }; +ExtDist = derive { name="ExtDist"; version="0.6-3"; sha256="1vsxm578bb70wnz3mxm7y1n5vs0x5pby99hvxg5y5ksh2g2ascwa"; depends=[numDeriv optimx]; }; ExtremeBounds = derive { name="ExtremeBounds"; version="0.1.5"; sha256="1fsrp2dm1bdg5p0qsi2wa8qxrlq065jlazsxzixpjsni910mrb2k"; depends=[Formula]; }; FACTscorer = derive { name="FACTscorer"; version="0.1.0"; sha256="1gbfpm5szi6w8iyp7ywpqrmdq0wrv5axj29sj9gxjwmjfh5qgqjx"; depends=[]; }; -FADA = derive { name="FADA"; version="1.2"; sha256="1wpjqvhhgvirzcvl8r23iaw63wr8rys19mjy71mn24wg3zwnc2qz"; depends=[MASS elasticnet sparseLDA sda glmnet mnormt crossval]; }; +FADA = derive { name="FADA"; version="1.2"; sha256="1wpjqvhhgvirzcvl8r23iaw63wr8rys19mjy71mn24wg3zwnc2qz"; depends=[crossval elasticnet glmnet MASS mnormt sda sparseLDA]; }; FAMILY = derive { name="FAMILY"; version="0.1.18"; sha256="1f1s0p721sl27b9xp2wrdyx03kv1bdin4wfknmw1k0nnc94dcnp2"; depends=[pheatmap pROC]; }; -FAMT = derive { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[mnormt]; }; -FAOSTAT = derive { name="FAOSTAT"; version="1.9"; sha256="0gff60vlv35m5sjmz7glbdrd6ijy6n32a9xd26z2ix839qgywvqj"; depends=[RJSONIO plyr data_table MASS classInt ggplot2 labeling scales]; }; +FAMT = derive { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[impute mnormt]; }; +FAOSTAT = derive { name="FAOSTAT"; version="2.0"; sha256="06z8c964sf73ld4v9vybqjsdxskxp3ssyv0a3mpcs9la5y7n9jaz"; depends=[classInt data_table ggplot2 labeling MASS plyr RJSONIO scales]; }; FAdist = derive { name="FAdist"; version="2.1"; sha256="1y66ymg0k6kmyq4bclwwlqkp8brkq925ajpp0jqqn39f749c2kji"; depends=[]; }; -FAiR = derive { name="FAiR"; version="0.4-15"; sha256="18nj95fiy3j7kf4nzf692dxja3msnaaj5csg745bnajb48l606wz"; depends=[rgenoud gWidgetsRGtk2 rrcov Matrix]; }; +FAiR = derive { name="FAiR"; version="0.4-15"; sha256="18nj95fiy3j7kf4nzf692dxja3msnaaj5csg745bnajb48l606wz"; depends=[gWidgetsRGtk2 Matrix rgenoud rrcov]; }; FAmle = derive { name="FAmle"; version="1.3.3"; sha256="125m2hvl603avg9h9x5gfb7l9clpg7p0ir8fdypxyjiqggdr8hxa"; depends=[mvtnorm]; }; -FAwR = derive { name="FAwR"; version="1.1.0"; sha256="0566h9fgnnk8xankqkpvcshf8acr46lz84sf2pzlmasgvwh7xp19"; depends=[MASS lattice glpkAPI]; }; -FBFsearch = derive { name="FBFsearch"; version="1.0"; sha256="1nxfhll9gx9l6hzpcihlz880qxr0fyv5rjghk0xgp8xn4r5wxw11"; depends=[Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; +FAwR = derive { name="FAwR"; version="1.1.0"; sha256="0566h9fgnnk8xankqkpvcshf8acr46lz84sf2pzlmasgvwh7xp19"; depends=[glpkAPI lattice MASS]; }; +FBFsearch = derive { name="FBFsearch"; version="1.0"; sha256="1nxfhll9gx9l6hzpcihlz880qxr0fyv5rjghk0xgp8xn4r5wxw11"; depends=[Rcpp RcppArmadillo]; }; FBN = derive { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; }; FCMapper = derive { name="FCMapper"; version="1.0"; sha256="1wp5byx68067fnc0sl5zwvw2wllaqdbcy4g2gbzmlqwli0jz2dsk"; depends=[igraph]; }; FD = derive { name="FD"; version="1.0-12"; sha256="0xdpciq14i8rh7v6mw174hip64r7mrzhx7gwri3vp9y7a1380sbi"; depends=[ade4 ape geometry vegan]; }; -FDGcopulas = derive { name="FDGcopulas"; version="1.0"; sha256="1i86ns4hq74y0gnxfschshjlc6if3js0disjb4bwfizaclwbw3as"; depends=[Rcpp numDeriv randtoolbox Rcpp]; }; -FDRreg = derive { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda Rcpp mosaic Rcpp RcppArmadillo]; }; -FDboost = derive { name="FDboost"; version="0.0-8"; sha256="1xvyndbfd0df6ld7r6f6ajr7i6aql26n9j5ncn6rw5gm0f64s1lq"; depends=[mboost Matrix mgcv zoo MASS]; }; -FFD = derive { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[tkrplot R2HTML]; }; +FDGcopulas = derive { name="FDGcopulas"; version="1.0"; sha256="1i86ns4hq74y0gnxfschshjlc6if3js0disjb4bwfizaclwbw3as"; depends=[numDeriv randtoolbox Rcpp]; }; +FDRreg = derive { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; +FDboost = derive { name="FDboost"; version="0.0-8"; sha256="1xvyndbfd0df6ld7r6f6ajr7i6aql26n9j5ncn6rw5gm0f64s1lq"; depends=[MASS Matrix mboost mgcv zoo]; }; +FFD = derive { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; }; FField = derive { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; }; FGN = derive { name="FGN"; version="2.0-12"; sha256="0jxawb4wm1vcp0131mdnc0r24dw8sd29ih0fc2wh6ahy7mxzajqn"; depends=[akima ltsa]; }; FGSG = derive { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; -FHtest = derive { name="FHtest"; version="1.1"; sha256="0yqy3lvxjhk7biqfikxqlgs9zsy1vlld9pqxhgxmq04gbnjn2jfk"; depends=[interval MLEcens MASS KMsurv]; }; +FHtest = derive { name="FHtest"; version="1.2"; sha256="033p90zzlgx2galzp2iwwpg29hhhgscqmqkwpr69y2ck3nj3hz0v"; depends=[interval KMsurv MASS perm survival]; }; FI = derive { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; FITSio = derive { name="FITSio"; version="2.0-0"; sha256="1gf3i1q9g81gydag2gj1wsy6wi5jj2v4j3lyrnh1n2g4kxd6s3cp"; depends=[]; }; FKF = derive { name="FKF"; version="0.1.3"; sha256="01ibihca39zng4wrvhq8h28bmb2rnsjm21xy22b85kpn3mbnh7f1"; depends=[RUnit]; }; -FLIM = derive { name="FLIM"; version="1.2"; sha256="180az4zwmfcglmvismyacmh7ri4qg8jvhlisqpway0z5z6fsda6r"; depends=[zoo MASS]; }; +FLIM = derive { name="FLIM"; version="1.2"; sha256="180az4zwmfcglmvismyacmh7ri4qg8jvhlisqpway0z5z6fsda6r"; depends=[MASS zoo]; }; FLLat = derive { name="FLLat"; version="1.1"; sha256="1h2nfx7gb66hjdfkdm6im6n8c1fjdz9csg39pckb47c0khl3g9r0"; depends=[gplots]; }; FLR = derive { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; -FLSSS = derive { name="FLSSS"; version="3.1"; sha256="0cyrjq1b0s7x0dz3x2kvd7pr8v4lyw1324ik4rnbj9hv9mf1g0af"; depends=[Rcpp Rcpp]; }; -FME = derive { name="FME"; version="1.3.2"; sha256="1sjnsc8jbylb2bln5ic24s5bany3clzn44lqnymhsy81x88396ff"; depends=[deSolve rootSolve coda minpack_lm MASS]; }; +FLSSS = derive { name="FLSSS"; version="3.1"; sha256="0cyrjq1b0s7x0dz3x2kvd7pr8v4lyw1324ik4rnbj9hv9mf1g0af"; depends=[Rcpp]; }; +FME = derive { name="FME"; version="1.3.2"; sha256="1sjnsc8jbylb2bln5ic24s5bany3clzn44lqnymhsy81x88396ff"; depends=[coda deSolve MASS minpack_lm rootSolve]; }; FMStable = derive { name="FMStable"; version="0.1-2"; sha256="00viigpqfbqc4hyl9cwicbwqf2ksjak28qrqaa16jhbqz93j4fck"; depends=[]; }; FNN = derive { name="FNN"; version="1.1"; sha256="1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"; depends=[]; }; FPDclustering = derive { name="FPDclustering"; version="1.0"; sha256="078vvpn9lwza45l9k53m3yzhrkkyakm1ynm93x5yld4fgkrd3c33"; depends=[ThreeWay]; }; FRACTION = derive { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; }; FRAPO = derive { name="FRAPO"; version="0.3-8"; sha256="1wqayyai8pdm1vq6qvpd10qpd882cyjb0y0jl582fxd3a2ic7n14"; depends=[quadprog Rglpk timeSeries]; }; FRB = derive { name="FRB"; version="1.8"; sha256="13rp4gqldx84mngrdv5fa9xamkng7b3kgy30ywykcx46gmrym6ps"; depends=[corpcor rrcov]; }; -FRCC = derive { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[CCP MASS calibrate corpcor]; }; +FRCC = derive { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[calibrate CCP corpcor MASS]; }; FREQ = derive { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; -FRESA_CAD = derive { name="FRESA.CAD"; version="2.0.2"; sha256="1clnv18d6f747725ayksas3c2hng1bkb4zss44avfqh9q1y0z1iy"; depends=[Rcpp stringr miscTools Hmisc pROC Rcpp RcppArmadillo]; }; -FSelector = derive { name="FSelector"; version="0.20"; sha256="0gbnm48x5myhxxw8gz7ck9sl41nj5rxq4gwifqk3l4kiqphywlpi"; depends=[randomForest RWeka digest entropy]; }; -FTICRMS = derive { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[Matrix lattice]; }; -FWDselect = derive { name="FWDselect"; version="1.1"; sha256="1snamrzf0cqcm6sc5vr1b0scgy83jgr5hgsf2cjb3vi3j01hz9wd"; depends=[mgcv]; }; -FacPad = derive { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[Rlab MASS]; }; +FRESA_CAD = derive { name="FRESA.CAD"; version="2.0.2"; sha256="1clnv18d6f747725ayksas3c2hng1bkb4zss44avfqh9q1y0z1iy"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; +FSInteract = derive { name="FSInteract"; version="0.1.1"; sha256="0hlmz0sc4l9vmb4b2y3j95gh39m1jqrp9bvqsjjqdr0ly1lb7mvm"; depends=[Matrix Rcpp]; }; +FSelector = derive { name="FSelector"; version="0.20"; sha256="0gbnm48x5myhxxw8gz7ck9sl41nj5rxq4gwifqk3l4kiqphywlpi"; depends=[digest entropy randomForest RWeka]; }; +FTICRMS = derive { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; }; +FWDselect = derive { name="FWDselect"; version="2.0"; sha256="12hhb2vysg3c9fzh56xy3kwhwbgcn1yx4afhlpydnavp3aclrqrg"; depends=[cvTools mgcv]; }; +FacPad = derive { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; FactMixtAnalysis = derive { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; FactoClass = derive { name="FactoClass"; version="1.1.1"; sha256="0m5108g2nhdwqqmkn04l1x0kx32ikkhcz6gki0hpj9hlzrkya5w6"; depends=[ade4 xtable]; }; -FactoMineR = derive { name="FactoMineR"; version="1.29"; sha256="08pyp8z9xhy9f1mrcgdm13xqrca63xhpyarkq5fg7hv0ncs68s1h"; depends=[MASS ellipse lattice cluster scatterplot3d leaps flashClust]; }; -Factoshiny = derive { name="Factoshiny"; version="1.0"; sha256="0r8xnnmf2c0nhddgzwsfb86ajpirkr1788phhcjdap1w9k67nsy9"; depends=[FactoMineR shiny]; }; +FactoMineR = derive { name="FactoMineR"; version="1.30"; sha256="16zxrr1mqv56ipkhz2m8hrhipxynphy9d104zsqbwa0k7336z2b0"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; }; +Factoshiny = derive { name="Factoshiny"; version="1.0.2"; sha256="0wwsv0frn2d6a5l5lr9qzqglznaigc23bq7nhcbfy1wlvsmimnr3"; depends=[FactoMineR shiny]; }; Fahrmeir = derive { name="Fahrmeir"; version="2012.04-0"; sha256="1axx6r4g6gj1inih41i2az4y0d3jq9x1a6nyj8k7wp51z4z2nbmk"; depends=[]; }; Familias = derive { name="Familias"; version="2.2"; sha256="1nhjxn3f063gvi4jvwb8r4fap7f1zbcvb6qa30153yh31yprljls"; depends=[kinship2 paramlink]; }; -FastHCS = derive { name="FastHCS"; version="0.0.4"; sha256="11ddp1xy1cmnfbsvabyw0y2wdj4z1brqykji75y7wwchf71m2bps"; depends=[matrixStats rrcov Rcpp RcppEigen]; }; +FastHCS = derive { name="FastHCS"; version="0.0.5"; sha256="02ds9syqh8wpjrqibdv3kqxcyijclm572daqrj262b4b6211v46x"; depends=[matrixStats Rcpp RcppEigen robustbase]; }; FastImputation = derive { name="FastImputation"; version="1.2"; sha256="04bz623kcanxcl9z8zl6m7m47pk0szcjrjlgs5v1yl3jnq9m2n7g"; depends=[]; }; -FastKNN = derive { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[pdist assertthat]; }; +FastKNN = derive { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; FastPCS = derive { name="FastPCS"; version="0.1.2"; sha256="1lqb6g65vna2p7kc2y4kc5piy3280nlxl41bdkxkng2icmq14l58"; depends=[matrixStats Rcpp RcppEigen]; }; FastRCS = derive { name="FastRCS"; version="0.0.6"; sha256="0wjsh37jas8hcb9554ijvwj0k8dx96fjf88bzgy7nbim2byiy8p8"; depends=[matrixStats Rcpp RcppEigen]; }; FastRWeb = derive { name="FastRWeb"; version="1.1-0"; sha256="1hiabi7ibp69n5wi5x4kwznxhc2i7dxdrqf1fm6ppv7ix0wkjs07"; depends=[Cairo]; }; FatTailsR = derive { name="FatTailsR"; version="1.0-3"; sha256="0r9n18qlr70p6y4v1xv1lxi1lzm9qp29qy4w51chllqjn15kmv7l"; depends=[minpack_lm]; }; -FeaLect = derive { name="FeaLect"; version="1.8"; sha256="04vmf89kgn7hh9wzj6b654546d3jvz0zz675xhcd11gjzlsp8pgc"; depends=[lars rms]; }; -FeatureHashing = derive { name="FeatureHashing"; version="0.9"; sha256="1xbzmyah22kjrkd7ln1pjzwyn5w0zmhdhs9w1a3p8rjxrwmx6ssf"; depends=[Rcpp Matrix digest magrittr Rcpp digest BH]; }; -FedData = derive { name="FedData"; version="1.1.0"; sha256="0s5blfhlizl4lv22lxjhqrwrf10mxgy2cd5z4a9xg05k419q7alr"; depends=[sp rgdal raster RCurl rgeos igraph data_table devtools soilDB]; }; -FeedbackTS = derive { name="FeedbackTS"; version="1.3.1"; sha256="1zx64wbl5pzqn69bjhshd3nayxx4wlg7n1zwv7ilh68raxfxnbbx"; depends=[maps mapdata proj4 geoR sp]; }; -FieldSim = derive { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[rgl RColorBrewer]; }; +FeaLect = derive { name="FeaLect"; version="1.10"; sha256="1r7rgcadrqjhxn2g2w16axygsck82fprxg7l14ai11bn4b7h4pmb"; depends=[lars rms]; }; +FeatureHashing = derive { name="FeatureHashing"; version="0.9"; sha256="1xbzmyah22kjrkd7ln1pjzwyn5w0zmhdhs9w1a3p8rjxrwmx6ssf"; depends=[BH digest magrittr Matrix Rcpp]; }; +FedData = derive { name="FedData"; version="1.1.0"; sha256="0s5blfhlizl4lv22lxjhqrwrf10mxgy2cd5z4a9xg05k419q7alr"; depends=[data_table devtools igraph raster RCurl rgdal rgeos soilDB sp]; }; +FeedbackTS = derive { name="FeedbackTS"; version="1.3.1"; sha256="1zx64wbl5pzqn69bjhshd3nayxx4wlg7n1zwv7ilh68raxfxnbbx"; depends=[geoR mapdata maps proj4 sp]; }; +FieldSim = derive { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[RColorBrewer rgl]; }; FinAsym = derive { name="FinAsym"; version="1.0"; sha256="0v15ydz4sq9djwcdcfp90mk8l951rry7h91d7asgg53mddbxjj6f"; depends=[]; }; -FinCal = derive { name="FinCal"; version="0.6"; sha256="0slw5s7gilmv0j8iwhz27lss2gbrj2l8zqv7bqywr1yf0hw2nxn7"; depends=[ggplot2 reshape2 scales RCurl]; }; +FinCal = derive { name="FinCal"; version="0.6"; sha256="0slw5s7gilmv0j8iwhz27lss2gbrj2l8zqv7bqywr1yf0hw2nxn7"; depends=[ggplot2 RCurl reshape2 scales]; }; FinCovRegularization = derive { name="FinCovRegularization"; version="1.0.0"; sha256="0da7asm4mvbd4wvqll5gdvckb10ccfx7gy141xbxyaixdhgi6zl4"; depends=[quadprog]; }; FinTS = derive { name="FinTS"; version="0.4-5"; sha256="16m57h6rk4344aalfwaz7hsyis30c1dirsyx8ih661ihgqn1ai1r"; depends=[zoo]; }; -FinancialInstrument = derive { name="FinancialInstrument"; version="1.2.0"; sha256="0lx8gqmnapyizlg0qdcjy8xrkpbhj0f7nc95l86a6xy82hz62dzb"; depends=[quantmod zoo xts TTR]; }; +FinancialInstrument = derive { name="FinancialInstrument"; version="1.2.0"; sha256="0lx8gqmnapyizlg0qdcjy8xrkpbhj0f7nc95l86a6xy82hz62dzb"; depends=[quantmod TTR xts zoo]; }; FindAllRoots = derive { name="FindAllRoots"; version="1.0"; sha256="0n4wfm21qj5zn06jqnzxa0w9mfn18dqi6hk1jjqa56dxqw1k7vw0"; depends=[]; }; FindIt = derive { name="FindIt"; version="0.5"; sha256="0bj4al4b7na3w5y783nqyd2wc1pmwfmgf2p4q6n7vqbzqghy0a3q"; depends=[glmnet lars Matrix]; }; FindMinIC = derive { name="FindMinIC"; version="1.6"; sha256="0vlr56nw32msvz8bljrw82nzrnazncs6nz7zisidffm2v3najkar"; depends=[nlme sets]; }; -FisHiCal = derive { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph RcppArmadillo Rcpp RcppArmadillo]; }; -FisherEM = derive { name="FisherEM"; version="1.4"; sha256="1lhkyyk82i6alxyiqrvy5fx60f8vab0y62zmw5fjaq6h0vczqn3s"; depends=[MASS elasticnet]; }; -FitAR = derive { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[lattice leaps ltsa bestglm lattice leaps ltsa]; }; +FisHiCal = derive { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; }; +FisherEM = derive { name="FisherEM"; version="1.4"; sha256="1lhkyyk82i6alxyiqrvy5fx60f8vab0y62zmw5fjaq6h0vczqn3s"; depends=[elasticnet MASS]; }; +FitAR = derive { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; FitARMA = derive { name="FitARMA"; version="1.6"; sha256="1r9mqrqkm4wh3nd6v9wmpj23gw21i4p89p6z4c7639kn4f590ldk"; depends=[FitAR]; }; FlexParamCurve = derive { name="FlexParamCurve"; version="1.5-2"; sha256="1r8iacjnpbkpqwp58dz724g1cpnmll4b1mkxnsdj3h9iq1rbi7bq"; depends=[nlme]; }; FluOMatic = derive { name="FluOMatic"; version="1.0"; sha256="06hww6viynisnfiphvghv4iqf1gk2snb8aksignaw8pnlkixnsg7"; depends=[]; }; Flury = derive { name="Flury"; version="0.1-3"; sha256="105fv9azjkd8bsb9b8ba3gpy3pjnyyyp753qhrd11byp3d0bbxy0"; depends=[]; }; ForIT = derive { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; }; -ForImp = derive { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals sampling mvtnorm]; }; +ForImp = derive { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; ForeCA = derive { name="ForeCA"; version="0.2.2"; sha256="1iszhiqn0vg3l2c8cgshk8qir0dqml4jsl942hdsmjm6raxlb6n9"; depends=[ifultools MASS sapa]; }; FormalSeries = derive { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; Formula = derive { name="Formula"; version="1.2-1"; sha256="02in5325zzrqbhlygx6s0dinj6ymw845q70y56frqacv25ayzcax"; depends=[]; }; ForwardSearch = derive { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; FourScores = derive { name="FourScores"; version="1.0"; sha256="0d21mrl9bzsvhljv7ymiyck508smp66w9qivrb2rp0p803h9yibm"; depends=[]; }; -FrF2 = derive { name="FrF2"; version="1.7-1"; sha256="0i9hfx7n0g866imdsmalqzs8v95vx08cz97hi8311v1wc3pqsn1j"; depends=[DoE_base sfsmisc BsMD scatterplot3d igraph]; }; +FrF2 = derive { name="FrF2"; version="1.7-1"; sha256="0i9hfx7n0g866imdsmalqzs8v95vx08cz97hi8311v1wc3pqsn1j"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; }; Frames2 = derive { name="Frames2"; version="0.1.1"; sha256="004h3w5bfnbbxa8yczlcd8m0bc9xq91dg5ph6yql28ivibw24q1l"; depends=[sampling]; }; -FreeSortR = derive { name="FreeSortR"; version="1.1"; sha256="03z5wmr88gr6raa2cg7w4j6y5vgxr3g8b8axzhbd7jipswr5x1jf"; depends=[smacof vegan ellipse]; }; -FunChisq = derive { name="FunChisq"; version="2.0.2"; sha256="0j767iwf1hr7r532hdkrl9q2xiz997gd3rc7aca18fj743w6ras9"; depends=[Rcpp BH Rcpp RcppClassic]; }; -FunCluster = derive { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[Hmisc cluster]; }; +FreeSortR = derive { name="FreeSortR"; version="1.1"; sha256="03z5wmr88gr6raa2cg7w4j6y5vgxr3g8b8axzhbd7jipswr5x1jf"; depends=[ellipse smacof vegan]; }; +FunChisq = derive { name="FunChisq"; version="2.0.2"; sha256="0j767iwf1hr7r532hdkrl9q2xiz997gd3rc7aca18fj743w6ras9"; depends=[BH Rcpp RcppClassic]; }; +FunCluster = derive { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; }; FuncMap = derive { name="FuncMap"; version="1.0-3"; sha256="0bhx7y1n75r3jwf5mkx2i2bqfjgzxgsw58nwhfl48ldibgx7h1qs"; depends=[mvbutils]; }; -Funclustering = derive { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp Rcpp RcppEigen]; }; -FunctionalNetworks = derive { name="FunctionalNetworks"; version="1.0.0"; sha256="071hjgiccbrf1gxrh7niw2w1p6vgc77qvrildi59xhk53qcwzqdp"; depends=[]; }; +Funclustering = derive { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; }; +FunctionalNetworks = derive { name="FunctionalNetworks"; version="1.0.0"; sha256="071hjgiccbrf1gxrh7niw2w1p6vgc77qvrildi59xhk53qcwzqdp"; depends=[Biobase]; }; FusedPCA = derive { name="FusedPCA"; version="0.2"; sha256="0z4kvm6mn11fmc8w62aky2binjdcgrw4ij5vg65sb55da9s8d2kd"; depends=[genlasso]; }; FuzzyNumbers = derive { name="FuzzyNumbers"; version="0.4-1"; sha256="15i0chp43y8xfyzkjrbljmdvgjjx9w1l5ayhvavk9y85pwb147b8"; depends=[]; }; -FuzzyStatProb = derive { name="FuzzyStatProb"; version="2.0"; sha256="06s45w18airrrs5ppy325idv4yi6nf69nrs18gha55kb2xvjq3km"; depends=[MultinomialCI FuzzyNumbers DEoptim]; }; +FuzzyStatProb = derive { name="FuzzyStatProb"; version="2.0.1"; sha256="0cj6dqb5iy4gw7kkip9jvk9djf6dx20078kmb42br8sim1065j8m"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyToolkitUoN = derive { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; }; -G1DBN = derive { name="G1DBN"; version="3.1.1"; sha256="015rw3bpz32a8254janddgg1ip947qgcvmiwx5r3v7g8n854bwxn"; depends=[MASS igraph]; }; -G2Sd = derive { name="G2Sd"; version="2.1.3"; sha256="02j30mfrzi4q3a387i0cr4khj2hzf7jrlyj06qc8bwlhz0f4l35m"; depends=[shiny xlsx rJava xlsxjars reshape2 ggplot2]; }; +G1DBN = derive { name="G1DBN"; version="3.1.1"; sha256="015rw3bpz32a8254janddgg1ip947qgcvmiwx5r3v7g8n854bwxn"; depends=[igraph MASS]; }; +G2Sd = derive { name="G2Sd"; version="2.1.3"; sha256="02j30mfrzi4q3a387i0cr4khj2hzf7jrlyj06qc8bwlhz0f4l35m"; depends=[ggplot2 reshape2 rJava shiny xlsx xlsxjars]; }; GA = derive { name="GA"; version="2.2"; sha256="1pk80jwzvpmi61df0y331qvl8jkdizblg93s7gaspkbzy50wyfkp"; depends=[foreach iterators]; }; GA4Stratification = derive { name="GA4Stratification"; version="1.0"; sha256="0li23mrxjx72fir16j3q06fa32cicck4pfc30n0dy2lysf81m9gs"; depends=[]; }; GABi = derive { name="GABi"; version="0.1"; sha256="1zmiaqbd1jrpiz9hk16s8rggcpl3xyyhjkkdliymx2p42vy5b5mf"; depends=[hash]; }; @@ -681,144 +702,144 @@ GANPA = derive { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gac GANPAdata = derive { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; GAR = derive { name="GAR"; version="1.0"; sha256="1278rdln23pl5ay87nb6w15ywdh6ls8hx8k0nb48ab4ysjqf6r04"; depends=[httr jsonlite]; }; GAabbreviate = derive { name="GAabbreviate"; version="1.0"; sha256="0c9407i6dq7psw744fpkf190as99fssd9n9k0xbvwif10agm278l"; depends=[GA psych]; }; -GB2 = derive { name="GB2"; version="1.2"; sha256="1b5mkgn8c26bmi9ndzsqqp22vxqssy4nya1yysrl5wssjgicpdzs"; depends=[cubature hypergeo laeken numDeriv]; }; +GB2 = derive { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; GCAI_bias = derive { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; GCD = derive { name="GCD"; version="3.0.5"; sha256="1ami5xw5xx464pxr9y1z9bb3dvj46vx3wrbh19w4g7sk8yjvh5nl"; depends=[]; }; -GCPM = derive { name="GCPM"; version="1.1.1"; sha256="1wm7nmqj88j1pd2s1lvi6z1fizm3q3cl7vbzp88vbhpij4rnk4jl"; depends=[Rcpp RcppProgress Rcpp RcppProgress]; }; +GCPM = derive { name="GCPM"; version="1.1.1"; sha256="1wm7nmqj88j1pd2s1lvi6z1fizm3q3cl7vbzp88vbhpij4rnk4jl"; depends=[Rcpp RcppProgress]; }; GDAdata = derive { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive { name="GDAtools"; version="1.3"; sha256="1av29mllix0az4n85vxh1344j6jmy103hd78ibjwxalm620rp7ns"; depends=[FactoMineR]; }; GDELTtools = derive { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; GENEAread = derive { name="GENEAread"; version="1.1.1"; sha256="0c3d76yl8dqclk8zhhgrd6bv6b599vkpbyg3hjspb6npdw6zs6k8"; depends=[bitops]; }; -GENLIB = derive { name="GENLIB"; version="1.0.4"; sha256="1gl8qsgm9iy57rlajgc47lfxah52jsg7lpj131a6813kj0c639l7"; depends=[Rcpp kinship2 bootstrap Matrix lattice quadprog foreach doParallel Rcpp]; }; -GEOmap = derive { name="GEOmap"; version="2.3-5"; sha256="11sxlijfcswxmry6p9pb4g6prrql0qnqcqc21f72a0jp3k3670nc"; depends=[RPMG splancs fields]; }; -GESTr = derive { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[mclust gtools]; }; -GEVStableGarch = derive { name="GEVStableGarch"; version="1.0"; sha256="007s7lbfpp1bqnyg08rwarsmkxlx16p4is1k3736fmnri9sfp7z6"; depends=[fGarch fExtremes stabledist skewt Rsolnp]; }; +GENLIB = derive { name="GENLIB"; version="1.0.4"; sha256="1gl8qsgm9iy57rlajgc47lfxah52jsg7lpj131a6813kj0c639l7"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; +GEOmap = derive { name="GEOmap"; version="2.3-5"; sha256="11sxlijfcswxmry6p9pb4g6prrql0qnqcqc21f72a0jp3k3670nc"; depends=[fields RPMG splancs]; }; +GESTr = derive { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[gtools mclust]; }; +GEVStableGarch = derive { name="GEVStableGarch"; version="1.0"; sha256="007s7lbfpp1bqnyg08rwarsmkxlx16p4is1k3736fmnri9sfp7z6"; depends=[fExtremes fGarch Rsolnp skewt stabledist]; }; GEVcdn = derive { name="GEVcdn"; version="1.1.3"; sha256="13p6hkdybs8s2i363z2a65yijqarwj9swvy22ljk61shf2nzbk80"; depends=[VGAM]; }; -GExMap = derive { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[]; }; +GExMap = derive { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; }; GGEBiplotGUI = derive { name="GGEBiplotGUI"; version="1.0-8"; sha256="0bkagsm9mkcghc2q46cc86kjajzgjbq9588v0v2bp71qw8m97mbh"; depends=[rgl tkrplot]; }; -GGIR = derive { name="GGIR"; version="1.1-4"; sha256="1z1dwnx8lpj3xk7fdfm6sidbxpfgxjw9righ1kdnjw9g1nnkp29x"; depends=[]; }; -GGMselect = derive { name="GGMselect"; version="0.1-9"; sha256="18l98v6hv0sjhany275lsbdjwclx3abqfi924n9qlcnap1rvsfwz"; depends=[mvtnorm lars gtools]; }; +GGIR = derive { name="GGIR"; version="1.1-5"; sha256="0lanza1i7bqa0z745hbxkkyjhf6jy578jjva6nbisbbfsrbf7ydj"; depends=[]; }; +GGMselect = derive { name="GGMselect"; version="0.1-9"; sha256="18l98v6hv0sjhany275lsbdjwclx3abqfi924n9qlcnap1rvsfwz"; depends=[gtools lars mvtnorm]; }; GGally = derive { name="GGally"; version="0.5.0"; sha256="00ix8qafi71l7vhj6268f9srqbgr9iw1qk0202y59mhfrj6c6f5i"; depends=[ggplot2 gtable plyr reshape stringr]; }; GHQp = derive { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; GIGrvg = derive { name="GIGrvg"; version="0.3"; sha256="014srgh79g8y9fcj979v3md9qqx9i6b6fx6lw0r0qdrg4v6bvr76"; depends=[]; }; -GISTools = derive { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools sp RColorBrewer MASS rgeos]; }; +GISTools = derive { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; GLDEX = derive { name="GLDEX"; version="2.0.0.2"; sha256="16vy50jgk9b57h9f48097m17zrla6ksmi3wm4z2yadfg81sg8721"; depends=[cluster]; }; GLDreg = derive { name="GLDreg"; version="1.0.2"; sha256="179qjcsfgzcw39gmmwlz9h608cq865kz2lvh76dwgyyn519l3y8g"; depends=[GLDEX]; }; -GLSME = derive { name="GLSME"; version="1.0.2"; sha256="1zdqrji8x0f3wjl8bhpbnwdfklihv3ii20iz2y2gsm53yzw7dlwq"; depends=[mvtnorm corpcor]; }; -GMCM = derive { name="GMCM"; version="1.2.1"; sha256="1s45xmbx64h3sb10py8n444jpxcgsz4pc36cz3zinfq55amf8r6r"; depends=[Rcpp Rcpp RcppArmadillo]; }; +GLSME = derive { name="GLSME"; version="1.0.2"; sha256="1zdqrji8x0f3wjl8bhpbnwdfklihv3ii20iz2y2gsm53yzw7dlwq"; depends=[corpcor mvtnorm]; }; +GMCM = derive { name="GMCM"; version="1.2.1"; sha256="1s45xmbx64h3sb10py8n444jpxcgsz4pc36cz3zinfq55amf8r6r"; depends=[Rcpp RcppArmadillo]; }; GMD = derive { name="GMD"; version="0.3.3"; sha256="0hdya8ai210wxnkfra9bzyswk3gib5fm53fs61rh0nsmg3ysdga6"; depends=[gplots]; }; GMDH = derive { name="GMDH"; version="1.0"; sha256="194bx1gg0d50fq9002ga8lwx288csfk5vfr1qwkn886wiw97wl9n"; depends=[MASS]; }; -GMMBoost = derive { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[minqa magic]; }; -GNE = derive { name="GNE"; version="0.99-0"; sha256="1iwlh1mx8z24hgry78i5sqfrbqqp4946x1jxh6h7z1vxs7qfpq0v"; depends=[alabama nleqslv BB SQUAREM]; }; +GMMBoost = derive { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[magic minqa]; }; +GNE = derive { name="GNE"; version="0.99-0"; sha256="1iwlh1mx8z24hgry78i5sqfrbqqp4946x1jxh6h7z1vxs7qfpq0v"; depends=[alabama BB nleqslv SQUAREM]; }; GOGANPA = derive { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; -GOplot = derive { name="GOplot"; version="1.0"; sha256="15ix1lcbxf63bmxvjsy7y2nz55wf539xii8rb7lf788jplh47gb6"; depends=[ggplot2 ggdendro gridExtra RColorBrewer]; }; +GOplot = derive { name="GOplot"; version="1.0"; sha256="15ix1lcbxf63bmxvjsy7y2nz55wf539xii8rb7lf788jplh47gb6"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; GPArotation = derive { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqqwx47ara6glilzha87rnih0hs5fsz0jjqwv6wr1gw26rm"; depends=[]; }; -GPC = derive { name="GPC"; version="0.1"; sha256="1naqy5g6a0z65wssfic5s7cw9v0zjckk526nian3l98ci22sz0j7"; depends=[randtoolbox orthopolynom ks lars]; }; +GPC = derive { name="GPC"; version="0.1"; sha256="1naqy5g6a0z65wssfic5s7cw9v0zjckk526nian3l98ci22sz0j7"; depends=[ks lars orthopolynom randtoolbox]; }; GPCSIV = derive { name="GPCSIV"; version="0.1.0"; sha256="118l792mwd54xsi3g8afg3vc6wds8j6fyaz3mwmq04mlcyblym4l"; depends=[scatterplot3d sqldf]; }; -GPFDA = derive { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda_usc spam fda MASS]; }; +GPFDA = derive { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; }; GPLTR = derive { name="GPLTR"; version="1.1"; sha256="0yp4b3ddvcd6s7rjpbmszl3a0x8qq6s138jjkm135yvbgp1jk5jz"; depends=[rpart]; }; -GPareto = derive { name="GPareto"; version="1.0.0"; sha256="0mzrl4xs7f5rkx0m4lkqy1456dnsa232hprmbg3bpris1rla780b"; depends=[DiceKriging emoa Rcpp rgenoud pbivnorm pso randtoolbox KrigInv MASS Rcpp]; }; -GPfit = derive { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lhs lattice]; }; -GPlab = derive { name="GPlab"; version="0.1.0"; sha256="05lp5hm5f9pwqcw88x2206babb8yd0nw5smsd6j555qikx8nv88i"; depends=[Rcpp testthat MASS numDeriv Rcpp]; }; +GPareto = derive { name="GPareto"; version="1.0.0"; sha256="0mzrl4xs7f5rkx0m4lkqy1456dnsa232hprmbg3bpris1rla780b"; depends=[DiceKriging emoa KrigInv MASS pbivnorm pso randtoolbox Rcpp rgenoud]; }; +GPfit = derive { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; }; +GPlab = derive { name="GPlab"; version="0.1.0"; sha256="05lp5hm5f9pwqcw88x2206babb8yd0nw5smsd6j555qikx8nv88i"; depends=[MASS numDeriv Rcpp testthat]; }; GPseq = derive { name="GPseq"; version="0.5"; sha256="0k5xif44qk2ppvcyja16xshmfciq1h84l1w6d8dfkyryfajbc8ai"; depends=[]; }; -GPvam = derive { name="GPvam"; version="3.0-2"; sha256="160j0zwbcmvzvia1b5p5midf395xfv1frk2w6w3v2zpbn8h6pdz5"; depends=[Rcpp RcppArmadillo Matrix numDeriv Rcpp RcppArmadillo]; }; +GPvam = derive { name="GPvam"; version="3.0-2"; sha256="160j0zwbcmvzvia1b5p5midf395xfv1frk2w6w3v2zpbn8h6pdz5"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; GRTo = derive { name="GRTo"; version="1.2"; sha256="0x65g8a39vrb8m3hqajxi0ksmdavz0p6mlamqprkdn9p6ikf5c73"; depends=[bootstrap]; }; GRaF = derive { name="GRaF"; version="0.1-12"; sha256="1d7mr2z49v6ch4jbzh0dj2yjy2c5p51ws38xfz233sjz475snajr"; depends=[dismo]; }; GSA = derive { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; }; -GSAgm = derive { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[survival]; }; -GSE = derive { name="GSE"; version="3.1"; sha256="08xr7w6dsmgs3l8ayihadcvwy0xdzn78fllxa42sk7nfz6waadr3"; depends=[Rcpp MASS ggplot2 Rcpp RcppArmadillo]; }; -GSIF = derive { name="GSIF"; version="0.4-5"; sha256="041w4jvg7cwf90l03wl0jff24vf3lkzm3xqvl15117piix82lsf4"; depends=[sp RSAGA dismo rgdal raster aqp plotKML gstat plyr]; }; +GSAgm = derive { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; +GSE = derive { name="GSE"; version="3.1"; sha256="08xr7w6dsmgs3l8ayihadcvwy0xdzn78fllxa42sk7nfz6waadr3"; depends=[ggplot2 MASS Rcpp RcppArmadillo]; }; +GSIF = derive { name="GSIF"; version="0.4-6"; sha256="00m5djgc443678nwnmvgqv070g67pbvp1ci1x8gp7van8knjn5zq"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA sp]; }; GSM = derive { name="GSM"; version="1.3.1"; sha256="1ay6znw31qnhz5k6fa0aiccr2xxmnj7v3vzrvlk6y5v5smlvybd0"; depends=[gtools]; }; GUIDE = derive { name="GUIDE"; version="1.0.9"; sha256="1y0y6rwv1khd9bdaz5rl9nmxiangx0jckgihg16wb6hx6kf8kzc1"; depends=[rpanel tkrplot]; }; -GUILDS = derive { name="GUILDS"; version="1.2.1"; sha256="1z90qjgrx16yk956phbifcr7jd3w59h7akzz7p6g5ymrcjzih4qf"; depends=[Rcpp pracma subplex Rcpp]; }; -GUIProfiler = derive { name="GUIProfiler"; version="0.1.2"; sha256="1k56clda6xr649xfacnigi3c2s7ih1whchwcfqm7aa2d44vv3axz"; depends=[Nozzle_R1 MASS]; }; -GUTS = derive { name="GUTS"; version="0.9.1"; sha256="1rxgvhpy8ss2a5vaidv1ay3rvq3msv7hv3rcyykmdxj34nvz19bb"; depends=[Rcpp Rcpp BH]; }; -GUniFrac = derive { name="GUniFrac"; version="1.0"; sha256="0xr68yv3h2lwn7sxy8l5p9g1z3q9hihg9jamsyl70jj9b2ic80jn"; depends=[vegan ape]; }; -GWAF = derive { name="GWAF"; version="2.2"; sha256="11lk1dy24y1d0biihy2aypdvlx569lw1pfjs51m54rhgpwzkw6yd"; depends=[geepack coxme lme4]; }; +GUILDS = derive { name="GUILDS"; version="1.2.1"; sha256="1z90qjgrx16yk956phbifcr7jd3w59h7akzz7p6g5ymrcjzih4qf"; depends=[pracma Rcpp subplex]; }; +GUIProfiler = derive { name="GUIProfiler"; version="0.1.2"; sha256="1k56clda6xr649xfacnigi3c2s7ih1whchwcfqm7aa2d44vv3axz"; depends=[MASS Nozzle_R1]; }; +GUTS = derive { name="GUTS"; version="0.9.3"; sha256="0gyi5vlr1r35qn3gj788lh9xrb7dz03r57hxk11x8w72kv415pih"; depends=[Rcpp]; }; +GUniFrac = derive { name="GUniFrac"; version="1.0"; sha256="0xr68yv3h2lwn7sxy8l5p9g1z3q9hihg9jamsyl70jj9b2ic80jn"; depends=[ape vegan]; }; +GWAF = derive { name="GWAF"; version="2.2"; sha256="11lk1dy24y1d0biihy2aypdvlx569lw1pfjs51m54rhgpwzkw6yd"; depends=[coxme geepack lme4]; }; GWASExactHW = derive { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWG = derive { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; -GWLelast = derive { name="GWLelast"; version="1.1"; sha256="0c3mcvmvxvgibja6rb8j2mhmmjny825wgvi1dw0pz8pq1kg1q0ay"; depends=[doParallel geosphere sp spgwr glmnet foreach]; }; +GWLelast = derive { name="GWLelast"; version="1.1"; sha256="0c3mcvmvxvgibja6rb8j2mhmmjny825wgvi1dw0pz8pq1kg1q0ay"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWRM = derive { name="GWRM"; version="2.0"; sha256="1dfrwxr12dn6i39mv6i3j6k341f9rvd76skh0350jn6zx1cdkj9k"; depends=[SuppDists]; }; GWmodel = derive { name="GWmodel"; version="1.2-5"; sha256="14pp1hy4bqr6kg9fy9nchjm6kb3l85f58rl2449b7wv7vsk3yfvk"; depends=[maptools robustbase sp]; }; GWsignif = derive { name="GWsignif"; version="1.0"; sha256="04663qgy3xmijrx8m1s5ql7zj70mgsd58dl08ci742l1fzmfya5f"; depends=[]; }; GaDiFPT = derive { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; -GameTheory = derive { name="GameTheory"; version="1.0"; sha256="07v2qhnhczid814isnz4ywf624sds6jxxzayl8mzlnjv5qnk59z8"; depends=[lpSolveAPI combinat gtools ineq kappalab]; }; +GameTheory = derive { name="GameTheory"; version="1.0"; sha256="07v2qhnhczid814isnz4ywf624sds6jxxzayl8mzlnjv5qnk59z8"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; Gammareg = derive { name="Gammareg"; version="1.0"; sha256="1a5wibnbd8jg0v8577n1x9kc358qpd4jz7l8h7r541sdpprm6wb0"; depends=[]; }; -GenABEL = derive { name="GenABEL"; version="1.8-0"; sha256="0sd497qvik70iwv7wc8r50rhc5wx153pm8vif738wwqqp43chks3"; depends=[MASS GenABEL_data]; }; +GenABEL = derive { name="GenABEL"; version="1.8-0"; sha256="0sd497qvik70iwv7wc8r50rhc5wx153pm8vif738wwqqp43chks3"; depends=[GenABEL_data MASS]; }; GenABEL_data = derive { name="GenABEL.data"; version="1.0.0"; sha256="0p66fb0gynjx3mnfvnlz45cbn6xf49gwx9mfyxf584xfcggxaa1c"; depends=[]; }; GenBinomApps = derive { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; }; GenForImp = derive { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; }; GenKern = derive { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; }; -GenOrd = derive { name="GenOrd"; version="1.3.0"; sha256="07ll15fqcfvrbsd8psbvn9569hcmvghwadzb3h9qxh6pxnl9i5qd"; depends=[mvtnorm Matrix MASS]; }; +GenOrd = derive { name="GenOrd"; version="1.3.0"; sha256="07ll15fqcfvrbsd8psbvn9569hcmvghwadzb3h9qxh6pxnl9i5qd"; depends=[MASS Matrix mvtnorm]; }; GenSA = derive { name="GenSA"; version="1.1.5"; sha256="10fkb30p3ncswlq4f9jknfhrrsi4v3lkn2nlnpb2yhrqai538wij"; depends=[]; }; GenWin = derive { name="GenWin"; version="0.1"; sha256="0jm537i4jn3azdpvd50y9p0fssfx2ym2n36d3zgnfd32gqckz3s4"; depends=[pspline]; }; -GeneCycle = derive { name="GeneCycle"; version="1.1.2"; sha256="1ghdzdddbv6cnxqd08amy4c4s5jsxa637r828ygffk6z76xjr6b6"; depends=[MASS longitudinal fdrtool]; }; +GeneCycle = derive { name="GeneCycle"; version="1.1.2"; sha256="1ghdzdddbv6cnxqd08amy4c4s5jsxa637r828ygffk6z76xjr6b6"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; GeneFeST = derive { name="GeneFeST"; version="1.0.1"; sha256="0qgzjzhwf3nigfi09maywg9zkjxiicwiwiyqfcdk9gsvmp6mr4qn"; depends=[BASIX]; }; -GeneNet = derive { name="GeneNet"; version="1.2.12"; sha256="0z94ws95nvk7jx5fnrwb81925y14fash1g5pd1mmkkj8njq9kk4l"; depends=[corpcor longitudinal fdrtool igraph]; }; +GeneNet = derive { name="GeneNet"; version="1.2.12"; sha256="0z94ws95nvk7jx5fnrwb81925y14fash1g5pd1mmkkj8njq9kk4l"; depends=[corpcor fdrtool igraph longitudinal]; }; GeneReg = derive { name="GeneReg"; version="1.1.2"; sha256="081qc66mb17dwk886x9l2z4imklxnfs02yqql0ri9c47bpsga7wp"; depends=[igraph]; }; -Geneland = derive { name="Geneland"; version="4.0.5"; sha256="1v2m8v4sy95rajjw8m9bg4yal5ay7x1k5kqjxrivm45ad546ykwh"; depends=[RandomFields fields]; }; +Geneland = derive { name="Geneland"; version="4.0.5"; sha256="1v2m8v4sy95rajjw8m9bg4yal5ay7x1k5kqjxrivm45ad546ykwh"; depends=[fields RandomFields]; }; GeneralizedHyperbolic = derive { name="GeneralizedHyperbolic"; version="0.8-1"; sha256="0rx07z5npawvsah2lhhkryzpj19sg0sl0w410gmff985ksdn285m"; depends=[DistributionUtils RUnit]; }; GeneticSubsetter = derive { name="GeneticSubsetter"; version="0.5"; sha256="1j04qbnx6j39w16ks3v05hr99lsdsy8sp8af2cfg2mqwk4dy3kx2"; depends=[rrBLUP]; }; -GeneticTools = derive { name="GeneticTools"; version="0.3.1"; sha256="033dwg94ns4mz2ixgn180h6qd783gm492p9qs2nf8498cb4ycg9m"; depends=[gMWT Rcpp plotrix Rcpp RcppArmadillo]; }; -GeoDE = derive { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[Matrix MASS]; }; +GeneticTools = derive { name="GeneticTools"; version="0.3.1"; sha256="033dwg94ns4mz2ixgn180h6qd783gm492p9qs2nf8498cb4ycg9m"; depends=[gMWT plotrix Rcpp RcppArmadillo snpStats]; }; +GeoDE = derive { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; GeoGenetix = derive { name="GeoGenetix"; version="0.0.2"; sha256="0rrc8rdf6whpd830s2g9ybz82jcd0il9kkfrjh3xza3b86fasdvg"; depends=[RandomFields]; }; -GeoLight = derive { name="GeoLight"; version="1.03"; sha256="0l2p4rcmk33dj31xy06652mn05d2dhnny3xpzcf12kxyflpipdgr"; depends=[maps changepoint]; }; -GeoXp = derive { name="GeoXp"; version="1.6.2"; sha256="18wdmdwb79ipdjdii068dz9f55b5ldxn95g5q6jcxsqwp0wldvw8"; depends=[quantreg rgl spdep KernSmooth rgeos robustbase splancs]; }; +GeoLight = derive { name="GeoLight"; version="1.03"; sha256="0l2p4rcmk33dj31xy06652mn05d2dhnny3xpzcf12kxyflpipdgr"; depends=[changepoint maps]; }; +GeoXp = derive { name="GeoXp"; version="1.6.2"; sha256="18wdmdwb79ipdjdii068dz9f55b5ldxn95g5q6jcxsqwp0wldvw8"; depends=[KernSmooth quantreg rgeos rgl robustbase spdep splancs]; }; GetR = derive { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; -GetoptLong = derive { name="GetoptLong"; version="0.1.0"; sha256="1r86bffsj6s8d71wngspqvfv0gyrrpihf225b4v3c69c05n36qm1"; depends=[rjson GlobalOptions]; }; -GhcnDaily = derive { name="GhcnDaily"; version="1.5"; sha256="1gln1giid5n5b9mxidh90l8ahvcgx968zak2lxr2f9c32pnrpmnp"; depends=[R_utils R_oo R_methodsS3 abind ncdf]; }; +GetoptLong = derive { name="GetoptLong"; version="0.1.0"; sha256="1r86bffsj6s8d71wngspqvfv0gyrrpihf225b4v3c69c05n36qm1"; depends=[GlobalOptions rjson]; }; +GhcnDaily = derive { name="GhcnDaily"; version="1.5"; sha256="1gln1giid5n5b9mxidh90l8ahvcgx968zak2lxr2f9c32pnrpmnp"; depends=[abind ncdf R_methodsS3 R_oo R_utils]; }; GibbsACOV = derive { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; }; GillespieSSA = derive { name="GillespieSSA"; version="0.5-4"; sha256="0bs16g8vm9yrv74g94lj8fdfmf1rjj0f04lcnaya7gyak3jhk36q"; depends=[]; }; -Giza = derive { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[reshape lattice lattice]; }; +Giza = derive { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; }; GlobalDeviance = derive { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive { name="GlobalFit"; version="1.0"; sha256="0cx4jpr5yhjdqbvnswqjwx7542mnmk73dy99klwg8bsz0c36ii5k"; depends=[sybil]; }; GlobalOptions = derive { name="GlobalOptions"; version="0.0.6"; sha256="0g10zf3hn4ns7faffqzc9xbscz9p84vcqhlg4jp9jl063ma2pvqm"; depends=[]; }; -Gmisc = derive { name="Gmisc"; version="1.1"; sha256="1dcnnsjxap50zfx984rxgksjcvqgbb9zxxd03186h4669slh1d0d"; depends=[Rcpp htmlTable lattice Hmisc forestplot abind knitr magrittr Rcpp]; }; +Gmisc = derive { name="Gmisc"; version="1.1"; sha256="1dcnnsjxap50zfx984rxgksjcvqgbb9zxxd03186h4669slh1d0d"; depends=[abind forestplot Hmisc htmlTable knitr lattice magrittr Rcpp]; }; GoFKernel = derive { name="GoFKernel"; version="2.0-5"; sha256="030gcj608nkalscjqs2ad73pwhk4gp5gl1lvm4mc9b39jhki0r70"; depends=[KernSmooth]; }; -GrammR = derive { name="GrammR"; version="1.0.1"; sha256="1dhq4srzxbdbym89dy4gh0c4jjfkljxdnriv4v0yh9g688my1gvn"; depends=[gWidgets RGtk2 gWidgetsRGtk2 MASS cluster rgl GUniFrac ape]; }; -GraphPCA = derive { name="GraphPCA"; version="1.0"; sha256="17ipcp7nh47lfs9jy1aybpz4r172zj5yyrdrgmd6wa7hax8yv8gg"; depends=[ggplot2 FactoMineR scatterplot3d scales]; }; +GrammR = derive { name="GrammR"; version="1.0.1"; sha256="1dhq4srzxbdbym89dy4gh0c4jjfkljxdnriv4v0yh9g688my1gvn"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; }; +GraphPCA = derive { name="GraphPCA"; version="1.0"; sha256="17ipcp7nh47lfs9jy1aybpz4r172zj5yyrdrgmd6wa7hax8yv8gg"; depends=[FactoMineR ggplot2 scales scatterplot3d]; }; GrapheR = derive { name="GrapheR"; version="1.9-84"; sha256="1wwks2a4vzhj1rcspizp1vadl6kvrqr8s4zd6pghj02nd266znk9"; depends=[]; }; GrassmannOptim = derive { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; }; -Grid2Polygons = derive { name="Grid2Polygons"; version="0.1-5"; sha256="18hgyx8a75allldsc2ih5i1p7ajkwj2x020cfd2hp18zrc4qyp5n"; depends=[sp rgeos]; }; +Grid2Polygons = derive { name="Grid2Polygons"; version="0.1-5"; sha256="18hgyx8a75allldsc2ih5i1p7ajkwj2x020cfd2hp18zrc4qyp5n"; depends=[rgeos sp]; }; GriegSmith = derive { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; }; GroupSeq = derive { name="GroupSeq"; version="1.3.2"; sha256="16n06jw7f97jhafgl9sfvd163v1walhlpmai1hmhiwjvv341sp13"; depends=[]; }; GuardianR = derive { name="GuardianR"; version="0.5"; sha256="0m5arxz4ih84zg8sf2wy2kg38adraa098gb52vwz93dzdm1dhslw"; depends=[RCurl RJSONIO]; }; Guerry = derive { name="Guerry"; version="1.6-1"; sha256="1hpp49w2kd1npsd709cwg125pw6mrqxfv2nn3lcs1mg2r49ki2bl"; depends=[]; }; -GxM = derive { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[Rcpp minqa nlme]; }; -HAC = derive { name="HAC"; version="1.0-2"; sha256="0f4him7qpam4s0xxm49xqx0g3nrj87rszm52l376xi63z7r02wbv"; depends=[copula]; }; -HAP_ROR = derive { name="HAP.ROR"; version="1.0"; sha256="1id9amz1cc2l2vnpp0ikbhf8ghbgzqd1b9dfivnyglg7996c3gbg"; depends=[hash ape]; }; +GxM = derive { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; }; +HAC = derive { name="HAC"; version="1.0-3"; sha256="084i123fj5vnhn08fa1qzbk93khsi3r60s52d6pqkqvzbxc572jr"; depends=[copula numDeriv]; }; +HAP_ROR = derive { name="HAP.ROR"; version="1.0"; sha256="1id9amz1cc2l2vnpp0ikbhf8ghbgzqd1b9dfivnyglg7996c3gbg"; depends=[ape hash]; }; HAPim = derive { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; -HBSTM = derive { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[MASS fBasics maps]; }; -HDMD = derive { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[psych MASS]; }; -HDPenReg = derive { name="HDPenReg"; version="0.91"; sha256="0q63pm39ivka64f7rhad6bv0yr1b2b3241ln8gqfnal25qw31w82"; depends=[rtkpp rtkpp]; }; +HBSTM = derive { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; }; +HDMD = derive { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; +HDPenReg = derive { name="HDPenReg"; version="0.91"; sha256="0q63pm39ivka64f7rhad6bv0yr1b2b3241ln8gqfnal25qw31w82"; depends=[rtkpp]; }; HDclassif = derive { name="HDclassif"; version="1.2.3"; sha256="1ss30cjq352cr3v5blpdywycfv2ik200mvj54y8qihc811mash6h"; depends=[MASS]; }; HDtweedie = derive { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; HEAT = derive { name="HEAT"; version="1.2"; sha256="1qifqd06ifl0f5l44mkxapnkwhpm0b82yq6dhfw4f8yhb27wd0z2"; depends=[]; }; HGNChelper = derive { name="HGNChelper"; version="0.3.1"; sha256="0vidw7gdvr0i4l175ic5ya8q2x2jj0v2vc7fagzrp2mcy7fn1y6a"; depends=[]; }; -HH = derive { name="HH"; version="3.1-15"; sha256="030yfg1vx4ns0v2623axi1n6jdfi520fsjvln196gjw7dzdsm1gh"; depends=[lattice latticeExtra multcomp gridExtra reshape2 leaps vcd colorspace RColorBrewer Rcmdr shiny]; }; +HH = derive { name="HH"; version="3.1-19"; sha256="0hm8fk0wqfhkrjm3ycpxd4i8wwm9hi8ihy45a3wayp0p6lqv4rpp"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; HHG = derive { name="HHG"; version="1.4"; sha256="048jbwhrbgp1pv2j6sw234ykdn7bgpa49slwh3p5547nl2cwjysg"; depends=[]; }; HI = derive { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; }; HIV_LifeTables = derive { name="HIV.LifeTables"; version="0.1"; sha256="0qa5n9w5d5l1kr4827a34581q380xmpyzmmhhl300z1jwr0j94df"; depends=[]; }; HIest = derive { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; }; HK80 = derive { name="HK80"; version="0.0.1"; sha256="1qhknrqpspxrdxzf5kakans94db58bbhgpblvpwcyw4jrjmm0ng7"; depends=[]; }; -HLMdiag = derive { name="HLMdiag"; version="0.2.5"; sha256="1yim9m5q1m112aj7zhsw345l32bdj7lbw2mqpcxhjzv1lcknm5lq"; depends=[lme4 ggplot2 plyr reshape2 MASS Matrix Rcpp Rcpp RcppArmadillo]; }; -HLSM = derive { name="HLSM"; version="0.4"; sha256="115215fiaib6ndvzb3gn80l636ddxp0dxrnph8pnh16b3b6q2jnk"; depends=[MASS coda]; }; +HLMdiag = derive { name="HLMdiag"; version="0.2.5"; sha256="1yim9m5q1m112aj7zhsw345l32bdj7lbw2mqpcxhjzv1lcknm5lq"; depends=[ggplot2 lme4 MASS Matrix plyr Rcpp RcppArmadillo reshape2]; }; +HLSM = derive { name="HLSM"; version="0.4"; sha256="115215fiaib6ndvzb3gn80l636ddxp0dxrnph8pnh16b3b6q2jnk"; depends=[coda MASS]; }; HMM = derive { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; }; HMMCont = derive { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; }; HMMpa = derive { name="HMMpa"; version="1.0"; sha256="14r2axg42by49qm6avgv7g3xnc29bxlrni5fhc5vdz0wygkcrqhn"; depends=[]; }; -HMP = derive { name="HMP"; version="1.3.1"; sha256="1r39mq8j071khza37ck7w4kvk1di71hhn5m4wnx9dak7nlcq2nwx"; depends=[MCMCpack dirmult]; }; +HMP = derive { name="HMP"; version="1.3.1"; sha256="1r39mq8j071khza37ck7w4kvk1di71hhn5m4wnx9dak7nlcq2nwx"; depends=[dirmult MCMCpack]; }; HMPTrees = derive { name="HMPTrees"; version="1.2"; sha256="0agp8w7rzr1byj01di89r3qy1vb9inb2zgys78mg8jnk7axi925l"; depends=[ape]; }; HMR = derive { name="HMR"; version="0.4.1"; sha256="1acaph5q6vgi4c7liv7xsc3crhp23nib5q44aszxhramky0gvaqr"; depends=[]; }; -HPbayes = derive { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[MASS mvtnorm corpcor numDeriv boot]; }; +HPbayes = derive { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; HSAUR = derive { name="HSAUR"; version="1.3-6"; sha256="1872diskd9yz76x0z6yjg6dn1dxh479ybnja8vcly9fr8jb0kqqj"; depends=[]; }; HSAUR2 = derive { name="HSAUR2"; version="1.1-13"; sha256="13b14m2cknicahvprkn3kmjk1sir7a10vkaq63niinfirw603fa9"; depends=[]; }; HSAUR3 = derive { name="HSAUR3"; version="1.0-4"; sha256="1m2nqvm0ma5rmwwn27nzzyjzq8c0awsrrjjrnyaj50bcnmg0x0k6"; depends=[]; }; -HSROC = derive { name="HSROC"; version="2.1.8"; sha256="056g6iygrddmpmg5nnilqrlw2xavmcc9q07z942vc2nivw06h346"; depends=[lattice coda MASS MCMCpack]; }; +HSROC = derive { name="HSROC"; version="2.1.8"; sha256="056g6iygrddmpmg5nnilqrlw2xavmcc9q07z942vc2nivw06h346"; depends=[coda lattice MASS MCMCpack]; }; HSSVD = derive { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; }; HTMLUtils = derive { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; }; -HTSCluster = derive { name="HTSCluster"; version="2.0.4"; sha256="1kvq118hqxc81n88g4bq10lh84dydrqqhzig246wf3f97ajvq7y0"; depends=[capushe poisson_glm_mix plotrix]; }; -HUM = derive { name="HUM"; version="1.0"; sha256="1bq74l88jvscmq9ihv5wn06w2wng073ybvqb2bdx2dmiqlpv6jw2"; depends=[gtools Rcpp rgl Rcpp]; }; +HTSCluster = derive { name="HTSCluster"; version="2.0.4"; sha256="1kvq118hqxc81n88g4bq10lh84dydrqqhzig246wf3f97ajvq7y0"; depends=[capushe edgeR plotrix poisson_glm_mix]; }; +HUM = derive { name="HUM"; version="1.0"; sha256="1bq74l88jvscmq9ihv5wn06w2wng073ybvqb2bdx2dmiqlpv6jw2"; depends=[gtools Rcpp rgl]; }; HW_pval = derive { name="HW.pval"; version="1.0"; sha256="14nmyqw2d9cmn64789yc54fmiqanh6n1dizp7vj94h7b0jwq63yy"; depends=[]; }; HWEBayes = derive { name="HWEBayes"; version="1.4"; sha256="1rbffx6pn031a278ps9aqxcaq8yi73s5kf60za143ysbfxv9dphw"; depends=[MCMCpack mvtnorm]; }; HWEintrinsic = derive { name="HWEintrinsic"; version="1.2.1"; sha256="1sg5lrc6kl5rr6f5awp100qpd1679745kixasiddiggzd8fhgb7q"; depends=[]; }; @@ -826,40 +847,41 @@ HWxtest = derive { name="HWxtest"; version="1.0.5"; sha256="01pvi87g5sfglbdv38ik HadoopStreaming = derive { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; HandTill2001 = derive { name="HandTill2001"; version="0.2-9"; sha256="1j4ivxarm3k9sj05824lv6b03apyabpciv4mp253vv0yzjcp2bzf"; depends=[]; }; Hankel = derive { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; -HapEstXXR = derive { name="HapEstXXR"; version="0.1-7"; sha256="1jarb0465yymb08r8dr0mn6qlwbf0y0c4ipvxvcfwlvqalbp2kd6"; depends=[survival]; }; -Haplin = derive { name="Haplin"; version="5.3"; sha256="1gfg9dhgw42yjd1i8knnjvc2y2fbdc2ypa396g48hmsnislqffsd"; depends=[MASS mgcv GenABEL DatABEL filehash]; }; +HapEstXXR = derive { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; }; +Haplin = derive { name="Haplin"; version="5.5"; sha256="12wkj5x1s920xs0xzhxk0dswmwan7x20fw5sj6cx29n013h1gkam"; depends=[DatABEL GenABEL MASS mgcv snow SuppDists]; }; HaploSim = derive { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; HardyWeinberg = derive { name="HardyWeinberg"; version="1.5.5"; sha256="1kz12301bi2880i9ds7wvc6yb5hvrs3fr5689fm1yygkqfq8zc56"; depends=[mice]; }; HarmonicRegression = derive { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; -HelpersMG = derive { name="HelpersMG"; version="1.0"; sha256="11bjzkbdrysnryxriqk3wj8npk42i8rpc5b0c07q1zvk39png3lk"; depends=[coda]; }; -HiClimR = derive { name="HiClimR"; version="1.2.0"; sha256="10ick0311nc4zcqswlk3lhi9k5bv96nicqxqcq706cmlfk0qd0c7"; depends=[]; }; +HelpersMG = derive { name="HelpersMG"; version="1.1"; sha256="0pk8bcad9dnza803cq1428qlgb74vzq0vzx2q6f2j2hwmfpn13dx"; depends=[coda]; }; +HiClimR = derive { name="HiClimR"; version="1.2.1"; sha256="12qq3w20xzw2ih15hw5pzn0h58wv8rczhb4zxcdzc7zbg6i8qas4"; depends=[]; }; HiCseg = derive { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive { name="HiDimDA"; version="0.2-3"; sha256="0pk7hf8cnwv22p5cbpsh5wd94i1an87ddv80qycgypx4wi0v57hh"; depends=[]; }; -HiDimMaxStable = derive { name="HiDimMaxStable"; version="0.1.1"; sha256="0gscdjm48yyf8h3bn6xjbjlfc1hwbbh5j6v64c0z3d04h9q35c24"; depends=[copula mnormt partitions maxLik mnormpow VGAM]; }; +HiDimMaxStable = derive { name="HiDimMaxStable"; version="0.1.1"; sha256="0gscdjm48yyf8h3bn6xjbjlfc1hwbbh5j6v64c0z3d04h9q35c24"; depends=[copula maxLik mnormpow mnormt partitions VGAM]; }; HiLMM = derive { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; }; HiPLARM = derive { name="HiPLARM"; version="0.1"; sha256="0af68gfmc89nn1chmqay6ix0zygcp1hmylj02i7l6rx6vb06qw6w"; depends=[Matrix]; }; HiddenMarkov = derive { name="HiddenMarkov"; version="1.8-3"; sha256="1bgkzj9lmv0rbi5a77brw7w69k2w611jh3d851lfqnwx6gxgzkmc"; depends=[]; }; -HierO = derive { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[rneos RCurl bitops XML tcltk2]; }; -HighDimOut = derive { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[foreach DMwR plyr proxy FNN ggplot2]; }; -HistDAWass = derive { name="HistDAWass"; version="0.1.2"; sha256="16c4b9nfl6rbca7zifb2q3c5x60rmj32913hw1f79xs9ffdrnkwr"; depends=[FactoMineR class ggplot2 histogram]; }; +HierO = derive { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; }; +HighDimOut = derive { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; }; +HistDAWass = derive { name="HistDAWass"; version="0.1.2"; sha256="16c4b9nfl6rbca7zifb2q3c5x60rmj32913hw1f79xs9ffdrnkwr"; depends=[class FactoMineR ggplot2 histogram]; }; HistData = derive { name="HistData"; version="0.7-5"; sha256="17s64hfs7r77p0wjzpbgz9wp3gjzbly2d0v784f9m2bka8gj6xhr"; depends=[]; }; -HistogramTools = derive { name="HistogramTools"; version="0.3.1"; sha256="0cc3saly5q2kn1gr2mam7g901ddcipmlrn1m0amgrnbkakby2320"; depends=[Hmisc ash stringr]; }; -HiveR = derive { name="HiveR"; version="0.2-28"; sha256="1zz1cg7cf4yyv1bymqlyh50nzj5lgdv4clzm0l2vladcxzjvgk8c"; depends=[RColorBrewer plyr jpeg png rgl xtable tkrgl]; }; -Hmisc = derive { name="Hmisc"; version="3.16-0"; sha256="03d372bld4mikyrvmfw00ljiz6jf7szkmhrlgxs5vqk3v81kkp2f"; depends=[lattice survival Formula ggplot2 proto scales latticeExtra cluster rpart nnet acepack foreign gtable gridExtra]; }; +HistogramTools = derive { name="HistogramTools"; version="0.3.1"; sha256="0cc3saly5q2kn1gr2mam7g901ddcipmlrn1m0amgrnbkakby2320"; depends=[ash Hmisc stringr]; }; +HiveR = derive { name="HiveR"; version="0.2-28"; sha256="1zz1cg7cf4yyv1bymqlyh50nzj5lgdv4clzm0l2vladcxzjvgk8c"; depends=[jpeg plyr png RColorBrewer rgl tkrgl xtable]; }; +Hmisc = derive { name="Hmisc"; version="3.16-0"; sha256="03d372bld4mikyrvmfw00ljiz6jf7szkmhrlgxs5vqk3v81kkp2f"; depends=[acepack cluster foreign Formula ggplot2 gridExtra gtable lattice latticeExtra nnet proto rpart scales survival]; }; Holidays = derive { name="Holidays"; version="1.0-6"; sha256="031vddjf7s3pirv041y2mw694db63gjajlbczmmya8b1zp2f3vzk"; depends=[TimeWarp]; }; -HomoPolymer = derive { name="HomoPolymer"; version="1.0"; sha256="1bxc33dx9y9rr9aii4vn9d1j9v5pd4c0xayfdldz8d9m2010xr4a"; depends=[RGtk2 MenuCollection deSolve]; }; +HomoPolymer = derive { name="HomoPolymer"; version="1.0"; sha256="1bxc33dx9y9rr9aii4vn9d1j9v5pd4c0xayfdldz8d9m2010xr4a"; depends=[deSolve MenuCollection RGtk2]; }; HotDeckImputation = derive { name="HotDeckImputation"; version="1.0.0"; sha256="0zb02wcpq09lr7lr4wcgrbw9x7jcvhi34g7f4s6h88zz7xg9daw5"; depends=[Rglpk]; }; Hotelling = derive { name="Hotelling"; version="1.0-2"; sha256="0dzsqnn4c4av23qjnmacwc78i0xg355p1xwfmgipr04ivym0mqn0"; depends=[corpcor]; }; HyPhy = derive { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; }; HybridMC = derive { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; }; -HydroMe = derive { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[nlme minpack_lm]; }; +HydroMe = derive { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; }; HyperbolicDist = derive { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; IASD = derive { name="IASD"; version="1.0.7"; sha256="0a25sd82fxnmz3f4iaxhc69cdfb7xmh7wi79wv11sbw9cv2pl7kr"; depends=[]; }; IAT = derive { name="IAT"; version="0.2"; sha256="0byivq2298sjvpsz5z1w7r31h6z2jqpip40z8r2alygbgwwa48pd"; depends=[data_table ggplot2]; }; +IATscores = derive { name="IATscores"; version="0.1-2"; sha256="0grl5m4ccwaxvhg1bziy3vv5jffkvr24z268ws5m4ia20haif0dm"; depends=[dplyr nem qgraph reshape2 stringr]; }; IBDLabels = derive { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; IBDhaploRtools = derive { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; }; IBDsim = derive { name="IBDsim"; version="0.9-4"; sha256="0cpabz7mnhsrmjrgb23zs5anjrkhwc2005b2inl6p93l47i81fps"; depends=[paramlink]; }; -IBHM = derive { name="IBHM"; version="1.1-11"; sha256="1m0zxlybcak2v5c4spgaa39ngb2hryak4xd875jryk1dcnk9c702"; depends=[DEoptim cmaes Rcpp Rcpp]; }; +IBHM = derive { name="IBHM"; version="1.1-11"; sha256="1m0zxlybcak2v5c4spgaa39ngb2hryak4xd875jryk1dcnk9c702"; depends=[cmaes DEoptim Rcpp]; }; IBrokers = derive { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; }; IC2 = derive { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; ICAFF = derive { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; @@ -867,33 +889,33 @@ ICC = derive { name="ICC"; version="2.2.1"; sha256="1xl8x8ddbrk8ma57mybmmv9m096w ICE = derive { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; }; ICEbox = derive { name="ICEbox"; version="1.0"; sha256="1m3p0b93ksrcsp45m4gszcz01cwbfpj4ldar6l0q3c9lmyqsznx8"; depends=[sfsmisc]; }; ICEinfer = derive { name="ICEinfer"; version="1.0-1"; sha256="0gjgr1r33w6d5ra0njh15lj46lw6v751yl8iqrdf4a5pazs7w3lm"; depends=[lattice]; }; -ICGE = derive { name="ICGE"; version="0.3"; sha256="0xin7zml1nbygyi08hhg3wwr2jr1zcsvrlgia89zp4xanxlzgaqa"; depends=[MASS cluster]; }; +ICGE = derive { name="ICGE"; version="0.3"; sha256="0xin7zml1nbygyi08hhg3wwr2jr1zcsvrlgia89zp4xanxlzgaqa"; depends=[cluster MASS]; }; ICS = derive { name="ICS"; version="1.2-4"; sha256="1sfm9ymrrl72jzg8gsdw6v4q20i4s2w4syyr7brlvan136khpqyn"; depends=[mvtnorm survey]; }; -ICSNP = derive { name="ICSNP"; version="1.0-9"; sha256="0kisk7wk0zjsr47hgrmz5c8f2ljsl7x4549a1rwzsfkjz8901qka"; depends=[mvtnorm ICS]; }; +ICSNP = derive { name="ICSNP"; version="1.0-9"; sha256="0kisk7wk0zjsr47hgrmz5c8f2ljsl7x4549a1rwzsfkjz8901qka"; depends=[ICS mvtnorm]; }; ICsurv = derive { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; -IDPSurvival = derive { name="IDPSurvival"; version="1.0"; sha256="1v1w0i74b065b4qc302xbdl5df7qx9z8jmbc9cn46fqm1hh2b6d7"; depends=[Rsolnp gtools survival]; }; +IDPSurvival = derive { name="IDPSurvival"; version="1.0"; sha256="1v1w0i74b065b4qc302xbdl5df7qx9z8jmbc9cn46fqm1hh2b6d7"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; }; -IFP = derive { name="IFP"; version="0.1.2"; sha256="1sgjyxjfw3i1k02wy2lc7w9gnrs5g4wnp8kd78ks77f9j0sah2j8"; depends=[haplo_stats coda]; }; -IM = derive { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[png jpeg bmp]; }; +IFP = derive { name="IFP"; version="0.2.0"; sha256="02dm2qbnrs2yi6c64j90hdfimmdsld46k1wdkay8pfg62jy9rrwa"; depends=[coda haplo_stats]; }; +IM = derive { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[bmp jpeg png]; }; IMIS = derive { name="IMIS"; version="0.1"; sha256="09zb48vdj0i3vf8vxrs07xwb9ji27vp2fyvmg6jfq631licsryc2"; depends=[mvtnorm]; }; -INLABMA = derive { name="INLABMA"; version="0.1-6"; sha256="0rij3y89yyj25xz8r9n8cnq7rg9b7hf0n9nxxrrnm86w3n4r66in"; depends=[sp Matrix spdep]; }; -IPMpack = derive { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[Matrix MASS nlme]; }; +INLABMA = derive { name="INLABMA"; version="0.1-6"; sha256="0rij3y89yyj25xz8r9n8cnq7rg9b7hf0n9nxxrrnm86w3n4r66in"; depends=[Matrix sp spdep]; }; +IPMpack = derive { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; }; IPSUR = derive { name="IPSUR"; version="1.5"; sha256="0brh3dx7m1rilvr1ig6vbi7p13bfbblgvs8fc114f08d90fczwnq"; depends=[]; }; -IQCC = derive { name="IQCC"; version="0.6"; sha256="0gsnkdl4cfxzq6pm9g4i1g23mxg108j3is4x69id1xn2plf92m04"; depends=[qcc MASS micEcon miscTools]; }; -IRTShiny = derive { name="IRTShiny"; version="1.0"; sha256="1gjfqjqk7izl23b96g758dn6pb784ayb8yjjlryyrwga6mgsqdik"; depends=[shiny shinyAce beeswarm CTT ltm]; }; +IQCC = derive { name="IQCC"; version="0.6"; sha256="0gsnkdl4cfxzq6pm9g4i1g23mxg108j3is4x69id1xn2plf92m04"; depends=[MASS micEcon miscTools qcc]; }; +IRTShiny = derive { name="IRTShiny"; version="1.0"; sha256="1gjfqjqk7izl23b96g758dn6pb784ayb8yjjlryyrwga6mgsqdik"; depends=[beeswarm CTT ltm shiny shinyAce]; }; ISBF = derive { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; ISDA_R = derive { name="ISDA.R"; version="1.0"; sha256="0w6p2iy6s7fy8pw2cf4b5zhqcgjjwd5bkax1aqflaaj4ppmfx64v"; depends=[scatterplot3d]; }; ISLR = derive { name="ISLR"; version="1.0"; sha256="0gmhvsivhpq3x8a240lgcbv1qzdgf6wxms4svak1501clc87xc6x"; depends=[]; }; ISOcodes = derive { name="ISOcodes"; version="2015.04.04"; sha256="1mg7mifcqh0g0ra4f1skng6fyp2rhfv2xd9m7nyih39inzdjkcdf"; depends=[]; }; -ISOpureR = derive { name="ISOpureR"; version="1.0.8"; sha256="0jjamyj4rf078rfa2qqrn4i55025sc5968lq95yadbw0izxb51i8"; depends=[Rcpp Rcpp RcppEigen]; }; +ISOpureR = derive { name="ISOpureR"; version="1.0.8"; sha256="0jjamyj4rf078rfa2qqrn4i55025sc5968lq95yadbw0izxb51i8"; depends=[Rcpp RcppEigen]; }; ISOweek = derive { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; -ISwR = derive { name="ISwR"; version="2.0-6"; sha256="1ms4lm1skfqaq4mnm03kvjb7kaxdzv72s6i77zp7z17gzfa40c9h"; depends=[]; }; -IUPS = derive { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[R2jags Matching boot]; }; +ISwR = derive { name="ISwR"; version="2.0-7"; sha256="1rd1wrvl8wlc8ya5lndk74gnfvj9wp29z8617v3kbf32gqhby7ng"; depends=[]; }; +IUPS = derive { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; }; Iboot = derive { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; -IgorR = derive { name="IgorR"; version="0.7.1"; sha256="1ahj1ckzjffsskicdy2b70pzx5cn2r0s22yg1ajwiyy4ykwcg4pk"; depends=[bitops]; }; +IgorR = derive { name="IgorR"; version="0.8"; sha256="1khm7mbs497ybaw428ziwlxxygg1vcn5kx77w2cwm4mg8w95f4na"; depends=[bitops]; }; Imap = derive { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; ImpactIV = derive { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; -InPosition = derive { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[prettyGraphs ExPosition]; }; +InPosition = derive { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[ExPosition prettyGraphs]; }; IndependenceTests = derive { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; InfDim = derive { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; InferenceSMR = derive { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; @@ -903,100 +925,100 @@ Interact = derive { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p0 InteractiveIGraph = derive { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; }; Interatrix = derive { name="Interatrix"; version="1.0"; sha256="1lkkjckxc0fc8hg1livgzrgphqwcp53cib0r0vii5jp4zkcna595"; depends=[MASS tkrplot]; }; Interpol = derive { name="Interpol"; version="1.3.1"; sha256="1598lnnrcxihxysdljphqxig15fd8z7linw9byjmqypwcpk6r5jn"; depends=[]; }; -Interpol_T = derive { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[date chron]; }; -InvariantCausalPrediction = derive { name="InvariantCausalPrediction"; version="0.3-2"; sha256="09s6jwcb6wyi6p1nqxvyfvv4140fq6svfv7w681nk8g57xlgc1h1"; depends=[glmnet mboost jointDiag]; }; +Interpol_T = derive { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; }; +InvariantCausalPrediction = derive { name="InvariantCausalPrediction"; version="0.3-3"; sha256="00sxfgnzqikp92haqnqi4asq904dcsqqnxmz23lx7508qbfx3vhn"; depends=[glmnet mboost]; }; InventorymodelPackage = derive { name="InventorymodelPackage"; version="1.0.2"; sha256="1w35idsagl9v93ci3qmal3xbf11sy6h1k7xnv25c59ivfnpjpkva"; depends=[e1071]; }; -IsingFit = derive { name="IsingFit"; version="0.3.0"; sha256="0imgj3g6sankzmycjkzzz3bgai3jjycgsinhs5zy9k4vgqjg27d6"; depends=[qgraph Matrix glmnet]; }; -IsingSampler = derive { name="IsingSampler"; version="0.2"; sha256="16vwb5pcqjvvsk9wsgj10mzhgh72iz1q6n8nmkva6y1l7xv54c8w"; depends=[Rcpp plyr magrittr nnet Rcpp]; }; -Iso = derive { name="Iso"; version="0.0-15"; sha256="18ig772xxsbj1vhrv7b20hrglnnz742s1mjzhwx02bpjhica4a46"; depends=[]; }; +IsingFit = derive { name="IsingFit"; version="0.3.0"; sha256="0imgj3g6sankzmycjkzzz3bgai3jjycgsinhs5zy9k4vgqjg27d6"; depends=[glmnet Matrix qgraph]; }; +IsingSampler = derive { name="IsingSampler"; version="0.2"; sha256="16vwb5pcqjvvsk9wsgj10mzhgh72iz1q6n8nmkva6y1l7xv54c8w"; depends=[magrittr nnet plyr Rcpp]; }; +Iso = derive { name="Iso"; version="0.0-17"; sha256="0lljc99sdzdqj6d56qbsggibr6pkdwkh821bj70ianikyvmdc1y0"; depends=[]; }; IsoCI = derive { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; -IsoGene = derive { name="IsoGene"; version="1.0-23"; sha256="18sl1qki2dn4ldycpqazj23zcibs3zqwp355q24nwr802xx3y4a6"; depends=[Iso xtable ff]; }; +IsoGene = derive { name="IsoGene"; version="1.0-23"; sha256="18sl1qki2dn4ldycpqazj23zcibs3zqwp355q24nwr802xx3y4a6"; depends=[affy Biobase ff Iso xtable]; }; IsotopeR = derive { name="IsotopeR"; version="0.4.7"; sha256="18gwmh4nprj4z0ar1w8npj2ymxihw5ydwa33g25mimjk8y2cs0x5"; depends=[coda fgui runjags]; }; JADE = derive { name="JADE"; version="1.9-92"; sha256="0ki3jpz4npjikn3jjb7ppiyx0flhxx3p8aghjxlm3klhkm0k6ix4"; depends=[clue]; }; -JAGUAR = derive { name="JAGUAR"; version="2.0"; sha256="1c9pyg9jph95161g6zz0jlv5hlyvr9z960by7x3pv7plfkppjy7m"; depends=[Rcpp plyr lme4 doParallel Rcpp]; }; +JAGUAR = derive { name="JAGUAR"; version="2.0"; sha256="1c9pyg9jph95161g6zz0jlv5hlyvr9z960by7x3pv7plfkppjy7m"; depends=[doParallel lme4 plyr Rcpp]; }; JASPAR = derive { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; -JBTools = derive { name="JBTools"; version="0.7.2.6"; sha256="1wpkv8841kzpw2iqacp6k0y182lsvfl1ri54aq1hg4ypb51b8ibb"; depends=[foreach gplots colorspace plotrix]; }; +JBTools = derive { name="JBTools"; version="0.7.2.9"; sha256="0bynqn3daqgmi3l9asy34mfwyfjkn35k465dfqqi3xwx6cbzlg5k"; depends=[colorspace foreach gplots plotrix]; }; JGL = derive { name="JGL"; version="2.3"; sha256="1351iq547ln06nklrgx192dqlfnn03hkwj3hrliqzfbmsls098qc"; depends=[igraph]; }; -JGR = derive { name="JGR"; version="1.7-16"; sha256="0iv659mjsv7apzpzvmq23w514h6yq50hi70ym7jrv948qrzh64pg"; depends=[rJava JavaGD iplots]; }; +JGR = derive { name="JGR"; version="1.7-16"; sha256="0iv659mjsv7apzpzvmq23w514h6yq50hi70ym7jrv948qrzh64pg"; depends=[iplots JavaGD rJava]; }; JM = derive { name="JM"; version="1.3-0"; sha256="0yn33dvy9kp7xaxlqk11f86qaichdcxpmq04gpnbcs8w8cdjjz3m"; depends=[MASS nlme survival]; }; JMbayes = derive { name="JMbayes"; version="0.7-2"; sha256="087brgljj158my1xc0vmbjkh4hqr0509zf8j4fq1b9lj52z7rdl5"; depends=[MASS nlme survival]; }; JMdesign = derive { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; }; -JOP = derive { name="JOP"; version="3.6"; sha256="1kpb1dy2vm4jgzd3h0qgdw53nfp2qi74hgq5l5inxx4aayncclk7"; depends=[Rsolnp dglm]; }; +JOP = derive { name="JOP"; version="3.6"; sha256="1kpb1dy2vm4jgzd3h0qgdw53nfp2qi74hgq5l5inxx4aayncclk7"; depends=[dglm Rsolnp]; }; JPSurv = derive { name="JPSurv"; version="1.0.1"; sha256="11hfji0nyfmw1d7y2cijpp7ivlv5s9k8g771kmgwy14wflkyf7g2"; depends=[]; }; JavaGD = derive { name="JavaGD"; version="0.6-1"; sha256="13n6xzbbjgd0bpwv2xgm3dlscg87wh32q6fcq50kk6byp6yv05sc"; depends=[]; }; Jmisc = derive { name="Jmisc"; version="0.3.1"; sha256="1szn29dng54l2xmrm6pg3d5rmwdc1ks23vsnsmplnr5rx7yj002s"; depends=[]; }; JoSAE = derive { name="JoSAE"; version="0.2.2"; sha256="1ag4qg9cfcg8i2xz79bza2qlw3azw33h7k2ip5nlfkfpd33l9w05"; depends=[nlme]; }; Johnson = derive { name="Johnson"; version="1.4"; sha256="12ajcfz5mwxvimv8nq683a2x3590gz0gnyviviyzf5x066a4q0lj"; depends=[]; }; JohnsonDistribution = derive { name="JohnsonDistribution"; version="0.24"; sha256="00211pa2wn4bsfj6wfl9q9g123cp8iz3kxc17pw9q65j9an4sr0m"; depends=[]; }; -JointRegBC = derive { name="JointRegBC"; version="0.1.1"; sha256="0w7ygs3pvlqkkb2x20kv20kda3gz7cn6zgrkg30nhjxp318d76ab"; depends=[nlme MASS survival]; }; +JointRegBC = derive { name="JointRegBC"; version="0.1.1"; sha256="0w7ygs3pvlqkkb2x20kv20kda3gz7cn6zgrkg30nhjxp318d76ab"; depends=[MASS nlme survival]; }; Julia = derive { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; -KANT = derive { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[]; }; -KATforDCEMRI = derive { name="KATforDCEMRI"; version="0.740"; sha256="1k8fihd9m26k14rvc5d5x0d9xc3mh8d49hs64p55np1acqfhg2sy"; depends=[locfit R_matlab matlab]; }; +KANT = derive { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; +KATforDCEMRI = derive { name="KATforDCEMRI"; version="0.740"; sha256="1k8fihd9m26k14rvc5d5x0d9xc3mh8d49hs64p55np1acqfhg2sy"; depends=[locfit matlab R_matlab]; }; KFAS = derive { name="KFAS"; version="1.1.1"; sha256="16r86kcx5av11j1p0dad8qvcj4dszh3kvcy8zp7kaw247kjvr3pv"; depends=[]; }; KFKSDS = derive { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; KMDA = derive { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; KMsurv = derive { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; -KODAMA = derive { name="KODAMA"; version="0.0.1"; sha256="199l6y5b98ags5p7jf150v0i0kcdxlsr2q0rgdpz9ra1hw1cjsfb"; depends=[e1071 plsgenomics class]; }; +KODAMA = derive { name="KODAMA"; version="0.0.1"; sha256="199l6y5b98ags5p7jf150v0i0kcdxlsr2q0rgdpz9ra1hw1cjsfb"; depends=[class e1071 plsgenomics]; }; KOGMWU = derive { name="KOGMWU"; version="1.0"; sha256="0nk7vbppimrf01wnxsg2wjpagjrzs6gh3a6jlqy9bdfh0j4fm0kn"; depends=[pheatmap]; }; KRLS = derive { name="KRLS"; version="0.3-7"; sha256="0dx4b68xx3saqlkbpvvrhxjscl7jr5phwqvjywxsp4qxlr3ysl79"; depends=[]; }; KappaGUI = derive { name="KappaGUI"; version="1.2"; sha256="014d3lshq3avrncd8ydjpn59zalq46v29jrlz3g76wzr96xf5ckr"; depends=[irr]; }; -KappaV = derive { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[PresenceAbsence maptools rgeos sp]; }; +KappaV = derive { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[maptools PresenceAbsence rgeos sp]; }; Kendall = derive { name="Kendall"; version="2.2"; sha256="0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn"; depends=[boot]; }; KernSmooth = derive { name="KernSmooth"; version="2.23-14"; sha256="1dl22pncdlrlysmny0q89yg1s6iafdh75dh31l2hjy16gzlrbhk0"; depends=[]; }; -KernSmoothIRT = derive { name="KernSmoothIRT"; version="6.1"; sha256="1hq4sykddh9sg24qrnccii89nqxmq7hnldhn8wl6y62aj0h1nrqm"; depends=[Rcpp plotrix rgl Rcpp]; }; -Kernelheaping = derive { name="Kernelheaping"; version="0.5"; sha256="02hvb1w7z04nn44czxkkg7g1c1fyq0ki0v4shrpi5akwaac30dgj"; depends=[plyr evmix MASS corpcor]; }; -Kmisc = derive { name="Kmisc"; version="0.5.0"; sha256="0pbj3gf0bxkzczl6k4vgnxdss2wmsffqvcf73zjwvzvr8ibi5d95"; depends=[Rcpp data_table lattice knitr markdown Rcpp]; }; -KoNLP = derive { name="KoNLP"; version="0.76.9"; sha256="1q72irl4izb7f5bb99plpqnmpfdq4x4ymp4wm2bsyfjcxm649ya8"; depends=[rJava stringr hash tau Sejong]; }; +KernSmoothIRT = derive { name="KernSmoothIRT"; version="6.1"; sha256="1hq4sykddh9sg24qrnccii89nqxmq7hnldhn8wl6y62aj0h1nrqm"; depends=[plotrix Rcpp rgl]; }; +Kernelheaping = derive { name="Kernelheaping"; version="0.9"; sha256="0x42cv28c074zcb023plb3pw5ffrihwbl1jlwm2f4h68q84ra3a4"; depends=[evmix ks MASS plyr sparr]; }; +Kmisc = derive { name="Kmisc"; version="0.5.0"; sha256="0pbj3gf0bxkzczl6k4vgnxdss2wmsffqvcf73zjwvzvr8ibi5d95"; depends=[data_table knitr lattice markdown Rcpp]; }; +KoNLP = derive { name="KoNLP"; version="0.76.9"; sha256="1q72irl4izb7f5bb99plpqnmpfdq4x4ymp4wm2bsyfjcxm649ya8"; depends=[hash rJava Sejong stringr tau]; }; Kpart = derive { name="Kpart"; version="1.1"; sha256="1cyml48i1jvwy4xzymijwraqpnssnkrd81q3m7nyjd5m2czjvihv"; depends=[leaps]; }; -KrigInv = derive { name="KrigInv"; version="1.3.1"; sha256="0fcfv2vl572l8qp1ilhjai6zrw15bf1z41qm7xlfspfbj611ga7k"; depends=[DiceKriging pbivnorm rgenoud randtoolbox]; }; +KrigInv = derive { name="KrigInv"; version="1.3.1"; sha256="0fcfv2vl572l8qp1ilhjai6zrw15bf1z41qm7xlfspfbj611ga7k"; depends=[DiceKriging pbivnorm randtoolbox rgenoud]; }; L1pack = derive { name="L1pack"; version="0.3"; sha256="0lhixnfb2ga830z91z51r970l5s5qpavbwcmk1pi80180n11kv4i"; depends=[]; }; LARF = derive { name="LARF"; version="1.3"; sha256="0crg89d377wkga0bc42y8bfk6chg06afchhgnab6q4dirwv9360q"; depends=[]; }; LCA = derive { name="LCA"; version="0.1"; sha256="14nhx2fs18558zljnw56mdz3qx30v394llhzswxhznjfiiqc9z5h"; depends=[]; }; -LCAextend = derive { name="LCAextend"; version="1.2"; sha256="1y9azq9v42a3z5fq6gj8js89qblb2z93k4mg4jmw0wgkyv6mysfc"; depends=[boot mvtnorm rms kinship2]; }; +LCAextend = derive { name="LCAextend"; version="1.2"; sha256="1y9azq9v42a3z5fq6gj8js89qblb2z93k4mg4jmw0wgkyv6mysfc"; depends=[boot kinship2 mvtnorm rms]; }; LCFdata = derive { name="LCFdata"; version="2.0"; sha256="1x3vbr6hdviqvd6dxn1kb449g0q5zkfmjsmr5nxd2g82p69lv3xm"; depends=[]; }; LDAvis = derive { name="LDAvis"; version="0.2"; sha256="18fbnk5qd7icn3mgwwb3ld3c9n3j1z4ydc2pg2zizkrahhqxdswi"; depends=[proxy RJSONIO]; }; -LDOD = derive { name="LDOD"; version="1.0"; sha256="0mf2sy01yv57mqicrz08a17m6crigklx6fmw9zpxv7g85qw1iq4v"; depends=[Rsolnp Rmpfr]; }; -LDPD = derive { name="LDPD"; version="1.0.2"; sha256="0bs3s6x6f9rpp53x8ird6qnz9rfayf64askrr04hdjhlgw7cs0n7"; depends=[MASS nleqslv]; }; +LDOD = derive { name="LDOD"; version="1.0"; sha256="0mf2sy01yv57mqicrz08a17m6crigklx6fmw9zpxv7g85qw1iq4v"; depends=[Rmpfr Rsolnp]; }; +LDPD = derive { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; }; LDRTools = derive { name="LDRTools"; version="0.1"; sha256="1cr0v6qsdldy89p44lhr6hisqaz99qzab32kd1srdnnwnwl1q2y4"; depends=[]; }; LDcorSV = derive { name="LDcorSV"; version="1.3.1"; sha256="0i4npl90mkj8vry6ckq8bc4ydbl44vxichgsxyn80r6k9i71yl67"; depends=[MASS]; }; LDheatmap = derive { name="LDheatmap"; version="0.99-1"; sha256="1bj42chw1xyf8yg6cfv9p4yzsggng7zy6wrw6q22559pwm6c6vr0"; depends=[genetics]; }; LDtests = derive { name="LDtests"; version="1.0"; sha256="1jwqr7zlp9hv7vw8xp80xvrwbdv796wjgr914v393wfa07j5wbd1"; depends=[]; }; LEAPFrOG = derive { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; }; LGS = derive { name="LGS"; version="0.91"; sha256="0rzj1shapyg7hyzsb9v81dirwihd7bz9s861l75g3yl3p4qm8sg7"; depends=[]; }; -LICORS = derive { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[RColorBrewer mvtnorm zoo FNN fields locfit Matrix]; }; +LICORS = derive { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; }; LICurvature = derive { name="LICurvature"; version="0.1.1"; sha256="09hqar4kvksd816ya6jg349r0v6z2m2109hq6j4k1d2vchab4lni"; depends=[MASS]; }; -LIHNPSD = derive { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[sn moments BB Bolstad2 optimx Rmpfr]; }; -LIM = derive { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[limSolve diagram]; }; +LIHNPSD = derive { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[BB Bolstad2 moments optimx Rmpfr sn]; }; +LIM = derive { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[diagram limSolve]; }; LINselect = derive { name="LINselect"; version="0.0-1"; sha256="1n6nsspdp1ig8v9bclyga072hxqj2hb9n1smrqia8jrma07yaydl"; depends=[]; }; LIStest = derive { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; -LLSR = derive { name="LLSR"; version="0.0.1.9225"; sha256="0jn1svnzn89d55hal64fadhv5bmrc37g4qz3pmcd196s5frvyhai"; depends=[rootSolve XLConnect digest]; }; -LMERConvenienceFunctions = derive { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[Matrix lme4 LCFdata rgl fields mgcv]; }; +LLSR = derive { name="LLSR"; version="0.0.1.9425"; sha256="1s49m1sb4amap64yf7hh61nw95w00jqx2ghwryd1j1mbyp2j9br3"; depends=[digest rootSolve XLConnect]; }; +LMERConvenienceFunctions = derive { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; }; LMest = derive { name="LMest"; version="2.1"; sha256="1jbwbmamgxbbipzdpjmr7l9csydx55by4zd9h13lnaibdxr4xn5q"; depends=[MASS MultiLCIRT]; }; LOGICOIL = derive { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; -LOST = derive { name="LOST"; version="1.1"; sha256="19ar85dykbz0jlzbhlm3pcpffj4cizc6sj3gn93qdvpxkp64jfq9"; depends=[gdata shapes e1071 MASS miscTools]; }; +LOST = derive { name="LOST"; version="1.1"; sha256="19ar85dykbz0jlzbhlm3pcpffj4cizc6sj3gn93qdvpxkp64jfq9"; depends=[e1071 gdata MASS miscTools pcaMethods shapes]; }; LPCM = derive { name="LPCM"; version="0.44-8"; sha256="14627wk5azxm3y3a0qfy4qz57nxbdcasnv7djpqhk2gxf5smq19k"; depends=[]; }; LPS = derive { name="LPS"; version="1.0.10"; sha256="0gf3jmhfki01z8fm5xdx59gxvhgzqd10x2iwa8369iz9dvwbjk8j"; depends=[]; }; LPStimeSeries = derive { name="LPStimeSeries"; version="1.0-5"; sha256="0jmcy8076w4bzfnxaq2m3s60c1wdmywkwzfyrc19wdm8idf666wh"; depends=[RColorBrewer]; }; LPTime = derive { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; }; -LPmerge = derive { name="LPmerge"; version="1.6"; sha256="0xc06s2p7n151lzrp0dcrrxk8zmd816dc7qbnbcail5c1bhvdqhd"; depends=[Rglpk Matrix]; }; +LPmerge = derive { name="LPmerge"; version="1.6"; sha256="0xc06s2p7n151lzrp0dcrrxk8zmd816dc7qbnbcail5c1bhvdqhd"; depends=[Matrix Rglpk]; }; LS2W = derive { name="LS2W"; version="1.3-3"; sha256="0pdsv7ld0j116rh94m5y1i2mwrzc80fqxmc6ykc51i1sj6ws3i5k"; depends=[wavethresh]; }; -LS2Wstat = derive { name="LS2Wstat"; version="2.0-3"; sha256="0wkh1a6xbp3qg5favxsj166jcgdza16zki675gswxckana6s4is7"; depends=[LS2W matrixStats geoR RandomFields spdep]; }; +LS2Wstat = derive { name="LS2Wstat"; version="2.0-3"; sha256="0wkh1a6xbp3qg5favxsj166jcgdza16zki675gswxckana6s4is7"; depends=[geoR LS2W matrixStats RandomFields spdep]; }; LSAfun = derive { name="LSAfun"; version="0.4"; sha256="178lbk5f2vjcpxand15l1dlqf77zkxap22i9lid5db1bmqh9rpk9"; depends=[lsa rgl]; }; -LSC = derive { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[LICORS RColorBrewer fields gam Matrix]; }; +LSC = derive { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; }; LSD = derive { name="LSD"; version="3.0"; sha256="069p33aw6iwikp82b7b8wa77wlyjqwr4hcwvrgaxgwqdgn6jjg3k"; depends=[]; }; -LSMonteCarlo = derive { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[mvtnorm fBasics]; }; -LTPDvar = derive { name="LTPDvar"; version="1.1"; sha256="0zb3ffz5vw1zabgzhpcw1mzfqh4g7r0sq4iy31nzyv8smdwddqzw"; depends=[]; }; +LSMonteCarlo = derive { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; }; +LTPDvar = derive { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTR = derive { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; -LVMMCOR = derive { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[nlme MASS]; }; +LVMMCOR = derive { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[MASS nlme]; }; LVQTools = derive { name="LVQTools"; version="1.2"; sha256="06mninrrr49xsh00gfsp0vc418r6pdvq3m6sbnj0ywdyki106mni"; depends=[]; }; -LaF = derive { name="LaF"; version="0.6.2"; sha256="180xsqilpkql8my0dimsxj1kpmb3jl19l6bz8li8m63zii4xmwmp"; depends=[Rcpp Rcpp]; }; +LaF = derive { name="LaF"; version="0.6.2"; sha256="180xsqilpkql8my0dimsxj1kpmb3jl19l6bz8li8m63zii4xmwmp"; depends=[Rcpp]; }; Lahman = derive { name="Lahman"; version="3.0-1"; sha256="0w7vp3vjxhigyyqmmka4bw5v4pp5z3jzmf0krq8biwzrpx5qp86x"; depends=[]; }; -LakeMetabolizer = derive { name="LakeMetabolizer"; version="1.3.1"; sha256="1k764w8f30jfz1xkq9xjm9rwfdll5kp7jv3zc4932ck8cgqam3jv"; depends=[rLakeAnalyzer plyr]; }; +LakeMetabolizer = derive { name="LakeMetabolizer"; version="1.3.3"; sha256="06mgn5dgdw0gaw1za20cabs4bx6q5bgv0x09imxhskik76kini01"; depends=[plyr rLakeAnalyzer]; }; Lambda4 = derive { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; -LambertW = derive { name="LambertW"; version="0.5.1"; sha256="0mhw748nkikaq96azps7yyzkz5glibhb8rh6f748vj9lrq3wa5mn"; depends=[moments MASS gsl]; }; +LambertW = derive { name="LambertW"; version="0.5.1"; sha256="0mhw748nkikaq96azps7yyzkz5glibhb8rh6f748vj9lrq3wa5mn"; depends=[gsl MASS moments]; }; Laterality = derive { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjjzzh99s6rh4jsq0pbcgc902i0z2lmmivgs5qmd6"; depends=[ade4]; }; -LatticeKrig = derive { name="LatticeKrig"; version="3.4"; sha256="0qa16sxzj40nk4kmzcb7n4xxn7bqlkx7ar66qpqvh2dvcvi1d70d"; depends=[spam fields]; }; -LeLogicielR = derive { name="LeLogicielR"; version="1.2"; sha256="0h52pzrksi1mn55mnxbfi61hl7x61cnkhp450slfrk68f6kp30x6"; depends=[xtable RColorBrewer gdata IndependenceTests]; }; +LatticeKrig = derive { name="LatticeKrig"; version="3.4"; sha256="0qa16sxzj40nk4kmzcb7n4xxn7bqlkx7ar66qpqvh2dvcvi1d70d"; depends=[fields spam]; }; +LeLogicielR = derive { name="LeLogicielR"; version="1.2"; sha256="0h52pzrksi1mn55mnxbfi61hl7x61cnkhp450slfrk68f6kp30x6"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; LeafAngle = derive { name="LeafAngle"; version="1.2-1"; sha256="0g3i5300f3rvjz7g7z8s5n8xdcsp41gf1vnr4g36m1likddfpxlx"; depends=[]; }; LeafArea = derive { name="LeafArea"; version="0.1.0"; sha256="0gl31iv1pqb9w352h70y4x57dgfs4v15391fyhsc221803hk2fdn"; depends=[]; }; LearnBayes = derive { name="LearnBayes"; version="2.15"; sha256="0cz2rgqy1cmdz2h1qbdvfqxmmdzmg2z1scdlxr7k385anha13ja5"; depends=[]; }; @@ -1005,278 +1027,285 @@ LifeTables = derive { name="LifeTables"; version="0.2"; sha256="1n4mqypxm0rbi77y LinCal = derive { name="LinCal"; version="1.0"; sha256="1xr9jnna20hh78dh9wjg70jm8fhaxvdwql894kdp0y5h4pchkdph"; depends=[]; }; LinRegInteractive = derive { name="LinRegInteractive"; version="0.3-1"; sha256="0w7s3i6i2wnydh88l8lnzrh6w5zqkcwvms91iizis0mwd9af2jdl"; depends=[rpanel xtable]; }; LindenmayeR = derive { name="LindenmayeR"; version="0.1.4"; sha256="05aq7qmzb7a6kw24pwlg78ch17y945ggrxqn7l2rypn1vfm0br9x"; depends=[stringr]; }; -LinearizedSVR = derive { name="LinearizedSVR"; version="1.3"; sha256="0h3xmlnd5x37r5hdhcz90z5n1hsbr2ci3m939i89p1x9644i2l5g"; depends=[kernlab LiblineaR expectreg]; }; +LinearizedSVR = derive { name="LinearizedSVR"; version="1.3"; sha256="0h3xmlnd5x37r5hdhcz90z5n1hsbr2ci3m939i89p1x9644i2l5g"; depends=[expectreg kernlab LiblineaR]; }; Lmoments = derive { name="Lmoments"; version="1.1-6"; sha256="0jffnlamll5mwxrfqrb1qr8kjcn40y57kzd10kkm98vzfjcwg4y4"; depends=[]; }; LocFDRPois = derive { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; Lock5Data = derive { name="Lock5Data"; version="2.6"; sha256="0ckaac00ck5vyv0gv25l1zhgkm3char6ks1p4fl3vdl5gdyrc1pp"; depends=[]; }; LogConcDEAD = derive { name="LogConcDEAD"; version="1.5-9"; sha256="135vkp70q6gn75ds43aq08y13vrsgsgykssmnhrh6545i86vmhhi"; depends=[MASS mvtnorm]; }; -LogicForest = derive { name="LogicForest"; version="2.1.0"; sha256="0zdyyi6wka0568414f1kw91rx04y76n1k11wxd4r8svb5wybjhp5"; depends=[LogicReg CircStats gtools plotrix]; }; +LogicForest = derive { name="LogicForest"; version="2.1.0"; sha256="0zdyyi6wka0568414f1kw91rx04y76n1k11wxd4r8svb5wybjhp5"; depends=[CircStats gtools LogicReg plotrix]; }; LogicReg = derive { name="LogicReg"; version="1.5.6"; sha256="1izsdv8vcfv7lqq6i5kzawvrdbqizp2pvf5kv198cmav0g0p4ijd"; depends=[survival]; }; -LogisticDx = derive { name="LogisticDx"; version="0.1"; sha256="1w530panmbwf4qplzzj02q9g2lfzrkawxy66ibwdd14z9bwjdclj"; depends=[multcomp data_table pROC car gRbase rms statmod speedglm]; }; +LogisticDx = derive { name="LogisticDx"; version="0.1"; sha256="1w530panmbwf4qplzzj02q9g2lfzrkawxy66ibwdd14z9bwjdclj"; depends=[car data_table gRbase multcomp pROC rms speedglm statmod]; }; LogitNet = derive { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; }; LogrankA = derive { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; }; LoopAnalyst = derive { name="LoopAnalyst"; version="1.2-3"; sha256="0xbiy1xa2c6acfrzh6p9pa6wrds8ipskxq0f86ia9g5zkp1rjk2j"; depends=[nlme]; }; LowRankQP = derive { name="LowRankQP"; version="1.0.2"; sha256="0is7v4cy4w1g3wn4wa32iqv4awd1nwvfcb71b3yk5wj59lpm8gs3"; depends=[]; }; -Luminescence = derive { name="Luminescence"; version="0.4.3"; sha256="11nrgi403ryjj7y1p995fxcyqz117qawyharv1yad8f33l610d5m"; depends=[XML shape rgl matrixStats raster sp zoo bbmle data_table Rcpp minpack_lm Rcpp]; }; -M3 = derive { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[ncdf4 rgdal maps mapdata]; }; +Luminescence = derive { name="Luminescence"; version="0.4.4"; sha256="0b7a55aqishi6jwxlpkbakfr38brjd4c61n4mcbsg6nwg7qiz1v7"; depends=[bbmle data_table matrixStats minpack_lm raster Rcpp rgl shape XML zoo]; }; +M3 = derive { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; MADAM = derive { name="MADAM"; version="1.2.2"; sha256="09w5liqa3mpkbyvkwlabcgyg2b4316qpzq7pbpl0wxl74bsh76vq"; depends=[]; }; MAINT_Data = derive { name="MAINT.Data"; version="0.4"; sha256="0338q1yh7b0mbnmh3rbli8vq0fzxyx4qxx0143p615ahsf68jw1c"; depends=[]; }; -MALDIquant = derive { name="MALDIquant"; version="1.11"; sha256="1jnpmv44j9zry64wvnv37hcda61570hypnv16z99arjazpi4nzmn"; depends=[]; }; -MALDIquantForeign = derive { name="MALDIquantForeign"; version="0.9"; sha256="0bs6frqz462hrad16kjvbmq2s66bv3kpriav4hdz5a4klra389gl"; depends=[MALDIquant base64enc digest downloader readBrukerFlexData readMzXmlData XML]; }; -MAMA = derive { name="MAMA"; version="2.2.1"; sha256="1dcyfir6jv28jzvphiqrjns3jh2zg2201iwcvjzbmddl2isk9h0i"; depends=[metaMA xtable gtools xtable]; }; +MALDIquant = derive { name="MALDIquant"; version="1.12"; sha256="1grlqplcz41xdr3wlmn246xs3vk8y6qqq0n92srv2crlr8fw2yg2"; depends=[]; }; +MALDIquantForeign = derive { name="MALDIquantForeign"; version="0.9"; sha256="0bs6frqz462hrad16kjvbmq2s66bv3kpriav4hdz5a4klra389gl"; depends=[base64enc digest downloader MALDIquant readBrukerFlexData readMzXmlData XML]; }; +MAMA = derive { name="MAMA"; version="2.2.1"; sha256="1dcyfir6jv28jzvphiqrjns3jh2zg2201iwcvjzbmddl2isk9h0i"; depends=[genefilter GeneMeta gtools MergeMaid metaArray metaMA multtest xtable]; }; MAMS = derive { name="MAMS"; version="0.4"; sha256="0v4sa8cyjdkg7lrznl7jv8xqm6qf67jf946fd6ymbd0wpd7gxrgp"; depends=[mvtnorm]; }; MAMSE = derive { name="MAMSE"; version="0.1-3"; sha256="06q6raqbyi9zwg3wzaygqmfs3di55fh4bln3vscdw95kma4hz9km"; depends=[]; }; MAPA = derive { name="MAPA"; version="1.9"; sha256="1i143x2l6fq4vl8l8cagai580yqv446pdw4gw5qzxp85hgvm8bvg"; depends=[forecast]; }; MAPLES = derive { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; -MAR1 = derive { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[leaps bestglm]; }; -MARSS = derive { name="MARSS"; version="3.9"; sha256="0vn8axzz0nqdcl3w00waghz68z8pvfm764w11kxxigvjpw2plj31"; depends=[nlme mvtnorm KFAS]; }; +MAR1 = derive { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; }; +MARSS = derive { name="MARSS"; version="3.9"; sha256="0vn8axzz0nqdcl3w00waghz68z8pvfm764w11kxxigvjpw2plj31"; depends=[KFAS mvtnorm nlme]; }; MASS = derive { name="MASS"; version="7.3-40"; sha256="05mmbhswp5dqjd2c6v9w1z1710sm46d53j3prq8maj6bc9qr634y"; depends=[]; }; MASSTIMATE = derive { name="MASSTIMATE"; version="1.2"; sha256="1j9l8b5d518ag9ivzr1z4dd2m23y2ia1wdshx1krmshn8xsd6lwp"; depends=[]; }; -MAT = derive { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp Rcpp RcppArmadillo]; }; +MAT = derive { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; MATA = derive { name="MATA"; version="0.3"; sha256="006mnc4wqh9vdigfzrzx4csgczi0idvlwb6r23w5mmsfbn0ysdm5"; depends=[]; }; MATTOOLS = derive { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; }; -MAVIS = derive { name="MAVIS"; version="1.1"; sha256="1nbvm6nfwymim63xvfqpvyk1w5fv6cwfh6cl2089myimid22ws1l"; depends=[shiny shinyAce metafor MAc MAd quantreg ggplot2 compute_es SCMA SCRT shinyBS]; }; -MAVTgsa = derive { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach multcomp randomForest MASS]; }; +MAVIS = derive { name="MAVIS"; version="1.1"; sha256="1nbvm6nfwymim63xvfqpvyk1w5fv6cwfh6cl2089myimid22ws1l"; depends=[compute_es ggplot2 MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS]; }; +MAVTgsa = derive { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; }; MAc = derive { name="MAc"; version="1.1"; sha256="1lshi5rb8l2mpd302wskhlk5vz1wjidvbss9y69l63zjqdwjs7ch"; depends=[]; }; -MAclinical = derive { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[party plsgenomics st e1071]; }; +MAclinical = derive { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; }; MAd = derive { name="MAd"; version="0.8-2"; sha256="0mhys27rmzb0kal4jr8j2y44z4qq46fw260sxl8da9qqvplcwq1p"; depends=[]; }; -MBA = derive { name="MBA"; version="0.0-8"; sha256="09rs1861fz41dgicgh4f95v4zafh1jfxhqar1plpqqdx8z1gpxfl"; depends=[sp BH]; }; +MBA = derive { name="MBA"; version="0.0-8"; sha256="09rs1861fz41dgicgh4f95v4zafh1jfxhqar1plpqqdx8z1gpxfl"; depends=[BH sp]; }; MBCluster_Seq = derive { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; MBESS = derive { name="MBESS"; version="3.3.3"; sha256="12jsrxwdprrahqbk0i0js7lja81ydy385xmijlqk0slppd72dd9c"; depends=[]; }; MBI = derive { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; -MBmca = derive { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[robustbase chipPCR]; }; +MBmca = derive { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[chipPCR robustbase]; }; MC2toPath = derive { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; }; MCAPS = derive { name="MCAPS"; version="0.3-2"; sha256="1jvxl9xi102pcs3swxlx4jk76i7i4fll88c92k7m379ik3r36alb"; depends=[stashR]; }; MCAvariants = derive { name="MCAvariants"; version="1.0"; sha256="08c5qpklilj41agi5nzm4f5w41pdxk98i1wc1ahhnawc3n2cdbjz"; depends=[]; }; -MCDA = derive { name="MCDA"; version="0.0.8"; sha256="0zpjbshvv88dvqf6a6yw9zhzzh2j90b9yx8yg7q52c3l7a9lks6w"; depends=[Rglpk Kendall glpkAPI]; }; +MCDA = derive { name="MCDA"; version="0.0.10"; sha256="1ba6bzgy5dp6ga6jsbjdy4rm28mp4hj23wdqsp8hcchv0vfx9n2l"; depends=[glpkAPI Kendall Rglpk]; }; MCL = derive { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; -MCMC_OTU = derive { name="MCMC.OTU"; version="1.0.8"; sha256="1bdmvwxkm162m3237bgf42dm5kp3q0giwf0avrkla8qd834gqch0"; depends=[MCMCglmm ggplot2]; }; -MCMC_qpcr = derive { name="MCMC.qpcr"; version="1.1.7"; sha256="0hqbl38r2acvwmxkx7j6lab6an90ykia4bffjmy9a319l0dps5l4"; depends=[MCMCglmm ggplot2 coda]; }; +MCMC_OTU = derive { name="MCMC.OTU"; version="1.0.8"; sha256="1bdmvwxkm162m3237bgf42dm5kp3q0giwf0avrkla8qd834gqch0"; depends=[ggplot2 MCMCglmm]; }; +MCMC_qpcr = derive { name="MCMC.qpcr"; version="1.2"; sha256="1v8jkxxy7z1r3l9jlshhsq6634chf30d9bb1w80iqrjfn6aamn69"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive { name="MCMC4Extremes"; version="1.0"; sha256="1ib3rllvqjni9xg3634ankrr66f1lj376kl3xhfwnwbfsbi4a8pw"; depends=[evir]; }; -MCMCglmm = derive { name="MCMCglmm"; version="2.21"; sha256="1mjjp65w7pg2kxrx2qf0lh1kdi9d21xxj7s39zhi3q8ixw35h95r"; depends=[Matrix coda ape corpcor tensorA]; }; +MCMCglmm = derive { name="MCMCglmm"; version="2.21"; sha256="1mjjp65w7pg2kxrx2qf0lh1kdi9d21xxj7s39zhi3q8ixw35h95r"; depends=[ape coda corpcor Matrix tensorA]; }; MCMCpack = derive { name="MCMCpack"; version="1.3-3"; sha256="0s1j3047qp2fkwdix9galm05lp7jk7qxyic6lwpbd70hmj8ggs76"; depends=[coda MASS]; }; -MCPAN = derive { name="MCPAN"; version="1.1-15"; sha256="0811wrbp0nf4nj8kvq62ks8yksabib8r1a0gx3nr3v6avfnv08w1"; depends=[mvtnorm multcomp]; }; -MCPMod = derive { name="MCPMod"; version="1.0-8"; sha256="1kkak9x66dmannhxfdp6cybbjh2g43p03kyp7a4x1az7h4bnc92f"; depends=[mvtnorm lattice]; }; +MCPAN = derive { name="MCPAN"; version="1.1-15"; sha256="0811wrbp0nf4nj8kvq62ks8yksabib8r1a0gx3nr3v6avfnv08w1"; depends=[multcomp mvtnorm]; }; +MCPMod = derive { name="MCPMod"; version="1.0-8"; sha256="1kkak9x66dmannhxfdp6cybbjh2g43p03kyp7a4x1az7h4bnc92f"; depends=[lattice mvtnorm]; }; MCPerm = derive { name="MCPerm"; version="1.1.4"; sha256="0g65vzn43k6qrsglxd2kz245f662gl3c2gdz6qvvxa96v6q9lhh1"; depends=[metafor]; }; MCS = derive { name="MCS"; version="0.1.1"; sha256="0fxc5ri4ci3r5w1hdicqm1j0g6fwrl3wng7qwc2c0isagrn3vp4n"; depends=[]; }; +MCTM = derive { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MChtest = derive { name="MChtest"; version="1.0-2"; sha256="01lflilrp42m236cznn6qgzvv5v9fzpx6wcfxp3q545bw2xmbdvj"; depends=[]; }; MConjoint = derive { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; MDM = derive { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; }; -MDPtoolbox = derive { name="MDPtoolbox"; version="4.0.2"; sha256="04w0y5ib23l7nhj1947hwvfk6lpwwc11amqpyw1w53yj794g97wz"; depends=[Matrix linprog]; }; +MDPtoolbox = derive { name="MDPtoolbox"; version="4.0.2"; sha256="04w0y5ib23l7nhj1947hwvfk6lpwwc11amqpyw1w53yj794g97wz"; depends=[linprog Matrix]; }; MDR = derive { name="MDR"; version="1.2"; sha256="0g2fvvcwagml6635va87nc0ijzy0pypx5aqzz7mf5w13j0wpm24y"; depends=[lattice]; }; -MEET = derive { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[seqinr Matrix ROCR Hmisc KernSmooth]; }; +MEET = derive { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[Hmisc KernSmooth Matrix pcaMethods ROCR seqinr seqLogo]; }; MEMSS = derive { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; }; -MESS = derive { name="MESS"; version="0.3-2"; sha256="0x518awi2mxjh3vq69n1jv4d4dxjxhqfx1py48dijgd6w674d3q8"; depends=[geepack glmnet Matrix kinship2 mvtnorm]; }; -MExPosition = derive { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[prettyGraphs ExPosition]; }; +MESS = derive { name="MESS"; version="0.3-2"; sha256="0x518awi2mxjh3vq69n1jv4d4dxjxhqfx1py48dijgd6w674d3q8"; depends=[geepack glmnet kinship2 Matrix mvtnorm]; }; +MExPosition = derive { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; }; MF = derive { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; }; MFDA = derive { name="MFDA"; version="1.1-4"; sha256="0zf21al8ivmsxlf1i7kc01w0jx3s6650a034cdynz7axnxx28ncx"; depends=[gss mvtnorm]; }; -MFHD = derive { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[fda_usc deldir depth depthTools matrixStats]; }; +MFHD = derive { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; MGL = derive { name="MGL"; version="1.1"; sha256="17xkrq0wzq1gfa6k1lgf34l4ibwjk6j9rnig3l403zpykmf2ffs6"; depends=[]; }; MGRASTer = derive { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; }; MGSDA = derive { name="MGSDA"; version="1.1"; sha256="09z066sfjvx7awxc86gfw066wlz6svj7nxkhlas63a7zfbkiz7hl"; depends=[glmnet MASS]; }; MHadaptive = derive { name="MHadaptive"; version="1.1-8"; sha256="1w3bm82v8ahxrf0vqn0pznv7dqn212drinkz8y5kr1flx423l9ws"; depends=[MASS]; }; -MIICD = derive { name="MIICD"; version="2.1"; sha256="1lh3pbpxn7lbs68741ydw264qn9rap7kmcw49vnjvvzdp7hf24in"; depends=[survival MASS mstate]; }; -MIIVsem = derive { name="MIIVsem"; version="0.1"; sha256="098ybi5xdz7vvgd4vczqxm54gaq6cjsg0lxk319bx3z0da1a0bx5"; depends=[lavaan]; }; +MIICD = derive { name="MIICD"; version="2.1"; sha256="1lh3pbpxn7lbs68741ydw264qn9rap7kmcw49vnjvvzdp7hf24in"; depends=[MASS mstate survival]; }; +MIIVsem = derive { name="MIIVsem"; version="0.2"; sha256="15sv6fskhdm70vyz6y6wbxw9ghwinvqad7414qkn7lgymn5fm767"; depends=[lavaan Matrix]; }; MILC = derive { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; MIPHENO = derive { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; MImix = derive { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; }; +MInt = derive { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; }; MKLE = derive { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; }; MKmisc = derive { name="MKmisc"; version="0.98"; sha256="0ng6n1x2x1bg60byhpk212pihh7hirbjr4s89lzrwj854z93bv5l"; depends=[RColorBrewer robustbase]; }; +MLCIRTwithin = derive { name="MLCIRTwithin"; version="1.0"; sha256="01fp2pyiwpzsby3iwn9w9ry4nksy2llwzawrmba80s5m7mrcljbn"; depends=[limSolve MASS MultiLCIRT]; }; MLCM = derive { name="MLCM"; version="0.4.1"; sha256="1g6lmw75qdiq0fshxr3sqwm1a3y4928chxkggnfwwxp8hqw4r6px"; depends=[]; }; MLDS = derive { name="MLDS"; version="0.4.3"; sha256="1vql92y2dy1ba5l5xdysqzkzvkrr4bhclmjabn49c8qb2xc2rl40"; depends=[MASS]; }; MLEcens = derive { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; MLRMPA = derive { name="MLRMPA"; version="1.0"; sha256="0gfbi70b15ivv76l3i0zlm14cq398nlny40aci3vqxxd0m2lyyx5"; depends=[ClustOfVar]; }; MLmetrics = derive { name="MLmetrics"; version="1.0.0"; sha256="05j8hwcvfrsslib5k4w3xwkllb3rxdxazsld26zpjf3dc643ag9a"; depends=[]; }; -MM = derive { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[magic partitions emulator Oarray]; }; +MM = derive { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[emulator magic Oarray partitions]; }; +MM2S = derive { name="MM2S"; version="1.0.0"; sha256="0g5x375c58xsihj43dh19hx6vh87f8ppjibik5sb7lxvl1xms49c"; depends=[GSVA kknn lattice pheatmap]; }; +MM2Sdata = derive { name="MM2Sdata"; version="1.0.1"; sha256="1prx0gm9shizj45382qhja417y18jp6spk2hmgrzb7sbniyqs5pd"; depends=[Biobase]; }; MMIX = derive { name="MMIX"; version="1.2"; sha256="02c74qp48ixqh5cjp2006zgg4xz4bgxxq3csyhjl219if19kmj5m"; depends=[]; }; -MMMS = derive { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[survival glmnet]; }; +MMMS = derive { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; MMS = derive { name="MMS"; version="3.00"; sha256="06909912v2hr52s8k0a0830lbmdh05dcd7k47vydhbwq3rzf3ahg"; depends=[glmnet Matrix mht]; }; -MNM = derive { name="MNM"; version="1.0-1"; sha256="0fy43jfd7wak2rfdv5hdq7zc0zsxnbz9p69g6sla0zliibafg0q6"; depends=[ICSNP SpatialNP ellipse ICS]; }; +MNM = derive { name="MNM"; version="1.0-1"; sha256="0fy43jfd7wak2rfdv5hdq7zc0zsxnbz9p69g6sla0zliibafg0q6"; depends=[ellipse ICS ICSNP SpatialNP]; }; MNP = derive { name="MNP"; version="2.6-4"; sha256="068lssg565dw673dm8f5k6dbxl2vblnszg8wibzy3ijf96hp03cw"; depends=[MASS]; }; MOCCA = derive { name="MOCCA"; version="1.2"; sha256="04smpzn9x64w1vpw4szqa7dwnaak1ls6gpg7fgajs68mv5zivffa"; depends=[cclust clv]; }; MODISTools = derive { name="MODISTools"; version="0.94.6"; sha256="0jzs2dvhq48zjzb2rj6yxws8i2h7w2k00vg7xg5riad4v9j9jk0c"; depends=[RCurl XML]; }; -MOJOV = derive { name="MOJOV"; version="1.0.1"; sha256="11mcqxw83z4xx29s34v4rsbb3zvyhlb2lmvf97b77n455gsy5hab"; depends=[aod survey saws lattice]; }; +MOJOV = derive { name="MOJOV"; version="1.0.1"; sha256="11mcqxw83z4xx29s34v4rsbb3zvyhlb2lmvf97b77n455gsy5hab"; depends=[aod lattice saws survey]; }; MOrder = derive { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; }; -MPAgenomics = derive { name="MPAgenomics"; version="1.1.2"; sha256="1gwglzkip54si6i23y8s5hhkzrwmhvfyvsian9593ixy4kqlm2bz"; depends=[R_utils changepoint glmnet cghseg HDPenReg spikeslab]; }; +MPAgenomics = derive { name="MPAgenomics"; version="1.1.2"; sha256="1gwglzkip54si6i23y8s5hhkzrwmhvfyvsian9593ixy4kqlm2bz"; depends=[cghseg changepoint glmnet HDPenReg R_utils spikeslab]; }; MPDiR = derive { name="MPDiR"; version="0.1-16"; sha256="10g4dnysjnzf106qibqqcrxz3xw2nfh4ck1n1dlciwahr0f80j13"; depends=[]; }; MPINet = derive { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; }; MPSEM = derive { name="MPSEM"; version="0.2-6"; sha256="1vmdjnhxl8v7xw71kd1m66vhgaa1q0vvifd67v8fmii0i0i5i35y"; depends=[ape MASS]; }; -MPTinR = derive { name="MPTinR"; version="1.8.0"; sha256="0nxiicjdq41bbpfwgzlczm1zrgdilx29nyspvs8m1lx58br1hh8i"; depends=[numDeriv Brobdingnag Rcpp Rcpp RcppEigen]; }; +MPTinR = derive { name="MPTinR"; version="1.9.2"; sha256="1k9mkpwrvrkqh2467kklj9v111pjdwfblk7zpikk18v43qjlayb6"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; MPV = derive { name="MPV"; version="1.38"; sha256="1w3b0lszqmsz0yqvaz56x08xmy1m5ngl9m6p2pg9pjv13k8dv190"; depends=[]; }; MRCE = derive { name="MRCE"; version="2.0"; sha256="0fnd7ykcxi04pv1af5zbmavsp577vkw6pcrh011na5pzy2xrc49z"; depends=[QUIC]; }; MRCV = derive { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; -MRH = derive { name="MRH"; version="2.0"; sha256="0d6zfhyy8a0pjrr74lj0mcagh49pjh15yp4wa7g7j4qv8wfw5pkv"; depends=[survival KMsurv coda]; }; -MRIaggr = derive { name="MRIaggr"; version="1.1"; sha256="0yq5qjc04rgssjb8pskvrcnr3xv1dlzakily39p9ya526zm9lrmv"; depends=[Rcpp spam Matrix Rcpp RcppArmadillo]; }; -MRMR = derive { name="MRMR"; version="0.1.3"; sha256="1b3a4bkpcncl4sh7d81nk6b2dzhzqn9zhqdxv31jgippsqm2s3k2"; depends=[reshape2 ggplot2 lubridate lmtest plyr]; }; -MRSP = derive { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[matrixcalc Formula]; }; -MRsurv = derive { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[survival mvtnorm]; }; +MRH = derive { name="MRH"; version="2.0"; sha256="0d6zfhyy8a0pjrr74lj0mcagh49pjh15yp4wa7g7j4qv8wfw5pkv"; depends=[coda KMsurv survival]; }; +MRIaggr = derive { name="MRIaggr"; version="1.1.2"; sha256="0z410xkfyaqfrdiwkw29z7l6n15hdwd4dwbjn211sj6s90fa4q2w"; depends=[Rcpp RcppArmadillo]; }; +MRMR = derive { name="MRMR"; version="0.1.3"; sha256="1b3a4bkpcncl4sh7d81nk6b2dzhzqn9zhqdxv31jgippsqm2s3k2"; depends=[ggplot2 lmtest lubridate plyr reshape2]; }; +MRSP = derive { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[Formula matrixcalc]; }; +MRsurv = derive { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MRwarping = derive { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; }; -MSBVAR = derive { name="MSBVAR"; version="0.9-2"; sha256="1p6n8vbrlqqq1vbqvxnn0ffmnr462gslb1jkaf4vcrndbln5cclq"; depends=[KernSmooth xtable coda bit mvtnorm lattice]; }; +MSBVAR = derive { name="MSBVAR"; version="0.9-2"; sha256="1p6n8vbrlqqq1vbqvxnn0ffmnr462gslb1jkaf4vcrndbln5cclq"; depends=[bit coda KernSmooth lattice mvtnorm xtable]; }; MSG = derive { name="MSG"; version="0.2.2"; sha256="18siw81pa02yg0zs40pavwm88yz7kfi60fislmjpwnl2207a6fhf"; depends=[RColorBrewer]; }; -MSIseq = derive { name="MSIseq"; version="0.99.1"; sha256="1wg0j0qr2g2lhhw57cvlawd5hik0bmqb66ynxgn62sgx1nkj3g74"; depends=[RWeka rJava R_utils]; }; +MSIseq = derive { name="MSIseq"; version="1.0.0"; sha256="1v2why1k6pjsc04044nr74571p7541nciq7xkzmya3jq6dw878j3"; depends=[IRanges R_utils rJava RWeka]; }; MSQC = derive { name="MSQC"; version="1.0.1"; sha256="1vs9kygjg9f4sr1m80hdn03gdhbdqfjamqxhbs9zha8smjrsgisw"; depends=[rgl]; }; -MST = derive { name="MST"; version="1.0"; sha256="142xhg7fpf27ba9gi3dxbmpcpmz56dks0rp4ybqpcxiq3z7wacxp"; depends=[survival MASS]; }; -MSeasy = derive { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap clValid cluster fpc]; }; +MST = derive { name="MST"; version="1.0"; sha256="142xhg7fpf27ba9gi3dxbmpcpmz56dks0rp4ybqpcxiq3z7wacxp"; depends=[MASS survival]; }; +MSeasy = derive { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; }; MSeasyTkGUI = derive { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; MSwM = derive { name="MSwM"; version="1.2"; sha256="01l23ia20y3nchykha4vz6sa757zmbvgx2315cacxfcqk9rgs08c"; depends=[nlme]; }; -MTS = derive { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[Rcpp fGarch mvtnorm Rcpp]; }; -MTurkR = derive { name="MTurkR"; version="0.6"; sha256="0kmi1x9xsqwi7llgwmkmnkn2hir5r9nryhqh8lrh41fwps4la9x8"; depends=[RCurl digest XML]; }; -MUCflights = derive { name="MUCflights"; version="0.0-3"; sha256="03ksvv5nyzlqiml1nz405r3yqb2cl35kpm1h61zcv2nqq8cxqshs"; depends=[XML geosphere sp RSQLite NightDay]; }; +MTS = derive { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[fGarch mvtnorm Rcpp]; }; +MTurkR = derive { name="MTurkR"; version="0.6.5.1"; sha256="0yg2ycramz0rpac4bfyq8wciyv9jl93al0qsdbzrl7c37z151w3l"; depends=[digest RCurl XML]; }; +MUCflights = derive { name="MUCflights"; version="0.0-3"; sha256="03ksvv5nyzlqiml1nz405r3yqb2cl35kpm1h61zcv2nqq8cxqshs"; depends=[geosphere NightDay RSQLite sp XML]; }; MVA = derive { name="MVA"; version="1.0-5"; sha256="18x075hjqhrjwxivvrixgs6yc67il3n5p1m7v2wymcf8h2mkki91"; depends=[HSAUR2]; }; -MVB = derive { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; -MVN = derive { name="MVN"; version="3.9"; sha256="1l6bib1gl5nj7p1dk6mbmflp9p5sgm405q3l53pqmq09jm55flh6"; depends=[nortest moments MASS robustbase mvoutlier plyr psych]; }; +MVB = derive { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; +MVN = derive { name="MVN"; version="4.0"; sha256="1ql50ch6qig7r0xnfv5f74k3vc32k04jgmvjbndgyzbacn2ibrm7"; depends=[MASS moments mvoutlier nortest plyr psych robustbase]; }; MVR = derive { name="MVR"; version="1.20.0"; sha256="1wwzws9116ck14g6xd1svmwc9wkr8piwb24bddnzri388p8qkgb4"; depends=[statmod]; }; -MVar_pt = derive { name="MVar.pt"; version="1.0"; sha256="0wzc2r5psla8khyrkd7p8y23cxyn5bsy8vxglh2p3mpayfzi8k2a"; depends=[]; }; -MXM = derive { name="MXM"; version="0.3"; sha256="14kw4shc0jp6jrs8afimy13jssah0agwa3p5ay2py1zfid43k63y"; depends=[gRbase VGAM MASS pcalg survival]; }; +MVar_pt = derive { name="MVar.pt"; version="1.1"; sha256="0jcxsf0c9klnj19j8shiadxrbh3wa7da2vywk352ylirl5vdv2yl"; depends=[]; }; +MXM = derive { name="MXM"; version="0.3.1"; sha256="06sp6hy0dparya6fcfbiyhh0h10r8ai8fmh4rq2fz0dq6prk95ic"; depends=[]; }; MaXact = derive { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; -Maeswrap = derive { name="Maeswrap"; version="1.4.11"; sha256="15i36xj2bdzhly78614077s8k2z75a1gmzl2crsfgvhyyjdax8r7"; depends=[rgl lattice geometry]; }; +Maeswrap = derive { name="Maeswrap"; version="1.4.11"; sha256="15i36xj2bdzhly78614077s8k2z75a1gmzl2crsfgvhyyjdax8r7"; depends=[geometry lattice rgl]; }; ManyTests = derive { name="ManyTests"; version="1.1"; sha256="11xk3j2q7w6b6ljmp7b8gni0khpmpvcvzwxypy0w8ihi2gaczsxj"; depends=[]; }; Map2NCBI = derive { name="Map2NCBI"; version="1.0"; sha256="02cgmayrhkyji0cwr6n0f439njq29mzna7sgzkq6ml45njm9m5nh"; depends=[]; }; -MapGAM = derive { name="MapGAM"; version="0.7-5"; sha256="0bpswdi7iic7hsqrwcxwv27n4095m292nv5db6d4mj9gvp13h7i7"; depends=[sp gam maptools]; }; +MapGAM = derive { name="MapGAM"; version="0.7-5"; sha256="0bpswdi7iic7hsqrwcxwv27n4095m292nv5db6d4mj9gvp13h7i7"; depends=[gam maptools sp]; }; MareyMap = derive { name="MareyMap"; version="1.2"; sha256="1l7s1ffl9bg1zx5nyb1r3dba188mxiaprdda3gqm2cr1f33jmr51"; depends=[tkrplot]; }; -MarkowitzR = derive { name="MarkowitzR"; version="0.1502"; sha256="0srrmzr4msn04w5f6s6qs51db8jccpfj10sighsv1l7d056n2xjn"; depends=[matrixcalc sandwich gtools]; }; +MarkowitzR = derive { name="MarkowitzR"; version="0.1502"; sha256="0srrmzr4msn04w5f6s6qs51db8jccpfj10sighsv1l7d056n2xjn"; depends=[gtools matrixcalc sandwich]; }; MasterBayes = derive { name="MasterBayes"; version="2.52"; sha256="12ka2l4x6psij7wzbb98lwx5shgwzn5v44qfpiw1i6g236yp0mhm"; depends=[coda genetics gtools kinship2]; }; MatchIt = derive { name="MatchIt"; version="2.4-21"; sha256="02kii2143i8zywxlf049l841b1y4hqjwkr1cnyv6b8b7y7lz2m5v"; depends=[MASS]; }; Matching = derive { name="Matching"; version="4.8-3.4"; sha256="04m647342j4yi74ds7ddwnyrf58qdy7k3mc067k3p779qavq2ka1"; depends=[MASS]; }; -MatchingFrontier = derive { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[MASS igraph segmented]; }; -Matrix = derive { name="Matrix"; version="1.2-0"; sha256="0ywz213p6cpwnklxd81hzdyxjzagaj6cn32ycc5rcnhxy30d7kk5"; depends=[lattice]; }; +MatchingFrontier = derive { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[igraph MASS segmented]; }; +Matrix = derive { name="Matrix"; version="1.2-1"; sha256="0farq1x1qhgzdwqqd4bn3g6hbv91hk5sm2v00vphf0zgj2fg2qm6"; depends=[lattice]; }; MatrixEQTL = derive { name="MatrixEQTL"; version="2.1.1"; sha256="1bvfhzhvm1psgq51kpjcpp7bidaxcrxdigmv6abfi3jk5kyzn5ik"; depends=[]; }; MatrixModels = derive { name="MatrixModels"; version="0.4-0"; sha256="1jcjsyha0xmz264g1haj7x8zpzjmp1m0jl39h5bf8r45hhlaxcsa"; depends=[Matrix]; }; MaxPro = derive { name="MaxPro"; version="3.1-2"; sha256="1y2g8a8yvzb24dj0z82nzfr6ylplb9sbi2dmj7f3pb4s3yr5zm8y"; depends=[nloptr]; }; -MazamaSpatialUtils = derive { name="MazamaSpatialUtils"; version="0.2.3"; sha256="09a7zd0jkf5gx0zybbnlzcmzhzdiwh15mjg2nfyy00lrjbhvq83i"; depends=[dplyr rgdal rgeos rvest sp stringr]; }; +MazamaSpatialUtils = derive { name="MazamaSpatialUtils"; version="0.2.4"; sha256="04ljjzcqfgy136wviz92gdavqzjhbai1v69nj4kg6vc6nwvkhnbx"; depends=[dplyr rgdal rgeos rvest sp stringr]; }; McParre = derive { name="McParre"; version="1.0.1"; sha256="16bfca867drbknzc6bylg8paa8p72l23wgjpyvy4pd9z6lpgmhdy"; depends=[MASS]; }; McSpatial = derive { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; -Mcomp = derive { name="Mcomp"; version="2.05"; sha256="0wggj0h0qxjwym1vz1gk9iwnwia4lpjlk6n46l6hinsdax3g221y"; depends=[tseries forecast]; }; +Mcomp = derive { name="Mcomp"; version="2.05"; sha256="0wggj0h0qxjwym1vz1gk9iwnwia4lpjlk6n46l6hinsdax3g221y"; depends=[forecast tseries]; }; MedOr = derive { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; -MenuCollection = derive { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[RGtk2 RGtk2Extras gplots]; }; -MergeGUI = derive { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[gWidgetsRGtk2 ggplot2 cairoDevice rpart]; }; +MenuCollection = derive { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[gplots RGtk2 RGtk2Extras]; }; +MergeGUI = derive { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; }; MetABEL = derive { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; MetFns = derive { name="MetFns"; version="1.0"; sha256="03kx8cr4c6mgjincf87m305fhryh1c42hdzr1ljl63affnlp7nfp"; depends=[astroFns plotrix]; }; MetNorm = derive { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; }; -MetSizeR = derive { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[mvtnorm MetabolAnalyze cairoDevice gWidgets gWidgetsRGtk2]; }; -MetStaT = derive { name="MetStaT"; version="1.0"; sha256="0400gx6i8xlkm51da98ap91c3hgrkgfgxswn0plaxfry3625khkp"; depends=[MASS abind pls]; }; -MetaDE = derive { name="MetaDE"; version="1.0.5"; sha256="1ijg64bri5jn2d3d13q1gvvfyqmbh6gn0lk6dkihixf0jwvjdyqi"; depends=[survival combinat]; }; -MetaLandSim = derive { name="MetaLandSim"; version="0.2"; sha256="0lb058kcqpylw27hlmkxmpndsiw71g865fgapw6d599brgi91a8i"; depends=[spatstat sp e1071 fgui googleVis maptools rgeos spgrass6 raster]; }; +MetSizeR = derive { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; +MetStaT = derive { name="MetStaT"; version="1.0"; sha256="0400gx6i8xlkm51da98ap91c3hgrkgfgxswn0plaxfry3625khkp"; depends=[abind MASS pls]; }; +MetaDE = derive { name="MetaDE"; version="1.0.5"; sha256="1ijg64bri5jn2d3d13q1gvvfyqmbh6gn0lk6dkihixf0jwvjdyqi"; depends=[Biobase combinat impute survival]; }; +MetaLandSim = derive { name="MetaLandSim"; version="0.2"; sha256="0lb058kcqpylw27hlmkxmpndsiw71g865fgapw6d599brgi91a8i"; depends=[Biobase e1071 fgui googleVis maptools raster rgeos sp spatstat spgrass6]; }; MetaPCA = derive { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; }; -MetaQC = derive { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[proto foreach iterators]; }; +MetaQC = derive { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive { name="MetaSKAT"; version="0.40"; sha256="1jxs32hvsw6wzci9f1rc7sw1dfyazdm2d57wcmhkggfg3hkdn1vv"; depends=[SKAT]; }; -MetabolAnalyze = derive { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[mclust mvtnorm ellipse gtools gplots]; }; -Metatron = derive { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 mpt Matrix]; }; +MetabolAnalyze = derive { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; }; +Metatron = derive { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 Matrix mpt]; }; Meth27QC = derive { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; }; MethComp = derive { name="MethComp"; version="1.22.2"; sha256="0f9l36d00x054yqgbw0dckc7ldlgap6vnbb03n6n5yz47xxg0ic3"; depends=[nlme]; }; Methplot = derive { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; Metrics = derive { name="Metrics"; version="0.1.1"; sha256="1yqhlsmhh9sl7qngl85b7qb980s54h13wwznpakyvvwlar64yqrw"; depends=[]; }; MfUSampler = derive { name="MfUSampler"; version="0.9.1"; sha256="0fw1jw2ljsxmvnaayn7zdrrsnbbkkb5n9nm396321p36bqkf1pk3"; depends=[ars]; }; +MiRSEA = derive { name="MiRSEA"; version="1.0"; sha256="1azabfwd83x6g3fpwdqss5b0rxj8zfmj9972bd0brk8z39wggsrr"; depends=[]; }; MiST = derive { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; }; -MicSim = derive { name="MicSim"; version="1.0.8"; sha256="0i9vyim7wfnaf1zcs1vz6yc7xkr1hzhqcccbcvg15vkzhr23f8lg"; depends=[chron snowfall rlecuyer]; }; -MicroDatosEs = derive { name="MicroDatosEs"; version="0.6.3.1"; sha256="17ka9bdic8vdr0aabmgm216zm9a8jppxll042b5ric4vzplah17d"; depends=[memisc Hmisc]; }; +MicSim = derive { name="MicSim"; version="1.0.8"; sha256="0i9vyim7wfnaf1zcs1vz6yc7xkr1hzhqcccbcvg15vkzhr23f8lg"; depends=[chron rlecuyer snowfall]; }; +MicroDatosEs = derive { name="MicroDatosEs"; version="0.6.3.1"; sha256="17ka9bdic8vdr0aabmgm216zm9a8jppxll042b5ric4vzplah17d"; depends=[Hmisc memisc]; }; MicroStrategyR = derive { name="MicroStrategyR"; version="1.0-1"; sha256="0a6bk0wnwx8zy9081n7wb12lidgckrhn350r0q5m6aa82l6l8ihi"; depends=[gWidgetsRGtk2]; }; -MigClim = derive { name="MigClim"; version="1.6"; sha256="171pnalidyw0v2fcjdc3kyrq5kg035kwj5xl8zwgn3hlanpaljvp"; depends=[SDMTools raster]; }; +MigClim = derive { name="MigClim"; version="1.6"; sha256="171pnalidyw0v2fcjdc3kyrq5kg035kwj5xl8zwgn3hlanpaljvp"; depends=[raster SDMTools]; }; MindOnStats = derive { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; Miney = derive { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; }; MissMech = derive { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l4wxlahk2gmawzv9rhyibwzf0yp60cb1sv9"; depends=[]; }; -MissingDataGUI = derive { name="MissingDataGUI"; version="0.2-2"; sha256="07a3y8l0r7a0f7zmp5pg2aqkf7hyk8cf562x3m8b38w96vir4vr0"; depends=[gWidgetsRGtk2 ggplot2 GGally cairoDevice reshape]; }; +MissingDataGUI = derive { name="MissingDataGUI"; version="0.2-2"; sha256="07a3y8l0r7a0f7zmp5pg2aqkf7hyk8cf562x3m8b38w96vir4vr0"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; }; MitISEM = derive { name="MitISEM"; version="1.0"; sha256="03305ds3rgr29z4idaxzsm83igiygna2sqd5vpixklngsrp8w341"; depends=[mvtnorm]; }; -MixAll = derive { name="MixAll"; version="1.0.2"; sha256="10jwiri659i2h0gkaxc41gjvff4v465syxr0nppn1qqz5910jql0"; depends=[rtkpp Rcpp rtkpp]; }; -MixGHD = derive { name="MixGHD"; version="1.5"; sha256="1wjjz300yr9mj5kwrpybdji0znqrh26i2jlhbjcxkn3j4frkhlh3"; depends=[MASS mclust Bessel mvtnorm ghyp numDeriv mixture]; }; +MixAll = derive { name="MixAll"; version="1.0.2"; sha256="10jwiri659i2h0gkaxc41gjvff4v465syxr0nppn1qqz5910jql0"; depends=[Rcpp rtkpp]; }; +MixGHD = derive { name="MixGHD"; version="1.6"; sha256="0lmv1yspjn9m5kw0zd2sabgy33zd77p0nqfvs9cvy3ldvz35095i"; depends=[Bessel ghyp MASS mclust mixture mvtnorm numDeriv]; }; MixMAP = derive { name="MixMAP"; version="1.3.1"; sha256="0m6m9wi0ain7z96s6z6kmwjisfqm3al6m459y5zr2l1cdbdpxfpv"; depends=[lme4]; }; -MixSim = derive { name="MixSim"; version="1.0-9"; sha256="16kg12784z82x8f1vscv9d5yakmki2m8gqr4hy9417c31xfkk3zy"; depends=[MASS]; }; +MixSim = derive { name="MixSim"; version="1.1-1"; sha256="1a1hrsnm6zv9vag7hq8plrkjr4ak26w7k58wdkgxsjb9r6qzm1yf"; depends=[MASS]; }; MixedTS = derive { name="MixedTS"; version="1.0.1"; sha256="0ljal2jxscwrv439blavf5gjxbi3k3jfqqmwblzfvc05dqgvdk0b"; depends=[MASS]; }; MixtureInf = derive { name="MixtureInf"; version="1.0-1"; sha256="1cq8zzhhb6vg545n9aw1b9fhx025zy75dd6pw161svsb5776py5d"; depends=[]; }; -Mobilize = derive { name="Mobilize"; version="2.16-4"; sha256="16vdvpwspa0igb52zvzyk0if9l4wq1hm8y42572i8sh1m82wyyfs"; depends=[Ohmage ggplot2 wordcloud reshape2]; }; -Modalclust = derive { name="Modalclust"; version="0.6"; sha256="16h90d30jwdrla5627rva0yf69n0zib9z5fl3k5awlqfscz4fw26"; depends=[mvtnorm zoo class]; }; +Mobilize = derive { name="Mobilize"; version="2.16-4"; sha256="16vdvpwspa0igb52zvzyk0if9l4wq1hm8y42572i8sh1m82wyyfs"; depends=[ggplot2 Ohmage reshape2 wordcloud]; }; +Modalclust = derive { name="Modalclust"; version="0.6"; sha256="16h90d30jwdrla5627rva0yf69n0zib9z5fl3k5awlqfscz4fw26"; depends=[class mvtnorm zoo]; }; ModelGood = derive { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; }; -ModelMap = derive { name="ModelMap"; version="3.0.15"; sha256="1d7qn1p4fv94bdlr6if64vxl9yknavix4gzmpg3kxwlrxaz2g8a2"; depends=[randomForest raster gbm rgdal fields HandTill2001 PresenceAbsence]; }; -Momocs = derive { name="Momocs"; version="0.2-6"; sha256="187w6xyswlg5nac6lbprcwvj63gka832n33vlj2ix810vqyxd0fk"; depends=[ade4 sp shapes jpeg spdep ape]; }; +ModelMap = derive { name="ModelMap"; version="3.0.15"; sha256="1d7qn1p4fv94bdlr6if64vxl9yknavix4gzmpg3kxwlrxaz2g8a2"; depends=[fields gbm HandTill2001 PresenceAbsence randomForest raster rgdal]; }; +Momocs = derive { name="Momocs"; version="0.2-6"; sha256="187w6xyswlg5nac6lbprcwvj63gka832n33vlj2ix810vqyxd0fk"; depends=[ade4 ape jpeg shapes sp spdep]; }; MonetDB_R = derive { name="MonetDB.R"; version="0.9.7"; sha256="0b5agr3dl0ps7fnqw2fsgzb2ysqzvg2ymhxz3xyn08djgz6w7vkm"; depends=[DBI digest]; }; MonoPoly = derive { name="MonoPoly"; version="0.2-8"; sha256="0lpqqpahpss4q9iddh2p4h6klsrjhg3v6h1wfb70vy0miyhqb93h"; depends=[quadprog]; }; -Morpho = derive { name="Morpho"; version="2.2"; sha256="03j121ghswr1kwq40krk3b4ycn44l9ga3bp64igknvpnqikp5qcb"; depends=[Rvcg rgl colorRamps foreach Matrix yaImpute doParallel Rcpp Rcpp RcppArmadillo]; }; +Morpho = derive { name="Morpho"; version="2.2"; sha256="03j121ghswr1kwq40krk3b4ycn44l9ga3bp64igknvpnqikp5qcb"; depends=[colorRamps doParallel foreach Matrix Rcpp RcppArmadillo rgl Rvcg yaImpute]; }; MorseGen = derive { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; -MortalitySmooth = derive { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[svcm lattice]; }; -MplusAutomation = derive { name="MplusAutomation"; version="0.6-3"; sha256="1zb4drqaswzwssky1bp69p3p8inqfdvxg2ji9bjrzf3vf0b5fl4p"; depends=[boot plyr gsubfn coda xtable lattice texreg]; }; -Mposterior = derive { name="Mposterior"; version="0.1.2"; sha256="16a7wvg41ld2bhbss480js5h12r41nl7jmc3y4jsbv1lr5py4ymy"; depends=[Rcpp Rcpp RcppArmadillo]; }; +MortalitySmooth = derive { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; }; +MplusAutomation = derive { name="MplusAutomation"; version="0.6-3"; sha256="1zb4drqaswzwssky1bp69p3p8inqfdvxg2ji9bjrzf3vf0b5fl4p"; depends=[boot coda gsubfn lattice plyr texreg xtable]; }; +Mposterior = derive { name="Mposterior"; version="0.1.2"; sha256="16a7wvg41ld2bhbss480js5h12r41nl7jmc3y4jsbv1lr5py4ymy"; depends=[Rcpp RcppArmadillo]; }; MuFiCokriging = derive { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; -MuMIn = derive { name="MuMIn"; version="1.13.4"; sha256="1zk8glw5laismhhfgkbxk05qjmzv80bkp3ib45x7i05s2mqy1yxn"; depends=[]; }; +MuMIn = derive { name="MuMIn"; version="1.14.0"; sha256="0zwwwp7979kss5871vp6975maqm8gsc0hn75fxq90l0xcyipxvcy"; depends=[Matrix]; }; MultEq = derive { name="MultEq"; version="2.3"; sha256="0fshv7i97q8j7vzkxrv6f20kpqr1kp9v6pbw50g86h37l0jghj7r"; depends=[]; }; MultNonParam = derive { name="MultNonParam"; version="1.0"; sha256="0xff81wjmyw2d38r0v3n7vv0dasg9rlrc0zrdwsmfd83zpvxqj5m"; depends=[]; }; MultiCNVDetect = derive { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; -MultiJoin = derive { name="MultiJoin"; version="0.1"; sha256="02wdn2rcci4n553jjd7ivw3afp6w6zcjc002yj0pvi0ai3jw6p92"; depends=[]; }; -MultiLCIRT = derive { name="MultiLCIRT"; version="2.9"; sha256="0anb041nd56rrryhv5w1pb0axxsfkqas177r6yf5h5gbc4vn3758"; depends=[MASS limSolve]; }; -MultiMeta = derive { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[gtable mvtnorm expm ggplot2 reshape2]; }; -MultiOrd = derive { name="MultiOrd"; version="2.1"; sha256="12y5cg06qyaz72gk3bi5pqkd55n72rz056y9va49znlsqph09x2x"; depends=[mvtnorm corpcor Matrix psych]; }; -MultiPhen = derive { name="MultiPhen"; version="2.0.0"; sha256="05w7khzyxswlsz4sxhaakbz828zrdya1y8qcsdfc6w7wgl8qpmj9"; depends=[MASS abind epitools meta HardyWeinberg RColorBrewer gplots]; }; +MultiLCIRT = derive { name="MultiLCIRT"; version="2.9"; sha256="0anb041nd56rrryhv5w1pb0axxsfkqas177r6yf5h5gbc4vn3758"; depends=[limSolve MASS]; }; +MultiMeta = derive { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[expm ggplot2 gtable mvtnorm reshape2]; }; +MultiOrd = derive { name="MultiOrd"; version="2.1"; sha256="12y5cg06qyaz72gk3bi5pqkd55n72rz056y9va49znlsqph09x2x"; depends=[corpcor Matrix mvtnorm psych]; }; +MultiPhen = derive { name="MultiPhen"; version="2.0.0"; sha256="05w7khzyxswlsz4sxhaakbz828zrdya1y8qcsdfc6w7wgl8qpmj9"; depends=[abind epitools gplots HardyWeinberg MASS meta RColorBrewer]; }; +MultiRR = derive { name="MultiRR"; version="1.0"; sha256="0m2v13cygabjbsz0fwxwh03csd3yfdpzk4yfvx8lrim9m90026hz"; depends=[lme4 MASS]; }; MultiSV = derive { name="MultiSV"; version="0.0-67"; sha256="0924lvkx12aqjxxz8bwqdi4h9xc2acf8aynllx0m45ip5r4gh1g2"; depends=[nlme reshape]; }; Multiclasstesting = derive { name="Multiclasstesting"; version="1.3.9"; sha256="09y3gnarqv15wgmk545qrwpjwb2ilv2b2kc74cxzcb2p1lflfjzm"; depends=[]; }; MultinomialCI = derive { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; }; Myrrix = derive { name="Myrrix"; version="1.1"; sha256="15w1dic6p983g2gajbm4pws743z68y0k2hxrdwx6ppnzn9rk07rs"; depends=[Myrrixjars rJava]; }; Myrrixjars = derive { name="Myrrixjars"; version="1.0-1"; sha256="0dy82l0903pl4c31hbllscfmxrv3bd5my5b2kv5d3x5zq0x99df0"; depends=[rJava]; }; NADA = derive { name="NADA"; version="1.5-6"; sha256="0y7njsvaypcarzygsqpqla20h5xmidzjmya4rbq39gg6gkc0ky27"; depends=[survival]; }; -NAM = derive { name="NAM"; version="1.3.2"; sha256="0rzhqs9qcry3w4q1lcfzmp4fndbmj4bm8981i7nn4cipcjfx7635"; depends=[Rcpp randomForest Rcpp]; }; -NAPPA = derive { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9az6kdz9xw7m98z1gnvl2g7damvn3"; depends=[plyr NanoStringNorm]; }; +NAM = derive { name="NAM"; version="1.3.2"; sha256="0rzhqs9qcry3w4q1lcfzmp4fndbmj4bm8981i7nn4cipcjfx7635"; depends=[randomForest Rcpp]; }; +NAPPA = derive { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9az6kdz9xw7m98z1gnvl2g7damvn3"; depends=[NanoStringNorm plyr]; }; NB = derive { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; }; NBDdirichlet = derive { name="NBDdirichlet"; version="1.01"; sha256="07j9pcha6clrji8p4iw466hscgs6w43q0f7278xykqcdnk39gkyv"; depends=[]; }; -NBPSeq = derive { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[]; }; -NCmisc = derive { name="NCmisc"; version="1.1.4"; sha256="0hbrad72lzp0vi0j9lvpmvdih7vijqghqng1f0hjd8fg8hjvcflg"; depends=[proftools dplyr]; }; -NEff = derive { name="NEff"; version="1.0"; sha256="0ksnmxjy2ms2z7rq4rddnykydwlb4f9c13nak5f8m65pfjcgv3sk"; depends=[msm bit]; }; -NHANES = derive { name="NHANES"; version="1.0"; sha256="18sy2x61bnily3fz0rs61y44kn6y2ikgrzr6nhgm6fkqv02ffdg8"; depends=[]; }; -NHEMOtree = derive { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[partykit emoa sets rpart]; }; -NHMM = derive { name="NHMM"; version="3.5"; sha256="03il5y6vz5zyadydhk3qg6sd6fmsw7md9if1igyy9643mxxm1g0f"; depends=[BayesLogit msm MCMCpack MASS Rcpp Rcpp]; }; +NBPSeq = derive { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; }; +NCmisc = derive { name="NCmisc"; version="1.1.4"; sha256="0hbrad72lzp0vi0j9lvpmvdih7vijqghqng1f0hjd8fg8hjvcflg"; depends=[dplyr proftools]; }; +NEff = derive { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; }; +NHANES = derive { name="NHANES"; version="2.0"; sha256="0bdsccr1g2vnisllnmj2z4sma5hdp2iqm1fpr0kmbv1dnkpmxd41"; depends=[]; }; +NHEMOtree = derive { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; }; +NHMM = derive { name="NHMM"; version="3.5"; sha256="03il5y6vz5zyadydhk3qg6sd6fmsw7md9if1igyy9643mxxm1g0f"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; }; +NHMSAR = derive { name="NHMSAR"; version="1.1"; sha256="1qbgxb684qwcb29x95a48r6bndqwdi1drwzimkhkb2ldm98yga3z"; depends=[caTools glasso lars SIS ucminf]; }; NHPoisson = derive { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; }; NISTnls = derive { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; NISTunits = derive { name="NISTunits"; version="1.0.0"; sha256="156rk3wams52lw3inf55s9v7mi5x29mmb41p8kvryimnzgi904ca"; depends=[]; }; NLP = derive { name="NLP"; version="0.1-7"; sha256="1r7m6mq7i6xcf2qxzwvwx129fq89gx6f8kxqn76iw5a5nfarq87w"; depends=[]; }; -NLPutils = derive { name="NLPutils"; version="0.0-2"; sha256="1ny1q4b4pd1pl6d3lgv9zfkrw5wjd6pvhwlahj82fr1z3nq46bwb"; depends=[NLP SnowballC qdap]; }; +NLPutils = derive { name="NLPutils"; version="0.0-2"; sha256="1ny1q4b4pd1pl6d3lgv9zfkrw5wjd6pvhwlahj82fr1z3nq46bwb"; depends=[NLP qdap SnowballC]; }; NLRoot = derive { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; -NMF = derive { name="NMF"; version="0.20.5"; sha256="1j91vklzi4qjlix5sn9qh86dwx6vxnla2p4ag81apkr441jkvynr"; depends=[pkgmaker registry rngtools cluster stringr digest gridBase colorspace RColorBrewer foreach doParallel ggplot2 reshape2]; }; +NMF = derive { name="NMF"; version="0.20.6"; sha256="0mmh9bz0zjwd8h9jplz4rq3g94npaqj8s4px51vcv47csssd9k6z"; depends=[cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; NMOF = derive { name="NMOF"; version="0.34-2"; sha256="1hqq0gypry614jfc8hcagwkf6xz6z98pb9hzkl9ygykv4rfs5bms"; depends=[]; }; -NNTbiomarker = derive { name="NNTbiomarker"; version="0.28"; sha256="1y9lkn12a7p1qwi10pzzidhjgkzazn6lfflihnc46phf6yzgdrs6"; depends=[shiny xtable stringr]; }; +NNTbiomarker = derive { name="NNTbiomarker"; version="0.28"; sha256="1y9lkn12a7p1qwi10pzzidhjgkzazn6lfflihnc46phf6yzgdrs6"; depends=[shiny stringr xtable]; }; NORMT3 = derive { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; }; NORRRM = derive { name="NORRRM"; version="1.0.0"; sha256="06bdd5m46c8bbgmr1xkqfw72mm38pafxsvwi9p8y7znzyd0i6ag3"; depends=[ggplot2 SDMTools]; }; NORTARA = derive { name="NORTARA"; version="1.0.0"; sha256="1q4dmn5q939d920spmxxw08afacs3pzhr2gzwyqa5kn8xiz4ffg8"; depends=[corpcor Matrix]; }; -NPBayesImpute = derive { name="NPBayesImpute"; version="0.5"; sha256="0ym227hz6g51bfn218k1g377ci66j4i2sx9zmm5n62sg1dzj3xaj"; depends=[Rcpp Rcpp]; }; -NPC = derive { name="NPC"; version="1.0.0"; sha256="0cx1rqbzn1bmizixf86idqyxz29yip8aq55mbi6l7bfnqp1hq105"; depends=[permute dplyr coin matlab]; }; -NPCD = derive { name="NPCD"; version="1.0-8"; sha256="0wpyxcq2s97iy155sz4pihcgwk8wgk56s7cgszbkz2hl6cijjcbb"; depends=[BB R_oo R_methodsS3]; }; +NPBayesImpute = derive { name="NPBayesImpute"; version="0.5"; sha256="0ym227hz6g51bfn218k1g377ci66j4i2sx9zmm5n62sg1dzj3xaj"; depends=[Rcpp]; }; +NPC = derive { name="NPC"; version="1.0.0"; sha256="0cx1rqbzn1bmizixf86idqyxz29yip8aq55mbi6l7bfnqp1hq105"; depends=[coin dplyr matlab permute]; }; +NPCD = derive { name="NPCD"; version="1.0-8"; sha256="0wpyxcq2s97iy155sz4pihcgwk8wgk56s7cgszbkz2hl6cijjcbb"; depends=[BB R_methodsS3 R_oo]; }; NPCirc = derive { name="NPCirc"; version="2.0.1"; sha256="1pyckjvf4vzns9hxnhnk7cm4abllmdj3f142pvjhnilyqwndqgyc"; depends=[circular misc3d movMF plotrix rgl shape]; }; -NPHMC = derive { name="NPHMC"; version="2.2"; sha256="000x9y00gfkaj5lf00a55b9qx15x05yp3g3nmp8slyzsnfv66p5d"; depends=[survival smcure]; }; +NPHMC = derive { name="NPHMC"; version="2.2"; sha256="000x9y00gfkaj5lf00a55b9qx15x05yp3g3nmp8slyzsnfv66p5d"; depends=[smcure survival]; }; NPMLEcmprsk = derive { name="NPMLEcmprsk"; version="2.1"; sha256="1v15ylgflbdr03pgh55fan1l6mymd1d5n6h9jhbcqahjlcsxkwq3"; depends=[]; }; NPMPM = derive { name="NPMPM"; version="1.0"; sha256="14rjj48vfj4wv1na5v181jby016afx4ak1fs0f3g1fif4kbgbdx0"; depends=[]; }; NPMVCP = derive { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPS = derive { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; NPsimex = derive { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; -NSA = derive { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[R_methodsS3 MASS matrixStats R_oo R_utils aroma_core aroma_affymetrix]; }; -NSM3 = derive { name="NSM3"; version="1.3"; sha256="0vmv7r499ig2fq2gwx78jdrflk5i55jy3vgjh87ygwlyhwj9cm8p"; depends=[combinat MASS partitions survival agricolae ash binom BSDA coin epitools fANCOVA gtools Hmisc km_ci metafor nortest np quantreg Rfit SemiPar SuppDists waveslim]; }; +NSA = derive { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; }; +NSM3 = derive { name="NSM3"; version="1.3"; sha256="0vmv7r499ig2fq2gwx78jdrflk5i55jy3vgjh87ygwlyhwj9cm8p"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; NSUM = derive { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; NScluster = derive { name="NScluster"; version="1.0.2"; sha256="1bvr44qx3bzbgsdpj70dfq9azkrsywkbvwvm3lwwgpn0spk8apld"; depends=[]; }; NanoStringNorm = derive { name="NanoStringNorm"; version="1.1.19"; sha256="0nrhsg32f6381snsxivcnznl752y9jmdscrcn1j8xylwmwc0r4hj"; depends=[gdata]; }; NbClust = derive { name="NbClust"; version="3.0"; sha256="1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"; depends=[]; }; NeatMap = derive { name="NeatMap"; version="0.3.6.2"; sha256="186y06zrh87q6vixl2da2d6apvcj1zkk79c95k081zj5awmryr9b"; depends=[ggplot2 rgl]; }; -NestedCohort = derive { name="NestedCohort"; version="1.1-3"; sha256="10hsc6zik8sz2mp6ig3xr6z3bq0c6rlvqkn11pxny17a4n02wapp"; depends=[survival MASS]; }; +NestedCohort = derive { name="NestedCohort"; version="1.1-3"; sha256="10hsc6zik8sz2mp6ig3xr6z3bq0c6rlvqkn11pxny17a4n02wapp"; depends=[MASS survival]; }; NetCluster = derive { name="NetCluster"; version="0.2"; sha256="0aby8kfniw07jap795cwk69z83p45q5rap73zp1qbmkm3qcb31g4"; depends=[sna]; }; NetComp = derive { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetData = derive { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; NetIndices = derive { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; -NetSim = derive { name="NetSim"; version="0.9"; sha256="07h4qwz64k8zj8c2mx23cbnhg4rqrb4nfh20xw98kspz7cisdg6d"; depends=[Rcpp Rcpp]; }; +NetSim = derive { name="NetSim"; version="0.9"; sha256="07h4qwz64k8zj8c2mx23cbnhg4rqrb4nfh20xw98kspz7cisdg6d"; depends=[Rcpp]; }; NeuralNetTools = derive { name="NeuralNetTools"; version="1.3.1"; sha256="0nk2rs1rfv1lp99kfmqfcwgli92pljzrf4dgxp5q3icgpyf88kqv"; depends=[ggplot2 neuralnet nnet reshape2 RSNNS scales]; }; Newdistns = derive { name="Newdistns"; version="2.0"; sha256="1jgv9jl6pvsjgjsbjvmjg8qwjx4gsmp4kd27pbqxldp0qp0q9mjf"; depends=[AdequacyModel]; }; NightDay = derive { name="NightDay"; version="1.0.1"; sha256="0vkpr2jwhgghiiiaiglaj1b9pz25fcsl628c9nsp9zyl67982wz1"; depends=[maps]; }; Nippon = derive { name="Nippon"; version="0.5.3"; sha256="02m591aljlaxn95k7sl8gfsviv4ywqv9mrkjf6g19kfrc9pbgjqg"; depends=[maptools]; }; NlsyLinks = derive { name="NlsyLinks"; version="1.302"; sha256="0m1qvrpdfwql4jdk3nbn80llq83wavimifw630gnazwmkgkcncai"; depends=[lavaan]; }; -NominalLogisticBiplot = derive { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[mirt gmodels MASS]; }; +NominalLogisticBiplot = derive { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; NonpModelCheck = derive { name="NonpModelCheck"; version="1.0"; sha256="0mgbyp651jfqyfavpv12i9kwqf0cpk2mzh9m0b5k4n759710qv8f"; depends=[dr MASS]; }; NormPsy = derive { name="NormPsy"; version="1.0.3"; sha256="0lp6b7hh36ipmsv395xk671f7sczlfz5f9x0h88b2q6zvgbk081v"; depends=[lcmm]; }; -NormalGamma = derive { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[optimx histogram]; }; +NormalGamma = derive { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive { name="NormalLaplace"; version="0.2-0"; sha256="11z568zhb7jw9ghp6wlyf26ijm25crc5pqhzw71qgvva42nsmmwn"; depends=[DistributionUtils GeneralizedHyperbolic]; }; Nozzle_R1 = derive { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; -OAIHarvester = derive { name="OAIHarvester"; version="0.1-7"; sha256="0wcl71y8i4s4fxpb90xg71sj6819kgl3d4gff66dan8i6y8sxmyk"; depends=[XML RCurl]; }; +OAIHarvester = derive { name="OAIHarvester"; version="0.1-7"; sha256="0wcl71y8i4s4fxpb90xg71sj6819kgl3d4gff66dan8i6y8sxmyk"; depends=[RCurl XML]; }; ODB = derive { name="ODB"; version="1.1.1"; sha256="1hha4rkbc2zh3karkqa0vn4v0nmcd7sljcymy1nh28bx1gx2ffgs"; depends=[DBI RJDBC]; }; -ODMconverter = derive { name="ODMconverter"; version="2.1"; sha256="03m15vck01s6jqcpm5fl7mipki4grgywlb9mksr0l8wygmn8zkxs"; depends=[XML xlsx]; }; -OIdata = derive { name="OIdata"; version="1.0"; sha256="078khxrszwnrww2h0ag153bf59fnyhirxy4m56ssgr2gmfahaymf"; depends=[RCurl maps RCurl maps]; }; -OIsurv = derive { name="OIsurv"; version="0.2"; sha256="148mpjj5navc1vrl72y87krn4lf3awnd32z3g4qqaia404w5w7p7"; depends=[survival KMsurv]; }; +ODMconverter = derive { name="ODMconverter"; version="2.1"; sha256="03m15vck01s6jqcpm5fl7mipki4grgywlb9mksr0l8wygmn8zkxs"; depends=[xlsx XML]; }; +OIdata = derive { name="OIdata"; version="1.0"; sha256="078khxrszwnrww2h0ag153bf59fnyhirxy4m56ssgr2gmfahaymf"; depends=[maps RCurl]; }; +OIsurv = derive { name="OIsurv"; version="0.2"; sha256="148mpjj5navc1vrl72y87krn4lf3awnd32z3g4qqaia404w5w7p7"; depends=[KMsurv survival]; }; OLScurve = derive { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; }; -ONETr = derive { name="ONETr"; version="1.0.2"; sha256="1b0djffn4bx6drq5j87s15dwvnjmvraxs52y4dr6micvd9hifa9a"; depends=[XML RCurl]; }; +ONETr = derive { name="ONETr"; version="1.0.2"; sha256="1b0djffn4bx6drq5j87s15dwvnjmvraxs52y4dr6micvd9hifa9a"; depends=[RCurl XML]; }; OOmisc = derive { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; }; -OPDOE = derive { name="OPDOE"; version="1.0-9"; sha256="0pf8rv5wydc8pl4x57g7bk2swjabaxdgijgsigjy5wihfcb48654"; depends=[gmp mvtnorm orthopolynom nlme crossdes polynom]; }; +OPDOE = derive { name="OPDOE"; version="1.0-9"; sha256="0pf8rv5wydc8pl4x57g7bk2swjabaxdgijgsigjy5wihfcb48654"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; OPE = derive { name="OPE"; version="0.7"; sha256="0ld3pr94ii1pmfk99qfwgria6ki2iz2hwmn7pj3cjwprv8jkcjji"; depends=[]; }; OPI = derive { name="OPI"; version="2.1"; sha256="1pzw5b4gwf1q98547cgq7b363fn72ll0zlvcahy56wc1ci5ny3dd"; depends=[]; }; ORCI = derive { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; }; @@ -1284,109 +1313,111 @@ ORCME = derive { name="ORCME"; version="2.0.1"; sha256="0wr4z19alyp2cvlpg4bs8sni ORDER2PARENT = derive { name="ORDER2PARENT"; version="1.0"; sha256="04c80vk6z227w6qsnfls89ig4vqyiiymdarhq1pxa0gpr8j2ssx5"; depends=[Matrix]; }; ORIClust = derive { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; }; ORMDR = derive { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; }; -OUwie = derive { name="OUwie"; version="1.45"; sha256="1g1315g015pcnd7g8k0vngjg7f842nq8ixhmqnj64by4vsafliva"; depends=[ape nloptr numDeriv corpcor lattice phytools phangorn]; }; +OUwie = derive { name="OUwie"; version="1.45"; sha256="1g1315g015pcnd7g8k0vngjg7f842nq8ixhmqnj64by4vsafliva"; depends=[ape corpcor lattice nloptr numDeriv phangorn phytools]; }; Oarray = derive { name="Oarray"; version="1.4-5"; sha256="1w66vqxvqyrp2h6acnbg3xy7cp6j2dgvzmqqk564kvivbn40vyy4"; depends=[]; }; OceanView = derive { name="OceanView"; version="1.0.3"; sha256="0k281r358xg599n3h4avwbhnhgcfdawf36p8k3sxwv29292npkzv"; depends=[plot3D plot3Drgl rgl shape]; }; Ohmage = derive { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; }; OjaNP = derive { name="OjaNP"; version="0.9-8"; sha256="010l75irgj7nl8yq6crp8d00zjgpv9wg2maw99cj0frhqxvqzbfz"; depends=[ICS ICSNP]; }; OligoSpecificitySystem = derive { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; }; -OmicKriging = derive { name="OmicKriging"; version="1.3"; sha256="1fj131684faj75jdipmsvb8s684x72is6zz79hwb5wszklk00ind"; depends=[doParallel ROCR irlba]; }; +OmicKriging = derive { name="OmicKriging"; version="1.3"; sha256="1fj131684faj75jdipmsvb8s684x72is6zz79hwb5wszklk00ind"; depends=[doParallel irlba ROCR]; }; Oncotree = derive { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; OneTwoSamples = derive { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; -OpasnetUtils = derive { name="OpasnetUtils"; version="1.1.0"; sha256="1a7j96pg0v8j527m0w48k8lxwb2ynrqq1y7140bi1ciq0466azx3"; depends=[rjson RCurl reshape2 triangle httpRequest digest xtable ggplot2 rgdal sp]; }; +OpasnetUtils = derive { name="OpasnetUtils"; version="1.2.0"; sha256="1ckagq14w9923a4x7pk9mfzqcfayi00apwd2kvqzgd0s6355r1q7"; depends=[digest ggplot2 httpRequest plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; OpenCL = derive { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; }; OpenMPController = derive { name="OpenMPController"; version="0.1-2"; sha256="1cpsbjmqql0fsjc1xv323pfkhfr9vrcv5g4j3p1qc5zn4z9pq7r6"; depends=[]; }; -OpenRepGrid = derive { name="OpenRepGrid"; version="0.1.9"; sha256="1s40c2yfd4a4khs0ghlbzii94x8cidg851bivanplg2s51j5jrhk"; depends=[pvclust colorspace plyr stringr abind rgl GPArotation psych XML]; }; -OpenStreetMap = derive { name="OpenStreetMap"; version="0.3.1"; sha256="009xiqsbgqb3lba6msyzq7ncripmvpymxynkga8pqc8npv8g7fzb"; depends=[rJava raster rgdal rJava]; }; +OpenMx = derive { name="OpenMx"; version="2.2.4"; sha256="1w72ikysda45zbvwlr297fqqjl3law2r6m3c9n9j5d8r3clfhqyl"; depends=[BH digest MASS RcppEigen StanHeaders]; }; +OpenRepGrid = derive { name="OpenRepGrid"; version="0.1.9"; sha256="1s40c2yfd4a4khs0ghlbzii94x8cidg851bivanplg2s51j5jrhk"; depends=[abind colorspace GPArotation plyr psych pvclust rgl stringr XML]; }; +OpenStreetMap = derive { name="OpenStreetMap"; version="0.3.1"; sha256="009xiqsbgqb3lba6msyzq7ncripmvpymxynkga8pqc8npv8g7fzb"; depends=[raster rgdal rJava]; }; OptHedging = derive { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; -OptInterim = derive { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[mvtnorm clinfun]; }; +OptInterim = derive { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; }; OptimalCutpoints = derive { name="OptimalCutpoints"; version="1.1-3"; sha256="1vrbx62080r9sgk9ipjvdrqvikp4gwidp5gi5j92hspk7cp10amg"; depends=[]; }; OptionPricing = derive { name="OptionPricing"; version="0.1"; sha256="0j98h3fn29xfv7xyp7av459v56chw99pnvmsbqvrv4g77p60f5q2"; depends=[]; }; -OrdFacReg = derive { name="OrdFacReg"; version="1.0.5"; sha256="1if6ghagj2196pc73ankfrcms0snlpibgfca1c6lhj96m1waahg2"; depends=[survival eha MASS]; }; +OrdFacReg = derive { name="OrdFacReg"; version="1.0.5"; sha256="1if6ghagj2196pc73ankfrcms0snlpibgfca1c6lhj96m1waahg2"; depends=[eha MASS survival]; }; OrdLogReg = derive { name="OrdLogReg"; version="1.1"; sha256="18s75pmz1g3yac2rfl41kj8sfflq298qkijnvqlybgxpq98ickxx"; depends=[LogicReg]; }; OrdMonReg = derive { name="OrdMonReg"; version="1.0.3"; sha256="1xca8pvvq79j484l2rmn4nva8ncx8z51g5diljikck231y8qjqaz"; depends=[]; }; -OrdNor = derive { name="OrdNor"; version="1.0"; sha256="1n6c0d4r1w3n016lzk2i5yyvawk9pgmsbzymbbyq7gx8a80iv32h"; depends=[mvtnorm corpcor Matrix GenOrd]; }; -OrdinalLogisticBiplot = derive { name="OrdinalLogisticBiplot"; version="0.4"; sha256="1axn03yrw30r2j9ss5ig9sq857y37vhrr4a7px68jc2az8mng41j"; depends=[mirt MASS NominalLogisticBiplot]; }; +OrdNor = derive { name="OrdNor"; version="1.0"; sha256="1n6c0d4r1w3n016lzk2i5yyvawk9pgmsbzymbbyq7gx8a80iv32h"; depends=[corpcor GenOrd Matrix mvtnorm]; }; +OrdinalLogisticBiplot = derive { name="OrdinalLogisticBiplot"; version="0.4"; sha256="1axn03yrw30r2j9ss5ig9sq857y37vhrr4a7px68jc2az8mng41j"; depends=[MASS mirt NominalLogisticBiplot]; }; OrgMassSpecR = derive { name="OrgMassSpecR"; version="0.4-4"; sha256="046lr0piiy5w5lxjvyw7iqqclkghmc6zqymfypkw374gk73yrm76"; depends=[]; }; -OutbreakTools = derive { name="OutbreakTools"; version="0.1-13"; sha256="0wwb43n0vv3ihpyr1g48nf81ml7vigvlsq316nzav528i1f7jh22"; depends=[ggplot2 network knitr RColorBrewer ape reshape2 sna plyr ggmap scales rjson networkDynamic RCurl]; }; -OutlierDC = derive { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[survival quantreg Formula]; }; -OutlierDM = derive { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[quantreg MatrixModels outliers pcaPP]; }; +OutbreakTools = derive { name="OutbreakTools"; version="0.1-13"; sha256="0wwb43n0vv3ihpyr1g48nf81ml7vigvlsq316nzav528i1f7jh22"; depends=[ape ggmap ggplot2 knitr network networkDynamic plyr RColorBrewer RCurl reshape2 rjson scales sna]; }; +OutlierDC = derive { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; }; +OutlierDM = derive { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; }; OutrankingTools = derive { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; -P2C2M = derive { name="P2C2M"; version="0.6"; sha256="00m4dmvnvbjbxxqi9ai2zd33cwlsb7ghjbswz256w5iab4c0ls02"; depends=[ape apTreeshape ggplot2 rPython stringr]; }; -PAFit = derive { name="PAFit"; version="0.7.2"; sha256="047ajzb9xnhxqa9v5dggznix9rd9z66g0mzanzwqb8ds5f8gm8ls"; depends=[Rcpp Rcpp]; }; +P2C2M = derive { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; +PAFit = derive { name="PAFit"; version="0.7.2"; sha256="047ajzb9xnhxqa9v5dggznix9rd9z66g0mzanzwqb8ds5f8gm8ls"; depends=[Rcpp]; }; PAGI = derive { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; -PAGWAS = derive { name="PAGWAS"; version="1.0"; sha256="1zwq4b0bgsskzvlapffh30ys9y4wlcfwpjqw8m2i9zabib5knx9i"; depends=[lars doMC mnormt]; }; +PAGWAS = derive { name="PAGWAS"; version="1.0"; sha256="1zwq4b0bgsskzvlapffh30ys9y4wlcfwpjqw8m2i9zabib5knx9i"; depends=[doMC lars mnormt]; }; PANDA = derive { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster]; }; PANICr = derive { name="PANICr"; version="0.0.0.5"; sha256="049ga5iiymqczvy51y52yk7yvv9xy0ibr64ly8ciqig84d5f4jjr"; depends=[MCMCpack]; }; PAS = derive { name="PAS"; version="1.2"; sha256="0q5g9j8xb9fl7r8f1w5gk5h83ll5w1r6m2gq9ilw8w8s96pm4xd8"; depends=[glmnet]; }; -PASWR = derive { name="PASWR"; version="1.1"; sha256="1rxymnqvflypc6m62f5vw65l8x1m2yah7r11hhpmzdq2l2sg8fci"; depends=[e1071 MASS lattice]; }; -PASWR2 = derive { name="PASWR2"; version="1.0"; sha256="1bxczrfxj7nlx4r0b23a7sisinb4d5nd3pj68vigbgrhqyggk87x"; depends=[ggplot2 lattice e1071]; }; -PAWL = derive { name="PAWL"; version="0.5"; sha256="1sx4g4qycba2j1fm0bvhz3hk6ghhdc37rz5zi1njqxrpmbnkqg04"; depends=[mvtnorm foreach reshape ggplot2]; }; -PBC = derive { name="PBC"; version="1.2"; sha256="1z08y5sn6i439811c9mq3bs78zqlzzkz0srmv4wld68bywhmwqj4"; depends=[igraph Rcpp copula Rcpp]; }; -PBD = derive { name="PBD"; version="1.0"; sha256="1q8ijjmcwxi8f3wgggpj4y522wmxady7f60frhlvvixhzfn2iml1"; depends=[deSolve ade4 ape DDD]; }; -PBImisc = derive { name="PBImisc"; version="0.999"; sha256="0igwl78wj8w6jzmk5m8y9rf4j72qrcjyhb83kz44is72ddzsyss6"; depends=[MASS lme4 Matrix]; }; +PASWR = derive { name="PASWR"; version="1.1"; sha256="1rxymnqvflypc6m62f5vw65l8x1m2yah7r11hhpmzdq2l2sg8fci"; depends=[e1071 lattice MASS]; }; +PASWR2 = derive { name="PASWR2"; version="1.0"; sha256="1bxczrfxj7nlx4r0b23a7sisinb4d5nd3pj68vigbgrhqyggk87x"; depends=[e1071 ggplot2 lattice]; }; +PAWL = derive { name="PAWL"; version="0.5"; sha256="1sx4g4qycba2j1fm0bvhz3hk6ghhdc37rz5zi1njqxrpmbnkqg04"; depends=[foreach ggplot2 mvtnorm reshape]; }; +PBC = derive { name="PBC"; version="1.2"; sha256="1z08y5sn6i439811c9mq3bs78zqlzzkz0srmv4wld68bywhmwqj4"; depends=[copula igraph Rcpp]; }; +PBD = derive { name="PBD"; version="1.0"; sha256="1q8ijjmcwxi8f3wgggpj4y522wmxady7f60frhlvvixhzfn2iml1"; depends=[ade4 ape DDD deSolve]; }; +PBImisc = derive { name="PBImisc"; version="0.999"; sha256="0igwl78wj8w6jzmk5m8y9rf4j72qrcjyhb83kz44is72ddzsyss6"; depends=[lme4 MASS Matrix]; }; PBSadmb = derive { name="PBSadmb"; version="0.68.104"; sha256="01akimdsp0bkvz3a5d75yyy3ph0mff85n8qsnr59fla5b5cm4qlj"; depends=[PBSmodelling]; }; PBSddesolve = derive { name="PBSddesolve"; version="1.11.29"; sha256="13vprr66hh5d19xambpyw7k7fvqxb8mj5s9ba19ls7xgypw22cmm"; depends=[]; }; PBSmapping = derive { name="PBSmapping"; version="2.69.76"; sha256="1fci7mx5m3jqy92nqfaw5w5yd5rw6f0bk5kya1v0mmvf7j715kar"; depends=[]; }; PBSmodelling = derive { name="PBSmodelling"; version="2.67.266"; sha256="0ych9k20x0m71gkdrpwv5jnx6pfsk45wwsaaamy32cmnhd3y14sq"; depends=[XML]; }; PCAmixdata = derive { name="PCAmixdata"; version="2.2"; sha256="0gbmiy2mhz8lgp0pcjby4ny8a28wlx1xrsa2lknzxn4d0m2csxjn"; depends=[]; }; -PCDSpline = derive { name="PCDSpline"; version="1.0"; sha256="15kmvcwvwlsr1107n7mfajvf9b1kcslnhsdx0drjjhsvq193qrqa"; depends=[nleqslv matrixcalc]; }; -PCGSE = derive { name="PCGSE"; version="0.2"; sha256="19bpnn1b8ihmf52zh9g9pc38130np1ki8l7wf0j5myw2cnw6fna8"; depends=[RMTstat MASS]; }; +PCDSpline = derive { name="PCDSpline"; version="1.0"; sha256="15kmvcwvwlsr1107n7mfajvf9b1kcslnhsdx0drjjhsvq193qrqa"; depends=[matrixcalc nleqslv]; }; +PCGSE = derive { name="PCGSE"; version="0.2"; sha256="19bpnn1b8ihmf52zh9g9pc38130np1ki8l7wf0j5myw2cnw6fna8"; depends=[MASS RMTstat safe]; }; PCICt = derive { name="PCICt"; version="0.5-4"; sha256="1g17hxs00dlnb6p0av6l7j99qy00555f80nk1i1i1x87fszp3axa"; depends=[]; }; PCIT = derive { name="PCIT"; version="1.5-3"; sha256="0gi28i2qd09pkaja4w7abcl7sz43jnk98897vc2905fnk9nks65j"; depends=[]; }; -PCPS = derive { name="PCPS"; version="1.0.2"; sha256="17gjj88zq123nxg4dh2w304sh9c1c4myad2g8x31wn1z7bmawv3y"; depends=[SYNCSA vegan ape picante phylobase plotrix]; }; -PCS = derive { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[statmod]; }; -PCovR = derive { name="PCovR"; version="2.6"; sha256="0b1bbf6namll2afxh61qz4xz4ipzipdnfhbcqlragmyj9pisaf45"; depends=[GPArotation ThreeWay MASS Matrix]; }; -PDQutils = derive { name="PDQutils"; version="0.1.1"; sha256="0klzh7ilgs02i0cvb5j6jd65dxyg2c3yk5rc82wcjn9ixhr8ks9b"; depends=[orthopolynom moments]; }; +PCPS = derive { name="PCPS"; version="1.0.2"; sha256="17gjj88zq123nxg4dh2w304sh9c1c4myad2g8x31wn1z7bmawv3y"; depends=[ape phylobase picante plotrix SYNCSA vegan]; }; +PCS = derive { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; +PCovR = derive { name="PCovR"; version="2.6"; sha256="0b1bbf6namll2afxh61qz4xz4ipzipdnfhbcqlragmyj9pisaf45"; depends=[GPArotation MASS Matrix ThreeWay]; }; +PDQutils = derive { name="PDQutils"; version="0.1.2"; sha256="1782nnw5mag4impfs05rnapjfrzvbiw1mdrvfrq1v0h9zl43afrd"; depends=[moments orthopolynom]; }; PDSCE = derive { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; }; -PEIP = derive { name="PEIP"; version="1.7"; sha256="1bagi1kr8vd3b3r524vrk747bqmd9insny1nxj8bdvdk0a9yr949"; depends=[bvls Matrix RSEIS pracma]; }; +PEIP = derive { name="PEIP"; version="2.0-1"; sha256="0zfvp3ngc4320sh6r6y746zxigr2wqgaqasnlkv3hxhzpzxq08lj"; depends=[bvls Matrix pracma RSEIS]; }; PEMM = derive { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; }; PERregress = derive { name="PERregress"; version="1.0-8"; sha256="1rhridhfgvrz14h61psfyr5ll13fvxj4b9fwrnlnc6lyqi01wjlc"; depends=[]; }; PET = derive { name="PET"; version="0.4.9"; sha256="1ijg6mfh3xrc1gjh6a4nq64psk9yh16yc8nfp7c9837xbjigqq7f"; depends=[adimpro]; }; -PF = derive { name="PF"; version="9.5"; sha256="1y99brdabj78s5kxyv0136s40kaaj3zya9lk4qd0kqk83z2gdawp"; depends=[xtable RColorBrewer gdata]; }; +PF = derive { name="PF"; version="9.5"; sha256="1y99brdabj78s5kxyv0136s40kaaj3zya9lk4qd0kqk83z2gdawp"; depends=[gdata RColorBrewer xtable]; }; PGICA = derive { name="PGICA"; version="1.0"; sha256="0qxa5hw2s3mndjvk8lb82pcbyj1kbdclx4j4xa8jq0lcj180abi9"; depends=[fastICA]; }; PGM2 = derive { name="PGM2"; version="1.0"; sha256="18azh6k271p9dvc23q402pv7wrilr1yk02vqqy6qjppnvq6jxahg"; depends=[]; }; PGRdup = derive { name="PGRdup"; version="0.2"; sha256="12vxdw4093xmmpcl6ars7h03f1a21gjl5p29r5d19hp68h4hchi1"; depends=[data_table igraph stringdist stringi]; }; PHENIX = derive { name="PHENIX"; version="1.2"; sha256="0fnrx2xf6q9ng9pwfxbbbzvcf6kqj12byd81x0q0vfl85h1xddws"; depends=[ppcor SuppDists]; }; PHYLOGR = derive { name="PHYLOGR"; version="1.0.8"; sha256="17lmjfbwf8j68zzzhdvppyjacdsmy4zmcfj0pcjsw5j6m361hvh6"; depends=[]; }; PHeval = derive { name="PHeval"; version="0.5.2"; sha256="1q0cyq7b8d42jgiw7ra9vjdjw1zcxpyg6wgb3zgygkmd744ifggp"; depends=[survival]; }; -PIGE = derive { name="PIGE"; version="0.9"; sha256="1x8ml25mm69dvlszm9p2ycph92nxcsgd52ydj7ha0dwrrpcv2law"; depends=[snowfall ARTP xtable survival]; }; +PIGE = derive { name="PIGE"; version="0.9"; sha256="1x8ml25mm69dvlszm9p2ycph92nxcsgd52ydj7ha0dwrrpcv2law"; depends=[ARTP snowfall survival xtable]; }; PIGShift = derive { name="PIGShift"; version="1.0.0"; sha256="15cgpi7j5cs4aqdq5cy7535x8ar916d9hd109kc01njrwxp1xr96"; depends=[ape mvtnorm]; }; PIPS = derive { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive { name="PK"; version="1.3-2"; sha256="0162ri9wlm9inryljal48av8yxb326na94kckkigsrklfxb3wkp2"; depends=[]; }; PKI = derive { name="PKI"; version="0.1-1"; sha256="1m4q43yq8ddig15k0j9yg9hq4yz3yplqp68zl3p9g2shkam60p6w"; depends=[base64enc]; }; PKPDmodels = derive { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; -PKfit = derive { name="PKfit"; version="1.2.5"; sha256="0kym2dwb4f53xmf8dq94jz0zmpaiv8pl956j1bs3h9nhhzlaj83y"; depends=[deSolve optimx minpack_lm]; }; -PKgraph = derive { name="PKgraph"; version="1.7"; sha256="0g36cdv5cblqx69j48irxjc5nlw2cl3p714mlsblnd3362z1brwn"; depends=[RGtk2 gWidgetsRGtk2 cairoDevice lattice rggobi ggplot2 proto RGtk2 gWidgetsRGtk2]; }; -PKreport = derive { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[lattice ggplot2]; }; +PKfit = derive { name="PKfit"; version="1.2.5"; sha256="0kym2dwb4f53xmf8dq94jz0zmpaiv8pl956j1bs3h9nhhzlaj83y"; depends=[deSolve minpack_lm optimx]; }; +PKgraph = derive { name="PKgraph"; version="1.7"; sha256="0g36cdv5cblqx69j48irxjc5nlw2cl3p714mlsblnd3362z1brwn"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 lattice proto rggobi RGtk2]; }; +PKreport = derive { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; PLIS = derive { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; }; PLRModels = derive { name="PLRModels"; version="1.1"; sha256="0dwnzfw7a1cxz9s00kxf19jmjsc8cy6cc9q2mjqf8z7690wrg7hb"; depends=[]; }; PLSbiplot1 = derive { name="PLSbiplot1"; version="0.1"; sha256="1l8d1k913ic0qwxvrrd447p5ni3mzc6v9lv45b7vqrpzkxdci6gy"; depends=[]; }; PLordprob = derive { name="PLordprob"; version="1.0"; sha256="156lvz6vfm68hm32l5nlhq15hfacdla627d6lf8l4g34lwzdh8k8"; depends=[mnormt]; }; -PMA = derive { name="PMA"; version="1.0.9"; sha256="11qwgw4sgzl3xhrm468bsza83h3mfn89157nfwnrassl7qr42xkq"; depends=[plyr]; }; +PMA = derive { name="PMA"; version="1.0.9"; sha256="11qwgw4sgzl3xhrm468bsza83h3mfn89157nfwnrassl7qr42xkq"; depends=[impute plyr]; }; PMCMR = derive { name="PMCMR"; version="1.1"; sha256="0f3882rjyxlcr183qa9y22bxh8nqp307v065aiy61ii0kizj9f70"; depends=[]; }; -PP = derive { name="PP"; version="0.5.3"; sha256="17y1v2536n7ap0kvllwkmndmdjf4wgwl171c053ph45krv37mscf"; depends=[Rcpp Rcpp]; }; +PP = derive { name="PP"; version="0.5.3"; sha256="17y1v2536n7ap0kvllwkmndmdjf4wgwl171c053ph45krv37mscf"; depends=[Rcpp]; }; PPtree = derive { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; -PPtreeViz = derive { name="PPtreeViz"; version="1.0.1"; sha256="0010ixyxgal7q5vwpsslvw6p6bb8qkhbysh41rf0ymdwn37p085p"; depends=[gridExtra ggplot2 Rcpp reshape2 Rcpp RcppArmadillo]; }; -PRISMA = derive { name="PRISMA"; version="0.2-5"; sha256="06z4z1rbsk5a8kpbs6ymm0m02i8dwbmv783c3l2pn4q3pf6ncmd5"; depends=[Matrix gplots ggplot2]; }; -PROFANCY = derive { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[Matrix lattice igraph]; }; +PPtreeViz = derive { name="PPtreeViz"; version="1.0.3"; sha256="0m0nw6kh8ybgdih2d10b8q8q0wknrbppad8nq8jmq85sm0xrrysj"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo reshape2]; }; +PRISMA = derive { name="PRISMA"; version="0.2-5"; sha256="06z4z1rbsk5a8kpbs6ymm0m02i8dwbmv783c3l2pn4q3pf6ncmd5"; depends=[ggplot2 gplots Matrix]; }; +PROFANCY = derive { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[igraph lattice Matrix]; }; PROTOLIDAR = derive { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; PRROC = derive { name="PRROC"; version="1.1"; sha256="1v35z9inzb6x42fil8z7kfcrnfif93cj8974mfbqhhx0f9vi476a"; depends=[]; }; -PReMiuM = derive { name="PReMiuM"; version="3.1.0"; sha256="0k8fffsbbdknmv1vshb72mdh7qfdqkrrh41s0ld64ziwnmp3gz23"; depends=[Rcpp ggplot2 cluster plotrix gamlss_dist Rcpp RcppEigen BH]; }; -PResiduals = derive { name="PResiduals"; version="0.2-1"; sha256="0my5slprmswazsxgjvpw8hjr41aqxm6j1s2dga65fvpfv5qimsw6"; depends=[MASS Formula rms sandwich actuar]; }; -PSAboot = derive { name="PSAboot"; version="1.1"; sha256="176sbjr906xk2ycl8653k7nch2h7ryxfisdy178k51f55qpvv4h9"; depends=[ggplot2 PSAgraphics Matching MatchIt modeltools party psych reshape2 rpart TriMatch]; }; +PReMiuM = derive { name="PReMiuM"; version="3.1.1"; sha256="10xrgqq6vii5xcxcf6jqbhzmkiy88ssxjvn2pnfx5a9xj037ymqb"; depends=[BH cluster gamlss_dist ggplot2 plotrix Rcpp RcppEigen]; }; +PResiduals = derive { name="PResiduals"; version="0.2-1"; sha256="0my5slprmswazsxgjvpw8hjr41aqxm6j1s2dga65fvpfv5qimsw6"; depends=[actuar Formula MASS rms sandwich]; }; +PSAboot = derive { name="PSAboot"; version="1.1"; sha256="176sbjr906xk2ycl8653k7nch2h7ryxfisdy178k51f55qpvv4h9"; depends=[ggplot2 Matching MatchIt modeltools party PSAgraphics psych reshape2 rpart TriMatch]; }; PSAgraphics = derive { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; -PSCBS = derive { name="PSCBS"; version="0.44.0"; sha256="1bpvqn2p8pw57dpwk1mr51rsiqirk5sywrycqwbazvjr7hkiqa3d"; depends=[R_methodsS3 R_oo R_utils R_cache matrixStats]; }; -PSM = derive { name="PSM"; version="0.8-10"; sha256="1s60fr85xn3ynpvsbc3nw7vgz6h6jxy3yii1w6jpkw3iwl4bgn84"; depends=[MASS numDeriv deSolve ucminf]; }; -PST = derive { name="PST"; version="0.86"; sha256="0m6v7j36v47zdqqd3lf05w6pk0f3wfs1kix1qfvy2gj8n41jjmxf"; depends=[TraMineR RColorBrewer]; }; +PSCBS = derive { name="PSCBS"; version="0.44.0"; sha256="1bpvqn2p8pw57dpwk1mr51rsiqirk5sywrycqwbazvjr7hkiqa3d"; depends=[DNAcopy matrixStats R_cache R_methodsS3 R_oo R_utils]; }; +PSM = derive { name="PSM"; version="0.8-10"; sha256="1s60fr85xn3ynpvsbc3nw7vgz6h6jxy3yii1w6jpkw3iwl4bgn84"; depends=[deSolve MASS numDeriv ucminf]; }; +PST = derive { name="PST"; version="0.86"; sha256="0m6v7j36v47zdqqd3lf05w6pk0f3wfs1kix1qfvy2gj8n41jjmxf"; depends=[RColorBrewer TraMineR]; }; PTAk = derive { name="PTAk"; version="1.2-9"; sha256="1wbjak8dp53601z39kkpa4ysm264x32371rbgbzmyzx89ap2c0cq"; depends=[tensor]; }; PTE = derive { name="PTE"; version="1.0"; sha256="10if2hh69yysi2y82m7is74hmzw2xpxijgb8bhy1d4g9n9lqidfs"; depends=[doParallel]; }; -PVAClone = derive { name="PVAClone"; version="0.1-2"; sha256="0afl2il5wdcwzpyhjkgq8iz16q1086c3ndr4cjlyspgbss9h5l24"; depends=[dcmle dclone]; }; +PVAClone = derive { name="PVAClone"; version="0.1-2"; sha256="0afl2il5wdcwzpyhjkgq8iz16q1086c3ndr4cjlyspgbss9h5l24"; depends=[dclone dcmle]; }; PVR = derive { name="PVR"; version="0.2.1"; sha256="1p87pj9g0qlc8ja6xdj2amny9pbkaqb34x2y9nkl1nj1pkwjq2s5"; depends=[ape splancs]; }; -PairViz = derive { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[TSP gtools]; }; -PairedData = derive { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[MASS gld mvtnorm lattice ggplot2]; }; +Pade = derive { name="Pade"; version="0.1-2"; sha256="144wzwh5wy9hmxd4ng6k601ppvdbqn6hrx210kj266dlapwyg8l2"; depends=[]; }; +PairViz = derive { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; +PairedData = derive { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; Paneldata = derive { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; -ParDNAcopy = derive { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[]; }; +ParDNAcopy = derive { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; ParallelForest = derive { name="ParallelForest"; version="1.1.0"; sha256="1xa9lfgrvzv7bvv1aaabcfk4372p8x5gxgj463h5ggf9x177lj5j"; depends=[]; }; ParamHelpers = derive { name="ParamHelpers"; version="1.5"; sha256="1ywsc96gc252i6girr2ph674wfrzjfk96l2w8512rqy9bgimr0lr"; depends=[BBmisc checkmate]; }; ParentOffspring = derive { name="ParentOffspring"; version="1.0"; sha256="117g8h0k65f2cjffigl8n4x37y41rr2kz33qn2awyi876nd3mh93"; depends=[]; }; @@ -1395,15 +1426,15 @@ PatternClass = derive { name="PatternClass"; version="1.5"; sha256="1paw39xm2rqj Peaks = derive { name="Peaks"; version="0.2"; sha256="0a173p5cdm1jnm7bwsvjpxh4dccy593g02c4qjwky1cgzy5rvin2"; depends=[]; }; PearsonDS = derive { name="PearsonDS"; version="0.97"; sha256="0bsdj4zir12zkv8yhq1z6dqjzhkb9l0f88jrr4iyclns1pcqvrvi"; depends=[]; }; PearsonICA = derive { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; }; -PedCNV = derive { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[Rcpp RcppArmadillo ggplot2 Rcpp RcppArmadillo]; }; -PepPrep = derive { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[stringr]; }; -Peptides = derive { name="Peptides"; version="1.0.4"; sha256="0qpppbdsz7c3dw6l5m3sxggma4xxdx0vflwlxpa0d7wynqpsn3wn"; depends=[]; }; -PerFit = derive { name="PerFit"; version="1.3.1"; sha256="0zmhafr5fk3z66cp46gasgcxcza2q02821sg8zcs0vk5k80md9a7"; depends=[ltm mirt fda Hmisc irtoys MASS Matrix]; }; -PerMallows = derive { name="PerMallows"; version="1.8"; sha256="1p0rnphhjc0rr1zpbff71mk75lnyph994k4p5whwn2fyfzi1pn0f"; depends=[Rcpp Rcpp]; }; -PerfMeas = derive { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[]; }; +PedCNV = derive { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; +PepPrep = derive { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[biomaRt stringr]; }; +Peptides = derive { name="Peptides"; version="1.1.0"; sha256="0nfldckrb9cvxnzqkhqr06d8a5nna5b900439x49r8njcwr4xpcg"; depends=[]; }; +PerFit = derive { name="PerFit"; version="1.3.1"; sha256="0zmhafr5fk3z66cp46gasgcxcza2q02821sg8zcs0vk5k80md9a7"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; +PerMallows = derive { name="PerMallows"; version="1.8"; sha256="1p0rnphhjc0rr1zpbff71mk75lnyph994k4p5whwn2fyfzi1pn0f"; depends=[Rcpp]; }; +PerfMeas = derive { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive { name="PerformanceAnalytics"; version="1.4.3541"; sha256="1czchsccsbdfjw743j6rm101q2q01pggyl8zmlva213pwm86zb3v"; depends=[xts zoo]; }; PermAlgo = derive { name="PermAlgo"; version="1.1"; sha256="16fhdgr4nza9yknsbwiv8pgljfwp8hhva0crs4dbfd0w4j97n5fp"; depends=[]; }; -PhViD = derive { name="PhViD"; version="1.0.6"; sha256="04vh3892fwb8pn2wmsw5449al80z5sm6avi6b67shky942dasl17"; depends=[MCMCpack]; }; +PhViD = derive { name="PhViD"; version="1.0.6"; sha256="04vh3892fwb8pn2wmsw5449al80z5sm6avi6b67shky942dasl17"; depends=[LBE MCMCpack]; }; PharmPow = derive { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; PhaseType = derive { name="PhaseType"; version="0.1.3"; sha256="092dqyqfaxj8qpwxcjb5cayhnq597rfjz1xb93ps4nrczycqs0l6"; depends=[coda ggplot2 reshape]; }; PhyActBedRest = derive { name="PhyActBedRest"; version="1.0"; sha256="0fpg17fwap12da7xka8pnd1wk6rbmw3zl099588g2r05wq3425sx"; depends=[]; }; @@ -1416,153 +1447,157 @@ PogromcyDanych = derive { name="PogromcyDanych"; version="1.5"; sha256="1m6sycca PoiClaClu = derive { name="PoiClaClu"; version="1.0.2"; sha256="1j593sc344h9iy7if1ppihx2qd73dv32d77d8ckac43i7b2lig24"; depends=[]; }; PoisBinNonNor = derive { name="PoisBinNonNor"; version="1.0"; sha256="0a2v5iwrglg4r6zj5qbbg66638kcf45mxw2gs3qv2zpnfkabadnq"; depends=[BB corpcor Matrix mvtnorm]; }; PoisBinOrd = derive { name="PoisBinOrd"; version="1.1"; sha256="151qqxd2rgh6jxzpclxxa51apiif77j122r2w23bdijkb85sqy9z"; depends=[corpcor GenOrd Matrix mvtnorm]; }; +PoisBinOrdNonNor = derive { name="PoisBinOrdNonNor"; version="1.0"; sha256="1x41mwvdria48cjr3dyq4d0l8v8kp3v9aayfl6jfxy6dhjwdg4vz"; depends=[BB corpcor GenOrd MASS Matrix]; }; +PoisBinOrdNor = derive { name="PoisBinOrdNor"; version="1.0"; sha256="0big81yvbz9qyw4h6h1ak2wzvn56g1d1809m7lnmd2kx780i2hsf"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; PoisNonNor = derive { name="PoisNonNor"; version="1.0"; sha256="1i00knyv5m6p9rllkc440cg2agzs36am5b5w9n90506nq36xp8qm"; depends=[BB corpcor MASS Matrix]; }; -PoisNor = derive { name="PoisNor"; version="1.0"; sha256="147ma6qg6nwxzp022jm5mpijhg3jz489qclr9g2mli5mhgm31f8j"; depends=[mvtnorm corpcor Matrix]; }; +PoisNor = derive { name="PoisNor"; version="1.0"; sha256="147ma6qg6nwxzp022jm5mpijhg3jz489qclr9g2mli5mhgm31f8j"; depends=[corpcor Matrix mvtnorm]; }; PoissonSeq = derive { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; }; PolyPatEx = derive { name="PolyPatEx"; version="0.9"; sha256="1y3jsy095kfp9ycjnj467s1y5abba7jkm83x2cajp5g2jdgp7cf6"; depends=[gtools]; }; PolynomF = derive { name="PolynomF"; version="0.94"; sha256="006ds50ivq91v2jyhgpm5rfaipxbzsnljrki6fjplcw07g0frz71"; depends=[]; }; Pomic = derive { name="Pomic"; version="1.0.2"; sha256="1i3zsz7gc4n4vid3yi3srrv04qk1678wqyyw303pfibiyfd4m80q"; depends=[]; }; -PopED = derive { name="PopED"; version="0.2.0"; sha256="00qbwabzjb4ns9y9a4gg73zxpx02xcycbm19bdk9z1mv06fkg9dj"; depends=[ggplot2 MASS mvtnorm nlme dplyr codetools]; }; +PopED = derive { name="PopED"; version="0.2.0"; sha256="00qbwabzjb4ns9y9a4gg73zxpx02xcycbm19bdk9z1mv06fkg9dj"; depends=[codetools dplyr ggplot2 MASS mvtnorm nlme]; }; PopGenKit = derive { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; -PopGenReport = derive { name="PopGenReport"; version="2.1"; sha256="040h7cvnh1xqlbsyg1lkfiz88421myr47r63v466bxidwb17bqg2"; depends=[knitr adegenet raster lattice RgoogleMaps gap calibrate xtable plyr dismo reshape ggplot2 R_utils ade4 pegas genetics rgdal gdistance vegan sp mmod GGally]; }; +PopGenReport = derive { name="PopGenReport"; version="2.1"; sha256="040h7cvnh1xqlbsyg1lkfiz88421myr47r63v466bxidwb17bqg2"; depends=[ade4 adegenet calibrate dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; PopGenome = derive { name="PopGenome"; version="2.1.6"; sha256="1wk5k5f80l7k6haiaikhgaqn67q5n7gm632i3yz3frj1ph7bwjb7"; depends=[ff]; }; PopVar = derive { name="PopVar"; version="1.1"; sha256="1125yynxdg13r84wzbm2h50yqhw1if0zrkaqlcjvmavymmx0vln2"; depends=[BGLR qtl rrBLUP]; }; PortRisk = derive { name="PortRisk"; version="1.0"; sha256="0vyzvi56lmdlhxpbxcxcfqa8271jv2l45w7x1kzzwl6q0wm4bjln"; depends=[zoo]; }; -PortfolioAnalytics = derive { name="PortfolioAnalytics"; version="1.0.3636"; sha256="0xva3ff8lz05f1jvx8hgn8rpgr658fjhf3xyh9ga1r7dii13ld50"; depends=[zoo xts foreach PerformanceAnalytics]; }; +PortfolioAnalytics = derive { name="PortfolioAnalytics"; version="1.0.3636"; sha256="0xva3ff8lz05f1jvx8hgn8rpgr658fjhf3xyh9ga1r7dii13ld50"; depends=[foreach PerformanceAnalytics xts zoo]; }; PottsUtils = derive { name="PottsUtils"; version="0.3-2"; sha256="05ds0a7jq63zxr3jh66a0df0idzhis76qv6inydsjk2majadj3zv"; depends=[miscF]; }; -PoweR = derive { name="PoweR"; version="1.0.4"; sha256="00y0dvrsbvz8mr8mdw7fk17s5dfgm0f641qg96039y6g3hk2rn77"; depends=[Rcpp Rcpp RcppArmadillo]; }; +PoweR = derive { name="PoweR"; version="1.0.4"; sha256="00y0dvrsbvz8mr8mdw7fk17s5dfgm0f641qg96039y6g3hk2rn77"; depends=[Rcpp RcppArmadillo]; }; Power2Stage = derive { name="Power2Stage"; version="0.3-1"; sha256="0a5llzbhl6s71bh21ka2x50pjissl9gg7f5sskailzcmi60yz2zk"; depends=[PowerTOST]; }; -PowerTOST = derive { name="PowerTOST"; version="1.2-06"; sha256="1amzc0229cwydvnbw59aah52krswdx4k20n6i23vqimmxb26kc64"; depends=[mvtnorm]; }; -PracTools = derive { name="PracTools"; version="0.1"; sha256="0d8m326p41xqr4ndizp5x6qq5h55wgc7yinb6jsxi4xhfd2kiwq5"; depends=[]; }; -PredictABEL = derive { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[Hmisc ROCR epitools PBSmodelling]; }; +PowerTOST = derive { name="PowerTOST"; version="1.2-07"; sha256="0d8nbha0jwkz4phiddpfm32kf8hjrkck05y3w60f40110j9f8yy7"; depends=[mvtnorm]; }; +PracTools = derive { name="PracTools"; version="0.2"; sha256="1njnm0rk2z9p3p8wsj881mddqhpayh56gyyis4cwb5b6pc344s9p"; depends=[]; }; +PredictABEL = derive { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; }; PredictiveRegression = derive { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; PresenceAbsence = derive { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; -PrevMap = derive { name="PrevMap"; version="1.1.4"; sha256="1m5a71s6j6x4kmqij1v7wikblk0a0l9lbskrj6q2znwj0hnbk1wy"; depends=[geoR maxLik raster pdist splancs]; }; +PrevMap = derive { name="PrevMap"; version="1.1.5"; sha256="0bzk09ygz4i3v8s39p0n157wrylp38h5xz32f18py8gr776x311n"; depends=[geoR maxLik pdist raster splancs]; }; PrivateLR = derive { name="PrivateLR"; version="1.2-21"; sha256="1jwq8f0dnngj8sfbmcmxy34nkkq6yjw0mq3w1f8rasz67v3bwzp3"; depends=[]; }; ProDenICA = derive { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; -ProbForecastGOP = derive { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[RandomFields fields]; }; +ProbForecastGOP = derive { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; }; ProfessR = derive { name="ProfessR"; version="2.3"; sha256="1y88as4xjvdm2v2ms5l7c6ziq7sll6qkrpgzdd4xnbcjx7c0g9w8"; depends=[RPMG]; }; -ProfileLikelihood = derive { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[nlme MASS]; }; -ProgGUIinR = derive { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 svMisc MASS]; }; +ProfileLikelihood = derive { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; +ProgGUIinR = derive { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; }; ProjectTemplate = derive { name="ProjectTemplate"; version="0.6"; sha256="0ijsy49gghnki5l63vg5l2awy57kbxbih618j5i5lxs44g15sa5v"; depends=[]; }; PropCIs = derive { name="PropCIs"; version="0.2-5"; sha256="0wnc5h4390w4rglr7gjh6827f5r7gdhajx1iwp5fggdlm808hgq7"; depends=[]; }; -PropClust = derive { name="PropClust"; version="1.4-2"; sha256="13ac895i7ljayyqcjjmwvwar6wf1j0qssazcb5nlz8rw155qwavs"; depends=[flashClust dynamicTreeCut]; }; +PropClust = derive { name="PropClust"; version="1.4-2"; sha256="13ac895i7ljayyqcjjmwvwar6wf1j0qssazcb5nlz8rw155qwavs"; depends=[dynamicTreeCut flashClust]; }; PropScrRand = derive { name="PropScrRand"; version="1.1"; sha256="0cj62dzg4zm8d1g8h7qmviiwm93cwplppbi0p674fmmf1wy84v9s"; depends=[]; }; -PsumtSim = derive { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[EffectsRelBaseline boot]; }; +PsumtSim = derive { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; }; PtProcess = derive { name="PtProcess"; version="3.3-9"; sha256="1pgxi6085l6wwcn354rm8zkrm7nvjmyad6627fh5561y9ksws08k"; depends=[]; }; -PubBias = derive { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[rmeta R_utils]; }; -PubMedWordcloud = derive { name="PubMedWordcloud"; version="0.3.2"; sha256="1xn4ygpvj6pm548yj5kjh2l8n59p2caihfpbkykvbkzgf7hq8p00"; depends=[XML stringr RCurl wordcloud tm RColorBrewer]; }; +PubBias = derive { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; }; +PubMedWordcloud = derive { name="PubMedWordcloud"; version="0.3.2"; sha256="1xn4ygpvj6pm548yj5kjh2l8n59p2caihfpbkykvbkzgf7hq8p00"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; PurBayes = derive { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; }; PwrGSD = derive { name="PwrGSD"; version="2.000"; sha256="0qxvws9mfrnqw5s24qhqk6cbffjm13z7awyxdmnilazghpiq1p7s"; depends=[survival]; }; QCA = derive { name="QCA"; version="1.1-4"; sha256="0wg2yfg61bmcxmkxvm9zjrnz4766f176y4gyqvfp5hsp9pp0h2lm"; depends=[lpSolve]; }; QCA3 = derive { name="QCA3"; version="0.0-7"; sha256="0i9i2i633sjnzsywq51r2l7fkbd4ip217hp0vnkj78sfl7zf1270"; depends=[lpSolveAPI]; }; QCAGUI = derive { name="QCAGUI"; version="1.9-6"; sha256="020ngni02j2w2ylhyidimm51d426pym2g1hg7gnpb7aplxx67n6x"; depends=[abind QCA]; }; -QCAfalsePositive = derive { name="QCAfalsePositive"; version="1.0"; sha256="0rv2pfaj5fh8zva47k2r2rwzpnilj48jigaazkw2ibs8zq5f3qwz"; depends=[]; }; -QCAtools = derive { name="QCAtools"; version="0.1"; sha256="1fcssxpyw0kfm6xgihkv4qxqmg628ahfr1bk36b9di9d29w6vgn9"; depends=[stringr QCA ggplot2 directlabels]; }; +QCAfalsePositive = derive { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; +QCAtools = derive { name="QCAtools"; version="0.1"; sha256="1fcssxpyw0kfm6xgihkv4qxqmg628ahfr1bk36b9di9d29w6vgn9"; depends=[directlabels ggplot2 QCA stringr]; }; QCGWAS = derive { name="QCGWAS"; version="1.0-8"; sha256="1wn1kddgfmqv326pihnavbgsbd2yxrlq5s2xgi6kbprssxvj8bk1"; depends=[]; }; -QRM = derive { name="QRM"; version="0.4-10"; sha256="1fkxjqyb9yqki4qwk393ra66wg5dnbr5b5sgypm8wk973crbhcj0"; depends=[gsl Matrix mvtnorm numDeriv timeSeries Rcpp mgcv Rcpp]; }; +QRM = derive { name="QRM"; version="0.4-10"; sha256="1fkxjqyb9yqki4qwk393ra66wg5dnbr5b5sgypm8wk973crbhcj0"; depends=[gsl Matrix mgcv mvtnorm numDeriv Rcpp timeSeries]; }; QSARdata = derive { name="QSARdata"; version="1.3"; sha256="0dhldnh0jzzb4assycc0l14s45ymvha48w04jbnr34lrwgr9krh4"; depends=[]; }; QTLRel = derive { name="QTLRel"; version="0.2-14"; sha256="05x56a8fjr6xk38dphdzh77y520cr6zykjp3qlx27drk9s5z06cs"; depends=[gdata]; }; QUIC = derive { name="QUIC"; version="1.1"; sha256="021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"; depends=[]; }; QZ = derive { name="QZ"; version="0.1-4"; sha256="1k657i1rf6ayavn0lgfvlh8am3kzypgb1jhf2by147gv103izkrz"; depends=[]; }; QoLR = derive { name="QoLR"; version="1.0"; sha256="1ah6x1fcs4l571jvgm0c257cgxhhpkzfhqimwbb9j7xbz3h55lp3"; depends=[survival zoo]; }; -QuACN = derive { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat igraph]; }; -QualInt = derive { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[survival ggplot2]; }; -Quandl = derive { name="Quandl"; version="2.6.0"; sha256="1mz39sj7dxfh9p5kdq7bxlifbg9izqz04l3ilnfchva7qq1ij01q"; depends=[xts httr zoo]; }; +QuACN = derive { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; +QualInt = derive { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; +Quandl = derive { name="Quandl"; version="2.6.0"; sha256="1mz39sj7dxfh9p5kdq7bxlifbg9izqz04l3ilnfchva7qq1ij01q"; depends=[httr xts zoo]; }; QuantPsyc = derive { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; QuantifQuantile = derive { name="QuantifQuantile"; version="2.1"; sha256="1d3dcpri8d98mn2c0nfipp1pdr67a8h35p0y7bdil6il71h4qldm"; depends=[rgl]; }; -QuasiSeq = derive { name="QuasiSeq"; version="1.0-6"; sha256="0hv6fmw8kqdg82nwdiqb9naryw4x42rv9xw1zmahgqyxr9ffnrgr"; depends=[Matrix mgcv]; }; +QuantumClone = derive { name="QuantumClone"; version="0.6.15"; sha256="0fc63bns6vn4i0qi3vpp2ybm5hd4fl6n18biblph37qnwqxm2dvq"; depends=[doSNOW foreach fpc]; }; +QuasiSeq = derive { name="QuasiSeq"; version="1.0-8"; sha256="113pxmvwwn331g5dcv2zwsvvi5jgc1v41f38sw9gms06i8x3a7q6"; depends=[edgeR mgcv pracma]; }; Quor = derive { name="Quor"; version="0.1"; sha256="1ncl4pj472m881fqndcm6jzn4jkwbnzpc639c9vy5mxa4z569i1g"; depends=[combinat]; }; R_cache = derive { name="R.cache"; version="0.10.0"; sha256="0y8q3w9z9cyzsg60x95kkc81ksc2d5vpdaqg5njq5bgjyw7yjqvs"; depends=[R_methodsS3 R_oo R_utils]; }; -R_devices = derive { name="R.devices"; version="2.13.0"; sha256="1ys4sxns2y5cgqb18scclsv99jfkyy3l9mq0jcnh76c48gpzaisp"; depends=[R_methodsS3 R_oo R_utils base64enc]; }; -R_filesets = derive { name="R.filesets"; version="2.7.1"; sha256="0awvjqkk5h8wzbdgn255m3gy3w5dsnlqp4wj7gzqgqm5mwg4jdyh"; depends=[R_oo R_methodsS3 R_utils R_cache digest]; }; +R_devices = derive { name="R.devices"; version="2.13.0"; sha256="1ys4sxns2y5cgqb18scclsv99jfkyy3l9mq0jcnh76c48gpzaisp"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; +R_filesets = derive { name="R.filesets"; version="2.7.2"; sha256="0jlbpvj1ijjknjrb48x26c1ngkv7gl42fmk5g9sqaivm69d76nav"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; R_huge = derive { name="R.huge"; version="0.9.0"; sha256="13p558qalv60pgr24nsm6mi92ryj65rsbqa6pgdwy0snjqx12bgi"; depends=[R_methodsS3 R_oo R_utils]; }; R_matlab = derive { name="R.matlab"; version="3.2.0"; sha256="1c87m6pv62ciqwpmsp8l7rkixcv04s9nkdn4yjbgyqvcslfaw26m"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive { name="R.methodsS3"; version="1.7.0"; sha256="1dg4bbrwr8jcsqisjrrwxs942mrjq72zw8yvl2br4djdm0md8zz5"; depends=[]; }; R_oo = derive { name="R.oo"; version="1.19.0"; sha256="15rm1qb9a212bqazhcpk7m48hcp7jq8rh4yhd9c6zfyvdqszfmsb"; depends=[R_methodsS3]; }; -R_rsp = derive { name="R.rsp"; version="0.20.0"; sha256="06vq9qq5hdz3hqc99q82622mab6ix7jwap20h4za6ap6gnwqs0fv"; depends=[R_methodsS3 R_oo R_utils R_cache]; }; -R_utils = derive { name="R.utils"; version="2.0.2"; sha256="1bqykygqbgx2wwqypvgj9siyiqa77cbchjnqw0qgg1rg8q2ldw65"; depends=[R_oo R_methodsS3]; }; -R0 = derive { name="R0"; version="1.2-5"; sha256="13f0dvxf1gz9j8ih1n8giyhb4s7nrh1r7ncc5smvh06kjgr5b341"; depends=[MASS]; }; +R_rsp = derive { name="R.rsp"; version="0.20.0"; sha256="06vq9qq5hdz3hqc99q82622mab6ix7jwap20h4za6ap6gnwqs0fv"; depends=[R_cache R_methodsS3 R_oo R_utils]; }; +R_utils = derive { name="R.utils"; version="2.1.0"; sha256="03pi6pkcsq65fv7cn4x74cj050dc8x5d4xyg930p6f7flk788xaz"; depends=[R_methodsS3 R_oo]; }; +R0 = derive { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; R1magic = derive { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; }; R2BayesX = derive { name="R2BayesX"; version="1.0-0"; sha256="1p60n14gaqciskzah5haskflpms1g5lh4n57653yysa7fvmfgdhw"; depends=[BayesXsrc colorspace mgcv]; }; R2Cuba = derive { name="R2Cuba"; version="1.0-11"; sha256="1kgcxqn83yskh0dv6vyz66d0z32qy55par36jj987qglpl25zmax"; depends=[]; }; R2G2 = derive { name="R2G2"; version="1.0-2"; sha256="05d5vybvsi4pyr099916nk1l8sqszs9gaj2vhsx1jxxks8981na7"; depends=[]; }; R2GUESS = derive { name="R2GUESS"; version="1.6"; sha256="1lh73zjch2jaspas065mkcsq13v6s323k4wdhvkydmvyhlgvlpcl"; depends=[fields MCMCpack mixOmics mvtnorm snowfall]; }; R2HTML = derive { name="R2HTML"; version="2.3.1"; sha256="01mycvmz4xd1729kkb8nv5cl30v3qy3k4fmrlr2m1112hf5cmp59"; depends=[]; }; -R2MLwiN = derive { name="R2MLwiN"; version="0.8-1"; sha256="0gkp5jvvbf9rppxirs1s7vr5nbfkrlykaph3lv20xq8cc8nz9zzx"; depends=[lattice coda Matrix foreign rbugs digest]; }; -R2OpenBUGS = derive { name="R2OpenBUGS"; version="3.2-3.1"; sha256="1nnyfhpqgx6wd4n039c4d42png80b2xcwalyj08bmq0cgl32cjgk"; depends=[coda boot]; }; -R2STATS = derive { name="R2STATS"; version="0.68-38"; sha256="1v8mvkvs4fjch0dpjidr51jk6ynnw82zhhylyccyrad9f775j2if"; depends=[proto Matrix lattice lme4 cairoDevice gWidgets gWidgetsRGtk2 RGtk2Extras MASS latticeExtra statmod]; }; +R2MLwiN = derive { name="R2MLwiN"; version="0.8-1"; sha256="0gkp5jvvbf9rppxirs1s7vr5nbfkrlykaph3lv20xq8cc8nz9zzx"; depends=[coda digest foreign lattice Matrix rbugs]; }; +R2OpenBUGS = derive { name="R2OpenBUGS"; version="3.2-3.1"; sha256="1nnyfhpqgx6wd4n039c4d42png80b2xcwalyj08bmq0cgl32cjgk"; depends=[boot coda]; }; +R2STATS = derive { name="R2STATS"; version="0.68-38"; sha256="1v8mvkvs4fjch0dpjidr51jk6ynnw82zhhylyccyrad9f775j2if"; depends=[cairoDevice gWidgets gWidgetsRGtk2 lattice latticeExtra lme4 MASS Matrix proto RGtk2Extras statmod]; }; R2SWF = derive { name="R2SWF"; version="0.9"; sha256="0c3lkmm8wgpix3fv7dxql6zpklwbcsv1y30r26yws12fnavw4y1k"; depends=[sysfonts]; }; -R2WinBUGS = derive { name="R2WinBUGS"; version="2.1-19"; sha256="03bvxv46lhhnbfjq3w5ig50icncwn1bdq7lsh6w1szdk90ah2zgh"; depends=[coda boot]; }; +R2WinBUGS = derive { name="R2WinBUGS"; version="2.1-20"; sha256="052frb3qlqfy6zl0qd2a9d4w2s7prfvdb0vn45rns68q03dma1ml"; depends=[boot coda]; }; R2admb = derive { name="R2admb"; version="0.7.13"; sha256="0sjli498pz1vk5wmw65mca08mramwhzlfli2aih15xj7qzvp0nky"; depends=[coda lattice]; }; -R2jags = derive { name="R2jags"; version="0.5-6"; sha256="0zknl9qrypp96qz6rx7bkxg7bslvsnlhrgh749q4q566fz944n1g"; depends=[rjags abind coda R2WinBUGS]; }; -R330 = derive { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[s20x leaps rgl lattice]; }; +R2jags = derive { name="R2jags"; version="0.5-6"; sha256="0zknl9qrypp96qz6rx7bkxg7bslvsnlhrgh749q4q566fz944n1g"; depends=[abind coda R2WinBUGS rjags]; }; +R330 = derive { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; }; R4CDISC = derive { name="R4CDISC"; version="0.3"; sha256="0443mzkhsbrvsl7vawfpabsdqbqr9yjyyhsw1y07yncy55ylc2v5"; depends=[XML]; }; R4CouchDB = derive { name="R4CouchDB"; version="0.7.1"; sha256="08s999m1kfjzabng41d5fpkag7nrdbricnw7m4jvj1ssqfnil2hj"; depends=[bitops RCurl RJSONIO]; }; R4dfp = derive { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; }; R6 = derive { name="R6"; version="2.0.1"; sha256="0ngm3hl0q3aj067q6q0iqh729z8jx3ydvasj1jw9qrr7bzjh1jn5"; depends=[]; }; -RAD = derive { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[mvtnorm MASS]; }; -RADami = derive { name="RADami"; version="1.0-3"; sha256="0rg07dsh2rlldajcj0gq5sgsl1i3qa28bsrmq88xcljg5hnr4iqn"; depends=[ape geiger phangorn]; }; -RAM = derive { name="RAM"; version="1.2.0"; sha256="1xf296a2xqv9nq3m5lswnbfy023s6dp0yv8y0hr8xq0mw9mym3v3"; depends=[vegan ggplot2 gridExtra RColorBrewer gplots plyr reshape2 scales labdsv ggmap permute VennDiagram data_table FD MASS RgoogleMaps ape lattice reshape]; }; +RAD = derive { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; }; +RADami = derive { name="RADami"; version="1.0-3"; sha256="0rg07dsh2rlldajcj0gq5sgsl1i3qa28bsrmq88xcljg5hnr4iqn"; depends=[ape Biostrings geiger phangorn]; }; +RAM = derive { name="RAM"; version="1.2.1"; sha256="11ymhx0nk113cy068s52hjj38y8glv8nh24yljqqvr1fd9fmy64g"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra Hmisc labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; RAMP = derive { name="RAMP"; version="1.0"; sha256="18cz8gvb49j1hic71dzfcl17hz5gjdcabqvq84yr1h7iqkrq95cq"; depends=[]; }; -RAMpath = derive { name="RAMpath"; version="0.3.8"; sha256="1p1l6iirb314n5246kyyz0r3ja4v05xb5a6aq9k26wsb5m42x85k"; depends=[lavaan ellipse]; }; +RAMpath = derive { name="RAMpath"; version="0.3.8"; sha256="1p1l6iirb314n5246kyyz0r3ja4v05xb5a6aq9k26wsb5m42x85k"; depends=[ellipse lavaan]; }; RANN = derive { name="RANN"; version="2.5"; sha256="007cgqg9bybg2zlljbv5m6cmlm3r6i251018rpgjcn0xnm9sjsj7"; depends=[]; }; RANN_L1 = derive { name="RANN.L1"; version="2.5"; sha256="0sjf92hdw9jczvq1wl5syckhvik7wv0k9vrrgw4nnnsabc25v9pf"; depends=[]; }; RAP = derive { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; }; -RAPIDR = derive { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[data_table PropCIs]; }; +RAPIDR = derive { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; RAdwords = derive { name="RAdwords"; version="0.1.4"; sha256="0zqxvspza60sh65k0fr3c51qdxk8mzkrh8fm421lyd6054n6az21"; depends=[RCurl rjson]; }; RApiSerialize = derive { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive { name="RAppArmor"; version="1.0.1"; sha256="06j7ghmzw2rrlk8nsarmpk1ab2gg88qs52zpw37rhqchpyzwwkfb"; depends=[]; }; RArcInfo = derive { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; }; RAtmosphere = derive { name="RAtmosphere"; version="1.1"; sha256="0mk43bq28hlrjwaycsxca458k8xf00q58czgc17d8yx3kz17a5i0"; depends=[]; }; -RBPcurve = derive { name="RBPcurve"; version="1.0-20"; sha256="1fk2zj16xj8n9jnydzd60crdfsigqd6xs2hq572b9r65ldiikv3z"; depends=[mlr BBmisc checkmate shape TeachingDemos]; }; +RBPcurve = derive { name="RBPcurve"; version="1.0-20"; sha256="1fk2zj16xj8n9jnydzd60crdfsigqd6xs2hq572b9r65ldiikv3z"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RCA = derive { name="RCA"; version="1.4.5"; sha256="0s200s28a6gh3dggad52dgqnf0k2jsfrqv1hbg8w2529v4s3dc5i"; depends=[igraph]; }; RCALI = derive { name="RCALI"; version="0.2-15"; sha256="0w9807dyjghqy1rnv2c0k4kdjlwxzg5fk5r3rsqrmzjj4r8x9g9w"; depends=[splancs]; }; RCEIM = derive { name="RCEIM"; version="0.2"; sha256="0l3lfx3zqxf310rhvjkn977xchxzi7cbzij3ks0nqlx55x5ica9w"; depends=[]; }; -RCMIP5 = derive { name="RCMIP5"; version="1.1"; sha256="1aqcwxh2p4z7wn4p224xdiaharbr51rj51aa760rirs5s1ra7f6q"; depends=[abind dplyr reshape2 digest]; }; -RCPmod = derive { name="RCPmod"; version="1.4"; sha256="1psn1w8ws0n96jqvd98l0wl0l46w0691c5vm9aarql2pqnc73lw9"; depends=[numDeriv gtools]; }; +RCMIP5 = derive { name="RCMIP5"; version="1.1"; sha256="1aqcwxh2p4z7wn4p224xdiaharbr51rj51aa760rirs5s1ra7f6q"; depends=[abind digest dplyr reshape2]; }; +RCPmod = derive { name="RCPmod"; version="1.4"; sha256="1psn1w8ws0n96jqvd98l0wl0l46w0691c5vm9aarql2pqnc73lw9"; depends=[gtools numDeriv]; }; RCassandra = derive { name="RCassandra"; version="0.1-3"; sha256="0xa241s81cyw6lfjb522f2mlyrd0gav9yz3z5jab9hpdpgg9ri38"; depends=[]; }; RCircos = derive { name="RCircos"; version="1.1.2"; sha256="0j7ww2djnhpra13vjr6y772sg64ikdmw1z68lpp9i7d0shlc3qx9"; depends=[]; }; RClimMAWGEN = derive { name="RClimMAWGEN"; version="1.1"; sha256="0icy560llfd10mxlq0xmc6lbg6a030za9sygw1rpz8sk5j0lvb84"; depends=[climdex_pcic RMAWGEN]; }; RColorBrewer = derive { name="RColorBrewer"; version="1.1-2"; sha256="1pfcl8z1pnsssfaaz9dvdckyfnnc6rcq56dhislbf571hhg7isgk"; depends=[]; }; RConics = derive { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; -RCryptsy = derive { name="RCryptsy"; version="0.2"; sha256="1sm6l2jbaxia53dqivii5g7pqbczvjk53c2v2vz65qz1qnrmrybj"; depends=[RJSONIO RCurl]; }; +RCryptsy = derive { name="RCryptsy"; version="0.2"; sha256="1sm6l2jbaxia53dqivii5g7pqbczvjk53c2v2vz65qz1qnrmrybj"; depends=[RCurl RJSONIO]; }; RCurl = derive { name="RCurl"; version="1.95-4.6"; sha256="145li081kqa07w3bzb5zaad6jkr3zr0hcpkjwar76ybrvc4jyi4s"; depends=[bitops]; }; RDIDQ = derive { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; -RDML = derive { name="RDML"; version="0.8-4"; sha256="0zrzi81rlxz8hrpz19g7v470fh930n5y6brn6mjq52shn0ap742m"; depends=[R6 assertthat XML plyr dplyr]; }; -RDS = derive { name="RDS"; version="0.7-1"; sha256="1vkrplzak95yqykrxgzjxgvyb4g255rnk6msh1yi5mgrd32f0gdl"; depends=[gridExtra ggplot2 Hmisc igraph reshape2 scales]; }; -RDSTK = derive { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr rjson RCurl]; }; +RDML = derive { name="RDML"; version="0.8-4"; sha256="0zrzi81rlxz8hrpz19g7v470fh930n5y6brn6mjq52shn0ap742m"; depends=[assertthat dplyr plyr R6 XML]; }; +RDS = derive { name="RDS"; version="0.7-2"; sha256="143pb13wg0ms9zaiilb3ylqj6r6bcy4iqbq19j57z33i1q6ll51c"; depends=[ggplot2 gridExtra igraph reshape2 scales]; }; +RDSTK = derive { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; }; RDataCanvas = derive { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; }; RDieHarder = derive { name="RDieHarder"; version="0.1.3"; sha256="0wls7b0qfbi6hsq9xdywi4mdhim5b6mrzhvyrm9dxp9z1k7imz6m"; depends=[]; }; RDota = derive { name="RDota"; version="1.2"; sha256="1r56s4ii37szmdwgbnlw2g9576kjvyc79nvnfrsgr5mys62pbrzs"; depends=[XML]; }; -REBayes = derive { name="REBayes"; version="0.50"; sha256="0p4kv709r0577xq3mdw2vwla1gsjm8b9mnbsbfwm8fx3n3wfrx0p"; depends=[Rmosek Matrix SparseM]; }; +REBayes = derive { name="REBayes"; version="0.50"; sha256="0p4kv709r0577xq3mdw2vwla1gsjm8b9mnbsbfwm8fx3n3wfrx0p"; depends=[Matrix Rmosek SparseM]; }; RECA = derive { name="RECA"; version="1.1"; sha256="1wgcd53yy4xsi7i674n4255qvvv6988r43q7n7pjqrimp04g1qd0"; depends=[]; }; REDCapR = derive { name="REDCapR"; version="0.7-1"; sha256="1r5vvl52z5gpqhq949fzwmsqvwpr74phcapkckczyznlfql4qdh1"; depends=[httr plyr stringr]; }; REEMtree = derive { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; }; -REPPlab = derive { name="REPPlab"; version="0.9.1"; sha256="1yrw03p7rk5dbr23z343kxn7vbac8khcz4c718wq9w6sykhgv8d0"; depends=[rJava lattice]; }; +REPPlab = derive { name="REPPlab"; version="0.9.1"; sha256="1yrw03p7rk5dbr23z343kxn7vbac8khcz4c718wq9w6sykhgv8d0"; depends=[lattice rJava]; }; REQS = derive { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; }; -RESS = derive { name="RESS"; version="1.0"; sha256="0p6zfvakq4c02qp26l8zqcmi95na408rv6j6ibaxbcyf5vq9rhcs"; depends=[]; }; +RESS = derive { name="RESS"; version="1.1"; sha256="1g4g15m29cb6c60ah86si6ibi8sb2j7spqml6lmcflk4rrnyi4pc"; depends=[]; }; REST = derive { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REdaS = derive { name="REdaS"; version="0.9.2"; sha256="0w1b2996b0sdpxklkxylnk18dx8vgssn5avh7pnrvdqa464ci4f8"; depends=[]; }; RFGLS = derive { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive { name="RFLPtools"; version="1.6"; sha256="1hl2crg7jl266zac41xvx151h7kl52346wnlvd8hba64s4s4apay"; depends=[RColorBrewer]; }; -RFOC = derive { name="RFOC"; version="3.3-3"; sha256="101d7nf4zjni5kdk54w3afdaqnjzl7y90zygybkqpd0vi82q602b"; depends=[RPMG GEOmap RSEIS MASS splancs]; }; +RFOC = derive { name="RFOC"; version="3.3-3"; sha256="101d7nf4zjni5kdk54w3afdaqnjzl7y90zygybkqpd0vi82q602b"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; +RFgroove = derive { name="RFgroove"; version="1.0"; sha256="13cf2grp87j7mm0lqf8f65d1pzypjp3b7g09f35x6dfirvc7lkdy"; depends=[fda randomForest wmtsa]; }; RFinanceYJ = derive { name="RFinanceYJ"; version="0.3.1"; sha256="0qhmzsch7c2p0zckjkspsajzh8m10cf75ixjlgd0nj8rm41fngm3"; depends=[XML xts]; }; -RFmarkerDetector = derive { name="RFmarkerDetector"; version="1.0"; sha256="0p8dnqwhsjh1gwxvqpicdbsjs9gczqi5j4av786l9g18f5djsv6m"; depends=[AUCRF randomForest ggplot2 UsingR WilcoxCV ROCR]; }; -RForcecom = derive { name="RForcecom"; version="0.7"; sha256="0rjav2rwanzqgi1yasbm9lj18f0mfxwd8w8x41skf656gfcpi0i4"; depends=[XML RCurl plyr]; }; +RFmarkerDetector = derive { name="RFmarkerDetector"; version="1.0"; sha256="0p8dnqwhsjh1gwxvqpicdbsjs9gczqi5j4av786l9g18f5djsv6m"; depends=[AUCRF ggplot2 randomForest ROCR UsingR WilcoxCV]; }; +RForcecom = derive { name="RForcecom"; version="0.7"; sha256="0rjav2rwanzqgi1yasbm9lj18f0mfxwd8w8x41skf656gfcpi0i4"; depends=[plyr RCurl XML]; }; RFreak = derive { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; }; -RGA = derive { name="RGA"; version="0.2.1"; sha256="14fyd65n75m4xjdp019xdp3sa6h6j3ip6yr42b4nn1cxgkjplbnm"; depends=[httr httpuv RCurl jsonlite shiny]; }; +RGA = derive { name="RGA"; version="0.2.2"; sha256="1n3czw1yl13ws23yv2rhpq9l7wm0lvgm0jidh6j0mb833322jljx"; depends=[curl httpuv httr jsonlite shiny]; }; RGCCA = derive { name="RGCCA"; version="2.0"; sha256="0mcp51z5jkn7yxmspp5cvmmvq0cwh7hj66g7wjmxsi74dwxcinvg"; depends=[MASS]; }; RGENERATE = derive { name="RGENERATE"; version="1.3"; sha256="16gkdwbigdsdvnplqhzs11kk4dhb2rlnf7vj6kbzxw9fb1b7818q"; depends=[RMAWGEN]; }; -RGENERATEPREC = derive { name="RGENERATEPREC"; version="1.0"; sha256="1f6y3i8r6a9cajbj127s0cd13ihbi8scgrsgizza1fjb7fg2g450"; depends=[copula RGENERATE blockmatrix Matrix stringr RMAWGEN]; }; +RGENERATEPREC = derive { name="RGENERATEPREC"; version="1.0"; sha256="1f6y3i8r6a9cajbj127s0cd13ihbi8scgrsgizza1fjb7fg2g450"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; RGIFT = derive { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; RGenetics = derive { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; }; -RGoogleAnalytics = derive { name="RGoogleAnalytics"; version="0.1.1"; sha256="1049fyxl00izw92rm508p90asjp0agmv38b00yfbmasfzsp1r00s"; depends=[lubridate httr]; }; -RGraphics = derive { name="RGraphics"; version="2.0-12"; sha256="03f0rlckfkll3s30avglbf0524laf8n6plxlbmbx1qi1s18hcfai"; depends=[lattice ggplot2]; }; +RGoogleAnalytics = derive { name="RGoogleAnalytics"; version="0.1.1"; sha256="1049fyxl00izw92rm508p90asjp0agmv38b00yfbmasfzsp1r00s"; depends=[httr lubridate]; }; +RGraphics = derive { name="RGraphics"; version="2.0-12"; sha256="03f0rlckfkll3s30avglbf0524laf8n6plxlbmbx1qi1s18hcfai"; depends=[ggplot2 lattice]; }; RGtk2 = derive { name="RGtk2"; version="2.20.31"; sha256="1ilnlmsk9fis61pc5bn9sf7z4b7vc7f0a0zcy77kk4bns6iqjvyp"; depends=[]; }; RGtk2Extras = derive { name="RGtk2Extras"; version="0.6.1"; sha256="19gjz2bk9dix06wrmlnq02yj1ly8pzhvr0riz9b08vbzlsv9gnk2"; depends=[RGtk2]; }; -RH2 = derive { name="RH2"; version="0.2.3"; sha256="1qbxy600fc8k2xl70liggdgg03ga6a8yad001banqzdmh508wcxl"; depends=[chron RJDBC rJava]; }; -RHRV = derive { name="RHRV"; version="4.0"; sha256="16xmmmw8gsqalbqf59xwpkd2bkfwxrdx8bwdn875bizx7mn0bql7"; depends=[tkrplot waveslim nonlinearTseries]; }; +RH2 = derive { name="RH2"; version="0.2.3"; sha256="1qbxy600fc8k2xl70liggdgg03ga6a8yad001banqzdmh508wcxl"; depends=[chron rJava RJDBC]; }; +RHRV = derive { name="RHRV"; version="4.0"; sha256="16xmmmw8gsqalbqf59xwpkd2bkfwxrdx8bwdn875bizx7mn0bql7"; depends=[nonlinearTseries tkrplot waveslim]; }; RHT = derive { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; }; RHive = derive { name="RHive"; version="2.0-0.2"; sha256="0a1saqqwh6zvz264jkkd6c9abxpsg1j4yfivb5h773i76pzhvqc3"; depends=[rJava]; }; RI2by2 = derive { name="RI2by2"; version="1.2"; sha256="0387ncq1nhpz8521nwsjybsdpncm56nrwkz68apgihmrbjlmp6m7"; depends=[gtools]; }; @@ -1572,240 +1607,246 @@ RISmed = derive { name="RISmed"; version="2.1.5"; sha256="03c2b6iqq147kwrpx6wh44 RImageJROI = derive { name="RImageJROI"; version="0.1.1"; sha256="0a4sa60klbpl31qxxvjjbksdhvs3vwm9na1v7014v93fzxy6bjas"; depends=[spatstat]; }; RImpala = derive { name="RImpala"; version="0.1.6"; sha256="03f4cq4bcrydpy78ypir7smj7abrcfynz0zzlgwgc60vh7vl79lz"; depends=[rJava]; }; RInSp = derive { name="RInSp"; version="1.2"; sha256="0zg46qw44wx17ydcz592gl4k9qq08dycmsshxxqkjf92r3g3l6wm"; depends=[]; }; -RInside = derive { name="RInside"; version="0.2.12"; sha256="09dx9md5i4vdgadmqfzcchs5nhkml4nwr8ckgmmqll0y3xph2f3h"; depends=[Rcpp Rcpp]; }; -RItools = derive { name="RItools"; version="0.1-12"; sha256="0zdwj5y355d8jnwmjic3djwn6zy7h1iyl58j9hmnmc3m369cir0s"; depends=[lattice SparseM xtable svd abind]; }; +RInside = derive { name="RInside"; version="0.2.13"; sha256="0cfhljdai9kkw5m01mjaya0s02g4g1cy1g4i0qpjkhgqyihsh7dy"; depends=[Rcpp]; }; +RItools = derive { name="RItools"; version="0.1-12"; sha256="0zdwj5y355d8jnwmjic3djwn6zy7h1iyl58j9hmnmc3m369cir0s"; depends=[abind lattice SparseM svd xtable]; }; RJDBC = derive { name="RJDBC"; version="0.2-5"; sha256="0cdqil9g4w5mfpwq85pdq4vpd662nmw4hr7qkq6510gk4l375ab2"; depends=[DBI rJava]; }; RJSDMX = derive { name="RJSDMX"; version="1.3"; sha256="1z4l6iw404qn3syk2877msywkr8369nic5zzvnx1qj0gj9x2mm2p"; depends=[rJava zoo]; }; RJSONIO = derive { name="RJSONIO"; version="1.3-0"; sha256="1dwgyiy19sixhy6yclqcaaxswbmpq7digyjjxhy1qv0wfsvk94qi"; depends=[]; }; RJaCGH = derive { name="RJaCGH"; version="2.0.3"; sha256="0wz7vhlgzf8smzl7gx01dx070266fnmzw66wpl0im20nxfy8mr0l"; depends=[]; }; -RJafroc = derive { name="RJafroc"; version="0.0.1"; sha256="0zjyr7qz50wvzkais6q9kyf3wp29g15kan73b8wdqrvab0f5rjqs"; depends=[xlsx ggplot2 stringr]; }; -RKEA = derive { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[RKEAjars rJava tm]; }; +RJafroc = derive { name="RJafroc"; version="0.0.1"; sha256="0zjyr7qz50wvzkais6q9kyf3wp29g15kan73b8wdqrvab0f5rjqs"; depends=[ggplot2 stringr xlsx]; }; +RKEA = derive { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive { name="RKEAjars"; version="5.0-1"; sha256="00bva6ksdnmwa0i2zvr36n40xp429c0sqyp20a8n3zsblawiralc"; depends=[rJava]; }; -RLRsim = derive { name="RLRsim"; version="3.0"; sha256="16bqsp15b8ikgix18p63k6sf81d1al4djbb51r08imjs4z9jppg4"; depends=[Rcpp mgcv Rcpp]; }; -RLumShiny = derive { name="RLumShiny"; version="0.1.0"; sha256="0j4w3h1j6dm5q98639am3xfixjdx2xhiiy3qghkb0z8lv5rbvvw5"; depends=[Luminescence shiny digest googleVis RCurl]; }; +RLRsim = derive { name="RLRsim"; version="3.0"; sha256="16bqsp15b8ikgix18p63k6sf81d1al4djbb51r08imjs4z9jppg4"; depends=[mgcv Rcpp]; }; +RLumShiny = derive { name="RLumShiny"; version="0.1.0"; sha256="0j4w3h1j6dm5q98639am3xfixjdx2xhiiy3qghkb0z8lv5rbvvw5"; depends=[digest googleVis Luminescence RCurl shiny]; }; RM2 = derive { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; RMAWGEN = derive { name="RMAWGEN"; version="1.3.0"; sha256="19p8bxcfk802pdn6990ya0bd9ghbvg8vmk3z01x1v76w09j4bv38"; depends=[chron date vars]; }; RMC = derive { name="RMC"; version="0.2"; sha256="1sc4nsjmaw2ajm8bka7r4mf73zxqhnvx23kl4v20pfpy9rhgd0h6"; depends=[]; }; RMKdiscrete = derive { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; }; -RMOA = derive { name="RMOA"; version="1.0"; sha256="01mrl6544wv2jc8b8gk1whs865sbv4id5sywnf1hq3r7g8wgs8lp"; depends=[RMOAjars rJava]; }; +RMOA = derive { name="RMOA"; version="1.0"; sha256="01mrl6544wv2jc8b8gk1whs865sbv4id5sywnf1hq3r7g8wgs8lp"; depends=[rJava RMOAjars]; }; RMOAjars = derive { name="RMOAjars"; version="1.0"; sha256="0k3w37dwyyvfxh7a9l76cyjm27qq1clxppc5h16li2m8x68fvpjq"; depends=[rJava]; }; -RMRAINGEN = derive { name="RMRAINGEN"; version="1.0"; sha256="175kd803a44yblq2jw5mrn2qv4piiy249577lf684bmmajf4ird4"; depends=[copula RGENERATE RMAWGEN blockmatrix Matrix]; }; +RMRAINGEN = derive { name="RMRAINGEN"; version="1.0"; sha256="175kd803a44yblq2jw5mrn2qv4piiy249577lf684bmmajf4ird4"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN]; }; RMTstat = derive { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; RMallow = derive { name="RMallow"; version="1.0"; sha256="0prd5fc98mlxnwjhscmghw62jhq9rj5jk8qf4fnaa2a718yxf9b5"; depends=[combinat]; }; -RMark = derive { name="RMark"; version="2.1.12"; sha256="0b8yzng9c74yxl1a1nkc4knf2a9114mjkis19b1pdnclyxcnx45z"; depends=[snowfall matrixcalc msm coda]; }; -RMediation = derive { name="RMediation"; version="1.1.3"; sha256="07ck74dl1wwb88229fhkh2czlynddff7zvjyhisxk53qmdb0wvmw"; depends=[MASS lavaan e1071]; }; +RMark = derive { name="RMark"; version="2.1.13"; sha256="04wrl4i3d6kwy4masqc17qab24jv8p3kbfcx2z5l11wyf84xaqgx"; depends=[coda matrixcalc msm snowfall]; }; +RMediation = derive { name="RMediation"; version="1.1.3"; sha256="07ck74dl1wwb88229fhkh2czlynddff7zvjyhisxk53qmdb0wvmw"; depends=[e1071 lavaan MASS]; }; RMongo = derive { name="RMongo"; version="0.0.25"; sha256="1anybw64bcipwsjc880ywzj0mxkgcj6q0aszdad6zd4zlbm444pc"; depends=[rJava]; }; RMySQL = derive { name="RMySQL"; version="0.10.3"; sha256="0791pshzr7rjjcnlm9md7gfsqkzizhzr9vwgnk2acc7sw5hikga6"; depends=[DBI]; }; RNCBIEUtilsLibs = derive { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; -RNCEP = derive { name="RNCEP"; version="1.0.7"; sha256="0yvddsdpdrsg2dafmba081q4a34q15d7g2z5zr4qnzqb8wjwh6q2"; depends=[maps RColorBrewer abind fields fossil tgp sp]; }; +RNCEP = derive { name="RNCEP"; version="1.0.7"; sha256="0yvddsdpdrsg2dafmba081q4a34q15d7g2z5zr4qnzqb8wjwh6q2"; depends=[abind fields fossil maps RColorBrewer sp tgp]; }; RND = derive { name="RND"; version="1.1"; sha256="1rbnjkfrsvm68xp90l4awixbvpid9nxnhg6i6fndpdmqwly2fwdp"; depends=[]; }; -RNeXML = derive { name="RNeXML"; version="2.0.2"; sha256="1giqwpcvr3v7na0z25qwps3qlrnffji0frcx694ifdfa89fn0s4d"; depends=[ape XML plyr taxize reshape2 httr uuid]; }; +RNeXML = derive { name="RNeXML"; version="2.0.3"; sha256="02aaacd2vs2iccjabx1bcrimhzr1kpzhkx9l50amwilj8q8ackr0"; depends=[ape httr plyr reshape2 taxize uuid XML]; }; RNetCDF = derive { name="RNetCDF"; version="1.7-3"; sha256="1blpwkmdi7scm876mvk9m23k4kfx83rc6hcy342236rbmxdzahhg"; depends=[]; }; -RNetLogo = derive { name="RNetLogo"; version="1.0-1"; sha256="051yx7l8qbnvb4gn67m00wnl6v0jrmavmp7n7zygjn7p1xi3w22c"; depends=[rJava igraph]; }; -RNiftyReg = derive { name="RNiftyReg"; version="1.1.3"; sha256="1z980rwlq7wg4zjslppzs9d2cxhj7l63sgg8x8g6zgs5ag3pzgi7"; depends=[reportr oro_nifti]; }; -ROAuth = derive { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[RCurl digest]; }; -ROC632 = derive { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[survival penalized survivalROC]; }; +RNetLogo = derive { name="RNetLogo"; version="1.0-1"; sha256="051yx7l8qbnvb4gn67m00wnl6v0jrmavmp7n7zygjn7p1xi3w22c"; depends=[igraph rJava]; }; +RNiftyReg = derive { name="RNiftyReg"; version="1.1.3"; sha256="1z980rwlq7wg4zjslppzs9d2cxhj7l63sgg8x8g6zgs5ag3pzgi7"; depends=[oro_nifti reportr]; }; +ROAuth = derive { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; +ROC632 = derive { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; }; ROCR = derive { name="ROCR"; version="1.0-7"; sha256="1jay8cm7lgq56i967vm5c2hgaxqkphfpip0gn941li3yhh7p3vz7"; depends=[gplots]; }; ROCS = derive { name="ROCS"; version="1.2"; sha256="1liph11p5dwvm1z5vq7ph5pizzqrm6ami94cq6y5kvm2qyv0jfah"; depends=[rgl]; }; -ROCt = derive { name="ROCt"; version="0.8"; sha256="1k0571gq7igg56qxwf9ibk28v763ji0w9183gs6qp95lpbyp5zwr"; depends=[date survival relsurv]; }; +ROCt = derive { name="ROCt"; version="0.8"; sha256="1k0571gq7igg56qxwf9ibk28v763ji0w9183gs6qp95lpbyp5zwr"; depends=[date relsurv survival]; }; ROCwoGS = derive { name="ROCwoGS"; version="1.0"; sha256="029nramxwhzqim315g1vkg1zsszzkic28w6ahwg9n7bk9d08adzk"; depends=[]; }; RODBC = derive { name="RODBC"; version="1.3-11"; sha256="1j6qv7w4klgwzdx9jf6h4l1x1idn3rka70ql37pbnzga1h5dr9yy"; depends=[]; }; RODBCext = derive { name="RODBCext"; version="0.2.3"; sha256="0j0774gpnd72mw3x9qv7shiwrk0s5rk8hf0wjq4iy42wwbvql7l6"; depends=[RODBC]; }; RODM = derive { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; }; ROI = derive { name="ROI"; version="0.1-0"; sha256="01za8cxjf721m2lxnw352k8g32pglmllk50l7b8yhjwc49k8rl66"; depends=[registry slam]; }; -ROI_plugin_glpk = derive { name="ROI.plugin.glpk"; version="0.0-2"; sha256="10p3cq59app3xdv8dvqr24m937a36lzd274mdl2a9r4fwny2rssa"; depends=[ROI Rglpk]; }; +ROI_plugin_glpk = derive { name="ROI.plugin.glpk"; version="0.0-2"; sha256="10p3cq59app3xdv8dvqr24m937a36lzd274mdl2a9r4fwny2rssa"; depends=[Rglpk ROI]; }; ROI_plugin_quadprog = derive { name="ROI.plugin.quadprog"; version="0.0-2"; sha256="0mkjq87rv1xf0bggpqd2r4gabv11spgcds2y94r3vpmh8krf71jf"; depends=[quadprog ROI slam]; }; ROI_plugin_symphony = derive { name="ROI.plugin.symphony"; version="0.0-2"; sha256="1z4cahz0h38jw54p9363ca6i3qq7dwlm3568dr91gvpqf76b05wd"; depends=[ROI Rsymphony slam]; }; ROSE = derive { name="ROSE"; version="0.0-3"; sha256="12b9grh3rgaa07blbnxy8nvy5gvpd45m43bfqb3m4k3d0655jpk2"; depends=[]; }; -RObsDat = derive { name="RObsDat"; version="15.02"; sha256="1fagbmp48rnyln6jh2yzvc414q82q6dvixmia7yqg64lrkzkh302"; depends=[zoo spacetime xts DBI vwr e1071 sp]; }; +RObsDat = derive { name="RObsDat"; version="15.02"; sha256="1fagbmp48rnyln6jh2yzvc414q82q6dvixmia7yqg64lrkzkh302"; depends=[DBI e1071 sp spacetime vwr xts zoo]; }; ROptEst = derive { name="ROptEst"; version="0.9"; sha256="0m5czyqcsz42dzrhm3vwfmn046n57cb7x5sqzf2nad1gqgxzxp1d"; depends=[distr distrEx distrMod RandVar RobAStBase]; }; -ROptEstOld = derive { name="ROptEstOld"; version="0.9.2"; sha256="0blf34xff9pjfy983xm7a27xqkh9173nk64ysas6f0g4h31gh8ax"; depends=[distr distrEx RandVar evd]; }; -ROptRegTS = derive { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[ROptEstOld RandVar distr distrEx]; }; +ROptEstOld = derive { name="ROptEstOld"; version="0.9.2"; sha256="0blf34xff9pjfy983xm7a27xqkh9173nk64ysas6f0g4h31gh8ax"; depends=[distr distrEx evd RandVar]; }; +ROptRegTS = derive { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[distr distrEx RandVar ROptEstOld]; }; ROracle = derive { name="ROracle"; version="1.1-12"; sha256="1ydmckr0wzjgvhhh410l4ih7idbr8140g6v11avh655wffk02q5p"; depends=[DBI]; }; -RPANDA = derive { name="RPANDA"; version="1.0"; sha256="1q8chhmdgn697a4qp4f7prdviar29z0py050748qw7ab326lqp5d"; depends=[ape picante pspline deSolve]; }; +RPANDA = derive { name="RPANDA"; version="1.0"; sha256="1q8chhmdgn697a4qp4f7prdviar29z0py050748qw7ab326lqp5d"; depends=[ape deSolve picante pspline]; }; RPCLR = derive { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; -RPEnsemble = derive { name="RPEnsemble"; version="0.2"; sha256="1kbgpbk7gma0vhl0aybdj7bk2chhbggzh7h1w7snddgdvvj6cz10"; depends=[MASS class]; }; +RPEnsemble = derive { name="RPEnsemble"; version="0.2"; sha256="1kbgpbk7gma0vhl0aybdj7bk2chhbggzh7h1w7snddgdvvj6cz10"; depends=[class MASS]; }; RPMG = derive { name="RPMG"; version="2.1-7"; sha256="1nkmnqrys65vg377mys6qzpbwfh43adgy76c6jfdg336nf8qx2wd"; depends=[]; }; RPMM = derive { name="RPMM"; version="1.20"; sha256="09rwrcd8jz0nii1vx0n3b4daidiq0kp0vf88bvi84y4i06743il7"; depends=[cluster]; }; RPPairwiseDesign = derive { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; RPostgreSQL = derive { name="RPostgreSQL"; version="0.4"; sha256="0gpmbpiaiqvjzyl84l2l8v2jnz3h41v8jl99sp1qvvyrjrickra2"; depends=[DBI]; }; -RProtoBuf = derive { name="RProtoBuf"; version="0.4.2"; sha256="0ph6sdw0gys70sjlfimgvjk19rbj4v6p7wk05nar6wh8mabpvb63"; depends=[Rcpp RCurl Rcpp]; }; -RPublica = derive { name="RPublica"; version="0.1.2"; sha256="1fawjkwfxx3z370132vsjjs3ls316gzxzlxp8b4vzrshx1p7vp3q"; depends=[jsonlite httr RCurl]; }; +RProtoBuf = derive { name="RProtoBuf"; version="0.4.2"; sha256="0ph6sdw0gys70sjlfimgvjk19rbj4v6p7wk05nar6wh8mabpvb63"; depends=[Rcpp RCurl]; }; +RPublica = derive { name="RPublica"; version="0.1.2"; sha256="1fawjkwfxx3z370132vsjjs3ls316gzxzlxp8b4vzrshx1p7vp3q"; depends=[httr jsonlite RCurl]; }; RPushbullet = derive { name="RPushbullet"; version="0.2.0"; sha256="1h9yvw9kw7df0ijwhfc2bi29y61fl9zg3mp4xygx3fyr9mycjm7a"; depends=[RJSONIO]; }; -RQDA = derive { name="RQDA"; version="0.2-7"; sha256="05h2f5sk0a14bhzqng5xp87li24b6n11p5lcxf9xpy7sbmh5ig6g"; depends=[RSQLite gWidgetsRGtk2 RGtk2 DBI igraph gWidgets]; }; -RQuantLib = derive { name="RQuantLib"; version="0.4.0"; sha256="1p2hd7wa5yi5ian2akb70pjr4glfni4dvwgglyg5pqmmm2j45k2d"; depends=[Rcpp Rcpp]; }; +RQDA = derive { name="RQDA"; version="0.2-7"; sha256="05h2f5sk0a14bhzqng5xp87li24b6n11p5lcxf9xpy7sbmh5ig6g"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; +RQuantLib = derive { name="RQuantLib"; version="0.4.0"; sha256="1p2hd7wa5yi5ian2akb70pjr4glfni4dvwgglyg5pqmmm2j45k2d"; depends=[Rcpp]; }; RRF = derive { name="RRF"; version="1.6"; sha256="1gp224mracrz53vnxwfvd7bln18v8x7w130wslhfgcdl0n4f2d28"; depends=[]; }; RRTCS = derive { name="RRTCS"; version="0.0.1"; sha256="05ws5n2ajisdh4gfzmilvkz6jvvbl6fiwkcjzwm8bll2rhl916z4"; depends=[sampling samplingVarEst]; }; RRreg = derive { name="RRreg"; version="0.3.0"; sha256="0pip05wk76h436mvcsddhn2p25ihms3yf1lb23k7ygpx6jx4mdn3"; depends=[doParallel foreach]; }; -RSA = derive { name="RSA"; version="0.9.8"; sha256="1pqblhimhj79ss8js0nf8w24ga2kdmgw64rh496iib36g27asn8n"; depends=[lavaan ggplot2 lattice tkrplot plyr RColorBrewer aplpack]; }; +RSA = derive { name="RSA"; version="0.9.8"; sha256="1pqblhimhj79ss8js0nf8w24ga2kdmgw64rh496iib36g27asn8n"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; RSADBE = derive { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; -RSAGA = derive { name="RSAGA"; version="0.93-6"; sha256="0wqiww0rx5fz4rbsb1x6pr2q0wz5dacj5fc0asj70igxwmh5x0p8"; depends=[gstat shapefiles plyr]; }; -RSAP = derive { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[yaml reshape]; }; -RSDA = derive { name="RSDA"; version="1.2"; sha256="06sa3x0abm2gnf4i4y3d5mlqj1wl7mzzal27sa1x65awzi6rs2kz"; depends=[sqldf XML scales FactoMineR ggplot2 glmnet abind scatterplot3d]; }; +RSAGA = derive { name="RSAGA"; version="0.94-1"; sha256="0zr3rm3s5pf2l2gkvbsr60srj6s1xx7kn26krpbzz3xqgbfgmz6k"; depends=[gstat plyr shapefiles]; }; +RSAP = derive { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[reshape yaml]; }; +RSDA = derive { name="RSDA"; version="1.2"; sha256="06sa3x0abm2gnf4i4y3d5mlqj1wl7mzzal27sa1x65awzi6rs2kz"; depends=[abind FactoMineR ggplot2 glmnet scales scatterplot3d sqldf XML]; }; RSEIS = derive { name="RSEIS"; version="3.4-5"; sha256="0wh7977vm721hb566lh721mwn6b4x0p7x6xb7gv0nvrd3kpsw9zn"; depends=[RPMG Rwave]; }; -RSGHB = derive { name="RSGHB"; version="1.0.2"; sha256="0ffdx9lscbgknfqhvjdh3rwnlhiqxbpqa55jkn111a1vfv726v3d"; depends=[]; }; +RSGHB = derive { name="RSGHB"; version="1.1.0"; sha256="08ir7460mg0f414j69s7ffj35drip9qbbzwva1ps6x0gjjdnmzcq"; depends=[]; }; RSKC = derive { name="RSKC"; version="2.4.1"; sha256="1dvzxf001a9dg71l4bh8z3aia7mymqy800268qf7qzy9n6552g59"; depends=[flexclust]; }; -RSNNS = derive { name="RSNNS"; version="0.4-6"; sha256="1p4gv2v9vzbgaksiibg66l9l9nabnm5lblc17md2cdcb6rygh3hp"; depends=[Rcpp Rcpp]; }; -RSNPset = derive { name="RSNPset"; version="0.4"; sha256="1asrl75jlkdp829phjfza10fcl9akiqspbxncd8zf2a23f2r54sy"; depends=[fastmatch foreach doRNG Rcpp Rcpp RcppEigen]; }; +RSNNS = derive { name="RSNNS"; version="0.4-7"; sha256="15293a6lrihk407spv2ndpcf0r9xm5l8ggc1sagf5r2mvbfiv57c"; depends=[Rcpp]; }; +RSNPset = derive { name="RSNPset"; version="0.4"; sha256="1asrl75jlkdp829phjfza10fcl9akiqspbxncd8zf2a23f2r54sy"; depends=[doRNG fastmatch foreach qvalue Rcpp RcppEigen]; }; +RSPS = derive { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; }; RSQLServer = derive { name="RSQLServer"; version="0.1.1"; sha256="0xaw8a06xgc78hjg4bndip0jpc7l4glk28pggm2l3j31ybx81kw7"; depends=[DBI rJava RJDBC]; }; RSQLite = derive { name="RSQLite"; version="1.0.0"; sha256="08b1syv8z887gxiw8i09dpqh0zisfb6ihq6qqr01zipvkahzq34f"; depends=[DBI]; }; RSVGTipsDevice = derive { name="RSVGTipsDevice"; version="1.0-4"; sha256="1ybk5q4dhskrh7h1sy86ilchdwi6rivy3vv3lph6pms2virgm854"; depends=[]; }; RSclient = derive { name="RSclient"; version="0.7-2"; sha256="04ml4pynjl97295wrclvb61mpwacrkzc9x5pbwyfg1qr3l8hss93"; depends=[]; }; -RSeed = derive { name="RSeed"; version="0.1.31"; sha256="0wljchzkp8800v9zcgjapkbildkb3p2xnkh1m6m7q6qqc9aw8mws"; depends=[sybil]; }; -RSelenium = derive { name="RSelenium"; version="1.3.5"; sha256="15pnmnljl4dm9gbcgnad5j58k6cgs6qm34829kdgyb0ygs9q7ya0"; depends=[RCurl RJSONIO XML caTools]; }; +RSeed = derive { name="RSeed"; version="0.1.31"; sha256="0wljchzkp8800v9zcgjapkbildkb3p2xnkh1m6m7q6qqc9aw8mws"; depends=[graph RBGL sybil]; }; +RSelenium = derive { name="RSelenium"; version="1.3.5"; sha256="15pnmnljl4dm9gbcgnad5j58k6cgs6qm34829kdgyb0ygs9q7ya0"; depends=[caTools RCurl RJSONIO XML]; }; RSiena = derive { name="RSiena"; version="1.1-232"; sha256="0qp3bqq5p19bg47m37s2dw8m4q91hnkc2zxwhsgb076q0xvvv9xq"; depends=[Matrix]; }; -RSiteCatalyst = derive { name="RSiteCatalyst"; version="1.4.3"; sha256="003mazcwz7w814pm8i9zdfmsbijf02n80w48ml4grmjjn1v7x5ar"; depends=[jsonlite httr plyr base64enc digest stringr]; }; -RSocrata = derive { name="RSocrata"; version="1.6.0-12"; sha256="0db1p3bxlh07d43rlg4cmj2gbasqd21mg8qnrrp8zkqasmjdzhn7"; depends=[httr jsonlite mime curl]; }; -RSofia = derive { name="RSofia"; version="1.1"; sha256="0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"; depends=[Rcpp Rcpp]; }; -RStars = derive { name="RStars"; version="1.0"; sha256="1siwqm8sp8wqbb56961drkwcnkv3w1xiy81hxy0zcr2z7rscv7mh"; depends=[RJSONIO RCurl]; }; +RSiteCatalyst = derive { name="RSiteCatalyst"; version="1.4.3"; sha256="003mazcwz7w814pm8i9zdfmsbijf02n80w48ml4grmjjn1v7x5ar"; depends=[base64enc digest httr jsonlite plyr stringr]; }; +RSocrata = derive { name="RSocrata"; version="1.6.0-12"; sha256="0db1p3bxlh07d43rlg4cmj2gbasqd21mg8qnrrp8zkqasmjdzhn7"; depends=[curl httr jsonlite mime]; }; +RSofia = derive { name="RSofia"; version="1.1"; sha256="0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"; depends=[Rcpp]; }; +RStars = derive { name="RStars"; version="1.0"; sha256="1siwqm8sp8wqbb56961drkwcnkv3w1xiy81hxy0zcr2z7rscv7mh"; depends=[RCurl RJSONIO]; }; RStorm = derive { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; }; -RSurveillance = derive { name="RSurveillance"; version="0.1.0"; sha256="1y17bfv0glzzb5rfniia0z4px810kgv2gns0igizw7w427zshnm0"; depends=[epitools epiR]; }; -RSurvey = derive { name="RSurvey"; version="0.8-3"; sha256="0dqrajd3m2v5cd3afl9lni9amfqfv4vhz7kakg3a5180j5rcag12"; depends=[sp rgeos MBA]; }; +RSurveillance = derive { name="RSurveillance"; version="0.1.0"; sha256="1y17bfv0glzzb5rfniia0z4px810kgv2gns0igizw7w427zshnm0"; depends=[epiR epitools]; }; +RSurvey = derive { name="RSurvey"; version="0.8-3"; sha256="0dqrajd3m2v5cd3afl9lni9amfqfv4vhz7kakg3a5180j5rcag12"; depends=[MBA rgeos sp]; }; RSvgDevice = derive { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; }; RTConnect = derive { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; RTDE = derive { name="RTDE"; version="0.1-0"; sha256="00hh1axipp2blrhjwl9mc4fkqv3l132gxlhi9hdy52w20yhwigin"; depends=[]; }; -RTOMO = derive { name="RTOMO"; version="1.1-3"; sha256="10qkqdx2zj2m854z9s57ddf5jbzagac9mq5v6z5393c0s8bx10x8"; depends=[RPMG GEOmap RSEIS splancs]; }; -RTextTools = derive { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[SparseM randomForest tree nnet tm e1071 ipred caTools maxent glmnet tau]; }; +RTOMO = derive { name="RTOMO"; version="1.1-3"; sha256="10qkqdx2zj2m854z9s57ddf5jbzagac9mq5v6z5393c0s8bx10x8"; depends=[GEOmap RPMG RSEIS splancs]; }; +RTextTools = derive { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[caTools e1071 glmnet ipred maxent nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; RTriangle = derive { name="RTriangle"; version="1.6-0.6"; sha256="1g4dp792awbvsl35nvyd8gkx99p2njdcafin16qysfrjl43f5i4s"; depends=[]; }; RUnit = derive { name="RUnit"; version="0.4.28"; sha256="0p631cg014m7linml2770g260ml0jj74d5w82ddl1p2zs5yq57hx"; depends=[]; }; -RVAideMemoire = derive { name="RVAideMemoire"; version="0.9-45-2"; sha256="1c2hmkc34qgi942i4pnw61lk0z6kd4j9424zqqscm77zscfmrmcw"; depends=[ade4 boot cramer car lme4 MASS mixOmics multcompView nnet pspearman statmod vegan]; }; -RVFam = derive { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme survival lme4 kinship2 MASS Matrix]; }; -RVideoPoker = derive { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap tkrplot rpanel]; }; -RVowpalWabbit = derive { name="RVowpalWabbit"; version="0.0.6"; sha256="06f2lmls92qkbscss00c99xkzpx83mgjah6ds0sixv1b2qi216ap"; depends=[Rcpp Rcpp]; }; -RVsharing = derive { name="RVsharing"; version="1.1.0"; sha256="0gcas4rb8pms470dhbm2c2x87an0j594xsziglgd84nqn4gq095d"; depends=[kinship2]; }; -RVtests = derive { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet spls pls]; }; -RWBP = derive { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[RANN igraph lsa SnowballC]; }; +RVAideMemoire = derive { name="RVAideMemoire"; version="0.9-45-2"; sha256="1c2hmkc34qgi942i4pnw61lk0z6kd4j9424zqqscm77zscfmrmcw"; depends=[ade4 boot car cramer lme4 MASS mixOmics multcompView nnet pspearman statmod vegan]; }; +RVFam = derive { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; +RVideoPoker = derive { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; +RVowpalWabbit = derive { name="RVowpalWabbit"; version="0.0.6"; sha256="06f2lmls92qkbscss00c99xkzpx83mgjah6ds0sixv1b2qi216ap"; depends=[Rcpp]; }; +RVsharing = derive { name="RVsharing"; version="1.3.4"; sha256="0v267m7gfvc6fvfh4i53jk2xcr21kih6ddlgvb600j5ck6mi14vf"; depends=[kinship2]; }; +RVtests = derive { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; }; +RWBP = derive { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; RWeather = derive { name="RWeather"; version="0.4"; sha256="1vm8w07gsxwxvg1gpdzn6mpnh8g9kp0ln9fxjw5rl2f1zz80bxpy"; depends=[XML]; }; RWebLogo = derive { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; -RWeka = derive { name="RWeka"; version="0.4-24"; sha256="1nzpwh5i4snlz5hpk27395f6ly2mfzif6fw1cb6yn2sba0nj0ls7"; depends=[RWekajars rJava]; }; +RWeka = derive { name="RWeka"; version="0.4-24"; sha256="1nzpwh5i4snlz5hpk27395f6ly2mfzif6fw1cb6yn2sba0nj0ls7"; depends=[rJava RWekajars]; }; RWekajars = derive { name="RWekajars"; version="3.7.12-1"; sha256="0a3a33l4rglyj95v6m3lqdz0c1fzriprdlp1p8cx2v06n50ymvrz"; depends=[rJava]; }; RWiener = derive { name="RWiener"; version="1.2-0"; sha256="1ssh4xcyr4whgyd91p6bjsm9mq1ajqjqva0yyk13dnf5jfpsr0gs"; depends=[]; }; -RXKCD = derive { name="RXKCD"; version="1.7-5"; sha256="0dsds1bv2vfq61gfppar2ai23dryh09ric5i6zaccms6q64z23md"; depends=[RJSONIO png jpeg plyr]; }; -RXMCDA = derive { name="RXMCDA"; version="1.5.3"; sha256="1pc52kvihxzq12p95r4srmnawxcsvd4r7252dajby338p56d1lw8"; depends=[XML kappalab]; }; +RXKCD = derive { name="RXKCD"; version="1.7-5"; sha256="0dsds1bv2vfq61gfppar2ai23dryh09ric5i6zaccms6q64z23md"; depends=[jpeg plyr png RJSONIO]; }; +RXMCDA = derive { name="RXMCDA"; version="1.5.3"; sha256="1pc52kvihxzq12p95r4srmnawxcsvd4r7252dajby338p56d1lw8"; depends=[kappalab XML]; }; RXshrink = derive { name="RXshrink"; version="1.0-8"; sha256="0l4aknr1vxrkxqsgkjcffs0731jskyzvl055a01vd8h4a0826n5s"; depends=[lars]; }; RYoudaoTranslate = derive { name="RYoudaoTranslate"; version="1.0"; sha256="1i3iyqh97vpn02bm66kkmw52ni29js30v18n2aw8pvr88jpdgxm4"; depends=[RCurl rjson]; }; -RadOnc = derive { name="RadOnc"; version="1.1.0"; sha256="0gjrs78aaqbizzlcyjshc785ams3nclr503p4s2xsmd6sxj4khwi"; depends=[rgl geometry oro_dicom ptinpoly]; }; +RadOnc = derive { name="RadOnc"; version="1.1.0"; sha256="0gjrs78aaqbizzlcyjshc785ams3nclr503p4s2xsmd6sxj4khwi"; depends=[geometry oro_dicom ptinpoly rgl]; }; RadTran = derive { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadioSonde = derive { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; Rambo = derive { name="Rambo"; version="1.1"; sha256="1yc04xsfkc54y19g5iwambgnlc49ixjjvfrafsgis2zh5w6rjwv8"; depends=[sna]; }; Ramd = derive { name="Ramd"; version="0.2"; sha256="0a64rp4dwhfr6vxsmya16x7wy7rxj4n98sdhhyy0ll850rdzlxd8"; depends=[]; }; RandVar = derive { name="RandVar"; version="0.9.2"; sha256="04hw4v2d9aa8z9f8wvwbzhbfy8zjl5q8mpl9b91q86fhh1yq5cz4"; depends=[distr distrEx]; }; RandomFields = derive { name="RandomFields"; version="3.0.62"; sha256="1v2dmwl3nq3mw88439z6hjaf3gkz9sf7dqm9iipgk333qw1s6sfk"; depends=[sp]; }; -RandomFieldsUtils = derive { name="RandomFieldsUtils"; version="0.0.2"; sha256="12vja6ilihy2xq78h6nj1i60vgd5b6pqr2knpw7yq1nix22v4qn9"; depends=[]; }; +RandomFieldsUtils = derive { name="RandomFieldsUtils"; version="0.0.7"; sha256="1rdhc81gd0y5ss1ap74y1n8g2d7z4gjryviw86z53aznn3ddnbhg"; depends=[]; }; RankAggreg = derive { name="RankAggreg"; version="0.5"; sha256="1c5ckk2pfkdxs3l24wgai2xg817wv218fzp7w1r3rcshxf0dcz2i"; depends=[gtools]; }; RankResponse = derive { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; -Rankcluster = derive { name="Rankcluster"; version="0.92.9"; sha256="172jjsyc6a5y32s2fb8z6lgcq6rcwjbk3xnc5vvkhj64amlyxla6"; depends=[Rcpp Rcpp RcppEigen]; }; -RapidPolygonLookup = derive { name="RapidPolygonLookup"; version="0.1"; sha256="0m6r11ksryzcfcm265wr9fhwb867j9ppfhalvvygzig5j85sg92k"; depends=[sp RANN PBSmapping RgoogleMaps]; }; +Rankcluster = derive { name="Rankcluster"; version="0.92.9"; sha256="172jjsyc6a5y32s2fb8z6lgcq6rcwjbk3xnc5vvkhj64amlyxla6"; depends=[Rcpp RcppEigen]; }; +RapidPolygonLookup = derive { name="RapidPolygonLookup"; version="0.1"; sha256="0m6r11ksryzcfcm265wr9fhwb867j9ppfhalvvygzig5j85sg92k"; depends=[PBSmapping RANN RgoogleMaps sp]; }; Rarity = derive { name="Rarity"; version="1.3-4"; sha256="0zz1axr8a1r6js0la2ncls0l6jnjvx807ay2ngzb52hqbijifghx"; depends=[]; }; RaschSampler = derive { name="RaschSampler"; version="0.8-7"; sha256="11vkb5gvr1r2a7fpxyygkixc62ms53dpik9jdg7vrb9k43v82ggj"; depends=[]; }; -RbioRXN = derive { name="RbioRXN"; version="1.5"; sha256="1w4g8a72a7f5m7g43hcybkahn3p51m6jnkydwgrchp53pby8ljxy"; depends=[plyr RCurl gdata data_table stringr]; }; -Rbitcoin = derive { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table RCurl digest RJSONIO]; }; -Rborist = derive { name="Rborist"; version="0.1-0"; sha256="1irb9scl68m7skqdwny9kvnzg7f1r0q1c0whzqyhhj9l4lw16hmr"; depends=[Rcpp Rcpp RcppArmadillo]; }; +RbioRXN = derive { name="RbioRXN"; version="1.5.1"; sha256="0lc43wm986y3xbdh1xihn7w583cql9kvj6rb018pn06ghz153i0d"; depends=[ChemmineR data_table fmcsR gdata KEGGREST plyr RCurl stringr]; }; +Rbitcoin = derive { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; +Rborist = derive { name="Rborist"; version="0.1-0"; sha256="1irb9scl68m7skqdwny9kvnzg7f1r0q1c0whzqyhhj9l4lw16hmr"; depends=[Rcpp RcppArmadillo]; }; Rcapture = derive { name="Rcapture"; version="1.4-2"; sha256="1nsxy5vpfv7fj03i6l5pgzjm0cldwqxxycnvqkfkshbryjcyl0ps"; depends=[]; }; +Rcell = derive { name="Rcell"; version="1.3-2"; sha256="1gfbwarbnv70sawaxv71har1m099icc2347wdvrz3hwmfgw6qm8n"; depends=[digest ggplot2 plyr proto reshape]; }; +RcellData = derive { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; Rcgmin = derive { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; Rchoice = derive { name="Rchoice"; version="0.3"; sha256="1ac2nw03g66z2rgxzv8jqad74cp4c9ry0hvnw77d57ddaxszkrva"; depends=[Formula maxLik msm plm plotrix]; }; -Rclusterpp = derive { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen Rcpp RcppEigen]; }; -Rcmdr = derive { name="Rcmdr"; version="2.1-7"; sha256="1qn0bfh36shdnm2qbjwggjv19vqkkhng82x39sdbljx0z3g3bmdg"; depends=[RcmdrMisc car tcltk2 abind]; }; -RcmdrMisc = derive { name="RcmdrMisc"; version="1.0-2"; sha256="18by1b1iz7q6lbnhxj5l5w58fqsvki84d830sv7iyzrs2q6n7vhq"; depends=[car sandwich abind Hmisc MASS e1071]; }; -RcmdrPlugin_BCA = derive { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xkip7q9i57ghgz0rh0pl8nkl7bflf4w1g4zbyjdlcjypyf7lnr8"; depends=[Rcmdr BCA flexclust car RcmdrMisc nnet foreign rpart rpart_plot]; }; -RcmdrPlugin_DoE = derive { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base FrF2 DoE_wrapper relimp Rcmdr RcmdrMisc]; }; -RcmdrPlugin_EACSPIR = derive { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[R2HTML abind ez nortest reshape Rcmdr RcmdrMisc]; }; -RcmdrPlugin_EBM = derive { name="RcmdrPlugin.EBM"; version="1.0-8"; sha256="0lkj869xdacvnma0qq20fqdsq59jqka2fv5h78f99lybzcb95i11"; depends=[Rcmdr epiR abind]; }; -RcmdrPlugin_EZR = derive { name="RcmdrPlugin.EZR"; version="1.27"; sha256="00yk41f8d7z602xb3hpkk0zr2r17d9ap6sx78ni8wl7rkvmn0c7r"; depends=[Rcmdr]; }; -RcmdrPlugin_EcoVirtual = derive { name="RcmdrPlugin.EcoVirtual"; version="0.1"; sha256="00yk09c1d1frwpfq12zvhg4gnc3p63r61abnil623jpr6wh4b2x8"; depends=[Rcmdr EcoVirtual]; }; +Rclusterpp = derive { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen]; }; +Rcmdr = derive { name="Rcmdr"; version="2.1-7"; sha256="1qn0bfh36shdnm2qbjwggjv19vqkkhng82x39sdbljx0z3g3bmdg"; depends=[abind car RcmdrMisc tcltk2]; }; +RcmdrMisc = derive { name="RcmdrMisc"; version="1.0-2"; sha256="18by1b1iz7q6lbnhxj5l5w58fqsvki84d830sv7iyzrs2q6n7vhq"; depends=[abind car e1071 Hmisc MASS sandwich]; }; +RcmdrPlugin_BCA = derive { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xkip7q9i57ghgz0rh0pl8nkl7bflf4w1g4zbyjdlcjypyf7lnr8"; depends=[BCA car flexclust foreign nnet Rcmdr RcmdrMisc rpart rpart_plot]; }; +RcmdrPlugin_DoE = derive { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; +RcmdrPlugin_EACSPIR = derive { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; +RcmdrPlugin_EBM = derive { name="RcmdrPlugin.EBM"; version="1.0-8"; sha256="0lkj869xdacvnma0qq20fqdsq59jqka2fv5h78f99lybzcb95i11"; depends=[abind epiR Rcmdr]; }; +RcmdrPlugin_EZR = derive { name="RcmdrPlugin.EZR"; version="1.28"; sha256="0by00cnfs0yciy1azqvmcbkbf6r8mr2451xjqqxfd4jwmhg3nrxl"; depends=[Rcmdr]; }; +RcmdrPlugin_EcoVirtual = derive { name="RcmdrPlugin.EcoVirtual"; version="0.1"; sha256="00yk09c1d1frwpfq12zvhg4gnc3p63r61abnil623jpr6wh4b2x8"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_FactoMineR = derive { name="RcmdrPlugin.FactoMineR"; version="1.5-0"; sha256="1hfnn12l3jljqpczpxz4m9ywbmw5rc1c8dpfl4cabrxnh6ymnk1a"; depends=[FactoMineR Rcmdr]; }; -RcmdrPlugin_HH = derive { name="RcmdrPlugin.HH"; version="1.1-42"; sha256="0ra5glv2p4ii2c1b3dyxbdjl4ps6idjpl6ni8ridrfb391qlmyrk"; depends=[HH lattice latticeExtra rgl mgcv Rcmdr]; }; +RcmdrPlugin_HH = derive { name="RcmdrPlugin.HH"; version="1.1-43"; sha256="0bn94wcrzvcrzhixh8kyg5gkax762mskhm2wvdfz1sm3n6fc7281"; depends=[HH lattice mgcv Rcmdr]; }; RcmdrPlugin_IPSUR = derive { name="RcmdrPlugin.IPSUR"; version="0.2-1"; sha256="1lk7divj5va74prsnchq8yx9fbyym7xcsyqzkf72w448fgvvvwlv"; depends=[Rcmdr]; }; RcmdrPlugin_KMggplot2 = derive { name="RcmdrPlugin.KMggplot2"; version="0.2-0"; sha256="1w4n7r3sp6h87wxhrzg500w90p8dzr43j28p8p1r2y0v0i0v6mk5"; depends=[ggplot2 ggthemes gtable plyr Rcmdr RColorBrewer scales survival tcltk2]; }; -RcmdrPlugin_MA = derive { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[Rcmdr MAd metafor]; }; -RcmdrPlugin_MPAStats = derive { name="RcmdrPlugin.MPAStats"; version="1.1.5"; sha256="0km6yglhn0128kk1xm2mnrkr2lkv3r9zndhlv7h1dkd16aph3vm3"; depends=[Rcmdr ordinal]; }; -RcmdrPlugin_NMBU = derive { name="RcmdrPlugin.NMBU"; version="1.8.0.4"; sha256="1qxx685wd974dc2zj7myg0jlxz5s63lkjfycc66f3mcj1qk5j4k6"; depends=[mixlm MASS pls xtable Rcmdr]; }; -RcmdrPlugin_RMTCJags = derive { name="RcmdrPlugin.RMTCJags"; version="1.0"; sha256="0fwzr27pk7p82wj1xbajva1ips15jdfgwxzf7815bcm7x7w9xr8v"; depends=[Rcmdr runjags rmeta igraph coda rjags]; }; -RcmdrPlugin_ROC = derive { name="RcmdrPlugin.ROC"; version="1.0-18"; sha256="0alwsvwry4k65ps00zvdqky9rh663bbfaw15lhwydbgcpqdkn2n6"; depends=[Rcmdr ROCR pROC ResourceSelection]; }; -RcmdrPlugin_SCDA = derive { name="RcmdrPlugin.SCDA"; version="1.1"; sha256="0pd765ndh8d7hy6spds3r4pi09i0ak4b1ygwczp6yr2zcs1aikbc"; depends=[SCVA SCRT SCMA Rcmdr]; }; -RcmdrPlugin_SLC = derive { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[SLC Rcmdr]; }; -RcmdrPlugin_SM = derive { name="RcmdrPlugin.SM"; version="0.3.1"; sha256="10sjh2x02kb6yaxbvd9ihc6777j4iv6wi6k42gyl3k7i2c39fyn3"; depends=[Rcmdr car RColorBrewer colorspace vcd]; }; -RcmdrPlugin_StatisticalURV = derive { name="RcmdrPlugin.StatisticalURV"; version="1.0-1"; sha256="04pqqgy12rnhwm8l0752hb9p5h4l11mm7flm6n9kkcvbkvagsbrz"; depends=[agricolae multcomp car Rcmdr]; }; -RcmdrPlugin_TeachingDemos = derive { name="RcmdrPlugin.TeachingDemos"; version="1.0-7"; sha256="0d473p0df99x9a3jfwb49gxsrcvslcw9yandramwq82cwy3sdcxw"; depends=[rgl TeachingDemos Rcmdr]; }; -RcmdrPlugin_UCA = derive { name="RcmdrPlugin.UCA"; version="1.0-2"; sha256="11a8jaz5vycq8hnpxzrbv1g8vyh0ic1y48952ah633b2j1m1ay8i"; depends=[Rcmdr]; }; -RcmdrPlugin_coin = derive { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[Rcmdr coin survival multcomp]; }; -RcmdrPlugin_depthTools = derive { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[Rcmdr depthTools]; }; -RcmdrPlugin_doex = derive { name="RcmdrPlugin.doex"; version="0.2.0"; sha256="0l3c8vwifyl8a7qkfaqxm7cws2cg1g501qa93w5svcgp03yf98mj"; depends=[Rcmdr multcomp]; }; -RcmdrPlugin_epack = derive { name="RcmdrPlugin.epack"; version="1.2.5"; sha256="1577qhac4rldifax5x3l39cddan6dhq2dv4iv2n64nadgrl0259w"; depends=[Rcmdr TeachingDemos tseries abind MASS xts forecast]; }; +RcmdrPlugin_MA = derive { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[MAd metafor Rcmdr]; }; +RcmdrPlugin_MPAStats = derive { name="RcmdrPlugin.MPAStats"; version="1.1.5"; sha256="0km6yglhn0128kk1xm2mnrkr2lkv3r9zndhlv7h1dkd16aph3vm3"; depends=[ordinal Rcmdr]; }; +RcmdrPlugin_NMBU = derive { name="RcmdrPlugin.NMBU"; version="1.8.0.4"; sha256="1qxx685wd974dc2zj7myg0jlxz5s63lkjfycc66f3mcj1qk5j4k6"; depends=[MASS mixlm pls Rcmdr xtable]; }; +RcmdrPlugin_RMTCJags = derive { name="RcmdrPlugin.RMTCJags"; version="1.0"; sha256="0fwzr27pk7p82wj1xbajva1ips15jdfgwxzf7815bcm7x7w9xr8v"; depends=[coda igraph Rcmdr rjags rmeta runjags]; }; +RcmdrPlugin_ROC = derive { name="RcmdrPlugin.ROC"; version="1.0-18"; sha256="0alwsvwry4k65ps00zvdqky9rh663bbfaw15lhwydbgcpqdkn2n6"; depends=[pROC Rcmdr ResourceSelection ROCR]; }; +RcmdrPlugin_SCDA = derive { name="RcmdrPlugin.SCDA"; version="1.1"; sha256="0pd765ndh8d7hy6spds3r4pi09i0ak4b1ygwczp6yr2zcs1aikbc"; depends=[Rcmdr SCMA SCRT SCVA]; }; +RcmdrPlugin_SLC = derive { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; }; +RcmdrPlugin_SM = derive { name="RcmdrPlugin.SM"; version="0.3.1"; sha256="10sjh2x02kb6yaxbvd9ihc6777j4iv6wi6k42gyl3k7i2c39fyn3"; depends=[car colorspace Rcmdr RColorBrewer vcd]; }; +RcmdrPlugin_StatisticalURV = derive { name="RcmdrPlugin.StatisticalURV"; version="1.0-1"; sha256="04pqqgy12rnhwm8l0752hb9p5h4l11mm7flm6n9kkcvbkvagsbrz"; depends=[agricolae car multcomp Rcmdr]; }; +RcmdrPlugin_TeachingDemos = derive { name="RcmdrPlugin.TeachingDemos"; version="1.0-7"; sha256="0d473p0df99x9a3jfwb49gxsrcvslcw9yandramwq82cwy3sdcxw"; depends=[Rcmdr rgl TeachingDemos]; }; +RcmdrPlugin_UCA = derive { name="RcmdrPlugin.UCA"; version="2.0-4"; sha256="066h5idmmjng4i1n84rbvqgjnj7f1xrj32l1icm1dw3gsh2ipa5l"; depends=[randtests Rcmdr tseries]; }; +RcmdrPlugin_coin = derive { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; +RcmdrPlugin_depthTools = derive { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[depthTools Rcmdr]; }; +RcmdrPlugin_doex = derive { name="RcmdrPlugin.doex"; version="0.2.0"; sha256="0l3c8vwifyl8a7qkfaqxm7cws2cg1g501qa93w5svcgp03yf98mj"; depends=[multcomp Rcmdr]; }; +RcmdrPlugin_epack = derive { name="RcmdrPlugin.epack"; version="1.2.5"; sha256="1577qhac4rldifax5x3l39cddan6dhq2dv4iv2n64nadgrl0259w"; depends=[abind forecast MASS Rcmdr TeachingDemos tseries xts]; }; RcmdrPlugin_lfstat = derive { name="RcmdrPlugin.lfstat"; version="0.7"; sha256="009yj9c5cr34k8qa16q19sp7c5iwv95g9swbm004nr18mfah8x9w"; depends=[lfstat Rcmdr]; }; -RcmdrPlugin_mosaic = derive { name="RcmdrPlugin.mosaic"; version="1.0-7"; sha256="0k6xaz2dfm9ch9lxqsh19jm8d4bbyjj2ffmjjxl57kanb3pvrrwv"; depends=[ENmisc vcd Hmisc Rcmdr]; }; +RcmdrPlugin_mosaic = derive { name="RcmdrPlugin.mosaic"; version="1.0-7"; sha256="0k6xaz2dfm9ch9lxqsh19jm8d4bbyjj2ffmjjxl57kanb3pvrrwv"; depends=[ENmisc Hmisc Rcmdr vcd]; }; RcmdrPlugin_orloca = derive { name="RcmdrPlugin.orloca"; version="4.1"; sha256="19qj6llr5sfw267dgbn2jvrsisb54qbjhgaiigfzymk6px33wwmg"; depends=[orloca orloca_es Rcmdr]; }; -RcmdrPlugin_plotByGroup = derive { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[Rcmdr lattice]; }; +RcmdrPlugin_plotByGroup = derive { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; }; RcmdrPlugin_pointG = derive { name="RcmdrPlugin.pointG"; version="0.6.6"; sha256="0sc3akbpdys353va05b40g3rq8qihw0pmhvv0kckkhsgrbr8mc07"; depends=[Rcmdr RColorBrewer]; }; RcmdrPlugin_qual = derive { name="RcmdrPlugin.qual"; version="2.2.6"; sha256="00wznh0k909cd9vwdj1ag3224xkqnwjsad1bfkgxbszsx0w6xvy9"; depends=[Rcmdr]; }; -RcmdrPlugin_sampling = derive { name="RcmdrPlugin.sampling"; version="1.1"; sha256="0fx0s63wq0si1jydl9xyj9ny7iglg91zpvkyrnc05i5pan9l3xd9"; depends=[lpSolve sampling MASS Rcmdr]; }; -RcmdrPlugin_seeg = derive { name="RcmdrPlugin.seeg"; version="1.0"; sha256="105c2rl3mrcv7r3iqa9d2zs6cys7vfpyydylkg2cggfqkghxgr95"; depends=[Rcmdr seeg spatstat sgeostat]; }; -RcmdrPlugin_sos = derive { name="RcmdrPlugin.sos"; version="0.3-0"; sha256="1r9jxzmf5ks62b5jbw0pkf388i1lnld6i27xhfzysjqdxcnzdsdz"; depends=[sos Rcmdr tcltk2]; }; +RcmdrPlugin_sampling = derive { name="RcmdrPlugin.sampling"; version="1.1"; sha256="0fx0s63wq0si1jydl9xyj9ny7iglg91zpvkyrnc05i5pan9l3xd9"; depends=[lpSolve MASS Rcmdr sampling]; }; +RcmdrPlugin_seeg = derive { name="RcmdrPlugin.seeg"; version="1.0"; sha256="105c2rl3mrcv7r3iqa9d2zs6cys7vfpyydylkg2cggfqkghxgr95"; depends=[Rcmdr seeg sgeostat spatstat]; }; +RcmdrPlugin_sos = derive { name="RcmdrPlugin.sos"; version="0.3-0"; sha256="1r9jxzmf5ks62b5jbw0pkf388i1lnld6i27xhfzysjqdxcnzdsdz"; depends=[Rcmdr sos tcltk2]; }; RcmdrPlugin_steepness = derive { name="RcmdrPlugin.steepness"; version="0.3-2"; sha256="1na98sl42896y7yklaj07sn88lj6p6ik7gwy9ffaxzicqaa8plgf"; depends=[Rcmdr steepness]; }; -RcmdrPlugin_survival = derive { name="RcmdrPlugin.survival"; version="1.0-5"; sha256="1gcc9l1x0vmzmq7v09mzybig1js5jsgsq84096yk494w3dnzrr0a"; depends=[survival date Rcmdr]; }; -RcmdrPlugin_temis = derive { name="RcmdrPlugin.temis"; version="0.7.3"; sha256="1ssnky8basr135lhnagq7dlwlj1c9qrvm14hbdm0k3g9gnqmxkgh"; depends=[tm NLP slam zoo lattice Rcmdr tcltk2 ca R2HTML RColorBrewer latticeExtra stringi]; }; +RcmdrPlugin_survival = derive { name="RcmdrPlugin.survival"; version="1.0-5"; sha256="1gcc9l1x0vmzmq7v09mzybig1js5jsgsq84096yk494w3dnzrr0a"; depends=[date Rcmdr survival]; }; +RcmdrPlugin_temis = derive { name="RcmdrPlugin.temis"; version="0.7.3"; sha256="1ssnky8basr135lhnagq7dlwlj1c9qrvm14hbdm0k3g9gnqmxkgh"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcolombos = derive { name="Rcolombos"; version="1.5.2"; sha256="1whjn447jk2bjyjf0fwl0165f8x41fjzmkmagl6dfq1c4373sf27"; depends=[httr]; }; Rcplex = derive { name="Rcplex"; version="0.3-2"; sha256="1hx9s327af7yawzyq5isvx8n6pvr0481lrfajgh8nihj7g69nmk7"; depends=[slam]; }; Rcpp = derive { name="Rcpp"; version="0.11.6"; sha256="153gwzg2inxmzs5qrr87r3zabjvfh32i8kdivdy77b3c5yfrl5za"; depends=[]; }; Rcpp11 = derive { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; -RcppAPT = derive { name="RcppAPT"; version="0.0.1"; sha256="0fyya80bd3w22qbsbznj9y21dwlj30a16d8a8kww4x8bpvmyil5z"; depends=[Rcpp Rcpp]; }; -RcppAnnoy = derive { name="RcppAnnoy"; version="0.0.6"; sha256="1n4wrllhxn95lgkralvw5jjgff93nay5wdlyihih7f195fq5wqms"; depends=[Rcpp Rcpp]; }; -RcppArmadillo = derive { name="RcppArmadillo"; version="0.5.100.1.0"; sha256="0126g932fq24ns4yzj3z2dwagdy9qb7ckprk30zs7alq6rayfmn5"; depends=[Rcpp Rcpp]; }; -RcppBDT = derive { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[Rcpp Rcpp BH]; }; -RcppCNPy = derive { name="RcppCNPy"; version="0.2.4"; sha256="1cawaxghbliy7hgvqz3y69asl43bl9mxf46nwpbxc0vx3cq15fnk"; depends=[Rcpp Rcpp]; }; -RcppClassic = derive { name="RcppClassic"; version="0.9.6"; sha256="1xhjama6f1iy7nagnx1y1pkqffrq8iyplllcar24vxr0zirgi1xi"; depends=[Rcpp Rcpp]; }; -RcppClassicExamples = derive { name="RcppClassicExamples"; version="0.1.1"; sha256="0shs12y3gj5p7gharjik48dqk0fy4k2jx7h22ppvgbs8z85qjrb8"; depends=[Rcpp RcppClassic Rcpp RcppClassic]; }; -RcppDE = derive { name="RcppDE"; version="0.1.2"; sha256="0ji5csfygqvrcahgx5gxy7dddpykckzw8hmqslsdl7l68wj60qkc"; depends=[Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; -RcppDL = derive { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp Rcpp]; }; -RcppEigen = derive { name="RcppEigen"; version="0.3.2.4.0"; sha256="1p6lfylj0mh059pxbp198r8nci8f89h0gb11x2pi0jgg7cqbxgh6"; depends=[Matrix Rcpp Rcpp]; }; -RcppExamples = derive { name="RcppExamples"; version="0.1.6"; sha256="1jnqh9nii5nncsah0lrkls8dqqcka9fnbvfg8ikl4cqjri17rpbv"; depends=[Rcpp Rcpp]; }; -RcppGSL = derive { name="RcppGSL"; version="0.2.4"; sha256="1nw1984siwxvihp68g7khr2c4a4nwyb4ll04r5302kksz4nh7mpi"; depends=[Rcpp Rcpp]; }; -RcppMLPACK = derive { name="RcppMLPACK"; version="1.0.10-2"; sha256="1hdvdk6ni2iganmldarklv635yzgzja36zcpflh5w45c5y3ysqvj"; depends=[Rcpp Rcpp RcppArmadillo BH]; }; -RcppOctave = derive { name="RcppOctave"; version="0.14.5"; sha256="0dplc2x9fq2jfzfbcxdd45pmiimapqb3xhyjkzd4k6q8xmqjw95p"; depends=[Rcpp pkgmaker digest stringr Rcpp]; }; -RcppParallel = derive { name="RcppParallel"; version="4.3.8"; sha256="0gk42v2qxjgz34ispcyr0mizbp3l9l0p6jpw3y59vafpbkgdk0yg"; depends=[]; }; -RcppProgress = derive { name="RcppProgress"; version="0.2.1"; sha256="1dah99679hs6pcaazxyc52xpx5wawk95r2bpx9fx0i33fqs1s4ng"; depends=[Rcpp Rcpp]; }; -RcppRedis = derive { name="RcppRedis"; version="0.1.3"; sha256="0xpldiny2n121dp7vpj9l3bjvjhbfkdim5cassvvj2wms9q4jvh5"; depends=[Rcpp RApiSerialize Rcpp RApiSerialize]; }; -RcppRoll = derive { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp Rcpp]; }; -RcppSMC = derive { name="RcppSMC"; version="0.1.4"; sha256="1gcqffb6rkw029cpzv7bzsxaq0a5b032zjvriw6yjzyrpi944ip7"; depends=[Rcpp Rcpp]; }; -RcppStreams = derive { name="RcppStreams"; version="0.1.0"; sha256="0pb9ri2jajfh7643wx730bkmpvjvvmip682ynm2yn6x6brjll6jf"; depends=[Rcpp Rcpp BH]; }; -RcppTOML = derive { name="RcppTOML"; version="0.0.3"; sha256="0v9gxbr5gb7k273ld6vx2n0vzy22px13s7cvackbm7mhc68bp5jw"; depends=[Rcpp Rcpp]; }; -RcppXts = derive { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts Rcpp xts]; }; -RcppZiggurat = derive { name="RcppZiggurat"; version="0.1.2"; sha256="05ai6s2j025fvr4znpmsvhxj4x7xyw2wsb9j3c5sv7aw1byfs0bb"; depends=[Rcpp Rcpp RcppGSL]; }; +RcppAPT = derive { name="RcppAPT"; version="0.0.1"; sha256="0fyya80bd3w22qbsbznj9y21dwlj30a16d8a8kww4x8bpvmyil5z"; depends=[Rcpp]; }; +RcppAnnoy = derive { name="RcppAnnoy"; version="0.0.6"; sha256="1n4wrllhxn95lgkralvw5jjgff93nay5wdlyihih7f195fq5wqms"; depends=[Rcpp]; }; +RcppArmadillo = derive { name="RcppArmadillo"; version="0.5.200.1.0"; sha256="0vz0yl5k0q57xrnjpz1bxs6j3hpysp1mkcxf5fs6xdy6nzaqsr7x"; depends=[Rcpp]; }; +RcppBDT = derive { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; +RcppCNPy = derive { name="RcppCNPy"; version="0.2.4"; sha256="1cawaxghbliy7hgvqz3y69asl43bl9mxf46nwpbxc0vx3cq15fnk"; depends=[Rcpp]; }; +RcppClassic = derive { name="RcppClassic"; version="0.9.6"; sha256="1xhjama6f1iy7nagnx1y1pkqffrq8iyplllcar24vxr0zirgi1xi"; depends=[Rcpp]; }; +RcppClassicExamples = derive { name="RcppClassicExamples"; version="0.1.1"; sha256="0shs12y3gj5p7gharjik48dqk0fy4k2jx7h22ppvgbs8z85qjrb8"; depends=[Rcpp RcppClassic]; }; +RcppDE = derive { name="RcppDE"; version="0.1.2"; sha256="0ji5csfygqvrcahgx5gxy7dddpykckzw8hmqslsdl7l68wj60qkc"; depends=[Rcpp RcppArmadillo]; }; +RcppDL = derive { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; +RcppEigen = derive { name="RcppEigen"; version="0.3.2.4.0"; sha256="1p6lfylj0mh059pxbp198r8nci8f89h0gb11x2pi0jgg7cqbxgh6"; depends=[Matrix Rcpp]; }; +RcppExamples = derive { name="RcppExamples"; version="0.1.6"; sha256="1jnqh9nii5nncsah0lrkls8dqqcka9fnbvfg8ikl4cqjri17rpbv"; depends=[Rcpp]; }; +RcppFaddeeva = derive { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; +RcppGSL = derive { name="RcppGSL"; version="0.2.4"; sha256="1nw1984siwxvihp68g7khr2c4a4nwyb4ll04r5302kksz4nh7mpi"; depends=[Rcpp]; }; +RcppMLPACK = derive { name="RcppMLPACK"; version="1.0.10-2"; sha256="1hdvdk6ni2iganmldarklv635yzgzja36zcpflh5w45c5y3ysqvj"; depends=[BH Rcpp RcppArmadillo]; }; +RcppOctave = derive { name="RcppOctave"; version="0.14.5"; sha256="0dplc2x9fq2jfzfbcxdd45pmiimapqb3xhyjkzd4k6q8xmqjw95p"; depends=[digest pkgmaker Rcpp stringr]; }; +RcppParallel = derive { name="RcppParallel"; version="4.3.14"; sha256="04kch598fqxkclv7ys8s9mqsd9wbzjqk1yjc66drzyycjc8jl9qi"; depends=[]; }; +RcppProgress = derive { name="RcppProgress"; version="0.2.1"; sha256="1dah99679hs6pcaazxyc52xpx5wawk95r2bpx9fx0i33fqs1s4ng"; depends=[Rcpp]; }; +RcppRedis = derive { name="RcppRedis"; version="0.1.3"; sha256="0xpldiny2n121dp7vpj9l3bjvjhbfkdim5cassvvj2wms9q4jvh5"; depends=[RApiSerialize Rcpp]; }; +RcppRoll = derive { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp]; }; +RcppSMC = derive { name="RcppSMC"; version="0.1.4"; sha256="1gcqffb6rkw029cpzv7bzsxaq0a5b032zjvriw6yjzyrpi944ip7"; depends=[Rcpp]; }; +RcppStreams = derive { name="RcppStreams"; version="0.1.0"; sha256="0pb9ri2jajfh7643wx730bkmpvjvvmip682ynm2yn6x6brjll6jf"; depends=[BH Rcpp]; }; +RcppTOML = derive { name="RcppTOML"; version="0.0.3"; sha256="0v9gxbr5gb7k273ld6vx2n0vzy22px13s7cvackbm7mhc68bp5jw"; depends=[Rcpp]; }; +RcppXts = derive { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; +RcppZiggurat = derive { name="RcppZiggurat"; version="0.1.2"; sha256="05ai6s2j025fvr4znpmsvhxj4x7xyw2wsb9j3c5sv7aw1byfs0bb"; depends=[Rcpp RcppGSL]; }; Rcsdp = derive { name="Rcsdp"; version="0.1.53"; sha256="0x91hyx6z9f4zd7djxlq7dnznmr9skyzwbbcbjyid9hxbcfyvhcp"; depends=[]; }; -Rd2roxygen = derive { name="Rd2roxygen"; version="1.6"; sha256="0y0vh1dfflh8lrgrdj9wfmwh70ywd9kiia49f09h849mv1ln1z60"; depends=[roxygen2 formatR]; }; +Rd2roxygen = derive { name="Rd2roxygen"; version="1.6"; sha256="0y0vh1dfflh8lrgrdj9wfmwh70ywd9kiia49f09h849mv1ln1z60"; depends=[formatR roxygen2]; }; Rdistance = derive { name="Rdistance"; version="1.2.2"; sha256="0njfcgcaw8vkvayd102wd5cdp1ai9ghqhi8zsijv6iifxs6yvwq9"; depends=[]; }; -Rdpack = derive { name="Rdpack"; version="0.4-14"; sha256="19vscr9l63c074n76b6a6jbl956sphjhz0d50yiwp3cvqf28yssf"; depends=[gbRd bibtex]; }; +Rdpack = derive { name="Rdpack"; version="0.4-14"; sha256="19vscr9l63c074n76b6a6jbl956sphjhz0d50yiwp3cvqf28yssf"; depends=[bibtex gbRd]; }; Rdsdp = derive { name="Rdsdp"; version="1.0.2"; sha256="0rpy3897dargrfrn6qd5m1j6i1pvfk2qa3cny0iacqkgqbg8a4wx"; depends=[]; }; Rdsm = derive { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; }; ReCiPa = derive { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; -ReacTran = derive { name="ReacTran"; version="1.4.2"; sha256="1yc0k3wgg4yb6cqmjkyl25sfkbfcfxi5ria106w5jyx7dr5lfvdi"; depends=[rootSolve deSolve shape]; }; -RealVAMS = derive { name="RealVAMS"; version="0.3-1"; sha256="04d4sc3lhlklx1y016rmh3x27m8caxlp53qn2ks5wz52w26pfdhn"; depends=[Matrix numDeriv Rcpp Rcpp RcppArmadillo]; }; -RecordLinkage = derive { name="RecordLinkage"; version="0.4-7"; sha256="18v9jihp00xfz80vkg054v93w6grnp3aaf7prlzckwxs5i5lff70"; depends=[DBI RSQLite ff ffbase e1071 rpart ada ipred evd data_table nnet xtable RSQLite]; }; +ReacTran = derive { name="ReacTran"; version="1.4.2"; sha256="1yc0k3wgg4yb6cqmjkyl25sfkbfcfxi5ria106w5jyx7dr5lfvdi"; depends=[deSolve rootSolve shape]; }; +RealVAMS = derive { name="RealVAMS"; version="0.3-1"; sha256="04d4sc3lhlklx1y016rmh3x27m8caxlp53qn2ks5wz52w26pfdhn"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; +RecordLinkage = derive { name="RecordLinkage"; version="0.4-8"; sha256="0wjjrgmz7m11hhsw7dcg3745255xckdgrqp3xlqkyh2kzbyr9rp4"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; Records = derive { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; +RedditExtractoR = derive { name="RedditExtractoR"; version="1.0.0"; sha256="197zqivkk00ch6vgh9cdqwjwj6gjfbzrvc0cpra1zk8b3h4qx5na"; depends=[RJSONIO]; }; RefFreeEWAS = derive { name="RefFreeEWAS"; version="1.3"; sha256="1cb1q2nki0d18ia4cmi1sp7qih9hv7g1jk1kyp7vya5gp572z3cd"; depends=[isva]; }; -RefManageR = derive { name="RefManageR"; version="0.8.45"; sha256="16smvd25gdssiry2i8gs24km83hnsq2v6m225i7qadcmn9pyj4yh"; depends=[XML RCurl RJSONIO plyr bibtex lubridate stringr]; }; +RefManageR = derive { name="RefManageR"; version="0.8.63"; sha256="17gmdyaqg8swfhpa1n8h1rj7aamrgdcprf56vx643ivhih8kgdj4"; depends=[bibtex lubridate plyr RCurl RJSONIO stringr XML]; }; RegClust = derive { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; RegressionFactory = derive { name="RegressionFactory"; version="0.7.1"; sha256="1zx885x49ncp2cl1v8hxzc3r2njka9cjsadjykbvqp9pdbm4ga5l"; depends=[]; }; RelValAnalysis = derive { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; Reliability = derive { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; }; -ReliabilityTheory = derive { name="ReliabilityTheory"; version="0.1.4"; sha256="1faab4z3rp0xqc0s0rrkw4kxgyc332xz3sjaz1wd4p6kiydds2hi"; depends=[igraph sfsmisc combinat FRACTION mcmc PhaseType actuar HI]; }; +ReliabilityTheory = derive { name="ReliabilityTheory"; version="0.1.4"; sha256="1faab4z3rp0xqc0s0rrkw4kxgyc332xz3sjaz1wd4p6kiydds2hi"; depends=[actuar combinat FRACTION HI igraph mcmc PhaseType sfsmisc]; }; Renext = derive { name="Renext"; version="2.1-10"; sha256="1c18v9xya73j8qnqvkb4fc7bfvzxnw904z5n9n9rgch70nrccqfn"; depends=[evd numDeriv]; }; RenextGUI = derive { name="RenextGUI"; version="1.0-2"; sha256="0ghs8bwb6qdyvhghxvdy51cibylgm7bdbzgqsn1nbxam39yhvfv9"; depends=[gWidgets gWidgetstcltk Renext]; }; -Reol = derive { name="Reol"; version="1.55"; sha256="0147x3fvafc47zd2chgv3b40k480pcjpji8vm1d741i1p6ml448p"; depends=[XML RCurl ape]; }; -ReorderCluster = derive { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp Rcpp]; }; +Reol = derive { name="Reol"; version="1.55"; sha256="0147x3fvafc47zd2chgv3b40k480pcjpji8vm1d741i1p6ml448p"; depends=[ape RCurl XML]; }; +ReorderCluster = derive { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; RepeatedHighDim = derive { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; ReporteRs = derive { name="ReporteRs"; version="0.7.8"; sha256="1gzsdrkmz2g59m2653xfcl4d6zs010hzcjxr6sk26dhxj11alqgr"; depends=[ReporteRsjars rJava]; }; ReporteRsjars = derive { name="ReporteRsjars"; version="0.0.2"; sha256="1abvgzxipg0cgiy26z14i99qydzqva6j2v7pnrxapysg7ml5cnjc"; depends=[rJava]; }; ResistorArray = derive { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; ResourceSelection = derive { name="ResourceSelection"; version="0.2-4"; sha256="01r1w03paazyix5jjxww89falba1qfiqcznx79a6fmsiv8gm2x5w"; depends=[]; }; -Rfacebook = derive { name="Rfacebook"; version="0.5"; sha256="0cl4s815i4yxp805j8nhqmva31imbd1xp3yxgi53qwjhagh4i57a"; depends=[httr rjson httpuv]; }; +RevEcoR = derive { name="RevEcoR"; version="0.99.2"; sha256="100sman51vvwg5xkypmksyyjqdb6g858z29vn7x4kvly8ncw4hfd"; depends=[gtools igraph magrittr Matrix plyr stringr XML]; }; +Rfacebook = derive { name="Rfacebook"; version="0.5"; sha256="0cl4s815i4yxp805j8nhqmva31imbd1xp3yxgi53qwjhagh4i57a"; depends=[httpuv httr rjson]; }; Rfit = derive { name="Rfit"; version="0.21"; sha256="129z5ivwfxbh3rfwk98jnm6ibq5z9z3r9mhy9gv61jfr4ig78dcn"; depends=[quantreg]; }; Rglpk = derive { name="Rglpk"; version="0.6-0"; sha256="0g0s63skabr0yqk5s9p66p77z8v3pr3hbnirbgdddlvkpphi08xx"; depends=[slam]; }; RgoogleMaps = derive { name="RgoogleMaps"; version="1.2.0.7"; sha256="04k7h8hgxvgsccdiysbblplwjvn8m7g8h3anzdlxmmjaamd8l9lw"; depends=[png RJSONIO]; }; Rhh = derive { name="Rhh"; version="1.0.2"; sha256="0blxim8yrb0qnbkc1z2q24q6ryakggq2zhaa223swla99ahmsny3"; depends=[]; }; -Rhpc = derive { name="Rhpc"; version="0.14-261"; sha256="09rb68dys283gqmgn00v5skz6y5mcychg7hjrmi59pcfl5i7sk71"; depends=[]; }; -RhpcBLASctl = derive { name="RhpcBLASctl"; version="0.14-256"; sha256="1s9mwwh269wwdqnb98jxsmpjm2bdf5dj4c3wkj5i81w2p1sm8qx3"; depends=[]; }; +Rhpc = derive { name="Rhpc"; version="0.15-147"; sha256="1cb60vsvv6vj0sa1p9p05d16xi446qqckjzbiz0lmiy7k43nyccm"; depends=[]; }; +RhpcBLASctl = derive { name="RhpcBLASctl"; version="0.15-148"; sha256="1carylfz9gafradbdyg7fz2bypr7n72fbm8vhyiinmp0k4s5ipvc"; depends=[]; }; RidgeFusion = derive { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; Ritc = derive { name="Ritc"; version="1.0.1"; sha256="1h41s4jihzj0yj8xyan0zhhyyiq8m5567vw4gvmmr81p1qfzvva8"; depends=[minpack_lm]; }; @@ -1813,61 +1854,64 @@ Rivivc = derive { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z Rjpstatdb = derive { name="Rjpstatdb"; version="0.1"; sha256="0iwgsp3mblp7bsx88wfpqn09y1xrkingfkm3z9jsi2bwrnrjc2iv"; depends=[RCurl XML]; }; Rlab = derive { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; Rlabkey = derive { name="Rlabkey"; version="2.1.127"; sha256="1bacl4ax9bgn27180hgh6gr4y0bwl3q4y18mc0cyb06yagzci5d9"; depends=[RCurl rjson]; }; -Rlibeemd = derive { name="Rlibeemd"; version="1.3.2"; sha256="0db6x2cry011ymmfy1pxgdyjdn6l93d8wmixp59r51yij2s775xq"; depends=[Rcpp Rcpp]; }; -Rlinkedin = derive { name="Rlinkedin"; version="0.1"; sha256="0w30zv4a842vckk4yqsh8hhkdz2gy650a0x29aacp77p9y79g9yn"; depends=[httr XML httpuv]; }; -Rmalschains = derive { name="Rmalschains"; version="0.2-2"; sha256="1ki3igj78sk4kk1cvbzrgzjdvw6kbdb7dmqglh6ws2nmr5b6a7fx"; depends=[Rcpp Rcpp]; }; +Rlibeemd = derive { name="Rlibeemd"; version="1.3.2"; sha256="0db6x2cry011ymmfy1pxgdyjdn6l93d8wmixp59r51yij2s775xq"; depends=[Rcpp]; }; +Rlinkedin = derive { name="Rlinkedin"; version="0.1"; sha256="0w30zv4a842vckk4yqsh8hhkdz2gy650a0x29aacp77p9y79g9yn"; depends=[httpuv httr XML]; }; +Rmalschains = derive { name="Rmalschains"; version="0.2-2"; sha256="1ki3igj78sk4kk1cvbzrgzjdvw6kbdb7dmqglh6ws2nmr5b6a7fx"; depends=[Rcpp]; }; Rmisc = derive { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; -Rmixmod = derive { name="Rmixmod"; version="2.0.2"; sha256="1qv6zymkgsbplrq4aa87lvcsv75dssj8qqq2h9665v31jsgx84lr"; depends=[Rcpp Rcpp]; }; -RmixmodCombi = derive { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rmixmod Rcpp]; }; -Rmonkey = derive { name="Rmonkey"; version="0.2.11"; sha256="0dfn38ni06k0q7a10ilb3169ffc71mizf25jfiqmbmqw08az8bhf"; depends=[RCurl httr jsonlite plyr]; }; -Rmosek = derive { name="Rmosek"; version="1.2.5.1"; sha256="0zggv699s93i9g98qjs4ci2nprgfkzq45lpzgrbhldsxiflf27gz"; depends=[Matrix Matrix]; }; +Rmixmod = derive { name="Rmixmod"; version="2.0.2"; sha256="1qv6zymkgsbplrq4aa87lvcsv75dssj8qqq2h9665v31jsgx84lr"; depends=[Rcpp]; }; +RmixmodCombi = derive { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; +Rmonkey = derive { name="Rmonkey"; version="0.2.11"; sha256="0dfn38ni06k0q7a10ilb3169ffc71mizf25jfiqmbmqw08az8bhf"; depends=[httr jsonlite plyr RCurl]; }; +Rmosek = derive { name="Rmosek"; version="1.2.5.1"; sha256="0zggv699s93i9g98qjs4ci2nprgfkzq45lpzgrbhldsxiflf27gz"; depends=[Matrix]; }; Rmpfr = derive { name="Rmpfr"; version="0.5-7"; sha256="0bqjs65wlnpq95smnnwpqjrqgwda412z2qbyafa8jw6972lmsyq9"; depends=[gmp]; }; Rmpi = derive { name="Rmpi"; version="0.6-5"; sha256="0i9z3c45jyxy86yh3f2nja5miv5dbnipm7fpm751i7qh630acykc"; depends=[]; }; -RnavGraph = derive { name="RnavGraph"; version="0.1.8"; sha256="1fwzfy41gdr1aw1wg6dw04mxwwpp5s9x2inxyq3bc9s8bm1rlxih"; depends=[scagnostics rgl]; }; +RnavGraph = derive { name="RnavGraph"; version="0.1.8"; sha256="1fwzfy41gdr1aw1wg6dw04mxwwpp5s9x2inxyq3bc9s8bm1rlxih"; depends=[graph rgl scagnostics]; }; RnavGraphImageData = derive { name="RnavGraphImageData"; version="0.0.3"; sha256="1mrh0p2ckczw4xr1kfmcf0ri2h2fhp7fmf8sn2h1capmm12i1q8f"; depends=[]; }; -RobAStBase = derive { name="RobAStBase"; version="0.9"; sha256="1428xaplcjq6r0migbaqncfj0iz8hzzfabmabm167p44wa2bwbwh"; depends=[rrcov distr distrEx distrMod RandVar]; }; -RobLox = derive { name="RobLox"; version="0.9"; sha256="1ws6bkzvg1y1cwmls71das0lih6gncx5w3ncd2siznapd4n44p69"; depends=[distrMod RobAStBase lattice RColorBrewer RandVar distr]; }; -RobLoxBioC = derive { name="RobLoxBioC"; version="0.9"; sha256="0ia7vn8x8whyp8kl7mpwd6fd0yv0y3pb1mppnh2329x7xdvcs5j4"; depends=[RobLox lattice RColorBrewer distr]; }; -RobPer = derive { name="RobPer"; version="1.2.1"; sha256="1impcp2yfxxh439a70s2gqwfng6cgi123y20fd01b84jkp9gx3hi"; depends=[robustbase quantreg BB rgenoud]; }; +RobAStBase = derive { name="RobAStBase"; version="0.9"; sha256="1428xaplcjq6r0migbaqncfj0iz8hzzfabmabm167p44wa2bwbwh"; depends=[distr distrEx distrMod RandVar rrcov]; }; +RobLox = derive { name="RobLox"; version="0.9"; sha256="1ws6bkzvg1y1cwmls71das0lih6gncx5w3ncd2siznapd4n44p69"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; +RobLoxBioC = derive { name="RobLoxBioC"; version="0.9"; sha256="0ia7vn8x8whyp8kl7mpwd6fd0yv0y3pb1mppnh2329x7xdvcs5j4"; depends=[affy beadarray Biobase BiocGenerics distr lattice RColorBrewer RobLox]; }; +RobPer = derive { name="RobPer"; version="1.2.1"; sha256="1impcp2yfxxh439a70s2gqwfng6cgi123y20fd01b84jkp9gx3hi"; depends=[BB quantreg rgenoud robustbase]; }; RobRSVD = derive { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; RobRex = derive { name="RobRex"; version="0.9"; sha256="0ii539mjq462n1lbnyv3whl8b1agvhvlz31wwyz911gb40isl639"; depends=[ROptRegTS]; }; RobustAFT = derive { name="RobustAFT"; version="1.3"; sha256="0cxyvq75bwhjh3qzfj6ynmy8mby6yjy4r851sx80b8ls6rv4cf3z"; depends=[robustbase survival]; }; +RobustEM = derive { name="RobustEM"; version="1.0"; sha256="1li9r3bk7zhpxljgqvr2zila8nb05nasvlzqlswwgi9443i740zi"; depends=[doParallel e1071 ellipse foreach ggplot2 mvtnorm]; }; RobustRankAggreg = derive { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; -RockFab = derive { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[rgl]; }; +RockFab = derive { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; Rook = derive { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; RootsExtremaInflections = derive { name="RootsExtremaInflections"; version="1.0"; sha256="1vcbjxx1yfla71fmmf5w8dqp0vqw93dxsjsvz0vj28bfqmkmh554"; depends=[]; }; -Rothermel = derive { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[GA ftsa]; }; +Rothermel = derive { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; }; RoughSetKnowledgeReduction = derive { name="RoughSetKnowledgeReduction"; version="0.1"; sha256="0zn6y2rp78vay9zwijpzhjpyq1gmcsa13m9fcsxkd1p2c8g5rbmf"; depends=[]; }; -RoughSets = derive { name="RoughSets"; version="1.2-1"; sha256="06bykfd26qdll0xadvvp0lljcibg613xi02gq5q8x3h0l9qa4c2x"; depends=[Rcpp Rcpp]; }; +RoughSets = derive { name="RoughSets"; version="1.2-1"; sha256="06bykfd26qdll0xadvvp0lljcibg613xi02gq5q8x3h0l9qa4c2x"; depends=[Rcpp]; }; Rpdb = derive { name="Rpdb"; version="2.2"; sha256="0gf6qab05a3ky8skbbjiadizi1gs4pcw3zp25qj5gn82lb6382pd"; depends=[rgl]; }; Rphylip = derive { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; +Rphylopars = derive { name="Rphylopars"; version="0.1.1"; sha256="04qd6zzgjgrfnv3ffv3jzlcl4ilfb67fxza49qq4rzinxc2s392b"; depends=[ape doBy geiger mvnmle phylolm phytools Rcpp RcppArmadillo]; }; Rpoppler = derive { name="Rpoppler"; version="0.0-1"; sha256="01zsbm538yhwm1cyz5j6x2ngz05yqj16yxyvyxqhn6jp8d0885jh"; depends=[]; }; -Rquake = derive { name="Rquake"; version="2.3-1"; sha256="0xb8j76jjv6k3r8nzjxdddic4rq1yj7qsh85asl38qwj7483cyc4"; depends=[RPMG RSEIS GEOmap MBA minpack_lm rgl cda]; }; +Rquake = derive { name="Rquake"; version="2.3-1"; sha256="0xb8j76jjv6k3r8nzjxdddic4rq1yj7qsh85asl38qwj7483cyc4"; depends=[cda GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; Rramas = derive { name="Rramas"; version="0.1-4"; sha256="191rm2ylvf3ffc9i4wpjvfbsinmw7s1m0wcq24j4qs4fxg8qqzyq"; depends=[diagram]; }; -Rrdrand = derive { name="Rrdrand"; version="0.1-10"; sha256="1j72v44scmghm29jxjdy0651qlkhsnrb3bb5qff82451mbd17bzb"; depends=[]; }; -Rsampletrees = derive { name="Rsampletrees"; version="0.1"; sha256="02wh99nxlhyrivr655825nqcl3w0mvppnmvc9yrkdbkjw0l1zsjd"; depends=[haplo_stats ape]; }; +Rrdrand = derive { name="Rrdrand"; version="0.1-14"; sha256="18ry07pi9iwskbxcimvp91fgpvrlaf44z0hp7k90dnyaa8qpbwjx"; depends=[]; }; +Rsampletrees = derive { name="Rsampletrees"; version="0.1"; sha256="02wh99nxlhyrivr655825nqcl3w0mvppnmvc9yrkdbkjw0l1zsjd"; depends=[ape haplo_stats]; }; Rserve = derive { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; }; -RsimMosaic = derive { name="RsimMosaic"; version="1.0.2"; sha256="0d5z5dffi2prz0r31x08c8gw83448bhkma5mzcmrdlg6kx5y7dp8"; depends=[jpeg fields RANN]; }; +RsimMosaic = derive { name="RsimMosaic"; version="1.0.2"; sha256="0d5z5dffi2prz0r31x08c8gw83448bhkma5mzcmrdlg6kx5y7dp8"; depends=[fields jpeg RANN]; }; Rsolnp = derive { name="Rsolnp"; version="1.15"; sha256="10w9gd1l62r638sh00fbgcpinsyyanfrqjdskrpk7z70fnyvwqm2"; depends=[truncnorm]; }; Rsomoclu = derive { name="Rsomoclu"; version="1.4.1"; sha256="0yr0nsm2b7wg1x57db9zclqnqqbmhyax9vgw13ynqirq2ysxxsg6"; depends=[Rcpp]; }; -Rssa = derive { name="Rssa"; version="0.13"; sha256="1prcivlwxky4h33ybky7n3wpn4vj1wm898ifsrhs1j9ywla1m2zf"; depends=[svd forecast lattice]; }; +Rssa = derive { name="Rssa"; version="0.13"; sha256="1prcivlwxky4h33ybky7n3wpn4vj1wm898ifsrhs1j9ywla1m2zf"; depends=[forecast lattice svd]; }; Rsundials = derive { name="Rsundials"; version="1.6"; sha256="0vrvxsznbclgls4jljc59lyli6cw9k1a3wapfrs6xbkqi8865iif"; depends=[]; }; -Rsymphony = derive { name="Rsymphony"; version="0.1-19"; sha256="0m9xbyp4hxz9rbc8nd7q0fwzgl6126iv0sxwifamxkc9z8vr86js"; depends=[]; }; -Rtsne = derive { name="Rtsne"; version="0.9"; sha256="1b3ilfirlhmbv1914rwnj9mamn6clzi86csp3szfwg93gk23yymn"; depends=[Rcpp Rcpp]; }; +Rsymphony = derive { name="Rsymphony"; version="0.1-20"; sha256="10l3z9b51c8xsdfnscwn6g868xn84pfw3dlyj3vrsw3vs7qbi0gl"; depends=[]; }; +Rtsne = derive { name="Rtsne"; version="0.10"; sha256="14270gg0fp3imq9rafqj56ld56kzby7yyf5rg9z0wlimm7s72hy5"; depends=[Rcpp]; }; Rttf2pt1 = derive { name="Rttf2pt1"; version="1.3.3"; sha256="16bnhrg86rzi4g4zf235m1g8amyhcwxpw0wgcxynfiinm2fl4y1n"; depends=[]; }; -Ruchardet = derive { name="Ruchardet"; version="0.0-3"; sha256="0dgldi6fgp949c3455m9b4q6crqv530jph210xzph41vgw8a2q2v"; depends=[Rcpp Rcpp]; }; +Rtts = derive { name="Rtts"; version="0.3.1"; sha256="1zgrkj4y7267d1n8iw1q3pgf2lmmklkslf5211kl7v788zxqr9c5"; depends=[RCurl]; }; +Ruchardet = derive { name="Ruchardet"; version="0.0-3"; sha256="0dgldi6fgp949c3455m9b4q6crqv530jph210xzph41vgw8a2q2v"; depends=[Rcpp]; }; Runiversal = derive { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive { name="Runuran"; version="0.21.0"; sha256="1p33z9h2zj6fx42rlq6yajd6lwvzy4a1a5gs67dz5k1zbza8avw0"; depends=[]; }; -RunuranGUI = derive { name="RunuranGUI"; version="0.1"; sha256="0wm91mzgd01qjinj94fr53m0gkxjvx7yjhmwbkrxsjn6mjklq72l"; depends=[Runuran rvgtest gWidgets gWidgetsRGtk2 cairoDevice]; }; -Rvcg = derive { name="Rvcg"; version="0.11"; sha256="0id732zhncy6x47qdbyddcm3f8l1r4j53ya4qj3zcf81q15dadw0"; depends=[Rcpp Rcpp RcppEigen]; }; +RunuranGUI = derive { name="RunuranGUI"; version="0.1"; sha256="0wm91mzgd01qjinj94fr53m0gkxjvx7yjhmwbkrxsjn6mjklq72l"; depends=[cairoDevice gWidgets gWidgetsRGtk2 Runuran rvgtest]; }; +Rvcg = derive { name="Rvcg"; version="0.11"; sha256="0id732zhncy6x47qdbyddcm3f8l1r4j53ya4qj3zcf81q15dadw0"; depends=[Rcpp RcppEigen]; }; Rvmmin = derive { name="Rvmmin"; version="2013-11.12"; sha256="1ljzydvizbbv0jv5lbfinypkixfy7zsvplisb866f8w45amd152a"; depends=[optextras]; }; Rwave = derive { name="Rwave"; version="2.4"; sha256="1ynj6higx0j6iv033lx8h3i9hlg5b53nl2gv6fwjny4ygm8b1mjm"; depends=[]; }; Rwinsteps = derive { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; }; -RxCEcolInf = derive { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[MASS MCMCpack mvtnorm lattice]; }; -RxnSim = derive { name="RxnSim"; version="1.0.1"; sha256="17agz3kw7pj4mpl25y1n8l9lqfj63wn70rqpdkcpnx7j6s6933vx"; depends=[rJava fingerprint data_table rcdk]; }; +RxCEcolInf = derive { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[lattice MASS MCMCpack mvtnorm]; }; +RxnSim = derive { name="RxnSim"; version="1.0.1"; sha256="17agz3kw7pj4mpl25y1n8l9lqfj63wn70rqpdkcpnx7j6s6933vx"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive { name="Ryacas"; version="0.2-12.1"; sha256="18dpnr6kj0a8f2jcbj9f6ahd0mg7bm1qm8dcs1wh8kmjl3klr1y8"; depends=[XML]; }; -Rz = derive { name="Rz"; version="0.9-1"; sha256="1cpsmfxijrfx06ydpjzbaak7gkad4jjk1ph9453l9zly1cwzgspj"; depends=[foreign memisc psych ggplot2 RGtk2 formatR]; }; -SAENET = derive { name="SAENET"; version="1.0"; sha256="0mnzv1a3xmbf4w9mgsi2kf20kyhcsadaih63wb0zvraqv5ijdd31"; depends=[autoencoder neuralnet]; }; +Rz = derive { name="Rz"; version="0.9-1"; sha256="1cpsmfxijrfx06ydpjzbaak7gkad4jjk1ph9453l9zly1cwzgspj"; depends=[foreign formatR ggplot2 memisc psych RGtk2]; }; +SAENET = derive { name="SAENET"; version="1.1"; sha256="13mfmmjqbkdr6j48smdlqvb83dkb34kx3i16gx0gmmafk3avdaxx"; depends=[autoencoder neuralnet]; }; SAFD = derive { name="SAFD"; version="0.4"; sha256="1zbja8bgva2j24ks4m14hbf4s0n674lj89nfxkkmwrljzsmjrjhv"; depends=[]; }; SAM = derive { name="SAM"; version="1.0.5"; sha256="1fki43bp6kan6ls2rd6vrp1mcwvz92wzcr7x6sjirbmr03smcypr"; depends=[]; }; SAMUR = derive { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; @@ -1876,30 +1920,29 @@ SAPP = derive { name="SAPP"; version="1.0.4"; sha256="0a86vz390v2g5lz1r33qrmhgva SASPECT = derive { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmixed = derive { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; -SASxport = derive { name="SASxport"; version="1.5.0"; sha256="0sgxpjv9ilz2zb13kkb0fqjfbamrczxpy9rwvfhh46bmx4i038iq"; depends=[chron Hmisc]; }; SAVE = derive { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; }; SBRect = derive { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; -SBSA = derive { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp Rcpp RcppArmadillo]; }; +SBSA = derive { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; }; SCBmeanfd = derive { name="SCBmeanfd"; version="1.1"; sha256="0pcyrnzlnlyn4v3lyv7pv01v2lh4vig1x4x8g98lpccpi1bimd4z"; depends=[boot KernSmooth]; }; SCEPtER = derive { name="SCEPtER"; version="0.2-1"; sha256="19sphwcsj2z05dvpmz7vgxykzyghkfn79jwqvk6d66daman679mv"; depends=[MASS]; }; SCEPtERbinary = derive { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; }; -SCGLR = derive { name="SCGLR"; version="2.0.2"; sha256="1g8vgmlsc88g00rf3pxqszli4r9v3r4md6vq5lxa7j9wn28c7rp1"; depends=[Matrix Formula expm ggplot2 pROC]; }; +SCGLR = derive { name="SCGLR"; version="2.0.2"; sha256="1g8vgmlsc88g00rf3pxqszli4r9v3r4md6vq5lxa7j9wn28c7rp1"; depends=[expm Formula ggplot2 Matrix pROC]; }; SCI = derive { name="SCI"; version="1.0-1"; sha256="1m5a15a4n0zjqykq38pyw9133g2ih4ykbgak8c8khq8p0isnl8qb"; depends=[fitdistrplus lmomco]; }; SCMA = derive { name="SCMA"; version="1.1.1"; sha256="1jbx4fkixm31zdlfx65xxdzpf77dzpqazy1l6qyjz7q672s2vidd"; depends=[]; }; SCORER2 = derive { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; }; SCRT = derive { name="SCRT"; version="1.1.1"; sha256="02sndf5r1y27pgkw4wd9bhz7jhzk3cv78hp3xl222phjznjf2lzi"; depends=[]; }; SCVA = derive { name="SCVA"; version="1.1.1"; sha256="1n660pml288ia4x18kjbrcx0n1cnasdxhl6pymh1nzxm4ai2hinc"; depends=[]; }; SCperf = derive { name="SCperf"; version="1.0"; sha256="1v9l7d9lil2gy5bw6i7bzc24808m063xaw2spl005j0a9rh4ag41"; depends=[]; }; -SDD = derive { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc sm tseries rpanel rgl]; }; -SDDE = derive { name="SDDE"; version="1.0.0"; sha256="1vd96w6qjy7ak85gj1c255fb0ifaffp79k6swqnvskvkq2cc524m"; depends=[igraph doParallel foreach iterators]; }; +SDD = derive { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; +SDDE = derive { name="SDDE"; version="1.0.0"; sha256="1vd96w6qjy7ak85gj1c255fb0ifaffp79k6swqnvskvkq2cc524m"; depends=[doParallel foreach igraph iterators]; }; SDMTools = derive { name="SDMTools"; version="1.1-221"; sha256="1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"; depends=[R_utils]; }; SDaA = derive { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; SE_IGE = derive { name="SE.IGE"; version="1.0"; sha256="0gx3kdsdl3rjms6fxabxz51z84r9mcy4934l2g43ifrxbyphnias"; depends=[]; }; SEAsic = derive { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECP = derive { name="SECP"; version="0.1-4"; sha256="0a4j0ggrbs0jzcph70hc4f5alln4kdn2mrkp3jbh321a6494kwl1"; depends=[SPSL]; }; SEER2R = derive { name="SEER2R"; version="1.0"; sha256="0lk0kkp8sv3nl19zwqd7449mmjxsj3pqpzdmqf70qf8xh2pqyvzd"; depends=[]; }; -SEERaBomb = derive { name="SEERaBomb"; version="2015.1"; sha256="1pab5088pjhsx0lwh2xgm7hril0qpb0jprwm61d8c30bgrrqxni9"; depends=[RSQLite LaF dplyr rgl XLConnect Rcpp reshape2 mgcv DBI Rcpp]; }; -SEL = derive { name="SEL"; version="1.0-2"; sha256="1nrk0fx6ff330abq8askvp0790xnfv00m3sraqcr32hciw6ks421"; depends=[quadprog lattice]; }; +SEERaBomb = derive { name="SEERaBomb"; version="2015.1"; sha256="1pab5088pjhsx0lwh2xgm7hril0qpb0jprwm61d8c30bgrrqxni9"; depends=[DBI dplyr LaF mgcv Rcpp reshape2 rgl RSQLite XLConnect]; }; +SEL = derive { name="SEL"; version="1.0-2"; sha256="1nrk0fx6ff330abq8askvp0790xnfv00m3sraqcr32hciw6ks421"; depends=[lattice quadprog]; }; SEMID = derive { name="SEMID"; version="0.1"; sha256="1bxdjdyqlvxz339jdgw90qi6kvfhjdmga38vhfl3ldlxfv2s9gfk"; depends=[igraph]; }; SEMModComp = derive { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; }; SETPath = derive { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; }; @@ -1909,42 +1952,43 @@ SGL = derive { name="SGL"; version="1.1"; sha256="1wc430jqn3li102zpfmyyavfbab7x7 SGP = derive { name="SGP"; version="1.2-0.0"; sha256="0v4ljhvfrvl6izprcrw8w36474fjz0v1kpcsg0sx32359amd3zxz"; depends=[Cairo colorspace data_table doParallel foreach gridBase iterators jsonlite plyr quantreg reshape2 RSQLite sn]; }; SGPdata = derive { name="SGPdata"; version="8.0-0.0"; sha256="0g25s2wcj47394fm16maygafnynizma3mgb3r65b5p9c27swk4v8"; depends=[]; }; SHIP = derive { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; -SID = derive { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[pcalg igraph Matrix]; }; +SID = derive { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; SII = derive { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; }; -SIMMS = derive { name="SIMMS"; version="1.0.1"; sha256="08kl9kzxqmzlacs8jfys0w7rngx93mlj4k1g8wzg4hmnlmic8l3k"; depends=[survival MASS glmnet]; }; +SIMMS = derive { name="SIMMS"; version="1.0.1"; sha256="08kl9kzxqmzlacs8jfys0w7rngx93mlj4k1g8wzg4hmnlmic8l3k"; depends=[glmnet MASS survival]; }; SIN = derive { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; -SINGLE = derive { name="SINGLE"; version="1.3"; sha256="0wd7jzys51rnwr5rhf2llpygqxydjrv0dill19v8sz9w0madkil4"; depends=[flsa igraph dse Matrix]; }; +SINGLE = derive { name="SINGLE"; version="1.3"; sha256="0wd7jzys51rnwr5rhf2llpygqxydjrv0dill19v8sz9w0madkil4"; depends=[dse flsa igraph Matrix]; }; SIS = derive { name="SIS"; version="0.7-5"; sha256="197zf4s4f5wm8sl9h5vxwywmml7n05fwqlxbldn6wkpxix7gx0xm"; depends=[glmnet ncvreg survival]; }; -SKAT = derive { name="SKAT"; version="1.0.7"; sha256="0f8ln37871qsnxfcfcrnq91krcgwd85cz6g0p78px4yg3g4jwsn3"; depends=[]; }; +SKAT = derive { name="SKAT"; version="1.0.9"; sha256="030fhs25kmnkzx98mbl8xa5j8jzb821jmw9j675kkyi41w3dzk8c"; depends=[]; }; SLC = derive { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; }; SLHD = derive { name="SLHD"; version="2.1-1"; sha256="0y3ilxd0phmks8zkmpgw7p5zrkwq4k95h976cwk58pavvhfwj9kb"; depends=[]; }; -SLOPE = derive { name="SLOPE"; version="0.1.1"; sha256="1v58jcd60i7hhs8wirdfqr1sskdrynnwcnqsr3q19vgnj4x1dn8f"; depends=[Rcpp Rcpp]; }; +SLOPE = derive { name="SLOPE"; version="0.1.1"; sha256="1v58jcd60i7hhs8wirdfqr1sskdrynnwcnqsr3q19vgnj4x1dn8f"; depends=[Rcpp]; }; SMC = derive { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; }; SMCP = derive { name="SMCP"; version="1.1.3"; sha256="0ksx2ibz849vhrz2px9p7z8hlgvspz7kxhadvhk5mhkfbhrnpdf0"; depends=[]; }; SMCRM = derive { name="SMCRM"; version="0.0-3"; sha256="1x06w00sdijhg5h1s61q4ym5wgk97pw9md6api7if2cxjv7h5zcy"; depends=[]; }; -SMFI5 = derive { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[ggplot2 reshape corpcor]; }; +SMFI5 = derive { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[corpcor ggplot2 reshape]; }; SMIR = derive { name="SMIR"; version="0.02"; sha256="02q8m5m8lcfrpi78p3kajkps8wiir3jwyqc54j9vfx8aj6mk1v71"; depends=[]; }; -SML = derive { name="SML"; version="0.1"; sha256="0pdj7321wy50v5l23hknlm30kp8cfgn072pbbifyp8qzmk0hyd8h"; depends=[glmnet Matrix lattice]; }; +SML = derive { name="SML"; version="0.1"; sha256="0pdj7321wy50v5l23hknlm30kp8cfgn072pbbifyp8qzmk0hyd8h"; depends=[glmnet lattice Matrix]; }; SMNCensReg = derive { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; }; SMR = derive { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; SMVar = derive { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; SNFtool = derive { name="SNFtool"; version="2.2"; sha256="1d84ybsi91mr3ma4jzmr9606hg1q00yg0dn50vkjnyda50igcb1c"; depends=[heatmap_plus]; }; SNPMClust = derive { name="SNPMClust"; version="1.0"; sha256="1vyag8axrl888qhjsbv7g84hzfsnvxh5ccdcdriamy50c2chkji8"; depends=[MASS mclust]; }; -SNPassoc = derive { name="SNPassoc"; version="1.9-2"; sha256="113byj8zbg6xyxb1qzm76sqfyk3fap0sd90691zzm1x2pbfnb3mh"; depends=[haplo_stats survival mvtnorm]; }; -SNPmaxsel = derive { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[mvtnorm combinat]; }; -SNPtools = derive { name="SNPtools"; version="1.1"; sha256="0l29kiqz4048x7amxx1qzkaw2xnd6lpdsdp5nq3rck9amx2hw64a"; depends=[]; }; +SNPassoc = derive { name="SNPassoc"; version="1.9-2"; sha256="113byj8zbg6xyxb1qzm76sqfyk3fap0sd90691zzm1x2pbfnb3mh"; depends=[haplo_stats mvtnorm survival]; }; +SNPmaxsel = derive { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; +SNPtools = derive { name="SNPtools"; version="1.1"; sha256="0l29kiqz4048x7amxx1qzkaw2xnd6lpdsdp5nq3rck9amx2hw64a"; depends=[Biostrings GenomicRanges IRanges Rsamtools]; }; SNSequate = derive { name="SNSequate"; version="1.1-1"; sha256="1jgpjws5apysp55pwy3x8mbzy4zjvv39anp6j2x4lgczh5nf49b6"; depends=[magic]; }; SOAR = derive { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; -SOD = derive { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dvc5apdzs5hpf6xrlfg863pk"; depends=[Rcpp Rcpp]; }; -SODC = derive { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic ppls psych MASS]; }; +SOD = derive { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dvc5apdzs5hpf6xrlfg863pk"; depends=[Rcpp]; }; +SODC = derive { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic MASS ppls psych]; }; SOLOMON = derive { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; }; -SOMbrero = derive { name="SOMbrero"; version="1.0"; sha256="10d2fakjkfk3p4dfh0cw1sp7i95f7lqdvz8b7x7sc5pg82dpffy7"; depends=[knitr igraph wordcloud scatterplot3d RColorBrewer shiny]; }; +SOMbrero = derive { name="SOMbrero"; version="1.0"; sha256="10d2fakjkfk3p4dfh0cw1sp7i95f7lqdvz8b7x7sc5pg82dpffy7"; depends=[igraph knitr RColorBrewer scatterplot3d shiny wordcloud]; }; +SOPIE = derive { name="SOPIE"; version="1.4"; sha256="0kmzw0plr5bhc65g7aggf8g1i38aw9v2fw7x4vgdgb7zi5qmn5mx"; depends=[circular]; }; SOR = derive { name="SOR"; version="0.22"; sha256="1njwlsvdnwxidvwrx18h6h4dhrsdgy0fikkhn20pip42qqwd96gz"; depends=[Matrix]; }; SOUP = derive { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; SPA3G = derive { name="SPA3G"; version="1.0"; sha256="15f38imwqn1zifym2821q7xysvws9vhlif4g16w0pnvk0wlhyb92"; depends=[]; }; SPACECAP = derive { name="SPACECAP"; version="1.1.0"; sha256="11szdq7sqr8ldwz7apbf1dv5mh43rbyb7dkivms58s5623xrq3sm"; depends=[coda]; }; -SPARQL = derive { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[XML RCurl]; }; +SPARQL = derive { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; SPAr = derive { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; SPECIES = derive { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; SPEI = derive { name="SPEI"; version="1.6"; sha256="0mbz4nydnzwypfbi1d9fjy09x6133q096qbfrc913dbidzkvfpqv"; depends=[lmomco]; }; @@ -1952,38 +1996,38 @@ SPIAssay = derive { name="SPIAssay"; version="1.0.0"; sha256="1rwa2iicwdm7z8khln SPIn = derive { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; }; SPMS = derive { name="SPMS"; version="2.0"; sha256="150kb4gjiksp3kc7p9j5zqc4955rq4fb27as71z89h23mkswz5r5"; depends=[Matrix]; }; SPODT = derive { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; -SPOT = derive { name="SPOT"; version="1.0.5543"; sha256="0y8rj0wxy8sdk7si9k11i4pb96vp1q78h48ihs4r7d383zykk827"; depends=[rpart emoa twiddler rgl AlgDesign randomForest rsm MASS mco]; }; -SPREDA = derive { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[survival nlme]; }; +SPOT = derive { name="SPOT"; version="1.0.5543"; sha256="0y8rj0wxy8sdk7si9k11i4pb96vp1q78h48ihs4r7d383zykk827"; depends=[AlgDesign emoa MASS mco randomForest rgl rpart rsm twiddler]; }; +SPREDA = derive { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[nlme survival]; }; SPRT = derive { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; SPSL = derive { name="SPSL"; version="0.1-8"; sha256="1jg1nfhz8qml1wwqa4d0w7vkdmbgdy5xlfqx0h2pdw2z8iij3xxc"; depends=[]; }; SPmlficmcm = derive { name="SPmlficmcm"; version="1.3"; sha256="0igybzc6fx6yd8xq06909vml4zwwzm4sl5xpds1292lgv3y3zdgb"; depends=[nleqslv]; }; -SQDA = derive { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[PDSCE mvtnorm]; }; +SQDA = derive { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; }; SQN = derive { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; }; SQUAREM = derive { name="SQUAREM"; version="2014.8-1"; sha256="17fn37da4zslbfq5h4f3dfwyw1dxj5y2rgly3vjl2c4k5bnwxxqw"; depends=[]; }; SRCS = derive { name="SRCS"; version="1.0"; sha256="0aha9fqdigvsx8dvck4y2yb8c7v58rivz50z0xwi0bhwzdddx52f"; depends=[]; }; -SRRS = derive { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[tcltk2 gtools]; }; -SSDforR = derive { name="SSDforR"; version="1.4.9"; sha256="1ka6zy77ml4kccfqjszvijh9dvlhzcp7fhsd2zsirsn6sdz0wrp0"; depends=[psych TTR MASS TSA]; }; -SSN = derive { name="SSN"; version="1.1.5"; sha256="1iymq6zzs3zfbjkz7h2ss8djdzvw2b3n68qazvw8vnrnkq3iyzry"; depends=[RSQLite sp MASS igraph maptools lattice BH]; }; +SRRS = derive { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; }; +SSDforR = derive { name="SSDforR"; version="1.4.9"; sha256="1ka6zy77ml4kccfqjszvijh9dvlhzcp7fhsd2zsirsn6sdz0wrp0"; depends=[MASS psych TSA TTR]; }; +SSN = derive { name="SSN"; version="1.1.5"; sha256="1iymq6zzs3zfbjkz7h2ss8djdzvw2b3n68qazvw8vnrnkq3iyzry"; depends=[BH igraph lattice maptools MASS RSQLite sp]; }; SSrat = derive { name="SSrat"; version="1.0"; sha256="1qpsdfdngsgxx3mqgn4avl65w4v5v4jwsh1nnxzfn9iqi9mg4bhi"; depends=[plyr sna]; }; SSsimple = derive { name="SSsimple"; version="0.6.4"; sha256="0p7d4hx7mhn5myq8ajcij6hhg79rjxigk5v8z93yfdw4gjcb5wad"; depends=[mvtnorm]; }; -STAR = derive { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[survival mgcv R2HTML gss codetools]; }; -STEPCAM = derive { name="STEPCAM"; version="1.0"; sha256="0lgikdj0mghz5hjm3rlrnnddjhvf9cmm0hwklbdyl3h816gq1jci"; depends=[vcd FD gtools MASS]; }; +STAR = derive { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[codetools gss mgcv R2HTML survival]; }; +STEPCAM = derive { name="STEPCAM"; version="1.0"; sha256="0lgikdj0mghz5hjm3rlrnnddjhvf9cmm0hwklbdyl3h816gq1jci"; depends=[FD gtools MASS vcd]; }; STPGA = derive { name="STPGA"; version="1.0"; sha256="1kqxzjrxf194n006dr3h5kprb4l7qy8bgm2n6251p0sswpvr70j1"; depends=[]; }; SUE = derive { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; SVMMaj = derive { name="SVMMaj"; version="0.2-2"; sha256="01njc7drq01r3364081dv9gn37vrql52zbrb60gd559f3jshqx3m"; depends=[kernlab MASS]; }; -SVMMatch = derive { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp Rcpp RcppArmadillo]; }; +SVMMatch = derive { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; SWATmodel = derive { name="SWATmodel"; version="0.5.9"; sha256="1i48g9nbjfn30ppwyzyz3k181nscv4wx773l8mzfdwhx0nlv4kyj"; depends=[EcoHydRology]; }; -SWMPr = derive { name="SWMPr"; version="2.0.0"; sha256="1gnjz5p76xpw4rpish4d7vr3r9f880mw5fb27bnc6b408vy0781d"; depends=[ggplot2 zoo data_table httr ggmap gridExtra maptools oce dplyr reshape2 tictoc tidyr wq XML]; }; -SYNCSA = derive { name="SYNCSA"; version="1.3.2"; sha256="1m057lhfaf0n35rs3sipia04qgkp04hv7wf7rvnr7bhzic9f4vg3"; depends=[vegan mice FD]; }; +SWMPr = derive { name="SWMPr"; version="2.0.0"; sha256="1gnjz5p76xpw4rpish4d7vr3r9f880mw5fb27bnc6b408vy0781d"; depends=[data_table dplyr ggmap ggplot2 gridExtra httr maptools oce reshape2 tictoc tidyr wq XML zoo]; }; +SYNCSA = derive { name="SYNCSA"; version="1.3.2"; sha256="1m057lhfaf0n35rs3sipia04qgkp04hv7wf7rvnr7bhzic9f4vg3"; depends=[FD mice vegan]; }; Sabermetrics = derive { name="Sabermetrics"; version="1.0"; sha256="1x35h1ffy6jnsak13vb1kcsbmh3hpass19gqic8grk0c3g1dvv6y"; depends=[]; }; Sample_Size = derive { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; SampleSizeMeans = derive { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; SampleSizeProportions = derive { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; }; SamplerCompare = derive { name="SamplerCompare"; version="1.2.6"; sha256="1n94fp6frawlbxcnvi0v6lhgs3yyc47lj1r46y3jg6zb9z3va3fa"; depends=[mvtnorm]; }; SamplingStrata = derive { name="SamplingStrata"; version="1.0-3"; sha256="16nrcv5hbbvn4rgckzagi84i7h49bd878mnpknlzmzr5ykzywsay"; depends=[]; }; -Scale = derive { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[psych Hmisc MASS]; }; -SciViews = derive { name="SciViews"; version="0.9-5"; sha256="199waafpn0ndg7szwfhw2jlgcx1f0pv7j0vix2vzz60knwm698xb"; depends=[MASS ellipse]; }; -SciencesPo = derive { name="SciencesPo"; version="1.02.12"; sha256="0v947xjfwyidl2fa6i7drvv9vnskz06kq4rmz46qzns7g0lwfjnq"; depends=[ggplot2 foreign MASS data_table lubridate xtable]; }; +Scale = derive { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[Hmisc MASS psych]; }; +SciViews = derive { name="SciViews"; version="0.9-5"; sha256="199waafpn0ndg7szwfhw2jlgcx1f0pv7j0vix2vzz60knwm698xb"; depends=[ellipse MASS]; }; +SciencesPo = derive { name="SciencesPo"; version="1.02.12"; sha256="0v947xjfwyidl2fa6i7drvv9vnskz06kq4rmz46qzns7g0lwfjnq"; depends=[data_table foreign ggplot2 lubridate MASS xtable]; }; ScoreGGUM = derive { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; }; ScottKnott = derive { name="ScottKnott"; version="1.2-5"; sha256="1ywwhdghcy30mp2nhsk2yhgb37nrdmb9yan5vvzsg66bchc3xgll"; depends=[]; }; ScrabbleScore = derive { name="ScrabbleScore"; version="1.0"; sha256="19vgaxnhvqsbllqxfbnhnar2j4g0fkxi7rfsmkks2bd2py81x04m"; depends=[]; }; @@ -1992,29 +2036,30 @@ SearchTrees = derive { name="SearchTrees"; version="0.5.2"; sha256="11p81x1klkmx SegCorr = derive { name="SegCorr"; version="1.0"; sha256="1fyrnhbifvc2y2n6r0zg5yq0qcjzws62ynwqgc0mbvzax3n82dhm"; depends=[cghseg]; }; Segmentor3IsBack = derive { name="Segmentor3IsBack"; version="1.8"; sha256="00m6fvx6s8mz477c8b4dmgdh52jf6jx1lcqzf84l90b1xw93qnv7"; depends=[]; }; Sejong = derive { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6dhl23y16yxqzyhqqayvcm98q3l77nf"; depends=[]; }; -SeleMix = derive { name="SeleMix"; version="0.9.1"; sha256="04gxgja35qs4k66iil014dzgl5bkx0qhr9w4v7qpmwv2bb07jwz3"; depends=[mvtnorm Ecdat xtable]; }; -SelvarMix = derive { name="SelvarMix"; version="1.0"; sha256="0yysmf854xz5l0lf2x0hw0qxbrdhgfrcx5ggw8n4pjfv553p38ni"; depends=[Rcpp glasso Rmixmod Rcpp RcppArmadillo]; }; +SeleMix = derive { name="SeleMix"; version="0.9.1"; sha256="04gxgja35qs4k66iil014dzgl5bkx0qhr9w4v7qpmwv2bb07jwz3"; depends=[Ecdat mvtnorm xtable]; }; +SelvarMix = derive { name="SelvarMix"; version="1.0"; sha256="0yysmf854xz5l0lf2x0hw0qxbrdhgfrcx5ggw8n4pjfv553p38ni"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; SemiCompRisks = derive { name="SemiCompRisks"; version="2.0"; sha256="0in3pv66nhb0ar4xfxskvf24c7bqkr9ik069a4nynwnc3idpsq32"; depends=[]; }; -SemiMarkov = derive { name="SemiMarkov"; version="1.4.1"; sha256="048hmbcmhqkvqw8nbzm0136mc9w7b27jy8q9r3rvc3banh854d1m"; depends=[numDeriv MASS Rsolnp]; }; -SemiPar = derive { name="SemiPar"; version="1.0-4.1"; sha256="05gnk4s0d6276rmnyyv6gy1wpkji3sw563n8l7hmi9qqa19ij22w"; depends=[MASS cluster nlme]; }; -SemiParBIVProbit = derive { name="SemiParBIVProbit"; version="3.3"; sha256="12zjpyl79kx750xgra06zbw5vnaq8mis39cm8672w3d9giy2fxr5"; depends=[mgcv mvtnorm magic VineCopula VGAM survey trust Matrix sn]; }; -SemiParSampleSel = derive { name="SemiParSampleSel"; version="1.2"; sha256="1k9xmby8hy4k0qn7pjj0rypxj4iqb206ixv92bz7ga0q8zd0nxbr"; depends=[copula mgcv mvtnorm gamlss_dist magic trust VGAM Matrix]; }; +SemiMarkov = derive { name="SemiMarkov"; version="1.4.1"; sha256="048hmbcmhqkvqw8nbzm0136mc9w7b27jy8q9r3rvc3banh854d1m"; depends=[MASS numDeriv Rsolnp]; }; +SemiPar = derive { name="SemiPar"; version="1.0-4.1"; sha256="05gnk4s0d6276rmnyyv6gy1wpkji3sw563n8l7hmi9qqa19ij22w"; depends=[cluster MASS nlme]; }; +SemiParBIVProbit = derive { name="SemiParBIVProbit"; version="3.4"; sha256="038k5vvgrk20n2cbji8qrp9nkg0ck5dcbxnd7wc5hy1l780g4k5g"; depends=[magic mgcv survey trust VGAM VineCopula]; }; +SemiParSampleSel = derive { name="SemiParSampleSel"; version="1.2"; sha256="1k9xmby8hy4k0qn7pjj0rypxj4iqb206ixv92bz7ga0q8zd0nxbr"; depends=[copula gamlss_dist magic Matrix mgcv mvtnorm trust VGAM]; }; SenSrivastava = derive { name="SenSrivastava"; version="2012-04-0"; sha256="0ki0kl18cj8lkad6q48piyvslkirs8y5rnfa8bvgjxsisxg2ahhp"; depends=[]; }; SensitivityCaseControl = derive { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; }; -SensoMineR = derive { name="SensoMineR"; version="1.20"; sha256="1qw97cixndg2h29bbpssl0rqag3w8im4nm9964lr7r012y5wdqhx"; depends=[FactoMineR cluster KernSmooth]; }; -SensusR = derive { name="SensusR"; version="1.0"; sha256="1b5yrb3iiijr7x0r4ga5dlx6yqqk4bvmh1377655s6c7j36sn1xd"; depends=[jsonlite lubridate rworldmap plyr sp]; }; -SeqFeatR = derive { name="SeqFeatR"; version="0.1.7"; sha256="195pkpk9sh99v01mk827axsynwaccygx19i1x0h0ma7bsqlmw1qc"; depends=[tcltk2 plotrix ape plyr phangorn calibrate ggplot2]; }; -SeqGrapheR = derive { name="SeqGrapheR"; version="0.4.8.3"; sha256="03plwa3sc1pg34p1szbz3d0z8y53w7iqm7qn9q6fj72rsnk5spxc"; depends=[igraph rggobi gWidgets gWidgetsRGtk2 cairoDevice]; }; -Sequential = derive { name="Sequential"; version="1.1"; sha256="1fr4n6qbxwj6hs01h07wdj5v4c7af5q8ccnm33yzcrx845qf8fiv"; depends=[]; }; -SetMethods = derive { name="SetMethods"; version="1.0"; sha256="0zizvrzyk01w4ncazvifmjm4h5zrpsf6n68n11sc8f5kzny9ia48"; depends=[lattice betareg lattice betareg]; }; +SensoMineR = derive { name="SensoMineR"; version="1.20"; sha256="1qw97cixndg2h29bbpssl0rqag3w8im4nm9964lr7r012y5wdqhx"; depends=[cluster FactoMineR KernSmooth]; }; +SensusR = derive { name="SensusR"; version="1.0"; sha256="1b5yrb3iiijr7x0r4ga5dlx6yqqk4bvmh1377655s6c7j36sn1xd"; depends=[jsonlite lubridate plyr rworldmap sp]; }; +SeqFeatR = derive { name="SeqFeatR"; version="0.1.7"; sha256="195pkpk9sh99v01mk827axsynwaccygx19i1x0h0ma7bsqlmw1qc"; depends=[ape Biostrings calibrate ggplot2 phangorn plotrix plyr qvalue tcltk2 widgetTools]; }; +SeqGrapheR = derive { name="SeqGrapheR"; version="0.4.8.3"; sha256="03plwa3sc1pg34p1szbz3d0z8y53w7iqm7qn9q6fj72rsnk5spxc"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; }; +Sequential = derive { name="Sequential"; version="2.0"; sha256="0dndy4a1waxgwj43gq1zb6cqwvrafcr729hhr7qckw5crcmm0iph"; depends=[]; }; +SetMethods = derive { name="SetMethods"; version="1.0"; sha256="0zizvrzyk01w4ncazvifmjm4h5zrpsf6n68n11sc8f5kzny9ia48"; depends=[betareg lattice]; }; +ShapeSelectForest = derive { name="ShapeSelectForest"; version="1.0"; sha256="0jy40aql33xwl4s7y2s3wb6yig4vr6ly6fhz7hn2d59b8428p04q"; depends=[coneproj raster rgdal]; }; SharpeR = derive { name="SharpeR"; version="0.1501"; sha256="138faypgrfph48wvz600l20ypqzxdir4q43bl9s7vndysya3vsnl"; depends=[matrixcalc]; }; ShrinkCovMat = derive { name="ShrinkCovMat"; version="1.1.0"; sha256="1v2rr97wz5521cjy41j5vdqq29xd7696pc1rzw4angsfjrq3fnh4"; depends=[]; }; SiZer = derive { name="SiZer"; version="0.1-4"; sha256="0kiwvxrfa2b49r2iab5v2aysc2yzk5ck3h41f2hr0vq5pdnz0qy5"; depends=[boot]; }; SightabilityModel = derive { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; }; -Sim_DiffProc = derive { name="Sim.DiffProc"; version="2.9"; sha256="1cq168ga4p70hgx7rsm9rvam8b0wvjivqp2nsprk39i864j9sr91"; depends=[scatterplot3d rgl]; }; -SimComp = derive { name="SimComp"; version="2.2"; sha256="07gmlbwvv07kq3z7gq2jxlank011c0cqh8zwwp4pzf061d3gjdm6"; depends=[mvtnorm multcomp mratios]; }; +Sim_DiffProc = derive { name="Sim.DiffProc"; version="2.9"; sha256="1cq168ga4p70hgx7rsm9rvam8b0wvjivqp2nsprk39i864j9sr91"; depends=[rgl scatterplot3d]; }; +SimComp = derive { name="SimComp"; version="2.2"; sha256="07gmlbwvv07kq3z7gq2jxlank011c0cqh8zwwp4pzf061d3gjdm6"; depends=[mratios multcomp mvtnorm]; }; SimCorMultRes = derive { name="SimCorMultRes"; version="1.3.0"; sha256="0r3d91x9srzsa0g6p3jlzplpsrprbg11kv6fsbbh47pz02fvi8mc"; depends=[evd]; }; -SimRAD = derive { name="SimRAD"; version="0.95"; sha256="1l4y39d05h5f2q609i73p07h093r9yca11dqw5iq1d7skwxcvf01"; depends=[]; }; +SimRAD = derive { name="SimRAD"; version="0.95"; sha256="1l4y39d05h5f2q609i73p07h093r9yca11dqw5iq1d7skwxcvf01"; depends=[Biostrings ShortRead]; }; SimSeq = derive { name="SimSeq"; version="1.3.0"; sha256="0xkiiwk52sv8vivd4qsvzgjbw8q0csy0d45diym2mc9aq9nhf5dq"; depends=[fdrtool]; }; SimilarityMeasures = derive { name="SimilarityMeasures"; version="1.4"; sha256="1w4klcln4hy9vcik9csg7b3b8kk4raxgckwfrhqg089d80xbqsxj"; depends=[]; }; Simile = derive { name="Simile"; version="1.3.3"; sha256="1izyjp18m1inac3svkf59z3lddrv44m7pdkhisgkr987xs8gdch4"; depends=[]; }; @@ -2023,35 +2068,35 @@ SimplicialCubature = derive { name="SimplicialCubature"; version="1.0"; sha256=" Simpsons = derive { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; }; SimuChemPC = derive { name="SimuChemPC"; version="1.3"; sha256="06sxknaykikcgbw7qbbw1risg0sbaisb68vhfd7cl6sg0327dznk"; depends=[rcdk]; }; SimultAnR = derive { name="SimultAnR"; version="1.1"; sha256="0jvmxwmbnx14h27b576dg9mw3c2z0w3m82f51f25zd1darcl06bj"; depends=[]; }; -SixSigma = derive { name="SixSigma"; version="0.8-1"; sha256="15jdr10a7a6wv50vz9y6qcrbhnddl8zh4j4d48xrarrqbjy6l4p7"; depends=[qcc lattice ggplot2 reshape2 nortest testthat]; }; +SixSigma = derive { name="SixSigma"; version="0.8-1"; sha256="15jdr10a7a6wv50vz9y6qcrbhnddl8zh4j4d48xrarrqbjy6l4p7"; depends=[ggplot2 lattice nortest qcc reshape2 testthat]; }; SkewHyperbolic = derive { name="SkewHyperbolic"; version="0.3-2"; sha256="10vilra5z884xinqkvk7ryi4nsq5zxlyn5qh23lsajba3b3qwhaw"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; -Skillings_Mack = derive { name="Skillings.Mack"; version="1.0-2"; sha256="1spf77ix9d264r126hnrjm7z8fw19v1bk5pqhqcf6lm93zlcgh8i"; depends=[MASS matrixcalc gtools]; }; +Skillings_Mack = derive { name="Skillings.Mack"; version="1.0-2"; sha256="1spf77ix9d264r126hnrjm7z8fw19v1bk5pqhqcf6lm93zlcgh8i"; depends=[gtools MASS matrixcalc]; }; Sleuth2 = derive { name="Sleuth2"; version="1.0-7"; sha256="1zav2g1yqc6bvzap4r5xwy9abkdj8iswivj5y2lylc25nkxwcswg"; depends=[]; }; Sleuth3 = derive { name="Sleuth3"; version="0.1-8"; sha256="02qbigg75ckyg65620bv88ggs4d9z3vivxd5j76x8hzg5lkk31yj"; depends=[]; }; -SmarterPoland = derive { name="SmarterPoland"; version="1.5"; sha256="0qa31z0wgl8bgc3ihgbfdmp1ang3wyy4qylj81zxh1yn2zxx5fr0"; depends=[rjson ggplot2 httr htmltools]; }; +SmarterPoland = derive { name="SmarterPoland"; version="1.5"; sha256="0qa31z0wgl8bgc3ihgbfdmp1ang3wyy4qylj81zxh1yn2zxx5fr0"; depends=[ggplot2 htmltools httr rjson]; }; SmithWilsonYieldCurve = derive { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; }; SmoothHazard = derive { name="SmoothHazard"; version="1.2.3"; sha256="0p6hnq782d5qwmq6ak2rmbzx84lrsy02lr303gg3y0vln5i2myyn"; depends=[lava mvtnorm prodlim]; }; SnowballC = derive { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; }; SoDA = derive { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; -SocialMediaMineR = derive { name="SocialMediaMineR"; version="0.1"; sha256="113nyjncl5yi61hz8i7k60b3f0f9a5vyrd3s72nbmc44cnvr8fci"; depends=[RCurl jsonlite httr]; }; -SocialNetworks = derive { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp Rcpp]; }; +SocialMediaMineR = derive { name="SocialMediaMineR"; version="0.1"; sha256="113nyjncl5yi61hz8i7k60b3f0f9a5vyrd3s72nbmc44cnvr8fci"; depends=[httr jsonlite RCurl]; }; +SocialNetworks = derive { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; }; SocialPosition = derive { name="SocialPosition"; version="1.0"; sha256="0aqx6raskybxwavl7366klhagclq0zlklr5sd0l9h6cz530h3azq"; depends=[]; }; SoftClustering = derive { name="SoftClustering"; version="1.1502"; sha256="1pgg9mjpfw55m3ny726vx5wl8gwsdkrxv8xzgmy3aqdlwzhh4bwz"; depends=[]; }; SoilR = derive { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; }; -SortableHTMLTables = derive { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[testthat brew]; }; +SortableHTMLTables = derive { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[brew testthat]; }; SoundexBR = derive { name="SoundexBR"; version="1.1"; sha256="1rhmwbf7687lgwwx1qldljb9j7qj7hcaypawlchmys61ny9500wl"; depends=[]; }; SparseGrid = derive { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; SparseM = derive { name="SparseM"; version="1.6"; sha256="1296snm3481259xwhj97vffwjb2v8367ivf2g5amd4pzqzwx6p1k"; depends=[]; }; -SparseTSCGM = derive { name="SparseTSCGM"; version="2.1.1"; sha256="0xr3l049kssi7k074wggvc96p2zlca076j2hwpwpmna42xl3dmqv"; depends=[glasso longitudinal flare MASS mvtnorm network abind]; }; -SpatPCA = derive { name="SpatPCA"; version="1.0.0.1"; sha256="1j2zhm0xlm5w1p4yhg60qwa0r2hai7nv1n25ski5x2nfnpb5fiij"; depends=[fields Rcpp Rcpp RcppArmadillo]; }; -SpatialEpi = derive { name="SpatialEpi"; version="1.2.1"; sha256="02mvahpbrlcnxmf272fk46wykv9s2lcjqd5yhd80dfs78qjwly77"; depends=[sp Rcpp MASS maptools spdep Rcpp RcppArmadillo]; }; -SpatialExtremes = derive { name="SpatialExtremes"; version="2.0-0"; sha256="0fjh4cjzljwzxk4bhcrff9wnkskaiawbj7z6swrj1xl35mq4dljx"; depends=[]; }; +SparseTSCGM = derive { name="SparseTSCGM"; version="2.1.1"; sha256="0xr3l049kssi7k074wggvc96p2zlca076j2hwpwpmna42xl3dmqv"; depends=[abind flare glasso longitudinal MASS mvtnorm network]; }; +SpatPCA = derive { name="SpatPCA"; version="1.0.0.2"; sha256="0f8byi4zhrjj8fdka93r22kbjjqgkx3p06a65sppgvq65v8lff0l"; depends=[fields Rcpp RcppArmadillo]; }; +SpatialEpi = derive { name="SpatialEpi"; version="1.2.1"; sha256="02mvahpbrlcnxmf272fk46wykv9s2lcjqd5yhd80dfs78qjwly77"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; +SpatialExtremes = derive { name="SpatialExtremes"; version="2.0-2"; sha256="0ywybk9gziy2hzb1ks88q4rzs3lzzy6y3fzhja2s39ngg195hi6l"; depends=[fields maps]; }; SpatialNP = derive { name="SpatialNP"; version="1.1-1"; sha256="108gxk0gbbjck9bgxvqb9h216ww21lmh2by0hrhzwx5r63hhcbmd"; depends=[]; }; SpatialPack = derive { name="SpatialPack"; version="0.2-3"; sha256="1gs0x3wj3hj663m6kszwhy3ibcx0lrslr127miy1rhz8683ij71c"; depends=[]; }; SpatialPosition = derive { name="SpatialPosition"; version="0.9"; sha256="0w09yrn32pis4w3hkbghkgwpyy7mnnzzkhhp289xl738lymv207a"; depends=[raster sp]; }; -SpatialTools = derive { name="SpatialTools"; version="0.5.8"; sha256="18zchr8bfjqdr9j6vh6365mhrj2n0ns1ixvmas5s0ppiim59jl7j"; depends=[spBayes Rcpp Rcpp RcppArmadillo]; }; -SpatialVx = derive { name="SpatialVx"; version="0.2-2"; sha256="16qww58az1523pk8b4b5hzqnpb8djgvph2ykf6bjp8zz5qdfyhjs"; depends=[spatstat fields smoothie smatr turboEM distillery maps boot CircStats fastcluster waveslim]; }; -SpatioTemporal = derive { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[Matrix MASS]; }; +SpatialTools = derive { name="SpatialTools"; version="0.5.8"; sha256="18zchr8bfjqdr9j6vh6365mhrj2n0ns1ixvmas5s0ppiim59jl7j"; depends=[Rcpp RcppArmadillo spBayes]; }; +SpatialVx = derive { name="SpatialVx"; version="0.2-4"; sha256="0nm3mripq1fiqn7ydl854azwpl1sdh2ls8gj1k432xsvi02m05y3"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; +SpatioTemporal = derive { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[MASS Matrix]; }; SpecHelpers = derive { name="SpecHelpers"; version="0.1.6"; sha256="1h14a1rsk7x5qafn4hcpmannkdf2wdphkzaa3b6nbb9jqjs1szi0"; depends=[gsubfn]; }; SpeciesMix = derive { name="SpeciesMix"; version="0.3.1"; sha256="0wl15k00d7n9pmnp1kr28p05z4vrziprcdndw77kwkcgv51cvllk"; depends=[MASS numDeriv]; }; SpecsVerification = derive { name="SpecsVerification"; version="0.3-0"; sha256="19vr4xlx9gx0ph6k2kf59bpbhmzncm1mmzz7ld3pjc7k4jfba3np"; depends=[]; }; @@ -2059,95 +2104,101 @@ SpherWave = derive { name="SpherWave"; version="1.2.2"; sha256="1wd9pql97m1zl0ax SphericalCubature = derive { name="SphericalCubature"; version="1.0.1"; sha256="0j592zvs07yc6amahlxgdw0k1vqr89gvcq22vcwzkx62igvlf6pv"; depends=[cubature]; }; SphericalK = derive { name="SphericalK"; version="1.1"; sha256="18h1k0gy65jvzfpsda0ifv3nn3pvzx5ifllxbwh0my6w75c4biqn"; depends=[]; }; SportsAnalytics = derive { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; -StAMPP = derive { name="StAMPP"; version="1.3"; sha256="1igf6arp7glihkv60zc7c0zwfqaf5kcm2d1xr856fj194zxww9ad"; depends=[pegas doParallel foreach adegenet]; }; -StMoSim = derive { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[RcppParallel Rcpp RcppParallel Rcpp]; }; -StableEstim = derive { name="StableEstim"; version="2.0"; sha256="080khfix88j4656hmdy9l0xpbk9zzw7z7d7f6yvwsbalk3ag18i5"; depends=[Matrix stabledist testthat numDeriv xtable fBasics MASS]; }; -Stack = derive { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[plyr stringr ff ffbase bit]; }; +StAMPP = derive { name="StAMPP"; version="1.3"; sha256="1igf6arp7glihkv60zc7c0zwfqaf5kcm2d1xr856fj194zxww9ad"; depends=[adegenet doParallel foreach pegas]; }; +StMoMo = derive { name="StMoMo"; version="0.2.0"; sha256="1pddlwf3kns9fzmqddfak6bir0mc1i4bv9cswj5pbhpavsd08r1c"; depends=[fanplot fields forecast gnm MASS reshape2 rootSolve]; }; +StMoSim = derive { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[Rcpp RcppParallel]; }; +StableEstim = derive { name="StableEstim"; version="2.0"; sha256="080khfix88j4656hmdy9l0xpbk9zzw7z7d7f6yvwsbalk3ag18i5"; depends=[fBasics MASS Matrix numDeriv stabledist testthat xtable]; }; +Stack = derive { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; }; StanHeaders = derive { name="StanHeaders"; version="2.6.0-10"; sha256="0bw11myc16ddi1qhh8dcsf8dqg6dcp1wjbyrp5p98dcc1rym7kmg"; depends=[]; }; StandardizeText = derive { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; }; -StatDA = derive { name="StatDA"; version="1.6.9"; sha256="01bjygis14b3yfsfkjbvy0zlhjxysjf46cfcw8p4a4lwik3qp03b"; depends=[geoR sgeostat cluster e1071 MASS MBA mgcv rgl robustbase xtable]; }; +StatDA = derive { name="StatDA"; version="1.6.9"; sha256="01bjygis14b3yfsfkjbvy0zlhjxysjf46cfcw8p4a4lwik3qp03b"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat xtable]; }; StatDataML = derive { name="StatDataML"; version="1.0-25"; sha256="05s9kbrjl2wsfccgav34b02m06q62r3iyjd0ndr6xcqlw9x2w2ya"; depends=[XML]; }; -StatMatch = derive { name="StatMatch"; version="1.2.3"; sha256="10y9xaclxrw65v3k9qwdm7lvvf1kxpssc9nx0f15m8xkw5hhm7pa"; depends=[proxy clue survey RANN lpSolve]; }; +StatMatch = derive { name="StatMatch"; version="1.2.3"; sha256="10y9xaclxrw65v3k9qwdm7lvvf1kxpssc9nx0f15m8xkw5hhm7pa"; depends=[clue lpSolve proxy RANN survey]; }; StatMeasures = derive { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; }; -StatMethRank = derive { name="StatMethRank"; version="1.0"; sha256="0mcvwn1f3hylvyg46vigc5wnvhhig5v01ag3y9rap32v85f308zh"; depends=[MASS rjags pmr]; }; -StatRank = derive { name="StatRank"; version="0.0.4"; sha256="0s0jc4hvrry9a884fqfk3gp1w4ww5wif2kh3m0f22nn7qb49if9p"; depends=[truncdist plyr]; }; -Statomica = derive { name="Statomica"; version="1.0"; sha256="0x60n1d7wxfd013k6jjzvfi2mqgr52fd8ylk3yhm3907002jnh1g"; depends=[distr fBasics]; }; -Stem = derive { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[mvtnorm MASS]; }; -StereoMorph = derive { name="StereoMorph"; version="1.4"; sha256="0xar1vx05q6dbfs9jmdbj7cz6jfrckhd8cm2ml922xg4zxrg23cf"; depends=[bezier rjson shiny Rcpp jpeg tiff png Rcpp]; }; +StatMethRank = derive { name="StatMethRank"; version="1.0"; sha256="0mcvwn1f3hylvyg46vigc5wnvhhig5v01ag3y9rap32v85f308zh"; depends=[MASS pmr rjags]; }; +StatRank = derive { name="StatRank"; version="0.0.4"; sha256="0s0jc4hvrry9a884fqfk3gp1w4ww5wif2kh3m0f22nn7qb49if9p"; depends=[plyr truncdist]; }; +Statomica = derive { name="Statomica"; version="1.0"; sha256="0x60n1d7wxfd013k6jjzvfi2mqgr52fd8ylk3yhm3907002jnh1g"; depends=[Biobase distr fBasics multtest]; }; +Stem = derive { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; +StereoMorph = derive { name="StereoMorph"; version="1.4"; sha256="0xar1vx05q6dbfs9jmdbj7cz6jfrckhd8cm2ml922xg4zxrg23cf"; depends=[bezier jpeg png Rcpp rjson shiny tiff]; }; Storm = derive { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive { name="StrainRanking"; version="1.1"; sha256="0q6k90if74320mrs2ccq2izynylr8zakciwbc2c6ms0v57aalwic"; depends=[]; }; -StratSel = derive { name="StratSel"; version="1.1"; sha256="0l08v71qmd170027y5vjnvgfm8kqvgaqrpms9msxhv8g5974kla8"; depends=[MASS memisc Formula mnormt]; }; -StreamMetabolism = derive { name="StreamMetabolism"; version="1.1.1"; sha256="1r9p6awf3a2d08w9rdlggkwlfhksn14xbhdhdnmxz79ym5mgdd8f"; depends=[zoo chron maptools]; }; +StratSel = derive { name="StratSel"; version="1.1"; sha256="0l08v71qmd170027y5vjnvgfm8kqvgaqrpms9msxhv8g5974kla8"; depends=[Formula MASS memisc mnormt]; }; +StreamMetabolism = derive { name="StreamMetabolism"; version="1.1.1"; sha256="1r9p6awf3a2d08w9rdlggkwlfhksn14xbhdhdnmxz79ym5mgdd8f"; depends=[chron maptools zoo]; }; StressStrength = derive { name="StressStrength"; version="1.0.1"; sha256="15sgdisgz8zcq4i9z4zm7isr5ckyd7bk6yl1g7a5kngams282ipx"; depends=[]; }; SubCultCon = derive { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; -SubLasso = derive { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet psych gplots]; }; +SubLasso = derive { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; +SubpathwayGMir = derive { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; }; Sunder = derive { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; }; SunterSampling = derive { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; }; SuperLearner = derive { name="SuperLearner"; version="2.0-15"; sha256="1sk45419awk8aahylmqbardx8lglx0d7hrwc0k2prnksk5r3549l"; depends=[nnls]; }; SuppDists = derive { name="SuppDists"; version="1.1-9.1"; sha256="1jqsv1lzjblc7sdb4gh8pkww9ar174bpbjl7mmdi59fixymwz87s"; depends=[]; }; -Surrogate = derive { name="Surrogate"; version="0.1-5"; sha256="0g66yzbirkxs6f69zbfaw61ki25qgdxwkd3zhmymmgxhbix77n11"; depends=[MASS nlme msm lme4 rgl lattice latticeExtra]; }; -SurvCorr = derive { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[survival fields]; }; +Surrogate = derive { name="Surrogate"; version="0.1-61"; sha256="0jifjns0v22risy783a0s71v6sn165wn7w6a47sb7dsdimrvnn9d"; depends=[lattice latticeExtra lme4 MASS msm nlme rgl]; }; +SurvCorr = derive { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; SurvLong = derive { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; }; -SurvRegCensCov = derive { name="SurvRegCensCov"; version="1.3"; sha256="1sl17x984ww07aakz6dambn5kznw4hvj4b8ahy2r4mr6wf2dpg5a"; depends=[survival numDeriv]; }; +SurvRegCensCov = derive { name="SurvRegCensCov"; version="1.3"; sha256="1sl17x984ww07aakz6dambn5kznw4hvj4b8ahy2r4mr6wf2dpg5a"; depends=[numDeriv survival]; }; Survgini = derive { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; }; -SvyNom = derive { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[survival rms Hmisc survey]; }; +SvyNom = derive { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; SweaveListingUtils = derive { name="SweaveListingUtils"; version="0.6.2"; sha256="0n15gkiil9rlb0dhnkfimhcs09av35b7qx79iba7bx3y7spvzaqy"; depends=[startupmsg]; }; SwissAir = derive { name="SwissAir"; version="1.1.4"; sha256="1avc32q7nbwjkcbml7z05car6khv1ghcz3miw0krm8i53w032c6f"; depends=[]; }; SyNet = derive { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; SynchWave = derive { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; -SynergizeR = derive { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RJSONIO RCurl]; }; +SynergizeR = derive { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RCurl RJSONIO]; }; Synth = derive { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; -TAM = derive { name="TAM"; version="1.6-0"; sha256="0wca6ry29k422q8x4qwpd9myc6xnd2p2z05dqlmb2gwzgbj3wcbk"; depends=[CDM MASS Rcpp mirt lavaan WrightMap tensor sfsmisc GPArotation psych mvtnorm msm lattice plyr Rcpp RcppArmadillo]; }; +TAM = derive { name="TAM"; version="1.7-1"; sha256="1zsgdilxh7j7ay74a5id7iwm0mz3vf1rcgw7fvclic1ndwwj68z3"; depends=[CDM GPArotation lattice lavaan MASS mirt msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; }; TANOVA = derive { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; TAQMNGR = derive { name="TAQMNGR"; version="2015.2-1"; sha256="0j7qb15xy4g4ff0cmyjyz4lsalaxxf6zdwbq49j3y80ld0pvwhbk"; depends=[Rcpp]; }; -TBEST = derive { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[signal fdrtool]; }; -TBSSurvival = derive { name="TBSSurvival"; version="1.2"; sha256="12ipgffympqjjg8l9gbich5pgz0pqr5g07b0il26rr721xiyxk5v"; depends=[normalp survival mcmc R_utils coda Rsolnp BMS]; }; +TBEST = derive { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; }; +TBSSurvival = derive { name="TBSSurvival"; version="1.2"; sha256="12ipgffympqjjg8l9gbich5pgz0pqr5g07b0il26rr721xiyxk5v"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; TDA = derive { name="TDA"; version="1.3"; sha256="1f9f5v8c0ynxz8p4kr9w08c4icf0840h7iay8k1ydh5zmr43d7lk"; depends=[FNN igraph scales]; }; +TDAmapper = derive { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDCor = derive { name="TDCor"; version="0.1-1"; sha256="001rmwi2v4vy1b2d7wwvvca4xnkizz8dmys3q3xbjv7wrfxyvai8"; depends=[deSolve]; }; -TDD = derive { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[signal RSEIS pracma]; }; -TDMR = derive { name="TDMR"; version="1.3"; sha256="0bbd2an18ayxaxprsjqrybb877lkk74dpxbvbv7qdwc1ivqm8g96"; depends=[SPOT twiddler testit adabag]; }; +TDD = derive { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; +TDMR = derive { name="TDMR"; version="1.3"; sha256="0bbd2an18ayxaxprsjqrybb877lkk74dpxbvbv7qdwc1ivqm8g96"; depends=[adabag SPOT testit twiddler]; }; TDboost = derive { name="TDboost"; version="1.1"; sha256="1pyqssqxkr9bwyz4h1l5isbb78asmvddy20vyxq8snxra2r06hbf"; depends=[lattice]; }; -TED = derive { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vhkr1f3vlym2hqs0pq0lnsl4g0"; depends=[foreach zoo fields animation geoR RcppArmadillo]; }; +TED = derive { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vhkr1f3vlym2hqs0pq0lnsl4g0"; depends=[animation fields foreach geoR RcppArmadillo zoo]; }; TEEReg = derive { name="TEEReg"; version="1.0"; sha256="1xpr4m8yamifjx7njb7dyqv51rsbjym9c5avflf69r9sazf3n503"; depends=[]; }; TEQR = derive { name="TEQR"; version="5.0-0"; sha256="04r26qzps7nnvs4s2xpvjf6q456wa29alhsds07xvyqhi972xhs6"; depends=[]; }; TERAplusB = derive { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; }; TESS = derive { name="TESS"; version="1.2.1"; sha256="15wrbbhrzj66j0z6xhnbf560qg0dzm1yqfbpmx070n3lsa2rdyij"; depends=[ape coda deSolve]; }; -TExPosition = derive { name="TExPosition"; version="2.6.10"; sha256="12rgijlclaipwjjiyng7nwilzixdy6lsvncigcg0vjydhgk97jn1"; depends=[prettyGraphs ExPosition]; }; +TExPosition = derive { name="TExPosition"; version="2.6.10"; sha256="12rgijlclaipwjjiyng7nwilzixdy6lsvncigcg0vjydhgk97jn1"; depends=[ExPosition prettyGraphs]; }; TFDEA = derive { name="TFDEA"; version="0.9.8.3"; sha256="0qg4nhlqqj7hc8lg732zz8klbbp3yksnq8q8n4ml3jz8gadrpyj7"; depends=[lpSolveAPI]; }; -TFMPvalue = derive { name="TFMPvalue"; version="0.0.5"; sha256="13bfcwfiyl61cv2ma23fcmv2cvbsyzdbg2pl6l6zg39l6scxf9na"; depends=[Rcpp Rcpp]; }; +TFMPvalue = derive { name="TFMPvalue"; version="0.0.5"; sha256="13bfcwfiyl61cv2ma23fcmv2cvbsyzdbg2pl6l6zg39l6scxf9na"; depends=[Rcpp]; }; TFX = derive { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; }; TH_data = derive { name="TH.data"; version="1.0-6"; sha256="1kx6z8lj1l2vxi7vhx47sly65grjkm3wvrbr3nl52q1vdmy1xsgm"; depends=[]; }; -TIMP = derive { name="TIMP"; version="1.12.1"; sha256="06zjpa9j4sr62f2lspa75i7n8xcf4xdgxq2zjbzsx4f0p0nf5ymj"; depends=[fields vcd gplots colorspace gclus nnls deSolve minpack_lm MASS]; }; -TInPosition = derive { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[prettyGraphs TExPosition ExPosition InPosition]; }; -TKF = derive { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[expm numDeriv ape phytools phangorn]; }; +TIMP = derive { name="TIMP"; version="1.12.1"; sha256="06zjpa9j4sr62f2lspa75i7n8xcf4xdgxq2zjbzsx4f0p0nf5ymj"; depends=[colorspace deSolve fields gclus gplots MASS minpack_lm nnls vcd]; }; +TInPosition = derive { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; +TKF = derive { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; }; +TMDb = derive { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; }; +TOC = derive { name="TOC"; version="0.0-2"; sha256="0zkwbjyi5dc6y0fzmwkbyrf32h0r5vhxxz67zjrhqc06vyasai8w"; depends=[bit raster rgdal]; }; TPmsm = derive { name="TPmsm"; version="1.2.0"; sha256="1670b9g6sqlg5xk76x77cph1wzp44yp957sn8px5k7kkb1hgi0pl"; depends=[KernSmooth]; }; -TR8 = derive { name="TR8"; version="0.9.13"; sha256="07wrqwa5gf1l1y3b07mganr5xkzxdzrh6lrv7gf01m9b7bsz564m"; depends=[RCurl XML taxize plyr rappdirs gWidgets gWidgetstcltk gdata]; }; +TR8 = derive { name="TR8"; version="0.9.13"; sha256="07wrqwa5gf1l1y3b07mganr5xkzxdzrh6lrv7gf01m9b7bsz564m"; depends=[gdata gWidgets gWidgetstcltk plyr rappdirs RCurl taxize XML]; }; TRAMPR = derive { name="TRAMPR"; version="1.0-7"; sha256="135ylhijhpdxpznfdbdzwfsvy8bhw1yx28c3520a3lyrqvinpawg"; depends=[]; }; TRD = derive { name="TRD"; version="1.0"; sha256="1xj3ns9phiz4i70ky2p1q1cr3h6iq2i3dywnap6gqaq0fqmiq2fh"; depends=[Rlab]; }; -TROM = derive { name="TROM"; version="1.0"; sha256="1pr5n6bgjrn60f95395p2x8c2h1q3sx6a7448m0xi0a51wa016xp"; depends=[lattice openxlsx gtools RColorBrewer gplots]; }; -TRSbook = derive { name="TRSbook"; version="1.0.1"; sha256="1w2yl5pchw2vn9l3qnm1ra9mjy946i5xsxh5n5xdvrcj2kak50x5"; depends=[xtable RColorBrewer gdata IndependenceTests]; }; +TROM = derive { name="TROM"; version="1.0"; sha256="1pr5n6bgjrn60f95395p2x8c2h1q3sx6a7448m0xi0a51wa016xp"; depends=[AnnotationDbi gplots gtools lattice openxlsx RColorBrewer topGO]; }; +TRSbook = derive { name="TRSbook"; version="1.0.1"; sha256="1w2yl5pchw2vn9l3qnm1ra9mjy946i5xsxh5n5xdvrcj2kak50x5"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; TSA = derive { name="TSA"; version="1.01"; sha256="0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"; depends=[leaps locfit mgcv tseries]; }; TSEN = derive { name="TSEN"; version="1.0"; sha256="1pn313g2ylbjc37rqcakd797vffnh7v0rgg1xl5wjyvcgmm5mxix"; depends=[ncdf]; }; TSHRC = derive { name="TSHRC"; version="0.1-3"; sha256="18ygg7bqwg1pdqi52l1lf33gcd277895rlf5853yzh7ln2ivssmi"; depends=[]; }; -TSMySQL = derive { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[TSdbi DBI tframe TSsql RMySQL]; }; -TSP = derive { name="TSP"; version="1.1-0"; sha256="0d38n6z531jcg34q39fv0qsmccjbx5yil14fw5pmvyympyjsf5kq"; depends=[foreach]; }; -TSPostgreSQL = derive { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[TSdbi DBI tframe tframePlus TSsql RPostgreSQL]; }; +TSMySQL = derive { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[DBI RMySQL tframe TSdbi TSsql]; }; +TSP = derive { name="TSP"; version="1.1-1"; sha256="0wwzmkgfy55dba9jl3mpbyqciia71px0x0s6708k8kz9vr03m2zs"; depends=[foreach]; }; +TSPostgreSQL = derive { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[DBI RPostgreSQL tframe tframePlus TSdbi TSsql]; }; TSPred = derive { name="TSPred"; version="2.0"; sha256="0p4msk12n8jc1ss8p7m15rxd0ip7v83c5p78v26nk5dz21a4xprp"; depends=[forecast]; }; -TSSQLite = derive { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[TSdbi DBI tframe tframePlus TSsql RSQLite]; }; +TSSQLite = derive { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; }; TSTutorial = derive { name="TSTutorial"; version="1.2.3"; sha256="0hpk6k3lc72p8pdz5aad04lcjsz9k443h5gs09dc3i10wqw3yhxs"; depends=[MASS]; }; -TSclust = derive { name="TSclust"; version="1.2.3"; sha256="0m04svw4z2rhvzyckn8l4pg4rmwfn8xlzd9k839c47ldbzgb4z6l"; depends=[wmtsa pdc cluster locpol KernSmooth dtw longitudinalData]; }; -TScompare = derive { name="TScompare"; version="2015.4-1"; sha256="0jmxnrbsdg368f29bp70rc9i88si5zjblbcn8rcjyn2k9vpd3q2f"; depends=[TSdbi tframe tfplot DBI]; }; -TSdata = derive { name="TSdata"; version="2015.4-1"; sha256="0h8gxgfal4ak2jmxmql02qpq4lcgj8m263aq9h83l5gmvzd173q7"; depends=[]; }; +TSclust = derive { name="TSclust"; version="1.2.3"; sha256="0m04svw4z2rhvzyckn8l4pg4rmwfn8xlzd9k839c47ldbzgb4z6l"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc wmtsa]; }; +TScompare = derive { name="TScompare"; version="2015.4-1"; sha256="0jmxnrbsdg368f29bp70rc9i88si5zjblbcn8rcjyn2k9vpd3q2f"; depends=[DBI tfplot tframe TSdbi]; }; +TSdata = derive { name="TSdata"; version="2015.4-2"; sha256="1c0ly1gs6p3fspwvk1f6c2xgzvc7p7pkzakm44lisbyjklacnilp"; depends=[]; }; TSdbi = derive { name="TSdbi"; version="2015.1-1"; sha256="1bqxpd4g0ppm1261srgwjzghfwwl53vybkihz99azckky0539m1s"; depends=[DBI tframe]; }; -TSdist = derive { name="TSdist"; version="2.2"; sha256="1zqqy2pxjzxlj1d32d086qrkf9rlgj9vn9smzbcfix8wlgvxfi1l"; depends=[proxy zoo xts dtw TSclust KernSmooth locpol pdc longitudinalData cluster]; }; -TSfame = derive { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[TSdbi DBI tframe tframePlus fame tis]; }; -TSmisc = derive { name="TSmisc"; version="2015.1-3"; sha256="1hv1q9p7vp7pxx9s4s9w3vkif1w1xr4y656x3zaf48ijxf6c6a90"; depends=[TSdbi DBI tframe tframePlus zoo xts its tseries quantmod gdata]; }; -TSodbc = derive { name="TSodbc"; version="2015.4-1"; sha256="0m6r97gs483jg6jlmfkbzxg3jvf6q140kvpidjccj224zb1sqlcq"; depends=[TSdbi DBI tframe tframePlus TSsql RODBC]; }; -TSsdmx = derive { name="TSsdmx"; version="2015.2-2"; sha256="1xwriyg0raqd6812r6vf34dljs0cjhxls9gpal4w0bjmvmc67khb"; depends=[TSdbi DBI tframe tframePlus RJSDMX rJava]; }; -TSsql = derive { name="TSsql"; version="2015.1-2"; sha256="1hpi2cssnkzqgnaj91wrvb94fs8zpfg8hi4m1zwswzyl3az0l9sc"; depends=[DBI tframe TSdbi tframePlus zoo]; }; -TTAinterfaceTrendAnalysis = derive { name="TTAinterfaceTrendAnalysis"; version="1.5.1"; sha256="1i9p5s7xj3py8465yjjaqs2m7krjxzzqd86lkpbgzxnxjdnxcx5i"; depends=[Hmisc pastecs reshape wq e1071 timeSeries fBasics relimp multcomp nlme lubridate tcltk2]; }; -TTR = derive { name="TTR"; version="0.22-0"; sha256="0aackwmmakjcynpq4nxi8xw1x3688rkg6kypgd5jiprzzdhsz5rq"; depends=[xts xts]; }; +TSdist = derive { name="TSdist"; version="2.2"; sha256="1zqqy2pxjzxlj1d32d086qrkf9rlgj9vn9smzbcfix8wlgvxfi1l"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc proxy TSclust xts zoo]; }; +TSfame = derive { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[DBI fame tframe tframePlus tis TSdbi]; }; +TSmisc = derive { name="TSmisc"; version="2015.1-3"; sha256="1hv1q9p7vp7pxx9s4s9w3vkif1w1xr4y656x3zaf48ijxf6c6a90"; depends=[DBI gdata its quantmod tframe tframePlus TSdbi tseries xts zoo]; }; +TSodbc = derive { name="TSodbc"; version="2015.4-1"; sha256="0m6r97gs483jg6jlmfkbzxg3jvf6q140kvpidjccj224zb1sqlcq"; depends=[DBI RODBC tframe tframePlus TSdbi TSsql]; }; +TSsdmx = derive { name="TSsdmx"; version="2015.2-2"; sha256="1xwriyg0raqd6812r6vf34dljs0cjhxls9gpal4w0bjmvmc67khb"; depends=[DBI rJava RJSDMX tframe tframePlus TSdbi]; }; +TSsql = derive { name="TSsql"; version="2015.1-2"; sha256="1hpi2cssnkzqgnaj91wrvb94fs8zpfg8hi4m1zwswzyl3az0l9sc"; depends=[DBI tframe tframePlus TSdbi zoo]; }; +TTAinterfaceTrendAnalysis = derive { name="TTAinterfaceTrendAnalysis"; version="1.5.1"; sha256="1i9p5s7xj3py8465yjjaqs2m7krjxzzqd86lkpbgzxnxjdnxcx5i"; depends=[e1071 fBasics Hmisc lubridate multcomp nlme pastecs relimp reshape tcltk2 timeSeries wq]; }; +TTR = derive { name="TTR"; version="0.22-0"; sha256="0aackwmmakjcynpq4nxi8xw1x3688rkg6kypgd5jiprzzdhsz5rq"; depends=[xts]; }; +TTmoment = derive { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; }; TUWmodel = derive { name="TUWmodel"; version="0.1-4"; sha256="1xxbrcs3dddzcya15pj4k86z05vnv06fnwblfvygx0zkw0m292av"; depends=[]; }; Table1Heatmap = derive { name="Table1Heatmap"; version="1.1"; sha256="1nrabjivfsdhaqmlq365pskkrp99jqsxn8vy03mdnqn5h5zv7wvx"; depends=[colorRamps]; }; TableMonster = derive { name="TableMonster"; version="1.2"; sha256="1cl70d0svzx8nsg6kw5dv50s9d6wxqkyg39d2d4vissbpilq6arn"; depends=[xtable]; }; @@ -2156,36 +2207,36 @@ TaoTeProgramming = derive { name="TaoTeProgramming"; version="1.0"; sha256="1b36 TapeR = derive { name="TapeR"; version="0.3.2"; sha256="070zl7hqv5zprhs464gy1kmz0am58l0vig8xvdq6pbz94nrhvpj0"; depends=[nlme pracma]; }; TauP_R = derive { name="TauP.R"; version="1.1"; sha256="10sjvcv70fjrsl5nnk9gm4sy7nhwm6aaq57gr37cb10v079ykmk1"; depends=[]; }; Taxonstand = derive { name="Taxonstand"; version="1.7"; sha256="0xs2kdsd6sa5vpxajw1rkraiy27km6q4mqsdsq1yfdl1wxv7m0sl"; depends=[]; }; -TcGSA = derive { name="TcGSA"; version="0.9.8"; sha256="19gp3pj4p2svrfyviccvv13q82qj7584nck8zbba90hzv9g4xy86"; depends=[lme4 ggplot2 GSA reshape2 gtools gplots cluster stringr]; }; +TcGSA = derive { name="TcGSA"; version="0.9.8"; sha256="19gp3pj4p2svrfyviccvv13q82qj7584nck8zbba90hzv9g4xy86"; depends=[cluster ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; TeachNet = derive { name="TeachNet"; version="0.7"; sha256="1p39bsf846r7zwz4lrrv2bpyx9yrkqzrnacajwrz3jjqj6qpp6cn"; depends=[]; }; TeachingDemos = derive { name="TeachingDemos"; version="2.9"; sha256="160xch4812darv77qk2xjblm6nfnna5x2rxy335bwdsdjzcx4x9m"; depends=[]; }; TeachingSampling = derive { name="TeachingSampling"; version="3.2.2"; sha256="07c1wx7hl246kvj9ah55kdjpag8a9zbzh3jy0680w5nnv8vzsxxs"; depends=[]; }; TestScorer = derive { name="TestScorer"; version="1.7"; sha256="1rzpy4aa61l21qx2qxrmk16cxrvbygacxk4rkm766769aq2jqa09"; depends=[]; }; -TestSurvRec = derive { name="TestSurvRec"; version="1.2.1"; sha256="05f5gc8hvz09hx015jzis6ikki9c1brdq7l7a9bxm9bqbcc9f2f9"; depends=[survrec boot]; }; +TestSurvRec = derive { name="TestSurvRec"; version="1.2.1"; sha256="05f5gc8hvz09hx015jzis6ikki9c1brdq7l7a9bxm9bqbcc9f2f9"; depends=[boot survrec]; }; Thermimage = derive { name="Thermimage"; version="1.0.1"; sha256="16wpmwqfqjghhp4g5wpmgzf0ii2aa0gawcq74rfn4frfizzdy0ad"; depends=[]; }; Thinknum = derive { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; }; ThreeArmedTrials = derive { name="ThreeArmedTrials"; version="0.1-0"; sha256="1pafm8k90yv0hrk5a9adfv37087l2in0psslhkxha6mkmdh6a5f6"; depends=[MASS]; }; ThreeWay = derive { name="ThreeWay"; version="1.1.2"; sha256="1vf71im3bs2b2v05j12l8qn181kah0mch4h13n71zqik1ykly6jf"; depends=[]; }; -ThresholdROC = derive { name="ThresholdROC"; version="1.0"; sha256="1w7bjw1w09skxyc5w3d72wivljlvnck6vbchihjx7m5k6djn7pxi"; depends=[]; }; -TickExec = derive { name="TickExec"; version="1.0"; sha256="0ylmf0mxp9hnijnq9rq6l4xahzsyrh8pfjjbgzz6v77ycvzzz5sh"; depends=[]; }; +ThresholdROC = derive { name="ThresholdROC"; version="2.0"; sha256="1qnxzp8rkxm39zgs8yv2yqkzda9hkd67910ikig423zs70gb6nj7"; depends=[MASS numDeriv pROC]; }; +TickExec = derive { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; }; TiddlyWikiR = derive { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; }; Tides = derive { name="Tides"; version="1.1"; sha256="0w2xjnw2zv4s49kvzbnfvy30mfkn8hqdz6p155xm1kfqwvyb28qq"; depends=[]; }; TilePlot = derive { name="TilePlot"; version="1.3.1"; sha256="0yfzjyzc743rv5piw9mb7y0rr558hkxszgz49lya2w3i1mqvxbzy"; depends=[]; }; TimeMachine = derive { name="TimeMachine"; version="1.2"; sha256="1dz0j777wmd8mpkm2ryiahpcw6w88w429zjcw6m67pi20r1992cb"; depends=[]; }; -TimeProjection = derive { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate timeDate Matrix]; }; +TimeProjection = derive { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; TimeWarp = derive { name="TimeWarp"; version="1.0.12"; sha256="1qadaf8n8ym5nv1z328hd5wiw78f014imgd2ryvi70sh4dmzb16l"; depends=[]; }; Tinflex = derive { name="Tinflex"; version="1.0"; sha256="0zvh2nfx4kqf90mmrpdm2fzlzn7s7gs09i8zin604hqxjir6p3ny"; depends=[]; }; -TopKLists = derive { name="TopKLists"; version="1.0.3"; sha256="0687nxsddmlgyz3kwcfmcv0vj2pw91154rd1p19ivhmbvhvnhwvh"; depends=[Hmisc gplots]; }; -TraMineR = derive { name="TraMineR"; version="1.8-9"; sha256="0qawgjifz6w7gb06j9q5kbvhf8pn17922mvmgwzva5mykvqfmdic"; depends=[RColorBrewer boot]; }; -TraMineRextras = derive { name="TraMineRextras"; version="0.2.3"; sha256="0b6xh1xhmigjfj9cbk4gdpi1d131cq9ikwgdblcwwrmnrhcjgld6"; depends=[TraMineR RColorBrewer combinat survival cluster]; }; +TopKLists = derive { name="TopKLists"; version="1.0.3"; sha256="0687nxsddmlgyz3kwcfmcv0vj2pw91154rd1p19ivhmbvhvnhwvh"; depends=[gplots Hmisc]; }; +TraMineR = derive { name="TraMineR"; version="1.8-9"; sha256="0qawgjifz6w7gb06j9q5kbvhf8pn17922mvmgwzva5mykvqfmdic"; depends=[boot RColorBrewer]; }; +TraMineRextras = derive { name="TraMineRextras"; version="0.2.3"; sha256="0b6xh1xhmigjfj9cbk4gdpi1d131cq9ikwgdblcwwrmnrhcjgld6"; depends=[cluster combinat RColorBrewer survival TraMineR]; }; TrackReconstruction = derive { name="TrackReconstruction"; version="1.1"; sha256="1f2l3nshb6qrhyczw5rxqqzmsjxf0rvv3y78j8d9lv1nnd9kxzq5"; depends=[fields RColorBrewer]; }; TreatmentSelection = derive { name="TreatmentSelection"; version="1.1.2"; sha256="1mvrb72yz51gmwqlfg5gsjbi65lqk5j24agddw1br53ymdvjgzq4"; depends=[ggplot2]; }; -TreePar = derive { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape Matrix subplex TreeSim deSolve]; }; +TreePar = derive { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; TreeSim = derive { name="TreeSim"; version="2.1"; sha256="01izfzlvrak65mzwpz4bn5cansw10fvfjfvj164f5g0qghg9v84n"; depends=[ape geiger laser]; }; TreeSimGM = derive { name="TreeSimGM"; version="1.2"; sha256="0y6hadwx3apw11jy5d4al3dav3his8b4xvkv7s5d5rd92l7yrw0r"; depends=[TreeSim]; }; -TriMatch = derive { name="TriMatch"; version="0.9.4"; sha256="008mi58sv82ykvwzil229z3zq3addyn3bik0xzfajcx4h7sdmsfg"; depends=[ggplot2 scales reshape2 ez psych PSAgraphics gridExtra]; }; +TriMatch = derive { name="TriMatch"; version="0.9.4"; sha256="008mi58sv82ykvwzil229z3zq3addyn3bik0xzfajcx4h7sdmsfg"; depends=[ez ggplot2 gridExtra PSAgraphics psych reshape2 scales]; }; TrialSize = derive { name="TrialSize"; version="1.3"; sha256="1hikhw2l7d3c7cg4p7zzrgdwhy9g4rv06znpw5mc6kwinyakp75q"; depends=[]; }; -TripleR = derive { name="TripleR"; version="1.4.1"; sha256="028xvy3l72n1jhhfzv1fx1a51ya9bx008icz81ixjdwghzqr0wmi"; depends=[ggplot2 reshape2 plyr]; }; +TripleR = derive { name="TripleR"; version="1.4.1"; sha256="028xvy3l72n1jhhfzv1fx1a51ya9bx008icz81ixjdwghzqr0wmi"; depends=[ggplot2 plyr reshape2]; }; Tsphere = derive { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive { name="TukeyC"; version="1.1-5"; sha256="08s9scsd2l6wavc7qqlffjbf89vkd6xpb4iawvbqf7jh8jiyvw17"; depends=[]; }; TunePareto = derive { name="TunePareto"; version="2.4"; sha256="0pljl3q5s9yqc4ph70y66ff9ci9w8gwj8jsy8srxqkgqvahc8arf"; depends=[]; }; @@ -2194,172 +2245,177 @@ TwoCop = derive { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9 TwoStepCLogit = derive { name="TwoStepCLogit"; version="1.2.3"; sha256="0arqpfflflsydsgcrpq364vqf4sn019m03ygmpq810wa78v4r9s0"; depends=[survival]; }; UBCRM = derive { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; }; UNF = derive { name="UNF"; version="2.0.1"; sha256="1gnzj7lxfp0x5f2ws9aclzaq75gbmsqhjqi02llmihf05gq0kp23"; depends=[base64enc digest]; }; -UPMASK = derive { name="UPMASK"; version="1.0"; sha256="19krsqkz2g5b6svqp29s6i92bhlk7liv8lf7d03za848w7y2jkhq"; depends=[MASS RSQLite DBI]; }; +UPMASK = derive { name="UPMASK"; version="1.0"; sha256="19krsqkz2g5b6svqp29s6i92bhlk7liv8lf7d03za848w7y2jkhq"; depends=[DBI MASS RSQLite]; }; USAboundaries = derive { name="USAboundaries"; version="0.1.1"; sha256="18bk37lhrlp5j0496n956881zl88inliylmgh1p2nlkv4f195yd0"; depends=[assertthat dplyr ggplot2 lubridate maptools rgeos sp]; }; UScancer = derive { name="UScancer"; version="0.1-2"; sha256="0p1kxw1phqq598ljk3njznc9kmgscc8gmwdrvx1scba9rr6n61kl"; depends=[rgdal]; }; -UScensus2000cdp = derive { name="UScensus2000cdp"; version="0.03"; sha256="143hqnzdla3p31n422ddzaaa34wc6xnnhil4y53m4qydyg407700"; depends=[maptools sp foreign]; }; -UScensus2000tract = derive { name="UScensus2000tract"; version="0.03"; sha256="11ppw75k8zghj7xphx5xyl3azsdsyd142avp0la2g941w6f8l2n1"; depends=[maptools sp foreign]; }; -UScensus2010 = derive { name="UScensus2010"; version="0.11"; sha256="1q06spkh8f4ijvfg557rl3176ki4i8a1y39cyqm3v7mnzwckyj3l"; depends=[maptools sp foreign]; }; +UScensus2000cdp = derive { name="UScensus2000cdp"; version="0.03"; sha256="143hqnzdla3p31n422ddzaaa34wc6xnnhil4y53m4qydyg407700"; depends=[foreign maptools sp]; }; +UScensus2000tract = derive { name="UScensus2000tract"; version="0.03"; sha256="11ppw75k8zghj7xphx5xyl3azsdsyd142avp0la2g941w6f8l2n1"; depends=[foreign maptools sp]; }; +UScensus2010 = derive { name="UScensus2010"; version="0.11"; sha256="1q06spkh8f4ijvfg557rl3176ki4i8a1y39cyqm3v7mnzwckyj3l"; depends=[foreign maptools sp]; }; UWHAM = derive { name="UWHAM"; version="1.0"; sha256="1qaj8anaxqnx4nc6vvzda9hhhzqk9qp8q7bxm26qgia4hgascnrv"; depends=[trust]; }; Unicode = derive { name="Unicode"; version="0.1-5"; sha256="088f38qy3vympxj6n4vyvvqd4gldcfli9l8rmzgmm1rm3v195mvn"; depends=[]; }; -UsingR = derive { name="UsingR"; version="2.0-4"; sha256="0wj6cn9ijc0rkpxsy1fd104m254b997dhmvwzz0knjkh5nybm8zm"; depends=[MASS HistData Hmisc]; }; -V8 = derive { name="V8"; version="0.6"; sha256="1cr9nm5wvi3b2766fpdgihnfmn1ckrwrzyya6dchvg2lr3giba38"; depends=[Rcpp jsonlite curl Rcpp]; }; +UsingR = derive { name="UsingR"; version="2.0-4"; sha256="0wj6cn9ijc0rkpxsy1fd104m254b997dhmvwzz0knjkh5nybm8zm"; depends=[HistData Hmisc MASS]; }; +V8 = derive { name="V8"; version="0.6"; sha256="1cr9nm5wvi3b2766fpdgihnfmn1ckrwrzyya6dchvg2lr3giba38"; depends=[curl jsonlite Rcpp]; }; VAR_etp = derive { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; -VBLPCM = derive { name="VBLPCM"; version="2.4.3"; sha256="0aibjkqlc8l3f17m52ifb25s639gkydvgdj2gkijk5mk0g681qdj"; depends=[ergm sna mclust]; }; -VBmix = derive { name="VBmix"; version="0.2.17"; sha256="0fhx2vk5ffq147kfgsqjbqwgv64m7z9mbz4gchj90440ih7kyxa5"; depends=[lattice pixmap mnormt]; }; +VBLPCM = derive { name="VBLPCM"; version="2.4.3"; sha256="0aibjkqlc8l3f17m52ifb25s639gkydvgdj2gkijk5mk0g681qdj"; depends=[ergm mclust sna]; }; +VBmix = derive { name="VBmix"; version="0.2.17"; sha256="0fhx2vk5ffq147kfgsqjbqwgv64m7z9mbz4gchj90440ih7kyxa5"; depends=[lattice mnormt pixmap]; }; VCA = derive { name="VCA"; version="1.1.1"; sha256="14xm220ymg5p1m2h2xvjkbgaqfhi7dmf8fmi4zmfm5gksgf4v351"; depends=[Matrix numDeriv]; }; VDA = derive { name="VDA"; version="1.3"; sha256="063mpwbyykx4f46wzfvrgnlq73ar7i06gxr4mjzbhqcfrsybi72b"; depends=[rgl]; }; VGAM = derive { name="VGAM"; version="0.9-8"; sha256="0wizv2r1k79ifg9m0z9m2l80bshvfmajanznk5a5370ih3fih33a"; depends=[]; }; VGAMdata = derive { name="VGAMdata"; version="0.9-7"; sha256="0fkm90nbmj0gjzxmh54qbf90alcbaiz27rs0zc0i5jhh2cv716y6"; depends=[]; }; VHDClassification = derive { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIF = derive { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; -VIFCP = derive { name="VIFCP"; version="1.0"; sha256="19jpwhbw5ml46ic8mzkl0ll7qaa0slw608c790dpbch8hx1r5i7s"; depends=[]; }; -VIM = derive { name="VIM"; version="4.1.0"; sha256="15nmywg8mhknvivg9bfszif2allim5vf1hjfbfyl053jphjpax26"; depends=[colorspace data_table car robustbase sp vcd MASS nnet e1071 Rcpp Rcpp]; }; -VIMGUI = derive { name="VIMGUI"; version="0.9.0"; sha256="195lakyik597sjkq6c5v3881p35111gzmj2r5f5nr53vi6bn4pzm"; depends=[tkrplot VIM survey gWidgetsRGtk2 foreign RGtk2 Cairo Hmisc]; }; +VIGoR = derive { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; }; +VIM = derive { name="VIM"; version="4.1.0"; sha256="15nmywg8mhknvivg9bfszif2allim5vf1hjfbfyl053jphjpax26"; depends=[car colorspace data_table e1071 MASS nnet Rcpp robustbase sp vcd]; }; +VIMGUI = derive { name="VIMGUI"; version="0.9.0"; sha256="195lakyik597sjkq6c5v3881p35111gzmj2r5f5nr53vi6bn4pzm"; depends=[Cairo foreign gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; }; VLF = derive { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; VLMC = derive { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; }; VNM = derive { name="VNM"; version="4.0"; sha256="0dc2wvj8f09yrsf5lhg6djhfnkgslngs6a13g54d5q9aa4nnxm8w"; depends=[]; }; VPdtw = derive { name="VPdtw"; version="2.1-10"; sha256="1sipiqbk766czd1jxam3bc2hfq7wsn72x51j5ssn2s2q0gvpl7m1"; depends=[]; }; -VSURF = derive { name="VSURF"; version="0.8.2"; sha256="1d9irh8s49i8i9q8psmfl41jnr95wvm3libxin0ir8r297rq82z3"; depends=[randomForest rpart doParallel]; }; +VSURF = derive { name="VSURF"; version="1.0.0"; sha256="1hqn22k66v9zb2qr7sig0zgki9hbfr5442d7mlldnyj3m012m22j"; depends=[doParallel foreach randomForest rpart]; }; VaRES = derive { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; -VarSelLCM = derive { name="VarSelLCM"; version="1.0"; sha256="1i0s4kdqgfh79bk5ipd9fn6m3yl1qgn9gzn62kxx7vfiy683x0a2"; depends=[Rcpp mclust Rcpp RcppArmadillo]; }; +VarSelLCM = derive { name="VarSelLCM"; version="1.2"; sha256="1pzcadzg1snv2nkdrbhgi6scrd70cawprncm8hs82gcl3r9dscic"; depends=[Rcpp RcppArmadillo]; }; VarSwapPrice = derive { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; VariABEL = derive { name="VariABEL"; version="0.9-2"; sha256="0vlr6zxl75i49p35jxrc5fwfrb55n91hqdan2ikcix3r2k4qs5k0"; depends=[]; }; VarianceGamma = derive { name="VarianceGamma"; version="0.3-1"; sha256="0h424hdphbgi9i84bgzdwmsq05w61q8300x8f9y4szbxa5k2dnar"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; -VdgRsm = derive { name="VdgRsm"; version="1.5"; sha256="13mbv3ih6p2915wdzq4zjx7m4k37w1xddkxx6dzk1jiak2br9slj"; depends=[permute AlgDesign]; }; +VdgRsm = derive { name="VdgRsm"; version="1.5"; sha256="13mbv3ih6p2915wdzq4zjx7m4k37w1xddkxx6dzk1jiak2br9slj"; depends=[AlgDesign permute]; }; Vdgraph = derive { name="Vdgraph"; version="2.2-2"; sha256="1q8l711zbrrj4h1wmpv93nbvlg8xi6kjv22zpidkck8ncpyyla80"; depends=[]; }; VecStatGraphs2D = derive { name="VecStatGraphs2D"; version="1.7"; sha256="08f9ixpiq8s5h8h608wrs9l16xk3c1xcrvwgvm5wqm6xfkj9gpfd"; depends=[MASS]; }; -VecStatGraphs3D = derive { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[rgl misc3d MASS]; }; +VecStatGraphs3D = derive { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[MASS misc3d rgl]; }; VennDiagram = derive { name="VennDiagram"; version="1.6.9"; sha256="0sxgspqsn15y3pipd9wy4wh2n5rkb9bazqkfwkf88p483azpjxw9"; depends=[]; }; -VideoComparison = derive { name="VideoComparison"; version="0.11"; sha256="04jc9br4ddck2sh9bhy02jx34cqxvh904lr46sid6dnmaqfn80l7"; depends=[RJSONIO RCurl zoo pracma Rcpp Rcpp]; }; -VineCopula = derive { name="VineCopula"; version="1.4"; sha256="03bjpnpq8zj1h4z35m2xkgrislvp7lmvpxm905xxn1r3r944kflz"; depends=[MASS mvtnorm igraph copula ADGofTest]; }; +VideoComparison = derive { name="VideoComparison"; version="0.11"; sha256="04jc9br4ddck2sh9bhy02jx34cqxvh904lr46sid6dnmaqfn80l7"; depends=[pracma Rcpp RCurl RJSONIO zoo]; }; +VineCopula = derive { name="VineCopula"; version="1.5"; sha256="1ifb7y0y1b5kha9nv395mlf3h3cczlqkvk782a2z0xy5vf0frfhi"; depends=[ADGofTest copula igraph lattice MASS mvtnorm]; }; VizOR = derive { name="VizOR"; version="0.7-9"; sha256="1xw06y86nsrwpri6asrwh8kccjsqzzidgbpld6d6l7vrglp8m6sr"; depends=[lattice rms]; }; Voss = derive { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; VoxR = derive { name="VoxR"; version="0.5.1"; sha256="07lsp6lrkq0gv55m84dl9w7gz5246d9avypqnkz96n3rbbgd0w5z"; depends=[]; }; -W2CWM2C = derive { name="W2CWM2C"; version="1.0"; sha256="14q1y4vpmrx8qz5nav8bbjkxqsqk646zcwr8h7yzi7cfa85b4cxz"; depends=[waveslim wavemulcor]; }; -W3CMarkupValidator = derive { name="W3CMarkupValidator"; version="0.1-2"; sha256="162bjf8g94xxif86c6545kjvn2m06v618kna6ic2b3alyx577fww"; depends=[XML RCurl]; }; +W2CWM2C = derive { name="W2CWM2C"; version="1.0"; sha256="14q1y4vpmrx8qz5nav8bbjkxqsqk646zcwr8h7yzi7cfa85b4cxz"; depends=[wavemulcor waveslim]; }; +W3CMarkupValidator = derive { name="W3CMarkupValidator"; version="0.1-2"; sha256="162bjf8g94xxif86c6545kjvn2m06v618kna6ic2b3alyx577fww"; depends=[RCurl XML]; }; WARN = derive { name="WARN"; version="1.1"; sha256="0rnzsc8vbm116g4cwdivmxqv1zyg4givjrrlahvbf4xl5pbryg6d"; depends=[MASS]; }; WCE = derive { name="WCE"; version="1.0"; sha256="1kb1z67ymnz8cgwxq6m5fpqgxmmrfiwh2q3x4rhanac2sinagyn4"; depends=[plyr survival]; }; WCQ = derive { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; }; WDI = derive { name="WDI"; version="2.4"; sha256="0ih6d9znq6b2prb4nvq5ypyjv1kpi1vylm3zvmkdjvx95z1qsinf"; depends=[RJSONIO]; }; -WGCNA = derive { name="WGCNA"; version="1.46"; sha256="0amrj6bm4rdr9db57a7qqkh0wk8f9vkvpc3jag9dhwvxfwnrn378"; depends=[dynamicTreeCut fastcluster matrixStats Hmisc foreach doParallel reshape survival]; }; -WMCapacity = derive { name="WMCapacity"; version="0.9.6.6"; sha256="19x6l06srh59q1cnixisa5fgm5hkpq35h9zfmdnfaj3xl8pxhzyn"; depends=[gtools gWidgets gWidgetsRGtk2 coda cairoDevice RGtk2 XML]; }; +WGCNA = derive { name="WGCNA"; version="1.47"; sha256="1q4lags9ihadbwyisbyc21bpb7p8dd82sxwmbjq83z7s3vrlh8bd"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach Hmisc impute matrixStats preprocessCore reshape survival]; }; +WMCapacity = derive { name="WMCapacity"; version="0.9.6.6"; sha256="19x6l06srh59q1cnixisa5fgm5hkpq35h9zfmdnfaj3xl8pxhzyn"; depends=[cairoDevice coda gtools gWidgets gWidgetsRGtk2 RGtk2 XML]; }; WMDB = derive { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; }; -WRS2 = derive { name="WRS2"; version="0.3-1"; sha256="11i9zv7p7808v3hvnhjn58yl7mwh26zhis6hh9n73dw3hn22xdng"; depends=[MASS reshape plyr]; }; +WRS2 = derive { name="WRS2"; version="0.3-1"; sha256="11i9zv7p7808v3hvnhjn58yl7mwh26zhis6hh9n73dw3hn22xdng"; depends=[MASS plyr reshape]; }; WWGbook = derive { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; -WaterML = derive { name="WaterML"; version="1.0.0"; sha256="125aivc23qgarndbwxif3xmqjp4n32vyk8cb7f7a2v3y51z332j2"; depends=[XML RJSONIO httr]; }; -Watersheds = derive { name="Watersheds"; version="1.0"; sha256="11hrprl8ldbgk1j1f8z4cb327c8d94x1fc29dpacqck48gdb4wmp"; depends=[sp maptools rgeos lattice splancs]; }; +WaterML = derive { name="WaterML"; version="1.0.0"; sha256="125aivc23qgarndbwxif3xmqjp4n32vyk8cb7f7a2v3y51z332j2"; depends=[httr RJSONIO XML]; }; +Watersheds = derive { name="Watersheds"; version="1.0"; sha256="11hrprl8ldbgk1j1f8z4cb327c8d94x1fc29dpacqck48gdb4wmp"; depends=[lattice maptools rgeos sp splancs]; }; Wats = derive { name="Wats"; version="0.2-16"; sha256="1wbyyllmjsmh8wb8npzizlfn3hsvfpqp9p3b5wx3zpsavqw839wy"; depends=[colorspace ggplot2 lubridate plyr RColorBrewer testit zoo]; }; -WaveCD = derive { name="WaveCD"; version="1.0"; sha256="0gracn8lknw96nnir1m8fg5va3f45vvbiy69rxx8vibnfdg1q3l9"; depends=[waveslim lattice]; }; +WaveCD = derive { name="WaveCD"; version="1.0"; sha256="0gracn8lknw96nnir1m8fg5va3f45vvbiy69rxx8vibnfdg1q3l9"; depends=[lattice waveslim]; }; WaveletComp = derive { name="WaveletComp"; version="1.0"; sha256="16ghxqjbv39pmgd52im6ilkkh0hpnaw8ns0hwkngpbr479m1grdp"; depends=[]; }; -WeightedCluster = derive { name="WeightedCluster"; version="1.2"; sha256="1d0df284fzfa34fi7b3d7f4zzm9ppyah46rj865446l5pjvl9np3"; depends=[TraMineR cluster RColorBrewer]; }; +WeightedCluster = derive { name="WeightedCluster"; version="1.2"; sha256="1d0df284fzfa34fi7b3d7f4zzm9ppyah46rj865446l5pjvl9np3"; depends=[cluster RColorBrewer TraMineR]; }; WeightedPortTest = derive { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; WhatIf = derive { name="WhatIf"; version="1.5-6"; sha256="02lqvirnf24jn8b2s08z5fjmpilp2z08lww1s793n3pn783adbky"; depends=[lpSolve]; }; -WhiteStripe = derive { name="WhiteStripe"; version="1.0"; sha256="0j8f10dwc14a0yfnjw73i6mrh0y9iyjbxmhklz2hlxv1k53pppbg"; depends=[oro_nifti mgcv fslr]; }; +WhiteStripe = derive { name="WhiteStripe"; version="1.1.1"; sha256="1naavgkvgky3lzg5vlz11g589cxr0fgiqz2waz86da1ksk4a19gw"; depends=[mgcv oro_nifti]; }; WhopGenome = derive { name="WhopGenome"; version="0.9.2"; sha256="0nhl3qanwvyxvkrdc0wngzdx6id0yfzbf9wp170mcsyd4qh7pxzs"; depends=[]; }; -WideLM = derive { name="WideLM"; version="0.1-1"; sha256="0spxl960pgzh0cn1gkw2ayixpi982rr85qajcdqahmn9msk877h8"; depends=[Rcpp Rcpp]; }; -WikipediR = derive { name="WikipediR"; version="1.1.0"; sha256="19hc1vmyv0bnf00q8vwmfr6jxrcd1h5xzb9pphy5grghbj01bcl8"; depends=[httr jsonlite]; }; +WideLM = derive { name="WideLM"; version="0.1-1"; sha256="0spxl960pgzh0cn1gkw2ayixpi982rr85qajcdqahmn9msk877h8"; depends=[Rcpp]; }; +WikidataR = derive { name="WikidataR"; version="1.0.0"; sha256="061745pz4j9gldbwy6pa5pbxmin84csqpv7r5r8lanvc0m7kgcgx"; depends=[httr jsonlite WikipediR]; }; +WikipediR = derive { name="WikipediR"; version="1.2.0"; sha256="1l9q9yg4z4j0lch9r8xr9q0f8mr0lpzf50ygmkkcvfd5sp7hirmi"; depends=[httr jsonlite]; }; WikipediaR = derive { name="WikipediaR"; version="1.0"; sha256="0kx966q5zn7jq1m7b8w1y1zllxvslr66bz6ji1lr11vk0fykl3kn"; depends=[XML]; }; WilcoxCV = derive { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; WordPools = derive { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; }; WrightMap = derive { name="WrightMap"; version="1.1"; sha256="0dmximp549gr37ps56vz8mnlii7753dc5v0wl3s78cymjmnmyr0z"; depends=[]; }; WriteXLS = derive { name="WriteXLS"; version="3.5.1"; sha256="0grhwwlibdpvzjlm1vc5ykl54jcz0jmg6rkhis00rjn5yqccx0in"; depends=[]; }; -XBRL = derive { name="XBRL"; version="0.99.16"; sha256="1wrcm8srn185qrba7rig3fvwjz1n2ab296i0jr71vhyp9417h40q"; depends=[Rcpp Rcpp]; }; -XLConnect = derive { name="XLConnect"; version="0.2-11"; sha256="02wxnr6h06h125dqszs8mzq4av842g445ndr59xgscxr03fyvi8p"; depends=[XLConnectJars rJava]; }; +XBRL = derive { name="XBRL"; version="0.99.16"; sha256="1wrcm8srn185qrba7rig3fvwjz1n2ab296i0jr71vhyp9417h40q"; depends=[Rcpp]; }; +XHWE = derive { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; +XLConnect = derive { name="XLConnect"; version="0.2-11"; sha256="02wxnr6h06h125dqszs8mzq4av842g445ndr59xgscxr03fyvi8p"; depends=[rJava XLConnectJars]; }; XLConnectJars = derive { name="XLConnectJars"; version="0.2-9"; sha256="0js79297himq628cwx5cc3pcq3iv6p16bn4bpd5diyjaya4x27g3"; depends=[rJava]; }; -XML = derive { name="XML"; version="3.98-1.1"; sha256="0n9i6746211wihglbpsgalj2cyvggn4rv6a4fbavqwnjw3h1hwwl"; depends=[]; }; -XML2R = derive { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[XML RCurl plyr]; }; +XML = derive { name="XML"; version="3.98-1.2"; sha256="13rhl534l0cnklxf6zb9y8ykg0k5idg9dxy0nv1vbliz6rw3dr00"; depends=[]; }; +XML2R = derive { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XNomial = derive { name="XNomial"; version="1.0.1"; sha256="134bwglqhgah7v3w6ir65dch2dwp5h4vldw521ba74l5v9b2j2h4"; depends=[]; }; XiMpLe = derive { name="XiMpLe"; version="0.03-21"; sha256="1j387jzxh0z9dmhvc0kpjjjzf781sgrw57nwzdqwx6bn09bw509d"; depends=[]; }; Xmisc = derive { name="Xmisc"; version="0.2.1"; sha256="11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1"; depends=[]; }; YPmodel = derive { name="YPmodel"; version="1.1"; sha256="036f5y8qrcxglblgnaa15xzlz9pxbhbysrbr2gl66h9dvcd6kavr"; depends=[]; }; YaleToolkit = derive { name="YaleToolkit"; version="4.2.2"; sha256="12wggdyz0wgnmxnqhp8bypyy1x1p50g49fwdzl2l43il44cdyv0g"; depends=[foreach iterators]; }; YieldCurve = derive { name="YieldCurve"; version="4.1"; sha256="0w47j8v2lvarrclnixwzaq98nv1xh2m48q5xvnmk7j9nsv2l3p68"; depends=[xts]; }; -YourCast = derive { name="YourCast"; version="1.6.2"; sha256="0vl37svwky6j1am235ac2wk1fdmh509w0h4m7y93lpjhzj6m8c1p"; depends=[ggplot2 gridExtra lattice foreign reshape2]; }; -YplantQMC = derive { name="YplantQMC"; version="0.6-4"; sha256="09galr2bcjvfpcp84znsv45j2cfyn4yhdx31kxs062sylys6kxld"; depends=[rgl geometry LeafAngle gplots]; }; +YourCast = derive { name="YourCast"; version="1.6.2"; sha256="0vl37svwky6j1am235ac2wk1fdmh509w0h4m7y93lpjhzj6m8c1p"; depends=[foreign ggplot2 gridExtra lattice reshape2]; }; +YplantQMC = derive { name="YplantQMC"; version="0.6-4"; sha256="09galr2bcjvfpcp84znsv45j2cfyn4yhdx31kxs062sylys6kxld"; depends=[geometry gplots LeafAngle rgl]; }; YuGene = derive { name="YuGene"; version="1.1.2"; sha256="0sy0bh49l0fajh1z88mpb4f0k3hsf3kd1vxv731qhpxcrc3pz09b"; depends=[mixOmics]; }; ZIM = derive { name="ZIM"; version="1.0.2"; sha256="1n4dc0as011gzaac153zq1dfbg1axvmf9znlmhl7xjj4dz4966qm"; depends=[MASS]; }; -ZeBook = derive { name="ZeBook"; version="0.5"; sha256="1djwda6hzx6kpf4dbmw0fkfq39fqh80aa3q9c6p41qxzcpim27dw"; depends=[triangle deSolve]; }; +ZeBook = derive { name="ZeBook"; version="0.5"; sha256="1djwda6hzx6kpf4dbmw0fkfq39fqh80aa3q9c6p41qxzcpim27dw"; depends=[deSolve triangle]; }; Zelig = derive { name="Zelig"; version="4.2-1"; sha256="1hhr9jx25fdnkqwyj2bkgrvqlah4z2drphmb5mdn1an2p2g23v9z"; depends=[boot MASS sandwich]; }; -ZeligChoice = derive { name="ZeligChoice"; version="0.8-1"; sha256="1ql9yq83ipf0vpv63fpckylwq4jrcbfjgjm77f5ndkd83gqjzrmg"; depends=[Zelig VGAM]; }; -ZeligGAM = derive { name="ZeligGAM"; version="0.7-1"; sha256="1643ycx51mnlxwiarfkrwm8gr8clx00xi2llcaqsd3wsrr4z5j97"; depends=[Zelig mgcv]; }; -ZeligMultilevel = derive { name="ZeligMultilevel"; version="0.7-1"; sha256="00zlambykds4z1c5kx3rpla1kllyp96cxwvbc5lalwdb9i48pp3s"; depends=[Zelig lme4]; }; -aCRM = derive { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[dummies randomForest kernelFactory ada]; }; -aLFQ = derive { name="aLFQ"; version="1.3.2"; sha256="1963np2b2x7gbpgwcx0rqxd2psfdfmh72ap1y4p7f37ibjm8g45m"; depends=[data_table plyr caret seqinr lattice randomForest ROCR reshape2 protiq]; }; +ZeligChoice = derive { name="ZeligChoice"; version="0.8-1"; sha256="1ql9yq83ipf0vpv63fpckylwq4jrcbfjgjm77f5ndkd83gqjzrmg"; depends=[VGAM Zelig]; }; +ZeligGAM = derive { name="ZeligGAM"; version="0.7-1"; sha256="1643ycx51mnlxwiarfkrwm8gr8clx00xi2llcaqsd3wsrr4z5j97"; depends=[mgcv Zelig]; }; +ZeligMultilevel = derive { name="ZeligMultilevel"; version="0.7-1"; sha256="00zlambykds4z1c5kx3rpla1kllyp96cxwvbc5lalwdb9i48pp3s"; depends=[lme4 Zelig]; }; +aCRM = derive { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; +aLFQ = derive { name="aLFQ"; version="1.3.2"; sha256="1963np2b2x7gbpgwcx0rqxd2psfdfmh72ap1y4p7f37ibjm8g45m"; depends=[caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; }; aRpsDCA = derive { name="aRpsDCA"; version="1.0.0"; sha256="035888scbl5333sz25f9n6xh1zis7l2752p4nhsbs2g44q38l9h6"; depends=[]; }; -aRxiv = derive { name="aRxiv"; version="0.5.8"; sha256="0kwphz9x4ljsznvxxvm03mmbrv3ipyy2fh8lgik4zvv4c63mlxsh"; depends=[httr XML]; }; -abc = derive { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data nnet quantreg MASS locfit]; }; +aRxiv = derive { name="aRxiv"; version="0.5.10"; sha256="1q8nblb0kfdidcj1nwxn0fap87wpkg49z0bgmwayskwv1p860wrh"; depends=[httr XML]; }; +aSPU = derive { name="aSPU"; version="1.35"; sha256="0wlp47wc75mmgh3986npqa72d4jia1jgalfvz7sq62wjsh1wkrbv"; depends=[]; }; +abbyyR = derive { name="abbyyR"; version="0.1"; sha256="03krflrjhq7yx06wacfyxzqvq0v2b17xvcyl8sfnaylrilracwjq"; depends=[httr XML]; }; +abc = derive { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; -abcdeFBA = derive { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[Rglpk rgl corrplot lattice]; }; -abctools = derive { name="abctools"; version="1.0"; sha256="0kaw2saghjyysj2bcsij2018ls3lrzh9188m0yqhmv71k5vh68rd"; depends=[abc abind plyr]; }; -abd = derive { name="abd"; version="0.2-7"; sha256="0zkqwdcpz1v9k509vvzfbf9732v43q919hwd9yq3q0dg67d32ai7"; depends=[nlme lattice mosaic]; }; +abcdeFBA = derive { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; +abctools = derive { name="abctools"; version="1.0.2"; sha256="1wdm42g2maab700fq2shpr1kajpj9m4c4z6k49gghrdzpk1kqxsa"; depends=[abc abind plyr]; }; +abd = derive { name="abd"; version="0.2-7"; sha256="0zkqwdcpz1v9k509vvzfbf9732v43q919hwd9yq3q0dg67d32ai7"; depends=[lattice mosaic nlme]; }; abf2 = derive { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; }; abind = derive { name="abind"; version="1.4-3"; sha256="1km61qygl4g3f91ar15r55b13gl8dra387vhmq0igf0sij3mbhmn"; depends=[]; }; abn = derive { name="abn"; version="0.85"; sha256="1ml4l4fiqscc1ikv0wsi73rymb9599mpnhmzlfnvv4zp3fkfm6qm"; depends=[Cairo]; }; abundant = derive { name="abundant"; version="1.0"; sha256="0n2yvq057vq5idi7mynnp15cbsijyyipgbl4p7rqfbbgpk5hy3qb"; depends=[QUIC]; }; -accelerometry = derive { name="accelerometry"; version="2.2.4"; sha256="0jk3dirk7bbddqh5j6nw2k1wm1i3k3xnz1mcb6lb5qyf1b642miw"; depends=[Rcpp Rcpp]; }; -accrual = derive { name="accrual"; version="1.0"; sha256="0gw418i9nlrm7nkg6d4m2icd4a04a7avqfjj7nidhl6vy4nflg3k"; depends=[fgui SMPracticals]; }; +acc = derive { name="acc"; version="1.0.2"; sha256="1z7hncgd43mc84v3wdcqpkp3gxsdyvh7h8s6qvgap2lp04m1j74l"; depends=[mhsmm PhysicalActivity timeDate zoo]; }; +accelerometry = derive { name="accelerometry"; version="2.2.5"; sha256="00mn09j7y39sc7h5srnnfk2l73vhh6zq7rzc0vckfvs72lncmwv5"; depends=[Rcpp]; }; +accrual = derive { name="accrual"; version="1.1"; sha256="12zlv34pgmhcvisqk3x09hjpmfj91pn56pkjyj483mcf634m9ha4"; depends=[fgui SMPracticals]; }; accrued = derive { name="accrued"; version="1.2"; sha256="0xkar6kpxf7sq36xqf6cvns2sp5qgqxqjb8hindp59gvlcd2r5a7"; depends=[]; }; acepack = derive { name="acepack"; version="1.3-3.3"; sha256="13ry3vyys12iplb14jfhmkrl9g5fxg3iijiggq4s4zb5m5436b1y"; depends=[]; }; acid = derive { name="acid"; version="1.0"; sha256="0m59xnz6435n7j3fggv274g5rap7cpr0zby3aqbaycfdfrp78d1h"; depends=[gamlss gamlss_dist Hmisc]; }; acm4r = derive { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; }; acnr = derive { name="acnr"; version="0.2.4"; sha256="1nry927zqhb34h9lcixr344n3sxvq1142zwgj8hadlw69dv8m59y"; depends=[R_utils xtable]; }; acopula = derive { name="acopula"; version="0.9.2"; sha256="1z8bs4abbfsdxfpbczdrf1ma84bmh7akwx2ki9070zavrhbf00cf"; depends=[]; }; -acp = derive { name="acp"; version="1.1"; sha256="0bdyaab2zalqaq5m4zr86mj92wqq520wqbdb5bkvs7skq6xd1zq9"; depends=[tseries]; }; -acs = derive { name="acs"; version="1.2"; sha256="1vw4ghqcz53m3qy7hy2j7nrdinbbqjpwvr1hsvglq31fq7wss3bd"; depends=[stringr plyr XML]; }; +acp = derive { name="acp"; version="2.0"; sha256="11ij2xhnkhy7lnzj8fld7habidb9av8a2bk22ycf62f556pqf533"; depends=[quantmod tseries]; }; +acs = derive { name="acs"; version="1.2"; sha256="1vw4ghqcz53m3qy7hy2j7nrdinbbqjpwvr1hsvglq31fq7wss3bd"; depends=[plyr stringr XML]; }; acss = derive { name="acss"; version="0.2-5"; sha256="0cqa60544f58l5qd7h6xmsir40b9hqnq6pqgd5hfx2j2l5n7qhmk"; depends=[acss_data zoo]; }; acss_data = derive { name="acss.data"; version="1.0"; sha256="09kl4179ipr8bq19g89xcdi1xxs397zcx5cvgp6viy8gn687ilgv"; depends=[]; }; activity = derive { name="activity"; version="1.0"; sha256="1y1vy3kj9n21jvbyl3s5hllfkqp3z1rnn7701c5jxhay5dbdz3p2"; depends=[circular overlap pbapply]; }; actuar = derive { name="actuar"; version="1.1-8"; sha256="0zdw8dphpp49hr82z44az10vyawj301p8lr0cc7dk96g7xrzmlwa"; depends=[]; }; ada = derive { name="ada"; version="2.0-3"; sha256="1c0nj9k628bcl4r8j0rmyp5f1igdjq6qhjxyif6575fvn2gdzmbw"; depends=[rpart]; }; -adabag = derive { name="adabag"; version="4.0"; sha256="0n4zls13f46rxqrx9qkvrifshb3cl8l6ni7zw36pm6fixbz844fk"; depends=[rpart mlbench caret]; }; +adabag = derive { name="adabag"; version="4.0"; sha256="0n4zls13f46rxqrx9qkvrifshb3cl8l6ni7zw36pm6fixbz844fk"; depends=[caret mlbench rpart]; }; adagio = derive { name="adagio"; version="0.5.9"; sha256="1yp9w557advb7dzrdqwkffpdmhn6mk4879lrrjd0d6kv89fwz5yr"; depends=[]; }; adaptDA = derive { name="adaptDA"; version="1.0"; sha256="0nk7n628d30jz03a2rmpgzrwwd79rlpqvr6lwhilmkg1gblvz7r1"; depends=[MASS]; }; adaptMCMC = derive { name="adaptMCMC"; version="1.1"; sha256="1y1qxn3qm59nyy9ld5x30p452yam7b2fyl236b14xvpm8g3xx1fa"; depends=[coda Matrix]; }; adaptTest = derive { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jvaw3c91008l66vf5i4k5anhcs32a3j8yh2iv"; depends=[lattice]; }; adaptivetau = derive { name="adaptivetau"; version="2.2"; sha256="1xqvbbdmn70fmycpn0680q1l9s34kcmkjl812d7yrfxwm1bjfif5"; depends=[]; }; -adaptsmoFMRI = derive { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[Matrix coda mvtnorm MCMCpack spatstat]; }; +adaptsmoFMRI = derive { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; additivityTests = derive { name="additivityTests"; version="1.1-4"; sha256="048ds90wqjdjy1nyhna3m06asdklbh8sx1n556kss2j1r1pma1sw"; depends=[]; }; -addreg = derive { name="addreg"; version="1.2"; sha256="1xgf9q0z3prvchyba1vaai6ij72nzvj2dqyr6y2wzb96jfqv19kl"; depends=[combinat glm2]; }; +addreg = derive { name="addreg"; version="2.0"; sha256="1lc8p70di466i061jrbahq4hir4g5a8rns6044jjjg8v7b1y8alc"; depends=[combinat glm2]; }; ade4 = derive { name="ade4"; version="1.7-2"; sha256="01pchn70jpz8v9l86ng34a2vgn3pv4v5iwxz5n39f685p9lkc2nn"; depends=[]; }; ade4TkGUI = derive { name="ade4TkGUI"; version="0.2-6"; sha256="010ggsxcmljh0cdba4lcfnsd9r49pwqs6kbw88syfn2qv65hh5kq"; depends=[ade4]; }; -adegenet = derive { name="adegenet"; version="1.4-2"; sha256="13fglxy40rnwi5hsmmvwlfcvfn8dybxyy3k5qhpml8jgpbl3fsdb"; depends=[ade4 MASS igraph ape shiny ggplot2]; }; +adegenet = derive { name="adegenet"; version="1.4-2"; sha256="13fglxy40rnwi5hsmmvwlfcvfn8dybxyy3k5qhpml8jgpbl3fsdb"; depends=[ade4 ape ggplot2 igraph MASS shiny]; }; adegraphics = derive { name="adegraphics"; version="1.0-2"; sha256="1jhi761rhrq1k27gxfns46j67x0ajbff6mz9cwl5jkcqg2mbcg8q"; depends=[ade4 KernSmooth lattice RColorBrewer sp]; }; -adehabitat = derive { name="adehabitat"; version="1.8.17"; sha256="0cy98fd6mcbjc152vv41mnh5xj19xdfag8n950fvffbrpvpgbcpb"; depends=[ade4 tkrplot shapefiles sp]; }; -adehabitatHR = derive { name="adehabitatHR"; version="0.4.13"; sha256="140ar1naf67v996d5p0i2v07g02pf9c4c6h1pjicai5n59s7z72v"; depends=[sp deldir ade4 adehabitatMA adehabitatLT]; }; -adehabitatHS = derive { name="adehabitatHS"; version="0.3.11"; sha256="0sbhc1mvdc8pxq56plbgk0ry65chxcv3zjry4151hiv7yxpn39ri"; depends=[sp ade4 adehabitatMA adehabitatHR]; }; -adehabitatLT = derive { name="adehabitatLT"; version="0.3.19"; sha256="0h9n6j3a52bik5pslysvhb11d8df5k50ghi34zlxhdcbm09gfnmz"; depends=[sp ade4 adehabitatMA CircStats]; }; +adehabitat = derive { name="adehabitat"; version="1.8.17"; sha256="0cy98fd6mcbjc152vv41mnh5xj19xdfag8n950fvffbrpvpgbcpb"; depends=[ade4 shapefiles sp tkrplot]; }; +adehabitatHR = derive { name="adehabitatHR"; version="0.4.13"; sha256="140ar1naf67v996d5p0i2v07g02pf9c4c6h1pjicai5n59s7z72v"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; }; +adehabitatHS = derive { name="adehabitatHS"; version="0.3.11"; sha256="0sbhc1mvdc8pxq56plbgk0ry65chxcv3zjry4151hiv7yxpn39ri"; depends=[ade4 adehabitatHR adehabitatMA sp]; }; +adehabitatLT = derive { name="adehabitatLT"; version="0.3.19"; sha256="0h9n6j3a52bik5pslysvhb11d8df5k50ghi34zlxhdcbm09gfnmz"; depends=[ade4 adehabitatMA CircStats sp]; }; adehabitatMA = derive { name="adehabitatMA"; version="0.3.9"; sha256="15n9mg8m4mjg5zn5c5hz9bl5qcghzkijiflk8psc0kg2csfpv7hy"; depends=[sp]; }; -adephylo = derive { name="adephylo"; version="1.1-6"; sha256="1sk639gmk3cs711xn68mx18r28kjd1pychcg89qlki03y1hnxg7j"; depends=[ade4 phylobase ape adegenet]; }; -adhoc = derive { name="adhoc"; version="1.0"; sha256="193adddarjkc2kk1xncfkm919s1lkmc1yzgyz9793p74nqmfsj0a"; depends=[spider ape polynom]; }; +adephylo = derive { name="adephylo"; version="1.1-6"; sha256="1sk639gmk3cs711xn68mx18r28kjd1pychcg89qlki03y1hnxg7j"; depends=[ade4 adegenet ape phylobase]; }; +adhoc = derive { name="adhoc"; version="1.0"; sha256="193adddarjkc2kk1xncfkm919s1lkmc1yzgyz9793p74nqmfsj0a"; depends=[ape polynom spider]; }; adimpro = derive { name="adimpro"; version="0.7.8"; sha256="06zwdgl7g4azg2mn7p35may8hsjcvf2dz7dj86zqngjspda123s4"; depends=[]; }; adlift = derive { name="adlift"; version="1.3-2"; sha256="0nzg16vhm5qg3xzczi3f6cynvp9ym2jsfrc4fdyxq7bwp9kry2i4"; depends=[EbayesThresh]; }; ads = derive { name="ads"; version="1.5-2.2"; sha256="17k24dihl41jgkkglhnkj7lvvl53dgahjkb5jhfmfgk6i16c7s23"; depends=[ade4 spatstat]; }; adwave = derive { name="adwave"; version="1.0"; sha256="10cz870n3az7brmf2658g0jrc1x39c69vw37n99m8x6wxxp6ypn8"; depends=[waveslim]; }; -aemo = derive { name="aemo"; version="0.1.0"; sha256="1iik0rrqkkx9n1qb1pvq5iwxqmvs6vnx8z80hdzb5vqq0lvi1bsx"; depends=[dplyr stringr assertthat lubridate]; }; -afex = derive { name="afex"; version="0.13-145"; sha256="0wyjgxh1rdibj21f8dbwg7f30q1z6jwwpj2dcjx2rh60axvp1dir"; depends=[car lme4 reshape2 stringr coin Matrix pbkrtest]; }; -aftgee = derive { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[MASS BB survival geepack]; }; -agRee = derive { name="agRee"; version="0.3-1"; sha256="1gqbhv44z1r9m54fmrg0frnzsgsp13v5ppmzpv28frz9d8x7sxx6"; depends=[miscF lme4 R2jags]; }; -agop = derive { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[Matrix igraph]; }; -agricolae = derive { name="agricolae"; version="1.2-1"; sha256="1vrc1bjqcp3xk8q41bl3kvjvaj58gw19dv7vwsxn9r6r99hlb3j1"; depends=[klaR MASS nlme cluster spdep]; }; +aemo = derive { name="aemo"; version="0.1.0"; sha256="1iik0rrqkkx9n1qb1pvq5iwxqmvs6vnx8z80hdzb5vqq0lvi1bsx"; depends=[assertthat dplyr lubridate stringr]; }; +afex = derive { name="afex"; version="0.13-145"; sha256="0wyjgxh1rdibj21f8dbwg7f30q1z6jwwpj2dcjx2rh60axvp1dir"; depends=[car coin lme4 Matrix pbkrtest reshape2 stringr]; }; +aftgee = derive { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[BB geepack MASS survival]; }; +agRee = derive { name="agRee"; version="0.3-1"; sha256="1gqbhv44z1r9m54fmrg0frnzsgsp13v5ppmzpv28frz9d8x7sxx6"; depends=[lme4 miscF R2jags]; }; +agop = derive { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; +agricolae = derive { name="agricolae"; version="1.2-1"; sha256="1vrc1bjqcp3xk8q41bl3kvjvaj58gw19dv7vwsxn9r6r99hlb3j1"; depends=[cluster klaR MASS nlme spdep]; }; agridat = derive { name="agridat"; version="1.11"; sha256="1bnkzacwp22dw5vppm4yz583h1dw5d93dlca9i3ba2y9dzsalx0d"; depends=[lattice reshape2]; }; agrmt = derive { name="agrmt"; version="1.39"; sha256="0qkl8wikvg635mr8v3n9svdicnb8sl4brrh7px1n5jy71h7cswd7"; depends=[]; }; agsemisc = derive { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; -ahaz = derive { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[survival Matrix]; }; +ahaz = derive { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; aidar = derive { name="aidar"; version="1.0.0"; sha256="01vs14bz4k504q5lx65b60kyi7hgvjdmib8igiipjmg4snwh8hdk"; depends=[XML]; }; akima = derive { name="akima"; version="0.5-11"; sha256="17n7iiwybwanvm5mflb1f2xx1gnw1pcmfsnl1f82afixpalbs0gh"; depends=[]; }; akmeans = derive { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; alabama = derive { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; ald = derive { name="ald"; version="1.0"; sha256="1vphmqhx6wlzsz3s94jsa4mk6wpacp93wfgpj0vp9ljfb3aplhik"; depends=[]; }; -algstat = derive { name="algstat"; version="0.0.2"; sha256="1ssdrrwnxrhx3syndqxqcaldlbnjamk3x2yiq7jgxy0qsiadmqsi"; depends=[mpoly stringr reshape2 Rcpp Rcpp]; }; +algstat = derive { name="algstat"; version="0.0.2"; sha256="1ssdrrwnxrhx3syndqxqcaldlbnjamk3x2yiq7jgxy0qsiadmqsi"; depends=[mpoly Rcpp reshape2 stringr]; }; allan = derive { name="allan"; version="1.01"; sha256="02bv9d5ywbq67achfjifb3i7iiaaxa8r9x3qvpri2jl1cxnlf27m"; depends=[biglm]; }; allanvar = derive { name="allanvar"; version="1.0"; sha256="0wpywdr15gb49m9kxrpjfsxlxrm4hwm46x42k8dgc6sihfsqbm22"; depends=[gplots]; }; alleHap = derive { name="alleHap"; version="0.7.2"; sha256="1x10grrv732a0iidr2c96vbl46553njhvvlq249jxn3y11lfq2gv"; depends=[gtools]; }; allelematch = derive { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; }; allelic = derive { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; }; -alm = derive { name="alm"; version="0.4.0"; sha256="125cl5b1sps33ipsh2pygrw79mhin1qj374lq56ny7c9rp4n9w7p"; depends=[ggplot2 plyr stringr reshape reshape2 httr jsonlite lubridate]; }; -alphaOutlier = derive { name="alphaOutlier"; version="1.0.0"; sha256="1f4jma487sp5csrvp5z7rx7k78kj8d4rkw7i3ql764rmm0pbk1h8"; depends=[Rsolnp nleqslv quantreg]; }; -alphahull = derive { name="alphahull"; version="2.0"; sha256="1z8kbh3y5clh3hn018g0fci2psd0l36nz4a08pgg7md2bbhripbl"; depends=[ggplot2 tripack sgeostat spatstat splancs]; }; +alm = derive { name="alm"; version="0.4.0"; sha256="125cl5b1sps33ipsh2pygrw79mhin1qj374lq56ny7c9rp4n9w7p"; depends=[ggplot2 httr jsonlite lubridate plyr reshape reshape2 stringr]; }; +alphaOutlier = derive { name="alphaOutlier"; version="1.0.1"; sha256="1zl80q08vcyvyakfv6cd444m6l5z14p7bv9jf8kpg4dad3d63mhz"; depends=[nleqslv quantreg Rsolnp]; }; +alphahull = derive { name="alphahull"; version="2.0"; sha256="1z8kbh3y5clh3hn018g0fci2psd0l36nz4a08pgg7md2bbhripbl"; depends=[ggplot2 sgeostat spatstat splancs tripack]; }; alphashape3d = derive { name="alphashape3d"; version="1.1"; sha256="1hfxvzqgirc587vxyggxdqii90nvypzi3wddvd2zdw2h95v9kfyg"; depends=[geometry rgl]; }; alr3 = derive { name="alr3"; version="2.0.5"; sha256="0zrrsv2kjq3cky3bhk6gp32p1qpr1i5k2lx7c1w08bql0nb1x740"; depends=[car]; }; alr4 = derive { name="alr4"; version="1.0.5"; sha256="0m8jgc4mfni17psf8m0avf0m364vcq5k3c9x807p98ch2z5nsygv"; depends=[car effects]; }; @@ -2367,95 +2423,98 @@ amap = derive { name="amap"; version="0.8-14"; sha256="1dz37z9v4zvyvqrs4xvpfv468 amei = derive { name="amei"; version="1.0-7"; sha256="0dyx6a1y5i0abwka0y89d0mpj55rm5ywb4r9c2mqmy43djp181hn"; depends=[]; }; amen = derive { name="amen"; version="1.0"; sha256="17kaknfgi39qcg5mhkdyf6cn2l3nn9n2xzvyz1c4piy6inhmj36c"; depends=[]; }; aml = derive { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; -anacor = derive { name="anacor"; version="1.0-5"; sha256="1m2r5x5spb5nahd9cvnsxwqi0ay2kasmha21rbwj3r99jz1vxkql"; depends=[rgl car scatterplot3d colorspace fda]; }; -analogue = derive { name="analogue"; version="0.16-0"; sha256="1izbqzmnw4hmirjlvwp15imzaai2kxbv2gzc58y5awwbfdrg314m"; depends=[vegan mgcv MASS brglm princurve lattice]; }; -analogueExtra = derive { name="analogueExtra"; version="0.1-0"; sha256="0hyl0vn2i594r5czzha7y9a1n4dpznfpmh2j46mci2r57p2s3qr2"; depends=[vegan3d analogue rgl]; }; +anacor = derive { name="anacor"; version="1.0-5"; sha256="1m2r5x5spb5nahd9cvnsxwqi0ay2kasmha21rbwj3r99jz1vxkql"; depends=[car colorspace fda rgl scatterplot3d]; }; +analogue = derive { name="analogue"; version="0.16-3"; sha256="0lv8ljf10jdrgrd59pcjdi1wvjfd0j6qb87xzfx5k8kcp9awx4h6"; depends=[brglm lattice MASS mgcv princurve vegan]; }; +analogueExtra = derive { name="analogueExtra"; version="0.1-0"; sha256="0hyl0vn2i594r5czzha7y9a1n4dpznfpmh2j46mci2r57p2s3qr2"; depends=[analogue rgl vegan3d]; }; analyz = derive { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; -anametrix = derive { name="anametrix"; version="1.6"; sha256="14xrrnvz7jn1jqds48l5pvzlx6hsaxrjc932lqnvv70sfypinjkm"; depends=[RCurl XML pastecs]; }; +anametrix = derive { name="anametrix"; version="1.6"; sha256="14xrrnvz7jn1jqds48l5pvzlx6hsaxrjc932lqnvv70sfypinjkm"; depends=[pastecs RCurl XML]; }; anapuce = derive { name="anapuce"; version="2.2"; sha256="0qs27as628090k3sq5b14l90g7qdp23d0jz5lb1wxsgi3ji0f7qj"; depends=[]; }; -anchors = derive { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[rgenoud MASS]; }; +anchors = derive { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; andrews = derive { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; }; anesrake = derive { name="anesrake"; version="0.70"; sha256="17127rmjfrdwnr2m6205cci3b0kd9girp82qranxwac4mgb7p7ld"; depends=[Hmisc]; }; anfis = derive { name="anfis"; version="0.99.1"; sha256="1v8di5dzwb1g1ldi7idcmmr9nirp9kxvc8km1qq1i8zaw1bh8pqb"; depends=[]; }; anim_plots = derive { name="anim.plots"; version="0.1"; sha256="0qjwmxpkvjf27parh1fvhrkiczm4zlv9c034dp04yysbdz65r1by"; depends=[animation]; }; animalTrack = derive { name="animalTrack"; version="1.0.0"; sha256="0jlvfflpaq64s48sblzh1n1vx8g3870iss97whigri29s6hn79ry"; depends=[rgl]; }; animation = derive { name="animation"; version="2.3"; sha256="1hqgkaxmyyfrx7cfzv00010r9l2n8gxm35jd41p3kc208mhd7ssp"; depends=[]; }; -anominate = derive { name="anominate"; version="0.5"; sha256="0qhq3ngxi1d3yln6bafg3c36a7whnznnww0101da2y0i6dw79lg5"; depends=[coda wnominate oc pscl MCMCpack]; }; -antitrust = derive { name="antitrust"; version="0.94"; sha256="1k768lmx5vv069bd9fzly1205rxr9mkqi1p8jjx67kwmyhhw5sd2"; depends=[MASS evd BB numDeriv ggplot2]; }; +anominate = derive { name="anominate"; version="0.5"; sha256="0qhq3ngxi1d3yln6bafg3c36a7whnznnww0101da2y0i6dw79lg5"; depends=[coda MCMCpack oc pscl wnominate]; }; +antitrust = derive { name="antitrust"; version="0.94"; sha256="1k768lmx5vv069bd9fzly1205rxr9mkqi1p8jjx67kwmyhhw5sd2"; depends=[BB evd ggplot2 MASS numDeriv]; }; aod = derive { name="aod"; version="1.3"; sha256="1a6xs5d5289w69xd2salsxwikjjhjzvsnplqrq78b1sr6kzfyxz3"; depends=[]; }; -aods3 = derive { name="aods3"; version="0.4-1"; sha256="074c16wmgd1vc2yvwx1y84bg55hvmm5yi8zgpwh51jcsbqlhbpgn"; depends=[lme4 boot]; }; +aods3 = derive { name="aods3"; version="0.4-1"; sha256="074c16wmgd1vc2yvwx1y84bg55hvmm5yi8zgpwh51jcsbqlhbpgn"; depends=[boot lme4]; }; aoos = derive { name="aoos"; version="0.2.0"; sha256="0dnhbynkc02mi1a5xsl992dqks44k57z9a05q7k2s25953bqfqq3"; depends=[]; }; -aoristic = derive { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[ggplot2 spatstat GISTools lubridate classInt reshape2 rgdal plotKML MASS sp maptools RColorBrewer]; }; +aop = derive { name="aop"; version="0.99.5"; sha256="1mncia5m79m1nw2kwfsrf62i2dlmxdcwj0rrrs95s51b7c6d369h"; depends=[graph igraph Rgraphviz rjson]; }; +aoristic = derive { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; }; apTreeshape = derive { name="apTreeshape"; version="1.4-5"; sha256="0mvnjchhfbpbnrgnplb6qxa7r2kkvw29gqiprwggkf553wi6zl48"; depends=[ape quantreg]; }; apc = derive { name="apc"; version="1.1"; sha256="0gnjniy7gm5fh4wn7vwml3z5bw6ydd1xxq5npvqljbzy4vhh8k5a"; depends=[]; }; -apcluster = derive { name="apcluster"; version="1.4.1"; sha256="1s7wsgimpln5kiy1ai8clq2r0i6vh8mr5v4xjha9phdbm8l8yfbg"; depends=[Rcpp Matrix Rcpp]; }; -ape = derive { name="ape"; version="3.2"; sha256="015ibyri6r2xdmy644pb1p6xn0rzxaz49sr96859jfvafzi7p2ny"; depends=[nlme lattice]; }; -apex = derive { name="apex"; version="1.0.0"; sha256="1y4y1kji5nvbk0igbv9xjwsjrnz7bsjj23cczydywg9nppsi9df0"; depends=[ape phangorn adegenet]; }; +apcluster = derive { name="apcluster"; version="1.4.1"; sha256="1s7wsgimpln5kiy1ai8clq2r0i6vh8mr5v4xjha9phdbm8l8yfbg"; depends=[Matrix Rcpp]; }; +ape = derive { name="ape"; version="3.3"; sha256="1zdgszyi5kwfj3kccx35q8z57p53zdp819hjqdw5z8y6q7b49j1c"; depends=[lattice nlme]; }; +apex = derive { name="apex"; version="1.0.0"; sha256="1y4y1kji5nvbk0igbv9xjwsjrnz7bsjj23cczydywg9nppsi9df0"; depends=[adegenet ape phangorn]; }; aplore3 = derive { name="aplore3"; version="0.7"; sha256="1xj3k13wjpsydcrai474b94kyj298islzfpfwn8n51k67h8r4l08"; depends=[]; }; aplpack = derive { name="aplpack"; version="1.3.0"; sha256="0i6jy6aygkqk5gagngdw9h9l579lf0qkiy5v8scq5c015w000aaq"; depends=[]; }; -apmsWAPP = derive { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[seqinr gtools]; }; +apmsWAPP = derive { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[aroma_light Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; appell = derive { name="appell"; version="0.0-4"; sha256="0g7pzhxqgscnyf07xycbrpyimp1z1hljgcr3nqigpx09w7zi5wlw"; depends=[]; }; apple = derive { name="apple"; version="0.3"; sha256="194z2f6hwdjjxdkjwlmfhpfp26p9yp3gparklhdbb6zlb4a9nnhz"; depends=[MASS]; }; approximator = derive { name="approximator"; version="1.2-6"; sha256="165qvx5946wkv1qsgbmjhmwvik7m23r1vbpnp7claylflgj1ycnm"; depends=[emulator]; }; aprean3 = derive { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; aprof = derive { name="aprof"; version="0.2.4"; sha256="0gw5qj6c5ygjc6nwx2lb8biykkk73fv2x3j1xxabpgnsfq1whwyc"; depends=[]; }; -apsimr = derive { name="apsimr"; version="1.0"; sha256="1lk8n0vb20sxs02s6xx16d2xrh09p08b6i50b99bx9k7dhlgn6cf"; depends=[ggplot2 XML lubridate reshape2 MASS mgcv]; }; +apsimr = derive { name="apsimr"; version="1.0"; sha256="1lk8n0vb20sxs02s6xx16d2xrh09p08b6i50b99bx9k7dhlgn6cf"; depends=[ggplot2 lubridate MASS mgcv reshape2 XML]; }; apsrtable = derive { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; }; -apt = derive { name="apt"; version="2.3"; sha256="0yrgxdqzwa5zv6rv8d8nnlraxngq60i1f0yrkygwsj4kngv2yhyv"; depends=[erer gWidgets car urca copula]; }; +apt = derive { name="apt"; version="2.3"; sha256="0yrgxdqzwa5zv6rv8d8nnlraxngq60i1f0yrkygwsj4kngv2yhyv"; depends=[car copula erer gWidgets urca]; }; aqfig = derive { name="aqfig"; version="0.8"; sha256="0ha0jb5ag3zx6v7c63lsm81snslzb8y8g565mxjmf7vxpcmzzqsi"; depends=[geoR]; }; -aqp = derive { name="aqp"; version="1.8-6"; sha256="03gwvb5sm9l4vyl0jh9rzjs3ka2qmw4qqh40ywahq3dchpbxmlzd"; depends=[plyr reshape lattice cluster sp Hmisc stringr scales plotrix RColorBrewer MASS digest]; }; -aqr = derive { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[xts RCurl]; }; +aqp = derive { name="aqp"; version="1.8-6"; sha256="03gwvb5sm9l4vyl0jh9rzjs3ka2qmw4qqh40ywahq3dchpbxmlzd"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; +aqr = derive { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; archdata = derive { name="archdata"; version="0.1"; sha256="1k7cpqwgvkwfz25a9db0c8g6ii6xsbhkj3c9alghhaafs7x8n47w"; depends=[]; }; archetypes = derive { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; }; -archiDART = derive { name="archiDART"; version="1.0"; sha256="0fahcw3032rvz1qd2vv872k8d7845zjfm2byrk1nk5b34z25wm2b"; depends=[]; }; -archivist = derive { name="archivist"; version="1.3"; sha256="1did4s9afmbd4b2xcs674fyk2vz0r08vchjfar1q3ri2mfq4p7x5"; depends=[RSQLite DBI shiny lubridate RCurl digest httr]; }; +archiDART = derive { name="archiDART"; version="1.1"; sha256="1md8y3nq575y9v4gj963y92as54h6bzaysnmjirk634rravps9ja"; depends=[XML]; }; +archivist = derive { name="archivist"; version="1.3"; sha256="1did4s9afmbd4b2xcs674fyk2vz0r08vchjfar1q3ri2mfq4p7x5"; depends=[DBI digest httr lubridate RCurl RSQLite shiny]; }; arf3DS4 = derive { name="arf3DS4"; version="2.5-10"; sha256="12cbrk57c9m7fj1x7nfmcj1vp28wj0wymsjdz8ylxhm3jblbgmxc"; depends=[corpcor]; }; arfima = derive { name="arfima"; version="1.2-7"; sha256="00mc50hssnv7qj6dn1l3jgx8ca4vjkqirc38rv538xwjgw9mm1ms"; depends=[ltsa]; }; argosfilter = derive { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; -argparse = derive { name="argparse"; version="1.0.1"; sha256="03p8dpwc26xz01lfbnmckcx6wzky43dyq71085b0anzsavgx0786"; depends=[proto findpython getopt rjson]; }; +argparse = derive { name="argparse"; version="1.0.1"; sha256="03p8dpwc26xz01lfbnmckcx6wzky43dyq71085b0anzsavgx0786"; depends=[findpython getopt proto rjson]; }; argparser = derive { name="argparser"; version="0.1"; sha256="0x4wm8hjzb779pp39v8q210npg7kzh9m8wwqmd17aaqaa3l2al9f"; depends=[]; }; -arm = derive { name="arm"; version="1.8-4"; sha256="17kg5z8spndn41gak9hx7a8dfdx6yrqbsd30lajkgc23x3sd6j1r"; depends=[MASS Matrix lme4 abind coda nlme]; }; +arm = derive { name="arm"; version="1.8-5"; sha256="0mjsjqrim2a6ds8gxrbdyp96b6sz1vjsqic80a5izrc2z9bml5p5"; depends=[abind coda lme4 MASS Matrix nlme]; }; arnie = derive { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; -aroma_affymetrix = derive { name="aroma.affymetrix"; version="2.13.0"; sha256="0rb4qijsqzrv47i30fpcngw50a1gk10zn1r13lszxcsm5i8vjqf7"; depends=[R_utils aroma_core R_methodsS3 R_oo R_cache R_devices R_filesets aroma_apd MASS matrixStats]; }; -aroma_apd = derive { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_methodsS3 R_oo R_utils R_huge]; }; -aroma_cn = derive { name="aroma.cn"; version="1.6.0"; sha256="090qqvv6sk0508knmh2qr1lvpc2vr8s17mj6siblzc66ldp22dj7"; depends=[R_utils aroma_core R_methodsS3 R_oo R_filesets R_cache matrixStats PSCBS]; }; -aroma_core = derive { name="aroma.core"; version="2.13.0"; sha256="1r3r0hrw8akdpjmzhnc0fg6nyd9hccvv4kfbms38qll70lac4910"; depends=[R_utils R_filesets R_devices R_methodsS3 R_oo R_cache R_rsp matrixStats RColorBrewer PSCBS]; }; +aroma_affymetrix = derive { name="aroma.affymetrix"; version="2.13.2"; sha256="0km1mhy8p6pksa0wnwx0cxbfgipi6c7xn7913agsqdpfbfphhm8j"; depends=[aroma_apd aroma_core MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; +aroma_apd = derive { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; +aroma_cn = derive { name="aroma.cn"; version="1.6.0"; sha256="090qqvv6sk0508knmh2qr1lvpc2vr8s17mj6siblzc66ldp22dj7"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; +aroma_core = derive { name="aroma.core"; version="2.13.1"; sha256="1085qh092sij4c3wl3g10wc8agr13bnqbrq3k4fnm53jpa786qsx"; depends=[matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; +arqas = derive { name="arqas"; version="1.1"; sha256="1vdx9nfqkdrn6s4h90spb0g5vk7qxm5rg3mr2jkk4n67x7s5cv3x"; depends=[distr doParallel fitdistrplus foreach ggplot2 gridExtra iterators reshape]; }; arrayhelpers = derive { name="arrayhelpers"; version="0.76-20120816"; sha256="1q80dykcbqbcigv2f9xg1brfm3835i0zvs0810q6kh682a3hpqbi"; depends=[]; }; ars = derive { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; }; arules = derive { name="arules"; version="1.1-6"; sha256="0xq0j4phwqw9cx2yzxx8xx4srnjjlv75cd463x959bycsp6fzb5r"; depends=[Matrix]; }; arulesNBMiner = derive { name="arulesNBMiner"; version="0.1-4"; sha256="05vj7pzzh84xr6d0m16dhzr7bw50hkiyq99vl46zinak648my338"; depends=[arules rJava]; }; arulesSequences = derive { name="arulesSequences"; version="0.2-6"; sha256="1fvph6c8dy3hj0h63h85bzzzka8dx0cc0lcncz9svyahy1j4q3z0"; depends=[arules]; }; -arulesViz = derive { name="arulesViz"; version="1.0-0"; sha256="0g4bqfn8jya992r2wbi044v68mj508h52snrdcd5ijhdhw8xq9xc"; depends=[arules scatterplot3d vcd seriation igraph]; }; +arulesViz = derive { name="arulesViz"; version="1.0-0"; sha256="0g4bqfn8jya992r2wbi044v68mj508h52snrdcd5ijhdhw8xq9xc"; depends=[arules igraph scatterplot3d seriation vcd]; }; asVPC = derive { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; -asbio = derive { name="asbio"; version="1.1-5"; sha256="1br9rhj6nghwx54i2hpjrsdhwg8v38s66cy8fc4pg97zypdnikpj"; depends=[scatterplot3d pixmap tkrplot plotrix mvtnorm deSolve lattice multcompView]; }; +asbio = derive { name="asbio"; version="1.1-5"; sha256="1br9rhj6nghwx54i2hpjrsdhwg8v38s66cy8fc4pg97zypdnikpj"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d tkrplot]; }; ascii = derive { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; }; -ascrda = derive { name="ascrda"; version="1.15"; sha256="17anzlhcjmrk13s5gs752rsc735y5wvba6r3w1nbv0cnkpnyk8i7"; depends=[class nnet rda MASS sfsmisc e1071 pamr]; }; +ascrda = derive { name="ascrda"; version="1.15"; sha256="17anzlhcjmrk13s5gs752rsc735y5wvba6r3w1nbv0cnkpnyk8i7"; depends=[class e1071 MASS nnet pamr rda sfsmisc]; }; asd = derive { name="asd"; version="2.0"; sha256="1nnsbh6g0bhvhp6644zf2l6frr3qnls0s7y7r0g211b5zagq20z3"; depends=[mvtnorm]; }; ash = derive { name="ash"; version="1.0-14"; sha256="15x16ld25i160asqf4z4difa6zn2yfgl04j8y8nqb0djymdx7a1f"; depends=[]; }; -aspace = derive { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[splancs Hmisc shapefiles]; }; +aspace = derive { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; }; aspect = derive { name="aspect"; version="1.0-3"; sha256="12wyyr0ms8g3y96jz1x0y52dlma00j20h7hmm8m6y5p1lgk9kmcd"; depends=[]; }; +asremlPlus = derive { name="asremlPlus"; version="1.10-16"; sha256="17k1syfdsg097pawldw5mgy3a325p8k7xk99qpcivcl3pzsmw79q"; depends=[dae ggplot2]; }; assertive = derive { name="assertive"; version="0.2-4"; sha256="0xc561fi322qd5z7ss2zi69nl3i8i56w8bksgd38fpjigg0x9fwl"; depends=[knitr]; }; assertr = derive { name="assertr"; version="0.4.1"; sha256="1h77iisvyakccm7v1iqva04s1hn197sjcy28832cagqg89qlsg31"; depends=[dplyr]; }; assertthat = derive { name="assertthat"; version="0.1"; sha256="0dwsqajyglfscqilj843qfqn1ndbqpswa7b4l1d633qjk9d68qqk"; depends=[]; }; -assist = derive { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[nlme lattice]; }; +assist = derive { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[lattice nlme]; }; aster = derive { name="aster"; version="0.8-30"; sha256="0vdlimkkmd9ar5v3xrbi9gshvj980l7641brd7cqs78sqf0v71fn"; depends=[trust]; }; -aster2 = derive { name="aster2"; version="0.1"; sha256="1qbh1l2cnhvdfxaw1bv8cpj96nv03g155b1xh1vdigniwc04mssw"; depends=[]; }; +aster2 = derive { name="aster2"; version="0.2-1"; sha256="1gr9hx0mhyan0jy7wsl4ccsx9ahlvhfiq0j1xnffa4m3hzazisn5"; depends=[]; }; astro = derive { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; }; astroFns = derive { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; -astrochron = derive { name="astrochron"; version="0.4.2"; sha256="1wrpcngny2b4k0p3xagh5967yvvgxcsp87xcdp4raf4n1v3nk2xx"; depends=[multitaper IDPmisc fields]; }; +astrochron = derive { name="astrochron"; version="0.4.2"; sha256="1wrpcngny2b4k0p3xagh5967yvvgxcsp87xcdp4raf4n1v3nk2xx"; depends=[fields IDPmisc multitaper]; }; astrodatR = derive { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astrolibR = derive { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; astsa = derive { name="astsa"; version="1.3"; sha256="01bslr6hww029097244r5l4bz4v7z46gpihw39har8h0xicl6ywk"; depends=[]; }; asympTest = derive { name="asympTest"; version="0.1.3"; sha256="11nlkgws3y8xbz3yli55414a2rkk7367q9q5r2ssa61jaiimibhh"; depends=[]; }; asypow = derive { name="asypow"; version="2013.9-1"; sha256="0zd42ha30kysjhd6rwxr91k1hhsimw3py2inymbpxgyq4s890whs"; depends=[]; }; atmcmc = derive { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; -atsd = derive { name="atsd"; version="1.0.8441"; sha256="1jz2bdgvk1wamrm8r9ygprhyf0z3mdk9c1pwlb4bfmwvbnqd0yqa"; depends=[RCurl httr]; }; -attribrisk = derive { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[survival boot]; }; +atsd = derive { name="atsd"; version="1.0.8441"; sha256="1jz2bdgvk1wamrm8r9ygprhyf0z3mdk9c1pwlb4bfmwvbnqd0yqa"; depends=[httr RCurl]; }; +attribrisk = derive { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; }; audio = derive { name="audio"; version="0.1-5"; sha256="1hv4052n2r6jkzkilhkfsk4dj1xhbgk4bhba2ca9nf8ag92jkqml"; depends=[]; }; -audiolyzR = derive { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin RJSONIO plotrix]; }; +audiolyzR = derive { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audit = derive { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; autoencoder = derive { name="autoencoder"; version="1.0"; sha256="18i6b2vjhlq9f82syw3k88gm9bvklv827nflgzq0xzjnzh6z5nr8"; depends=[]; }; -automap = derive { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[sp gstat lattice reshape]; }; +automap = derive { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; autopls = derive { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; }; aws = derive { name="aws"; version="1.9-4"; sha256="11vbsg4yhnl4995m8gq5gykrlk61y3a618g2zxkc9wdf5z4xqdny"; depends=[awsMethods gsl]; }; awsMethods = derive { name="awsMethods"; version="1.0-3"; sha256="1r6rbrlc5wbljp2x9aqhhnjblnb3gjm217x0cbmrw1pa0cf7q5jq"; depends=[]; }; @@ -2464,15 +2523,16 @@ b6e6rl = derive { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaf bPeaks = derive { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bReeze = derive { name="bReeze"; version="0.4-0"; sha256="1znhmb2inbfv574adhwjwk3qf9kikrxrly4n6sfyim1z6sagnj0z"; depends=[]; }; babar = derive { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; -babel = derive { name="babel"; version="0.2-6"; sha256="1dsxjnhr0cky7wlzz8pr8rn3cldfcyrh8v6gn2ba4abr0df7i4dd"; depends=[]; }; +babel = derive { name="babel"; version="0.2-6"; sha256="1dsxjnhr0cky7wlzz8pr8rn3cldfcyrh8v6gn2ba4abr0df7i4dd"; depends=[edgeR]; }; babynames = derive { name="babynames"; version="0.1"; sha256="0qq0303mmcnpfy5630d7rqmb8rl36p7hg2z842rzd4lkhy8c2l07"; depends=[]; }; +backShift = derive { name="backShift"; version="0.1.1"; sha256="11mr2pdg63xa5yrybv91fxz69jizpshs67i7a8lb84n6ydaq1pj3"; depends=[clue igraph jointDiag matrixcalc pcalg reshape2]; }; backtest = derive { name="backtest"; version="0.3-2"; sha256="06q488pynxgis1m6rxc8hgscpy8vimffpi4aamviwb089sjzilnn"; depends=[lattice]; }; bagRboostR = derive { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; }; -bamdit = derive { name="bamdit"; version="1.1-1"; sha256="0f865yfwd2pvbkcx8jm4iyilldmprsgyqnscp1n28rp3sbdii4bl"; depends=[coda rjags]; }; +bamdit = derive { name="bamdit"; version="2.0"; sha256="1zqc2iwsa9p3lvqbf87yf6j24i0c5ybpizxp4gkaibg2llaskxki"; depends=[ggplot2 gridExtra R2jags rjags]; }; bams = derive { name="bams"; version="1.6"; sha256="1pplnpilpydxf7gcs87424cajss74q8cr9pyv2biy4pkvfql0nxl"; depends=[]; }; bandit = derive { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; barcode = derive { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; -bartMachine = derive { name="bartMachine"; version="1.2.0"; sha256="0hcz39397v2y8qgdy67i97j0z5g2qidkkf5p9ydcqp9fp5msshq7"; depends=[rJava car randomForest missForest]; }; +bartMachine = derive { name="bartMachine"; version="1.2.0"; sha256="0hcz39397v2y8qgdy67i97j0z5g2qidkkf5p9ydcqp9fp5msshq7"; depends=[car missForest randomForest rJava]; }; base64 = derive { name="base64"; version="1.1"; sha256="1wn3zj1qlgybzid4nr6hvlyqg1rp2dwfh88vxrfby2fy2ba1nl5x"; depends=[]; }; base64enc = derive { name="base64enc"; version="0.1-2"; sha256="0d2b7vl08abssfwprfiqc0yscb1gz4xlzlwwbf7y9z19wbyxizh5"; depends=[]; }; baseline = derive { name="baseline"; version="1.2-0"; sha256="12gjirk9jyq7lmfkp10kcli84bld9n9m6yhcj5z6y4iaq6d8hazq"; depends=[SparseM]; }; @@ -2480,96 +2540,98 @@ basicspace = derive { name="basicspace"; version="0.15"; sha256="11aqrai26kdwszz batade = derive { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive { name="batch"; version="1.1-4"; sha256="03v8a1hsjs6nfgmhdsv6fhy3af2vahc67wsk71wrvdxwslmn669q"; depends=[]; }; batchmeans = derive { name="batchmeans"; version="1.0-2"; sha256="126q7gyb1namhb56pi0rv9hchlghjr95pflmmpwhblqfq27djss2"; depends=[]; }; -bayesDccGarch = derive { name="bayesDccGarch"; version="1.0"; sha256="1xgznixi0wdpqbqjacf5viyz69fjd0xbsdgvkgq2d8pjbgp18s0a"; depends=[coda]; }; -bayesDem = derive { name="bayesDem"; version="2.4-1"; sha256="0s2dhy8c90smvaxcng6ixhjm7kvwwz2c4lgplynrggrm8rfb19ay"; depends=[gWidgets gWidgetsRGtk2 bayesTFR bayesLife bayesPop RGtk2 wpp2012]; }; -bayesGARCH = derive { name="bayesGARCH"; version="2.0.1"; sha256="1gz18wjikkg3yf71b1g21cx918dyz89f5m295iv8ah807cdx7vjk"; depends=[mvtnorm coda]; }; +bayesDccGarch = derive { name="bayesDccGarch"; version="1.1"; sha256="1gjba5c9vfgvhlard6k47rc2f4r497qy4ybjwr57rm3n3jb0vkl1"; depends=[coda numDeriv]; }; +bayesDem = derive { name="bayesDem"; version="2.4-1"; sha256="0s2dhy8c90smvaxcng6ixhjm7kvwwz2c4lgplynrggrm8rfb19ay"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2012]; }; +bayesGARCH = derive { name="bayesGARCH"; version="2.0.1"; sha256="1gz18wjikkg3yf71b1g21cx918dyz89f5m295iv8ah807cdx7vjk"; depends=[coda mvtnorm]; }; bayesGDS = derive { name="bayesGDS"; version="0.6.1"; sha256="0134x5knwp9pmkjyzgi1k7hjj92sym1p0zq98sizlbs0mff2p2s4"; depends=[Matrix]; }; -bayesLife = derive { name="bayesLife"; version="2.2-0"; sha256="09r915azz60ca5b4w0kkd8x8mb0cxz36lapakdmgrgxd4qax17nv"; depends=[bayesTFR wpp2012 hett car coda]; }; -bayesMCClust = derive { name="bayesMCClust"; version="1.0"; sha256="14cyvcyx3nmkbvsy7n4xjp7zvcgdhy013dv9d72y8j5dvlv82pb4"; depends=[gplots xtable mnormt MASS bayesm boa e1071 gtools]; }; -bayesPop = derive { name="bayesPop"; version="5.3-4"; sha256="1zq0vjkz4b33niwldli6sh8pgz5wsyzk59iyx5bcdpkbkprv57np"; depends=[bayesTFR bayesLife abind plyr wpp2012]; }; +bayesLife = derive { name="bayesLife"; version="2.2-0"; sha256="09r915azz60ca5b4w0kkd8x8mb0cxz36lapakdmgrgxd4qax17nv"; depends=[bayesTFR car coda hett wpp2012]; }; +bayesMCClust = derive { name="bayesMCClust"; version="1.0"; sha256="14cyvcyx3nmkbvsy7n4xjp7zvcgdhy013dv9d72y8j5dvlv82pb4"; depends=[bayesm boa e1071 gplots gtools MASS mnormt xtable]; }; +bayesPop = derive { name="bayesPop"; version="5.3-4"; sha256="1zq0vjkz4b33niwldli6sh8pgz5wsyzk59iyx5bcdpkbkprv57np"; depends=[abind bayesLife bayesTFR plyr wpp2012]; }; bayesQR = derive { name="bayesQR"; version="2.2"; sha256="0w5fg7hdwpgs2dg4vzcdsm60wkxgjxhcssw9jzig5qgdjdkm07nm"; depends=[]; }; -bayesSurv = derive { name="bayesSurv"; version="2.4"; sha256="014jxlx4w6lzzq9axdk8mwwlppmly0yj9i14zhmngdbr7mxh3f87"; depends=[survival coda smoothSurv]; }; -bayesTFR = derive { name="bayesTFR"; version="4.1-2"; sha256="17qv25yrprj099vx1jj46ycgxnc4ldx6qcqx42h5gz38qqzz2q4s"; depends=[mvtnorm MASS coda wpp2012]; }; +bayesSurv = derive { name="bayesSurv"; version="2.4"; sha256="014jxlx4w6lzzq9axdk8mwwlppmly0yj9i14zhmngdbr7mxh3f87"; depends=[coda smoothSurv survival]; }; +bayesTFR = derive { name="bayesTFR"; version="4.1-2"; sha256="17qv25yrprj099vx1jj46ycgxnc4ldx6qcqx42h5gz38qqzz2q4s"; depends=[coda MASS mvtnorm wpp2012]; }; bayesclust = derive { name="bayesclust"; version="3.1"; sha256="0zxjd64nz8c6vg6jwb2xh6kbw41a2pcmlwq5cl6k2kbplqbm2jdf"; depends=[]; }; -bayescount = derive { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[runjags rjags coda]; }; -bayesm = derive { name="bayesm"; version="2.2-5"; sha256="16cnm1i7vwviqxwq3yhj5r9a46qaanq2mb4snd0659rkia6p8h7a"; depends=[]; }; -bayesmix = derive { name="bayesmix"; version="0.7-3"; sha256="142132aslmmm35yai4n1d2hqqkczvrnm8ln9gwxvbczmxaggnc01"; depends=[rjags coda]; }; +bayescount = derive { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; +bayesm = derive { name="bayesm"; version="3.0-1"; sha256="06j7zm4y8is5csk9krjv2gvk8j25nd77wk208b8zk5qld7a9q4r5"; depends=[Rcpp RcppArmadillo]; }; +bayesmix = derive { name="bayesmix"; version="0.7-3"; sha256="142132aslmmm35yai4n1d2hqqkczvrnm8ln9gwxvbczmxaggnc01"; depends=[coda rjags]; }; bayespref = derive { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; -bayess = derive { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[MASS mnormt gplots combinat]; }; -bayou = derive { name="bayou"; version="1.0.1"; sha256="0l342a4lsn6b18i2kyk2hr50k69bb7jcw8dlnbi96yf1i58qcdri"; depends=[ape geiger phytools coda Rcpp MASS mnormt fitdistrplus denstrip Rcpp RcppArmadillo]; }; +bayess = derive { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; +bayou = derive { name="bayou"; version="1.0.1"; sha256="0l342a4lsn6b18i2kyk2hr50k69bb7jcw8dlnbi96yf1i58qcdri"; depends=[ape coda denstrip fitdistrplus geiger MASS mnormt phytools Rcpp RcppArmadillo]; }; bbefkr = derive { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; bbemkr = derive { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; }; -bbmle = derive { name="bbmle"; version="1.0.17"; sha256="1j3x2glnn0i0fc0mmafwkkqh1js90g8q7gix2vrhif0pmwinsrak"; depends=[numDeriv lattice MASS]; }; +bbmle = derive { name="bbmle"; version="1.0.17"; sha256="1j3x2glnn0i0fc0mmafwkkqh1js90g8q7gix2vrhif0pmwinsrak"; depends=[lattice MASS numDeriv]; }; bbo = derive { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; -bc3net = derive { name="bc3net"; version="1.0.2"; sha256="0iakqf4apscxb4mb5klj9qklbi25dmdd77la3ads2y882gm2nj0z"; depends=[c3net infotheo igraph Matrix lattice]; }; +bc3net = derive { name="bc3net"; version="1.0.2"; sha256="0iakqf4apscxb4mb5klj9qklbi25dmdd77la3ads2y882gm2nj0z"; depends=[c3net igraph infotheo lattice Matrix]; }; bclust = derive { name="bclust"; version="1.4"; sha256="1s04fqff5bw6d5kk0smvach6yq492dv1w0ahh9mrm2jsi2q58h7p"; depends=[]; }; -bcp = derive { name="bcp"; version="3.0.1"; sha256="08sa1az1ljsi00zmj3l7z8p1j5im1w79yjxy8k1p6ba90bck7l4h"; depends=[foreach iterators Rcpp Rcpp]; }; -bcpa = derive { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[Rcpp plyr Rcpp]; }; +bcp = derive { name="bcp"; version="3.0.1"; sha256="08sa1az1ljsi00zmj3l7z8p1j5im1w79yjxy8k1p6ba90bck7l4h"; depends=[foreach iterators Rcpp]; }; +bcpa = derive { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; }; bcpmeta = derive { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; }; -bcrm = derive { name="bcrm"; version="0.4.4"; sha256="0gcigc7505fsk1m70df3n0dz553adkbs8yz2bhskb4qrw4gbmvr7"; depends=[mvtnorm ggplot2]; }; -bcv = derive { name="bcv"; version="1.0"; sha256="053if27miv46mbkni6pcpdpz0l336r5l95k7927dqalnri894xwz"; depends=[]; }; +bcrm = derive { name="bcrm"; version="0.4.4"; sha256="0gcigc7505fsk1m70df3n0dz553adkbs8yz2bhskb4qrw4gbmvr7"; depends=[ggplot2 mvtnorm]; }; +bcrypt = derive { name="bcrypt"; version="0.1"; sha256="0myrxdayrjdx5zvsvdv1cj1cfjnsd0llrvffw7spdnmryli7wbfh"; depends=[openssl]; }; +bcv = derive { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; }; bda = derive { name="bda"; version="5.1.3"; sha256="0v2xki9a1j6y42x03a3rrm746xx4qd3ris1m0k7alh25j3ayhs3p"; depends=[]; }; -bde = derive { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[shiny ggplot2]; }; +bde = derive { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; bdoc = derive { name="bdoc"; version="1.2"; sha256="15d7grc0a1hakkxhgbm2gp0awggzlmsp8zf8abj5bgfih63gcmj2"; depends=[]; }; bdpv = derive { name="bdpv"; version="1.1"; sha256="0i6wdf27243ch8pn2chqriwxjg3g72wbvzlx52mz4ahw700xjc7n"; depends=[]; }; bdscale = derive { name="bdscale"; version="1.2"; sha256="0j2h7ainfnh78szp355didbkmcl6d5vz1di8nznjarwxncrbgc6g"; depends=[ggplot2 scales]; }; bdsmatrix = derive { name="bdsmatrix"; version="1.3-2"; sha256="16qhfwk0r1snm9hg32qwz7hizkpwc32m723hjm23m2026gvz2nwy"; depends=[]; }; -bdvis = derive { name="bdvis"; version="0.1.0"; sha256="1f837i48gmspx9xrnxzsgdbg6ykxmvkp8l20y19yd9iakhv7k3jy"; depends=[maps plotrix sqldf plyr taxize treemap ggplot2]; }; -bdynsys = derive { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[plm Formula MASS Hmisc deSolve pracma caTools matrixStats]; }; -beadarrayFilter = derive { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[RColorBrewer]; }; -beadarrayMSV = derive { name="beadarrayMSV"; version="1.1.0"; sha256="0785vmjsli37hjyppk7hlqmn0b683s1apysx9dghbw4h6rgvr8n9"; depends=[rggobi]; }; +bdvis = derive { name="bdvis"; version="0.1.0"; sha256="1f837i48gmspx9xrnxzsgdbg6ykxmvkp8l20y19yd9iakhv7k3jy"; depends=[ggplot2 maps plotrix plyr sqldf taxize treemap]; }; +bdynsys = derive { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; }; +beadarrayFilter = derive { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; +beadarrayMSV = derive { name="beadarrayMSV"; version="1.1.0"; sha256="0785vmjsli37hjyppk7hlqmn0b683s1apysx9dghbw4h6rgvr8n9"; depends=[Biobase geneplotter limma rggobi]; }; beanplot = derive { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; }; -bear = derive { name="bear"; version="2.6.4"; sha256="1v5rcb7aqzc7zjbbwwcy02z79crxq90mxs32k2gfvf7jzky09hpy"; depends=[reshape nlme gdata ICSNP sciplot plotrix ggplot2 png]; }; -beepr = derive { name="beepr"; version="1.1"; sha256="187gww50yc8hzrzwz6j9ib101196g6ci9fx3dqyhg764ydn8if1n"; depends=[stringr audio]; }; +bear = derive { name="bear"; version="2.6.4"; sha256="1v5rcb7aqzc7zjbbwwcy02z79crxq90mxs32k2gfvf7jzky09hpy"; depends=[gdata ggplot2 ICSNP nlme plotrix png reshape sciplot]; }; +beepr = derive { name="beepr"; version="1.2"; sha256="0w4szy3rgj1bdcanxbcb9agyw38jqp0hc7qsn7j9700vh20zqbln"; depends=[audio stringr]; }; beeswarm = derive { name="beeswarm"; version="0.2.0"; sha256="05yhddljmls35xdffp7iikgwh3jh5s4b7w5d2gw89w7l8hr62ypz"; depends=[]; }; benchden = derive { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; -benchmark = derive { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[proto ggplot2 relations psychotools reshape scales plyr]; }; +benchmark = derive { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[ggplot2 plyr proto psychotools relations reshape scales]; }; benford_analysis = derive { name="benford.analysis"; version="0.1.1"; sha256="00ynk1af5nbq8bn8y77sckx4w32g5zxcp06pdpcxwvp38d7hxhvc"; depends=[data_table]; }; bentcableAR = derive { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; ber = derive { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; }; -berryFunctions = derive { name="berryFunctions"; version="1.7.1"; sha256="1xpmpbls0vjyi51k7sd1v8s7lp4s1549javcg3yinmvxp9xhwfkx"; depends=[]; }; +berryFunctions = derive { name="berryFunctions"; version="1.8.1"; sha256="0plksyprbc5537005aw0yswwpahxk23c16lrq77zspzfa60i2vf0"; depends=[]; }; bestglm = derive { name="bestglm"; version="0.34"; sha256="0b6lj91v0vww0fy50sqdn99izkxqbhv83y3zkyrrpvdzwia4dg9w"; depends=[leaps]; }; betafam = derive { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; betapart = derive { name="betapart"; version="1.3"; sha256="0h2y2c3q6njzh2rlxh8izgkrq9y7abkbb0b13f2iyj9pnalvdv52"; depends=[ape geometry picante rcdd]; }; -betaper = derive { name="betaper"; version="1.1-0"; sha256="1gr533iw71n2sq8gga9kzlah7k28cnlwxb2yh562gw6mh1axmidm"; depends=[vegan ellipse]; }; +betaper = derive { name="betaper"; version="1.1-0"; sha256="1gr533iw71n2sq8gga9kzlah7k28cnlwxb2yh562gw6mh1axmidm"; depends=[ellipse vegan]; }; betareg = derive { name="betareg"; version="3.0-5"; sha256="1zpj1x5jvkn7d8jln16vr4xziahng0f54vb4gc4vs03z7c853i4a"; depends=[flexmix Formula lmtest modeltools sandwich]; }; betas = derive { name="betas"; version="0.1.1"; sha256="1v85r6lrk21viwzam42gi42bgbwh5ibn3dpbh3aqrf3dnn1rdsyd"; depends=[robust]; }; betategarch = derive { name="betategarch"; version="3.2"; sha256="0x3l1zvdp8r7mam7fvdlh1w3dwpjwj86n0ysfk8g824p4mn2wsgv"; depends=[zoo]; }; bethel = derive { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; }; bezier = derive { name="bezier"; version="1.1"; sha256="1bhqf1zbshkf1x8mgqp4mkgdxk9jxi51xj6i47kqkyn9gbdzch0c"; depends=[]; }; -bfa = derive { name="bfa"; version="0.3.1"; sha256="02vnbm77blllb74kll8w1i91k0llk43vq60aqjwpc5kqmzy652pk"; depends=[coda Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; -bfast = derive { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[strucchange zoo forecast sp raster]; }; -bfp = derive { name="bfp"; version="0.0-27"; sha256="08hlr33dwwjc4ag8vfsa3w4rcsc2093j8zwb05xkkl5nwqsq3mq0"; depends=[Rcpp Rcpp]; }; -bgeva = derive { name="bgeva"; version="0.3"; sha256="0isijl43kmg4x7mdnvz0lrxr87f68dl4jx7gmlg70m8r6kk8cfqn"; depends=[mgcv magic trust]; }; +bfa = derive { name="bfa"; version="0.3.1"; sha256="02vnbm77blllb74kll8w1i91k0llk43vq60aqjwpc5kqmzy652pk"; depends=[coda Rcpp RcppArmadillo]; }; +bfast = derive { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; }; +bfp = derive { name="bfp"; version="0.0-27"; sha256="08hlr33dwwjc4ag8vfsa3w4rcsc2093j8zwb05xkkl5nwqsq3mq0"; depends=[Rcpp]; }; +bgeva = derive { name="bgeva"; version="0.3"; sha256="0isijl43kmg4x7mdnvz0lrxr87f68dl4jx7gmlg70m8r6kk8cfqn"; depends=[magic mgcv trust]; }; bglm = derive { name="bglm"; version="1.0"; sha256="1ln5clsfhpzjkm6cjil0lfqg687b0xxbvw1hcvangc0c0s314mrz"; depends=[mvtnorm]; }; -bgmm = derive { name="bgmm"; version="1.7"; sha256="00bjwmgqvz053yczvllf1nxy1g88fgwrrzhnw309f2yjr1qvjbgg"; depends=[mvtnorm car lattice combinat]; }; +bgmm = derive { name="bgmm"; version="1.7"; sha256="00bjwmgqvz053yczvllf1nxy1g88fgwrrzhnw309f2yjr1qvjbgg"; depends=[car combinat lattice mvtnorm]; }; biasbetareg = derive { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bibtex = derive { name="bibtex"; version="0.4.0"; sha256="0sy1czwjff3kdfnmlkp036qlnw8dzdl5al7izy1cc0535hsijv0d"; depends=[]; }; -biclust = derive { name="biclust"; version="1.1.0"; sha256="0ffsgjg7dvr5nh238abhawz9k775szh8lxl75bqjvxgqiv07f3hc"; depends=[MASS colorspace lattice flexclust]; }; -bifactorial = derive { name="bifactorial"; version="1.4.7"; sha256="187zlsqph7m63wf6wajvs6a4a08aax9hiqssgvma6cpkpisfiz4k"; depends=[mvtnorm multcomp lattice Rcpp Rcpp]; }; +biclust = derive { name="biclust"; version="1.2.0"; sha256="03vkj7zp3dl4zbv2gzv9pahcd1018lbv4ixghvv1g0fsbndrybdg"; depends=[colorspace flexclust lattice MASS]; }; +bifactorial = derive { name="bifactorial"; version="1.4.7"; sha256="187zlsqph7m63wf6wajvs6a4a08aax9hiqssgvma6cpkpisfiz4k"; depends=[lattice multcomp mvtnorm Rcpp]; }; bigGP = derive { name="bigGP"; version="0.1-5"; sha256="0hlfylwinkwz2s8wgqf6qwxrrdx5a02ln13y4arfwwlqi1kw0s4q"; depends=[Rmpi]; }; -bigRR = derive { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[hglm DatABEL]; }; -bigalgebra = derive { name="bigalgebra"; version="0.8.4"; sha256="19rv552ac0q9djc1yvpldkc0lipdf6q143m9dnndpsqs7ayqlr4g"; depends=[bigmemory bigmemory BH]; }; -biganalytics = derive { name="biganalytics"; version="1.1.1"; sha256="0g45b293c1z9n2z9ab66jsy8yaiqm7bbs2d6pglzwgmmdvwy03qd"; depends=[bigmemory BH bigmemory]; }; -bigdata = derive { name="bigdata"; version="0.1"; sha256="1n1zcjhvb2s87d7fkcm95x11ss4b8pczza0n55gxjv4przfiq0in"; depends=[glmnet Matrix lattice]; }; +bigRR = derive { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[DatABEL hglm]; }; +bigalgebra = derive { name="bigalgebra"; version="0.8.4"; sha256="19rv552ac0q9djc1yvpldkc0lipdf6q143m9dnndpsqs7ayqlr4g"; depends=[BH bigmemory]; }; +biganalytics = derive { name="biganalytics"; version="1.1.1"; sha256="0g45b293c1z9n2z9ab66jsy8yaiqm7bbs2d6pglzwgmmdvwy03qd"; depends=[BH bigmemory]; }; +bigdata = derive { name="bigdata"; version="0.1"; sha256="1n1zcjhvb2s87d7fkcm95x11ss4b8pczza0n55gxjv4przfiq0in"; depends=[glmnet lattice Matrix]; }; biglars = derive { name="biglars"; version="1.0.2"; sha256="17zs25dvlja9ynx2fm5f4nmgkx4mnyqs5iscwsyahr6qigx1rz9x"; depends=[ff]; }; biglm = derive { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; }; -bigmemory = derive { name="bigmemory"; version="4.4.6"; sha256="1pplnpxqg380l5mjgz0ak4ipsx7x54339n2wr3dd29xv3w2fb5rp"; depends=[bigmemory_sri BH BH]; }; +bigmemory = derive { name="bigmemory"; version="4.4.6"; sha256="1pplnpxqg380l5mjgz0ak4ipsx7x54339n2wr3dd29xv3w2fb5rp"; depends=[BH bigmemory_sri]; }; bigmemory_sri = derive { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; -bigpca = derive { name="bigpca"; version="1.0"; sha256="1s4qmg7xl8z0sv1b1vfqw0r5cvlbrxx1n0m03ira8fpykcck2clm"; depends=[reader NCmisc bigmemory biganalytics bigmemory_sri BH irlba]; }; -bigrf = derive { name="bigrf"; version="0.1-11"; sha256="0lazi8jk8aapdyyynd5yfcbn4jpjyxh8l64ayd0jj3nisl6hvmdh"; depends=[bigmemory foreach bigmemory BH]; }; -bigrquery = derive { name="bigrquery"; version="0.1.0"; sha256="15ibgi6bqvn0ydq8jx1xhwkwpwwyd7w4f2ams2gpafpysc2f2ks6"; depends=[httr jsonlite assertthat R6 dplyr]; }; +bigml = derive { name="bigml"; version="0.1.2"; sha256="0vl5krjbgckknxwl26b2hn63jhb80zbn7abpckhxzxfxzncpnfz9"; depends=[plyr RCurl RJSONIO]; }; +bigpca = derive { name="bigpca"; version="1.0"; sha256="1s4qmg7xl8z0sv1b1vfqw0r5cvlbrxx1n0m03ira8fpykcck2clm"; depends=[BH biganalytics bigmemory bigmemory_sri irlba NCmisc reader]; }; +bigrf = derive { name="bigrf"; version="0.1-11"; sha256="0lazi8jk8aapdyyynd5yfcbn4jpjyxh8l64ayd0jj3nisl6hvmdh"; depends=[BH bigmemory foreach]; }; +bigrquery = derive { name="bigrquery"; version="0.1.0"; sha256="15ibgi6bqvn0ydq8jx1xhwkwpwwyd7w4f2ams2gpafpysc2f2ks6"; depends=[assertthat dplyr httr jsonlite R6]; }; bigsplines = derive { name="bigsplines"; version="1.0-6"; sha256="03gan2wrsi2hfxhn3l05qd0x04x8ymkab9aqpfbfn59m296xhd3m"; depends=[]; }; -bigtabulate = derive { name="bigtabulate"; version="1.1.2"; sha256="0vp873r3gww6kfkjdm87qgcdi85362kq946lvs45ggvyv7iaw0wa"; depends=[bigmemory BH bigmemory]; }; +bigtabulate = derive { name="bigtabulate"; version="1.1.2"; sha256="0vp873r3gww6kfkjdm87qgcdi85362kq946lvs45ggvyv7iaw0wa"; depends=[BH bigmemory]; }; bild = derive { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv5cdndyxfsxp77l6nc3zc6ixna8"; depends=[]; }; bimetallic = derive { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; binGroup = derive { name="binGroup"; version="1.1-0"; sha256="1sf7prg2x1ryynf1kz7jr50svmga7kjgd5pi9qm3g2hyimz8mvs4"; depends=[]; }; binMto = derive { name="binMto"; version="0.0-6"; sha256="1h9s42wk848x15f4glhsh2iikpra64miwlia6xz5dqlzbs4vw86k"; depends=[mvtnorm]; }; binda = derive { name="binda"; version="1.0.2"; sha256="1hfqx79pq9bn37j8rwv11wsv6d9prph26p2hqmnxilsdxr953ib2"; depends=[entropy]; }; bindata = derive { name="bindata"; version="0.9-19"; sha256="15ya21fz1kvq4qsppkn9ypiqvaq8q4vszdcgcymampa7zc07z2ld"; depends=[e1071 mvtnorm]; }; -binequality = derive { name="binequality"; version="0.6.1"; sha256="18pcz5b65zk6fwh597pcbpyy0j7gkxp5swwadxvsa3cainvyd07n"; depends=[gamlss gamlss_cens gamlss_dist survival ineq]; }; +binequality = derive { name="binequality"; version="0.6.1"; sha256="18pcz5b65zk6fwh597pcbpyy0j7gkxp5swwadxvsa3cainvyd07n"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; }; bingat = derive { name="bingat"; version="1.1"; sha256="1pb1yy1xrfvh71pg237lkmi56p8pbam60rii5i5km1i960lq0wc1"; depends=[matrixStats network]; }; -binhf = derive { name="binhf"; version="1.0-1"; sha256="0l8925bj6mjv2y7fn76zh2g8xjig3kbbdy4jl0ip3gd9kbrakl9k"; depends=[wavethresh adlift]; }; +binhf = derive { name="binhf"; version="1.0-1"; sha256="0l8925bj6mjv2y7fn76zh2g8xjig3kbbdy4jl0ip3gd9kbrakl9k"; depends=[adlift wavethresh]; }; binom = derive { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; binomSamSize = derive { name="binomSamSize"; version="0.1-3"; sha256="0hryaf0y3yjxp84c0k80mhxj8zzlad697bv2yrvcjvllkzdvzbm7"; depends=[binom]; }; binomTools = derive { name="binomTools"; version="1.0-1"; sha256="14594i7iapd6hy4j36yb88xmrbmczg8zgbs0b6k0adnmqf83bn4v"; depends=[]; }; @@ -2580,133 +2642,133 @@ binseqtest = derive { name="binseqtest"; version="1.0"; sha256="103nbi3zq9m63266 bio_infer = derive { name="bio.infer"; version="1.3-3"; sha256="14pdv6yk0sk6v8g9p6bazbp7mr3wmxgfi6p6dj9n77lhqlvjcgm9"; depends=[]; }; bio3d = derive { name="bio3d"; version="2.2-2"; sha256="0sqwl27n15sbablw4mcqgf0w2k28jc59wf8yqxrmqbg8cckfsh9j"; depends=[]; }; bioPN = derive { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; -biogas = derive { name="biogas"; version="1.0"; sha256="0c7ayhmy69k08f32i1agri349wm1addibw4xp9rjq9cmkdhazvbd"; depends=[]; }; -biogram = derive { name="biogram"; version="1.1"; sha256="04nkm972x1nzlacfjfk3i4gsqbfhrfaygmmw13hrp47j8snv8r26"; depends=[slam bit]; }; -biom = derive { name="biom"; version="0.3.12"; sha256="18fmzp2zqjk7wm39yjlln7mpw5vw01m5kmivjb26sd6725w7zlaa"; depends=[plyr RJSONIO Matrix]; }; -biomod2 = derive { name="biomod2"; version="3.1-64"; sha256="0ymqscsdp5plhnzyl256ws9namqdcdxq3w5g79ymfpymfav10h3a"; depends=[sp raster reshape ggplot2 abind rasterVis pROC nnet gbm mda randomForest rpart MASS]; }; +biogas = derive { name="biogas"; version="1.0.1"; sha256="0fjxfj4c4clyp4gkzm0dl5ls7pbyaxmff56dw59wswijm4na2il7"; depends=[]; }; +biogram = derive { name="biogram"; version="1.1"; sha256="04nkm972x1nzlacfjfk3i4gsqbfhrfaygmmw13hrp47j8snv8r26"; depends=[bit slam]; }; +biom = derive { name="biom"; version="0.3.12"; sha256="18fmzp2zqjk7wm39yjlln7mpw5vw01m5kmivjb26sd6725w7zlaa"; depends=[Matrix plyr RJSONIO]; }; +biomod2 = derive { name="biomod2"; version="3.1-64"; sha256="0ymqscsdp5plhnzyl256ws9namqdcdxq3w5g79ymfpymfav10h3a"; depends=[abind gbm ggplot2 MASS mda nnet pROC randomForest raster rasterVis reshape rpart sp]; }; bionetdata = derive { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; biopara = derive { name="biopara"; version="1.5"; sha256="1fhhs6lkm3iphlkx6wklh9sgr1mkjkka9wv2m8fnk0xw01bdsyl5"; depends=[]; }; -biorxivr = derive { name="biorxivr"; version="0.1.0"; sha256="0277kand29vsxczjg1wnlvx494w67x6pd1ybg735ni62is567adg"; depends=[XML]; }; -bios2mds = derive { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap e1071 scales cluster rgl]; }; +biorxivr = derive { name="biorxivr"; version="0.1.1"; sha256="0v2jmqpdcci3wwpcrakqcssahy3yx07s265axs14615w74dgd4kl"; depends=[XML]; }; +bios2mds = derive { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap cluster e1071 rgl scales]; }; biosignalEMG = derive { name="biosignalEMG"; version="1.0.2"; sha256="0ywb59w3rgac59gif1jba8qi7rjdsdj7y5czj7kv8lf01vd5dl3l"; depends=[]; }; -biotools = derive { name="biotools"; version="2.1"; sha256="15ncx700v5ignr3gggz5zfspskzpj3kpzsy6rg2y4pnjm1vlndgj"; depends=[rpanel tkrplot MASS boot]; }; -bipartite = derive { name="bipartite"; version="2.05"; sha256="05w3ypdxy2lfygdlvg9xv88dpsf21i60rsbvvz058zwpfzr39hfh"; depends=[vegan sna fields igraph MASS permute]; }; -biplotbootGUI = derive { name="biplotbootGUI"; version="1.0"; sha256="0pgm31nhh1b78a8ciqjxw7gf3j7hh9wjc3myj29jpl92flbqmsw0"; depends=[rgl tkrplot vegan tcltk2]; }; +biotools = derive { name="biotools"; version="2.1"; sha256="15ncx700v5ignr3gggz5zfspskzpj3kpzsy6rg2y4pnjm1vlndgj"; depends=[boot MASS rpanel tkrplot]; }; +bipartite = derive { name="bipartite"; version="2.05"; sha256="05w3ypdxy2lfygdlvg9xv88dpsf21i60rsbvvz058zwpfzr39hfh"; depends=[fields igraph MASS permute sna vegan]; }; +biplotbootGUI = derive { name="biplotbootGUI"; version="1.0"; sha256="0pgm31nhh1b78a8ciqjxw7gf3j7hh9wjc3myj29jpl92flbqmsw0"; depends=[rgl tcltk2 tkrplot vegan]; }; birdring = derive { name="birdring"; version="1.2"; sha256="1jhhvdipsx3kw8n6gw6amm1vq0m83l48dkark9vvi2hpd730ca1y"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; }; birk = derive { name="birk"; version="1.3.0"; sha256="02h8vh2r1ilmfgx1j3yw9jlzwshqh70nac28qzq1f5mpqll8z1sg"; depends=[]; }; bisectr = derive { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; }; -bisoreg = derive { name="bisoreg"; version="1.4"; sha256="1ianhk5vrzhwb9ymzvlx9701p5c4iasxyq7nhrvm815dm15rf2wf"; depends=[bootstrap monreg R2WinBUGS coda]; }; +bisoreg = derive { name="bisoreg"; version="1.4"; sha256="1ianhk5vrzhwb9ymzvlx9701p5c4iasxyq7nhrvm815dm15rf2wf"; depends=[bootstrap coda monreg R2WinBUGS]; }; bit = derive { name="bit"; version="1.1-12"; sha256="0a6ig6nnjzq80r2ll4hc74za3xwzbzig6wlyb4dby0knzf3iqa6f"; depends=[]; }; bit64 = derive { name="bit64"; version="0.9-4"; sha256="1w734l5ayr7w17a3gk2kmkqwz7v5jm830kfhyqmnd15i816lnjb9"; depends=[bit]; }; bitops = derive { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; }; bivarRIpower = derive { name="bivarRIpower"; version="1.2"; sha256="0vgi0476rwali6k8bkp317jawzq5pf04v75xmycpmadb7drnpzy0"; depends=[]; }; biwavelet = derive { name="biwavelet"; version="0.17.10"; sha256="0rvlpqfrgajaw5bifc3103ixj2akdhpcxqhgw9fv0r1c5kv98qz0"; depends=[fields]; }; -biwt = derive { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[rrcov MASS]; }; +biwt = derive { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; bizdays = derive { name="bizdays"; version="0.2.2"; sha256="1n2bh7vy0fhxq20s4lnbhgig1012di34kfl61i0ap7pc6464kg8d"; depends=[]; }; blender = derive { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blighty = derive { name="blighty"; version="3.1-4"; sha256="1fkz3vfcnciy6rfybddcp5j744dcsdpmf7cln2jky0krag8pjzpn"; depends=[]; }; -blkergm = derive { name="blkergm"; version="1.1"; sha256="0giknhcl14b4djn5k5v5n33b7bc3f8x6lx2h4jr25kpd89aynhq5"; depends=[network ergm statnet_common ergm]; }; +blkergm = derive { name="blkergm"; version="1.1"; sha256="0giknhcl14b4djn5k5v5n33b7bc3f8x6lx2h4jr25kpd89aynhq5"; depends=[ergm network statnet_common]; }; blm = derive { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; }; -blme = derive { name="blme"; version="1.0-2"; sha256="11m98j9xr6w0hfcss4bbx2aa34gnc5p9if9r8ilw9ify18by77np"; depends=[lme4]; }; -blmeco = derive { name="blmeco"; version="1.0"; sha256="0shhyvqq88i0nr6wdf78rlqk4c91jv26nrb19jcjcw2wxv1mnazq"; depends=[MASS MuMIn arm lme4]; }; +blme = derive { name="blme"; version="1.0-4"; sha256="1ca2b0248k0fj3lczn9shfjplz1sl4ay4v6djldizp2ch2vwdgy2"; depends=[lme4]; }; +blmeco = derive { name="blmeco"; version="1.0"; sha256="0shhyvqq88i0nr6wdf78rlqk4c91jv26nrb19jcjcw2wxv1mnazq"; depends=[arm lme4 MASS MuMIn]; }; blockTools = derive { name="blockTools"; version="0.6-2"; sha256="0h04179ybklwbs69rg73p5h09fi3vzagh845r00ivw4iv18anq40"; depends=[MASS]; }; -blockcluster = derive { name="blockcluster"; version="3.0.2"; sha256="1qd92lj3ckrj7cvl9zs85igb0974wy5s4zwdnvfyvrsi2bqi3qp8"; depends=[Rcpp Rcpp RcppEigen]; }; +blockcluster = derive { name="blockcluster"; version="3.0.2"; sha256="1qd92lj3ckrj7cvl9zs85igb0974wy5s4zwdnvfyvrsi2bqi3qp8"; depends=[Rcpp RcppEigen]; }; blockmatrix = derive { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; blockmodeling = derive { name="blockmodeling"; version="0.1.8"; sha256="0x71w1kysj9x6v6vsirq0nndsf6f3wzkf8pbsq3x68sf4cdji1xl"; depends=[]; }; -blockmodels = derive { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[Rcpp digest Rcpp RcppArmadillo]; }; +blockmodels = derive { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive { name="blockrand"; version="1.3"; sha256="1090vb26w6s7iqjcal0xbb3qb6p6j46a5w25f1wjdppd1spvh7f9"; depends=[]; }; blocksdesign = derive { name="blocksdesign"; version="1.6"; sha256="1d188c1lyf5zvdffcw3w7imzjxxmr7nmr29zj9z1b64p1ddrryh4"; depends=[crossdes]; }; -blowtorch = derive { name="blowtorch"; version="1.0.2"; sha256="0ymhkzfdrfcsq2qc5hbn9i0p58xqf90vwd46960cszxacyzzcnrb"; depends=[ggplot2 foreach iterators]; }; -blsAPI = derive { name="blsAPI"; version="0.1.1"; sha256="1d9mzhhr9yrx1kca6mzrq3gqqismv2q5wf1zx76srqvpaja2wszq"; depends=[rjson RCurl]; }; +blowtorch = derive { name="blowtorch"; version="1.0.2"; sha256="0ymhkzfdrfcsq2qc5hbn9i0p58xqf90vwd46960cszxacyzzcnrb"; depends=[foreach ggplot2 iterators]; }; +blsAPI = derive { name="blsAPI"; version="0.1.1"; sha256="1d9mzhhr9yrx1kca6mzrq3gqqismv2q5wf1zx76srqvpaja2wszq"; depends=[RCurl rjson]; }; bmd = derive { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; }; -bmem = derive { name="bmem"; version="1.5"; sha256="1miiki743rraralk9dp12dsjjajj3iizcrfwmplf6xas6pl8sfk6"; depends=[Amelia MASS lavaan sem snowfall]; }; -bmk = derive { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda plyr functional]; }; +bmem = derive { name="bmem"; version="1.5"; sha256="1miiki743rraralk9dp12dsjjajj3iizcrfwmplf6xas6pl8sfk6"; depends=[Amelia lavaan MASS sem snowfall]; }; +bmk = derive { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; }; bmmix = derive { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; bmp = derive { name="bmp"; version="0.2"; sha256="059ps1sy02b22xs138ba99fkxq92vzgfbyf2z5pyxwzszahgy869"; depends=[]; }; -bmrm = derive { name="bmrm"; version="3.0"; sha256="0ix5hfsvs2vnca0l1aflynddw6z85cqdyxn0y7xynkkapk182g4p"; depends=[lpSolve LowRankQP]; }; -bnlearn = derive { name="bnlearn"; version="3.8"; sha256="1jy47sy8pqjwjykdrcfrrdjzrgwgvmzpjxcnh73pgaa2scm9lpk6"; depends=[]; }; +bmrm = derive { name="bmrm"; version="3.0"; sha256="0ix5hfsvs2vnca0l1aflynddw6z85cqdyxn0y7xynkkapk182g4p"; depends=[LowRankQP lpSolve]; }; +bnlearn = derive { name="bnlearn"; version="3.8.1"; sha256="07lh67nw7wpjimim44zpw8h1rq4yqa2sdjcwj95bmyc25hlzv1s1"; depends=[]; }; bnormnlr = derive { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpmr = derive { name="bnpmr"; version="1.1"; sha256="0hvwkdbs2p2l0iw0425nca614qy3gsqfq4mifipy98yxxvgh8qgc"; depends=[]; }; boa = derive { name="boa"; version="1.1.7-2"; sha256="1n7i0i8jq2sa1kzhbgyqzl9d53wja7fsxd7rligc8xjm0sdsb386"; depends=[]; }; boilerpipeR = derive { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; }; -bold = derive { name="bold"; version="0.2.6"; sha256="15hnbspp5s293v2jykmirf9rvdgpkd71h431gizz71ssayanzp67"; depends=[XML httr stringr assertthat jsonlite reshape plyr]; }; -boolean3 = derive { name="boolean3"; version="3.1.6"; sha256="00s6ljhqy8gpwa3kxfnm500r528iml53q364bjcl4dli2x85wa9p"; depends=[optimx numDeriv lattice rgenoud mvtnorm rlecuyer]; }; +bold = derive { name="bold"; version="0.2.6"; sha256="15hnbspp5s293v2jykmirf9rvdgpkd71h431gizz71ssayanzp67"; depends=[assertthat httr jsonlite plyr reshape stringr XML]; }; +boolean3 = derive { name="boolean3"; version="3.1.6"; sha256="00s6ljhqy8gpwa3kxfnm500r528iml53q364bjcl4dli2x85wa9p"; depends=[lattice mvtnorm numDeriv optimx rgenoud rlecuyer]; }; boostSeq = derive { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; }; boostr = derive { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; -boot = derive { name="boot"; version="1.3-15"; sha256="0pyznvhbb8237nqab6ylmis73q0s3fgmf65fmh0rr3ryljvzp6sq"; depends=[]; }; +boot = derive { name="boot"; version="1.3-16"; sha256="1fdp3yccsffqpm209dy11085i81cj7g36l34bb94rmd27mqiwrfi"; depends=[]; }; bootES = derive { name="bootES"; version="1.01"; sha256="00y901d5cjdpzras5w6mv851h5zgp36m5ib6dazs4vqrfpqymva8"; depends=[boot]; }; bootLR = derive { name="bootLR"; version="0.9"; sha256="0p4hq8nfdd8jw8r8dmlb6va4g7jjnkbsah69hissa9lqawbj9pi7"; depends=[boot]; }; bootRes = derive { name="bootRes"; version="1.2.3"; sha256="0bb7w6wyp9wjrrdcyd3wh44f5sgdj07p5sz5anhdnm97rn1ib6dz"; depends=[]; }; -bootSVD = derive { name="bootSVD"; version="0.2"; sha256="1b31gxlbysng5ysa18mzlp3vlc9jhn51hia0z1j9g47wi0r0f274"; depends=[ff]; }; +bootSVD = derive { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; -bootnet = derive { name="bootnet"; version="0.1"; sha256="18bx0za81z8za0hswj1qwl7a721xbvfpjz0hsih7glf6n5hn0cyp"; depends=[ggplot2 IsingFit qgraph dplyr gtools corpcor]; }; +bootnet = derive { name="bootnet"; version="0.1"; sha256="18bx0za81z8za0hswj1qwl7a721xbvfpjz0hsih7glf6n5hn0cyp"; depends=[corpcor dplyr ggplot2 gtools IsingFit qgraph]; }; bootruin = derive { name="bootruin"; version="1.2-1"; sha256="1ii1fcj8sn9x82w23yfzxkgngrgsncnyrik4gcqn6kv7sl58f4r3"; depends=[]; }; bootsPLS = derive { name="bootsPLS"; version="1.0.2"; sha256="1d2jn3c74d31rp37qpr8j4rviwg1gmkqppx5pyw0mm37vdajffri"; depends=[mixOmics]; }; bootspecdens = derive { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive { name="bootstrap"; version="2015.2"; sha256="1h068az4sz49ysb0wcas1hfj7jkn13zdmk087scqj5iyqzr459xf"; depends=[]; }; boottol = derive { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; -boral = derive { name="boral"; version="0.6"; sha256="0ldd5slj90xsch498brll6sjbl6j8fb6a28vfciykr2364mgmahp"; depends=[coda R2jags mvtnorm fishMod MASS]; }; -boss = derive { name="boss"; version="2.1"; sha256="1knsnf19b1xvvq20pjiv56anbnk0d51aq6z3ikhi8y92ijkzh0y8"; depends=[lme4 geepack Matrix ncdf]; }; +boral = derive { name="boral"; version="0.6"; sha256="0ldd5slj90xsch498brll6sjbl6j8fb6a28vfciykr2364mgmahp"; depends=[coda fishMod MASS mvtnorm R2jags]; }; +boss = derive { name="boss"; version="2.1"; sha256="1knsnf19b1xvvq20pjiv56anbnk0d51aq6z3ikhi8y92ijkzh0y8"; depends=[geepack lme4 Matrix ncdf]; }; boussinesq = derive { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boxplotdbl = derive { name="boxplotdbl"; version="1.2.2"; sha256="01bvp6vjnlhc4lndxwd705bzlsh7zq0i9v66mxszrcz6v8hb9rwi"; depends=[]; }; -boxr = derive { name="boxr"; version="0.2.5"; sha256="03lxdhjajjdpf58c50j1dn4i4bqy8s7h5xgr6m87r7g1v91x23y4"; depends=[httr httpuv assertthat stringr dplyr digest jsonlite]; }; -bpca = derive { name="bpca"; version="1.2-2"; sha256="05ldz6b2s379mymj8jzvia9x6gj047gwsxvnv3zj9x8b1hvndnd6"; depends=[scatterplot3d rgl]; }; -bpcp = derive { name="bpcp"; version="1.2.4"; sha256="06q8zkf7z31ax3pb2xmww3l3axcmhvmgrfri1aikhi7ifgcfc979"; depends=[]; }; +boxr = derive { name="boxr"; version="0.2.6"; sha256="1b7xvblw2a1p8sr1gxrak404d43haa4kk7blnyir1pql8dcw24jd"; depends=[assertthat digest dplyr httpuv httr jsonlite stringr]; }; +bpca = derive { name="bpca"; version="1.2-2"; sha256="05ldz6b2s379mymj8jzvia9x6gj047gwsxvnv3zj9x8b1hvndnd6"; depends=[rgl scatterplot3d]; }; +bpcp = derive { name="bpcp"; version="1.2.5"; sha256="0dzsj0xhvn7jc8nb54191hwpw4sm7g13af5y3sgp9bhvcym8p31q"; depends=[]; }; bpkde = derive { name="bpkde"; version="1.0-7"; sha256="1ls6rwmbgb2vzsjn34r87ab8rnz3ls61g6f4x3jpglbk0j91f0h8"; depends=[]; }; bqtl = derive { name="bqtl"; version="1.0-30"; sha256="1v1p3wvqm5hmwpnjqaz8vlpzm036gpzpxsvy7m0v4x7nc5vrq7g6"; depends=[]; }; -brainR = derive { name="brainR"; version="1.2"; sha256="1515v6kk73p4s3vrnkpkilfxfyqrf7b762sq6j364ygsyfybvh2z"; depends=[rgl misc3d oro_nifti]; }; +brainR = derive { name="brainR"; version="1.2"; sha256="1515v6kk73p4s3vrnkpkilfxfyqrf7b762sq6j364ygsyfybvh2z"; depends=[misc3d oro_nifti rgl]; }; brainwaver = derive { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; }; -branchLars = derive { name="branchLars"; version="1.0"; sha256="1adk9j77ynv7y8q04nvb468ik4nq4ff3j2nbxw596kgg5bg1ymz0"; depends=[lars]; }; +branchLars = derive { name="branchLars"; version="1.0"; sha256="1adk9j77ynv7y8q04nvb468ik4nq4ff3j2nbxw596kgg5bg1ymz0"; depends=[lars Rgraphviz]; }; breakage = derive { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; breakaway = derive { name="breakaway"; version="1.0"; sha256="1agigb3b2ff1p9lx9ndz4hs1sgyv1g2zjb41l5p23370i5gk1nbn"; depends=[]; }; -breakpoint = derive { name="breakpoint"; version="1.1"; sha256="07k5d1jn5ahhml2q9ynpmwjm2ckyrr63qj7svh2ziyb41f5v7mfw"; depends=[ggplot2 MASS msm foreach doParallel]; }; +breakpoint = derive { name="breakpoint"; version="1.1"; sha256="07k5d1jn5ahhml2q9ynpmwjm2ckyrr63qj7svh2ziyb41f5v7mfw"; depends=[doParallel foreach ggplot2 MASS msm]; }; brew = derive { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; -brewdata = derive { name="brewdata"; version="0.4"; sha256="1i8i3yhyph212m6jjsij61hz65a5rplxw8y2xqf6daqiisam5q6i"; depends=[RCurl XML stringdist]; }; +brewdata = derive { name="brewdata"; version="0.4"; sha256="1i8i3yhyph212m6jjsij61hz65a5rplxw8y2xqf6daqiisam5q6i"; depends=[RCurl stringdist XML]; }; brglm = derive { name="brglm"; version="0.5-9"; sha256="14hxjamxyd0npak8wyfmmb17qclj5f86wz2y9qq3gbyi2s1bqw2v"; depends=[profileModel]; }; bride = derive { name="bride"; version="1.3"; sha256="03k9jwklg1l8sqyjfh914570880ii0qb5dd9l0bg0d0qrghbj0rk"; depends=[]; }; -brms = derive { name="brms"; version="0.1.0"; sha256="0cx01d65vwsrxlhvxwwlaviz1lvxhl0hd8qw0bna99w8ypsqfp3i"; depends=[ggplot2 Rcpp coda ggmcmc gridExtra]; }; +brms = derive { name="brms"; version="0.2.0"; sha256="1i515sz3paiwwkmgglqzb2gzb2y6m99kp95xaarpawsja8nxi2j0"; depends=[abind coda ggmcmc ggplot2 gridExtra Rcpp]; }; brnn = derive { name="brnn"; version="0.5"; sha256="0kf2fdgshk8i3jlxjfgpdfq08kzlz3k9s7rdp4bg4lg3khmah9d1"; depends=[Formula]; }; -broman = derive { name="broman"; version="0.55-2"; sha256="04pg362gmxg5lvrv333mjq06lv0q3a1mq6wrbmy87jch6f10lazi"; depends=[assertthat RPushbullet jsonlite ggplot2]; }; -broom = derive { name="broom"; version="0.3.7"; sha256="00z4kwxdqp6g35g4x6js9rc96z8i40hzgvhf5frj9dwfpxclk145"; depends=[plyr dplyr tidyr psych stringr]; }; -bshazard = derive { name="bshazard"; version="1.0"; sha256="151c63pyapddc4z77bgkhmd7rsa1jl47x8s2n2s8yc6alwmj6dvs"; depends=[survival Epi]; }; +broman = derive { name="broman"; version="0.55-2"; sha256="04pg362gmxg5lvrv333mjq06lv0q3a1mq6wrbmy87jch6f10lazi"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; +broom = derive { name="broom"; version="0.3.7"; sha256="00z4kwxdqp6g35g4x6js9rc96z8i40hzgvhf5frj9dwfpxclk145"; depends=[dplyr plyr psych stringr tidyr]; }; +bshazard = derive { name="bshazard"; version="1.0"; sha256="151c63pyapddc4z77bgkhmd7rsa1jl47x8s2n2s8yc6alwmj6dvs"; depends=[Epi survival]; }; bspec = derive { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; bspmma = derive { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; }; -bst = derive { name="bst"; version="0.3-4"; sha256="1s7qv2q9mcgg1c5mhblqg3nk9hary4pq6z0xgi3a6rs1929mgdyf"; depends=[rpart gbm]; }; -bsts = derive { name="bsts"; version="0.6.1"; sha256="0hs2inbwwpafpcr6y51qnmxms121z8cy8mil6acjfhrfc27f1msd"; depends=[BoomSpikeSlab zoo xts Boom Boom BH]; }; -btf = derive { name="btf"; version="1.1"; sha256="0n1h4hmjpvj97mpvannh3s5l08m4zfv0w64hrgdv4s5808miwfzc"; depends=[Matrix coda Rcpp RcppEigen]; }; -bujar = derive { name="bujar"; version="0.1-4"; sha256="0v48mkg78sy91z1z4xvy2r3xmay74615kzqxjqlclkk20999z56m"; depends=[mda ncvreg mboost gbm earth elasticnet rms]; }; +bst = derive { name="bst"; version="0.3-4"; sha256="1s7qv2q9mcgg1c5mhblqg3nk9hary4pq6z0xgi3a6rs1929mgdyf"; depends=[gbm rpart]; }; +bsts = derive { name="bsts"; version="0.6.1"; sha256="0hs2inbwwpafpcr6y51qnmxms121z8cy8mil6acjfhrfc27f1msd"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; +btf = derive { name="btf"; version="1.1"; sha256="0n1h4hmjpvj97mpvannh3s5l08m4zfv0w64hrgdv4s5808miwfzc"; depends=[coda Matrix Rcpp RcppEigen]; }; +bujar = derive { name="bujar"; version="0.1-4"; sha256="0v48mkg78sy91z1z4xvy2r3xmay74615kzqxjqlclkk20999z56m"; depends=[earth elasticnet gbm mboost mda ncvreg rms]; }; bursts = derive { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; -bvarsv = derive { name="bvarsv"; version="1.0"; sha256="0ak4nsrcvhkg0145ax5ib9ljb5yc63zzfxlgvdbrdr4mlri4gsid"; depends=[Rcpp Rcpp RcppArmadillo]; }; +bvarsv = derive { name="bvarsv"; version="1.0"; sha256="0ak4nsrcvhkg0145ax5ib9ljb5yc63zzfxlgvdbrdr4mlri4gsid"; depends=[Rcpp RcppArmadillo]; }; bvenn = derive { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; bvls = derive { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; -bvpSolve = derive { name="bvpSolve"; version="1.2.4"; sha256="1ss25md3q59cm40rxw29x9421xjc7gd964hx9xwvx4h8dis34rgd"; depends=[rootSolve deSolve]; }; -c060 = derive { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet survival mlegp tgp peperr penalizedSVM lattice]; }; +bvpSolve = derive { name="bvpSolve"; version="1.2.4"; sha256="1ss25md3q59cm40rxw29x9421xjc7gd964hx9xwvx4h8dis34rgd"; depends=[deSolve rootSolve]; }; +c060 = derive { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; c3net = derive { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive { name="cAIC4"; version="0.2"; sha256="13sp3wywv82wgi1vsbxwn68v9xigy0fi3mcwyxjmmgmnsxns2fza"; depends=[lme4 Matrix]; }; -cOde = derive { name="cOde"; version="0.1"; sha256="1cjp63lya2r82fgjwz8mnzs50x7hyzg87dkm006m76xs1iyv988i"; depends=[]; }; -cSFM = derive { name="cSFM"; version="1.1"; sha256="1znxsqa8xdifmryg7jiqbpzm837n4n862kg5x1aki52crc4zyk3k"; depends=[sn mgcv mnormt MASS moments]; }; +cOde = derive { name="cOde"; version="0.2"; sha256="0741ghg0cqxvgwgvrvsgi75qlkirnm8cjc6bw6xbmkg97scrs5ck"; depends=[]; }; +cSFM = derive { name="cSFM"; version="1.1"; sha256="1znxsqa8xdifmryg7jiqbpzm837n4n862kg5x1aki52crc4zyk3k"; depends=[MASS mgcv mnormt moments sn]; }; ca = derive { name="ca"; version="0.58"; sha256="10dp261sq56ixrrr8qq4filxpzszcinz5qv50g40dan0k75n7isb"; depends=[]; }; caTools = derive { name="caTools"; version="1.17.1"; sha256="1x4szsn2qmbzpyjfdaiz2q7jwhap2gky9wq0riah74q0pzz76ank"; depends=[bitops]; }; cabootcrs = derive { name="cabootcrs"; version="1.0"; sha256="0a6y04jq837k1pk8b9nhgz7rima7s8jid6vdjyfvrqshgaiabg1q"; depends=[]; }; cacIRT = derive { name="cacIRT"; version="1.3"; sha256="1qd9qw47d9dmxhnva3ik62q5rfcw0pd1ha1y689345nl05wysjkh"; depends=[]; }; cairoDevice = derive { name="cairoDevice"; version="2.22"; sha256="0j1fsfjzaz0mz6v33v8n2dcbskpafm3mhi5v85phpk3x4s2y84al"; depends=[]; }; calibrate = derive { name="calibrate"; version="1.7.2"; sha256="010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"; depends=[MASS]; }; -calibrator = derive { name="calibrator"; version="1.2-6"; sha256="1arprrqmczbhc1gl85fh37cwpcky8vvqdh6zfza3hy21pn21i4kh"; depends=[emulator cubature]; }; -calmate = derive { name="calmate"; version="0.12.0"; sha256="1jd1ag1v10bpgkqpf5134av0yc7xph1679q40y541kyr59df0lxw"; depends=[R_utils aroma_core MASS R_methodsS3 R_oo matrixStats R_filesets]; }; -camel = derive { name="camel"; version="0.2.0"; sha256="0krilird8j69zbll96k46pcys4gfkcnkisww138wslwbicl52334"; depends=[lattice igraph MASS Matrix]; }; -cancerTiming = derive { name="cancerTiming"; version="3.0.0"; sha256="1sc5mz2gnrzvkc9kfnspq9vddk48a0a99yyywkwy1vvj0q2dgmyn"; depends=[LearnBayes gplots]; }; +calibrator = derive { name="calibrator"; version="1.2-6"; sha256="1arprrqmczbhc1gl85fh37cwpcky8vvqdh6zfza3hy21pn21i4kh"; depends=[cubature emulator]; }; +calmate = derive { name="calmate"; version="0.12.0"; sha256="1jd1ag1v10bpgkqpf5134av0yc7xph1679q40y541kyr59df0lxw"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; +camel = derive { name="camel"; version="0.2.0"; sha256="0krilird8j69zbll96k46pcys4gfkcnkisww138wslwbicl52334"; depends=[igraph lattice MASS Matrix]; }; +cancerTiming = derive { name="cancerTiming"; version="3.0.0"; sha256="1sc5mz2gnrzvkc9kfnspq9vddk48a0a99yyywkwy1vvj0q2dgmyn"; depends=[gplots LearnBayes]; }; candisc = derive { name="candisc"; version="0.6-7"; sha256="1g2vypcniy94h462kylmzraa6q3ys9m0r1cn21dm8rzzjxid9g3g"; depends=[car heplots]; }; -cape = derive { name="cape"; version="1.3"; sha256="1qvjbnxydc16mflg1rmgp2kgljcna8vi88w34cs6k12wpgxmvz1f"; depends=[corpcor evd qpcR Matrix igraph fdrtool shape]; }; +cape = derive { name="cape"; version="1.3"; sha256="1qvjbnxydc16mflg1rmgp2kgljcna8vi88w34cs6k12wpgxmvz1f"; depends=[corpcor evd fdrtool igraph Matrix qpcR shape]; }; caper = derive { name="caper"; version="0.5.2"; sha256="1l773sxmh1nyxlrjz8brnwhwraff826scwixrqmgdciqk7046d35"; depends=[ape MASS mvtnorm]; }; -capm = derive { name="capm"; version="0.8.0"; sha256="1vz17x0v5cjs5kdqkbay08f91kclsx4rcli5vgh9yxlk4ih9w4dd"; depends=[deSolve FME survey ggplot2 reshape2 shiny rgdal maptools sp]; }; +capm = derive { name="capm"; version="0.8.0"; sha256="1vz17x0v5cjs5kdqkbay08f91kclsx4rcli5vgh9yxlk4ih9w4dd"; depends=[deSolve FME ggplot2 maptools reshape2 rgdal shiny sp survey]; }; capushe = derive { name="capushe"; version="1.0"; sha256="0dwxaiqnz0qbsk4icjapklaa9bpjfl4gqvk1f92livy97jmf1r44"; depends=[MASS]; }; capwire = derive { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; car = derive { name="car"; version="2.0-25"; sha256="1h7fndsypg9jqfc4xlr8aszjgs477jsvvw4lkpgjxrlb4j779yyj"; depends=[MASS mgcv nnet pbkrtest quantreg]; }; -carcass = derive { name="carcass"; version="1.4"; sha256="16apmiackw194p5n0fivkgd2ymca9bfajasypl82xqyfk6amh088"; depends=[lme4 survival expm arm MASS]; }; -cardidates = derive { name="cardidates"; version="0.4.6"; sha256="02ib56fvn2z63sbinhwnlw123y86h6xazbkzw68sa9klqaxv69yl"; depends=[boot pastecs lattice]; }; +carcass = derive { name="carcass"; version="1.4"; sha256="16apmiackw194p5n0fivkgd2ymca9bfajasypl82xqyfk6amh088"; depends=[arm expm lme4 MASS survival]; }; +cardidates = derive { name="cardidates"; version="0.4.6"; sha256="02ib56fvn2z63sbinhwnlw123y86h6xazbkzw68sa9klqaxv69yl"; depends=[boot lattice pastecs]; }; care = derive { name="care"; version="1.1.8"; sha256="0r1j2q23rz54rcx528n53m3hmhvb8ndqjpmmzm6j1y6lmixpqh41"; depends=[corpcor]; }; -caret = derive { name="caret"; version="6.0-47"; sha256="0mpmch0435gcszj5yq4p7jpq7y9q8jk1bz3i1c9ij7a73kq2368i"; depends=[lattice ggplot2 car reshape2 foreach plyr nlme BradleyTerry2]; }; -caretEnsemble = derive { name="caretEnsemble"; version="1.0.0"; sha256="16qibyx034gi06rs8wnazfdicvrwpdsys3mvgwmb35qgzldqfizy"; depends=[caret caTools pbapply ggplot2 digest plyr lattice gridExtra]; }; +caret = derive { name="caret"; version="6.0-47"; sha256="0mpmch0435gcszj5yq4p7jpq7y9q8jk1bz3i1c9ij7a73kq2368i"; depends=[BradleyTerry2 car foreach ggplot2 lattice nlme plyr reshape2]; }; +caretEnsemble = derive { name="caretEnsemble"; version="1.0.0"; sha256="16qibyx034gi06rs8wnazfdicvrwpdsys3mvgwmb35qgzldqfizy"; depends=[caret caTools digest ggplot2 gridExtra lattice pbapply plyr]; }; caribou = derive { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; caroline = derive { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; caschrono = derive { name="caschrono"; version="1.4"; sha256="1l9hmsacynh73kh14jrp7a42385v78znn9ll1jchzgkyz2x4dibw"; depends=[forecast Hmisc its timeSeries]; }; @@ -2715,42 +2777,42 @@ cat = derive { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yiz catIrt = derive { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; catR = derive { name="catR"; version="3.4"; sha256="0rgzcnqp18wb8m7f3m8mm7pv04a1irlknkrsrr4hhnzs0phf06yz"; depends=[]; }; catdata = derive { name="catdata"; version="1.2.1"; sha256="0fjylb55iw8w9sd3hbg895pzasliy68wcq95mgrh7af116ss637w"; depends=[MASS]; }; -catenary = derive { name="catenary"; version="1.1"; sha256="0khdk61fh8ngr70qf9i2655h5nblj98r8zl724ljv1cjb5x1vphv"; depends=[ggplot2 boot]; }; -cati = derive { name="cati"; version="0.96"; sha256="07vvhar1skcmx0sqkp4bcrrlmb88llqpgg4vmdi4nqhw48kjyjqn"; depends=[nlme ade4 ape e1071 mice rasterVis hypervolume FD geometry vegan]; }; +catenary = derive { name="catenary"; version="1.1"; sha256="0khdk61fh8ngr70qf9i2655h5nblj98r8zl724ljv1cjb5x1vphv"; depends=[boot ggplot2]; }; +cati = derive { name="cati"; version="0.99"; sha256="1xghdqmqfwi0wnzvrd896z4snyjqqs9kw3whmkd3cph8zf0jl931"; depends=[ade4 ape e1071 FD geometry hypervolume mice nlme rasterVis vegan]; }; catnet = derive { name="catnet"; version="1.14.8"; sha256="03y7ddjyra3cjq7savdgickmw82ncx4k01rn752sks6rpl6bjslc"; depends=[]; }; catspec = derive { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; causaleffect = derive { name="causaleffect"; version="1.1.1"; sha256="1rsn3zfi24vv1s03ki0aghw4kjls95dr25473fpbmsrmm8n48cqi"; depends=[ggm igraph XML]; }; causalsens = derive { name="causalsens"; version="0.1"; sha256="1v72zjplsa073f92qdza1zvwa1fwxlpmh8f6w5z8qcyiwqcbmifr"; depends=[]; }; cba = derive { name="cba"; version="0.2-14"; sha256="067rm1rfz0rrq8xkzibd81pwvc9rx7ki46bncim4j5ra6i9pn24n"; depends=[proxy]; }; ccChooser = derive { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; -ccaPP = derive { name="ccaPP"; version="0.3.0"; sha256="1wj5yij02372xarhvxsnh43v0l6xb2p8rflmskw6x86vpcdqd6zw"; depends=[Rcpp pcaPP robustbase RcppArmadillo Rcpp RcppArmadillo]; }; -cccd = derive { name="cccd"; version="1.04"; sha256="0mhqv9hzvw3w6wp23kvw4py54ij6x9r19b87i97wwgqr5rhhh1f3"; depends=[igraph plotrix proxy]; }; -cccp = derive { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp Rcpp RcppArmadillo]; }; -cccrm = derive { name="cccrm"; version="1.1"; sha256="0q7vxzj3lblz5ddgzm8z99k0b0z194963hx96bbkqm4rv705dgb0"; depends=[nlme gdata]; }; +ccaPP = derive { name="ccaPP"; version="0.3.0"; sha256="1wj5yij02372xarhvxsnh43v0l6xb2p8rflmskw6x86vpcdqd6zw"; depends=[pcaPP Rcpp RcppArmadillo robustbase]; }; +cccd = derive { name="cccd"; version="1.5"; sha256="0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i"; depends=[deldir FNN igraph proxy]; }; +cccp = derive { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; }; +cccrm = derive { name="cccrm"; version="1.1"; sha256="0q7vxzj3lblz5ddgzm8z99k0b0z194963hx96bbkqm4rv705dgb0"; depends=[gdata nlme]; }; ccda = derive { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; }; ccgarch = derive { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; }; cchs = derive { name="cchs"; version="0.1.0"; sha256="1x6pzwjdcklkbgr1yalijrcj3g56hj6085fh4pzqbm7xkqcj1mi6"; depends=[survival]; }; cclust = derive { name="cclust"; version="0.6-19"; sha256="11lzzpr65jw7s0419bdy3w7cq97ysvv52ijb1wgqpa48wh1qbqqd"; depends=[]; }; -cda = derive { name="cda"; version="1.5.1"; sha256="09a2jb25219hq6if3bx03lsp94rp2ll9g73dhkdi665y7rlhgqwh"; depends=[dielectric Rcpp statmod randtoolbox reshape2 plyr Rcpp RcppArmadillo]; }; +cda = derive { name="cda"; version="1.5.1"; sha256="09a2jb25219hq6if3bx03lsp94rp2ll9g73dhkdi665y7rlhgqwh"; depends=[dielectric plyr randtoolbox Rcpp RcppArmadillo reshape2 statmod]; }; cdb = derive { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; cdcsis = derive { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; }; -cds = derive { name="cds"; version="1.0.1"; sha256="1vw8ghvwsrpsq89yc4vjyfcw2wsz9dhqv1nlaqmv9b4wqm8gsb5h"; depends=[MASS limSolve clue colorspace copula]; }; +cds = derive { name="cds"; version="1.0.1"; sha256="1vw8ghvwsrpsq89yc4vjyfcw2wsz9dhqv1nlaqmv9b4wqm8gsb5h"; depends=[clue colorspace copula limSolve MASS]; }; cec2005benchmark = derive { name="cec2005benchmark"; version="1.0.4"; sha256="0bwv63l31hiy63372nvnyfkpqp61cqjag0gczd2v2iwsy3hyivpd"; depends=[]; }; cec2013 = derive { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; }; -celestial = derive { name="celestial"; version="1.2"; sha256="1bwxr37vkgxavl230jmvk1yp3acnkcpc8im10fsxh1nfxys254ap"; depends=[]; }; -cellVolumeDist = derive { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[minpack_lm gplots]; }; +celestial = derive { name="celestial"; version="1.3"; sha256="0icsrpw8y7r0ls8ch5b25fl4rnvs6x5y2wscmcmpp4fa4x64qqg6"; depends=[RANN]; }; +cellVolumeDist = derive { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; }; cellranger = derive { name="cellranger"; version="0.1.0"; sha256="1nfvh0bd99q7cili0hj6ifcg8r57fxv5k4634b7vkshy5rbc5fw1"; depends=[]; }; -cem = derive { name="cem"; version="1.1.10"; sha256="0lykr7sksii30nk4z8pvn4bdmvhm5952grrsvb63qblazg3b84qc"; depends=[nlme lattice randomForest combinat]; }; +cem = derive { name="cem"; version="1.1.16"; sha256="1crljw5ry3hynmfg9xfnbm3ypy57m33885xg39m88gzi6ydrnsvk"; depends=[combinat lattice MatchIt nlme randomForest]; }; censNID = derive { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; -censReg = derive { name="censReg"; version="0.5-20"; sha256="15k7iq4275dyah3r47vgxsx6g6mr7ma53lkv6d1n89bczzys72kx"; depends=[maxLik glmmML sandwich miscTools]; }; +censReg = derive { name="censReg"; version="0.5-20"; sha256="15k7iq4275dyah3r47vgxsx6g6mr7ma53lkv6d1n89bczzys72kx"; depends=[glmmML maxLik miscTools sandwich]; }; cents = derive { name="cents"; version="0.1-41"; sha256="03ycbd0c8b7danbblaixg6sm7msr9ixkanqswczqa8n2frhjfgj0"; depends=[]; }; -cepp = derive { name="cepp"; version="1.0"; sha256="0lw3qr0vp0qbg2b62abhi1ady1dwig68m4nzqnjnk3lqxzp0fs8f"; depends=[trust randtoolbox]; }; +cepp = derive { name="cepp"; version="1.0"; sha256="0lw3qr0vp0qbg2b62abhi1ady1dwig68m4nzqnjnk3lqxzp0fs8f"; depends=[randtoolbox trust]; }; cernn = derive { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; cfa = derive { name="cfa"; version="0.9-3"; sha256="0pl1mxv6jxn3mvlh75gr8as0daklyr7gkh37fcgmn2bwi973sspy"; depends=[]; }; -cg = derive { name="cg"; version="1.0-2"; sha256="1rgbk4kvjaw4mbqa19hbnhlinqd4bw4fn2znlxr8wfhzj6648cl3"; depends=[Hmisc VGAM MASS lattice survival multcomp nlme]; }; -cgAUC = derive { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp Rcpp]; }; +cg = derive { name="cg"; version="1.0-2"; sha256="1rgbk4kvjaw4mbqa19hbnhlinqd4bw4fn2znlxr8wfhzj6648cl3"; depends=[Hmisc lattice MASS multcomp nlme survival VGAM]; }; +cgAUC = derive { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; cgam = derive { name="cgam"; version="1.2"; sha256="14vl608bf223jclaxfb6i7irfn9g2dqp76fhw82j4h7w4l47i1c3"; depends=[coneproj]; }; -cgdsr = derive { name="cgdsr"; version="1.1.33"; sha256="0y8cn386jifg2ilml0cp9cafjxaa0xkvjnja1fgarlyf07k3cpcs"; depends=[R_oo R_methodsS3]; }; +cgdsr = derive { name="cgdsr"; version="1.1.33"; sha256="0y8cn386jifg2ilml0cp9cafjxaa0xkvjnja1fgarlyf07k3cpcs"; depends=[R_methodsS3 R_oo]; }; cggd = derive { name="cggd"; version="0.8"; sha256="06z0mrxxc02parn9vkjv89qq4yqmsccsy319fi6c5iarssyvin1r"; depends=[]; }; cgh = derive { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; }; cghFLasso = derive { name="cghFLasso"; version="0.2-1"; sha256="0b1hnjf9g0v47hbz0dy9m6jhcl1ky20yyhhmm8myng2sndcpjsbf"; depends=[]; }; @@ -2758,26 +2820,26 @@ cghseg = derive { name="cghseg"; version="1.0.2"; sha256="1x7j62aq5c1xj8ss3pys51 changepoint = derive { name="changepoint"; version="1.1.5"; sha256="090rak3ydlh92w0mpp2sjjx4m9x33clcs77waj20gzxbq38mqdci"; depends=[zoo]; }; cheb = derive { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; chebpol = derive { name="chebpol"; version="1.3-1367"; sha256="0w1yfnag0sjqjn7g5yn3wd19kkwzcchb491335h70rm360m1kr0y"; depends=[]; }; -checkmate = derive { name="checkmate"; version="1.5.2"; sha256="0sllckm82lxiar3mm3sl4zcf9nhp7x7hfhpz1kiawaxfq7z9436g"; depends=[]; }; +checkmate = derive { name="checkmate"; version="1.5.3"; sha256="1d9szbszql0nz1zxplsr0w9f1c9vi11mjr5xg5960slb5v086x0g"; depends=[]; }; checkpoint = derive { name="checkpoint"; version="0.3.10"; sha256="147phhsv5g8k23fd355jqjqpjjj8n3s0bblm8mv5c3d0322li7ac"; depends=[]; }; cheddar = derive { name="cheddar"; version="0.1-629"; sha256="13fmr37jj7dky5jrpr20z1iai9jbnpmwsh2pbzjwvib7561pyd6x"; depends=[]; }; chemCal = derive { name="chemCal"; version="0.1-34"; sha256="0sn0mhp2d9a9rddfpkiv1pkrmvnv4sy18c1x2ks0lwpaklg78fbs"; depends=[]; }; -chemometrics = derive { name="chemometrics"; version="1.3.9"; sha256="089zlp4ba6yyxjh2p7fcph29lnxyk1gifb44fw7lsslvg19xlgjm"; depends=[rpart class e1071 MASS nnet pcaPP robustbase som lars pls mclust]; }; -chemosensors = derive { name="chemosensors"; version="0.7.8"; sha256="0zphfag0q6zskd301z1dldazzxr2fam6h41cpyivphaxpaljiv0m"; depends=[pls plyr reshape2 ggplot2 LearnBayes quadprog RColorBrewer]; }; +chemometrics = derive { name="chemometrics"; version="1.3.9"; sha256="089zlp4ba6yyxjh2p7fcph29lnxyk1gifb44fw7lsslvg19xlgjm"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; +chemosensors = derive { name="chemosensors"; version="0.7.8"; sha256="0zphfag0q6zskd301z1dldazzxr2fam6h41cpyivphaxpaljiv0m"; depends=[ggplot2 LearnBayes pls plyr quadprog RColorBrewer reshape2]; }; cherry = derive { name="cherry"; version="0.5-10"; sha256="0fs4p5k1lwwlin5fj9z91aw59ybp60phjk293imizg6vpai5h39p"; depends=[bitops lpSolve Matrix]; }; childsds = derive { name="childsds"; version="0.5"; sha256="1fmisp6k375harjxsyzpwnd8zh3kd7vlhin18q1svfwdjyy9k3xh"; depends=[]; }; -chillR = derive { name="chillR"; version="0.55"; sha256="1b8lp4dfr3366ism7q2pddqpps3zmsyv5xg9rpyyh9yyl9ga1xhy"; depends=[pls Kendall fields]; }; +chillR = derive { name="chillR"; version="0.55"; sha256="1b8lp4dfr3366ism7q2pddqpps3zmsyv5xg9rpyyh9yyl9ga1xhy"; depends=[fields Kendall pls]; }; chipPCR = derive { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; chngpt = derive { name="chngpt"; version="2014.12-2"; sha256="1bg2hm5clvq1rj1mnj5fasbwmq0xayj327kwclajami4zcwjwqj5"; depends=[kyotil MASS]; }; choiceDes = derive { name="choiceDes"; version="0.9-1"; sha256="07nnqqczi9p3cffdijzx14sxhqv1imdakj7y94brlr5mbf5i4fl4"; depends=[AlgDesign]; }; choplump = derive { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; -chopthin = derive { name="chopthin"; version="0.1"; sha256="1xnyd5mvgqksk7c0mf4irrnshkjgih2h19b55yi4finxh6wrn8l4"; depends=[Rcpp Rcpp]; }; +chopthin = derive { name="chopthin"; version="0.1"; sha256="1xnyd5mvgqksk7c0mf4irrnshkjgih2h19b55yi4finxh6wrn8l4"; depends=[Rcpp]; }; chords = derive { name="chords"; version="0.90"; sha256="0wz5glm15615xb3cicc0m34zg78qzng3lpmysswbrfhc8x4kkchh"; depends=[MASS]; }; -choroplethr = derive { name="choroplethr"; version="3.1.0"; sha256="0nv47hx8z06xh58a1ff63zncl1776pakxa6dbf1skhc23wfafi86"; depends=[scales Hmisc stringr ggplot2 dplyr R6 acs WDI]; }; +choroplethr = derive { name="choroplethr"; version="3.1.0"; sha256="0nv47hx8z06xh58a1ff63zncl1776pakxa6dbf1skhc23wfafi86"; depends=[acs dplyr ggplot2 Hmisc R6 scales stringr WDI]; }; choroplethrAdmin1 = derive { name="choroplethrAdmin1"; version="1.0.0"; sha256="1pnj5155h809sh9mp703y72348mi7mxnwid07kp1s489512ysfwr"; depends=[ggplot2]; }; choroplethrMaps = derive { name="choroplethrMaps"; version="1.0"; sha256="00dgwikfxm1p1dqz1ybsxj1j8jcmrwa08m2d3zsww2invd55pk7g"; depends=[]; }; -chromer = derive { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[dplyr httr data_table]; }; -chromoR = derive { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[haarfisz gdata]; }; +chromer = derive { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; +chromoR = derive { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; }; chron = derive { name="chron"; version="2.3-45"; sha256="0jkanbisi1bxh35rg0i6sl82f8r9v8va8mf8hknfvwv7p7n3ddpx"; depends=[]; }; cin = derive { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; circlize = derive { name="circlize"; version="0.2.4"; sha256="0zxd8jcim03cg77zxq9dvwlki51s9jhyaycdif7q6qc598lwwjx1"; depends=[GlobalOptions shape]; }; @@ -2785,59 +2847,61 @@ circular = derive { name="circular"; version="0.4-7"; sha256="1kgis2515c931ir76k cit = derive { name="cit"; version="1.4"; sha256="0axmi41bydkj512jscil9mqz9g6f11khl8hi6fci96wnm9x8gw7s"; depends=[]; }; citbcmst = derive { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; -cjoint = derive { name="cjoint"; version="1.0.3"; sha256="0f9yh4rbgqlx12vx336isfxc3lnrl5sgbapld0qfkv93p26in9h6"; depends=[sandwich lmtest ggplot2]; }; -clValid = derive { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[cluster class]; }; -cladoRcpp = derive { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp Rcpp RcppArmadillo]; }; +cjoint = derive { name="cjoint"; version="1.0.3"; sha256="0f9yh4rbgqlx12vx336isfxc3lnrl5sgbapld0qfkv93p26in9h6"; depends=[ggplot2 lmtest sandwich]; }; +clValid = derive { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; }; +cladoRcpp = derive { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp RcppArmadillo]; }; class = derive { name="class"; version="7.3-12"; sha256="14baglhxk8xv3857s9b0immizh7sakk3spa5s4v28ysh7i94wx6i"; depends=[MASS]; }; -classGraph = derive { name="classGraph"; version="0.7-4"; sha256="08cid5bdbciyijlzkx3684gx0cyzcj8myawf4dhcrz00jqrg8v60"; depends=[]; }; -classInt = derive { name="classInt"; version="0.1-22"; sha256="0r9940bv6n43i6vlcgc19bvmcv3zlw0bi9zfs3scvah68rdb7v7l"; depends=[e1071 class]; }; +classGraph = derive { name="classGraph"; version="0.7-4"; sha256="08cid5bdbciyijlzkx3684gx0cyzcj8myawf4dhcrz00jqrg8v60"; depends=[graph Rgraphviz]; }; +classInt = derive { name="classInt"; version="0.1-22"; sha256="0r9940bv6n43i6vlcgc19bvmcv3zlw0bi9zfs3scvah68rdb7v7l"; depends=[class e1071]; }; classifly = derive { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; }; -classify = derive { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[Rcpp plyr ggplot2 lattice R2jags reshape2 Rcpp]; }; -classyfire = derive { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[snowfall e1071 boot neldermead ggplot2 optimbase]; }; -clere = derive { name="clere"; version="1.1"; sha256="1jna5dqy47mldd557qxl7vr59v5lalhligvm3c4k6b2dfararhfr"; depends=[Rcpp Rcpp RcppEigen]; }; -clhs = derive { name="clhs"; version="0.5-4"; sha256="0535mpl1dbm9ij1dvj8dsmv4fickdg47by1mvf71lgfk5mjxy5nc"; depends=[ggplot2 sp raster reshape2 plyr scales]; }; -clickstream = derive { name="clickstream"; version="1.1.3"; sha256="0vhwhklyxpirza6j7cq8rcv7mli2w1pkvld70ih8i1xb1dx3y19x"; depends=[igraph plyr reshape2 Rsolnp]; }; -clifro = derive { name="clifro"; version="2.4-0"; sha256="1bjsfk4m7hgq8k1mw07zx34ibgmpxjw8sig9jjzsr5mp3v13kwp8"; depends=[lubridate XML selectr RCurl ggplot2 scales RColorBrewer reshape2]; }; -climdex_pcic = derive { name="climdex.pcic"; version="1.1-5.1"; sha256="0sq5l5dmnwbq9y6zfrq7zp81c8bmxwkvl7y9iq6wi3qcr78ga6zy"; depends=[PCICt caTools Rcpp]; }; +classify = derive { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[ggplot2 lattice plyr R2jags Rcpp reshape2]; }; +classyfire = derive { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; }; +clere = derive { name="clere"; version="1.1"; sha256="1jna5dqy47mldd557qxl7vr59v5lalhligvm3c4k6b2dfararhfr"; depends=[Rcpp RcppEigen]; }; +clhs = derive { name="clhs"; version="0.5-4"; sha256="0535mpl1dbm9ij1dvj8dsmv4fickdg47by1mvf71lgfk5mjxy5nc"; depends=[ggplot2 plyr raster reshape2 scales sp]; }; +clickstream = derive { name="clickstream"; version="1.1.4"; sha256="0z73phz31j7n49xmwdgv293qbg6ldfgibpd5713qyk7qkhk8hvl7"; depends=[arules data_table igraph plyr Rsolnp]; }; +clifro = derive { name="clifro"; version="2.4-0"; sha256="1bjsfk4m7hgq8k1mw07zx34ibgmpxjw8sig9jjzsr5mp3v13kwp8"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; +climdex_pcic = derive { name="climdex.pcic"; version="1.1-5.1"; sha256="0sq5l5dmnwbq9y6zfrq7zp81c8bmxwkvl7y9iq6wi3qcr78ga6zy"; depends=[caTools PCICt Rcpp]; }; clime = derive { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; -climwin = derive { name="climwin"; version="0.0.1"; sha256="1ajkqk6lj2d8gx7arkwrznrkrjvdc5g9789vwaawwczbdavyi8kd"; depends=[ggplot2 gridExtra evd lme4 lubridate MuMIn reshape]; }; +climwin = derive { name="climwin"; version="0.0.1"; sha256="1ajkqk6lj2d8gx7arkwrznrkrjvdc5g9789vwaawwczbdavyi8kd"; depends=[evd ggplot2 gridExtra lme4 lubridate MuMIn reshape]; }; clinUtiDNA = derive { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; -clinfun = derive { name="clinfun"; version="1.0.9"; sha256="1igj48kp8898inxp6ynz0sgrc54s6k8whzgf5d349z4dn2jvizsb"; depends=[mvtnorm]; }; +clinfun = derive { name="clinfun"; version="1.0.10"; sha256="1q69qn7ib0mzpx5cv69fcgflp9rfmys5j33lqdj4b3g1z036bqrr"; depends=[mvtnorm]; }; clinsig = derive { name="clinsig"; version="1.0-5"; sha256="1jb2qk6hfvms85whymrfpgvjp8pv33fbllpl8jg80yg1ppmg2jcg"; depends=[]; }; -clogitL1 = derive { name="clogitL1"; version="1.4"; sha256="0m9yrg9mzzfv5qkdf6w55xyrjdghyrf27kk7b4x2gyvwvi5b7dkm"; depends=[Rcpp Rcpp]; }; +clisymbols = derive { name="clisymbols"; version="1.0.0"; sha256="1g68kh1js6nssyzw4lpxp4d2h4rhlayhahaykxw4a4bd67fkw20p"; depends=[]; }; +clogitL1 = derive { name="clogitL1"; version="1.4"; sha256="0m9yrg9mzzfv5qkdf6w55xyrjdghyrf27kk7b4x2gyvwvi5b7dkm"; depends=[Rcpp]; }; cloudUtil = derive { name="cloudUtil"; version="0.1.10"; sha256="1j86vpd4ngrdpfjk44wb1mp0l88dxia64pjd2idfcd276giplh6s"; depends=[]; }; clpAPI = derive { name="clpAPI"; version="1.2.6"; sha256="1kgzmzf87b0j43ch21anmm2d73bj2d16slmyavpbkdwg72dg1sjb"; depends=[]; }; -clue = derive { name="clue"; version="0.3-49"; sha256="1gz9imirwlvmvzn9j0rmdrrax2girf78xfrxw6mrhal66g48bsrj"; depends=[cluster]; }; +clue = derive { name="clue"; version="0.3-50"; sha256="0r3lb625a6vhxr7im2slz279zav9i74s0b9srkarqmz1bhaf6ly2"; depends=[cluster]; }; clues = derive { name="clues"; version="0.5.6"; sha256="1g0pjj4as5wfc7qr3nwkzgxxxp3mrdq7djn8p8qjba6kcdjxak1i"; depends=[]; }; -clustMD = derive { name="clustMD"; version="1.0"; sha256="1i3c790k300a7y5xhqanp8f1bid2q3a0ajwgf5qsr6dv3ld4h7vj"; depends=[tmvtnorm mvtnorm truncnorm MASS mclust msm]; }; +clustMD = derive { name="clustMD"; version="1.1"; sha256="192li0nx2hwhh5y21xs70vrnzw3wxbzr95f06makaxcrwf4xlp16"; depends=[MASS mclust msm mvtnorm tmvtnorm truncnorm]; }; cluster = derive { name="cluster"; version="2.0.1"; sha256="09l2vydyabk7x19bblxbjm68vnmifz46m5k3csb1snpbhq6qx52c"; depends=[]; }; cluster_datasets = derive { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; -clusterCrit = derive { name="clusterCrit"; version="1.2.4"; sha256="150iq5gp5czb8m7niyi294jjy3dbfpwccgak7scahd5kz2vs07c7"; depends=[]; }; +clusterCrit = derive { name="clusterCrit"; version="1.2.5"; sha256="1xwbvvzrh2dz47y4snmhb96mriblk3czy7dp5bmyvckh5papr2xv"; depends=[]; }; clusterGeneration = derive { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; }; clusterGenomics = derive { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; clusterPower = derive { name="clusterPower"; version="0.5"; sha256="1g2qpvizyk4q3qlgvar436nrfqxwp5y8yi2y6rch9ak5mbg3yzqb"; depends=[lme4]; }; clusterRepro = derive { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; }; -clusterSEs = derive { name="clusterSEs"; version="1.2"; sha256="0ykfwvibps20w62xrdj4cr6w63gig3dyjmdq8m937g8qsmhd74lz"; depends=[sandwich lmtest mlogit]; }; -clusterSim = derive { name="clusterSim"; version="0.44-2"; sha256="1xf3byri6mwlf89n896bxffmf3c6yqqh992npg9sqznx955hcggv"; depends=[cluster MASS ade4 e1071 rgl R2HTML]; }; -clusterfly = derive { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[rggobi e1071 reshape2 plyr RGtk2]; }; +clusterSEs = derive { name="clusterSEs"; version="1.2"; sha256="0ykfwvibps20w62xrdj4cr6w63gig3dyjmdq8m937g8qsmhd74lz"; depends=[lmtest mlogit sandwich]; }; +clusterSim = derive { name="clusterSim"; version="0.44-2"; sha256="1xf3byri6mwlf89n896bxffmf3c6yqqh992npg9sqznx955hcggv"; depends=[ade4 cluster e1071 MASS R2HTML rgl]; }; +clusterfly = derive { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clustergas = derive { name="clustergas"; version="1.0"; sha256="1vf4czpwk71yxd26vm5sal0ml20ssjrq4bmk31yzxydpxn495fg8"; depends=[cluster]; }; clustering_sc_dp = derive { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; -clusteval = derive { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp Rcpp]; }; +clustertend = derive { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; +clusteval = derive { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; clustrd = derive { name="clustrd"; version="0.1.2"; sha256="022lzp1wvbaa20d8hribgq9miy6i7jxm5m1p3p52h9b7bzga3q6g"; depends=[corpcor e1071 ggplot2 irlba]; }; clustsig = derive { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; -clustvarsel = derive { name="clustvarsel"; version="2.1"; sha256="0sj9065s604sjzmlziak9xxl0xhplmp1g3d5dl9smwf2x8bb80mw"; depends=[mclust BMA foreach iterators]; }; -clv = derive { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahwhcyn5pvsqzdlqj700y1k7wl7mc"; depends=[cluster class]; }; +clustvarsel = derive { name="clustvarsel"; version="2.1"; sha256="0sj9065s604sjzmlziak9xxl0xhplmp1g3d5dl9smwf2x8bb80mw"; depends=[BMA foreach iterators mclust]; }; +clv = derive { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahwhcyn5pvsqzdlqj700y1k7wl7mc"; depends=[class cluster]; }; cmaes = derive { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; cmm = derive { name="cmm"; version="0.8"; sha256="1661v2lzxgf4s37wdsrnbsvqwppcr7mbp70i1xsysfzki1z6xr19"; depends=[]; }; cmprsk = derive { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; }; -cmprskQR = derive { name="cmprskQR"; version="0.9.0"; sha256="1vnrfhlmmyamkpd8lsfznfpcq0mspkiwn3j23yj4sarfx5n32s9a"; depends=[survival quantreg]; }; +cmprskQR = derive { name="cmprskQR"; version="0.9.0"; sha256="1vnrfhlmmyamkpd8lsfznfpcq0mspkiwn3j23yj4sarfx5n32s9a"; depends=[quantreg survival]; }; cmrutils = derive { name="cmrutils"; version="1.2-2"; sha256="0gc4sx8g9364sybmrqdjdvddqjd9ps6v205kaw0nqdx30xn96hmm"; depends=[chron]; }; -cmvnorm = derive { name="cmvnorm"; version="1.0-1"; sha256="00cm7zfxbc5md3p6sakan64a6rzz7nbq0bqq9ys2iyxpilxalj3m"; depends=[emulator elliptic]; }; +cmvnorm = derive { name="cmvnorm"; version="1.0-1"; sha256="00cm7zfxbc5md3p6sakan64a6rzz7nbq0bqq9ys2iyxpilxalj3m"; depends=[elliptic emulator]; }; cna = derive { name="cna"; version="1.0-3"; sha256="1iy0ispazhib30kh5wp3jziiyf0992nrdklrq80n0w3zhjyi21rh"; depends=[]; }; cncaGUI = derive { name="cncaGUI"; version="0.0-2"; sha256="0iwsaqqnh142syag91rzwwsc9n2qiw4xh5x1gjsgc74ywdm4g5fz"; depends=[rgl tcltk2 tkrplot]; }; coalescentMCMC = derive { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coarseDataTools = derive { name="coarseDataTools"; version="0.6-2"; sha256="1nnh61kfw294cxawz9i8yf37ddzsn5s532vvkaz0ychk0390wmi5"; depends=[MCMCpack]; }; -cobs = derive { name="cobs"; version="1.3-0"; sha256="1aly7ir7vzir9wnbhyfbrkl7dbq68f79jwxhqrfpf0v2m5kxhz88"; depends=[SparseM quantreg]; }; +cobs = derive { name="cobs"; version="1.3-0"; sha256="1aly7ir7vzir9wnbhyfbrkl7dbq68f79jwxhqrfpf0v2m5kxhz88"; depends=[quantreg SparseM]; }; cobs99 = derive { name="cobs99"; version="0.9-12"; sha256="0zd0nyw8ma7k90i1k3ryn6qcb6yivrrajc6nmdh4f95ihvhc9ksm"; depends=[]; }; cocor = derive { name="cocor"; version="1.1-1"; sha256="1w6v9499jj727iznap66hlv9lr4r3s9pr5jnsin9zi8hjb2vhj4h"; depends=[]; }; cocorresp = derive { name="cocorresp"; version="0.2-3"; sha256="0r1kmcwnf476xbw7r40r3vbn6l1zgmaiq6cpgrvnyss7i5313q8s"; depends=[vegan]; }; @@ -2846,36 +2910,37 @@ coda = derive { name="coda"; version="0.17-1"; sha256="1qjsqf4xi6xii60dscn577gmh codadiags = derive { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; codep = derive { name="codep"; version="0.4-1"; sha256="1jkd6k80d6vyriwmq1car5zjms304zrdrfbjib664zxzx1wadf8z"; depends=[]; }; codetools = derive { name="codetools"; version="0.2-11"; sha256="1mal1xa7san28l6rssvanndsgm90qhvbskz840ybfwwix8bqnbmh"; depends=[]; }; -coefficientalpha = derive { name="coefficientalpha"; version="0.3.3"; sha256="1r38jlcl3z16xc410bcgcw1ck6nnby1mqwx5sk6g0lm3jbjcka57"; depends=[rsem lavaan]; }; -coefplot = derive { name="coefplot"; version="1.2.0"; sha256="1v6c3fk2wrjgs3b31vajmig6dvmp5acfm72wh0iffpg0qgvf5hh7"; depends=[ggplot2 plyr reshape2 useful scales proto]; }; -coenocliner = derive { name="coenocliner"; version="0.1-0"; sha256="0hys1a4ai09pax5ydcaq39ll3rdjzyhgvz72z0iv9fwv4fbmwbr9"; depends=[]; }; +coefficientalpha = derive { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[lavaan rsem]; }; +coefplot = derive { name="coefplot"; version="1.2.0"; sha256="1v6c3fk2wrjgs3b31vajmig6dvmp5acfm72wh0iffpg0qgvf5hh7"; depends=[ggplot2 plyr proto reshape2 scales useful]; }; +coenocliner = derive { name="coenocliner"; version="0.2-0"; sha256="1ndz7nhkzb8y0akyf1ja39m60c1afk4sb8qk7m4xd3srd71wb35z"; depends=[]; }; coexist = derive { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; }; -coin = derive { name="coin"; version="1.0-24"; sha256="1h1d6pi957qkmlk2j8f280sc6jkg328wnyxjk43yxj2zwmdnmgpd"; depends=[survival modeltools mvtnorm]; }; +coin = derive { name="coin"; version="1.0-24"; sha256="1h1d6pi957qkmlk2j8f280sc6jkg328wnyxjk43yxj2zwmdnmgpd"; depends=[modeltools mvtnorm survival]; }; cold = derive { name="cold"; version="1.0-4"; sha256="00rl2h4pirzvgwi28pr94kkn233wvm2z8yyfsz6andbkjsihp6jw"; depends=[]; }; -coloc = derive { name="coloc"; version="2.3-1"; sha256="1j3m9afpkm0bzib38yqvk85b6s6l56s6j2ni96gii4a06r87ig60"; depends=[colorspace MASS BMA]; }; +coloc = derive { name="coloc"; version="2.3-1"; sha256="1j3m9afpkm0bzib38yqvk85b6s6l56s6j2ni96gii4a06r87ig60"; depends=[BMA colorspace MASS]; }; colorRamps = derive { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; coloredICA = derive { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; }; colorfulVennPlot = derive { name="colorfulVennPlot"; version="2.4"; sha256="01b3c060fbnap78h9kh21v3zav547ak2crdkvraynpd2096yk51w"; depends=[]; }; colorspace = derive { name="colorspace"; version="1.2-6"; sha256="0y8n4ljwhbdvkysdwgqzcnpv107pb3px1jip3k6svv86p72nacds"; depends=[]; }; colortools = derive { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; -colourlovers = derive { name="colourlovers"; version="0.1.4"; sha256="1c5g9z7cknn4z1jqb0l1w8v5zj0qbk4msaf1pqfcx9a70pw8s0m5"; depends=[XML RJSONIO png]; }; -comato = derive { name="comato"; version="1.0"; sha256="03jnvv0sczy13r81aljhj9kv09sl5hrs0n5bn3pdi7ba64zgbjiw"; depends=[igraph Matrix lattice gdata XML cluster clusterSim]; }; +colourlovers = derive { name="colourlovers"; version="0.1.4"; sha256="1c5g9z7cknn4z1jqb0l1w8v5zj0qbk4msaf1pqfcx9a70pw8s0m5"; depends=[png RJSONIO XML]; }; +comato = derive { name="comato"; version="1.0"; sha256="03jnvv0sczy13r81aljhj9kv09sl5hrs0n5bn3pdi7ba64zgbjiw"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; }; combinat = derive { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; }; comclim = derive { name="comclim"; version="0.9.4"; sha256="0m6ynccscsrrq70p0drwrwxp4skc630kv1l5smh48pi8kagahj1g"; depends=[]; }; commandr = derive { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive { name="commentr"; version="0.1"; sha256="0kyi7xd2f2b1avk78bmkbagyjqwwx21hca670n38k1a28kvnjpix"; depends=[stringr]; }; +commonmark = derive { name="commonmark"; version="0.4"; sha256="0canhzzc91fpcg53zms12k382zj4db652vh5cn74xrp73z8yvabk"; depends=[]; }; compHclust = derive { name="compHclust"; version="1.0-2"; sha256="1h39krvz516xwsvn5987i1zbzan8vx2411qz6dad112hpss0vyk9"; depends=[]; }; compactr = derive { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive { name="compare"; version="0.2-5"; sha256="073apjmw5hwslhnjwhff0m8lwszv29n6vbqy0wxl39pyzg7q2x41"; depends=[]; }; compareC = derive { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; -compareGroups = derive { name="compareGroups"; version="3.0"; sha256="0dgh72virrx9bwls5z9wbdh8rk0q1i08pmyh7wma532mx0yv8mzq"; depends=[Hmisc gdata xtable SNPassoc survival epitools HardyWeinberg]; }; +compareGroups = derive { name="compareGroups"; version="3.0.1"; sha256="185lz69al72p4s354vn6gvha3zbhyvf2fsfym0knyspgl08q3m2g"; depends=[epitools gdata HardyWeinberg Hmisc SNPassoc survival xtable]; }; compareODM = derive { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparison = derive { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; -compeir = derive { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[lattice etm]; }; -compendiumdb = derive { name="compendiumdb"; version="1.0.0"; sha256="14dpfyknb4rnig3k2k7684ly45mwx8b22q8bffbiqx1ah827nrna"; depends=[RMySQL]; }; -complmrob = derive { name="complmrob"; version="0.5.8"; sha256="0hhn6w8kvwzs2qflqf8qiqac0n93pi4rkbh8idbcfn8shkhnjzjs"; depends=[robustbase ggplot2 boot scales]; }; +compeir = derive { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; }; +compendiumdb = derive { name="compendiumdb"; version="1.0.1"; sha256="1dbmsjr4sdg8q09zgg957dcvsqxpjxpnqs7gyc4k523k6ramzabr"; depends=[Biobase GEOquery RMySQL]; }; +complmrob = derive { name="complmrob"; version="0.5.8"; sha256="0hhn6w8kvwzs2qflqf8qiqac0n93pi4rkbh8idbcfn8shkhnjzjs"; depends=[boot ggplot2 robustbase scales]; }; compoisson = derive { name="compoisson"; version="0.3"; sha256="0v5dl7xydqi4p97nipn4hyhpq2gghmx81ygvl0vc8b65jhq89y0p"; depends=[MASS]; }; -compositions = derive { name="compositions"; version="1.40-1"; sha256="1hn139g86bc1q3dj6kj9f21042v4x0xgrp4ni1zvx1zx8xmy3h8b"; depends=[tensorA robustbase energy bayesm]; }; +compositions = derive { name="compositions"; version="1.40-1"; sha256="1hn139g86bc1q3dj6kj9f21042v4x0xgrp4ni1zvx1zx8xmy3h8b"; depends=[bayesm energy robustbase tensorA]; }; compound_Cox = derive { name="compound.Cox"; version="1.4"; sha256="08sdkq040zk9mb1lcy4nm32gwab26vaig8brp2n3aizagx9fv3r9"; depends=[numDeriv survival]; }; compute_es = derive { name="compute.es"; version="0.2-4"; sha256="1b5i8z66zbag0vdv98mmpwmizpm68vc3ajh0n3q94zdcmhcbx12d"; depends=[]; }; concor = derive { name="concor"; version="1.0-0.1"; sha256="0hjyvi6p16cyrmq0bq7fph1r5f3adp7zpf123wkm5bkjnc5122k0"; depends=[]; }; @@ -2884,29 +2949,30 @@ cond = derive { name="cond"; version="1.2-3"; sha256="0y7m7valk7zn40y62348czmdvf condGEE = derive { name="condGEE"; version="0.1-4"; sha256="0mqj2pc91n8h3arpd4b9f7ndbcnai21c67is22qg22wj7vhhs87h"; depends=[numDeriv rootSolve]; }; condMVNorm = derive { name="condMVNorm"; version="2015.2-1"; sha256="04563jljnjhbiaiq33gn5dxjfvv05xp3lhl3w942v0smy0cdhrh4"; depends=[mvtnorm]; }; condmixt = derive { name="condmixt"; version="1.0"; sha256="05q1fj7akf6lsq9rbcqqkzlx82jvk6mlvmwx6jzk8j228fwqmg90"; depends=[evd]; }; -coneproj = derive { name="coneproj"; version="1.5"; sha256="1xk6v5hp5v5hcxnl8fhb9ccv343yjpswrgm65p4046sw0b764pny"; depends=[Rcpp RcppArmadillo Rcpp]; }; +coneproj = derive { name="coneproj"; version="1.6"; sha256="1bx0j9r83c944aklyq4lxdhmskyiwh4f6i2fim5fi6hpf6n9ajds"; depends=[Rcpp RcppArmadillo]; }; conf_design = derive { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; -confidence = derive { name="confidence"; version="1.1-0"; sha256="11y2mjh9ykmsgf6km6f2w5rql1vqwick4jzmxg5gkfkiisvsq1cp"; depends=[knitr markdown plyr xtable ggplot2]; }; -conformal = derive { name="conformal"; version="0.1"; sha256="0syb1p35r6fir7qimp2k51hpvl3xw45ma2hi7qz2xzw8cwhlii3a"; depends=[caret ggplot2 randomForest e1071]; }; +confidence = derive { name="confidence"; version="1.1-0"; sha256="11y2mjh9ykmsgf6km6f2w5rql1vqwick4jzmxg5gkfkiisvsq1cp"; depends=[ggplot2 knitr markdown plyr xtable]; }; +conformal = derive { name="conformal"; version="0.1"; sha256="0syb1p35r6fir7qimp2k51hpvl3xw45ma2hi7qz2xzw8cwhlii3a"; depends=[caret e1071 ggplot2 randomForest]; }; confreq = derive { name="confreq"; version="1.3-1"; sha256="1d4ianimksnfwkld7cg9mkhbpwiaqy5bcilwfy45dwby5bai6cjx"; depends=[gmp]; }; conics = derive { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive { name="conjoint"; version="1.39"; sha256="0f8fwf419js9c292i3ac89rlrwxs2idhwxml1qd8xd2ggwfh6w5m"; depends=[AlgDesign clusterSim]; }; -constrainedKriging = derive { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[sp spatialCovariance rgeos RandomFields]; }; +constrainedKriging = derive { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; }; contfrac = derive { name="contfrac"; version="1.1-9"; sha256="16yl96bmr16a18qfz6y5zf7p02ky1jy2iimcb1wp50g7imlcq840"; depends=[]; }; -conting = derive { name="conting"; version="1.5"; sha256="02vkpzdcwsny40jdcxgjfrx89lw1gq864s3fgswa9bfxfps9p58h"; depends=[mvtnorm BMS gtools tseries coda]; }; +conting = derive { name="conting"; version="1.5"; sha256="02vkpzdcwsny40jdcxgjfrx89lw1gq864s3fgswa9bfxfps9p58h"; depends=[BMS coda gtools mvtnorm tseries]; }; contrast = derive { name="contrast"; version="0.19"; sha256="1kc3scz3msa52lplc79mmn4z99kq1p2vlb18wqxa9q2ma133x6pl"; depends=[rms]; }; -convevol = derive { name="convevol"; version="1.0"; sha256="05nhpndixvrmiq5paswj7qwsq3k3al34q3j751bic4kb8zhby3fk"; depends=[ape geiger MASS phytools cluster]; }; -cooccur = derive { name="cooccur"; version="1.2"; sha256="0v26aa6j77dmm7pdij4qaz03mxn69aa71rw6n5yl3b9qb0w4k81z"; depends=[reshape2 gmp ggplot2]; }; -cooptrees = derive { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[igraph optrees gtools]; }; +convevol = derive { name="convevol"; version="1.0"; sha256="05nhpndixvrmiq5paswj7qwsq3k3al34q3j751bic4kb8zhby3fk"; depends=[ape cluster geiger MASS phytools]; }; +cooccur = derive { name="cooccur"; version="1.2"; sha256="0v26aa6j77dmm7pdij4qaz03mxn69aa71rw6n5yl3b9qb0w4k81z"; depends=[ggplot2 gmp reshape2]; }; +cooptrees = derive { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; copBasic = derive { name="copBasic"; version="1.7.1"; sha256="0qhrazzsrc429z9fsbqklvwdfgn65adck51vp74jijjd0p6pki4s"; depends=[lmomco]; }; -copCAR = derive { name="copCAR"; version="1.0-1"; sha256="173jv69n4g68yfrz03sg23qzlyvvlw988axgj5knq3l2cq6pjpb2"; depends=[numDeriv Rcpp spam Rcpp RcppArmadillo]; }; -cope = derive { name="cope"; version="0.1"; sha256="1g00dzy99m4212wrkhmqf8ibmilhp75hd2yv7yfzi28nr5jgir3m"; depends=[maps fields MASS mvtnorm]; }; -copula = derive { name="copula"; version="0.999-13"; sha256="0yjy03wn6lsiacfh7qblspklxc9kfwd3g7bz2fx2ldkd90rwhmqp"; depends=[Matrix lattice gsl ADGofTest stabledist mvtnorm pspline]; }; -copulaedas = derive { name="copulaedas"; version="1.4.1"; sha256="1xs02s91la4i1x1zs8k5gfvd9jhs2zqhv58431p1j3spfapzf2rc"; depends=[copula vines mvtnorm truncnorm]; }; -corHMM = derive { name="corHMM"; version="1.16"; sha256="048bvnw2ib9x7yijlgp4d1lfm9055y79fc613y7p6240vw1ywkrh"; depends=[ape nloptr GenSA expm numDeriv corpcor phangorn]; }; +copCAR = derive { name="copCAR"; version="1.0-1"; sha256="173jv69n4g68yfrz03sg23qzlyvvlw988axgj5knq3l2cq6pjpb2"; depends=[numDeriv Rcpp RcppArmadillo spam]; }; +cope = derive { name="cope"; version="0.1"; sha256="1g00dzy99m4212wrkhmqf8ibmilhp75hd2yv7yfzi28nr5jgir3m"; depends=[fields maps MASS mvtnorm]; }; +copula = derive { name="copula"; version="0.999-13"; sha256="0yjy03wn6lsiacfh7qblspklxc9kfwd3g7bz2fx2ldkd90rwhmqp"; depends=[ADGofTest gsl lattice Matrix mvtnorm pspline stabledist]; }; +copulaedas = derive { name="copulaedas"; version="1.4.1"; sha256="1xs02s91la4i1x1zs8k5gfvd9jhs2zqhv58431p1j3spfapzf2rc"; depends=[copula mvtnorm truncnorm vines]; }; +corHMM = derive { name="corHMM"; version="1.16"; sha256="048bvnw2ib9x7yijlgp4d1lfm9055y79fc613y7p6240vw1ywkrh"; depends=[ape corpcor expm GenSA nloptr numDeriv phangorn]; }; corTools = derive { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; }; corclass = derive { name="corclass"; version="0.1"; sha256="02mxypdrjwf8psk0j9ggbw14889a87c6lw11qki3s3biq52qsx3y"; depends=[igraph]; }; corcounts = derive { name="corcounts"; version="1.4"; sha256="0irlx62ql5rp5s7nnjdy6jh723wl4039wn10zxri8ihxwqsyyz3f"; depends=[]; }; +coreNLP = derive { name="coreNLP"; version="0.4-1"; sha256="0a6pc588ddi9qyi5gsnzzvm4k0p5sp5bnjrlsskaymzdq4rp6miz"; depends=[plotrix rJava XML]; }; coreTDT = derive { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; }; corpcor = derive { name="corpcor"; version="1.6.7"; sha256="1vfzi17vkvzbqgzhmpdhybb6lli0z9vm9p31cwb8bn8ddlkn5ll4"; depends=[]; }; corpora = derive { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; }; @@ -2917,54 +2983,58 @@ corrsieve = derive { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbi cosinor = derive { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; cosmoFns = derive { name="cosmoFns"; version="1.0-1"; sha256="0a6xhbgxxnymlvicg99yhgny2lscxcbmvqmy17kxmahdi797dsg6"; depends=[]; }; cosmosR = derive { name="cosmosR"; version="1.0"; sha256="0w4qywnkgcybgyyhnvvg33amqi2vnkry6iajakyqr1x2hzfpf9sv"; depends=[xlsx]; }; -cosso = derive { name="cosso"; version="2.1-1"; sha256="1wyq27qak0kz4bbzynm24r5ksvb6ddd43h2ykh6m935xck16blyb"; depends=[quadprog Rglpk glmnet]; }; +cosso = derive { name="cosso"; version="2.1-1"; sha256="1wyq27qak0kz4bbzynm24r5ksvb6ddd43h2ykh6m935xck16blyb"; depends=[glmnet quadprog Rglpk]; }; costat = derive { name="costat"; version="2.3"; sha256="1kqyl89lx1amap9zgrfy1bqnl93kahrksj6yms44yrxr1as2g4nk"; depends=[wavethresh]; }; cotrend = derive { name="cotrend"; version="1.0"; sha256="0h0y502wqq83wlf9ab1b9rxg1wycvi3sp4lbqfpvy46vgljrjw87"; depends=[xts]; }; -couchDB = derive { name="couchDB"; version="1.3.0"; sha256="153zxi2liv932r7mphhzgxw4wyizh5iyk62ad6x64av31kd2qzsn"; depends=[RCurl bitops httr rjson]; }; +couchDB = derive { name="couchDB"; version="1.3.0"; sha256="153zxi2liv932r7mphhzgxw4wyizh5iyk62ad6x64av31kd2qzsn"; depends=[bitops httr RCurl rjson]; }; countrycode = derive { name="countrycode"; version="0.18"; sha256="1by3xws2c43ryz4fnlq85yvgnwnvzmvjbd18cafirlwpl6liy2ic"; depends=[]; }; covLCA = derive { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; }; covRobust = derive { name="covRobust"; version="1.1-0"; sha256="1nvy5cqs4g565qj2hhgk5spr58ps2bhas3i752rf7wvrskb89fk7"; depends=[]; }; -covTest = derive { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[lars glmnet glmpath MASS]; }; +covTest = derive { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[glmnet glmpath lars MASS]; }; +covr = derive { name="covr"; version="1.0.0"; sha256="1svq2dcqnd5iwq75nk38lxa3dshiwil2ksd3666713agbqzikgcz"; depends=[crayon devtools htmltools httr jsonlite rex]; }; covreg = derive { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; -coxinterval = derive { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[survival timereg Matrix]; }; -coxme = derive { name="coxme"; version="2.2-4"; sha256="186867w9lcx6il2nfa79g4fbljhak2imjn7hcwczmwz7k7sfa4nk"; depends=[survival bdsmatrix nlme Matrix bdsmatrix]; }; +cowplot = derive { name="cowplot"; version="0.4.0"; sha256="06zpzqm19lmvlwl6pkhlb4iw8y9mq69xw002yggfnfm5lb3plsgs"; depends=[ggplot2 gtable plyr]; }; +coxinterval = derive { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; }; +coxme = derive { name="coxme"; version="2.2-5"; sha256="0lpdwpvsgjgmbf55qqhflw4q40xmqm422inkssgn3ladcp68gb1s"; depends=[bdsmatrix Matrix nlme survival]; }; coxphf = derive { name="coxphf"; version="1.11"; sha256="0494szmhc7qp1qynrqf3kmna26h4ams40qr6w7qj4al54mkp0346"; depends=[survival]; }; coxphw = derive { name="coxphw"; version="3.0.0"; sha256="11pyd09dwkbixjz1riv8rz3jrp1ix6cbn1fw9nm8vnrc19x5lkz5"; depends=[survival]; }; coxrobust = derive { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; }; coxsei = derive { name="coxsei"; version="0.1"; sha256="1agr0gmyy1f2x6yspj04skgpi1drpbc1fcbwhhhjsz1j6c64xagy"; depends=[]; }; +cp4p = derive { name="cp4p"; version="0.2"; sha256="1rm6dgfiv2dx17svlzyaiqiqkpip24ns5wp8lddr6gmpws581ywl"; depends=[limma MESS multtest qvalue]; }; cpa = derive { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; }; cpca = derive { name="cpca"; version="0.1.2"; sha256="1pccsjahb1qynnxa0akhfpcmhfmdg4rd1s6pfqrdl7bwbcmq4lqf"; depends=[]; }; cpk = derive { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; cplexAPI = derive { name="cplexAPI"; version="1.2.11"; sha256="1rfvq2a561dz3szvrs9s5gsizwwp0b5rn4059v9divzw23clr2a9"; depends=[]; }; -cplm = derive { name="cplm"; version="0.7-2"; sha256="0vwj130r5wbax9ixcn0fdznh1zrr0wq48iivmlymqbhbqajmv8fb"; depends=[coda Matrix biglm ggplot2 minqa nlme reshape2 statmod tweedie Matrix]; }; -cqrReg = derive { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[Rcpp quantreg Rcpp RcppArmadillo]; }; -cquad = derive { name="cquad"; version="1.0"; sha256="0pfga45lpq5lgw0jbvp5wasj5m6maj2xr00adsab4c0c5rm7x2wf"; depends=[]; }; -crackR = derive { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[Hmisc evd]; }; +cplm = derive { name="cplm"; version="0.7-2"; sha256="0vwj130r5wbax9ixcn0fdznh1zrr0wq48iivmlymqbhbqajmv8fb"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; +cpm = derive { name="cpm"; version="2.0"; sha256="0k27r3bfqrdy3iwpzyh8mp8lr3ndcsc688g6mp5ha4blxiwgciyb"; depends=[]; }; +cqrReg = derive { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; +cquad = derive { name="cquad"; version="1.1"; sha256="09rzqdv59q81nsrpjhjbdwm3p803q51w18arjg8x8l2jcgk3zcga"; depends=[]; }; +crackR = derive { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[evd Hmisc]; }; cramer = derive { name="cramer"; version="0.9-1"; sha256="1dlapmqizff911v3jv8064ddg8viw28nq05hs77y5p4pi36gpyw4"; depends=[boot]; }; crank = derive { name="crank"; version="1.0-7"; sha256="1ni5icg1c9ypvcvcxrr7dcp1zbk4iwyns421rrqsgmpns06s59w6"; depends=[]; }; cranlogs = derive { name="cranlogs"; version="2.0.0"; sha256="13c8sa3s1xvb5naj4cy7d5azcbf716l0gp4x086sqd5dg1hqdy8b"; depends=[httr jsonlite]; }; crantastic = derive { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; -crawl = derive { name="crawl"; version="1.4-1"; sha256="175w5933h5hhhjnrc0l1kg5q24b8pclnf5sf36gj1pmg8s58d1gp"; depends=[mvtnorm sp raster]; }; -crayon = derive { name="crayon"; version="1.2.0"; sha256="1qgc1bakj5hp4fwmm2m6bzqf0mi84v6zcvw04dgck3lk00dxd0k9"; depends=[memoise]; }; +crawl = derive { name="crawl"; version="1.4-1"; sha256="175w5933h5hhhjnrc0l1kg5q24b8pclnf5sf36gj1pmg8s58d1gp"; depends=[mvtnorm raster sp]; }; +crayon = derive { name="crayon"; version="1.3.0"; sha256="1s51ijdsss02d6wwbx2r14vz03w8b17757rh43i7nc1vh36ylbjk"; depends=[memoise]; }; crblocks = derive { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; }; crch = derive { name="crch"; version="0.1-0"; sha256="1f4y2dd6lxsryyjjv569bxh1b4ymcnma0m9k7j150anzvkbrgnjn"; depends=[Formula ordinal]; }; crimCV = derive { name="crimCV"; version="0.9.3"; sha256="1p2cma78fb9a2ckmwdvpb6fc0818xw2mvq565dgiimgkdmmr0iid"; depends=[]; }; -crimelinkage = derive { name="crimelinkage"; version="0.0.3"; sha256="018ni9jgnm4k8vybz99drsx8phb0ar3x0raa5ydkfpgqp525sayi"; depends=[igraph geosphere]; }; -crmn = derive { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[]; }; +crimelinkage = derive { name="crimelinkage"; version="0.0.3"; sha256="018ni9jgnm4k8vybz99drsx8phb0ar3x0raa5ydkfpgqp525sayi"; depends=[geosphere igraph]; }; +crmn = derive { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; }; crn = derive { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; crossReg = derive { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; }; crossdes = derive { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; }; -crossmatch = derive { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[survival nbpMatching]; }; +crossmatch = derive { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; crossval = derive { name="crossval"; version="1.0.2"; sha256="1imqmrr86yr2ml9x8cycnlr7d8yymyyypi87kxqjc32s2r16s0cx"; depends=[]; }; crp_CSFP = derive { name="crp.CSFP"; version="2.0"; sha256="0ji208hn3zimql0xhy8bl7w0vg40szw28fia7k1f7g9z0wbl9xqp"; depends=[MASS]; }; -crqa = derive { name="crqa"; version="1.0.5"; sha256="0kiw90p89mf207mmky98g2d4l9mnhzi4dy08d810nm16wiqabkw4"; depends=[Matrix tseriesChaos fields pracma]; }; +crqa = derive { name="crqa"; version="1.0.5"; sha256="0kiw90p89mf207mmky98g2d4l9mnhzi4dy08d810nm16wiqabkw4"; depends=[fields Matrix pracma tseriesChaos]; }; crrSC = derive { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; crrstep = derive { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; crs = derive { name="crs"; version="0.15-24"; sha256="08k8vim4n85ll16zpkwbf3riz641kafn699qsg0h746zqzi1kfn7"; depends=[boot np quantreg rgl]; }; -crunch = derive { name="crunch"; version="1.1.1"; sha256="0a1nja6nnhga4f9kq4wy330pdrl8mj9c2mr75fdqkqgdll7dd96j"; depends=[httr jsonlite RCurl]; }; +crunch = derive { name="crunch"; version="1.2.1"; sha256="0p3d7iwphywyfb0m9s3fnqhdhf9klgf1cswilaz9ngxfzh5g3df2"; depends=[httr jsonlite RCurl]; }; csSAM = derive { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csampling = derive { name="csampling"; version="1.2-2"; sha256="0gj85cgc3lgv7isqbkng4wgzg8gqcic89768q2p23k4jhhn6xm2w"; depends=[marg statmod survival]; }; -cshapes = derive { name="cshapes"; version="0.4-2"; sha256="015mkh0iwdbhpbk8gpnq48pp026mfidd69rj70arpmg3knd2jvff"; depends=[sp maptools plyr]; }; +cshapes = derive { name="cshapes"; version="0.4-2"; sha256="015mkh0iwdbhpbk8gpnq48pp026mfidd69rj70arpmg3knd2jvff"; depends=[maptools plyr sp]; }; cslogistic = derive { name="cslogistic"; version="0.1-3"; sha256="1s8p3qpz81nn6zr0pzw6h9ca3p6ahd8zj640vy5gcb5waqwj6bfj"; depends=[mvtnorm]; }; csn = derive { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; csrplus = derive { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; }; @@ -2979,17 +3049,17 @@ cudaBayesregData = derive { name="cudaBayesregData"; version="0.3-11"; sha256="1 cudia = derive { name="cudia"; version="0.1"; sha256="1ms3bc8sp6l3bm75j418mmb707sy3gyvxznhfias3nd4sw7i074x"; depends=[MCMCpack mvtnorm]; }; cumSeg = derive { name="cumSeg"; version="1.1"; sha256="01hn3j1i7bi2r9vsqwbgy1f1alcisxyf4316xx57bg82lb34d0s5"; depends=[lars]; }; cumplyr = derive { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; }; -curl = derive { name="curl"; version="0.5"; sha256="1fws0402amazfa9wihgydrwrl19rmhi67shc3r1g8hvzfvax5ham"; depends=[]; }; -currentSurvival = derive { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[survival cmprsk]; }; -curvHDR = derive { name="curvHDR"; version="1.0-3"; sha256="0rq72prxv2r5nicss9mh4wpkfjvlbb885w85ag4qrqijzq6y8q04"; depends=[feature geometry hdrcde ks misc3d ptinpoly rgl]; }; -curvetest = derive { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_oo R_methodsS3]; }; +curl = derive { name="curl"; version="0.8"; sha256="1j24w2hswcs3hl47b60rz3scbqpd2s2dfa2fbf1c9xxb3fi1m38w"; depends=[]; }; +currentSurvival = derive { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[cmprsk survival]; }; +curvHDR = derive { name="curvHDR"; version="1.0-3"; sha256="0rq72prxv2r5nicss9mh4wpkfjvlbb885w85ag4qrqijzq6y8q04"; depends=[feature flowCore geometry hdrcde ks misc3d ptinpoly rgl]; }; +curvetest = derive { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_methodsS3 R_oo]; }; cutoffR = derive { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; cuttlefish_model = derive { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; }; -cvAUC = derive { name="cvAUC"; version="1.1.0"; sha256="13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"; depends=[ROCR data_table]; }; -cvTools = derive { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase lattice robustbase]; }; +cvAUC = derive { name="cvAUC"; version="1.1.0"; sha256="13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"; depends=[data_table ROCR]; }; +cvTools = derive { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; cvplogistic = derive { name="cvplogistic"; version="3.1-0"; sha256="1lm66nn0q7665r64rdslxp35b7drdss4mys42ks54xdydcminns9"; depends=[]; }; cvq2 = derive { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; -cvxclustr = derive { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[Matrix igraph]; }; +cvxclustr = derive { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[igraph Matrix]; }; cwhmisc = derive { name="cwhmisc"; version="5.0"; sha256="0b70ssss48kpjyimwm8hwcx82whg77j40qxaaj4vhhqc8d2bzgd2"; depends=[lattice]; }; cwm = derive { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; cxxfunplus = derive { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; @@ -2997,102 +3067,107 @@ cycloids = derive { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bf cyphid = derive { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; }; cytoDiv = derive { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; d3Network = derive { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; +dMod = derive { name="dMod"; version="0.1"; sha256="0170hvgngwxr0qfl7knmj0l2gg053xj5yfd5hkfyjnl6ivcsw3c9"; depends=[cOde ggplot2 trust]; }; dae = derive { name="dae"; version="2.7-0"; sha256="1pfd3zyvs29ij8xa1ngz2din4srl45rjnjc576h1mz16l7h5kx53"; depends=[ggplot2]; }; -daewr = derive { name="daewr"; version="1.1-4"; sha256="0pmz4721999vf023hpvsf17k5fgqpwnisnwssmav46glhmzl2cyj"; depends=[lattice FrF2 BsMD]; }; -daff = derive { name="daff"; version="0.1.4"; sha256="1g08m9qyrlwxdy9w18132dc9klz6ayw5jbn700vkzvqibfc1l7cx"; depends=[V8 jsonlite]; }; +daewr = derive { name="daewr"; version="1.1-4"; sha256="0pmz4721999vf023hpvsf17k5fgqpwnisnwssmav46glhmzl2cyj"; depends=[BsMD FrF2 lattice]; }; +daff = derive { name="daff"; version="0.1.4"; sha256="1g08m9qyrlwxdy9w18132dc9klz6ayw5jbn700vkzvqibfc1l7cx"; depends=[jsonlite V8]; }; dafs = derive { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; }; dagR = derive { name="dagR"; version="1.1.3"; sha256="13jyhwjvvrjjja18rqzfdcw9ck90qm5yjwd25nygxgdf1894y03b"; depends=[]; }; dagbag = derive { name="dagbag"; version="1.1"; sha256="1hpg7fs1yhnycziahscymkr0s3a2lyasfpj0cg677va73nrpdz12"; depends=[]; }; dams = derive { name="dams"; version="0.1"; sha256="0h0chh9ahsfvqhv1a0dfw88q7gdl1d0w11qcw0w4qmc2ipsl52i6"; depends=[RCurl]; }; -darch = derive { name="darch"; version="0.9.1"; sha256="0syrzmmz43msd51whkb4xy5n0kgcl50yw4w3i9sdd9k20glvwpsx"; depends=[futile_logger ff]; }; +darch = derive { name="darch"; version="0.9.1"; sha256="0syrzmmz43msd51whkb4xy5n0kgcl50yw4w3i9sdd9k20glvwpsx"; depends=[ff futile_logger]; }; darts = derive { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; dashboard = derive { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; }; data_table = derive { name="data.table"; version="1.9.4"; sha256="0gsnjjly3mxwfs6q0kjr42vr234mprp8kcyzcsa4dqf2ya2gs1s6"; depends=[chron reshape2]; }; data_tree = derive { name="data.tree"; version="0.1.6"; sha256="09pk4c5jkj69m6sxa2pbs1wh1w4rsg799w72fx9ib4jv22hjvrhc"; depends=[R6]; }; dataQualityR = derive { name="dataQualityR"; version="1.0"; sha256="0f2410sd6kldv7zkqsmbz1js0p5iq7zwlnfwmmnlbrd303p35p3j"; depends=[]; }; -dataRetrieval = derive { name="dataRetrieval"; version="2.2.1"; sha256="1mq32blqdsc1zj3l7wbxdc9asl2nkrby5kijdk0rix574cxml9qm"; depends=[XML RCurl reshape2 lubridate plyr]; }; -datacheck = derive { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[stringr Hmisc shiny]; }; +dataRetrieval = derive { name="dataRetrieval"; version="2.2.1"; sha256="1mq32blqdsc1zj3l7wbxdc9asl2nkrby5kijdk0rix574cxml9qm"; depends=[lubridate plyr RCurl reshape2 XML]; }; +datacheck = derive { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; }; dataframes2xls = derive { name="dataframes2xls"; version="0.4.6"; sha256="18m4cbr3pxdn5ynxwd8klwwli3cyfjcn83pl17sn1rbavqlnkq5c"; depends=[]; }; datalist = derive { name="datalist"; version="0.2"; sha256="0q82wira0sfi63cn66f5cfyd15f19ig7pbmpk56j38a3115l2fmn"; depends=[assertthat]; }; datamap = derive { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; -datamart = derive { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[RJSONIO XML RCurl base64 gsubfn markdown]; }; -datamerge = derive { name="datamerge"; version="1.0-1"; sha256="03xb48igkh0f91iq6qc2j5xzqfy2n51ci5i850gn09mm9k4lxij1"; depends=[xtermStyle]; }; +datamart = derive { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; +datastepr = derive { name="datastepr"; version="0.0.1"; sha256="1dzx7mw9hl2f8q638m3vwva7mdlb59bgjc5rmpcjb5nxmylpx0vk"; depends=[dplyr lazyeval magrittr R6 rlist]; }; datautils = derive { name="datautils"; version="0.1.4"; sha256="0adg87p9rzz62cm0s80x71mhsg3yfg93gskv1hs1l8gaj78zd1y1"; depends=[deldir gplots gtools]; }; -dataview = derive { name="dataview"; version="2.0-9"; sha256="0519h2c33v04vwdd8nz9xmqha15svhxdj761d68qmi52jrw6858d"; depends=[xtermStyle]; }; +dataview = derive { name="dataview"; version="2.1.1"; sha256="1nn33h5c1h4a3zm1xm7sdz4s6sy0f3r53jhm7bv6qk7aiylwqf6v"; depends=[data_table xtermStyle]; }; date = derive { name="date"; version="1.2-34"; sha256="066zsddpw87x1bhl3479k6fd1wrl3x91n5rd454diwmwq2s8i5qb"; depends=[]; }; dave = derive { name="dave"; version="1.5"; sha256="0sw9hc4y9wdfbnnk6isg7z7sky6ni68pkjxdlrph5m7jcyqphz96"; depends=[labdsv vegan]; }; -dawai = derive { name="dawai"; version="1.1"; sha256="0icf8iys980z0agyba94xa16400p2vdvg8hg52vvlgfc85ikqfkx"; depends=[mvtnorm ibdreg boot]; }; +dawai = derive { name="dawai"; version="1.1"; sha256="0icf8iys980z0agyba94xa16400p2vdvg8hg52vvlgfc85ikqfkx"; depends=[boot ibdreg mvtnorm]; }; db_r = derive { name="db.r"; version="0.1.3"; sha256="1zjsj0rxg9wysl1gzm7ggphd5mi02mj0bn80kmbx1vb7aa7bnxxh"; depends=[DBI rjson RSQLite stringr]; }; -dbConnect = derive { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[RMySQL gWidgets]; }; +dbConnect = derive { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[gWidgets RMySQL]; }; dbEmpLikeGOF = derive { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; }; dbEmpLikeNorm = derive { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; }; dbarts = derive { name="dbarts"; version="0.8-5"; sha256="1w170mdfl5qz7dv1p2kqx0wnkmbz2gxh2a4p7vak1nckhz2sgpgn"; depends=[]; }; dblcens = derive { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; -dbmss = derive { name="dbmss"; version="2.2.0"; sha256="0ngf7l7nsp03jvspa7xfhal2ccaxcvjny5sd5aypfwfgrndrd71z"; depends=[spatstat Rcpp cubature Rcpp]; }; +dbmss = derive { name="dbmss"; version="2.2.0"; sha256="0ngf7l7nsp03jvspa7xfhal2ccaxcvjny5sd5aypfwfgrndrd71z"; depends=[cubature Rcpp spatstat]; }; dbstats = derive { name="dbstats"; version="1.0.4"; sha256="1miba5h5hkpb79kv9v9hqb5p66sinxpqvrw9hy9l5z4li6849yy1"; depends=[cluster pls]; }; -dcGOR = derive { name="dcGOR"; version="1.0.4"; sha256="1vvij7f2vw9xaky32wyr7h1iwcq5m3s2s46kn9vjq1jllw85phgl"; depends=[Matrix igraph dnet]; }; +dcGOR = derive { name="dcGOR"; version="1.0.4"; sha256="1vvij7f2vw9xaky32wyr7h1iwcq5m3s2s46kn9vjq1jllw85phgl"; depends=[dnet igraph Matrix]; }; dcemriS4 = derive { name="dcemriS4"; version="0.55"; sha256="15x4hjc5fwpn80h90q5x9a3p84pp3mxsmcx4hq5l0j52l9dy9nv3"; depends=[oro_nifti]; }; dclone = derive { name="dclone"; version="2.0-0"; sha256="1j8g955rvdgcmc9vnz3xizlkq8w1bslav5h72igvzzffcvqbj9hq"; depends=[coda]; }; -dcmle = derive { name="dcmle"; version="0.2-4"; sha256="0ddb0x0lwk8jgx05k747sa33d2rrj4g2p4aj0m5bw1c9d5gril0m"; depends=[dclone rjags coda lattice]; }; +dcmle = derive { name="dcmle"; version="0.2-4"; sha256="0ddb0x0lwk8jgx05k747sa33d2rrj4g2p4aj0m5bw1c9d5gril0m"; depends=[coda dclone lattice rjags]; }; dcmr = derive { name="dcmr"; version="1.0"; sha256="1a89wr1n8sykjbwa316zlmcffaysksrqnbd89anxqj8sgw9xv6jq"; depends=[ggplot2 KFAS plyr reshape2 tableplot]; }; dcv = derive { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; -ddalpha = derive { name="ddalpha"; version="1.1.0"; sha256="0kij4s24v4zchlfk4za5373ispapd1yzkp9ld2bwv4w562amnl5w"; depends=[MASS class robustbase Rcpp BH Rcpp]; }; +ddalpha = derive { name="ddalpha"; version="1.1.1"; sha256="1i0zchgp5pdfa9p1mpd9svbigbn01jqfl47nnqixzlgz1808929c"; depends=[BH class MASS Rcpp robustbase]; }; ddeploy = derive { name="ddeploy"; version="1.0.2"; sha256="115k379l39gzddvn0l45l0sr0wyd7r486i28qs2hfyjnk1288vrs"; depends=[httr jsonlite]; }; -ddst = derive { name="ddst"; version="1.03"; sha256="0zbqw4qmrh80jjgn8jzbnq3kykj1v5bsg6k751vircc0x9vnig3j"; depends=[orthopolynom evd]; }; +ddst = derive { name="ddst"; version="1.03"; sha256="0zbqw4qmrh80jjgn8jzbnq3kykj1v5bsg6k751vircc0x9vnig3j"; depends=[evd orthopolynom]; }; deSolve = derive { name="deSolve"; version="1.11"; sha256="014fbrgzlarg2w27kq9qy7631hvhlf7ldrn5g8x2xibb260832s1"; depends=[]; }; deTestSet = derive { name="deTestSet"; version="1.1.2"; sha256="142261xjlz6h9vakiks04rz7hgv9b5j6s77acavd5s5mpi51ysh7"; depends=[deSolve]; }; deal = derive { name="deal"; version="1.2-37"; sha256="1nn2blmxz3j5yzpwfviarnmabbyivc25cbfhcf814avrhpysvpxa"; depends=[]; }; deamer = derive { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; }; debug = derive { name="debug"; version="1.3.1"; sha256="0mpwi6sippxyr1l8xf48xqv6qw6pmfkxs13k1gjyd7bkzlbchgqd"; depends=[mvbutils]; }; -decctools = derive { name="decctools"; version="0.2.0"; sha256="0k5w49s9s51m7w1h5adk26nw1ypwv5g1mlal78qmx5a4jzaf5bw9"; depends=[XLConnect stringr XML reshape2 RCurl lubridate plyr]; }; +decctools = derive { name="decctools"; version="0.2.1"; sha256="01h119gdvvbfnqfxaca7ca0yhpp6wggq0b69k6ww5lnkfnlj0sgi"; depends=[lubridate plyr RCurl reshape2 stringr XLConnect XML]; }; +decisionSupport = derive { name="decisionSupport"; version="1.101.1"; sha256="08qcvdwp0wgspnfnlhkpxz3p6y43pjf32p185knw8g81wr1950ip"; depends=[msm mvtnorm]; }; decode = derive { name="decode"; version="1.1"; sha256="06c6l2s32s1vri51hbnl17sxgkl7x8537prk0zzq6zlqhkwy6j77"; depends=[]; }; -decompr = derive { name="decompr"; version="3.0.0"; sha256="06m2k3rjna6nii1fc9b3v2wijkjrknyhskr1ampbdgwligddnzay"; depends=[]; }; +decompr = derive { name="decompr"; version="4.1.0"; sha256="1agzfy7iyyzh71pb56l7438bvpsx0q2z9mxh16fc8mfnywcl2jr2"; depends=[]; }; decon = derive { name="decon"; version="1.2-4"; sha256="1v4l0xq29rm8mks354g40g9jxn0didzlxg3g7z08m0gvj29zdj7s"; depends=[]; }; deducorrect = derive { name="deducorrect"; version="1.3-5"; sha256="06lcqnay36fgkzvgbiq7b67r9lfgll3lxfr1pmx14vmivshb6mmm"; depends=[editrules]; }; deepnet = derive { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; degenes = derive { name="degenes"; version="1.1"; sha256="1xxn5j06qizywimrp1pl8z3yjdy1a167b9jnm77gmv87rp6j240c"; depends=[]; }; degreenet = derive { name="degreenet"; version="1.3-1"; sha256="0k0a1c1bv7zclrarfzf0d6avbd8zjnc3zd155jzmhi8dacr6r73w"; depends=[igraph network]; }; deldir = derive { name="deldir"; version="0.1-9"; sha256="0shzyqfqdkbhpf4hcwjjfzzizh6z56iamx2blhj79izg8xkvl2h9"; depends=[]; }; +delt = derive { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive { name="deltaPlotR"; version="1.5"; sha256="0hbaibl4b50pg9ypyhz4700w6kir4jiyyl0230a8hjmb92aqn303"; depends=[MASS]; }; -demi = derive { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[R_utils plyr devtools]; }; +demi = derive { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; }; deming = derive { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; }; demoKde = derive { name="demoKde"; version="0.9-3"; sha256="1nkvsjms1gfvjz5l7zza0cgx4yqmn2kgnax44pysn0zqmhfny8bw"; depends=[]; }; -demography = derive { name="demography"; version="1.18"; sha256="17r7sz5ikngc4qg495wmn99xawmllpx7rw2gpv8q8bypbc47wlfv"; depends=[forecast rainbow ftsa cobs mgcv strucchange RCurl]; }; +demography = derive { name="demography"; version="1.18"; sha256="17r7sz5ikngc4qg495wmn99xawmllpx7rw2gpv8q8bypbc47wlfv"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; dendextend = derive { name="dendextend"; version="0.18.3"; sha256="1s6bdkibb066yima31sn8ddp8qrwyx2zc84wf2kixs37ynhw1xi1"; depends=[magrittr whisker]; }; -dendextendRcpp = derive { name="dendextendRcpp"; version="0.5.1"; sha256="062f7yjsg196v8c09h6gvbhi0fzgwg40a8xhi751avkjc68z30cq"; depends=[Rcpp dendextend Rcpp]; }; +dendextendRcpp = derive { name="dendextendRcpp"; version="0.6.1"; sha256="125kjlfcj7y282j5g62c6j5hflvwngrm70waxym0lzr7xldwx7bk"; depends=[dendextend Rcpp]; }; dendroextras = derive { name="dendroextras"; version="0.2.1"; sha256="0k1w374r4fvfcbzhrgcvklccjggyz755z7wc2vqfi3c5hvdb9ns4"; depends=[]; }; dendsort = derive { name="dendsort"; version="0.3.2"; sha256="0qj65jraj6ksmsfsrc4f3y8m7x5lqg9bqc9yb5s3bav2r8qjyhv6"; depends=[]; }; denovolyzeR = derive { name="denovolyzeR"; version="0.1.0"; sha256="0ys8pi3wp2cvywsnh07wldv6vcb8sn7f1divpaw8f6gnw7mnhimd"; depends=[dplyr reshape]; }; -denpro = derive { name="denpro"; version="0.9.1"; sha256="0ihgk300njhp6dzm1gsmknlx4c5h6kiwprgv3l3f29s6gdxx4f6n"; depends=[]; }; +denpro = derive { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; }; densityClust = derive { name="densityClust"; version="0.1-1"; sha256="1apv9n871dshln5ccg8x3pwqi8yfx73ijfqsvzcljqnv36qpqpqd"; depends=[]; }; denstrip = derive { name="denstrip"; version="1.5.3"; sha256="10h8ivs7nd6gkf93zvqzqjb1lzfabvvs182636m67f86jfn6d4y4"; depends=[]; }; -depend_truncation = derive { name="depend.truncation"; version="2.3"; sha256="1n0v5cwmgpdyapr185s9przdsrxwaqf32038zm1na0yna8qmj8wl"; depends=[mvtnorm]; }; +depend_truncation = derive { name="depend.truncation"; version="2.4"; sha256="09jcg6gr4dy0ayayn8qvbgncnw6v76xzif90c7v64a09snhh8qv6"; depends=[mvtnorm]; }; depmix = derive { name="depmix"; version="0.9.13"; sha256="1dkwc1bjq19hjzichh78b41qslklgwib8mglbn23q9dsys8a3ccz"; depends=[MASS]; }; -depmixS4 = derive { name="depmixS4"; version="1.3-2"; sha256="18xmn5fv9wszh86ph91yypfnyrxy7j2gqrzzgkb84986fjp2sxlq"; depends=[nnet MASS Rsolnp]; }; -depth = derive { name="depth"; version="2.0-0"; sha256="1aj4cch3iwb6vz0bzj4w5r6jp2qs39g8lxi2nmpbi3m7a6qrgr2q"; depends=[abind rgl circular]; }; +depmixS4 = derive { name="depmixS4"; version="1.3-2"; sha256="18xmn5fv9wszh86ph91yypfnyrxy7j2gqrzzgkb84986fjp2sxlq"; depends=[MASS nnet Rsolnp]; }; +depth = derive { name="depth"; version="2.0-0"; sha256="1aj4cch3iwb6vz0bzj4w5r6jp2qs39g8lxi2nmpbi3m7a6qrgr2q"; depends=[abind circular rgl]; }; depthTools = derive { name="depthTools"; version="0.4"; sha256="1699r0h1ksgrlz9xafw2jnqfsc7xs0yaw97fc6dv3r11x6gxk00y"; depends=[]; }; descomponer = derive { name="descomponer"; version="1.2"; sha256="08hc3p4l8dy1h2z8ijifwlgidmac9b29g1k725yzwzbdr5jzvnzl"; depends=[taRifx]; }; descr = derive { name="descr"; version="1.1.1"; sha256="1flnz05j390izwadsv2l5bcxgl6zmq4vzz1aycfifjz75zyqqy8s"; depends=[xtable]; }; -deseasonalize = derive { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[lattice FitAR]; }; +deseasonalize = derive { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; +desiR = derive { name="desiR"; version="1.0"; sha256="10c9ld918yg5zgvf40bhlsj2i7w6i08ws26q799w9ma9splgq8sk"; depends=[]; }; designGG = derive { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; desirability = derive { name="desirability"; version="1.9"; sha256="1p3w4xk4is22gqgy2gyxj80vib8s40lgllqc2fnz66kb2cln10n6"; depends=[]; }; desire = derive { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; detect = derive { name="detect"; version="0.3-2"; sha256="1mjc8h3xb2zbj4dxala8yqbdl94knf9q0qvkc37ag1b2w4y2d2b0"; depends=[Formula]; }; detrendeR = derive { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; devEMF = derive { name="devEMF"; version="2.0"; sha256="19wraakvf7xsf1i108dz3ipl1hdixgwa6h0bizxfyajw5yqmw8mw"; depends=[]; }; -devtools = derive { name="devtools"; version="1.8.0"; sha256="14q1c6jfnvljn50ccl2irfq8awa03z8fni3n5fdsdv4l9cdwj29p"; depends=[httr RCurl memoise whisker evaluate digest rstudioapi jsonlite roxygen2 rversions git2r]; }; +devtools = derive { name="devtools"; version="1.8.0"; sha256="14q1c6jfnvljn50ccl2irfq8awa03z8fni3n5fdsdv4l9cdwj29p"; depends=[digest evaluate git2r httr jsonlite memoise RCurl roxygen2 rstudioapi rversions whisker]; }; df2json = derive { name="df2json"; version="0.0.2"; sha256="10m7xn7rm4aql1bzpckjcx5kvdw44m1pxgzqkgkd40lzqb1cwk18"; depends=[rjson]; }; -dfcomb = derive { name="dfcomb"; version="2.1-3"; sha256="0mjvk0yc229x80z97dmnmbph9lpgfxpqagwdf57369mkwzms5kx2"; depends=[RcppArmadillo BH RcppProgress Rcpp]; }; +dfcomb = derive { name="dfcomb"; version="2.1-3"; sha256="0mjvk0yc229x80z97dmnmbph9lpgfxpqagwdf57369mkwzms5kx2"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfcrm = derive { name="dfcrm"; version="0.2-2"; sha256="1kwgxfqnz2bcicyb27lp6bnvrj30lqjpn5fg7kaqshgkj53g0s4f"; depends=[]; }; dfexplore = derive { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; }; -dfmta = derive { name="dfmta"; version="1.3-2"; sha256="1x3hz6by82mjcs8y6h7n380wr884dlx2pjpfsbz84zrk78hhnh5g"; depends=[RcppArmadillo BH RcppProgress Rcpp]; }; +dfmta = derive { name="dfmta"; version="1.3-2"; sha256="1x3hz6by82mjcs8y6h7n380wr884dlx2pjpfsbz84zrk78hhnh5g"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfoptim = derive { name="dfoptim"; version="2011.8-1"; sha256="19j0h5xdrbmykz2nrjrwqwaw7466zvqaiwafrm1jc12mk5azfcqx"; depends=[]; }; dga = derive { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; }; dglars = derive { name="dglars"; version="1.0.5"; sha256="02g8x4p98jv3cfwfxvh68aivb72651w4977g4xqksq0p4nqcs636"; depends=[]; }; dglm = derive { name="dglm"; version="1.8.1"; sha256="12q49nf30ji4c7vysf2s48bif7crwlmqn8cx0wy23xlhj5x2p4b3"; depends=[statmod]; }; -dgmb = derive { name="dgmb"; version="1.1"; sha256="134ckgq7rsdypg3c586kkhr9rx5ya34smp38i9lzvbdanzrpf33w"; depends=[MASS abind]; }; +dgmb = derive { name="dgmb"; version="1.1"; sha256="134ckgq7rsdypg3c586kkhr9rx5ya34smp38i9lzvbdanzrpf33w"; depends=[abind MASS]; }; dgof = derive { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; }; -dhglm = derive { name="dhglm"; version="1.2"; sha256="14wa0xkwb1qvkynk95aw6y4rx3jjdki19wdydg3wv5nfagcc4vdz"; depends=[Matrix numDeriv boot]; }; +dhglm = derive { name="dhglm"; version="1.2"; sha256="14wa0xkwb1qvkynk95aw6y4rx3jjdki19wdydg3wv5nfagcc4vdz"; depends=[boot Matrix numDeriv]; }; +diagonals = derive { name="diagonals"; version="0.3.0"; sha256="066v1n1l7qkc8m5m9057n3gphiz5054b5h30ik3iwhfkk536364q"; depends=[]; }; diagram = derive { name="diagram"; version="1.6.3"; sha256="1iga574r31hz7g50nmicbah4rj4l46w6lgw3sz1b69iv6hpp7sq1"; depends=[shape]; }; diaplt = derive { name="diaplt"; version="1.2.1"; sha256="0pya6rqzsvc5nd3smhydvabarglc4nn04q605vbllmbhq9rv00pa"; depends=[]; }; dice = derive { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; @@ -3100,25 +3175,25 @@ dichromat = derive { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3m dicionariosIBGE = derive { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; }; dielectric = derive { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; difR = derive { name="difR"; version="4.6"; sha256="1803j0ql1g8gdy9i0wy4sz9sbl52dqjqcwbnknyrb34r51jmij5k"; depends=[lme4 ltm]; }; -diffEq = derive { name="diffEq"; version="1.0-1"; sha256="1xmb19hs0x913g45szmm26xx5xp85v182wqf0lnl4raxaf47yhkm"; depends=[deSolve rootSolve bvpSolve ReacTran deTestSet shape]; }; +diffEq = derive { name="diffEq"; version="1.0-1"; sha256="1xmb19hs0x913g45szmm26xx5xp85v182wqf0lnl4raxaf47yhkm"; depends=[bvpSolve deSolve deTestSet ReacTran rootSolve shape]; }; diffIRT = derive { name="diffIRT"; version="1.4"; sha256="13axwzsrlr1akj4viwsyaplh11krixg3l07qi58c81jrcrmqpgv1"; depends=[statmod]; }; -diffdepprop = derive { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee rootSolve PropCIs]; }; -diffeR = derive { name="diffeR"; version="0.0-2"; sha256="1dkmwr6klqx950g9214n2rbd0p3k668w5217b0nvz6vfp3gczkjz"; depends=[rgdal raster ggplot2]; }; +diffdepprop = derive { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; }; +diffeR = derive { name="diffeR"; version="0.0-2"; sha256="1dkmwr6klqx950g9214n2rbd0p3k668w5217b0nvz6vfp3gczkjz"; depends=[ggplot2 raster rgdal]; }; diffractometry = derive { name="diffractometry"; version="0.1-8"; sha256="1m6cyf1kxm9xf1z4mn4iz0ggiy9wcyi8ysbgcsk7l78y7nqh1h99"; depends=[]; }; -diffusionMap = derive { name="diffusionMap"; version="1.1-0"; sha256="1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3"; depends=[scatterplot3d igraph Matrix]; }; +diffusionMap = derive { name="diffusionMap"; version="1.1-0"; sha256="1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3"; depends=[igraph Matrix scatterplot3d]; }; digest = derive { name="digest"; version="0.6.8"; sha256="0m9grqv67hhf51lz10whymhw0g0d98466ka694kya5x95hn44qih"; depends=[]; }; digitalPCR = derive { name="digitalPCR"; version="1.0"; sha256="0gjxlw0f2msh2x5jpzkpq8xc67zpv560q4vql5nwifm44dwar753"; depends=[]; }; -dils = derive { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp Rcpp]; }; +dils = derive { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; }; dinamic = derive { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; -diptest = derive { name="diptest"; version="0.75-6"; sha256="158azvdf76h5mp26lw2mjzwp4hwc2psqd9kn5989y4a1jmzxp2bg"; depends=[]; }; -directPA = derive { name="directPA"; version="1.1"; sha256="0sri3981vk997qjl3c3zchn3vx0h3pdbnagcvds4bnrpycvn4bz8"; depends=[rgl calibrate]; }; +diptest = derive { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; +directPA = derive { name="directPA"; version="1.1"; sha256="0sri3981vk997qjl3c3zchn3vx0h3pdbnagcvds4bnrpycvn4bz8"; depends=[calibrate rgl]; }; directlabels = derive { name="directlabels"; version="2013.6.15"; sha256="083cwahz320r4w4jbh62pxmzn1i1hixp398zm8f2fpzh4qp5y44g"; depends=[quadprog]; }; dirmult = derive { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; -discSurv = derive { name="discSurv"; version="1.0.0"; sha256="0yq0vpdg6n21ar2r3jbgv2kxy7jn6gssyrrs6vfw4rk1q0bw6b2w"; depends=[functional Matrix matrixcalc mvtnorm numDeriv caret mgcv]; }; +discSurv = derive { name="discSurv"; version="1.1.0"; sha256="0jj055w0m749fdd90cqlyklxnjxfjhly179lmg9xfl69w4xrjc2l"; depends=[caret functional Matrix matrixcalc mgcv mvtnorm numDeriv]; }; disclap = derive { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; -disclapmix = derive { name="disclapmix"; version="1.6"; sha256="0g1yg4n4pfy0295faw2scfh45m978ymmlx9bl3h8849kfaizkysi"; depends=[Rcpp disclap cluster Rcpp]; }; +disclapmix = derive { name="disclapmix"; version="1.6.1"; sha256="1sjmw9yb7py8nk4w73qdjwiwmrjs387x6lhh711sgf87p5834fxp"; depends=[cluster disclap Rcpp]; }; discreteMTP = derive { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; -discreteRV = derive { name="discreteRV"; version="1.2.1"; sha256="06gvfn5v54gbal7kpnfcxwaacbq8354yvc47kjipn29bqpw9b6mb"; depends=[plyr MASS]; }; +discreteRV = derive { name="discreteRV"; version="1.2.1"; sha256="06gvfn5v54gbal7kpnfcxwaacbq8354yvc47kjipn29bqpw9b6mb"; depends=[MASS plyr]; }; discretization = derive { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; discrimARTs = derive { name="discrimARTs"; version="0.2"; sha256="088v4awic4bhzqcr7nvk2nldf8cm1jqshg2pzjd2l2p1cgwmlxib"; depends=[RUnit]; }; diseasemapping = derive { name="diseasemapping"; version="1.2.0"; sha256="1l6w1f4zxfp1hrhvmxgijj2kwy7x0na2yf75ifqrbh1i499j8zjq"; depends=[sp]; }; @@ -3130,102 +3205,104 @@ displayHTS = derive { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204 dispmod = derive { name="dispmod"; version="1.1"; sha256="141gzhnmxxl495cpjgd4wnvdrbz6715m6sd1pycrbaqrsdc1pv57"; depends=[]; }; disposables = derive { name="disposables"; version="1.0.0"; sha256="0xd8war6vav8swpwgmyi9hd6xv0j6j72yrk4sdcwiwzgs4l8cbfj"; depends=[]; }; dissUtils = derive { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; +distcomp = derive { name="distcomp"; version="0.25.1"; sha256="04cq4hsv1yl65cchhran9s3844w4knsbfja5wxfib5gh4dadriwk"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; distfree_cr = derive { name="distfree.cr"; version="1.0"; sha256="13y714l6b3kkpp75fdrsbdclgj1vw1xsvbj9pxi4lkwf11wwmrqr"; depends=[]; }; distillery = derive { name="distillery"; version="1.0-1"; sha256="0hfj4qbfb5219dm7yrgf2h4jrh2qsjhwrbv8gbrxcr0xf6gqbxmv"; depends=[]; }; distory = derive { name="distory"; version="1.4.2"; sha256="12j19cb1b4prm8m43gya15kia1ii1k0yy7hkngpn2vsyk7n2z65m"; depends=[ape]; }; -distr = derive { name="distr"; version="2.5.3"; sha256="13ssdidbh4x534f0vvhfpi5cdrhlpmrz8s0y33q7ccf3dfmdsyan"; depends=[startupmsg sfsmisc SweaveListingUtils]; }; -distrDoc = derive { name="distrDoc"; version="2.5.1"; sha256="02wcqy9z36lxkpxy42vj1yv7x2v3i57rngpw58s7immzp5j3dlam"; depends=[distr distrEx distrSim distrTEst distrTeach RandVar distrMod MASS SweaveListingUtils startupmsg]; }; -distrEllipse = derive { name="distrEllipse"; version="2.5"; sha256="1slzzmcf09mqqba287rpgpwbsq6j5lprjgxda5lrc21znvrgfxn3"; depends=[mvtnorm setRNG distr distrEx distrSim]; }; +distr = derive { name="distr"; version="2.5.3"; sha256="13ssdidbh4x534f0vvhfpi5cdrhlpmrz8s0y33q7ccf3dfmdsyan"; depends=[sfsmisc startupmsg SweaveListingUtils]; }; +distrDoc = derive { name="distrDoc"; version="2.5.1"; sha256="02wcqy9z36lxkpxy42vj1yv7x2v3i57rngpw58s7immzp5j3dlam"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg SweaveListingUtils]; }; +distrEllipse = derive { name="distrEllipse"; version="2.5"; sha256="1slzzmcf09mqqba287rpgpwbsq6j5lprjgxda5lrc21znvrgfxn3"; depends=[distr distrEx distrSim mvtnorm setRNG]; }; distrEx = derive { name="distrEx"; version="2.5"; sha256="0mbccd53r9wl875i702j14wlrv7pjgrwzlnyc511cqa5pg3mn81i"; depends=[distr]; }; -distrMod = derive { name="distrMod"; version="2.5.3"; sha256="1xa6a8fxhb87z4bimvnrylm63q9m90kmm49w2dik79a9d5x5q29b"; depends=[distr distrEx RandVar MASS sfsmisc startupmsg]; }; +distrMod = derive { name="distrMod"; version="2.5.3"; sha256="1xa6a8fxhb87z4bimvnrylm63q9m90kmm49w2dik79a9d5x5q29b"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; distrRmetrics = derive { name="distrRmetrics"; version="2.5"; sha256="0c7fhckw7hav68gag8ymgicywl2vbnvqpjxca0x24wpdi1gs4jf6"; depends=[distr fBasics fGarch]; }; -distrSim = derive { name="distrSim"; version="2.5.2"; sha256="0ipg4l2vyifaj1r9a4cc8kg32s65jpz5wxrlnrix95xk5wasdpbh"; depends=[setRNG distr]; }; -distrTEst = derive { name="distrTEst"; version="2.5"; sha256="1swl4v70gkkpidddsgqf0dqz9j0xz5j1wk44bhpi4ficim7hap3l"; depends=[setRNG distrSim startupmsg]; }; +distrSim = derive { name="distrSim"; version="2.5.2"; sha256="0ipg4l2vyifaj1r9a4cc8kg32s65jpz5wxrlnrix95xk5wasdpbh"; depends=[distr setRNG]; }; +distrTEst = derive { name="distrTEst"; version="2.5"; sha256="1swl4v70gkkpidddsgqf0dqz9j0xz5j1wk44bhpi4ficim7hap3l"; depends=[distrSim setRNG startupmsg]; }; distrTeach = derive { name="distrTeach"; version="2.5"; sha256="0a7qfqpirzcd94dvcvmprhhj2j1yl3lpizsi8mdqr19zcp6dw21k"; depends=[distr distrEx]; }; -distrom = derive { name="distrom"; version="0.3-2"; sha256="08brd85kg7sfvxy9xxjbpzh5zirfxyhjvl9zsxnqy0zlhq7p05q8"; depends=[Matrix gamlr]; }; +distrom = derive { name="distrom"; version="0.3-2"; sha256="08brd85kg7sfvxy9xxjbpzh5zirfxyhjvl9zsxnqy0zlhq7p05q8"; depends=[gamlr Matrix]; }; divagis = derive { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; -diveMove = derive { name="diveMove"; version="1.3.9"; sha256="0782b8fvh676g6fy05g1da52q398rxmgz46vk6yxwrmnvg78wcq5"; depends=[caTools KernSmooth quantreg geosphere]; }; -diveRsity = derive { name="diveRsity"; version="1.9.73"; sha256="07lln4fkphwk8kgvw4hsi7rghpwza8967z2gkb2265l28irv7ffm"; depends=[ggplot2 shiny qgraph Rcpp Rcpp]; }; -diversitree = derive { name="diversitree"; version="0.9-7"; sha256="0hr3hzrrbmfqbzcwn18lnqmychs9f21j1x214zry0jmw9pnai0s0"; depends=[deSolve ape subplex Rcpp Rcpp]; }; -divo = derive { name="divo"; version="0.1.1"; sha256="10kymbvp46rzdd6a6p2fri9424sdxj2bhhv0fld7ikk71xgpfdrp"; depends=[RcppCNPy cluster]; }; -dixon = derive { name="dixon"; version="0.0-5"; sha256="0x7x0l7p8kmkfqqqah8hck2r96b3w8padd41skd3q35vq8kmnsqc"; depends=[splancs spatstat]; }; -dkDNA = derive { name="dkDNA"; version="0.1.0"; sha256="1waqj8l48yqlzi3rb3ilxyx79n5d4w0sp02flvynwaxck6jvh8gc"; depends=[]; }; +diveMove = derive { name="diveMove"; version="1.3.9"; sha256="0782b8fvh676g6fy05g1da52q398rxmgz46vk6yxwrmnvg78wcq5"; depends=[caTools geosphere KernSmooth quantreg]; }; +diveRsity = derive { name="diveRsity"; version="1.9.73"; sha256="07lln4fkphwk8kgvw4hsi7rghpwza8967z2gkb2265l28irv7ffm"; depends=[ggplot2 qgraph Rcpp shiny]; }; +diversitree = derive { name="diversitree"; version="0.9-7"; sha256="0hr3hzrrbmfqbzcwn18lnqmychs9f21j1x214zry0jmw9pnai0s0"; depends=[ape deSolve Rcpp subplex]; }; +divo = derive { name="divo"; version="0.1.1"; sha256="10kymbvp46rzdd6a6p2fri9424sdxj2bhhv0fld7ikk71xgpfdrp"; depends=[cluster RcppCNPy]; }; +dixon = derive { name="dixon"; version="0.0-5"; sha256="0x7x0l7p8kmkfqqqah8hck2r96b3w8padd41skd3q35vq8kmnsqc"; depends=[spatstat splancs]; }; +dkDNA = derive { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; dlm = derive { name="dlm"; version="1.1-4"; sha256="0hyphl90bqc16j7in750pmiyq28hmc46kxgv7gj17c8xl9c9xqxm"; depends=[]; }; -dlmap = derive { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[qtl ibdreg wgaim nlme mgcv]; }; +dlmap = derive { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[ibdreg mgcv nlme qtl wgaim]; }; dlmodeler = derive { name="dlmodeler"; version="1.4-2"; sha256="06gqvk2wrzz4kpsh4vyrbqwmxirsvg78qj7clvcxdac0sfqn4gl7"; depends=[KFAS]; }; dlnm = derive { name="dlnm"; version="2.1.3"; sha256="044khdhk4dgd09cwmidsfa2rgd43h7wnd48bmmrnsvj3314bic0f"; depends=[nlme]; }; dma = derive { name="dma"; version="1.2-2"; sha256="18v40rr4qx98ap38vr77xxvl7y3a6cqfky3z4s5zc87q6y1z5g2s"; depends=[MASS mnormt]; }; -dmm = derive { name="dmm"; version="1.6-1"; sha256="0bls3ka8fwnsd0v74ncy8nbgxk0a3z1gw9dgm3vibz1lsypfs72a"; depends=[MASS Matrix nadiv robustbase pls]; }; -dmt = derive { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[mvtnorm MASS Matrix]; }; +dmm = derive { name="dmm"; version="1.6-1"; sha256="0bls3ka8fwnsd0v74ncy8nbgxk0a3z1gw9dgm3vibz1lsypfs72a"; depends=[MASS Matrix nadiv pls robustbase]; }; +dmt = derive { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; }; dna = derive { name="dna"; version="1.1-1"; sha256="0gw70h1j67h401hdvd38d6jz71x1a6xlz6ziba6961zy6m3k5xbm"; depends=[]; }; -dnet = derive { name="dnet"; version="1.0.6"; sha256="0zhv2yfrlhfwjbgbvjzmw3c5g5rj33n8l2npdf6b4nqz0c0hc1jn"; depends=[igraph Matrix]; }; -doBy = derive { name="doBy"; version="4.5-13"; sha256="07ppghcf381wc9s9igsi3viy6p86b5bmpfm1s8iwq7ca4j89qw42"; depends=[survival MASS Matrix]; }; +dnet = derive { name="dnet"; version="1.0.6"; sha256="0zhv2yfrlhfwjbgbvjzmw3c5g5rj33n8l2npdf6b4nqz0c0hc1jn"; depends=[Biobase graph igraph Matrix Rgraphviz supraHex]; }; +doBy = derive { name="doBy"; version="4.5-13"; sha256="07ppghcf381wc9s9igsi3viy6p86b5bmpfm1s8iwq7ca4j89qw42"; depends=[MASS Matrix survival]; }; doMC = derive { name="doMC"; version="1.3.3"; sha256="0g5psgk92b2zk9fkap3a86haay2y0kfz75cyk3d1ila9m7cd2cn4"; depends=[foreach iterators]; }; doMPI = derive { name="doMPI"; version="0.2.1"; sha256="1d2pkxsap656l7h88q37ymy1jw0zd4n9h892511a1a230dxwc0xh"; depends=[foreach iterators Rmpi]; }; doParallel = derive { name="doParallel"; version="1.0.8"; sha256="1z6cwqnjvqsbck44padqkv4r75cy32p5vrlkkan4mq84cc8062nx"; depends=[foreach iterators]; }; -doRNG = derive { name="doRNG"; version="1.6"; sha256="0yvg4052gfdh54drn6xnpiqyd77p8765yi525nag3ismw2yn9y58"; depends=[foreach rngtools iterators pkgmaker]; }; -doRedis = derive { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9bf5wbfm6y9gi233s8qgsk4dnr84n3nizx"; depends=[rredis foreach iterators]; }; +doRNG = derive { name="doRNG"; version="1.6"; sha256="0yvg4052gfdh54drn6xnpiqyd77p8765yi525nag3ismw2yn9y58"; depends=[foreach iterators pkgmaker rngtools]; }; +doRedis = derive { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9bf5wbfm6y9gi233s8qgsk4dnr84n3nizx"; depends=[foreach iterators rredis]; }; doSNOW = derive { name="doSNOW"; version="1.0.12"; sha256="0j71n0l9lbvwllw9iigvjgv0x8z2j57grl3yazkgcyzy0mcgf741"; depends=[foreach iterators snow]; }; docopt = derive { name="docopt"; version="0.4.3.3"; sha256="1vpq5q3kfgwijrgblvfipxqkw0m75rahnlmddpiyfgziyszbmidm"; depends=[stringr]; }; documair = derive { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; -domino = derive { name="domino"; version="0.2-6"; sha256="0xbp9gb38gxfdxfbzm792g4fnjsfp2ncncm8cmyra5wja6qwcwl8"; depends=[]; }; -dosresmeta = derive { name="dosresmeta"; version="1.3.0"; sha256="0yfm8dkds8abdl6jrib5vvgkyrd5cl5a99qs27safxx0fcpdiz4k"; depends=[mvmeta aod Matrix]; }; -dostats = derive { name="dostats"; version="1.3.1"; sha256="0xcp9arpvqb7am6caiazlgllvd3hhk4gqjd2wizr2jc5dkwfl4qn"; depends=[]; }; -dotenv = derive { name="dotenv"; version="1.0"; sha256="1lxwvrhqcwj9q24x30xzrw8qqhxgyr88ja3fajm5hf3pwbw85yls"; depends=[magrittr falsy]; }; +domino = derive { name="domino"; version="0.2-7"; sha256="1wp2rikyggjvqpg29qjn3zcydyplmzhmbgq3xxrlq92swdyzmyy5"; depends=[]; }; +dosresmeta = derive { name="dosresmeta"; version="1.3.0"; sha256="0yfm8dkds8abdl6jrib5vvgkyrd5cl5a99qs27safxx0fcpdiz4k"; depends=[aod Matrix mvmeta]; }; +dostats = derive { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; +dotenv = derive { name="dotenv"; version="1.0"; sha256="1lxwvrhqcwj9q24x30xzrw8qqhxgyr88ja3fajm5hf3pwbw85yls"; depends=[falsy magrittr]; }; downloader = derive { name="downloader"; version="0.3"; sha256="0jpq8z3i9fkgs8wwjrq5qd7qfi5w3rxmzmsi1c1dxlnxzzhg6kxq"; depends=[digest]; }; -dpa = derive { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[sem igraph]; }; -dpcR = derive { name="dpcR"; version="0.1.4.0"; sha256="0fv17vzlsjb5cy1f0ll5gi5y8npavp2y7frzc595na5g15xphmxc"; depends=[binom chipPCR e1071 dgof multcomp qpcR pracma rateratio_test signal shiny spatstat]; }; +dpa = derive { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; }; +dpcR = derive { name="dpcR"; version="0.1.4.0"; sha256="0fv17vzlsjb5cy1f0ll5gi5y8npavp2y7frzc595na5g15xphmxc"; depends=[binom chipPCR dgof e1071 multcomp pracma qpcR rateratio_test shiny signal spatstat]; }; dpglasso = derive { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; -dplR = derive { name="dplR"; version="1.6.2"; sha256="1w8p4pfzpvarwx9an3zm158pybif6p86k87gxqr2m2fgjsxzf9nb"; depends=[gmp digest lattice png stringi stringr XML]; }; +dplR = derive { name="dplR"; version="1.6.3"; sha256="0w94rdkpw5pbl9ywfvgpmzkwc88m5d5dwii5kw312nfhkb549q4x"; depends=[digest gmp lattice Matrix matrixStats png R_utils stringi stringr XML]; }; dplRCon = derive { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; -dplyr = derive { name="dplyr"; version="0.4.1"; sha256="0kcwg922gzvwz1vfazwknb2sn2z9wfg9xhndi4280lg8cjdllcmw"; depends=[assertthat R6 Rcpp magrittr lazyeval DBI Rcpp BH]; }; -dpmixsim = derive { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[oro_nifti cluster]; }; +dplyr = derive { name="dplyr"; version="0.4.2"; sha256="1b0nb7agzb515jrm33sv8yhszsf06d9fga6pgdxi2kwl71vjfrd6"; depends=[assertthat BH DBI lazyeval magrittr R6 Rcpp]; }; +dpmixsim = derive { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[cluster oro_nifti]; }; +dpmr = derive { name="dpmr"; version="0.1.7-1"; sha256="0nh45hg9za9w4w4syrrg54s1fpn6iikv431qkdjyinv8y1a3klga"; depends=[digest httr jsonlite magrittr rio]; }; dr = derive { name="dr"; version="3.0.9"; sha256="0gmxa5mbmkz54l75ss6kj5ka5kingf02pqj0xsfjxfv0311hwm52"; depends=[MASS]; }; -drat = derive { name="drat"; version="0.0.3"; sha256="1dxgicvjdkhiwkyadxwb6lfvvidx0w2y5sd5dm49chlv6zgjaa2i"; depends=[]; }; +drat = derive { name="drat"; version="0.0.4"; sha256="0pq74a0f1pkgfzgrh0r2xa2xkgxbanp8a5v13bmma09ghy5vnrhm"; depends=[]; }; drawExpression = derive { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; -drc = derive { name="drc"; version="2.5-12"; sha256="1gw78n0w262wl6mdm5wvyp3f0hvrb2kj714acdxz84h2znxr9879"; depends=[MASS car gtools multcomp plotrix scales]; }; -drfit = derive { name="drfit"; version="0.6.3"; sha256="0vx5niw6mfg85937sbjmc0z0gdgf9aj43rmkn1gljky7pq4j3hfn"; depends=[MASS RODBC drc]; }; -drgee = derive { name="drgee"; version="1.1.1"; sha256="0fb5k26c76d5hh09z97mhzx02fr52y2wixgxfgndbp48w826iqpc"; depends=[nleqslv survival]; }; +drc = derive { name="drc"; version="2.5-12"; sha256="1gw78n0w262wl6mdm5wvyp3f0hvrb2kj714acdxz84h2znxr9879"; depends=[car gtools MASS multcomp plotrix scales]; }; +drfit = derive { name="drfit"; version="0.6.3"; sha256="0vx5niw6mfg85937sbjmc0z0gdgf9aj43rmkn1gljky7pq4j3hfn"; depends=[drc MASS RODBC]; }; +drgee = derive { name="drgee"; version="1.1.3"; sha256="0gib0f5l55md5zymi7j01g3dfif0j2ki01cy5nca6j0ag500k54j"; depends=[nleqslv survival]; }; drm = derive { name="drm"; version="0.5-8"; sha256="1p6ixd7hnv41gfmvan3rv9xzz1279hmrnvfrl6pxwzs9zcnbb53a"; depends=[]; }; drmdel = derive { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; dropR = derive { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; -drsmooth = derive { name="drsmooth"; version="1.0"; sha256="1cxhj28dkll704kif040vqnp9grb61v891rswvyx7aa9216156px"; depends=[car clinfun mgcv multcomp pgirmess DTK segmented mvtnorm]; }; +drsmooth = derive { name="drsmooth"; version="1.0"; sha256="1cxhj28dkll704kif040vqnp9grb61v891rswvyx7aa9216156px"; depends=[car clinfun DTK mgcv multcomp mvtnorm pgirmess segmented]; }; ds = derive { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; }; dsample = derive { name="dsample"; version="0.91.1"; sha256="0nxx3x55zj089aq2shk7cg9bgh6xw7jnrr2qmlaq6bflwn58wn1q"; depends=[]; }; -dse = derive { name="dse"; version="2014.11-1"; sha256="0fl1av8zd0csbsk6fplcxgqsb50qr1baasw2jrqv6h83j2xwph2l"; depends=[tfplot tframe setRNG]; }; -dslice = derive { name="dslice"; version="1.1.4"; sha256="0srqw1kznbjl1v6dpgh7vsrpf9k3zj7j55zw9k50jsbw2z4xqzfw"; depends=[Rcpp ggplot2 scales Rcpp]; }; -dsm = derive { name="dsm"; version="2.2.5"; sha256="0sfsfzcsqnvjkc5l7h5xq8p2jsgwxfzds75sqs58a0kzagcm1b05"; depends=[mgcv mrds nlme ggplot2 statmod]; }; +dse = derive { name="dse"; version="2014.11-1"; sha256="0fl1av8zd0csbsk6fplcxgqsb50qr1baasw2jrqv6h83j2xwph2l"; depends=[setRNG tfplot tframe]; }; +dslice = derive { name="dslice"; version="1.1.4"; sha256="0srqw1kznbjl1v6dpgh7vsrpf9k3zj7j55zw9k50jsbw2z4xqzfw"; depends=[ggplot2 Rcpp scales]; }; +dsm = derive { name="dsm"; version="2.2.5"; sha256="0sfsfzcsqnvjkc5l7h5xq8p2jsgwxfzds75sqs58a0kzagcm1b05"; depends=[ggplot2 mgcv mrds nlme statmod]; }; dst = derive { name="dst"; version="0.3"; sha256="1gdf4sjk2svywx2m6z22d383xppsm6dm108w93pcwfs8fpcdwxb9"; depends=[]; }; -dti = derive { name="dti"; version="1.2-0.1"; sha256="09ad7mwa53dk1jlddkql3wm1s2diyqij7prd5klh59j21kvkf0hy"; depends=[awsMethods adimpro rgl oro_nifti oro_dicom gsl quadprog]; }; +dti = derive { name="dti"; version="1.2-0.1"; sha256="09ad7mwa53dk1jlddkql3wm1s2diyqij7prd5klh59j21kvkf0hy"; depends=[adimpro awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; dtt = derive { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dtw = derive { name="dtw"; version="1.17-1"; sha256="0kbf38a14k112vdi7yaql18w0sj694smlm6pmdw5q4sqpk7azhqg"; depends=[proxy]; }; -dualScale = derive { name="dualScale"; version="0.9.1"; sha256="11hqxprai0s5id6wk4n2q174r1sqx9fzw3fscvqd2cgw8cjn1iwl"; depends=[matrixcalc ff vcd lattice Matrix]; }; +dualScale = derive { name="dualScale"; version="0.9.1"; sha256="11hqxprai0s5id6wk4n2q174r1sqx9fzw3fscvqd2cgw8cjn1iwl"; depends=[ff lattice Matrix matrixcalc vcd]; }; dummies = derive { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; dummy = derive { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; dunn_test = derive { name="dunn.test"; version="1.2.4"; sha256="01z9rxhp9mli9b21in9gvrjiyxlkx5imspfangg2qvkyrb8jl9i5"; depends=[]; }; dupiR = derive { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; }; dvfBm = derive { name="dvfBm"; version="1.0"; sha256="0gx11dxkbnh759ysd1lxdarlddgr3l5gwd5b0klwvwsgck6jv529"; depends=[wmtsa]; }; dvn = derive { name="dvn"; version="0.3.3"; sha256="14ncna67qgknh20xdvxqddjhagj61niwpvz4ava9k0z68rgzmk5h"; depends=[RCurl XML]; }; -dygraphs = derive { name="dygraphs"; version="0.4.3"; sha256="1pg23lsmjg46nlb17r4shmr6aal3c3pqzkcznfadcc6cgm0afqp2"; depends=[magrittr htmlwidgets zoo xts]; }; +dygraphs = derive { name="dygraphs"; version="0.4.5"; sha256="08bc41d0f8adfnhv668p9sk4507i63xlfs3yswig1g7c0cnyaba9"; depends=[htmlwidgets magrittr xts zoo]; }; dyn = derive { name="dyn"; version="0.2-9"; sha256="16zd32567aj0gqv9chbcdgi6sj78pnnfy5k8si15v5pnfvkkwslp"; depends=[zoo]; }; dynBiplotGUI = derive { name="dynBiplotGUI"; version="1.1.3"; sha256="1wgxxn0nlmza7npvjbkfq6nmp30n719yqrav6jzxcp00dk3ymg6g"; depends=[tcltk2 tkrplot]; }; dynCorr = derive { name="dynCorr"; version="0.1-2"; sha256="0qzhhfhkwpq6mwg7y6sxpqvcj8klvivnfv69g7x3ycha1kw2xk3w"; depends=[lpridge]; }; -dynRB = derive { name="dynRB"; version="0.1"; sha256="16klhc3lrz9jnpd2br4niqsxzcbqri5y8qr2pr1fnqm64dvhnc8x"; depends=[]; }; +dynRB = derive { name="dynRB"; version="0.2"; sha256="00xpigx1bxjm03fz7x19wws7vqyaa6mgfp3zdb8f0mvw3hjkrvr0"; depends=[]; }; dynaTree = derive { name="dynaTree"; version="1.2-7"; sha256="06pw78j6wwx7yc175bns1m2p5kg5400vg8x14v4hbrz3ydagx4dn"; depends=[]; }; dynamicGraph = derive { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive { name="dynamicTreeCut"; version="1.62"; sha256="1y11gg6k32wpsyb10kdv176ivczx2jlizs1xsrjrs6iwbncwzrkp"; depends=[]; }; -dynatopmodel = derive { name="dynatopmodel"; version="1.0"; sha256="1dq18wqbf7y597mbqv8fwwc5fm8l618mkqvb2l95bplq7n508hng"; depends=[raster xts shape fields rgeos maptools rgdal sp spam hydroGOF topmodel intervals]; }; +dynatopmodel = derive { name="dynatopmodel"; version="1.0"; sha256="1dq18wqbf7y597mbqv8fwwc5fm8l618mkqvb2l95bplq7n508hng"; depends=[fields hydroGOF intervals maptools raster rgdal rgeos shape sp spam topmodel xts]; }; dynia = derive { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; }; -dynlm = derive { name="dynlm"; version="0.3-3"; sha256="0ym23gv2vkvvnxvzk5kh6xy4gb5wbnpdbgkb5s6zx24lh81whvcs"; depends=[zoo car lmtest]; }; +dynlm = derive { name="dynlm"; version="0.3-3"; sha256="0ym23gv2vkvvnxvzk5kh6xy4gb5wbnpdbgkb5s6zx24lh81whvcs"; depends=[car lmtest zoo]; }; dynsim = derive { name="dynsim"; version="1.0"; sha256="0w4brs8kcps6gkamkic57nj61iz7zdxq972jwzs17i43wfcrw32c"; depends=[ggplot2 gridExtra MASS]; }; -dynsurv = derive { name="dynsurv"; version="0.2-2"; sha256="0418r7adki48pg3h7i1mgv3xpbryi520va3jpd03dx15zrq8zaqg"; depends=[survival reshape plyr nleqslv ggplot2 BH]; }; +dynsurv = derive { name="dynsurv"; version="0.2-2"; sha256="0418r7adki48pg3h7i1mgv3xpbryi520va3jpd03dx15zrq8zaqg"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; e1071 = derive { name="e1071"; version="1.6-4"; sha256="0hakqawy8bz4hvjzz9dbc2pbqhaf1qjsgl0agz3qfg63974whw2i"; depends=[class]; }; -eHOF = derive { name="eHOF"; version="1.5.8"; sha256="19zs0krz13m7rbiw72clnhh1rbb6qgzp85ndchqbparw7f9yji1s"; depends=[mgcv lattice]; }; -eRm = derive { name="eRm"; version="0.15-5"; sha256="0g4avcr709brvzcbmqmq35c7zvgx1hkf5nq6djsprzkgvh6rznjn"; depends=[MASS Matrix lattice]; }; +eHOF = derive { name="eHOF"; version="1.5.8"; sha256="19zs0krz13m7rbiw72clnhh1rbb6qgzp85ndchqbparw7f9yji1s"; depends=[lattice mgcv]; }; +eRm = derive { name="eRm"; version="0.15-5"; sha256="0g4avcr709brvzcbmqmq35c7zvgx1hkf5nq6djsprzkgvh6rznjn"; depends=[lattice MASS Matrix]; }; eVenn = derive { name="eVenn"; version="2.2"; sha256="0k6m61z902spxxrc38504l73h022w5v74g39h4azd1ibr35yrl7j"; depends=[]; }; eaf = derive { name="eaf"; version="1.07"; sha256="0310lrqfm1l0lifak7wa6xn21bzzn27kbrrx0bidj4hibwv7sa4l"; depends=[modeltools]; }; -earlywarnings = derive { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[ggplot2 moments tgp tseries fields nortest quadprog Kendall KernSmooth lmtest som spam]; }; -earth = derive { name="earth"; version="4.3.0"; sha256="1i52gm0ib1n6ffamb29np88b665l8vdigv482kvzh545kxc1z0jh"; depends=[plotmo]; }; +earlywarnings = derive { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; +earth = derive { name="earth"; version="4.4.0"; sha256="1dsqyp93z8a2afvnhms4453cmhn7zbqf5fy18sl43gn616miarpv"; depends=[plotmo TeachingDemos]; }; easyanova = derive { name="easyanova"; version="4.0"; sha256="1d8fkgyqzphipvla7x8ipcf0by07iqx8xran15d2q82yq9iik5g9"; depends=[car nlme]; }; easynls = derive { name="easynls"; version="4.0"; sha256="1j2crqvgsf84bpwzf4qh5xkzn5mhxhfx9c0y3p8dbyn8bg7zc2rf"; depends=[]; }; ebGenotyping = derive { name="ebGenotyping"; version="1.0"; sha256="07dpvxl9xspkzvzkywclg8whgcw7vyakls38pshfypjpyd6iv8ga"; depends=[]; }; @@ -3233,41 +3310,41 @@ ebSNP = derive { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfv eba = derive { name="eba"; version="1.7-1"; sha256="0kxdhl7bc4f570m9rbxxzg748zvq0q7a0slvfr4w1f45vfzhyh17"; depends=[nlme]; }; ebal = derive { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; }; ebdbNet = derive { name="ebdbNet"; version="1.2.3"; sha256="123iqp8rnm3pac5fvpzq5sqbf8nyfpf05g23nawanid6yv23ba9a"; depends=[igraph]; }; -ecespa = derive { name="ecespa"; version="1.1-7"; sha256="0ynyphc1jnk088041i0yk22bh4ga1v9xwrcghy70q1ipv0z279ph"; depends=[splancs spatstat]; }; +ecespa = derive { name="ecespa"; version="1.1-7"; sha256="0ynyphc1jnk088041i0yk22bh4ga1v9xwrcghy70q1ipv0z279ph"; depends=[spatstat splancs]; }; ecipex = derive { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; }; eco = derive { name="eco"; version="3.1-7"; sha256="0qrl1mq0nc42j4dzqhayzzb56gmkk479wgpxikzgzpj9wv78yd5s"; depends=[MASS]; }; ecodist = derive { name="ecodist"; version="1.2.9"; sha256="199f3lwwm8r2bnik595m540la1p4z6vbkwfqh9kimy9d0fjp8nps"; depends=[]; }; -ecoengine = derive { name="ecoengine"; version="1.9.1"; sha256="0y1f8ylyk9jny48z5grf4r9jcdin6clhy0vg1wkg3alsqn4iiqlg"; depends=[httr plyr assertthat whisker dplyr jsonlite lubridate leafletR]; }; -ecolMod = derive { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[rootSolve shape diagram deSolve]; }; +ecoengine = derive { name="ecoengine"; version="1.9.1"; sha256="0y1f8ylyk9jny48z5grf4r9jcdin6clhy0vg1wkg3alsqn4iiqlg"; depends=[assertthat dplyr httr jsonlite leafletR lubridate plyr whisker]; }; +ecolMod = derive { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecoreg = derive { name="ecoreg"; version="0.2"; sha256="08iw7w9z7zqwhvirnhdc2jr2qjp9yma8ddc831d5dvbvi2j7kq84"; depends=[]; }; ecoretriever = derive { name="ecoretriever"; version="0.1"; sha256="1iwds81pyn9c04fmnjfsri7rjanrfki8hngdwpqcx3dkbsg76ii6"; depends=[]; }; ecosim = derive { name="ecosim"; version="1.2"; sha256="1lzjd6kl2864ngyiqyfnnra5ag9bj42pxb793gwp45r7z95k32rf"; depends=[deSolve stoichcalc]; }; -ecospat = derive { name="ecospat"; version="1.1"; sha256="070vvx00gm36rwjz2g188jn7bkljs1c7j6ap6ssrl3ihzqvc1zdz"; depends=[ade4 ape gam gbm sp adehabitatHR adehabitatMA biomod2 dismo ecodist maptools randomForest spatstat raster rms]; }; -ecoval = derive { name="ecoval"; version="1.0"; sha256="1szvr2ipb7bd0cyslhwwwyx5kw7yx3kpqcyzxfd9pk263bny323g"; depends=[utility rivernet]; }; -ecp = derive { name="ecp"; version="1.6.2"; sha256="0j416ns93m7vrb7dnyr4prqm213cg19hbgffvscnb67y3qwj6lic"; depends=[Rcpp Rcpp]; }; +ecospat = derive { name="ecospat"; version="1.1"; sha256="070vvx00gm36rwjz2g188jn7bkljs1c7j6ap6ssrl3ihzqvc1zdz"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 dismo ecodist gam gbm maptools randomForest raster rms sp spatstat]; }; +ecoval = derive { name="ecoval"; version="1.0"; sha256="1szvr2ipb7bd0cyslhwwwyx5kw7yx3kpqcyzxfd9pk263bny323g"; depends=[rivernet utility]; }; +ecp = derive { name="ecp"; version="2.0.0"; sha256="0cr3rzvd4bahg5idd857mgp005n075xql5kvjw0smsjbjh4p84wq"; depends=[Rcpp]; }; edcc = derive { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; edeR = derive { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; -edgeRun = derive { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table]; }; -editrules = derive { name="editrules"; version="2.7.2"; sha256="19g07caacwphvrqn900chrz3k6x4z8gmvlcvna5x2mqidcjkf25i"; depends=[igraph lpSolveAPI]; }; -edrGraphicalTools = derive { name="edrGraphicalTools"; version="2.1"; sha256="09y63xj3gqrz66mym20g4pmfwrb0wnc2n67692hnqq8dz31q7p3i"; depends=[rgl mvtnorm MASS lasso2]; }; -eegAnalysis = derive { name="eegAnalysis"; version="0.0"; sha256="1lrwjbhm5fnf5fhyyga2b21j2snnmj3zfvfxfkvgsbdnzr3qxaxb"; depends=[e1071 wmtsa fields splus2R]; }; +edgeRun = derive { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table edgeR]; }; +editrules = derive { name="editrules"; version="2.9.0"; sha256="14mfa8flkym2rx9n7bq9icc9fsrk3szib3amx5l0008rxll9qnxm"; depends=[igraph lpSolveAPI]; }; +edrGraphicalTools = derive { name="edrGraphicalTools"; version="2.1"; sha256="09y63xj3gqrz66mym20g4pmfwrb0wnc2n67692hnqq8dz31q7p3i"; depends=[lasso2 MASS mvtnorm rgl]; }; +eegAnalysis = derive { name="eegAnalysis"; version="0.0"; sha256="1lrwjbhm5fnf5fhyyga2b21j2snnmj3zfvfxfkvgsbdnzr3qxaxb"; depends=[e1071 fields splus2R wmtsa]; }; eegkit = derive { name="eegkit"; version="1.0-2"; sha256="10dksmc5lrl0ypifvmmv96xnndl2zx191sl79qif0gfs3wq3w4s0"; depends=[bigsplines eegkitdata ica rgl]; }; eegkitdata = derive { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; }; -eeptools = derive { name="eeptools"; version="0.3.1"; sha256="0m6i0hiw565wgziknlf19rh2fq8zvzq2v5a0ppnwcv8vhbhyph3g"; depends=[ggplot2 MASS stringr maptools arm data_table memisc]; }; -effects = derive { name="effects"; version="3.0-3"; sha256="10v99rv18jl10q0zhd4rvkx7dgab3b8w46jv1npqk9lx172iaf1y"; depends=[pbkrtest lme4 nnet lattice colorspace]; }; +eeptools = derive { name="eeptools"; version="0.3.1"; sha256="0m6i0hiw565wgziknlf19rh2fq8zvzq2v5a0ppnwcv8vhbhyph3g"; depends=[arm data_table ggplot2 maptools MASS memisc stringr]; }; +effects = derive { name="effects"; version="3.0-4"; sha256="0ypw49gighmg2azc2872y8r9rx9v3x0r2gsidgkwqlaqg95vfcd7"; depends=[colorspace lattice lme4 nnet]; }; effsize = derive { name="effsize"; version="0.5.4"; sha256="1dc90avbnb83nrm70wh0h45g3c6dcg8zh2ynklc2x86cqk7b264b"; depends=[]; }; ega = derive { name="ega"; version="1.0.1"; sha256="02mbadv505jz6nk1yp9xl12c9l9wnwpl5bajfbhgs837pdca438g"; depends=[ggplot2]; }; -egcm = derive { name="egcm"; version="1.0.6"; sha256="1j499f94ibr9rx544mwbpwjrwhzbdlvv1p156kj8pfnd7qin26xl"; depends=[zoo xts TTR ggplot2 tseries MASS urca fArma]; }; +egcm = derive { name="egcm"; version="1.0.6"; sha256="1j499f94ibr9rx544mwbpwjrwhzbdlvv1p156kj8pfnd7qin26xl"; depends=[fArma ggplot2 MASS tseries TTR urca xts zoo]; }; eggCounts = derive { name="eggCounts"; version="0.4-1"; sha256="16prkcmpfjl1lab8m9hm0sfbdlh94ds3wi6ra9n2wnrpdn32fl20"; depends=[actuar boot coda]; }; egonet = derive { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; eha = derive { name="eha"; version="2.4-3"; sha256="1dfilgw9m4m78ny3fd89nl8f9c9y5z5bnj912hpbfff3v5yfm3iq"; depends=[survival]; }; -eiPack = derive { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[MASS coda msm]; }; +eiPack = derive { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; }; eigeninv = derive { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; }; eigenmodel = derive { name="eigenmodel"; version="1.01"; sha256="0p9n28x5gg46nszzd2z9ky5fhv6qa070673i1df6bhjh962aqgaf"; depends=[]; }; eigenprcomp = derive { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; }; -eive = derive { name="eive"; version="2.1"; sha256="1vazl5dnrvljd07csy9rjs4302w09h94i411gffg9fvxn70km7qg"; depends=[Rcpp Rcpp]; }; -eiwild = derive { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[gtools coda lattice]; }; -elastic = derive { name="elastic"; version="0.4.0"; sha256="03cj0vljad4bkz7zmlp7cr6y734pddngmlzwa1h4ja1nr8nv8xf4"; depends=[httr RCurl jsonlite]; }; +eive = derive { name="eive"; version="2.1"; sha256="1vazl5dnrvljd07csy9rjs4302w09h94i411gffg9fvxn70km7qg"; depends=[Rcpp]; }; +eiwild = derive { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; }; +elastic = derive { name="elastic"; version="0.4.0"; sha256="03cj0vljad4bkz7zmlp7cr6y734pddngmlzwa1h4ja1nr8nv8xf4"; depends=[httr jsonlite RCurl]; }; elasticnet = derive { name="elasticnet"; version="1.1"; sha256="1x8rwqb275lz86vi044m1fy8xanmvs7f7irr1vczps1w45nsmqr2"; depends=[lars]; }; elec = derive { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; }; elec_strat = derive { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; @@ -3276,81 +3353,81 @@ ellipse = derive { name="ellipse"; version="0.3-8"; sha256="0ibz1qvf1qbb5sigyhpx elliptic = derive { name="elliptic"; version="1.3-5"; sha256="0hi0r3z6f5yq53v6ii4z35nws2gc00xkk0dncll0sf5nshcj8fl5"; depends=[MASS]; }; elmNN = derive { name="elmNN"; version="1.0"; sha256="129r6d3qa48gqvqxks53hdmyk3jjakddsj5fwj91kqq0hkm34kyd"; depends=[MASS]; }; elrm = derive { name="elrm"; version="1.2.2"; sha256="0wz0l703v0iyp7nswdmh65n0cy3a7rfvyxd795a6nzk3nich8bfg"; depends=[coda]; }; -emIRT = derive { name="emIRT"; version="0.0.5"; sha256="0n94iqdzbml0hx3gd046958vmv3y0hymj5kly53gvvlcidsn15c4"; depends=[pscl Rcpp Rcpp RcppArmadillo]; }; -embryogrowth = derive { name="embryogrowth"; version="6.0"; sha256="0l08imqagn2w1q8s4f84bb1zlc17zjkfc5qz1gpmqc7dbw9nvxph"; depends=[deSolve HelpersMG coda polynom]; }; +emIRT = derive { name="emIRT"; version="0.0.5"; sha256="0n94iqdzbml0hx3gd046958vmv3y0hymj5kly53gvvlcidsn15c4"; depends=[pscl Rcpp RcppArmadillo]; }; +embryogrowth = derive { name="embryogrowth"; version="6.0"; sha256="0l08imqagn2w1q8s4f84bb1zlc17zjkfc5qz1gpmqc7dbw9nvxph"; depends=[coda deSolve HelpersMG polynom]; }; emdatr = derive { name="emdatr"; version="0.3"; sha256="1ccm45al90wa467n19dqs33q2w74in4qnwdrsh94g3d67cw5fsfc"; depends=[RCurl]; }; -emdbook = derive { name="emdbook"; version="1.3.8"; sha256="10qmppacfww8wg1hhd9fpadrvrivrvfgfn1qgm87xlf3a8jpffjj"; depends=[MASS lattice plyr rgl coda bbmle]; }; +emdbook = derive { name="emdbook"; version="1.3.8"; sha256="10qmppacfww8wg1hhd9fpadrvrivrvfgfn1qgm87xlf3a8jpffjj"; depends=[bbmle coda lattice MASS plyr rgl]; }; emdist = derive { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; emg = derive { name="emg"; version="1.0.6"; sha256="1kzmxs224m6scmk8gg5ckx5c7is99hwgwv28yl26hnrbkm59skyh"; depends=[]; }; -emil = derive { name="emil"; version="1.1-6"; sha256="1qk655swpl8f492y9smzlfxf7aysbwashfs6whnsi7f9dbigw6cd"; depends=[]; }; -emma = derive { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[earth clusterSim]; }; +emil = derive { name="emil"; version="2.0.2"; sha256="16fkf5ns6pw0nrpysr1yy5hwwg59mkfa84skajchfvq75aw6hwbi"; depends=[data_table dplyr ggplot2 lazyeval magrittr tidyr]; }; +emma = derive { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; emoa = derive { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; }; emov = derive { name="emov"; version="0.1"; sha256="1jzssxk7c26ylfb70p9s631bz63fgvrqc105p7536n0kgxy21f7b"; depends=[]; }; -empiricalFDR_DESeq2 = derive { name="empiricalFDR.DESeq2"; version="1.0.1"; sha256="12w3ald2ngaj01rm98k445ai3xl3ggr58y27mfxzlsg697yrx83c"; depends=[]; }; +empiricalFDR_DESeq2 = derive { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; }; emplik = derive { name="emplik"; version="1.0-1"; sha256="1kwgikdnxh52wsmzrzqv7sp8s55w9q40aq9kpfd3zshkflx7w8g1"; depends=[quantreg]; }; emplik2 = derive { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; }; emulator = derive { name="emulator"; version="1.2-15"; sha256="1rp7q7zs8b49jzdkbzm4s1g8554h41hcabf4d78k9jhhys2z28g2"; depends=[mvtnorm]; }; enRich = derive { name="enRich"; version="2.0"; sha256="13ahwdifm33h4h5mvmc49v39fbhiy291rbdwm4c8kxjrqjq9ip66"; depends=[]; }; -enaR = derive { name="enaR"; version="2.8.1"; sha256="1p2vhqd1zxwar5fb16ibvwrzrxl7c574ls6747bkdjzlx7vznrn1"; depends=[MASS stringr sna network gdata]; }; +enaR = derive { name="enaR"; version="2.8.1"; sha256="1p2vhqd1zxwar5fb16ibvwrzrxl7c574ls6747bkdjzlx7vznrn1"; depends=[gdata MASS network sna stringr]; }; endogMNP = derive { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; }; endorse = derive { name="endorse"; version="1.4.1"; sha256="0xyi2cq4k4xa8kr717i4njl6rgjf5z99056jbhp2rbzfyy4sw61d"; depends=[coda]; }; energy = derive { name="energy"; version="1.6.2"; sha256="008yf4r6546mzk9q515zliqxyjx6w0z19g5wlarg7f4lrzsmqiaw"; depends=[boot]; }; english = derive { name="english"; version="1.0-1"; sha256="1413axjp2icj9wwnkz3vl4gvrwlgmjpc2djzv5bllbnc4a4dgj24"; depends=[]; }; enigma = derive { name="enigma"; version="0.1.1"; sha256="1309w9nwh7kd1iivj5kq6sgi10k9ac69n3yl6a52ajqnm9rsg3lm"; depends=[httr jsonlite plyr]; }; -enpls = derive { name="enpls"; version="1.0"; sha256="1grnabrb0kzjvjvwp9rx1xqfljla0jd5xrkcbwfzmy2ymmbvh6ma"; depends=[pls foreach doParallel]; }; +enpls = derive { name="enpls"; version="1.0"; sha256="1grnabrb0kzjvjvwp9rx1xqfljla0jd5xrkcbwfzmy2ymmbvh6ma"; depends=[doParallel foreach pls]; }; enrichvs = derive { name="enrichvs"; version="0.0.5"; sha256="0x91s03hz1yprddm6mqi75bm45ki3yapfrxmap7d4qc0hi06h22k"; depends=[]; }; -ensembleBMA = derive { name="ensembleBMA"; version="5.1.1"; sha256="1apzfapzycpjhdn4f2cj77rifc9xrxshq35b1j53rb6qqns7ydyz"; depends=[chron]; }; -ensembleMOS = derive { name="ensembleMOS"; version="0.7"; sha256="0g5qzdic5jvgn6wv7zh0jnz8malfgfxn26l7lg30y96vcmi4hk54"; depends=[ensembleBMA chron]; }; +ensembleBMA = derive { name="ensembleBMA"; version="5.1.2"; sha256="0cfasrs1paz60na8by9zk0c5jc48l9djvn6c64ygjl1rapz389d4"; depends=[chron]; }; +ensembleMOS = derive { name="ensembleMOS"; version="0.7"; sha256="0g5qzdic5jvgn6wv7zh0jnz8malfgfxn26l7lg30y96vcmi4hk54"; depends=[chron ensembleBMA]; }; ensurer = derive { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; entropart = derive { name="entropart"; version="1.2.1"; sha256="14cn0zkfk6w8qrbzis9nxhs0vmhpxn4ksa95j5zxr7lxn77piznz"; depends=[ade4]; }; entropy = derive { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; -enviPat = derive { name="enviPat"; version="1.9"; sha256="0xm23gv4ixmsal9rf0cbq0lwvlpagpmapskz3c4d8qzvhr8qrl3b"; depends=[]; }; -enviPick = derive { name="enviPick"; version="1.3"; sha256="01wkijvhr8wqjzrhgkvxbnnmb9qsnq0lhkgw93s8nrf8yr3z3awj"; depends=[shiny readMzXmlData]; }; +enviPat = derive { name="enviPat"; version="2.0"; sha256="10fzzwlcmrfcppsj06pma8jkp5pfrb2ys70ggb9q4frc5irg5lha"; depends=[]; }; +enviPick = derive { name="enviPick"; version="1.3"; sha256="01wkijvhr8wqjzrhgkvxbnnmb9qsnq0lhkgw93s8nrf8yr3z3awj"; depends=[readMzXmlData shiny]; }; epade = derive { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epi2loc = derive { name="epi2loc"; version="1.0-1"; sha256="16abk1v177sg7gmaw42ldf6hf20l7dvyq295zwbq76nxj467khdv"; depends=[pwr]; }; epiR = derive { name="epiR"; version="0.9-62"; sha256="04r0inaa04pc4nj5dippl2qxa4nysk0sabdgp4bzp5zxw33mf55v"; depends=[survival]; }; epibasix = derive { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; }; -epicalc = derive { name="epicalc"; version="2.15.1.0"; sha256="11x9q990hc7rf5xfvba47axdy7vld76xcf3kd9lkr0c8nbl5ss9v"; depends=[foreign survival MASS nnet]; }; epinet = derive { name="epinet"; version="2.0.9"; sha256="071svl1zcjjb3gvk3vg8xf660bvlz0ypkxy88n3d3f3ir2k26s7b"; depends=[]; }; -episensr = derive { name="episensr"; version="0.6.0"; sha256="005cxrwszgqar52zdrliwgg0p8j7rh2msvjd4s028z8ns334zwsb"; depends=[triangle trapezoid]; }; +episensr = derive { name="episensr"; version="0.6.0"; sha256="005cxrwszgqar52zdrliwgg0p8j7rh2msvjd4s028z8ns334zwsb"; depends=[trapezoid triangle]; }; episplineDensity = derive { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; epitools = derive { name="epitools"; version="0.5-7"; sha256="163sibnbihdsnkxf313fr8n8rh5d64dwjagv95vhhzr87f21sw22"; depends=[]; }; -epoc = derive { name="epoc"; version="0.2.5-1"; sha256="1r19cvcqf39yf09n3znbdy3dsr7z96yx6zib6031mqqdsxaav5qd"; depends=[lassoshooting Matrix irr elasticnet survival]; }; +epoc = derive { name="epoc"; version="0.2.5-1"; sha256="1r19cvcqf39yf09n3znbdy3dsr7z96yx6zib6031mqqdsxaav5qd"; depends=[elasticnet graph irr lassoshooting Matrix Rgraphviz survival]; }; epr = derive { name="epr"; version="2.0"; sha256="1xqc0jhgdwwvilqpljxzpzz3wx30kigy09sxvzcfvsjmxyyvflqy"; depends=[car]; }; eqs2lavaan = derive { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; equate = derive { name="equate"; version="2.0-3"; sha256="0y37nxily7zjx00z7h4vmpn8cs7bl3aravhjkjz9l6y0fv0rc5vv"; depends=[]; }; equateIRT = derive { name="equateIRT"; version="1.2"; sha256="07qh5awa12d1bcm504k0rpgyxyzhymg92131cl676kdlfp49aqk1"; depends=[statmod]; }; -equivalence = derive { name="equivalence"; version="0.6.0"; sha256="1q17c2bs36f46bmm6wzmp0g2lg7d0j9mlrfnkzxnlvmspwksc0zl"; depends=[lattice boot PairedData]; }; +equivalence = derive { name="equivalence"; version="0.6.0"; sha256="1q17c2bs36f46bmm6wzmp0g2lg7d0j9mlrfnkzxnlvmspwksc0zl"; depends=[boot lattice PairedData]; }; erboost = derive { name="erboost"; version="1.2"; sha256="0afgh0zkl3h3ab4s7wl0cn24qdyhszssai9i390mi7w0p88wgba9"; depends=[lattice]; }; -erer = derive { name="erer"; version="2.3"; sha256="165hngfzbzn403gwdcjkhvlm7jygl57nbpwdmlya2rd43z09kp77"; depends=[lmtest systemfit tseries urca ggplot2]; }; -ergm = derive { name="ergm"; version="3.2.4"; sha256="004d3wrv271i0czqkp7abz9lba8g68z350b21f94ad0xfp0cwlp2"; depends=[statnet_common network robustbase coda trust Matrix Rglpk]; }; -ergm_count = derive { name="ergm.count"; version="3.1.1"; sha256="0l66shy5p7h9j3h5gpkn48ps069mdaqbscnnkvmwjfvcc7k5vr8m"; depends=[statnet_common ergm network ergm]; }; -ergm_graphlets = derive { name="ergm.graphlets"; version="1.0.2"; sha256="1wfk8kh4rqw1f7dg4vsjq8nirgwyyk21r0x7x2hrd4v4ci0mcz6j"; depends=[statnet ergm]; }; -ergm_userterms = derive { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[network ergm statnet_common ergm]; }; +erer = derive { name="erer"; version="2.3"; sha256="165hngfzbzn403gwdcjkhvlm7jygl57nbpwdmlya2rd43z09kp77"; depends=[ggplot2 lmtest systemfit tseries urca]; }; +ergm = derive { name="ergm"; version="3.4.0"; sha256="1qyj4b22d998qky0rv1h9h0r33vdwr7lw7gpkvbgzf5d44yng33b"; depends=[coda lpSolve Matrix network robustbase statnet_common trust]; }; +ergm_count = derive { name="ergm.count"; version="3.1.1"; sha256="0l66shy5p7h9j3h5gpkn48ps069mdaqbscnnkvmwjfvcc7k5vr8m"; depends=[ergm network statnet_common]; }; +ergm_graphlets = derive { name="ergm.graphlets"; version="1.0.3"; sha256="0xk45ialjckvjs96k19skk7imilcahgyzfwc74h6yand5q3mg6fz"; depends=[ergm network statnet_common]; }; +ergm_userterms = derive { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[ergm network statnet_common]; }; ergmharris = derive { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; erpR = derive { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; -esaBcv = derive { name="esaBcv"; version="1.1.1"; sha256="0bsdxd0spfpzkaxyv1qh5n3x31qr75wgb1lizifl5j9mfi4ks7h1"; depends=[corpcor svd]; }; +esaBcv = derive { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esotericR = derive { name="esotericR"; version="1.0"; sha256="0kl9c2z2mpg3mk8jnl0ssgcf6y0i9jpczms746j8f07ydrcxpf41"; depends=[]; }; estimability = derive { name="estimability"; version="1.1"; sha256="1inw2ir83bzz40gynwfcjzx7f6v99pqlphq7p3rmql01ikd2b6r9"; depends=[]; }; estout = derive { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; -etable = derive { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[xtable Hmisc]; }; -etasFLP = derive { name="etasFLP"; version="1.2.1"; sha256="1jkkpzvnkf3n3jalqj90brk5n4r4znc521kgx13n45y9j8b6ni50"; depends=[mapdata rgl fields maps]; }; -etm = derive { name="etm"; version="0.6-2"; sha256="0sdsm6h502bkrxc9admshkrkqjczivh3av55sha7542pr6nhl085"; depends=[survival lattice]; }; -eulerian = derive { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[]; }; +etable = derive { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; }; +etasFLP = derive { name="etasFLP"; version="1.3.0"; sha256="1qh8s9ikd2lpchpp4h9z4zvcd9l2gi15dg0i54nxg9acn92yn3hi"; depends=[fields mapdata maps rgl]; }; +etm = derive { name="etm"; version="0.6-2"; sha256="0sdsm6h502bkrxc9admshkrkqjczivh3av55sha7542pr6nhl085"; depends=[lattice survival]; }; +eulerian = derive { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; eurostat = derive { name="eurostat"; version="1.0.16"; sha256="017ri3vvlp60r9h5b0y4j2adggkrkjbapkjynpl0vg92islspqkz"; depends=[plyr tidyr]; }; evaluate = derive { name="evaluate"; version="0.7"; sha256="0sh58pysabz1iinl8gp0f2v03fwzawpagbk18jbsnfr2vvc927bk"; depends=[stringr]; }; evd = derive { name="evd"; version="2.3-0"; sha256="1h3dkssgw2x7pblvknfr0l8k7q25nikxyl7kl9x95ganjpi2452v"; depends=[]; }; evdbayes = derive { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; }; eventInterval = derive { name="eventInterval"; version="1.2"; sha256="15g934n7flkl1g5q8qhxv60iakx8i9ndpx88yiqqr3n38hcnifrs"; depends=[MASS]; }; events = derive { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; }; -eventstudies = derive { name="eventstudies"; version="1.1"; sha256="13l2yhmlpiid9r3njnmvja231l00ym7gvwfbv0m9fk2k5j6gm5id"; depends=[zoo xts boot]; }; +eventstudies = derive { name="eventstudies"; version="1.1"; sha256="13l2yhmlpiid9r3njnmvja231l00ym7gvwfbv0m9fk2k5j6gm5id"; depends=[boot xts zoo]; }; evir = derive { name="evir"; version="1.7-3"; sha256="1kn139vvzdrx5r9jayjb4b0803b0bbppxk68z00gdb50mxgvi593"; depends=[]; }; -evmix = derive { name="evmix"; version="2.5"; sha256="0v1raxxxj0qhampaia2q00asprl7ra7vk3s7vvcfpzmg4476vm50"; depends=[MASS gsl SparseM]; }; -evobiR = derive { name="evobiR"; version="1.0"; sha256="12j01qzc4yrjpxbj39bl29f5ypxwk33c6qf0mjjbgpwn5g6fgsi4"; depends=[seqinr ape stringr geiger taxize]; }; -evolvability = derive { name="evolvability"; version="1.0"; sha256="17vkmb5208q4lx6jslx96nbhsl9m2c4ra6264bparbgrg34byg9x"; depends=[coda]; }; -evora = derive { name="evora"; version="1.0"; sha256="0blq28ldynbq3v6rh0yk89wy1sjp4621h6iwnyyiipqwzihwrhz2"; depends=[Hmisc]; }; +evmix = derive { name="evmix"; version="2.6"; sha256="1rc52mqmzl05n5n1lr990czqgpq9h2x8shnv6s7hvr8896kjasjm"; depends=[gsl MASS SparseM]; }; +evobiR = derive { name="evobiR"; version="1.0"; sha256="12j01qzc4yrjpxbj39bl29f5ypxwk33c6qf0mjjbgpwn5g6fgsi4"; depends=[ape geiger seqinr stringr taxize]; }; +evolqg = derive { name="evolqg"; version="0.1-5"; sha256="1s9jh14ycymlajc285cczr9m529vv6la4bkv0lgk3dc0557m7q5w"; depends=[ape ggplot2 magrittr mvtnorm phytools plyr Rcpp reshape2 tidyr vegan]; }; +evolvability = derive { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; }; +evora = derive { name="evora"; version="1.0"; sha256="0blq28ldynbq3v6rh0yk89wy1sjp4621h6iwnyyiipqwzihwrhz2"; depends=[Hmisc qvalue]; }; evt0 = derive { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; evtree = derive { name="evtree"; version="1.0-0"; sha256="0i37lkdfzvgby98888ndd5wzxs7y11sxf9mh6pqpqgwif05p4z3i"; depends=[partykit]; }; exCon = derive { name="exCon"; version="0.1.5"; sha256="08gq257qp814960ykp16qdk9xpc7ag9mxs1qhnnzlk1v2cnhilaq"; depends=[jsonlite]; }; @@ -3361,104 +3438,105 @@ exactci = derive { name="exactci"; version="1.3-0"; sha256="03mhgpyrgm3cb0hw908w exactmeta = derive { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; exams = derive { name="exams"; version="2.0-2"; sha256="1cv01wa3zs31zdc1qk6rsnimbs6m31r0j56syg6yjicfxiwxxm0v"; depends=[]; }; excursions = derive { name="excursions"; version="2.0.16"; sha256="10z0mix7fx4pb9jpix5d00ch4i6jlvj2337s6ja916q6cczj21qr"; depends=[Matrix sp spam]; }; -expands = derive { name="expands"; version="1.5"; sha256="14m5fzh302v0nchf875i4nwrr25wk7hych405psgfidq058pr985"; depends=[rJava flexmix matlab mclust moments ape permute]; }; -expectreg = derive { name="expectreg"; version="0.39"; sha256="1mxhv6phc3lgp0zz20wszx4nr3by9p6492wcb0x8wn8p8p1sy1b3"; depends=[mboost BayesX quadprog]; }; +expands = derive { name="expands"; version="1.5"; sha256="14m5fzh302v0nchf875i4nwrr25wk7hych405psgfidq058pr985"; depends=[ape flexmix matlab mclust moments permute rJava]; }; +expectreg = derive { name="expectreg"; version="0.39"; sha256="1mxhv6phc3lgp0zz20wszx4nr3by9p6492wcb0x8wn8p8p1sy1b3"; depends=[BayesX mboost quadprog]; }; experiment = derive { name="experiment"; version="1.1-1"; sha256="07yaf5k5fpymz2yvr52zbbi60g0v84qryvqqjq3sjq2mb1fjfz1p"; depends=[boot MASS]; }; expert = derive { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; }; expm = derive { name="expm"; version="0.99-1.1"; sha256="0kcanqaqn51f437fxriw4qkpxbhzpjzlkp95wn89ip4jhy6076qn"; depends=[Matrix]; }; expoRkit = derive { name="expoRkit"; version="0.9"; sha256="0raf0m2nfbdbd1pc4lincyp8y8lgn3bfi4hn0p04plc5p40l1gvc"; depends=[Matrix SparseM]; }; expoTree = derive { name="expoTree"; version="1.0.1"; sha256="0hj1x4niqp0ghqik3mz733nc3zpnhyknrdpzpj6y2rfia2ysdiz8"; depends=[ape deSolve]; }; -expp = derive { name="expp"; version="1.1"; sha256="13zbhkkcshqrpln5gsa051d390q9ij97lawsdbd5j7fj9hxm9pwh"; depends=[sp spdep rgeos deldir]; }; +expp = derive { name="expp"; version="1.1"; sha256="13zbhkkcshqrpln5gsa051d390q9ij97lawsdbd5j7fj9hxm9pwh"; depends=[deldir rgeos sp spdep]; }; expsmooth = derive { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; exptest = derive { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; -exsic = derive { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[stringr markdown]; }; -extRemes = derive { name="extRemes"; version="2.0-5"; sha256="1r1q26gb06db0nsd9m5r54sjhsdwbi3179ai4b71l849viragq4z"; depends=[Lmoments distillery car]; }; +exsic = derive { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; +extRemes = derive { name="extRemes"; version="2.0-5"; sha256="1r1q26gb06db0nsd9m5r54sjhsdwbi3179ai4b71l849viragq4z"; depends=[car distillery Lmoments]; }; extWeibQuant = derive { name="extWeibQuant"; version="1.1"; sha256="08dzw5xfgqx0c7ac632c5mg5jmjjw7wwpcr4c9lvz5rv72ykh2rh"; depends=[]; }; extfunnel = derive { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; extraBinomial = derive { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; }; extraTrees = derive { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; }; -extracat = derive { name="extracat"; version="1.7-1"; sha256="1vgxr9j812jjr0i188vv7c1l0d7b73aakvfgsm0agwv7vj8k0rhi"; depends=[colorspace hexbin scales ggplot2 reshape2 plyr TSP]; }; +extracat = derive { name="extracat"; version="1.7-1"; sha256="1vgxr9j812jjr0i188vv7c1l0d7b73aakvfgsm0agwv7vj8k0rhi"; depends=[colorspace ggplot2 hexbin plyr reshape2 scales TSP]; }; extrafont = derive { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extremevalues = derive { name="extremevalues"; version="2.3.0"; sha256="1nn67kgf3qd41nmizkbc2cy3128kajsxbxg03fhfgkjdqa0781lq"; depends=[gWidgets gWidgetstcltk]; }; eyetracking = derive { name="eyetracking"; version="1.1"; sha256="0ajas96s25hjp3yrg42hp78qjhl1aih04mjirkskx32qsyq5hfpv"; depends=[]; }; ez = derive { name="ez"; version="4.2-2"; sha256="1dk4ig137ridr4pw4afp3flm22s8l38yrgxabld1zv46slndc8mm"; depends=[car ggplot2 lme4 MASS Matrix mgcv plyr reshape2 scales stringr]; }; ezglm = derive { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; -ezsim = derive { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[foreach ggplot2 digest plyr reshape Jmisc]; }; +ezsim = derive { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[digest foreach ggplot2 Jmisc plyr reshape]; }; fANCOVA = derive { name="fANCOVA"; version="0.5-1"; sha256="034m2mmm6wmsjd41sg82m9ppqjf4b1kgw5vl2w7kzqfx0lypaiwv"; depends=[]; }; -fArma = derive { name="fArma"; version="3010.79"; sha256="1byxyy4afl1gq58r1cmc5p6frdr9rljr1x3pdnc8nj8rr65lkg72"; depends=[timeDate timeSeries fBasics]; }; -fAsianOptions = derive { name="fAsianOptions"; version="3010.79"; sha256="1w9ph3rz6cd7g275flzsnqxwd3r5xin6pkini8pbsi9s8hbqv3vl"; depends=[timeDate timeSeries fBasics fOptions]; }; -fAssets = derive { name="fAssets"; version="3011.83"; sha256="0i3phc8kxwhzf6010bv5k2ff5zlv7aqrwavqmhly4wwby73i39yl"; depends=[timeDate timeSeries fBasics fMultivar robustbase MASS sn ecodist mvnormtest energy]; }; -fBasics = derive { name="fBasics"; version="3011.87"; sha256="1x4jv4db0nr2fig6hglk0kv6j27ngkc8qzclgiklbl8wjfrrp9zh"; depends=[timeDate timeSeries gss stabledist MASS]; }; -fBonds = derive { name="fBonds"; version="3010.77"; sha256="00rc3i0iyqcpsqvc036csa1c8gxwcnniwj3l2irmcalx4p8650w0"; depends=[timeDate timeSeries fBasics]; }; -fCertificates = derive { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fOptions fExoticOptions]; }; -fCopulae = derive { name="fCopulae"; version="3011.81"; sha256="0r4g567icgiiz6cxi6ak3kzrav9qzsc6zvww5dj1pd8mkd4r1f0y"; depends=[timeDate timeSeries fBasics fMultivar]; }; -fExoticOptions = derive { name="fExoticOptions"; version="2152.78"; sha256="0h58prj8nh340b0fxxkgg4bk25yxvb4f8ppq677hr12x8sysf1a8"; depends=[timeDate timeSeries fBasics fOptions]; }; -fExpressCertificates = derive { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[mvtnorm tmvtnorm fCertificates Matrix]; }; -fExtremes = derive { name="fExtremes"; version="3010.81"; sha256="0bzgnn0wf7lqhj7b2dbbhi61s8fi2kmi87gg9hzqqi6p7krnz1n5"; depends=[timeDate timeSeries fBasics fGarch fTrading]; }; -fGarch = derive { name="fGarch"; version="3010.82"; sha256="08q452pasvjhsg2ks6c52lqg276hlbdwk0vh25xya2bw2bgbqy99"; depends=[timeDate timeSeries fBasics]; }; -fICA = derive { name="fICA"; version="1.0-2"; sha256="058kkhjksm0nrfaj0csi6dgzr83kq4cln04v9fja12cqvdij9k7k"; depends=[JADE Rcpp Rcpp RcppArmadillo]; }; +fArma = derive { name="fArma"; version="3010.79"; sha256="1byxyy4afl1gq58r1cmc5p6frdr9rljr1x3pdnc8nj8rr65lkg72"; depends=[fBasics timeDate timeSeries]; }; +fAsianOptions = derive { name="fAsianOptions"; version="3010.79"; sha256="1w9ph3rz6cd7g275flzsnqxwd3r5xin6pkini8pbsi9s8hbqv3vl"; depends=[fBasics fOptions timeDate timeSeries]; }; +fAssets = derive { name="fAssets"; version="3011.83"; sha256="0i3phc8kxwhzf6010bv5k2ff5zlv7aqrwavqmhly4wwby73i39yl"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; +fBasics = derive { name="fBasics"; version="3011.87"; sha256="1x4jv4db0nr2fig6hglk0kv6j27ngkc8qzclgiklbl8wjfrrp9zh"; depends=[gss MASS stabledist timeDate timeSeries]; }; +fBonds = derive { name="fBonds"; version="3010.77"; sha256="00rc3i0iyqcpsqvc036csa1c8gxwcnniwj3l2irmcalx4p8650w0"; depends=[fBasics timeDate timeSeries]; }; +fCertificates = derive { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; }; +fCopulae = derive { name="fCopulae"; version="3011.81"; sha256="0r4g567icgiiz6cxi6ak3kzrav9qzsc6zvww5dj1pd8mkd4r1f0y"; depends=[fBasics fMultivar timeDate timeSeries]; }; +fExoticOptions = derive { name="fExoticOptions"; version="2152.78"; sha256="0h58prj8nh340b0fxxkgg4bk25yxvb4f8ppq677hr12x8sysf1a8"; depends=[fBasics fOptions timeDate timeSeries]; }; +fExpressCertificates = derive { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[fCertificates Matrix mvtnorm tmvtnorm]; }; +fExtremes = derive { name="fExtremes"; version="3010.81"; sha256="0bzgnn0wf7lqhj7b2dbbhi61s8fi2kmi87gg9hzqqi6p7krnz1n5"; depends=[fBasics fGarch fTrading timeDate timeSeries]; }; +fGarch = derive { name="fGarch"; version="3010.82"; sha256="08q452pasvjhsg2ks6c52lqg276hlbdwk0vh25xya2bw2bgbqy99"; depends=[fBasics timeDate timeSeries]; }; +fICA = derive { name="fICA"; version="1.0-2"; sha256="058kkhjksm0nrfaj0csi6dgzr83kq4cln04v9fja12cqvdij9k7k"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive { name="fImport"; version="3000.82"; sha256="07yqppl8sbfa0x9k4n7hh6hcgyxpcvlk74hhylib4nzqm70bn0sq"; depends=[timeDate timeSeries]; }; -fMultivar = derive { name="fMultivar"; version="3011.78"; sha256="115hqbbxsdjs5v2rhalg8vz0m5lyg8ppjjqmbq1x21jdnbg6l0fl"; depends=[timeDate timeSeries fBasics cubature mvtnorm sn]; }; -fNonlinear = derive { name="fNonlinear"; version="3010.78"; sha256="0pmz16b606i3mx05zjln4nyl53ks7rlwgm45ldr9qgmw51pflwz9"; depends=[timeDate timeSeries fBasics fGarch]; }; -fOptions = derive { name="fOptions"; version="3010.83"; sha256="01yr3hrfiq4hjhidl5pl1gcqg0myg4acmnipjhq70l3q50cfjm8l"; depends=[timeDate timeSeries fBasics]; }; -fPortfolio = derive { name="fPortfolio"; version="3011.81"; sha256="1rmyp2dv1jgrfj76mnggvi98ffa0yr8d9dlxxmg5pc6pdy2g4q4c"; depends=[timeDate timeSeries fBasics fAssets fCopulae robustbase MASS Rglpk slam Rsymphony Rsolnp kernlab quadprog rneos]; }; -fRegression = derive { name="fRegression"; version="3011.81"; sha256="1qyacwwa2mjq9szwwwfdnny4np68bj1j4bvfkywl7q7x44p4n5b4"; depends=[timeDate timeSeries fBasics lmtest mgcv nnet polspline]; }; -fSRM = derive { name="fSRM"; version="0.6.1"; sha256="0d545i4sqkmimy42jgryyafzxayr62prwa47x11v5kkd63gmn3j2"; depends=[lavaan plyr reshape2 ggplot2 scales foreign tcltk2 gridExtra]; }; -fTrading = derive { name="fTrading"; version="3010.78"; sha256="0qakjxnr5nslw06ywlj65m3w7pjgn5hixxc2rnqhvvvmjpdxybz7"; depends=[timeDate timeSeries fBasics]; }; -fUnitRoots = derive { name="fUnitRoots"; version="3010.78"; sha256="04nwwazd8jvzds6p4njzq4wpcsrvvvs0y9z8v8r402myd4856ssm"; depends=[urca timeDate timeSeries fBasics]; }; +fMultivar = derive { name="fMultivar"; version="3011.78"; sha256="115hqbbxsdjs5v2rhalg8vz0m5lyg8ppjjqmbq1x21jdnbg6l0fl"; depends=[cubature fBasics mvtnorm sn timeDate timeSeries]; }; +fNonlinear = derive { name="fNonlinear"; version="3010.78"; sha256="0pmz16b606i3mx05zjln4nyl53ks7rlwgm45ldr9qgmw51pflwz9"; depends=[fBasics fGarch timeDate timeSeries]; }; +fOptions = derive { name="fOptions"; version="3010.83"; sha256="01yr3hrfiq4hjhidl5pl1gcqg0myg4acmnipjhq70l3q50cfjm8l"; depends=[fBasics timeDate timeSeries]; }; +fPortfolio = derive { name="fPortfolio"; version="3011.81"; sha256="1rmyp2dv1jgrfj76mnggvi98ffa0yr8d9dlxxmg5pc6pdy2g4q4c"; depends=[fAssets fBasics fCopulae kernlab MASS quadprog Rglpk rneos robustbase Rsolnp Rsymphony slam timeDate timeSeries]; }; +fRegression = derive { name="fRegression"; version="3011.81"; sha256="1qyacwwa2mjq9szwwwfdnny4np68bj1j4bvfkywl7q7x44p4n5b4"; depends=[fBasics lmtest mgcv nnet polspline timeDate timeSeries]; }; +fSRM = derive { name="fSRM"; version="0.6.1"; sha256="0d545i4sqkmimy42jgryyafzxayr62prwa47x11v5kkd63gmn3j2"; depends=[foreign ggplot2 gridExtra lavaan plyr reshape2 scales tcltk2]; }; +fTrading = derive { name="fTrading"; version="3010.78"; sha256="0qakjxnr5nslw06ywlj65m3w7pjgn5hixxc2rnqhvvvmjpdxybz7"; depends=[fBasics timeDate timeSeries]; }; +fUnitRoots = derive { name="fUnitRoots"; version="3010.78"; sha256="04nwwazd8jvzds6p4njzq4wpcsrvvvs0y9z8v8r402myd4856ssm"; depends=[fBasics timeDate timeSeries urca]; }; factorQR = derive { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; }; factorplot = derive { name="factorplot"; version="1.1-1"; sha256="1l8pabf32dr12l7b4dgv5jaxpsjymgdxc51miv72zczrx8adc7da"; depends=[multcomp nnet]; }; -factualR = derive { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RJSONIO RCurl]; }; +factualR = derive { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; }; fail = derive { name="fail"; version="1.2"; sha256="0xzvb71iq20ah1x1zlb9kbx0r47jhqlzxx0sxwhkibglpzskg84z"; depends=[BBmisc]; }; faisalconjoint = derive { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; falcon = derive { name="falcon"; version="0.1"; sha256="0yas8a8nqdp03s77k5z1xlyz59gapyx68pz0mf6i2snjwpgai59v"; depends=[]; }; falsy = derive { name="falsy"; version="1.0.1"; sha256="1n2b2h7w7p3vib4vgb9vadd3c07dx12vz5gm8bawbdx7llh2pr24"; depends=[]; }; fame = derive { name="fame"; version="2.18"; sha256="132wb59d15bs94fga5hwxxr9pklyp2rjn448nl8lx5spjrvycwf4"; depends=[tis]; }; fanc = derive { name="fanc"; version="1.23"; sha256="01bsny14r3i0a0yxbq3c670vh6m17g0lcjiphm6g5427rkn70whq"; depends=[Matrix]; }; -fanovaGraph = derive { name="fanovaGraph"; version="1.4.7"; sha256="19bzl6yrmi5lgyx6nq3f7i0rdaz2ig580h8116axrsxpx8c4d52x"; depends=[sensitivity igraph DiceKriging]; }; +fanovaGraph = derive { name="fanovaGraph"; version="1.4.7"; sha256="19bzl6yrmi5lgyx6nq3f7i0rdaz2ig580h8116axrsxpx8c4d52x"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive { name="fanplot"; version="3.4.0"; sha256="1arb10jxksicrdpgj8fq8r0sdnzvvdjjbw357aplqh422x54w4mp"; depends=[]; }; -faoutlier = derive { name="faoutlier"; version="0.5"; sha256="1via1gggcj6cpdkyn61fbvlvhl47dwv9hi81x2jlq15lh340ljd4"; depends=[sem mvtnorm lattice lavaan mirt MASS]; }; +faoutlier = derive { name="faoutlier"; version="0.5"; sha256="1via1gggcj6cpdkyn61fbvlvhl47dwv9hi81x2jlq15lh340ljd4"; depends=[lattice lavaan MASS mirt mvtnorm sem]; }; far = derive { name="far"; version="0.6-4"; sha256="166lhswdd1shx591wvx8a3lwzjini60mc37rbb3qvm6fxrb6fl55"; depends=[nlme]; }; faraway = derive { name="faraway"; version="1.0.6"; sha256="10vj38chfnlz595pdi16v8gcwsbmn8a7p4gb0mm98dncyin5p2a3"; depends=[]; }; farsi = derive { name="farsi"; version="1.0"; sha256="0y14f86bccwjirdx33383wa605y7l7lr0w7ygvg8r7f7izkv7r3n"; depends=[]; }; fast = derive { name="fast"; version="0.63"; sha256="00ag9d0dwn9al104y93m8dclbjqabr9liif8gr19v3gv6k2k6p2c"; depends=[zoo]; }; -fastGHQuad = derive { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp Rcpp]; }; -fastHICA = derive { name="fastHICA"; version="1.0"; sha256="02lqqni7j2sp3ndb3kq785d7jf08p2s3ch30di8ffhwn57indald"; depends=[fastICA energy]; }; +fastGHQuad = derive { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp]; }; +fastHICA = derive { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; fastICA = derive { name="fastICA"; version="1.2-0"; sha256="0ykk78fsk5da2g16i4wji85bvji7nayjvkfp07hyaxq9d15jmf0r"; depends=[]; }; -fastM = derive { name="fastM"; version="0.0-2"; sha256="0q5dz47sqj6d4r3k6l6q34l5ajb8fjbf7xam75scp0mg3czswnfn"; depends=[Rcpp Rcpp RcppArmadillo]; }; -fastR = derive { name="fastR"; version="0.8-1"; sha256="08p03i72zn0cbwjsxpnsknk0148dx3pfwkw740x7f52c3jgbb1gi"; depends=[mosaic lattice mosaicData]; }; +fastM = derive { name="fastM"; version="0.0-2"; sha256="0q5dz47sqj6d4r3k6l6q34l5ajb8fjbf7xam75scp0mg3czswnfn"; depends=[Rcpp RcppArmadillo]; }; +fastR = derive { name="fastR"; version="0.10"; sha256="0bd164lij12yfqjykxj1m4rma7x2y4kpv4fspjlp1vpwqn3h4lb9"; depends=[lattice mosaic mosaicData]; }; fastSOM = derive { name="fastSOM"; version="0.9"; sha256="03501d5289lrlr4qcgxciz160hqc6nhqb9ab266fr132fkbiv4id"; depends=[]; }; -fastclime = derive { name="fastclime"; version="1.2.5"; sha256="12k7bkq4gkkyh8lr2whmi73mzcy7wmfzwgi20kli7r4g39n3a1kv"; depends=[lattice igraph MASS Matrix]; }; +fastclime = derive { name="fastclime"; version="1.2.5"; sha256="12k7bkq4gkkyh8lr2whmi73mzcy7wmfzwgi20kli7r4g39n3a1kv"; depends=[igraph lattice MASS Matrix]; }; fastcluster = derive { name="fastcluster"; version="1.1.16"; sha256="0x2prrsnqi5iqx23ki6y2agndjq8058ph6s703i4avrqi1q1w1q8"; depends=[]; }; fastcox = derive { name="fastcox"; version="1.1.1"; sha256="1a5i0ragl0r6p29iamkn04igakiwyysykfbs2p6ybgy8pfdq69sv"; depends=[Matrix]; }; fastmatch = derive { name="fastmatch"; version="1.0-4"; sha256="16gfizfb1p7rjybrfm57nb6hdm30iirbppva8p8xf8pndz35fjbs"; depends=[]; }; fastpseudo = derive { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; fat2Lpoly = derive { name="fat2Lpoly"; version="1.1.1"; sha256="0xgxlx9m6lgcn784892g2xvnabyq8k45wi3xrszrbdxxa7zqd1i4"; depends=[kinship2 multgee]; }; fbRanks = derive { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; }; -fbati = derive { name="fbati"; version="1.0-1"; sha256="1ia67dg9b61kc14mjg7065v0c6n6agdp8cjdviasyzga00wzsyxj"; depends=[pbatR fgui rootSolve]; }; -fbroc = derive { name="fbroc"; version="0.1.0"; sha256="1zpg796day8qlvah3d4qy8118knxx7vfa3gf50jcsv97b8r15dmz"; depends=[ggplot2 Rcpp Rcpp]; }; -fcd = derive { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[glmnet MASS combinat]; }; -fclust = derive { name="fclust"; version="1.1"; sha256="1nimfgirpcff5dqqx2jqn25ma9j0agffimymrv9x5ivfdncdflbg"; depends=[]; }; +fbati = derive { name="fbati"; version="1.0-1"; sha256="1ia67dg9b61kc14mjg7065v0c6n6agdp8cjdviasyzga00wzsyxj"; depends=[fgui pbatR rootSolve]; }; +fbroc = derive { name="fbroc"; version="0.2.1"; sha256="06qpdnh86klkbwiv593l57wnbamrmcj5ysabyrbjf9mr8mjzhkkj"; depends=[ggplot2 Rcpp]; }; +fcd = derive { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; +fclust = derive { name="fclust"; version="1.1.1"; sha256="0gxgyvz6nzqp5sdjhfdjmm3r4lf1b4min3s5rfddwdqiswzxg8m8"; depends=[]; }; fcros = derive { name="fcros"; version="1.3"; sha256="1ylkma69gfc5ij3vvf1axyasya31qm5bwj2bjlvj12byf52wsiy8"; depends=[]; }; fda = derive { name="fda"; version="2.4.4"; sha256="05rvrp29ip1wrk2wly06wdry2a2riynkx677nx5lg240lz12d6yw"; depends=[Matrix]; }; fda_usc = derive { name="fda.usc"; version="1.2.1"; sha256="1w0dw06vgviia4yy2v5mrq0jvnfvdp7y8f2x246v3xliqgjmg7as"; depends=[fda MASS mgcv rpart]; }; -fdaMixed = derive { name="fdaMixed"; version="0.4"; sha256="15m13v71kqxd9gqiymgfkq0dvcpzp05576m8zkg08m0k067ga9bd"; depends=[Formula Rcpp Rcpp RcppArmadillo]; }; -fdakma = derive { name="fdakma"; version="1.2"; sha256="17nbaal3m2rz423fq34fia8pb75dzdzsj5d8w6g2iwckqbapszn0"; depends=[]; }; -fdasrvf = derive { name="fdasrvf"; version="1.4.2"; sha256="12x04fi0sxs9yh1mf9iykk69zlz6m31j7s01in28p5hgk6wqf8fi"; depends=[foreach mvtnorm matrixcalc numDeriv]; }; +fdaMixed = derive { name="fdaMixed"; version="0.4"; sha256="15m13v71kqxd9gqiymgfkq0dvcpzp05576m8zkg08m0k067ga9bd"; depends=[Formula Rcpp RcppArmadillo]; }; +fdakma = derive { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; +fdasrvf = derive { name="fdasrvf"; version="1.4.2"; sha256="12x04fi0sxs9yh1mf9iykk69zlz6m31j7s01in28p5hgk6wqf8fi"; depends=[foreach matrixcalc mvtnorm numDeriv]; }; fdatest = derive { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; -fdrDiscreteNull = derive { name="fdrDiscreteNull"; version="1.0"; sha256="1388a9hjbgblmhx5f3ddk16kigzsik9bvw179d1szk33kadfq2vp"; depends=[MCMCpack]; }; +fdrDiscreteNull = derive { name="fdrDiscreteNull"; version="1.0"; sha256="1388a9hjbgblmhx5f3ddk16kigzsik9bvw179d1szk33kadfq2vp"; depends=[edgeR MCMCpack]; }; fdrci = derive { name="fdrci"; version="2.0"; sha256="0smyl9phl02wghimawvff3h267w3h213jbqpka155i6cfzig9qjy"; depends=[]; }; fdrtool = derive { name="fdrtool"; version="1.2.14"; sha256="0q4mxm3vxhvxxbkgl9vxs3q93icipg9hz7qcr4vas8cks1hmzbdw"; depends=[]; }; fds = derive { name="fds"; version="1.7"; sha256="164f2cbywph7kyn712lfq4d86v22j4y3fg5i9zyz956hipqv0qvw"; depends=[rainbow RCurl]; }; fdth = derive { name="fdth"; version="1.2-1"; sha256="0rr9p2rns5ws111iqcicrlpcv47fkbxf161yxkkzfs2l3f1kgw14"; depends=[]; }; -feature = derive { name="feature"; version="1.2.11"; sha256="0dgiv9gwyklnw8w0cpchakadc1vqcngjg39cha6gvl2i3csgxz4p"; depends=[ks rgl misc3d]; }; +feature = derive { name="feature"; version="1.2.11"; sha256="0dgiv9gwyklnw8w0cpchakadc1vqcngjg39cha6gvl2i3csgxz4p"; depends=[ks misc3d rgl]; }; features = derive { name="features"; version="2011.8-2"; sha256="0yshwqv2mzl5jj323jwxscpz2ygb4ywxh6q0zwphb24bhv7h9lwd"; depends=[lokern]; }; fechner = derive { name="fechner"; version="1.0-2"; sha256="0yhiqr0wlka3wq0nhwy9n02ax3x5b0y803iadbsr3xb54pxbfbqd"; depends=[]; }; federalregister = derive { name="federalregister"; version="0.1.2"; sha256="0f73jhzhqi3a97iyfx5c5i09vxwnyypgw6668z7nch8lvq337s8x"; depends=[RCurl RJSONIO]; }; +fermicatsR = derive { name="fermicatsR"; version="1.3"; sha256="0vv3i1f01rjsd17a8z2wcf3iv6xlwg7fki99z3p5h8m4g6jwljfk"; depends=[]; }; ff = derive { name="ff"; version="2.2-13"; sha256="1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"; depends=[bit]; }; -ffbase = derive { name="ffbase"; version="0.11.3"; sha256="0n65i2a91jjjpzfw3placf6j6sbf8azzd1sck4adha6iiwpi8b1n"; depends=[ff bit fastmatch]; }; +ffbase = derive { name="ffbase"; version="0.12.1"; sha256="1qgmk1cn8s89amfmzzr2zhg6w4wwn4k79i92ib15j02i4csvykjj"; depends=[bit fastmatch ff]; }; ffmanova = derive { name="ffmanova"; version="0.2-2"; sha256="0sw8br73mx552m4b5zi4qgjcrwxflmgsnvs4mlnxh8g2gaf5bx4j"; depends=[]; }; fftw = derive { name="fftw"; version="1.0-3"; sha256="01nncrf2p0yq49lhd5aq4hvhp87f25r0x7siqnaldv5zq24krl30"; depends=[]; }; fftwtools = derive { name="fftwtools"; version="0.9-7"; sha256="1pd6ri9qh8rj5dahznl38l6haa1x6f2w91mxi83lic76lpddnxly"; depends=[]; }; @@ -3466,41 +3544,42 @@ fgac = derive { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh fgof = derive { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; }; fgpt = derive { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; }; fgui = derive { name="fgui"; version="1.0-5"; sha256="0gzwxzvf2y9p5rlfk862d7l1dm2sdwjhjpcb8p494cj4g1xshazg"; depends=[]; }; -fheatmap = derive { name="fheatmap"; version="1.0.0"; sha256="0braywpc0zghv1lnwb0c83p8ls2w7b8d2gbvv0p4123rhax5limw"; depends=[RColorBrewer gdata ggplot2 reshape2 gplots]; }; -fields = derive { name="fields"; version="8.2-1"; sha256="1zsi3ngp50f61nn93lh1v895as4lp63znf7bzn2q3hsl6ncaylbc"; depends=[spam maps]; }; -fifer = derive { name="fifer"; version="1.0"; sha256="0vbkks6y6pacgpiixm10fbfa34lmk5r9kwd30lfjf0g7r51fhvv9"; depends=[xtable MASS]; }; +fheatmap = derive { name="fheatmap"; version="1.0.0"; sha256="0braywpc0zghv1lnwb0c83p8ls2w7b8d2gbvv0p4123rhax5limw"; depends=[gdata ggplot2 gplots RColorBrewer reshape2]; }; +fields = derive { name="fields"; version="8.2-1"; sha256="1zsi3ngp50f61nn93lh1v895as4lp63znf7bzn2q3hsl6ncaylbc"; depends=[maps spam]; }; +fifer = derive { name="fifer"; version="1.0"; sha256="0vbkks6y6pacgpiixm10fbfa34lmk5r9kwd30lfjf0g7r51fhvv9"; depends=[MASS xtable]; }; filehash = derive { name="filehash"; version="2.2-2"; sha256="0766wrc42qh7r99bd2zy50vvdnqlz0vkzplskzkm5f4g63qdhjxh"; depends=[]; }; -filehashSQLite = derive { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[filehash DBI RSQLite filehash DBI]; }; +filehashSQLite = derive { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; +filematrix = derive { name="filematrix"; version="1.0"; sha256="17rkf9izhpz3nljv9s56fannd4v7dzsgk6igl7s9mkzmzn4fyp0g"; depends=[]; }; filenamer = derive { name="filenamer"; version="0.2"; sha256="0f2xvqp75b8v59707z26y746vvag3f2mcykafqp5cy8cqrf7x61j"; depends=[]; }; financial = derive { name="financial"; version="0.2"; sha256="1v6jgs3rq57byin5mynslfjk3zrx91qz36558nn17mv6z0qsf10v"; depends=[]; }; findpython = derive { name="findpython"; version="1.0.1"; sha256="0fa01znc9cckj4ay4zmwmssm2lkhmsw6h07y1pwgd6z1b2pj7bns"; depends=[]; }; fingerprint = derive { name="fingerprint"; version="3.5.2"; sha256="042aycxs00rglqh2y27bjlwkk6z312gavli7g8xvqfx1lisijrjk"; depends=[]; }; -finiteruinprob = derive { name="finiteruinprob"; version="0.4"; sha256="0wcllbqkryll3v3fjb6k210pcgkskzrpa78gg8nda0jvkij11zb7"; depends=[sdprisk numDeriv]; }; +finiteruinprob = derive { name="finiteruinprob"; version="0.4"; sha256="0wcllbqkryll3v3fjb6k210pcgkskzrpa78gg8nda0jvkij11zb7"; depends=[numDeriv sdprisk]; }; fishMod = derive { name="fishMod"; version="0.25"; sha256="0mg1bziz2ia406m4ilc7hw1bghrgdibm537hnlf9ffhfayjc4kid"; depends=[]; }; fisheyeR = derive { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; }; -fishmethods = derive { name="fishmethods"; version="1.7-0"; sha256="0kgfv78f8a460nfvpfrrqfiy3ipbl3775axydal3vm1zf4l6k2z3"; depends=[MASS boot bootstrap]; }; -fishmove = derive { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[ggplot2 plyr MASS boot]; }; +fishmethods = derive { name="fishmethods"; version="1.8-0"; sha256="1n5wwwnggflq2y7j3m3kf324mwdhf45ihi25gbqyv79qklg5xcai"; depends=[boot bootstrap MASS]; }; +fishmove = derive { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[boot ggplot2 MASS plyr]; }; fit_models = derive { name="fit.models"; version="0.5-10"; sha256="06pj26dbnq6mf9wxinvjzwyn36656f66a4bmky36r7fzi92gf3d8"; depends=[lattice]; }; -fit4NM = derive { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[gWidgets tkrplot RGtk2 gWidgetsRGtk2 cairoDevice]; }; +fit4NM = derive { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; }; fitDRC = derive { name="fitDRC"; version="1.1"; sha256="1f6avw8ia9ks17zdagpmh6yvcmi53h5cvm0wwv9hsb92x5zfhxn9"; depends=[]; }; fitTetra = derive { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; -fitbitScraper = derive { name="fitbitScraper"; version="0.1.2"; sha256="10qm5j4g0vs7yg5nchwza73dpr7w3zqrkffpyl60ginvl0qlqj9j"; depends=[httr stringr RJSONIO]; }; +fitbitScraper = derive { name="fitbitScraper"; version="0.1.3"; sha256="0fh8qm4ws9idx0868rda7v1cs8g61q8zdx1ncyxijbvijhdslfgj"; depends=[httr RJSONIO stringr]; }; fitdistrplus = derive { name="fitdistrplus"; version="1.0-4"; sha256="02ds5vmxc3rk50c33rxdnpqf2hbx186ss6br29n6538q7734nra9"; depends=[survival]; }; flam = derive { name="flam"; version="1.0"; sha256="0jyx0wff5zdpnhgxz74k6fxgwdnl7khanahv63af22y0mqpd066f"; depends=[MASS]; }; -flare = derive { name="flare"; version="1.5.0"; sha256="03bq40lwwq49vvbarf37y7c3smm29mxqfxsc66gkg8l5pak4l38i"; depends=[lattice MASS Matrix igraph]; }; +flare = derive { name="flare"; version="1.5.0"; sha256="03bq40lwwq49vvbarf37y7c3smm29mxqfxsc66gkg8l5pak4l38i"; depends=[igraph lattice MASS Matrix]; }; flashClust = derive { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; -flexCWM = derive { name="flexCWM"; version="1.5"; sha256="1q6nkw6al56wc53sj719c94iv20a9a82pq4s62jnb2flq1pwdaml"; depends=[numDeriv mnormt mclust ellipse mixture Flury adehabitat MASS statmod]; }; +flexCWM = derive { name="flexCWM"; version="1.5"; sha256="1q6nkw6al56wc53sj719c94iv20a9a82pq4s62jnb2flq1pwdaml"; depends=[adehabitat ellipse Flury MASS mclust mixture mnormt numDeriv statmod]; }; +flexPM = derive { name="flexPM"; version="1.0"; sha256="0zchcqsjinf3fpw5ijnygh1ywn2fdj9a6rgv7vfb44dcjgy4k74f"; depends=[]; }; flexclust = derive { name="flexclust"; version="1.3-4"; sha256="1x9gyg69kb3wn02w885kl6hcwpf2ki66gzfayvc83jisrwxvdfvv"; depends=[lattice modeltools]; }; flexmix = derive { name="flexmix"; version="2.3-13"; sha256="1i205yw3kkxs27gqcs6zx0c2mh16p332a2p06wq6fdzb20bazg3z"; depends=[lattice modeltools nnet]; }; -flexsurv = derive { name="flexsurv"; version="0.6"; sha256="10y6v1m8w5h92y37pi26xqsb4l6wk6dz43593dngpfr9ww1j4aaa"; depends=[survival muhaz mvtnorm deSolve]; }; -flip = derive { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1wfrzxhfhchr33ghk7prhc7k4b8"; depends=[e1071 someMTP cherry Rcpp Rcpp RcppArmadillo]; }; +flexsurv = derive { name="flexsurv"; version="0.6"; sha256="10y6v1m8w5h92y37pi26xqsb4l6wk6dz43593dngpfr9ww1j4aaa"; depends=[deSolve muhaz mvtnorm survival]; }; +flip = derive { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1wfrzxhfhchr33ghk7prhc7k4b8"; depends=[cherry e1071 Rcpp RcppArmadillo someMTP]; }; flora = derive { name="flora"; version="0.2.4"; sha256="1rdwdx7mphfr7sk3yba0vhbsh3xggz2k6ip8dmfiqjjhv2vxji5k"; depends=[shiny]; }; flower = derive { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; }; flowfield = derive { name="flowfield"; version="1.0"; sha256="1cx3i0w3xq781mmms4x20fshlf1i9bwxw9bxx562crix3fq3m50j"; depends=[]; }; -flowr = derive { name="flowr"; version="0.9.6.5"; sha256="0nb715cgq9zgr7vr094q6y1j4dq77ckldn0f203jr368b9wqbqkh"; depends=[diagram knitr ggplot2 RSQLite reshape2]; }; flsa = derive { name="flsa"; version="1.05"; sha256="07z2b1pnpnimgbzkjgjl2b074pl9mml7nac2p8qvdgv7aj070cmh"; depends=[]; }; flux = derive { name="flux"; version="0.3-0"; sha256="0pc9cab2pwrfl0fnz29wp7a398r49hvbi50jp8i2fk2rfvck21a7"; depends=[caTools]; }; -fma = derive { name="fma"; version="2.01"; sha256="1j5mvhbrdnkyj4svibpahnz7d4221nkhja5b7fnh68mbmil607fc"; depends=[tseries forecast]; }; +fma = derive { name="fma"; version="2.01"; sha256="1j5mvhbrdnkyj4svibpahnz7d4221nkhja5b7fnh68mbmil607fc"; depends=[forecast tseries]; }; fmri = derive { name="fmri"; version="1.5-1"; sha256="0dla5w8x4njw2njryb35nqh4r31wdps9bl5wzab2grzl546wwmwm"; depends=[]; }; fmsb = derive { name="fmsb"; version="0.5.1"; sha256="0y9h29a2wsngx73vn07f31l8ffrrm0si3qqx60hgxmb57v501kqz"; depends=[]; }; fmt = derive { name="fmt"; version="1.0"; sha256="13gsywnyvf9zy5n644g2xyd60f92w2dp7vil2dncjvjcqsib22a0"; depends=[]; }; @@ -3510,217 +3589,218 @@ foodweb = derive { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28 forams = derive { name="forams"; version="2.0-4"; sha256="1kvxlqdyzb3rqa45hp7jxjm009w0r6h78nr3yh9bqcz594zqidbq"; depends=[vegan]; }; foreach = derive { name="foreach"; version="1.4.2"; sha256="097zk7cwyjxgw2i8i547y437y0gg2fmyc5g4i8bbkn99004qzzfl"; depends=[codetools iterators]; }; forecTheta = derive { name="forecTheta"; version="1.0"; sha256="1ip6l27d37xqnmg8w285lq1y5j6akrjrviq4338c8sq075d8hckn"; depends=[forecast]; }; -forecast = derive { name="forecast"; version="6.0"; sha256="13pim2jz14jy9czjjaliv8x86iqcdaglzvdl9dz3xjj47c5nhhac"; depends=[zoo timeDate tseries fracdiff Rcpp nnet colorspace Rcpp RcppArmadillo]; }; +forecast = derive { name="forecast"; version="6.1"; sha256="1hwv3arcpkkhpj5n2dvpw2fyx687b6x6yakxx55cw9rrka70rx1k"; depends=[colorspace fracdiff nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; foreign = derive { name="foreign"; version="0.8-63"; sha256="1g5hl8drcmh2c9kpkr4443nw7dsxjwqsqs1q4bnhvw2lizs8bfb2"; depends=[]; }; -forensic = derive { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[genetics combinat]; }; +forensic = derive { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; +forestFloor = derive { name="forestFloor"; version="1.4"; sha256="152b5pq9901bdik3dqmn4gb0aiyl8zf8mg88d8xnz839aildp2fw"; depends=[kknn randomForest Rcpp rgl trimTrees]; }; forestplot = derive { name="forestplot"; version="1.1"; sha256="1h28lwqdizs450bm5hb8zfbmx633n8v5bj2p8mi4cl814sjjylr0"; depends=[]; }; formatR = derive { name="formatR"; version="1.2"; sha256="0dlj728qdm7wmxcxvw1ip64pl4ajgmi8ax69zafrn3306pg9y136"; depends=[]; }; -formula_tools = derive { name="formula.tools"; version="1.3.4"; sha256="1xxl45x88fpskwvfj6sbcbfng84plpf8sjrkwawzki9a41ydhwaq"; depends=[operator_tools]; }; +formula_tools = derive { name="formula.tools"; version="1.5.2"; sha256="1n2rw9zhrgcsjxrm108fs7sysk9jk1gmq0jmg9s7pm7ff76insnj"; depends=[operator_tools]; }; fortunes = derive { name="fortunes"; version="1.5-2"; sha256="1wv1x055v388ay4gnd1l8y6dgvamyfvmsd0ik9fziygwsaljb049"; depends=[]; }; forward = derive { name="forward"; version="1.0.3"; sha256="0swn5ysp3f660kl9jpmkck9324j1g3yhj2hl238rfrcr5wihxifc"; depends=[MASS]; }; -fossil = derive { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[sp maps shapefiles]; }; -fpCompare = derive { name="fpCompare"; version="0.1.0"; sha256="1b5jbw6rlrx3qdn0mcga4n4505jqqr2pbz77x0vxcyn35qv9d9ql"; depends=[]; }; -fpc = derive { name="fpc"; version="2.1-9"; sha256="01x7zcsbz9n10dxx8plb37c7z7pfz1xd5dvfrij3na327mny3pxs"; depends=[MASS cluster mclust flexmix prabclus class diptest mvtnorm robustbase kernlab trimcluster]; }; +fossil = derive { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; }; +fpCompare = derive { name="fpCompare"; version="0.2.0"; sha256="0s8gfnyj6kjwy3ymiy232bb5wzgkd1ainaqzlki7mcafa3dyzq0a"; depends=[]; }; +fpc = derive { name="fpc"; version="2.1-9"; sha256="01x7zcsbz9n10dxx8plb37c7z7pfz1xd5dvfrij3na327mny3pxs"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; }; fpca = derive { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; fpow = derive { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; }; -fpp = derive { name="fpp"; version="0.5"; sha256="1jqnx6bgpvnbbj2fa2b6m6aj8jd5cb9kz877r8kp7a5qj62xv1ww"; depends=[forecast fma expsmooth lmtest tseries]; }; +fpp = derive { name="fpp"; version="0.5"; sha256="1jqnx6bgpvnbbj2fa2b6m6aj8jd5cb9kz877r8kp7a5qj62xv1ww"; depends=[expsmooth fma forecast lmtest tseries]; }; fptdApprox = derive { name="fptdApprox"; version="2.0"; sha256="152bajs76wrapp0zdbkckff6kdkkm6sqqlqd2w220hsi96l2p9dh"; depends=[]; }; fracdiff = derive { name="fracdiff"; version="1.4-2"; sha256="03l5dqpqwwi5c8fwc2vissfawcsignai60h2zalknkibvk782dwq"; depends=[]; }; fracprolif = derive { name="fracprolif"; version="1.0.6"; sha256="1cpb71yk1245j6qz4mqvpqc3s3lrmav4blp5wlxasjizn3ilwh66"; depends=[emg numDeriv]; }; -fractal = derive { name="fractal"; version="2.0-0"; sha256="17wz3c9f1l1rphzdn7j27j5nb1ll6j84f9ihk0z6fni41050szv7"; depends=[splus2R ifultools sapa wmtsa scatterplot3d]; }; +fractal = derive { name="fractal"; version="2.0-0"; sha256="17wz3c9f1l1rphzdn7j27j5nb1ll6j84f9ihk0z6fni41050szv7"; depends=[ifultools sapa scatterplot3d splus2R wmtsa]; }; fractaldim = derive { name="fractaldim"; version="0.8-4"; sha256="0fln4qn0d79agnnlzi8b9g9qn90zynq1cg9v5isiyi71345v45nr"; depends=[abind]; }; -fractalrock = derive { name="fractalrock"; version="1.1.0"; sha256="15f4w8hq3d8khgq269669ri16qxhar9646w40cw7wzh79r9gpf00"; depends=[futile_any futile_logger timeDate quantmod]; }; +fractalrock = derive { name="fractalrock"; version="1.1.0"; sha256="15f4w8hq3d8khgq269669ri16qxhar9646w40cw7wzh79r9gpf00"; depends=[futile_any futile_logger quantmod timeDate]; }; frailtyHL = derive { name="frailtyHL"; version="1.1"; sha256="1xjdph0ixanf9w4b6hx6igfhkcp8h93sclrg0pgqgmbvm41lhb1x"; depends=[Matrix numDeriv survival]; }; -frailtypack = derive { name="frailtypack"; version="2.7.5"; sha256="1wjb8l6aj1lsmbgczfag8a96r0z235yj315kr7dpkqkninn2bqwk"; depends=[survival boot MASS survC1]; }; -frair = derive { name="frair"; version="0.4"; sha256="1g52ykj1m9znpp0pvry7dnmhg4m73nbkw0bp31zl6pcsdgmxxqjr"; depends=[bbmle emdbook boot]; }; -frbs = derive { name="frbs"; version="3.0-0"; sha256="0v2l8s5jla8jsl9izqfpxhcd1dnrxsa0czlhq1wmx5k06jvbvpdw"; depends=[]; }; +frailtypack = derive { name="frailtypack"; version="2.7.5"; sha256="1wjb8l6aj1lsmbgczfag8a96r0z235yj315kr7dpkqkninn2bqwk"; depends=[boot MASS survC1 survival]; }; +frair = derive { name="frair"; version="0.4"; sha256="1g52ykj1m9znpp0pvry7dnmhg4m73nbkw0bp31zl6pcsdgmxxqjr"; depends=[bbmle boot emdbook]; }; +frbs = derive { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; freeknotsplines = derive { name="freeknotsplines"; version="1.0"; sha256="19zs42q9njknirdbrbnp8bv4vr32kd8wxmkqj0a0nh06i5fcx67r"; depends=[]; }; freestats = derive { name="freestats"; version="0.0.3"; sha256="0b18n8idap089gkmjknzzb94dvs2drpdqs0mrw7dqnacxgbbqwfj"; depends=[MASS mvtnorm]; }; freqMAP = derive { name="freqMAP"; version="0.2"; sha256="02hpkqqrxifrr1cxn5brp166jwa8lgl1mcgmq7s8csrbbd900ziv"; depends=[]; }; -freqparcoord = derive { name="freqparcoord"; version="1.0.0"; sha256="0hn5y10yp3j76lqrmj6dsaafamgy4pfxx1p4y92z17s79x29j59q"; depends=[ggplot2 GGally FNN mvtnorm]; }; -freqweights = derive { name="freqweights"; version="1.0.1"; sha256="13wy8nzs888yn7ld96qq3p7k3xjn6s38qdlfb3nqmh52daqcnn7m"; depends=[plyr dplyr data_table biglm fastcluster FactoMineR]; }; +freqparcoord = derive { name="freqparcoord"; version="1.0.0"; sha256="0hn5y10yp3j76lqrmj6dsaafamgy4pfxx1p4y92z17s79x29j59q"; depends=[FNN GGally ggplot2 mvtnorm]; }; +freqweights = derive { name="freqweights"; version="1.0.1"; sha256="13wy8nzs888yn7ld96qq3p7k3xjn6s38qdlfb3nqmh52daqcnn7m"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; }; frm = derive { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive { name="frmhet"; version="1.1.2"; sha256="1a6q5qz22b4sx5l1jz50x1q3bz8sj91dj2cahq28h6ss5b8vfn0y"; depends=[]; }; frmpd = derive { name="frmpd"; version="1.0.1"; sha256="104frdraawj8g76589kz4csbgzkvs4rgdhgwmb77srhqp5nc8v96"; depends=[]; }; frmqa = derive { name="frmqa"; version="0.1-5"; sha256="0vd5jnjzhkc0vd4cqn4cs6a3limd4fxwyb5i7845rwmkzk1944aj"; depends=[partitions Rmpfr]; }; -frontier = derive { name="frontier"; version="1.1-0"; sha256="0k2ap22qddzki63biikr1jzi5vmqz4j06d7qrf1y8axdq1q1cr44"; depends=[micEcon lmtest moments Formula miscTools]; }; +frontier = derive { name="frontier"; version="1.1-0"; sha256="0k2ap22qddzki63biikr1jzi5vmqz4j06d7qrf1y8axdq1q1cr44"; depends=[Formula lmtest micEcon miscTools moments]; }; frontiles = derive { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; frt = derive { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; fscaret = derive { name="fscaret"; version="0.9.4"; sha256="0cna1cixq021lka7c8jgfqr6h8vvyvylckkbfay10ng7cxpqa44c"; depends=[caret gsubfn hmeasure]; }; fsia = derive { name="fsia"; version="1.0"; sha256="0qa4avd1xiwh1ih1cj067r7vipab2ngspq7hfd0xbapwx87fggrg"; depends=[]; }; -fslr = derive { name="fslr"; version="1.3"; sha256="0668fpr3avqhyq42an9la71ln40kfjnf108nmkrwndvwl864i99w"; depends=[stringr oro_nifti matrixStats]; }; +fslr = derive { name="fslr"; version="1.4.4"; sha256="0k6973hd1q54q6243lir4xi3wlrsiqb526qsh9gryx9ha4iv0rmc"; depends=[matrixStats oro_nifti R_utils scales stringr]; }; fso = derive { name="fso"; version="2.0-1"; sha256="02dr12bssiwn8s1aa1941hfpa4007gd65f3l4s74gs2vgjzdxf8s"; depends=[labdsv rgl]; }; ftnonpar = derive { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; -fts = derive { name="fts"; version="0.9.9"; sha256="1qgp8xdwr5pp2b7nd8r717a6p8b6izwqrindx2d1d0lhhnqlcwhv"; depends=[zoo BH]; }; -ftsa = derive { name="ftsa"; version="4.3"; sha256="0hf3v83a5mh6s8y3hhvnwqmj55n707c8lgkpmxlc52gxykgnayjz"; depends=[forecast rainbow colorspace MASS pcaPP]; }; +fts = derive { name="fts"; version="0.9.9"; sha256="1qgp8xdwr5pp2b7nd8r717a6p8b6izwqrindx2d1d0lhhnqlcwhv"; depends=[BH zoo]; }; +ftsa = derive { name="ftsa"; version="4.3"; sha256="0hf3v83a5mh6s8y3hhvnwqmj55n707c8lgkpmxlc52gxykgnayjz"; depends=[colorspace forecast MASS pcaPP rainbow]; }; fueleconomy = derive { name="fueleconomy"; version="0.1"; sha256="1svy5naqfwdvmz98l80j38v06563vknajisnk596yq5rwapl71vj"; depends=[]; }; -fugeR = derive { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[snowfall Rcpp Rcpp]; }; +fugeR = derive { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; }; fun = derive { name="fun"; version="0.1-0"; sha256="0z4nq2w1wz1clc7cf87pf870hayxq5mpzhllfgwj4mmh2xpphnrf"; depends=[]; }; -funFEM = derive { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[MASS fda elasticnet]; }; +funFEM = derive { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; funHDDC = derive { name="funHDDC"; version="1.0"; sha256="038m64yv27wz7ki2gcn94q011p8mv0ggmli5n27y0f5bnkfh6d6w"; depends=[fda]; }; functional = derive { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; funreg = derive { name="funreg"; version="1.1"; sha256="1sxr4mylcpbya197d55yi6d7g5pfspaf59xxbwjgmwgjw06rl76r"; depends=[MASS mgcv mvtnorm]; }; -funtimes = derive { name="funtimes"; version="1.0"; sha256="0jdl09x0fvfz08xyg1yfyhn0lgg8ycqbli4ag9js0yva8pwab7lh"; depends=[Jmisc]; }; +funtimes = derive { name="funtimes"; version="1.1"; sha256="0z478b57l7hg8b42jyzcdjzs3nn62m2y117xmgbw1gbyf3rcnjkw"; depends=[Jmisc]; }; futile_any = derive { name="futile.any"; version="1.3.0"; sha256="1c7pj64kz09qzwrxvkp1w1w8mvxwq36zkj6w4b7yyi8v7x3daq2a"; depends=[lambda_r]; }; -futile_logger = derive { name="futile.logger"; version="1.4.1"; sha256="1plld1icxrcay7llplbd4i8inpg97crpnczk58mbk26j8glqbr51"; depends=[lambda_r futile_options]; }; -futile_matrix = derive { name="futile.matrix"; version="1.2.2"; sha256="1cb975n93ck5fma0gvvbzainp7hv3nr8fc6b3qi8gnxy0d2i029m"; depends=[lambda_r lambda_tools futile_logger RMTstat]; }; +futile_logger = derive { name="futile.logger"; version="1.4.1"; sha256="1plld1icxrcay7llplbd4i8inpg97crpnczk58mbk26j8glqbr51"; depends=[futile_options lambda_r]; }; +futile_matrix = derive { name="futile.matrix"; version="1.2.2"; sha256="1cb975n93ck5fma0gvvbzainp7hv3nr8fc6b3qi8gnxy0d2i029m"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; futile_options = derive { name="futile.options"; version="1.0.0"; sha256="1hp82h6xqq5cck67h7lpf22n3j7mg3v1mla5y5ivnzrrb7iyr17f"; depends=[]; }; futile_paradigm = derive { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; fuzzyFDR = derive { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; -fuzzyMM = derive { name="fuzzyMM"; version="1.0.1"; sha256="1pqfc9b9l2xx5pl45hfildikqjsdgqfhqzi2nbb34026nla5m8vk"; depends=[osmar frbs igraph rgeos rgdal]; }; +fuzzyMM = derive { name="fuzzyMM"; version="1.0.1"; sha256="1pqfc9b9l2xx5pl45hfildikqjsdgqfhqzi2nbb34026nla5m8vk"; depends=[frbs igraph osmar rgdal rgeos]; }; fuzzyRankTests = derive { name="fuzzyRankTests"; version="0.3-5"; sha256="1g09506bbpk05a2r2wxjynjs8dmjd2q7x74d83vjscg1kdk4kazq"; depends=[]; }; fwdmsa = derive { name="fwdmsa"; version="0.2"; sha256="0p0kh8am6gajfaixkvq61f12hfbm6chl9372yzn1yilhiyvqdxgp"; depends=[]; }; fwi_fbp = derive { name="fwi.fbp"; version="1.5"; sha256="08ngg70vi2fca5yblm2gf1lkjjmb6m39d8q6429n7i3jn6ca5nzf"; depends=[]; }; -fwsim = derive { name="fwsim"; version="0.3.3"; sha256="1ix4sl2krlr0b0wfgvy73qhpmkjymqcci3q3v60j20zapi55gxn2"; depends=[Rcpp Rcpp]; }; -fxregime = derive { name="fxregime"; version="1.0-3"; sha256="15fh8yhcba2gw2xfd0yiw5ssvbgb62l6vb28bxz71ckdyv9nsahk"; depends=[zoo strucchange car sandwich]; }; +fwsim = derive { name="fwsim"; version="0.3.3"; sha256="1ix4sl2krlr0b0wfgvy73qhpmkjymqcci3q3v60j20zapi55gxn2"; depends=[Rcpp]; }; +fxregime = derive { name="fxregime"; version="1.0-3"; sha256="15fh8yhcba2gw2xfd0yiw5ssvbgb62l6vb28bxz71ckdyv9nsahk"; depends=[car sandwich strucchange zoo]; }; g_data = derive { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; gCat = derive { name="gCat"; version="0.1"; sha256="10990ilsjk52kqkcdngj4nq0kcbn4w1syxl1mqjq2n5g1l002yjy"; depends=[]; }; gIPFrm = derive { name="gIPFrm"; version="2.0"; sha256="1syjsnna7b7y27yf7zsxjwq8z5f4wxf2hfadhgjaw898gvfcnrbc"; depends=[]; }; -gMCP = derive { name="gMCP"; version="0.8-8"; sha256="0568pqvcbrpqbppvpvmgxf23rzy1fgl892asq9lhcjslzsz89an5"; depends=[rJava JavaGD xlsxjars MASS PolynomF multcomp mvtnorm Matrix CommonJavaJars]; }; -gMWT = derive { name="gMWT"; version="0.9"; sha256="0c91bwwfm0qyqrrd3n9g6l8kackqm58hmamypn1awzpz1p13axyv"; depends=[clinfun Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; +gMCP = derive { name="gMCP"; version="0.8-8"; sha256="0568pqvcbrpqbppvpvmgxf23rzy1fgl892asq9lhcjslzsz89an5"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; +gMWT = derive { name="gMWT"; version="1.0"; sha256="12ryjpq0k3brw4xy4f6j89zm94j6phbzn9ga0nr9bzfvslhqjhna"; depends=[clinfun Rcpp RcppArmadillo]; }; gPCA = derive { name="gPCA"; version="1.0"; sha256="1ylb1d24dxnzpws9bbanwhyizjr3ljky2bhrph4c5yaq0zwwbrkw"; depends=[]; }; gPdtest = derive { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; -gProfileR = derive { name="gProfileR"; version="0.5.3"; sha256="0kv01b1ihwggzjd9plznz3il3b97pja11nqki3378zvpgfy5wzdn"; depends=[RCurl plyr]; }; -gRain = derive { name="gRain"; version="1.2-3"; sha256="0cxlni9b4p4g02zhhsbbpkwhx9y3x83vm7qd6lsca02yi96palsi"; depends=[gRbase igraph]; }; -gRapHD = derive { name="gRapHD"; version="0.2.4"; sha256="0fxd04s6zh23chks4k6nwb5w408xjy89b44pa42kv6qnqj86ylvm"; depends=[]; }; +gProfileR = derive { name="gProfileR"; version="0.5.3"; sha256="0kv01b1ihwggzjd9plznz3il3b97pja11nqki3378zvpgfy5wzdn"; depends=[plyr RCurl]; }; +gRain = derive { name="gRain"; version="1.2-3"; sha256="0cxlni9b4p4g02zhhsbbpkwhx9y3x83vm7qd6lsca02yi96palsi"; depends=[graph gRbase igraph]; }; +gRapHD = derive { name="gRapHD"; version="0.2.4"; sha256="0fxd04s6zh23chks4k6nwb5w408xjy89b44pa42kv6qnqj86ylvm"; depends=[graph]; }; gRapfa = derive { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; -gRbase = derive { name="gRbase"; version="1.7-0.1"; sha256="1x52i4c5jbry17y1pfnjq03kz4xxnk3anidva41z5alp7c73zlqv"; depends=[Matrix igraph Rcpp Rcpp RcppArmadillo RcppEigen]; }; -gRc = derive { name="gRc"; version="0.4-1"; sha256="1a6q24yj7js1sk0lfqbm7kdv605cby6i711w4dlygsxdvwxbrsdr"; depends=[gRbase]; }; -gRim = derive { name="gRim"; version="0.1-17"; sha256="0vn031r318kp78cx00n43fc42bv6sjyb8dm6q0l08s0g9n2w17dp"; depends=[gRbase gRain igraph Rcpp RcppArmadillo]; }; +gRbase = derive { name="gRbase"; version="1.7-0.1"; sha256="1x52i4c5jbry17y1pfnjq03kz4xxnk3anidva41z5alp7c73zlqv"; depends=[graph igraph Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; +gRc = derive { name="gRc"; version="0.4-1"; sha256="1a6q24yj7js1sk0lfqbm7kdv605cby6i711w4dlygsxdvwxbrsdr"; depends=[graph gRbase Rgraphviz]; }; +gRim = derive { name="gRim"; version="0.1-17"; sha256="0vn031r318kp78cx00n43fc42bv6sjyb8dm6q0l08s0g9n2w17dp"; depends=[gRain gRbase igraph Rcpp RcppArmadillo]; }; gSeg = derive { name="gSeg"; version="0.1"; sha256="0qnv3c0rla0g2fb4s4x1i0zdp3dlvi98qf80wlr54gnn7s9vpjf1"; depends=[]; }; gWidgets = derive { name="gWidgets"; version="0.0-54"; sha256="13lbbbnmkvb559klgsnz0q27qlyv102xakb6yccxsxjw249hm8c2"; depends=[]; }; -gWidgets2 = derive { name="gWidgets2"; version="1.0-5"; sha256="1y6vm6ds77yr1qiqlcaixbsarbwx5w53ba343svla7wva80ajbpl"; depends=[digest]; }; -gWidgets2RGtk2 = derive { name="gWidgets2RGtk2"; version="1.0-3"; sha256="041d510rxghcj5h6zw5258f4jnj1j9ycq2kdh0kl81fjr8n992jv"; depends=[memoise RGtk2 gWidgets2]; }; -gWidgets2tcltk = derive { name="gWidgets2tcltk"; version="1.0-4"; sha256="1c9vfnr6j4lvshvdzp88a45pjrdl0dfhr1rxlpz95d3cks9rfq1f"; depends=[digest memoise gWidgets2]; }; -gWidgetsRGtk2 = derive { name="gWidgetsRGtk2"; version="0.0-83"; sha256="1kn2095jx1amyzbkvgf7m466zqfv548n232xc555bpsrw9ma5qhk"; depends=[RGtk2 gWidgets cairoDevice]; }; -gWidgetstcltk = derive { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[gWidgets digest]; }; +gWidgets2 = derive { name="gWidgets2"; version="1.0-6"; sha256="0xh1f9j1y3zifz8xrvyp41c8zdgqx8lx0cg1sdqhxv8j3mxibcsg"; depends=[digest]; }; +gWidgets2RGtk2 = derive { name="gWidgets2RGtk2"; version="1.0-3"; sha256="041d510rxghcj5h6zw5258f4jnj1j9ycq2kdh0kl81fjr8n992jv"; depends=[gWidgets2 memoise RGtk2]; }; +gWidgets2tcltk = derive { name="gWidgets2tcltk"; version="1.0-4"; sha256="1c9vfnr6j4lvshvdzp88a45pjrdl0dfhr1rxlpz95d3cks9rfq1f"; depends=[digest gWidgets2 memoise]; }; +gWidgetsRGtk2 = derive { name="gWidgetsRGtk2"; version="0.0-83"; sha256="1kn2095jx1amyzbkvgf7m466zqfv548n232xc555bpsrw9ma5qhk"; depends=[cairoDevice gWidgets RGtk2]; }; +gWidgetstcltk = derive { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[digest gWidgets]; }; gains = derive { name="gains"; version="1.1"; sha256="1mn8db8yxgkf8z6nm6k76g5l3i3vnw750ksg3w9ysd2pcabb65g1"; depends=[]; }; -galts = derive { name="galts"; version="1.3"; sha256="0b18hsdcsx43rn8l4x9nhy9hgggjr5b8kvjnbxrf6r23qsdk43mn"; depends=[genalg DEoptim]; }; -gam = derive { name="gam"; version="1.09.1"; sha256="09p83ki821x57kc74klh6i1h8bz3acsrvibz3mzzcgq6sa8gzr5i"; depends=[]; }; +galts = derive { name="galts"; version="1.3"; sha256="0b18hsdcsx43rn8l4x9nhy9hgggjr5b8kvjnbxrf6r23qsdk43mn"; depends=[DEoptim genalg]; }; +gam = derive { name="gam"; version="1.12"; sha256="00rx8y7pcxabwjvg0ch6c76xqs43drjg3ih3kflqxdcl2rmaapnd"; depends=[foreach]; }; gamair = derive { name="gamair"; version="0.0-8"; sha256="11qwmhrzks8gi9is2n9xcy6cviy7a8mwh2v78fw78x7g7ccd8i9x"; depends=[]; }; gambin = derive { name="gambin"; version="1.1"; sha256="197k8j6mvf8236gwg8vvfnskf4hic9y075chsd8214n1nk7i6jmz"; depends=[]; }; gamboostLSS = derive { name="gamboostLSS"; version="1.1-3"; sha256="1gdsrizr4q5zyfs2g8c8fdwriqz0xrpq9vyy4wd2ywdh5lbi995b"; depends=[mboost]; }; gamboostMSM = derive { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; }; -gamclass = derive { name="gamclass"; version="0.55"; sha256="0nhy1qdc221hsnby8j0m2a4x4a8qwfixbaq4gd22rn1xpbsdnfw3"; depends=[car mgcv DAAG MASS rpart randomForest lattice latticeExtra ape KernSmooth]; }; -games = derive { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[maxLik Formula MASS stringr]; }; +gamclass = derive { name="gamclass"; version="0.55"; sha256="0nhy1qdc221hsnby8j0m2a4x4a8qwfixbaq4gd22rn1xpbsdnfw3"; depends=[ape car DAAG KernSmooth lattice latticeExtra MASS mgcv randomForest rpart]; }; +games = derive { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; }; gamlr = derive { name="gamlr"; version="1.13-1"; sha256="1y97zsb9shll93f6j7r95296c26dbmxwa1z67ziy0yh4gsgbijc8"; depends=[Matrix]; }; -gamlss = derive { name="gamlss"; version="4.3-4"; sha256="0qbxcfvhy8blswzv8194x9f08p25vhknnm3h4hhz9lp5gh536fbk"; depends=[gamlss_data gamlss_dist nlme MASS survival]; }; -gamlss_add = derive { name="gamlss.add"; version="4.3-3"; sha256="0cs4mcpm0ckaim3g8q7m4yb6y3izqgvndzgkqgrwr75cxz0wd4vh"; depends=[gamlss_dist gamlss mgcv nnet rpart]; }; -gamlss_cens = derive { name="gamlss.cens"; version="4.3.1"; sha256="1y3a4b6n86h0r287065kr574ix0qpc2nnjpp8fp49nbpxwxlz962"; depends=[gamlss_dist gamlss survival]; }; +gamlss = derive { name="gamlss"; version="4.3-4"; sha256="0qbxcfvhy8blswzv8194x9f08p25vhknnm3h4hhz9lp5gh536fbk"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; +gamlss_add = derive { name="gamlss.add"; version="4.3-3"; sha256="0cs4mcpm0ckaim3g8q7m4yb6y3izqgvndzgkqgrwr75cxz0wd4vh"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; +gamlss_cens = derive { name="gamlss.cens"; version="4.3.1"; sha256="1y3a4b6n86h0r287065kr574ix0qpc2nnjpp8fp49nbpxwxlz962"; depends=[gamlss gamlss_dist survival]; }; gamlss_data = derive { name="gamlss.data"; version="4.2-7"; sha256="0g3fmqrwxmj14r0p0ai1adq6cs3bd3ys47gjcja035xjiajg6cs2"; depends=[]; }; -gamlss_demo = derive { name="gamlss.demo"; version="4.3-1"; sha256="04xl2ddf8wg2j8m05y8j5avcgfrr55a7g6m9wzxx4k599m0c7c8i"; depends=[rpanel gamlss_dist gamlss_tr]; }; +gamlss_demo = derive { name="gamlss.demo"; version="4.3-1"; sha256="04xl2ddf8wg2j8m05y8j5avcgfrr55a7g6m9wzxx4k599m0c7c8i"; depends=[gamlss_dist gamlss_tr rpanel]; }; gamlss_dist = derive { name="gamlss.dist"; version="4.3-4"; sha256="0aymwh1lrjalravqf6nfz716v4r805aw82dsi0sn2nlb00fi8w2x"; depends=[MASS]; }; -gamlss_mx = derive { name="gamlss.mx"; version="4.3-1"; sha256="1sjm8a44nh88mvscpspyqsp2agjhwibi4kbyizyi78dmzf2sakiq"; depends=[gamlss_dist gamlss nnet]; }; +gamlss_mx = derive { name="gamlss.mx"; version="4.3-1"; sha256="1sjm8a44nh88mvscpspyqsp2agjhwibi4kbyizyi78dmzf2sakiq"; depends=[gamlss gamlss_dist nnet]; }; gamlss_nl = derive { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; }; -gamlss_spatial = derive { name="gamlss.spatial"; version="0.2"; sha256="0sjb47gnzrab4y23c0z7cxqq5k46k2rb31lmqws2c9zgf4n7aqbi"; depends=[gamlss_dist gamlss spam mgcv]; }; -gamlss_tr = derive { name="gamlss.tr"; version="4.3-1"; sha256="1fdy61i2dmz2qafk92kl9acjbxx5gm8s9kkc8k9nnx6230qg8iq6"; depends=[gamlss_dist gamlss]; }; -gamlss_util = derive { name="gamlss.util"; version="4.3-2"; sha256="13facgyd14jl4j09d446jjzs91zwmv85g22gkyyi1hl4i5v5nfc4"; depends=[gamlss_dist gamlss zoo]; }; -gamm4 = derive { name="gamm4"; version="0.2-3"; sha256="19vy5wik9nh77cm25gp3j3j8w8vinwzx5pv90nzdzvx84yvvf0y3"; depends=[Matrix lme4 mgcv]; }; +gamlss_spatial = derive { name="gamlss.spatial"; version="0.2"; sha256="0sjb47gnzrab4y23c0z7cxqq5k46k2rb31lmqws2c9zgf4n7aqbi"; depends=[gamlss gamlss_dist mgcv spam]; }; +gamlss_tr = derive { name="gamlss.tr"; version="4.3-1"; sha256="1fdy61i2dmz2qafk92kl9acjbxx5gm8s9kkc8k9nnx6230qg8iq6"; depends=[gamlss gamlss_dist]; }; +gamlss_util = derive { name="gamlss.util"; version="4.3-2"; sha256="13facgyd14jl4j09d446jjzs91zwmv85g22gkyyi1hl4i5v5nfc4"; depends=[gamlss gamlss_dist zoo]; }; +gamm4 = derive { name="gamm4"; version="0.2-3"; sha256="19vy5wik9nh77cm25gp3j3j8w8vinwzx5pv90nzdzvx84yvvf0y3"; depends=[lme4 Matrix mgcv]; }; gammSlice = derive { name="gammSlice"; version="1.3"; sha256="1vw8d0v0awyflh4gmbcf1g9nfx52cys8gpqvag5djri59p0y945a"; depends=[KernSmooth lattice mgcv]; }; gaoptim = derive { name="gaoptim"; version="1.1"; sha256="04igpn73k6f6652y496igwypfxmz4igg4jgxx6swqyi37182rqhm"; depends=[]; }; -gap = derive { name="gap"; version="1.1-12"; sha256="1760jwfrlfmb8crk8kba0swpazcznlv80c6j8fiyd9zxjhnq7zf5"; depends=[]; }; +gap = derive { name="gap"; version="1.1-16"; sha256="0xyln7ffapm31cvx4n86ncyg3cdz5d2149qb5h5xx3kf0a8r7gpz"; depends=[]; }; gapmap = derive { name="gapmap"; version="0.0.2"; sha256="0xykpy3cmbiwwa3s8f4777585r7l441qb9ks6ajym01scqcj3nwl"; depends=[ggplot2 reshape2]; }; gapminder = derive { name="gapminder"; version="0.1.0"; sha256="06hi4m9i86nkdyz7w9wa4qkpbsl2178qskzzy8168wlzayx820ad"; depends=[]; }; -gaselect = derive { name="gaselect"; version="1.0.5"; sha256="0xzx00n46x6x7w1xbx8nvabkkrna45pv1i70787m8h05q1yrjjij"; depends=[Rcpp Rcpp RcppArmadillo]; }; +gaselect = derive { name="gaselect"; version="1.0.5"; sha256="0xzx00n46x6x7w1xbx8nvabkkrna45pv1i70787m8h05q1yrjjij"; depends=[Rcpp RcppArmadillo]; }; gaussDiff = derive { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; -gaussquad = derive { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[polynom orthopolynom]; }; +gaussquad = derive { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[orthopolynom polynom]; }; gazepath = derive { name="gazepath"; version="1.0"; sha256="00k6617wra9pcvyr94mr48c21l7z6grlpgf9g02lh23p6900fjxq"; depends=[]; }; gb = derive { name="gb"; version="1.1.8-8"; sha256="18n9wqz82mjxjgzk8vc68kyz3b6lk21d2f16551d6fikjla03adf"; depends=[boot]; }; gbRd = derive { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; -gbm = derive { name="gbm"; version="2.1.1"; sha256="0jkjr09w9cgfb21aznvr9nivxjmj1zxfsl7gafy4mwh719jzygy0"; depends=[survival lattice]; }; +gbm = derive { name="gbm"; version="2.1.1"; sha256="0jkjr09w9cgfb21aznvr9nivxjmj1zxfsl7gafy4mwh719jzygy0"; depends=[lattice survival]; }; gbm2sas = derive { name="gbm2sas"; version="1.0"; sha256="0khw1nqc4yl2719h3zc70yl26s4lmngfz5iqw00pcv838z8myc0i"; depends=[gbm]; }; gbs = derive { name="gbs"; version="1.0"; sha256="19zcsvd258ibrj356zlwgryjqylcs56agg3z6d44xbnf8prg05ig"; depends=[nlme]; }; -gcbd = derive { name="gcbd"; version="0.2.5"; sha256="0fkg6vk0jkl6680n1hljyv783j4hd84mql0k4pfblvqafwv4nhm3"; depends=[RSQLite plyr reshape lattice]; }; +gcbd = derive { name="gcbd"; version="0.2.5"; sha256="0fkg6vk0jkl6680n1hljyv783j4hd84mql0k4pfblvqafwv4nhm3"; depends=[lattice plyr reshape RSQLite]; }; gcdnet = derive { name="gcdnet"; version="1.0.4"; sha256="0fmy0li06rahch4ir0xa81yilvrd0zqyhmpl4hfxjahhl3npw370"; depends=[Matrix]; }; gclus = derive { name="gclus"; version="1.3.1"; sha256="02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"; depends=[cluster]; }; -gcmr = derive { name="gcmr"; version="0.7.0"; sha256="17wv1qgshakn390719r8zzd8fbbvnkfjhlbcwk2rd2pic05x8msm"; depends=[nlme sandwich geoR betareg Formula car sp]; }; +gcmr = derive { name="gcmr"; version="0.7.5"; sha256="1z1hdgdasmw3drld8nmkw6cc1xls1gaaym1mlr8lyida4gb3giv8"; depends=[betareg car Formula geoR lmtest nlme sandwich sp]; }; gconcord = derive { name="gconcord"; version="0.41"; sha256="1n3pfwk6vip19q1zhbz1n164f9vi7mig8pcd07c4wxnm5ir9dagy"; depends=[]; }; gcookbook = derive { name="gcookbook"; version="1.0"; sha256="0hb52zfi5bl2j0h8lazz4gzhhcvpicb4ld6xm2vkvi4cj47piyy8"; depends=[]; }; -gdalUtils = derive { name="gdalUtils"; version="0.3.1"; sha256="1a6sg3x5yfffa9xrkvc98i2hm3lvna4jw7p89gn2bf74kzphqpmy"; depends=[sp foreach R_utils]; }; +gdalUtils = derive { name="gdalUtils"; version="0.3.1"; sha256="1a6sg3x5yfffa9xrkvc98i2hm3lvna4jw7p89gn2bf74kzphqpmy"; depends=[foreach R_utils sp]; }; gdata = derive { name="gdata"; version="2.16.1"; sha256="14ssq8z45zf1wwgfgxlc33i6hsdhc0b71kfncfclxz5ahxaqdkdm"; depends=[gtools]; }; -gdimap = derive { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[rgl oro_nifti movMF gridExtra colorspace geometry gsl abind]; }; -gdistance = derive { name="gdistance"; version="1.1-7"; sha256="1wcpjx76pnkpc6kmqx7bq73qbvzfzjb9s46qb7gi7kabpkya97il"; depends=[raster igraph Matrix sp]; }; -gdm = derive { name="gdm"; version="1.0"; sha256="08wafxvds4sxaxv7mbbkbzilkpfz1xnzdc5jdw3pldvmbgk861vd"; depends=[Rcpp raster reshape2 vegan plyr Rcpp]; }; +gdimap = derive { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; }; +gdistance = derive { name="gdistance"; version="1.1-7"; sha256="1wcpjx76pnkpc6kmqx7bq73qbvzfzjb9s46qb7gi7kabpkya97il"; depends=[igraph Matrix raster sp]; }; +gdm = derive { name="gdm"; version="1.0"; sha256="08wafxvds4sxaxv7mbbkbzilkpfz1xnzdc5jdw3pldvmbgk861vd"; depends=[plyr raster Rcpp reshape2 vegan]; }; gee = derive { name="gee"; version="4.13-18"; sha256="1s2cjgg4ypw72g710m93g6az763xz6sxw91nd6cwm5jjvr9vb91f"; depends=[]; }; -geeM = derive { name="geeM"; version="0.7.3"; sha256="15qbfki7ds75ws0ymwncr0y26ddnky5a882d7vh04145s1prl6xw"; depends=[Matrix]; }; +geeM = derive { name="geeM"; version="0.7.4"; sha256="0vxgwx6qx2xhhj217d6x7m5y89r0b9xxdd4k3sw0zgfga133ij7w"; depends=[Matrix]; }; geepack = derive { name="geepack"; version="1.2-0"; sha256="1pxh9nsyj9a40znm4zza4nbi3dkhb96s3azi43p9ivvfj3l21m74"; depends=[]; }; -geesmv = derive { name="geesmv"; version="1.0"; sha256="1xxsiz6rwqxx113vmlddx89g190nmv1yaimmibz8ai0sam5hqnp9"; depends=[nlme gee matrixcalc MASS]; }; +geesmv = derive { name="geesmv"; version="1.1"; sha256="1xijdjmkg6nw2y1556zbaic969dg23np0wrb9ncknsrhq4aa28pa"; depends=[gee MASS matrixcalc nlme]; }; geigen = derive { name="geigen"; version="1.5"; sha256="06k4fc7j8asqv1winmz28hb3r8fvlgikrvi064ysvj2fqwh7jnq1"; depends=[]; }; -geiger = derive { name="geiger"; version="2.0.3"; sha256="1wqihvscmq44i34205fzv79wk7j2a72qd8y6ycgrv74plql0316c"; depends=[ape MASS mvtnorm subplex deSolve digest Rcpp coda Rcpp]; }; -gelnet = derive { name="gelnet"; version="1.0"; sha256="06cyd5g5yxmyqiqjvp02f2k2ha50sk8qjqmmwcfxhaxysk9vbaag"; depends=[]; }; -gems = derive { name="gems"; version="1.0.0"; sha256="0h8z3ih24hxdv8bah4xf8f797pnwihby8hj93z6zw5sq9dyszxwa"; depends=[MASS msm plyr data_table]; }; -gemtc = derive { name="gemtc"; version="0.6-2"; sha256="0bkcbyh71aq3p7w75w78l472gfschfb2qf9wcv7s2vyy6ypbvh2q"; depends=[coda igraph meta XML plyr]; }; +geiger = derive { name="geiger"; version="2.0.3"; sha256="1wqihvscmq44i34205fzv79wk7j2a72qd8y6ycgrv74plql0316c"; depends=[ape coda deSolve digest MASS mvtnorm Rcpp subplex]; }; +gelnet = derive { name="gelnet"; version="1.1"; sha256="1d77v44azqpk6hzi7fl2ba6z3nyzh33xn0yp7ydp86nmf1gcgwlh"; depends=[]; }; +gems = derive { name="gems"; version="1.0.0"; sha256="0h8z3ih24hxdv8bah4xf8f797pnwihby8hj93z6zw5sq9dyszxwa"; depends=[data_table MASS msm plyr]; }; +gemtc = derive { name="gemtc"; version="0.6-2"; sha256="0bkcbyh71aq3p7w75w78l472gfschfb2qf9wcv7s2vyy6ypbvh2q"; depends=[coda igraph meta plyr XML]; }; gemtc_jar = derive { name="gemtc.jar"; version="0.14.3"; sha256="18hbiygpsv67flc4v6z6mir0rfq41v1vsh11dg9phmdr8bx4kcl1"; depends=[rJava]; }; genMOSS = derive { name="genMOSS"; version="1.2"; sha256="18qinckzz7wsw222skrq30izbj6s85i8hq6iicj9nng8gh6jydr8"; depends=[ROCR]; }; genMOSSplus = derive { name="genMOSSplus"; version="1.0"; sha256="1n3ngx1piy3l14k5k95wrgvrjw9238jkygfqanl3xg2na2mmkr26"; depends=[]; }; genSurv = derive { name="genSurv"; version="1.0.2"; sha256="0hvkrlcl8jrj0x0ixrl34484p9kxlwxfaa64ynz6jf3dcyghp9l0"; depends=[]; }; genalg = derive { name="genalg"; version="0.2.0"; sha256="1wzfamq8k5yhwbdx0wy1w5bks93brj0p890xxc4yqrja4w38ja3s"; depends=[]; }; -genasis = derive { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[Kendall fitdistrplus]; }; +genasis = derive { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; }; gendata = derive { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; }; gender = derive { name="gender"; version="0.4.3"; sha256="0dhwhv2b86arpmyr89g69h8ikw0f2x27ig420jngfb9gxljj9phc"; depends=[devtools dplyr httr jsonlite]; }; -genderizeR = derive { name="genderizeR"; version="1.1.0"; sha256="0hdphzmjqlzwk1gnhncidsdqrbc1lra3a4nl992ap9gfk890rvi4"; depends=[stringr httr tm data_table magrittr]; }; +genderizeR = derive { name="genderizeR"; version="1.1.0"; sha256="0hdphzmjqlzwk1gnhncidsdqrbc1lra3a4nl992ap9gfk890rvi4"; depends=[data_table httr magrittr stringr tm]; }; geneListPie = derive { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; -geneSignatureFinder = derive { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[survival cluster class]; }; +geneSignatureFinder = derive { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; genepi = derive { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genetics = derive { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; }; -genlasso = derive { name="genlasso"; version="1.3"; sha256="1q4ybg8xzphnqwywwdb7i2q94dlxwpggvisjqqdj39jh2cabda57"; depends=[MASS Matrix igraph]; }; +genlasso = derive { name="genlasso"; version="1.3"; sha256="1q4ybg8xzphnqwywwdb7i2q94dlxwpggvisjqqdj39jh2cabda57"; depends=[igraph MASS Matrix]; }; genoPlotR = derive { name="genoPlotR"; version="0.8.2"; sha256="0q12sg13yn5f3j5gk0qzszp81x52lpwpk3z4cg0bgxi9zbwmw467"; depends=[ade4]; }; -genpathmox = derive { name="genpathmox"; version="0.2"; sha256="1m08j10mrvkrnlgxbhjn3qmjz29p121fc4haww5qrici06nipfdm"; depends=[plspm quantreg mice diagram]; }; +genpathmox = derive { name="genpathmox"; version="0.2"; sha256="1m08j10mrvkrnlgxbhjn3qmjz29p121fc4haww5qrici06nipfdm"; depends=[diagram mice plspm quantreg]; }; genridge = derive { name="genridge"; version="0.6-5"; sha256="0ms8n1yrga5qqg9ni41ifyw6320aajyrwvjh6d27q1k96j2dicp4"; depends=[car]; }; gensemble = derive { name="gensemble"; version="1.0"; sha256="0yyi7djzqx4yhxp6yy1rjgvzidjlna79ds89bgj6m6zj3aav6yw2"; depends=[]; }; geoBayes = derive { name="geoBayes"; version="0.2.150402"; sha256="123b2xds69clkgjvczkdbl673cahmiprrr1cki2alspryy37icar"; depends=[coda sp]; }; -geoCount = derive { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp Rcpp RcppArmadillo]; }; -geoR = derive { name="geoR"; version="1.7-5.1"; sha256="10rxlvlsg2avrf63p03a22lnq4ysyc4zq06mxidkjpviwk1kvzqy"; depends=[MASS sp splancs RandomFields]; }; +geoCount = derive { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp RcppArmadillo]; }; +geoR = derive { name="geoR"; version="1.7-5.1"; sha256="10rxlvlsg2avrf63p03a22lnq4ysyc4zq06mxidkjpviwk1kvzqy"; depends=[MASS RandomFields sp splancs]; }; geoRglm = derive { name="geoRglm"; version="0.9-8"; sha256="1zncqsw62m0p4a1wchhb8xsf0152z2xxk3c4xqdr5wbzxf32jhvh"; depends=[geoR sp]; }; geocodeHERE = derive { name="geocodeHERE"; version="0.1.2"; sha256="0sr8r6f41bpi0rncjcf0aydda68wnsrbmqzsgc1f1has2rb1g9p0"; depends=[httr]; }; -geojsonio = derive { name="geojsonio"; version="0.1.0"; sha256="17nv7xn80sf2nn6fvmlbnbcgg66n6bh8x725wdfnhk3gg1rb64g5"; depends=[sp rgdal rgeos httr maptools jsonlite magrittr V8]; }; +geojsonio = derive { name="geojsonio"; version="0.1.0"; sha256="17nv7xn80sf2nn6fvmlbnbcgg66n6bh8x725wdfnhk3gg1rb64g5"; depends=[httr jsonlite magrittr maptools rgdal rgeos sp V8]; }; geomapdata = derive { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geometry = derive { name="geometry"; version="0.3-5"; sha256="1x1dhdbqnq1wi1r4njj3l1g8yag2dig19rna3a5pwf1j1gxbl0i8"; depends=[magic]; }; -geomorph = derive { name="geomorph"; version="2.1.4"; sha256="19zf9g0lpkrdl3pkkjryzas42h3ng9q01ap182xxd36vr8p55sd8"; depends=[rgl jpeg ape geiger phytools]; }; +geomorph = derive { name="geomorph"; version="2.1.5"; sha256="0xys2gwin16h4ahcjy3m49sslypilxlcgrnky19vv4aagrydq776"; depends=[ape geiger jpeg phytools rgl]; }; geonames = derive { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; }; -geophys = derive { name="geophys"; version="1.3-8"; sha256="0nw4m30r46892cf1n575jkfjgdjc14wic9xzmzcnskbk8cd50hp2"; depends=[RPMG RSEIS RFOC GEOmap cluster]; }; -georob = derive { name="georob"; version="0.1-5"; sha256="0awcqcpv82pn2z7lgir73pg2b0whvrrfy55gi0jrjn7lzyakhqaq"; depends=[sp constrainedKriging lmtest nlme nleqslv quantreg RandomFields robustbase snowfall]; }; -geoscale = derive { name="geoscale"; version="1.1"; sha256="1xmn8y33jz1f16sjbzrld20gy7w54awrr79lhs9s4r8k1gmn0zqg"; depends=[]; }; -geospacom = derive { name="geospacom"; version="0.5-7"; sha256="00yi2wwnjh2z8xhzfbp1jhh5fhq2z885s0gv937xsin4a63m76fd"; depends=[rgeos classInt sp maptools geosphere]; }; +geophys = derive { name="geophys"; version="1.3-8"; sha256="0nw4m30r46892cf1n575jkfjgdjc14wic9xzmzcnskbk8cd50hp2"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; +georob = derive { name="georob"; version="0.1-5"; sha256="0awcqcpv82pn2z7lgir73pg2b0whvrrfy55gi0jrjn7lzyakhqaq"; depends=[constrainedKriging lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; +geoscale = derive { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; +geospacom = derive { name="geospacom"; version="0.5-7"; sha256="00yi2wwnjh2z8xhzfbp1jhh5fhq2z885s0gv937xsin4a63m76fd"; depends=[classInt geosphere maptools rgeos sp]; }; geosphere = derive { name="geosphere"; version="1.3-13"; sha256="124l1mfqf4qq5qsa0k3r5hkky9q2m2waq2rp4xcym49wr3jysf6c"; depends=[sp]; }; -geospt = derive { name="geospt"; version="1.0-1"; sha256="1nv5wn8s4vlbyyzi8is7zsa1vrijp1va0vhi8l2yny8fh22qhjij"; depends=[gstat genalg MASS sp minqa limSolve fields gsl plyr TeachingDemos sgeostat]; }; -geostatsp = derive { name="geostatsp"; version="1.2.1"; sha256="0p93b8mmjsqg7qg1c6v7c5ism8jqf7w21rydck7agh4i64q47s7y"; depends=[Matrix raster sp abind numDeriv pracma]; }; +geospt = derive { name="geospt"; version="1.0-1"; sha256="1nv5wn8s4vlbyyzi8is7zsa1vrijp1va0vhi8l2yny8fh22qhjij"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; +geostatsp = derive { name="geostatsp"; version="1.2.1"; sha256="0p93b8mmjsqg7qg1c6v7c5ism8jqf7w21rydck7agh4i64q47s7y"; depends=[abind Matrix numDeriv pracma raster sp]; }; geotools = derive { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; -geotopbricks = derive { name="geotopbricks"; version="1.3.6"; sha256="1c4v590r27lsz2ld2dsi9dv7fsbfklyqgsjvcrbk4di18nc1hygp"; depends=[raster stringr zoo rgdal]; }; +geotopbricks = derive { name="geotopbricks"; version="1.3.6"; sha256="1c4v590r27lsz2ld2dsi9dv7fsbfklyqgsjvcrbk4di18nc1hygp"; depends=[raster rgdal stringr zoo]; }; geozoo = derive { name="geozoo"; version="0.4.3"; sha256="0nmmmyk0ih5aqpsn7ip4dhgfm7jhcnca8pigyr9794b110icq1rv"; depends=[bitops]; }; getopt = derive { name="getopt"; version="1.20.0"; sha256="00f57vgnzmg7cz80rjmjz1556xqcmx8nhrlbbhaq4w7gl2ibl87r"; depends=[]; }; gets = derive { name="gets"; version="0.2"; sha256="0vdg8g588asyzkld9v3rmscx3k727ncxnjzi8qxinlr2zhw9nbcq"; depends=[zoo]; }; gettingtothebottom = derive { name="gettingtothebottom"; version="3.2"; sha256="1cz2vidh7k346qc38wszs2dg6lvya249hvcsn6zdpbx0c0qs3y72"; depends=[ggplot2 Matrix]; }; -gfcanalysis = derive { name="gfcanalysis"; version="1.2"; sha256="147vgv4z14xn0j94g7z0y099gz8xj2yb02r6j3mfi4412dg5f5fp"; depends=[raster rgdal geosphere RCurl rgeos plyr ggplot2 sp stringr animation rasterVis]; }; -ggExtra = derive { name="ggExtra"; version="0.1.0"; sha256="12b2bd8n3hyp5azdxh14dslq6mwaplvxph90dhiydkhzmya27i7i"; depends=[ggplot2]; }; +gfcanalysis = derive { name="gfcanalysis"; version="1.2"; sha256="147vgv4z14xn0j94g7z0y099gz8xj2yb02r6j3mfi4412dg5f5fp"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; +ggExtra = derive { name="ggExtra"; version="0.1.5.2"; sha256="0lad58245x5gn1yqx65rqpbjwy17yrisns6lqnaw5w1ff5bh7s9i"; depends=[ggplot2]; }; ggROC = derive { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; -ggRandomForests = derive { name="ggRandomForests"; version="1.1.4"; sha256="0h55593mr2x0kvp97rrm1spj17zbr1p9pqrpngsxmp11iahhccqh"; depends=[randomForestSRC ggplot2 survival reshape2]; }; -ggdendro = derive { name="ggdendro"; version="0.1-15"; sha256="1xa1pswkf7xnrxs1zqw71ws0r6r0nmc2gnc76bd372czfdn4npci"; depends=[MASS ggplot2]; }; +ggRandomForests = derive { name="ggRandomForests"; version="1.1.4"; sha256="0h55593mr2x0kvp97rrm1spj17zbr1p9pqrpngsxmp11iahhccqh"; depends=[ggplot2 randomForestSRC reshape2 survival]; }; +ggdendro = derive { name="ggdendro"; version="0.1-15"; sha256="1xa1pswkf7xnrxs1zqw71ws0r6r0nmc2gnc76bd372czfdn4npci"; depends=[ggplot2 MASS]; }; ggenealogy = derive { name="ggenealogy"; version="0.1.0"; sha256="0shy6ylrx49yccyydhahqk1nnljqgf1cm11fl4cmb44la5zd3wjn"; depends=[ggplot2 igraph plyr reshape2]; }; gglasso = derive { name="gglasso"; version="1.3"; sha256="0qqp5zak4xsakhydn9cfhpb19n6yidgqj183il1v7yi90qjfyn66"; depends=[]; }; ggm = derive { name="ggm"; version="2.3"; sha256="1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3"; depends=[igraph]; }; -ggmap = derive { name="ggmap"; version="2.4"; sha256="06mdczacjnlzyr5sm1d099sqyf6anhlnn2bnjxni8h36100m5nm2"; depends=[ggplot2 proto scales RgoogleMaps png plyr reshape2 rjson mapproj jpeg geosphere digest]; }; -ggmcmc = derive { name="ggmcmc"; version="0.6"; sha256="12z0six1swpmisbm8x9a9dk19cd0f9yvzm92gc9qs484ihpcscvq"; depends=[dplyr tidyr ggplot2]; }; -ggparallel = derive { name="ggparallel"; version="0.1.1"; sha256="1z8w4bm4ahmmwbr87qlqhm8jlrqf7dhdvm1cf0xrwjlkmy6dqjvg"; depends=[ggplot2 reshape2 plyr]; }; -ggplot2 = derive { name="ggplot2"; version="1.0.1"; sha256="0794kjqi3lrxb33lr1mykd58959hlgkhdn259vj8fxrh65mqw920"; depends=[plyr digest gtable reshape2 scales proto MASS]; }; +ggmap = derive { name="ggmap"; version="2.4"; sha256="06mdczacjnlzyr5sm1d099sqyf6anhlnn2bnjxni8h36100m5nm2"; depends=[digest geosphere ggplot2 jpeg mapproj plyr png proto reshape2 RgoogleMaps rjson scales]; }; +ggmcmc = derive { name="ggmcmc"; version="0.6"; sha256="12z0six1swpmisbm8x9a9dk19cd0f9yvzm92gc9qs484ihpcscvq"; depends=[dplyr ggplot2 tidyr]; }; +ggparallel = derive { name="ggparallel"; version="0.1.1"; sha256="1z8w4bm4ahmmwbr87qlqhm8jlrqf7dhdvm1cf0xrwjlkmy6dqjvg"; depends=[ggplot2 plyr reshape2]; }; +ggplot2 = derive { name="ggplot2"; version="1.0.1"; sha256="0794kjqi3lrxb33lr1mykd58959hlgkhdn259vj8fxrh65mqw920"; depends=[digest gtable MASS plyr proto reshape2 scales]; }; ggsubplot = derive { name="ggsubplot"; version="0.3.2"; sha256="1rrq47rf95hnwz8c33sbnpvc37sb6v2w37863hyjl6gc0bhyrvzb"; depends=[ggplot2 plyr proto scales stringr]; }; ggswissmaps = derive { name="ggswissmaps"; version="0.0.2"; sha256="1cl8m9j3d2kf8dbpq09q36v7nwkgz7khqds431l0kmkzq02qhddf"; depends=[ggplot2]; }; -ggtern = derive { name="ggtern"; version="1.0.5.0"; sha256="0ykgz3268381glkrv1gbn9qnyrkxsmihc3srv8zrldbq18zbr0a8"; depends=[ggplot2 plyr gtable scales reshape2 proto MASS sp]; }; -ggthemes = derive { name="ggthemes"; version="2.1.2"; sha256="049fjk0f960sjsnqns2kgk7dvr6jr5rrpxgl8qbxx4idz95bvdi7"; depends=[ggplot2 colorspace proto scales]; }; -ggvis = derive { name="ggvis"; version="0.4.1"; sha256="1sl6ygglgsg7xhzzkxaap8pzb2zmfw0y481w7r7s1nyg7pdgr0r2"; depends=[assertthat jsonlite shiny magrittr dplyr lazyeval htmltools]; }; -ghyp = derive { name="ghyp"; version="1.5.6"; sha256="0y3915jxb2rf01f7r6111p88ijhmzyz4qsmy7vfijlilkz0ynn20"; depends=[numDeriv gplots]; }; +ggtern = derive { name="ggtern"; version="1.0.5.0"; sha256="0ykgz3268381glkrv1gbn9qnyrkxsmihc3srv8zrldbq18zbr0a8"; depends=[ggplot2 gtable MASS plyr proto reshape2 scales sp]; }; +ggthemes = derive { name="ggthemes"; version="2.1.2"; sha256="049fjk0f960sjsnqns2kgk7dvr6jr5rrpxgl8qbxx4idz95bvdi7"; depends=[colorspace ggplot2 proto scales]; }; +ggvis = derive { name="ggvis"; version="0.4.2"; sha256="07arzhczvh2sgqv9h30n32s6l2a3rc98rid2fpz6kp7vlin2pk1g"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; +ghyp = derive { name="ghyp"; version="1.5.6"; sha256="0y3915jxb2rf01f7r6111p88ijhmzyz4qsmy7vfijlilkz0ynn20"; depends=[gplots numDeriv]; }; giRaph = derive { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; gibbs_met = derive { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; gimme = derive { name="gimme"; version="0.1-1"; sha256="1snzlwq6d86ygpn778m3inlfqpymp0l05pdlrdkm8ip4wgir0hvs"; depends=[lavaan qgraph]; }; -gistr = derive { name="gistr"; version="0.2.0"; sha256="1812qh3f4nwbpqaiq4gfkalfckwqvn84j7v7qfj69gd4jzxcwywz"; depends=[jsonlite httr magrittr assertthat knitr rmarkdown dplyr]; }; +gistr = derive { name="gistr"; version="0.2.0"; sha256="1812qh3f4nwbpqaiq4gfkalfckwqvn84j7v7qfj69gd4jzxcwywz"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; git2r = derive { name="git2r"; version="0.10.1"; sha256="1damlhxf3ma0flqw4am42wj2dxk3m232wh0wpl1ikgx0dcfn9l8f"; depends=[]; }; -gitter = derive { name="gitter"; version="1.0.4"; sha256="1pvl8k8mb15mcfz1074y246s9basmi5vbpw2n1ca0d8wm5wdidap"; depends=[jpeg tiff logging PET ggplot2]; }; +gitter = derive { name="gitter"; version="1.0.4"; sha256="1pvl8k8mb15mcfz1074y246s9basmi5vbpw2n1ca0d8wm5wdidap"; depends=[EBImage ggplot2 jpeg logging PET tiff]; }; glarma = derive { name="glarma"; version="1.3-0"; sha256="0fp354zxkddc4giynhwjlf9mg4sklcmqi0gdn8nxm1pkdpb86rba"; depends=[MASS]; }; glasso = derive { name="glasso"; version="1.8"; sha256="0gcapw7kyxb19wvdyxq1vsmc5j7yyd0rvqxs2i71k31q352sg6zw"; depends=[]; }; -glassomix = derive { name="glassomix"; version="1.2"; sha256="13a2ly0by58z8djq8nbakpyacgb6nkdsqxjq44yw4v2fy3s22z3n"; depends=[mvtnorm glasso huge]; }; +glassomix = derive { name="glassomix"; version="1.2"; sha256="13a2ly0by58z8djq8nbakpyacgb6nkdsqxjq44yw4v2fy3s22z3n"; depends=[glasso huge mvtnorm]; }; glba = derive { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; -glcm = derive { name="glcm"; version="1.2"; sha256="00bkhd4arvg7ahdr5kfvran46b2sywv9i0rlwalx9pmyvjwnzm5b"; depends=[Rcpp Rcpp RcppArmadillo]; }; +glcm = derive { name="glcm"; version="1.2"; sha256="00bkhd4arvg7ahdr5kfvran46b2sywv9i0rlwalx9pmyvjwnzm5b"; depends=[Rcpp RcppArmadillo]; }; gld = derive { name="gld"; version="2.2.1"; sha256="1x9xlqj87xmk90hn20k1yvnvyndxdbi67yrxrfdhr3lhxabq5msw"; depends=[]; }; gldist = derive { name="gldist"; version="2160.2"; sha256="1dcf3pb4xqvhqj4m3xc3ihzjbzxjspjrnc8819hmlnmdd0csghmx"; depends=[]; }; glinternet = derive { name="glinternet"; version="1.0.0"; sha256="0aa75xq2w64iknbyl6qw9ckk8v64a96xz0ar1mbqd8zhx0xvibyy"; depends=[]; }; @@ -3728,31 +3808,32 @@ gllm = derive { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2i glm2 = derive { name="glm2"; version="1.1.2"; sha256="1x9pq2ddsz9al8w044qch34s3fahca63dz85lvm5qn16945ccw1s"; depends=[]; }; glmc = derive { name="glmc"; version="0.2-4"; sha256="03m1ym9w0b0gqib13pnh1yrjijlcwsn5lijg0nsr4hd6gxw29cla"; depends=[emplik]; }; glmdm = derive { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; }; -glmgraph = derive { name="glmgraph"; version="1.0.1"; sha256="1jzkz2lri7nbxxkryhf95503wd651ic59h6iafkx9ahwpmibyv4l"; depends=[Rcpp Rcpp RcppArmadillo]; }; +glmgraph = derive { name="glmgraph"; version="1.0.1"; sha256="1jzkz2lri7nbxxkryhf95503wd651ic59h6iafkx9ahwpmibyv4l"; depends=[Rcpp RcppArmadillo]; }; glmlep = derive { name="glmlep"; version="0.1"; sha256="0jnm3cf2r9fyncxzpk87g4pnxbryqcxxrc5y2a80pv48al3sxlzk"; depends=[]; }; -glmm = derive { name="glmm"; version="1.0.3"; sha256="0bs543x9czg8mbgpy0zhgnfll2nrmj8xz5kwkddf3k6hp859h0v8"; depends=[trust mvtnorm Matrix]; }; -glmmBUGS = derive { name="glmmBUGS"; version="2.3"; sha256="1j96c1c2lqplhjvyigpj494yxj85bpmc7cnd1hl1rc8b552jr192"; depends=[MASS abind]; }; +glmm = derive { name="glmm"; version="1.0.3"; sha256="0bs543x9czg8mbgpy0zhgnfll2nrmj8xz5kwkddf3k6hp859h0v8"; depends=[Matrix mvtnorm trust]; }; +glmmBUGS = derive { name="glmmBUGS"; version="2.3"; sha256="1j96c1c2lqplhjvyigpj494yxj85bpmc7cnd1hl1rc8b552jr192"; depends=[abind MASS]; }; glmmGS = derive { name="glmmGS"; version="0.5-1"; sha256="1aqyxw3nrjri8k8wlwvddy25dj7mjqndssd5p5arax8vaqgrdnjz"; depends=[]; }; glmmLasso = derive { name="glmmLasso"; version="1.3.4"; sha256="14x74640vvyrg72pq19gqb8db7wq97xhc30iakh84fdh1llyykpn"; depends=[minqa]; }; glmmML = derive { name="glmmML"; version="1.0"; sha256="0b1q5mj325xga3lfks28r03363bjfa31rlgjzwk4s0a6g21bdl4a"; depends=[]; }; -glmnet = derive { name="glmnet"; version="2.0-2"; sha256="1nfbh1y41ly09lcdb5z02dy8l4qkll21yicmwg25wlkzk5sxb3z3"; depends=[Matrix foreach]; }; +glmnet = derive { name="glmnet"; version="2.0-2"; sha256="1nfbh1y41ly09lcdb5z02dy8l4qkll21yicmwg25wlkzk5sxb3z3"; depends=[foreach Matrix]; }; glmnetcr = derive { name="glmnetcr"; version="1.0.2"; sha256="1pyg23hdqksiaqdcrsaqz9vb7mgclm41hh0vb7ndkdv284bzzlbz"; depends=[glmnet]; }; glmpath = derive { name="glmpath"; version="0.97"; sha256="054v188ffjl6x11cld5s9py22kxcs0iq58x4yhxb0ny7mbma5hkn"; depends=[survival]; }; glmpathcr = derive { name="glmpathcr"; version="1.0.3"; sha256="0qa63c7kwpxf6smczgzf4fmvczw1ynqq5vgcw3bxdbs37q4ypj8n"; depends=[glmpath mvtnorm]; }; glmulti = derive { name="glmulti"; version="1.0.7"; sha256="154s72sjp6pz7ki7s4mgn5v62j7h0lfz9mngf40wvmy31da2s8ix"; depends=[rJava]; }; -glmvsd = derive { name="glmvsd"; version="1.2"; sha256="0p99sanr95vcjfyjx7khwd1l59d319j1i49iv3isgsh3fwikhpgf"; depends=[glmnet ncvreg MASS]; }; -glmx = derive { name="glmx"; version="0.1-0"; sha256="0i0p1xk5yk1l274gfr4ijmqnnbq7yyzmi577pb7igwvi3hjn7g7k"; depends=[MASS Formula lmtest sandwich]; }; +glmvsd = derive { name="glmvsd"; version="1.2"; sha256="0p99sanr95vcjfyjx7khwd1l59d319j1i49iv3isgsh3fwikhpgf"; depends=[glmnet MASS ncvreg]; }; +glmx = derive { name="glmx"; version="0.1-0"; sha256="0i0p1xk5yk1l274gfr4ijmqnnbq7yyzmi577pb7igwvi3hjn7g7k"; depends=[Formula lmtest MASS sandwich]; }; globalGSA = derive { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; globalOptTests = derive { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globalboosttest = derive { name="globalboosttest"; version="1.1-0"; sha256="1k7kgnday27sn6s1agzlj94asww81655d2zprx6qg7liv677bxvf"; depends=[mboost survival]; }; -glogis = derive { name="glogis"; version="1.0-0"; sha256="19h0d3x5lcjipkdvx4ppq5lyj2xzizayidx0gjg9ggb1qljpyw9m"; depends=[zoo sandwich]; }; +globals = derive { name="globals"; version="0.3.1"; sha256="1fjbs75m07r8gvj5pjqj8dv1xm558h4g2cpg5l1psqzs567gkcxv"; depends=[codetools]; }; +glogis = derive { name="glogis"; version="1.0-0"; sha256="19h0d3x5lcjipkdvx4ppq5lyj2xzizayidx0gjg9ggb1qljpyw9m"; depends=[sandwich zoo]; }; glpkAPI = derive { name="glpkAPI"; version="1.3.0"; sha256="0173wljx13jali2jxz4k5za89hc64n2j9djz5bcryrqhq4rmkp87"; depends=[]; }; glrt = derive { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; -gmailr = derive { name="gmailr"; version="0.6.0"; sha256="1l0lnlq5vrxrab8d9b5hwm8krg8zgx8f8m0kfnryyyrqkjrksky5"; depends=[httr base64enc magrittr jsonlite mime]; }; +gmailr = derive { name="gmailr"; version="0.6.0"; sha256="1l0lnlq5vrxrab8d9b5hwm8krg8zgx8f8m0kfnryyyrqkjrksky5"; depends=[base64enc httr jsonlite magrittr mime]; }; gmatrix = derive { name="gmatrix"; version="0.2"; sha256="1w83m6q8xflifqqgkkg2my4fkjfjyv0qq4ly8yqk12k77lb03hxq"; depends=[]; }; gmm = derive { name="gmm"; version="1.5-2"; sha256="1phd8mmfyhjb72a45gavckb3g8qi927hdq0i8c7iw1d28f04lc70"; depends=[sandwich]; }; -gmnl = derive { name="gmnl"; version="1.0"; sha256="1nvk6x5412bfqdg54051hnisbnfm3d4yv9l2568jcz49pa8lay4d"; depends=[maxLik Formula plotrix msm mlogit truncnorm]; }; -gmodels = derive { name="gmodels"; version="2.15.4.1"; sha256="1yizjw181bg0ml6j96calflz3k3wpvpxh61hfd3pdba013ixjib5"; depends=[MASS gdata]; }; +gmnl = derive { name="gmnl"; version="1.1"; sha256="1dz7fhacys88hpf13pbqc9ba37qhwspq7j5zqfy1bg4py1hsx1q7"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; +gmodels = derive { name="gmodels"; version="2.15.4.1"; sha256="1yizjw181bg0ml6j96calflz3k3wpvpxh61hfd3pdba013ixjib5"; depends=[gdata MASS]; }; gmp = derive { name="gmp"; version="0.5-12"; sha256="10fpvcli526a8j6jaryn0mwk78c24xy7whdpcvqzzvb41l6nnkma"; depends=[]; }; gmt = derive { name="gmt"; version="1.2-0"; sha256="09az2iwwhyrls4mr619vwzhzmaks6klm67lnir48bh40hynsvibp"; depends=[]; }; gnm = derive { name="gnm"; version="1.0-8"; sha256="1581lzkb1v3y0arrq7x1bg7c91cii87bifxcdi1jzyc5rxj261la"; depends=[MASS Matrix nnet qvcalc relimp]; }; @@ -3762,78 +3843,79 @@ goalprog = derive { name="goalprog"; version="1.0-2"; sha256="1h3nd3d53hbz5hl349 gof = derive { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp5jpyml8ybn7xqswp8am82vpg"; depends=[]; }; goft = derive { name="goft"; version="1.1"; sha256="19mb2i2iri09v2dgkyl1ral2m7bzyizncnz24niwg13afpwbq12h"; depends=[gPdtest mvShapiroTest]; }; goftest = derive { name="goftest"; version="1.0-2"; sha256="11xw0cfj71z5smywsds9ijbhf3glxkqnhxmwwdqkv4gjrrr2y1bv"; depends=[]; }; -gogarch = derive { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fGarch fastICA]; }; +gogarch = derive { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; gooJSON = derive { name="gooJSON"; version="1.0.01"; sha256="02sldh5lsrjprc9mbf99jyid7ij62db5f1h60z719gxl4pk6fjms"; depends=[rjson]; }; googleVis = derive { name="googleVis"; version="0.5.8"; sha256="185pp2sgdw81p9vjkxzx4nrv9fp9jw24mqng7k98ql98p3kw9y21"; depends=[RJSONIO]; }; -goric = derive { name="goric"; version="0.0-8"; sha256="0ayac0yfkxrl13ckc2pwfqnmsrhmbg5bi6iwzx0fmh81vrlp0zrm"; depends=[nlme quadprog mvtnorm MASS Matrix]; }; +goric = derive { name="goric"; version="0.0-8"; sha256="0ayac0yfkxrl13ckc2pwfqnmsrhmbg5bi6iwzx0fmh81vrlp0zrm"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; govStatJPN = derive { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; -gpairs = derive { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode lattice vcd MASS colorspace]; }; +gpairs = derive { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode colorspace lattice MASS vcd]; }; gpclib = derive { name="gpclib"; version="1.5-5"; sha256="08j81b8wymsgin20n54gvm6m54rmdic51p6qzs9cz4pmgl7dkkjv"; depends=[]; }; gpk = derive { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplm = derive { name="gplm"; version="0.7-2"; sha256="0pr39fbkv61iwd110lq76p2fi4dvx9qz6mjsvg6bpja9pfbb6wc0"; depends=[AER]; }; -gplots = derive { name="gplots"; version="2.17.0"; sha256="0dyysysl595khv00m4h68s7zx7xlfnpxzfkc49av1s3fc58bvmr5"; depends=[gtools gdata caTools KernSmooth]; }; -gpmap = derive { name="gpmap"; version="0.1.1"; sha256="00jhslbxbp6dgq7bw346hfpw0gans048vsn7chyzjhyr7ah5xrfg"; depends=[isotone plyr ggplot2 foreach]; }; +gplots = derive { name="gplots"; version="2.17.0"; sha256="0dyysysl595khv00m4h68s7zx7xlfnpxzfkc49av1s3fc58bvmr5"; depends=[caTools gdata gtools KernSmooth]; }; +gpmap = derive { name="gpmap"; version="0.1.1"; sha256="00jhslbxbp6dgq7bw346hfpw0gans048vsn7chyzjhyr7ah5xrfg"; depends=[foreach ggplot2 isotone plyr]; }; gpr = derive { name="gpr"; version="1.1"; sha256="03ywik11kc6cnaqrzzzi94jkrdbd378m3sf26f2vpb7d834nl728"; depends=[]; }; -gptk = derive { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[Matrix fields]; }; +gptk = derive { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; gputools = derive { name="gputools"; version="0.28"; sha256="0ria03ggcfqgn93gjv2anhvkd3k73c6vfwgka16kf66g1nfzxs4l"; depends=[]; }; grImport = derive { name="grImport"; version="0.9-0"; sha256="1d8fd7502qj7cirjqdkr1qj51rylw2fz5hs06avfvc2dxs2xwfw1"; depends=[XML]; }; grade = derive { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; gramEvol = derive { name="gramEvol"; version="2.0-2"; sha256="1xrn5gkr9rxw53i5l2sqcgai9q0w4kyrychf0nq17cvcynw1y1lx"; depends=[]; }; granova = derive { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; }; -granovaGG = derive { name="granovaGG"; version="1.3"; sha256="1bsxad2h7rmbkmmg5zx6wbpws62dmp7n905gnp17n8cl8c6w2jp9"; depends=[ggplot2 RColorBrewer plyr gridExtra reshape2]; }; -graphicalVAR = derive { name="graphicalVAR"; version="0.1.2"; sha256="0vc2x58z4w1hhvkqpxya3wr78p2b1irfyivc7njxw8a2595rc347"; depends=[Rcpp Matrix glasso glmnet mvtnorm qgraph Rcpp RcppArmadillo]; }; +granovaGG = derive { name="granovaGG"; version="1.3"; sha256="1bsxad2h7rmbkmmg5zx6wbpws62dmp7n905gnp17n8cl8c6w2jp9"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; +graphicalVAR = derive { name="graphicalVAR"; version="0.1.2"; sha256="0vc2x58z4w1hhvkqpxya3wr78p2b1irfyivc7njxw8a2595rc347"; depends=[glasso glmnet Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; graphicsQC = derive { name="graphicsQC"; version="1.0-6"; sha256="07kzz0r8rh4m7qqxnlab0d4prr56jz5kspx782byspkcm5l4xrsl"; depends=[XML]; }; -graphscan = derive { name="graphscan"; version="1.0"; sha256="15kdpp2k2gpfr8qq6wr08gva5hlxqha2h48zi1j3p6r766j07082"; depends=[ape sp snowfall rgl]; }; -greport = derive { name="greport"; version="0.5-3"; sha256="0cd7rqzrk1yb22ksbmva1fl9k388bxxm586c20j8k8z5zympi9g1"; depends=[Hmisc data_table rms lattice latticeExtra ggplot2 Formula survival]; }; +graphscan = derive { name="graphscan"; version="1.0"; sha256="15kdpp2k2gpfr8qq6wr08gva5hlxqha2h48zi1j3p6r766j07082"; depends=[ape rgl snowfall sp]; }; +greport = derive { name="greport"; version="0.5-3"; sha256="0cd7rqzrk1yb22ksbmva1fl9k388bxxm586c20j8k8z5zympi9g1"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; +greyzoneSurv = derive { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; gridBase = derive { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridDebug = derive { name="gridDebug"; version="0.4-0"; sha256="1nbcdjip6ghnlv0j7cf45bpqdpirwn636pg324f0hgiqj4rifn09"; depends=[gridGraphviz gridSVG]; }; gridExtra = derive { name="gridExtra"; version="0.9.1"; sha256="15pj5w5wlrf8gw4z01i9j88gk6bm4kni64fpip9icmxkn887y3hx"; depends=[]; }; gridGraphics = derive { name="gridGraphics"; version="0.1-3"; sha256="09ml9vy4lz0q235xy2m5l8qd3rb3r73gf3bwz35dgn7qcxps8jjp"; depends=[]; }; -gridGraphviz = derive { name="gridGraphviz"; version="0.1"; sha256="14zcr0w2c9cgdw6ij93w52k3bkmgdmx809snh9jjf2amy08p2gbg"; depends=[]; }; +gridGraphviz = derive { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; gridSVG = derive { name="gridSVG"; version="1.4-3"; sha256="1jgrhckjbvccp5zqbkkiw9glhdljwxlc8kkr1fgkbrwmsi053iwk"; depends=[RJSONIO XML]; }; grnn = derive { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; }; -groc = derive { name="groc"; version="1.0.5"; sha256="1kqcdyq1y80gd62jpn38yz6q1qmg84b7k8qcniip5h948vfzkddg"; depends=[rrcov pls mgcv robust robustbase MASS]; }; +groc = derive { name="groc"; version="1.0.5"; sha256="1kqcdyq1y80gd62jpn38yz6q1qmg84b7k8qcniip5h948vfzkddg"; depends=[MASS mgcv pls robust robustbase rrcov]; }; grofit = derive { name="grofit"; version="1.1.1-1"; sha256="1rnym5fxbg3bin2idmymrwvf1fcd646bipbgjd6wby8my69zy4c5"; depends=[]; }; +gromovlab = derive { name="gromovlab"; version="0.6-16"; sha256="0ndi4i91fnndvpp3xmr405a62vq5gjagw2qrvcmq1q6cgg7bj17q"; depends=[cluster glpkAPI igraph phangorn quadprog]; }; groupRemMap = derive { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; grouped = derive { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; -growcurves = derive { name="growcurves"; version="0.2.3.9"; sha256="1f8hh8ppp6bgrb8crm46xrria3vdnz62aya9lhwcdaggfmy7j25l"; depends=[Rcpp RcppArmadillo reshape2 scales ggplot2 Formula testthat Rcpp RcppArmadillo]; }; -growfunctions = derive { name="growfunctions"; version="0.11"; sha256="087qpykjj46a5zp48dx59k51mdyqckc39zgmrnhc5rhgm5df8sv3"; depends=[Rcpp Matrix spam mvtnorm ggplot2 reshape2 scales Rcpp RcppArmadillo]; }; +growcurves = derive { name="growcurves"; version="0.2.3.9"; sha256="1f8hh8ppp6bgrb8crm46xrria3vdnz62aya9lhwcdaggfmy7j25l"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2 scales testthat]; }; +growfunctions = derive { name="growfunctions"; version="0.11"; sha256="087qpykjj46a5zp48dx59k51mdyqckc39zgmrnhc5rhgm5df8sv3"; depends=[ggplot2 Matrix mvtnorm Rcpp RcppArmadillo reshape2 scales spam]; }; growthmodels = derive { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; -growthrate = derive { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[Matrix clime mvtnorm]; }; +growthrate = derive { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; grplasso = derive { name="grplasso"; version="0.4-5"; sha256="15bqckq9qjdlllhfpb21vzgi9msbl544alkrz01w1vvb3hk1847y"; depends=[]; }; grppenalty = derive { name="grppenalty"; version="2.1-0"; sha256="12hbghmg96dwlscjy6nspgkmqqj4vwq2qcwcz1gp50a08qbmdcrk"; depends=[]; }; -grpreg = derive { name="grpreg"; version="2.8-0"; sha256="1mfd3hzzv720zhl8s6ghw0vfpqkz8q050dwnvmmb0smhdvahd2zj"; depends=[Matrix]; }; -grt = derive { name="grt"; version="0.2"; sha256="0cqjk7yqk2ryx1pgvjd3x8l25hqv92p8rvdr7xw4jkzillllwmhz"; depends=[MASS rgl misc3d]; }; -gsDesign = derive { name="gsDesign"; version="2.9-3"; sha256="0dd96hciiksf436lpm1q35in06b82p4h09spklf28n0p5hgc9225"; depends=[ggplot2 xtable stringr RUnit plyr]; }; +grpreg = derive { name="grpreg"; version="2.8-1"; sha256="0n6j4mx2f0khdqz7c7yhmsh6gcxha2ypknqa421qir1nvp0x57c9"; depends=[Matrix]; }; +grt = derive { name="grt"; version="0.2"; sha256="0cqjk7yqk2ryx1pgvjd3x8l25hqv92p8rvdr7xw4jkzillllwmhz"; depends=[MASS misc3d rgl]; }; +gsDesign = derive { name="gsDesign"; version="2.9-3"; sha256="0dd96hciiksf436lpm1q35in06b82p4h09spklf28n0p5hgc9225"; depends=[ggplot2 plyr RUnit stringr xtable]; }; gsalib = derive { name="gsalib"; version="2.1"; sha256="1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1"; depends=[]; }; gsarima = derive { name="gsarima"; version="0.1-4"; sha256="1ay3iamnvg7mbnl1xaxxcyic559bdnfspy883w2bwgy20yhr34yg"; depends=[MASS]; }; gsbDesign = derive { name="gsbDesign"; version="0.96-2"; sha256="0sk4a66z9bqi3aa2ky9472p9znfm93kc9p5igdmvii4dr0syyfxd"; depends=[gsDesign lattice]; }; -gset = derive { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc mvtnorm MCMCpack]; }; -gsg = derive { name="gsg"; version="2.0"; sha256="17fjl7aw1s814krnszxd4y1d4210bnkrf4kb2fwsycqwcwms5pm7"; depends=[mgcv mvtnorm boot numDeriv]; }; +gset = derive { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; }; +gsg = derive { name="gsg"; version="2.0"; sha256="17fjl7aw1s814krnszxd4y1d4210bnkrf4kb2fwsycqwcwms5pm7"; depends=[boot mgcv mvtnorm numDeriv]; }; gsheet = derive { name="gsheet"; version="0.1.0"; sha256="02mclvkq9lpp57ii8k3wj8cqjii9zsg4nl4i7zsa8b88r2bjmf9r"; depends=[dplyr rvest stringr]; }; gskat = derive { name="gskat"; version="1.0"; sha256="19mbif7wr88vk5wlc7m2l4xghjmfj2qd3s8yvjlkawbnjk8x6ib0"; depends=[CompQuadForm e1071 gee geepack Matrix]; }; gsl = derive { name="gsl"; version="1.9-10"; sha256="06n21p0k2ki6nb725a6sxwlb4p7xc5jhg11nq9c3z3dj39r0qgbd"; depends=[]; }; gsmoothr = derive { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gss = derive { name="gss"; version="2.1-4"; sha256="0vmyz3q7b2chzmvrwx6bk2yj5kmaxym6lznyrddxgf7xzjipvlii"; depends=[]; }; gsscopu = derive { name="gsscopu"; version="0.9-2"; sha256="0hg2ry9rhnn51g368fg1zxswx826y3m0yn2wjb2g5rw4a4zn1frr"; depends=[gss]; }; -gstat = derive { name="gstat"; version="1.0-22"; sha256="1jbjl2irg0a2jdxwk7nr3c33jf3dzbcydpxxjmld23zzx94qy1iv"; depends=[lattice sp zoo spacetime FNN]; }; -gstudio = derive { name="gstudio"; version="1.3"; sha256="1ddifizswm41y4sxnnfw8j90clba6zf022x0z4xipccaznim2gy9"; depends=[ggplot2 raster sp reshape2 ggmap popgraph]; }; +gstat = derive { name="gstat"; version="1.0-23"; sha256="0as4afwlwzmi37k8sbm0kssin8mikrny88smb71c0wf616yba4xi"; depends=[FNN lattice sp spacetime zoo]; }; gsubfn = derive { name="gsubfn"; version="0.6-6"; sha256="196x4c3ihf4q3i0v7b1xa6jm8jjld2rsx00qz03n90wfnjdx5idv"; depends=[proto]; }; gsw = derive { name="gsw"; version="1.0-3"; sha256="0ca3h567r23bdldic7labk1vbz8hhslw568lacbdcikm8q16hk72"; depends=[]; }; gtable = derive { name="gtable"; version="0.1.2"; sha256="0k9hfj6r5y238gqh92s3cbdn34biczx3zfh79ix5xq0c5vkai2xh"; depends=[]; }; gtcorr = derive { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; -gtools = derive { name="gtools"; version="3.4.2"; sha256="1s0vfi07gxaqvllidsws4f9admvc61sw19g2hvffa74sccqiwr6a"; depends=[]; }; -gtop = derive { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts quadprog lassoshooting]; }; +gtools = derive { name="gtools"; version="3.5.0"; sha256="1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6"; depends=[]; }; +gtop = derive { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; gtx = derive { name="gtx"; version="0.0.8"; sha256="0x71jji2yldi9wpx8d3nldbjfj4930j7zcasayzbylf9094gmg26"; depends=[survival]; }; gumbel = derive { name="gumbel"; version="1.05"; sha256="0d7isx7bhvryhaa25kxb4fm58ph81xaqscj19aaqzs8yg79ac2ar"; depends=[]; }; gvc = derive { name="gvc"; version="0.2.0"; sha256="0d7plcd5yy6xw1i6dvh2df8jg6fcyfd6kjypbflppnbl5n1zab12"; depends=[decompr]; }; -gvcm_cat = derive { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[Matrix MASS mgcv]; }; +gvcm_cat = derive { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[MASS Matrix mgcv]; }; gvlma = derive { name="gvlma"; version="1.0.0.2"; sha256="0gj52hg665nmlwgbjh9yvz7a3sbzlbj41ksxchnnlxaxipdf6sl8"; depends=[]; }; gwerAM = derive { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; }; gwrr = derive { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; -h2o = derive { name="h2o"; version="2.8.4.4"; sha256="03mj2p5wsgdn0jnv1fsrj7012v2am0mvyayj24zp7q56sfsgxigf"; depends=[statmod survival RCurl rjson]; }; -h5 = derive { name="h5"; version="0.9.1"; sha256="1q20i5hnfzr88kb63yvvgn7z39cvk514fj2770i29lm71jdph00q"; depends=[Rcpp Rcpp]; }; +h2o = derive { name="h2o"; version="3.0.0.22"; sha256="0vgm0dn0jgwpg0ak4x62ib8ai891vqqah0fx8sb3kxr0kxy1q0hw"; depends=[RCurl rjson statmod]; }; +h5 = derive { name="h5"; version="0.9.1"; sha256="1q20i5hnfzr88kb63yvvgn7z39cvk514fj2770i29lm71jdph00q"; depends=[Rcpp]; }; hSDM = derive { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; }; haarfisz = derive { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; hamlet = derive { name="hamlet"; version="0.7"; sha256="0f3gl5xvgdksaxk76dyv46hahc41f2j3pf9wp0rc0q7wpp5nfsjl"; depends=[]; }; @@ -3841,27 +3923,27 @@ hapassoc = derive { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6p haplo_ccs = derive { name="haplo.ccs"; version="1.3.1"; sha256="0cs90zxxbvglz1af0lh37dw1gxa04k0kawzxamz2was3dbh19lbz"; depends=[haplo_stats survival]; }; haplo_stats = derive { name="haplo.stats"; version="1.6.11"; sha256="0j3zh4n2rly8dij8srm8ck6fl63haw6d27m3nfnrxywr87pljg14"; depends=[]; }; haplotypes = derive { name="haplotypes"; version="1.0"; sha256="0pwihfi6g4jrnkha9s9rksq0fc8j04mlrwf0295rmy49y19rg84s"; depends=[network]; }; -harvestr = derive { name="harvestr"; version="0.6.0"; sha256="1jg4d98bwx2cm3hliayqrazq43sa9kd9ynpaid6x4ld3mz5y8mlq"; depends=[plyr digest]; }; +harvestr = derive { name="harvestr"; version="0.6.0"; sha256="1jg4d98bwx2cm3hliayqrazq43sa9kd9ynpaid6x4ld3mz5y8mlq"; depends=[digest plyr]; }; hash = derive { name="hash"; version="2.2.6"; sha256="0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"; depends=[]; }; hashFunction = derive { name="hashFunction"; version="1.0"; sha256="1v57xj8xwv6xhxvgp0zxgvs5vcjw8z5k2ciwbn0jxf4ilyd66cgj"; depends=[]; }; -hasseDiagram = derive { name="hasseDiagram"; version="0.1.1"; sha256="1szj5pi9i5ijqakxx4vwvwpz7y76jbgcgm76vfg4cnxvndf7sf4l"; depends=[]; }; -haven = derive { name="haven"; version="0.2.0"; sha256="1ww55ciibq62bix3pdwabpycxv1dh01zsrf0vb6jxxh1idxbm5hg"; depends=[Rcpp Rcpp BH]; }; -hawkes = derive { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp Rcpp RcppArmadillo]; }; +hasseDiagram = derive { name="hasseDiagram"; version="0.1.1"; sha256="1szj5pi9i5ijqakxx4vwvwpz7y76jbgcgm76vfg4cnxvndf7sf4l"; depends=[Rgraphviz]; }; +haven = derive { name="haven"; version="0.2.0"; sha256="1ww55ciibq62bix3pdwabpycxv1dh01zsrf0vb6jxxh1idxbm5hg"; depends=[BH Rcpp]; }; +hawkes = derive { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp RcppArmadillo]; }; hazus = derive { name="hazus"; version="0.1"; sha256="1c0ahjdy9di1683nk5k4rmr6rhb66523ny039nyv842rgqdy625j"; depends=[reshape2]; }; hbim = derive { name="hbim"; version="1.0.3"; sha256="1480nydsi2xj7zbfk4zw24mhsjadf83d827kpqzbmn0yh6srp3ps"; depends=[mvtnorm]; }; -hbm = derive { name="hbm"; version="1.0"; sha256="0qz28azm91a6pbss1mfc47a21d3q9rs3mmw0kgwc7i2a2m43mysm"; depends=[Matrix foreach doParallel]; }; +hbm = derive { name="hbm"; version="1.0"; sha256="0qz28azm91a6pbss1mfc47a21d3q9rs3mmw0kgwc7i2a2m43mysm"; depends=[doParallel foreach Matrix]; }; hbmem = derive { name="hbmem"; version="0.3"; sha256="0ylxp77ack874sadwfnry84a6bg8gdl9xbw821lp5q05nnyg0dcj"; depends=[]; }; -hbsae = derive { name="hbsae"; version="1.0"; sha256="1iwmpi0pn5fxyxkwqkbmy6w1f1wcx0p809jnviim0ypwib32mhh7"; depends=[Matrix arm]; }; +hbsae = derive { name="hbsae"; version="1.0"; sha256="1iwmpi0pn5fxyxkwqkbmy6w1f1wcx0p809jnviim0ypwib32mhh7"; depends=[arm Matrix]; }; hcc = derive { name="hcc"; version="0.54"; sha256="14b3pamkywb0wsjpbm0wpflcds0b5mfymvgk92rmf6ngz1bkpdbq"; depends=[]; }; hcci = derive { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; hcp = derive { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hda = derive { name="hda"; version="0.2-12"; sha256="11z9p35dvhi7bdw09d2yawh46nxk8axw76b51vk089g12nr2b9x7"; depends=[e1071]; }; -hddplot = derive { name="hddplot"; version="0.56"; sha256="0s9iijwq8zfvavqq2bkqm2884sg0957ppkggsv6mmm3cbdi2xrlc"; depends=[MASS]; }; -hddtools = derive { name="hddtools"; version="0.2.4"; sha256="001cm07jvbxzsp64mkjymnsncyrd6r1nxwhjqkk2mb5ldz0541ir"; depends=[sp rgdal raster RCurl XML zoo]; }; +hddplot = derive { name="hddplot"; version="0.56"; sha256="0s9iijwq8zfvavqq2bkqm2884sg0957ppkggsv6mmm3cbdi2xrlc"; depends=[MASS multtest]; }; +hddtools = derive { name="hddtools"; version="0.2.4"; sha256="001cm07jvbxzsp64mkjymnsncyrd6r1nxwhjqkk2mb5ldz0541ir"; depends=[raster RCurl rgdal sp XML zoo]; }; hdeco = derive { name="hdeco"; version="0.4.1"; sha256="04nggwckvn1kwi238qd33l4pryzn4aq5bmi30bvfi99gwnrlgfgq"; depends=[]; }; hdi = derive { name="hdi"; version="0.1-2"; sha256="19lc2h34jlj198gchnhbfbb8igwlan2b977a47j8p3q6haj5bcv1"; depends=[glmnet linprog MASS scalreg]; }; -hdlm = derive { name="hdlm"; version="1.2"; sha256="0s4lzg3s2k7f7byygb11s7f78l3rkkb0zn03kh3d7h8250wg9fax"; depends=[glmnet foreach MASS iterators]; }; -hdrcde = derive { name="hdrcde"; version="3.1"; sha256="027nxpzk1g0yx8rns7npdz30afs5hwpdqjiamc7yjrsi0rzm71lw"; depends=[mvtnorm locfit ash ks KernSmooth]; }; +hdlm = derive { name="hdlm"; version="1.2"; sha256="0s4lzg3s2k7f7byygb11s7f78l3rkkb0zn03kh3d7h8250wg9fax"; depends=[foreach glmnet iterators MASS]; }; +hdrcde = derive { name="hdrcde"; version="3.1"; sha256="027nxpzk1g0yx8rns7npdz30afs5hwpdqjiamc7yjrsi0rzm71lw"; depends=[ash KernSmooth ks locfit mvtnorm]; }; heatex = derive { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; heatmap_plus = derive { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; }; heatmap3 = derive { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; }; @@ -3870,18 +3952,18 @@ heavy = derive { name="heavy"; version="0.2-35"; sha256="04aw0r2hgnxf9nsd18q2b5d helloJavaWorld = derive { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; helsinki = derive { name="helsinki"; version="0.9.27"; sha256="1vhzlxjkk2hgzjlin9ksvjk3bi2ly5nm4361777m49lb84ncs7dr"; depends=[maptools RCurl rjson sp]; }; heplots = derive { name="heplots"; version="1.0-15"; sha256="0sl5pqc57lhhh8s8hym0l874saq974hms6vsq7ll6g60rifx4lbq"; depends=[car MASS]; }; -hergm = derive { name="hergm"; version="2.2-1"; sha256="0pii3dgpjgh4s5a1cjj0nyw3p8g0b7f0hhfbfc9mwr5mz84yidlh"; depends=[ergm latentnet network sna]; }; +hergm = derive { name="hergm"; version="2.2-2"; sha256="0jshhf57kybrayk94vv7p1sjvhlfcdya6jllaj9kgn46kkvci54p"; depends=[ergm latentnet network sna]; }; heritability = derive { name="heritability"; version="1.1"; sha256="05vcprf3rk65197njnhw7n5l19hvy7hfp4fdigkwzvch4rnicidf"; depends=[MASS]; }; hermite = derive { name="hermite"; version="1.1.0"; sha256="184f7iixsmpli5hp4f0frjxfwpxpicjn1yrk6sf8y4il49cx0s4v"; depends=[maxLik]; }; het_test = derive { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; }; -hett = derive { name="hett"; version="0.3-1"; sha256="1y0hr9g2pjwzc5azh095h33qidxhhmlvd1csamjnhwdphj5drzz0"; depends=[MASS lattice]; }; +hett = derive { name="hett"; version="0.3-1"; sha256="1y0hr9g2pjwzc5azh095h33qidxhhmlvd1csamjnhwdphj5drzz0"; depends=[lattice MASS]; }; hexView = derive { name="hexView"; version="0.3-3"; sha256="0cx5hl70sk1wk24na21vjyv50b2358z1plvvcw604qf1zij4icwn"; depends=[]; }; hexbin = derive { name="hexbin"; version="1.27.0"; sha256="0fs5nsaalic6fj7b347yjczws310y3q2v37yr8sg74yq8wqzsdj8"; depends=[lattice]; }; hflights = derive { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; }; hgam = derive { name="hgam"; version="0.1-2"; sha256="1flcc67n8kbh9m5phdfl587xg1x935zbp305y0gdmkc8vpkiwpcf"; depends=[grplasso lattice rgl]; }; -hglasso = derive { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[glasso mvtnorm igraph fields]; }; -hglm = derive { name="hglm"; version="2.0-11"; sha256="0yqnky2p5avxn7nv8wnk57xkd0dpk89jas6d577q50ms4dpwdl6z"; depends=[Matrix MASS hglm_data]; }; -hglm_data = derive { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[Matrix MASS]; }; +hglasso = derive { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; }; +hglm = derive { name="hglm"; version="2.1-0"; sha256="02d5m7j7c1z40kih1ywvnd32sdlshgsgagsbh9avhhpcg7lxswj9"; depends=[hglm_data MASS Matrix]; }; +hglm_data = derive { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[MASS Matrix]; }; hgm = derive { name="hgm"; version="1.11"; sha256="1p6391bcvsgf2mvkdrwc3fj3h6hkzshqmzb6f31kmpiihjwv3392"; depends=[deSolve]; }; hht = derive { name="hht"; version="2.1.2"; sha256="10lpndwpddcqxyrk9pq9dwaqpj4apxdic971nd68cn3pql6fssdn"; depends=[EMD fields spatstat]; }; hiPOD = derive { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; }; @@ -3889,8 +3971,9 @@ hiddenf = derive { name="hiddenf"; version="1.3"; sha256="02vdvvhfas8ziyipm13ihm hier_part = derive { name="hier.part"; version="1.0-4"; sha256="03acdgzkhbk4p0wxw2g1hzklmq9hzmdkkvfj742vzfswdd803yg9"; depends=[gtools]; }; hierDiversity = derive { name="hierDiversity"; version="0.1"; sha256="1n4jg003h9hvr2n43jwxgfpazvc5ij5lqvspxi49w8fpzpcrqrjj"; depends=[]; }; hierNet = derive { name="hierNet"; version="1.6"; sha256="08lifk92caa4l9nfb89rl6vby8sd1ba3ay7z29ffirsg7cx07qiw"; depends=[]; }; -hierarchicalDS = derive { name="hierarchicalDS"; version="2.9"; sha256="0ckxy4pww5iik4m4kqs714f00g7lfzsarjdbpd0bcalvq4lmaal2"; depends=[truncnorm mvtnorm Matrix coda xtable mc2d ggplot2 rgeos]; }; -hierfstat = derive { name="hierfstat"; version="0.04-14"; sha256="0zbl5cq0cidv0glgi1g2q0azfw393lnb7hp8m69sxwdjn3y3912c"; depends=[gtools ade4]; }; +hierarchicalDS = derive { name="hierarchicalDS"; version="2.9"; sha256="0ckxy4pww5iik4m4kqs714f00g7lfzsarjdbpd0bcalvq4lmaal2"; depends=[coda ggplot2 Matrix mc2d mvtnorm rgeos truncnorm xtable]; }; +hierband = derive { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; }; +hierfstat = derive { name="hierfstat"; version="0.04-14"; sha256="0zbl5cq0cidv0glgi1g2q0azfw393lnb7hp8m69sxwdjn3y3912c"; depends=[ade4 gtools]; }; hiertest = derive { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; highD2pop = derive { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; highTtest = derive { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; }; @@ -3899,8 +3982,8 @@ highlight = derive { name="highlight"; version="0.4.7"; sha256="1gpwj4phq45hhx4x highr = derive { name="highr"; version="0.5"; sha256="0jnab5pk5sg4f5krsg5jdamr4y40z2pzxhp5h6fb6wys3m75hzny"; depends=[]; }; hillmakeR = derive { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; }; hint = derive { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; -hisemi = derive { name="hisemi"; version="1.0-319"; sha256="0pm7dsaaqrdhkvxsk2cjvk6qd2rqqmddmv012smnrivi7mpnvd4w"; depends=[Matrix Iso fda]; }; -hisse = derive { name="hisse"; version="1.0"; sha256="0vbwc006ypn9jcaw86dcvmg2hyjwb88h45zx8kjr5w506818phjp"; depends=[ape deSolve GenSA subplex]; }; +hisemi = derive { name="hisemi"; version="1.0-319"; sha256="0pm7dsaaqrdhkvxsk2cjvk6qd2rqqmddmv012smnrivi7mpnvd4w"; depends=[fda Iso Matrix]; }; +hisse = derive { name="hisse"; version="1.1"; sha256="1f35an1zfsy9ziqqb02fss2kss5070pzx7fzrqbrc3a5434qpdf5"; depends=[ape deSolve GenSA phytools subplex]; }; histmdl = derive { name="histmdl"; version="0.4-1"; sha256="0kiz95hdi658j5s7aqlf8n9k35s30pshc5nymif88gjik9gvrxd0"; depends=[]; }; histogram = derive { name="histogram"; version="0.0-23"; sha256="0hrhk423wdybqbvgsjn7dxgb95bkvmbh573q1696634hvzfdm68c"; depends=[]; }; historydata = derive { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; @@ -3909,174 +3992,178 @@ hive = derive { name="hive"; version="0.1-16"; sha256="1xaxnr8nfkji2b5f5dq2h01pk hlr = derive { name="hlr"; version="0.0-4"; sha256="04w1hzjfg2ly9vm9ynh676fy74d9ncy3a1mak209z2ddgr3m7r2y"; depends=[MASS]; }; hmeasure = derive { name="hmeasure"; version="1.0"; sha256="0wr0xq956glmhvy4yis3qq7cfqv9x82ci9fzx3wjvaykd16h0sx9"; depends=[]; }; hmm_discnp = derive { name="hmm.discnp"; version="0.2-3"; sha256="1r9xxgsqh5pw9incldaxnsqhyanhd4jwm6w0ix1k43i53dw4diyr"; depends=[]; }; -hmmm = derive { name="hmmm"; version="1.0-3"; sha256="0yjx5i13jbv7vzxn84m6305124ri7jnym0bxbdj46s6l7lw025a9"; depends=[quadprog MASS mvtnorm]; }; +hmmm = derive { name="hmmm"; version="1.0-3"; sha256="0yjx5i13jbv7vzxn84m6305124ri7jnym0bxbdj46s6l7lw025a9"; depends=[MASS mvtnorm quadprog]; }; hnp = derive { name="hnp"; version="1.0"; sha256="1sxbgz57js1vxhz309dnj6jhw4y6c0pzk0a9xk8avacicnv0bxhr"; depends=[MASS]; }; -hoardeR = derive { name="hoardeR"; version="0.0-2"; sha256="1k9a469h6fmr1br93dsk4q14h2bw8225l0v5sfp2wyr8sfpwm1dg"; depends=[httr XML stringr]; }; +hoardeR = derive { name="hoardeR"; version="0.0-2"; sha256="1k9a469h6fmr1br93dsk4q14h2bw8225l0v5sfp2wyr8sfpwm1dg"; depends=[httr stringr XML]; }; holdem = derive { name="holdem"; version="1.1"; sha256="07h4cbg7hx91hc6ypi6hbalzdd9qz9rfhjgk5sq1srnangwwnxlw"; depends=[]; }; -homals = derive { name="homals"; version="1.0-5"; sha256="1azrwvdzn379in2sz9d94w2f2xp0d6iiayrv0bws44kvdzr95aqm"; depends=[rgl ape scatterplot3d]; }; +homals = derive { name="homals"; version="1.0-5"; sha256="1azrwvdzn379in2sz9d94w2f2xp0d6iiayrv0bws44kvdzr95aqm"; depends=[ape rgl scatterplot3d]; }; homeR = derive { name="homeR"; version="0.1"; sha256="0yq93b3wkgbnwzpyhx9c73sb9xgz7m3z4p5rflk3lmc0p53h81g5"; depends=[]; }; homtest = derive { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; }; hornpa = derive { name="hornpa"; version="1.0"; sha256="0pfvk2jkrwgvshgq9g55qijgpjh0677rpbya0r8759n92v3axbp4"; depends=[]; }; hot_deck = derive { name="hot.deck"; version="1.0"; sha256="11dxj676y55p4n0c27l7f3ns8kk308f6b6lhwfpjqfz0wgysnfq9"; depends=[mice]; }; -hotspots = derive { name="hotspots"; version="1.0.2"; sha256="1cwcwin86y7afjhs8jwlz1m63hh70dcjag0msds4ngksvjh9gj2q"; depends=[lattice ineq]; }; +hotspots = derive { name="hotspots"; version="1.0.2"; sha256="1cwcwin86y7afjhs8jwlz1m63hh70dcjag0msds4ngksvjh9gj2q"; depends=[ineq lattice]; }; howmany = derive { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; hpcwld = derive { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; }; -hpoPlot = derive { name="hpoPlot"; version="2.0"; sha256="080jzi1zw510clbbkmf2wkwbfgna06kfz91i7d90b9pqi7krj28j"; depends=[functional magrittr]; }; +hpoPlot = derive { name="hpoPlot"; version="2.0"; sha256="080jzi1zw510clbbkmf2wkwbfgna06kfz91i7d90b9pqi7krj28j"; depends=[functional magrittr Rgraphviz]; }; hqmisc = derive { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; hrr = derive { name="hrr"; version="1.1.1"; sha256="17jzsgh2784y7jdwpa50v7qz99dw6k2n25sisnam6h1a39b96byn"; depends=[]; }; -hsdar = derive { name="hsdar"; version="0.1.3"; sha256="0vwiavzzfxz81iskgjy0af8gwh8fkjiyzhql82s2n9snvy7d36fk"; depends=[sp raster rgdal rootSolve signal]; }; +hsdar = derive { name="hsdar"; version="0.1.5"; sha256="1ii83dpndshq8d00f3dxrzcxqplcc5b85b9cixxbda5bpvrlkpg1"; depends=[raster rgdal rootSolve signal sp]; }; hsicCCA = derive { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; hsmm = derive { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; -hsphase = derive { name="hsphase"; version="2.0.1"; sha256="1z7yxbknldxn780dxw9xz984b3i8pj5hmdnbynvxc5k0ss8g7isy"; depends=[snowfall Rcpp RcppArmadillo Rcpp]; }; -htmlTable = derive { name="htmlTable"; version="1.3"; sha256="00zcismapanyb68657gng5l6g3hsmpls84naracshj4gfk2l1cfs"; depends=[stringr knitr magrittr]; }; +hsphase = derive { name="hsphase"; version="2.0.1"; sha256="1z7yxbknldxn780dxw9xz984b3i8pj5hmdnbynvxc5k0ss8g7isy"; depends=[Rcpp RcppArmadillo snowfall]; }; +htmlTable = derive { name="htmlTable"; version="1.3"; sha256="00zcismapanyb68657gng5l6g3hsmpls84naracshj4gfk2l1cfs"; depends=[knitr magrittr stringr]; }; htmltools = derive { name="htmltools"; version="0.2.6"; sha256="1gp6f6388xy3cvnb08q08vraidjp740gfxlafdd19m2s04v5hncz"; depends=[digest]; }; -htmlwidgets = derive { name="htmlwidgets"; version="0.3.2"; sha256="1r0n3c2xvj9k7x892nbqyclpc66lq5wyxc2y0nybs5wcz3jx9s2p"; depends=[htmltools RJSONIO yaml]; }; +htmlwidgets = derive { name="htmlwidgets"; version="0.4"; sha256="079y3b3d4na582a1wmb5nc5cyrmmld4v7c1vc08cbfsg43w026zn"; depends=[htmltools jsonlite yaml]; }; hts = derive { name="hts"; version="4.4"; sha256="1dpm669lc4khjkcs49m1nh7i61sclsqy7xbcn4mqqjhfgs7sg7sk"; depends=[forecast SparseM]; }; -httk = derive { name="httk"; version="1.1"; sha256="198zxzap9m8c6rlzqjfrg6b9pvgbksk2myq5cw7j37j63lfnblki"; depends=[deSolve msm]; }; +httk = derive { name="httk"; version="1.2"; sha256="016njh1cm21bmdrn94cbsmf36gzcwfg21bqp8nl100qb16d6yqq6"; depends=[deSolve msm]; }; httpRequest = derive { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; -httpuv = derive { name="httpuv"; version="1.3.2"; sha256="0vp3bz1nxi0ladlgi1r6wd480y0m2m0gsba2hrs73s9b8afrfh6v"; depends=[Rcpp Rcpp]; }; -httr = derive { name="httr"; version="0.6.1"; sha256="111l6ygwnrzcqwny6ds62np0r2f6x0il7abapq00j1y86nk4p6l6"; depends=[digest jsonlite mime RCurl R6 stringr]; }; -huge = derive { name="huge"; version="1.2.6"; sha256="11njfd4i8q950apga6sdk84p4wk4qvp8bpg6yz9lgjrgj2hn14n2"; depends=[Matrix lattice igraph MASS]; }; +httpuv = derive { name="httpuv"; version="1.3.2"; sha256="0vp3bz1nxi0ladlgi1r6wd480y0m2m0gsba2hrs73s9b8afrfh6v"; depends=[Rcpp]; }; +httr = derive { name="httr"; version="0.6.1"; sha256="111l6ygwnrzcqwny6ds62np0r2f6x0il7abapq00j1y86nk4p6l6"; depends=[digest jsonlite mime R6 RCurl stringr]; }; +huge = derive { name="huge"; version="1.2.6"; sha256="11njfd4i8q950apga6sdk84p4wk4qvp8bpg6yz9lgjrgj2hn14n2"; depends=[igraph lattice MASS Matrix]; }; humanFormat = derive { name="humanFormat"; version="1.0"; sha256="0zwjbl8s5dx5d57sfmq6myc6snximc56zl88h8y1s1jqphyn9sir"; depends=[testthat]; }; hwde = derive { name="hwde"; version="0.64"; sha256="1is39zknssqm98577sdjg8gn3h9wsraih19a9nd6n8mxdcsqivh4"; depends=[]; }; hwriter = derive { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; hwriterPlus = derive { name="hwriterPlus"; version="1.0-3"; sha256="1sk95qgpyxwk1cfkkp91qvn1iklad9glrnljdpidj20lnmpwyikx"; depends=[hwriter TeachingDemos]; }; hwwntest = derive { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; -hybridEnsemble = derive { name="hybridEnsemble"; version="0.1.1"; sha256="1hn6zfz22mgxv5qpwdgmn7a9snha7hdkbbqq3xicy37j8xypsab5"; depends=[kernelFactory ada rpart ROCR nnet e1071 NMOF GenSA Rmalschains pso AUC soma genalg reportr nnls quadprog tabuSearch glmnet]; }; +hybridEnsemble = derive { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; hybridHclust = derive { name="hybridHclust"; version="1.0-4"; sha256="1967p6crkrbnlfghd9x1alr2x57nqjl1zh58hhyshgla3xmdmhx5"; depends=[cluster]; }; hydroApps = derive { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; }; -hydroGOF = derive { name="hydroGOF"; version="0.3-8"; sha256="1ljk2dk5ydsg7qdizyzkbw0b2zdhnb3x9h965d94ygzg8nw5kbak"; depends=[zoo hydroTSM xts]; }; -hydroPSO = derive { name="hydroPSO"; version="0.3-4"; sha256="12md94g78m7m1np36sadx0wxpb149pn5gd8yj2kw7fphb8g6a218"; depends=[Hmisc sp lattice zoo lhs]; }; -hydroTSM = derive { name="hydroTSM"; version="0.4-2-1"; sha256="0z5xw25w2fn67x2dw61msfdnp2dr2s2yi525fcjxn77339x9ksfr"; depends=[zoo xts e1071 gstat automap sp]; }; +hydroGOF = derive { name="hydroGOF"; version="0.3-8"; sha256="1ljk2dk5ydsg7qdizyzkbw0b2zdhnb3x9h965d94ygzg8nw5kbak"; depends=[hydroTSM xts zoo]; }; +hydroPSO = derive { name="hydroPSO"; version="0.3-4"; sha256="12md94g78m7m1np36sadx0wxpb149pn5gd8yj2kw7fphb8g6a218"; depends=[Hmisc lattice lhs sp zoo]; }; +hydroTSM = derive { name="hydroTSM"; version="0.4-2-1"; sha256="0z5xw25w2fn67x2dw61msfdnp2dr2s2yi525fcjxn77339x9ksfr"; depends=[automap e1071 gstat sp xts zoo]; }; hydrogeo = derive { name="hydrogeo"; version="0.2-3"; sha256="1kvzpdjrzbxy4rbfhjqmxdipaamd2rjdyxjv6vfxv1ixs1bm8cwm"; depends=[]; }; hydrostats = derive { name="hydrostats"; version="0.2.3"; sha256="1hd4jcdkdl546kqvx9swnqn7gjvd7ppz034cqflpckhn68rc62g7"; depends=[]; }; -hyperSpec = derive { name="hyperSpec"; version="0.98-20150304"; sha256="0fjww2h6vlm53dsnaxb3i11cmary1w8l0jr9c5dy16y7n9cc3hqb"; depends=[lattice ggplot2 mvtnorm latticeExtra svUnit]; }; -hyperdirichlet = derive { name="hyperdirichlet"; version="1.4-9"; sha256="03c2xgfhfbpn1za84ajhvm0i5cpmfnz1makidrr2222addgyp9zx"; depends=[aylmer abind mvtnorm cubature]; }; +hyperSpec = derive { name="hyperSpec"; version="0.98-20150304"; sha256="0fjww2h6vlm53dsnaxb3i11cmary1w8l0jr9c5dy16y7n9cc3hqb"; depends=[ggplot2 lattice latticeExtra mvtnorm svUnit]; }; +hyperdirichlet = derive { name="hyperdirichlet"; version="1.4-9"; sha256="03c2xgfhfbpn1za84ajhvm0i5cpmfnz1makidrr2222addgyp9zx"; depends=[abind aylmer cubature mvtnorm]; }; hypergea = derive { name="hypergea"; version="1.2.3"; sha256="13a8r7f2qq7wi0h7jrg29mn573njzi1rwna0ch9sj8sdy8w26r6w"; depends=[]; }; -hypergeo = derive { name="hypergeo"; version="1.2-9"; sha256="0ydwza0h8ykzbrsvvp4wd5jiy05rx5bj93c7bplx68j3c68c9f1q"; depends=[elliptic contfrac]; }; -hypervolume = derive { name="hypervolume"; version="1.2.2"; sha256="1nc5hybw5aa5pdrf9j1jv6d69q1im7whz0d05rmyskcayy2x3pyi"; depends=[Rcpp rgl MASS geometry pdist Rcpp]; }; +hypergeo = derive { name="hypergeo"; version="1.2-9"; sha256="0ydwza0h8ykzbrsvvp4wd5jiy05rx5bj93c7bplx68j3c68c9f1q"; depends=[contfrac elliptic]; }; +hypervolume = derive { name="hypervolume"; version="1.3.0"; sha256="07pnbkdqm4jssv6h31q68mawckiyxczsjfw4gndpyvxnl44p0qrz"; depends=[fastcluster geometry ks MASS Rcpp RcppArmadillo rgl]; }; hypothesestest = derive { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; -hysteresis = derive { name="hysteresis"; version="2.5"; sha256="1b1dd2367pjbg4jnn65l2jcj38ljz7adpdg8f5b9rj1rw7qgikfl"; depends=[car msm MASS]; }; -hzar = derive { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[MCMCpack foreach coda]; }; -iBATCGH = derive { name="iBATCGH"; version="1.2"; sha256="0py83q8fcrh0kjysvljx22b7s2gsccq19rzvwf3alq8vl59sm48i"; depends=[Rcpp msm Rcpp RcppArmadillo]; }; -iBUGS = derive { name="iBUGS"; version="0.1.4"; sha256="0vsxy8pnbix0rg7ksgywx7kypqb5ngkxhldh3cisjkvdv638ybps"; depends=[R2WinBUGS gWidgetsRGtk2]; }; -iC10 = derive { name="iC10"; version="1.1.2"; sha256="1ncxdjw9ary0bs3fvnvyqp356gi4wa177sllkizq71fzn75a03x3"; depends=[pamr iC10TrainingData]; }; +hysteresis = derive { name="hysteresis"; version="2.5"; sha256="1b1dd2367pjbg4jnn65l2jcj38ljz7adpdg8f5b9rj1rw7qgikfl"; depends=[car MASS msm]; }; +hzar = derive { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; }; +iBATCGH = derive { name="iBATCGH"; version="1.2"; sha256="0py83q8fcrh0kjysvljx22b7s2gsccq19rzvwf3alq8vl59sm48i"; depends=[msm Rcpp RcppArmadillo]; }; +iBUGS = derive { name="iBUGS"; version="0.1.4"; sha256="0vsxy8pnbix0rg7ksgywx7kypqb5ngkxhldh3cisjkvdv638ybps"; depends=[gWidgetsRGtk2 R2WinBUGS]; }; +iC10 = derive { name="iC10"; version="1.1.2"; sha256="1ncxdjw9ary0bs3fvnvyqp356gi4wa177sllkizq71fzn75a03x3"; depends=[iC10TrainingData pamr]; }; iC10TrainingData = derive { name="iC10TrainingData"; version="1.0.1"; sha256="1x1kgxiib9l7whm2kmbv1s912hgpl7rdpqpn67nlkiswnr27hqn4"; depends=[]; }; -iCluster = derive { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[lattice caTools gdata gtools gplots]; }; -iDynoR = derive { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[XML vegan]; }; -iFad = derive { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[Rlab MASS coda ROCR]; }; -iFes = derive { name="iFes"; version="1.0"; sha256="0in6wy6w567188gylnlvcsk3r3w2nln9h60rj7ng1qwqawrvgwxp"; depends=[ROCR doParallel foreach]; }; -iGasso = derive { name="iGasso"; version="1.2"; sha256="123487slizsmw5b0imwqll8n03navx30kvawr6jfibbjfdd8vfn7"; depends=[lattice CompQuadForm]; }; -iRefR = derive { name="iRefR"; version="1.13"; sha256="17kjfga62xc4s1kii5clxszbag2dr1dyxfm7jasr20prx28ya6pp"; depends=[igraph]; }; +iCluster = derive { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; }; +iDynoR = derive { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[vegan XML]; }; +iFad = derive { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[coda MASS Rlab ROCR]; }; +iFes = derive { name="iFes"; version="1.0"; sha256="0in6wy6w567188gylnlvcsk3r3w2nln9h60rj7ng1qwqawrvgwxp"; depends=[doParallel foreach ROCR]; }; +iGasso = derive { name="iGasso"; version="1.2"; sha256="123487slizsmw5b0imwqll8n03navx30kvawr6jfibbjfdd8vfn7"; depends=[CompQuadForm lattice]; }; +iRefR = derive { name="iRefR"; version="1.13"; sha256="17kjfga62xc4s1kii5clxszbag2dr1dyxfm7jasr20prx28ya6pp"; depends=[graph igraph RBGL]; }; iRegression = derive { name="iRegression"; version="1.2"; sha256="1fn25xnrvgx2ayhss136rxn1h3c9pvq2gmb5kbp92vsf07klvh6v"; depends=[mgcv]; }; iRepro = derive { name="iRepro"; version="1.0"; sha256="1knncn47pl411r31z1r5ipsiyagcpjbc2gb972n7l3539pcpf0zy"; depends=[]; }; iWeigReg = derive { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6qw019fx8a7vsabm37867zycssn77z9nc8"; depends=[MASS trust]; }; -ibd = derive { name="ibd"; version="1.2"; sha256="0681v7lgx697yj2d60cw3p5axbbaxanzj291vdf7ailn7300p1ms"; depends=[lpSolve MASS car lsmeans multcompView]; }; +ibd = derive { name="ibd"; version="1.2"; sha256="0681v7lgx697yj2d60cw3p5axbbaxanzj291vdf7ailn7300p1ms"; depends=[car lpSolve lsmeans MASS multcompView]; }; ibdreg = derive { name="ibdreg"; version="0.2.5"; sha256="1kaa5q1byi30wzr0mw4w2cv1ssxprzcwf91wrpqwkgcsdy7dkh2g"; depends=[]; }; -ibeemd = derive { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[fields deldir rgeos sp spdep]; }; -ibelief = derive { name="ibelief"; version="1.0"; sha256="1mcmq1zpj1f6alhnsznb27iknp7dzdsd25di8a64hw5c3cnx3xay"; depends=[]; }; -ibmdbR = derive { name="ibmdbR"; version="1.36.7"; sha256="0v6l8cm0sww2gm8yal4ffk2wcxfnvfsd76i92f2khank7bhga06r"; depends=[RODBC MASS]; }; +ibeemd = derive { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; }; +ibelief = derive { name="ibelief"; version="1.1"; sha256="164cd68qq0z68n5j0b192krpk73y8cy15wr5wnb52rzxv5k7rfd4"; depends=[]; }; +ibmdbR = derive { name="ibmdbR"; version="1.36.7"; sha256="0v6l8cm0sww2gm8yal4ffk2wcxfnvfsd76i92f2khank7bhga06r"; depends=[MASS RODBC]; }; ibr = derive { name="ibr"; version="1.4.5"; sha256="0nw2j232br06l30v3cn4qcr25vbh911v2mz7nfail40sqxc6wwc4"; depends=[]; }; -ic_infer = derive { name="ic.infer"; version="1.1-5"; sha256="0nmx7ijczzvrv1j4321g5g5nawzll8srf302grc39npvv1q17jyz"; depends=[quadprog mvtnorm boot kappalab]; }; +ic_infer = derive { name="ic.infer"; version="1.1-5"; sha256="0nmx7ijczzvrv1j4321g5g5nawzll8srf302grc39npvv1q17jyz"; depends=[boot kappalab mvtnorm quadprog]; }; ic50 = derive { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; }; ica = derive { name="ica"; version="1.0-0"; sha256="009xv1ycgbnw6ysx1wxrgygny7qa2wd2mcjrg2fwxg958mzyrx4z"; depends=[]; }; icaOcularCorrection = derive { name="icaOcularCorrection"; version="3.0.0"; sha256="1vmvarc2apipd0vlhprc5wpgh8i38m5myj1gqdymjrnky0azq17f"; depends=[fastICA mgcv]; }; -icamix = derive { name="icamix"; version="1.0.2"; sha256="0rpqx9q5p3nb5gd76zlkqls52a8qiw7y9r26jwxs71nxl85clqcs"; depends=[Rcpp Rcpp RcppArmadillo]; }; +icamix = derive { name="icamix"; version="1.0.2"; sha256="0rpqx9q5p3nb5gd76zlkqls52a8qiw7y9r26jwxs71nxl85clqcs"; depends=[Rcpp RcppArmadillo]; }; icapca = derive { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; -iccbeta = derive { name="iccbeta"; version="1.0"; sha256="0zsf2b5nrv39pssi5walf82892fr8p1f802c96hjjknh78q7gh0h"; depends=[lme4 Rcpp Rcpp RcppArmadillo]; }; -icd9 = derive { name="icd9"; version="1.2"; sha256="0d0dgd5951chyfimzjb00cphdvqzml8p8wr7sad3qfhv44dsypn7"; depends=[Rcpp checkmate Rcpp]; }; -icenReg = derive { name="icenReg"; version="1.1.1"; sha256="0q1h94r6sv56jxrg1lxc8ms1drrcrqf7k888jb63qmg4wscp33bi"; depends=[survival foreach]; }; -icensmis = derive { name="icensmis"; version="1.2.1"; sha256="1h4l9irip4hv34hr92j8756qgmy455mfdblr7ypgsgvr27cgax8h"; depends=[Rcpp Rcpp]; }; +iccbeta = derive { name="iccbeta"; version="1.0"; sha256="0zsf2b5nrv39pssi5walf82892fr8p1f802c96hjjknh78q7gh0h"; depends=[lme4 Rcpp RcppArmadillo]; }; +icd9 = derive { name="icd9"; version="1.2"; sha256="0d0dgd5951chyfimzjb00cphdvqzml8p8wr7sad3qfhv44dsypn7"; depends=[checkmate Rcpp]; }; +icenReg = derive { name="icenReg"; version="1.2.4"; sha256="0fqwg1xmks9zkmbnr1dala4b13l85ibqfd96w4vvrfhmvakqra1r"; depends=[foreach survival]; }; +icensmis = derive { name="icensmis"; version="1.2.1"; sha256="1h4l9irip4hv34hr92j8756qgmy455mfdblr7ypgsgvr27cgax8h"; depends=[Rcpp]; }; idbg = derive { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; identity = derive { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; +idm = derive { name="idm"; version="1.0"; sha256="001zvhw38qgq1l66yxz5kchvjspijdvqwgrdvh5ykiqifi8kc5xm"; depends=[animation ca corpcor dummies ggplot2]; }; idr = derive { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; }; ieeeround = derive { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; ifa = derive { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; }; +ifctools = derive { name="ifctools"; version="0.3.1"; sha256="0lr1d4z2gzninqchfzmmmymd0ngywrjpbh7bvd6qgxkzabf9yxxx"; depends=[]; }; ifs = derive { name="ifs"; version="0.1.4"; sha256="0fzani8rnn4rdwlghq967hhi4zfjnk3gwpk3v6wys738xj7yfwp1"; depends=[]; }; -ifultools = derive { name="ifultools"; version="2.0-1"; sha256="16lrmajyfa15akgjq71w9xlfsr4y9aqfw7y0jf6gydaz4y6jq9b9"; depends=[splus2R MASS]; }; +ifultools = derive { name="ifultools"; version="2.0-1"; sha256="16lrmajyfa15akgjq71w9xlfsr4y9aqfw7y0jf6gydaz4y6jq9b9"; depends=[MASS splus2R]; }; ig_vancouver_2014_topcolour = derive { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igraph = derive { name="igraph"; version="0.7.1"; sha256="1nvb30zjjw861idbd8zap9qqg22k87zdi6qqvjf1s29v7hkx7kq7"; depends=[Matrix]; }; igraphdata = derive { name="igraphdata"; version="0.2.2"; sha256="0lmgz9zglz0rn0iyjs9kdcm1xp09kh21sv91wnj74666jp0wsg4x"; depends=[]; }; igraphtosonia = derive { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; ihs = derive { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; }; -iki_dataclim = derive { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[zoo lubridate climdex_pcic PCICt]; }; -ilc = derive { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[demography rainbow forecast date survival]; }; -imguR = derive { name="imguR"; version="1.0.0"; sha256="0yhlir0qxi6hjmqlmmklwd4vkymc5bzv9id9dlis1fr1f8a64vwp"; depends=[RCurl httr png jpeg]; }; +iki_dataclim = derive { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; }; +ilc = derive { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; +imguR = derive { name="imguR"; version="1.0.0"; sha256="0yhlir0qxi6hjmqlmmklwd4vkymc5bzv9id9dlis1fr1f8a64vwp"; depends=[httr jpeg png RCurl]; }; import = derive { name="import"; version="1.0.2"; sha256="1m6xnj08faf5ahb0ga4z13x3pwhvw2gh4wg72m9wcfcyr0rp74lx"; depends=[]; }; imprProbEst = derive { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; }; -imputeLCMD = derive { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[tmvtnorm norm]; }; +imputeLCMD = derive { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; imputeMDR = derive { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; }; -imputeR = derive { name="imputeR"; version="1.0.0"; sha256="18rx70w7xb33m84ifxl3p599js78pa748c9lmlkic6yqrgsabcip"; depends=[caret reshape2 glmnet pls rda Cubist ridge gbm mboost rpart]; }; +imputeR = derive { name="imputeR"; version="1.0.0"; sha256="18rx70w7xb33m84ifxl3p599js78pa748c9lmlkic6yqrgsabcip"; depends=[caret Cubist gbm glmnet mboost pls rda reshape2 ridge rpart]; }; in2extRemes = derive { name="in2extRemes"; version="1.0-1"; sha256="0k5qczs54b7bl71my8xmnqly91g7c5skj0lm2g8dk4hgrx6wwsrf"; depends=[extRemes]; }; -inTrees = derive { name="inTrees"; version="1.1"; sha256="1b88zy4rarcx1qxzv3089gzdz1smga6ssj8cxxccyyzci6px85j1"; depends=[RRF arules gbm xtable]; }; -inarmix = derive { name="inarmix"; version="0.4"; sha256="11a1vaxq22d5lab07jp5pw0znkaqj6bmkn6vsx62y6m4mmqk04yr"; depends=[Matrix Rcpp Rcpp]; }; +inTrees = derive { name="inTrees"; version="1.1"; sha256="1b88zy4rarcx1qxzv3089gzdz1smga6ssj8cxxccyyzci6px85j1"; depends=[arules gbm RRF xtable]; }; +inarmix = derive { name="inarmix"; version="0.4"; sha256="11a1vaxq22d5lab07jp5pw0znkaqj6bmkn6vsx62y6m4mmqk04yr"; depends=[Matrix Rcpp]; }; incReg = derive { name="incReg"; version="1.0"; sha256="1kckx64hn8g9wvjg7g9xild5hclim1rs7z2m7rgmbdwlbayxpwgv"; depends=[car]; }; -indicoio = derive { name="indicoio"; version="0.3"; sha256="04c2j4l103fiiibf83z7iq95wfnlv9rj46cyp9xy68bzqkbwdi3m"; depends=[httr rjson stringr png]; }; +indicoio = derive { name="indicoio"; version="0.3"; sha256="04c2j4l103fiiibf83z7iq95wfnlv9rj46cyp9xy68bzqkbwdi3m"; depends=[httr png rjson stringr]; }; indicspecies = derive { name="indicspecies"; version="1.7.5"; sha256="16m4pnfnmaskin4aaalm2cmv3vwzg94045max8nhkgw02kpskz1r"; depends=[permute]; }; ineq = derive { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; inference = derive { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; -inferference = derive { name="inferference"; version="0.4.61"; sha256="02rsirwh4arqkgxpw3vnd0m2k055ir2074mlz27gbzmwz0ycpfzk"; depends=[numDeriv lme4 Formula]; }; +inferference = derive { name="inferference"; version="0.4.62"; sha256="12iag6l2digxb056qc765xi27ayc4qyqdqzbhxscr8a5lxfkdn4p"; depends=[Formula lme4 numDeriv]; }; inflection = derive { name="inflection"; version="1.1"; sha256="1nb1pf07c371vwgplfyjs3q1iqgb5hyk9czxqrjiy18g8p7zdln2"; depends=[]; }; -influence_ME = derive { name="influence.ME"; version="0.9-5"; sha256="0sjrajhc198g391xa78l4gicmpyq4h7dnrnncji3qpgbqi772pkn"; depends=[lme4 Matrix lattice]; }; -influence_SEM = derive { name="influence.SEM"; version="1.4"; sha256="1grsnp8xwmhh9qx0yc5fy8b3g4i4cfqbg6sfzbmn39si2z34wrxw"; depends=[lavaan]; }; +influence_ME = derive { name="influence.ME"; version="0.9-5"; sha256="0sjrajhc198g391xa78l4gicmpyq4h7dnrnncji3qpgbqi772pkn"; depends=[lattice lme4 Matrix]; }; +influence_SEM = derive { name="influence.SEM"; version="1.5"; sha256="0h920pxa3sk6y7ipkihxm78i06alm5rmlmn5pr937j7abgypkk3p"; depends=[lavaan]; }; infoDecompuTE = derive { name="infoDecompuTE"; version="0.5.1"; sha256="1aigd1fvpdqjplq1s1js0sy8px68q73lbp5q591rn52c77smdhaj"; depends=[MASS]; }; informR = derive { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; }; infotheo = derive { name="infotheo"; version="1.2.0"; sha256="18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv"; depends=[]; }; infra = derive { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; }; +infuser = derive { name="infuser"; version="0.2"; sha256="1x585glkffw4kq8d13md4ksbrmqvp11pr05w5pp2z6rcxldaf5vd"; depends=[]; }; infutil = derive { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; inline = derive { name="inline"; version="0.3.14"; sha256="0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"; depends=[]; }; inlinedocs = derive { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; -insideRODE = derive { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve nlme lattice]; }; +insideRODE = derive { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; insol = derive { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; +install_load = derive { name="install.load"; version="1.0.3"; sha256="0fvync9v712r4l6053bncl8a0rgjq0nfnrnpc0yxc2m3mxf5hzvr"; depends=[]; }; insuranceData = derive { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; -intReg = derive { name="intReg"; version="0.2-8"; sha256="0cqf6lbn8aiyj5j7gg1qz80i477bfxbmxp7fjs25ish4bcdsbjja"; depends=[miscTools maxLik sets]; }; +intReg = derive { name="intReg"; version="0.2-8"; sha256="0cqf6lbn8aiyj5j7gg1qz80i477bfxbmxp7fjs25ish4bcdsbjja"; depends=[maxLik miscTools sets]; }; intRegGOF = derive { name="intRegGOF"; version="0.85-1"; sha256="0fyvhl6jmi6krfbimsq61dhixlz9h9jxk4yjvwbx2vl8d9fnnr54"; depends=[]; }; -intamap = derive { name="intamap"; version="1.3-37"; sha256="17l1bifks0vsk0a3bj2g4w8qrvhmdh0p145kmd09223x9yc4mc9v"; depends=[sp gstat automap mvtnorm MASS evd]; }; -intamapInteractive = derive { name="intamapInteractive"; version="1.1-10"; sha256="073k6sdds40fmlbw1xnp3x5sc9qdyq2s1bhp7av4jjm930hsvsrn"; depends=[intamap spcosa spatstat automap gstat]; }; +intamap = derive { name="intamap"; version="1.3-37"; sha256="17l1bifks0vsk0a3bj2g4w8qrvhmdh0p145kmd09223x9yc4mc9v"; depends=[automap evd gstat MASS mvtnorm sp]; }; +intamapInteractive = derive { name="intamapInteractive"; version="1.1-10"; sha256="073k6sdds40fmlbw1xnp3x5sc9qdyq2s1bhp7av4jjm930hsvsrn"; depends=[automap gstat intamap spatstat spcosa]; }; intcox = derive { name="intcox"; version="0.9.3"; sha256="1m1lzmymh2pk570k6nxq3nj7wxkvs1s3nvz8cb456fnv72ng8fap"; depends=[survival]; }; -interAdapt = derive { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[shiny knitcitations RCurl mvtnorm knitr]; }; +interAdapt = derive { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; interferenceCI = derive { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; }; -intergraph = derive { name="intergraph"; version="2.0-1"; sha256="03ycay3x4wd3j7r0mad9qgi4h77krapg613ans3jf9qa4ys2njlv"; depends=[network igraph]; }; -internetarchive = derive { name="internetarchive"; version="0.1.2"; sha256="08gbkqbzx963c1jy3a540fsd0ff9ylr7la1clwjn46lp4cc4yv1h"; depends=[httr jsonlite dplyr]; }; -interpretR = derive { name="interpretR"; version="0.2.2"; sha256="048qhq9mf3qna48v8ml7hfa7imrsrhrl0hrb44arh1ik3i5a2xx6"; depends=[randomForest AUC]; }; -interval = derive { name="interval"; version="1.1-0.1"; sha256="1lln9jkli28i4wivwzqrsxvv2n15560f7msjy5gssrm45vxrxms8"; depends=[survival perm MLEcens]; }; +intergraph = derive { name="intergraph"; version="2.0-1"; sha256="03ycay3x4wd3j7r0mad9qgi4h77krapg613ans3jf9qa4ys2njlv"; depends=[igraph network]; }; +internetarchive = derive { name="internetarchive"; version="0.1.2"; sha256="08gbkqbzx963c1jy3a540fsd0ff9ylr7la1clwjn46lp4cc4yv1h"; depends=[dplyr httr jsonlite]; }; +interpretR = derive { name="interpretR"; version="0.2.2"; sha256="048qhq9mf3qna48v8ml7hfa7imrsrhrl0hrb44arh1ik3i5a2xx6"; depends=[AUC randomForest]; }; +interval = derive { name="interval"; version="1.1-0.1"; sha256="1lln9jkli28i4wivwzqrsxvv2n15560f7msjy5gssrm45vxrxms8"; depends=[Icens MLEcens perm survival]; }; intervals = derive { name="intervals"; version="0.15.0"; sha256="0lvxaq5ia7hj65n00awz454a2vdxpskxjw45wsakgh0sc60hk8yz"; depends=[]; }; interventionalDBN = derive { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; }; intpoint = derive { name="intpoint"; version="1.0"; sha256="0zcv64a0clgf1k3ylh97q1w5ddrv227846gy9a68h6sgwc0ps88b"; depends=[]; }; -introgress = derive { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[nnet genetics RColorBrewer]; }; -intsvy = derive { name="intsvy"; version="1.6"; sha256="1bv8qap3d8yssfm80ilrn6wg3207hiy34sd92wl64bwpvqyi6i7p"; depends=[memisc foreign plyr ggplot2 reshape]; }; -invGauss = derive { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[survival optimx]; }; +introgress = derive { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; }; +intsvy = derive { name="intsvy"; version="1.6"; sha256="1bv8qap3d8yssfm80ilrn6wg3207hiy34sd92wl64bwpvqyi6i7p"; depends=[foreign ggplot2 memisc plyr reshape]; }; +invGauss = derive { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; }; investr = derive { name="investr"; version="1.3.0"; sha256="057wq6c5r7hrg1nz7460alsjsk83cvac2d1d4mjjx160q3m0zcvj"; depends=[nlme]; }; io = derive { name="io"; version="0.2.2"; sha256="07vifr1h8ldiam8ngp6yrx6mvdnmmnnsq3hcs2pyphws6hgdmwwh"; depends=[filenamer stringr]; }; -ionflows = derive { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[]; }; +ionflows = derive { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[Biostrings]; }; iosmooth = derive { name="iosmooth"; version="0.91"; sha256="03kyzhcl5lipaiajs53dc8jaazxv877nl0njbq88cp4af3gd6s82"; depends=[]; }; ipdmeta = derive { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; }; -ipdw = derive { name="ipdw"; version="0.2-2"; sha256="1mvxs1039hv9m36jhi11qvjysmpmh7ms522q9phwmljv2nnl7ylz"; depends=[gdistance sp raster]; }; +ipdw = derive { name="ipdw"; version="0.2-2"; sha256="1mvxs1039hv9m36jhi11qvjysmpmh7ms522q9phwmljv2nnl7ylz"; depends=[gdistance raster sp]; }; ipfp = derive { name="ipfp"; version="1.0"; sha256="1hpfbgygnpnl3fpx7zl728jyw00y3kbbc5f0d407phm56sfqmqwi"; depends=[]; }; -iplots = derive { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[rJava png]; }; -ipred = derive { name="ipred"; version="0.9-4"; sha256="0rig1sj0jqv2rrkgcr6fhr8477wxirxwnwk533l7rn6qr90prjwp"; depends=[rpart MASS survival nnet class prodlim]; }; +iplots = derive { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[png rJava]; }; +ipred = derive { name="ipred"; version="0.9-4"; sha256="0rig1sj0jqv2rrkgcr6fhr8477wxirxwnwk533l7rn6qr90prjwp"; depends=[class MASS nnet prodlim rpart survival]; }; ips = derive { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; }; iqLearn = derive { name="iqLearn"; version="1.3"; sha256="05f2spnzyqzbbgwz9llf4x5r6fsz5gxa1ckykv6wxg4sirdqccm1"; depends=[]; }; irace = derive { name="irace"; version="1.06"; sha256="10dizzjds1aszvyh0fn6ahqvgn2x6sg3lwb7rca8zhgphrjg92bl"; depends=[]; }; irlba = derive { name="irlba"; version="1.0.3"; sha256="1h2ymk9hg9xj2075w715742j23jl7kqa4cgzl1jvr48gcysq5byy"; depends=[Matrix]; }; irr = derive { name="irr"; version="0.84"; sha256="0njxackqj8hyf9j1yszwxbnaxgp27fc2bwyyf7dip72wc12f81n5"; depends=[lpSolve]; }; irtProb = derive { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; -irtoys = derive { name="irtoys"; version="0.1.7"; sha256="11nz675haigs6vg08qjibs8yccy2pbz0b9r8761fs8gw3n7bpfz4"; depends=[sm ltm]; }; +irtoys = derive { name="irtoys"; version="0.1.7"; sha256="11nz675haigs6vg08qjibs8yccy2pbz0b9r8761fs8gw3n7bpfz4"; depends=[ltm sm]; }; irtrees = derive { name="irtrees"; version="0.1.0"; sha256="03jmfyx1ia987zhi74fmmcdz70wnm8c7z5z30rwzd1cs11dijjwv"; depends=[]; }; isa2 = derive { name="isa2"; version="0.3.4"; sha256="12qbfvcj8whhy7d68l7ra5wnkpx87ldl6mir7r5n8afb3fkww0kp"; depends=[lattice]; }; isdals = derive { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; isingLenzMC = derive { name="isingLenzMC"; version="0.2.3"; sha256="1rkry39yhxvq3ypnnxgdv15kd5w0l5w56ywmkcsgkwlxdfrvlyn2"; depends=[]; }; ismev = derive { name="ismev"; version="1.40"; sha256="1isxgq62q6dk50c3w1l0j4nfgwsj6c2wnx2sm3ncxzlqml0ih6jn"; depends=[mgcv]; }; isocir = derive { name="isocir"; version="1.1-3"; sha256="1bx68n9wyfs2dcgph66rsy0jw8hjkl5kw212l0563kz3m1nik9sr"; depends=[circular combinat]; }; -isopam = derive { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[vegan cluster]; }; +isopam = derive { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; isotone = derive { name="isotone"; version="1.0-2"; sha256="0qcad691c1dk61a75813hxbc61jllvfc3j21gn85f0kcf4hn6dnz"; depends=[]; }; isotonic_pen = derive { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; -isva = derive { name="isva"; version="1.8"; sha256="09mrvvk09j460dzi45z8hwdpmibfshsii5dcp38g13czr40d48na"; depends=[fastICA]; }; -iteRates = derive { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[partitions VGAM MASS ape apTreeshape geiger gtools]; }; +isva = derive { name="isva"; version="1.8"; sha256="09mrvvk09j460dzi45z8hwdpmibfshsii5dcp38g13czr40d48na"; depends=[fastICA qvalue]; }; +iteRates = derive { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; iterLap = derive { name="iterLap"; version="1.1-2"; sha256="0ixh9aw115496ib0iswfsj97rjcd2f02z116dg57vl9hhzh28f13"; depends=[quadprog randtoolbox]; }; iterators = derive { name="iterators"; version="1.0.7"; sha256="1zwqawhcpi95fx4qqj4cy31v5qln2z503f7cvv9v5ch3ard4xxqv"; depends=[]; }; -iterpc = derive { name="iterpc"; version="0.2.7"; sha256="041gihbcv9i7f1jzvlldkyfm58p86pyv2sf4hbk09xp00azp8ahf"; depends=[Rcpp polynom Rcpp]; }; +iterpc = derive { name="iterpc"; version="0.2.7"; sha256="041gihbcv9i7f1jzvlldkyfm58p86pyv2sf4hbk09xp00azp8ahf"; depends=[polynom Rcpp]; }; itertools = derive { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itree = derive { name="itree"; version="0.1"; sha256="164zgr142hcp9plnbccs6m823p4m0prk73bvp54bc7bqnqmc3d9a"; depends=[]; }; @@ -4085,89 +4172,93 @@ itsadug = derive { name="itsadug"; version="0.8"; sha256="1lphbw1d1x1bs625rnr9jl itsmr = derive { name="itsmr"; version="1.5"; sha256="0l9m5is6d6pkpfkihx0jir5iv8zmqqav8vh9bkkpqv5iz61p4kxb"; depends=[]; }; ivbma = derive { name="ivbma"; version="1.05"; sha256="0d7kg6pkdx1aj1i6kqs2r7j1klxxwymml63qnrq6a6fia3ck9kk9"; depends=[]; }; ivfixed = derive { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; }; -ivivc = derive { name="ivivc"; version="0.2.2"; sha256="1qychbszcg9lmbmrnpv65xcv1i5k2xarsa374fs6gw7zlp5nrvap"; depends=[reshape optimx sciplot png deSolve minpack_lm]; }; -ivlewbel = derive { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm plyr lmtest]; }; +ivivc = derive { name="ivivc"; version="0.2.2"; sha256="1qychbszcg9lmbmrnpv65xcv1i5k2xarsa374fs6gw7zlp5nrvap"; depends=[deSolve minpack_lm optimx png reshape sciplot]; }; +ivlewbel = derive { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm lmtest plyr]; }; ivmodel = derive { name="ivmodel"; version="1.0"; sha256="14ic49vyikx5fiz2ccjmd53f0vcg3jh3fs6fqhl8w3hm9z9x4qvz"; depends=[Matrix]; }; -ivpack = derive { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER sandwich lmtest]; }; +ivpack = derive { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; }; ivpanel = derive { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; }; ivprobit = derive { name="ivprobit"; version="1.0"; sha256="1kijq7k6iv2ybaxb08kqzm2s2k6wp2z50r01kxcq023pmyfjczwy"; depends=[]; }; -jSonarR = derive { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[RCurl jsonlite]; }; -jaatha = derive { name="jaatha"; version="2.7.0"; sha256="1ibk84x38j03hbdrf9pi0bi025fxlk2ysqxmfrqiqr4zq2rzhbvp"; depends=[phyclust Rcpp reshape2 Rcpp]; }; +jSonarR = derive { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; }; +jaatha = derive { name="jaatha"; version="2.7.0"; sha256="1ibk84x38j03hbdrf9pi0bi025fxlk2ysqxmfrqiqr4zq2rzhbvp"; depends=[phyclust Rcpp reshape2]; }; jackstraw = derive { name="jackstraw"; version="1.0"; sha256="1irfzivy7c9fb2pr98flx05s5hkk6sid1hkd5b3k9m9mgs6ixbfy"; depends=[corpcor]; }; -jagsUI = derive { name="jagsUI"; version="1.3.1"; sha256="18g755dxmlwv5abjdv3sip5qxpd13sx79f85wb0ji5i4fjax26ky"; depends=[lattice rjags coda]; }; -james_analysis = derive { name="james.analysis"; version="1.0.0"; sha256="01nbwhph22nfl0biwcgvb1q76jp79qj7qfn2fxpyx2dkkhzxzrmv"; depends=[rjson naturalsort]; }; -jiebaR = derive { name="jiebaR"; version="0.5"; sha256="1x41jqc1ai3v1fn9f65dk7k4g2llf3pk9z3bwqihb95qf80mhd4v"; depends=[jiebaRD Rcpp Rcpp]; }; +jagsUI = derive { name="jagsUI"; version="1.3.7"; sha256="1zdrqxzjip4lgf99b4z76gvlhbmh0gcbkpghrlrj3j25wqzgn5y0"; depends=[coda lattice rjags]; }; +james_analysis = derive { name="james.analysis"; version="1.0.0"; sha256="01nbwhph22nfl0biwcgvb1q76jp79qj7qfn2fxpyx2dkkhzxzrmv"; depends=[naturalsort rjson]; }; +jiebaR = derive { name="jiebaR"; version="0.5"; sha256="1x41jqc1ai3v1fn9f65dk7k4g2llf3pk9z3bwqihb95qf80mhd4v"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jmetrik = derive { name="jmetrik"; version="1.0"; sha256="0xnbvby03fqbxgg0i0qxrrzjv98783n6d7c1fywj81x487qlj77j"; depends=[]; }; -joineR = derive { name="joineR"; version="1.0-3"; sha256="0q98nswbxk5dz8sazzd66jhlg7hv5x7wyzcvjc6zkr6ffvrl8xj7"; depends=[nlme MASS boot survival lattice statmod gdata]; }; -joint_Cox = derive { name="joint.Cox"; version="1.0"; sha256="1460i8ydwd0ix3slm9bn8jca5b1vs0w2wwx1md4npbmf5ly5x42l"; depends=[]; }; +joineR = derive { name="joineR"; version="1.0-3"; sha256="0q98nswbxk5dz8sazzd66jhlg7hv5x7wyzcvjc6zkr6ffvrl8xj7"; depends=[boot gdata lattice MASS nlme statmod survival]; }; +joint_Cox = derive { name="joint.Cox"; version="1.1"; sha256="1zkj9ynxq521s23dz93m63valjf4amm19dcmcm8844fvnzbr7z4h"; depends=[]; }; jointDiag = derive { name="jointDiag"; version="0.2"; sha256="0y1gzrc79vahfhn4jrj5xys8pmkzxj4by7361730gi347f0frs0a"; depends=[]; }; jointPm = derive { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; -jomo = derive { name="jomo"; version="0.2-0"; sha256="09vccbvy9y5p5w049l2v5qr1xbs915sihpddnrrjr4cc1w17ifzs"; depends=[]; }; +jomo = derive { name="jomo"; version="1.1-0"; sha256="109k9cpkf8wpw1z0g1ilglydx1k9jki2a675q6b19ip2zf2cinsz"; depends=[]; }; jpeg = derive { name="jpeg"; version="0.1-8"; sha256="05hawv5qcb82ljc1l2nchx1wah8mq2k2kfkhpzyww554ngzbwcnh"; depends=[]; }; js = derive { name="js"; version="0.2"; sha256="1dxyyrmwwq07l6pdqsvxscpciy4h1021h9ymx8hi2vqvv0mdrz76"; depends=[V8]; }; jsonlite = derive { name="jsonlite"; version="0.9.16"; sha256="12whrj9shnf8wd3a5yi9zcvinhgvik9nb2wp6202j869jdwxq5ym"; depends=[]; }; jtrans = derive { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; kSamples = derive { name="kSamples"; version="1.0.1"; sha256="11qylllwpm3rhrzmdlkbdqixpmx4qlvgmfwp9s4jfy5h3q68mfw7"; depends=[SuppDists]; }; kappaSize = derive { name="kappaSize"; version="1.1"; sha256="0jrjal8cvy2yg0qiyilmv3jl3ib5k9jg8gp2533kdsx4m0sack04"; depends=[]; }; -kappalab = derive { name="kappalab"; version="0.4-6"; sha256="0dmzy0d7azzfpnzbf8b7a6zgmmfwzfiybz8610asajyfsj36gszl"; depends=[lpSolve quadprog kernlab]; }; -kaps = derive { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[survival Formula coin]; }; -kcirt = derive { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[mvtnorm snowfall corpcor]; }; +kappalab = derive { name="kappalab"; version="0.4-6"; sha256="0dmzy0d7azzfpnzbf8b7a6zgmmfwzfiybz8610asajyfsj36gszl"; depends=[kernlab lpSolve quadprog]; }; +kaps = derive { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[coin Formula survival]; }; +kcirt = derive { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; +kdecopula = derive { name="kdecopula"; version="0.0.1"; sha256="100b3adwm95zspzzfm9lcbfic71knvzn2d3hs4k4mq187339sdlg"; depends=[cubature lattice locfit Rcpp RcppArmadillo VineCopula]; }; kdetrees = derive { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; }; kedd = derive { name="kedd"; version="1.0.2"; sha256="11mfgjr1pl56y4rcychs8xjgazy3vhg1xasr37fd0g32g7w3lxqg"; depends=[]; }; kelvin = derive { name="kelvin"; version="1.2-2"; sha256="0fl2yxc0dpmkhq3f7711gd08i7jlzlfncin1d6q251dfnmwd7rzf"; depends=[Bessel]; }; -kequate = derive { name="kequate"; version="1.4.0"; sha256="0vr45y4f6x3080pf3k53nifavf8mfhikz54nis66c53fs9rp0jwf"; depends=[ltm equateIRT]; }; -kerdiest = derive { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[date chron evir]; }; -kernelFactory = derive { name="kernelFactory"; version="0.2.0"; sha256="1ihghqrrndgif6kh6n0f4g3bfy5miskn3mk5ynxfcnnrfvp9h3xj"; depends=[randomForest AUC genalg kernlab]; }; +kequate = derive { name="kequate"; version="1.4.0"; sha256="0vr45y4f6x3080pf3k53nifavf8mfhikz54nis66c53fs9rp0jwf"; depends=[equateIRT ltm]; }; +kerdiest = derive { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; +kernelFactory = derive { name="kernelFactory"; version="0.2.2"; sha256="1ms6732s17vx120xr2l423qmj0h880r522zsgp474pq3fxc0mr48"; depends=[AUC genalg kernlab randomForest]; }; kernlab = derive { name="kernlab"; version="0.9-20"; sha256="0gwl3v8gxidzfmvwa2icqla8ypdgnmvcwxf54iwrvvy2csjx0w27"; depends=[]; }; +keypress = derive { name="keypress"; version="1.0.0"; sha256="16msbanmbv2kf09qvl8bd9rf1vr7xgcjzjhzngyfyxv90va3k86b"; depends=[]; }; kfigr = derive { name="kfigr"; version="1.1.0"; sha256="1mnnd603s741h1vp99q6d8lwvc46k9hmbhylng66wc7a5j6k8psz"; depends=[knitr]; }; kimisc = derive { name="kimisc"; version="0.2-1"; sha256="1nbhw1q0p87w4z326wj5b4k0xdv0ybkgcc59b3cqbqhrdx8zsvql"; depends=[plyr]; }; kin_cohort = derive { name="kin.cohort"; version="0.6"; sha256="13gnjk58m5kya9wj87klwm6h7cdqi61ba6y0cg9k1hgbc1ajy3s8"; depends=[survival]; }; +kineticF = derive { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; }; kinfit = derive { name="kinfit"; version="1.1.13"; sha256="1av33f4wns6qp79wyww70f7fsfybcqm83nby1ia65sjp2dz04dk1"; depends=[]; }; kinship2 = derive { name="kinship2"; version="1.6.0"; sha256="06f544yk61i1xq0rm0r5gpzwfl6rvzyg7gz8z86bjyxg0z44h3vy"; depends=[Matrix quadprog]; }; kintone = derive { name="kintone"; version="0.1.1"; sha256="13c82vkapks9j2crrb4awnhl60ld8b1r7xmy9yv4zzch868kcl5g"; depends=[RCurl rjson]; }; kissmig = derive { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; kitagawa = derive { name="kitagawa"; version="2.1-0"; sha256="1ddyd0rwwmdpbq823qass5dlp2lvi9d64wpl61ik6fghms2p9ryr"; depends=[kelvin]; }; kknn = derive { name="kknn"; version="1.2-5"; sha256="0c1qnn1lnypjybk2p0dpfrg6hzxflzbwmjb5biq45r57bzji7im7"; depends=[igraph Matrix]; }; -klaR = derive { name="klaR"; version="0.6-12"; sha256="10nkqb1zradbvifgv1fm373mhyydgdjjgmnw2442a2lark59z3vs"; depends=[MASS combinat]; }; -klausuR = derive { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[xtable psychometric polycor]; }; +klaR = derive { name="klaR"; version="0.6-12"; sha256="10nkqb1zradbvifgv1fm373mhyydgdjjgmnw2442a2lark59z3vs"; depends=[combinat MASS]; }; +klausuR = derive { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; }; klin = derive { name="klin"; version="2007-02-05"; sha256="0j0hr4bppzk754a66q5z42h7jzfavqpxgl7y266804aginfqm1ax"; depends=[Matrix]; }; km_ci = derive { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v"; depends=[survival]; }; -kmc = derive { name="kmc"; version="0.1-2"; sha256="16lv8wk24cp91qg5202zhfmdhg83qw8bwiycknaml5ki820ffdlx"; depends=[rootSolve emplik Rcpp Rcpp]; }; +kmc = derive { name="kmc"; version="0.1-2"; sha256="16lv8wk24cp91qg5202zhfmdhg83qw8bwiycknaml5ki820ffdlx"; depends=[emplik Rcpp rootSolve]; }; kmconfband = derive { name="kmconfband"; version="0.1"; sha256="10n5w8k57faqcclwshs4m66i2i5b70i6f3xq5nqlgsi2ldkysbc9"; depends=[survival]; }; -kmi = derive { name="kmi"; version="0.5.1"; sha256="0519mi7kwrsfpili7y8nmyiky6qwf8xkd0n7cwj02c8d119bk9sa"; depends=[survival mitools]; }; -kml = derive { name="kml"; version="2.2"; sha256="1g8wgmvs31r3hp7y8n9pkxc9qy5fxvb3nicmzgacmghaiwbwc8g3"; depends=[clv longitudinalData]; }; -kml3d = derive { name="kml3d"; version="2.2"; sha256="1n94kfi49rgb9149bgc9043f0y5xpaclmfjr8fkwairqz5nnmgbv"; depends=[clv rgl misc3d longitudinalData kml]; }; +kmi = derive { name="kmi"; version="0.5.1"; sha256="0519mi7kwrsfpili7y8nmyiky6qwf8xkd0n7cwj02c8d119bk9sa"; depends=[mitools survival]; }; +kml = derive { name="kml"; version="2.3.1"; sha256="1bnd8ssbhijxd9c9x7qn96jdkj1f1jnm46nw86164issxc6ypm5a"; depends=[clv longitudinalData]; }; +kml3d = derive { name="kml3d"; version="2.3"; sha256="0dlpxp8bbrwgblrl1hnc1ip592abc6sdcl87s4m6jwgfaxjcq7a8"; depends=[clv kml longitudinalData misc3d rgl]; }; kmlcov = derive { name="kmlcov"; version="1.0.1"; sha256="09s9ganfsnwp22msha78g6pjr45ppyfyqjf6ci64w3w15q5qlcd9"; depends=[]; }; kmodR = derive { name="kmodR"; version="0.1.0"; sha256="1y1pqrrralklflyb1dw8bslfcyqrw8ryijfbhkwba7ykpxcf9fda"; depends=[]; }; -knitcitations = derive { name="knitcitations"; version="1.0.5"; sha256="1a9lw9gdb31akdwiif5xzbs4s0s9xkhm3n735xnkiyc9n6afwzn3"; depends=[RefManageR digest httr]; }; -knitr = derive { name="knitr"; version="1.10.5"; sha256="1qxpsnjwb4bdq44k3nglfrznpvqaqj18njx4imbpk3njzcjif7a7"; depends=[evaluate digest formatR highr markdown stringr yaml]; }; +knitcitations = derive { name="knitcitations"; version="1.0.6"; sha256="18jfrzazbk8cy9i7qvmmrn8c5cmkxvmdd894jpvak2gplxvsdx91"; depends=[digest httr RefManageR]; }; +knitr = derive { name="knitr"; version="1.10.5"; sha256="1qxpsnjwb4bdq44k3nglfrznpvqaqj18njx4imbpk3njzcjif7a7"; depends=[digest evaluate formatR highr markdown stringr yaml]; }; knitrBootstrap = derive { name="knitrBootstrap"; version="0.9.0"; sha256="1cw5dvhjiypk6847qypxphfl9an54qjvd6qv029znhwijsg56mmg"; depends=[knitr markdown]; }; knnGarden = derive { name="knnGarden"; version="1.0.1"; sha256="1gmhgr42l6pvc6pzlq5khrlh080795b0v1l5xf956g2ckgk5r8m1"; depends=[cluster]; }; knnIndep = derive { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knncat = derive { name="knncat"; version="1.2.2"; sha256="1d392910y3yy46j8my1a7m0xkij2rc6vwq5fg22qk00vqli8drz2"; depends=[]; }; knockoff = derive { name="knockoff"; version="0.2.1"; sha256="197icnyxxmi6f0v0p2zm4910grbgkfjkd3xql79ny04ik047v0kp"; depends=[glmnet RJSONIO]; }; koRpus = derive { name="koRpus"; version="0.05-5"; sha256="03rw0yb67y652j8hcr5m4c0py0rr3gp87y0hdxpypd81rkikwhfm"; depends=[]; }; -kobe = derive { name="kobe"; version="1.3.2"; sha256="1z64jwrq6ddpm22cvk2swmxl1j7qyz0ddk3880c7zfq6gk7f9bxl"; depends=[plyr reshape ggplot2 MASS emdbook coda]; }; +kobe = derive { name="kobe"; version="1.3.2"; sha256="1z64jwrq6ddpm22cvk2swmxl1j7qyz0ddk3880c7zfq6gk7f9bxl"; depends=[coda emdbook ggplot2 MASS plyr reshape]; }; kofnGA = derive { name="kofnGA"; version="1.1"; sha256="1ykk3rmyrv8c556rl3wp0i1d522dghaq4qk5acg06hhk9j9962fg"; depends=[]; }; kohonen = derive { name="kohonen"; version="2.0.18"; sha256="08inl7rx30gjpqbdbhccy65bingimzgi4lckfvs0r6lba04a1f8l"; depends=[class MASS]; }; -kolmim = derive { name="kolmim"; version="0.2"; sha256="1cq1miny83shxas4zijcbzcnxv29vjyxj3pip8brf52sjvrj4max"; depends=[]; }; +kolmim = derive { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; kpodclustr = derive { name="kpodclustr"; version="1.0"; sha256="1fywgdj4q3kg8y9lwnj6vxg9cwgs5ccwj6m3knfgg92f8ghnsbsw"; depends=[clues]; }; kriging = derive { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; krm = derive { name="krm"; version="2015.3-4"; sha256="0zm2d3naprvv10ac28k4h2r6f1ygi8wic0gwbm6mvgwpb530gga1"; depends=[kyotil]; }; -ks = derive { name="ks"; version="1.9.4"; sha256="0gi93d981y2i5q80wxh7f4dwwh7sjw6iy63y7571nzf01yw00gbx"; depends=[KernSmooth misc3d mvtnorm rgl multicool]; }; +ks = derive { name="ks"; version="1.9.4"; sha256="0gi93d981y2i5q80wxh7f4dwwh7sjw6iy63y7571nzf01yw00gbx"; depends=[KernSmooth misc3d multicool mvtnorm rgl]; }; kselection = derive { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; kst = derive { name="kst"; version="0.2-1"; sha256="1wy9cvvln994qgr0p7qa9qs1jd7gjv6ch65gg6i42cf9681m9h65"; depends=[proxy relations sets]; }; ktsolve = derive { name="ktsolve"; version="1.1"; sha256="0b5myr093v3qaj9gzbw1w728i5ij418whxxpicj51w657dcy647k"; depends=[]; }; -ktspair = derive { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[]; }; +ktspair = derive { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[Biobase]; }; kulife = derive { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; -kyotil = derive { name="kyotil"; version="2015.2-27"; sha256="0xx54b332bfg0b69m80d2qafcy7bwc5b7paq3x02rkh6xllsnq4y"; depends=[]; }; +kwb_hantush = derive { name="kwb.hantush"; version="0.2.1"; sha256="0rjnhhzvjhhl0r2ixz9vkgnqkrnnk772253zy7xkpadj7ws69jsf"; depends=[hydroGOF lattice]; }; +kyotil = derive { name="kyotil"; version="2015.5-20"; sha256="08rpprs58c100x7sjxhvxm76msy888pvr1hy40k1b8gw0yw7fks7"; depends=[]; }; kza = derive { name="kza"; version="3.0.0"; sha256="0v811ln9vg7msvks9lpgmdi39p01342yi8fj180aclha3mfk6gfw"; depends=[polynom]; }; kzft = derive { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; }; kzs = derive { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l2boost = derive { name="l2boost"; version="1.0"; sha256="1p0sbvlnax4ba4wjkh3r0bmjs601k590g7bdfk6wxvlj42jxcnkl"; depends=[MASS]; }; -laGP = derive { name="laGP"; version="1.1-3"; sha256="11blzdnil0nw3q5vf4y1rv7l4zxjx8ilynv9jpkm14azv5dsr8jw"; depends=[tgp]; }; -labdsv = derive { name="labdsv"; version="1.7-0"; sha256="1r5vbmdijcrw0n3phdmfv8wiy7s08pidvhac4pnsxfmf98f74jby"; depends=[mgcv MASS rgl cluster]; }; +laGP = derive { name="laGP"; version="1.1-5"; sha256="15p958c95a68gr2xs8aw0l0sp0appv6islfbidlvxm8ph252hw6d"; depends=[tgp]; }; +labdsv = derive { name="labdsv"; version="1.7-0"; sha256="1r5vbmdijcrw0n3phdmfv8wiy7s08pidvhac4pnsxfmf98f74jby"; depends=[cluster MASS mgcv rgl]; }; label_switching = derive { name="label.switching"; version="1.3"; sha256="05kbxvrp0lm5913lhy7pgxr9cq64sm5hiz6ydmmgfmbmfirrcqyx"; depends=[combinat lpSolve]; }; labeledLoop = derive { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; labeling = derive { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; }; @@ -4175,12 +4266,13 @@ labeltodendro = derive { name="labeltodendro"; version="1.3"; sha256="13kpmv26zz labstatR = derive { name="labstatR"; version="1.0.7"; sha256="1p6xav9cb7yx3n8rkh8xm1jkykf3xw974id49j558hmayq47ad4f"; depends=[]; }; laeken = derive { name="laeken"; version="0.4.6"; sha256="1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"; depends=[boot MASS]; }; laercio = derive { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; -lakemorpho = derive { name="lakemorpho"; version="1.0"; sha256="0kxd493cccs24qqyw58110d2v5w8560qfnbm6qz7aki0xa7kaqrg"; depends=[maptools rgdal raster rgeos sp geosphere]; }; +lakemorpho = derive { name="lakemorpho"; version="1.0"; sha256="0kxd493cccs24qqyw58110d2v5w8560qfnbm6qz7aki0xa7kaqrg"; depends=[geosphere maptools raster rgdal rgeos sp]; }; laketemps = derive { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; +lamW = derive { name="lamW"; version="0.1-1"; sha256="1ndf3rkkp87pivhymyqa3n5ng5y1kaa79ay84p4yk4z4h2887nq3"; depends=[Rcpp]; }; lambda_r = derive { name="lambda.r"; version="1.1.7"; sha256="1lxzrwyminc3dfb07pbn1rmj45kplxgsb17b06pzflj728knbqwa"; depends=[]; }; -lambda_tools = derive { name="lambda.tools"; version="1.0.6"; sha256="13yxrgsam47adv08zl01harjq37pccfsar105b6ccf2qv3lrkdk7"; depends=[lambda_r]; }; +lambda_tools = derive { name="lambda.tools"; version="1.0.7"; sha256="1hskmsd51lvfc634r6bb23vfz1vdkpbs9zac3a022cgqvhvnbmxb"; depends=[lambda_r]; }; landpred = derive { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; }; -landsat = derive { name="landsat"; version="1.0.8"; sha256="07zvj1yyryxk7rwgcrf1kl32p2karkkqz6xrnwy1096dg9iw2js7"; depends=[rgdal sp lmodel2 mgcv]; }; +landsat = derive { name="landsat"; version="1.0.8"; sha256="07zvj1yyryxk7rwgcrf1kl32p2karkkqz6xrnwy1096dg9iw2js7"; depends=[lmodel2 mgcv rgdal sp]; }; languageR = derive { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; }; lar = derive { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; lars = derive { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; @@ -4189,24 +4281,25 @@ lasso2 = derive { name="lasso2"; version="1.2-19"; sha256="0zkwjsd42a6z4gylq9xbs lassoscore = derive { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; lassoshooting = derive { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; latdiag = derive { name="latdiag"; version="0.2-1"; sha256="1xjy6as3wjrl2y1lc5fgrbhqqcvrhdan89mpgvk9cpx71wxv95vc"; depends=[]; }; -latentnet = derive { name="latentnet"; version="2.7.0"; sha256="0g0a2s00f6rc9r6vmwm32489qqiwihcllmypc2wgqwayfmy8innn"; depends=[statnet_common network ergm sna mvtnorm abind coda]; }; +latentnet = derive { name="latentnet"; version="2.7.0"; sha256="0g0a2s00f6rc9r6vmwm32489qqiwihcllmypc2wgqwayfmy8innn"; depends=[abind coda ergm mvtnorm network sna statnet_common]; }; lattice = derive { name="lattice"; version="0.20-31"; sha256="1b3m3rg1zd8ssk5jjswk5y93js89vh6939kfajh6i6wphndxigb1"; depends=[]; }; -latticeDensity = derive { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[splancs spdep spatstat spam]; }; -latticeExtra = derive { name="latticeExtra"; version="0.6-26"; sha256="16x00sg76mga8p5q5ybaxs34q0ibml8wq91822faj5fmg7r1050d"; depends=[RColorBrewer lattice]; }; +latticeDensity = derive { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[spam spatstat spdep splancs]; }; +latticeExtra = derive { name="latticeExtra"; version="0.6-26"; sha256="16x00sg76mga8p5q5ybaxs34q0ibml8wq91822faj5fmg7r1050d"; depends=[lattice RColorBrewer]; }; lava = derive { name="lava"; version="1.4.0"; sha256="0zf62xk2j1gbwxqglq6lsxs3f7fb0hynnlfh1w870xz8imgf20yp"; depends=[numDeriv]; }; lava_tobit = derive { name="lava.tobit"; version="0.4-7"; sha256="1da98d5pndlbbw37k64fmr2mi1hvkhjxsmm3y9p4b772pz9i1pvj"; depends=[lava mvtnorm survival]; }; lavaan = derive { name="lavaan"; version="0.5-18"; sha256="0ih5wvhmxln3w5h7q5w6gsmbs3w8118l9hc2afgsnzpg8a5jy1n3"; depends=[MASS mnormt pbivnorm quadprog]; }; -lavaan_survey = derive { name="lavaan.survey"; version="1.1"; sha256="1vscv165kilkc00pgs2s9qn404l3rv45zc9kzmrghxz42jsy04zc"; depends=[lavaan survey MASS Matrix]; }; -lawstat = derive { name="lawstat"; version="2.5"; sha256="01y00jfapmh3bmrmz740flkahw0b8im8sp5ac8hsp4pf9k09cvws"; depends=[mvtnorm VGAM Kendall Hmisc]; }; +lavaan_survey = derive { name="lavaan.survey"; version="1.1"; sha256="1vscv165kilkc00pgs2s9qn404l3rv45zc9kzmrghxz42jsy04zc"; depends=[lavaan MASS Matrix survey]; }; +lawn = derive { name="lawn"; version="0.1.0"; sha256="0vv2qmz6a692ammh3jxnpq3b669s8cx61krmb97jlwjy2nb6r81i"; depends=[jsonlite magrittr V8]; }; +lawstat = derive { name="lawstat"; version="2.5"; sha256="01y00jfapmh3bmrmz740flkahw0b8im8sp5ac8hsp4pf9k09cvws"; depends=[Hmisc Kendall mvtnorm VGAM]; }; lazy = derive { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; }; lazyData = derive { name="lazyData"; version="1.0.3"; sha256="1i4jry54id8hhfla77pwk3rj2cci6na36hxj7k35k8lx666fdam2"; depends=[]; }; lazyWeave = derive { name="lazyWeave"; version="2.2.5"; sha256="18j31lbbplxvrz4wnq7hfw9qcx1s0y4c34lbxwly2wyrvzjhxybl"; depends=[Hmisc survival]; }; lazyeval = derive { name="lazyeval"; version="0.1.10"; sha256="02qfpn2fmy78vx4jxr7g7rhqzcm1kcivfwai7lbh0vvpawia0qwh"; depends=[]; }; -lba = derive { name="lba"; version="1.0"; sha256="108kfffwpvl6rjcmmxswprxxqcv1sj7w9mmca4pwaiprad7p7x59"; depends=[MASS alabama plotrix ca]; }; -lbfgs = derive { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp Rcpp]; }; +lba = derive { name="lba"; version="1.0"; sha256="108kfffwpvl6rjcmmxswprxxqcv1sj7w9mmca4pwaiprad7p7x59"; depends=[alabama ca MASS plotrix]; }; +lbfgs = derive { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; }; lbfgsb3 = derive { name="lbfgsb3"; version="2015-2.13"; sha256="1jpy0j52w8kc8qnwcavjp3smvdwm1qgmswa9jyljpf72ln237vqw"; depends=[numDeriv]; }; lbiassurv = derive { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; }; -lcd = derive { name="lcd"; version="0.7-3"; sha256="1jnnw15d4s8yb5z5jnzvmlrxv5x6n3h7wcdiz2nw4vfiqncnpwx4"; depends=[igraph MASS ggm]; }; +lcd = derive { name="lcd"; version="0.7-3"; sha256="1jnnw15d4s8yb5z5jnzvmlrxv5x6n3h7wcdiz2nw4vfiqncnpwx4"; depends=[ggm igraph MASS]; }; lcda = derive { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; }; lcmm = derive { name="lcmm"; version="1.7.2"; sha256="1sg5vx3nx8ik5z2c2pi3p9h5b5k0z7m1jc404jkv3gr17nilcp4i"; depends=[survival]; }; lctools = derive { name="lctools"; version="0.2-2"; sha256="0yf30gjqp7adjw0l129xzmaj2wmc6hbqhdw35dfwwcxk5nys5dq0"; depends=[reshape weights]; }; @@ -4215,89 +4308,91 @@ ldbounds = derive { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dr ldlasso = derive { name="ldlasso"; version="3.2"; sha256="0ij68zvgm8dfd2qwx6h6ygndac29qa0ddpf11z959v06n8jsnk11"; depends=[GenABEL quadprog]; }; ldr = derive { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; leaderCluster = derive { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; -leafletR = derive { name="leafletR"; version="0.3-2"; sha256="183qrfmcanb4c5n3w0vd9xb5mcygjfjc4qr1mzz5jxgjd039g28n"; depends=[brew jsonlite]; }; -leapp = derive { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[MASS corpcor]; }; +leafletR = derive { name="leafletR"; version="0.3-3"; sha256="00xdmlv6wc47lzlm43d2klyzcqljsgrfrmd5cv8brkvvcsyj57kq"; depends=[brew jsonlite]; }; +leapp = derive { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; }; leaps = derive { name="leaps"; version="2.9"; sha256="1ax9v983401hvb6cdswkc1k7j62j8yk6ds22qdj24vdidhdz5979"; depends=[]; }; learningr = derive { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; }; -learnstats = derive { name="learnstats"; version="0.1.0"; sha256="03rlyh7ynxxvnkx8r8611ss36aqc8mdk6w2kjajmmsdwzp81lgnc"; depends=[RcmdrPlugin_epack ggplot2 shiny rmarkdown Rcmdr]; }; -lefse = derive { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape picante geiger fBasics SDMTools vegan]; }; +learnstats = derive { name="learnstats"; version="0.1.0"; sha256="03rlyh7ynxxvnkx8r8611ss36aqc8mdk6w2kjajmmsdwzp81lgnc"; depends=[ggplot2 Rcmdr RcmdrPlugin_epack rmarkdown shiny]; }; +lefse = derive { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; }; leiv = derive { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; -lessR = derive { name="lessR"; version="3.3.1"; sha256="1nwvkxi9q7fsjgrfpa16ry54cyk2ja5cy4cq0xzqya6wn04mbicg"; depends=[car leaps MBESS foreign gdata triangle]; }; +lessR = derive { name="lessR"; version="3.3.1"; sha256="1nwvkxi9q7fsjgrfpa16ry54cyk2ja5cy4cq0xzqya6wn04mbicg"; depends=[car foreign gdata leaps MBESS triangle]; }; lestat = derive { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4p241y4xz0s3ir56kxjqw23g6m80v"; depends=[MASS]; }; -letsR = derive { name="letsR"; version="2.1"; sha256="0jgc6k2hbpbr7kl42n01mff7pzjz60zd8mchrfhzgd797pwcqlbq"; depends=[raster maps XML geosphere fields maptools sp rgdal]; }; +letsR = derive { name="letsR"; version="2.1"; sha256="0jgc6k2hbpbr7kl42n01mff7pzjz60zd8mchrfhzgd797pwcqlbq"; depends=[fields geosphere maps maptools raster rgdal sp XML]; }; lfactors = derive { name="lfactors"; version="0.4.0"; sha256="1f4p5mp6m11njrj421vjl5398laicgyg8m04srshfmpi74hf1nb9"; depends=[]; }; -lfe = derive { name="lfe"; version="2.2-1699"; sha256="1a2y4f25isvnvk0yg6j36s729makr8b1bzwivx4x67aqg8fd09rv"; depends=[Matrix Formula xtable]; }; -lfl = derive { name="lfl"; version="1.0"; sha256="10ypsnzjzygihz019clwnf3gv5b64d873231pjkp772k1n3wgv9a"; depends=[Rcpp foreach forecast plyr tseries e1071 zoo Rcpp]; }; -lfstat = derive { name="lfstat"; version="0.6.1"; sha256="0i3zrinvjxlg9w5zqrv8wzy15vxvi2gw3jrlfs4rddkxnp98ya9d"; depends=[lattice lmom lmomRFA latticeExtra]; }; +lfe = derive { name="lfe"; version="2.3-1709"; sha256="0q6va05n38225a7sbk0ykdrygzjk6js6afm2vyy5fac1hbvihb05"; depends=[Formula Matrix xtable]; }; +lfl = derive { name="lfl"; version="1.1"; sha256="1hrdhp2r17qwns5hya9sl03q93h934whqyqsn8mdrsavc64i649v"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; +lfstat = derive { name="lfstat"; version="0.6.1"; sha256="0i3zrinvjxlg9w5zqrv8wzy15vxvi2gw3jrlfs4rddkxnp98ya9d"; depends=[lattice latticeExtra lmom lmomRFA]; }; lga = derive { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; }; lgarch = derive { name="lgarch"; version="0.5"; sha256="01y5p3w4i1yfxb647pkdazqn9yac1p6jp7rk92ddxnvvjb6fdp59"; depends=[zoo]; }; -lgcp = derive { name="lgcp"; version="1.3-9"; sha256="093rxvb4irmf04nx1j5zrgh8k0jw78zl9qrmkn314vaqyn3b4608"; depends=[spatstat sp raster RandomFields iterators ncdf rpanel fields maptools Matrix rgeos]; }; +lgcp = derive { name="lgcp"; version="1.3-9"; sha256="093rxvb4irmf04nx1j5zrgh8k0jw78zl9qrmkn314vaqyn3b4608"; depends=[fields iterators maptools Matrix ncdf RandomFields raster rgeos rpanel sp spatstat]; }; lgtdl = derive { name="lgtdl"; version="1.1.3"; sha256="00lffc60aq1qjyy66nygaypdky9rypy607mr8brwimjn8k1f0gx4"; depends=[]; }; lhs = derive { name="lhs"; version="0.10"; sha256="1hc23g04b6nsg8xffkscwsq2mr725r6s296iqll887b3mnm3xaqz"; depends=[]; }; -libamtrack = derive { name="libamtrack"; version="0.5.5"; sha256="0v2h4ficf87ai3h2liw8j7428k0bzzb59zini2vskwhcqb7ky7yw"; depends=[]; }; -lifecontingencies = derive { name="lifecontingencies"; version="1.1.6"; sha256="07gvq93p2f8s4a43h596xmzifnx1jwnfyg5giqhlfvxnq6wdbvrr"; depends=[markovchain Rcpp Rcpp]; }; -likeLTD = derive { name="likeLTD"; version="5.5.0"; sha256="111wdszkk2bdi9sz6gfih32kib0ig9bp4xlq6wl5r5zx3nrlj5zb"; depends=[DEoptim ggplot2 gtools rtf gdata]; }; +libamtrack = derive { name="libamtrack"; version="0.6.1"; sha256="0kg3lp1f40hymr2nxq7immxnqryavad91xp6l6x4qyp0cb02870a"; depends=[]; }; +lifecontingencies = derive { name="lifecontingencies"; version="1.1.6"; sha256="07gvq93p2f8s4a43h596xmzifnx1jwnfyg5giqhlfvxnq6wdbvrr"; depends=[markovchain Rcpp]; }; +likeLTD = derive { name="likeLTD"; version="5.5.0"; sha256="111wdszkk2bdi9sz6gfih32kib0ig9bp4xlq6wl5r5zx3nrlj5zb"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; likelihood = derive { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; -likert = derive { name="likert"; version="1.2"; sha256="1x1mlaqzwr15xzcfq9934jxb3m5irvw6yivirrj45wscxn3kz5s1"; depends=[ggplot2 xtable psych reshape gridExtra plyr]; }; -limSolve = derive { name="limSolve"; version="1.5.5.1"; sha256="0anrbhw07mird9fj96x1p0gynjnjcj07gpwlq0ffjlqq2qmkzgqs"; depends=[quadprog lpSolve MASS]; }; +likelihoodAsy = derive { name="likelihoodAsy"; version="0.40"; sha256="1zgqs9pcsb45s414kqbhvsb9cxag0imla682981lqvrbli13p2kg"; depends=[alabama cond nleqslv pracma Rsolnp]; }; +likert = derive { name="likert"; version="1.2"; sha256="1x1mlaqzwr15xzcfq9934jxb3m5irvw6yivirrj45wscxn3kz5s1"; depends=[ggplot2 gridExtra plyr psych reshape xtable]; }; +limSolve = derive { name="limSolve"; version="1.5.5.1"; sha256="0anrbhw07mird9fj96x1p0gynjnjcj07gpwlq0ffjlqq2qmkzgqs"; depends=[lpSolve MASS quadprog]; }; limitplot = derive { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; }; linLIR = derive { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; linbin = derive { name="linbin"; version="0.1.0"; sha256="0812m19kfscb0d23rv0llziapd269r7zlm2yq8h3yp8c8jl8gdb1"; depends=[]; }; -lineup = derive { name="lineup"; version="0.34-1"; sha256="0p6gxbv8xdrhgk8zdlnqrybald9vqz717czb49b123h84rjr2f19"; depends=[qtl class]; }; +lineup = derive { name="lineup"; version="0.34-1"; sha256="0p6gxbv8xdrhgk8zdlnqrybald9vqz717czb49b123h84rjr2f19"; depends=[class qtl]; }; linkR = derive { name="linkR"; version="1.0.0"; sha256="1l936i74h1s42w1d7nn220rjygc6n0jkjidvix1df2wlacnswzpg"; depends=[svgViewR]; }; -linkcomm = derive { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[igraph RColorBrewer dynamicTreeCut]; }; +linkcomm = derive { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkim = derive { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; }; linprog = derive { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; }; -lint = derive { name="lint"; version="0.3"; sha256="0lkrn5nsizyixhdp5njxgrgwmygwr663jxv5k9a22a63x1qbwpiq"; depends=[plyr harvestr stringr dostats foreach]; }; -lintr = derive { name="lintr"; version="0.2.0"; sha256="14jaghvd0kz271j6wl8j0y31h48ajvgzd68drdi6pv9nrxqs046n"; depends=[rex crayon codetools stringdist testthat digest igraph]; }; -liso = derive { name="liso"; version="0.2"; sha256="072l7ac1fbkh8baiiwx2psiv1sd7h8ggmgk5xkzml069ihhldj5i"; depends=[MASS Iso]; }; +lint = derive { name="lint"; version="0.3"; sha256="0lkrn5nsizyixhdp5njxgrgwmygwr663jxv5k9a22a63x1qbwpiq"; depends=[dostats foreach harvestr plyr stringr]; }; +lintr = derive { name="lintr"; version="0.2.0"; sha256="14jaghvd0kz271j6wl8j0y31h48ajvgzd68drdi6pv9nrxqs046n"; depends=[codetools crayon digest igraph rex stringdist testthat]; }; +liso = derive { name="liso"; version="0.2"; sha256="072l7ac1fbkh8baiiwx2psiv1sd7h8ggmgk5xkzml069ihhldj5i"; depends=[Iso MASS]; }; lisp = derive { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; }; lisrelToR = derive { name="lisrelToR"; version="0.1.4"; sha256="0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5"; depends=[]; }; -list = derive { name="list"; version="7.1"; sha256="1avbps4di6rhy6rvfyky336zqab65ibfjw2hwp1r713psbmf9z16"; depends=[sandwich VGAM magic gamlss_dist MASS quadprog arm corpcor mvtnorm coda]; }; -llama = derive { name="llama"; version="0.8.1"; sha256="0pv411kj4n3pi2yg35jzjd4zfxkqksbp049v6d9xd2q14i9kphv2"; depends=[mlr rJava parallelMap ggplot2 checkmate]; }; -lle = derive { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[scatterplot3d MASS snowfall]; }; -lllcrc = derive { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[data_table combinat VGAM plyr]; }; +list = derive { name="list"; version="8.0"; sha256="09qpcsygs2clbgd42v6klgh1vjhv64s56ixxqlcpg9v7xqnms56j"; depends=[coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; +listenv = derive { name="listenv"; version="0.3.0"; sha256="14zi2zs6jxcq0j5knf5nlr06xk7n0vvfgbh2lqdjq0pvjbm8j08b"; depends=[]; }; +llama = derive { name="llama"; version="0.8.1"; sha256="0pv411kj4n3pi2yg35jzjd4zfxkqksbp049v6d9xd2q14i9kphv2"; depends=[checkmate ggplot2 mlr parallelMap rJava]; }; +lle = derive { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[MASS scatterplot3d snowfall]; }; +lllcrc = derive { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[combinat data_table plyr VGAM]; }; lm_beta = derive { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; -lm_br = derive { name="lm.br"; version="2.6"; sha256="1f7cxd6ksspgpz2lnppyb466lgis5isk0bj8z4bjiwk4abg4lg3i"; depends=[Rcpp Rcpp]; }; -lmSupport = derive { name="lmSupport"; version="2.9.1"; sha256="11c86ji7srv80zlrp6c8ark312xzvajig8flc5qm77dgacik8daq"; depends=[car psych gvlma AICcmodavg lme4 pbkrtest]; }; -lme4 = derive { name="lme4"; version="1.1-7"; sha256="0v9vl9rspakyw2dmcl5lbhv1nlg10yhgdvi3gpfnizln7xw9ksyp"; depends=[Matrix Rcpp MASS nlme lattice minqa nloptr Rcpp RcppEigen]; }; -lmeNB = derive { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[numDeriv statmod lmeNBBayes]; }; +lm_br = derive { name="lm.br"; version="2.6"; sha256="1f7cxd6ksspgpz2lnppyb466lgis5isk0bj8z4bjiwk4abg4lg3i"; depends=[Rcpp]; }; +lmSupport = derive { name="lmSupport"; version="2.9.2"; sha256="0mdl5ih7zzxynawxx4prh08nq451x74bfw4ga7cygl2ahi6vqq50"; depends=[AICcmodavg car gvlma lme4 pbkrtest psych]; }; +lme4 = derive { name="lme4"; version="1.1-7"; sha256="0v9vl9rspakyw2dmcl5lbhv1nlg10yhgdvi3gpfnizln7xw9ksyp"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; +lmeNB = derive { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; lmeVarComp = derive { name="lmeVarComp"; version="1.0"; sha256="17zrl33h4lcd8lpdv3d12h5afj8nxr2lyw6699zq4fds2chbq66l"; depends=[]; }; lmec = derive { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; }; lmenssp = derive { name="lmenssp"; version="1.0"; sha256="0a1q9ax0pnz9gcv4nzgay9lznaz9gp27jj6vp6la7vfhrfg5qcg6"; depends=[MASS nlme]; }; -lmerTest = derive { name="lmerTest"; version="2.0-25"; sha256="13psyrll5srxahyk4fhp77fds9mxgnargpv2wxjpy3cv8f5b1vpm"; depends=[Matrix lme4 plyr MASS Hmisc ggplot2]; }; +lmerTest = derive { name="lmerTest"; version="2.0-25"; sha256="13psyrll5srxahyk4fhp77fds9mxgnargpv2wxjpy3cv8f5b1vpm"; depends=[ggplot2 Hmisc lme4 MASS Matrix plyr]; }; lmf = derive { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; }; -lmfor = derive { name="lmfor"; version="1.1"; sha256="0bbcgpcx0xjla128w80xlxp6i6hnrk4wjwqih66zvyjaf5sz7wx9"; depends=[nlme MASS]; }; +lmfor = derive { name="lmfor"; version="1.1"; sha256="0bbcgpcx0xjla128w80xlxp6i6hnrk4wjwqih66zvyjaf5sz7wx9"; depends=[MASS nlme]; }; lmm = derive { name="lmm"; version="1.0"; sha256="0x5ikb1db99dsn476mf4253dlznlxa1cwnykg1nwnm2vy5qym2fq"; depends=[]; }; -lmmfit = derive { name="lmmfit"; version="1.0"; sha256="06mzmx7md7qw5mfhgdljc7i40sx9yrx7j57xbbp3fhl2zs1dpb4g"; depends=[nlme MASS]; }; +lmmfit = derive { name="lmmfit"; version="1.0"; sha256="06mzmx7md7qw5mfhgdljc7i40sx9yrx7j57xbbp3fhl2zs1dpb4g"; depends=[MASS nlme]; }; lmmlasso = derive { name="lmmlasso"; version="0.1-2"; sha256="1mvd38k9npyc05a2x7z0908qz9x4srqgzq9yjyyggplqfrl4dgsz"; depends=[emulator miscTools penalized]; }; -lmmot = derive { name="lmmot"; version="0.1.2"; sha256="1c7cn1g1fl8nwjzm78a8qgw9da170f1q0z5vxl446f167ix5ppkp"; depends=[maxLik MASS]; }; -lmms = derive { name="lmms"; version="1.2"; sha256="12wli7iwnihq42pa1jy1ml4y3l93grwrv9n7vpgp5wp1hj4d1s8c"; depends=[nlme lmeSplines reshape gdata gplots ggplot2]; }; +lmmot = derive { name="lmmot"; version="0.1.2"; sha256="1c7cn1g1fl8nwjzm78a8qgw9da170f1q0z5vxl446f167ix5ppkp"; depends=[MASS maxLik]; }; +lmms = derive { name="lmms"; version="1.2"; sha256="12wli7iwnihq42pa1jy1ml4y3l93grwrv9n7vpgp5wp1hj4d1s8c"; depends=[gdata ggplot2 gplots lmeSplines nlme reshape]; }; lmodel2 = derive { name="lmodel2"; version="1.7-2"; sha256="0dyzxflr82k7ns824zlycj502jx3qmgrck125im2k2da34ir3m3q"; depends=[]; }; lmom = derive { name="lmom"; version="2.5"; sha256="0s2x8k6p71hxdqggy8ajk7p9p040b9xr3lm49g31z3kcsmzvk23q"; depends=[]; }; lmomRFA = derive { name="lmomRFA"; version="3.0-1"; sha256="0lf8n6bhdv3px6p60smghvmwsbgawvjrmgy2dfhs517n67pxg30i"; depends=[lmom]; }; lmomco = derive { name="lmomco"; version="2.1.4"; sha256="02c2yhfr08hzlyn2nmfdfvmc3xrc3pp4agc6nkg4w6kk74r003h1"; depends=[]; }; -lmtest = derive { name="lmtest"; version="0.9-33"; sha256="1ycmxjrxf41mnbgakdmn4y2kmgp4rkj7v3nqwqnlc6gdfdmac73s"; depends=[zoo]; }; -loa = derive { name="loa"; version="0.2.22"; sha256="13j4d4d35nd2ssmkghpd6azysmy7g8mc9y3glkzjnddp1xxz8icn"; depends=[lattice MASS png RgoogleMaps RColorBrewer]; }; +lmtest = derive { name="lmtest"; version="0.9-34"; sha256="0bhdfwrrwjkmlw0wwx7rh6lhdjp68p7db5zfzginnv3dxmksvvl6"; depends=[zoo]; }; +loa = derive { name="loa"; version="0.2.22"; sha256="13j4d4d35nd2ssmkghpd6azysmy7g8mc9y3glkzjnddp1xxz8icn"; depends=[lattice MASS png RColorBrewer RgoogleMaps]; }; localdepth = derive { name="localdepth"; version="0.5-7"; sha256="0h0y74xnhdqa7y51ljmpz7ayznppvy2ll06wfds6200lb9cxgr7k"; depends=[circular]; }; -localgauss = derive { name="localgauss"; version="0.34"; sha256="04bn777kcxaa5s4zf0r9gclar32y9wpzqnx2rxxhqrxyy419gw37"; depends=[ggplot2 MASS foreach matrixStats]; }; +localgauss = derive { name="localgauss"; version="0.34"; sha256="04bn777kcxaa5s4zf0r9gclar32y9wpzqnx2rxxhqrxyy419gw37"; depends=[foreach ggplot2 MASS matrixStats]; }; localsolver = derive { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; }; locfit = derive { name="locfit"; version="1.5-9.1"; sha256="0lafrmq1q7x026m92h01hc9cjjiximqqi3v1g2hw7ai9vf7i897m"; depends=[lattice]; }; -locits = derive { name="locits"; version="1.4"; sha256="1q9vsf5h4n7r4gy1dwdhfyq3n0rn33akb3nx6yzinncj4w4cqq0h"; depends=[wavethresh igraph]; }; +locits = derive { name="locits"; version="1.4"; sha256="1q9vsf5h4n7r4gy1dwdhfyq3n0rn33akb3nx6yzinncj4w4cqq0h"; depends=[igraph wavethresh]; }; locpol = derive { name="locpol"; version="0.6-0"; sha256="1zpdh3g7yx3rcn3rhlc3dm19c4b9kx2k8wy8vkwh744a1kysvdga"; depends=[]; }; -lodGWAS = derive { name="lodGWAS"; version="1.0-3"; sha256="1fb70p2mvp742557ns44ilb9m85aqq59p5x6vdrmb22hczsjj6q4"; depends=[survival rms]; }; -loe = derive { name="loe"; version="1.0"; sha256="11wjzq4h7qjrnrj1zg3msg1ksld9c3r3n3biamf2hz8zvi1asvqv"; depends=[igraph MASS vegan Matrix]; }; +lodGWAS = derive { name="lodGWAS"; version="1.0-3"; sha256="1fb70p2mvp742557ns44ilb9m85aqq59p5x6vdrmb22hczsjj6q4"; depends=[rms survival]; }; +loe = derive { name="loe"; version="1.0"; sha256="11wjzq4h7qjrnrj1zg3msg1ksld9c3r3n3biamf2hz8zvi1asvqv"; depends=[igraph MASS Matrix vegan]; }; log4r = derive { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qakxdsijfh3272spc8xrmdmyw6rj"; depends=[]; }; -logbin = derive { name="logbin"; version="1.0"; sha256="17vabb348kczn839mhwshn20qgrdnpd0ll81hb8bcsricm6dqhna"; depends=[glm2]; }; +logbin = derive { name="logbin"; version="1.2"; sha256="1jfkg5rx51hm2skwwafqiw6ajdijdm0cniral3j5flidinsbsbcm"; depends=[glm2]; }; logconPH = derive { name="logconPH"; version="1.5"; sha256="05fkibgh5nzs8c4f39kzg4zyh2dfhg1k69hlx7l8p442snajsg92"; depends=[]; }; logconcens = derive { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; }; -logcondens = derive { name="logcondens"; version="2.1.2"; sha256="0lnsyjl77l9024pqncyxwivmj05f5mfa3563jql47jajaai0my8y"; depends=[ks]; }; -logcondens_mode = derive { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[logcondens distr]; }; -logcondiscr = derive { name="logcondiscr"; version="1.0.5"; sha256="170rg4rqch0mlhmc1zc59h271b57y3xfxrc3gh9pwvc9r11gw7k5"; depends=[Matrix mvtnorm cobs]; }; +logcondens = derive { name="logcondens"; version="2.1.3"; sha256="0fg7dsila67k80kbh1m1l69pb0pwwr893lkian7a8abx3a1qclij"; depends=[ks]; }; +logcondens_mode = derive { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; }; +logcondiscr = derive { name="logcondiscr"; version="1.0.5"; sha256="170rg4rqch0mlhmc1zc59h271b57y3xfxrc3gh9pwvc9r11gw7k5"; depends=[cobs Matrix mvtnorm]; }; logging = derive { name="logging"; version="0.7-103"; sha256="1sp7q217awizb6l8c9p5dix6skpq8j7w8i088x4mm0fc0qr1ba5c"; depends=[]; }; -logistf = derive { name="logistf"; version="1.21"; sha256="0cwbmd0mvj4wywpx7p4lhs70nhab7bfl6fzz2c4snn3ma6sy7x8c"; depends=[mice mgcv]; }; +logistf = derive { name="logistf"; version="1.21"; sha256="0cwbmd0mvj4wywpx7p4lhs70nhab7bfl6fzz2c4snn3ma6sy7x8c"; depends=[mgcv mice]; }; logitchoice = derive { name="logitchoice"; version="0.9.4"; sha256="1vkw7cwp7nwrsj9ifn4gz21zbw9da5rph9lr3w466zxkzdkbldqj"; depends=[]; }; logitnorm = derive { name="logitnorm"; version="0.8.29"; sha256="0wbdxh3n44nzb6c0ahyd8gndfql1y56fns2bkmzqi3nxy9blhx18"; depends=[]; }; loglognorm = derive { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; @@ -4308,144 +4403,144 @@ lomb = derive { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvb longCatEDA = derive { name="longCatEDA"; version="0.17"; sha256="1yb0117ycj4079590mrx3lg9m5k7xd1dhb779r3rmnww94pmvja9"; depends=[]; }; longclust = derive { name="longclust"; version="1.2"; sha256="1m270fyvfz0w19p9xdv7ihy19nhrhjq2akymbp774073crznmmw0"; depends=[]; }; longitudinal = derive { name="longitudinal"; version="1.1.11"; sha256="0rzi177v9k6gy1wv06vf81r1q0ml81ssf83v0z8rpmx5j91d71ac"; depends=[corpcor]; }; -longitudinalData = derive { name="longitudinalData"; version="2.2"; sha256="1kdgnkhk39a9r4fq6zmrvzcvs7qjd21knpzfjglxyx723r9p3fs7"; depends=[clv class rgl misc3d]; }; +longitudinalData = derive { name="longitudinalData"; version="2.3"; sha256="0ld2saga04if2zp3ylz720q8451f7a7aiva5hpj471wxd0948592"; depends=[class clv misc3d rgl]; }; longmemo = derive { name="longmemo"; version="1.0-0"; sha256="1jnck5nfwxywj74awl4s9i9jn431655mmi85g0nfbg4y71aprzdc"; depends=[]; }; -longpower = derive { name="longpower"; version="1.0-11"; sha256="1l1icy653d67wlvigcya8glhqh2746cr1vh1khx36qjhfjz6wgyf"; depends=[Matrix lme4 nlme]; }; +longpower = derive { name="longpower"; version="1.0-11"; sha256="1l1icy653d67wlvigcya8glhqh2746cr1vh1khx36qjhfjz6wgyf"; depends=[lme4 Matrix nlme]; }; loop = derive { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; -loopr = derive { name="loopr"; version="1.0.0"; sha256="19gk3phi45ylkvdfyyr0j0r13ndz7wxl73x0znp2n59vazdgy24w"; depends=[plyr dplyr magrittr lazyeval R6]; }; -lordif = derive { name="lordif"; version="0.2-2"; sha256="0898k5w9wky318k8x0zknjqdzdify0yyrnb1506j341l4n1bm04s"; depends=[MASS msm mvtnorm polycor sfsmisc ltm Hmisc rms]; }; +loopr = derive { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[dplyr lazyeval magrittr plyr R6]; }; +lordif = derive { name="lordif"; version="0.2-2"; sha256="0898k5w9wky318k8x0zknjqdzdify0yyrnb1506j341l4n1bm04s"; depends=[Hmisc ltm MASS msm mvtnorm polycor rms sfsmisc]; }; lorec = derive { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; lpSolve = derive { name="lpSolve"; version="5.6.11"; sha256="0mgpns9wflqaz9ynwxwkvmc1694yhf275wgrqfjfy3qxz1hxq7s0"; depends=[]; }; lpSolveAPI = derive { name="lpSolveAPI"; version="5.5.2.0-14"; sha256="1ffmb9xv6m25ii4n7v576g8xw31qlsxd99ka8cjdhqs7fbr4ng5x"; depends=[]; }; lpc = derive { name="lpc"; version="1.0.2"; sha256="1r6ynkhqjic1m7fqrqsp7f8rpxqih5idn4j96fqrdj8nj01znv29"; depends=[]; }; lpint = derive { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; -lpme = derive { name="lpme"; version="1.0.1"; sha256="0f0xphlxl0ma3s2miadl74cb1l20cikqgk3nc1dg5ml05cqzhyxr"; depends=[Rcpp Rcpp RcppArmadillo]; }; +lpme = derive { name="lpme"; version="1.0.1"; sha256="0f0xphlxl0ma3s2miadl74cb1l20cikqgk3nc1dg5ml05cqzhyxr"; depends=[Rcpp RcppArmadillo]; }; lpmodeler = derive { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive { name="lpridge"; version="1.0-7"; sha256="0nkl70fwzra308bzlhjfpkxr8hpd8v1xdnah7nscxa10qlisgr2k"; depends=[]; }; lqa = derive { name="lqa"; version="1.0-3"; sha256="141r2cd9kybi6n9jbdsvhza8jdxxqch4z3qizvpazjy8qifng29q"; depends=[]; }; -lqmm = derive { name="lqmm"; version="1.5.1"; sha256="1myv2v2059vlni1npxyv6ii846aiqz1mvyz9r9n5vpzgz92abizi"; depends=[SparseGrid nlme]; }; +lqmm = derive { name="lqmm"; version="1.5.1"; sha256="1myv2v2059vlni1npxyv6ii846aiqz1mvyz9r9n5vpzgz92abizi"; depends=[nlme SparseGrid]; }; lrmest = derive { name="lrmest"; version="1.0"; sha256="1gdj8pmmzvs1li05pwhad63blhibq45xd1acajxsx06k7k21ajs7"; depends=[MASS]; }; lsa = derive { name="lsa"; version="0.73.1"; sha256="1af8s32hkri1hpngl9skd6s5x6vb8nqzgnkv0s38yvgsja4xm1g5"; depends=[SnowballC]; }; -lsbclust = derive { name="lsbclust"; version="1.0.2"; sha256="03vaf9l0fy3pdr3cqb937nw8s7ky25njc3fnl4hdpc8rj7m44hwf"; depends=[ggplot2 plyr clue gridExtra reshape2 Rcpp Rcpp]; }; +lsbclust = derive { name="lsbclust"; version="1.0.2"; sha256="03vaf9l0fy3pdr3cqb937nw8s7ky25njc3fnl4hdpc8rj7m44hwf"; depends=[clue ggplot2 gridExtra plyr Rcpp reshape2]; }; lsdv = derive { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; -lsgl = derive { name="lsgl"; version="1.0.123.1"; sha256="10q3f56yjgs3kvyk7b7d1xi06sa16pv9y3c6lsp1461whqvinpj4"; depends=[sglOptim Matrix sglOptim Rcpp RcppProgress RcppArmadillo BH]; }; +lsgl = derive { name="lsgl"; version="1.0.123.1"; sha256="10q3f56yjgs3kvyk7b7d1xi06sa16pv9y3c6lsp1461whqvinpj4"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; lshorth = derive { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; -lsmeans = derive { name="lsmeans"; version="2.17"; sha256="0jpyqrc84w1zxgw7vbrp2263fcbk8rahxq2lqhcf8by47xcgk5kk"; depends=[estimability coda multcomp plyr mvtnorm]; }; +lsmeans = derive { name="lsmeans"; version="2.18"; sha256="1wnpn4hngjcfr44apsw85g3x4wm3ma7msg2n4dnadj0w0zbf0fq4"; depends=[coda estimability multcomp mvtnorm plyr]; }; lspls = derive { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; }; lsr = derive { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; }; lss = derive { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; }; ltbayes = derive { name="ltbayes"; version="0.3"; sha256="1b35bwli08yzgv3idg86wz8fzpx7r5sx0ryr950rdh0n2jdml09q"; depends=[mcmc MHadaptive numDeriv]; }; ltm = derive { name="ltm"; version="1.0-0"; sha256="1igkgb0jy3mzlnp9s6avhcpplwijz5g3x26a3lavyy3d9fjpmfpa"; depends=[MASS msm polycor]; }; -ltmle = derive { name="ltmle"; version="0.9-5"; sha256="07z576ry6i73l4jp073l360gvhzfdq845x43vrpfq258h7mqhgg4"; depends=[Matrix]; }; +ltmle = derive { name="ltmle"; version="0.9-6"; sha256="0q65ha7j3q9myhsafcmjwyxjf486xw4c3d17gpdnsvq4zqgfsy16"; depends=[Matrix]; }; ltsa = derive { name="ltsa"; version="1.4.4"; sha256="06db0d4j0kqp4q6rpa3sawcsm5rfgdhzl8fl7cxivjbbyrfnszqp"; depends=[]; }; ltsbase = derive { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; }; ltsk = derive { name="ltsk"; version="1.0.3"; sha256="17l4mwggd4s39l6x1b6gvwgd6gjl0h37wfis1i6l9k6hiaqhb6vr"; depends=[fields]; }; -lubridate = derive { name="lubridate"; version="1.3.3"; sha256="1f07z3f90vbghsarwjzn2nj6qz8qyfkqalszx8cb5kliijdkwy8z"; depends=[plyr stringr memoise]; }; -luca = derive { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[survival genetics]; }; +lubridate = derive { name="lubridate"; version="1.3.3"; sha256="1f07z3f90vbghsarwjzn2nj6qz8qyfkqalszx8cb5kliijdkwy8z"; depends=[memoise plyr stringr]; }; +luca = derive { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[genetics survival]; }; lucid = derive { name="lucid"; version="1.2"; sha256="1rvc5d7sb0bcncw79g13i1rxjicngbpln9hq0qfdi7yx9hhrdpnz"; depends=[nlme]; }; lunar = derive { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; -lvm4net = derive { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[MASS ergm network ellipse igraph]; }; +lvm4net = derive { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; lxb = derive { name="lxb"; version="1.3"; sha256="0mvjk0s9bzvznjy0cxjsqv28f6jjzvr713b2346ym4cm0y4l3mir"; depends=[]; }; -lymphclon = derive { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[MASS expm corpcor]; }; +lymphclon = derive { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; }; m4fe = derive { name="m4fe"; version="0.1"; sha256="06lh45591z2lc6lw91vyn066x0m1zwxxfp6nbirp1rz901v843ph"; depends=[]; }; mAr = derive { name="mAr"; version="1.1-2"; sha256="0i9zp8n8i3fxldgvwj045scss533zsv8p476lsla294gp174njr7"; depends=[MASS]; }; mFilter = derive { name="mFilter"; version="0.1-3"; sha256="1cz9d8447iiy7sq47civ1lcjafqdqs40lzxm2a4alw4wy57hc2h6"; depends=[]; }; -mGSZ = derive { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[GSA MASS ismev]; }; -mQTL = derive { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[qtl MASS outliers]; }; -mRMRe = derive { name="mRMRe"; version="2.0.5"; sha256="1lhpamjy8dbk3lzjj0wj041cg99rw6925i9fq297c93jxq562414"; depends=[survival igraph]; }; +mGSZ = derive { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; }; +mQTL = derive { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; }; +mRMRe = derive { name="mRMRe"; version="2.0.5"; sha256="1lhpamjy8dbk3lzjj0wj041cg99rw6925i9fq297c93jxq562414"; depends=[igraph survival]; }; mRm = derive { name="mRm"; version="1.1.5"; sha256="0sbpk7z4ij917nw8wyvnm87iav95ybqrzvmsjy3r8nyq55bjzyn7"; depends=[]; }; maRketSim = derive { name="maRketSim"; version="0.9.2"; sha256="1cq17zjwyf4i5lcqgxqkw805s4mr6qp89blgpmpxy8gdrbfj93m4"; depends=[]; }; maSAE = derive { name="maSAE"; version="0.1-2"; sha256="18a1zbfmjhrmi3fgqd7vaicpsca59kp8r1003pwl7l4032p32fxk"; depends=[]; }; -maboost = derive { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[rpart C50]; }; -mada = derive { name="mada"; version="0.5.7"; sha256="0a2m1rb4d143v9732392xzvbg6x1k3l0g3zscgbx64m21kxshmgb"; depends=[mvtnorm ellipse mvmeta]; }; +maboost = derive { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; }; +mada = derive { name="mada"; version="0.5.7"; sha256="0a2m1rb4d143v9732392xzvbg6x1k3l0g3zscgbx64m21kxshmgb"; depends=[ellipse mvmeta mvtnorm]; }; mads = derive { name="mads"; version="0.1.2"; sha256="1hbanfa1wnfvfs0g8dcf5z4439v0pp3rqhxahiis03jlfxzgd841"; depends=[mrds]; }; madsim = derive { name="madsim"; version="1.1"; sha256="1d9mv769zia43krdfl43hp22cp5mdi3ycwj3kxyfcjrg23bjnyc0"; depends=[]; }; magic = derive { name="magic"; version="1.5-6"; sha256="1399w1zhz79nj8cdhslybncd9h6rylfhb548nv22ip0dxxdkyv0v"; depends=[abind]; }; -magicaxis = derive { name="magicaxis"; version="1.9.3"; sha256="0dxlqpxw82v9cxfp475ppd02ywvlg96b1cfj02fjvs04xfprhar0"; depends=[MASS plotrix sm]; }; -magma = derive { name="magma"; version="1.3.0-2"; sha256="0hgwjq30ksx2qg4q9fj57m27i96sci8hrfrqc2lw4hz18b6kkph4"; depends=[]; }; +magicaxis = derive { name="magicaxis"; version="1.9.4"; sha256="0kgr29q4v9aq10l6zkddgv93zl66yzwxx9jsnskkx3r0kk3rlxa3"; depends=[MASS plotrix sm]; }; magrittr = derive { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; -mailR = derive { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[rJava stringr R_utils]; }; +mailR = derive { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[R_utils rJava stringr]; }; makeProject = derive { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; mallet = derive { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; -managelocalrepo = derive { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[stringr assertthat]; }; -manifestoR = derive { name="manifestoR"; version="0.9-12"; sha256="1hz45555941b9jplac4l8l6h4dn387fp4nk873c17mds7xaxzidq"; depends=[NLP tm dplyr httr jsonlite functional]; }; +managelocalrepo = derive { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; +manifestoR = derive { name="manifestoR"; version="1.0-1"; sha256="1008bz2vsmhx0sx6kc55z8dhlfinbadagz4hd0p50c4q86ibl7lh"; depends=[dplyr functional httr jsonlite NLP psych tm zoo]; }; manipulate = derive { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; mapDK = derive { name="mapDK"; version="0.3.0"; sha256="03ksg47caxx3y97p3nsflwpc7i788jw874cixr9gjz756avwkmwp"; depends=[ggplot2 stringi]; }; -mapStats = derive { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[survey lattice maptools RColorBrewer Hmisc classInt sp colorspace reshape2]; }; +mapStats = derive { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapdata = derive { name="mapdata"; version="2.2-3"; sha256="1fhj34cgq6rniy0339qv2ghbs0aiq38h9jfwx7szb83yj37v7wm6"; depends=[maps]; }; mapfit = derive { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; -mapmisc = derive { name="mapmisc"; version="1.2.1"; sha256="1sds83cbsdfb6ac2y13fy1lm7bi27qzkkpjv1cjml8yjwcazfbfj"; depends=[sp raster]; }; +mapmisc = derive { name="mapmisc"; version="1.2.4"; sha256="07h237sgsycagn61rharb09q9s8da777hzngh4py1sbv6gfyqpv8"; depends=[raster sp]; }; mapplots = derive { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; }; mapproj = derive { name="mapproj"; version="1.2-2"; sha256="1fdb72hvcp6jm7rhvs8zdkya6ifs92lfqnmq5vj5amwckkxfidc6"; depends=[maps]; }; maps = derive { name="maps"; version="2.3-9"; sha256="1gzy81sl4vpr4hsnh4jsp5rd26jdkzsw99qxwfmbadjyf55q06wv"; depends=[]; }; -maptools = derive { name="maptools"; version="0.8-36"; sha256="0064b9qqv7241298dswv5kkkqf6y2iyn7dhjcyvfkqn4kvc9g2m8"; depends=[sp foreign lattice]; }; +maptools = derive { name="maptools"; version="0.8-36"; sha256="0064b9qqv7241298dswv5kkkqf6y2iyn7dhjcyvfkqn4kvc9g2m8"; depends=[foreign lattice sp]; }; maptpx = derive { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; mar1s = derive { name="mar1s"; version="2.1"; sha256="0psjva7nsgar5sj03adjx44pw0sdqnsd96m4g6k8d76pv30m1g7l"; depends=[cmrutils fda zoo]; }; -marelac = derive { name="marelac"; version="2.1.4"; sha256="0mm1rmaxrbhk6r9z62ns832p2q9fajq0jpvd3if3rg2wgdbb1505"; depends=[shape seacarb]; }; +marelac = derive { name="marelac"; version="2.1.4"; sha256="0mm1rmaxrbhk6r9z62ns832p2q9fajq0jpvd3if3rg2wgdbb1505"; depends=[seacarb shape]; }; marg = derive { name="marg"; version="1.2-2"; sha256="0j08zzcrj8nqsargi6xi50gy9pl4smmsp4b7ywlga7r1ga38g82r"; depends=[statmod survival]; }; markdown = derive { name="markdown"; version="0.7.7"; sha256="00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb"; depends=[mime]; }; -marked = derive { name="marked"; version="1.1.8"; sha256="1xsg0iy8mcy9b98bxmjr3y413xwblbhks3fcydbvjnry0k03gd5i"; depends=[lme4 R2admb truncnorm coda ggplot2 Matrix numDeriv Rcpp plyr optimx expm Rcpp]; }; -markovchain = derive { name="markovchain"; version="0.2"; sha256="03lmvnfdcn4s274ydi5i8xwwm8bl4fv64dwm8mb61nf0i5d0w6ky"; depends=[igraph Matrix matlab expm Rcpp RcppParallel Rcpp RcppParallel]; }; +marked = derive { name="marked"; version="1.1.8"; sha256="1xsg0iy8mcy9b98bxmjr3y413xwblbhks3fcydbvjnry0k03gd5i"; depends=[coda expm ggplot2 lme4 Matrix numDeriv optimx plyr R2admb Rcpp truncnorm]; }; +markovchain = derive { name="markovchain"; version="0.3"; sha256="176cdp99a1d2n8awzpx1mhlvqqp8wc7x37ha03pdsd8hmsb05m5g"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; -marmap = derive { name="marmap"; version="0.9.2"; sha256="1csi6v6z2p3nmyqwy8bmbj036693rzmxrc317g0a45gsqxggp3n4"; depends=[DBI RSQLite gdistance geosphere sp raster ncdf plotrix shape reshape2 adehabitatMA ggplot2]; }; +marmap = derive { name="marmap"; version="0.9.2"; sha256="1csi6v6z2p3nmyqwy8bmbj036693rzmxrc317g0a45gsqxggp3n4"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; -matR = derive { name="matR"; version="0.9"; sha256="0lih3g2z6rxykprl3s529xcf466bpzpsv4l20dkgx1fgfslfcl2p"; depends=[MGRASTer BIOM_utils]; }; -matchingMarkets = derive { name="matchingMarkets"; version="0.1-3"; sha256="1q76sw77r90m8wrzj2d81w0fnkqfg8fz5sgpc7m64c5if82z3awa"; depends=[Rcpp lpSolve partitions Rcpp RcppArmadillo RcppProgress]; }; +matR = derive { name="matR"; version="0.9"; sha256="0lih3g2z6rxykprl3s529xcf466bpzpsv4l20dkgx1fgfslfcl2p"; depends=[BIOM_utils MGRASTer]; }; +matchingMarkets = derive { name="matchingMarkets"; version="0.1-4"; sha256="096yknmzla2qq2vkaxna5f8mclayjn5baff3cm8ik95zy7j3lrjp"; depends=[lpSolve partitions Rcpp RcppArmadillo RcppProgress]; }; +matchingR = derive { name="matchingR"; version="1.0.1"; sha256="0qqk2zcyj0m3r9q0lclb39gdrjqqjlaxvk3cxpfah7hxhhkrk4mc"; depends=[Rcpp RcppArmadillo]; }; mathgraph = derive { name="mathgraph"; version="0.9-11"; sha256="0xikgzn24p0qqlrmaydmjk5yz5pq2rilsvpx86n3p2k2fc3wpwjy"; depends=[]; }; -matie = derive { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[dfoptim mvtnorm seriation igraph gplots cba]; }; +matie = derive { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; matpow = derive { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; }; matrixStats = derive { name="matrixStats"; version="0.14.0"; sha256="1glm3h6d4c6bl3svnfk6fyj59linfc7s6fyrs0nlcwizs4371nis"; depends=[]; }; matrixcalc = derive { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; }; -matrixpls = derive { name="matrixpls"; version="0.5.0"; sha256="0r1qpfbvaq24d30ck5c5zwsss4rqhl12g3hhmij3cn55hmv26azq"; depends=[assertive matrixcalc lavaan psych MASS]; }; +matrixpls = derive { name="matrixpls"; version="0.5.0"; sha256="0r1qpfbvaq24d30ck5c5zwsss4rqhl12g3hhmij3cn55hmv26azq"; depends=[assertive lavaan MASS matrixcalc psych]; }; maxLik = derive { name="maxLik"; version="1.2-4"; sha256="1b2qr16s2w76nxqdlq3hflpg0sjnn8mlzas7082y8xpxw3cknpdz"; depends=[miscTools sandwich]; }; -maxent = derive { name="maxent"; version="1.3.3.1"; sha256="1skc7d0p6kg0gi1bpgaqn2dmxjzbvcphx5x3idpscxfbplm5v96p"; depends=[SparseM tm Rcpp Rcpp]; }; +maxent = derive { name="maxent"; version="1.3.3.1"; sha256="1skc7d0p6kg0gi1bpgaqn2dmxjzbvcphx5x3idpscxfbplm5v96p"; depends=[Rcpp SparseM tm]; }; maxlike = derive { name="maxlike"; version="0.1-5"; sha256="0h544wr7qsyb70vmbk648hfyb6arrsb41gw39svcin412rhw9k9j"; depends=[raster]; }; maxstat = derive { name="maxstat"; version="0.7-22"; sha256="0fgpc5y3c5cidy7hxil10hxzdjxfmag2pp2ksh02z9smb8m0sdqb"; depends=[exactRankTests mvtnorm]; }; -mbbefd = derive { name="mbbefd"; version="0.7"; sha256="0l8dq1j1ky83jl1cka0mrjcf7rcby36jkp0zn7wmpnxjrmdrixgb"; depends=[actuar gsl Rcpp Rcpp]; }; +mbbefd = derive { name="mbbefd"; version="0.7"; sha256="0l8dq1j1ky83jl1cka0mrjcf7rcby36jkp0zn7wmpnxjrmdrixgb"; depends=[actuar gsl Rcpp]; }; mbest = derive { name="mbest"; version="0.3"; sha256="0j6v6c1s11gvzwcnj5dnd9anj11hpmy7c83c8ribb7lx75mwj4k4"; depends=[lme4]; }; mblm = derive { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; }; mbmdr = derive { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; }; -mboost = derive { name="mboost"; version="2.4-2"; sha256="104qs8hbsm4ps5ybzxrdz6lz0lqn925xy4k3m4rmbk4r62wj9v61"; depends=[stabs Matrix survival lattice nnls quadprog]; }; +mboost = derive { name="mboost"; version="2.4-2"; sha256="104qs8hbsm4ps5ybzxrdz6lz0lqn925xy4k3m4rmbk4r62wj9v61"; depends=[lattice Matrix nnls quadprog stabs survival]; }; mc2d = derive { name="mc2d"; version="0.1-15"; sha256="1kp2l1gvw3caplq9916s1dmpmfp6fb2xscys9gj6dykl6gi4h4hb"; depends=[mvtnorm]; }; mcGlobaloptim = derive { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; -mcIRT = derive { name="mcIRT"; version="0.41"; sha256="0pbwydl4zjzwdlpzwpqm4xhq716zgq9s7bvcbrqp6q0jkba9zjnw"; depends=[Rcpp Rcpp RcppArmadillo]; }; +mcIRT = derive { name="mcIRT"; version="0.41"; sha256="0pbwydl4zjzwdlpzwpqm4xhq716zgq9s7bvcbrqp6q0jkba9zjnw"; depends=[Rcpp RcppArmadillo]; }; mcbiopi = derive { name="mcbiopi"; version="1.1.2"; sha256="12h4bv3hx1m6bsqdxj5n3b5gh98ms508am8pigz7ckmv0xkyhx85"; depends=[]; }; mcc = derive { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; }; mcclust = derive { name="mcclust"; version="1.0"; sha256="00qprmsjwbn2d0jl7p9mz8pv7k8ld3mzk862pr1grigk0lqwhx06"; depends=[lpSolve]; }; mcga = derive { name="mcga"; version="2.0.9"; sha256="197yldx03c634f3x0mpxxvqrys93n7z7n3x0alvqa42z3vdkrz7b"; depends=[]; }; mcgibbsit = derive { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh46966v01dh26fy79dfklk3zjf262zp3c62ld9yf"; depends=[coda]; }; mcheatmaps = derive { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; }; -mcll = derive { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[statmod locfit]; }; +mcll = derive { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; mclogit = derive { name="mclogit"; version="0.3-1"; sha256="0zyms6v9qjh6a5ccahfanarp4sg49yingb8wpjcz61skqvm8j7qx"; depends=[Matrix]; }; mclust = derive { name="mclust"; version="5.0.1"; sha256="10h8y4a0v1vq01v8i92yr3dcxfq74xsm44nh0ldh1a4d6j270zyp"; depends=[]; }; mcmc = derive { name="mcmc"; version="0.9-3"; sha256="148l28nb1qv82x2hj46c26yhn0lw8x5jsrp2dav9sbysv1bdj2f8"; depends=[]; }; -mcmcplots = derive { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda sfsmisc colorspace denstrip]; }; +mcmcplots = derive { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda colorspace denstrip sfsmisc]; }; mcmcse = derive { name="mcmcse"; version="1.0-1"; sha256="1jn5hl6aw83qmwccyfmcsvcymx9cp4d3qnfzzqvlw22x26rx88r6"; depends=[]; }; mco = derive { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2brgxay69kcwm7y7s3gziq74fn4rw"; depends=[]; }; -mcprofile = derive { name="mcprofile"; version="0.2-1"; sha256="0q1d236mcmgp5p5gl474myp1zz8cbxffd0kvsd8338jijalj05p0"; depends=[ggplot2 quadprog mvtnorm]; }; +mcprofile = derive { name="mcprofile"; version="0.2-1"; sha256="0q1d236mcmgp5p5gl474myp1zz8cbxffd0kvsd8338jijalj05p0"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive { name="mcr"; version="1.2.1"; sha256="0237w41xichd418ax9xviq4wxbcc6c0cgr5gvzkca67nnqgc4jaz"; depends=[]; }; -mcsm = derive { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[MASS coda]; }; -mda = derive { name="mda"; version="0.4-6"; sha256="0v6avsq1j3vd8pmnilxcbx6v42kb5gvsy03q2srwzf3z04807n8i"; depends=[class]; }; +mcsm = derive { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; }; +mda = derive { name="mda"; version="0.4-7"; sha256="1hjmjrdr6zfccsd4xln1jvkkvk25igppvnl6mqznfc7qsmk459cy"; depends=[class]; }; mdatools = derive { name="mdatools"; version="0.6.0"; sha256="13pfzr3lvqifln9lzdd0dpnygdibxp9ka7zwfisxjrw21m8mhmm3"; depends=[]; }; mded = derive { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; mdscore = derive { name="mdscore"; version="0.1-2"; sha256="1g473rwffkb2x6y6wcm98i6xr5dhz11ypnbrvhb2klbvi81jj511"; depends=[MASS]; }; mdsdt = derive { name="mdsdt"; version="1.0"; sha256="0ngf2p6lm32124qyfh18zlgf0dipj3njn6d0m8f192563kp50q0p"; depends=[ellipse mnormt polycor]; }; measuRing = derive { name="measuRing"; version="0.3"; sha256="16lgvk9lm0vjy50das0qq0h0z683hh94spjcdmkljmxxzwmzfl4b"; depends=[pastecs png tiff]; }; -meboot = derive { name="meboot"; version="1.4-5"; sha256="1h33f3dpx906q5nmd57hhkq07mbs2kg8mv6mi4imaa2zpr5vc4py"; depends=[dynlm nlme]; }; +meboot = derive { name="meboot"; version="1.4-6"; sha256="17wjvc375vnya1lhkj10nsn68k1j3zy036031qca3wxx6wqw9kzx"; depends=[dynlm nlme]; }; medSTC = derive { name="medSTC"; version="1.0.0"; sha256="1f7w6jbxairqvghr5b7vgdllg3ian16a1fgi7vqlq0mhy2j6phan"; depends=[]; }; mederrRank = derive { name="mederrRank"; version="0.0.7"; sha256="08jbqmb418qb7v2x6lm4wig1pfzzfx6fhb49mbfhlkbmssbqsjfq"; depends=[BB numDeriv]; }; -medflex = derive { name="medflex"; version="0.5-0"; sha256="06zp0la99ly2vpm97l3qm289inyd0bxgkjd4cv15mvc47w9c9x9x"; depends=[multcomp boot Matrix sandwich]; }; -mediation = derive { name="mediation"; version="4.4.4"; sha256="00w4c51v0xvc8pfpxqn73l8r2j12sv1wf5kj3yjq8g08dgzynham"; depends=[MASS Matrix mvtnorm sandwich lpSolve Hmisc]; }; -medicalrisk = derive { name="medicalrisk"; version="1.1"; sha256="1fb8zp426zcqsnb35sgywnz44lpssa1acfa2aha9bnvyazif3s90"; depends=[plyr reshape2 hash]; }; +medflex = derive { name="medflex"; version="0.5-0"; sha256="06zp0la99ly2vpm97l3qm289inyd0bxgkjd4cv15mvc47w9c9x9x"; depends=[boot Matrix multcomp sandwich]; }; +mediation = derive { name="mediation"; version="4.4.4"; sha256="00w4c51v0xvc8pfpxqn73l8r2j12sv1wf5kj3yjq8g08dgzynham"; depends=[Hmisc lpSolve MASS Matrix mvtnorm sandwich]; }; +medicalrisk = derive { name="medicalrisk"; version="1.1"; sha256="1fb8zp426zcqsnb35sgywnz44lpssa1acfa2aha9bnvyazif3s90"; depends=[hash plyr reshape2]; }; mefa = derive { name="mefa"; version="3.2-5"; sha256="037vpnwclyj6xgycznh6g6qlirlgy3sjnkjqb1046q80b5ywv2ni"; depends=[]; }; mefa4 = derive { name="mefa4"; version="0.3-1"; sha256="0zyjhq80krnb11wh8p8006qz0znrps3qsd2qnhkw7zwl5282i1zp"; depends=[Matrix]; }; -megaptera = derive { name="megaptera"; version="1.0-0"; sha256="1fczhdydqca1jcdc315kwrhxcjisxfq23l4sm7m2011k5nrjmv37"; depends=[snowfall ips ape seqinr RPostgreSQL XML]; }; -meifly = derive { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[plyr leaps MASS]; }; -mem = derive { name="mem"; version="1.4"; sha256="1d3fgllh7fhlfz3rz2jm31r8vn7msz4na4762iaw161qp2j101db"; depends=[sm boot]; }; -memgene = derive { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 raster gdistance vegan]; }; +megaptera = derive { name="megaptera"; version="1.0-0"; sha256="1fczhdydqca1jcdc315kwrhxcjisxfq23l4sm7m2011k5nrjmv37"; depends=[ape ips RPostgreSQL seqinr snowfall XML]; }; +meifly = derive { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; +mem = derive { name="mem"; version="1.4"; sha256="1d3fgllh7fhlfz3rz2jm31r8vn7msz4na4762iaw161qp2j101db"; depends=[boot sm]; }; +memgene = derive { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; }; memisc = derive { name="memisc"; version="0.97"; sha256="069siqkw7ll9n1crsl3yjhybwz0w52576q504cylpvlxx3jm9hfs"; depends=[lattice MASS]; }; memoise = derive { name="memoise"; version="0.2.1"; sha256="19wm4b3kq6xva43kga3xydnl7ybl5mq7b4y2fczgzzjz63jd75y4"; depends=[digest]; }; memuse = derive { name="memuse"; version="1.1"; sha256="1i6l3d885b4v01hlkl50m401bwi7akydhh52gf4kya5khanb8n2b"; depends=[]; }; @@ -4453,113 +4548,120 @@ merror = derive { name="merror"; version="2.0.1"; sha256="09v62f7ycywasid3b7x52d metRology = derive { name="metRology"; version="0.9-17"; sha256="1g4gv3mpii71i6imfwqg9d5iwfx03bq4lizzhx7dy39b2mj7jd4q"; depends=[MASS numDeriv]; }; meta = derive { name="meta"; version="4.2-0"; sha256="1cbrgy3ry70l52da02vx2qflxhnqw7kmy6r10d9wzhmc1gf85snp"; depends=[]; }; metaLik = derive { name="metaLik"; version="0.41.0"; sha256="08wiriq6cm02d0b0q34056y5249daidpjzkwzgjq6dh55v5fp2s4"; depends=[]; }; -metaMA = derive { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[SMVar]; }; -metaMix = derive { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table Matrix gtools Rmpi ggplot2]; }; +metaMA = derive { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; +metaMix = derive { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table ggplot2 gtools Matrix Rmpi]; }; metaRNASeq = derive { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; }; -metabolomics = derive { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots]; }; -metacom = derive { name="metacom"; version="1.4.3"; sha256="0djq2ry2vriayn839f0pgkq4j8j1zyd8ribmzn6ngfhz305fszlq"; depends=[devtools vegan lattice]; }; -metacor = derive { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[rmeta gsl]; }; -metafolio = derive { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[Rcpp plyr colorspace MASS Rcpp RcppArmadillo]; }; -metafor = derive { name="metafor"; version="1.9-6"; sha256="1bjhzkim64035xk04kc1ra4ih6gxfsn389gag21mf9zhk0mi6yd0"; depends=[Matrix]; }; -metagen = derive { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[MASS lhs plyr BBmisc ParamHelpers BatchJobs BatchExperiments ggplot2 metafor]; }; -metamisc = derive { name="metamisc"; version="0.1.1"; sha256="1cvlsix3b857xdw6anqhqsrfwxpnf4rbzg4ybf6aw7vcdc05zgwd"; depends=[mvtnorm ellipse bbmle rjags coda]; }; +metaSEM = derive { name="metaSEM"; version="0.9.4"; sha256="1d790z462g9qnrxl5p3a50abaachc2wih10zsk6jpbf10z694g13"; depends=[MASS Matrix OpenMx]; }; +metabolomics = derive { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; +metacom = derive { name="metacom"; version="1.4.3"; sha256="0djq2ry2vriayn839f0pgkq4j8j1zyd8ribmzn6ngfhz305fszlq"; depends=[devtools lattice vegan]; }; +metacor = derive { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; +metafolio = derive { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; +metafor = derive { name="metafor"; version="1.9-7"; sha256="1gnq9qrz3ym9az9s6pi48dx7j3znrp9knbdmh4qpdhjkdlpa55d1"; depends=[Matrix]; }; +metagear = derive { name="metagear"; version="0.1"; sha256="1c00y7p7063f3c1ar17r9ij5j4chzyispg0wprkjaaz0mx9w1hb0"; depends=[EBImage gWidgets gWidgetsRGtk2 MASS Matrix metafor stringr]; }; +metagen = derive { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; }; +metamisc = derive { name="metamisc"; version="0.1.1"; sha256="1cvlsix3b857xdw6anqhqsrfwxpnf4rbzg4ybf6aw7vcdc05zgwd"; depends=[bbmle coda ellipse mvtnorm rjags]; }; metap = derive { name="metap"; version="0.6"; sha256="1iy5cmwrlsr70z0qnqn30n15knsfclg383815a2a8yqpg5gs4953"; depends=[]; }; -metaplus = derive { name="metaplus"; version="0.7-1"; sha256="17wn2x8dnfzm98bd007axq9ak38hphx08vqpk6ba0jahlfvqqdiz"; depends=[bbmle metafor boot numDeriv lme4 MASS]; }; +metaplus = derive { name="metaplus"; version="0.7-2"; sha256="1d9528z78vmkmv67s29g87kfdwydfwx4cnbcdmd0kq8rch9zjk07"; depends=[bbmle boot lme4 MASS metafor numDeriv]; }; metasens = derive { name="metasens"; version="0.2-0"; sha256="13mncikxzg8cnpbw78ird1xkrjlivmjibhrk700vdx1hygzwi6x0"; depends=[meta]; }; metatest = derive { name="metatest"; version="1.0-4"; sha256="0bz6gg2n4ffkr144jxk27y24xpqhp8awr09wkaijmv8902qx6qah"; depends=[]; }; -meteoForecast = derive { name="meteoForecast"; version="0.43"; sha256="1fpbxkdkgi50xbx3n26apdm6i29a2302vabfz0z3czafd76wkwg7"; depends=[raster sp zoo ncdf rjson]; }; +meteoForecast = derive { name="meteoForecast"; version="0.45"; sha256="0p74w5zcibzw2vpbyl4jb2wzpz0pki1n1l66hjs6dnkrn52zph95"; depends=[ncdf raster sp zoo]; }; meteogRam = derive { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; -mets = derive { name="mets"; version="1.1.0"; sha256="0nfyfmhcd4sy2j1nymgw4yz0b5a36s2dqx42kzwbzgvp1m11z225"; depends=[timereg lava numDeriv Rcpp survival Rcpp RcppArmadillo]; }; +metricsgraphics = derive { name="metricsgraphics"; version="0.8.5"; sha256="05rjx19qzf2r2hxf8y490xd29n3qy40rp38s2ni989m1p0bzc6c9"; depends=[htmltools htmlwidgets magrittr]; }; +mets = derive { name="mets"; version="1.1.1"; sha256="1myqcds9glsy3fwzr7v711xzk7gmvy2cb4x3qgj1kxa90d1d50hz"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; mewAvg = derive { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; mfp = derive { name="mfp"; version="1.5.1"; sha256="0flqrvicgks7nxxijhndshpf541drlgqjidm3nql1bg5hnpc5fcq"; depends=[survival]; }; -mfx = derive { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[sandwich lmtest MASS betareg]; }; -mgcv = derive { name="mgcv"; version="1.8-6"; sha256="0605cqrbk26zg8s8qdd8kqwq56wihx7r6hfzr4x0xzk4y1g0m2rq"; depends=[nlme Matrix]; }; -mgpd = derive { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[evd numDeriv corpcor fields]; }; +mfx = derive { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; }; +mgcv = derive { name="mgcv"; version="1.8-6"; sha256="0605cqrbk26zg8s8qdd8kqwq56wihx7r6hfzr4x0xzk4y1g0m2rq"; depends=[Matrix nlme]; }; +mglmn = derive { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; +mgpd = derive { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; mgraph = derive { name="mgraph"; version="1.03"; sha256="0av2c0jvqsdfb3i0s0498wcms0n2mm0z3nnl98mx2fy7wz34z8b2"; depends=[rgdal]; }; mhsmm = derive { name="mhsmm"; version="0.4.14"; sha256="1zrqnzbmlk3kmwbq9rl4bdkc9iawkgn3qr7nzsa782v55i7w2wiz"; depends=[mvtnorm]; }; mht = derive { name="mht"; version="3.1.2"; sha256="01zcaf9k0qayzm8dn5dvnm5n3qgqpj8r96qhqaa5vbjcr6ci2x2r"; depends=[glmnet Matrix]; }; -mhurdle = derive { name="mhurdle"; version="1.0-1"; sha256="1x631fgbq3ika05svyavzadyjd7vi9bcmsgb58wfhpf9xq6j5rcr"; depends=[Formula truncreg maxLik pbivnorm]; }; -mi = derive { name="mi"; version="1.0"; sha256="1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l"; depends=[Matrix arm]; }; +mhurdle = derive { name="mhurdle"; version="1.0-1"; sha256="1x631fgbq3ika05svyavzadyjd7vi9bcmsgb58wfhpf9xq6j5rcr"; depends=[Formula maxLik pbivnorm truncreg]; }; +mi = derive { name="mi"; version="1.0"; sha256="1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l"; depends=[arm Matrix]; }; miRada = derive { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; }; -miRtest = derive { name="miRtest"; version="1.8"; sha256="0i66s1sz7vf8p8ihfrxmag7wbkw8mlkldcp1w2figlzyhs74c85p"; depends=[corpcor MASS RepeatedHighDim]; }; +miRtest = derive { name="miRtest"; version="1.8"; sha256="0i66s1sz7vf8p8ihfrxmag7wbkw8mlkldcp1w2figlzyhs74c85p"; depends=[corpcor GlobalAncova globaltest limma MASS RepeatedHighDim]; }; micEcon = derive { name="micEcon"; version="0.6-12"; sha256="1kxhr3qqgswq8glrjfcjz0hyb163lwf303yhwlgrwjciqgp5dq17"; depends=[miscTools]; }; -micEconAids = derive { name="micEconAids"; version="0.6-16"; sha256="07hsabrlkwpdaalh0b7izraz2q5dlxn373ccijc5c4zsrkgk7kij"; depends=[lmtest micEcon systemfit miscTools]; }; -micEconCES = derive { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[minpack_lm DEoptim systemfit car micEcon miscTools]; }; -micEconSNQP = derive { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[miscTools systemfit MASS]; }; -mice = derive { name="mice"; version="2.22"; sha256="1b7ivpa21ipzbmmwjn1ch968zpw6wydg30f7jdk95m40lrk2xs68"; depends=[Rcpp lattice MASS nnet randomForest rpart Rcpp]; }; -miceadds = derive { name="miceadds"; version="1.1-1"; sha256="1hzx9gf73kgpaa1l0889ybc8qsi703sc4z8wd8jfayhi57rigikb"; depends=[MASS mice mvtnorm pan Rcpp sirt TAM lme4 MBESS pls mitools bayesm inline car foreign Rcpp RcppArmadillo]; }; +micEconAids = derive { name="micEconAids"; version="0.6-16"; sha256="07hsabrlkwpdaalh0b7izraz2q5dlxn373ccijc5c4zsrkgk7kij"; depends=[lmtest micEcon miscTools systemfit]; }; +micEconCES = derive { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[car DEoptim micEcon minpack_lm miscTools systemfit]; }; +micEconSNQP = derive { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[MASS miscTools systemfit]; }; +mice = derive { name="mice"; version="2.22"; sha256="1b7ivpa21ipzbmmwjn1ch968zpw6wydg30f7jdk95m40lrk2xs68"; depends=[lattice MASS nnet randomForest Rcpp rpart]; }; +miceadds = derive { name="miceadds"; version="1.2-0"; sha256="01gbkpmmd81v5yhj3jparp7li1jzq91f5zk65dhcd8g3a0k0952m"; depends=[bayesm car foreign inline lme4 MASS MBESS mice mitools multiwayvcov mvtnorm pan pls Rcpp RcppArmadillo sirt sjmisc TAM]; }; microbenchmark = derive { name="microbenchmark"; version="1.4-2"; sha256="05yxvdnkxr2ll94h6f2m5sn3gg7vrlm9nbdxgmj2g8cp8gfxpfkg"; depends=[ggplot2]; }; -micromap = derive { name="micromap"; version="1.9.2"; sha256="1x4v0ibbpfz471dp46agib27i4svs8wyy93ldriryvhpa2w5948y"; depends=[maptools RColorBrewer rgdal sp ggplot2]; }; +micromap = derive { name="micromap"; version="1.9.2"; sha256="1x4v0ibbpfz471dp46agib27i4svs8wyy93ldriryvhpa2w5948y"; depends=[ggplot2 maptools RColorBrewer rgdal sp]; }; micromapST = derive { name="micromapST"; version="1.0.5"; sha256="1n9mzyl5dj21165j0j99brkqq7c54j3cg6r21ifdzffj2dx29wh0"; depends=[RColorBrewer]; }; micropan = derive { name="micropan"; version="1.0"; sha256="0qnxm6z2pk1wibchj6rhn3hld77dzl5qgvzl4v9n16ywlgdv09ai"; depends=[igraph]; }; -midasr = derive { name="midasr"; version="0.4"; sha256="190qliv7v80rr3jh9yvchwl3ch7nf5b8p90iywp8qkaav5r8rcdy"; depends=[sandwich optimx MASS numDeriv Matrix forecast]; }; +midasr = derive { name="midasr"; version="0.4"; sha256="190qliv7v80rr3jh9yvchwl3ch7nf5b8p90iywp8qkaav5r8rcdy"; depends=[forecast MASS Matrix numDeriv optimx sandwich]; }; migest = derive { name="migest"; version="1.6"; sha256="1mjjcba74nk10kdbsaphih3zdyaqmf02hrv13s34klwdwkp3nv0m"; depends=[]; }; migration_indices = derive { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; -migui = derive { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[gWidgets2 mi arm]; }; +migui = derive { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; mime = derive { name="mime"; version="0.3"; sha256="1i9f9z88cahvb5whdgmp0ipk0b9glk0xn8ik519vzpydnn1slvxk"; depends=[]; }; -minPtest = derive { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[scrime Epi]; }; +minPtest = derive { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[Epi scrime]; }; minerva = derive { name="minerva"; version="1.4.1"; sha256="0dg5xnl9srdvid49na8478bnvagv0khiv6hl7z8gw6m745681i89"; depends=[]; }; -miniCRAN = derive { name="miniCRAN"; version="0.2.4"; sha256="1p8kypq0r4sckvdq7qfznfjp3mpjy3cvm9dnwpdfn4dnl4n377z0"; depends=[XML httr]; }; +miniCRAN = derive { name="miniCRAN"; version="0.2.4"; sha256="1p8kypq0r4sckvdq7qfznfjp3mpjy3cvm9dnwpdfn4dnl4n377z0"; depends=[httr XML]; }; miniGUI = derive { name="miniGUI"; version="0.8.0"; sha256="1iq52x7wbcin7ya207jj3k9vym7mavm5z61vggyabdmr768pci39"; depends=[]; }; minimax = derive { name="minimax"; version="1.0"; sha256="1g0d9q5h1avbb0yg7ajw5330820i3n5cgkpsif754l4j3ikya8p3"; depends=[]; }; minimist = derive { name="minimist"; version="0.1"; sha256="007y829d766b1v6wkrhk7pkg99r38bvmhc8bwvs8rs13dr7444ln"; depends=[V8]; }; minpack_lm = derive { name="minpack.lm"; version="1.1-8"; sha256="0nvsxqwg3k9k3dqjzkz1vq2z0xla317011zm9ms8y1qvf75raz83"; depends=[]; }; -minqa = derive { name="minqa"; version="1.2.4"; sha256="036drja6xz7awja9iwb76x91415p26fb0jmg7y7v0p65m6j978fg"; depends=[Rcpp Rcpp]; }; +minqa = derive { name="minqa"; version="1.2.4"; sha256="036drja6xz7awja9iwb76x91415p26fb0jmg7y7v0p65m6j978fg"; depends=[Rcpp]; }; minque = derive { name="minque"; version="1.1"; sha256="1hx4j38213hs8lssf9kj5s423imk7dzv60mdbzrpbp7la7jk2n57"; depends=[klaR Matrix]; }; minxent = derive { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; -mipfp = derive { name="mipfp"; version="2.0"; sha256="1sh33lgvq31nk8vkl9p195v4z3whv2c1fc7bnhc8wxgglm6vc126"; depends=[cmm Rsolnp numDeriv]; }; -mirt = derive { name="mirt"; version="1.9"; sha256="0bav1ykmbw8d64l61iwd4ma2xz4y3z2wqx8ba63583rmbsynkkvk"; depends=[lattice GPArotation Rcpp sfsmisc numDeriv Rcpp]; }; -mirtCAT = derive { name="mirtCAT"; version="0.5"; sha256="0lv4dxpby3izmh3avl70i0iiaj8rz1fpb666cwga5590ks7rq4lr"; depends=[mirt shiny lattice Rcpp markdown Rcpp RcppArmadillo]; }; +mipfp = derive { name="mipfp"; version="2.0"; sha256="1sh33lgvq31nk8vkl9p195v4z3whv2c1fc7bnhc8wxgglm6vc126"; depends=[cmm numDeriv Rsolnp]; }; +mirt = derive { name="mirt"; version="1.10"; sha256="0bylba0z8g9kx3idfpzf3qbw7pgjvpd8d1vx930nr02vhv3c3cms"; depends=[GPArotation lattice mgcv numDeriv Rcpp sfsmisc]; }; +mirtCAT = derive { name="mirtCAT"; version="0.5"; sha256="0lv4dxpby3izmh3avl70i0iiaj8rz1fpb666cwga5590ks7rq4lr"; depends=[lattice markdown mirt Rcpp RcppArmadillo shiny]; }; misc3d = derive { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; -miscF = derive { name="miscF"; version="0.1-2"; sha256="195rb9acdirfhap0z35yvcci5xn4j84mlbafki4l1vfgqgnh0ajj"; depends=[MCMCpack mvtnorm Rcpp RcppArmadillo Rcpp RcppArmadillo]; }; -miscFuncs = derive { name="miscFuncs"; version="1.2-7"; sha256="1cnhd23fi6akr3fsr2b85s5cn36ksy4h3c4iyyjqcpc49wa819d0"; depends=[roxygen2 mvtnorm]; }; +miscF = derive { name="miscF"; version="0.1-2"; sha256="195rb9acdirfhap0z35yvcci5xn4j84mlbafki4l1vfgqgnh0ajj"; depends=[MCMCpack mvtnorm Rcpp RcppArmadillo]; }; +miscFuncs = derive { name="miscFuncs"; version="1.2-7"; sha256="1cnhd23fi6akr3fsr2b85s5cn36ksy4h3c4iyyjqcpc49wa819d0"; depends=[mvtnorm roxygen2]; }; miscTools = derive { name="miscTools"; version="0.6-16"; sha256="19mslb64lm8srrmml1v40rfkxhqw02bplw0yjv7qnkqj44hcqfw1"; depends=[]; }; -miscset = derive { name="miscset"; version="0.4"; sha256="04cl8a2chcynfn5rljqw2ll4ry0wqaslqgjh9ny8ax3hcvyvmmwl"; depends=[data_table gridExtra Rcpp xtable Rcpp]; }; -missForest = derive { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[randomForest foreach itertools]; }; +miscset = derive { name="miscset"; version="0.4"; sha256="04cl8a2chcynfn5rljqw2ll4ry0wqaslqgjh9ny8ax3hcvyvmmwl"; depends=[data_table gridExtra Rcpp xtable]; }; +missForest = derive { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; missMDA = derive { name="missMDA"; version="1.7.3"; sha256="1wg4rgziw2f8asdxi2a5dx1mn4z0sd1lf9a8fp7dg29bnv82brmh"; depends=[FactoMineR]; }; -mistat = derive { name="mistat"; version="1.0-2"; sha256="1n5wdn5pl6mflzxpdwjj0x44c8a3cxxpwhmyw1jkx5r8yk95mh3p"; depends=[]; }; +mistat = derive { name="mistat"; version="1.0-3"; sha256="12fykqkcqfxn8m8wwpw69f7h2f24c5yhg4fw50jsifhcj40kk29q"; depends=[]; }; mistral = derive { name="mistral"; version="1.1-1"; sha256="19zkc5ddjzw17y70x3l6maljsfvg0295xyzx7kavmjrws74jx4rc"; depends=[DiceKriging e1071 kernlab Matrix mvtnorm rgenoud]; }; +mitml = derive { name="mitml"; version="0.2-2"; sha256="11pgwa1cxf1i2qkm8gyzxsjkhg40r75gk2k1lwaqpqgi7vs3drbs"; depends=[haven pan]; }; mitools = derive { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive { name="mix"; version="1.0-8"; sha256="0wlp6wkn8dwwnjfq3qzk0hjb3xsjh5ld5zxbd6nf12awpkwa1j9y"; depends=[]; }; -mixAK = derive { name="mixAK"; version="3.10"; sha256="1mma3515p1r5nhbmdyxzvv73ni5iw4arnzq94nw9gib1dgjpm7c5"; depends=[colorspace lme4 fastGHQuad mnormt coda]; }; -mixOmics = derive { name="mixOmics"; version="5.0-4"; sha256="020cy0x7qf6x7lb1aqfr6qflf08k2phnygcjr7lq4z8q9v502qyh"; depends=[MASS lattice RGCCA igraph rgl pheatmap]; }; -mixPHM = derive { name="mixPHM"; version="0.7-1"; sha256="0v75xv06m40jqq0c4y1gvdrmyddxs814djbpyq61fv8cn22fn7wx"; depends=[survival lattice]; }; +mixAK = derive { name="mixAK"; version="4.0-5"; sha256="1kdcia6j2dw4q1rbrswx9h8ivzrnw8hrg5a206jykmsdbngbifx5"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; +mixOmics = derive { name="mixOmics"; version="5.0-4"; sha256="020cy0x7qf6x7lb1aqfr6qflf08k2phnygcjr7lq4z8q9v502qyh"; depends=[igraph lattice MASS pheatmap RGCCA rgl]; }; +mixPHM = derive { name="mixPHM"; version="0.7-1"; sha256="0v75xv06m40jqq0c4y1gvdrmyddxs814djbpyq61fv8cn22fn7wx"; depends=[lattice survival]; }; mixRasch = derive { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; }; mixcat = derive { name="mixcat"; version="1.0-3"; sha256="0xszngygd3yj61pvv6jrrb5j0sxgpxzhlic69xrd5mv5iyw0cmxd"; depends=[statmod]; }; mixdist = derive { name="mixdist"; version="0.5-4"; sha256="100i9mb930mzvdha31m1srylmpa64wxyjv6pkw1g5lhm1hsclwm3"; depends=[]; }; -mixedMem = derive { name="mixedMem"; version="1.0.2"; sha256="1nlnlww2xbmlifcp9l293041csnh38hvr686sczyqpb7c5jf39g3"; depends=[Rcpp gtools Rcpp RcppArmadillo BH]; }; +mixedMem = derive { name="mixedMem"; version="1.0.2"; sha256="1nlnlww2xbmlifcp9l293041csnh38hvr686sczyqpb7c5jf39g3"; depends=[BH gtools Rcpp RcppArmadillo]; }; mixer = derive { name="mixer"; version="1.8"; sha256="1r831jha7qrxibw5m3nc3l6r887ihzxzsj65yjnbl5cf5b8y19bb"; depends=[]; }; -mixexp = derive { name="mixexp"; version="1.2.1"; sha256="0yjsngr2akj2hhl1hav2kkp8w0g4775qvnbzypa3c1fmx8kf1xvw"; depends=[gdata lattice daewr]; }; -mixlm = derive { name="mixlm"; version="1.0.8.5"; sha256="1xbkh6aaw4j57vkn6ng7i5wkpz2clhvj3sx0mhfmpwhg13rpdkaj"; depends=[multcomp pls pracma leaps lme4 car]; }; +mixexp = derive { name="mixexp"; version="1.2.1"; sha256="0yjsngr2akj2hhl1hav2kkp8w0g4775qvnbzypa3c1fmx8kf1xvw"; depends=[daewr gdata lattice]; }; +mixlm = derive { name="mixlm"; version="1.0.8.5"; sha256="1xbkh6aaw4j57vkn6ng7i5wkpz2clhvj3sx0mhfmpwhg13rpdkaj"; depends=[car leaps lme4 multcomp pls pracma]; }; mixlow = derive { name="mixlow"; version="1.0.1"; sha256="12vnp3gl3ykxzgvc4bwhi4flmc1sl2y77yi0zi4by17q93a49akm"; depends=[nlme]; }; mixor = derive { name="mixor"; version="1.0.2"; sha256="1xkwgk4dvjbpqvvbrb8yb88iz4nkv7sykxaygjq7zfcdrdivxz6n"; depends=[]; }; mixreg = derive { name="mixreg"; version="0.0-5"; sha256="0wsb1z98ymhshw9nhsvlszsanflxv3alwpdsw8lr3v62bkwka8zr"; depends=[]; }; -mixsep = derive { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[tcltk2 MASS RODBC]; }; +mixsep = derive { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; }; mixsmsn = derive { name="mixsmsn"; version="1.0-9"; sha256="0pgip1xfgfrdy3g3197d7visn164zi7xnp6wlsgjwxdylvjsxkji"; depends=[mvtnorm]; }; mixtNB = derive { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; }; mixtools = derive { name="mixtools"; version="1.0.3"; sha256="01ix019cvplqz09q55pz9w7cc281k37khh1i3xf1k6l9f2cj519z"; depends=[boot MASS segmented]; }; +mixtox = derive { name="mixtox"; version="1.0"; sha256="059vjrz9isyrdqk2ij4b11dawza2yslh67bj7gi9v5awzcf4n2v7"; depends=[]; }; mixture = derive { name="mixture"; version="1.4"; sha256="0k9pzcgfjyp0rmcma26kr2n8rcwmijznmdpvqidgl3jay20c87ca"; depends=[]; }; -mizer = derive { name="mizer"; version="0.2"; sha256="0cpal9lrjbvc923h499hbv4pqw3yjd4jvvhgayxgkak2lz2jzmcz"; depends=[plyr reshape2 ggplot2]; }; -mkde = derive { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[Rcpp raster sp Rcpp]; }; -mkin = derive { name="mkin"; version="0.9-34"; sha256="0g0r30hs5ja2x1mwj336x8y3p0b33asfql076w2krmw38xkpla44"; depends=[minpack_lm rootSolve FME deSolve]; }; +mizer = derive { name="mizer"; version="0.2"; sha256="0cpal9lrjbvc923h499hbv4pqw3yjd4jvvhgayxgkak2lz2jzmcz"; depends=[ggplot2 plyr reshape2]; }; +mkde = derive { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; +mkin = derive { name="mkin"; version="0.9-35"; sha256="0ac71wkl8b034l1bbv8qr5ynvpl8l9j31ych5v5pf6mmqs62bwnr"; depends=[deSolve FME minpack_lm rootSolve]; }; mkssd = derive { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; -mlDNA = derive { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[snowfall igraph rsgcc e1071 randomForest pROC ROCR]; }; +mlDNA = derive { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; }; mlPhaser = derive { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; +mlVAR = derive { name="mlVAR"; version="0.1.0"; sha256="0xychak3xdqnsl9z1ifi0niqsrdc10f6frl6zg162mzpil33wp3g"; depends=[arm lme4 plyr qgraph]; }; mlbench = derive { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; -mldr = derive { name="mldr"; version="0.1.70"; sha256="08yiglqzlqxlfrxd7l12x59h7a38skrkkf8w7jh620ab7a7w1gyg"; depends=[shiny XML circlize]; }; -mlearning = derive { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class nnet MASS e1071 randomForest ipred]; }; +mldr = derive { name="mldr"; version="0.1.70"; sha256="08yiglqzlqxlfrxd7l12x59h7a38skrkkf8w7jh620ab7a7w1gyg"; depends=[circlize shiny XML]; }; +mlearning = derive { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; }; mlegp = derive { name="mlegp"; version="3.1.4"; sha256="1932544irhzhf6a8rjyh66j57h9awlhwd6xam603bamfg106cmg2"; depends=[]; }; -mleur = derive { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[urca stabledist fGarch lattice]; }; +mleur = derive { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlgt = derive { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; }; mlica2 = derive { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; mlmRev = derive { name="mlmRev"; version="1.0-6"; sha256="0mvmahnbbp478xwldj4wlsjib4v4afhs07643gxgcqpi56zbd5h7"; depends=[lme4]; }; mlmmm = derive { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; -mlogit = derive { name="mlogit"; version="0.2-4"; sha256="15ndly7i56k8blgvpn15ixxnqx9yvbci7n3mb3hm9mnrxwh5v7sx"; depends=[Formula maxLik statmod zoo MASS lmtest]; }; -mlogitBMA = derive { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[BMA abind maxLik]; }; -mlr = derive { name="mlr"; version="2.3"; sha256="0cvg2bxxw3c69lj5wy4ds54wn5h299c5mjcsbax1p0k408z5aa6z"; depends=[ParamHelpers BBmisc ggplot2 checkmate parallelMap plyr reshape2 survival]; }; -mlxR = derive { name="mlxR"; version="2.1.1"; sha256="13ddm4hhnjx7r058qlvvxn9npqa0vq6y5l1g0zrlhckjp7bpp90a"; depends=[ggplot2 XML Rcpp]; }; +mlogit = derive { name="mlogit"; version="0.2-4"; sha256="15ndly7i56k8blgvpn15ixxnqx9yvbci7n3mb3hm9mnrxwh5v7sx"; depends=[Formula lmtest MASS maxLik statmod zoo]; }; +mlogitBMA = derive { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; +mlr = derive { name="mlr"; version="2.4"; sha256="1yd4g749jhj7d2kmzh6bc6lyk3857kfghds8cnqg2j68ak87w5q0"; depends=[BBmisc checkmate ggplot2 ggvis parallelMap ParamHelpers plyr reshape2 shiny survival]; }; +mlxR = derive { name="mlxR"; version="2.2.0"; sha256="1ca0vfky45gvr2rqbgli79v1mqhi0d8mpd220xxs1p6xlwbyvn0m"; depends=[ggplot2 Rcpp XML]; }; mma = derive { name="mma"; version="2.0-0"; sha256="0fdb2lbg08l47wnrsjf3rarf2n0qsw0qrx9b9aa08ablwpip4k69"; depends=[gbm]; }; -mmand = derive { name="mmand"; version="1.1.0"; sha256="0awi9wxxalz81d6766djbjsk980n65dhz02fcqb69ifc7x80lc33"; depends=[reportr Rcpp Rcpp RcppArmadillo]; }; +mmand = derive { name="mmand"; version="1.1.0"; sha256="0awi9wxxalz81d6766djbjsk980n65dhz02fcqb69ifc7x80lc33"; depends=[Rcpp RcppArmadillo reportr]; }; mmap = derive { name="mmap"; version="0.6-12"; sha256="12ql03wzwj23h8lwd07rln6id44mfrgf9wcxn58y09wn3ky1rm6a"; depends=[]; }; mmcm = derive { name="mmcm"; version="1.2-5"; sha256="193mlvl8fp5y2150m0xw5bhr7nkr4fgmwjbv1dg314a7ara42v4y"; depends=[mvtnorm]; }; mmds = derive { name="mmds"; version="1.1"; sha256="0f5qzkfhi7vg8vsd8r41idmbwrrgc7qzfnp81adms2yzrza17wrw"; depends=[]; }; @@ -4570,95 +4672,98 @@ mmm = derive { name="mmm"; version="1.4"; sha256="1nydian004nldqhyw3x15w6qfml2gk mmm2 = derive { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; mmod = derive { name="mmod"; version="1.2.1"; sha256="0c2ijg5116hacq0f18xhkbxankjp0k34zfnw8q02ahzwd26ds0z7"; depends=[adegenet pegas]; }; mmpp = derive { name="mmpp"; version="0.1"; sha256="1m2079vz4h3h90ikh268jwh20ink5n1mri8n7aj50xkfspmwsmpg"; depends=[]; }; -mnlogit = derive { name="mnlogit"; version="1.2.0"; sha256="0ymkm3xwm97v5f9lg2ir4czdfb47hibgrkirc2iw66fh24iah84m"; depends=[mlogit lmtest Formula]; }; +mmtfa = derive { name="mmtfa"; version="0.1"; sha256="113bpcb05i78y78byrdn9j45dfcar7q8z7qmlid8cl6b8cjv1vfz"; depends=[matrixStats mvnfast]; }; +mnlogit = derive { name="mnlogit"; version="1.2.2"; sha256="01wvlmkf9ddcmsb8pw08j05r7kfn8zr76zaaa3mv92h967v79grp"; depends=[Formula lmtest mlogit]; }; mnormpow = derive { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; -mnormt = derive { name="mnormt"; version="1.5-2"; sha256="0k3mj7yyh599z93iw8zhfwvj6xjl4g2wzs3hdj1df7vbz1yynp8i"; depends=[]; }; +mnormt = derive { name="mnormt"; version="1.5-3"; sha256="1mw5fk4q5cnj2x2938di58179fr51l396qd61i6y5vwmcccj0kn9"; depends=[]; }; modMax = derive { name="modMax"; version="1.0"; sha256="0p8vnlbw53lqbaq3819jhixq6ns2lwxf56w2md7y98rshf92h474"; depends=[gtools igraph]; }; modTempEff = derive { name="modTempEff"; version="1.5.2"; sha256="00xdvc0i3p8wq913giy44w0xz07sa4bdgqpi7pmpbv2c5wj30pk1"; depends=[mgcv]; }; modeest = derive { name="modeest"; version="2.1"; sha256="0l4y7yhkgsxycdd2lck0g8g6k2r059hwlrrcpl46md3rva4jgbnp"; depends=[]; }; modehunt = derive { name="modehunt"; version="1.0.6"; sha256="15rq1yyrjhsn2rlkyiqj36jvji635hy6jsih845mfxdpn4vnssa3"; depends=[]; }; +modelObj = derive { name="modelObj"; version="1.0"; sha256="0r4smak9hni9pzih4nzkpv3bq18acrsmmxs1a13wq3pgjfvkwa63"; depends=[]; }; modelfree = derive { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; modeltools = derive { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; }; -modiscloud = derive { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date sp sfsmisc raster rgdal]; }; -moduleColor = derive { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut]; }; +modiscloud = derive { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; +moduleColor = derive { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut impute]; }; mokken = derive { name="mokken"; version="2.7.7"; sha256="1v0khh1bb2h7j2x54mdw8vqlimhw25r2ps89hw4l88qfaz05ir77"; depends=[poLCA]; }; -mombf = derive { name="mombf"; version="1.5.9"; sha256="0lc3rrmm2vsa4mg2zkbhp5dpnps7w0ld35lav19ff86kccspw1rg"; depends=[mvtnorm ncvreg actuar mgcv survival]; }; +mombf = derive { name="mombf"; version="1.5.9"; sha256="0lc3rrmm2vsa4mg2zkbhp5dpnps7w0ld35lav19ff86kccspw1rg"; depends=[actuar mgcv mvtnorm ncvreg survival]; }; momentchi2 = derive { name="momentchi2"; version="0.1.0"; sha256="02k4hzhqmqh7sx7dzb6w84fc1f5523md3284y4gvdbaw9y34ayk8"; depends=[]; }; moments = derive { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; mondate = derive { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; -mongolite = derive { name="mongolite"; version="0.2"; sha256="0lyq565c8xqxcm5sbg1rp3myppbw4hbqr3fiqzvcqpp72ar6ywvv"; depends=[jsonlite]; }; +mongolite = derive { name="mongolite"; version="0.4"; sha256="0jrjf9sh8y7n4lgy54y5pl9dw6z4c5qb903l0907finm749cb2w1"; depends=[jsonlite]; }; monitoR = derive { name="monitoR"; version="1.0.3"; sha256="0g2dhyz3411pa6kcsmmi9x77ygvdrvas3k9ps0w2r69mfab785c6"; depends=[tuneR]; }; monmlp = derive { name="monmlp"; version="1.1.2"; sha256="14x6xz07hg2c5n36rc314z66jqvgmicjxi2vsqyy91vwjxs9akrm"; depends=[]; }; -monomvn = derive { name="monomvn"; version="1.9-5"; sha256="1fh0c1234hb5f3rwy85i4rlzc3n1851q5mivckcjs2vdm9rz25mg"; depends=[pls lars MASS]; }; +monomvn = derive { name="monomvn"; version="1.9-5"; sha256="1fh0c1234hb5f3rwy85i4rlzc3n1851q5mivckcjs2vdm9rz25mg"; depends=[lars MASS pls]; }; monreg = derive { name="monreg"; version="0.1.3"; sha256="08rcg2xffa61cgqy8g98b0f7jqhd4yp8nx6g4bq3g722aqx4nfg3"; depends=[]; }; moonBook = derive { name="moonBook"; version="0.1.3"; sha256="1wy8qwzymh482gfb4v9v74k666mq8dz2yird7gz43l3hps22kfgb"; depends=[nortest survival]; }; moonsun = derive { name="moonsun"; version="0.1.3"; sha256="1y8mwxmcy4iz444c2fayyi4i0jk1k561dp6cbjg2b3lmdml0whmi"; depends=[]; }; mopsocd = derive { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; morgenstemning = derive { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; morse = derive { name="morse"; version="1.0.2"; sha256="044aljv48mfq6yj9i77yqf03qa4qqkncaalzhph3wr9w4jvxpxn5"; depends=[plyr]; }; -mosaic = derive { name="mosaic"; version="0.9.2-2"; sha256="1fx3nbndvvif1pwl013clh91s229yg7fnr0kp842jyx03hkcinba"; depends=[car dplyr lattice ggplot2 mosaicData MASS reshape2 plyr latticeExtra gridExtra ggdendro]; }; +mosaic = derive { name="mosaic"; version="0.10.0"; sha256="0hhln6kfxdk6z4rmi3378cs18ziwa5awi53ylnx5kva7f42m5jxr"; depends=[car dplyr ggdendro ggplot2 gridExtra lattice latticeExtra lazyeval MASS mosaicData plyr readr reshape2]; }; mosaicData = derive { name="mosaicData"; version="0.9.1"; sha256="0gxnw3x806pm97x1043qq3qf1cwn1z1771cayp3xlh5khn5bijk7"; depends=[]; }; moult = derive { name="moult"; version="1.4"; sha256="0nglf7wijp2v66fpyh88glbn1glp8vvkbvpc1g6136bg6ahbbkkl"; depends=[Formula Matrix]; }; mountainplot = derive { name="mountainplot"; version="1.0"; sha256="1hjmzig0s4vjlkpqhvf4v6z2gd8ljy14z5n1m9y21is9yp2cy6xf"; depends=[lattice]; }; mousetrack = derive { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; -movMF = derive { name="movMF"; version="0.2-0"; sha256="1p9ay7w93gyx4janw23iwg2j0wkvnvzalaa20n1rlahhmh327g7i"; depends=[skmeans clue slam]; }; -move = derive { name="move"; version="1.4.496"; sha256="0p20c6rqxk299pqd10icq4a59yn152jfnwh6sw48sg8cc9wp24k3"; depends=[geosphere sp raster rgdal]; }; -mp = derive { name="mp"; version="0.2.0"; sha256="1vpjrx04yn1rdmrhj42rhc757cj02sghrv0i5jfm4k2y28ab7qh1"; depends=[svd Rcpp Rcpp RcppArmadillo]; }; -mpMap = derive { name="mpMap"; version="1.14"; sha256="0gmhg5ps8yli8699a5aw26skfbjxx4zpp0paqxxdc0zl28l0pdff"; depends=[gdata seriation qtl wgaim]; }; +movMF = derive { name="movMF"; version="0.2-0"; sha256="1p9ay7w93gyx4janw23iwg2j0wkvnvzalaa20n1rlahhmh327g7i"; depends=[clue skmeans slam]; }; +move = derive { name="move"; version="1.4.496"; sha256="0p20c6rqxk299pqd10icq4a59yn152jfnwh6sw48sg8cc9wp24k3"; depends=[geosphere raster rgdal sp]; }; +mp = derive { name="mp"; version="0.2.0"; sha256="1vpjrx04yn1rdmrhj42rhc757cj02sghrv0i5jfm4k2y28ab7qh1"; depends=[Rcpp RcppArmadillo svd]; }; +mpMap = derive { name="mpMap"; version="1.14"; sha256="0gmhg5ps8yli8699a5aw26skfbjxx4zpp0paqxxdc0zl28l0pdff"; depends=[gdata qtl seriation wgaim]; }; mpa = derive { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; }; -mpath = derive { name="mpath"; version="0.1-17"; sha256="031mf0b32435y0cfar7zh9d1wd62ghqpspipin1cjhvnr2lyzw21"; depends=[MASS glmnet pscl numDeriv]; }; +mpath = derive { name="mpath"; version="0.1-18"; sha256="04d6lbsqjmr6pkyfpr2vw3rhv5hi044rx1n1isgw96j2c0f7dgzv"; depends=[glmnet MASS numDeriv pscl]; }; mpcv = derive { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; mph = derive { name="mph"; version="0.9"; sha256="11wcy23sv8x7aq6ky8wi0cq55yhjkkm9hn672qy803dwzzxv5y61"; depends=[]; }; -mpm = derive { name="mpm"; version="1.0-22"; sha256="0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk"; depends=[MASS KernSmooth]; }; +mplot = derive { name="mplot"; version="0.6.2"; sha256="0lnslv471abhfr245wx24ps3c97qs54i43ybpc1f8mqsxh0vxz3s"; depends=[bestglm doParallel foreach googleVis leaps plyr shiny shinydashboard]; }; +mpm = derive { name="mpm"; version="1.0-22"; sha256="0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk"; depends=[KernSmooth MASS]; }; mpmcorrelogram = derive { name="mpmcorrelogram"; version="0.1-3"; sha256="0qgzsh744002whh3v1hrxs1i0xnk9zgfgkdgx2f0ffj00vvnwr97"; depends=[vegan]; }; mpmi = derive { name="mpmi"; version="0.41"; sha256="1iwdhvdglsamzq18f0r5mh0anrd4ffrddafdlbw16kr8jy0c8fdn"; depends=[KernSmooth]; }; -mpoly = derive { name="mpoly"; version="0.1.0"; sha256="0q0ypaj1r12yc72b6qb22rvgrzc703v4n7ns2yg1n9ff20y5m4z0"; depends=[stringr rSymPy rJython rJava rjson partitions plyr]; }; +mpoly = derive { name="mpoly"; version="0.1.0"; sha256="0q0ypaj1r12yc72b6qb22rvgrzc703v4n7ns2yg1n9ff20y5m4z0"; depends=[partitions plyr rJava rjson rJython rSymPy stringr]; }; mppa = derive { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; }; mpt = derive { name="mpt"; version="0.5-1"; sha256="1b6n7kivkj4ndcc27jmznx9dh40kvjjk7hfxh21kmnknl5ap4ffb"; depends=[]; }; mra = derive { name="mra"; version="2.16.4"; sha256="134fw4bv34bycgia58z238acj7kb8jkw51pjfa2cwprrgsjdpf5g"; depends=[]; }; mratios = derive { name="mratios"; version="1.3.17"; sha256="0a2pn4234ri5likaqbxgkw8xqmwchr6fak3nninral0yzd4rcal5"; depends=[mvtnorm]; }; -mrds = derive { name="mrds"; version="2.1.12"; sha256="1v7lv3ssg9m8bx2gskzf31lkg3sxsdkvknrdx9aawdh3mzxwcys7"; depends=[optimx mgcv Rsolnp]; }; +mrds = derive { name="mrds"; version="2.1.12"; sha256="1v7lv3ssg9m8bx2gskzf31lkg3sxsdkvknrdx9aawdh3mzxwcys7"; depends=[mgcv optimx Rsolnp]; }; mreg = derive { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mritc = derive { name="mritc"; version="0.5-0"; sha256="1344x7gc7wvmcqp0sydppavavvps5v7bs0dza2fr8rz3sn4as8sa"; depends=[lattice misc3d oro_nifti]; }; msBP = derive { name="msBP"; version="1.0-2.1"; sha256="1yprhglqykh6v2jicab25a0ny1r49kaj3i04fspi3was2md2qbzd"; depends=[DPpackage]; }; -msSurv = derive { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class lattice]; }; +msSurv = derive { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; msap = derive { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; -msarc = derive { name="msarc"; version="1.4.5"; sha256="1jv364502m6q2w039dmdhwsx5id39jc4xcabyrbwbrgy65kwfspg"; depends=[gplots XLConnect wordcloud RColorBrewer]; }; -msda = derive { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[Matrix MASS]; }; +msarc = derive { name="msarc"; version="1.4.5"; sha256="1jv364502m6q2w039dmdhwsx5id39jc4xcabyrbwbrgy65kwfspg"; depends=[AnnotationDbi gplots RColorBrewer wordcloud XLConnect]; }; +msda = derive { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; mseapca = derive { name="mseapca"; version="1.0"; sha256="115njdk8cv55zxd38hq9qaca686ykckni0f3xl8w3bn32gb5g9a7"; depends=[XML]; }; -msgl = derive { name="msgl"; version="2.0.125.1"; sha256="1k2n8yn9j5sknw95saq2zgl3jfanyp3c2xyj49wqgawhwsw81jdh"; depends=[Matrix sglOptim Rcpp RcppProgress RcppArmadillo BH sglOptim]; }; +msgl = derive { name="msgl"; version="2.0.125.1"; sha256="1k2n8yn9j5sknw95saq2zgl3jfanyp3c2xyj49wqgawhwsw81jdh"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpackR = derive { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; msgps = derive { name="msgps"; version="1.3"; sha256="0nvxy9a41z5d111gqr1gh521imm795l1li70g1mzrag1gpg810c5"; depends=[]; }; msir = derive { name="msir"; version="1.3"; sha256="0d7zxjmhr1ri3qz3fdkf56fi5dz2p9lb2vyqccrpn7js2ibkqhpl"; depends=[mclust]; }; -msm = derive { name="msm"; version="1.5"; sha256="12vw5qmrvmpvg371fx4g55ydwa83y433z6v25b7pnl5hcbc8kfj4"; depends=[survival mvtnorm expm]; }; -msme = derive { name="msme"; version="0.5.1"; sha256="1bkj10pgmv9q61384fwd2pxccclclc3knc5x212p42w4w49hnm1q"; depends=[MASS lattice]; }; +msm = derive { name="msm"; version="1.5"; sha256="12vw5qmrvmpvg371fx4g55ydwa83y433z6v25b7pnl5hcbc8kfj4"; depends=[expm mvtnorm survival]; }; +msme = derive { name="msme"; version="0.5.1"; sha256="1bkj10pgmv9q61384fwd2pxccclclc3knc5x212p42w4w49hnm1q"; depends=[lattice MASS]; }; msos = derive { name="msos"; version="1.0.1"; sha256="0fbxi8x83sj8a6bahc7q28vql00pxqdia2vxb6ilsc459xaph6vc"; depends=[mclust tree]; }; -msr = derive { name="msr"; version="0.4.1"; sha256="1kfj6xq7l32ligc53akiym3s9if87087gan8nqz4w7d8nxp693s7"; depends=[Matrix class glmnet e1071 rgl RColorBrewer colorspace]; }; -mstate = derive { name="mstate"; version="0.2.7"; sha256="0rys25cwr814k8z65206s12yv18dala66b3nlfq882dw5cfpaybl"; depends=[survival RColorBrewer]; }; -mtk = derive { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[stringr XML sensitivity lhs rgl]; }; +msr = derive { name="msr"; version="0.4.1"; sha256="1kfj6xq7l32ligc53akiym3s9if87087gan8nqz4w7d8nxp693s7"; depends=[class colorspace e1071 glmnet Matrix RColorBrewer rgl]; }; +mstate = derive { name="mstate"; version="0.2.7"; sha256="0rys25cwr814k8z65206s12yv18dala66b3nlfq882dw5cfpaybl"; depends=[RColorBrewer survival]; }; +mtk = derive { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive { name="mtsdi"; version="0.3.3"; sha256="1hx4m1jnfhkycxizxaklnd9illajqvv1nml8ajfn3kjmrb5z7qlp"; depends=[gam]; }; muStat = derive { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; muhaz = derive { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; muir = derive { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; -multcomp = derive { name="multcomp"; version="1.4-0"; sha256="1n1qbg7amk385ryni97qdbzcinpwpxldl3r477r1kfgv8csynxhj"; depends=[mvtnorm survival TH_data sandwich codetools]; }; +multcomp = derive { name="multcomp"; version="1.4-0"; sha256="1n1qbg7amk385ryni97qdbzcinpwpxldl3r477r1kfgv8csynxhj"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive { name="multcompView"; version="0.1-5"; sha256="0vfgvqxqgxyifkqs3r5xxj7rfn8lfmby6wyyiqa5jv01073xchib"; depends=[]; }; multgee = derive { name="multgee"; version="1.5.1"; sha256="1ycbbri26hahbi3q4mrsyhrh9bwj89dyv6gvrpx58ghrlsnakjy1"; depends=[gnm VGAM]; }; multiAssetOptions = derive { name="multiAssetOptions"; version="0.1-1"; sha256="1kb4qxyl9shvrpqfxq26lhh3sssmyjcnhhcl6gcbb0s86snh9ms9"; depends=[Matrix]; }; -multiDimBio = derive { name="multiDimBio"; version="0.3.3"; sha256="1aj6yam31mr0abjb6m5m85r1w71snha4s7h4ikyw66sc73xkmb9m"; depends=[ggplot2 lme4 misc3d MASS RColorBrewer]; }; +multiDimBio = derive { name="multiDimBio"; version="0.3.3"; sha256="1aj6yam31mr0abjb6m5m85r1w71snha4s7h4ikyw66sc73xkmb9m"; depends=[ggplot2 lme4 MASS misc3d pcaMethods RColorBrewer]; }; multiPIM = derive { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; }; multiband = derive { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; }; -multibiplotGUI = derive { name="multibiplotGUI"; version="0.0-1"; sha256="14zgn86zwwdchhr5dzqxxxsf0dy6kny4ixvd77y08454lni0a69r"; depends=[rgl tkrplot RODBC]; }; +multibiplotGUI = derive { name="multibiplotGUI"; version="0.0-1"; sha256="14zgn86zwwdchhr5dzqxxxsf0dy6kny4ixvd77y08454lni0a69r"; depends=[rgl RODBC tkrplot]; }; multic = derive { name="multic"; version="0.3.8.1"; sha256="06lc9kn0z3s7x00hz8vj903q0c6cncnj4v3ygvd2yvkgcbhfvjd0"; depends=[]; }; -multicon = derive { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[psych abind foreach mvtnorm sciplot]; }; -multicool = derive { name="multicool"; version="0.1-6"; sha256="0hzwxrcsz7dm4ilv8rpkcwi61ssym94ki8ayssfh2r2ghy9w9xlw"; depends=[Rcpp Rcpp]; }; +multicon = derive { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; +multicool = derive { name="multicool"; version="0.1-6"; sha256="0hzwxrcsz7dm4ilv8rpkcwi61ssym94ki8ayssfh2r2ghy9w9xlw"; depends=[Rcpp]; }; multigroup = derive { name="multigroup"; version="0.4.4"; sha256="1r79zapziz3jkd654bwsc5g0rphrk9hkp1fpik8jvjsa1cix40mq"; depends=[MASS]; }; -multilevel = derive { name="multilevel"; version="2.5"; sha256="0pzv5xc8p6cpzzv9iq3a3ib1dcan445mm12whf3d6qkz2k4778g6"; depends=[nlme MASS]; }; -multilevelPSA = derive { name="multilevelPSA"; version="1.2.2"; sha256="0z3qnv14sdkfvyw2wjrfz26r7sr7vv3rlr8n4gf99rwv6k34bdsg"; depends=[ggplot2 xtable PSAgraphics plyr psych reshape proto party]; }; -multimark = derive { name="multimark"; version="1.1.4"; sha256="045lfgzxwz4m1y5gny2y92cmix6wxi1sl486gajal2scfib31rgv"; depends=[statmod Matrix RMark coda Brobdingnag mvtnorm]; }; +multilevel = derive { name="multilevel"; version="2.5"; sha256="0pzv5xc8p6cpzzv9iq3a3ib1dcan445mm12whf3d6qkz2k4778g6"; depends=[MASS nlme]; }; +multilevelPSA = derive { name="multilevelPSA"; version="1.2.2"; sha256="0z3qnv14sdkfvyw2wjrfz26r7sr7vv3rlr8n4gf99rwv6k34bdsg"; depends=[ggplot2 party plyr proto PSAgraphics psych reshape xtable]; }; +multimark = derive { name="multimark"; version="1.1.4"; sha256="045lfgzxwz4m1y5gny2y92cmix6wxi1sl486gajal2scfib31rgv"; depends=[Brobdingnag coda Matrix mvtnorm RMark statmod]; }; multinbmod = derive { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; -multinomRob = derive { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[rgenoud MASS mvtnorm]; }; -multipleNCC = derive { name="multipleNCC"; version="1.0"; sha256="13z6yq77h1r6kp8wgza58c6yp9a1gqm0w36x534mxbhcmingdw9f"; depends=[survival gam]; }; -multiplex = derive { name="multiplex"; version="1.5"; sha256="1sc4jnmh3lfpx92cpqd8phm09dn9xaq4qdq9301dccw3f0m260md"; depends=[]; }; +multinomRob = derive { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; +multipleNCC = derive { name="multipleNCC"; version="1.0"; sha256="13z6yq77h1r6kp8wgza58c6yp9a1gqm0w36x534mxbhcmingdw9f"; depends=[gam survival]; }; +multiplex = derive { name="multiplex"; version="1.6"; sha256="052qjqkwf2sp4w7hv5gj9x3vhwjpa6k10sr969283z7aw6c1yb4g"; depends=[]; }; multipol = derive { name="multipol"; version="1.0-6"; sha256="1yjz0p4mcgzs98s61i8315wyhh986jxp8b0lq66375ckpr2ddcss"; depends=[abind]; }; multirich = derive { name="multirich"; version="2.0.2"; sha256="1lqc4np45p9ar9l8l1m5bdh98fsmhvzj8s0b2mcp9cqrvnhp1irc"; depends=[]; }; multisensi = derive { name="multisensi"; version="1.0-8"; sha256="168g6hym5chz69wa3vfprg1m1c935wh7bi3gfz5calxiqf89mncz"; depends=[]; }; @@ -4667,94 +4772,95 @@ multitable = derive { name="multitable"; version="1.6"; sha256="067bgl793wwvb1rh multitaper = derive { name="multitaper"; version="1.0-11"; sha256="1s0lmjzpyd7zmc2p1ywv5fm7qkq357p70b76gw9wjlms6d81j1n4"; depends=[]; }; multivator = derive { name="multivator"; version="1.1-4"; sha256="125ifkpm1pny4rjpzirnwpmpjfg0y8w0rygj0way0p1qwm0l207n"; depends=[emulator mvtnorm]; }; multiway = derive { name="multiway"; version="1.0-0"; sha256="1yp9cgi5pkby1qszc8qrw3pv8q254cr6grhmdlmaf2yrhmpfahv9"; depends=[]; }; -multiwayvcov = derive { name="multiwayvcov"; version="1.2.1"; sha256="15gxcrg2i1aqbxkif5dmdz81yzqj7a4hq0dcd0narzsvm5b4w9py"; depends=[sandwich boot]; }; +multiwayvcov = derive { name="multiwayvcov"; version="1.2.1"; sha256="15gxcrg2i1aqbxkif5dmdz81yzqj7a4hq0dcd0narzsvm5b4w9py"; depends=[boot sandwich]; }; multxpert = derive { name="multxpert"; version="0.1"; sha256="03mvf4m0kabm22vy4zkj1cfh884larpj8cbgg3p9l3pag20snf1l"; depends=[mvtnorm]; }; -muma = derive { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[car pdist pls gplots mvtnorm robustbase gtools bitops caTools pcaPP rrcov]; }; -munfold = derive { name="munfold"; version="0.3-3"; sha256="1szm3c1xi1s7r1w6h7xb4x538sbczrblb70a3ysxf4q8c1ihmly9"; depends=[memisc MASS]; }; +muma = derive { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; }; +munfold = derive { name="munfold"; version="0.3-3"; sha256="1szm3c1xi1s7r1w6h7xb4x538sbczrblb70a3ysxf4q8c1ihmly9"; depends=[MASS memisc]; }; munsell = derive { name="munsell"; version="0.4.2"; sha256="1bi5yi0i80778bbzx2rm4f0glpc34kvh24pwwfhm4v32izsqgrw4"; depends=[colorspace]; }; musicNMR = derive { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; }; -mutoss = derive { name="mutoss"; version="0.1-10"; sha256="1pijr3admnciiwdgxbdac4352m7h08jyvpj7vdd27yx07wp2rri3"; depends=[mvtnorm plotrix multcomp]; }; -mutossGUI = derive { name="mutossGUI"; version="0.1-9"; sha256="1xdby6n0w1155kx6mhinvgqm0ssgyy4443pkq3k88a5s4bfxw5bw"; depends=[mutoss multcomp plotrix rJava JavaGD CommonJavaJars JGR]; }; -mvMORPH = derive { name="mvMORPH"; version="1.0.5"; sha256="184ywvgi2dz77ivl2g7spx065wh1ap2lpmvbrhik9sgysygkijs2"; depends=[phytools ape corpcor subplex spam]; }; -mvProbit = derive { name="mvProbit"; version="0.1-0"; sha256="0fnrlralydlsf9iphq385f8hpqigfmi8rafvgp443gygvpq5b6g0"; depends=[mvtnorm maxLik abind bayesm miscTools]; }; -mvSLOUCH = derive { name="mvSLOUCH"; version="1.1.5"; sha256="1cq1j4f1k0xhq2ncmji1a4p4m6h7k2afsr39abib4g3md902v0hp"; depends=[ouch ape numDeriv mvtnorm corpcor]; }; +mutoss = derive { name="mutoss"; version="0.1-10"; sha256="1pijr3admnciiwdgxbdac4352m7h08jyvpj7vdd27yx07wp2rri3"; depends=[multcomp multtest mvtnorm plotrix]; }; +mutossGUI = derive { name="mutossGUI"; version="0.1-9"; sha256="1xdby6n0w1155kx6mhinvgqm0ssgyy4443pkq3k88a5s4bfxw5bw"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; +mvMORPH = derive { name="mvMORPH"; version="1.0.5"; sha256="184ywvgi2dz77ivl2g7spx065wh1ap2lpmvbrhik9sgysygkijs2"; depends=[ape corpcor phytools spam subplex]; }; +mvProbit = derive { name="mvProbit"; version="0.1-0"; sha256="0fnrlralydlsf9iphq385f8hpqigfmi8rafvgp443gygvpq5b6g0"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; +mvSLOUCH = derive { name="mvSLOUCH"; version="1.1.5"; sha256="1cq1j4f1k0xhq2ncmji1a4p4m6h7k2afsr39abib4g3md902v0hp"; depends=[ape corpcor mvtnorm numDeriv ouch]; }; mvShapiroTest = derive { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; -mvabund = derive { name="mvabund"; version="3.9.3"; sha256="1vr4rw8ivkhmzrpvz2k8v594cavrw88i7nqr9g1mar76d9mpchkx"; depends=[Rcpp MASS tweedie statmod Rcpp]; }; +mvabund = derive { name="mvabund"; version="3.10.4"; sha256="1hza09nghgz0iyfayqabf5d0yb6zqnvhwmprif6y9qix8jscilwl"; depends=[MASS Rcpp statmod tweedie]; }; mvbutils = derive { name="mvbutils"; version="2.7.4.1"; sha256="1vs97yia78xh35sdfv5pj3ddqmy83qgamvyyh9gjg0vdznqhffzg"; depends=[]; }; mvc = derive { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; -mvctm = derive { name="mvctm"; version="1.0"; sha256="1naxjh2k3vv4wlpzzx0y2zwvbn4kdqyls8a8qx6bz609ynzay5r9"; depends=[Formula nlme MNM quantreg Rfit]; }; +mvctm = derive { name="mvctm"; version="1.0"; sha256="1naxjh2k3vv4wlpzzx0y2zwvbn4kdqyls8a8qx6bz609ynzay5r9"; depends=[Formula MNM nlme quantreg Rfit]; }; mvcwt = derive { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; }; mvglmmRank = derive { name="mvglmmRank"; version="1.0-2"; sha256="0gpp0ibgji86pxscqzcws0d1qn1ciqqvyfb0x2v18580r4cx8jv7"; depends=[Matrix numDeriv]; }; mvinfluence = derive { name="mvinfluence"; version="0.6"; sha256="1cd5p6cl2zln8madjf3vsbmqlg4nsklzzy6ngdd5glj1a9qapd6c"; depends=[car heplots]; }; mvmesh = derive { name="mvmesh"; version="1.0"; sha256="168s3n3ibiwdk0wys4kjj1xdpkz891rq5dv3lqf4pil83kbw8jw9"; depends=[rcdd rgl]; }; -mvmeta = derive { name="mvmeta"; version="0.4.5"; sha256="0faczanbz6i7794sqxm21a6v52cs5hrjjzdypdvi23bkl4mkxjrb"; depends=[]; }; +mvmeta = derive { name="mvmeta"; version="0.4.7"; sha256="1yadaviq66wdfs0dipn6gxk7jqvzwzjdr8lkfggdsl4vyyi9pwip"; depends=[]; }; mvna = derive { name="mvna"; version="1.2-3"; sha256="1gwv17j6w9c38bqvnasv9kfigbdxiqkzwj89gqmkxgw715f9nnpp"; depends=[lattice]; }; -mvnfast = derive { name="mvnfast"; version="0.1.3"; sha256="1ghm6zdrh2ax8r4jin8gka0qjwcsixn5faclf17sr5bx7l5b62np"; depends=[Rcpp Rcpp RcppArmadillo BH]; }; +mvnfast = derive { name="mvnfast"; version="0.1.3"; sha256="1ghm6zdrh2ax8r4jin8gka0qjwcsixn5faclf17sr5bx7l5b62np"; depends=[BH Rcpp RcppArmadillo]; }; mvngGrAd = derive { name="mvngGrAd"; version="0.1.5"; sha256="0ir4pakfb2jq84rbfqix6rph8q6cgadjdn49rrdl4439b8hlsg8k"; depends=[]; }; mvnmle = derive { name="mvnmle"; version="0.1-11"; sha256="02mpmrr22cqb3v8x7kydgg715yl3lrdgzgdqpchmp0xrl2db8gq4"; depends=[]; }; mvnormtest = derive { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; mvnpermute = derive { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; -mvoutlier = derive { name="mvoutlier"; version="2.0.6"; sha256="00kim5i8xdbaqc0l16w1pif5yfqf741x686lq6drb243jl89rfjv"; depends=[sgeostat robCompositions robustbase]; }; +mvoutlier = derive { name="mvoutlier"; version="2.0.6"; sha256="00kim5i8xdbaqc0l16w1pif5yfqf741x686lq6drb243jl89rfjv"; depends=[robCompositions robustbase sgeostat]; }; mvprpb = derive { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrtn = derive { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; -mvsf = derive { name="mvsf"; version="1.0"; sha256="1krvsxvj38c5ndvnsd1m18fkqld748kn5j2jbgdr3ca9m3i5nlwf"; depends=[nortest mvnormtest]; }; +mvsf = derive { name="mvsf"; version="1.0"; sha256="1krvsxvj38c5ndvnsd1m18fkqld748kn5j2jbgdr3ca9m3i5nlwf"; depends=[mvnormtest nortest]; }; mvtmeta = derive { name="mvtmeta"; version="1.0"; sha256="0g0d4lrz854wkd0dz5aiad54i46aqkfhsq6cpbsfv0w5l2kwiqqz"; depends=[gtools]; }; mvtnorm = derive { name="mvtnorm"; version="1.0-2"; sha256="0v4a05i92g70vf8xkh6as7566zgjcnpzr1ghhyszqk1f0maw9gxc"; depends=[]; }; mvtsplot = derive { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; -mwa = derive { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem rJava MASS]; }; -mwaved = derive { name="mwaved"; version="1.1.1"; sha256="1hn6nbwawkizv9v4k98hm5lz94yha2fng76x0r9f804whmv1pz36"; depends=[Rcpp shiny Rcpp]; }; +mwa = derive { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem MASS rJava]; }; +mwaved = derive { name="mwaved"; version="1.1.1"; sha256="1hn6nbwawkizv9v4k98hm5lz94yha2fng76x0r9f804whmv1pz36"; depends=[Rcpp shiny]; }; mxkssd = derive { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; -myTAI = derive { name="myTAI"; version="0.0.2"; sha256="1qnnlf8c8qkcvl5sh9qd19drlfmjhmy3grxhlnlbz7v11zcbvah8"; depends=[Rcpp nortest fitdistrplus foreach doParallel dplyr Rcpp]; }; +myTAI = derive { name="myTAI"; version="0.1.0"; sha256="0qz2mm3ca5i93kz3pg8llpniix3vdy7mxz1n8k36iap09rbsrgmi"; depends=[doParallel dplyr fitdistrplus foreach nortest Rcpp]; }; mycobacrvR = derive { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive { name="mycor"; version="0.1"; sha256="1ibcxl9v2d2mxpwad0rv5dw1j645rrg05f4aqvyhyd40hz9823mr"; depends=[lattice]; }; myepisodes = derive { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; -mztwinreg = derive { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[rms mclogit]; }; +mztwinreg = derive { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; }; nCDunnett = derive { name="nCDunnett"; version="1.0.0"; sha256="0n5zzsdrhra5xql110wrxbfdjm3fwa6qhvnpj89w9ph9nr4ad8gf"; depends=[]; }; nCal = derive { name="nCal"; version="2015.3-3"; sha256="0vj6l8w29ymj1v18mb4qyw6w1xpmwx5bvil4kjb82gccsb95ir10"; depends=[drc gdata gWidgets kyotil]; }; nFCA = derive { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; }; -nFactors = derive { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[MASS psych boot lattice]; }; +nFactors = derive { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[boot lattice MASS psych]; }; nLTT = derive { name="nLTT"; version="1.1"; sha256="0hrrwil7vcym7zjbnzviw13p60y14w660vndvc2lm5lmhbb8nhcn"; depends=[ape coda deSolve]; }; -nabor = derive { name="nabor"; version="0.4.4"; sha256="0465wkyggz4665b2ph1qpyxsmak0arfzpxaci1r0lrf5ddyp0n6y"; depends=[Rcpp Rcpp RcppEigen BH]; }; -nadiv = derive { name="nadiv"; version="2.13.2"; sha256="1r63z08k46b6hryxracicsw1hr91x4pgk2x58c9nijdni4my7kkc"; depends=[Matrix]; }; +nabor = derive { name="nabor"; version="0.4.6"; sha256="0kd0h8n5yrn16vrfdchdiqzws05q0fm8z577p20dm18gdcs2vbxv"; depends=[BH Rcpp RcppEigen]; }; +nadiv = derive { name="nadiv"; version="2.13.3"; sha256="0ph05a1yvphij41fgm4gnvijqni29n4jx2my6s0pd9l67bwa56c8"; depends=[Matrix]; }; namespace = derive { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nanop = derive { name="nanop"; version="2.0-5"; sha256="0zdn2hgp516hcqpc2w2vzhhalcr05dlw539zj3afzi75w8rwb71z"; depends=[distrEx rgl]; }; nasaweather = derive { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; -nat = derive { name="nat"; version="1.6.4"; sha256="1a4wr1378y8crmpk150gmzjc12wn4q9l6nbghddizyw9827b5my1"; depends=[rgl nabor igraph filehash digest nat_utils plyr yaml]; }; -nat_nblast = derive { name="nat.nblast"; version="1.5"; sha256="1slpk126fwgn90j3aazlf3pw2ij050dghc1yqadv6mjcj82qpm5i"; depends=[rgl nat nabor dendroextras plyr spam]; }; -nat_templatebrains = derive { name="nat.templatebrains"; version="0.4.1"; sha256="06vqnrwcara4ljkf5wbwqbsfx1ypd8xsv8pbrs5x6hyj5jxnnvaz"; depends=[rgl nat]; }; +nat = derive { name="nat"; version="1.6.6"; sha256="0jqpj9hrz8xqikl84b9nzi1hh82cmry18vpca7s8dl4824yadkrw"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; +nat_nblast = derive { name="nat.nblast"; version="1.5"; sha256="1slpk126fwgn90j3aazlf3pw2ij050dghc1yqadv6mjcj82qpm5i"; depends=[dendroextras nabor nat plyr rgl spam]; }; +nat_templatebrains = derive { name="nat.templatebrains"; version="0.4.1"; sha256="06vqnrwcara4ljkf5wbwqbsfx1ypd8xsv8pbrs5x6hyj5jxnnvaz"; depends=[nat rgl]; }; nat_utils = derive { name="nat.utils"; version="0.4.2"; sha256="0k5bdqwrbq82bb9ld90ia7b4vjaczba20h231a129rkszsy6sz9v"; depends=[]; }; naturalsort = derive { name="naturalsort"; version="0.1.2"; sha256="0m8a8z0n5zmmgpmpn5w87j2jfsz1igz3x133z3q25h8jlyaxy750"; depends=[]; }; -nbpMatching = derive { name="nbpMatching"; version="1.4.4"; sha256="0dnj97aj2x81yppw3rayxxaf2bb68l5x5f2852l5xmvpxb73w478"; depends=[Hmisc MASS]; }; -ncappc = derive { name="ncappc"; version="0.1"; sha256="1145y9k718245mzs8q33mjwcln79dmiyawy771zrk3kpxhfb5985"; depends=[ggplot2 gridExtra scales gtable PerformanceAnalytics lattice knitr xtable reshape2]; }; +nbconvertR = derive { name="nbconvertR"; version="1.0"; sha256="1yjsw5aq68ya4k1nl2n6q5d5z5yzqskgnpj3gms67ha3dhmz78jr"; depends=[]; }; +nbpMatching = derive { name="nbpMatching"; version="1.4.5"; sha256="1bglrzhap9rar6c8c2c5009l1ljq44mys66jpafw4xyw2pq7djqg"; depends=[Hmisc MASS]; }; +ncappc = derive { name="ncappc"; version="0.1"; sha256="1145y9k718245mzs8q33mjwcln79dmiyawy771zrk3kpxhfb5985"; depends=[ggplot2 gridExtra gtable knitr lattice PerformanceAnalytics reshape2 scales xtable]; }; ncbit = derive { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; ncdf = derive { name="ncdf"; version="1.6.8"; sha256="1vrbrrqij7p712wfrki09749yryzr9lg4p95yqvb0zzggqpw2snm"; depends=[]; }; -ncdf_tools = derive { name="ncdf.tools"; version="0.7.1.291"; sha256="149d89kim67q77w17afc5x7hkvmk05gfkaw6cpl583j2zxingify"; depends=[RNetCDF chron abind plotrix raster RColorBrewer JBTools]; }; +ncdf_tools = derive { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[abind chron JBTools plotrix raster RColorBrewer RNetCDF]; }; ncdf4 = derive { name="ncdf4"; version="1.13"; sha256="07s1lh5cg4fck7sapfka2skky70max1rfhimblnqf41phndxjcsv"; depends=[]; }; -ncdf4_helpers = derive { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[ncdf4 PCICt abind]; }; +ncdf4_helpers = derive { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[abind ncdf4 PCICt]; }; ncf = derive { name="ncf"; version="1.1-5"; sha256="03nbmg9swxhpwrmfjsanp6fj5l2nw160sys70mj10a0ljlaf904z"; depends=[]; }; ncg = derive { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; }; ncvreg = derive { name="ncvreg"; version="3.4-0"; sha256="12ns62l0wdj9vkmqbdyxcwb15g3hz45dxcm7zl189iljcsl65977"; depends=[]; }; -ndl = derive { name="ndl"; version="0.2.16"; sha256="1l56kg3x4579hzr4sig3iwrd81rhm8nmmrqfs54zxqv5yxpk3hp4"; depends=[Rcpp MASS Rcpp]; }; -ndtv = derive { name="ndtv"; version="0.6.1"; sha256="0833n3ddhx1ixqi540j6b2bfmzhpdpg8cwd6d5y7shfxslrnpay9"; depends=[network networkDynamic animation sna MASS statnet_common jsonlite base64]; }; +ndl = derive { name="ndl"; version="0.2.16"; sha256="1l56kg3x4579hzr4sig3iwrd81rhm8nmmrqfs54zxqv5yxpk3hp4"; depends=[MASS Rcpp]; }; +ndtv = derive { name="ndtv"; version="0.6.1"; sha256="0833n3ddhx1ixqi540j6b2bfmzhpdpg8cwd6d5y7shfxslrnpay9"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; neariso = derive { name="neariso"; version="1.0"; sha256="1npfd5g5xqjpsm5hvhwy7y84sj5lqw9yzbnxk6aqi80gfxhfml4c"; depends=[]; }; needy = derive { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive { name="negenes"; version="1.0-1"; sha256="0g8m3idjm24cf9b1wngw2pv1axgnv9mk5wqs78zgwvn0m67ypsiz"; depends=[]; }; neldermead = derive { name="neldermead"; version="1.0-10"; sha256="1snavf90yb12sydic7br749njbnfr0k7kk20fy677mg648sf73di"; depends=[optimbase optimsimplex]; }; -neotoma = derive { name="neotoma"; version="1.2-0"; sha256="0mb7b4qncn63nppq3hxl3a6hgipb413rygsm9qhira61ysnay51m"; depends=[RJSONIO RCurl plyr reshape2]; }; +neotoma = derive { name="neotoma"; version="1.3.0"; sha256="0a5fmas441zl479vfndgyhanp5iivzdp5zqrpnr3pvgf3wfdnppd"; depends=[plyr RCurl reshape2 RJSONIO]; }; nephro = derive { name="nephro"; version="1.1"; sha256="06lxkk67n5whgc78vrr7gxvnrz38pxlsj4plj02zv9fwlzbb9h6p"; depends=[]; }; -nestedRanksTest = derive { name="nestedRanksTest"; version="0.1"; sha256="12pqxldyzy2i2gc575rx67zdfb8c9j0fv400nw509cwx5w6ya35x"; depends=[]; }; -netClass = derive { name="netClass"; version="1.2.1"; sha256="04yrj71l5p83rpwd0iaxdkhm49z9qp3h6b7rp9cgav244q060m9y"; depends=[kernlab Matrix ROCR igraph samr]; }; +nestedRanksTest = derive { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; }; +netClass = derive { name="netClass"; version="1.2.1"; sha256="04yrj71l5p83rpwd0iaxdkhm49z9qp3h6b7rp9cgav244q060m9y"; depends=[AnnotationDbi graph igraph kernlab Matrix ROCR samr]; }; netassoc = derive { name="netassoc"; version="0.4.3"; sha256="153zgnmk9qjcxhfdy9g1fkgjx0vpyv55gmj4spk664igvw6kicf3"; depends=[igraph]; }; -netgen = derive { name="netgen"; version="1.0"; sha256="01j5s80k658wcp8ml2kyf10dvajp4crrxcad65rs03grak1q5mkv"; depends=[BBmisc mvtnorm lhs ggplot2 lpSolve checkmate]; }; -netgsa = derive { name="netgsa"; version="2.0"; sha256="04id2wcrmi0lqvn4a8qhqkc3z076b8xd7jhw9hsmaz21g9cxdfx8"; depends=[cvTools corpcor glasso glmnet igraph]; }; -netmeta = derive { name="netmeta"; version="0.7-0"; sha256="0nsy817bj3fh4sz632pljyjn7jphg9w389hhdcyjvkb7i43c9v5c"; depends=[meta magic]; }; +netgen = derive { name="netgen"; version="1.1"; sha256="0wbsssskhih6fyb0xfpnd3sjp25z8h0jyy3437ykgh7g24hh0i1z"; depends=[BBmisc checkmate ggplot2 igraph lhs lpSolve mvtnorm stringr]; }; +netgsa = derive { name="netgsa"; version="2.0"; sha256="04id2wcrmi0lqvn4a8qhqkc3z076b8xd7jhw9hsmaz21g9cxdfx8"; depends=[corpcor cvTools glasso glmnet igraph]; }; +netmeta = derive { name="netmeta"; version="0.7-0"; sha256="0nsy817bj3fh4sz632pljyjn7jphg9w389hhdcyjvkb7i43c9v5c"; depends=[magic meta]; }; nets = derive { name="nets"; version="0.1"; sha256="0zshiavdi1z8mq6q93vsyb5wx5nq37qln9gcyvamvi2pgy5xg4k2"; depends=[igraph]; }; -nettools = derive { name="nettools"; version="1.0.1"; sha256="13fw316r31g9cjlbyy9qfccsyagxb6pyvn5k32f166b7vj92mk1q"; depends=[rootSolve dtw WGCNA Matrix minerva combinat igraph]; }; -netweavers = derive { name="netweavers"; version="1.1"; sha256="0p8hb3m0lbkf0pw9vdhv94spdba432klpqgn07jvxfhfhmr8cyz0"; depends=[igraph]; }; +nettools = derive { name="nettools"; version="1.0.1"; sha256="13fw316r31g9cjlbyy9qfccsyagxb6pyvn5k32f166b7vj92mk1q"; depends=[combinat dtw igraph Matrix minerva minet rootSolve WGCNA]; }; +netweavers = derive { name="netweavers"; version="1.1"; sha256="0p8hb3m0lbkf0pw9vdhv94spdba432klpqgn07jvxfhfhmr8cyz0"; depends=[Biobase BiocGenerics igraph limma]; }; network = derive { name="network"; version="1.12.0"; sha256="04n634ia6m86zkmjdla8v6j4x11kdrx72gaj4am7iwv1ha14nfks"; depends=[]; }; -networkD3 = derive { name="networkD3"; version="0.1.2.1"; sha256="0xc3qbcb0xvdfvx2vb68rzif72x3zna32wrhz9lg9s7dfkz4xmfm"; depends=[htmlwidgets plyr rjson]; }; -networkDynamic = derive { name="networkDynamic"; version="0.7.1"; sha256="0iv4lyfxmjllxk0cx09gdrg7zf2myf57wd3a2gqymids5gvpsy2d"; depends=[network statnet_common network]; }; -networkDynamicData = derive { name="networkDynamicData"; version="0.1.0"; sha256="1vln4n8jldqi1a6qb9j9aaxyjb8pfgwd8brnsqr8hp9lm3axd24b"; depends=[networkDynamic network]; }; +networkD3 = derive { name="networkD3"; version="0.1.7"; sha256="08jazv4mf2h4jdwrlpjr6k1dfcj99rs3nabgqw7x8pi3zb9l6m99"; depends=[htmlwidgets plyr rjson]; }; +networkDynamic = derive { name="networkDynamic"; version="0.7.1"; sha256="0iv4lyfxmjllxk0cx09gdrg7zf2myf57wd3a2gqymids5gvpsy2d"; depends=[network statnet_common]; }; +networkDynamicData = derive { name="networkDynamicData"; version="0.1.0"; sha256="1vln4n8jldqi1a6qb9j9aaxyjb8pfgwd8brnsqr8hp9lm3axd24b"; depends=[network networkDynamic]; }; networkTomography = derive { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; }; networkreporting = derive { name="networkreporting"; version="0.0.1"; sha256="1vfvx5gf90p31gy6kcv7l2ibzbfl382gffa79dl8gascbsg6s8z8"; depends=[functional ggplot2 plyr reshape2 stringr]; }; networksis = derive { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; }; @@ -4762,19 +4868,19 @@ neuRosim = derive { name="neuRosim"; version="0.2-12"; sha256="1hsnw9xipdr74fydq neural = derive { name="neural"; version="1.4.2.2"; sha256="05hrqgppgwp38rdzw86naglxj0bz3wqv04akq7f0jxbbjc6kwy4j"; depends=[]; }; neuralnet = derive { name="neuralnet"; version="1.32"; sha256="0p9r5j8q0flv15wn5s6qi9if7npna107l1ffv37nzx1b4vgswnl9"; depends=[MASS]; }; neuroblastoma = derive { name="neuroblastoma"; version="1.0"; sha256="0hs87fvwaq53xxbh2dw3hjsmf1zkyqli9qyacxf72fnkyhhl8b45"; depends=[]; }; -neuroim = derive { name="neuroim"; version="0.0.3"; sha256="0n5jkyvdaiigv51s5bb508w5xkh0qkd1zbs67nnms14s1664fhiz"; depends=[stringr hash iterators abind Matrix yaImpute]; }; +neuroim = derive { name="neuroim"; version="0.0.3"; sha256="0n5jkyvdaiigv51s5bb508w5xkh0qkd1zbs67nnms14s1664fhiz"; depends=[abind hash iterators Matrix stringr yaImpute]; }; ngram = derive { name="ngram"; version="1.1"; sha256="0p5wm55anch1i0y3478f5d4sivs7q8j3kwlg89nk3337win06499"; depends=[]; }; -ngramr = derive { name="ngramr"; version="1.4.5"; sha256="1cqapla0lknxl669w5x3av9nr4vy9qrfznznqj22xlqaj0p53c18"; depends=[httr RCurl plyr rjson stringr reshape2 ggplot2 scales]; }; +ngramr = derive { name="ngramr"; version="1.4.5"; sha256="1cqapla0lknxl669w5x3av9nr4vy9qrfznznqj22xlqaj0p53c18"; depends=[ggplot2 httr plyr RCurl reshape2 rjson scales stringr]; }; ngramrr = derive { name="ngramrr"; version="0.1.1"; sha256="1h12nm0dg2mkq5b2zn12cij24nl8inqn04m4jxdi1lr6r81y1wsq"; depends=[tau]; }; -ngspatial = derive { name="ngspatial"; version="1.0-5"; sha256="0dd7gm6irq08054ndj2gykz4nnfqfq3wbivg6fmlkdnn18kbckkk"; depends=[Rcpp batchmeans Rcpp RcppArmadillo]; }; -nhlscrapr = derive { name="nhlscrapr"; version="1.8"; sha256="0y2shw3g84flh88a15czdsb62xwdqxhvzkn4kpbn0k9ddyfzxc48"; depends=[RCurl rjson biglm bitops]; }; +ngspatial = derive { name="ngspatial"; version="1.0-5"; sha256="0dd7gm6irq08054ndj2gykz4nnfqfq3wbivg6fmlkdnn18kbckkk"; depends=[batchmeans Rcpp RcppArmadillo]; }; +nhlscrapr = derive { name="nhlscrapr"; version="1.8"; sha256="0y2shw3g84flh88a15czdsb62xwdqxhvzkn4kpbn0k9ddyfzxc48"; depends=[biglm bitops RCurl rjson]; }; nice = derive { name="nice"; version="0.4"; sha256="1alq8n8pchn9v0fvwrifdisazkh519x109bqgnpgnwf79wblmnhy"; depends=[]; }; nicheROVER = derive { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; nlADG = derive { name="nlADG"; version="0.1-0"; sha256="0nvd5hzd1p81jwx5p7js86wblgg615vdnpbvy5rhmhf1ig583z1b"; depends=[ggm]; }; -nlWaldTest = derive { name="nlWaldTest"; version="1.0.1"; sha256="1rwpkkddivpcamhsp22nmy5gz2006y9kbdzj8lhh20s1vsyhn2b3"; depends=[stringr numDeriv]; }; -nleqslv = derive { name="nleqslv"; version="2.7"; sha256="1livdnwrs8vzsbhvjqf3rmnanaywsr464jb6988s6pmyc2b0q9zp"; depends=[]; }; +nlWaldTest = derive { name="nlWaldTest"; version="1.0.1"; sha256="1rwpkkddivpcamhsp22nmy5gz2006y9kbdzj8lhh20s1vsyhn2b3"; depends=[numDeriv stringr]; }; +nleqslv = derive { name="nleqslv"; version="2.8"; sha256="1jkf02mcz16d8h8b7h5m13lpx6z2shpap5vncapszwa9js6vps67"; depends=[]; }; nlme = derive { name="nlme"; version="3.1-120"; sha256="1ji8nrf714nf18by9g7k4czkgnj1cq464pvjv195c5fnhwhmpmjc"; depends=[lattice]; }; -nlmeODE = derive { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve nlme lattice]; }; +nlmeODE = derive { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; nlmrt = derive { name="nlmrt"; version="2013-9.25"; sha256="0z2ih61rpqzk64qagiwbx396vwb28jhqk8b4kxchca0il3fzqqav"; depends=[]; }; nloptr = derive { name="nloptr"; version="1.0.4"; sha256="1cypz91z28vhvwq2rzqjrbdc6a2lvfr2g16vid2sax618q6ai089"; depends=[]; }; @@ -4784,21 +4890,22 @@ nlsMicrobio = derive { name="nlsMicrobio"; version="0.0-1"; sha256="0676n78265z0 nlsem = derive { name="nlsem"; version="0.3"; sha256="1lpp6f6nby1rzxv7hrqnm4qbwj406g9ls9jmidb8rqgy177sk4w6"; depends=[gaussquad mvtnorm nlme]; }; nlsmsn = derive { name="nlsmsn"; version="0.0-4"; sha256="1gvpy8rq020l64bdw6n7kv354l7gwa2rgxarm6k0mqq7z21fxf58"; depends=[]; }; nlstools = derive { name="nlstools"; version="1.0-1"; sha256="00m2x587gvrbgs7wdkz2n54ylp0rnrs76rb6xmi3pf9xlbmnplr2"; depends=[]; }; -nlt = derive { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[EbayesThresh adlift]; }; -nlts = derive { name="nlts"; version="0.2-0"; sha256="14kvzc1p4anj9f7pg005pcbmc4k0917r49pvqys9a0a51ira67vb"; depends=[locfit acepack]; }; +nlt = derive { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; }; +nlts = derive { name="nlts"; version="0.2-0"; sha256="14kvzc1p4anj9f7pg005pcbmc4k0917r49pvqys9a0a51ira67vb"; depends=[acepack locfit]; }; nmcdr = derive { name="nmcdr"; version="0.3.0"; sha256="1557pdv7mqdjwpm6d9zw3zfbm1s8ai3rasd66nigscmlq102w745"; depends=[CDFt]; }; nnet = derive { name="nnet"; version="7.3-9"; sha256="1z1lhi35w5l7l645d764w9h4aiv6hapjv8fwb9b51b36vyg1r0zg"; depends=[]; }; nnlasso = derive { name="nnlasso"; version="0.2"; sha256="1q1psc6s5xw2nsz09q20n5rksq07gx21q9ap22dr7haln5jrvpzr"; depends=[]; }; nnls = derive { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; -nodeHarvest = derive { name="nodeHarvest"; version="0.6"; sha256="16151rwmqkf5vlyrlxlirz8s0nimxppx1f7f4pwfxi9vipwph125"; depends=[quadprog randomForest]; }; -nodiv = derive { name="nodiv"; version="1.0.3"; sha256="0fwx7f30qxfnhgzn5lrphwv0clvap3w887xf6316lbr86sjw4x3v"; depends=[picante raster ape sp vegan]; }; +nodeHarvest = derive { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; +nodiv = derive { name="nodiv"; version="1.1.0"; sha256="16c7xm46jnzcsd5gyj72krjyizgyf5mh490x2f4khar65gqzqx04"; depends=[ape picante raster sp vegan]; }; noia = derive { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; +nomclust = derive { name="nomclust"; version="0.91.1010"; sha256="02jpzcjclm22bjg59wj4490vh2rp9ma1vqxdnwmppyb478558fz1"; depends=[cluster dummies]; }; noncensus = derive { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; }; -nonlinearTseries = derive { name="nonlinearTseries"; version="0.2.1"; sha256="1pq93g25arnc68kyvv6ymywdvbqv6620dvqzv1l43c1xssw364bc"; depends=[Matrix rgl tseries TSA]; }; +nonlinearTseries = derive { name="nonlinearTseries"; version="0.2.2"; sha256="1p78a9nqn53v9r885p4lg47vqlryw7335pxrid191xqabxxs3ba7"; depends=[Matrix Rcpp rgl TSA tseries]; }; nonnest2 = derive { name="nonnest2"; version="0.2"; sha256="0z2ihnhphf6c9cklj1l81kqgyz1h9wl2ziwx7s0ssn3dfgw4fnp7"; depends=[CompQuadForm mvtnorm sandwich]; }; -nonparaeff = derive { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[lpSolve gdata Hmisc rms geometry psych pwt]; }; +nonparaeff = derive { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; }; nonrandom = derive { name="nonrandom"; version="1.42"; sha256="0icm23hw593322z41wmjkwxqknh2pa9kpzbrch7xw1mhp93sd5ll"; depends=[lme4]; }; -nontarget = derive { name="nontarget"; version="1.7"; sha256="1hnqkb8bpp89y42gjrfh7m3lxhif9dyhcmr6yfss8x3lzf018gk2"; depends=[enviPat nontargetData mgcv]; }; +nontarget = derive { name="nontarget"; version="1.7"; sha256="1hnqkb8bpp89y42gjrfh7m3lxhif9dyhcmr6yfss8x3lzf018gk2"; depends=[enviPat mgcv nontargetData]; }; nontargetData = derive { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; nopp = derive { name="nopp"; version="1.0.4"; sha256="00wn0pnqpy9xll0aa8ah45ldgk1ziw464x8zkc8iq4l2a22lgn4v"; depends=[mlogit]; }; nor1mix = derive { name="nor1mix"; version="1.2-0"; sha256="1s92bwpwq9p0d06adclm43yqq0k7ifv8lknn1scxg8nj4g03qjhs"; depends=[]; }; @@ -4809,12 +4916,13 @@ normwhn_test = derive { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40 nortest = derive { name="nortest"; version="1.0-3"; sha256="0kih1r703hjw2vha2hx13vm3fvbyra7v229khgv3hxxfppb7jis8"; depends=[]; }; nose = derive { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; notifyR = derive { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; +novelist = derive { name="novelist"; version="1.0"; sha256="0wzx0vkqvl9sfhbbrzylsxhm3qmjj5w8sy5w6gvd104fn84d49yk"; depends=[]; }; noweb = derive { name="noweb"; version="1.0-4"; sha256="17s65m1m8bj286l9m2h54a8j799xaqadwfrml11732f8vyrzb191"; depends=[]; }; np = derive { name="np"; version="0.60-2"; sha256="0zs1d4mmgns7s26qcplf9mlz9rkp6f9mv7abb0b9b2an23y6gmi5"; depends=[boot cubature]; }; npIntFactRep = derive { name="npIntFactRep"; version="1.2"; sha256="0fx5923wdzz6122bbyil5imwbhgwlm50wcrscy78qdx8n4n07rv8"; depends=[ez plyr]; }; nparLD = derive { name="nparLD"; version="2.1"; sha256="1asq00lv1rz3rkz1gqpi7f83p5vhzfib3m7ka1ywpf2wfbfng27n"; depends=[MASS]; }; nparcomp = derive { name="nparcomp"; version="2.6"; sha256="111ypwyc885lvn64a5sb2k552j6wr3iihmhgx5y475axdiva5pzf"; depends=[multcomp mvtnorm]; }; -npbr = derive { name="npbr"; version="1.1"; sha256="011zmz1s6kkdgylkl6dc79dpardgpc5dlh6g6y2l84hgax1rbdl6"; depends=[quadprog Rglpk Benchmarking np]; }; +npbr = derive { name="npbr"; version="1.1"; sha256="011zmz1s6kkdgylkl6dc79dpardgpc5dlh6g6y2l84hgax1rbdl6"; depends=[Benchmarking np quadprog Rglpk]; }; npcp = derive { name="npcp"; version="0.1-1"; sha256="0b2mqx0zrvai5aw6b47qpi4bwcfjrv0bh8ahrgx7n1sf045grm3a"; depends=[]; }; npde = derive { name="npde"; version="2.0"; sha256="1cp4k7jvsw9rc6rrck902nqqjaf2c1nxjic7i9r3fd6yca1lgqb9"; depends=[mclust]; }; nplplot = derive { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; }; @@ -4822,7 +4930,7 @@ nplr = derive { name="nplr"; version="0.1-1"; sha256="0br7flriqbig8frq0j4lxiv6i8 npmlreg = derive { name="npmlreg"; version="0.46-1"; sha256="1gddl6diw8ix8vz7n1r4ps9cjx3q00mafpapskjk7pcz69m6hfv1"; depends=[statmod]; }; npmv = derive { name="npmv"; version="2.2"; sha256="1aqlx1y3bxbqp13q0vajwffj8srb6s04d5r2h08m9fk5hhp9l3jf"; depends=[Formula]; }; nppbib = derive { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; -npsm = derive { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[Rfit plyr]; }; +npsm = derive { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; }; npsp = derive { name="npsp"; version="0.3-6"; sha256="1wiv4gp3y1c26xaq8zssias3j3h8mpb6izcmcarghvnfhj32l8jb"; depends=[quadprog]; }; npst = derive { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; }; nsRFA = derive { name="nsRFA"; version="0.7-12"; sha256="182zshwyg0l6shb5wcwibqygxs8qmgma9c4s683za8q3f9l94aqj"; depends=[]; }; @@ -4830,91 +4938,96 @@ nscancor = derive { name="nscancor"; version="0.6"; sha256="1wkk08h8yz2mzgvmq0vr nsga2R = derive { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; nsgp = derive { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; }; nsprcomp = derive { name="nsprcomp"; version="0.5"; sha256="1rrjiwkpiaqlp27s5xfd6jwmmpzgxm5d7874gp33511wa0vrhnnf"; depends=[]; }; -nullabor = derive { name="nullabor"; version="0.3.1"; sha256="0anwla6x9y2i7yd6r0yi1xhy0zfqwfpp5h1f18gji11nmiva9d81"; depends=[ggplot2 MASS plyr dplyr moments fpc]; }; +nullabor = derive { name="nullabor"; version="0.3.1"; sha256="0anwla6x9y2i7yd6r0yi1xhy0zfqwfpp5h1f18gji11nmiva9d81"; depends=[dplyr fpc ggplot2 MASS moments plyr]; }; numDeriv = derive { name="numDeriv"; version="2014.2-1"; sha256="114wd0hwn2mwlyh84hh3yd2bvcy63f166ihbpnp6xn6fqp019skd"; depends=[]; }; numOSL = derive { name="numOSL"; version="1.8"; sha256="0md55gfxjvdmjy4hy58wp11c788xy7kq9wl32m1r76ja6g03wwbl"; depends=[]; }; numbers = derive { name="numbers"; version="0.5-6"; sha256="17v7by1gvqg2mdm5vrmf05kfrbvc2yz8ldb7bd0lrhcyrm5bbbwa"; depends=[gmp]; }; -nutshell = derive { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_bbdb nutshell_audioscrobbler]; }; +nutshell = derive { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_audioscrobbler nutshell_bbdb]; }; nutshell_audioscrobbler = derive { name="nutshell.audioscrobbler"; version="1.0"; sha256="10fvc5d22gnfb0bkgbww48f0vvcaja96g5gfv85kap939j11172j"; depends=[]; }; nutshell_bbdb = derive { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; }; nws = derive { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; }; nycflights13 = derive { name="nycflights13"; version="0.1"; sha256="15bqaphxwqpdzr4bkn6qgbjb3knja5hk34qxjd6xhpjzkgfs5c0b"; depends=[]; }; oaxaca = derive { name="oaxaca"; version="0.1.2"; sha256="1ghdrpjp2p4nlwskvs8n8d8ixzf3cdq9k9q49zvq8ag0dhwyswzd"; depends=[Formula ggplot2 reshape2]; }; -objectProperties = derive { name="objectProperties"; version="0.6.5"; sha256="0wn19byb1ia5gsfmdi6cj05pnlxbr3zcrjabjg3g1d7b58nz7wlh"; depends=[objectSignals objectSignals]; }; +objectProperties = derive { name="objectProperties"; version="0.6.5"; sha256="0wn19byb1ia5gsfmdi6cj05pnlxbr3zcrjabjg3g1d7b58nz7wlh"; depends=[objectSignals]; }; objectSignals = derive { name="objectSignals"; version="0.10.2"; sha256="1rcgfq1i3nz2q93vv4l069f3mli1c6fd5dhhhw1p7cc4sy81008w"; depends=[]; }; obliclus = derive { name="obliclus"; version="0.9"; sha256="000r1dx4zbgjxrfs66c1yazm0w6q2z0z1scf45g2qj5ykcm9ylma"; depends=[]; }; -oblique_tree = derive { name="oblique.tree"; version="1.1.1"; sha256="01vyc46gz7qx8fc5bg3zbhjyhnmfgjii120a915vmr38cs51qhqh"; depends=[tree glmnet nnet]; }; -obliqueRF = derive { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[ROCR pls mda e1071]; }; +oblique_tree = derive { name="oblique.tree"; version="1.1.1"; sha256="01vyc46gz7qx8fc5bg3zbhjyhnmfgjii120a915vmr38cs51qhqh"; depends=[glmnet nnet tree]; }; +obliqueRF = derive { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; }; obs_agree = derive { name="obs.agree"; version="1.0"; sha256="191xshnrncjqzwd2rdq334vsx0338q3y3k1nbm04hdaysbnla9jv"; depends=[]; }; obsSens = derive { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; oc = derive { name="oc"; version="0.95"; sha256="1zmy34fsqcd4rq0v72r514k6gm3jmf9a5zv4m6kj09hl89xvqsci"; depends=[pscl]; }; occ = derive { name="occ"; version="1.0"; sha256="1rpgq6mqrdzz52ln897f5k8yyz5i14s3lxqmy3nwsxf3q2bdf3yh"; depends=[]; }; -oce = derive { name="oce"; version="0.9-14"; sha256="03vp83504pwjk6wbx5l4s31qvxfyd3g38snvfvp8b0pvnlv8f2fh"; depends=[mapproj]; }; +oce = derive { name="oce"; version="0.9-17"; sha256="0j1sj9qlcg0yrdhpqinrpaa8dv4d8c8hjl48028x75frsc784pip"; depends=[gsw]; }; ocean = derive { name="ocean"; version="0.2-4"; sha256="1554iixfbw3k6w9xh3hgbiygszqvj5ci431cfmnx48jm27h2alqg"; depends=[ncdf4 proj4]; }; -ocedata = derive { name="ocedata"; version="0.1.2"; sha256="0kic6m09a66zc5fxh9fkqk7rp3mnpf0p6i1qy2irh3bj9ccmdkvk"; depends=[]; }; +ocedata = derive { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; +odds_converter = derive { name="odds.converter"; version="1.1"; sha256="0x57hrb54pvk1prxl87yz3mwvxf3fxranzg706vdiwkcnjc4damm"; depends=[]; }; +odeintr = derive { name="odeintr"; version="1.3"; sha256="12y5hr6f7bj3aqj4gd0hlj495c5163jn0liksspk5jpqcmpsgdg3"; depends=[BH Rcpp]; }; odfWeave = derive { name="odfWeave"; version="0.8.4"; sha256="1rp9j3snkkp0fqmkr6h6pxqd4cxkdfajgh4vlhpz56gr2l9j48q5"; depends=[lattice XML]; }; odfWeave_survey = derive { name="odfWeave.survey"; version="1.0"; sha256="0cz7dxh1x4aflvfrdzhi5j64ma5s19ma8fk9q2m086j11a1dw3jn"; depends=[odfWeave survey]; }; -oem = derive { name="oem"; version="1.02.1"; sha256="0z9k0jhpp5dayyin6v8p26rgl8s983hnpsk195c9z458i7nbmrpd"; depends=[Rcpp Rcpp RcppArmadillo]; }; +oem = derive { name="oem"; version="1.02.1"; sha256="0z9k0jhpp5dayyin6v8p26rgl8s983hnpsk195c9z458i7nbmrpd"; depends=[Rcpp RcppArmadillo]; }; +oglmx = derive { name="oglmx"; version="1.0.2"; sha256="1yln1ysk19mxnb0aq74xgqj0qqipqg3qbczyhdygakjd4v4ndvhg"; depends=[maxLik]; }; okmesonet = derive { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; omd = derive { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; oncomodel = derive { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; onemap = derive { name="onemap"; version="2.0-4"; sha256="00xmhm5qy0ycw0mnlyl20vfw0wxmpb36f07k0jj92c4zbpwjiygx"; depends=[tkrplot]; }; onion = derive { name="onion"; version="1.2-4"; sha256="0x3n9mwknxjwhpdg8an0ilix5cb8dyy5fqnb6nxx7ww885k0381a"; depends=[]; }; -onlinePCA = derive { name="onlinePCA"; version="1.0-1"; sha256="0gca0ijcc30b3z5i390n1yk6c7sc15z8d0zpxpfb3hh99g7vinx4"; depends=[rARPACK Rcpp Rcpp RcppArmadillo]; }; +onlinePCA = derive { name="onlinePCA"; version="1.0-1"; sha256="0gca0ijcc30b3z5i390n1yk6c7sc15z8d0zpxpfb3hh99g7vinx4"; depends=[rARPACK Rcpp RcppArmadillo]; }; onls = derive { name="onls"; version="0.1-0"; sha256="1kfgikswddly9lar6wa1hhz89rap0pql9h181s7i68wa20xdg05z"; depends=[minpack_lm]; }; opefimor = derive { name="opefimor"; version="1.1"; sha256="0xv57l38wx3w67h312g5xcpi9m7ggd6crqvqjh5gddq0g1g93bjq"; depends=[]; }; openNLP = derive { name="openNLP"; version="0.2-5"; sha256="0jc4ii6zsj0pf6nlx3l0db18p6whp047gzvc7q0dbwpa8q4il2mb"; depends=[NLP openNLPdata rJava]; }; openNLPdata = derive { name="openNLPdata"; version="1.5.3-1"; sha256="1a048irgv56yi2lvhpqh8vh4dl7g7zfg934qypjxg8mcdcqi820y"; depends=[rJava]; }; -openair = derive { name="openair"; version="1.5"; sha256="0swhaldfhz6zgs50aws18kypilv15k7w99nqcmb7y0wgvkkwda2h"; depends=[lazyeval dplyr maps plyr reshape2 mgcv lattice latticeExtra cluster RColorBrewer mapproj hexbin mapdata RgoogleMaps Rcpp Rcpp]; }; -opencpu = derive { name="opencpu"; version="1.4.6"; sha256="19anprhkwqw2kii417qy3laalrlj207zfvklc05m0vz9sra7sxj0"; depends=[evaluate httpuv knitr jsonlite devtools httr brew openssl]; }; +openair = derive { name="openair"; version="1.5"; sha256="0swhaldfhz6zgs50aws18kypilv15k7w99nqcmb7y0wgvkkwda2h"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval mapdata mapproj maps mgcv plyr RColorBrewer Rcpp reshape2 RgoogleMaps]; }; +opencpu = derive { name="opencpu"; version="1.4.6"; sha256="19anprhkwqw2kii417qy3laalrlj207zfvklc05m0vz9sra7sxj0"; depends=[brew devtools evaluate httpuv httr jsonlite knitr openssl]; }; openintro = derive { name="openintro"; version="1.4"; sha256="1k6pzlsrqikbri795vic9h191nf2j7v7hjybjfkrx6847c1r4iam"; depends=[]; }; openssl = derive { name="openssl"; version="0.4"; sha256="1gfhzxjjssid2z8xmw3vnnd4gj2f6a3zzazkhpg9b1ymmcp9b288"; depends=[]; }; -opentraj = derive { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[plyr maptools openair raster rgdal reshape doParallel foreach sp]; }; -openxlsx = derive { name="openxlsx"; version="2.4.0"; sha256="1jzq3lz9qivsprmn8aibwiidcwsanlnfpmsz2ccw3650gdgk3zdk"; depends=[Rcpp Rcpp]; }; -operator_tools = derive { name="operator.tools"; version="1.3.0"; sha256="0y5f0ifj4gaq03gm44vdvslcs7lglk1p8kq47mdc0gc1yfa6l00c"; depends=[]; }; +opentraj = derive { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; +openxlsx = derive { name="openxlsx"; version="2.4.0"; sha256="1jzq3lz9qivsprmn8aibwiidcwsanlnfpmsz2ccw3650gdgk3zdk"; depends=[Rcpp]; }; +operator_tools = derive { name="operator.tools"; version="1.4.4"; sha256="1ridxi3pbylb4flfgn371n1v9796rnd1ndxhh6ijyzpysqqmwi08"; depends=[]; }; operators = derive { name="operators"; version="0.1-7"; sha256="1qik9ihv5blz77bzsnrslf665ndpa8vp3xldqsgvs4gr5bg5algw"; depends=[]; }; ops = derive { name="ops"; version="1.0"; sha256="0cvwyn5sz5lx8sin8w4k8ymslfl4nfaa012a9vcl2hvp4850rk25"; depends=[]; }; optAUC = derive { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; }; -optBiomarker = derive { name="optBiomarker"; version="1.0-27"; sha256="1kkj602d4klwyd8kylawgfysg8dlp2g6j7afkppzv5x8mbhs5ji4"; depends=[rpanel rgl MASS randomForest e1071 ipred msm Matrix]; }; +optBiomarker = derive { name="optBiomarker"; version="1.0-27"; sha256="1kkj602d4klwyd8kylawgfysg8dlp2g6j7afkppzv5x8mbhs5ji4"; depends=[e1071 ipred MASS Matrix msm randomForest rgl rpanel]; }; +optCluster = derive { name="optCluster"; version="1.0.0"; sha256="1qpymgdy4pcl5isz88m2bb734c2c2qlh77c0i8c1wy4hkrx5ndpl"; depends=[cluster clValid gplots kohonen MBCluster_Seq mclust RankAggreg]; }; optR = derive { name="optR"; version="1.1.1"; sha256="1lr5n0g21jayb27b2j8zh16f1k28avzg7k2mwyc7rjhhxv8k9w1j"; depends=[]; }; optextras = derive { name="optextras"; version="2013-10.28"; sha256="1sm025xwrpm5c63l4kiqfndxb7rwq2bcmidy4k2b24g5a8x7cpfv"; depends=[numDeriv]; }; -optiRum = derive { name="optiRum"; version="0.35"; sha256="0hfby5791jmzpacd8a4jj45b6sr5fph9g24kv6sr9db35y07ca36"; depends=[data_table ggplot2 AUC knitr plyr scales stringr XML]; }; +optiRum = derive { name="optiRum"; version="0.35"; sha256="0hfby5791jmzpacd8a4jj45b6sr5fph9g24kv6sr9db35y07ca36"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; optifunset = derive { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; optimbase = derive { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5bl3s3az1pcyhsz0cza5f8vdksy5gchwqplm8n"; depends=[Matrix]; }; optimsimplex = derive { name="optimsimplex"; version="1.0-5"; sha256="1aiq0w2zlra3k6x4hf2rglb6bj8w25yc8djnpgm508kkrbv3cc17"; depends=[optimbase]; }; -optimx = derive { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[numDeriv ucminf BB Rcgmin Rvmmin minqa setRNG dfoptim svUnit]; }; +optimx = derive { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[BB dfoptim minqa numDeriv Rcgmin Rvmmin setRNG svUnit ucminf]; }; optiscale = derive { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; }; optmatch = derive { name="optmatch"; version="0.9-3"; sha256="16mhrhdpyqrj1g24mwc3fl0qyqq1kna8z6cj239fpbjhqb1mirjb"; depends=[digest]; }; optparse = derive { name="optparse"; version="1.3.0"; sha256="02sy28imvssr49pngdbg9qbx1h1fyjl11j7nql55m10a7cdzhwd4"; depends=[getopt]; }; optpart = derive { name="optpart"; version="2.1-1"; sha256="0m2nsrynqbw9sj7cp7c37grx9g20dld2f26g0xzbj16wz7whgp02"; depends=[cluster labdsv MASS plotrix]; }; optrees = derive { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; -orQA = derive { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[Rcpp gtools nlme Rcpp]; }; +orQA = derive { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; ora = derive { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; orca = derive { name="orca"; version="1.1"; sha256="138qqjklwd3g4dfg9j2438kzpsdc7sf8qdl8ha4kd276n71vkfrh"; depends=[]; }; orclus = derive { name="orclus"; version="0.2-5"; sha256="0kkxhyqjxib862npinzf3mipqg5imgscdmb5wqm8wf2j2mbislsx"; depends=[]; }; orcutt = derive { name="orcutt"; version="1.1"; sha256="0hz7aw4jpf4l7ihj4bjnjv1m8ynr71n4l12x046qj8y7mrnl9p4k"; depends=[]; }; -ordBTL = derive { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret VGAM wikibooks gtools]; }; -ordPens = derive { name="ordPens"; version="0.2-1"; sha256="1kcxjfr2ncnqg293ph509hpgzzn5s4ih2kd8agl335zlxcksz3fp"; depends=[grplasso mgcv RLRsim]; }; +ordBTL = derive { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret gtools VGAM wikibooks]; }; +ordPens = derive { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr0wkdvj3sy9n3wc86bf4bjbavniq6m69r"; depends=[grplasso mgcv RLRsim]; }; orddom = derive { name="orddom"; version="3.1"; sha256="165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh"; depends=[psych]; }; -orderbook = derive { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[lattice hash]; }; -orderedLasso = derive { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[Matrix Iso quadprog ggplot2 reshape2]; }; -ordinal = derive { name="ordinal"; version="2015.1-21"; sha256="1vhkxdsapmah09vzy6xd00kb1ck02vbiyamv5ccflxdbdmch1q1y"; depends=[ucminf MASS Matrix]; }; +orderbook = derive { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; }; +orderedLasso = derive { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[ggplot2 Iso Matrix quadprog reshape2]; }; +ordinal = derive { name="ordinal"; version="2015.1-21"; sha256="1vhkxdsapmah09vzy6xd00kb1ck02vbiyamv5ccflxdbdmch1q1y"; depends=[MASS Matrix ucminf]; }; +ordinalCont = derive { name="ordinalCont"; version="0.4"; sha256="1inms74l4zx6r526xd0v79v18bcqa76xwsgfvap0fizyv2dvgpim"; depends=[boot fastGHQuad ucminf]; }; ordinalgmifs = derive { name="ordinalgmifs"; version="1.0.2"; sha256="1rbn2mb516hdr0chny1849m1aq0vb0vmr636b4fp914l5zh75vgi"; depends=[]; }; ore = derive { name="ore"; version="1.1.0"; sha256="1khgjd5fl8vi9n9pj4nbai6fbfbiwzc121a0gf7dfk727iid8whq"; depends=[]; }; -orgR = derive { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[ggthemes ggplot2 lubridate data_table stringr]; }; +orgR = derive { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; orientlib = derive { name="orientlib"; version="0.10.3"; sha256="1qi46hkz73b8722zc3w6wvsq1ydlk37yxn9rd1dqygqbs1svkmvv"; depends=[]; }; orloca = derive { name="orloca"; version="4.2"; sha256="14accc5kcvvin5qav6g3rx10by00r0b8970nd09w4c09nhwyblcd"; depends=[]; }; orloca_es = derive { name="orloca.es"; version="4.1"; sha256="0nzhg7vzfxlmryw5ijww8z2b1g9cmgcgzi3gsgigsgn4shnc2hni"; depends=[orloca]; }; oro_dicom = derive { name="oro.dicom"; version="0.5.0"; sha256="05dmhfglp76apyilwicf3n2ylyjhp1gq6b9bnzsiiblpjnfpia43"; depends=[oro_nifti]; }; -oro_nifti = derive { name="oro.nifti"; version="0.5.2"; sha256="0zf5lb51b81602lwg118x3j2myrbrm6wjaflbpxxzqigz4q60rkg"; depends=[bitops abind]; }; +oro_nifti = derive { name="oro.nifti"; version="0.5.2"; sha256="0zf5lb51b81602lwg118x3j2myrbrm6wjaflbpxxzqigz4q60rkg"; depends=[abind bitops]; }; oro_pet = derive { name="oro.pet"; version="0.2.3"; sha256="06agl6rvd01h6mnilj0vl52dxw6b7b41vl6vmbvaq5qy1wmiaiz7"; depends=[oro_dicom oro_nifti]; }; orsk = derive { name="orsk"; version="1.0-1"; sha256="155wc9sfla3717b6xmhmsmvsnh2qbzzkffhibmj4xc0pd9lwwz2v"; depends=[BB BHH2]; }; orthogonalsplinebasis = derive { name="orthogonalsplinebasis"; version="0.1.6"; sha256="07rbd0fhs2gsk7wj41y2h7wf6pfg324vzv2al753d8kqyx5ns2dj"; depends=[]; }; orthopolynom = derive { name="orthopolynom"; version="1.0-5"; sha256="1gvhqx6jlh06hjmkmbsl83gri0gncrm3rkliyzyzmj75m8vz993d"; depends=[polynom]; }; osDesign = derive { name="osDesign"; version="1.7"; sha256="0y68pnsmq4nlmfsn28306q2kxab200pirr6ha0w4himzpnw1sil3"; depends=[]; }; -osmar = derive { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[XML RCurl geosphere]; }; +osmar = derive { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; ouch = derive { name="ouch"; version="2.8-4"; sha256="1kx6qjvc8zlcxihqfxs288hwwh9m05s5544w4c6m1wc02083b735"; depends=[subplex]; }; -outbreaker = derive { name="outbreaker"; version="1.1-5"; sha256="1k39pzqbjah4dwwjyaccb13c1aww8i4kdfjanxc4hzkl8av7s8db"; depends=[ape igraph adegenet]; }; +outbreaker = derive { name="outbreaker"; version="1.1-5"; sha256="1k39pzqbjah4dwwjyaccb13c1aww8i4kdfjanxc4hzkl8av7s8db"; depends=[adegenet ape igraph]; }; outliers = derive { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; overlap = derive { name="overlap"; version="0.2.4"; sha256="1pp3fggkbhif52i5lpihy7syhq2qp56mjvsxgbgwlcfbzy27ph1c"; depends=[]; }; oz = derive { name="oz"; version="1.0-20"; sha256="1d420606ldyw2rhl8dh5hpscvjx6vanbq0hrg81m7b6v0q5rkfri"; depends=[]; }; @@ -4922,8 +5035,8 @@ p2distance = derive { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kj p3state_msm = derive { name="p3state.msm"; version="1.3"; sha256="0gbrka62ylxx64r3abpk60y92k2lk5smlf8na68qazph8llsl2rv"; depends=[survival]; }; pBrackets = derive { name="pBrackets"; version="1.0"; sha256="0cwv609hzp8anfv3cgfbspz8w0g1ljfz05wm4xfhwy15v32fckrj"; depends=[]; }; pGLS = derive { name="pGLS"; version="0.0-1"; sha256="1rlk8q09sikf4vpzsx0c7s6qqh2hxf8dy2bgcm4nnkbv2nfjz438"; depends=[MASS]; }; -pRF = derive { name="pRF"; version="1.0"; sha256="17m86l29ys4n6z4ndibwy7yz9shyp7nf9hjnbgbvmc0ycf1may6i"; depends=[dplyr ggplot2 permute randomForest reshape2 magrittr]; }; -pROC = derive { name="pROC"; version="1.8"; sha256="0rva08hnaah9qv6hapzgfsdy2g06fdvnjmw0l733wm5j2g44ps8m"; depends=[plyr Rcpp Rcpp]; }; +pRF = derive { name="pRF"; version="1.0"; sha256="17m86l29ys4n6z4ndibwy7yz9shyp7nf9hjnbgbvmc0ycf1may6i"; depends=[dplyr ggplot2 magrittr multtest permute randomForest reshape2]; }; +pROC = derive { name="pROC"; version="1.8"; sha256="0rva08hnaah9qv6hapzgfsdy2g06fdvnjmw0l733wm5j2g44ps8m"; depends=[plyr Rcpp]; }; pRSR = derive { name="pRSR"; version="3.0.2"; sha256="1s81mi172mwxhp786c1fl579cg87valppr0z958ssvxsvg5hbfxy"; depends=[]; }; pSI = derive { name="pSI"; version="1.1"; sha256="0cvw38dqqlyx7cpl27hq33f5xns2d0019lyr98pwndcnbp09mx0b"; depends=[gdata]; }; pa = derive { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; @@ -4931,247 +5044,254 @@ pacbpred = derive { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idx pack = derive { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; packClassic = derive { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; }; packHV = derive { name="packHV"; version="1.8"; sha256="0dr2picjd7mm633vw29524f3n4jpyillpzi9cg7yc2cymxnrgvyg"; depends=[survival WriteXLS]; }; -packS4 = derive { name="packS4"; version="0.9.1"; sha256="01kkw5g3xcn9hhfglmfvwsryid0w4vw9azh6as8l8d5i1xjyp9k7"; depends=[]; }; +packS4 = derive { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; packdep = derive { name="packdep"; version="0.3.1"; sha256="1827h9xcvgdad9nwz9k3hi79jc33yr7dnxy4xn2frp3fdh4q81ll"; depends=[igraph]; }; -packrat = derive { name="packrat"; version="0.4.3"; sha256="0sfv7vl9afvv2rpqk39hbrvhq6z54ilqjrff4j3parsfqvg7gaqf"; depends=[]; }; +packrat = derive { name="packrat"; version="0.4.4"; sha256="1yxcj9jc1cswimirnxxzir1ac0xva57w57365k8406a8dwx1v650"; depends=[]; }; pacman = derive { name="pacman"; version="0.3.0"; sha256="10fjkr4zjcx7cyfmnpdnb96swxizhdqhvzgb5crymrafxqvg00c7"; depends=[devtools]; }; paf = derive { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; pairedCI = derive { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; pairheatmap = derive { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; }; pairsD3 = derive { name="pairsD3"; version="0.1.0"; sha256="0ql6pqijf24pfyid52hmf5fmh4w1ca3sm47z9vknqpnjbn47v8q2"; depends=[htmlwidgets shiny]; }; pairwise = derive { name="pairwise"; version="0.2.5"; sha256="0r08v95f6f2safi6c0x84v5gib5qnkv46dmi97rdb9l2xzly249b"; depends=[]; }; -pairwiseCI = derive { name="pairwiseCI"; version="0.1-22"; sha256="1lgir9gcikx8c9pd2wdsqnik9rwr4qkymcf4ndp8s491vj6cm6sa"; depends=[MCPAN coin boot mratios binMto MASS]; }; -palaeoSig = derive { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[vegan TeachingDemos rioja mgcv MASS]; }; -paleoMAS = derive { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[MASS vegan lattice]; }; +pairwiseCI = derive { name="pairwiseCI"; version="0.1-22"; sha256="1lgir9gcikx8c9pd2wdsqnik9rwr4qkymcf4ndp8s491vj6cm6sa"; depends=[binMto boot coin MASS MCPAN mratios]; }; +palaeoSig = derive { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[MASS mgcv rioja TeachingDemos vegan]; }; +paleoMAS = derive { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; paleoTS = derive { name="paleoTS"; version="0.4-4"; sha256="19acfq5z42blk6ya7sj3sprddlgvhrzb9zqpvpy4q8siqkxxrjah"; depends=[mvtnorm]; }; -paleobioDB = derive { name="paleobioDB"; version="0.3"; sha256="1vcfssi6w0m2wd2smyjxp1zf0y48y95386kkb8qdndqw99g089w8"; depends=[raster maps rjson gtools RCurl plyr scales]; }; -paleofire = derive { name="paleofire"; version="1.1.6"; sha256="1fzmnc4ywhqb6sr3cclsqy6y9v27j69bxszlrrgbnqb0kyg28rd7"; depends=[GCD locfit raster ggplot2 plyr rgdal lattice]; }; +paleobioDB = derive { name="paleobioDB"; version="0.3"; sha256="1vcfssi6w0m2wd2smyjxp1zf0y48y95386kkb8qdndqw99g089w8"; depends=[gtools maps plyr raster RCurl rjson scales]; }; +paleofire = derive { name="paleofire"; version="1.1.6"; sha256="1fzmnc4ywhqb6sr3cclsqy6y9v27j69bxszlrrgbnqb0kyg28rd7"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; paleotree = derive { name="paleotree"; version="2.4"; sha256="1rrsxll5qcvr9a96wg5bdljvyy7zy26zd9f0b17xswmp77gxmahb"; depends=[ape phangorn]; }; palinsol = derive { name="palinsol"; version="0.92"; sha256="1jxy3qx8w1r8jwgdavf37gqjjqpizdqk218xcc7b77xi8w52vxpg"; depends=[gsl]; }; -pamctdp = derive { name="pamctdp"; version="0.3.1"; sha256="1fnadgfd2ikis49j9zl2ijj8gim8lpbygwxjj6ri9jyrc1qmj9jb"; depends=[ade4 xtable FactoClass]; }; -pamm = derive { name="pamm"; version="0.7"; sha256="02py4zcymmwnlpsvha5cgc4ik8fp0gbsg86s5q7z5fl3ma3g669j"; depends=[lme4 mvtnorm gmodels]; }; +palr = derive { name="palr"; version="0.0-4"; sha256="0rcb01lpi8zapnml1spx4ixxwbq9qh42sisqzrg7gxrkcjrbqxgl"; depends=[]; }; +pamctdp = derive { name="pamctdp"; version="0.3.1"; sha256="1fnadgfd2ikis49j9zl2ijj8gim8lpbygwxjj6ri9jyrc1qmj9jb"; depends=[ade4 FactoClass xtable]; }; +pamm = derive { name="pamm"; version="0.7"; sha256="02py4zcymmwnlpsvha5cgc4ik8fp0gbsg86s5q7z5fl3ma3g669j"; depends=[gmodels lme4 mvtnorm]; }; pampe = derive { name="pampe"; version="1.1.1"; sha256="1ha4jbmi2j35i375ziv4rbs4rijlp6fxwvb0vfr2905d1vl3cbap"; depends=[leaps]; }; pamr = derive { name="pamr"; version="1.55"; sha256="1hy3khb0gikdr3vpjz0s245m5zang1vq8k93g7n9fq3sjfa034gd"; depends=[cluster survival]; }; pan = derive { name="pan"; version="1.3"; sha256="08g0arwwkj9smkzyh6aicfrqvknag3n2xl55f7q7ghj09fhwg1br"; depends=[]; }; -pander = derive { name="pander"; version="0.5.1"; sha256="0m95vnrzw9v4cq52kn3a605gbk1qd24ivh7aywhk1lh0imlk7i85"; depends=[digest Rcpp Rcpp]; }; +pander = derive { name="pander"; version="0.5.2"; sha256="0zs2c00dr0vph9d4par3zcisnyqa98rqym8fpya02ka28qajjiia"; depends=[digest Rcpp]; }; panelAR = derive { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; panelaggregation = derive { name="panelaggregation"; version="0.1"; sha256="19426hab4rvgn8k2c7x327k4ymihas59jbys0nmrfgg074x0xdnm"; depends=[data_table]; }; +papeR = derive { name="papeR"; version="0.6-1"; sha256="1h3mfapn31qphaly01j5pw2ci65g4z0wh4m1wf5r808cspn0mya0"; depends=[car gmodels]; }; parallelMCMCcombine = derive { name="parallelMCMCcombine"; version="1.0"; sha256="05krkd643awqhfrylq9lxr2cmgvnm1msn2x8p1l1483n2gzyklz7"; depends=[mvtnorm]; }; -parallelMap = derive { name="parallelMap"; version="1.2"; sha256="1rd4q644xml29nj4mybgh8cr0h4wsadsf2wlyzppx5hg5yi27ff2"; depends=[BBmisc checkmate]; }; +parallelMap = derive { name="parallelMap"; version="1.3"; sha256="026d018fr2a43cbh8bi2dklzr9fxjzdw5qyq84g2i18v5ibr6bd5"; depends=[BBmisc checkmate]; }; +parallelSVM = derive { name="parallelSVM"; version="0.1-8"; sha256="19hmagv95nx8aw8xylk5vvpxw9a4fsa68r9q0x6irhq50wmah93r"; depends=[doParallel e1071 foreach]; }; parallelize_dynamic = derive { name="parallelize.dynamic"; version="0.9-1"; sha256="03zypcvk1iwkgy6dmd5bxg3h2bqvjikxrbzw676804zi6y49mhln"; depends=[]; }; paramlink = derive { name="paramlink"; version="0.9-6"; sha256="0pazllkjbqzvl9vmpvr67lkcsd960mipcd1p1nf00y8hknrwh7qp"; depends=[kinship2 maxLik]; }; paran = derive { name="paran"; version="1.5.1"; sha256="0nvgk01z2vypk5bawkd6pp0pnbgb54ljy0p8sc47c8ibk242ljqk"; depends=[MASS]; }; -parboost = derive { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[mboost party iterators plyr caret glmnet doParallel]; }; -parcor = derive { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[MASS glmnet ppls Epi GeneNet]; }; -parfossil = derive { name="parfossil"; version="0.2.0"; sha256="12gsc5n4ycvhzxvq5j0r3jnnrzw1q412dbvmakipyw2yx2l2s7jn"; depends=[fossil foreach]; }; -parma = derive { name="parma"; version="1.5-1"; sha256="0qrq3bx0amri9b3s6bym4znnk140jjd2abnvqyihaj4bf2glbl0g"; depends=[nloptr slam Rglpk quadprog FRAPO corpcor]; }; +parboost = derive { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; }; +parcor = derive { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; }; +parfm = derive { name="parfm"; version="2.5.8"; sha256="05bzmm5ahaip5apsv84fbqy8bag9pkkfsxvqw1cbcvlbr2zyxfgp"; depends=[eha msm survival]; }; +parfossil = derive { name="parfossil"; version="0.2.0"; sha256="12gsc5n4ycvhzxvq5j0r3jnnrzw1q412dbvmakipyw2yx2l2s7jn"; depends=[foreach fossil]; }; +parma = derive { name="parma"; version="1.5-1"; sha256="0qrq3bx0amri9b3s6bym4znnk140jjd2abnvqyihaj4bf2glbl0g"; depends=[corpcor FRAPO nloptr quadprog Rglpk slam]; }; parmigene = derive { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; parsedate = derive { name="parsedate"; version="1.1.1"; sha256="0mr97rw4fzg2v9dh5d4x0b76d5s56gi6zilq69yjhbx78w46apzc"; depends=[]; }; partDSA = derive { name="partDSA"; version="0.9.10"; sha256="1j6ihgyjiy8dnr89xkqvl1dkmdswvknffq7zc15civy0h781azv6"; depends=[survival]; }; -partialAR = derive { name="partialAR"; version="1.0.5"; sha256="1d8nbv3rkf0p4vg8mlb1l5cqzgsqqhigwiq2bnd4npak6fq6syvg"; depends=[Rcpp zoo ggplot2 MASS tseries data_table FKF urca plot3D Rcpp]; }; +partialAR = derive { name="partialAR"; version="1.0.5"; sha256="1d8nbv3rkf0p4vg8mlb1l5cqzgsqqhigwiq2bnd4npak6fq6syvg"; depends=[data_table FKF ggplot2 MASS plot3D Rcpp tseries urca zoo]; }; partialOR = derive { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; partitionMap = derive { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; partitions = derive { name="partitions"; version="1.9-15"; sha256="0jgpknm4zah50w9i3fbq2f1whm4hywm2j72vxc3ignx1snx2z0gs"; depends=[gmp polynom]; }; +partools = derive { name="partools"; version="1.0.1"; sha256="0id6fw582ag0zwkp0yjm5vfcd2gv1bsa3zzhfx2fgiaarhnhzmda"; depends=[]; }; partsm = derive { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; -party = derive { name="party"; version="1.0-20"; sha256="10d4hyzc8icgb51k4dkc1bwprky7sg35vpa9s3jcl9ifw6na0bgm"; depends=[mvtnorm modeltools strucchange survival coin zoo sandwich mvtnorm]; }; +party = derive { name="party"; version="1.0-21"; sha256="10kk3mw9kbkzhh5qacmq404d1r0scin2vc33wsf152lgc9fhs1xx"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive { name="partykit"; version="1.0-1"; sha256="12ja72nginkzl9zrpiidqwrih2zgwxksdkhbw7hbdjbsr4zb7q62"; depends=[survival]; }; parviol = derive { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; -pass = derive { name="pass"; version="1.0"; sha256="00dzwg2lnzmrrmzq3fyrs4axswgnsn7f62l2f2a8d8gyf8qzz3nf"; depends=[MASS lars ncvreg]; }; +pass = derive { name="pass"; version="1.0"; sha256="00dzwg2lnzmrrmzq3fyrs4axswgnsn7f62l2f2a8d8gyf8qzz3nf"; depends=[lars MASS ncvreg]; }; pastecs = derive { name="pastecs"; version="1.3-18"; sha256="0ixlnc1psgqgm71bsf5z5j65lvr92ghpsk9f1ifm94dzjhi6d22i"; depends=[boot]; }; -pastis = derive { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[caper ape]; }; -patchDVI = derive { name="patchDVI"; version="1.9.1601"; sha256="0vv1rmmd78n2r14dsl9fx25v6ym9mav557ya0aagr548wqcajf0m"; depends=[]; }; +pastis = derive { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[ape caper]; }; +patchDVI = derive { name="patchDVI"; version="1.9.1616"; sha256="1akdlzw8v2p1zz09bm88d63jyxj7fv5h50p459p9ml4yc816xvji"; depends=[]; }; patchPlot = derive { name="patchPlot"; version="0.1.5"; sha256="1b4k0dvvj6qwyxbqb36knyrawvy5qq8hl45pz896c9rkqhlg02bx"; depends=[datautils]; }; patchSynctex = derive { name="patchSynctex"; version="0.1-2"; sha256="1ssjs4mcsjad7g0yfi5sxwfyywsziry81rzwb4sly3afw8g538p9"; depends=[stringr]; }; -pathClass = derive { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[svmpath kernlab ROCR igraph lpSolve]; }; +pathClass = derive { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; }; pathdiagram = derive { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; }; pathmox = derive { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; }; pathological = derive { name="pathological"; version="0.0-6"; sha256="1a6a9q15nk8rcpyz5xpndq0gbdv7y2iq4jgqiv7sgd3j1agh26c6"; depends=[assertive plyr stringr]; }; pauwels2014 = derive { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; -pavo = derive { name="pavo"; version="0.5-1"; sha256="189kshc5dm02qv0rm1dlcxrhvga4yhlkn3yyj3rjhmrags4rmwcb"; depends=[rgl rcdd mapproj geometry]; }; +pavo = derive { name="pavo"; version="0.5-2"; sha256="13iy9dmg19v0gqg12224ci0zq8fa0ap2i0is8v0rkfp19wzy0ryg"; depends=[geometry mapproj rcdd rgl]; }; pawacc = derive { name="pawacc"; version="1.2.1"; sha256="1l2wn69ynr5mza04a5mmzwzigqac8k9xkiaw7sdqv5hn9y7x3sj9"; depends=[SparseM]; }; pbapply = derive { name="pbapply"; version="1.1-1"; sha256="1dshpnnmq1g2v223qy7pgbxydy9sqj04zwqxvzylm4mqc91ks4n2"; depends=[]; }; -pbatR = derive { name="pbatR"; version="2.2-9"; sha256="1p8rj0lzm4pp1svgy7xia2sclkngzfjbgbikq94s6v92d582wncw"; depends=[survival rootSolve]; }; -pbdBASE = derive { name="pbdBASE"; version="0.2-3"; sha256="1zfz45fnjmp8yz4nlac9q1d49gpczkl2b0rz2s33jbv5i32z3yvs"; depends=[rlecuyer pbdMPI pbdSLAP]; }; -pbdDEMO = derive { name="pbdDEMO"; version="0.2-0"; sha256="0vilri4d25mb339zsgh1zypyqxv1vzfdc8b8ivqi5yz1nrzm05gz"; depends=[rlecuyer pbdMPI pbdSLAP pbdBASE pbdDMAT]; }; -pbdDMAT = derive { name="pbdDMAT"; version="0.2-3"; sha256="18x607r0gx1nnw9p305ci5sfcxbi5zdr2b6yf9y6vqjsckicnw62"; depends=[rlecuyer pbdMPI pbdSLAP pbdBASE]; }; +pbatR = derive { name="pbatR"; version="2.2-9"; sha256="1p8rj0lzm4pp1svgy7xia2sclkngzfjbgbikq94s6v92d582wncw"; depends=[rootSolve survival]; }; +pbdBASE = derive { name="pbdBASE"; version="0.2-3"; sha256="1zfz45fnjmp8yz4nlac9q1d49gpczkl2b0rz2s33jbv5i32z3yvs"; depends=[pbdMPI pbdSLAP rlecuyer]; }; +pbdDEMO = derive { name="pbdDEMO"; version="0.2-0"; sha256="0vilri4d25mb339zsgh1zypyqxv1vzfdc8b8ivqi5yz1nrzm05gz"; depends=[pbdBASE pbdDMAT pbdMPI pbdSLAP rlecuyer]; }; +pbdDMAT = derive { name="pbdDMAT"; version="0.2-3"; sha256="18x607r0gx1nnw9p305ci5sfcxbi5zdr2b6yf9y6vqjsckicnw62"; depends=[pbdBASE pbdMPI pbdSLAP rlecuyer]; }; pbdMPI = derive { name="pbdMPI"; version="0.2-5"; sha256="0g21zyl8dck5mxjsg4iif62ngrigj58hr8mzdvr47r1b081abzb4"; depends=[rlecuyer]; }; pbdNCDF4 = derive { name="pbdNCDF4"; version="0.1-4"; sha256="0fd29mnbns30ck09kkh53dgj24ddrqzks4xrrk2hh1wiy7ap1h95"; depends=[]; }; pbdPROF = derive { name="pbdPROF"; version="0.2-3"; sha256="0vk29vgsv7fhw240sagz0szg0wb649sqc05j1aj027zvz931vfl8"; depends=[ggplot2 gridExtra reshape2]; }; -pbdSLAP = derive { name="pbdSLAP"; version="0.2-0"; sha256="06q9k8y7k604wa2zfspjg2v3fybn5my1vyr7zsg6j66n9g4z6039"; depends=[rlecuyer pbdMPI]; }; +pbdSLAP = derive { name="pbdSLAP"; version="0.2-0"; sha256="06q9k8y7k604wa2zfspjg2v3fybn5my1vyr7zsg6j66n9g4z6039"; depends=[pbdMPI rlecuyer]; }; pbivnorm = derive { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; -pbkrtest = derive { name="pbkrtest"; version="0.4-2"; sha256="1yppp24a8rl36x6sn1jjhhgs41irbf0z5nrv454g9qwhbvfgiay5"; depends=[lme4 Matrix MASS]; }; +pbkrtest = derive { name="pbkrtest"; version="0.4-2"; sha256="1yppp24a8rl36x6sn1jjhhgs41irbf0z5nrv454g9qwhbvfgiay5"; depends=[lme4 MASS Matrix]; }; pbo = derive { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; }; pbs = derive { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; pcIRT = derive { name="pcIRT"; version="0.1"; sha256="0vfbbmnp4jyrbi5d9gz1krh707aazbrqfcgc3rjrwwyjld11wyzn"; depends=[combinat]; }; pca3d = derive { name="pca3d"; version="0.3"; sha256="01nc4p68r7bnly18q8rkhnnj6vq9mwbb5hhdcblan6nhhlzhnld0"; depends=[rgl]; }; +pcaBootPlot = derive { name="pcaBootPlot"; version="0.1.0"; sha256="0h5i5qh4lhnhh7n9k1map10gvw70f7576gnxhjjc6l03sngm0yp7"; depends=[RColorBrewer]; }; pcaL1 = derive { name="pcaL1"; version="1.3"; sha256="026cgi812kvbkmaryd3lyqnb1m78i3ql2phlvsd2r691y1j8w532"; depends=[]; }; pcaPP = derive { name="pcaPP"; version="1.9-60"; sha256="1rqq4zgik7cgnnnm8il1rxamp6q9isznac8fhryfsfdcawclfjws"; depends=[mvtnorm]; }; -pcalg = derive { name="pcalg"; version="2.0-10"; sha256="1ph5n3hlxni039phvhr9r2nj62c4mw9zmf0857sqzv434hizdfzi"; depends=[abind igraph ggm corpcor robustbase vcd Rcpp bdsmatrix sfsmisc Rcpp RcppArmadillo BH]; }; +pcalg = derive { name="pcalg"; version="2.2-0"; sha256="1cgir5h9g8v3kjmdqnnjsc0z1f8wl3flnnxnk9y7km82x5pby0m7"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm gmp graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; pcg = derive { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; -pcnetmeta = derive { name="pcnetmeta"; version="2.1"; sha256="00vrlkzc6d5xgs4my8qr6f9skyjdi3i529i9sfmdcwwrwp2spr24"; depends=[rjags coda]; }; +pcnetmeta = derive { name="pcnetmeta"; version="2.2.1"; sha256="0y4sn1aby38c458667fsy2ndq64i8kknmzdc32mbvzd530p1yxai"; depends=[coda rjags]; }; pcrcoal = derive { name="pcrcoal"; version="1.1"; sha256="17mm13xpmghachiqr7v2691jk39mbfsadpg028gs3iiwmh0pksa0"; depends=[ape ggplot2 phylosim]; }; pcse = derive { name="pcse"; version="1.9"; sha256="04vprsvcmv1ivxqrrvd1f8ifg493byncqvmr84fmc0jw5m9jrk3j"; depends=[]; }; -pdR = derive { name="pdR"; version="1.2"; sha256="0dgw6i623a6w18q54b46fnbp38941hqdvjpcnxrbqwvcgk024pr6"; depends=[]; }; +pdR = derive { name="pdR"; version="1.3"; sha256="0y81nlvq5vwf6021m5ns6j4l44c5456jkbs2x9y7jfkw6r3v2ddf"; depends=[]; }; pdc = derive { name="pdc"; version="1.0.2"; sha256="0d7p65rkwrh39njhszdrbv25z4jz27746y1qyhqmhkxmvkx6g1fl"; depends=[]; }; pdfCluster = derive { name="pdfCluster"; version="1.0-2"; sha256="0kbci54dlzn736835fh18xnf2pmzqrdmwa3jim29xcnwa1r2gklb"; depends=[geometry]; }; -pdfetch = derive { name="pdfetch"; version="0.1.6"; sha256="1j3fdjnmfj84pfd5bc37ssbs83ya3ma0hj5iy1a0bg9wb5xqap13"; depends=[httr zoo xts XML lubridate jsonlite reshape2]; }; +pdfetch = derive { name="pdfetch"; version="0.1.6"; sha256="1j3fdjnmfj84pfd5bc37ssbs83ya3ma0hj5iy1a0bg9wb5xqap13"; depends=[httr jsonlite lubridate reshape2 XML xts zoo]; }; pdist = derive { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive { name="pdmod"; version="1.0"; sha256="1czpaghp2lcad4j6wxswdfw0n9m0phngy966zr4fr3ciqpx3q129"; depends=[mco]; }; -peacots = derive { name="peacots"; version="1.1"; sha256="042644i8x0s4nd425lp8v1i4jspib3qxkgvprgapdhgqcp6cabk0"; depends=[]; }; +peacots = derive { name="peacots"; version="1.2"; sha256="1qrg6rzdnj0ba6igj4k9m1kc2q7gbwg8kwnmzhkjfza8jl8fqkf2"; depends=[]; }; pear = derive { name="pear"; version="1.2"; sha256="1ixmyzm72s18qrfv2m8xzh5503k1q90lhddq4sp46m0q7qyxb192"; depends=[]; }; pearson7 = derive { name="pearson7"; version="1.0-1"; sha256="0li32my02gv5yaf4q1w48pjbmij2njkpd15135n9mzjc5ibvf5kh"; depends=[]; }; -pec = derive { name="pec"; version="2.4.4"; sha256="110v8jb6l79prbkm8vp1qgrdks598q3ygmqj2yyv1d5plmsj9dh6"; depends=[prodlim foreach rms survival]; }; -pedantics = derive { name="pedantics"; version="1.5"; sha256="0m5jxzkf1pf657q2klv6idnywg18ki962666nj7sfyl4rq06xhsi"; depends=[MasterBayes MCMCglmm kinship2]; }; -pedgene = derive { name="pedgene"; version="2.1"; sha256="0nmp1s0i5b4h45p3f4rvvixjz8sgv56as3c85rvv3a8xwfd1gcxq"; depends=[Matrix CompQuadForm survey kinship2]; }; -pedigree = derive { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[Matrix HaploSim reshape]; }; +pec = derive { name="pec"; version="2.4.4"; sha256="110v8jb6l79prbkm8vp1qgrdks598q3ygmqj2yyv1d5plmsj9dh6"; depends=[foreach prodlim rms survival]; }; +pedantics = derive { name="pedantics"; version="1.5"; sha256="0m5jxzkf1pf657q2klv6idnywg18ki962666nj7sfyl4rq06xhsi"; depends=[kinship2 MasterBayes MCMCglmm]; }; +pedgene = derive { name="pedgene"; version="2.1"; sha256="0nmp1s0i5b4h45p3f4rvvixjz8sgv56as3c85rvv3a8xwfd1gcxq"; depends=[CompQuadForm kinship2 Matrix survey]; }; +pedigree = derive { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; pedigreemm = derive { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; -pedometrics = derive { name="pedometrics"; version="0.4-1"; sha256="0pzkkjp126g64q6avlk7bqrhcl6y5zz8vmfrq68k4yck34c1gn16"; depends=[car fields gstat lattice latticeExtra MASS moments plyr pbapply Rcpp sp spsurvey xtable Rcpp]; }; -pegas = derive { name="pegas"; version="0.7"; sha256="1vhlg40jz938h63isi5c8cjfqrwnh5miyl5kg2hbybw9awlp6gjj"; depends=[ape adegenet]; }; -penDvine = derive { name="penDvine"; version="0.2.2"; sha256="054vw99z68pk0bi4yzdmvx13x8n75sj2371l8w2yady1lqjj4qi7"; depends=[lattice quadprog TSP fda Matrix]; }; -penMSM = derive { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp Rcpp]; }; +pedometrics = derive { name="pedometrics"; version="0.6-2"; sha256="137685gyd7k9vpjnsy6h280cdbl15bchrizfnalnz6nizi0q85lj"; depends=[car gstat Hmisc lattice latticeExtra MASS moments pbapply plyr Rcpp sp spsurvey xtable]; }; +pegas = derive { name="pegas"; version="0.8"; sha256="0074r6vsnvdc0gkqhb3cb4dybpgp4ryf38lrfkk8vrs3y9gb7hdh"; depends=[adegenet ape]; }; +penDvine = derive { name="penDvine"; version="0.2.2"; sha256="054vw99z68pk0bi4yzdmvx13x8n75sj2371l8w2yady1lqjj4qi7"; depends=[fda lattice Matrix quadprog TSP]; }; +penMSM = derive { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; }; penalized = derive { name="penalized"; version="0.9-45"; sha256="0svmhsh0lv3d571jyhk73zd9slcd6xnp3p0l1ijab9gl2rjhlzz5"; depends=[survival]; }; penalizedLDA = derive { name="penalizedLDA"; version="1.0"; sha256="1ib33l5nqmvi6qn9ykybkdpc0pp55k1b6x4vqpklzp3dgckg0lp6"; depends=[flsa]; }; -penalizedSVM = derive { name="penalizedSVM"; version="1.1"; sha256="0zc36cgcrdy4rwhg4hhhahymqfalvc5v2zmqq56ikz5blln82qvq"; depends=[e1071 MASS corpcor statmod tgp mlegp lhs]; }; -pencopula = derive { name="pencopula"; version="0.3.5"; sha256="1cy36pprbrfabk9n3x4d1xbj1vd2dda7xq3ihj2hzniwn77j63wi"; depends=[lattice fda quadprog latticeExtra]; }; -pendensity = derive { name="pendensity"; version="0.2.8"; sha256="18mnpsmfnqkbhg75lnqvs0iigx3mk9zr923wpygqviw5qxlwk5km"; depends=[lattice fda]; }; -pensim = derive { name="pensim"; version="1.2.9"; sha256="10nrnxwfs41bhybs7j6xgnx0pq3c802n9k8irngmh8iy4w3wbhrq"; depends=[penalized MASS]; }; +penalizedSVM = derive { name="penalizedSVM"; version="1.1"; sha256="0zc36cgcrdy4rwhg4hhhahymqfalvc5v2zmqq56ikz5blln82qvq"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; +pencopula = derive { name="pencopula"; version="0.3.5"; sha256="1cy36pprbrfabk9n3x4d1xbj1vd2dda7xq3ihj2hzniwn77j63wi"; depends=[fda lattice latticeExtra quadprog]; }; +pendensity = derive { name="pendensity"; version="0.2.8"; sha256="18mnpsmfnqkbhg75lnqvs0iigx3mk9zr923wpygqviw5qxlwk5km"; depends=[fda lattice]; }; +pensim = derive { name="pensim"; version="1.2.9"; sha256="10nrnxwfs41bhybs7j6xgnx0pq3c802n9k8irngmh8iy4w3wbhrq"; depends=[MASS penalized]; }; peperr = derive { name="peperr"; version="1.1-7"; sha256="01a6sxcmb8v2iz2xdwhdnr92k3w2vn3hr0hg9b6mkpzjf4n45q3k"; depends=[snowfall survival]; }; peplib = derive { name="peplib"; version="1.5.1"; sha256="1bdgmwbk76ryl5gxcgf3slds92yilg9p1x1lx0hnzzwcgx99wif3"; depends=[]; }; -peptider = derive { name="peptider"; version="0.2"; sha256="1mrwa5pcmc0vbs7n39003bxia2hd6msjkl0j0b21d05accbvzph1"; depends=[discreteRV plyr dplyr]; }; -pequod = derive { name="pequod"; version="0.0-3"; sha256="14nag0bd2icg294y7n47c6xlw54rrdia887d2ni6achjqgwvffzh"; depends=[ggplot2 car]; }; +peptider = derive { name="peptider"; version="0.2"; sha256="1mrwa5pcmc0vbs7n39003bxia2hd6msjkl0j0b21d05accbvzph1"; depends=[discreteRV dplyr plyr]; }; +pequod = derive { name="pequod"; version="0.0-3"; sha256="14nag0bd2icg294y7n47c6xlw54rrdia887d2ni6achjqgwvffzh"; depends=[car ggplot2]; }; perARMA = derive { name="perARMA"; version="1.5"; sha256="1d9vrxv8r6qgxhaz3pv8n34c526gi5cd8w7wxy9qc914y8kplmzr"; depends=[corpcor gnm matlab Matrix signal]; }; -performanceEstimation = derive { name="performanceEstimation"; version="1.0.0"; sha256="176crk5vf9fw52qwsbwcwyp0l9v0kg27jwz2krx295d8kq22ygrj"; depends=[ggplot2 foreach doParallel]; }; +performanceEstimation = derive { name="performanceEstimation"; version="1.0.1"; sha256="102f6h8cqmfb1ch9amf9qhm4p5r8i8236z8yfpg645vbkcc3i78n"; depends=[doParallel foreach ggplot2]; }; perm = derive { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; }; -permGPU = derive { name="permGPU"; version="0.14.6"; sha256="1h01nfq8hn7i29xanma70q6s5mj83znbb2lg9x7bjgdrgj38vy2m"; depends=[RUnit foreach survival]; }; +permGPU = derive { name="permGPU"; version="0.14.6"; sha256="1h01nfq8hn7i29xanma70q6s5mj83znbb2lg9x7bjgdrgj38vy2m"; depends=[Biobase foreach RUnit survival]; }; permtest = derive { name="permtest"; version="1.2"; sha256="1sciyjs840h004zg8bwclq0j0n22anvjvx3fz62y4dzblrynhrci"; depends=[]; }; -permute = derive { name="permute"; version="0.8-3"; sha256="0zc3b3cl7q7y9pglc690ldg6p7bl7d1h7xkwnqqmvrpn7cq29rdb"; depends=[]; }; +permute = derive { name="permute"; version="0.8-4"; sha256="1z5pmq9dy93rpsdb73waqrqmnvvi9ygx1v5l81a2n1j1kb4lmksv"; depends=[]; }; perry = derive { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; }; persiandictionary = derive { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; +perspectev = derive { name="perspectev"; version="1.0"; sha256="1qqhja7vqji9313dxxy1a9a50h5zxwxgc5s16lssczjachkqaibk"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; perturb = derive { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; }; pesticides = derive { name="pesticides"; version="0.1"; sha256="1w180hqqav0mh9sr9djj94sf55fzh4r373a7h08a2nz9nyjpq09w"; depends=[]; }; -pez = derive { name="pez"; version="1.0-0"; sha256="0d1npc2w6gzi4ki7gwqa0f4sklz0sml8q0cmgb77hpvgrny47mk3"; depends=[ape caper picante quantreg mvtnorm vegan ade4 apTreeshape FD plotrix Matrix]; }; +pez = derive { name="pez"; version="1.0-0"; sha256="0d1npc2w6gzi4ki7gwqa0f4sklz0sml8q0cmgb77hpvgrny47mk3"; depends=[ade4 ape apTreeshape caper FD Matrix mvtnorm picante plotrix quantreg vegan]; }; pgam = derive { name="pgam"; version="0.4.12"; sha256="0vhac2mysd053bswy3xwpiz0q0qh260hziw6bygpf83vkj94qf2v"; depends=[]; }; -pgirmess = derive { name="pgirmess"; version="1.6.0"; sha256="0b2sxk2q4cylsb5ch9bq1grdifp2sww7bv1bgl9zn0j6h611gif5"; depends=[boot nlme rgdal sp spdep splancs]; }; +pgirmess = derive { name="pgirmess"; version="1.6.2"; sha256="02i2jp345hyzz0s3rfxn3rpx0yl1aw6r0r0zaw471j5l9m6s85kw"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive { name="pglm"; version="0.1-2"; sha256="1arn2gf0bkg0s59a96hyhrm7adw66d33qs2al2s0ghln6fyk8674"; depends=[maxLik plm statmod]; }; pgmm = derive { name="pgmm"; version="1.2"; sha256="0f0wdcirjyxzg2139c055i035qzmhm01yvf97nrhp69h4hpynb2n"; depends=[]; }; pgs = derive { name="pgs"; version="0.4-0"; sha256="1zf5sjn662sds3h06zk5p4g71qnpwp5yhw1dkjzs1rs48pxmagrx"; depends=[gsl R2Cuba]; }; phalen = derive { name="phalen"; version="1.0"; sha256="0awj9a48dy0azkhqkkzf82q75hrsb2yw6dgbsvlsb0a71g4wyhlr"; depends=[sqldf]; }; -phangorn = derive { name="phangorn"; version="1.99-13"; sha256="1d6awphvzkznqvp30bxdi6j6chlakfxrvmkk9a4by21fxa29xmp9"; depends=[ape quadprog igraph Matrix nnls]; }; +phangorn = derive { name="phangorn"; version="1.99-13"; sha256="1d6awphvzkznqvp30bxdi6j6chlakfxrvmkk9a4by21fxa29xmp9"; depends=[ape igraph Matrix nnls quadprog]; }; phaseR = derive { name="phaseR"; version="1.3"; sha256="1hwclb7lys00vc260y3z9428b5dgm7zq474i8yg0w07rxqriaq2h"; depends=[deSolve]; }; phcfM = derive { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; }; -pheatmap = derive { name="pheatmap"; version="1.0.2"; sha256="0nmq5w2jcljbd81v428xl4mvqzrm4vxxlwyhkimi4hj8a9rqw743"; depends=[RColorBrewer scales gtable]; }; +pheatmap = derive { name="pheatmap"; version="1.0.2"; sha256="0nmq5w2jcljbd81v428xl4mvqzrm4vxxlwyhkimi4hj8a9rqw743"; depends=[gtable RColorBrewer scales]; }; phenability = derive { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; }; phenex = derive { name="phenex"; version="1.0-7"; sha256="0q563cv9lskikf3ls0idp56lirw9gxn71rgxp9xn8an05gwdg0xr"; depends=[]; }; -phenmod = derive { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat RColorBrewer lattice pheno]; }; -pheno = derive { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme SparseM quantreg]; }; -pheno2geno = derive { name="pheno2geno"; version="1.3.1"; sha256="1k1hw5qxrwxy502zkcfcz0nxjqmvdk1fgghjc512vq7x5znblz3v"; depends=[qtl VGAM mixtools]; }; -phenology = derive { name="phenology"; version="4.2"; sha256="141k2rfjmrx0cfzzcdf3q67chxq1jqp524rxcpdq3m7bnbkv67k3"; depends=[fields zoo coda HelpersMG shiny]; }; +phenmod = derive { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; +pheno = derive { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; +pheno2geno = derive { name="pheno2geno"; version="1.3.1"; sha256="1k1hw5qxrwxy502zkcfcz0nxjqmvdk1fgghjc512vq7x5znblz3v"; depends=[mixtools qtl VGAM]; }; +phenology = derive { name="phenology"; version="4.2"; sha256="141k2rfjmrx0cfzzcdf3q67chxq1jqp524rxcpdq3m7bnbkv67k3"; depends=[coda fields HelpersMG shiny zoo]; }; phia = derive { name="phia"; version="0.2-0"; sha256="1v2znss1snqrn3bpd0513jmw0x39p9vpwdc60klx725yrr2cfznw"; depends=[car Matrix]; }; -phmm = derive { name="phmm"; version="0.7-5"; sha256="0dil0ha199yh85j1skwfdl0v02vxdmb0xcc1jdbayjr5jrn9m1zk"; depends=[survival lattice Matrix]; }; -phom = derive { name="phom"; version="1.0.3"; sha256="0x05p6fn4kycilal65k7dy6h3w5i3ca9w93ryp4gqd4lp50l1749"; depends=[Rcpp Rcpp]; }; -phonR = derive { name="phonR"; version="1.0-3"; sha256="09wzsq92jkxy6cd89czshpj1hsp56v9jbgqr5a06rm6bv3spa31i"; depends=[splancs deldir plotrix]; }; +phmm = derive { name="phmm"; version="0.7-5"; sha256="0dil0ha199yh85j1skwfdl0v02vxdmb0xcc1jdbayjr5jrn9m1zk"; depends=[lattice Matrix survival]; }; +phom = derive { name="phom"; version="1.0.3"; sha256="0x05p6fn4kycilal65k7dy6h3w5i3ca9w93ryp4gqd4lp50l1749"; depends=[Rcpp]; }; +phonR = derive { name="phonR"; version="1.0-3"; sha256="09wzsq92jkxy6cd89czshpj1hsp56v9jbgqr5a06rm6bv3spa31i"; depends=[deldir plotrix splancs]; }; phonTools = derive { name="phonTools"; version="0.2-2.0"; sha256="1wd1a5506p3ny6vi9pq6yg9gbz082fxw4l3cxsplkdpqgkhryrww"; depends=[]; }; phreeqc = derive { name="phreeqc"; version="1.0-9102"; sha256="09vwqd4mf64l76vgg32vm9vkc8ra6cls9nvrp3ckkj9l2fwcnbzf"; depends=[]; }; phtt = derive { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; }; phyclust = derive { name="phyclust"; version="0.1-15"; sha256="1j643k0mjmswsvp9jyiawkjf2qhfrw6xf4s2viqv987zxif2kd7z"; depends=[ape]; }; phylin = derive { name="phylin"; version="1.0"; sha256="10pbs4adsyp43i89jb3xi0m55sl1w7ifmc98v74iq9p8xa15sdci"; depends=[]; }; -phyloTop = derive { name="phyloTop"; version="1.1.1"; sha256="046myyr01c4zc6sfy7r6p2vswkqqqd3w4k173gjbjazl1ims1sjs"; depends=[phylobase NHPoisson ape igraph]; }; -phylobase = derive { name="phylobase"; version="0.6.8"; sha256="0xj7x4cdfp0yadvjhdkw1ai3yd081ri4gpdg0n5g0z13cjaa6mjh"; depends=[ade4 ape Rcpp Rcpp]; }; +phyloTop = derive { name="phyloTop"; version="1.1.1"; sha256="046myyr01c4zc6sfy7r6p2vswkqqqd3w4k173gjbjazl1ims1sjs"; depends=[ape igraph NHPoisson phylobase]; }; +phylobase = derive { name="phylobase"; version="0.6.8"; sha256="0xj7x4cdfp0yadvjhdkw1ai3yd081ri4gpdg0n5g0z13cjaa6mjh"; depends=[ade4 ape Rcpp]; }; phyloclim = derive { name="phyloclim"; version="0.9-4"; sha256="0ngg8x192lrhd75rr6qbh72pqijbrhrpizl27q0vr6hp7n9ch3zx"; depends=[ape raster]; }; -phylocurve = derive { name="phylocurve"; version="1.0.0"; sha256="13gfavzkkicqcmdxfh9779a81kjgffskchqm0ygqkwhy9afnsxwr"; depends=[ape geiger phytools abind phylolm]; }; +phylocurve = derive { name="phylocurve"; version="1.2.0"; sha256="13yv9q2p141gwvpr413v688iwx9ljf2x315gsc2rxx8q9bbj79dr"; depends=[abind ape drc dtw geiger GPfit phylolm phytools]; }; phyloland = derive { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; phylolm = derive { name="phylolm"; version="2.2"; sha256="1x1mi1mcq3ijbqhr0951scqzv4zza0r3fcs0hh4gpbr8z49b6d98"; depends=[ape]; }; -phylosim = derive { name="phylosim"; version="2.1.1"; sha256="0rrz5c7zl2hjalwm6m8pydikiwmiq2dybx2yhzp0ps2bcsn02lhn"; depends=[R_oo ape compoisson ggplot2 R_methodsS3]; }; -phylotools = derive { name="phylotools"; version="0.1.2"; sha256="19w7xzk6sk1g9br7vwv338nvszzh0lk5rdzf0khiywka31bbsjyb"; depends=[seqRFLP ape picante spaa fields]; }; +phylosim = derive { name="phylosim"; version="2.1.1"; sha256="0rrz5c7zl2hjalwm6m8pydikiwmiq2dybx2yhzp0ps2bcsn02lhn"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; }; +phylotools = derive { name="phylotools"; version="0.1.2"; sha256="19w7xzk6sk1g9br7vwv338nvszzh0lk5rdzf0khiywka31bbsjyb"; depends=[ape fields picante seqRFLP spaa]; }; phyreg = derive { name="phyreg"; version="0.7"; sha256="0saynhq4yvd4x2xaljcsfmqk7da2jq3jqk26fm9qivg900z4kf35"; depends=[]; }; physiology = derive { name="physiology"; version="0.2.2"; sha256="0z394smbnmlrnp9ms5vjczc3avrcn5nxm8np5y58k86x470w6npz"; depends=[]; }; -phytools = derive { name="phytools"; version="0.4-56"; sha256="18cib7yjlbzdpfs5piwx5cw0h7fk26s04wsb2vdfiybr306a9jk2"; depends=[ape maps animation clusterGeneration mnormt msm numDeriv phangorn plotrix scatterplot3d]; }; -phytotools = derive { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[insol FME]; }; -pi0 = derive { name="pi0"; version="1.3-250"; sha256="1561zvf1hcd05iqy245c0z23mi8ypk6q3lkfldcr55cs67w4lmz6"; depends=[LowRankQP Matrix numDeriv limSolve rgl scatterplot3d Iso quadprog kernlab]; }; -picante = derive { name="picante"; version="1.6-2"; sha256="1zxpd8kh3ay6f3gdqkij1a6vnkr98dc1jib2r6br2kjyzshabcsd"; depends=[ape vegan nlme]; }; -picasso = derive { name="picasso"; version="0.3.0"; sha256="0z314akr1x2a28hh5hbb7mzkyaxsj4dfkdmx10l6gqllgk9j5qca"; depends=[lattice igraph MASS Matrix]; }; +phytools = derive { name="phytools"; version="0.4-56"; sha256="18cib7yjlbzdpfs5piwx5cw0h7fk26s04wsb2vdfiybr306a9jk2"; depends=[animation ape clusterGeneration maps mnormt msm numDeriv phangorn plotrix scatterplot3d]; }; +phytotools = derive { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; +pi0 = derive { name="pi0"; version="1.3-250"; sha256="1561zvf1hcd05iqy245c0z23mi8ypk6q3lkfldcr55cs67w4lmz6"; depends=[Iso kernlab limSolve LowRankQP Matrix numDeriv quadprog qvalue rgl scatterplot3d]; }; +picante = derive { name="picante"; version="1.6-2"; sha256="1zxpd8kh3ay6f3gdqkij1a6vnkr98dc1jib2r6br2kjyzshabcsd"; depends=[ape nlme vegan]; }; +picasso = derive { name="picasso"; version="0.3.0"; sha256="0z314akr1x2a28hh5hbb7mzkyaxsj4dfkdmx10l6gqllgk9j5qca"; depends=[igraph lattice MASS Matrix]; }; pingr = derive { name="pingr"; version="1.1.0"; sha256="0j03qcsyckv3zh2v4m8wz8kyfl0k8qi71rm20rc0spy1s9ng7fcb"; depends=[]; }; -pipe_design = derive { name="pipe.design"; version="0.1"; sha256="0hy3n15b4a2319xn2gix9vca3qryy7hjsxlh0z8k96l24ql0r62z"; depends=[ggplot2 gtools]; }; +pipe_design = derive { name="pipe.design"; version="0.2"; sha256="1hmc4g3bnpwicjr53xz8yhhshnfhd2fqx9c6v4af8wvnqpy7mlpq"; depends=[ggplot2 gtools]; }; pipeR = derive { name="pipeR"; version="0.6"; sha256="15hq6i1cv072jpw71slij534s85xljkjk2ygxpkgq3cyngbq3jxb"; depends=[]; }; -pitchRx = derive { name="pitchRx"; version="1.7"; sha256="0mx948bahw0zr0915hz9lcws7iq2l0ikgx4gjnnfhhpiii86xs57"; depends=[ggplot2 XML2R plyr MASS hexbin mgcv]; }; +pitchRx = derive { name="pitchRx"; version="1.7"; sha256="0mx948bahw0zr0915hz9lcws7iq2l0ikgx4gjnnfhhpiii86xs57"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; pixmap = derive { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; -pkgKitten = derive { name="pkgKitten"; version="0.1.2"; sha256="0nk51c3cx9hy8dwdi7llf9k6kq8495dvy8bxjlajwiwd39jipvgs"; depends=[]; }; -pkgmaker = derive { name="pkgmaker"; version="0.22"; sha256="0vrqnd3kg6liqvpbd969jjsdx0f0rvmmxgdbwwrp6xfmdg0pib8r"; depends=[registry codetools digest stringr xtable]; }; -pks = derive { name="pks"; version="0.3-0"; sha256="0lvj5kfjf8wikszz1dipwr1fw9xbhy3nx0ksqz4ln240k7fn5kcj"; depends=[sets]; }; +pkgKitten = derive { name="pkgKitten"; version="0.1.3"; sha256="1f7jkriib1f19mc5mdrymg5xzdcyclfvh1220agy4lpyprxgza0f"; depends=[]; }; +pkgmaker = derive { name="pkgmaker"; version="0.22"; sha256="0vrqnd3kg6liqvpbd969jjsdx0f0rvmmxgdbwwrp6xfmdg0pib8r"; depends=[codetools digest registry stringr xtable]; }; +pks = derive { name="pks"; version="0.3-1"; sha256="1nr36k960yv71yfxkzchjk814sf921hdiiakxvv5f9dxpf00hxp4"; depends=[sets]; }; plRasch = derive { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; plan = derive { name="plan"; version="0.4-2"; sha256="0vwiv8gcjdbnsxd8zqf0j1yh6gvbzm0b5kr7m47ha9z64d7wxch6"; depends=[]; }; -planar = derive { name="planar"; version="1.5.2"; sha256="1w843qk88x3kzi4q79d5ifzgp975dj4ih93g2g6fa6wh529j4w3h"; depends=[dielectric Rcpp statmod cubature reshape2 plyr Rcpp RcppArmadillo]; }; +planar = derive { name="planar"; version="1.5.2"; sha256="1w843qk88x3kzi4q79d5ifzgp975dj4ih93g2g6fa6wh529j4w3h"; depends=[cubature dielectric plyr Rcpp RcppArmadillo reshape2 statmod]; }; planor = derive { name="planor"; version="0.2-3"; sha256="1j550zqm3h4kz7jz4fkgp0z92skwpyxz0lnr7pfif4pya1mxd6f9"; depends=[conf_design]; }; plantecophys = derive { name="plantecophys"; version="0.6"; sha256="1gxc84njpii82p6n04djbp4n9wni49lxfvmljqz48r643hv48a7h"; depends=[]; }; plaqr = derive { name="plaqr"; version="1.0"; sha256="1vv15zqnmir5hi9ivyifzrc1rkn1sn5qj61by66iczmlmhqh17h8"; depends=[quantreg]; }; -playwith = derive { name="playwith"; version="0.9-54"; sha256="1zmm8sskchim3ba3l0zqfvxnrqfmiv94a8l6slcf3if3cf9kkzal"; depends=[lattice cairoDevice gWidgetsRGtk2 RGtk2 gWidgets gridBase]; }; -plfm = derive { name="plfm"; version="1.1.2"; sha256="1dl2pv2v7kp39hlbk5kb33kzhg9dzxjxhafdjv9dqpqb9b77akm8"; depends=[sfsmisc abind]; }; +playwith = derive { name="playwith"; version="0.9-54"; sha256="1zmm8sskchim3ba3l0zqfvxnrqfmiv94a8l6slcf3if3cf9kkzal"; depends=[cairoDevice gridBase gWidgets gWidgetsRGtk2 lattice RGtk2]; }; +plfm = derive { name="plfm"; version="1.1.2"; sha256="1dl2pv2v7kp39hlbk5kb33kzhg9dzxjxhafdjv9dqpqb9b77akm8"; depends=[abind sfsmisc]; }; plgp = derive { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; -plm = derive { name="plm"; version="1.4-0"; sha256="13y9s7gyrgqmnzafhn4c1zkz6gdawc8nr5nbrx0pn2mbw3fqfrjh"; depends=[Formula MASS bdsmatrix zoo nlme sandwich]; }; -plmDE = derive { name="plmDE"; version="1.0"; sha256="19xxi0zzpxcrsdrbs0hiwqgnv2aaw1q3mi586wv27zz6lfqcr9lr"; depends=[MASS R_oo]; }; -plmm = derive { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[sm Formula nlme]; }; +plm = derive { name="plm"; version="1.4-0"; sha256="13y9s7gyrgqmnzafhn4c1zkz6gdawc8nr5nbrx0pn2mbw3fqfrjh"; depends=[bdsmatrix Formula MASS nlme sandwich zoo]; }; +plmDE = derive { name="plmDE"; version="1.0"; sha256="19xxi0zzpxcrsdrbs0hiwqgnv2aaw1q3mi586wv27zz6lfqcr9lr"; depends=[limma MASS R_oo]; }; +plmm = derive { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; pln = derive { name="pln"; version="0.2-1"; sha256="09zg7zwmmqpjr1j59lqsjf4blrkya9wfwddgzfm9rr5jxrzvqcv8"; depends=[]; }; plot2groups = derive { name="plot2groups"; version="0.10"; sha256="00mp82vvx6inlc2zj2cqqnzyglrm9x9im2vrqqk8j2jn0hbgfymy"; depends=[ggplot2]; }; plot3D = derive { name="plot3D"; version="1.0-2"; sha256="0qsrd1na4xw2bm1rzwj3asgkh7xqpyja0dxdmz41f3x58ip9wnz1"; depends=[misc3d]; }; -plot3Drgl = derive { name="plot3Drgl"; version="1.0"; sha256="109vsivif4hmw2hk3hi4y703d3snzxbr9pzhn1846imdclkl12yg"; depends=[rgl plot3D]; }; -plotGoogleMaps = derive { name="plotGoogleMaps"; version="2.2"; sha256="0qv57k46ncg0wrgma0sbr3xf0j9j8cii3ppk3gs65ardghs3bf6b"; depends=[sp spacetime rgdal maptools lattice raster]; }; -plotKML = derive { name="plotKML"; version="0.5-2"; sha256="006f6j3k2yb20zcmx2lq9d4yy5awpsaxkcp17r6q42bdrffkc0m9"; depends=[XML sp raster rgdal spacetime colorspace plotrix dismo aqp pixmap plyr stringr colorRamps scales gstat zoo RColorBrewer RSAGA classInt]; }; +plot3Drgl = derive { name="plot3Drgl"; version="1.0"; sha256="109vsivif4hmw2hk3hi4y703d3snzxbr9pzhn1846imdclkl12yg"; depends=[plot3D rgl]; }; +plotGoogleMaps = derive { name="plotGoogleMaps"; version="2.2"; sha256="0qv57k46ncg0wrgma0sbr3xf0j9j8cii3ppk3gs65ardghs3bf6b"; depends=[lattice maptools raster rgdal sp spacetime]; }; +plotKML = derive { name="plotKML"; version="0.5-2"; sha256="006f6j3k2yb20zcmx2lq9d4yy5awpsaxkcp17r6q42bdrffkc0m9"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; plotMCMC = derive { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; }; plotROC = derive { name="plotROC"; version="1.3.3"; sha256="090fpj3b5vp0r2zrn38yxiy205mk9kx1fpwp0g8rl4bsa88v4c9y"; depends=[ggplot2 gridSVG shiny]; }; -plotSEMM = derive { name="plotSEMM"; version="2.0"; sha256="0n30m1nz9fnilbgxg5jcmx2bsscdvz5mkjkyrgx7yr3alazkaimd"; depends=[plyr shiny MplusAutomation Rcpp plotrix Rcpp]; }; -plotmo = derive { name="plotmo"; version="3.1.0"; sha256="1z735ks92d1gfx6hk29mnj18a9hpsmifjy8qgh5lv9z0mwd7igca"; depends=[plotrix TeachingDemos]; }; +plotSEMM = derive { name="plotSEMM"; version="2.0"; sha256="0n30m1nz9fnilbgxg5jcmx2bsscdvz5mkjkyrgx7yr3alazkaimd"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; +plotmo = derive { name="plotmo"; version="3.1.2"; sha256="13f821w1y7xr535yqykcr3mmrndrg47xk6cfqkyd1z2maw50n2hs"; depends=[plotrix TeachingDemos]; }; plotpc = derive { name="plotpc"; version="1.0.3"; sha256="0dw9k702a67c2k77dl4k2747lhsr84x41qrgj5mp9jnyfq6naciq"; depends=[]; }; -plotrix = derive { name="plotrix"; version="3.5-11"; sha256="01vb3i7hkc3krvl9v4f8fnpfcv62p4ci2vbm2qs5w593h70bys7c"; depends=[]; }; +plotrix = derive { name="plotrix"; version="3.5-12"; sha256="13gffp7zp46wal83609652x48i63zb5i20x6ycmgc97l4nanhrfi"; depends=[]; }; pls = derive { name="pls"; version="2.4-3"; sha256="114ka4766x8fx0zvvr7cylky1jsy542nj6s7sb2dwv8zjhbclkhn"; depends=[]; }; -plsRbeta = derive { name="plsRbeta"; version="0.2.0"; sha256="1b8yldz5nzw3gilv9wk79bxcqb0hrgsxi2cn6qlby5nf9b4zmzv8"; depends=[mvtnorm boot Formula plsdof MASS betareg plsRglm]; }; -plsRcox = derive { name="plsRcox"; version="1.7.2"; sha256="1c3ll13m27ndwlc9r79ilzl0i6cyp870x66swlbg6387whf7wn2r"; depends=[survival plsRglm lars pls kernlab mixOmics risksetROC survAUC rms]; }; -plsRglm = derive { name="plsRglm"; version="1.1.1"; sha256="1bx1pl1pv47z3yj3ngkd97j10v2h8jqiybcqbm3kvqhgqydm07rp"; depends=[mvtnorm boot bipartite car]; }; +plsRbeta = derive { name="plsRbeta"; version="0.2.0"; sha256="1b8yldz5nzw3gilv9wk79bxcqb0hrgsxi2cn6qlby5nf9b4zmzv8"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; }; +plsRcox = derive { name="plsRcox"; version="1.7.2"; sha256="1c3ll13m27ndwlc9r79ilzl0i6cyp870x66swlbg6387whf7wn2r"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; +plsRglm = derive { name="plsRglm"; version="1.1.1"; sha256="1bx1pl1pv47z3yj3ngkd97j10v2h8jqiybcqbm3kvqhgqydm07rp"; depends=[bipartite boot car mvtnorm]; }; plsdepot = derive { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; plsdof = derive { name="plsdof"; version="0.2-7"; sha256="1z8z9m0nsnyy1fipzvm1srpxn3q6wjrlivmmki1f8plwkixkyc5y"; depends=[MASS]; }; -plsgenomics = derive { name="plsgenomics"; version="1.3"; sha256="0gzk7sgv6bqkay7j854xsmyr3vwsdb2dbcnffv1ygdxikj64icp4"; depends=[MASS boot]; }; -plspm = derive { name="plspm"; version="0.4.2"; sha256="0q7mx5ydw61z1qcs0flpwpnnrcwsfsh3razc8jnd4z1xn96i3x85"; depends=[amap diagram tester turner]; }; +plsgenomics = derive { name="plsgenomics"; version="1.3-1"; sha256="0vddhzqfix8q692mdls227m2l6zjzbjwp1ia5j9shy71ycg2fzn9"; depends=[boot MASS]; }; +plspm = derive { name="plspm"; version="0.4.7"; sha256="0iy4qw4zjgqxg93a827qjcm32yipmnrl4gzn4hmskjd4khm9ngwd"; depends=[amap diagram shape tester turner]; }; plugdensity = derive { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; plumbr = derive { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; plus = derive { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; -plusser = derive { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[RCurl RJSONIO lubridate plyr]; }; -plyr = derive { name="plyr"; version="1.8.2"; sha256="1dizvj3xvp1cg8sm21xpk0kgfpil1n1q60zkanz6yh9cnnp6g306"; depends=[Rcpp Rcpp]; }; +plusser = derive { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; +plyr = derive { name="plyr"; version="1.8.3"; sha256="06v4zxawpjz37rp2q2ii5q43g664z9s29j4ydn0cz3crn7lzl6pk"; depends=[Rcpp]; }; pmcgd = derive { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; -pmclust = derive { name="pmclust"; version="0.1-6"; sha256="05zjx4psvk5zjmr0iwwwig990g6h04ajn5wi0xi8bqv046r47q3h"; depends=[rlecuyer pbdMPI MASS]; }; -pmg = derive { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiqvw0ls8igkk8s1xc7k8ympfqi6"; depends=[gWidgets gWidgetsRGtk2 proto lattice foreign MASS]; }; +pmclust = derive { name="pmclust"; version="0.1-6"; sha256="05zjx4psvk5zjmr0iwwwig990g6h04ajn5wi0xi8bqv046r47q3h"; depends=[MASS pbdMPI rlecuyer]; }; +pmg = derive { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiqvw0ls8igkk8s1xc7k8ympfqi6"; depends=[foreign gWidgets gWidgetsRGtk2 lattice MASS proto]; }; pmlr = derive { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqziag8y04cidlfiw7z969s4pkmgl"; depends=[]; }; -pmml = derive { name="pmml"; version="1.4.2"; sha256="0588sph67zs58knf4g3fd7c84i2yag81igr882jgbaxhfhxrpk6n"; depends=[XML survival]; }; +pmml = derive { name="pmml"; version="1.4.2"; sha256="0588sph67zs58knf4g3fd7c84i2yag81igr882jgbaxhfhxrpk6n"; depends=[survival XML]; }; pmmlTransformations = derive { name="pmmlTransformations"; version="1.2.2"; sha256="1p31lakhqwk0qhb565j2sjcfsjsx0i5v8kj8779ryjyvy7717m6m"; depends=[]; }; -pmr = derive { name="pmr"; version="1.2.4"; sha256="15yrh533rj5i728nvcpjj3m5wa3jbspnfj941px3mf11h14npxpp"; depends=[]; }; +pmr = derive { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; png = derive { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; pnn = derive { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; }; -poLCA = derive { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[scatterplot3d MASS]; }; +poLCA = derive { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocrm = derive { name="pocrm"; version="0.9"; sha256="0p7a7xm1iyyjgzyi7ik2n34gqc3lsnallrijzdakghb8k5cybm4m"; depends=[dfcrm nnet]; }; pogit = derive { name="pogit"; version="1.0.0"; sha256="0lgvf4d7b2ycz9wryjrd7qymbx1jmj4mw8jl95ax2jylz4li48zf"; depends=[BayesLogit ggplot2 logistf plyr]; }; poibin = derive { name="poibin"; version="1.2"; sha256="12dm1kdalbqy8k7dfldf89v6zw6nd0f73gcdx32xbmry2l2976sa"; depends=[]; }; poilog = derive { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; pointRes = derive { name="pointRes"; version="1.0.2"; sha256="1q9vjvmxs1f5g8f2aj674wk8piqzjqxzdrvxnawgw1pfi66adnms"; depends=[ggplot2 gridExtra plyr TripleR]; }; -pointdensityP = derive { name="pointdensityP"; version="0.1"; sha256="1wa10sp0pxcjyicifz638f89b7ynsy7718qbh2p2gn66lbvjpkhr"; depends=[]; }; -poisDoubleSamp = derive { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp Rcpp]; }; +pointdensityP = derive { name="pointdensityP"; version="0.2.1"; sha256="013vamdh987w56bmz0m6j2xas4ycv1zwxs860rs5z4i55dhgf9kh"; depends=[]; }; +poisDoubleSamp = derive { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; poisson_glm_mix = derive { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; }; poistweedie = derive { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; }; polidata = derive { name="polidata"; version="0.1.0"; sha256="07641v0dnn161kyxx7viplkf8c3r51hd4hd5pzmcph4y4387r01i"; depends=[jsonlite RCurl]; }; -pollstR = derive { name="pollstR"; version="1.2.0"; sha256="1a1qjblxylzpwb1qpy2yyk39022isp8aajds5glspxndapmd4akb"; depends=[httr plyr jsonlite]; }; +pollstR = derive { name="pollstR"; version="1.2.0"; sha256="1a1qjblxylzpwb1qpy2yyk39022isp8aajds5glspxndapmd4akb"; depends=[httr jsonlite plyr]; }; polspline = derive { name="polspline"; version="1.1.9"; sha256="1n08dhwpf53slk1zib491kii54x9h16g3jgr2kxxpyc5xfv4yj26"; depends=[]; }; polyCub = derive { name="polyCub"; version="0.5-2"; sha256="1j28ia53za3sh9q7q1g5bnmlb5mbzf44bcwzv0919lvkw01f2lvj"; depends=[sp spatstat]; }; polySegratio = derive { name="polySegratio"; version="0.2-4"; sha256="05kvj475zhlrmp7rm691cfs28igp4ac2cn2xxf7axx09v1nq33db"; depends=[gdata]; }; -polySegratioMM = derive { name="polySegratioMM"; version="0.6-3"; sha256="1y4kzb1p3aw7ng8mv1hszpvb5hwwxy4vg34mhhk705ki4jy8jgvp"; depends=[polySegratio gtools coda lattice]; }; +polySegratioMM = derive { name="polySegratioMM"; version="0.6-3"; sha256="1y4kzb1p3aw7ng8mv1hszpvb5hwwxy4vg34mhhk705ki4jy8jgvp"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; polyapost = derive { name="polyapost"; version="1.1-6"; sha256="1wk85nl2p9plnaavjdr4bqxxhjc84ynv53bh2v1rmq87jymw40b1"; depends=[boot]; }; -polyclip = derive { name="polyclip"; version="1.3-0"; sha256="05bbj4hy4h1hcb4pzg1mjp8k7k91kqq5rg2x0ns4hcs1h4zrspds"; depends=[]; }; +polyclip = derive { name="polyclip"; version="1.3-2"; sha256="0gsckb5nwfq1w48g67pszk3ndzvj63r8rp7vhh77idizaczkv0r1"; depends=[]; }; polycor = derive { name="polycor"; version="0.7-8"; sha256="0hvww5grl68dff23069smfk3isysyi5n2jm4qmaynrk0m3yvhxwn"; depends=[mvtnorm sfsmisc]; }; polynom = derive { name="polynom"; version="1.3-8"; sha256="05lng88c8cwj65cav31hsrca9nbrqn5rmcz79b17issyk2j0g86p"; depends=[]; }; -polysat = derive { name="polysat"; version="1.3-3"; sha256="02h1lf1bk7hhphfdcql0rmiszp3b3mdfhqfwxj369389dg0q57bd"; depends=[]; }; -polytomous = derive { name="polytomous"; version="0.1.6"; sha256="137qcnncih1lm2wshwrznlcr0k552n0sqhiy73iwis59lg854caa"; depends=[MASS Hmisc lme4]; }; -polywog = derive { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[miscTools foreach Formula glmnet iterators Matrix ncvreg Rcpp stringr Rcpp]; }; +polysat = derive { name="polysat"; version="1.4-0"; sha256="1m0k6lb9fp05zk39fj6c2d6sj659l8g6lj4wngp9y8vwd9cld88k"; depends=[]; }; +polytomous = derive { name="polytomous"; version="0.1.6"; sha256="137qcnncih1lm2wshwrznlcr0k552n0sqhiy73iwis59lg854caa"; depends=[Hmisc lme4 MASS]; }; +polywog = derive { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; -pomp = derive { name="pomp"; version="0.53-5"; sha256="1bfb2b1fdj673b43jnq9pzh36h1hfb8dsarf1dq6pwain7dnqjyp"; depends=[subplex nloptr mvtnorm deSolve coda]; }; +pomp = derive { name="pomp"; version="0.65-1"; sha256="1fxfbqa6lb4x0d4h29in8crhac32aw71chyjyvnhadfqynxhhv4k"; depends=[coda deSolve mvtnorm nloptr subplex]; }; pooh = derive { name="pooh"; version="0.3"; sha256="1wcv77vjjp62c5l1mplnkk4vhy2scjrq96cjx58w5jdj46lban2h"; depends=[]; }; popKorn = derive { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popRange = derive { name="popRange"; version="1.1.3"; sha256="0kkz6va0p8zv3skaqqcpw42014d9x9x4ilx0czz91qf46h61jgb0"; depends=[findpython]; }; @@ -5179,14 +5299,14 @@ popReconstruct = derive { name="popReconstruct"; version="1.0-4"; sha256="14lp0h popbio = derive { name="popbio"; version="2.4"; sha256="12hvxkgbr6snypplxv404sj0ass6ab9i969bb00ipy10gny1w4ww"; depends=[quadprog]; }; popdemo = derive { name="popdemo"; version="0.1-4"; sha256="0syhmm8fnxbsdzj75y7dpahmpf453a6gwp3yljkvmfl0bfv1g1ng"; depends=[expm]; }; popgen = derive { name="popgen"; version="1.0-3"; sha256="00rgfwmmiharfxqlpy21n3jbxwr5whzdg8psqylkjf83ls2myqzm"; depends=[cluster]; }; -popgraph = derive { name="popgraph"; version="1.4"; sha256="1z6w6vj3vl2w10hvzwmkw4d475bqcd6ys92xnn445ag6vpq0cvxq"; depends=[ggplot2 igraph MASS sp Matrix sampling]; }; -poplite = derive { name="poplite"; version="0.99.16"; sha256="0yp1hfda2k6c5x0gbcfxj9h6igzx3ra05xs7g88wjz76yxp3wb6w"; depends=[dplyr DBI igraph lazyeval RSQLite]; }; -poppr = derive { name="poppr"; version="1.1.4"; sha256="13zxcclr8ar3ibjd34n23g0q0rw28gdl2q5477cmpcnypwzxsa71"; depends=[adegenet vegan ggplot2 phangorn ape igraph ade4 pegas reshape2]; }; -popsom = derive { name="popsom"; version="2.3"; sha256="0hdg1nx8mlpqw9aj2q08sb20frsc5jnbvqpfalf5kyvlygnhxdlc"; depends=[som fields]; }; +popgraph = derive { name="popgraph"; version="1.4"; sha256="1z6w6vj3vl2w10hvzwmkw4d475bqcd6ys92xnn445ag6vpq0cvxq"; depends=[ggplot2 igraph MASS Matrix sampling sp]; }; +poplite = derive { name="poplite"; version="0.99.16"; sha256="0yp1hfda2k6c5x0gbcfxj9h6igzx3ra05xs7g88wjz76yxp3wb6w"; depends=[DBI dplyr igraph lazyeval RSQLite]; }; +poppr = derive { name="poppr"; version="1.1.5"; sha256="0whk06gwm171b5j2vcfqi7rdwczv109g7bw2gfnzhz4fm46nhmfk"; depends=[ade4 adegenet ape ggplot2 igraph pegas phangorn reshape2 vegan]; }; +popsom = derive { name="popsom"; version="2.3"; sha256="0hdg1nx8mlpqw9aj2q08sb20frsc5jnbvqpfalf5kyvlygnhxdlc"; depends=[fields som]; }; portes = derive { name="portes"; version="2.1-3"; sha256="0nqh6aync5igmvg7nr5inkv2cwgzd0zi6ky0vvrc3abchqsjm2ck"; depends=[]; }; portfolio = derive { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; }; portfolioSim = derive { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; -potts = derive { name="potts"; version="0.5-2"; sha256="1q4kvknxkrd8qbv8l3vmwrppgzq5bsysnqgm029lx7iys73x4fck"; depends=[]; }; +potts = derive { name="potts"; version="0.5-3"; sha256="1pddz8d4p69wzr51zy3bnbwka1a2dr7civh72qi0rpdsrfm4jxl6"; depends=[]; }; poweRlaw = derive { name="poweRlaw"; version="0.30.2"; sha256="1b4ngqsh5gywksb3y9cj1yjkhxs4081svwgxwf8gpsa7fnl9c0fl"; depends=[VGAM]; }; powell = derive { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; powerAnalysis = derive { name="powerAnalysis"; version="0.2"; sha256="15ff3wnn37sjkiyycgh16g7gwl3l321fbw12kv621dad5bki14jl"; depends=[]; }; @@ -5195,12 +5315,12 @@ powerMediation = derive { name="powerMediation"; version="0.2.4"; sha256="1b4hza powerSurvEpi = derive { name="powerSurvEpi"; version="0.0.6"; sha256="1jsbrj35m296mkk47zcpb2haain6bf23k0xzphnb4sq8f06cmq1p"; depends=[survival]; }; powerpkg = derive { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; }; ppcor = derive { name="ppcor"; version="1.0"; sha256="18l5adjysack86ws61xh89z5xfr83v932a0pn6ad8i8py3nd85fj"; depends=[]; }; -ppiPre = derive { name="ppiPre"; version="1.7"; sha256="12my8xqb3zbiji6z6ip079gh8rkfi700pbbj1acrnrcflxz2wqzx"; depends=[igraph e1071]; }; +ppiPre = derive { name="ppiPre"; version="1.7"; sha256="12my8xqb3zbiji6z6ip079gh8rkfi700pbbj1acrnrcflxz2wqzx"; depends=[AnnotationDbi e1071 GOSemSim igraph]; }; ppls = derive { name="ppls"; version="1.6-1"; sha256="1r3h4pf79bkzpqdvyg33nwjabsqfv7r8a4ziq2zwx5vvm7mdy7pd"; depends=[MASS]; }; ppmlasso = derive { name="ppmlasso"; version="1.1"; sha256="1w13p1wjl1csds1xfc79m44rlym9id9gwnp3q0bzw05f35zbfryg"; depends=[spatstat]; }; pps = derive { name="pps"; version="0.94"; sha256="0sirxpagqc2ghc01zc6q4dk691six9wkgknfbwaqxbxvda3hcmyq"; depends=[]; }; -pqantimalarials = derive { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[reshape2 RColorBrewer plyr shiny]; }; -prLogistic = derive { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot lme4 Hmisc]; }; +pqantimalarials = derive { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; +prLogistic = derive { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; }; prabclus = derive { name="prabclus"; version="2.2-6"; sha256="0qjsxrx6yv338bxm4ki0w9h8hind1l98abdrz828588bwj02jya1"; depends=[MASS mclust]; }; pracma = derive { name="pracma"; version="1.8.3"; sha256="06711w5451gb22667i5dx27ysi4pfagkxdfzg270lxwbymcii6pp"; depends=[]; }; pragma = derive { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; }; @@ -5209,260 +5329,263 @@ praktikum = derive { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh4 prc = derive { name="prc"; version="2014.11-4"; sha256="0r4c0s80fdzc9ifbfy8aaqi7164blqgiv3vbzp9x70c4dfl3lwxx"; depends=[kyotil nlme]; }; precintcon = derive { name="precintcon"; version="2.1"; sha256="0cadia7d2pzhnfw00m4k6qgnajv61hj879pafqnnfs6synbp3px6"; depends=[ggplot2 scales]; }; predfinitepop = derive { name="predfinitepop"; version="1.0"; sha256="1x5ri1kvd1rd9bjp2ygqwl68yp6hyb6aly22bs5kdwv2vn9nlq9w"; depends=[]; }; -predictmeans = derive { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[lme4 nlme ggplot2 lattice pbkrtest plyr]; }; +predictmeans = derive { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; }; predmixcor = derive { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; -prefmod = derive { name="prefmod"; version="0.8-32"; sha256="0v5r195gzbfi6jbqz8r1x2fzj3anqxf4hxaxb9krm9rkwgphrwpi"; depends=[gnm colorspace]; }; +prefmod = derive { name="prefmod"; version="0.8-32"; sha256="0v5r195gzbfi6jbqz8r1x2fzj3anqxf4hxaxb9krm9rkwgphrwpi"; depends=[colorspace gnm]; }; presens = derive { name="presens"; version="1.0.0"; sha256="0hwciahpfp7h7dchn6k64cwjwxzm6cx28b66kv6flz4yzwvqd3pb"; depends=[birk marelac]; }; -preseqR = derive { name="preseqR"; version="1.1.1"; sha256="0hz9a7jji2k55a57l03ajkf0j7yp6dgyapyqr1ip0v18fjpfj98q"; depends=[]; }; +preseqR = derive { name="preseqR"; version="1.2.1"; sha256="1izfykccybnr2pnw043g680wg78hbds6hcfqirqhy1sfn6sf8lz1"; depends=[]; }; prettyGraphs = derive { name="prettyGraphs"; version="2.1.5"; sha256="19jag5cymancxy5lvkj5mkhdbxr37pciqj4vdvmxr82mvw3d75m4"; depends=[]; }; prettyR = derive { name="prettyR"; version="2.1-1"; sha256="173n0cp0mq00y1ydba9m7l3izz04czg9vvadbflfinpi86wvcgq6"; depends=[]; }; -prettyunits = derive { name="prettyunits"; version="1.0.0"; sha256="0lh83pf30hnqcq6ppq8axlyawp0qxpym0lqq8pchh3gq8mgcdz1h"; depends=[magrittr assertthat]; }; -prevR = derive { name="prevR"; version="2.9"; sha256="1h0v52pwhrb9ib61wjqdcand5prc1h205nd2rl5qiiqcnq4xn582"; depends=[sp gstat GenKern rgdal fields]; }; -prevalence = derive { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[rjags coda]; }; -prim = derive { name="prim"; version="1.0.15"; sha256="008a8fm4as5b6j70xxwiipywhbg1wmdbgjz9r7qfnivcpfarxv7f"; depends=[rgl misc3d]; }; +prettyunits = derive { name="prettyunits"; version="1.0.0"; sha256="0lh83pf30hnqcq6ppq8axlyawp0qxpym0lqq8pchh3gq8mgcdz1h"; depends=[assertthat magrittr]; }; +prevR = derive { name="prevR"; version="3.1"; sha256="1x8ssz1k8vdq3zx1qhfhyq371i8s3bam2rd6bm3biha5i8icglh6"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; +prevalence = derive { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; +prim = derive { name="prim"; version="1.0.15"; sha256="008a8fm4as5b6j70xxwiipywhbg1wmdbgjz9r7qfnivcpfarxv7f"; depends=[misc3d rgl]; }; primer = derive { name="primer"; version="1.0"; sha256="0vkq794a9qmz9klgzz7xz35msnmhdaq3f91lcix762wlchz6v7sg"; depends=[deSolve lattice]; }; -primerTree = derive { name="primerTree"; version="1.0.1"; sha256="068j5a2rh8f1h1y7rv2xacnvkn2darzvp1adhi3hqkmwsb3znhjk"; depends=[directlabels gridExtra ggplot2 XML ape httr lubridate plyr scales stringr foreach]; }; +primerTree = derive { name="primerTree"; version="1.0.1"; sha256="068j5a2rh8f1h1y7rv2xacnvkn2darzvp1adhi3hqkmwsb3znhjk"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr scales stringr XML]; }; princurve = derive { name="princurve"; version="1.1-12"; sha256="19fprwpfhgv6n6ann978ilwhh58qi443q25z01qzxml4b5jzsd7w"; depends=[]; }; prinsimp = derive { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; prob = derive { name="prob"; version="0.9-5"; sha256="05skjqimzhnk99z864466dc8qx58pavrky320il91yqyr8b98j8b"; depends=[combinat fAsianOptions hypergeo VGAM]; }; -probFDA = derive { name="probFDA"; version="1.0"; sha256="0aqg3f9n1c30wiqml556xmdcv9yr8rijqvymqk89jdzfc0ri25gh"; depends=[MASS]; }; +probFDA = derive { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; probemod = derive { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; probsvm = derive { name="probsvm"; version="1.00"; sha256="1k0zysym7ncmjy9h7whwi49qsfkpxfk7chfdjrydl6hn6pscis37"; depends=[kernlab]; }; -prodlim = derive { name="prodlim"; version="1.5.1"; sha256="0qjyx4i66cahiqjqff63ljwxdig4lvfs2asxnhkgylwn2kb3lygv"; depends=[survival KernSmooth lava]; }; +prodlim = derive { name="prodlim"; version="1.5.1"; sha256="0qjyx4i66cahiqjqff63ljwxdig4lvfs2asxnhkgylwn2kb3lygv"; depends=[KernSmooth lava survival]; }; profdpm = derive { name="profdpm"; version="3.3"; sha256="07lhjavrx4fa5950w928mfpddmmnmvdapl5n6mv49m8h3bxs4nmy"; depends=[]; }; profileModel = derive { name="profileModel"; version="0.5-9"; sha256="1p9b9jr5842im195d60ja82pp7vbk85vs8b0r3fnf62j4b92aky9"; depends=[]; }; -profileR = derive { name="profileR"; version="0.2-1"; sha256="1hcydy7hqjac9mvbaim2g75ab1ziyvpbrkb4k21966m54zjk9kka"; depends=[ggplot2 MASS RColorBrewer reshape plyr]; }; -profr = derive { name="profr"; version="0.3.1"; sha256="1w06mm89apggy6wc273b2nsp95smajr8sf3dwshykivv7mhkxs5d"; depends=[stringr plyr]; }; +profileR = derive { name="profileR"; version="0.2-1"; sha256="1hcydy7hqjac9mvbaim2g75ab1ziyvpbrkb4k21966m54zjk9kka"; depends=[ggplot2 MASS plyr RColorBrewer reshape]; }; +profr = derive { name="profr"; version="0.3.1"; sha256="1w06mm89apggy6wc273b2nsp95smajr8sf3dwshykivv7mhkxs5d"; depends=[plyr stringr]; }; proftools = derive { name="proftools"; version="0.1-0"; sha256="1wzkrz7zr2pjw5id2sp6jdqm5pgrrh35zfwjrkr6mac22lniq4bv"; depends=[]; }; prognosticROC = derive { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; +progress = derive { name="progress"; version="1.0.2"; sha256="1dpcfvdg1rf0fd4whcn7k09x70s7jhz8p7nqkm9p13b4nhil76sj"; depends=[prettyunits R6]; }; proj4 = derive { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; }; -propOverlap = derive { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[]; }; -propagate = derive { name="propagate"; version="1.0-4"; sha256="18vyh4i4zlsmggfyd4w0zrznk75m84k08p1qa9crind04n5581j1"; depends=[MASS tmvtnorm Rcpp ff minpack_lm Rcpp]; }; -prospectr = derive { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[RcppArmadillo foreach iterators Rcpp Rcpp RcppArmadillo]; }; +propOverlap = derive { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; +propagate = derive { name="propagate"; version="1.0-4"; sha256="18vyh4i4zlsmggfyd4w0zrznk75m84k08p1qa9crind04n5581j1"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; +prospectr = derive { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; }; protViz = derive { name="protViz"; version="0.2.9"; sha256="0kn2dd3za8mmb6476v3wqnymhihyavw2qsh98i4q3xdiz1g77vql"; depends=[Rcpp]; }; proteomicdesign = derive { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; -proteomics = derive { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[plyr reshape2 ggplot2 foreach]; }; -protiq = derive { name="protiq"; version="1.2"; sha256="1d5wr9w540a79i57nr0arn5xg7s6jhhy5nrgsk8r3ljidld2s2sa"; depends=[mvtnorm]; }; +proteomics = derive { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; }; +protiq = derive { name="protiq"; version="1.2"; sha256="1d5wr9w540a79i57nr0arn5xg7s6jhhy5nrgsk8r3ljidld2s2sa"; depends=[graph mvtnorm RBGL]; }; proto = derive { name="proto"; version="0.3-10"; sha256="03mvzi529y6kjcp9bkpk7zlgpcakb3iz73hca6rpjy14pyzl3nfh"; depends=[]; }; protoclass = derive { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; protoclust = derive { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; }; protr = derive { name="protr"; version="0.5-1"; sha256="1ji0vpy9rrrvbsfwi4823ywi5zbwl57zw1glxllxgwyv9l6v4bpb"; depends=[]; }; +provenance = derive { name="provenance"; version="0.2"; sha256="07wgfb5hmdd4nddl42wpqsx9vzayvngrgmcsssilbm5qbrvgv4sr"; depends=[MASS shapes smacof vegan]; }; proxy = derive { name="proxy"; version="0.4-14"; sha256="1ijip1jmpm7dg11yv2rjcpkpg4p30m9acddbn49fbss9kcpl5b5i"; depends=[]; }; -pryr = derive { name="pryr"; version="0.1"; sha256="1vp63v1l4myahmmbphc043x1kpmvvdhs6dr640dxi0napvkdqlq6"; depends=[stringr codetools Rcpp Rcpp]; }; +pryr = derive { name="pryr"; version="0.1.1"; sha256="00j81iwf2mka1a953nrgar0r4wcfi4n5nl8pidnhw51lyh2285d8"; depends=[codetools Rcpp stringr]; }; psData = derive { name="psData"; version="0.1.2"; sha256="0w8kzivqrh1b6gq803rfd10drxdwgy0cxb5sff273m6jxzak52f2"; depends=[countrycode DataCombine foreign xlsx]; }; -psbcGroup = derive { name="psbcGroup"; version="1.1"; sha256="17kpxddvy9m87i9r1hazc8g6mm35p1452ngz80byhgw9p0jkvn5p"; depends=[LearnBayes SuppDists mvtnorm]; }; -pscl = derive { name="pscl"; version="1.4.9"; sha256="15fij6n43hry1plgzrak9vmk9xbb7n4v2frv997bhwxbs6jhhfhf"; depends=[MASS lattice]; }; -psd = derive { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a84fq4yhp472n4k8wd73mkdn6"; depends=[Rcpp RColorBrewer signal zoo Rcpp RcppArmadillo]; }; -pse = derive { name="pse"; version="0.4.0"; sha256="1ln6b5ch99fmmcsfn8m8fl4ir7cadwq5ckggwizw9cbllw3drv0b"; depends=[Hmisc boot]; }; -pseudo = derive { name="pseudo"; version="1.1"; sha256="0dcx6b892cic47rwzazsbnsicpgyrbdcndr3q5s6z0j1b41lzknd"; depends=[KMsurv geepack]; }; -psgp = derive { name="psgp"; version="0.3-6"; sha256="0h9gyadfy0djj32pgwhg8vy2gfn7i7yj5nnsm6pvfypc3k71s2wf"; depends=[intamap automap gstat Rcpp RcppArmadillo]; }; -psidR = derive { name="psidR"; version="1.2"; sha256="14cpxk7z0inrpvhsdb3z6r5nrpyb4v8bv77mygxcf51rxihigzvj"; depends=[data_table RCurl foreign SAScii]; }; +psbcGroup = derive { name="psbcGroup"; version="1.1"; sha256="17kpxddvy9m87i9r1hazc8g6mm35p1452ngz80byhgw9p0jkvn5p"; depends=[LearnBayes mvtnorm SuppDists]; }; +pscl = derive { name="pscl"; version="1.4.9"; sha256="15fij6n43hry1plgzrak9vmk9xbb7n4v2frv997bhwxbs6jhhfhf"; depends=[lattice MASS]; }; +psd = derive { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a84fq4yhp472n4k8wd73mkdn6"; depends=[RColorBrewer Rcpp RcppArmadillo signal zoo]; }; +pse = derive { name="pse"; version="0.4.0"; sha256="1ln6b5ch99fmmcsfn8m8fl4ir7cadwq5ckggwizw9cbllw3drv0b"; depends=[boot Hmisc]; }; +pseudo = derive { name="pseudo"; version="1.1"; sha256="0dcx6b892cic47rwzazsbnsicpgyrbdcndr3q5s6z0j1b41lzknd"; depends=[geepack KMsurv]; }; +psgp = derive { name="psgp"; version="0.3-6"; sha256="0h9gyadfy0djj32pgwhg8vy2gfn7i7yj5nnsm6pvfypc3k71s2wf"; depends=[automap gstat intamap Rcpp RcppArmadillo]; }; +psidR = derive { name="psidR"; version="1.3"; sha256="1jdxbjvc309b1bs81v57kc1g7lgfdz84bfakh9qwh8wgjqbjr06i"; depends=[data_table foreign RCurl SAScii]; }; pso = derive { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; }; pspearman = derive { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; pspline = derive { name="pspline"; version="1.0-16"; sha256="170apwfv2lbf2rggzzynrf9vi2mr0y15sm4zy8djxxpzv217iaf7"; depends=[]; }; -pssm = derive { name="pssm"; version="1.0"; sha256="1af5zvznh04vz5psbmq3xxclm2zh4gl4gxi1ps6aqmiqjpm57dwq"; depends=[MASS abind numDeriv MHadaptive]; }; +pssm = derive { name="pssm"; version="1.0"; sha256="1af5zvznh04vz5psbmq3xxclm2zh4gl4gxi1ps6aqmiqjpm57dwq"; depends=[abind MASS MHadaptive numDeriv]; }; psy = derive { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; psych = derive { name="psych"; version="1.5.4"; sha256="04n0rfr7i5yhr5ph0fdp9yrmc8m2i4zbf7bh5pvx7s7lfs08z84a"; depends=[mnormt]; }; -psychometric = derive { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme multilevel nlme]; }; -psychomix = derive { name="psychomix"; version="1.1-2"; sha256="0kah36ps9d0dr594vfk9fy2ag2grknjjgvmkf9vzm0ny52cisc72"; depends=[flexmix psychotools lattice Formula modeltools]; }; +psychometric = derive { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; +psychomix = derive { name="psychomix"; version="1.1-2"; sha256="0kah36ps9d0dr594vfk9fy2ag2grknjjgvmkf9vzm0ny52cisc72"; depends=[flexmix Formula lattice modeltools psychotools]; }; psychotools = derive { name="psychotools"; version="0.4-0"; sha256="17qwlxj00i0aqwf39hwr6mmxa6jy0j6dxfrp9p1xskbgi5cnvslk"; depends=[]; }; -psychotree = derive { name="psychotree"; version="0.15-0"; sha256="08mq4gssrhydn106zm6xxwb1kk43hdzw6jqclx1ya0g8xfri2rrd"; depends=[partykit psychotools Formula]; }; +psychotree = derive { name="psychotree"; version="0.15-0"; sha256="08mq4gssrhydn106zm6xxwb1kk43hdzw6jqclx1ya0g8xfri2rrd"; depends=[Formula partykit psychotools]; }; psyphy = derive { name="psyphy"; version="0.1-9"; sha256="1ndc6sy662wj2qfx7r97crlqjd8fdkfvfy59qmf34bcbzbg33riz"; depends=[]; }; -psytabs = derive { name="psytabs"; version="0.5"; sha256="0jcsv771ndf0fv76982rbv099ii4l55a8bj1mhgr54838ins0gg7"; depends=[psych plyr rtf R2HTML mokken lavaan semTools]; }; +psytabs = derive { name="psytabs"; version="0.5"; sha256="0jcsv771ndf0fv76982rbv099ii4l55a8bj1mhgr54838ins0gg7"; depends=[lavaan mokken plyr psych R2HTML rtf semTools]; }; pt = derive { name="pt"; version="1.0"; sha256="0hjijfmc9dip3ys8xg44w0fwvyzyjyjl9hpwm7j2nzg3plv6i1fz"; depends=[]; }; ptinpoly = derive { name="ptinpoly"; version="2.4"; sha256="1jbj8z7lqg7w1mqdh230qjaydx2yb6ffgkc39k7dx8xl30g00i5b"; depends=[misc3d]; }; ptw = derive { name="ptw"; version="1.0-7"; sha256="195pa6hj3y9spyc7yxfgr8alkp48a7ccnyp64r6fyjwj6ds08b64"; depends=[]; }; -pubmed_mineR = derive { name="pubmed.mineR"; version="1.0.3.1"; sha256="1q1y3sshv5c56qgbbrrlnb1nhg052n8g2vrx32vhg304rqircxkm"; depends=[RCurl XML boot R2HTML]; }; +pubmed_mineR = derive { name="pubmed.mineR"; version="1.0.3.1"; sha256="1q1y3sshv5c56qgbbrrlnb1nhg052n8g2vrx32vhg304rqircxkm"; depends=[boot R2HTML RCurl XML]; }; pullword = derive { name="pullword"; version="0.1"; sha256="1mxv63q2nfnhxcn8m17d40w792l1i7diykg6h0i42pj0rsa4ww36"; depends=[RCurl]; }; -pumilioR = derive { name="pumilioR"; version="1.3"; sha256="1zmcdp978p73bh9fdshxlrzgfg18j007xgxgr439rq90bwiwva6j"; depends=[XML RCurl]; }; +pumilioR = derive { name="pumilioR"; version="1.3"; sha256="1zmcdp978p73bh9fdshxlrzgfg18j007xgxgr439rq90bwiwva6j"; depends=[RCurl XML]; }; pushoverr = derive { name="pushoverr"; version="0.1.4"; sha256="1qa7cajgri3dwlvbpwn244m92n3q3apl4m5420mzsa9ngnmm8hj1"; depends=[httr]; }; -pvar = derive { name="pvar"; version="2.2"; sha256="1f58czx14shd02ijyxhn46yrvfh44wrpifja8cjv522gbkrcr7yf"; depends=[Rcpp Rcpp]; }; +pvar = derive { name="pvar"; version="2.2"; sha256="1f58czx14shd02ijyxhn46yrvfh44wrpifja8cjv522gbkrcr7yf"; depends=[Rcpp]; }; pvclass = derive { name="pvclass"; version="1.2"; sha256="099lk0x24h7g77lpr22mzpl22q2b0nr466ljgm6jcdyjbkzgx237"; depends=[Matrix]; }; pvclust = derive { name="pvclust"; version="1.3-2"; sha256="0w9cxr0bc591icbyn8239f76ypb2nwv9fa5b1ix05wh55d1h0rgc"; depends=[]; }; pvrank = derive { name="pvrank"; version="1.0"; sha256="0kvy0b1x7q23pjw2ckyqzyh3ihqnbrd067v85l9rvf0pxyycqyhx"; depends=[Rmpfr]; }; -pvsR = derive { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[XML nnet httr]; }; +pvsR = derive { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; pwr = derive { name="pwr"; version="1.1-2"; sha256="1czganj70qszz32yx2jprhr8h9a2lpg67gwfwfjf8kpk97qvkalj"; depends=[]; }; pwt = derive { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt8 = derive { name="pwt8"; version="8.0-0"; sha256="12cgyban6waj0cxz9gb35s5v0v29rmx67ipzalzdnrjp5nsmy431"; depends=[]; }; -pxR = derive { name="pxR"; version="0.40.0"; sha256="08s62kzdgak7mjzyhd32qn93q5l7sj01vhsk7fjg9nxjvm78xxka"; depends=[stringr reshape2 RJSONIO plyr]; }; -pxweb = derive { name="pxweb"; version="0.5.5"; sha256="1rrsxis2fi1x90gj251phbrz3bbl7yyc39n20lk2rln14acdhfsy"; depends=[data_table plyr stringr RJSONIO httr]; }; -pycno = derive { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[sp maptools rgeos]; }; +pxR = derive { name="pxR"; version="0.40.0"; sha256="08s62kzdgak7mjzyhd32qn93q5l7sj01vhsk7fjg9nxjvm78xxka"; depends=[plyr reshape2 RJSONIO stringr]; }; +pxweb = derive { name="pxweb"; version="0.5.54"; sha256="17vg480b54mcv9jbkci1rrn6zi90zzw098xzrcw3kvp583as9mar"; depends=[data_table httr plyr RJSONIO stringr]; }; +pycno = derive { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyramid = derive { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; }; qLearn = derive { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qPCR_CT = derive { name="qPCR.CT"; version="1.1"; sha256="19j41fsd2m7p2nxi2h2mj43rjxx6sz2jpf4sk0bfvl1gyj0iz3hi"; depends=[RColorBrewer]; }; -qVarSel = derive { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp Rcpp]; }; -qat = derive { name="qat"; version="0.73"; sha256="1fff4sv1n3i0gfgj83sy4pygxalifdycm27hsw51r72n86049cdc"; depends=[ncdf XML gdata moments boot fields gplots]; }; +qVarSel = derive { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; }; +qat = derive { name="qat"; version="0.73"; sha256="1fff4sv1n3i0gfgj83sy4pygxalifdycm27hsw51r72n86049cdc"; depends=[boot fields gdata gplots moments ncdf XML]; }; qcc = derive { name="qcc"; version="2.6"; sha256="0bsdgpsqvkz2w1qanxwx8kvrpkpzs9jgw8ml2lyqhmhqbxyg125r"; depends=[MASS]; }; qclust = derive { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; }; qcr = derive { name="qcr"; version="0.1-18"; sha256="16dfda3rwivsdhp7j5izzbk2rzwfabfmxgpq4kjc4h7r90n2vly2"; depends=[qcc]; }; -qdap = derive { name="qdap"; version="2.2.0"; sha256="0lbc38x4gvh6q2sb6d524ksfhpvxm8knfy85bmwbf6d3q4s0b6q4"; depends=[ggplot2 qdapDictionaries qdapRegex qdapTools RColorBrewer chron dplyr gdata gender gridExtra igraph NLP openNLP plotrix RCurl reports reshape2 scales stringdist tm venneuler wordcloud xlsx XML]; }; -qdapDictionaries = derive { name="qdapDictionaries"; version="1.0.5"; sha256="1nk432nyw4srz92zsikv830dpjxflrrgjhq5va6pd3ifpy3nzdrw"; depends=[]; }; +qdap = derive { name="qdap"; version="2.2.1"; sha256="0gix6l0h6q0c2pl38d3qp3pzs1m3j96rcb9n6q9k1nh0002vfnsg"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; +qdapDictionaries = derive { name="qdapDictionaries"; version="1.0.6"; sha256="1icivvsi33494ycd7vfqm9zx2g2rc1m3dygs3bi0ndi798z1cvx2"; depends=[]; }; qdapRegex = derive { name="qdapRegex"; version="0.3.2"; sha256="1hygkck4wilm2f2cg5q82a867608j3dqp7wqj3kbnh5a970lw41y"; depends=[stringi]; }; qdapTools = derive { name="qdapTools"; version="1.1.0"; sha256="0k3mvcjj2fg2v3z8jm2z02zmrpgjpwbpcaanmp2vlykqzacsrl52"; depends=[chron data_table RCurl XML]; }; qdm = derive { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; -qgraph = derive { name="qgraph"; version="1.3.1"; sha256="1wmpsgmzl9qg4vjjjlbxqav3ck7p26gidsqv3qryx56jx54164wg"; depends=[psych ellipse lavaan sem plyr Hmisc igraph jpeg png colorspace Matrix sna corpcor reshape2 ggplot2 glasso huge fdrtool d3Network ggm gtools]; }; -qgtools = derive { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[Matrix MASS]; }; +qgraph = derive { name="qgraph"; version="1.3.1"; sha256="1wmpsgmzl9qg4vjjjlbxqav3ck7p26gidsqv3qryx56jx54164wg"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; +qgtools = derive { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; qicharts = derive { name="qicharts"; version="0.1.3"; sha256="1f9flcz4w5s6rahk2bkddwjwba72q8himgaqdgza8phaksdzm58v"; depends=[lattice latticeExtra]; }; qiimer = derive { name="qiimer"; version="0.9.2"; sha256="08625hz2n7yk9zk1k9sa46n2ggbw5qs0mlqkmzyjjh3qlnb1354a"; depends=[pheatmap]; }; qlcMatrix = derive { name="qlcMatrix"; version="0.9.4"; sha256="1nkk712h9nnaqshw766mvk72w6gq9abyry4q1a0ghn0naq3gyl0s"; depends=[Matrix slam]; }; qlspack = derive { name="qlspack"; version="2.2"; sha256="0b9sqvnvldhd8vymajrbql0vn70rml13jgsq5ihm6skzq5qms7y6"; depends=[geepack]; }; qmap = derive { name="qmap"; version="1.0-3"; sha256="1c7qvmd5whi446nzssqvhz1j2mpx22nlzzdrcql84v18ry0dr18m"; depends=[fitdistrplus]; }; -qmethod = derive { name="qmethod"; version="1.3.1"; sha256="01yj8fr6d615lydb7111lb9qhkg1c6xy8gp2225as53mzbsc890i"; depends=[psych GPArotation digest knitr xtable]; }; +qmethod = derive { name="qmethod"; version="1.3.1"; sha256="01yj8fr6d615lydb7111lb9qhkg1c6xy8gp2225as53mzbsc890i"; depends=[digest GPArotation knitr psych xtable]; }; qmrparser = derive { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; }; -qpcR = derive { name="qpcR"; version="1.4-0"; sha256="029qhncfiicb3picay5yd42g6qi0x981r6mgd67vdx71cac9fp59"; depends=[MASS minpack_lm rgl robustbase Matrix]; }; +qpcR = derive { name="qpcR"; version="1.4-0"; sha256="029qhncfiicb3picay5yd42g6qi0x981r6mgd67vdx71cac9fp59"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qqman = derive { name="qqman"; version="0.1.2"; sha256="024ln79hig5ggcyc3466r6y6zx2hwy2698x65cha5zpm51kq1abs"; depends=[]; }; qqtest = derive { name="qqtest"; version="1.0"; sha256="12hw4d2gddb4fgdi986pyqgvlpxgk5lngfp989hq2a830kyxz1ds"; depends=[MASS]; }; -qrLMM = derive { name="qrLMM"; version="1.1"; sha256="1yg9ph6jy0sn4d82vn4v7yy3mqczbnzsq8qqp9dw38vh2456rmf2"; depends=[nlme matrixcalc mvtnorm ghyp quantreg psych]; }; -qrNLMM = derive { name="qrNLMM"; version="1.0"; sha256="0vlinc3bggapff29dyz14vn122gy6aq3rp38v2bpnxfkbpj10lvy"; depends=[matrixcalc mvtnorm ghyp quantreg psych ald]; }; -qrfactor = derive { name="qrfactor"; version="1.4"; sha256="0f02lh8zrc36slwqy11x03yzfdy94p1lk5jar9h5cwa1dvi5k8gm"; depends=[mvoutlier mgraph pvclust cluster maptools]; }; +qrLMM = derive { name="qrLMM"; version="1.1"; sha256="1yg9ph6jy0sn4d82vn4v7yy3mqczbnzsq8qqp9dw38vh2456rmf2"; depends=[ghyp matrixcalc mvtnorm nlme psych quantreg]; }; +qrNLMM = derive { name="qrNLMM"; version="1.0"; sha256="0vlinc3bggapff29dyz14vn122gy6aq3rp38v2bpnxfkbpj10lvy"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; +qrfactor = derive { name="qrfactor"; version="1.4"; sha256="0f02lh8zrc36slwqy11x03yzfdy94p1lk5jar9h5cwa1dvi5k8gm"; depends=[cluster maptools mgraph mvoutlier pvclust]; }; +qrmtools = derive { name="qrmtools"; version="0.0-1"; sha256="0xjgb8clyhlrl4qdbhi85m97cbhab5q5sy2zr87gamz2y365alpr"; depends=[xts]; }; qrng = derive { name="qrng"; version="0.0-2"; sha256="0rs4dggvrlc3bi0wgkjw8lhv4b3jpckcfkqzsaz0j46kf6vfgfw1"; depends=[]; }; qrnn = derive { name="qrnn"; version="1.1.2"; sha256="01wsz9qcdiayi7gsyy2y09jyyapanyhlc4pdyman2f7z5nl9yv9i"; depends=[]; }; -qtbase = derive { name="qtbase"; version="1.0.4"; sha256="02yilvywkcqn3y9ayix18cgkwhi0gh69fl3fcw28fs2zxf1hqy75"; depends=[]; }; +qtbase = derive { name="qtbase"; version="1.0.9"; sha256="1jffdkv6jwxqljx6jd5n27wk9r5sg0llpf34nlr29h4shi3f2f8z"; depends=[]; }; qte = derive { name="qte"; version="1.0.1"; sha256="15y6n0c9jinfz7hmm107palgy8fl15bc71gw0bcd3bawpydkrq2w"; depends=[]; }; qtl = derive { name="qtl"; version="1.36-6"; sha256="1qn8fv0s2934pbds2962isr8y96s2k0jlh6y27rz21qlpryrbijb"; depends=[]; }; qtlDesign = derive { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; -qtlbim = derive { name="qtlbim"; version="2.0.7"; sha256="0nm7ky5bkzhmfr41fs1pvl51i2df1fz11j55q74ma2wzki5adfps"; depends=[qtl lattice coda MASS]; }; qtlbook = derive { name="qtlbook"; version="0.18-1"; sha256="09b4w7kqdlmpf0vsjgwbi9sraafzchvk18yzrx72gs151v03nxlm"; depends=[qtl]; }; -qtlhot = derive { name="qtlhot"; version="0.9.0"; sha256="1043rksqqzgmr7q03j18wxgm706prqxq9ki9b9p2dxvc62vfcfih"; depends=[qtl lattice corpcor mnormt]; }; +qtlhot = derive { name="qtlhot"; version="0.9.0"; sha256="1043rksqqzgmr7q03j18wxgm706prqxq9ki9b9p2dxvc62vfcfih"; depends=[corpcor lattice mnormt qtl]; }; qtlmt = derive { name="qtlmt"; version="0.1-3"; sha256="01ql0fr2mxl8a8nd6lpig5j8vznv594ygn6bj6d31gj15r5rs8fs"; depends=[]; }; -qtlnet = derive { name="qtlnet"; version="1.3.6"; sha256="044a2p3mpp203kb85s2fr3qiyypm461lrzxkfi0hnzq44qqba169"; depends=[qtl igraph sem pcalg]; }; -qtpaint = derive { name="qtpaint"; version="0.9.0"; sha256="06yqakg134mks8q7a40f5knjpcm1k2wdzchs0ywvfpwvpwgwig01"; depends=[qtbase qtbase qtbase]; }; -qtutils = derive { name="qtutils"; version="0.1-3"; sha256="018k9v3mab1mfcjh4mv1a1iish50fwdhb51mqn17k6fyrrrv7vs5"; depends=[qtbase qtbase qtbase]; }; +qtlnet = derive { name="qtlnet"; version="1.3.6"; sha256="044a2p3mpp203kb85s2fr3qiyypm461lrzxkfi0hnzq44qqba169"; depends=[graph igraph pcalg qtl sem]; }; +qtpaint = derive { name="qtpaint"; version="0.9.0"; sha256="06yqakg134mks8q7a40f5knjpcm1k2wdzchs0ywvfpwvpwgwig01"; depends=[qtbase]; }; +qtutils = derive { name="qtutils"; version="0.1-3"; sha256="018k9v3mab1mfcjh4mv1a1iish50fwdhb51mqn17k6fyrrrv7vs5"; depends=[qtbase]; }; quad = derive { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; quadprog = derive { name="quadprog"; version="1.5-5"; sha256="0jg3r6abmhp8r9vkbhpx9ldjfw6vyl1m4c5vwlyjhk1mi03656fr"; depends=[]; }; -quadrupen = derive { name="quadrupen"; version="0.2-4"; sha256="0gs565zi5qkccr9f65smvzgq2d97p7i5inksp2492bjvqhsbagxj"; depends=[Rcpp ggplot2 Matrix reshape2 scales Rcpp RcppArmadillo]; }; +quadrupen = derive { name="quadrupen"; version="0.2-4"; sha256="0gs565zi5qkccr9f65smvzgq2d97p7i5inksp2492bjvqhsbagxj"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; qualCI = derive { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive { name="qualV"; version="0.3-1"; sha256="0p4yfgq2wxwis2w28mdb61x6hzm6sb9bczjdm9bc05ga5srr3sdd"; depends=[KernSmooth]; }; qualityTools = derive { name="qualityTools"; version="1.54"; sha256="0ylp5a49b4q4max4yz30ia7r12s4jrvqn9zx5a21qcnpinf8b932"; depends=[]; }; quantchem = derive { name="quantchem"; version="0.13"; sha256="1ga5xa7lsk04flfp1syjzpnvj3i2ypzh1m49vq1xkdwpm6axdy8n"; depends=[MASS outliers]; }; -quanteda = derive { name="quanteda"; version="0.7.2"; sha256="0mpalvnhqkmqczpc1qaipvqxlyqfli510p81h6mf0sq9f82nzmks"; depends=[Matrix data_table SnowballC wordcloud proxy Rcpp ca Rcpp RcppArmadillo]; }; +quanteda = derive { name="quanteda"; version="0.7.2-1"; sha256="1j6hjcr3sd1xymzznvz1r2z6rs3m6vp3ji5y6dqq5qr18g1bi4cm"; depends=[ca data_table Matrix proxy Rcpp RcppArmadillo SnowballC wordcloud]; }; quantification = derive { name="quantification"; version="0.1.0"; sha256="0987389rr21fl3khgd3a1yq5821hljwm0xlyxgjy1km5hj81diap"; depends=[car]; }; -quantmod = derive { name="quantmod"; version="0.4-4"; sha256="0a8gr2qb2b2w58zyxbyz3dbprmyiwf5cd62xqv4d3rk29l7vk4n8"; depends=[xts zoo TTR]; }; +quantmod = derive { name="quantmod"; version="0.4-4"; sha256="0a8gr2qb2b2w58zyxbyz3dbprmyiwf5cd62xqv4d3rk29l7vk4n8"; depends=[TTR xts zoo]; }; quantreg = derive { name="quantreg"; version="5.11"; sha256="0pyc1zknkjyvaix76bn84l90zavajsc7jx17x0zanllnh34siizp"; depends=[SparseM]; }; -quantregForest = derive { name="quantregForest"; version="0.2-3"; sha256="06c73f66nnw3vd2dv8h5skzyxbr89i3pyprbb0if721h5d7pm0s7"; depends=[randomForest]; }; +quantregForest = derive { name="quantregForest"; version="1.0"; sha256="11mnb32vz6m2g7nggip2y251rkwn6wr7jwdh0hqvl0pgalmipb84"; depends=[randomForest]; }; quantregGrowth = derive { name="quantregGrowth"; version="0.3-0"; sha256="0iyqd4gf780xqj2gcinlx0h6r6wy4vc7sp8r4qa1s638qcrp3qwa"; depends=[quantreg]; }; -quantspec = derive { name="quantspec"; version="1.0-3"; sha256="1g4arhhybw021dnz0imdfwwj328gc8yw75cgnnd00skdc402cfhk"; depends=[quantreg abind zoo snowfall Rcpp Rcpp]; }; -questionr = derive { name="questionr"; version="0.4.3"; sha256="13mmmjxg9vkn53dp9hng330bkilzdf2zqisgs21ng08b6p9dv7n4"; depends=[shiny highr classInt htmltools]; }; -queueing = derive { name="queueing"; version="0.2.4"; sha256="03zz5437bkai2bmk9hcwf09cmyrnbs2cxlafbcf1lp6iahj66il9"; depends=[]; }; -quickpsy = derive { name="quickpsy"; version="0.1.0"; sha256="1p1rhv69bh842r77dxn73l0k2lwa5vj2xc27m470pjygap2zaqv0"; depends=[boot DEoptim dplyr ggplot2 tidyr MPDiR]; }; -quint = derive { name="quint"; version="1.0"; sha256="19dxrssy4dw7v3s4hhhy6yilbc7zb6pvcnh3mm1z6vv5a1wfr245"; depends=[partykit Formula rpart]; }; -quipu = derive { name="quipu"; version="1.9.0"; sha256="1py1qpbwp2smr5di8b3zmzxxhchfmr5qfhqkdiqig28mcnqcmp5n"; depends=[agricolae stringr pixmap shiny xtable]; }; +quantspec = derive { name="quantspec"; version="1.0-3"; sha256="1g4arhhybw021dnz0imdfwwj328gc8yw75cgnnd00skdc402cfhk"; depends=[abind quantreg Rcpp snowfall zoo]; }; +questionr = derive { name="questionr"; version="0.4.3"; sha256="13mmmjxg9vkn53dp9hng330bkilzdf2zqisgs21ng08b6p9dv7n4"; depends=[classInt highr htmltools shiny]; }; +queueing = derive { name="queueing"; version="0.2.5"; sha256="11a44aqq0s50vdbn7rhijajqw1rrcj1qnyjjd8dn1cc5nvq141k7"; depends=[]; }; +quickpsy = derive { name="quickpsy"; version="0.1.0"; sha256="1p1rhv69bh842r77dxn73l0k2lwa5vj2xc27m470pjygap2zaqv0"; depends=[boot DEoptim dplyr ggplot2 MPDiR tidyr]; }; +quint = derive { name="quint"; version="1.0"; sha256="19dxrssy4dw7v3s4hhhy6yilbc7zb6pvcnh3mm1z6vv5a1wfr245"; depends=[Formula partykit rpart]; }; +quipu = derive { name="quipu"; version="1.9.0"; sha256="1py1qpbwp2smr5di8b3zmzxxhchfmr5qfhqkdiqig28mcnqcmp5n"; depends=[agricolae pixmap shiny stringr xtable]; }; qvcalc = derive { name="qvcalc"; version="0.8-9"; sha256="1ysbsm65n05vypvvpsbdfbrb60gij50vsmybzi4405g5z2ds1j72"; depends=[]; }; qwraps2 = derive { name="qwraps2"; version="0.1.1"; sha256="1kikw92i9l06rxwlnp2sa17wkd8xshryx1rbk4qjzf4yfgmgbkbd"; depends=[dplyr ggplot2]; }; r2d2 = derive { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; -r2dRue = derive { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[rgdal sp matrixStats]; }; +r2dRue = derive { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; r2lh = derive { name="r2lh"; version="0.7"; sha256="1kkyjv9x2klrjnaaw4a16sxdfqmpp9s5mlclzlczlqjypbf2aa6d"; depends=[]; }; r2stl = derive { name="r2stl"; version="1.0.0"; sha256="18lvnxr40cm450s8qh09c3cnkl1hg83jhmv1gzsv6nkjrq4mj5wh"; depends=[]; }; r4ss = derive { name="r4ss"; version="1.22.1"; sha256="1rjnglwa3i8rlzyqqr5h8yh7vglrh8zpd3829qcc1vfi4swcwwqw"; depends=[coda corpcor gplots gtools maps pso RCurl]; }; -rARPACK = derive { name="rARPACK"; version="0.7-0"; sha256="1r1ypa56wkxvll9yqr50f3x2krimi22lwyrkksf5zf6laksmiq1w"; depends=[Matrix Rcpp Rcpp RcppEigen]; }; -rAltmetric = derive { name="rAltmetric"; version="0.6"; sha256="0ym8p9rq64ig3vlaimk38rmc2h1315bphx7v1rd6g4gypgx4ym15"; depends=[plyr RCurl reshape2 png ggplot2 RJSONIO]; }; +rARPACK = derive { name="rARPACK"; version="0.7-0"; sha256="1r1ypa56wkxvll9yqr50f3x2krimi22lwyrkksf5zf6laksmiq1w"; depends=[Matrix Rcpp RcppEigen]; }; +rAltmetric = derive { name="rAltmetric"; version="0.6"; sha256="0ym8p9rq64ig3vlaimk38rmc2h1315bphx7v1rd6g4gypgx4ym15"; depends=[ggplot2 plyr png RCurl reshape2 RJSONIO]; }; rAverage = derive { name="rAverage"; version="0.4-13"; sha256="0yfy81p99a3cb31cagxdvby7l2hcc60g3mnfizd9nvgamdmw08sy"; depends=[]; }; -rAvis = derive { name="rAvis"; version="0.1.2"; sha256="0m5dl8as0vmmsd3j0z0xwcpq55yfax42fa67qn4lsnaglyqmd4lm"; depends=[stringr XML RCurl scrapeR gdata scales rgdal maptools raster sp]; }; +rAvis = derive { name="rAvis"; version="0.1.2"; sha256="0m5dl8as0vmmsd3j0z0xwcpq55yfax42fa67qn4lsnaglyqmd4lm"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; }; rBeta2009 = derive { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; rCMA = derive { name="rCMA"; version="1.1"; sha256="0dswshg80hbgcib5x9w791sh71q5s4435q8sm9dh170v4ngbax0w"; depends=[]; }; -rCUR = derive { name="rCUR"; version="1.3"; sha256="1f38xbc5n91k2y88cg0sv1z2p4g5vl7v2k1024f42f7526g2p2lx"; depends=[MASS Matrix lattice]; }; -rCarto = derive { name="rCarto"; version="0.8"; sha256="08813l4xfahjyn0jv48q8f6sy402n78dqsg01192pxl2dfc2i9ry"; depends=[RColorBrewer maptools classInt]; }; +rCUR = derive { name="rCUR"; version="1.3"; sha256="1f38xbc5n91k2y88cg0sv1z2p4g5vl7v2k1024f42f7526g2p2lx"; depends=[lattice MASS Matrix]; }; +rCarto = derive { name="rCarto"; version="0.8"; sha256="08813l4xfahjyn0jv48q8f6sy402n78dqsg01192pxl2dfc2i9ry"; depends=[classInt maptools RColorBrewer]; }; rChoiceDialogs = derive { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; }; -rClinicalCodes = derive { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[stringr RCurl XML rjson tm]; }; -rDEA = derive { name="rDEA"; version="1.1-1"; sha256="17j7cz08nd5sgr1z75jlrdjl9ffkdhmzmqcyrf1qcy36v9i2fqzk"; depends=[slam truncreg truncnorm maxLik]; }; +rClinicalCodes = derive { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; +rDEA = derive { name="rDEA"; version="1.1-1"; sha256="17j7cz08nd5sgr1z75jlrdjl9ffkdhmzmqcyrf1qcy36v9i2fqzk"; depends=[maxLik slam truncnorm truncreg]; }; rDNA = derive { name="rDNA"; version="1.30.1"; sha256="12h83zirv55sryc1zww97ws8kvsym1z7p7y5d4w43nam8mi3fpcd"; depends=[rJava]; }; rDVR = derive { name="rDVR"; version="0.1.1"; sha256="19a4f9k65bd49vkn3sxkjdmcpwyawk7gwmvancvqr745gfgs0wzg"; depends=[RCurl]; }; -rEMM = derive { name="rEMM"; version="1.0-8"; sha256="1d8nwranqfvr9c0g2ny7akawgqk5hjnr1mclk87gmbmwn9iwik34"; depends=[proxy MASS clusterGeneration igraph]; }; +rEMM = derive { name="rEMM"; version="1.0-9"; sha256="0b3g30s8nw107y5yg113xdw1s2h96mq0j5cldj01z3j676idjgw5"; depends=[clusterGeneration igraph MASS proxy]; }; rFDSN = derive { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; rFerns = derive { name="rFerns"; version="1.1.0"; sha256="00ddb9zwf4hqkx9qmrndz182mg69mb5fyg0v0v4b32sy4sixnps5"; depends=[]; }; rGammaGamma = derive { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; rHealthDataGov = derive { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; }; rHpcc = derive { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; }; -rJPSGCS = derive { name="rJPSGCS"; version="0.2-7"; sha256="1j8lc56q20b0qkl20r8mqa6q822rpfphj00dlmj50rgwk02pfc69"; depends=[rJava]; }; +rJPSGCS = derive { name="rJPSGCS"; version="0.2-7"; sha256="1j8lc56q20b0qkl20r8mqa6q822rpfphj00dlmj50rgwk02pfc69"; depends=[chopsticks rJava]; }; rJava = derive { name="rJava"; version="0.9-6"; sha256="008g6s6rcb5lnz5y2a2rs4iq85a4nl522g714s1w1r153qcc0jz0"; depends=[]; }; rJavax = derive { name="rJavax"; version="0.3"; sha256="0sv2fjinp4wmdfvcpgm4hv8v3fkiiv84ywqyr4hz86j50ncd79km"; depends=[rJava]; }; rJython = derive { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; }; rLTP = derive { name="rLTP"; version="0.1"; sha256="0dv8jj8rgcx4cbbs10sqdblcznxgm9ld5md922ghnka4ymar244m"; depends=[RCurl]; }; -rLakeAnalyzer = derive { name="rLakeAnalyzer"; version="1.7.3"; sha256="1w9z0m8ddslsk4d9r8dm5npm1s8sqdjv11x0gc08awa77iwak4wh"; depends=[plyr]; }; -rLiDAR = derive { name="rLiDAR"; version="0.1"; sha256="1zm3c3xpxk1ll0cq589k1kf69wgn93qmaqkvpgcjib0ay35q7c7f"; depends=[spatstat sp deldir plyr raster geometry rgl bitops]; }; +rLakeAnalyzer = derive { name="rLakeAnalyzer"; version="1.7.6"; sha256="03gdr4swy3dq6vkq4q44sdn7slgjzcqzd2pmhac4bghgzgk3zgj8"; depends=[plyr]; }; +rLiDAR = derive { name="rLiDAR"; version="0.1"; sha256="1zm3c3xpxk1ll0cq589k1kf69wgn93qmaqkvpgcjib0ay35q7c7f"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; }; rLindo = derive { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; -rNMF = derive { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[nnls knitr]; }; -rNOMADS = derive { name="rNOMADS"; version="2.1.3"; sha256="1m2qbkqaninczs4v558vpzkiqh0rngkmpp9sk7y4k5j3g4x1jrpf"; depends=[rvest scrapeR stringr fields GEOmap MBA RCurl XML]; }; -rPlant = derive { name="rPlant"; version="2.7"; sha256="0gqxb49d6qzkd533s9qp75byvz66v1csdlnmh3m2zg96aw32178r"; depends=[rjson RCurl seqinr knitcitations]; }; -rPref = derive { name="rPref"; version="0.5"; sha256="0wgyf785izfhx1jvff4as1dir1s432z9v2b2rgdxvay9y5zpc2ar"; depends=[Rcpp RcppParallel dplyr igraph Rcpp RcppParallel]; }; +rNMF = derive { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; +rNOMADS = derive { name="rNOMADS"; version="2.1.4"; sha256="0a0knxqqbn52i4ixpv16h1hnajhwx788cmdiq78ysds7yfkjrwzy"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML]; }; +rPlant = derive { name="rPlant"; version="2.7"; sha256="0gqxb49d6qzkd533s9qp75byvz66v1csdlnmh3m2zg96aw32178r"; depends=[knitcitations RCurl rjson seqinr]; }; +rPref = derive { name="rPref"; version="0.5"; sha256="0wgyf785izfhx1jvff4as1dir1s432z9v2b2rgdxvay9y5zpc2ar"; depends=[dplyr igraph Rcpp RcppParallel]; }; rPython = derive { name="rPython"; version="0.0-5"; sha256="0d608v1x8walwnx7aa3m0n7999jlbiymhl7605z4n7ps6l1140mv"; depends=[RJSONIO]; }; rSCA = derive { name="rSCA"; version="2.1"; sha256="1lpix8xsjzyhgksmigvqxpv2bvaka0b1q2kcvdyfrfcw713n19rw"; depends=[]; }; rSFA = derive { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; -rSPACE = derive { name="rSPACE"; version="1.1.1"; sha256="03ibsrhvjs5fn6syr65aw07s05apxbbm7biwlylha28yrazp2z89"; depends=[raster RMark ggplot2 tcltk2 sp plyr]; }; +rSPACE = derive { name="rSPACE"; version="1.1.1"; sha256="03ibsrhvjs5fn6syr65aw07s05apxbbm7biwlylha28yrazp2z89"; depends=[ggplot2 plyr raster RMark sp tcltk2]; }; rSymPy = derive { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; }; -rTableICC = derive { name="rTableICC"; version="1.0.2"; sha256="11mjlgvmghppy2m35w799z93b4f8wn307dl3c9dyk2sib9nxcpyv"; depends=[partitions aster]; }; +rTableICC = derive { name="rTableICC"; version="1.0.2"; sha256="11mjlgvmghppy2m35w799z93b4f8wn307dl3c9dyk2sib9nxcpyv"; depends=[aster partitions]; }; rTensor = derive { name="rTensor"; version="1.2"; sha256="1qikicdi8d5yhw43660m8v587f5xzs2k2lpmbhfw037n0liivay2"; depends=[]; }; -rUnemploymentData = derive { name="rUnemploymentData"; version="1.0.0"; sha256="1gbmr3kcv3wv4lmr7171sd76p95nhsa104955yi7y6wd5h0hk1ba"; depends=[stringr choroplethr rvest]; }; -rWBclimate = derive { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr plyr rgdal jsonlite reshape2 sp]; }; -rYoutheria = derive { name="rYoutheria"; version="1.0.0"; sha256="1yj66ars5a8mbv2axl6l5g7wflwz3j4mhwk3iz5w33rfhixixm9l"; depends=[plyr RJSONIO reshape2 RCurl]; }; +rUnemploymentData = derive { name="rUnemploymentData"; version="1.0.0"; sha256="1gbmr3kcv3wv4lmr7171sd76p95nhsa104955yi7y6wd5h0hk1ba"; depends=[choroplethr rvest stringr]; }; +rWBclimate = derive { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; }; +rYoutheria = derive { name="rYoutheria"; version="1.0.0"; sha256="1yj66ars5a8mbv2axl6l5g7wflwz3j4mhwk3iz5w33rfhixixm9l"; depends=[plyr RCurl reshape2 RJSONIO]; }; race = derive { name="race"; version="0.1.59"; sha256="13jprlnngribgvyr7fbg9d36i8qf3cax85n71dl71iv0y24al1cy"; depends=[]; }; radar = derive { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; -radiant = derive { name="radiant"; version="0.1.83"; sha256="0456iddvsnw2p0mnchig18ccbl0z53spb3nqwx43ms31b1nbfpjw"; depends=[lubridate ggplot2 dplyr magrittr car MASS gridExtra AlgDesign GPArotation psych wordcloud markdown knitr ggdendro broom tidyr pryr shiny shinyAce]; }; +radiant = derive { name="radiant"; version="0.1.83"; sha256="0456iddvsnw2p0mnchig18ccbl0z53spb3nqwx43ms31b1nbfpjw"; depends=[AlgDesign broom car dplyr ggdendro ggplot2 GPArotation gridExtra knitr lubridate magrittr markdown MASS pryr psych shiny shinyAce tidyr wordcloud]; }; radir = derive { name="radir"; version="1.0"; sha256="1aiy92r854h1l9fsa8j65w495hj7hll7k1csfnvb92h0wh0bxyzy"; depends=[hermite]; }; -rags2ridges = derive { name="rags2ridges"; version="1.4"; sha256="1vwd39vp8xdrcz1kfsjng3lzfrfb3czsxg1kvll5d275xsrhz5ix"; depends=[igraph expm reshape ggplot2 Hmisc fdrtool snowfall]; }; -rainbow = derive { name="rainbow"; version="3.3"; sha256="0xiqljshkdhhkdgcvz5n9qgbxgxskpxbq14vbpil9nqw2syj9xvj"; depends=[MASS pcaPP hdrcde cluster colorspace ks]; }; +rags2ridges = derive { name="rags2ridges"; version="1.4"; sha256="1vwd39vp8xdrcz1kfsjng3lzfrfb3czsxg1kvll5d275xsrhz5ix"; depends=[expm fdrtool ggplot2 Hmisc igraph reshape snowfall]; }; +rainbow = derive { name="rainbow"; version="3.3"; sha256="0xiqljshkdhhkdgcvz5n9qgbxgxskpxbq14vbpil9nqw2syj9xvj"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; raincpc = derive { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; }; rainfreq = derive { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; }; -ramify = derive { name="ramify"; version="0.2.0"; sha256="1fn2r6mr461yp00z8c7f1wsyhz3ag13q6ckf84sj11rgg6jivzjj"; depends=[]; }; -ramps = derive { name="ramps"; version="0.6-13"; sha256="1y7jaajzbf6d9xwr0rg0qr43l8kncgwbpfy5rpka90g3244v8nwz"; depends=[coda maps Matrix nlme fields]; }; +ramify = derive { name="ramify"; version="0.3.0"; sha256="1pysv802pyab06zl41b71x91527fw1smw4x2lcj2xc3p95yb4zb9"; depends=[]; }; +ramps = derive { name="ramps"; version="0.6-13"; sha256="1y7jaajzbf6d9xwr0rg0qr43l8kncgwbpfy5rpka90g3244v8nwz"; depends=[coda fields maps Matrix nlme]; }; randNames = derive { name="randNames"; version="0.2"; sha256="0mgfwdbadfvxg1dp8aqp2c24lkhz3bi9ssmym4ns6xjq088l3ldh"; depends=[dplyr httr jsonlite]; }; randaes = derive { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; -random = derive { name="random"; version="0.2.3"; sha256="1ljz54i73bzxh69v7xjklajcl526pdapr0jgdwd6prfilafhf618"; depends=[curl]; }; -random_polychor_pa = derive { name="random.polychor.pa"; version="1.1.4-1"; sha256="1051v7krrawdqnhz9q01rsknp2i7iv82d370q7m9i9d9i8wfnpk5"; depends=[psych nFactors boot MASS mvtnorm sfsmisc]; }; +random = derive { name="random"; version="0.2.4"; sha256="17d1gcdymgcc08hx3998vs0x70fn8gxw2a1ycm9z7xrasx03g7kn"; depends=[curl]; }; +random_polychor_pa = derive { name="random.polychor.pa"; version="1.1.4-1"; sha256="1051v7krrawdqnhz9q01rsknp2i7iv82d370q7m9i9d9i8wfnpk5"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive { name="randomForest"; version="4.6-10"; sha256="0glj08w6sbabr3n71kzd5w3jb7vhrys8rq904j27a4xk0qp4s5lv"; depends=[]; }; randomForestSRC = derive { name="randomForestSRC"; version="1.6.1"; sha256="174ky1wwdpq6wkn8hanfpfgy55jf6v1hlm6k688gjs0515y5490r"; depends=[]; }; -randomGLM = derive { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[MASS foreach doParallel]; }; -randomLCA = derive { name="randomLCA"; version="1.0-2"; sha256="14v6jmsbyzmavxjdwh9nb0lljhc7kdly4p1v2a9jypjil6kk5ibc"; depends=[lattice boot fastGHQuad]; }; +randomGLM = derive { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; }; +randomLCA = derive { name="randomLCA"; version="1.0-2"; sha256="14v6jmsbyzmavxjdwh9nb0lljhc7kdly4p1v2a9jypjil6kk5ibc"; depends=[boot fastGHQuad lattice]; }; randomNames = derive { name="randomNames"; version="0.0-8"; sha256="10fhqxnnw6gk5g8jnb83hh2nvvj65g8mwy7rfln8yzq93gjxnykm"; depends=[data_table]; }; -randomUniformForest = derive { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[Rcpp doParallel iterators foreach ggplot2 pROC gtools cluster MASS Rcpp]; }; -randomizationInference = derive { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[permute matrixStats]; }; +randomUniformForest = derive { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; +randomizationInference = derive { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[matrixStats permute]; }; randomizeBE = derive { name="randomizeBE"; version="0.3-1"; sha256="06hj614wp9lb348qwyqgw5zk2vn0m81bkwz4jprgjd72kpy8kv1h"; depends=[]; }; randomizr = derive { name="randomizr"; version="0.2.2"; sha256="0g870sr8zjfl1dh3ay14kd6v6jg2qw86w2wcdzr8f201xy5i1fgr"; depends=[]; }; randtests = derive { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; randtoolbox = derive { name="randtoolbox"; version="1.16"; sha256="03z4g2mmdywsgl95xbj80awirkgrghdk2kwhsh58p00aq4bpl5ff"; depends=[rngWELL]; }; -rangeMapper = derive { name="rangeMapper"; version="0.2-8"; sha256="0bxb37gy98smypjj27r3dbd0vfyvaqw2p25qv07j3isykcn2pxpn"; depends=[RSQLite rgdal sp rgeos raster maptools lattice RColorBrewer classInt]; }; -rankdist = derive { name="rankdist"; version="0.3.1"; sha256="0812bw2bm9837lp5l6lwbhln61qb584f0nk2k7nc60m1ppsi0dw6"; depends=[Rcpp hash optimx Rcpp]; }; +rangeMapper = derive { name="rangeMapper"; version="0.2-8"; sha256="0bxb37gy98smypjj27r3dbd0vfyvaqw2p25qv07j3isykcn2pxpn"; depends=[classInt lattice maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; +rankdist = derive { name="rankdist"; version="0.4.1"; sha256="11lc7ggi5bv836f3bwk8gb5pry4fw4qwbj95bzg34xdascaapw59"; depends=[hash optimx Rcpp]; }; rankhazard = derive { name="rankhazard"; version="1.0"; sha256="1kylg8yjrixbv86i2ffhhn8f5shsj8kvi66k202ari0li92y7dsg"; depends=[survival]; }; rappdirs = derive { name="rappdirs"; version="0.3"; sha256="1yjd91h1knagri5m4djal25p7925162zz5g6005h1fgcvwz3sszd"; depends=[]; }; -rapport = derive { name="rapport"; version="0.51"; sha256="1qn45nrcawr8d9pkdnpmm37dg31l28gfbnwjl62fs7y691187cqp"; depends=[lattice plyr pander yaml reshape]; }; -rapportools = derive { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[reshape plyr pander]; }; +rapport = derive { name="rapport"; version="0.51"; sha256="1qn45nrcawr8d9pkdnpmm37dg31l28gfbnwjl62fs7y691187cqp"; depends=[lattice pander plyr reshape yaml]; }; +rapportools = derive { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[pander plyr reshape]; }; rareGE = derive { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; -rasclass = derive { name="rasclass"; version="0.2.1"; sha256="04g2sirxrf16xjmyn4zcci757k7sgvsjbg0qjfr5phbr1rssy9qf"; depends=[car nnet RSNNS e1071 randomForest]; }; +rasclass = derive { name="rasclass"; version="0.2.1"; sha256="04g2sirxrf16xjmyn4zcci757k7sgvsjbg0qjfr5phbr1rssy9qf"; depends=[car e1071 nnet randomForest RSNNS]; }; raster = derive { name="raster"; version="2.3-40"; sha256="1swfhf6c70ybvlkw5v2wg0zbzsmzn63n9fkwj4sfp3n08flikma2"; depends=[sp]; }; -rasterVis = derive { name="rasterVis"; version="0.35"; sha256="0kdpng32b3l0hsf24zzj5m5srcka1wr26dpxfjxxsyilg6frp83r"; depends=[raster lattice latticeExtra sp zoo hexbin RColorBrewer]; }; +rasterVis = derive { name="rasterVis"; version="0.35"; sha256="0kdpng32b3l0hsf24zzj5m5srcka1wr26dpxfjxxsyilg6frp83r"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp zoo]; }; rateratio_test = derive { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; }; raters = derive { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; }; rationalfun = derive { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; }; rattle = derive { name="rattle"; version="3.4.1"; sha256="1ql7zppca6p9cph0wca5wxhhn5f8spzpxa8r65372mvigg0iw6k3"; depends=[]; }; rawFasta = derive { name="rawFasta"; version="1.0.0"; sha256="0krvs8d1r8hggjg84n7g3ncdkifa3hipbma98f49kf81fzn2npip"; depends=[]; }; rbamtools = derive { name="rbamtools"; version="2.10.0"; sha256="00y5393nac4x1vz9m5li0053cr679dj29v7ss6njgph8q27mv19c"; depends=[]; }; -rbefdata = derive { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[XML RCurl rjson wordcloud rtematres RColorBrewer]; }; +rbefdata = derive { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; -rbhl = derive { name="rbhl"; version="0.1.0"; sha256="1m2n1qczhhdlv9pkmw9dlqi2wmdw8wac8d557c4rk0vnzwzgpgpi"; depends=[httr XML RJSONIO plyr]; }; -rbison = derive { name="rbison"; version="0.4.5"; sha256="1bvirsil4674r5xb0ksmzdrg0km988rsmq93mr0q6a089zw9lhna"; depends=[plyr httr mapproj ggplot2 gridExtra maptools sp dplyr jsonlite]; }; -rbitcoinchartsapi = derive { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RJSONIO RCurl]; }; +rbhl = derive { name="rbhl"; version="0.1.0"; sha256="1m2n1qczhhdlv9pkmw9dlqi2wmdw8wac8d557c4rk0vnzwzgpgpi"; depends=[httr plyr RJSONIO XML]; }; +rbison = derive { name="rbison"; version="0.4.5"; sha256="1bvirsil4674r5xb0ksmzdrg0km988rsmq93mr0q6a089zw9lhna"; depends=[dplyr ggplot2 gridExtra httr jsonlite mapproj maptools plyr sp]; }; +rbitcoinchartsapi = derive { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; rbmn = derive { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; }; rbounds = derive { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbugs = derive { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; -rcbalance = derive { name="rcbalance"; version="1.5"; sha256="1lqxx9ghxnskl8sy26x03d8baw8kn78mlxbh1gjjkszx4y5bm4vl"; depends=[MASS plyr]; }; +rcbalance = derive { name="rcbalance"; version="1.6"; sha256="0nbwsisx4ajdccywwvpg2xcaf8b4b25zij2qcb39yzmlz0yk6jjz"; depends=[MASS plyr]; }; rcdd = derive { name="rcdd"; version="1.1-8"; sha256="09bb92rp44palx9dvc9pb0gdmb1g22289xjk8p9s918lalc6i9aw"; depends=[]; }; -rcdk = derive { name="rcdk"; version="3.3.2"; sha256="02rlg3w8dbmag8b4z4wayh7xn61xc9g3647kxg91r0mvfhmrxl2h"; depends=[fingerprint rJava rcdklibs png iterators]; }; +rcdk = derive { name="rcdk"; version="3.3.2"; sha256="02rlg3w8dbmag8b4z4wayh7xn61xc9g3647kxg91r0mvfhmrxl2h"; depends=[fingerprint iterators png rcdklibs rJava]; }; rcdklibs = derive { name="rcdklibs"; version="1.5.8.4"; sha256="0mzkr23f4d639vhxfdbg44hzxapmpqkhc084ikcj93gjwvdz903k"; depends=[rJava]; }; -rcicr = derive { name="rcicr"; version="0.3.0"; sha256="0fvv6diqg6sw3ar3gzvhl3mbm6zvx0k12lzsa92mccg0giqa9n0w"; depends=[matlab aspace jpeg]; }; -rclinicaltrials = derive { name="rclinicaltrials"; version="1.4.1"; sha256="1x8mj4gzfpgvdj3glwanr76g5x8pks8fm806bvnfls35g967z4p4"; depends=[httr XML plyr]; }; -rcorpora = derive { name="rcorpora"; version="1.0.1"; sha256="10bmsmx9pznfpddddvk7khm7klxg1c82bf85613bnpcwjyb7xcid"; depends=[jsonlite]; }; -rcppbugs = derive { name="rcppbugs"; version="0.1.4.1"; sha256="0wb5mzw1sdrr7lc6izilv60k5v0wcvy8q31a863b63a9jvh16g8d"; depends=[Rcpp Rcpp RcppArmadillo BH]; }; -rcrossref = derive { name="rcrossref"; version="0.3.0"; sha256="1w822n6mlld7fa92iy38xjvgnkhyns3mvy7vaqabgr2bikcz6545"; depends=[jsonlite XML httr plyr bibtex dplyr]; }; +rchallenge = derive { name="rchallenge"; version="1.1"; sha256="1qad0mcadr3zw5r37rgwnqf4ic9brlw3zl5n4jcxyaj324fj4pa3"; depends=[knitr rmarkdown]; }; +rcicr = derive { name="rcicr"; version="0.3.0"; sha256="0fvv6diqg6sw3ar3gzvhl3mbm6zvx0k12lzsa92mccg0giqa9n0w"; depends=[aspace jpeg matlab]; }; +rclinicaltrials = derive { name="rclinicaltrials"; version="1.4.1"; sha256="1x8mj4gzfpgvdj3glwanr76g5x8pks8fm806bvnfls35g967z4p4"; depends=[httr plyr XML]; }; +rcorpora = derive { name="rcorpora"; version="1.1.0"; sha256="05i9zqvgg5fxgscqzmbsi84baq9cxs14k70agjy95h61fndaaarf"; depends=[jsonlite]; }; +rcppbugs = derive { name="rcppbugs"; version="0.1.4.1"; sha256="0wb5mzw1sdrr7lc6izilv60k5v0wcvy8q31a863b63a9jvh16g8d"; depends=[BH Rcpp RcppArmadillo]; }; +rcrossref = derive { name="rcrossref"; version="0.3.0"; sha256="1w822n6mlld7fa92iy38xjvgnkhyns3mvy7vaqabgr2bikcz6545"; depends=[bibtex dplyr httr jsonlite plyr XML]; }; rda = derive { name="rda"; version="1.0.2-2"; sha256="1g2q7c0y138i9r7jgjrlpqznvwpqsj6f7vljqqfzh2l6kcj43vjj"; depends=[]; }; -rdatamarket = derive { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[zoo RCurl RJSONIO]; }; -rdd = derive { name="rdd"; version="0.56"; sha256="1x61ik606mwn46x3qzgq8wk2f6d5qqr95h30bz6hfbjlpcxw3700"; depends=[sandwich lmtest AER Formula]; }; +rdatamarket = derive { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[RCurl RJSONIO zoo]; }; +rdd = derive { name="rdd"; version="0.56"; sha256="1x61ik606mwn46x3qzgq8wk2f6d5qqr95h30bz6hfbjlpcxw3700"; depends=[AER Formula lmtest sandwich]; }; rdetools = derive { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; rdrobust = derive { name="rdrobust"; version="0.80"; sha256="02adafhbjp259hbbbk32yllgn35xxim2mwn6yixv4wh5dgr974v6"; depends=[]; }; rdrop2 = derive { name="rdrop2"; version="0.6"; sha256="1yxg38v7r34f9rid5q6q1g9f30q3zc4dnkziyps3514l5dnbvk3j"; depends=[assertthat data_table dplyr httr jsonlite magrittr]; }; -rdryad = derive { name="rdryad"; version="0.1.1"; sha256="0mqpkmwkznyxj0nn1v389p741dlc66dixcvljsn2rvg0q6p75fkj"; depends=[XML RCurl OAIHarvester ape gdata plyr stringr RJSONIO]; }; -reGenotyper = derive { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots zoo MatrixEQTL]; }; +rdryad = derive { name="rdryad"; version="0.1.1"; sha256="0mqpkmwkznyxj0nn1v389p741dlc66dixcvljsn2rvg0q6p75fkj"; depends=[ape gdata OAIHarvester plyr RCurl RJSONIO stringr XML]; }; +reGenotyper = derive { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; readBrukerFlexData = derive { name="readBrukerFlexData"; version="1.8.2"; sha256="1cagv6l29h3p87h7c2bgba23v2wxrs2kg4zg1dk046m2x11mwx3c"; depends=[]; }; readGenalex = derive { name="readGenalex"; version="1.0"; sha256="1lhfw8xbwnjhslriaxziw4dskmjfawz5g31h2yl9ds2nwvwhmdwi"; depends=[pegas]; }; readMLData = derive { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; @@ -5470,294 +5593,302 @@ readMzXmlData = derive { name="readMzXmlData"; version="2.8"; sha256="0x5h3dh6fk readODS = derive { name="readODS"; version="1.4"; sha256="00xcas8y0cq3scgi9vlfkrjalphmd7bsynlzpy7izxa5w9b7x79f"; depends=[XML]; }; readbitmap = derive { name="readbitmap"; version="0.1-4"; sha256="08fqqsdb2wsx415mnac9mzl5sr5and0zx72ablnlidqfxv8xsi9d"; depends=[bmp jpeg png]; }; reader = derive { name="reader"; version="1.0.5"; sha256="1g22pnlfr2c974s6rqnyixknhgy2crqbxg2cg2s3ja1sk29v4gr0"; depends=[NCmisc]; }; -readr = derive { name="readr"; version="0.1.0"; sha256="0w6576lrnwk1p90mjwsgy7hi3rk5dqmksnwnmn1gw46lh2888bc8"; depends=[Rcpp curl Rcpp BH]; }; -readstata13 = derive { name="readstata13"; version="0.6.1"; sha256="0h5x6j74m7z715nknh4s62ffs7j3ccpcvy0ws8wf3bdzfa27jvq5"; depends=[Rcpp Rcpp]; }; -readxl = derive { name="readxl"; version="0.1.0"; sha256="0a0mjcn70a0nz1bkrdjwq495000kswxvyq1nlad9k3ayni2ixjkd"; depends=[Rcpp Rcpp]; }; +readr = derive { name="readr"; version="0.1.1"; sha256="1raw3kihksqr274p0mdigfxpg8yrhx0phwiab22sdi1vp62c8ja6"; depends=[BH curl Rcpp]; }; +readstata13 = derive { name="readstata13"; version="0.7"; sha256="14il790jgn8l9c8gxgl2s11vzff5xz77jsgdgjs044r407a72wkb"; depends=[Rcpp]; }; +readxl = derive { name="readxl"; version="0.1.0"; sha256="0a0mjcn70a0nz1bkrdjwq495000kswxvyq1nlad9k3ayni2ixjkd"; depends=[Rcpp]; }; reams = derive { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; -rebird = derive { name="rebird"; version="0.1.1"; sha256="0s8wmp2sghs56ppca57fjfab7wngszmy1g8rd3hiwx6br0sjidcg"; depends=[RJSONIO httr RCurl plyr]; }; +rebird = derive { name="rebird"; version="0.1.1"; sha256="0s8wmp2sghs56ppca57fjfab7wngszmy1g8rd3hiwx6br0sjidcg"; depends=[httr plyr RCurl RJSONIO]; }; rebmix = derive { name="rebmix"; version="2.7.1"; sha256="1m3mmqi4kfai0hx2khkblqairp59fgh0japg23rgib1djmdcqb4n"; depends=[]; }; rebus = derive { name="rebus"; version="0.0-5"; sha256="06rl6knnk93k537hhjx4r55hq6hssij7xc426ilki329vwfi5kyf"; depends=[]; }; recalls = derive { name="recalls"; version="0.1.0"; sha256="121r2lf32x4yq8zxx6pbnphs7ygn382ns85qxws6jnqzy52q41vh"; depends=[RCurl RJSONIO]; }; reccsim = derive { name="reccsim"; version="0.9-1"; sha256="17nsp91xq20vfwjfwav80qjs2wc7gwpmrdnwv7lc61baq0kkcs7k"; depends=[]; }; -recluster = derive { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[vegan ape picante phangorn phytools cluster]; }; -recommenderlab = derive { name="recommenderlab"; version="0.1-5"; sha256="1hpgd2la4wnlxx5h8cjni4i978hdssr041zrg851lpjrkbxmxfsi"; depends=[Matrix registry arules proxy]; }; +recluster = derive { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; +recommenderlab = derive { name="recommenderlab"; version="0.1-5"; sha256="1hpgd2la4wnlxx5h8cjni4i978hdssr041zrg851lpjrkbxmxfsi"; depends=[arules Matrix proxy registry]; }; recommenderlabBX = derive { name="recommenderlabBX"; version="0.1-0"; sha256="0dl79cxarsfp8l4nxnns05jwnjygigjhwpjrr4lzx4nvsfxmgsr2"; depends=[recommenderlab]; }; recommenderlabJester = derive { name="recommenderlabJester"; version="0.1-0"; sha256="1m5jg8gs16cwwwcnjzqkyzwyip8fshrwhmqz8g7nlf6g3p9347rl"; depends=[recommenderlab]; }; -reconstructr = derive { name="reconstructr"; version="0.5"; sha256="0lffi30grk88na2jmkbhs62xf3d8mzrmjsiajrpp7dsaxa650bf0"; depends=[Rcpp Rcpp]; }; -recosystem = derive { name="recosystem"; version="0.2.5"; sha256="0i5rgkmjaz50qlyi85hmr61r0iir53prrphzvnjq5bjchb1k3m09"; depends=[Rcpp Rcpp]; }; +reconstructr = derive { name="reconstructr"; version="1.1.0"; sha256="1kswvpmhk3zzwm4nv6pjb80ww95n9bd4q9j7bhk9kql8v5mnfg5m"; depends=[Rcpp]; }; +recosystem = derive { name="recosystem"; version="0.3"; sha256="064rnnz4m85mwq3084m0ldj8sb5z6jwzqzkh22fagsq2xyqri15l"; depends=[Rcpp]; }; redcapAPI = derive { name="redcapAPI"; version="1.3"; sha256="08js2lvrdl9ig0pq1wf7cwkmvaah6xs65bgfysdhsyayx0lz5rii"; depends=[chron DBI Hmisc httr stringr]; }; +redist = derive { name="redist"; version="1.1"; sha256="0ddwvmzmqv5nm3azia1g0x0icj1jcd7s34f1kv01phky2pmz5wy4"; depends=[coda Rcpp RcppArmadillo sp spdep]; }; ref = derive { name="ref"; version="0.99"; sha256="0f0yz08pqpg57mcm7rh4g0rbvlcvs5fbpjkfrq7fmj850z1ixvw0"; depends=[]; }; -refGenome = derive { name="refGenome"; version="1.3.0"; sha256="121aw4w84hlhxgwlf1gh0w3ydvd8zsijrh0q7fzcwi1vdgnjb7lv"; depends=[doBy RSQLite DBI]; }; -referenceIntervals = derive { name="referenceIntervals"; version="1.1.1"; sha256="04199nxh216msaghkp66zsi96h76a7c42ldml0fm66v2vamcslg8"; depends=[boot extremevalues car outliers]; }; +refGenome = derive { name="refGenome"; version="1.3.0"; sha256="121aw4w84hlhxgwlf1gh0w3ydvd8zsijrh0q7fzcwi1vdgnjb7lv"; depends=[DBI doBy RSQLite]; }; +referenceIntervals = derive { name="referenceIntervals"; version="1.1.1"; sha256="04199nxh216msaghkp66zsi96h76a7c42ldml0fm66v2vamcslg8"; depends=[boot car extremevalues outliers]; }; refset = derive { name="refset"; version="0.1.0"; sha256="0yj87sp6ghxv20hz5knmw3d7way1hsggk759wqxsbfprd38y6khd"; depends=[]; }; -refund = derive { name="refund"; version="0.1-11"; sha256="1afsxab1jivs4vj6diqh7352v98divna6az1dxsdn7lvw6cmph6y"; depends=[fda lattice boot mgcv MASS glmnet magic nlme wavethresh Matrix gamm4 matrixStats lme4 RLRsim]; }; +refund = derive { name="refund"; version="0.1-11"; sha256="1afsxab1jivs4vj6diqh7352v98divna6az1dxsdn7lvw6cmph6y"; depends=[boot fda gamm4 glmnet lattice lme4 magic MASS Matrix matrixStats mgcv nlme RLRsim wavethresh]; }; refund_wave = derive { name="refund.wave"; version="0.1"; sha256="1vnhg7gi5r8scwivqjwhrv72sq8asnm4whx3jk39saphdxpk5hxv"; depends=[glmnet wavethresh]; }; regRSM = derive { name="regRSM"; version="0.4"; sha256="1rg74jqj8rw69q6my0n4alflx7mgfwng35ff72bxwjhn9ghhj347"; depends=[]; }; regexr = derive { name="regexr"; version="1.0.2"; sha256="1mr8qmiz9bgq5v6f065z40aj9zllidsv6gg8mjc28zxmkz5zn6gp"; depends=[]; }; registry = derive { name="registry"; version="0.2"; sha256="1ifv9sql70kylfj12cdb1j1zpk3ix728m8qj46sf1zyc5mhll01s"; depends=[]; }; -reglogit = derive { name="reglogit"; version="1.2-2"; sha256="0nq60s8l860z6nd52l6c77vamis7hl2j667gkxry0jir2pxsk4jp"; depends=[mvtnorm boot Matrix]; }; +reglogit = derive { name="reglogit"; version="1.2-2"; sha256="0nq60s8l860z6nd52l6c77vamis7hl2j667gkxry0jir2pxsk4jp"; depends=[boot Matrix mvtnorm]; }; regpro = derive { name="regpro"; version="0.1.0"; sha256="0d47ffsqx1633pmf3abi7wksyng2g71mz2z9nb2zqdak794l1n44"; depends=[denpro]; }; regress = derive { name="regress"; version="1.3-14"; sha256="0qnks28fr8siq95iiiqyvz82cbdg14i18rj7g9rqyjhiam12fshl"; depends=[]; }; regsubseq = derive { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; -rehh = derive { name="rehh"; version="1.12"; sha256="0qqmh48vxi1yqf6ykfsi6wighly5msf4lqx058lbn555g3vg17jp"; depends=[gplots]; }; -relSim = derive { name="relSim"; version="0.2-0"; sha256="0cqcp7r263sk874l17wz84mzm4b1dxbfbsk74937rcz1wfc623k5"; depends=[Rcpp Rcpp]; }; +rehh = derive { name="rehh"; version="1.13"; sha256="0hi9bfclai1b948yq9fp1q7rxb8nwvdm368l09la8ghlgxi5lnm8"; depends=[gplots]; }; +relSim = derive { name="relSim"; version="0.2-0"; sha256="0cqcp7r263sk874l17wz84mzm4b1dxbfbsk74937rcz1wfc623k5"; depends=[Rcpp]; }; rela = derive { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; -relaimpo = derive { name="relaimpo"; version="2.2-2"; sha256="1rxjg2yw2gyshaij98w83cshxwscnq3ql7bg13n7v4nbjsi1l6zh"; depends=[MASS boot survey mitools corpcor]; }; -relations = derive { name="relations"; version="0.6-5"; sha256="00apza97y3v9q95if4fm5w5f7fw1i091pz4avqs1v59kysahdj9h"; depends=[cluster slam sets]; }; +relaimpo = derive { name="relaimpo"; version="2.2-2"; sha256="1rxjg2yw2gyshaij98w83cshxwscnq3ql7bg13n7v4nbjsi1l6zh"; depends=[boot corpcor MASS mitools survey]; }; +relations = derive { name="relations"; version="0.6-5"; sha256="00apza97y3v9q95if4fm5w5f7fw1i091pz4avqs1v59kysahdj9h"; depends=[cluster sets slam]; }; relax = derive { name="relax"; version="1.3.15"; sha256="0cgvxw3pmy9kx8p81bb5n5nnbn6l9hm07k6hdy7p2j2gl15xxnpq"; depends=[]; }; relaxnet = derive { name="relaxnet"; version="0.3-2"; sha256="1l83rk7r4vkcxbfljmibzm8lzpx0vf406hv4h5cy9x0k3rz2bfh0"; depends=[glmnet]; }; relaxo = derive { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; reldist = derive { name="reldist"; version="1.6-4"; sha256="0v86wws29zy67jidrvfxkfwhpxppqrpq5h3b22cjif5qjqz3kk8f"; depends=[mgcv]; }; -relevent = derive { name="relevent"; version="1.0-4"; sha256="10bf1s7jmas8ck1izqibqcaqg4z55ciwdpd9pm2697y8z0jhr2rj"; depends=[trust sna coda]; }; +relevent = derive { name="relevent"; version="1.0-4"; sha256="10bf1s7jmas8ck1izqibqcaqg4z55ciwdpd9pm2697y8z0jhr2rj"; depends=[coda sna trust]; }; reliaR = derive { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; }; relimp = derive { name="relimp"; version="1.0-4"; sha256="1i9j218b6lh6ag4a8x4vwhmqqclbzx46mpwd36s8hdqayzs6lmad"; depends=[]; }; -relsurv = derive { name="relsurv"; version="2.0-4"; sha256="1da3sj7hks5azm18m23fh8r2g02p0nivgilayndxwwvd1i70ycrx"; depends=[survival date MASS]; }; +relsurv = derive { name="relsurv"; version="2.0-5"; sha256="0lwmdz1hm46qlkvfvvyc2v592lx2crs3cxjpkph0vg5w6a0k10i4"; depends=[date survival]; }; remMap = derive { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; }; -remix = derive { name="remix"; version="2.1"; sha256="0s1gaf7vj08xd4m7lc9qpwvk0mpamabbxk71970mfazx6hk24dr0"; depends=[plyr survival Hmisc ascii]; }; -remote = derive { name="remote"; version="0.3.0"; sha256="1f41j26grkv4830bvi6z16b63yksplrq3yg1amd4l634lwhp6x55"; depends=[Rcpp raster foreach Rcpp]; }; -rentrez = derive { name="rentrez"; version="0.4.1"; sha256="1prpzfq5106f0r5z4ffjvs9qkmfaf67icj8k1wngqwmvl2wg88gq"; depends=[XML httr jsonlite]; }; +remix = derive { name="remix"; version="2.1"; sha256="0s1gaf7vj08xd4m7lc9qpwvk0mpamabbxk71970mfazx6hk24dr0"; depends=[ascii Hmisc plyr survival]; }; +remote = derive { name="remote"; version="1.0.0"; sha256="09840z50x5i8bsi49s3asqhcz84z16pyq9w50yay4h8x82w3hfh3"; depends=[foreach raster Rcpp]; }; +rentrez = derive { name="rentrez"; version="0.4.1"; sha256="1prpzfq5106f0r5z4ffjvs9qkmfaf67icj8k1wngqwmvl2wg88gq"; depends=[httr jsonlite XML]; }; repfdr = derive { name="repfdr"; version="1.1-3"; sha256="15f7x7vqwlpyzvzsybyz825a9dmglbrngjmajrsqlwffypgxjvi8"; depends=[]; }; +repijson = derive { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; }; replicatedpp2w = derive { name="replicatedpp2w"; version="0.1-1"; sha256="0q6mfrdjpx6nh4xgr5i7ka3xvnx9585xdhni020q4pm05rhimid2"; depends=[spatstat]; }; replicationInterval = derive { name="replicationInterval"; version="0.3"; sha256="1zqs114514xj59dlkhw5kmq73grghmb3i5rnnq05qzgf5wjn581i"; depends=[MBESS]; }; -repmis = derive { name="repmis"; version="0.4.2"; sha256="1pjf010h4rkrwarq541wh8x1267894fsdg8na41z8cp3hr5aql21"; depends=[data_table digest httr plyr R_cache]; }; +repmis = derive { name="repmis"; version="0.4.4"; sha256="12sw9l2nifkvri5kvgf0br7yqqmjlq5rj58g6yik8gh7wwy5157z"; depends=[data_table digest httr plyr R_cache]; }; repolr = derive { name="repolr"; version="2.0"; sha256="10wg07sfxcxzswf3zh5sx2cm9dxjx11zymy82a4q9awnacb5gp9b"; depends=[gee]; }; -reportRx = derive { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[reshape survival xtable aod cmprsk geoR stringr]; }; +reportRx = derive { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; }; reportr = derive { name="reportr"; version="1.1.2"; sha256="0lxnmay9vgg7dsa3scszx3v4lb6m3bv6kjl0dk7hrl7bd67azdrk"; depends=[]; }; reports = derive { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; }; reporttools = derive { name="reporttools"; version="1.1.1"; sha256="0cnxzq679f860z063j3pbm2c5qcaz45g73khj9rdp3if0cci8ikj"; depends=[xtable]; }; -repra = derive { name="repra"; version="0.4.2"; sha256="1djcs83z8ckpmsbyzscnysmy45z28kswzm852176b9pip21mb1w8"; depends=[data_table dplyr Rcpp reshape2 ggplot2 assertthat Rcpp]; }; +repra = derive { name="repra"; version="0.4.2"; sha256="1djcs83z8ckpmsbyzscnysmy45z28kswzm852176b9pip21mb1w8"; depends=[assertthat data_table dplyr ggplot2 Rcpp reshape2]; }; represent = derive { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; -reproducer = derive { name="reproducer"; version="0.1.2"; sha256="067yj1dhhikjrnkklsfp6p03gp4lqxwfdwhl6z8djj4rkzi48xm5"; depends=[openxlsx ggplot2 gridExtra]; }; -rerddap = derive { name="rerddap"; version="0.1.0"; sha256="1a58vsm1m9ybafda6pak0fa7kdfscslq9855a5r2x12bzqy98k4f"; depends=[httr dplyr data_table jsonlite xml2 digest ncdf]; }; +reproducer = derive { name="reproducer"; version="0.1.3"; sha256="1pz2l123xc16m1pqi95khg9r267s25igcyjgr7hn9gy623cqgzah"; depends=[ggplot2 gridExtra metafor openxlsx RColorBrewer tm wordcloud xtable]; }; +rerddap = derive { name="rerddap"; version="0.1.0"; sha256="1a58vsm1m9ybafda6pak0fa7kdfscslq9855a5r2x12bzqy98k4f"; depends=[data_table digest dplyr httr jsonlite ncdf xml2]; }; resample = derive { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; }; -resemble = derive { name="resemble"; version="1.1.1"; sha256="0mz5mxm6p1drfx2s9dx35m2bnvirr8lkjjh5b4vdk9p2cdv1qkkv"; depends=[RcppArmadillo foreach iterators pls Rcpp Rcpp RcppArmadillo]; }; +resemble = derive { name="resemble"; version="1.1.1"; sha256="0mz5mxm6p1drfx2s9dx35m2bnvirr8lkjjh5b4vdk9p2cdv1qkkv"; depends=[foreach iterators pls Rcpp RcppArmadillo]; }; reshape = derive { name="reshape"; version="0.8.5"; sha256="08jm9fb02g1fp9vmiqmc0yki6n3rnnp2ph1rk8n9lb5c1s390f4k"; depends=[plyr]; }; -reshape2 = derive { name="reshape2"; version="1.4.1"; sha256="0hl082dyk3pk07nqprpn5dvnrkqhnf6zjnjig1ijddxhlmsrzm7v"; depends=[plyr stringr Rcpp Rcpp]; }; -reshapeGUI = derive { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[reshape2 plyr gWidgets gWidgetsRGtk2]; }; -restlos = derive { name="restlos"; version="0.1-3"; sha256="03bsakp9kd8i468wz7xhdjqb6ck6p9wci3gk2b2bykv73c0g6n95"; depends=[som rgl geometry igraph]; }; +reshape2 = derive { name="reshape2"; version="1.4.1"; sha256="0hl082dyk3pk07nqprpn5dvnrkqhnf6zjnjig1ijddxhlmsrzm7v"; depends=[plyr Rcpp stringr]; }; +reshapeGUI = derive { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[gWidgets gWidgetsRGtk2 plyr reshape2]; }; +restimizeapi = derive { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; +restlos = derive { name="restlos"; version="0.1-3"; sha256="03bsakp9kd8i468wz7xhdjqb6ck6p9wci3gk2b2bykv73c0g6n95"; depends=[geometry igraph rgl som]; }; restorepoint = derive { name="restorepoint"; version="0.1.5"; sha256="0xmpxprirnd1yavwk3vkc0cp715d187mn0amppya7kd47iw10wsy"; depends=[]; }; retimes = derive { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; -retistruct = derive { name="retistruct"; version="0.5.10"; sha256="1wg2a906y09hcqba42hh9r2x59w35dms2aa5mw44avigc1nwm0s2"; depends=[foreign RImageJROI png ttutils sp geometry RTriangle rgl R_matlab]; }; -retrosheet = derive { name="retrosheet"; version="1.0.2"; sha256="079rfc55sy315i7zhv1a8r6drgpiglbf3b4gwyria2mfbn94a5qb"; depends=[RCurl XML data_table stringi]; }; +retistruct = derive { name="retistruct"; version="0.5.10"; sha256="1wg2a906y09hcqba42hh9r2x59w35dms2aa5mw44avigc1nwm0s2"; depends=[foreign geometry png R_matlab rgl RImageJROI RTriangle sp ttutils]; }; +retrosheet = derive { name="retrosheet"; version="1.0.2"; sha256="079rfc55sy315i7zhv1a8r6drgpiglbf3b4gwyria2mfbn94a5qb"; depends=[data_table RCurl stringi XML]; }; reutils = derive { name="reutils"; version="0.1.2"; sha256="0f2c6zxk6x2plq649b1ml6b112j6y8ys074pn30yw35ncg3h86fa"; depends=[assertthat RCurl XML]; }; -reval = derive { name="reval"; version="1.0"; sha256="14vzsg3azggfrm1cnrxigbhnpxpjifjf61r71hf73ggpspx2gj5r"; depends=[doParallel foreach]; }; -revealedPrefs = derive { name="revealedPrefs"; version="0.2"; sha256="1f871y4wkjznzgwxfbnmrfiafq43cyf0i5hjy68ybxc7bbvfryxc"; depends=[Rcpp Rcpp RcppArmadillo]; }; +reval = derive { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; }; +revealedPrefs = derive { name="revealedPrefs"; version="0.2"; sha256="1f871y4wkjznzgwxfbnmrfiafq43cyf0i5hjy68ybxc7bbvfryxc"; depends=[Rcpp RcppArmadillo]; }; reweight = derive { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; -rex = derive { name="rex"; version="1.0.1"; sha256="1k1s5rx3lpyh6apakaf4mw94y72zkxf14c2kj0d9njhf5j6g1sdj"; depends=[magrittr lazyeval]; }; -rexpokit = derive { name="rexpokit"; version="0.24.1"; sha256="143zi6qb0l8vbx87jf58v1zfxqmvv6x4im1knd6q4dpp9gffqs22"; depends=[SparseM Rcpp Rcpp]; }; -rfPermute = derive { name="rfPermute"; version="1.6.2"; sha256="069dhv41bwyp2nywkrr2hihyz8zialhxlyzpfpq4r9lyjnamg2k9"; depends=[ggplot2 randomForest gridExtra]; }; +rex = derive { name="rex"; version="1.0.1"; sha256="1k1s5rx3lpyh6apakaf4mw94y72zkxf14c2kj0d9njhf5j6g1sdj"; depends=[lazyeval magrittr]; }; +rexpokit = derive { name="rexpokit"; version="0.24.1"; sha256="143zi6qb0l8vbx87jf58v1zfxqmvv6x4im1knd6q4dpp9gffqs22"; depends=[Rcpp SparseM]; }; +rfPermute = derive { name="rfPermute"; version="1.7"; sha256="1nnnrbznig7hkdg9hkpw1yfvn2rbgbshjmssz1afk8c1w3q9knsi"; depends=[ggplot2 gridExtra randomForest]; }; rfUtilities = derive { name="rfUtilities"; version="1.0-1"; sha256="0y0jn4c5dpr9drjyjg2vsgsb37s0l284hvh35zm53hs8f881ycx3"; depends=[randomForest]; }; -rfigshare = derive { name="rfigshare"; version="0.3.6"; sha256="1n6i5ppn3v93126gvva8sn85v1h4f7hgc43pxja9bwr1ypmzgr45"; depends=[RJSONIO httr httpuv plyr yaml ggplot2 XML]; }; -rfishbase = derive { name="rfishbase"; version="0.2-2"; sha256="09pa5zpw9rclf5pqj1wjjhdcblca9sm9xcs9ka3xfa7azj7n9ljd"; depends=[XML RCurl]; }; -rfisheries = derive { name="rfisheries"; version="0.1"; sha256="1g0h3icj7cikfkh76yff84hil23rfshlnnqmgvnfbhykyr2zmk61"; depends=[httr data_table assertthat ggplot2 rjson]; }; -rfoaas = derive { name="rfoaas"; version="0.1.3"; sha256="0wdb645fx2wsy4vwz43d8ynwx3divpjwbkql52zkikyr8zv21gz5"; depends=[httr]; }; +rfigshare = derive { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; +rfishbase = derive { name="rfishbase"; version="0.2-2"; sha256="09pa5zpw9rclf5pqj1wjjhdcblca9sm9xcs9ka3xfa7azj7n9ljd"; depends=[RCurl XML]; }; +rfisheries = derive { name="rfisheries"; version="0.1"; sha256="1g0h3icj7cikfkh76yff84hil23rfshlnnqmgvnfbhykyr2zmk61"; depends=[assertthat data_table ggplot2 httr rjson]; }; +rfoaas = derive { name="rfoaas"; version="0.1.6"; sha256="0wfpf6k0xsjzpabyziqyllksj1p9n6ix1lnk02mkz0bzl97hnilq"; depends=[httr]; }; rfordummies = derive { name="rfordummies"; version="0.1.1"; sha256="0k725wgba9132cfbm0ppgy476iyh9gcn6bdh9gjqab5sj3jb0iva"; depends=[]; }; -rforensicbatwing = derive { name="rforensicbatwing"; version="1.3"; sha256="0ff4v7px4wm5rd4f4z8s4arh48hgayqjfpnni2997c92wlsq3d12"; depends=[Rcpp Rcpp]; }; +rforensicbatwing = derive { name="rforensicbatwing"; version="1.3"; sha256="0ff4v7px4wm5rd4f4z8s4arh48hgayqjfpnni2997c92wlsq3d12"; depends=[Rcpp]; }; rgabriel = derive { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; -rgam = derive { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp Rcpp RcppArmadillo]; }; -rgauges = derive { name="rgauges"; version="0.2.0"; sha256="0p42hh32wcjcchsalpsan52kvz6nd1gw28xnydqgfzkzcqkl22dd"; depends=[ggplot2 lubridate plyr httr reshape2 gridExtra scales data_table]; }; -rgbif = derive { name="rgbif"; version="0.8.0"; sha256="1sdjlymymfc5chnrc5if0fvf64mjz6sc4071xsw2ja7zcdasxb40"; depends=[XML plyr ggplot2 maps httr rgeos sp data_table stringr whisker magrittr jsonlite]; }; +rgam = derive { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp RcppArmadillo]; }; +rgauges = derive { name="rgauges"; version="0.2.0"; sha256="0p42hh32wcjcchsalpsan52kvz6nd1gw28xnydqgfzkzcqkl22dd"; depends=[data_table ggplot2 gridExtra httr lubridate plyr reshape2 scales]; }; +rgbif = derive { name="rgbif"; version="0.8.4"; sha256="13rcqqa19w3gzab4xg006kj7m5zj4x1hbxpam8yg1r3n9dad1bjz"; depends=[data_table ggplot2 httr jsonlite magrittr V8 whisker XML]; }; rgcvpack = derive { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; -rgdal = derive { name="rgdal"; version="0.9-2"; sha256="0jzhjy3qnb9aimmwyssinbyxz49hzcfksmxhsqyz3g8868k946g5"; depends=[sp sp]; }; +rgdal = derive { name="rgdal"; version="0.9-3"; sha256="011vw2pgaxgbba0a0c5ha2n0haljbn00z5km13fhgqlvhhdhzd6n"; depends=[sp]; }; rgenoud = derive { name="rgenoud"; version="5.7-12"; sha256="17gzkn4laylnksy8h2w8c0whcxpchsx7bwjzk1q5sfqxswclqq0g"; depends=[]; }; -rgeos = derive { name="rgeos"; version="0.3-8"; sha256="0snbfxzh700fn415li0wia94zgb0x73vwdrbrpimvz9k3y43yvp8"; depends=[sp sp]; }; -rgexf = derive { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[XML Rook igraph]; }; +rgeos = derive { name="rgeos"; version="0.3-11"; sha256="1x5fna4n5ck0wfdrplj5q5cvv289fzsmlr95q86na78lvwn14fzl"; depends=[sp]; }; +rgexf = derive { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; }; rggobi = derive { name="rggobi"; version="2.1.20"; sha256="1a7l68h3m9cq14k7y96ijgh0iz3d6j4j2anxg50pykz20lnykr9g"; depends=[RGtk2]; }; rgl = derive { name="rgl"; version="0.95.1247"; sha256="1zmb09lljng1dmwd23w5ld8z9wr0xd0s365vz54il0ndwrqfhsi1"; depends=[]; }; -rglobi = derive { name="rglobi"; version="0.2.6"; sha256="042lc71j49bndlmcxmqdjly48qvqjpif7dgzk4cxsmbil5jmyzks"; depends=[rjson RCurl]; }; +rglobi = derive { name="rglobi"; version="0.2.8"; sha256="1033cmwairf4nm9r6nvi1ddgq0j9mzchlzvj1hph0vlcbb53ybqh"; depends=[RCurl rjson]; }; rgp = derive { name="rgp"; version="0.4-1"; sha256="1p5qa46v0sli7ccyp39iysn04yvq80dy2w1hk4c80pfwrxc6n03g"; depends=[emoa]; }; -rgpui = derive { name="rgpui"; version="0.1-2"; sha256="0sh5wj4f2wj6g3r7xaq95q89n0qjavchi5kfi6sj1j34ykybbs3g"; depends=[rgp shiny emoa]; }; -rgr = derive { name="rgr"; version="1.1.11"; sha256="01hlj3nqzfsffr4k7d3iyp4mfqs1sy94d0scy64wh9kkplrzkh4i"; depends=[MASS fastICA]; }; +rgpui = derive { name="rgpui"; version="0.1-2"; sha256="0sh5wj4f2wj6g3r7xaq95q89n0qjavchi5kfi6sj1j34ykybbs3g"; depends=[emoa rgp shiny]; }; +rgr = derive { name="rgr"; version="1.1.11"; sha256="01hlj3nqzfsffr4k7d3iyp4mfqs1sy94d0scy64wh9kkplrzkh4i"; depends=[fastICA MASS]; }; rgrass7 = derive { name="rgrass7"; version="0.1-0"; sha256="19fwf3gaq25x3imj9kc1112cf9dhafp0d1gjly2xh2gz1kam5wl6"; depends=[sp XML]; }; rhosp = derive { name="rhosp"; version="1.06"; sha256="0kii29w292kffxablqnmgvl127jwsriz0p5y5d1xd6n8yzji79j3"; depends=[]; }; ri = derive { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; -riceware = derive { name="riceware"; version="0.2"; sha256="1rd64saags4s7nadpbi38h8m8mw6y44lmdi8vmg58mglkfcbqf32"; depends=[random]; }; -rich = derive { name="rich"; version="0.3"; sha256="122xb729xlm8gyb7b3glw4sdvrh98wh89528kcbibpx83bp3frc0"; depends=[boot vegan permute]; }; +riceware = derive { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; +rich = derive { name="rich"; version="0.3"; sha256="122xb729xlm8gyb7b3glw4sdvrh98wh89528kcbibpx83bp3frc0"; depends=[boot permute vegan]; }; ridge = derive { name="ridge"; version="2.1-3"; sha256="1i5klabnv328kgy7p11nwdid2x7hzl1j80yqqshbraladszyfpwk"; depends=[]; }; -rinat = derive { name="rinat"; version="0.1.4"; sha256="1m5k1wcinm6is3mf86314scgy3xfifz7ly7il5zgqyg9jkkpywbz"; depends=[httr plyr jsonlite ggplot2 maps]; }; +ridigbio = derive { name="ridigbio"; version="0.2.2"; sha256="065pad7pprax1mgqikjrl4nygyw5mjr80j21072zb7qcki9ag2k5"; depends=[httr jsonlite]; }; +rinat = derive { name="rinat"; version="0.1.4"; sha256="1m5k1wcinm6is3mf86314scgy3xfifz7ly7il5zgqyg9jkkpywbz"; depends=[ggplot2 httr jsonlite maps plyr]; }; rindex = derive { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; }; ringbuffer = derive { name="ringbuffer"; version="1.1"; sha256="1jj6zdvqlkc30bnxapg0sjl5ci5kq76611smqc4jc8adzhzwrh3f"; depends=[]; }; ringscale = derive { name="ringscale"; version="0.1.2"; sha256="1gnnapkvxmkfws8dw41gj9h3svy3h6mi4zv413aykg9vrmy7d3rp"; depends=[FITSio]; }; -rio = derive { name="rio"; version="0.2"; sha256="0v64zkxcs2bajdh9hqlhacc6msy7l3h31cvcxpj6in5hb3m1wfv3"; depends=[foreign haven openxlsx readODS jsonlite XML curl data_table readxl]; }; -rioja = derive { name="rioja"; version="0.9-5"; sha256="0bi80d8ffn1kgs0b45ia8rj057id8l3mnph16y5wc5nr8fndxrm4"; depends=[vegan mgcv lattice gdata]; }; -ripa = derive { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp Rcpp]; }; -riskRegression = derive { name="riskRegression"; version="1.1.1"; sha256="1qjy2wmbfalbxszjfplisqrdca0n0yccr0wvdf1kbzxblba82mx6"; depends=[prodlim rms pec cmprsk survival randomForestSRC]; }; +rio = derive { name="rio"; version="0.2"; sha256="0v64zkxcs2bajdh9hqlhacc6msy7l3h31cvcxpj6in5hb3m1wfv3"; depends=[curl data_table foreign haven jsonlite openxlsx readODS readxl XML]; }; +rioja = derive { name="rioja"; version="0.9-5"; sha256="0bi80d8ffn1kgs0b45ia8rj057id8l3mnph16y5wc5nr8fndxrm4"; depends=[gdata lattice mgcv vegan]; }; +ripa = derive { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp]; }; +riskRegression = derive { name="riskRegression"; version="1.1.1"; sha256="1qjy2wmbfalbxszjfplisqrdca0n0yccr0wvdf1kbzxblba82mx6"; depends=[cmprsk pec prodlim randomForestSRC rms survival]; }; riskSimul = derive { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; -risksetROC = derive { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[survival MASS]; }; -rite = derive { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[tcltk2 RCurl knitr markdown]; }; -riv = derive { name="riv"; version="2.0-4"; sha256="1c9k62plqgxcgcm2j1s26hqvgww96n6bfjz2yk7m3p2wf8gkkyam"; depends=[MASS rrcov quantreg]; }; +risksetROC = derive { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; +rite = derive { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[knitr markdown RCurl tcltk2]; }; +riv = derive { name="riv"; version="2.0-4"; sha256="1c9k62plqgxcgcm2j1s26hqvgww96n6bfjz2yk7m3p2wf8gkkyam"; depends=[MASS quantreg rrcov]; }; rivernet = derive { name="rivernet"; version="1.0"; sha256="0za5k00k9vivpq4wr1xqc4aw7mlcxhjj2b3iiip1qy13fg7bhbjm"; depends=[]; }; riverplot = derive { name="riverplot"; version="0.3"; sha256="1x02ci6744k3lsqh53vmpmv957b5wwr1idvn16nzixvzknixryq8"; depends=[]; }; -rivervis = derive { name="rivervis"; version="0.45.0"; sha256="0dc02m923l1y689rd13zxz1122l8cipr4m2cf2bw7pis7zr3m119"; depends=[]; }; -rivr = derive { name="rivr"; version="0.9.2"; sha256="1xz7l7j8adhlzdasx9ljrh8z6cx017pl6761z8q4ixpcgr3vf5ws"; depends=[Rcpp reshape2 Rcpp]; }; +rivervis = derive { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; }; +rivr = derive { name="rivr"; version="0.9.2"; sha256="1xz7l7j8adhlzdasx9ljrh8z6cx017pl6761z8q4ixpcgr3vf5ws"; depends=[Rcpp reshape2]; }; rjade = derive { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; }; rjags = derive { name="rjags"; version="3-15"; sha256="02nmaqv0xddh7bgrlwrr30gb10mcz2f5lilbyzfw6wpjgi2aihx5"; depends=[coda]; }; rje = derive { name="rje"; version="1.9"; sha256="1dyd34z6lb0p6zmyax5dpzflgc9a4saka33mvdfcxi5pj0rnygaz"; depends=[]; }; rjson = derive { name="rjson"; version="0.2.15"; sha256="1vzjyvf57k1fjizlk28rby65y5lsww5qnfvgnhln74qwda7hvl3p"; depends=[]; }; -rjstat = derive { name="rjstat"; version="0.2"; sha256="1ylwp6d3cc8xb8129yr49grx9vb4xyp62ig0qa7vzkbdplba2zr2"; depends=[jsonlite assertthat]; }; -rkafka = derive { name="rkafka"; version="1.0"; sha256="02h3nlffgd48xm38i2arlrgbilraf6r7k65s35906v33i0kjzrgg"; depends=[rJava RUnit rkafkajars]; }; +rjstat = derive { name="rjstat"; version="0.2.1"; sha256="0chb3mypmgqz7wncl01yy93xpz1mmlcc6x1cib37zxc8dy79jm1s"; depends=[assertthat jsonlite]; }; +rkafka = derive { name="rkafka"; version="1.0"; sha256="02h3nlffgd48xm38i2arlrgbilraf6r7k65s35906v33i0kjzrgg"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive { name="rkafkajars"; version="1.0"; sha256="0ss9gjjq92hba6nkhnda0pbm3a5bqm00hy0zbj4kivg5dlsf30q0"; depends=[rJava RUnit]; }; +rknn = derive { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive { name="rkt"; version="1.4"; sha256="01c8fwnml1n0sw5lw9p2nz15i1zhxirr0kh39qvjmdiw97c1v1yq"; depends=[]; }; -rkvo = derive { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp Rcpp]; }; +rkvo = derive { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; rlecuyer = derive { name="rlecuyer"; version="0.3-3"; sha256="1n0vny3k5s5152y0ggz9vfn4bqay9ncbdzkw9g4703pszrbwq7xh"; depends=[]; }; -rlist = derive { name="rlist"; version="0.4"; sha256="00h00jka64m7skrjp1454805fhr3q1k9sqih4pnvbb0maxlzgn7g"; depends=[yaml jsonlite]; }; +rlist = derive { name="rlist"; version="0.4"; sha256="00h00jka64m7skrjp1454805fhr3q1k9sqih4pnvbb0maxlzgn7g"; depends=[jsonlite yaml]; }; rlm = derive { name="rlm"; version="1.1"; sha256="147hn780hjbp8ly3mc5q05g36b080ndq0z0r0vq75c2qfkhybvdc"; depends=[]; }; -rlme = derive { name="rlme"; version="0.4"; sha256="02683sklihj3726a90jryybf855rvbz9v3dm9z9yhb32q9bfmy34"; depends=[MASS quantreg nlme mgcv stringr magic robustbase Rcpp Rcpp]; }; +rlme = derive { name="rlme"; version="0.4"; sha256="02683sklihj3726a90jryybf855rvbz9v3dm9z9yhb32q9bfmy34"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; rmaf = derive { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; }; -rmarkdown = derive { name="rmarkdown"; version="0.6.1"; sha256="1j6hz7ybyvqzd5zdshb9z1v5y5gfgdlcvzacx06c5kgf8h6i0k3h"; depends=[knitr yaml htmltools caTools]; }; -rmatio = derive { name="rmatio"; version="0.11.0"; sha256="0cmlh16nf3r94gpczq0j46g4dgjy9q1c647rqd9i14hvfrpxzcfa"; depends=[Matrix lattice]; }; +rmarkdown = derive { name="rmarkdown"; version="0.7"; sha256="19vp2kipzw073llgvnqwdaarqf1ny33803gp4rf3lhyyp7y508cg"; depends=[caTools htmltools knitr yaml]; }; +rmatio = derive { name="rmatio"; version="0.11.0"; sha256="0cmlh16nf3r94gpczq0j46g4dgjy9q1c647rqd9i14hvfrpxzcfa"; depends=[lattice Matrix]; }; rmeta = derive { name="rmeta"; version="2.16"; sha256="1s3n185kk0ddv8v6c7mbc7cpj6yg532r7is6pjf9vda7317rxywy"; depends=[]; }; -rmetasim = derive { name="rmetasim"; version="2.0.4"; sha256="1a3bhiybzdvgqnnyh3d31d6vdsp4mi33sv8ks9b9xd9r369npk86"; depends=[ape ade4 gtools]; }; -rmgarch = derive { name="rmgarch"; version="1.2-8"; sha256="19q35kzyzzs19b4xgslrnl8ihlx1wlmrwfdimnq8racfx0y46lm5"; depends=[rugarch Rsolnp MASS Matrix zoo xts Bessel ff shape pcaPP spd Rcpp Rcpp RcppArmadillo]; }; -rminer = derive { name="rminer"; version="1.4"; sha256="07s971fpl16l4ryrbb24zwy1xx6dwia1ms4hrcpnpz3kb8f6ydda"; depends=[kknn plotrix lattice nnet pls MASS mda rpart randomForest adabag party Cubist kernlab e1071]; }; +rmetasim = derive { name="rmetasim"; version="2.0.4"; sha256="1a3bhiybzdvgqnnyh3d31d6vdsp4mi33sv8ks9b9xd9r369npk86"; depends=[ade4 ape gtools]; }; +rmgarch = derive { name="rmgarch"; version="1.2-8"; sha256="19q35kzyzzs19b4xgslrnl8ihlx1wlmrwfdimnq8racfx0y46lm5"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; +rminer = derive { name="rminer"; version="1.4"; sha256="07s971fpl16l4ryrbb24zwy1xx6dwia1ms4hrcpnpz3kb8f6ydda"; depends=[adabag Cubist e1071 kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart]; }; rmngb = derive { name="rmngb"; version="0.6-1"; sha256="1wyq8jvzqpy1s6w0j77ngh5x2q7mpj0ib01m8mla20w6yr6xbqjk"; depends=[Hmisc]; }; rmongodb = derive { name="rmongodb"; version="1.8.0"; sha256="035a76ak6wi21hdvgzzbggz0qnb53rrr2wfx97ngc8ijwhw8hjh7"; depends=[jsonlite plyr]; }; rmp = derive { name="rmp"; version="1.0"; sha256="1g0785fwjbwbj82sir3n7sg3idsjzdhrpxc7z88339cv9g4rl7ry"; depends=[]; }; -rms = derive { name="rms"; version="4.3-1"; sha256="07198lzk3yzl9vnqcfxqgp5kpb50s1ydg33m883rcr3a5pd9m094"; depends=[Hmisc survival lattice ggplot2 SparseM quantreg nlme rpart polspline multcomp]; }; +rms = derive { name="rms"; version="4.3-1"; sha256="07198lzk3yzl9vnqcfxqgp5kpb50s1ydg33m883rcr3a5pd9m094"; depends=[ggplot2 Hmisc lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; rnaseqWrapper = derive { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; rnbn = derive { name="rnbn"; version="1.0.3"; sha256="05amrx12b7p4pca1wbysn1n2rxbg5r54mpmga4i3xlpijx9baj80"; depends=[httr]; }; -rncl = derive { name="rncl"; version="0.2.2"; sha256="1l9g7mylj4ip15x4985i27n42fhi9vyi1ii23dc9k27s84b274y7"; depends=[Rcpp ape Rcpp]; }; +rncl = derive { name="rncl"; version="0.2.2"; sha256="1l9g7mylj4ip15x4985i27n42fhi9vyi1ii23dc9k27s84b274y7"; depends=[ape Rcpp]; }; rneos = derive { name="rneos"; version="0.2-8"; sha256="0cg88l1irqkx7d72sa5bfqcn5fb5rapvimi1gw15klci39w0s43q"; depends=[RCurl XML]; }; rngSetSeed = derive { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; rngWELL = derive { name="rngWELL"; version="0.10-3"; sha256="1wijscc0s6h1ipc1r8h179y94s1bzf409xlpiyr1njaxvvvpwvw1"; depends=[]; }; -rngtools = derive { name="rngtools"; version="1.2.4"; sha256="1fcgfqrrb48z37xgy8sffx91p9irp39yqzxv7nqp1x2hnwsrh097"; depends=[pkgmaker stringr digest]; }; +rngtools = derive { name="rngtools"; version="1.2.4"; sha256="1fcgfqrrb48z37xgy8sffx91p9irp39yqzxv7nqp1x2hnwsrh097"; depends=[digest pkgmaker stringr]; }; rngwell19937 = derive { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; -rnoaa = derive { name="rnoaa"; version="0.3.3"; sha256="12iwyl0nr6d8xpl5vcqwli4rlh79y8l13sfj34457klqdzmrg126"; depends=[httr lubridate plyr ggplot2 scales sp RCurl rgdal rgeos maptools stringr XML data_table jsonlite digest]; }; -rnrfa = derive { name="rnrfa"; version="0.1.5"; sha256="0lpa0gmf9j9adq0p41jgayzcwg6220bihnsfqj55d217mfalbhnd"; depends=[XML2R RCurl zoo rjson rgdal sp stringr]; }; -robCompositions = derive { name="robCompositions"; version="1.9.1"; sha256="1n8mbm62ywp1wnccv85ydm91bzp05i4fjvyriid8751pcb4zndn9"; depends=[robustbase rrcov GGally MASS pls sROC]; }; +rnoaa = derive { name="rnoaa"; version="0.3.3"; sha256="12iwyl0nr6d8xpl5vcqwli4rlh79y8l13sfj34457klqdzmrg126"; depends=[data_table digest ggplot2 httr jsonlite lubridate maptools plyr RCurl rgdal rgeos scales sp stringr XML]; }; +rnrfa = derive { name="rnrfa"; version="0.1.5"; sha256="0lpa0gmf9j9adq0p41jgayzcwg6220bihnsfqj55d217mfalbhnd"; depends=[RCurl rgdal rjson sp stringr XML2R zoo]; }; +robCompositions = derive { name="robCompositions"; version="1.9.1"; sha256="1n8mbm62ywp1wnccv85ydm91bzp05i4fjvyriid8751pcb4zndn9"; depends=[GGally MASS pls robustbase rrcov sROC]; }; robcor = derive { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; robeth = derive { name="robeth"; version="2.7"; sha256="03pnwd3xjb9yv8jfav0s4l9k5pgpampp15ak7z0yvkjs20rvfq3d"; depends=[]; }; -robfilter = derive { name="robfilter"; version="4.1"; sha256="161rsqyy2gq1n6ysz0l4d4gqvxhs72hznc2d5hljxdaz3sbdzzig"; depends=[robustbase MASS lattice]; }; +robfilter = derive { name="robfilter"; version="4.1"; sha256="161rsqyy2gq1n6ysz0l4d4gqvxhs72hznc2d5hljxdaz3sbdzzig"; depends=[lattice MASS robustbase]; }; robumeta = derive { name="robumeta"; version="1.6"; sha256="13hwbl4pym3pkxxfbffhv22nn3f4spc6lb4gz1wxi9iha1s9ywi5"; depends=[]; }; -robust = derive { name="robust"; version="0.4-16"; sha256="0psai9d6w7yi0wfm57cc7b2jd5i7wbk2xagrhnvhxknw0dwzf2jh"; depends=[fit_models MASS lattice robustbase rrcov]; }; +robust = derive { name="robust"; version="0.4-16"; sha256="0psai9d6w7yi0wfm57cc7b2jd5i7wbk2xagrhnvhxknw0dwzf2jh"; depends=[fit_models lattice MASS robustbase rrcov]; }; robustDA = derive { name="robustDA"; version="1.1"; sha256="1yys6adkyms5r4sw887y78gnh97qqr7sbi5lxv5l9bnc4ggcfiz6"; depends=[MASS mclust Rsolnp]; }; -robustHD = derive { name="robustHD"; version="0.5.0"; sha256="14ql2k5880lbwkv1acydrli6jyh6dls32jjhimbz82zzkzfk2cxr"; depends=[ggplot2 perry robustbase MASS Rcpp RcppArmadillo]; }; +robustHD = derive { name="robustHD"; version="0.5.0"; sha256="14ql2k5880lbwkv1acydrli6jyh6dls32jjhimbz82zzkzfk2cxr"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; robustX = derive { name="robustX"; version="1.1-4"; sha256="1s2aav2jr22dgrl7xzk09yn9909k76kpiz271w5r1id6hpfprjwc"; depends=[robustbase]; }; -robustbase = derive { name="robustbase"; version="0.92-3"; sha256="0b7rld5pa9nrnqj7600ybvzy74lxz6s41dibamwdssh36mx6ayvb"; depends=[DEoptimR]; }; +robustbase = derive { name="robustbase"; version="0.92-4"; sha256="0dyz2wwfjq8bjjwi4fhm6v3sxmlh34bawppakl4l6dv7vpjsv85k"; depends=[DEoptimR]; }; robustfa = derive { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; -robustgam = derive { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[Rcpp RcppArmadillo mgcv robustbase Rcpp RcppArmadillo]; }; -robustlmm = derive { name="robustlmm"; version="1.6"; sha256="18lhbnmcd6nc0qr23a19mhw9k9r30li6z92g600dil6ll8s5m54z"; depends=[lme4 Matrix ggplot2 lattice nlme robustbase xtable]; }; +robustgam = derive { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; +robustlmm = derive { name="robustlmm"; version="1.7-2"; sha256="0cwr5fsl3m78xvfv3cy6n82zsdwsyq2zrlnzdppba9ja6hnh32wm"; depends=[ggplot2 lattice lme4 Matrix nlme robustbase xtable]; }; robustloggamma = derive { name="robustloggamma"; version="0.4-31"; sha256="19ycdvpzns46gjnkddwznnszs0941blpss7l0cqligv91cz7bkjc"; depends=[robustbase]; }; -robustreg = derive { name="robustreg"; version="0.1-7"; sha256="1nrz10065mwccil78c74vmkhinskpnk1vyp1ikrdw23vyk2l00nc"; depends=[Rcpp Matrix Rcpp RcppArmadillo]; }; -robustvarComp = derive { name="robustvarComp"; version="0.1-2"; sha256="187mcpih509hx15wjjr7z2h6h76mz2v0d8xgsxjd8wz7l3dnlp2f"; depends=[robustbase GSE numDeriv robust plyr]; }; +robustreg = derive { name="robustreg"; version="0.1-7"; sha256="1nrz10065mwccil78c74vmkhinskpnk1vyp1ikrdw23vyk2l00nc"; depends=[Matrix Rcpp RcppArmadillo]; }; +robustvarComp = derive { name="robustvarComp"; version="0.1-2"; sha256="187mcpih509hx15wjjr7z2h6h76mz2v0d8xgsxjd8wz7l3dnlp2f"; depends=[GSE numDeriv plyr robust robustbase]; }; rocc = derive { name="rocc"; version="1.2"; sha256="00yxbbphhwkg4sj2h7pd9vw86yavl711nk8yylwmjd3qv39qjml0"; depends=[ROCR]; }; -rockchalk = derive { name="rockchalk"; version="1.8.92"; sha256="1mi1w8323m4q0s17cnafnlswgnlxqb5c9nq3rv8fq77k7klmq5rz"; depends=[lme4 car MASS tables]; }; -rococo = derive { name="rococo"; version="1.1.2"; sha256="08204y3g3xd2srpcpnbkq1laqfr3wrhy73whlxf83gffw8j0iyv8"; depends=[Rcpp Rcpp]; }; -rodd = derive { name="rodd"; version="0.1-1"; sha256="0x7w7v04nqb1gl4h32a674gwc68h6p9pff2piisyd74cgx90sm1b"; depends=[numDeriv quadprog Matrix rootSolve matrixcalc]; }; +rockchalk = derive { name="rockchalk"; version="1.8.92"; sha256="1mi1w8323m4q0s17cnafnlswgnlxqb5c9nq3rv8fq77k7klmq5rz"; depends=[car lme4 MASS tables]; }; +rococo = derive { name="rococo"; version="1.1.2"; sha256="08204y3g3xd2srpcpnbkq1laqfr3wrhy73whlxf83gffw8j0iyv8"; depends=[Rcpp]; }; +rodd = derive { name="rodd"; version="0.1-1"; sha256="0x7w7v04nqb1gl4h32a674gwc68h6p9pff2piisyd74cgx90sm1b"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; rootSolve = derive { name="rootSolve"; version="1.6.5.1"; sha256="02ydj4ydgljs80nrrrxb4dhfa7m12rw65xy79d7g71w97326w8p2"; depends=[]; }; -ropensecretsapi = derive { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RJSONIO RCurl]; }; -ror = derive { name="ror"; version="1.2"; sha256="0n8mk35rm3rp0c7a3i961kij21a177znh9hkq4snqqlw9vf50hdg"; depends=[rJava ROI ROI_plugin_glpk igraph]; }; -rorutadis = derive { name="rorutadis"; version="0.1.3"; sha256="0ik0dpmsyb4g9wl1fb7mm0dry9s26nfvv1v91cslss82phhf16wd"; depends=[Rglpk ggplot2 gridExtra]; }; -rotations = derive { name="rotations"; version="1.3"; sha256="01qqiqlp370llk8w9g0nip08cd54rj9dsvf0qxznalyb7vpnvgxf"; depends=[ggplot2 Rcpp rgl sphereplot Rcpp RcppArmadillo]; }; -roughrf = derive { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[randomForest mice nnet]; }; +ropensecretsapi = derive { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; +ror = derive { name="ror"; version="1.2"; sha256="0n8mk35rm3rp0c7a3i961kij21a177znh9hkq4snqqlw9vf50hdg"; depends=[igraph rJava ROI ROI_plugin_glpk]; }; +rorutadis = derive { name="rorutadis"; version="0.1.3"; sha256="0ik0dpmsyb4g9wl1fb7mm0dry9s26nfvv1v91cslss82phhf16wd"; depends=[ggplot2 gridExtra Rglpk]; }; +rotationForest = derive { name="rotationForest"; version="0.1"; sha256="07my0i84jvmjxvg2ifvsrbc0r5z4s32xi0vfdwrkhhdzdn87h527"; depends=[rpart]; }; +rotations = derive { name="rotations"; version="1.3"; sha256="01qqiqlp370llk8w9g0nip08cd54rj9dsvf0qxznalyb7vpnvgxf"; depends=[ggplot2 Rcpp RcppArmadillo rgl sphereplot]; }; +roughrf = derive { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[mice nnet randomForest]; }; rowr = derive { name="rowr"; version="1.1.2"; sha256="1hvj17n3fy1jaaz551s1icjv1kgr2s22xvg4fllzs8hpgdsybp1j"; depends=[]; }; -roxygen2 = derive { name="roxygen2"; version="4.1.1"; sha256="0qr562p3jb9kqim6mj344956pikmq1137gv1p086b4k90h5c3wyd"; depends=[stringr brew digest Rcpp Rcpp]; }; -royston = derive { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[nortest moments]; }; +roxygen2 = derive { name="roxygen2"; version="4.1.1"; sha256="0qr562p3jb9kqim6mj344956pikmq1137gv1p086b4k90h5c3wyd"; depends=[brew digest Rcpp stringr]; }; +royston = derive { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; }; rpanel = derive { name="rpanel"; version="1.1-3"; sha256="1wm0dcbyvxz4ily8skz2yda44n74x2nmc4pg11ja0yvk038gjfns"; depends=[]; }; rpart = derive { name="rpart"; version="4.1-9"; sha256="108zsalgmp4mj66m2mxr56qrh3yz0pxfij81gri224r5brypqak1"; depends=[]; }; rpart_plot = derive { name="rpart.plot"; version="1.5.2"; sha256="0aw0bhd0bliih7fsvnfkdkxq65v3v3fl88irp8vxrdblqgjyc09x"; depends=[rpart]; }; rpart_utils = derive { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; }; rpartScore = derive { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; rpartitions = derive { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; }; -rpf = derive { name="rpf"; version="0.44"; sha256="1q68lb7cw4p31mrjwxyn2bkpclmgfcnln8z0brs9pkkh70j0vii8"; depends=[mvtnorm RcppEigen]; }; -rpg = derive { name="rpg"; version="1.4"; sha256="0sisn5l1qxlqg6jq4lzr7w3axkaw5jlpz8vl9gp2hs0spxsjhcyn"; depends=[Rcpp uuid RApiSerialize Rcpp RApiSerialize]; }; +rpf = derive { name="rpf"; version="0.45"; sha256="1d22wjhv14rl16kljn42j4hba30x28zd5svddrpxp1kraxjq5mn7"; depends=[mvtnorm RcppEigen]; }; +rpg = derive { name="rpg"; version="1.4"; sha256="0sisn5l1qxlqg6jq4lzr7w3axkaw5jlpz8vl9gp2hs0spxsjhcyn"; depends=[RApiSerialize Rcpp uuid]; }; rphast = derive { name="rphast"; version="1.6"; sha256="0ni8969bj3pv0wl8l0v352pqw2d5mlshsdw1rb6wlxk7qzfi5cl2"; depends=[]; }; -rplexos = derive { name="rplexos"; version="1.0"; sha256="129izg9ipn2pfm4yq0lg597nn9rcxr8m9yslmra85jmzbisc1vfw"; depends=[Rcpp dplyr RSQLite DBI data_table lubridate reshape2 stringi assertthat doParallel foreach Rcpp]; }; -rplos = derive { name="rplos"; version="0.4.7"; sha256="0d6p6cgjmfv615mpvp6vxm92gxfdi6fn4mp0ixhj2gkm1hmpwwc5"; depends=[ggplot2 httr jsonlite XML dplyr plyr lubridate reshape2 whisker solr]; }; +rplexos = derive { name="rplexos"; version="1.1.1"; sha256="1s3srk5f1ciy43vblwsy7wrwp2k2j5q52dfl4vjg69i63bh9yrpf"; depends=[data_table DBI doParallel dplyr foreach lubridate Rcpp RSQLite stringi tidyr]; }; +rplos = derive { name="rplos"; version="0.4.7"; sha256="0d6p6cgjmfv615mpvp6vxm92gxfdi6fn4mp0ixhj2gkm1hmpwwc5"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker XML]; }; rplotengine = derive { name="rplotengine"; version="1.0-5"; sha256="1wwpfnr5vi8z26alm8y5gply0y4iniagimldzy2z696djzz8p8p8"; depends=[xtable]; }; rportfolios = derive { name="rportfolios"; version="1.0"; sha256="1zcv5ddmk15l0p03nlffimlhhpcc7l1c05xl2d1xlfk58rkvqns6"; depends=[]; }; +rprime = derive { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive { name="rprintf"; version="0.1-2"; sha256="1jsn6i3ikcdbrg8g89hmb1ky3a84fykx5gpnbswplhidh2qhb9jz"; depends=[stringr]; }; rpsychi = derive { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; -rpubchem = derive { name="rpubchem"; version="1.5.0.2"; sha256="0lvi7m8jb2izsfia3c0qigsd1k1x9r02gymlwfg29pb8k10lwcjf"; depends=[XML car RCurl RJSONIO]; }; +rpubchem = derive { name="rpubchem"; version="1.5.0.2"; sha256="0lvi7m8jb2izsfia3c0qigsd1k1x9r02gymlwfg29pb8k10lwcjf"; depends=[car RCurl RJSONIO XML]; }; rpud = derive { name="rpud"; version="0.0.2"; sha256="03xddc6kh39wlcv8dvpnv4h0f5qx5cv327xip26zk7gg7pgrn05x"; depends=[]; }; rqPen = derive { name="rqPen"; version="1.1"; sha256="0da6pbzx2my052v8s9nyw0j5ljy4pfigyy82n72zp0jzhdzmq479"; depends=[quantreg]; }; -rr = derive { name="rr"; version="1.3"; sha256="00m5h01j3qb83s7bcjp4xx6pf16hjjhl0qryb929cnxn1ln0ddns"; depends=[MASS arm coda]; }; +rr = derive { name="rr"; version="1.3"; sha256="00m5h01j3qb83s7bcjp4xx6pf16hjjhl0qryb929cnxn1ln0ddns"; depends=[arm coda MASS]; }; rrBLUP = derive { name="rrBLUP"; version="4.3"; sha256="0wydh4sx7b6rcrgb3qvqh0z46pixx63711q2nf8s3c32090a5g81"; depends=[]; }; rrBlupMethod6 = derive { name="rrBlupMethod6"; version="1.3"; sha256="1qwv954mhry46ff2ax48xcmnasygi5alv8d413g3qbk2da6i0d8l"; depends=[]; }; -rrcov = derive { name="rrcov"; version="1.3-8"; sha256="0f71khnsvd95yh6y1hnl62vqjp1z3wg74g8jvg2q28v1ysk68p1b"; depends=[robustbase mvtnorm lattice cluster pcaPP]; }; -rrcovHD = derive { name="rrcovHD"; version="0.2-3"; sha256="18k5c590wbi0kmx4nl1mkv7h6339as0s4jcr9am8v9v3w4pn0xni"; depends=[rrcov robustbase pls spls pcaPP]; }; -rrcovNA = derive { name="rrcovNA"; version="0.4-7"; sha256="1b3ffcs1szwswsayz8q3w87wndd7xbcg5rqamhjr2damgialx3bq"; depends=[rrcov robustbase lattice cluster norm]; }; +rrcov = derive { name="rrcov"; version="1.3-8"; sha256="0f71khnsvd95yh6y1hnl62vqjp1z3wg74g8jvg2q28v1ysk68p1b"; depends=[cluster lattice mvtnorm pcaPP robustbase]; }; +rrcovHD = derive { name="rrcovHD"; version="0.2-3"; sha256="18k5c590wbi0kmx4nl1mkv7h6339as0s4jcr9am8v9v3w4pn0xni"; depends=[pcaPP pls robustbase rrcov spls]; }; +rrcovNA = derive { name="rrcovNA"; version="0.4-7"; sha256="1b3ffcs1szwswsayz8q3w87wndd7xbcg5rqamhjr2damgialx3bq"; depends=[cluster lattice norm robustbase rrcov]; }; rredis = derive { name="rredis"; version="1.6.9"; sha256="00fgrhyj6bai0kc18c2m1fsk9ja5c9q7m6dpsb8wsn4gs79mw3sc"; depends=[]; }; -rrlda = derive { name="rrlda"; version="1.1"; sha256="06n9jah190cz25n93jlb5zb0xrx91bjvxgswwdx9hdf0fmwrpkvz"; depends=[pcaPP mvoutlier glasso matrixcalc]; }; +rriskDistributions = derive { name="rriskDistributions"; version="2.1"; sha256="1sc0bj5sivclbq0grif99vclnlhg1k9dz4xdvng6vv392xkwbmfd"; depends=[eha mc2d msm tkrplot]; }; +rrlda = derive { name="rrlda"; version="1.1"; sha256="06n9jah190cz25n93jlb5zb0xrx91bjvxgswwdx9hdf0fmwrpkvz"; depends=[glasso matrixcalc mvoutlier pcaPP]; }; rrules = derive { name="rrules"; version="0.1-0"; sha256="0f9msp289akzricjrm8dvfbh2dihfbszr7ms4fld1cr30zssajin"; depends=[]; }; rsae = derive { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsatscan = derive { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; -rscala = derive { name="rscala"; version="1.0.4"; sha256="05pgyzin0d5lfz5rjf0c0j7b2zj7b8r1blgd126kjlvjkj1spy84"; depends=[]; }; +rscala = derive { name="rscala"; version="1.0.6"; sha256="065ll2xza09hi05w4hq35jl6y1nvwrv93ld983nxaji81z9pfgzx"; depends=[]; }; rscproxy = derive { name="rscproxy"; version="2.0-5"; sha256="1bjdv7drlnffcnyc0j8r22j7v60k1xj58bw8nk9l8wvnmngrjz86"; depends=[]; }; rsdepth = derive { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; -rsdmx = derive { name="rsdmx"; version="0.4-6"; sha256="0hsf0jkp31qfvl4pxaqxwz1fvwgmqld3rnbk9g29g5bqwld40syc"; depends=[XML RCurl plyr]; }; +rsdmx = derive { name="rsdmx"; version="0.4-6"; sha256="0hsf0jkp31qfvl4pxaqxwz1fvwgmqld3rnbk9g29g5bqwld40syc"; depends=[plyr RCurl XML]; }; rseedcalc = derive { name="rseedcalc"; version="1.2"; sha256="1di9bzwxyxm9gs14ks9z6sixi656hz9xwmq3aaqh53cjjr1ka0rc"; depends=[]; }; -rsem = derive { name="rsem"; version="0.4.5"; sha256="02vccj03bxisi2jwl31rwi4gw9i26g70aagdgg5gk8z0bys78v4d"; depends=[MASS lavaan]; }; -rsgcc = derive { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene stringr snowfall]; }; -rsig = derive { name="rsig"; version="1.0"; sha256="129k78i8kc30bzlphdb68vv3sw2k6xyiwrhw08vhzz6mf3jxlqsh"; depends=[survival BBmisc glmnet superpc Matrix]; }; -rsm = derive { name="rsm"; version="2.07"; sha256="0d1kymgmprp41xvax6c5k881dxjgf6bnvpl4mh9l1pnjdcq7pyi5"; depends=[]; }; -rsml = derive { name="rsml"; version="1.2"; sha256="1w9bqs32sn5ry5qjgnqnns56ylr59cq5kczjsssw3yvc8a8lr39x"; depends=[XML rgl]; }; -rsnps = derive { name="rsnps"; version="0.1.6"; sha256="1pqdmg1cwpm0cvr5ma7gzni88iq5kqv1w40v8iil3xvcmns8msjk"; depends=[plyr stringr httr RCurl XML jsonlite]; }; -rspa = derive { name="rspa"; version="0.1-6"; sha256="0zwmcjakpir8mvy8cvy8j85gar4s7gmizxc3z4mdrc4iadps9gqd"; depends=[editrules]; }; +rsem = derive { name="rsem"; version="0.4.6"; sha256="16nsbp4s20396h2in0zymbpmsn24gqlbik0vgv86zhy1yg1rz9ia"; depends=[lavaan MASS]; }; +rsgcc = derive { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene snowfall stringr]; }; +rsig = derive { name="rsig"; version="1.0"; sha256="129k78i8kc30bzlphdb68vv3sw2k6xyiwrhw08vhzz6mf3jxlqsh"; depends=[BBmisc glmnet Matrix superpc survcomp survival]; }; +rsm = derive { name="rsm"; version="2.7-2"; sha256="0pn018n36h1xhhlsimggbfgfgl9nh5a49x8amkqy3drrnamjl577"; depends=[]; }; +rsml = derive { name="rsml"; version="1.2"; sha256="1w9bqs32sn5ry5qjgnqnns56ylr59cq5kczjsssw3yvc8a8lr39x"; depends=[rgl XML]; }; +rsnps = derive { name="rsnps"; version="0.1.6"; sha256="1pqdmg1cwpm0cvr5ma7gzni88iq5kqv1w40v8iil3xvcmns8msjk"; depends=[httr jsonlite plyr RCurl stringr XML]; }; +rspa = derive { name="rspa"; version="0.1-7"; sha256="0hmdfj1cgy9fjfbrs8qvx79fkv5v1xr6vrwjp89lq0blhsnzn5k2"; depends=[editrules]; }; rspear = derive { name="rspear"; version="0.1-2"; sha256="1rjg84plnvlcp3p2929f1afl43lb92d3bfsvlhsaw92z7iva1vad"; depends=[plyr]; }; rstackdeque = derive { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; rstiefel = derive { name="rstiefel"; version="0.10"; sha256="0b2sdgpb3hzal34gd9ldd7aihlhl3wndg4i4b3wy6rrrjkficrl1"; depends=[]; }; rstream = derive { name="rstream"; version="1.3.2"; sha256="1habswhdlx7l92s9p9554px4kf9f9mhk5vkdq2fv4wk3381c0fgi"; depends=[]; }; rstudioapi = derive { name="rstudioapi"; version="0.3.1"; sha256="0q7671d924nzqsqhs8d9p7l907bcam56wjwm7vvz44xgj0saj8bs"; depends=[]; }; -rsubgroup = derive { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[rJava foreign]; }; -rsunlight = derive { name="rsunlight"; version="0.3.0"; sha256="148byg8180657ny01xny28sdawbq87hf89f8c1rzfjl5qwcxmbqd"; depends=[httr plyr jsonlite stringr assertthat]; }; -rtable = derive { name="rtable"; version="0.1.0"; sha256="1jp7bd782ply2xb8p8xnmrds2w62bp7l2v4vlvbv1468kxhlfgf2"; depends=[xtable ReporteRs knitr tidyr shiny]; }; +rsubgroup = derive { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; }; +rsunlight = derive { name="rsunlight"; version="0.3.0"; sha256="148byg8180657ny01xny28sdawbq87hf89f8c1rzfjl5qwcxmbqd"; depends=[assertthat httr jsonlite plyr stringr]; }; +rtable = derive { name="rtable"; version="0.1.0"; sha256="1jp7bd782ply2xb8p8xnmrds2w62bp7l2v4vlvbv1468kxhlfgf2"; depends=[knitr ReporteRs shiny tidyr xtable]; }; rtape = derive { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; -rtdists = derive { name="rtdists"; version="0.2-6"; sha256="1f2yv4qq27i1fc0ys3kk31lsnbdzrmrk44widnxd19hxn4r05cs6"; depends=[evd msm gsl]; }; -rtematres = derive { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[XML RCurl plyr gdata]; }; -rtf = derive { name="rtf"; version="0.4-11"; sha256="04z0s5l9qjlbqahmqdaqv7mkqavsz4yz25swahh99xfwp9plknfl"; depends=[R_oo R_methodsS3]; }; +rtdists = derive { name="rtdists"; version="0.2-6"; sha256="1f2yv4qq27i1fc0ys3kk31lsnbdzrmrk44widnxd19hxn4r05cs6"; depends=[evd gsl msm]; }; +rtematres = derive { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; +rtf = derive { name="rtf"; version="0.4-11"; sha256="04z0s5l9qjlbqahmqdaqv7mkqavsz4yz25swahh99xfwp9plknfl"; depends=[R_methodsS3 R_oo]; }; rtfbs = derive { name="rtfbs"; version="0.3.4"; sha256="1z5rhxgi44xdv07g3l18ricxdmp1p59jl8fxawrh5jr83qpcxsks"; depends=[rphast]; }; rtiff = derive { name="rtiff"; version="1.4.4"; sha256="13cz35dfz735yk2lci8cmjmsg4ddm31lv98lpx8ymy3bwmzdmc3c"; depends=[pixmap]; }; -rtkpp = derive { name="rtkpp"; version="0.8.6"; sha256="0alg3002q8mcqd55prmsa6hfwg0qfrv30aq5p85v094l8cl7qd8l"; depends=[Rcpp Rcpp]; }; -rtop = derive { name="rtop"; version="0.3-45"; sha256="0dh7jlnakk1hd27swspa0fj6pq6yddxhz32w3d7xq8jgr7xm8d70"; depends=[sp gstat]; }; +rtkpp = derive { name="rtkpp"; version="0.8.6"; sha256="0alg3002q8mcqd55prmsa6hfwg0qfrv30aq5p85v094l8cl7qd8l"; depends=[Rcpp]; }; +rtop = derive { name="rtop"; version="0.3-45"; sha256="0dh7jlnakk1hd27swspa0fj6pq6yddxhz32w3d7xq8jgr7xm8d70"; depends=[gstat sp]; }; rts = derive { name="rts"; version="1.0-3"; sha256="0jqk0p2q1vx9l6zf9pbc5k3lsw4hg5x1r6p0f7wjiks50x55pbl4"; depends=[raster xts zoo]; }; rtype = derive { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; rucm = derive { name="rucm"; version="0.4"; sha256="1s3q6wfp9nb50rqsaq6h2wb48qvxncmlf8l4gm18pr25wkangfxq"; depends=[KFAS]; }; -rugarch = derive { name="rugarch"; version="1.3-4"; sha256="1za92hqfaws8azf2zml1q8mlbirrdw3rb4rvwg6sclfx7z7gsqkh"; depends=[Rsolnp nloptr ks numDeriv spd xts zoo chron SkewHyperbolic expm Rcpp Rcpp RcppArmadillo]; }; -runjags = derive { name="runjags"; version="2.0.1-4"; sha256="1any5f7paf8a8yyvk594iixvh1l1dc87pil292sd1pq1lh2510lw"; depends=[lattice coda]; }; -ruv = derive { name="ruv"; version="0.9.4"; sha256="07bvyqrkm10vh63l8dm93spd7l0v105a87lsbjw4vg65czp1iayg"; depends=[]; }; +rugarch = derive { name="rugarch"; version="1.3-4"; sha256="1za92hqfaws8azf2zml1q8mlbirrdw3rb4rvwg6sclfx7z7gsqkh"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; +runjags = derive { name="runjags"; version="2.0.1-4"; sha256="1any5f7paf8a8yyvk594iixvh1l1dc87pil292sd1pq1lh2510lw"; depends=[coda lattice]; }; +ruv = derive { name="ruv"; version="0.9.5"; sha256="19n2zrbfg6kzks395iiv1wbz2zf1j25aap3iy3d8yspmasqxi93x"; depends=[]; }; rv = derive { name="rv"; version="2.3.1"; sha256="0bjqwk7djl625fws3jlzr1naanwmrfb37hzkyy5szai52nqr2xij"; depends=[]; }; rvHPDT = derive { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive { name="rvalues"; version="0.3"; sha256="0fkf0gngrx1rfa67blzf3xxjwhlp2m2jplxw3z3j9vgl6ray0nqs"; depends=[]; }; -rversions = derive { name="rversions"; version="1.0.0"; sha256="0k9v77bpxbxxmf5bdansg074zx3cm4hhaw6vl9f6c58xzxl567nf"; depends=[RCurl XML]; }; -rvertnet = derive { name="rvertnet"; version="0.2.2"; sha256="14afdf0mflpa2arxdy44y8mak9j3cg2cgk97idd7k4pi8vf6q0jg"; depends=[plyr jsonlite httr data_table ggplot2 maps]; }; -rvest = derive { name="rvest"; version="0.2.0"; sha256="1bg9l0wzh9xs7rpacl8s6q33hkjvv85vsl8079qsri0lr856wni7"; depends=[httr XML selectr magrittr]; }; +rversions = derive { name="rversions"; version="1.0.1"; sha256="1qqar1cg8218dr4hp09629jx6yvwcnwxzp8grnqcmhbc5xyx76ch"; depends=[curl xml2]; }; +rvertnet = derive { name="rvertnet"; version="0.2.2"; sha256="14afdf0mflpa2arxdy44y8mak9j3cg2cgk97idd7k4pi8vf6q0jg"; depends=[data_table ggplot2 httr jsonlite maps plyr]; }; +rvest = derive { name="rvest"; version="0.2.0"; sha256="1bg9l0wzh9xs7rpacl8s6q33hkjvv85vsl8079qsri0lr856wni7"; depends=[httr magrittr selectr XML]; }; rvgtest = derive { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; -rworldmap = derive { name="rworldmap"; version="1.3-1"; sha256="0wrg6ap39bq88sv5axxd90yyqafn77amk5429pxd9v5a2hdm3g8w"; depends=[sp maptools fields]; }; +rworldmap = derive { name="rworldmap"; version="1.3-1"; sha256="0wrg6ap39bq88sv5axxd90yyqafn77amk5429pxd9v5a2hdm3g8w"; depends=[fields maptools sp]; }; rworldxtra = derive { name="rworldxtra"; version="1.01"; sha256="183z01h316wf1r4vjvjhbj7cg4xarn4b8qbmnn5y7nrrdndzi163"; depends=[sp]; }; rwt = derive { name="rwt"; version="1.0.0"; sha256="112wp682z4gkxsd3bqnlkdrh42bfzwnnhzyangxi2dh0qw63bgcr"; depends=[matlab]; }; -ryouready = derive { name="ryouready"; version="0.3"; sha256="0nms3zfkis2fsxkyj3dr95vz3kk6pkm7l5ga7iz8pxy1ywrawj2i"; depends=[stringr car]; }; -rysgran = derive { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[soiltexture lattice]; }; +ryouready = derive { name="ryouready"; version="0.3"; sha256="0nms3zfkis2fsxkyj3dr95vz3kk6pkm7l5ga7iz8pxy1ywrawj2i"; depends=[car stringr]; }; +rysgran = derive { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; }; rzmq = derive { name="rzmq"; version="0.7.7"; sha256="0gf8gpwidfn4756jqbpdbqsl8l4ahi3jgavrrvbbdi841rxggfmx"; depends=[]; }; s20x = derive { name="s20x"; version="3.1-16"; sha256="10z19q28wv3jnrs8lhban4a6hxqxgivcalq633p3hpa4zhw7nsj7"; depends=[]; }; -s2dverification = derive { name="s2dverification"; version="2.1.1"; sha256="1m3m5sbq96fhnl4slxgb2j0009kqfdivdn3nbb203pc0knjpflnq"; depends=[GEOmap geomapdata maps mapproj]; }; +s2dverification = derive { name="s2dverification"; version="2.1.1"; sha256="1m3m5sbq96fhnl4slxgb2j0009kqfdivdn3nbb203pc0knjpflnq"; depends=[GEOmap geomapdata mapproj maps]; }; s4vd = derive { name="s4vd"; version="1.0"; sha256="07pnkhyqf9iymj913813d93dmb3iqbdlcl0gsgacihyyinb4id5s"; depends=[biclust]; }; sBF = derive { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; }; sExtinct = derive { name="sExtinct"; version="1.1"; sha256="1l6232z6c4z3cfl1da94wa6hlv9hj5mcb85fj1y0yparkvvl8249"; depends=[lattice]; }; -sGPCA = derive { name="sGPCA"; version="1.0"; sha256="16aa5jgvkabrlxaf1p7ngrls79mksarh6di3vp26kb3d3wx087dx"; depends=[Matrix fields]; }; +sGPCA = derive { name="sGPCA"; version="1.0"; sha256="16aa5jgvkabrlxaf1p7ngrls79mksarh6di3vp26kb3d3wx087dx"; depends=[fields Matrix]; }; sROC = derive { name="sROC"; version="0.1-2"; sha256="0cp6frhk9ndffb454dqp8fzjrla76dbz0mn4y8zz1nbq1jzmz0d3"; depends=[]; }; sac = derive { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; }; saccades = derive { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; -sadists = derive { name="sadists"; version="0.2.0"; sha256="156a1xzii2nkfismwbrfli5yxz52alpkqdi7maqlx9b1qrpybmhs"; depends=[PDQutils hypergeo orthopolynom]; }; -sads = derive { name="sads"; version="0.1.10"; sha256="02662vbbk3jikp506ljil9zqchs6bq3lsw4fwbbi2wgg7xvb260g"; depends=[MASS bbmle poilog VGAM untb]; }; -sae = derive { name="sae"; version="1.0-5"; sha256="05jvzq4cqb78pgdlxf8vlanx3v10n5njlw7g666nrnziy9ak8z4f"; depends=[nlme MASS]; }; +sadists = derive { name="sadists"; version="0.2.1"; sha256="0m3rlbhgzl0xvx8bcaswbi9nsrgfhdmkywx7ynayl6q0lmslhk6a"; depends=[hypergeo orthopolynom PDQutils]; }; +sads = derive { name="sads"; version="0.2.1"; sha256="08rr3ixz6phrpdwpqk08sk8a5znggd84d7wc1zpm62kfppy0d2hc"; depends=[bbmle GUILDS MASS poilog VGAM]; }; +sae = derive { name="sae"; version="1.0-5"; sha256="05jvzq4cqb78pgdlxf8vlanx3v10n5njlw7g666nrnziy9ak8z4f"; depends=[MASS nlme]; }; sae2 = derive { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; }; -saeSim = derive { name="saeSim"; version="0.7.0"; sha256="03zfw18fvx8blh9iijh3rnglg8zbsvd9dq3kqv6ajz3hwr90z29g"; depends=[dplyr functional ggplot2 MASS spdep parallelMap]; }; +saeSim = derive { name="saeSim"; version="0.7.0"; sha256="03zfw18fvx8blh9iijh3rnglg8zbsvd9dq3kqv6ajz3hwr90z29g"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; saemix = derive { name="saemix"; version="1.2"; sha256="1whwn54iiapdfig6qpzji3z3skir6jrs34dq78zlynibgrg95hx6"; depends=[]; }; saery = derive { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; safi = derive { name="safi"; version="1.0"; sha256="1km58w57kdmyfj4a97zhnjcka4q4pxm8r2br01qq2niaihpbzp98"; depends=[]; }; -sampSurf = derive { name="sampSurf"; version="0.7-2"; sha256="1bj1m5c8bx8i4jyk6kdgcfmgfj15iirxwg259r0c4fk7whcnfz59"; depends=[sp raster rasterVis boot]; }; -sampleSelection = derive { name="sampleSelection"; version="1.0-2"; sha256="1hzvvwvqp6v9d6ldm17kx3g8pbgngw2pxklny0b3man47zh5jshc"; depends=[maxLik miscTools systemfit Formula]; }; +sampSurf = derive { name="sampSurf"; version="0.7-3"; sha256="165y2z9bhf7cyrh177fk87apqpgzyn69gf53f9mmii931cyykihw"; depends=[boot raster rasterVis sp]; }; +sampleSelection = derive { name="sampleSelection"; version="1.0-2"; sha256="1hzvvwvqp6v9d6ldm17kx3g8pbgngw2pxklny0b3man47zh5jshc"; depends=[Formula maxLik miscTools systemfit]; }; samplesize4surveys = derive { name="samplesize4surveys"; version="2.4.0.900"; sha256="199g2gsbv1w1acn7nnlv2wbrhq7lc1mx8vvs1w9a9a8dkxdmml0g"; depends=[TeachingSampling]; }; -sampling = derive { name="sampling"; version="2.6"; sha256="11r8p29kwc0ggycbv7sm1zmazmfm4p5207l764ad4znjib0cab6p"; depends=[MASS lpSolve]; }; +sampling = derive { name="sampling"; version="2.6"; sha256="11r8p29kwc0ggycbv7sm1zmazmfm4p5207l764ad4znjib0cab6p"; depends=[lpSolve MASS]; }; samplingEstimates = derive { name="samplingEstimates"; version="0.1-3"; sha256="1srdchlpxksfdqhf5qdvl7nz0qsxkxww7hzqj0q71asbzlq3am3p"; depends=[samplingVarEst]; }; samplingVarEst = derive { name="samplingVarEst"; version="0.9-9"; sha256="04wgsq3sh69iy8p07ch210p22n5mds7cxp5s6zggzamqpf0hpnw7"; depends=[]; }; samplingbook = derive { name="samplingbook"; version="1.2.0"; sha256="1vynz6hsnz5d0vg66f8k67h24rb809k9chb4waymk6vwnp8lksz9"; depends=[pps sampling survey]; }; -samr = derive { name="samr"; version="2.0"; sha256="0rsfca07pvmhfn7b49yk2ycw00wsq6dmrpv9haxz8q0xv7n5n2q9"; depends=[matrixStats]; }; +samr = derive { name="samr"; version="2.0"; sha256="0rsfca07pvmhfn7b49yk2ycw00wsq6dmrpv9haxz8q0xv7n5n2q9"; depends=[impute matrixStats]; }; sand = derive { name="sand"; version="1.0.2"; sha256="1y371ds86gcq2id996vp56h5dax2wm0mlk1ks2mp1k81n63l7wmf"; depends=[igraph igraphdata]; }; sandwich = derive { name="sandwich"; version="2.3-3"; sha256="1x2x0yxlrhdfyhk6jw4pim03yl5mg1wsi8cxxpbf9x4p68vd0w8y"; depends=[zoo]; }; sanitizers = derive { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; @@ -5770,156 +5901,162 @@ saws = derive { name="saws"; version="0.9-6.1"; sha256="0w40j6xczqs74z1z3na4510w sbgcop = derive { name="sbgcop"; version="0.975"; sha256="0f47mvwbsym4khwgl0ic3pqkw3jwdah9a48qi3q93d46p2xich61"; depends=[]; }; sbioPN = derive { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; }; sca = derive { name="sca"; version="0.8-9"; sha256="024yxm1rlyz3hx9viv2nb6rapy938diaknc3nzkgq0ffky2gf0s3"; depends=[]; }; -scaRabee = derive { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[neldermead lattice deSolve]; }; +scaRabee = derive { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; }; scagnostics = derive { name="scagnostics"; version="0.2-4"; sha256="0fhc7d2nfhm8w6s6z1ls6i8d7c90h4q7rb92rz8pgq3xh031hpcf"; depends=[rJava]; }; -scales = derive { name="scales"; version="0.2.4"; sha256="08dryii8ibh16wxs61pam07b24rwhqvdcdhk09mij289l309192v"; depends=[RColorBrewer dichromat munsell plyr labeling]; }; +scales = derive { name="scales"; version="0.2.5"; sha256="12xrmn1vh64dl46bq7n7pa427aicb2ifjrby9in3m32nyvir0kac"; depends=[dichromat labeling munsell plyr RColorBrewer Rcpp]; }; scalreg = derive { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; }; -scam = derive { name="scam"; version="1.1-8"; sha256="1190xdahr4cx50qn32lxqm3p8m9c3968qx6f5mpyicaw34j9whz4"; depends=[mgcv Matrix]; }; +scam = derive { name="scam"; version="1.1-8"; sha256="1190xdahr4cx50qn32lxqm3p8m9c3968qx6f5mpyicaw34j9whz4"; depends=[Matrix mgcv]; }; scape = derive { name="scape"; version="2.2-0"; sha256="0dgbh65fg6i5x4lpfkshn382zcc4jk1wp62pwd2l2f59pyfb92a3"; depends=[coda Hmisc lattice]; }; scar = derive { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatterplot3d = derive { name="scatterplot3d"; version="0.3-35"; sha256="1w0r7cyz01rzmgcf2x7wa4xs88ga6fd67wksyjyzrh2pdcbc56yx"; depends=[]; }; schoRsch = derive { name="schoRsch"; version="1.1"; sha256="0bi2vn9qr49yy3g45xgglqn1b5b6z8cbn9phzmqjc1v7rn80s5zg"; depends=[]; }; -scholar = derive { name="scholar"; version="0.1.2"; sha256="1h1a6psgmiifi7p87ar3fr0mcfmg44yh4683dmqxrxrfcvgaxvca"; depends=[stringr plyr R_cache XML]; }; +scholar = derive { name="scholar"; version="0.1.2"; sha256="1h1a6psgmiifi7p87ar3fr0mcfmg44yh4683dmqxrxrfcvgaxvca"; depends=[plyr R_cache stringr XML]; }; schoolmath = derive { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; schwartz97 = derive { name="schwartz97"; version="0.0.6"; sha256="0l34f30l75zrg3n377jp0cw7m88cqkgzy6ql78mrx8ra88aspfzn"; depends=[FKF mvtnorm RUnit]; }; -scidb = derive { name="scidb"; version="1.2-0"; sha256="17y1bml8kb896l3hsw356qdj25sfbdvm10dyxhaafdgcbp5ywcrn"; depends=[Matrix iterators RCurl zoo digest]; }; +scidb = derive { name="scidb"; version="1.2-0"; sha256="17y1bml8kb896l3hsw356qdj25sfbdvm10dyxhaafdgcbp5ywcrn"; depends=[digest iterators Matrix RCurl zoo]; }; scio = derive { name="scio"; version="0.6.1"; sha256="0h15sscv7k3j7qyr70h00n58i5f44k96qg263mxcdjk9mwqr0y65"; depends=[]; }; sciplot = derive { name="sciplot"; version="1.1-0"; sha256="0na4qkslg3lns439q1124y4fl68dgqjck60a7yvgxc76p355spl4"; depends=[]; }; +score = derive { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; scoring = derive { name="scoring"; version="0.5-1"; sha256="0vxjcbp43h2ipc428qc0gx7nh6my7202hixwhnmspl4f3kai3wkp"; depends=[]; }; scout = derive { name="scout"; version="1.0.3"; sha256="0wmjmk0ckd211cq5ykd0yzjschs7fkg04w67arl4pwma0z5z56lq"; depends=[glasso lars]; }; -scrapeR = derive { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[XML RCurl]; }; +scrapeR = derive { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; }; scrime = derive { name="scrime"; version="1.3.3"; sha256="1vp7ai10m0f3s0hywyqh0yllxj6z6p795zqpr6vp58fh6yq20x73"; depends=[]; }; scriptests = derive { name="scriptests"; version="1.0-15"; sha256="1f55rnz4zbywyn79l2ac2600k95fwxgnyh1wzxvyxjh4qcg50plv"; depends=[]; }; -scrm = derive { name="scrm"; version="1.5.0-1"; sha256="176k3qmlfs1cj8gm421p3hivs434xvm6ch3gva7x7766vz5mxi39"; depends=[Rcpp Rcpp]; }; -scrypt = derive { name="scrypt"; version="0.1.0"; sha256="1hc1rziigwggdx2pvklldkw88mdzbwa8b8a2a0ip4cm1w6flsl9n"; depends=[Rcpp Rcpp]; }; +scrm = derive { name="scrm"; version="1.6.0-2"; sha256="1a3m56j4ca526mjhc7h0967k5bja336dw1bpna119l5yic6hkc1n"; depends=[Rcpp]; }; +scrypt = derive { name="scrypt"; version="0.1.0"; sha256="1hc1rziigwggdx2pvklldkw88mdzbwa8b8a2a0ip4cm1w6flsl9n"; depends=[Rcpp]; }; scuba = derive { name="scuba"; version="1.7-0"; sha256="11mdc8pj552ag36ib4sfbjv8r0psa6wnb13spz0v3rbaslz25hpw"; depends=[]; }; -sda = derive { name="sda"; version="1.3.6"; sha256="1igdkgpxlni4d8h5k912aikbd66jqkabzq144xlgd2vp3kcbw4ly"; depends=[entropy corpcor fdrtool]; }; -sdcMicro = derive { name="sdcMicro"; version="4.5.0"; sha256="1cz34g6si7f8kgybcvcsr0lkcspqp3vrkvfqsfdjd0mb8lv5pbjj"; depends=[brew knitr data_table xtable car robustbase cluster MASS e1071 Rcpp sets Rcpp]; }; -sdcMicroGUI = derive { name="sdcMicroGUI"; version="1.2.0"; sha256="0bhrpric17y1ljm18a00i6bkxfq1cpljfkib8qbb4jyj5s50f3ps"; depends=[sdcMicro gWidgetsRGtk2 gWidgets cairoDevice vcd foreign Hmisc]; }; -sdcTable = derive { name="sdcTable"; version="0.18.0"; sha256="13k96ahz6vzvbnvca18p0r1pv9k6sdmxbq04cf76an7r2g4w6kji"; depends=[stringr Rcpp Rglpk lpSolveAPI data_table Rcpp]; }; -sdcTarget = derive { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[magic foreach doParallel tuple]; }; +sda = derive { name="sda"; version="1.3.6"; sha256="1igdkgpxlni4d8h5k912aikbd66jqkabzq144xlgd2vp3kcbw4ly"; depends=[corpcor entropy fdrtool]; }; +sdcMicro = derive { name="sdcMicro"; version="4.5.0"; sha256="1cz34g6si7f8kgybcvcsr0lkcspqp3vrkvfqsfdjd0mb8lv5pbjj"; depends=[brew car cluster data_table e1071 knitr MASS Rcpp robustbase sets xtable]; }; +sdcMicroGUI = derive { name="sdcMicroGUI"; version="1.2.0"; sha256="0bhrpric17y1ljm18a00i6bkxfq1cpljfkib8qbb4jyj5s50f3ps"; depends=[cairoDevice foreign gWidgets gWidgetsRGtk2 Hmisc sdcMicro vcd]; }; +sdcTable = derive { name="sdcTable"; version="0.18.1"; sha256="18l6d6q6pawvswj1v9mfmcg4m94dkp38yd2mnndz9l7qmvf6n7kx"; depends=[data_table lpSolveAPI Rcpp Rglpk stringr]; }; +sdcTarget = derive { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sddpack = derive { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; -sde = derive { name="sde"; version="2.0.13"; sha256="194dkwrww9win5chhlffjv1xkhpxx2bcv6hf81xaqk7pdf7ifj80"; depends=[MASS fda zoo]; }; +sde = derive { name="sde"; version="2.0.13"; sha256="194dkwrww9win5chhlffjv1xkhpxx2bcv6hf81xaqk7pdf7ifj80"; depends=[fda MASS zoo]; }; sdef = derive { name="sdef"; version="1.5"; sha256="1xmx3nfjjfh6zw1vq7iip4rnshh40azja83xyvnz04jcv574vhxm"; depends=[]; }; -sdmvspecies = derive { name="sdmvspecies"; version="0.3.1"; sha256="1rpbj55598862vb4bwrvcbskm10xibsvx58fpvkn58zbm6ab2534"; depends=[GPArotation ggplot2 psych raster]; }; +sdmvspecies = derive { name="sdmvspecies"; version="0.3.1"; sha256="1rpbj55598862vb4bwrvcbskm10xibsvx58fpvkn58zbm6ab2534"; depends=[ggplot2 GPArotation psych raster]; }; sdnet = derive { name="sdnet"; version="2.03.3"; sha256="1884pil3brm7llczacxda6gki501ddyc5m8ggqjix64kbvw37slv"; depends=[]; }; -sdprisk = derive { name="sdprisk"; version="1.1-0"; sha256="03nbvrrgzcnczj1zsnqakjy278bg15vva6yb35clks5zyipl0qdk"; depends=[numDeriv PolynomF rootSolve]; }; +sdprisk = derive { name="sdprisk"; version="1.1-3"; sha256="1rwzi112fjckzxmhagpg60qm9a35fqx8g8xaypxsmnml6q00ysiq"; depends=[numDeriv PolynomF rootSolve]; }; sdtoolkit = derive { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive { name="sdwd"; version="1.0.1"; sha256="1df8xx538ba3axi0jbkvyrdl7qnmkvh1x15kh57jmw3qbpf5gh56"; depends=[Matrix]; }; seacarb = derive { name="seacarb"; version="3.0.6"; sha256="0xhyy8nd20f29j9y3x250fq8qp57gdv61gg4ck24v4jbl8qvwhla"; depends=[oce]; }; sealasso = derive { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; searchable = derive { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; }; seas = derive { name="seas"; version="0.4-3"; sha256="1n0acg6fvaym4nx1ihw0vmb79csds0k4x9427qmcyxbl9hxxmllp"; depends=[]; }; -season = derive { name="season"; version="0.3-5"; sha256="08f382kq51r5g9p5hsnjf17dwivhx1vfgmmwp1vzmbqx1drlqkzx"; depends=[ggplot2 MASS mgcv survival coda]; }; +season = derive { name="season"; version="0.3-5"; sha256="08f382kq51r5g9p5hsnjf17dwivhx1vfgmmwp1vzmbqx1drlqkzx"; depends=[coda ggplot2 MASS mgcv survival]; }; seasonal = derive { name="seasonal"; version="0.90.0"; sha256="0r5l69vl0lqi9hdxi90wx22v38p3izwx3cn124awzlak49i2qn0l"; depends=[]; }; -seawaveQ = derive { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[survival NADA lubridate]; }; -secr = derive { name="secr"; version="2.9.4"; sha256="0g7j68ys9dd8rz1y8wsmy3lwwxpwwkps6wpx67l86lzz99nwh64g"; depends=[abind MASS nlme sp mgcv raster]; }; -secrdesign = derive { name="secrdesign"; version="2.3.0"; sha256="1f5swggkky721z0js2jr1gb3mrx9h6qlld70bjd86x9f73s9cm0n"; depends=[secr abind]; }; -secrlinear = derive { name="secrlinear"; version="1.0.5"; sha256="084d0spshf3lh1m50kyb0r8x9lz4yrfj6b7snywffxhqyjw147hf"; depends=[secr sp igraph maptools MASS]; }; +seawaveQ = derive { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; }; +secr = derive { name="secr"; version="2.9.5"; sha256="0qm3blx9m8frxzb5dqxw98ijq5f5gaxn194kcrbiz3wxfqswhn3f"; depends=[abind MASS mgcv nlme raster sp]; }; +secrdesign = derive { name="secrdesign"; version="2.3.0"; sha256="1f5swggkky721z0js2jr1gb3mrx9h6qlld70bjd86x9f73s9cm0n"; depends=[abind secr]; }; +secrlinear = derive { name="secrlinear"; version="1.0.5"; sha256="084d0spshf3lh1m50kyb0r8x9lz4yrfj6b7snywffxhqyjw147hf"; depends=[igraph maptools MASS secr sp]; }; seedy = derive { name="seedy"; version="1.2"; sha256="1m800b2faaih4xjsl3jwrqd177jjygbvrf9mb1h84hdzy095b5c0"; depends=[]; }; -seeg = derive { name="seeg"; version="1.0"; sha256="1d45vl075p4qbd74gpaa8aw1h82p9n633fym10yp9bmcv4gwksg6"; depends=[car spatstat sgeostat]; }; +seeg = derive { name="seeg"; version="1.0"; sha256="1d45vl075p4qbd74gpaa8aw1h82p9n633fym10yp9bmcv4gwksg6"; depends=[car sgeostat spatstat]; }; seem = derive { name="seem"; version="1.0"; sha256="0cjdi9c89bqvrx9gzxph958cfqicc1qfnzsair0gvsk3cxsrw6bf"; depends=[]; }; seewave = derive { name="seewave"; version="1.7.6"; sha256="1sh2i9hb8v0awhczvkj803lmdvg5p1fla685xb3s2a3if1q5zc5i"; depends=[fftw tuneR]; }; seg = derive { name="seg"; version="0.5-1"; sha256="0gsdbq7b5wpknhlilrw771japr63snvx4vpirvzph4fjyby1c7rg"; depends=[sp splancs]; }; -segmag = derive { name="segmag"; version="1.2.2"; sha256="130saznhssg0qsc34fcw80x92mmqhjgizrb4fxpjsg7a8jjrclp8"; depends=[Rcpp Rcpp]; }; +segmag = derive { name="segmag"; version="1.2.2"; sha256="130saznhssg0qsc34fcw80x92mmqhjgizrb4fxpjsg7a8jjrclp8"; depends=[Rcpp]; }; segmented = derive { name="segmented"; version="0.5-1.1"; sha256="0rkbhg8wwqk08jfd29sh4ifx427kmd4mfqrssllckha9hcglqhz7"; depends=[]; }; -seismicRoll = derive { name="seismicRoll"; version="1.0.1"; sha256="1lls2gbx994j7y3kwpf00ngga5qlzqxwc3cy9x21gy9iq2s8hn0x"; depends=[Rcpp Rcpp]; }; +seismic = derive { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; +seismicRoll = derive { name="seismicRoll"; version="1.0.1"; sha256="1lls2gbx994j7y3kwpf00ngga5qlzqxwc3cy9x21gy9iq2s8hn0x"; depends=[Rcpp]; }; selectMeta = derive { name="selectMeta"; version="1.0.7"; sha256="1ibiiddl9km8dahfc3kdpl42k43fx4mqgqibxgv5q8zbcp2829p9"; depends=[DEoptim]; }; selectiongain = derive { name="selectiongain"; version="2.0.40"; sha256="1xzvz747242wfv789dl3gqvgbc8l1c4i2r3p95766ypcjw51j55d"; depends=[mvtnorm]; }; -selectr = derive { name="selectr"; version="0.2-3"; sha256="1ppm1f6mwfwbq92iwacyjn46k1d8148j4zykmjvw8as6c8blgap1"; depends=[XML stringr]; }; -selectspm = derive { name="selectspm"; version="0.1"; sha256="0bihyjaacpyjnm5vznix8krw2sqmy62in33hmb5yj4yidwz1gpv0"; depends=[spatstat ecespa]; }; +selectr = derive { name="selectr"; version="0.2-3"; sha256="1ppm1f6mwfwbq92iwacyjn46k1d8148j4zykmjvw8as6c8blgap1"; depends=[stringr XML]; }; +selectspm = derive { name="selectspm"; version="0.1"; sha256="0bihyjaacpyjnm5vznix8krw2sqmy62in33hmb5yj4yidwz1gpv0"; depends=[ecespa spatstat]; }; +selfea = derive { name="selfea"; version="1.0"; sha256="02ncccyjgdpp9hkd278jg8x1c3566fqhfmmh423596b1slzs8gqm"; depends=[MASS plyr pwr]; }; selfingTree = derive { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; -sem = derive { name="sem"; version="3.1-5"; sha256="093kklhl9fnawpwj3km1q0px6fm40kc3vg7kw93y3yb6hniwla35"; depends=[matrixcalc]; }; -semGOF = derive { name="semGOF"; version="0.2-0"; sha256="1lsv72yaza80jqadmah7v2cpfqfay57y12hcz6brvia6bmr5qagb"; depends=[sem MASS matrixcalc]; }; +sem = derive { name="sem"; version="3.1-6"; sha256="1gx0j3ignpmgy3qvnp0qjmhlzbxj0wjfr6jfs9d29cnq8b38p73c"; depends=[boot DiagrammeR MASS matrixcalc mi]; }; +semGOF = derive { name="semGOF"; version="0.2-0"; sha256="1lsv72yaza80jqadmah7v2cpfqfay57y12hcz6brvia6bmr5qagb"; depends=[MASS matrixcalc sem]; }; semPLS = derive { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; -semPlot = derive { name="semPlot"; version="1.0.1"; sha256="0sdp970qb4mz5vzncfmqxvg1z12gmiyqi3yaz9x2drm3rgzavy83"; depends=[qgraph lavaan sem plyr XML igraph lisrelToR rockchalk colorspace corpcor]; }; +semPlot = derive { name="semPlot"; version="1.0.1"; sha256="0sdp970qb4mz5vzncfmqxvg1z12gmiyqi3yaz9x2drm3rgzavy83"; depends=[colorspace corpcor igraph lavaan lisrelToR plyr qgraph rockchalk sem XML]; }; semTools = derive { name="semTools"; version="0.4-6"; sha256="1rxs6kwfc4bp273i9p25v4mc2sm91fkgsg178ifd4d3235xawcvz"; depends=[lavaan]; }; semdiag = derive { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; -semiArtificial = derive { name="semiArtificial"; version="1.2.0"; sha256="11pwdqpsf5d5g74s2b8ixmrh2khkha3d4akzlkn652s98qr55dpc"; depends=[CORElearn MASS nnet cluster mclust fpc timeSeries timeDate]; }; +semiArtificial = derive { name="semiArtificial"; version="1.2.0"; sha256="11pwdqpsf5d5g74s2b8ixmrh2khkha3d4akzlkn652s98qr55dpc"; depends=[cluster CORElearn fpc MASS mclust nnet RSNNS timeDate timeSeries]; }; semisupKernelPCA = derive { name="semisupKernelPCA"; version="0.1.5"; sha256="1v8wdq63b1gqicj8c9a24k0w7cc0bkg0mnc9z5mklsfcl7g0g6k9"; depends=[datautils irlba]; }; -semsfa = derive { name="semsfa"; version="1.0"; sha256="1x227rigjk9glq5x9lp6xxcf3y9i73rv3mrj7lkr2ycnsx8zz57h"; depends=[mgcv np moments doParallel foreach iterators]; }; +semsfa = derive { name="semsfa"; version="1.0"; sha256="1x227rigjk9glq5x9lp6xxcf3y9i73rv3mrj7lkr2ycnsx8zz57h"; depends=[doParallel foreach iterators mgcv moments np]; }; sendmailR = derive { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sendplot = derive { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; }; -sensR = derive { name="sensR"; version="1.4-5"; sha256="1vp06ghmk852wkc4vmp4k68z6v623hsay69c8nm3m8xvf2vrqfgb"; depends=[multcomp MASS numDeriv]; }; -sensitivity = derive { name="sensitivity"; version="1.11"; sha256="197gm4ylh8giyh5iv9lf5dyb9ad7m406d08ai3vnf7irj7f8nwp2"; depends=[boot]; }; +sensR = derive { name="sensR"; version="1.4-5"; sha256="1vp06ghmk852wkc4vmp4k68z6v623hsay69c8nm3m8xvf2vrqfgb"; depends=[MASS multcomp numDeriv]; }; +sensitivity = derive { name="sensitivity"; version="1.11.1"; sha256="1v4lzy687r66jmxgm0fy81wgj70ak58hd13h1jn60wb5j3p91qki"; depends=[boot]; }; sensitivityPStrat = derive { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; sensitivitymv = derive { name="sensitivitymv"; version="1.2"; sha256="0h8lbl5yhxgzdrajjydb2ap9q3dnm1abxdk8gdhp84m1bv8pznkj"; depends=[]; }; sensitivitymw = derive { name="sensitivitymw"; version="1.1"; sha256="1bknnfkkqgmchabcjdfikm37sn5k41ar8lpnjw58i8qh7yzq237i"; depends=[]; }; -sensory = derive { name="sensory"; version="1.0"; sha256="0mfjj3lsx5i8bc8ikhqwycmfryzg9vd64m6ahqjf6xva7bj5h1v6"; depends=[Matrix gtools MASS]; }; +sensory = derive { name="sensory"; version="1.0"; sha256="0mfjj3lsx5i8bc8ikhqwycmfryzg9vd64m6ahqjf6xva7bj5h1v6"; depends=[gtools MASS Matrix]; }; separationplot = derive { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; }; seqCBS = derive { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; }; seqDesign = derive { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; }; -seqMeta = derive { name="seqMeta"; version="1.5"; sha256="1igag08qkfvkx83w6jjyfmjpxil9wvag1yfnxp3pqbglj9l99pmn"; depends=[survival Matrix coxme CompQuadForm]; }; +seqMeta = derive { name="seqMeta"; version="1.5"; sha256="1igag08qkfvkx83w6jjyfmjpxil9wvag1yfnxp3pqbglj9l99pmn"; depends=[CompQuadForm coxme Matrix survival]; }; seqPERM = derive { name="seqPERM"; version="1.0"; sha256="1i8ai4gxybh08wxjh96m6xlqxhh7ch0xihjs879snmy4zqfi0pap"; depends=[]; }; seqRFLP = derive { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; seqinr = derive { name="seqinr"; version="3.1-3"; sha256="0bbjfwbqg74wsamb3iz01g0ssdpdpg65gh00y9xlnpk4wb990n4n"; depends=[ade4]; }; -seqminer = derive { name="seqminer"; version="3.4"; sha256="1fl7mmqs3y0vpfhqss7syafwli67jwha703fyailxixq7djvwf9f"; depends=[stringr]; }; +seqminer = derive { name="seqminer"; version="4.2"; sha256="026minlmqf4n6pznkzkm6daqa7pj7hmis0i2azdy2m56a9hkj52z"; depends=[stringr]; }; seqmon = derive { name="seqmon"; version="0.2"; sha256="075hc6vgl1w3nisrihf5w6mkkg9q601jsqxm9hk9yagyvvd7d78w"; depends=[]; }; -sequences = derive { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp Rcpp]; }; -sequenza = derive { name="sequenza"; version="2.1.1"; sha256="0vrdmfy8qyzjflyl5skcy9mazl56py5gzb1kn1xh2hiv3mshdrfx"; depends=[squash]; }; -seriation = derive { name="seriation"; version="1.0-14"; sha256="0a7m1x6dhk00wh6djiz75x462y06fammr7fd2z8ks32migsbbvpp"; depends=[TSP cluster gclus colorspace MASS]; }; -seroincidence = derive { name="seroincidence"; version="1.0.3"; sha256="1qk11xrv2qnw3wmcg357m9nbnc1qr3wl2nznj8xw10r3jc1736s8"; depends=[]; }; -servr = derive { name="servr"; version="0.2"; sha256="0gah99snaj8lk5zfzbxi3jwvpnlff9diz9gqv4qalfxpmb7fp6lc"; depends=[mime httpuv jsonlite]; }; -sesem = derive { name="sesem"; version="1.0.1"; sha256="0s4xkv6bc5nxhj09mk9agnj11b9h7swccs9jrn4lg3fy12vqhf5a"; depends=[lavaan mgcv gplots]; }; +sequences = derive { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; +sequenza = derive { name="sequenza"; version="2.1.1"; sha256="0vrdmfy8qyzjflyl5skcy9mazl56py5gzb1kn1xh2hiv3mshdrfx"; depends=[copynumber squash]; }; +seriation = derive { name="seriation"; version="1.1-0"; sha256="0lbkv005ws4khwp12mygrpvxxdz8g5a7q2xl62k43sz6vj7cp8cn"; depends=[cluster colorspace gclus gplots MASS registry TSP]; }; +seroincidence = derive { name="seroincidence"; version="1.0.4"; sha256="0m3hlbv3277qyhqi3liwbna7czd6kdc7gqaxc7xn5x8d2hsc45hk"; depends=[]; }; +servr = derive { name="servr"; version="0.2"; sha256="0gah99snaj8lk5zfzbxi3jwvpnlff9diz9gqv4qalfxpmb7fp6lc"; depends=[httpuv jsonlite mime]; }; +sesem = derive { name="sesem"; version="1.0.1"; sha256="0s4xkv6bc5nxhj09mk9agnj11b9h7swccs9jrn4lg3fy12vqhf5a"; depends=[gplots lavaan mgcv]; }; session = derive { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; setRNG = derive { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; sets = derive { name="sets"; version="1.0-14"; sha256="1wfg4yc3p7zqcj2z3lb5knv6l3lw4pf20s3rkpz4yj4nsb41zs4g"; depends=[]; }; -settings = derive { name="settings"; version="0.2.1"; sha256="0dxnysa3857d141rk46pyfkbgzk6ms3fhb2bz0y41jy72bdhxmrm"; depends=[]; }; +settings = derive { name="settings"; version="0.2.2"; sha256="0bssy42kkb1aww9yndkyw3bj1jn3akvwsvhj0cz16r3a7jfcav7h"; depends=[]; }; setwidth = derive { name="setwidth"; version="1.0-3"; sha256="1s6m24kmkafscgibgfldm70m57bv4gs0m7fdki18nwdi1rvwpkbf"; depends=[]; }; severity = derive { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; sfa = derive { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfsmisc = derive { name="sfsmisc"; version="1.0-27"; sha256="16hkm0ylwipc1zqsi8fiwyqvl9hpjgl7kyvgamibxlbp1y669qgm"; depends=[]; }; sft = derive { name="sft"; version="2.0-7"; sha256="1fq1b32f08i4k9bv4hh7rhk1jj7kgans6dwh1bmawaqkchyab3jr"; depends=[fda]; }; sgPLS = derive { name="sgPLS"; version="1.2"; sha256="1q3pf4sfh8l2qwxm0qd3sg29kvvprpcyis0afbcjhvfr10w91xpw"; depends=[mixOmics]; }; -sgd = derive { name="sgd"; version="0.1"; sha256="16jqzshkg1n1azyfjadyg454ar0hk2dmw9ba1wrn6rh7mxsngik6"; depends=[Rcpp MASS Rcpp RcppArmadillo BH]; }; +sgRSEA = derive { name="sgRSEA"; version="0.1"; sha256="0vyypnq81l36x0j44q2l9wbf3x4krz4fzypi7vyqhaq97mkzaw5j"; depends=[]; }; +sgd = derive { name="sgd"; version="0.1"; sha256="16jqzshkg1n1azyfjadyg454ar0hk2dmw9ba1wrn6rh7mxsngik6"; depends=[BH MASS Rcpp RcppArmadillo]; }; sgeostat = derive { name="sgeostat"; version="1.0-25"; sha256="04zl932s6zb26r42h2l8qf3d43bmrq67281mrkh4spn4vcddv5da"; depends=[]; }; -sglOptim = derive { name="sglOptim"; version="1.0.122.1"; sha256="0ld53rdxai85r9hwz9jrsxr08lxin0ksxa6823r7cr96w18c1ssm"; depends=[Matrix Rcpp RcppProgress RcppArmadillo BH]; }; -sglasso = derive { name="sglasso"; version="1.2"; sha256="1y2ms6p792klzmy3prhsyanlbp7n004di9hscma7ih3jx9703wsr"; depends=[Matrix igraph]; }; +sglOptim = derive { name="sglOptim"; version="1.0.122.1"; sha256="0ld53rdxai85r9hwz9jrsxr08lxin0ksxa6823r7cr96w18c1ssm"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress]; }; +sglasso = derive { name="sglasso"; version="1.2.1"; sha256="18dag7wvz0l959igg4g77psi8idvqyikg676yy9ga3k69kl11hdk"; depends=[igraph Matrix]; }; sglr = derive { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; sgof = derive { name="sgof"; version="2.2"; sha256="087f4nbx9ppzi5za3f4w4msq2gd3r08v16fihppa30nqydg3ssbj"; depends=[poibin]; }; sgr = derive { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive { name="sgt"; version="1.1"; sha256="0j4xxh5lypcl0hyfx7gzrhb40z36ygn97hf1nl6m8wj4dncg39jf"; depends=[maxLik]; }; shape = derive { name="shape"; version="1.4.2"; sha256="0yk3cmsa57svcvbnm21pyr0s0qbhnllka8nmsg4yb41frjlqph66"; depends=[]; }; -shapeR = derive { name="shapeR"; version="0.1-3"; sha256="12j6qawnhv7i1488wkh8shm3shzi7g58r8pk9p10lm0bwi59l2l8"; depends=[gplots jpeg pixmap wavethresh vegan MASS]; }; +shapeR = derive { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; }; shapefiles = derive { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; -shapes = derive { name="shapes"; version="1.1-10"; sha256="038xps6f8b6w9qa9csqk33ggmb311h5zxwsxr027bd95a3vmyijx"; depends=[scatterplot3d rgl MASS]; }; -sharpshootR = derive { name="sharpshootR"; version="0.7-2"; sha256="04plsgmyil6znmcqx2j78n2vjj4y4mprb3wqbhwagapdhvp9rcis"; depends=[aqp ape soilDB igraph cluster lattice latticeExtra vegan sp reshape2 Hmisc scales circular RColorBrewer plyr]; }; -sharx = derive { name="sharx"; version="1.0-4"; sha256="1flcflx6w93s8bk4lcwcscwx8vacdl8900ikwkz358jbgywskd5n"; depends=[Formula dcmle dclone]; }; -shiny = derive { name="shiny"; version="0.11.1"; sha256="1aplb2wvgsbg6hhjsyjjhd8qbj11yrzm10rr812lzpiavd9wjn3w"; depends=[httpuv mime RJSONIO xtable digest htmltools R6]; }; +shapes = derive { name="shapes"; version="1.1-10"; sha256="038xps6f8b6w9qa9csqk33ggmb311h5zxwsxr027bd95a3vmyijx"; depends=[MASS rgl scatterplot3d]; }; +sharpshootR = derive { name="sharpshootR"; version="0.7-2"; sha256="04plsgmyil6znmcqx2j78n2vjj4y4mprb3wqbhwagapdhvp9rcis"; depends=[ape aqp circular cluster Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; +sharx = derive { name="sharx"; version="1.0-4"; sha256="1flcflx6w93s8bk4lcwcscwx8vacdl8900ikwkz358jbgywskd5n"; depends=[dclone dcmle Formula]; }; +shiny = derive { name="shiny"; version="0.12.1"; sha256="041illlgpw47y88razd77xj8q2h3brf582bhh8p8mmn7rn2af0mc"; depends=[digest htmltools httpuv jsonlite mime R6 xtable]; }; shinyAce = derive { name="shinyAce"; version="0.1.0"; sha256="1031hzh647ys0d5hkw7cqxj0wgry3rxgq95fgs7slbm0rgx9g6f7"; depends=[shiny]; }; -shinyBS = derive { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[shiny htmltools]; }; -shinyFiles = derive { name="shinyFiles"; version="0.6.0"; sha256="08cvpvrsr1bh0yh17ap20bmwxa4bsan3h6bicrxzanl2dlwp8kvr"; depends=[shiny htmltools RJSONIO]; }; +shinyBS = derive { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; +shinyFiles = derive { name="shinyFiles"; version="0.6.0"; sha256="08cvpvrsr1bh0yh17ap20bmwxa4bsan3h6bicrxzanl2dlwp8kvr"; depends=[htmltools RJSONIO shiny]; }; shinyRGL = derive { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; }; shinyTree = derive { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; }; shinybootstrap2 = derive { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; -shinydashboard = derive { name="shinydashboard"; version="0.4.0"; sha256="0my1bz983ncnvljhz6d25q9bqc510q9dgl9wzcg8c0civyjaps39"; depends=[shiny htmltools]; }; -shinyjs = derive { name="shinyjs"; version="0.0.3.3"; sha256="1fgydm8ai0fvfqbwlkj27pa3nl242kb3xiai50lrda0ssqbrnw67"; depends=[shiny]; }; +shinydashboard = derive { name="shinydashboard"; version="0.5.0"; sha256="1q2g0vdid14id489ybfhf6x67bmc4g2zhamw3vx9piqvdlfmnqg5"; depends=[htmltools shiny]; }; +shinyjs = derive { name="shinyjs"; version="0.0.6.2"; sha256="0z9lw680bhfzm40j1ffy6y3vfxjkz9457w62rjrw32nssv8vjqvs"; depends=[shiny]; }; shinythemes = derive { name="shinythemes"; version="1.0.1"; sha256="0wv579cxjlnd7wkfqzy2x3qk7d1abql1nhw10rx1c4c808vsylkw"; depends=[shiny]; }; -shopifyr = derive { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[RCurl R6 RJSONIO]; }; +shopifyr = derive { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[R6 RCurl RJSONIO]; }; shotGroups = derive { name="shotGroups"; version="0.6"; sha256="0khcgzli6114yqrglmsvhr8rwkkkwdkd06b50isbc24vpv6xbfx9"; depends=[boot coin CompQuadForm energy KernSmooth mvoutlier robustbase]; }; -showtext = derive { name="showtext"; version="0.4-1"; sha256="1c2wd107g2xg8khlad5vimwj7wdxk7b7i2k1ydkkd7b47c6d9zhh"; depends=[sysfonts showtextdb]; }; +showtext = derive { name="showtext"; version="0.4-2"; sha256="18r1xwyjca9ccr2yf8r786pgji38myqp35abxsvd7wv7k3avhwd9"; depends=[showtextdb sysfonts]; }; showtextdb = derive { name="showtextdb"; version="1.0"; sha256="14iv5nyc9wszy1yhbggk7zs042kv10lwk92pn9751hfws53yq6hf"; depends=[sysfonts]; }; -shp2graph = derive { name="shp2graph"; version="0-2"; sha256="09gbb7f9h3q2p56dwb2813mr36115ah70szq47jimpymzkd2x08m"; depends=[maptools igraph]; }; -shrink = derive { name="shrink"; version="1.2.0"; sha256="0r207mj57kjn6wfmz4f2l4wmbz7g1pvj96gpl0s76vkdjzbh1l47"; depends=[survival MASS rms]; }; +shp2graph = derive { name="shp2graph"; version="0-2"; sha256="09gbb7f9h3q2p56dwb2813mr36115ah70szq47jimpymzkd2x08m"; depends=[igraph maptools]; }; +shrink = derive { name="shrink"; version="1.2.0"; sha256="0r207mj57kjn6wfmz4f2l4wmbz7g1pvj96gpl0s76vkdjzbh1l47"; depends=[MASS rms survival]; }; shuffle = derive { name="shuffle"; version="1.0"; sha256="037i45mfys1nr9sqmmsfb2yd3ba3aa22hc701f5j2zp8jx57qn3k"; depends=[]; }; -siRSM = derive { name="siRSM"; version="1.1"; sha256="0fx6bfb5c8hdlgjxddwhhzr09ls53kfgn36hjk9zi5z8m14a7wbn"; depends=[rsm MASS foreach doSNOW]; }; -siar = derive { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[hdrcde coda MASS bayesm mnormt spatstat]; }; -sideChannelAttack = derive { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[MASS corpcor mmap ade4 infotheo]; }; -sidier = derive { name="sidier"; version="3.0.1"; sha256="1vl28biy7inycn74kzq0gm3r2fd5ylkndl863jy8b3jvdrq9achk"; depends=[ape network igraph gridBase ggmap ggplot2]; }; +siRSM = derive { name="siRSM"; version="1.1"; sha256="0fx6bfb5c8hdlgjxddwhhzr09ls53kfgn36hjk9zi5z8m14a7wbn"; depends=[doSNOW foreach MASS rsm]; }; +siar = derive { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; }; +sideChannelAttack = derive { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; }; +sidier = derive { name="sidier"; version="3.0.1"; sha256="1vl28biy7inycn74kzq0gm3r2fd5ylkndl863jy8b3jvdrq9achk"; depends=[ape ggmap ggplot2 gridBase igraph network]; }; sievetest = derive { name="sievetest"; version="1.2.2"; sha256="0mbgkf014m6bc7qg60vf065i6mvl5n4a0bvg8vb7dw531vsw2771"; depends=[]; }; sig = derive { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; sigclust = derive { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; -sigloc = derive { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[nleqslv ellipse]; }; -signal = derive { name="signal"; version="0.7-4"; sha256="0sz8im7i46qy5wjpm34a2nqvrc1vipmqlw8ns3i2s1vhcvp7fjs1"; depends=[MASS]; }; +sigloc = derive { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[ellipse nleqslv]; }; +signal = derive { name="signal"; version="0.7-5"; sha256="0v6zmy25ikkrc2ravaj7k1qzxm3zdvj6g0d55lkyjv7pb3kl5m1k"; depends=[MASS]; }; signal_hsmm = derive { name="signal.hsmm"; version="1.2.1"; sha256="0nxhksvwkidmp5x27hxmwxbv747lrwa19b4vi6dx72hny8prgvpc"; depends=[biogram seqinr shiny]; }; -simFrame = derive { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[Rcpp lattice Rcpp]; }; -simMSM = derive { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[survival mvna]; }; -simPH = derive { name="simPH"; version="1.3.1"; sha256="1i4sqaiiy77a4c3aq52d0ddn3abkkqgjh5sxj2v459gck5fd9rgs"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv reshape2 stringr survival quadprog]; }; -simPop = derive { name="simPop"; version="0.2.9"; sha256="1vi2jab57aqf1jyf87vrybz5qbhv7wdjhsm963z3cpyva2bj0i60"; depends=[lattice vcd data_table laeken MASS Rcpp e1071 nnet doParallel foreach colorspace Rcpp]; }; -simSummary = derive { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind svUnit gdata]; }; +signmedian_test = derive { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; +simFrame = derive { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; +simMSM = derive { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; +simPH = derive { name="simPH"; version="1.3.2"; sha256="0zlzlan2syl51smc3wm52yiak82v1f3pjgsba3w677a37g3badls"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog reshape2 stringr survival]; }; +simPop = derive { name="simPop"; version="0.2.9"; sha256="1vi2jab57aqf1jyf87vrybz5qbhv7wdjhsm963z3cpyva2bj0i60"; depends=[colorspace data_table doParallel e1071 foreach laeken lattice MASS nnet Rcpp vcd]; }; +simSummary = derive { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind gdata svUnit]; }; simTool = derive { name="simTool"; version="1.0.3"; sha256="1x018p5mssrhz2ghs3ly9wss12503h93gl7zk0mqh1bcrzximh0k"; depends=[plyr reshape]; }; simba = derive { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; simboot = derive { name="simboot"; version="0.2-5"; sha256="0slznwk8i3z76sxbfd4y5rp28jr6jv4i5ynnckpr10i59ba04wlq"; depends=[boot mvtnorm]; }; +simcausal = derive { name="simcausal"; version="0.2.0"; sha256="1isnax63p4xdy820lyfpbjqfz9h7k6zkhpqz87knlnz2ys1dcqa4"; depends=[data_table reshape2]; }; simctest = derive { name="simctest"; version="2.4.1"; sha256="0v4l3dqhr551kr1kivsndk4ynkiaarp8hp65vgng4q8jm60il98c"; depends=[]; }; simecol = derive { name="simecol"; version="0.8-6"; sha256="0h48klfwk0836byncqn9d0z8mkh6lc8qm4zivyk5af79mr5s0bn5"; depends=[deSolve]; }; simex = derive { name="simex"; version="1.5"; sha256="01706vbmfgcg13w1kq8v5rnk5xggbd1n7fv50c6bvhdyc1dly313"; depends=[]; }; @@ -5929,39 +6066,40 @@ simpleNeural = derive { name="simpleNeural"; version="0.1.1"; sha256="0rm6kvz1mp simpleboot = derive { name="simpleboot"; version="1.1-3"; sha256="1qprjisfflhzg8ll12p3q1zcfdiyc45glic2j9cw9nhx5rb065fk"; depends=[boot]; }; simplexreg = derive { name="simplexreg"; version="1.0"; sha256="144kljh968i7n2d21r4204i4h952mfrkfc8b5r6x760msgjphxvh"; depends=[Formula plotrix]; }; simrel = derive { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; }; -simsalapar = derive { name="simsalapar"; version="1.0-5"; sha256="1z3dwylfrl08pq2k5ppfma3ijh356qc7wwdvgyp3wmw1bcq1amyf"; depends=[sfsmisc gridBase colorspace]; }; +simsalapar = derive { name="simsalapar"; version="1.0-5"; sha256="1z3dwylfrl08pq2k5ppfma3ijh356qc7wwdvgyp3wmw1bcq1amyf"; depends=[colorspace gridBase sfsmisc]; }; simsem = derive { name="simsem"; version="0.5-8"; sha256="1kir1c0g5xb4gzmpvx13qp071b3d5v0br3093q394wzp22d816xk"; depends=[lavaan]; }; siplab = derive { name="siplab"; version="1.1"; sha256="1b5drhla4p7n1y1cp7kqwqzw0b286kgij9j6wsks5vjgy5qfal1x"; depends=[spatstat]; }; -sirad = derive { name="sirad"; version="2.0-7"; sha256="009icj1jil757vvsf88sgmdz40swrx1qvrhnx7wwj7p3dlh78pvw"; depends=[zoo ncdf RNetCDF raster]; }; -sirt = derive { name="sirt"; version="1.5-0"; sha256="0mj6j336b4kzd2fsy3nha66r88cyfnq70cgfld36p9izlxlq6l7x"; depends=[TAM CDM Rcpp mirt lavaan qgraph semPlot combinat ic_infer sfsmisc sm psych pbivnorm gtools igraph coda mvtnorm MASS Matrix Rcpp RcppArmadillo]; }; +sirad = derive { name="sirad"; version="2.0-7"; sha256="009icj1jil757vvsf88sgmdz40swrx1qvrhnx7wwj7p3dlh78pvw"; depends=[ncdf raster RNetCDF zoo]; }; +sirt = derive { name="sirt"; version="1.7-0"; sha256="12z1gk92rll5lxycv3gvz6y5ia5pbysq5fr3y62xn3wwgm2vrpch"; depends=[CDM coda combinat gtools ic_infer igraph lavaan lavaan_survey MASS Matrix mirt mvtnorm pbivnorm psych qgraph Rcpp RcppArmadillo semPlot sfsmisc sm survey TAM]; }; sisVIVE = derive { name="sisVIVE"; version="1.1"; sha256="1p1l07pgd88ap3bp0zwinnzda07pfg6cn92ync2pkqn5l0gmfxbs"; depends=[lars]; }; -sisus = derive { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[MASS RColorBrewer coda gdata gtools moments polyapost rcdd]; }; +sisus = derive { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; }; sitar = derive { name="sitar"; version="1.0.2"; sha256="0z9r3z512s0gpkcpdbi45qdl40rp4jacpm9k0c5pjilwiga6p07z"; depends=[nlme quantreg]; }; sitools = derive { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sivipm = derive { name="sivipm"; version="1.0-0"; sha256="1r548kfsi90rzisx37nw3w9vwj3gs4ck5zhwlskbdzgigb78spfp"; depends=[seqinr]; }; -sjPlot = derive { name="sjPlot"; version="1.8"; sha256="10hbm76qrlbcl384vfp9gkhlkxpvic8iq3l0k97pb7pv8k4482mx"; depends=[car dplyr ggplot2 MASS psych scales sjmisc tidyr]; }; +sjPlot = derive { name="sjPlot"; version="1.8.1"; sha256="0na5c9fd4irnf1vhqhxgdhwpqyqfsqdxz47gx65r9qq294bhwc75"; depends=[car dplyr ggplot2 MASS psych scales sjmisc tidyr]; }; sjdbc = derive { name="sjdbc"; version="1.5.0-71"; sha256="0i9wdfadfcabayq78ilcn6x6y5csazbsgd60vssa2hdff0ncgvk1"; depends=[rJava]; }; -sjmisc = derive { name="sjmisc"; version="1.0.1"; sha256="1a8i355jzp77d8ngyyyiw12yx2ppc2drh3qxs2n4b361vxcq8p6m"; depends=[MASS]; }; -skatMeta = derive { name="skatMeta"; version="1.4.3"; sha256="0bknv066ya4yl4hl4y02d9lglq2wkl9c2j1shzg3d64dg4sjvbak"; depends=[Matrix coxme survival CompQuadForm]; }; +sjmisc = derive { name="sjmisc"; version="1.0.2"; sha256="1hgmm5yjgnd2n3k0gjcv58pv0wxzx5pia38ycjix4vyjgbp01kq0"; depends=[MASS]; }; +skatMeta = derive { name="skatMeta"; version="1.4.3"; sha256="0bknv066ya4yl4hl4y02d9lglq2wkl9c2j1shzg3d64dg4sjvbak"; depends=[CompQuadForm coxme Matrix survival]; }; skda = derive { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skewt = derive { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; -skmeans = derive { name="skmeans"; version="0.2-6"; sha256="02zw2y7s13hb6mx9w2yr5s2v1p5yxg3k67bhrl92g9n2jkbim3ni"; depends=[slam clue cluster]; }; +skmeans = derive { name="skmeans"; version="0.2-6"; sha256="02zw2y7s13hb6mx9w2yr5s2v1p5yxg3k67bhrl92g9n2jkbim3ni"; depends=[clue cluster slam]; }; sla = derive { name="sla"; version="0.1"; sha256="0fr5n65ppwsh9z7a6rma9ak0bl8x3nz7v25lij7wb5nrf3sl74yb"; depends=[]; }; -slackr = derive { name="slackr"; version="1.2"; sha256="1ymj3x52wyp0mp41xnnycg0vhdmv8whimwk1hzfsqr30pccnvn9j"; depends=[httr jsonlite data_table ggplot2]; }; +slackr = derive { name="slackr"; version="1.2"; sha256="1ymj3x52wyp0mp41xnnycg0vhdmv8whimwk1hzfsqr30pccnvn9j"; depends=[data_table ggplot2 httr jsonlite]; }; slam = derive { name="slam"; version="0.1-32"; sha256="000636dwj4kmj5w1w5s6bqixh78m7262y3fgizj7rfhcnc2gz7ad"; depends=[]; }; sld = derive { name="sld"; version="0.3"; sha256="18xj57v9gg78d894cr1h6wp10i05hrnmwhmq6yh6211kdyj9ljp1"; depends=[lmom]; }; -slfm = derive { name="slfm"; version="0.1"; sha256="0s5q6ank6075sls9pkqhf7jlvi6gyvsbxa99c34d6ccrv88skyzq"; depends=[Rcpp coda Rcpp RcppArmadillo]; }; +slfm = derive { name="slfm"; version="0.1"; sha256="0s5q6ank6075sls9pkqhf7jlvi6gyvsbxa99c34d6ccrv88skyzq"; depends=[coda Rcpp RcppArmadillo]; }; slp = derive { name="slp"; version="1.0-3"; sha256="09jyrp6y3rigy043d8s5i7nh89pgpvn3cv51mr729c9ccr6jdjb1"; depends=[mgcv]; }; sm = derive { name="sm"; version="2.2-5.4"; sha256="0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"; depends=[]; }; smaa = derive { name="smaa"; version="0.2-3"; sha256="1vabxxyz2k10sbvrzdf51jlh59zlkjdq82vblk5s37ddmzgwnif9"; depends=[]; }; smac = derive { name="smac"; version="1.0"; sha256="1inn7i5k0q5vln24kazh3gl3szf6lxwnjr2rw70jcyn9dr9iy952"; depends=[]; }; -smacof = derive { name="smacof"; version="1.6-2"; sha256="10yg4dxyv08wq1a74jac6jnmzhbjm6qip3vg5ca06w5pqk6lbdgn"; depends=[rgl polynom scatterplot3d Hmisc colorspace nnls]; }; +smacof = derive { name="smacof"; version="1.6-2"; sha256="10yg4dxyv08wq1a74jac6jnmzhbjm6qip3vg5ca06w5pqk6lbdgn"; depends=[colorspace Hmisc nnls polynom rgl scatterplot3d]; }; smacpod = derive { name="smacpod"; version="1.1.1"; sha256="1pmgxvww24mcgrvv87axqvw457r5wl57scqy93inmzia2mgyva1p"; depends=[spatstat]; }; smam = derive { name="smam"; version="0.2-2"; sha256="1p6bzk4b9kpmfs4nxmcgc46hgdpldqg0pzpc0zhvs187z2nrfw75"; depends=[Matrix]; }; -smart = derive { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwahnxyv1p21j8x6cxr9spah2wzz8lb"; depends=[Matrix gplots gtools PMA elasticnet pcaPP igraph]; }; +smart = derive { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwahnxyv1p21j8x6cxr9spah2wzz8lb"; depends=[elasticnet gplots gtools igraph Matrix pcaPP PMA]; }; smatr = derive { name="smatr"; version="3.4-3"; sha256="0iiazln4albj7k5w67slvyn98cqg4f6k409mml0n1pvlkki0h7gy"; depends=[plyr]; }; -smbinning = derive { name="smbinning"; version="0.1"; sha256="1r3l8z875k5sjnbjg0dpkv3x122hn8g601025lfdpl2ndkbz4qms"; depends=[sqldf partykit Formula gsubfn]; }; +smbinning = derive { name="smbinning"; version="0.2"; sha256="1zps1gdn5s7ynbkxmxp5s3xvzixdkcrfyvz5qrv77s4825lkj57x"; depends=[Formula gsubfn partykit sqldf]; }; smcUtils = derive { name="smcUtils"; version="0.2.2"; sha256="0d1kmg386j0zrpp8vgxjwvpf1i25l86xrh82767xkp0n9qj8srwq"; depends=[]; }; +smcfcs = derive { name="smcfcs"; version="1.0.0"; sha256="04r8a2p8549pq8yl92ajj893w1rj03s14q6dv14vp0873zrxkxza"; depends=[MASS survival VGAM]; }; smco = derive { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; }; smcure = derive { name="smcure"; version="2.0"; sha256="1j7fxnb0sx57a0l929c3haz4f1y829ymlq0cvdh0cia4qp6ydv60"; depends=[survival]; }; smdata = derive { name="smdata"; version="1.1"; sha256="1hcr093xfkp88fn75imjkmfnp9cfsng5ndxpa8m2g0l29qhpxfvk"; depends=[]; }; @@ -5969,43 +6107,45 @@ smdc = derive { name="smdc"; version="0.0.2"; sha256="1j6xnzjbmmakbmk3lyjck3bsy8 smds = derive { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; }; sme = derive { name="sme"; version="0.8"; sha256="1djrs3z699p6q2y1hfywh27csqc9cp1cfm3lxkigmmvxqjhyshz6"; depends=[lattice]; }; smfsb = derive { name="smfsb"; version="1.1"; sha256="0khd23b6k9zgxz2x6g6c6k2g32mbpli32izdq6fgk1a990kdsp6j"; depends=[]; }; +smint = derive { name="smint"; version="0.4.0"; sha256="1qbmz67c9v45x9sqqd879gs1k0pq531bgfzg8cbll5nmc9nvig45"; depends=[lattice Matrix]; }; smirnov = derive { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; -smnet = derive { name="smnet"; version="1.0"; sha256="185ihq44fp00qp03lp9hz821a1ddm1bd09k3j0ii715grc91nc49"; depends=[SSN spam dfoptim RSQLite igraph DBI]; }; +smnet = derive { name="smnet"; version="2.0"; sha256="0jd574cjkylcrlnlnw859f4vwadi1v955m2lb5z3w3gdpv0lbx3p"; depends=[DBI igraph RSQLite spam SSN]; }; +smoof = derive { name="smoof"; version="1.0"; sha256="10yvx5lr73kzjk7xn4jy97yzvv8qilrp7ilvk0fg5hyimbwlz13s"; depends=[BBmisc checkmate emoa ggplot2 ParamHelpers plot3D RColorBrewer]; }; smoothHR = derive { name="smoothHR"; version="1.0.1"; sha256="02kjqkgnhjwhq1vmva9nmy36a7bc6zjj6g81dw9m4zd3y9nbb005"; depends=[survival]; }; -smoothSurv = derive { name="smoothSurv"; version="1.5"; sha256="145j415jr482s860c685sr815bwx7g63pkfhra1m6r2wawqb2gl5"; depends=[survival]; }; +smoothSurv = derive { name="smoothSurv"; version="1.5-2"; sha256="07yr97nzp4mfj37v9sr37dgriq0a7kbmsj0n3lmxrzfjhinwnhij"; depends=[survival]; }; smoother = derive { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothie = derive { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; }; smoothmest = derive { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; smoothtail = derive { name="smoothtail"; version="2.0.3"; sha256="0yr3j5mq1h9pd72kyi9z6wzly9cqkscim814yi710y79l03gp0fd"; depends=[logcondens]; }; sms = derive { name="sms"; version="2.3"; sha256="0grxyp590hj2rvw1fw3yidzkl8nqqp5a14bp9xfpdph2nyas61qq"; depends=[doParallel foreach]; }; smss = derive { name="smss"; version="1.0-1"; sha256="17a0x92hxzn212yiz87n7ssyi3bdhnyawxk1kkmk46q1ss22a1pm"; depends=[]; }; -sn = derive { name="sn"; version="1.2-1"; sha256="0sqmabksvv13adf521mbzbi76dgbxc37xppjw4vwzmp4x6d8h0jf"; depends=[mnormt numDeriv]; }; +sn = derive { name="sn"; version="1.2-2"; sha256="1fsl2qjgk7lcjxszdfs7s159qwy6gyg7bsxpfg0l5rcf2mlbwf8m"; depends=[mnormt numDeriv]; }; sna = derive { name="sna"; version="2.3-2"; sha256="1dmdv1bi22gg4qdrjkdzdc51qsbb2bg4hn47b50lxnrywdj1b5jy"; depends=[]; }; snapshot = derive { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh98qpyw1i5sgi1jlafcbcldbqhsdzfz4q10"; depends=[]; }; -snht = derive { name="snht"; version="1.0.2"; sha256="1rs9q8fmvz3x21ymbmgmgkqr7hqf3ya3xb33zj31px799jlldpb9"; depends=[ggplot2 gridExtra mgcv zoo plyr reshape]; }; -snipEM = derive { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[Rcpp mvtnorm MASS GSE Rcpp RcppArmadillo]; }; +snht = derive { name="snht"; version="1.0.2"; sha256="1rs9q8fmvz3x21ymbmgmgkqr7hqf3ya3xb33zj31px799jlldpb9"; depends=[ggplot2 gridExtra mgcv plyr reshape zoo]; }; +snipEM = derive { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[GSE MASS mvtnorm Rcpp RcppArmadillo]; }; snow = derive { name="snow"; version="0.3-13"; sha256="1habq43ncac9609xky3nqfkbq52cz36dg8jbdihag269z1kazdnf"; depends=[]; }; snowFT = derive { name="snowFT"; version="1.3-0"; sha256="10hhhzzzyz1ph7c8k08s79h4pdwq4jk8bh47y37ww0yjq0fd6gik"; depends=[snow]; }; snowfall = derive { name="snowfall"; version="1.84-6"; sha256="1n9v9m4c02pspgkxfmq7zdk41s2vjcsk06b0kz9km4xy1x7k0hsg"; depends=[snow]; }; snp_plotter = derive { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; }; -snpEnrichment = derive { name="snpEnrichment"; version="1.6.3"; sha256="0hg1cgyr4nlrqfv60aky8ljwh46ldslca3jmb6v6criyz6knqdv3"; depends=[]; }; +snpEnrichment = derive { name="snpEnrichment"; version="1.6.3"; sha256="0hg1cgyr4nlrqfv60aky8ljwh46ldslca3jmb6v6criyz6knqdv3"; depends=[snpStats]; }; snpRF = derive { name="snpRF"; version="0.4"; sha256="1amxc4jprrc6n5w5h9jm2as025gqdqkla2asz7x97sjdnnj9kzzn"; depends=[]; }; -snpStatsWriter = derive { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace]; }; +snpStatsWriter = derive { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace snpStats]; }; snpar = derive { name="snpar"; version="1.0"; sha256="0c9myg748jm7khqs8yhg2glxgar1wcf6gyg0xwbmw0qc41myzfnq"; depends=[]; }; -snplist = derive { name="snplist"; version="0.13"; sha256="1v9n3gdvygx4s6hlm0ijyw04szxwn9c1dqnhaqn61a8yfkmmnxn8"; depends=[RSQLite Rcpp R_utils DBI Rcpp]; }; -sns = derive { name="sns"; version="1.0.0"; sha256="0qr5gj095xg48mqj7maz1m1zizx1jdjca8qygygqvak1b7nl4ccs"; depends=[mvtnorm coda]; }; -soc_ca = derive { name="soc.ca"; version="0.7.1"; sha256="0lg1bpbd0crywa29xc79cn3kr614wq4hr09xpwk17nv7q8qw8cnh"; depends=[ggplot2 gridExtra ellipse scales]; }; +snplist = derive { name="snplist"; version="0.13"; sha256="1v9n3gdvygx4s6hlm0ijyw04szxwn9c1dqnhaqn61a8yfkmmnxn8"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; +sns = derive { name="sns"; version="1.0.0"; sha256="0qr5gj095xg48mqj7maz1m1zizx1jdjca8qygygqvak1b7nl4ccs"; depends=[coda mvtnorm]; }; +soc_ca = derive { name="soc.ca"; version="0.7.1"; sha256="0lg1bpbd0crywa29xc79cn3kr614wq4hr09xpwk17nv7q8qw8cnh"; depends=[ellipse ggplot2 gridExtra scales]; }; softImpute = derive { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; softclassval = derive { name="softclassval"; version="1.0-20150416"; sha256="1zrf0nmyy4pfs4dzardghzznw1ahl21w4nykfh2pp8il4dpi21fs"; depends=[arrayhelpers svUnit]; }; -soil_spec = derive { name="soil.spec"; version="2.1.4"; sha256="129iqr6fdvlchq56jmy34s6qc2j5fcfir6pa5as5prw0djyvbdv0"; depends=[pls KernSmooth wavelets hexView sp GSIF]; }; -soilDB = derive { name="soilDB"; version="1.5-4"; sha256="1n8ybryrg88m12qb6bwiqs04dxgbs4nv8ay27d2vi0xrkqhs99k2"; depends=[aqp plyr Hmisc RCurl XML sp]; }; -soilphysics = derive { name="soilphysics"; version="2.3"; sha256="1d64jaw5ra1l0za2kpigqfdf52a5zrxy9j9g2g7f5yffqsp0jwb5"; depends=[rpanel MASS]; }; +soil_spec = derive { name="soil.spec"; version="2.1.4"; sha256="129iqr6fdvlchq56jmy34s6qc2j5fcfir6pa5as5prw0djyvbdv0"; depends=[GSIF hexView KernSmooth pls sp wavelets]; }; +soilDB = derive { name="soilDB"; version="1.5-4"; sha256="1n8ybryrg88m12qb6bwiqs04dxgbs4nv8ay27d2vi0xrkqhs99k2"; depends=[aqp Hmisc plyr RCurl sp XML]; }; +soilphysics = derive { name="soilphysics"; version="2.3"; sha256="1d64jaw5ra1l0za2kpigqfdf52a5zrxy9j9g2g7f5yffqsp0jwb5"; depends=[MASS rpanel]; }; soilprofile = derive { name="soilprofile"; version="1.0"; sha256="0sdfg6m2m6rb11hj017jx2lzcgk6llb01994x749s0qhzxmvx9mb"; depends=[aqp lattice munsell splancs]; }; -soiltexture = derive { name="soiltexture"; version="1.2.19"; sha256="0nw72913qb1hpifjqv0s1z5sxhgavhbalqhjczxg8b66fwqzrs7l"; depends=[sp MASS]; }; +soiltexture = derive { name="soiltexture"; version="1.3.3"; sha256="1a0j10f6mxwrslqd4fvc1nqvsh47ly1nyhc6l0qq1iz6ffqd37mx"; depends=[MASS sp]; }; soilwater = derive { name="soilwater"; version="1.0.1"; sha256="08rz1i5dsgwfvfd4sl5x9j970v82v3kny0rqg1zbdnr53vp2xc7j"; depends=[]; }; -solaR = derive { name="solaR"; version="0.41"; sha256="003f8dka0jqlfshzc3d4z9frq5jb5nq6sw3sm44x7rj79w3ynpyg"; depends=[zoo lattice latticeExtra RColorBrewer]; }; -solarius = derive { name="solarius"; version="0.2.3"; sha256="164va71v77b0lyhccgrb47idhi7dlgyyw1vbs2iqci77ld6x50yl"; depends=[plyr ggplot2 data_table]; }; -solr = derive { name="solr"; version="0.1.4"; sha256="0b1f6mf8fi2ql8j06b0mkk7nyy5wj1zsg46lfxi6bp8n4ywbym9n"; depends=[plyr httr XML assertthat rjson]; }; +solaR = derive { name="solaR"; version="0.41"; sha256="003f8dka0jqlfshzc3d4z9frq5jb5nq6sw3sm44x7rj79w3ynpyg"; depends=[lattice latticeExtra RColorBrewer zoo]; }; +solarius = derive { name="solarius"; version="0.2.3"; sha256="164va71v77b0lyhccgrb47idhi7dlgyyw1vbs2iqci77ld6x50yl"; depends=[data_table ggplot2 plyr]; }; +solr = derive { name="solr"; version="0.1.4"; sha256="0b1f6mf8fi2ql8j06b0mkk7nyy5wj1zsg46lfxi6bp8n4ywbym9n"; depends=[assertthat httr plyr rjson XML]; }; som = derive { name="som"; version="0.3-5"; sha256="01xsysmqj0zhzifqpwcrs0mflh56ndv4q3nm5n5imx7wmzx2lrzp"; depends=[]; }; soma = derive { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; someKfwer = derive { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; @@ -6014,152 +6154,159 @@ somebm = derive { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4c somplot = derive { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonicLength = derive { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; }; soobench = derive { name="soobench"; version="1.0-73"; sha256="1y2r061pd4kr0kdgp8db3qy2aj07jdiyvy2py4fmwg6b8pcf9y0l"; depends=[]; }; -sortinghat = derive { name="sortinghat"; version="0.1"; sha256="1wrxwhdp3gj1ra0rgldnmc0w019bnjb6z9j20c5p1ab09x4dmlny"; depends=[MASS bdsmatrix mvtnorm]; }; -sorvi = derive { name="sorvi"; version="0.7.20"; sha256="1cd0lg74lfdbkp314i40asc3vshs1acb20wz1cxzg62vyz6ia055"; depends=[reshape ggplot2 plyr RColorBrewer XML]; }; +sortinghat = derive { name="sortinghat"; version="0.1"; sha256="1wrxwhdp3gj1ra0rgldnmc0w019bnjb6z9j20c5p1ab09x4dmlny"; depends=[bdsmatrix MASS mvtnorm]; }; +sorvi = derive { name="sorvi"; version="0.7.20"; sha256="1cd0lg74lfdbkp314i40asc3vshs1acb20wz1cxzg62vyz6ia055"; depends=[ggplot2 plyr RColorBrewer reshape XML]; }; sos = derive { name="sos"; version="1.3-8"; sha256="0vcgq8hpgdnlmkxc7qh1jqigr0gvm9x3w4ijbhma7x4i5fx3c2il"; depends=[brew]; }; -sos4R = derive { name="sos4R"; version="0.2-11"; sha256="0r4lficx8wr0bsd510z4cp6la32xf928rsiznbywpxghnypsrcgg"; depends=[XML RCurl sp]; }; +sos4R = derive { name="sos4R"; version="0.2-11"; sha256="0r4lficx8wr0bsd510z4cp6la32xf928rsiznbywpxghnypsrcgg"; depends=[RCurl sp XML]; }; sotkanet = derive { name="sotkanet"; version="0.9.10"; sha256="0nshd6caxxayr7w39d6ildz42aarr3ff8iyfpwjd544yhblkj7jh"; depends=[ggplot2 RCurl rjson]; }; -soundecology = derive { name="soundecology"; version="1.3"; sha256="1kcmsas359xcwqd0lxffr5p996jikqdag6idibq57qb6rnz3hgfz"; depends=[pracma oce ineq vegan tuneR seewave]; }; +soundecology = derive { name="soundecology"; version="1.3"; sha256="1kcmsas359xcwqd0lxffr5p996jikqdag6idibq57qb6rnz3hgfz"; depends=[ineq oce pracma seewave tuneR vegan]; }; source_gist = derive { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; -sp = derive { name="sp"; version="1.1-0"; sha256="1lnc1vlxw15wk69hh7c26dc7vxydyxwi8rfpwrpn9wj4pm0hp8a5"; depends=[lattice]; }; +sp = derive { name="sp"; version="1.1-1"; sha256="1485jylvwbf99snbmp0xs13h5wlvfgwf04cbny4zgn43nipsvsik"; depends=[lattice]; }; sp23design = derive { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; -spBayes = derive { name="spBayes"; version="0.3-9"; sha256="1zdyz5jqbixwj59q9f1x8f3knz0jwdfl0abj0w6cxrllkb38yg10"; depends=[coda magic abind Formula]; }; -spBayesSurv = derive { name="spBayesSurv"; version="1.0.2"; sha256="0pxndjksrd22p60pvc4czxwqhrpx5ik0yr23nz7kmg6wnp36hc6w"; depends=[Rcpp survival coda Rcpp RcppArmadillo]; }; +spBayes = derive { name="spBayes"; version="0.3-9"; sha256="1zdyz5jqbixwj59q9f1x8f3knz0jwdfl0abj0w6cxrllkb38yg10"; depends=[abind coda Formula magic]; }; +spBayesSurv = derive { name="spBayesSurv"; version="1.0.2"; sha256="0pxndjksrd22p60pvc4czxwqhrpx5ik0yr23nz7kmg6wnp36hc6w"; depends=[coda Rcpp RcppArmadillo survival]; }; spMC = derive { name="spMC"; version="0.3.6"; sha256="0h71m55jmv80kx5ccsrpsakrh4qw5f3kx2qizwi10jlybwggqv0m"; depends=[]; }; +spTDyn = derive { name="spTDyn"; version="1.0"; sha256="0yrnbf9g1n1hrrra2vp6412wfky1bhy3b6raif9k82xvi9p9m6pz"; depends=[coda sp]; }; spTest = derive { name="spTest"; version="0.1.0"; sha256="0asfgf0dx72025q41ndzgwm2n471lwha7bcc1dfk3zwib75w3lgl"; depends=[]; }; -spThin = derive { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[spam fields knitr]; }; +spThin = derive { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[fields knitr spam]; }; spTimer = derive { name="spTimer"; version="2.0-0"; sha256="0ldby68p4y5cz5dj2m33jcbgd3mw9nv0py4llg8aj10bxylarmfv"; depends=[coda sp]; }; spa = derive { name="spa"; version="2.0"; sha256="1np50qiiy3481xs8w0xfmyfl3aypikl1i1w8aa5n2qr16ksxrnq3"; depends=[cluster MASS]; }; -spaMM = derive { name="spaMM"; version="1.5.1"; sha256="1sv5ndg7jmyivwkj7y7i4da862qb8p3z7m83vmbphwbykpl7jfs5"; depends=[Matrix MASS lpSolveAPI proxy geometry Rcpp nlme Rcpp RcppEigen]; }; +spaMM = derive { name="spaMM"; version="1.5.1"; sha256="1sv5ndg7jmyivwkj7y7i4da862qb8p3z7m83vmbphwbykpl7jfs5"; depends=[geometry lpSolveAPI MASS Matrix nlme proxy Rcpp RcppEigen]; }; spaa = derive { name="spaa"; version="0.2.1"; sha256="0qlfbfvv97avbnixm5dz9il3dmd40wnpvv33jh7fa0mh740bircy"; depends=[]; }; space = derive { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; }; -spaceExt = derive { name="spaceExt"; version="1.0"; sha256="0lp8qmb7vcgxqqpsi89zjy7kxpibg3x2mq205pjmsrbbh7saqzr4"; depends=[limSolve glasso]; }; +spaceExt = derive { name="spaceExt"; version="1.0"; sha256="0lp8qmb7vcgxqqpsi89zjy7kxpibg3x2mq205pjmsrbbh7saqzr4"; depends=[glasso limSolve]; }; spacejam = derive { name="spacejam"; version="1.1"; sha256="1mdxmfa1aifh3h279cklm4inin0cx3h0z2lm738bai34j6hpvar7"; depends=[igraph Matrix]; }; -spacetime = derive { name="spacetime"; version="1.1-4"; sha256="1amxdjjqxibllwnb70chqmfnn66n95yf0wjmbrkjnzjszhbb25q2"; depends=[sp zoo xts intervals lattice]; }; -spacodiR = derive { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[picante colorspace Rcpp Rcpp]; }; -spacom = derive { name="spacom"; version="1.0-4"; sha256="1jfsbgy7b0mwl4n2pgrkkghx9p8b0wipvg4c5jar6v8ydby6qg94"; depends=[spdep foreach iterators lme4 nlme Matrix]; }; +spacetime = derive { name="spacetime"; version="1.1-4"; sha256="1amxdjjqxibllwnb70chqmfnn66n95yf0wjmbrkjnzjszhbb25q2"; depends=[intervals lattice sp xts zoo]; }; +spacodiR = derive { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[colorspace picante Rcpp]; }; +spacom = derive { name="spacom"; version="1.0-4"; sha256="1jfsbgy7b0mwl4n2pgrkkghx9p8b0wipvg4c5jar6v8ydby6qg94"; depends=[foreach iterators lme4 Matrix nlme spdep]; }; spam = derive { name="spam"; version="1.0-1"; sha256="033s5ka05kg97fmc3l1li3z6x5225rwhrdxh57wwn4axrjwy1nyy"; depends=[]; }; +spanel = derive { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanr = derive { name="spanr"; version="1.0"; sha256="1x29hky347kvmk9q75884vf6msgcmfi3w4lyarq99aasi442n1ps"; depends=[plyr stringr survival]; }; sparc = derive { name="sparc"; version="0.9.0"; sha256="0jsirrkmvrfxav9sphk8a4n52fg0d1vnk3i8m804i4xl0s7lrg8s"; depends=[]; }; sparcl = derive { name="sparcl"; version="1.0.3"; sha256="1348pi8akx1k6b7cf4bhpm4jqr5v8l5k086c7s6rbi5p6qlpsrvz"; depends=[]; }; -spareserver = derive { name="spareserver"; version="1.0.0"; sha256="0vaql5v3337xh1ifjziav3v7fkjff4zhrz557mgy75ham554gs7c"; depends=[assertthat pingr httr]; }; +spareserver = derive { name="spareserver"; version="1.0.0"; sha256="0vaql5v3337xh1ifjziav3v7fkjff4zhrz557mgy75ham554gs7c"; depends=[assertthat httr pingr]; }; spark = derive { name="spark"; version="1.0.0"; sha256="0ryc7kq3hx8nd5m999p1y7lxli6x862y6hqpv8xwpqak0y863p6m"; depends=[magrittr]; }; -sparkTable = derive { name="sparkTable"; version="1.0.0"; sha256="1d5vv7whayblq5g4pjrngkqf3d1pi4f0gibnskllv7rdad10n4nd"; depends=[Cairo gridExtra ggplot2 shiny Rglpk xtable StatMatch boot pixmap RGraphics]; }; +sparkTable = derive { name="sparkTable"; version="1.0.0"; sha256="1d5vv7whayblq5g4pjrngkqf3d1pi4f0gibnskllv7rdad10n4nd"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; }; sparktex = derive { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; -sparr = derive { name="sparr"; version="0.3-6"; sha256="1imgph2bf575rm06l4vsz0nhizkrwa3p5j6b6gdn30l0hlhxjp0j"; depends=[spatstat rgl MASS]; }; -sparseBC = derive { name="sparseBC"; version="1.1"; sha256="1w60n2875n809lbrn0hd4kdmsyfd64aikgzxchza8b59x77l0psy"; depends=[glasso fields]; }; -sparseHessianFD = derive { name="sparseHessianFD"; version="0.2.0"; sha256="1sj9d2d8bfjd00jr682gj21d4y0hjm91l3hj7356fpq461nb9pl8"; depends=[Rcpp Matrix Rcpp RcppEigen]; }; -sparseLDA = derive { name="sparseLDA"; version="0.1-6"; sha256="0k9v2pjx4q4nhvpjhv496v4gfr5h19w0h2h7za7j6zqfn6aygvz6"; depends=[lars elasticnet MASS mda]; }; -sparseLTSEigen = derive { name="sparseLTSEigen"; version="0.2.0"; sha256="11llmrkq0pnrdphgjvhmg269bq3xbbn4s7kd7xhvk62sigvspkcj"; depends=[robustHD Rcpp RcppEigen Rcpp RcppEigen]; }; +sparr = derive { name="sparr"; version="0.3-6"; sha256="1imgph2bf575rm06l4vsz0nhizkrwa3p5j6b6gdn30l0hlhxjp0j"; depends=[MASS rgl spatstat]; }; +sparseBC = derive { name="sparseBC"; version="1.1"; sha256="1w60n2875n809lbrn0hd4kdmsyfd64aikgzxchza8b59x77l0psy"; depends=[fields glasso]; }; +sparseHessianFD = derive { name="sparseHessianFD"; version="0.2.0"; sha256="1sj9d2d8bfjd00jr682gj21d4y0hjm91l3hj7356fpq461nb9pl8"; depends=[Matrix Rcpp RcppEigen]; }; +sparseLDA = derive { name="sparseLDA"; version="0.1-6"; sha256="0k9v2pjx4q4nhvpjhv496v4gfr5h19w0h2h7za7j6zqfn6aygvz6"; depends=[elasticnet lars MASS mda]; }; +sparseLTSEigen = derive { name="sparseLTSEigen"; version="0.2.0"; sha256="11llmrkq0pnrdphgjvhmg269bq3xbbn4s7kd7xhvk62sigvspkcj"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive { name="sparseMVN"; version="0.2.0"; sha256="12g387bvpy4249kwq946v006ab095zsmgfsrkc1yqncxhmjwrgqn"; depends=[Matrix]; }; sparseSEM = derive { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; -sparsediscrim = derive { name="sparsediscrim"; version="0.2"; sha256="0m8ccmqpg1np738njavf736qh917hd3blywyzc3vwa1xl59wqccl"; depends=[corpcor bdsmatrix mvtnorm]; }; +sparsediscrim = derive { name="sparsediscrim"; version="0.2"; sha256="0m8ccmqpg1np738njavf736qh917hd3blywyzc3vwa1xl59wqccl"; depends=[bdsmatrix corpcor mvtnorm]; }; sparsenet = derive { name="sparsenet"; version="1.2"; sha256="106a2q4syrcnmicrx92gnbsf2i5ml7pidwghrpl6926glj59j248"; depends=[glmnet shape]; }; spartan = derive { name="spartan"; version="2.2.1"; sha256="1syrvx3gmgsi3f49j27zg59b3i29v20352qbsc5mrqnwh5lawi1y"; depends=[]; }; spatcounts = derive { name="spatcounts"; version="1.1"; sha256="0rp8054aiwc62r1m3l4v5dh3cavbs5h2yb01453bw9rwis1pj2qm"; depends=[]; }; spate = derive { name="spate"; version="1.4"; sha256="1cr63qm3hgz6viw6ynzjv7q5ckfsan7zhbp224gz4cgx5yjg0pn3"; depends=[mvtnorm truncnorm]; }; spatgraphs = derive { name="spatgraphs"; version="2.62"; sha256="1h7sv6qc5zhaiaqlrzagrlc2mxlasdzilmi5q9nrd1vsdzsqxvb4"; depends=[]; }; spatial = derive { name="spatial"; version="7.3-9"; sha256="12qhfqmznij1jddjklhlqzywcfw2hww8sff7b2m6mjxlky08p5jg"; depends=[]; }; -spatial_gev_bma = derive { name="spatial.gev.bma"; version="1.0"; sha256="1rjn0gsbgiv69brhnm0zj25ya3nyfh4yf6jizng85mvss3viv3hj"; depends=[SpatialExtremes msm coda]; }; -spatial_tools = derive { name="spatial.tools"; version="1.4.8"; sha256="0qnsjfx974na87p3n7sp711sc13v6dmpvb2kjpvscixs8rsy03y1"; depends=[iterators foreach rgdal raster mmap abind doParallel]; }; +spatial_gev_bma = derive { name="spatial.gev.bma"; version="1.0"; sha256="1rjn0gsbgiv69brhnm0zj25ya3nyfh4yf6jizng85mvss3viv3hj"; depends=[coda msm SpatialExtremes]; }; +spatial_tools = derive { name="spatial.tools"; version="1.4.8"; sha256="0qnsjfx974na87p3n7sp711sc13v6dmpvb2kjpvscixs8rsy03y1"; depends=[abind doParallel foreach iterators mmap raster rgdal]; }; spatialCovariance = derive { name="spatialCovariance"; version="0.6-8"; sha256="06z6jz9sadqc382w07ysnnlhqc96hxaasz9wncbhipd4cd1y4daa"; depends=[]; }; -spatialEco = derive { name="spatialEco"; version="0.1-1"; sha256="1k7xdgg541mwr9rk3h8pi7hgb61wza14azvmbxqd92m29p2yqn00"; depends=[RANN rms sp raster spatstat cluster spdep SDMTools RCurl rgeos]; }; +spatialEco = derive { name="spatialEco"; version="0.1-1"; sha256="1k7xdgg541mwr9rk3h8pi7hgb61wza14azvmbxqd92m29p2yqn00"; depends=[cluster RANN raster RCurl rgeos rms SDMTools sp spatstat spdep]; }; spatialTailDep = derive { name="spatialTailDep"; version="1.0.2"; sha256="107yldc43pgbadxdisnc7vq8vyvcps1b1isyvxd0kyf59xldiq47"; depends=[cubature mvtnorm SpatialExtremes]; }; spatialkernel = derive { name="spatialkernel"; version="0.4-19"; sha256="0gbl6lrbaxzv2f975k0vd6ghrljgf1kjazld3hm7781kv1f87lji"; depends=[]; }; -spatialnbda = derive { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[SocialNetworks mvtnorm]; }; -spatialprobit = derive { name="spatialprobit"; version="0.9-10"; sha256="1z88nss69pixazqk3b6rpyc7mjryfznrgw9swfyfxky0bsdfj6mv"; depends=[Matrix spdep mvtnorm tmvtnorm]; }; +spatialnbda = derive { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; +spatialprobit = derive { name="spatialprobit"; version="0.9-10"; sha256="1z88nss69pixazqk3b6rpyc7mjryfznrgw9swfyfxky0bsdfj6mv"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; spatialsegregation = derive { name="spatialsegregation"; version="2.40"; sha256="0kpna2198nrj93bjsdgvj85wnjfj18psdq919fjnnhbzgzdkxs7l"; depends=[spatstat]; }; -spatstat = derive { name="spatstat"; version="1.41-1"; sha256="1r2538h4arvlsn49ci84ch45wy5k9kiq4d22bd98jrh6xna3rd6x"; depends=[mgcv Matrix deldir abind tensor polyclip goftest]; }; -spatsurv = derive { name="spatsurv"; version="0.9-8"; sha256="1dsqkcmhka8yzl13jfn19ywq1bk7788amj4nrl1bz05q3vz3drpp"; depends=[survival sp iterators RandomFields fields rgl Matrix stringr]; }; -spc = derive { name="spc"; version="0.5.0"; sha256="0bh4a3dpavczckhpwqax1h5w73ai3mkf0nwq9nhlvkdrh6k6j6cy"; depends=[]; }; +spatstat = derive { name="spatstat"; version="1.42-1"; sha256="10889xg5l7vjmlv79dhdayifplzxhnykhhgjpsn54rncz0k0hd0p"; depends=[abind deldir goftest Matrix mgcv polyclip tensor]; }; +spatsurv = derive { name="spatsurv"; version="0.9-9"; sha256="1zvf8n4isaxi8n47qvgw6zqrgsnf3g6jpm19k6w6zbp9v5r8fw7r"; depends=[fields geostatsp iterators Matrix RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; +spc = derive { name="spc"; version="0.5.1"; sha256="1299lhk8snrhm7xpq0ccmq5kmpapc13rxcyvljs4c7frj645rwz4"; depends=[]; }; spca = derive { name="spca"; version="0.6.0"; sha256="156bz3w3999vhjpsa9cs21rf2r9hv49vw1pfak0r37kbvf2d4rm6"; depends=[MASS]; }; spcadjust = derive { name="spcadjust"; version="0.1-3"; sha256="1l6m4aisk780znpjr7lnlh0z42rbc2jyblv17hafbr1siymrasc2"; depends=[]; }; -spcosa = derive { name="spcosa"; version="0.3-5"; sha256="15q0f2sfhm1b13zs5a50yfvqhgcn4fyncf0h5ivin2k9g5xvq4k4"; depends=[rJava ggplot2 sp]; }; +spcosa = derive { name="spcosa"; version="0.3-5"; sha256="15q0f2sfhm1b13zs5a50yfvqhgcn4fyncf0h5ivin2k9g5xvq4k4"; depends=[ggplot2 rJava sp]; }; spcov = derive { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive { name="spcr"; version="1.2.1"; sha256="0cm59cfw3c24i1br08fdzsz426ldljxb41pdrmbmma4a69jkv1sb"; depends=[]; }; spd = derive { name="spd"; version="2.0-0"; sha256="0aznzj68gynhx295gdb4sb7xxjiya4vbdg3gshfs0mwg1qzrhxy9"; depends=[KernSmooth]; }; -spdep = derive { name="spdep"; version="0.5-88"; sha256="1m2bxbf472xq7wr76znjirslx3hb1ylk6lp7x5003ka3i2zpakxn"; depends=[sp Matrix LearnBayes deldir boot coda nlme MASS]; }; -spdynmod = derive { name="spdynmod"; version="1.0"; sha256="05gaaln14lrrds43l2f9hw43c86gswyzymz97hc3mci1cgiwfwbz"; depends=[deSolve raster animation]; }; +spdep = derive { name="spdep"; version="0.5-88"; sha256="1m2bxbf472xq7wr76znjirslx3hb1ylk6lp7x5003ka3i2zpakxn"; depends=[boot coda deldir LearnBayes MASS Matrix nlme sp]; }; +spdynmod = derive { name="spdynmod"; version="1.0"; sha256="05gaaln14lrrds43l2f9hw43c86gswyzymz97hc3mci1cgiwfwbz"; depends=[animation deSolve raster]; }; spe = derive { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; -speaq = derive { name="speaq"; version="1.2.1"; sha256="0glvw1jdyc8w8b8m7l74d0rl74xfs4zmanmx4i41l7ynswhmqm01"; depends=[]; }; +speaq = derive { name="speaq"; version="1.2.1"; sha256="0glvw1jdyc8w8b8m7l74d0rl74xfs4zmanmx4i41l7ynswhmqm01"; depends=[MassSpecWavelet]; }; speccalt = derive { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; specificity = derive { name="specificity"; version="0.1.1"; sha256="1gvlyx9crkzm3yyp1ln5j9czcg83k7grm6ijabhl919gjjr1p60n"; depends=[car]; }; +spectral_methods = derive { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; }; spectralGP = derive { name="spectralGP"; version="1.3.2"; sha256="0gzkwi3npb97y06gvsidaq75h8lg1cvkq8mr9hxp9n7ib6n924v9"; depends=[]; }; -speedglm = derive { name="speedglm"; version="0.2-1.0"; sha256="13gjij9pb65j9c52d5cxl9n6fjmcwbhja4wdl4619dy5rj9vsyi4"; depends=[Matrix]; }; +speedglm = derive { name="speedglm"; version="0.3"; sha256="07pq0ymg7x9c9pq79d476slca43jv4682iackd446glw2qffac1y"; depends=[MASS Matrix]; }; speff2trial = derive { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; sperich = derive { name="sperich"; version="1.5-5"; sha256="0xwzyfx3z06lapvhzdzrfr9hw2hm8d0cyfmc29p5fcplmjm24idh"; depends=[]; }; sperrorest = derive { name="sperrorest"; version="0.2-1"; sha256="17jq8r98pq3hsyiinxg30lddxwpwi696srsvm3lfxrzk11076j6v"; depends=[ROCR rpart]; }; -spfrontier = derive { name="spfrontier"; version="0.1.12"; sha256="1jy1604gppis7vbn55pv13bywy1aqwzshwj03bbfln0qxikzqzi0"; depends=[moments ezsim tmvtnorm mvtnorm maxLik spdep]; }; +spfrontier = derive { name="spfrontier"; version="0.1.12"; sha256="1jy1604gppis7vbn55pv13bywy1aqwzshwj03bbfln0qxikzqzi0"; depends=[ezsim maxLik moments mvtnorm spdep tmvtnorm]; }; spgrass6 = derive { name="spgrass6"; version="0.8-6"; sha256="0vpv2vycd6rdnwm1f73733x1nclhr2x4x1s5116szskni77b0pii"; depends=[sp XML]; }; spgs = derive { name="spgs"; version="1.0"; sha256="1f75dvp6m5w5phg158ykvl4myvw6q4vysb2pc3bgm0f9fpcadfip"; depends=[]; }; spgwr = derive { name="spgwr"; version="0.6-26"; sha256="02kwpg927r2d2zrnhb5cjp1p8j0pal344hzvzsl4d0hz0xcipp8f"; depends=[sp]; }; sphereplot = derive { name="sphereplot"; version="1.5"; sha256="1i1p20h95cgw5wqp9bwfs9nygm4dxzsggz08ncjs1xrsvhhq9air"; depends=[rgl]; }; -sphet = derive { name="sphet"; version="1.6"; sha256="0149wkak7lp2hj69d83rn05fzh9bsvyc1kyg0d3b69sx92kqlwr0"; depends=[nlme spdep Matrix sp]; }; +sphet = derive { name="sphet"; version="1.6"; sha256="0149wkak7lp2hj69d83rn05fzh9bsvyc1kyg0d3b69sx92kqlwr0"; depends=[Matrix nlme sp spdep]; }; spi = derive { name="spi"; version="1.1"; sha256="0gc504f7sji5x0kmsidnwfm7l5g4b1asl3jkn2jzsf2nvjnplx1z"; depends=[]; }; spider = derive { name="spider"; version="1.3-0"; sha256="1p6f8mlm055xq3qwa4bqn9kvq60p8fn2w0cc6qcr22cblm5ww7jp"; depends=[ape pegas]; }; spiders = derive { name="spiders"; version="1.0"; sha256="1n3ym9vc3vzjzm35z29sz4mz8sa25r761y0ph45srhq0lv7c66w6"; depends=[plyr]; }; -spikeSlabGAM = derive { name="spikeSlabGAM"; version="1.1-8"; sha256="0h9b3hhnsqbxbxww7jhbkqf1wl72q347naxpjjbz3q5p2y8yli4z"; depends=[ggplot2 akima coda cluster gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; +spikeSlabGAM = derive { name="spikeSlabGAM"; version="1.1-8"; sha256="0h9b3hhnsqbxbxww7jhbkqf1wl72q347naxpjjbz3q5p2y8yli4z"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; spikeslab = derive { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; splancs = derive { name="splancs"; version="2.01-37"; sha256="0q548i76107laa9yrsjxqvwhl8zyhlib557qqr8aa7kjg6j0p5fn"; depends=[sp]; }; splitstackshape = derive { name="splitstackshape"; version="1.4.2"; sha256="0m9karfh0pcy0jj3dzq87vybxv9gmcrq5m2k7byxpki95apbrsmg"; depends=[data_table]; }; -splm = derive { name="splm"; version="1.3-7"; sha256="1bfi80vg129v8d0vp7sigbhskl227lmbry1vmklvcczrjqf2bh45"; depends=[spdep plm maxLik MASS bdsmatrix ibdreg nlme Matrix spam]; }; +splm = derive { name="splm"; version="1.3-7"; sha256="1bfi80vg129v8d0vp7sigbhskl227lmbry1vmklvcczrjqf2bh45"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; spls = derive { name="spls"; version="2.2-1"; sha256="0zgk9qd825zqgikpkg13jm8hi6ncg48qw5f985bi145nwy9j19xs"; depends=[MASS nnet pls]; }; splus2R = derive { name="splus2R"; version="1.2-0"; sha256="0kmyr1azyh0m518kzwvvgz7hv1x5myj37xn7w2gfn0vbn5xl8pv1"; depends=[]; }; splusTimeDate = derive { name="splusTimeDate"; version="2.5.0-135"; sha256="0hghggdcr70vfjx4npj37nmd96qvgrp1gpwa9bznvjkvyfawwy6i"; depends=[]; }; splusTimeSeries = derive { name="splusTimeSeries"; version="1.5.0-73"; sha256="1csk0ffgg1bi2k1m2bbxl6aqqqxf6i8sc8d4azip8ck7rn8vya46"; depends=[splusTimeDate]; }; -spnet = derive { name="spnet"; version="0.9.0.6"; sha256="1kbf53ww2wdr2nsml9zhzd80dhi48izw1nwjszv9jqidd6nk7v29"; depends=[sp shape]; }; -spocc = derive { name="spocc"; version="0.2.4"; sha256="0hhjdx3vgzfwf368pvmapgb5hll659mwkyzvgagvzz90sm44134a"; depends=[ggplot2 rgbif rinat rbison ecoengine rebird AntWeb ggmap maptools rworldmap sp rgeos lubridate RColorBrewer httr rgdal leafletR whisker gistr]; }; +spnet = derive { name="spnet"; version="0.9.0.6"; sha256="1kbf53ww2wdr2nsml9zhzd80dhi48izw1nwjszv9jqidd6nk7v29"; depends=[shape sp]; }; +spocc = derive { name="spocc"; version="0.2.4"; sha256="0hhjdx3vgzfwf368pvmapgb5hll659mwkyzvgagvzz90sm44134a"; depends=[AntWeb ecoengine ggmap ggplot2 gistr httr leafletR lubridate maptools rbison RColorBrewer rebird rgbif rgdal rgeos rinat rworldmap sp whisker]; }; sporm = derive { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; sprex = derive { name="sprex"; version="1.1"; sha256="1lwkdi8g1dlfdnxxvspgpz6f5h2gml176xhfrcxa9gcy3y9rlcpm"; depends=[]; }; -sprint = derive { name="sprint"; version="1.0.7"; sha256="1yzx1qjpxx9yc0hbm1mmha5b7aq13iflq66af597b7yj6abm7zjp"; depends=[rlecuyer ff randomForest boot e1071]; }; -sprinter = derive { name="sprinter"; version="1.1.0"; sha256="12v4l4fxijh2d46yzs0w4235a8raip5rfbxskl0dw7701ryh7n8g"; depends=[CoxBoost survival GAMBoost randomForestSRC LogicReg]; }; -sprm = derive { name="sprm"; version="1.1"; sha256="0xnbdnzgf54r93bvnyjcdcqlr0q7s7f2cvayw681zi0ig3z633j0"; depends=[ggplot2 cvTools reshape2 pcaPP]; }; +sprint = derive { name="sprint"; version="1.0.7"; sha256="1yzx1qjpxx9yc0hbm1mmha5b7aq13iflq66af597b7yj6abm7zjp"; depends=[boot e1071 ff randomForest rlecuyer]; }; +sprinter = derive { name="sprinter"; version="1.1.0"; sha256="12v4l4fxijh2d46yzs0w4235a8raip5rfbxskl0dw7701ryh7n8g"; depends=[CoxBoost GAMBoost LogicReg randomForestSRC survival]; }; +sprm = derive { name="sprm"; version="1.1"; sha256="0xnbdnzgf54r93bvnyjcdcqlr0q7s7f2cvayw681zi0ig3z633j0"; depends=[cvTools ggplot2 pcaPP reshape2]; }; sprsmdl = derive { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; spsmooth = derive { name="spsmooth"; version="1.1-3"; sha256="09b740586zyi8npq0bmy8qifs9rq0rzhs9c300fr6pjpc7134xn4"; depends=[mgcv]; }; -spsurvey = derive { name="spsurvey"; version="2.6"; sha256="1s48acqi502mdabhymhn0jjsghnlh2w6wnrfaa9gv0a7xjvjkydq"; depends=[sp deldir foreign MASS rgeos]; }; +spsurvey = derive { name="spsurvey"; version="3.0"; sha256="15i10a6hhk1wwnyd4lbrqaql8i4s10302bxmpr0s5cyifs084l77"; depends=[deldir foreign MASS rgeos sp]; }; spt = derive { name="spt"; version="1.13-8-8"; sha256="18s74pxfmsjaj92z2a34nq90caf61s84c616yv33a0xvfvp32qr5"; depends=[]; }; -sptm = derive { name="sptm"; version="14.10-11"; sha256="1g7dqfsyy0cvv3idx16bpny9z4f638aprbc50x8kk4zfk3km7wnr"; depends=[survival survey kyotil]; }; -spuRs = derive { name="spuRs"; version="2.0.0"; sha256="0lbc3nny6idijdaxrxfkfrn40bxfyp9z3yl9mwb1k6cyd10v5mfj"; depends=[MASS lattice]; }; -sqldf = derive { name="sqldf"; version="0.4-10"; sha256="0n8yvrg3gjgbc3vzq0vlf7fwhgm28kwf0jv25qy44x21n6fg11h7"; depends=[gsubfn proto RSQLite DBI chron]; }; -sqliter = derive { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[stringr functional DBI RSQLite]; }; -sqlshare = derive { name="sqlshare"; version="1.0.3"; sha256="1qy8vlzi6i4wsr53i71jlsv1b7ww254mbk2qzsvmcrranf42zbp8"; depends=[RCurl]; }; -sqlutils = derive { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[roxygen2 stringr DBI]; }; +sptm = derive { name="sptm"; version="14.10-11"; sha256="1g7dqfsyy0cvv3idx16bpny9z4f638aprbc50x8kk4zfk3km7wnr"; depends=[kyotil survey survival]; }; +spuRs = derive { name="spuRs"; version="2.0.0"; sha256="0lbc3nny6idijdaxrxfkfrn40bxfyp9z3yl9mwb1k6cyd10v5mfj"; depends=[lattice MASS]; }; +sqldf = derive { name="sqldf"; version="0.4-10"; sha256="0n8yvrg3gjgbc3vzq0vlf7fwhgm28kwf0jv25qy44x21n6fg11h7"; depends=[chron DBI gsubfn proto RSQLite]; }; +sqliter = derive { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; +sqlutils = derive { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; squash = derive { name="squash"; version="1.0.6"; sha256="16iplngzzlif999z821a9bwx9jlmikdvwnk6p6d9w75b1fsbc0pz"; depends=[]; }; sra = derive { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; }; -srd = derive { name="srd"; version="1.0"; sha256="04j2gj7fn7p2rm34haayswrfhn6w5lln439d07m9g4c020kqqsr3"; depends=[plyr animation colorspace stringr survival]; }; -ss3sim = derive { name="ss3sim"; version="0.8.2"; sha256="1gj3kf4ccd5n2jr4sm50gny5x1zq4brkhqgw0nww41spnimascfr"; depends=[plyr r4ss gtools lubridate reshape2]; }; +srd = derive { name="srd"; version="1.0"; sha256="04j2gj7fn7p2rm34haayswrfhn6w5lln439d07m9g4c020kqqsr3"; depends=[animation colorspace plyr stringr survival]; }; +ss3sim = derive { name="ss3sim"; version="0.8.2"; sha256="1gj3kf4ccd5n2jr4sm50gny5x1zq4brkhqgw0nww41spnimascfr"; depends=[gtools lubridate plyr r4ss reshape2]; }; ssanv = derive { name="ssanv"; version="1.0-2"; sha256="18ib0djqxjpp4xgvsffwqgxqljpwc24ysxj26phpr6p8kdl3hr2f"; depends=[]; }; +sscor = derive { name="sscor"; version="0.1"; sha256="0bvj6kzkjgdjwia907if8jlicygkh5gnk3s159gv9wvc50rjjab3"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; sse = derive { name="sse"; version="0.5-4"; sha256="126dc4gk0hynwfz887d3wdcs7xacmmjhpf82sbhmhvg73dc1r5jz"; depends=[lattice]; }; +ssfa = derive { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; ssfit = derive { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; ssh_utils = derive { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; ssize_fdr = derive { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; -ssizeRNA = derive { name="ssizeRNA"; version="1.1.1"; sha256="19l7kmkc1cnggf0rcqxphifw5y6iknkxas0ik3kfd1swsgmvw587"; depends=[MASS ssize_fdr]; }; -ssmrob = derive { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[sampleSelection robustbase mvtnorm MASS]; }; +ssizeRNA = derive { name="ssizeRNA"; version="1.1.2"; sha256="11dnc3wqj0i5blzc9ndpgl48xm5fibjgx9sxrzdcza0gbj8qpadm"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; +ssmrob = derive { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[MASS mvtnorm robustbase sampleSelection]; }; sspline = derive { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; }; sspse = derive { name="sspse"; version="0.5-1"; sha256="0gih9d0g4kp08c4v01p699lavb491khyj16i8vldhcb194bvs8m5"; depends=[coda]; }; sss = derive { name="sss"; version="0.0-11"; sha256="0k7p1ws0w7wg9wyxcg1zpk8q6kr32l3jl6yd9r4qmzq04dwqrdgz"; depends=[plyr XML]; }; ssvd = derive { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; -ssym = derive { name="ssym"; version="1.5.2"; sha256="0c3c4disiicavr8m2yvvi2k38gnw4akdqp0f1v6647i5zj160zkr"; depends=[GIGrvg numDeriv normalp Formula]; }; -st = derive { name="st"; version="1.2.4"; sha256="1lnrzz7kc21mrs8xrqs21fcwd92d5kzhvfiq36j02982n18f6c64"; depends=[sda fdrtool corpcor]; }; -staTools = derive { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[Rcpp VGAM magicaxis Rcpp]; }; +ssym = derive { name="ssym"; version="1.5.3"; sha256="0d8d0s9k87w7mxlvkzj307wkmxghc0qzhn7crm3fvcb1phf115p8"; depends=[Formula GIGrvg normalp numDeriv survival]; }; +st = derive { name="st"; version="1.2.4"; sha256="1lnrzz7kc21mrs8xrqs21fcwd92d5kzhvfiq36j02982n18f6c64"; depends=[corpcor fdrtool sda]; }; +staTools = derive { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; }; stab = derive { name="stab"; version="0.1.9"; sha256="1awf8bj3c4wvs818g4wfmw23vdhv06kn229cmhqbr7dsz933vwwf"; depends=[MASS reshape]; }; stabledist = derive { name="stabledist"; version="0.7-0"; sha256="06xd3kkyand0gzyj5phxlfjyygn5jlsq7gbwh62pc390by7ld2c7"; depends=[]; }; stabs = derive { name="stabs"; version="0.5-1"; sha256="0mlwbf8wf38mr39si31i4iz00hpsmchbhgagwgsf3x9422zpq92p"; depends=[]; }; +stackoverflow = derive { name="stackoverflow"; version="0.1.2"; sha256="1psw96iscgsx11drmcnh0yjg2jjcaa4akmywh337i6gbgam8kj61"; depends=[]; }; stacomirtools = derive { name="stacomirtools"; version="0.3"; sha256="1lbbnvmilf3j3hyhvpkyjd4b4sf3zwygilb8x0kjn2jfhkxnx4c1"; depends=[RODBC xtable]; }; -stagePop = derive { name="stagePop"; version="1.0-1"; sha256="0yb1dbgmns6km0p35wny6f4v7xl4225v8lww0wmzrvdw7l2m8m8d"; depends=[deSolve PBSddesolve]; }; +stagePop = derive { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stam = derive { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; stargazer = derive { name="stargazer"; version="5.1"; sha256="0ar0qm289ncsns2pqkabpyjc90ws0il1q7fp5206wqghgsvqjcc0"; depends=[]; }; startupmsg = derive { name="startupmsg"; version="0.9"; sha256="1l75w4v1cf4kkb05akhgzk5n77zsj6h20ds8y0aa6kd2208zxd9f"; depends=[]; }; -stashR = derive { name="stashR"; version="0.3-5"; sha256="1lnpi1vb043aj4b9vmmy56anj4344709986b27hqaqk5ajzq9c3w"; depends=[filehash digest]; }; -statar = derive { name="statar"; version="0.1.3"; sha256="1lkbp6ki4w0gm3l683xar44vrkw69883qvr73mc179bdh31znqli"; depends=[data_table dplyr ggplot2 Hmisc lazyeval lfe lubridate matrixStats stargazer stringr tidyr]; }; +stashR = derive { name="stashR"; version="0.3-5"; sha256="1lnpi1vb043aj4b9vmmy56anj4344709986b27hqaqk5ajzq9c3w"; depends=[digest filehash]; }; +statar = derive { name="statar"; version="0.3.0"; sha256="0ynvabdyp5vy90gz7c9ywbdyg8dp4vmmz2zjd7z8b5jjk0f8xsf1"; depends=[data_table dplyr ggplot2 lazyeval matrixStats proto stargazer stringr tidyr]; }; statcheck = derive { name="statcheck"; version="1.0.1"; sha256="01b40bjagkj6hfyq9ppdlaafwgykv8p9s8sm0abd3if82ivdpixj"; depends=[plyr]; }; -statebins = derive { name="statebins"; version="1.0"; sha256="1mqky4nb31xjhn922csvv8ps2fwgcgazxs56rcn3ka32c59a4mmg"; depends=[ggplot2 scales gridExtra RColorBrewer]; }; +statebins = derive { name="statebins"; version="1.0"; sha256="1mqky4nb31xjhn922csvv8ps2fwgcgazxs56rcn3ka32c59a4mmg"; depends=[ggplot2 gridExtra RColorBrewer scales]; }; statfi = derive { name="statfi"; version="0.9.8"; sha256="0kg9bj2mmd95ysg604rcg4szqx3whbqm14fwivnd110jgfy20gk2"; depends=[pxR]; }; +stationaRy = derive { name="stationaRy"; version="0.2"; sha256="1ylamq6mc0hq3hq17w7s1v9dv7wdzyn4afxh1zy739532p0xxm41"; depends=[downloader lubridate plyr proj4 sp]; }; statmod = derive { name="statmod"; version="1.4.21"; sha256="138lh9qa25w6vaksbq43iqisj4c8hvmkjc3q81fn7m8b7zlnz6da"; depends=[]; }; -statnet = derive { name="statnet"; version="2014.2.0"; sha256="0xp8xnqb32wzkxfm7f34z6mnsd9id8an5829n16czwldj9vv6s10"; depends=[network ergm sna networkDynamic tergm ergm_count latentnet statnet_common]; }; +statnet = derive { name="statnet"; version="2014.2.0"; sha256="0xp8xnqb32wzkxfm7f34z6mnsd9id8an5829n16czwldj9vv6s10"; depends=[ergm ergm_count latentnet network networkDynamic sna statnet_common tergm]; }; statnet_common = derive { name="statnet.common"; version="3.2.2"; sha256="1xdkc1pyf6wfb86dwz6bkjli5qw6yz6dvlxwp5bpgkpg83aa9n7g"; depends=[]; }; -stcm = derive { name="stcm"; version="0.1.0"; sha256="0j2yhmg6m69igg3ilrf7rq3l37aqab7h4fx08k3gfgc8005w7ils"; depends=[QCA plyr ggplot2 XML randomForest caret dendextend magrittr]; }; +statnetWeb = derive { name="statnetWeb"; version="0.3.4"; sha256="1nkis4l6yzpjcwxryskqfjgc2naxplzjc3gpp6xvpl0pcvw9mdk7"; depends=[ergm network RColorBrewer shiny sna]; }; +stcm = derive { name="stcm"; version="0.1.0"; sha256="0j2yhmg6m69igg3ilrf7rq3l37aqab7h4fx08k3gfgc8005w7ils"; depends=[caret dendextend ggplot2 magrittr plyr QCA randomForest XML]; }; steepness = derive { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; stellaR = derive { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; }; stepPlr = derive { name="stepPlr"; version="0.92"; sha256="16j32sk7ri4jdgss7vw5zz7s42rxk7rs376iyxzzpy1zcc9b64rv"; depends=[]; }; @@ -6170,37 +6317,38 @@ stheoreme = derive { name="stheoreme"; version="1.2"; sha256="14w3jcbs8y8cz44xlq stilt = derive { name="stilt"; version="1.0.1"; sha256="1vrbbic0vqzgy574kzcr38iqyhax4wa6zl6w74n65z15map2fyma"; depends=[fields]; }; stima = derive { name="stima"; version="1.1"; sha256="1i8l7pfnqxx660h3r2jf6a9bj5ikg9hw7v8apwk98ms8l7q77p5l"; depends=[rpart]; }; stinepack = derive { name="stinepack"; version="1.3"; sha256="0kjpcjqkwndqs7cyc6w62z1nnkqmhkifz2w0bi341jh0ybmak4fq"; depends=[]; }; -stm = derive { name="stm"; version="1.0.8"; sha256="0dnzkqh3hnnjm0wmzpn48bwylmh49a8ib263bzvjaqpi70mck49p"; depends=[matrixStats slam lda stringr Matrix glmnet]; }; +stm = derive { name="stm"; version="1.0.8"; sha256="0dnzkqh3hnnjm0wmzpn48bwylmh49a8ib263bzvjaqpi70mck49p"; depends=[glmnet lda Matrix matrixStats slam stringr]; }; stmCorrViz = derive { name="stmCorrViz"; version="1.1"; sha256="03bjxil8v4ixgbabg2gq78xgqy4s3wh89hq1z5598gxysz12z3ji"; depends=[jsonlite stm]; }; -stocc = derive { name="stocc"; version="1.23"; sha256="183rv1l1hpa691f3xf455bv8dzdw6ac79zg3v99zksli6i7c8jdz"; depends=[truncnorm coda Matrix fields]; }; +stocc = derive { name="stocc"; version="1.23"; sha256="183rv1l1hpa691f3xf455bv8dzdw6ac79zg3v99zksli6i7c8jdz"; depends=[coda fields Matrix truncnorm]; }; stochprofML = derive { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; -stochvol = derive { name="stochvol"; version="1.0.0"; sha256="1c083gmfq9ldd41235shcb5i3ggd92fxvimhaavljnr1wsls5f2b"; depends=[coda Rcpp Rcpp]; }; +stochvol = derive { name="stochvol"; version="1.1.1"; sha256="1cfav3i7w5i3rayajdybjmwvmqvqj58zk8sk0icw52r5l4ki2d6s"; depends=[coda Rcpp]; }; stockPortfolio = derive { name="stockPortfolio"; version="1.2"; sha256="0k5ss6lf9yhcvc4hwqmcfpdn6qkbq5kaw0arldkl46391kac3bd1"; depends=[]; }; -stocks = derive { name="stocks"; version="1.1.1"; sha256="1qwd16bw40w2ns7b0n9wm8l344r4vyk27rmg0vr5512zsrcjkcfb"; depends=[rbenchmark Rcpp Rcpp]; }; +stocks = derive { name="stocks"; version="1.1.1"; sha256="1qwd16bw40w2ns7b0n9wm8l344r4vyk27rmg0vr5512zsrcjkcfb"; depends=[rbenchmark Rcpp]; }; stoichcalc = derive { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; -stosim = derive { name="stosim"; version="0.0.12"; sha256="0c4sj5iirm542hx782izfdmy2m3kl5q28l10xjj0ib4xn5y6yx3c"; depends=[tcltk2 Rcpp Rcpp]; }; -stpp = derive { name="stpp"; version="1.0-5"; sha256="1444dbwm0nyb5k8xjfrm25x984a7h9ln2vddrwjszfpmscv0iwm1"; depends=[splancs KernSmooth spatstat]; }; -stppResid = derive { name="stppResid"; version="1.1"; sha256="0hgzsyy5y0sqd4d2agdr7p2kq0w51vs8f63dvj6j49h8cvgiws2x"; depends=[deldir splancs cubature]; }; +stosim = derive { name="stosim"; version="0.0.12"; sha256="0c4sj5iirm542hx782izfdmy2m3kl5q28l10xjj0ib4xn5y6yx3c"; depends=[Rcpp tcltk2]; }; +stpp = derive { name="stpp"; version="1.0-5"; sha256="1444dbwm0nyb5k8xjfrm25x984a7h9ln2vddrwjszfpmscv0iwm1"; depends=[KernSmooth spatstat splancs]; }; +stppResid = derive { name="stppResid"; version="1.1"; sha256="0hgzsyy5y0sqd4d2agdr7p2kq0w51vs8f63dvj6j49h8cvgiws2x"; depends=[cubature deldir splancs]; }; strap = derive { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; -strataG = derive { name="strataG"; version="0.9.4"; sha256="0lxp6s0gfqxyla7mx19fbx6w8am3islv02iyyixi94xbwphpcqf3"; depends=[swfscMisc pegas ape MASS reshape2 Rcpp]; }; +strataG = derive { name="strataG"; version="0.9.4"; sha256="0lxp6s0gfqxyla7mx19fbx6w8am3islv02iyyixi94xbwphpcqf3"; depends=[ape MASS pegas Rcpp reshape2 swfscMisc]; }; stratification = derive { name="stratification"; version="2.2-5"; sha256="0cgr49gvh12s6rr43878jxjkir7b7absqgbfsvj1bjlf2r3gyqy9"; depends=[]; }; stratigraph = derive { name="stratigraph"; version="0.66"; sha256="1idn5rwar9pxp1vsra68wrlhagmc92y5rs7vn4h63p35p357qdwz"; depends=[]; }; straweib = derive { name="straweib"; version="1.0"; sha256="0bh2f4n4i7fiki52sa57v96757qw1gn1lcn7vgxmc5hk5rzp2mi8"; depends=[]; }; -stream = derive { name="stream"; version="1.1-1"; sha256="0l9sywmajydmd0nkdlbhc4k5lf7qjrndjj6clw5j2mgw97cqaag5"; depends=[hash proxy animation clue cluster clusterGeneration fpc MASS mlbench]; }; -streamMOA = derive { name="streamMOA"; version="1.0-0"; sha256="176llkj9q0p5ym09iagaw5cag6ln94bw04pjl120jnxn6p7i22s2"; depends=[stream rJava]; }; +stream = derive { name="stream"; version="1.1-4"; sha256="1pz9ck6rxxwnzrhixs015k3sy2gl8hwxyxwr56ykpkrcn6kgzm3f"; depends=[animation clue cluster clusterGeneration fpc MASS mlbench proxy Rcpp]; }; +streamMOA = derive { name="streamMOA"; version="1.1-0"; sha256="0h45saz5jf9jfsajy987ljpfpm2cxigyqkgmybd0m3aqyrqlljbc"; depends=[rJava stream]; }; streamR = derive { name="streamR"; version="0.2.1"; sha256="1ml33mj7zqlzfyyam23xk5d25jkm3qr7rfj2kc5j5vgsih6kr0gl"; depends=[RCurl rjson]; }; -stremo = derive { name="stremo"; version="0.2"; sha256="13b9xnd8ykxrm8gnakh0ixbsb7yppqv3isga8dsz473wzy82y6h1"; depends=[lavaan numDeriv MASS]; }; -stressr = derive { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[xts XML lattice latticeExtra]; }; +stremo = derive { name="stremo"; version="0.2"; sha256="13b9xnd8ykxrm8gnakh0ixbsb7yppqv3isga8dsz473wzy82y6h1"; depends=[lavaan MASS numDeriv]; }; +stressr = derive { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; stringdist = derive { name="stringdist"; version="0.9.0"; sha256="0304a3qyssq2l2c7da5a90fca32n3ph5jixqnqvb3jwzdb8dxm2f"; depends=[]; }; +stringgaussnet = derive { name="stringgaussnet"; version="1.0"; sha256="11pkvbq2lddwhrwrpspqhjkma4ixl9hv8w7m4jrnlx8dkabibw25"; depends=[AnnotationDbi biomaRt httr igraph limma pspearman RCurl RJSONIO simone VennDiagram]; }; stringi = derive { name="stringi"; version="0.4-1"; sha256="01ig59cmvrk9vfh4l84i2h4vgddfspyrxwh3am33apv8r8vr4bnj"; depends=[]; }; -stringr = derive { name="stringr"; version="1.0.0"; sha256="0jnz6r9yqyf7dschr2fnn1slg4wn6b4ik5q00j4zrh43bfw7s9pq"; depends=[stringi magrittr]; }; -strucchange = derive { name="strucchange"; version="1.5-0"; sha256="17ikp36ahnsx1q3avqkz5r2n2yagzq7j6m515vdm8rxgv0538is3"; depends=[zoo sandwich]; }; -structSSI = derive { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[igraph rjson ggplot2 reshape2]; }; -strum = derive { name="strum"; version="0.6"; sha256="1jd8h8fnjv4a58shl0j9fdlds7xns1j18b9qaqhrfa4hrdrw75s9"; depends=[pedigree Matrix MASS Rcpp Rcpp RcppArmadillo]; }; -strvalidator = derive { name="strvalidator"; version="1.4.0"; sha256="1zgfy5w4qwcm3jdqigahxi7xn8328jr568ssbj99ibzdj0m0hmfw"; depends=[gridExtra ggplot2 gWidgets gtable plyr scales gWidgetsRGtk2 RGtk2 data_table]; }; +stringr = derive { name="stringr"; version="1.0.0"; sha256="0jnz6r9yqyf7dschr2fnn1slg4wn6b4ik5q00j4zrh43bfw7s9pq"; depends=[magrittr stringi]; }; +strucchange = derive { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[sandwich zoo]; }; +structSSI = derive { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[ggplot2 igraph multtest reshape2 rjson]; }; +strum = derive { name="strum"; version="0.6.2"; sha256="0f5cb7cfvqhmnv4sjfr58lns4fclmr8iyka595zddy9f6dv5rqp1"; depends=[graph MASS Matrix pedigree Rcpp RcppArmadillo Rgraphviz]; }; +strvalidator = derive { name="strvalidator"; version="1.5.0"; sha256="0b71drc80hqmqi4kspy0700wss4pm88x2gp83jsw1jrfrrrfw9jk"; depends=[data_table ggplot2 gridExtra gtable gWidgets gWidgetsRGtk2 plyr RGtk2 scales]; }; stsm = derive { name="stsm"; version="1.7"; sha256="080xakf7rf53vzv64g338hz87sk4cqfwd6ly4f122sxvn4xypq3n"; depends=[KFKSDS]; }; stsm_class = derive { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; }; -stylo = derive { name="stylo"; version="0.5.9"; sha256="061nfjh932qjlzvnarpwvzar0qv7ij8l6m3iax1jilygzhfqfyin"; depends=[tcltk2 ape pamr e1071 class lattice tsne]; }; +stylo = derive { name="stylo"; version="0.5.9"; sha256="061nfjh932qjlzvnarpwvzar0qv7ij8l6m3iax1jilygzhfqfyin"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; subgroup = derive { name="subgroup"; version="1.1"; sha256="1n3qw7vih1rngmp4fwjbs050ngby840frj28i8x7d7aa52ha2syf"; depends=[]; }; subplex = derive { name="subplex"; version="1.1-4"; sha256="0c6y5ibyxh0mpn77f7kwrmkpb3mah10hbqhwqmz4i1lfv58mb4zk"; depends=[]; }; @@ -6210,31 +6358,33 @@ subsemble = derive { name="subsemble"; version="0.0.9"; sha256="0vzjmxpdwagqb9p2 subtype = derive { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudoku = derive { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; sudokuAlt = derive { name="sudokuAlt"; version="0.1-4"; sha256="14jqwsp692dq0bfnk2i70qc42inb6jbissvp88c5r2cgzc1ry072"; depends=[]; }; -summarytools = derive { name="summarytools"; version="0.3"; sha256="1hhkhpyaj8sc62vap5s7ds0kmk1jiy6gdvsz65ynqy2qfz58c3ms"; depends=[htmltools pander xtable rapportools rstudioapi]; }; -supclust = derive { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[rpart class]; }; +summarytools = derive { name="summarytools"; version="0.3"; sha256="1hhkhpyaj8sc62vap5s7ds0kmk1jiy6gdvsz65ynqy2qfz58c3ms"; depends=[htmltools pander rapportools rstudioapi xtable]; }; +supclust = derive { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; +supcluster = derive { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; superMDS = derive { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; -superbiclust = derive { name="superbiclust"; version="1.1"; sha256="1gzjbzbl8y1nzdfhyd6dlrwjq8mwj43a26qav84s1bdzwx6dra48"; depends=[biclust Matrix]; }; -superdiag = derive { name="superdiag"; version="1.1"; sha256="0pa3mv74riabpm7j4587zww2364fszzlw48ijj1apcgz8y6pyqbw"; depends=[coda boa]; }; +superbiclust = derive { name="superbiclust"; version="1.1"; sha256="1gzjbzbl8y1nzdfhyd6dlrwjq8mwj43a26qav84s1bdzwx6dra48"; depends=[biclust fabia Matrix]; }; +superdiag = derive { name="superdiag"; version="1.1"; sha256="0pa3mv74riabpm7j4587zww2364fszzlw48ijj1apcgz8y6pyqbw"; depends=[boa coda]; }; superpc = derive { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; }; support_BWS = derive { name="support.BWS"; version="0.1-3"; sha256="1qlh2zgmr3b6gz3xmncjawgg08c6kgfg3d2m9x78iw95x7p3p5h8"; depends=[]; }; support_CEs = derive { name="support.CEs"; version="0.3-3"; sha256="0772j0sssf6fwig9v1ra83fwas8109yf30n0xq8s5cxsnnn41m2y"; depends=[DoE_base MASS simex]; }; -surface = derive { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape ouch MASS geiger]; }; -surv2sampleComp = derive { name="surv2sampleComp"; version="1.0-4"; sha256="1ihz71vzrkd5ksy7421myrgkbww0z5k0ywcb2bfalxx2bd2cs2wf"; depends=[survival plotrix flexsurv survC1]; }; +surface = derive { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; }; +surv2sampleComp = derive { name="surv2sampleComp"; version="1.0-4"; sha256="1ihz71vzrkd5ksy7421myrgkbww0z5k0ywcb2bfalxx2bd2cs2wf"; depends=[flexsurv plotrix survC1 survival]; }; survAUC = derive { name="survAUC"; version="1.0-5"; sha256="0bcj982ib1h0sjql09zbvx3h1m96jy9q37krmk6kfzw25ms6bzzr"; depends=[survival]; }; -survAccuracyMeasures = derive { name="survAccuracyMeasures"; version="1.2"; sha256="1i41xkvqpxpq9spryh1syp57ymlzw71ygdjqn41rv8jjc9q52x9g"; depends=[survival Rcpp Rcpp RcppArmadillo]; }; +survAccuracyMeasures = derive { name="survAccuracyMeasures"; version="1.2"; sha256="1i41xkvqpxpq9spryh1syp57ymlzw71ygdjqn41rv8jjc9q52x9g"; depends=[Rcpp RcppArmadillo survival]; }; survC1 = derive { name="survC1"; version="1.0-2"; sha256="1bidjhq3k5ab7gqj1b2afngip7pp6c9c7q0m6ww7h7i2vg505l7v"; depends=[survival]; }; -survIDINRI = derive { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survival survC1]; }; -survJamda = derive { name="survJamda"; version="1.1.3"; sha256="03cwp1nw8nnkcjiafysbc1w24fwb7j5ksr01rlpf0g0qdi9zlgwi"; depends=[survival survivalROC ecodist survJamda_data]; }; +survIDINRI = derive { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survC1 survival]; }; +survJamda = derive { name="survJamda"; version="1.1.3"; sha256="03cwp1nw8nnkcjiafysbc1w24fwb7j5ksr01rlpf0g0qdi9zlgwi"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; -survMisc = derive { name="survMisc"; version="0.4.6"; sha256="1d16kkzg0clwvv5rgv4rlm79dxhxhhzv9bkx6420izmyx0wjcnhn"; depends=[survival KMsurv combinat Hmisc zoo km_ci ggplot2 data_table gridExtra rpart gam]; }; +survMisc = derive { name="survMisc"; version="0.4.6"; sha256="1d16kkzg0clwvv5rgv4rlm79dxhxhhzv9bkx6420izmyx0wjcnhn"; depends=[combinat data_table gam ggplot2 gridExtra Hmisc km_ci KMsurv rpart survival zoo]; }; survPresmooth = derive { name="survPresmooth"; version="1.1-8"; sha256="1qva7yx4vv99mgh3wqxdnbasa1gy0ixxyxpqrfbn6827whjzf91m"; depends=[]; }; survRM2 = derive { name="survRM2"; version="1.0-1"; sha256="1qcjdx4a9b9dg8jkzak6rq4d4byf9377h43f1m3icdgf79vghlhr"; depends=[survival]; }; -survSNP = derive { name="survSNP"; version="0.23.2"; sha256="0vpk5qdvsagv5pnap7ja7smqvibvfp5v7smhikbbwl0h6l83jjw4"; depends=[survival Rcpp lattice foreach xtable Rcpp]; }; -surveillance = derive { name="surveillance"; version="1.8-3"; sha256="10d170l0ah92awpa9cafxshpvmj3d206fqn5sm7bd73q87mvbgdp"; depends=[sp xtable polyCub Rcpp MASS Matrix spatstat Rcpp]; }; +survSNP = derive { name="survSNP"; version="0.23.2"; sha256="0vpk5qdvsagv5pnap7ja7smqvibvfp5v7smhikbbwl0h6l83jjw4"; depends=[foreach lattice Rcpp survival xtable]; }; +surveillance = derive { name="surveillance"; version="1.9-1"; sha256="0ki5in4pnqsilil76c3fdm3avl9pkb0z4d4jv015vqppp33z32y5"; depends=[MASS Matrix polyCub Rcpp sp spatstat xtable]; }; survexp_fr = derive { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; survey = derive { name="survey"; version="3.30-3"; sha256="0vcyph1vpnl4xaqd85ffh1gm0dqhvgr3343q0mlycmyq485x0idy"; depends=[]; }; -surveydata = derive { name="surveydata"; version="0.1-14"; sha256="1zcp3wb7yhsa59cl4bdw7p08vpviypvfa9hggwc60w7ashpky73i"; depends=[stringr plyr]; }; -survival = derive { name="survival"; version="2.38-1"; sha256="0kq0a6h1bmphp4vi1f3wzs5pddp3zw9vfi7vk6x27zglnwjhkfgm"; depends=[]; }; +surveydata = derive { name="surveydata"; version="0.1-14"; sha256="1zcp3wb7yhsa59cl4bdw7p08vpviypvfa9hggwc60w7ashpky73i"; depends=[plyr stringr]; }; +surveyeditor = derive { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; +survival = derive { name="survival"; version="2.38-2"; sha256="1qy9iav9h459ligpxqhg7rbn6ai39xij5qjyig7pcwmpgxqvdj69"; depends=[]; }; survivalMPL = derive { name="survivalMPL"; version="0.1.1"; sha256="0c4hr2q50snd5qm2drg4qzfkcz4klxr4jba6xpc8n2i8wn573cvc"; depends=[survival]; }; survivalROC = derive { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; survrec = derive { name="survrec"; version="1.2-2"; sha256="0b77ncr1wg2xqqg1bv1bvb48kmd9h3ja2dysiggvprzjrj7hdlmx"; depends=[boot]; }; @@ -6258,110 +6408,114 @@ svdvisual = derive { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m svgViewR = derive { name="svgViewR"; version="1.0.0"; sha256="0js3mc5lxzfwbnc30mn9k9g9jiy2aivqs08x0zcg9dir5n7gs9sg"; depends=[]; }; svmpath = derive { name="svmpath"; version="0.953"; sha256="0hqga4cwy1az8cckh3nkknbq1ag67f4m5xdg271f2jxvnmhdv6wv"; depends=[]; }; svyPVpack = derive { name="svyPVpack"; version="0.1-1"; sha256="15k5ziy2ng853jxl66wjr27lzc90l6i5qr08q8xgcs359vn02pmp"; depends=[survey]; }; -swamp = derive { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots MASS]; }; -sweidnumbr = derive { name="sweidnumbr"; version="0.2"; sha256="0zsijh9jf0pnil5n69ix408j3plbrnj0235whh9rch486ibyk779"; depends=[lubridate]; }; +swamp = derive { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots impute MASS]; }; +sweidnumbr = derive { name="sweidnumbr"; version="0.6.0"; sha256="1qdak16jnm436m7nlngarimlhx9sc6wwq9pfrcijq8240mh7xwa2"; depends=[lubridate stringr]; }; swfscMisc = derive { name="swfscMisc"; version="1.0.3"; sha256="0ciwvxpafpc6an58r1ffkab8kj4np6l2kbpkijnqnfbf6cya0aim"; depends=[mapdata maps]; }; -swirl = derive { name="swirl"; version="2.2.21"; sha256="0lpin7frm1a6y9lz0nyykhvydr1qbx85iqy24sm52r1vxycv2r8h"; depends=[stringr testthat httr yaml RCurl digest]; }; -switchnpreg = derive { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[MASS fda expm HiddenMarkov]; }; -sybil = derive { name="sybil"; version="1.2.6"; sha256="1d7q0dvpqxay86dy4zbllv78dsh0amr8n7wl0vkrb8jbakq4afip"; depends=[Matrix lattice]; }; +swirl = derive { name="swirl"; version="2.2.21"; sha256="0lpin7frm1a6y9lz0nyykhvydr1qbx85iqy24sm52r1vxycv2r8h"; depends=[digest httr RCurl stringr testthat yaml]; }; +switchnpreg = derive { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; +switchr = derive { name="switchr"; version="0.9.6"; sha256="0w1nf6jncs85hqbvddcrmdx9y1gd5702ab9180v9icp7al06kxzp"; depends=[]; }; +switchrGist = derive { name="switchrGist"; version="0.2.1"; sha256="0n8fzzsxm0m4yic133q07vki803zywhijadymrgyq7qlx3d1m97d"; depends=[gistr httpuv RJSONIO switchr]; }; +sybil = derive { name="sybil"; version="1.2.6"; sha256="1d7q0dvpqxay86dy4zbllv78dsh0amr8n7wl0vkrb8jbakq4afip"; depends=[lattice Matrix]; }; sybilDynFBA = derive { name="sybilDynFBA"; version="0.0.2"; sha256="1sqk6dwwfrwvgkwk6mra0i1dszhhvcwm58ax6m89sxk8n0nbmr4b"; depends=[sybil]; }; -sybilEFBA = derive { name="sybilEFBA"; version="1.0.2"; sha256="07c32xwql7sr217j8ixqd2pj43hhyr99vjdh7c106lsmqd1pifa4"; depends=[sybil Matrix]; }; +sybilEFBA = derive { name="sybilEFBA"; version="1.0.2"; sha256="07c32xwql7sr217j8ixqd2pj43hhyr99vjdh7c106lsmqd1pifa4"; depends=[Matrix sybil]; }; sybilSBML = derive { name="sybilSBML"; version="2.0.8"; sha256="1sxp0naws7d1ak0xna1sy87zzjrravwax0qvcd6vy4p0f39z06ci"; depends=[Matrix sybil]; }; -sybilccFBA = derive { name="sybilccFBA"; version="2.0.0"; sha256="0x0is1a56jyahaba6dk9inj5v248m8n46f70ynqyqp1xpiax1fkr"; depends=[sybil Matrix]; }; -sybilcycleFreeFlux = derive { name="sybilcycleFreeFlux"; version="1.0.1"; sha256="0ffmgnr239xz8864vmrqlhwwc97fqzzib6kwrsm7bszdnw1kkv3r"; depends=[sybil Matrix MASS]; }; -symbolicDA = derive { name="symbolicDA"; version="0.4-2"; sha256="1vn7r7b7yyn2kp8j3ghw50z49yzvwhm0izc6wgc7a99300xrr77s"; depends=[clusterSim XML rgl shapes e1071 ade4 cluster]; }; +sybilccFBA = derive { name="sybilccFBA"; version="2.0.0"; sha256="0x0is1a56jyahaba6dk9inj5v248m8n46f70ynqyqp1xpiax1fkr"; depends=[Matrix sybil]; }; +sybilcycleFreeFlux = derive { name="sybilcycleFreeFlux"; version="1.0.1"; sha256="0ffmgnr239xz8864vmrqlhwwc97fqzzib6kwrsm7bszdnw1kkv3r"; depends=[MASS Matrix sybil]; }; +symbolicDA = derive { name="symbolicDA"; version="0.4-2"; sha256="1vn7r7b7yyn2kp8j3ghw50z49yzvwhm0izc6wgc7a99300xrr77s"; depends=[ade4 cluster clusterSim e1071 rgl shapes XML]; }; symbols = derive { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; -symmoments = derive { name="symmoments"; version="1.2"; sha256="074k0285c0yri39zags420kjls6kjlvlhymg3r7y24h42zdy82d4"; depends=[mvtnorm cubature combinat multipol]; }; -synRNASeqNet = derive { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[parmigene GenKern igraph KernSmooth]; }; -synbreed = derive { name="synbreed"; version="0.10-5"; sha256="0qhcxmcxa0ixn6ql2dr7pq10g7hmv55rcn279wz4cg5mbgqkhvmm"; depends=[doBy BLR regress abind lattice igraph MASS LDheatmap qtl synbreedData]; }; +symmoments = derive { name="symmoments"; version="1.2"; sha256="074k0285c0yri39zags420kjls6kjlvlhymg3r7y24h42zdy82d4"; depends=[combinat cubature multipol mvtnorm]; }; +synRNASeqNet = derive { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; }; +synbreed = derive { name="synbreed"; version="0.11-10"; sha256="094gjps85w120vkj4542781zyf6frh9kv1hvphbmgxhsz8s6mll5"; depends=[abind BLR doBy igraph lattice LDheatmap MASS qtl regress]; }; synbreedData = derive { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n8726qv0jlizmkvnrqwjj1q4xaxvfmj9611rm47vckx"; depends=[]; }; -synchronicity = derive { name="synchronicity"; version="1.1.4"; sha256="0hcxwgf1irswwabgl0b6vb9q09nhxc1ljsm195lc8ql49sfj9mfz"; depends=[bigmemory_sri BH]; }; +synchronicity = derive { name="synchronicity"; version="1.1.4"; sha256="0hcxwgf1irswwabgl0b6vb9q09nhxc1ljsm195lc8ql49sfj9mfz"; depends=[BH bigmemory_sri]; }; synchrony = derive { name="synchrony"; version="0.2.3"; sha256="0fi9a3j8dfslf1nqx8d53fi635y3aq8isxw0dbjbpgk7rc71nzby"; depends=[]; }; -synlik = derive { name="synlik"; version="0.1.1"; sha256="0g4n78amydihsq4jg2i9barjm9g40zczasb31fj10yn6wir1dhv7"; depends=[Rcpp Matrix Rcpp RcppArmadillo]; }; -synthpop = derive { name="synthpop"; version="1.1-0"; sha256="1j9d0jpmr8dva2c7gd6z1q0a3qdxkvmm83xlv08dxkbvsfbzvmmr"; depends=[lattice MASS nnet ggplot2 coefplot rpart party foreign plyr proto]; }; +synlik = derive { name="synlik"; version="0.1.1"; sha256="0g4n78amydihsq4jg2i9barjm9g40zczasb31fj10yn6wir1dhv7"; depends=[Matrix Rcpp RcppArmadillo]; }; +synthpop = derive { name="synthpop"; version="1.1-0"; sha256="1j9d0jpmr8dva2c7gd6z1q0a3qdxkvmm83xlv08dxkbvsfbzvmmr"; depends=[coefplot foreign ggplot2 lattice MASS nnet party plyr proto rpart]; }; sysfonts = derive { name="sysfonts"; version="0.5"; sha256="1vppj3jnag88351f8xfk9ds8gbbij3m55iq5rxbnrzy89c04zpzp"; depends=[]; }; -systemfit = derive { name="systemfit"; version="1.1-14"; sha256="0f33v96awyhxw3i6zr6whdz91hbfi7vwnfs0bz7xsrjcinqhm6h5"; depends=[Matrix car lmtest sandwich]; }; -systemicrisk = derive { name="systemicrisk"; version="0.2"; sha256="06061hca2x9hj0caann69j6x2jgy8bq40nxs27iqb3zfqp2cz44f"; depends=[Rcpp lpSolve Rcpp]; }; -syuzhet = derive { name="syuzhet"; version="0.2.0"; sha256="1l83wjiv1xsxw4wrcgcj3ryisi7zn4sbdl0sail0rhw0g9y9cz76"; depends=[openNLP NLP]; }; -taRifx = derive { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[reshape2 plyr]; }; -taRifx_geo = derive { name="taRifx.geo"; version="1.0.6"; sha256="0w7nwp3kvidqhwaxaiq267h99akkrj6xgkviwj0w01511m2lzghs"; depends=[taRifx sp rgdal RJSONIO rgeos RCurl]; }; -tab = derive { name="tab"; version="3.1.1"; sha256="05wypi4v9r2qlgwafd9f58vnxn2c4fnz18l8xpb24nhdgm35adqy"; depends=[survey survival gee]; }; +systemfit = derive { name="systemfit"; version="1.1-16"; sha256="0b34cpwhmsmq7dcr3gymdvanj3q493aczgz3af7b14bsp3bbwpw6"; depends=[car lmtest MASS Matrix sandwich]; }; +systemicrisk = derive { name="systemicrisk"; version="0.2"; sha256="06061hca2x9hj0caann69j6x2jgy8bq40nxs27iqb3zfqp2cz44f"; depends=[lpSolve Rcpp]; }; +syuzhet = derive { name="syuzhet"; version="0.2.0"; sha256="1l83wjiv1xsxw4wrcgcj3ryisi7zn4sbdl0sail0rhw0g9y9cz76"; depends=[NLP openNLP]; }; +taRifx = derive { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[plyr reshape2]; }; +taRifx_geo = derive { name="taRifx.geo"; version="1.0.6"; sha256="0w7nwp3kvidqhwaxaiq267h99akkrj6xgkviwj0w01511m2lzghs"; depends=[RCurl rgdal rgeos RJSONIO sp taRifx]; }; +tab = derive { name="tab"; version="3.1.1"; sha256="05wypi4v9r2qlgwafd9f58vnxn2c4fnz18l8xpb24nhdgm35adqy"; depends=[gee survey survival]; }; table1xls = derive { name="table1xls"; version="0.3.1"; sha256="0zd93wrdj4q0ph375qlgdhpqm3n8s941vks5h07ks9gc8id1bnx5"; depends=[XLConnect]; }; tableone = derive { name="tableone"; version="0.6.3"; sha256="0r91vzq3whz949kxg9q9bf413r41cxqsjvmicmb4najhwzhdr9fv"; depends=[e1071 gmodels]; }; tableplot = derive { name="tableplot"; version="0.3-5"; sha256="1jkkl2jw7lwm5zkx2yaiwnq1s3li81vidjkyl393g1aqm9jf129l"; depends=[]; }; tables = derive { name="tables"; version="0.7.79"; sha256="05f23y5ff961ksx4fnmwpf6zvc9573if8s2cmz9bwki66h2g9xb7"; depends=[Hmisc]; }; tabplot = derive { name="tabplot"; version="1.1"; sha256="0vyc6b6h540sqwhrza2ijg7ghw2x8rla827b8qy2sh0ckm0ybjrx"; depends=[ffbase]; }; -tabplotd3 = derive { name="tabplotd3"; version="0.3.3"; sha256="0mbj45vb17wlnndpkhvq7xaawsb814x7zxa4rqbfgidvbm1p3abv"; depends=[tabplot httpuv Rook brew RJSONIO]; }; +tabplotd3 = derive { name="tabplotd3"; version="0.3.3"; sha256="0mbj45vb17wlnndpkhvq7xaawsb814x7zxa4rqbfgidvbm1p3abv"; depends=[brew httpuv RJSONIO Rook tabplot]; }; tabuSearch = derive { name="tabuSearch"; version="1.1"; sha256="0bri03jksm314xy537dldbdvgyq6sywfmpmj2g2acdcli31kkpq0"; depends=[]; }; -tagcloud = derive { name="tagcloud"; version="0.5"; sha256="0d6h54p20pjnh1y7bw381nqbml1hv5x71gm33mgrzcib7mqa0c0b"; depends=[Rcpp RColorBrewer Rcpp]; }; +tagcloud = derive { name="tagcloud"; version="0.5"; sha256="0d6h54p20pjnh1y7bw381nqbml1hv5x71gm33mgrzcib7mqa0c0b"; depends=[RColorBrewer Rcpp]; }; tau = derive { name="tau"; version="0.0-18"; sha256="04rj3jrcz4h60dqm1xmnmpr52csz1s7rf2wv6ivybgyvbq0w2ijf"; depends=[]; }; -tawny = derive { name="tawny"; version="2.1.2"; sha256="0ihg3qlng8swak1dfpbnlx5xc45d1i9rgqawmqa97v5m91smfa71"; depends=[lambda_r lambda_tools futile_logger futile_matrix tawny_types zoo xts PerformanceAnalytics quantmod]; }; -tawny_types = derive { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdczjn5ymsp2fqq0ijnlniyf3bc08ibd8yd1jcdyjnj"; depends=[lambda_r lambda_tools futile_logger futile_options zoo xts quantmod]; }; -taxize = derive { name="taxize"; version="0.5.2"; sha256="1141ypz76nda9ij0fr63kgjagj9al63gnqwxa7ld7v9xzig8zgyp"; depends=[XML RCurl stringr plyr httr jsonlite foreach ape Taxonstand reshape2 data_table vegan bold]; }; -tbart = derive { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp Rcpp]; }; +tawny = derive { name="tawny"; version="2.1.2"; sha256="0ihg3qlng8swak1dfpbnlx5xc45d1i9rgqawmqa97v5m91smfa71"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; +tawny_types = derive { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdczjn5ymsp2fqq0ijnlniyf3bc08ibd8yd1jcdyjnj"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; }; +taxize = derive { name="taxize"; version="0.6.0"; sha256="0zxlawj79l117hj3d93663xdzbkcq5gh6m090yfbvkzrb6a4rq3f"; depends=[ape bold data_table foreach httr jsonlite plyr RCurl reshape2 stringr Taxonstand XML]; }; +tbart = derive { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbdiag = derive { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; -tcR = derive { name="tcR"; version="1.3"; sha256="09jvmnyq9j0l8ng73jr2ldb70fbqryd6jzjsxdyhdxvj2w83qcxa"; depends=[ggplot2 dplyr gridExtra reshape2 igraph Rcpp data_table gtable roxygen2 stringdist Rcpp]; }; +tcR = derive { name="tcR"; version="2.0"; sha256="05y3nbqdaxry7jwph6z2v8d2304xh791l0vviywyghrw7b2hqw9q"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 roxygen2 stringdist]; }; tcltk2 = derive { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; -tclust = derive { name="tclust"; version="1.2-3"; sha256="0a1b7yp4l9wf6ic5czizyl2cnxrc1virj0icr8i6m1vv23jd8jfp"; depends=[mvtnorm sn mclust cluster]; }; -tdm = derive { name="tdm"; version="3.0.3"; sha256="01xy090h9idw05jssfgdarbqp5d1vsiir5x7fr1ylaz0k8ai23d4"; depends=[rjags coda png deSolve]; }; -tdr = derive { name="tdr"; version="0.11"; sha256="1ga1lczqj5pka2yz7igxfm83xmkx7lla8pz6ryij0ybn284agszs"; depends=[lattice ggplot2 RColorBrewer]; }; +tclust = derive { name="tclust"; version="1.2-3"; sha256="0a1b7yp4l9wf6ic5czizyl2cnxrc1virj0icr8i6m1vv23jd8jfp"; depends=[cluster mclust mvtnorm sn]; }; +tdm = derive { name="tdm"; version="3.0.3"; sha256="01xy090h9idw05jssfgdarbqp5d1vsiir5x7fr1ylaz0k8ai23d4"; depends=[coda deSolve png rjags]; }; +tdr = derive { name="tdr"; version="0.11"; sha256="1ga1lczqj5pka2yz7igxfm83xmkx7lla8pz6ryij0ybn284agszs"; depends=[ggplot2 lattice RColorBrewer]; }; tdthap = derive { name="tdthap"; version="1.1-7"; sha256="0lqcw4bzjd995pwn2yrmzay82gnkxnmxxsqplpbn5gg8p6sf5qqk"; depends=[]; }; -teigen = derive { name="teigen"; version="2.0.8"; sha256="0gh5p2rwv1krrbq92wpgl1ya74vrdxhsagd7r7wvyxvxdv3j94v5"; depends=[]; }; +teigen = derive { name="teigen"; version="2.0.81"; sha256="1bssfn487dg1nc7fv73ksciiifnk1mvaqvp8a3gjmrb7bzfyzby7"; depends=[]; }; tempdisagg = derive { name="tempdisagg"; version="0.24.0"; sha256="02ld14mppyyqvgz537sypr3mqc758cchfcmpj46b7wswwa2y7fyz"; depends=[]; }; tensor = derive { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; tensorA = derive { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; }; -tergm = derive { name="tergm"; version="3.2.4"; sha256="0ndkgkb31bwdy78nw6nq4wfhgzibxsixx3ylsgcs5rv3y0w1pczw"; depends=[statnet_common ergm network networkDynamic robustbase coda nlme ergm]; }; -termstrc = derive { name="termstrc"; version="1.3.7"; sha256="12bycwhjrhkadafcckc30jr0md0ssj21n4v75yjhy21yvqjx1d7a"; depends=[lmtest Rcpp rgl sandwich urca zoo Rcpp]; }; -ternvis = derive { name="ternvis"; version="1.1"; sha256="16q1a1ns7q0d46js2m1hr6zm8msg3ncgp8w7yrwch11xq0759sb4"; depends=[quadprog maps maptools mapdata dichromat]; }; +tergm = derive { name="tergm"; version="3.3.0"; sha256="0dz4cjnsw2gw47jrxnhbbxmwkhq63vwkd5imvbiwvm9ysghrnwjw"; depends=[coda ergm network networkDynamic nlme robustbase statnet_common]; }; +termstrc = derive { name="termstrc"; version="1.3.7"; sha256="12bycwhjrhkadafcckc30jr0md0ssj21n4v75yjhy21yvqjx1d7a"; depends=[lmtest Rcpp rgl sandwich urca zoo]; }; +ternvis = derive { name="ternvis"; version="1.1"; sha256="16q1a1ns7q0d46js2m1hr6zm8msg3ncgp8w7yrwch11xq0759sb4"; depends=[dichromat mapdata maps maptools quadprog]; }; tester = derive { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testit = derive { name="testit"; version="0.4"; sha256="1805i82kb2g08r0cqdk6dhfhwqjjdigdm1rqf88sp7435wksyv8i"; depends=[]; }; -testthat = derive { name="testthat"; version="0.9.1"; sha256="0hbkyfx54fz4lwyz3azfxb6xkdcmm6kjdv6ma47gv947m90ysnfk"; depends=[digest]; }; +testthat = derive { name="testthat"; version="0.10.0"; sha256="0b3akwcx5mv9dmi8vssbk91hr3yrrdxd2fm6zhr31fnyz8kjx4pw"; depends=[crayon digest]; }; testthatsomemore = derive { name="testthatsomemore"; version="0.1"; sha256="0j9sszm4l0mn7nqz47li6fq5ycb3yawc2yrad9ngb75cvp47ikkk"; depends=[testthat]; }; texmex = derive { name="texmex"; version="2.1"; sha256="17x4xw2h4g9a10zk4mvi3jz3gf4rf81b29hg2g3gq6a6nrxsj8sy"; depends=[mvtnorm]; }; texmexseq = derive { name="texmexseq"; version="0.1"; sha256="18lpihiwpjkjkc1n7ka6rzasrwv8npn4939s1gl8g1jb27vnhzb5"; depends=[]; }; texreg = derive { name="texreg"; version="1.35"; sha256="0c1w6kzczzflcmvr544v3gdasvyjxcwqgdm2w2i9wp7kd1va37fr"; depends=[]; }; -textcat = derive { name="textcat"; version="1.0-2"; sha256="0sjhahmqva9pwp75zwxxf8g1cw38awid3w6rx9xfx73cpj2blcz3"; depends=[tau slam]; }; +textcat = derive { name="textcat"; version="1.0-3"; sha256="0j3sp94bz57l70aqm11033nfshxdz3l9m4sq1gsfzkvxgnlpqrm5"; depends=[slam tau]; }; textir = derive { name="textir"; version="2.0-3"; sha256="039xl2h0igrp3fzr1qiyb0zr6j4bbajhj36apylqvwsczzaywhwb"; depends=[distrom gamlr Matrix]; }; textometry = derive { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; -textreg = derive { name="textreg"; version="0.1.2"; sha256="0qya0czbi78a29jp9pd3lbqh574d9k0i340hrgc6jmdhwzhimhk7"; depends=[tm NLP Rcpp Rcpp]; }; +textreg = derive { name="textreg"; version="0.1.2"; sha256="0qya0czbi78a29jp9pd3lbqh574d9k0i340hrgc6jmdhwzhimhk7"; depends=[NLP Rcpp tm]; }; tfer = derive { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; }; tfplot = derive { name="tfplot"; version="2015.4-1"; sha256="1qrw8x7pz7xcmpym3j1d095bhvy2s7znxplml1qyw5minc67n1mh"; depends=[tframe]; }; tframe = derive { name="tframe"; version="2015.1-1"; sha256="10igwmrfslyz3z3cbyldik8fcxq43pwh60yggka6mkl0nzkxagbd"; depends=[]; }; tframePlus = derive { name="tframePlus"; version="2015.1-2"; sha256="043ay79x520lbh4jm2nb3331pwd7dvwfw20k1kc9cxbplxiy8pnb"; depends=[tframe timeSeries]; }; +tgcd = derive { name="tgcd"; version="1.4"; sha256="108i7kkfkpgavs8d2c6aih9winfqhin777jn5zfxzkjd6clj857i"; depends=[]; }; tgp = derive { name="tgp"; version="2.4-11"; sha256="0hdi05bz9qn4zmljfnll5hk9j8z9qaqmya77pdcgr6vc31ckixw5"; depends=[maptree]; }; tgram = derive { name="tgram"; version="0.2-2"; sha256="091g6j5ry1gmjff1kprk5vi2lirl8zbynqxkkywaqpifz302p39q"; depends=[zoo]; }; thermocouple = derive { name="thermocouple"; version="1.0.0"; sha256="1pawk7aq27vc708xwz997pmxxhipw8449793zv6fw5aj47wcw1l5"; depends=[]; }; thgenetics = derive { name="thgenetics"; version="0.3-4"; sha256="1316nx0s52y12j9499mvi050p3qvp6b8i01v82na01vidl54b9c2"; depends=[]; }; threeboost = derive { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; }; -threg = derive { name="threg"; version="1.0.2"; sha256="0wb9waj0j83zrj763d3fdnp3lp52gfdyzv23yrvxvd6zmk5clgi2"; depends=[survival Formula]; }; +threejs = derive { name="threejs"; version="0.2.1"; sha256="01zfv5lm11i2nkb876f3fg8vsff2wk271jqs6xw1njjdhbnnihs1"; depends=[base64enc htmlwidgets]; }; +threg = derive { name="threg"; version="1.0.2"; sha256="0wb9waj0j83zrj763d3fdnp3lp52gfdyzv23yrvxvd6zmk5clgi2"; depends=[Formula survival]; }; thsls = derive { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; tibbrConnector = derive { name="tibbrConnector"; version="1.5.0-71"; sha256="0d8gy126hzzardcwr9ydagdb0dy9bdw30l8s2wwi7zaxx2lpii6q"; depends=[RCurl rjson]; }; tictoc = derive { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; -tidyjson = derive { name="tidyjson"; version="0.2.1"; sha256="178lc4ii4vjzvrkxfdf5cd9ryxva9h2vv4wl6xgxgaixkab9yv9w"; depends=[assertthat jsonlite dplyr]; }; -tidyr = derive { name="tidyr"; version="0.2.0"; sha256="169i6xnr4bs5vqkv6dilj5j8v95giz0b7byhi06qk414gdlj2r8n"; depends=[reshape2 dplyr stringi lazyeval]; }; +tidyjson = derive { name="tidyjson"; version="0.2.1"; sha256="178lc4ii4vjzvrkxfdf5cd9ryxva9h2vv4wl6xgxgaixkab9yv9w"; depends=[assertthat dplyr jsonlite]; }; +tidyr = derive { name="tidyr"; version="0.2.0"; sha256="169i6xnr4bs5vqkv6dilj5j8v95giz0b7byhi06qk414gdlj2r8n"; depends=[dplyr lazyeval reshape2 stringi]; }; tiff = derive { name="tiff"; version="0.1-5"; sha256="0asf2bws3x3yd3g3ixvk0f86b0mdf882pl8xrqlxrkbgjalyc54m"; depends=[]; }; -tiger = derive { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin qualV klaR som lattice]; }; -tigerstats = derive { name="tigerstats"; version="0.2"; sha256="1wj4z1jj7jg3885nvfh4l812cyybjcm5r66w3l41s4c0civl4z5b"; depends=[mosaic mosaicData abd MASS ggplot2 lattice]; }; +tiger = derive { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; +tigerstats = derive { name="tigerstats"; version="0.2-6"; sha256="0niibqhqpjxgq3m7xp0icf98k531ncmm853scvqp5icv2yz5ivav"; depends=[abd ggplot2 lattice MASS mosaic mosaicData]; }; tightClust = derive { name="tightClust"; version="1.0"; sha256="0psyzk6d33qkql8v6hzkp8mfwb678r95vfycz2gh6fky7m5k3yyz"; depends=[]; }; tikzDevice = derive { name="tikzDevice"; version="0.8.1"; sha256="0262szfzv4yrfal19giinrphra1kfcm2arfckql4rf2zsq13rw35"; depends=[filehash]; }; tileHMM = derive { name="tileHMM"; version="1.0-6"; sha256="18vqj7fdh4knnjk9s7yk2bgn3qwqz92fmm5fdny21gi0wl4qgdsd"; depends=[]; }; timeDate = derive { name="timeDate"; version="3012.100"; sha256="0cn4h23y2y2bbg62qgm79xx4cvfla5xbpmi9hbdvkvpmm5yfyqk2"; depends=[]; }; -timeROC = derive { name="timeROC"; version="0.3"; sha256="0xl6gpb5ayppzp08wwry4i051rm40lzfx43jw2yn3jy2p3nrcakb"; depends=[pec mvtnorm]; }; -timeSeq = derive { name="timeSeq"; version="1.0.0"; sha256="1b7jcld1h3xsp3nl2nk9nqsgdg1pdi4m54hgsdlvivk9zzv3k6wr"; depends=[gss lattice pheatmap doParallel foreach reshape]; }; +timeROC = derive { name="timeROC"; version="0.3"; sha256="0xl6gpb5ayppzp08wwry4i051rm40lzfx43jw2yn3jy2p3nrcakb"; depends=[mvtnorm pec]; }; +timeSeq = derive { name="timeSeq"; version="1.0.0"; sha256="1b7jcld1h3xsp3nl2nk9nqsgdg1pdi4m54hgsdlvivk9zzv3k6wr"; depends=[doParallel edgeR foreach gss lattice pheatmap reshape]; }; timeSeries = derive { name="timeSeries"; version="3012.99"; sha256="06lz9xljzadfs94xwn8578h8mw56wp923k0xfppzq69hcpcrhsvf"; depends=[timeDate]; }; timeit = derive { name="timeit"; version="0.2.1"; sha256="0fsa67jyk4yizyd079265jg6fvjsifkb60y3fkkxsqm7ffqi6568"; depends=[microbenchmark]; }; timeline = derive { name="timeline"; version="0.9"; sha256="0zkanz3ac6cgsfl80sydgwnjrj9rm7pcfph7wzl3xkh4k0inyjq3"; depends=[ggplot2]; }; timeordered = derive { name="timeordered"; version="0.9.8"; sha256="1j0x2v22ybyl3l9r3aaz5a3bxh0zq81rbga9gh63zads2xy5axmf"; depends=[igraph plyr]; }; -timereg = derive { name="timereg"; version="1.8.7"; sha256="1xarqsdgl1zcc8ilg23g3p2xl3zbsfiak7lagvs5sbsq84b0wpr7"; depends=[survival lava numDeriv]; }; +timereg = derive { name="timereg"; version="1.8.9"; sha256="12l8sz10ic8d34jd7ik8szg2d51pr949nsss20c5l5g3kfnvqkkh"; depends=[lava numDeriv survival]; }; timesboot = derive { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; -timeseriesdb = derive { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[RPostgreSQL RJSONIO xts zoo reshape2 shiny DBI]; }; +timeseriesdb = derive { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; }; timetools = derive { name="timetools"; version="1.6.5"; sha256="1ni1dqzkdrzmvr0sbnfdh7kcsd5sgfggfl6w7nqviidcff5dbc9g"; depends=[]; }; -timetree = derive { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[XML phangorn]; }; -timma = derive { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[Rcpp QCA reshape2 Rcpp RcppArmadillo]; }; +timetree = derive { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; +timma = derive { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[QCA Rcpp RcppArmadillo reshape2]; }; timsac = derive { name="timsac"; version="1.3.3"; sha256="0jg9mjzzfl94z4dqb2kz0aiccpclnbyf9p08x3a3cw1y6wqmzrmy"; depends=[]; }; tipom = derive { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; -tis = derive { name="tis"; version="1.27"; sha256="1kgzc032qa005hzcimhbbhcs5kcvm88pfb48ac84k205f6xhdsir"; depends=[]; }; -titan = derive { name="titan"; version="1.0-16"; sha256="0x30a877vj99z3fh3cw9762j5ci56964j2466xfbwcywhn9njz5r"; depends=[MASS boot lattice]; }; +tis = derive { name="tis"; version="1.30"; sha256="0bqvnaxqqq4962wfw4s9rf0qil613mplqcjwjlq1s9yfxl78gzzw"; depends=[]; }; +titan = derive { name="titan"; version="1.0-16"; sha256="0x30a877vj99z3fh3cw9762j5ci56964j2466xfbwcywhn9njz5r"; depends=[boot lattice MASS]; }; tkrgl = derive { name="tkrgl"; version="0.7"; sha256="1kpq5p6izqrn1zr53firis3rmifq9lf6326lf3z7l1p82nf2yps5"; depends=[rgl]; }; tkrplot = derive { name="tkrplot"; version="0.0-23"; sha256="1cnyszn3rmr1kwvi5a178dr3074skdijfixf5ln8av5wwcy35947"; depends=[]; }; tlemix = derive { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; @@ -6370,44 +6524,45 @@ tlmec = derive { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7b tlnise = derive { name="tlnise"; version="2.0"; sha256="1vh998vqj359249n9zmw04rsivb7nlbdfgzf20pgh2sndm3rh8qz"; depends=[]; }; tm = derive { name="tm"; version="0.6-1"; sha256="0i32gwic6vi7fkw05vg3rk8lmszzmy6gm9f5hrj0xckx7sf1ilfq"; depends=[NLP slam]; }; tm_plugin_alceste = derive { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; }; -tm_plugin_dc = derive { name="tm.plugin.dc"; version="0.2-7"; sha256="1ikkxp5jdr385yqvhknvkvs97039jw964pcm6dl1k66nbdv1q59i"; depends=[DSL tm NLP slam]; }; +tm_plugin_dc = derive { name="tm.plugin.dc"; version="0.2-7"; sha256="1ikkxp5jdr385yqvhknvkvs97039jw964pcm6dl1k66nbdv1q59i"; depends=[DSL NLP slam tm]; }; tm_plugin_europresse = derive { name="tm.plugin.europresse"; version="1.2"; sha256="1sgm9wnzlphl4qhc69nj5im4y1qs6b0vssmn5j98fbc3xlxiyzjx"; depends=[NLP tm XML]; }; tm_plugin_factiva = derive { name="tm.plugin.factiva"; version="1.5"; sha256="06s75rwx9fzld1dw0nw6q5phc1h0zsdzhy1dcdcvmsf97d4s2qdr"; depends=[NLP tm XML]; }; -tm_plugin_lexisnexis = derive { name="tm.plugin.lexisnexis"; version="1.2"; sha256="0cjw705czzzhd8ybfxkrv0f9kvmv9pcswisc7n9hkx8lxi942h19"; depends=[NLP tm XML ISOcodes]; }; +tm_plugin_lexisnexis = derive { name="tm.plugin.lexisnexis"; version="1.2"; sha256="0cjw705czzzhd8ybfxkrv0f9kvmv9pcswisc7n9hkx8lxi942h19"; depends=[ISOcodes NLP tm XML]; }; tm_plugin_mail = derive { name="tm.plugin.mail"; version="0.1"; sha256="0ca2w2p5zv3qr4zi0cj3lfz36g6xkgkbck8pdxq5k65kqi5ndzyp"; depends=[NLP tm]; }; -tm_plugin_webmining = derive { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[NLP tm boilerpipeR RCurl XML RJSONIO]; }; -tmap = derive { name="tmap"; version="0.7"; sha256="0lnlnnllj2bypw2cf8pgpv40w5zy4876kmjgav07ls8j11lklgwz"; depends=[rgeos gridBase sp rgdal classInt RColorBrewer igraph fields vegan]; }; -tmg = derive { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp Rcpp RcppEigen]; }; +tm_plugin_webmining = derive { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; }; +tmap = derive { name="tmap"; version="1.0"; sha256="1807zh2yjgcpjrl1g83ahby7857l7hd5k9shrb1v6vkv6x5rrrkm"; depends=[classInt gridBase raster RColorBrewer rgdal rgeos sp]; }; +tmg = derive { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp RcppEigen]; }; tmle = derive { name="tmle"; version="1.2.0-4"; sha256="11hjp2vak1zv73326yzzv99wg8a2xyvfgvbyvx3jfxkgk33mybbm"; depends=[SuperLearner]; }; -tmle_npvi = derive { name="tmle.npvi"; version="0.9.3"; sha256="0njrjwjjn853iahccg37dns7pm14qr05xbkqnd1rhzg4lcl34fyb"; depends=[R_utils R_methodsS3 R_oo MASS Matrix sgeostat geometry]; }; -tmvtnorm = derive { name="tmvtnorm"; version="1.4-9"; sha256="1dacdhqv6bb29a81bmxp8hxy4hragpg8mb5kql4cp59q08zmizyi"; depends=[mvtnorm Matrix gmm]; }; +tmle_npvi = derive { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; }; +tmvtnorm = derive { name="tmvtnorm"; version="1.4-9"; sha256="1dacdhqv6bb29a81bmxp8hxy4hragpg8mb5kql4cp59q08zmizyi"; depends=[gmm Matrix mvtnorm]; }; tnet = derive { name="tnet"; version="3.0.11"; sha256="00hifb145w0a9f5qi3gx16lm1qg621jp523vswb8h86jqmxcczbc"; depends=[igraph survival]; }; toOrdinal = derive { name="toOrdinal"; version="0.0-1"; sha256="1rr6liw0krzdarc9gd406mf242n3hl38bn52xphr1g0riq5y2m4q"; depends=[]; }; tolerance = derive { name="tolerance"; version="1.1.0"; sha256="1mrgvrdlawrmbz8bhq9cxqgn4fxvn18f1gjf9f9s8fvfnc4nda96"; depends=[rgl]; }; topicmodels = derive { name="topicmodels"; version="0.2-1"; sha256="1if1pdx4jnfx3xi37xs411qv3h449vkwxzzqd7krxaxbj3gqq7n9"; depends=[modeltools slam tm]; }; topmodel = derive { name="topmodel"; version="0.7.2-2"; sha256="1nqa8fnpxcn373v6qcd9ma8qzcqwl2md347yql3c8bpqlm9ggz16"; depends=[]; }; -topologyGSA = derive { name="topologyGSA"; version="1.4.4"; sha256="092f57gpm8jlb2y4j74a6dx1lwqjdgcm3yrm1yzy4511j6vg0axh"; depends=[gRbase fields]; }; +topologyGSA = derive { name="topologyGSA"; version="1.4.4"; sha256="092f57gpm8jlb2y4j74a6dx1lwqjdgcm3yrm1yzy4511j6vg0axh"; depends=[fields graph gRbase qpgraph]; }; topsis = derive { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tosls = derive { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; tourr = derive { name="tourr"; version="0.5.4"; sha256="11xg5slvx7rgyzrc0lzandw7vr7wzk3w2pplsnyrqq3d990qp40d"; depends=[]; }; -tourrGui = derive { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[tourr colorspace RGtk2 gWidgets Cairo]; }; +tourrGui = derive { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[Cairo colorspace gWidgets RGtk2 tourr]; }; toxtestD = derive { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; tpe = derive { name="tpe"; version="1.0.1"; sha256="0zsa8vb4qmln3sb4lplv43lh50yys9vfd3rxfp6qxqqjxivd0xsh"; depends=[]; }; tpr = derive { name="tpr"; version="0.3-1"; sha256="0nxl0m39zaii6rwm35hxcdk6iy2f729jjmhc2cpr8h0mgvgqf19d"; depends=[lgtdl]; }; track = derive { name="track"; version="1.1.8"; sha256="0scrww0ba1lrv39fh416wcbzblxnd9f7lp2w24hyp0zbbf1nxs68"; depends=[]; }; tractor_base = derive { name="tractor.base"; version="2.5.0"; sha256="17s4iyp67w7m8gslm87p3ic5r9iq7x1ifpxqrmnin3y5a3d04f5v"; depends=[reportr]; }; -traitr = derive { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest proto gWidgets]; }; -traj = derive { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster psych pastecs NbClust GPArotation]; }; -trajectories = derive { name="trajectories"; version="0.1-2"; sha256="1d27mb5xy29j2mgb0wh5x61q1z41vjmpidzqswqmw8fbq9g64826"; depends=[lattice sp spacetime rgdal rgeos]; }; -translate = derive { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[RCurl RJSONIO functional lisp]; }; -translateR = derive { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[RJSONIO RCurl textcat httr]; }; +traitr = derive { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest gWidgets proto]; }; +traits = derive { name="traits"; version="0.1.0"; sha256="0xn4jznf4fvm7d6yinyw8viik9gdnfskcgavwdb7r9als4qxqs58"; depends=[data_table dplyr httr jsonlite taxize XML]; }; +traj = derive { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; +trajectories = derive { name="trajectories"; version="0.1-3"; sha256="1lk2mxfsf8x8idhb4dcj9lqvkjwm2yarvjid42xr2a9wwylvz9vq"; depends=[lattice sp spacetime]; }; +translate = derive { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; +translateR = derive { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; transport = derive { name="transport"; version="0.6-3"; sha256="1sldlccsprzan1liyslzp9wzz3d36khyr6zri773npvnss9pa67w"; depends=[]; }; trapezoid = derive { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; }; treatSens = derive { name="treatSens"; version="1.1"; sha256="1h49idgv3rsday8xdj3rfqflj42ya9i5sg7cm1026arff1yqxxz8"; depends=[]; }; tree = derive { name="tree"; version="1.0-35"; sha256="1cxn73rlr8s3qbq3icdh1v3jbbz913ns6xk6yzgk30ncifw4iq6g"; depends=[]; }; -treeClust = derive { name="treeClust"; version="1.0-0"; sha256="1xn6m031vx12wcyyh04yb68cw416a6v5wd8rcp5f9jqirv1hp4xb"; depends=[rpart cluster]; }; -treebase = derive { name="treebase"; version="0.0-7.1"; sha256="0kj1cyk14j4qzm31f47a8g7qh4842rqkzr0fqh9i5c8kzrqxbc0g"; depends=[ape XML RCurl reshape2 data_table]; }; -treeclim = derive { name="treeclim"; version="1.0.11"; sha256="09i7zxwdrbfgridxsm20r554nyvwp40ngc47isy16a7f1q3rwjah"; depends=[Rcpp abind plyr ggplot2 lmtest lmodel2 np boot Rcpp RcppArmadillo]; }; +treeClust = derive { name="treeClust"; version="1.0-0"; sha256="1xn6m031vx12wcyyh04yb68cw416a6v5wd8rcp5f9jqirv1hp4xb"; depends=[cluster rpart]; }; +treebase = derive { name="treebase"; version="0.1.1"; sha256="00xjmvnfh8f05w0076f5rlqa6w5yw0xiqpk076j3ixsv8z6m10hy"; depends=[ape data_table RCurl reshape2 XML]; }; +treeclim = derive { name="treeclim"; version="1.0.11"; sha256="09i7zxwdrbfgridxsm20r554nyvwp40ngc47isy16a7f1q3rwjah"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; treecm = derive { name="treecm"; version="1.2.1"; sha256="02al6iz25pay7y1qmbpy04nw8dj9c5r7km6q5k3v3jdkfal6cm6k"; depends=[plyr]; }; treelet = derive { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; }; treemap = derive { name="treemap"; version="2.2"; sha256="0h4wkjw12n9awqsvrs72nmsxq3d5as3zjy8kyhw7715h1cvry769"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; @@ -6416,22 +6571,22 @@ treethresh = derive { name="treethresh"; version="0.1-8"; sha256="1xkbqlr9gkpw6a trend = derive { name="trend"; version="0.0.1"; sha256="05awwsqp8vm2p00dq2hkb7dglwf45djw2xx2q2mq33blrlhn31sw"; depends=[]; }; triangle = derive { name="triangle"; version="0.8"; sha256="0jdphz1rf4cx4y28syfffaz7fbl41g3rw3mrv9dywycdznhxdnrp"; depends=[]; }; trifield = derive { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdya0ihpkwnh20sgj3rc7fmzjil47kqscvy"; depends=[]; }; -trimTrees = derive { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[randomForest mlbench]; }; +trimTrees = derive { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; trimcluster = derive { name="trimcluster"; version="0.1-2"; sha256="0lsgbg93hm0w1rdb813ry0ks2l0jfpyqzqkf3h3bj6fch0avcbv2"; depends=[]; }; -trioGxE = derive { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[msm mgcv gtools]; }; -trip = derive { name="trip"; version="1.1-19"; sha256="1353lzfgvq8236ijxy8521r7hhmgyfrvc17ga8p8c0851nx53xn3"; depends=[sp maptools MASS spatstat]; }; +trioGxE = derive { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; }; +trip = derive { name="trip"; version="1.1-21"; sha256="0rawckw3xd8kz2jn6xgspgl5axabjcp4xh4kp93n3h41xlarv9xa"; depends=[maptools MASS raster sp spatstat]; }; tripEstimation = derive { name="tripEstimation"; version="0.0-42"; sha256="17spnvrrqv89vldd496wc1psmaby0mhw9nh0qnfm7yc2jcqaf5nb"; depends=[lattice mgcv rgdal sp zoo]; }; tripack = derive { name="tripack"; version="1.3-6"; sha256="1dknz1arzfyknip04a9fxdhqmrkb0r0lr8hgria9s0d57hr1ay12"; depends=[]; }; trotter = derive { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; trueskill = derive { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; }; -truncSP = derive { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[truncreg boot]; }; +truncSP = derive { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[boot truncreg]; }; truncdist = derive { name="truncdist"; version="1.0-1"; sha256="0aszs6rz8nydyf2dw1m4fj9fclb0r4vpgqywyaqjkdnhzmyn593g"; depends=[evd]; }; truncgof = derive { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; }; truncnorm = derive { name="truncnorm"; version="1.0-7"; sha256="1qac05z50618y4bw1d7yznsli1bv82s0g8h37iacrjrdkv87bmy7"; depends=[]; }; truncreg = derive { name="truncreg"; version="0.2-1"; sha256="0qvdfj93phk1s2p4n0rmpf8x9gj5n1j75h4z424mrg10r24699rd"; depends=[maxLik]; }; trust = derive { name="trust"; version="0.1-6"; sha256="1jghgwnazhqgyn2k0b3x4n8swncyy6dzlkv86chv98zw4s3bnlak"; depends=[]; }; -trustOptim = derive { name="trustOptim"; version="0.8.5"; sha256="1y9krw2z5skkwgfdjagl8l04l9sbiqbk1fbxp30wrf4qj3pba5w6"; depends=[Rcpp Matrix Rcpp RcppEigen]; }; -tsDyn = derive { name="tsDyn"; version="0.9-43"; sha256="0fhqfwhac1ac1vakwll41m54l88b1c5y34hln5i1y2ngvhy277l1"; depends=[mnormt mgcv nnet tseriesChaos tseries vars urca forecast MASS Matrix foreach]; }; +trustOptim = derive { name="trustOptim"; version="0.8.5"; sha256="1y9krw2z5skkwgfdjagl8l04l9sbiqbk1fbxp30wrf4qj3pba5w6"; depends=[Matrix Rcpp RcppEigen]; }; +tsDyn = derive { name="tsDyn"; version="0.9-43"; sha256="0fhqfwhac1ac1vakwll41m54l88b1c5y34hln5i1y2ngvhy277l1"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; tsModel = derive { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; }; tsallisqexp = derive { name="tsallisqexp"; version="0.9-1"; sha256="0z4csd3ircpf5jync6h1snj1k2awkd0s6vj2k4ij6rvs8w3nf8nn"; depends=[]; }; tsbridge = derive { name="tsbridge"; version="1.1"; sha256="0mry3ia54cdfydpzm8asrq1ldj70gnpb5dqzj51w0jiyps2zlw6f"; depends=[mvtnorm tsbugs]; }; @@ -6440,29 +6595,29 @@ tsc = derive { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw tscount = derive { name="tscount"; version="1.0.0"; sha256="0n01biifzjfvnj3zhrn87qigf4l1kij2zfqf6876qz8rps1jz626"; depends=[ltsa]; }; tseries = derive { name="tseries"; version="0.10-34"; sha256="068mjgjcsvgpynkvga8lv430cg8zhlr9frj5yapsxni2vj534pqj"; depends=[quadprog zoo]; }; tseriesChaos = derive { name="tseriesChaos"; version="0.1-13"; sha256="0f2hycxyvcaj3s1lmva1qy46xr6qi43k8fvnm4md5qj8jp2zkazg"; depends=[deSolve]; }; -tsfa = derive { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[GPArotation dse EvalEst setRNG tframe tfplot]; }; +tsfa = derive { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; }; tsintermittent = derive { name="tsintermittent"; version="1.5"; sha256="1qziwdpxfc2v010bk2cnhkrajza0z7lrrsjg06m49msyk5bk62z1"; depends=[MAPA]; }; tslars = derive { name="tslars"; version="1.0"; sha256="0ylpn4jxmrck7hna3j420kw2yhsrklrq2664w85z30xij3zrrrci"; depends=[]; }; tsne = derive { name="tsne"; version="0.1-2"; sha256="12q5s79r2949zhm61byd4dbgw6sz3bmxzcwr8b0wlp8g1xg4bhy6"; depends=[]; }; -tsoutliers = derive { name="tsoutliers"; version="0.6"; sha256="1cyh56i7dsnclphi81fab6k8vkdqv8ing2zmpfsjq4gvq76p7piw"; depends=[forecast polynom stsm KFKSDS]; }; -tspmeta = derive { name="tspmeta"; version="1.1"; sha256="11kr5avf67v2cxy3k1yrpv9lcbmiprd0w43w7zvizhsij58h13vm"; depends=[ggplot2 TSP MASS BBmisc fpc vegan stringr splancs]; }; -ttScreening = derive { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[matrixStats corpcor MASS]; }; +tsoutliers = derive { name="tsoutliers"; version="0.6"; sha256="1cyh56i7dsnclphi81fab6k8vkdqv8ing2zmpfsjq4gvq76p7piw"; depends=[forecast KFKSDS polynom stsm]; }; +tspmeta = derive { name="tspmeta"; version="1.1"; sha256="11kr5avf67v2cxy3k1yrpv9lcbmiprd0w43w7zvizhsij58h13vm"; depends=[BBmisc fpc ggplot2 MASS splancs stringr TSP vegan]; }; +ttScreening = derive { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[corpcor limma MASS matrixStats sva]; }; tth = derive { name="tth"; version="4.3-2"; sha256="1gs8xjljklvs0pavvn9f59y09hw7x2da58a46b5x01g08i0j8h1d"; depends=[]; }; ttutils = derive { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; ttwa = derive { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; -tufterhandout = derive { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[rmarkdown knitr]; }; -tumblR = derive { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl stringr RJSONIO]; }; +tufterhandout = derive { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; +tumblR = derive { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; }; tuneR = derive { name="tuneR"; version="1.2.1"; sha256="1f6mdkfwfy6r62sbwq37sylvcji6f3mj9w13sgicxjn6swbszf57"; depends=[signal]; }; tuple = derive { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; -turboEM = derive { name="turboEM"; version="2014.8-1"; sha256="0g9nm1m542hslz8272n5qz6h59criyf71l2w218dvq34bcjcd3yy"; depends=[doParallel foreach numDeriv quantreg iterators]; }; +turboEM = derive { name="turboEM"; version="2014.8-1"; sha256="0g9nm1m542hslz8272n5qz6h59criyf71l2w218dvq34bcjcd3yy"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turfR = derive { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; }; turner = derive { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; -tvd = derive { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp Rcpp]; }; +tvd = derive { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; }; tvm = derive { name="tvm"; version="0.2"; sha256="1fwa37xnp3idal8v1xxlc9gr25595f644i7a3h8xpd0k086sp1dg"; depends=[ggplot2 reshape2]; }; -twang = derive { name="twang"; version="1.4-9.3"; sha256="06lgawzq3b2jg84rvg24582ndlk8qji4gcbvxz5acf302cvdnmji"; depends=[gbm survey xtable lattice latticeExtra]; }; +twang = derive { name="twang"; version="1.4-9.3"; sha256="06lgawzq3b2jg84rvg24582ndlk8qji4gcbvxz5acf302cvdnmji"; depends=[gbm lattice latticeExtra survey xtable]; }; tweedie = derive { name="tweedie"; version="2.2.1"; sha256="1fsi0qf901bvvwa8bb6qvp90fkx1svzswljlvw4zirdavy65w0iq"; depends=[]; }; twiddler = derive { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; }; -twitteR = derive { name="twitteR"; version="1.1.8"; sha256="1gzahkipzpgfc160sgxzzga7byncih4j30r303m788c9lxk5dbxv"; depends=[bit64 rjson DBI httr]; }; +twitteR = derive { name="twitteR"; version="1.1.8"; sha256="1gzahkipzpgfc160sgxzzga7byncih4j30r303m788c9lxk5dbxv"; depends=[bit64 DBI httr rjson]; }; twoStageGwasPower = derive { name="twoStageGwasPower"; version="0.99.0"; sha256="1xvy6v444v47i29aw54y29xiizkmryv8p3mjha93xr3xq9bx2mq7"; depends=[]; }; twostageTE = derive { name="twostageTE"; version="1.2"; sha256="05k9lvkailv06cah71p71hnx8in045nxz6waplsccznplhgqg5ar"; depends=[isotone]; }; txtplot = derive { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"; depends=[]; }; @@ -6477,70 +6632,70 @@ uniReg = derive { name="uniReg"; version="1.0"; sha256="1xl19dqnxxibgiiny9ysll2z uniftest = derive { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; uniqtag = derive { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; unittest = derive { name="unittest"; version="1.2-0"; sha256="1g3f36kikxrzsiyhwpl73q2si5k28drcwvvrqzsqmfyhbjb14555"; depends=[]; }; -unmarked = derive { name="unmarked"; version="0.10-6"; sha256="07mw9rg4i81fqdkgkpcb7kd7235hn4nyxpbf5b8vxzsly81ffpz7"; depends=[reshape lattice Rcpp plyr Rcpp RcppArmadillo]; }; +unmarked = derive { name="unmarked"; version="0.10-6"; sha256="07mw9rg4i81fqdkgkpcb7kd7235hn4nyxpbf5b8vxzsly81ffpz7"; depends=[lattice plyr Rcpp RcppArmadillo reshape]; }; untb = derive { name="untb"; version="1.7-2"; sha256="1ha0xj94sz1r325qb4sb5hla9hw1gbqr76703vk792x9696skhji"; depends=[Brobdingnag partitions polynom]; }; upclass = derive { name="upclass"; version="2.0"; sha256="0jkxn6jgglw6pzzbcvi1pnq4hwfach3xbi13zwml4i83s3n5b0vg"; depends=[mclust]; }; -uplift = derive { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[RItools MASS coin tables penalized]; }; +uplift = derive { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; urca = derive { name="urca"; version="1.2-8"; sha256="0gyjb99m6w6h701vmsav16jpfl5276vlyaagizax8k20ns9ddl4b"; depends=[nlme]; }; -urltools = derive { name="urltools"; version="1.1.0"; sha256="0l0fqc1zvn8ps1cxxnpglbyfdwibyxaj3c2ivz8js8vphcr5i9zp"; depends=[Rcpp Rcpp]; }; +urltools = derive { name="urltools"; version="1.1.0"; sha256="0l0fqc1zvn8ps1cxxnpglbyfdwibyxaj3c2ivz8js8vphcr5i9zp"; depends=[Rcpp]; }; usdm = derive { name="usdm"; version="1.1-12"; sha256="0padc9ppfisnjg1nzw5csv2zki6dby7487lis8pixf1hhbinsnci"; depends=[raster]; }; useful = derive { name="useful"; version="1.1.8"; sha256="1lzl7rr9qxqa0ga6ml7qi7wi02fd4isgpfskvi3igy10iw1zv3hb"; depends=[ggplot2 plyr scales]; }; -userfriendlyscience = derive { name="userfriendlyscience"; version="0.3-0"; sha256="0gz59n315dbjlyh6fdqihr1x458wplnd43q2gw9s6f9b55359m2c"; depends=[ggplot2 plyr psych pwr fBasics ltm MBESS SuppDists GPArotation MASS mosaic foreign car knitr xtable GGally lavaan]; }; -uskewFactors = derive { name="uskewFactors"; version="1.0"; sha256="1ixcxqw8ai77ndn1cfkq53a090fgs95yzvas1qg2siwpfsm4yix6"; depends=[tmvtnorm mvtnorm MCMCpack MASS]; }; +userfriendlyscience = derive { name="userfriendlyscience"; version="0.3-0"; sha256="0gz59n315dbjlyh6fdqihr1x458wplnd43q2gw9s6f9b55359m2c"; depends=[car fBasics foreign GGally ggplot2 GPArotation knitr lavaan ltm MASS MBESS mosaic plyr psych pwr SuppDists xtable]; }; +uskewFactors = derive { name="uskewFactors"; version="1.0"; sha256="1ixcxqw8ai77ndn1cfkq53a090fgs95yzvas1qg2siwpfsm4yix6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive { name="usl"; version="1.4.1"; sha256="0z3dvxczp2vp4clnwds34w5rgv4la5hpadbcmdkfqcpdy1vjryv5"; depends=[nlmrt]; }; -ustyc = derive { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[XML plyr]; }; +ustyc = derive { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utility = derive { name="utility"; version="1.3"; sha256="0ng7jc45k9rgj9055ndmgl308zjvxd2cjsk2pn57x44rl1lldcj5"; depends=[]; }; uuid = derive { name="uuid"; version="0.1-1"; sha256="1b35h2n86233zb6dwkgxxlvnlld8kmv0j6j3m31xjbpmc3ppr7w3"; depends=[]; }; vacem = derive { name="vacem"; version="0.1-1"; sha256="0lh32hj4g1hsa45v6pmfyj1hw0klk8gr1k451lvs4hzpkkcwkqbn"; depends=[foreach]; }; -varComp = derive { name="varComp"; version="0.1-360"; sha256="18xazjx102j6v1jgswxjdqjb0hq6hd646yhwb7bcplqyls9hzha0"; depends=[quadprog Matrix MASS CompQuadForm RLRsim SPA3G mvtnorm nlme]; }; +varComp = derive { name="varComp"; version="0.1-360"; sha256="18xazjx102j6v1jgswxjdqjb0hq6hd646yhwb7bcplqyls9hzha0"; depends=[CompQuadForm MASS Matrix mvtnorm nlme quadprog RLRsim SPA3G]; }; varSelRF = derive { name="varSelRF"; version="0.7-5"; sha256="1800d9vvkqpxjvmiqdr610hw7ji79j0wsbl823s097dndmv51axk"; depends=[randomForest]; }; varSelectIP = derive { name="varSelectIP"; version="0.2-1"; sha256="180lzsg48hnlcmhpk0a5yzmy2syw8yr7f5npnyspx3897hjag1vp"; depends=[MASS mvtnorm]; }; varbvs = derive { name="varbvs"; version="1.0"; sha256="0ywgb6ibijffjjzqqb5lvh1lk5qznwwiq7kbsyzkwcxbp8xkabjw"; depends=[]; }; vardiag = derive { name="vardiag"; version="0.2-0"; sha256="0avj900zx4nr67dk08n0n6arxx2cb2ymm0kd5xxnzsmyrmwm40mm"; depends=[]; }; -vardpoor = derive { name="vardpoor"; version="0.3.0"; sha256="0gdvnz86c96i90zvbp5a6ljq4pcnx2zcqb0rbhcqhylcyqys054w"; depends=[data_table laeken stringr reshape2 foreach plyr gdata MASS]; }; -vars = derive { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[MASS strucchange urca lmtest sandwich]; }; +vardpoor = derive { name="vardpoor"; version="0.3.2"; sha256="0vb684yhvafdmzphx4vv8gqih10x3mj8vmwshppwfgd3jp76dnps"; depends=[data_table foreach gdata laeken MASS plyr reshape2 stringr]; }; +vars = derive { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[lmtest MASS sandwich strucchange urca]; }; vartors = derive { name="vartors"; version="0.2.6"; sha256="04dynqs903clllk9nyynh3dr7msxn5rr5jmw6ql86ppd5w3da0rl"; depends=[]; }; vbdm = derive { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; }; vbsr = derive { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; -vcd = derive { name="vcd"; version="1.3-2"; sha256="1ww69sgg178aqcs90mm599nlr6hnxn54d2wzyhddgx1z3qxhzwjd"; depends=[MASS colorspace]; }; -vcdExtra = derive { name="vcdExtra"; version="0.6-8"; sha256="00nxvq5fn5il3lmip8ag22cqc2sxlbl1rqw5zxp309wp4nrm5i2v"; depends=[vcd gnm MASS]; }; -vcrpart = derive { name="vcrpart"; version="0.3-3"; sha256="0rnf9cwynfwr956hwj4kxqiqq3cdw4wf5ia73s7adxixh5kpqxqa"; depends=[partykit nlme rpart numDeriv ucminf zoo sandwich strucchange]; }; -vdg = derive { name="vdg"; version="1.1"; sha256="08bl7835m5c62lgaghgnd80zlbic6i80sjfxdr39a715bxpr8g3b"; depends=[ggplot2 quantreg proxy gridExtra]; }; -vdmR = derive { name="vdmR"; version="0.1.0"; sha256="0rv9c6bn711dn1fhgmr4ig0lr9s6yjk7r5ccvyiadgn6g5mr2bds"; depends=[ggplot2 plyr maptools gridSVG rjson GGally Rook dplyr]; }; +vcd = derive { name="vcd"; version="1.4-0"; sha256="0gp137hlkg1wm8bhfdpswz0g05a4biprfa5r9i1fz5w0myqgpxca"; depends=[colorspace lmtest MASS]; }; +vcdExtra = derive { name="vcdExtra"; version="0.6-8"; sha256="00nxvq5fn5il3lmip8ag22cqc2sxlbl1rqw5zxp309wp4nrm5i2v"; depends=[gnm MASS vcd]; }; +vcrpart = derive { name="vcrpart"; version="0.3-3"; sha256="0rnf9cwynfwr956hwj4kxqiqq3cdw4wf5ia73s7adxixh5kpqxqa"; depends=[nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; +vdg = derive { name="vdg"; version="1.1"; sha256="08bl7835m5c62lgaghgnd80zlbic6i80sjfxdr39a715bxpr8g3b"; depends=[ggplot2 gridExtra proxy quantreg]; }; +vdmR = derive { name="vdmR"; version="0.1.1"; sha256="0hmn7xgi1dzril6jdwxkpxp8isin0kxn3yb5fmcyfjhf03kcv4d4"; depends=[dplyr GGally ggplot2 gridSVG maptools plyr rjson Rook]; }; vec2dtransf = derive { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; vecsets = derive { name="vecsets"; version="1.1"; sha256="0k27g3frc9y9z2qlm19kfpls6wl0422dilhdlk6096f1fp3mc6ij"; depends=[]; }; -vectoptim = derive { name="vectoptim"; version="0.2"; sha256="1n19sipx5r0qy08jmrbsrf0kgwgl31np88wc1zyc2bkx8h1zkmf2"; depends=[foreach doParallel]; }; -vegan = derive { name="vegan"; version="2.2-1"; sha256="06rq9qrcf180isjrczscl84m3jvygz5w2gz5nc4rm1pg89rf6lrd"; depends=[permute lattice MASS cluster mgcv]; }; -vegan3d = derive { name="vegan3d"; version="0.65-0"; sha256="0c75hybhwqv56f2zpskr99rr9k6hw6rbv29bcxn0fciw5jqk01m3"; depends=[vegan rgl scatterplot3d]; }; -vegclust = derive { name="vegclust"; version="1.6.3"; sha256="0l6j4sgzfqvcypx2dszpnsd1sivk33pixlgf9abqifp45skpkwfg"; depends=[vegan sp]; }; +vectoptim = derive { name="vectoptim"; version="0.2"; sha256="1n19sipx5r0qy08jmrbsrf0kgwgl31np88wc1zyc2bkx8h1zkmf2"; depends=[doParallel foreach]; }; +vegan = derive { name="vegan"; version="2.3-0"; sha256="1zlz2zq0818735db4l8gfwwxxd5dc0xnx6v8cq6mfclkw1qhcdpx"; depends=[cluster lattice MASS mgcv permute]; }; +vegan3d = derive { name="vegan3d"; version="0.65-1"; sha256="03rzv7l2jjrahj3492ysalyizkv24by35nrhd1bnlb1s88sav7sr"; depends=[rgl scatterplot3d vegan]; }; +vegclust = derive { name="vegclust"; version="1.6.3"; sha256="0l6j4sgzfqvcypx2dszpnsd1sivk33pixlgf9abqifp45skpkwfg"; depends=[sp vegan]; }; vegdata = derive { name="vegdata"; version="0.6.9"; sha256="1a8b8wwsxq8090cj8pxw1digllmc2rnby8immjfmbi5rzjbksgi3"; depends=[foreign XML]; }; vegetarian = derive { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; venneuler = derive { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; -verification = derive { name="verification"; version="1.41"; sha256="1c8l0kqk02xijr4yhgpmhlqsflm3wizybkwpzmlnfanh8vzn49g2"; depends=[fields boot CircStats MASS dtw]; }; -vetools = derive { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[sp stringr tis lubridate maptools plyr xts scales]; }; -vines = derive { name="vines"; version="1.1.3"; sha256="1m862kgcwfz2af00p3vqg959dfldw88bdmb7p4zr3jnqzb6l7rnk"; depends=[copula ADGofTest cubature TSP]; }; +verification = derive { name="verification"; version="1.41"; sha256="1c8l0kqk02xijr4yhgpmhlqsflm3wizybkwpzmlnfanh8vzn49g2"; depends=[boot CircStats dtw fields MASS]; }; +vetools = derive { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; +vines = derive { name="vines"; version="1.1.3"; sha256="1m862kgcwfz2af00p3vqg959dfldw88bdmb7p4zr3jnqzb6l7rnk"; depends=[ADGofTest copula cubature TSP]; }; violinmplot = derive { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; vioplot = derive { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; }; viopoints = derive { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; -virtualspecies = derive { name="virtualspecies"; version="1.0"; sha256="1qg5106ja17nsqzjnyswjf438f55195l197pizkybb2ilg4fw0x1"; depends=[raster ade4 dismo rworldmap]; }; +virtualspecies = derive { name="virtualspecies"; version="1.1"; sha256="0znrb6xqyzddd1r999rhx6ix6wgpj1laf5bcns7zgmq6zb39j74s"; depends=[ade4 dismo raster rworldmap]; }; visreg = derive { name="visreg"; version="2.2-0"; sha256="1hnyrfgyk5fign5l35aql2q7q4mmw3jby5pkv696h8k1mc8qq096"; depends=[lattice]; }; -visualFields = derive { name="visualFields"; version="0.4.2"; sha256="14plg94g4znl8n6798na2rivjjamjgayqkk1qwn1nx5df040l4q5"; depends=[gridBase flip matrixStats Hmisc]; }; +visualFields = derive { name="visualFields"; version="0.4.2"; sha256="14plg94g4znl8n6798na2rivjjamjgayqkk1qwn1nx5df040l4q5"; depends=[flip gridBase Hmisc matrixStats]; }; visualize = derive { name="visualize"; version="4.2"; sha256="1jgk7j0f3p72wbqnmplrgpy7hlh7k2cmvx83gr2zfnbhygdi22mk"; depends=[]; }; vitality = derive { name="vitality"; version="1.1"; sha256="048i6ralh3gbh3hqkdxj3sdkxp1nrjbp3jpwrva4sa8d69vwxla5"; depends=[IMIS]; }; -vmsbase = derive { name="vmsbase"; version="2.0"; sha256="04j6zibwcn1ywckbdqw5p6da5qpgpll7a96x5a1kyimiwk408j1r"; depends=[sqldf ggmap mapdata maps marmap intervals plotrix sp foreign cluster cairoDevice ggplot2 DBI RSQLite fields gsubfn AMORE ecodist gWidgets gWidgetsRGtk2 chron maptools outliers PBSmapping R6 VennDiagram gmt]; }; +vmsbase = derive { name="vmsbase"; version="2.0"; sha256="04j6zibwcn1ywckbdqw5p6da5qpgpll7a96x5a1kyimiwk408j1r"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets gWidgetsRGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; vowels = derive { name="vowels"; version="1.2-1"; sha256="0177xysb5y8jzpxn9wdygq2f74gys67g29cd12zw77vlq3c3kkbr"; depends=[]; }; -vows = derive { name="vows"; version="0.4"; sha256="0cc0znrnzhfgp47dsyncjh7b072mbwk568n2pshxwdfxzh3kj65q"; depends=[fda gamm4 rpanel mgcv RLRsim oro_nifti shape stringr]; }; +vows = derive { name="vows"; version="0.4"; sha256="0cc0znrnzhfgp47dsyncjh7b072mbwk568n2pshxwdfxzh3kj65q"; depends=[fda gamm4 mgcv oro_nifti RLRsim rpanel shape stringr]; }; vrmlgen = derive { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; vrtest = derive { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; -vscc = derive { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[teigen mclust]; }; +vscc = derive { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; vudc = derive { name="vudc"; version="1.0"; sha256="1xjbjfya4zn94arc76pcfflc2dcn40qj1fkzwnzqz70czc2msppw"; depends=[]; }; -vwr = derive { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[stringdist lattice latticeExtra]; }; +vwr = derive { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wSVM = derive { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; }; -waffect = derive { name="waffect"; version="1.2"; sha256="0r5dvm0ggyxyv81hxdr1an658wkqkhqq2xaqzqpnh4sh4wbak35a"; depends=[Rcpp Rcpp]; }; -waffle = derive { name="waffle"; version="0.3.1"; sha256="0z6snwf29n1p1i4zc3hx95yq388jgw8v3mcmjhsa2w95zsz9dxr0"; depends=[ggplot2 RColorBrewer gridExtra gtable]; }; +waffect = derive { name="waffect"; version="1.2"; sha256="0r5dvm0ggyxyv81hxdr1an658wkqkhqq2xaqzqpnh4sh4wbak35a"; depends=[Rcpp]; }; +waffle = derive { name="waffle"; version="0.3.1"; sha256="0z6snwf29n1p1i4zc3hx95yq388jgw8v3mcmjhsa2w95zsz9dxr0"; depends=[ggplot2 gridExtra gtable RColorBrewer]; }; wahc = derive { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; }; walkscoreAPI = derive { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; -wasim = derive { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[MASS qualV tiger fast]; }; +wasim = derive { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; }; waterData = derive { name="waterData"; version="1.0.4"; sha256="0wk49f079jfbjncyirdvq50wswf9g361iivshjfhyndv83gbqrzk"; depends=[lattice latticeExtra XML]; }; waterfall = derive { name="waterfall"; version="0.9.9.20121030"; sha256="140s5639ayd9qgn4i1s1qk541vi34ndzdcqpaps7q53g42n8akfw"; depends=[lattice]; }; waveband = derive { name="waveband"; version="4.6"; sha256="1y2qi2zb8l2ap6f8ihnpq2yavic464bl5mp5yv1dscbk0nmfn966"; depends=[wavethresh]; }; @@ -6551,82 +6706,84 @@ waveslim = derive { name="waveslim"; version="1.7.5"; sha256="0lqslkihgrd7rbihqh wavethresh = derive { name="wavethresh"; version="4.6.6"; sha256="1ykhfw1bdibvq2b3rrgqszvwqmzkd3fgxqg7p36ms1cxph68g2r9"; depends=[MASS]; }; wbs = derive { name="wbs"; version="1.3"; sha256="1fdf3dj23n63nfnzafq88sxqvi15cbrzsvc8wrljw1raq5z012yv"; depends=[]; }; weatherData = derive { name="weatherData"; version="0.4.1"; sha256="19ynb9w52ay15awaf4bqm9lj2w6pk70lyaipn46jrspwxqsvfhlc"; depends=[plyr]; }; -webchem = derive { name="webchem"; version="0.0.1"; sha256="0hfsjaffxz78mxxh2wx5api2blnpg5y16lyc0jf1zmq7zkhccx3l"; depends=[XML RCurl RJSONIO]; }; +webchem = derive { name="webchem"; version="0.0.1"; sha256="0hfsjaffxz78mxxh2wx5api2blnpg5y16lyc0jf1zmq7zkhccx3l"; depends=[RCurl RJSONIO XML]; }; webutils = derive { name="webutils"; version="0.3"; sha256="1wzpwigc5mmdnz453qr4s1viaslgdrcg238n25qcg4xjakmnxrss"; depends=[jsonlite]; }; webvis = derive { name="webvis"; version="0.0.2"; sha256="1cdn9jrpg2sbx4dsj0xf7m0daqr7fqiw3xy1lg0i0qn9cpvi348f"; depends=[]; }; -weightedKmeans = derive { name="weightedKmeans"; version="1.2.0"; sha256="140cvl1jwwqyvcsf7pbsxh9k4bynd7c1q159pp7ia1f1sgimxafb"; depends=[lattice latticeExtra clv]; }; +weightedKmeans = derive { name="weightedKmeans"; version="1.2.0"; sha256="140cvl1jwwqyvcsf7pbsxh9k4bynd7c1q159pp7ia1f1sgimxafb"; depends=[clv lattice latticeExtra]; }; weightedScores = derive { name="weightedScores"; version="0.9.1"; sha256="0wd2ymxy8yh3l4xd3xgifbihi89h53wy6n84x7x26px12c70q8fa"; depends=[mvtnorm rootSolve]; }; -weights = derive { name="weights"; version="0.80"; sha256="147fgs99sg1agq081ikj2fhb4b2vzsppdg1h1w036bb92vsjb0g5"; depends=[Hmisc gdata]; }; +weights = derive { name="weights"; version="0.80"; sha256="147fgs99sg1agq081ikj2fhb4b2vzsppdg1h1w036bb92vsjb0g5"; depends=[gdata Hmisc]; }; weirs = derive { name="weirs"; version="0.24"; sha256="15iffimdr01m92wq6srb49vf900c3cbipj99sk7rxbqbdzbb0y6g"; depends=[]; }; wesanderson = derive { name="wesanderson"; version="0.3.2"; sha256="17acf9ydi2sw7q887ni9ly12mdmip66ix6gdkh68rncj8sx3csrd"; depends=[]; }; -wfe = derive { name="wfe"; version="1.3"; sha256="16b39i60x10kw6yz44ff19h638s9lsgnz8azc76zl9b8s64jliya"; depends=[arm Matrix MASS]; }; -wgaim = derive { name="wgaim"; version="1.4-8"; sha256="1x1dgxw1viswdqd1k1gfbpipzhgy13lhncji0wlsgpcgfa40ap1a"; depends=[qtl lattice]; }; -wgsea = derive { name="wgsea"; version="1.8"; sha256="1114wik011sm2n12bwm2bhqvdxagbhbscif45k4pgxdkahy2abpi"; depends=[]; }; +wfe = derive { name="wfe"; version="1.3"; sha256="16b39i60x10kw6yz44ff19h638s9lsgnz8azc76zl9b8s64jliya"; depends=[arm MASS Matrix]; }; +wgaim = derive { name="wgaim"; version="1.4-8"; sha256="1x1dgxw1viswdqd1k1gfbpipzhgy13lhncji0wlsgpcgfa40ap1a"; depends=[lattice qtl]; }; +wgsea = derive { name="wgsea"; version="1.8"; sha256="1114wik011sm2n12bwm2bhqvdxagbhbscif45k4pgxdkahy2abpi"; depends=[snpStats]; }; whisker = derive { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; }; +whoami = derive { name="whoami"; version="1.1.0"; sha256="15mj1s0dfr9y14b23nx0506r0vz48bm1f6mf0fi7b390q0zmndq7"; depends=[httr jsonlite]; }; widals = derive { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; }; widenet = derive { name="widenet"; version="0.1-2"; sha256="1nimm8szbg82vg00f5c7b3f3sk0gplssbl4ggasjnh7dl621vfny"; depends=[glmnet relaxnet]; }; wikibooks = derive { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; -wikipediatrend = derive { name="wikipediatrend"; version="0.2.0"; sha256="11gxi94i6xfsj4dz7g2r7ag0gbah2km9ibbmjqihbk5ccxh5kfd6"; depends=[jsonlite stringr RCurl]; }; -wildlifeDI = derive { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[sp rgeos adehabitatLT]; }; -windex = derive { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[geiger ape scatterplot3d]; }; +wikipediatrend = derive { name="wikipediatrend"; version="1.1.4"; sha256="1ccqwnlp0zchjqwxpy1li4wlgjlmdq3vdz6nrcgg7npplq4f6pjl"; depends=[httr jsonlite RCurl rvest stringr]; }; +wildlifeDI = derive { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[adehabitatLT rgeos sp]; }; +windex = derive { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; }; witness = derive { name="witness"; version="1.2"; sha256="1pccn7czm1q0w31zpmky5arkcbnfl94gh1nnkf8kmcccdrr3lxph"; depends=[]; }; wkb = derive { name="wkb"; version="0.1-0"; sha256="0ynamg8zrk80j5ysyg7pymdcxzlscbhhygp8czmsd33p2y31pggd"; depends=[sp]; }; wle = derive { name="wle"; version="0.9-9"; sha256="032zqfqg6ghg56zgr005g8q94zskmbzv1p08lxv227ikkbmnwn53"; depends=[circular]; }; wmlf = derive { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; -wmtsa = derive { name="wmtsa"; version="2.0-0"; sha256="0y2bv166xwwpb1wf6897qybyf84f34qjsmygdbv90r637c050yk5"; depends=[splus2R ifultools MASS]; }; +wmtsa = derive { name="wmtsa"; version="2.0-0"; sha256="0y2bv166xwwpb1wf6897qybyf84f34qjsmygdbv90r637c050yk5"; depends=[ifultools MASS splus2R]; }; wnominate = derive { name="wnominate"; version="0.99"; sha256="19pis0p4kkwyddn8f93p4ff7l1hvcdr7m3hrv4bzmm9nd8iy8mk1"; depends=[pscl]; }; wombsoft = derive { name="wombsoft"; version="2.0"; sha256="11ri29vj1yg2lpr6vf1i45w20hqh8dswj04ylbq0vy27cwmxqljd"; depends=[]; }; -wordcloud = derive { name="wordcloud"; version="2.5"; sha256="1ajqdkm8h1wid3d41zd8v7xzf2swid998w31zrghd45a5lcp7qcm"; depends=[RColorBrewer slam Rcpp Rcpp]; }; +wordcloud = derive { name="wordcloud"; version="2.5"; sha256="1ajqdkm8h1wid3d41zd8v7xzf2swid998w31zrghd45a5lcp7qcm"; depends=[RColorBrewer Rcpp slam]; }; wordmatch = derive { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; }; wordnet = derive { name="wordnet"; version="0.1-10"; sha256="1k0ncxqsvv5vd5xm6nxs66hvqic9zbxf63sshszgpva2cqlyj4q8"; depends=[rJava]; }; wpp2008 = derive { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; -wppExplorer = derive { name="wppExplorer"; version="1.6-1"; sha256="1pgfh9r98yfrk8228iw5hl5pdb4ki6pz49hpf796frd86d94hw0a"; depends=[shiny plyr reshape2 googleVis wpp2012 Hmisc ggplot2]; }; -wq = derive { name="wq"; version="0.4.3"; sha256="1lgxf5pfw3563dpyq0dgj4ps2mc5nqh56y1i77ypscj5lrcgjxrf"; depends=[zoo ggplot2 reshape2]; }; +wppExplorer = derive { name="wppExplorer"; version="1.6-2"; sha256="1y9mdghq4is81gabx47pm1kfay67zv3b9hxz58lhml68wwwsfmsj"; depends=[ggplot2 googleVis Hmisc plyr reshape2 shiny wpp2012]; }; +wq = derive { name="wq"; version="0.4.3"; sha256="1lgxf5pfw3563dpyq0dgj4ps2mc5nqh56y1i77ypscj5lrcgjxrf"; depends=[ggplot2 reshape2 zoo]; }; wrassp = derive { name="wrassp"; version="0.1.3"; sha256="1xza4w5dgc6gda9ybmq386jnb1gkahdi6sds5dqay7pm5mjql6fl"; depends=[]; }; write_snns = derive { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; -wrspathrow = derive { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[wrspathrowData sp raster rgeos rgdal]; }; +wrspathrow = derive { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; wrspathrowData = derive { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; }; -wskm = derive { name="wskm"; version="1.4.19"; sha256="16smir0b4pxkaxgr2vclq8kprpwn0y3fb43ba79q94d6m5hm844y"; depends=[lattice latticeExtra clv]; }; -wsrf = derive { name="wsrf"; version="1.4.0"; sha256="1b9ifswv0civaavmpzi2r3fdbccxg4akzvklqri0hj49kr4cw5pa"; depends=[Rcpp Rcpp]; }; +wskm = derive { name="wskm"; version="1.4.19"; sha256="16smir0b4pxkaxgr2vclq8kprpwn0y3fb43ba79q94d6m5hm844y"; depends=[clv lattice latticeExtra]; }; +wsrf = derive { name="wsrf"; version="1.5.14"; sha256="0j0zlnazz40sv02fl8m5z7rv877m6ak2cms2q3ivy344k8ynjs0m"; depends=[Rcpp]; }; wtcrsk = derive { name="wtcrsk"; version="1.3"; sha256="1viddyms2d9q2hb9z788fcs8vp7gp6vzlsszcnyxgganfjsd85zy"; depends=[]; }; -wux = derive { name="wux"; version="2.0-0"; sha256="04casnfx5cam5a1iqm2x6lldicv11zqxgxjb61qcivga781g5sxg"; depends=[sp ncdf reshape abind fields rgdal rgeos class stringr Hmisc gdata corpcor rworldmap]; }; -x_ent = derive { name="x.ent"; version="1.1.2"; sha256="1wq1gf656jpd6aw08b0g9319gb087zqgn7bzw4amq4k8vk9vjkjm"; depends=[opencpu rJava stringr xtable jsonlite venneuler ggplot2 statmod]; }; +wux = derive { name="wux"; version="2.0-2"; sha256="0y0pn1hr94wgr6v8xac4hf3g137rx1zr1vdplgpjz1k5v41xvagk"; depends=[abind class corpcor fields gdata Hmisc ncdf reshape rgdal rgeos rworldmap sp stringr]; }; +x_ent = derive { name="x.ent"; version="1.1.2"; sha256="0wbbhsnlm5yln72h648nz3y5w83kq9qvpw0pk56lsc1bafps712p"; depends=[ggplot2 jsonlite opencpu rJava statmod stringr venneuler xtable]; }; x12 = derive { name="x12"; version="1.6.0"; sha256="0bl50nva4ai8p24f9hr622m0fc5nmbjakn3rsvl79g050gjsd4i3"; depends=[stringr]; }; -x12GUI = derive { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[x12 Hmisc RGtk2 cairoDevice lattice stringr]; }; -xergm = derive { name="xergm"; version="1.4.1"; sha256="1lcqa2vxdg4ljk2p0m8cqw68bqxycxql57nr3n4ggic2ys0sbrxa"; depends=[statnet statnet_common network sna ergm texreg Matrix boot coda ROCR igraph vegan lme4 Rcpp speedglm Rcpp]; }; +x12GUI = derive { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; }; +xergm = derive { name="xergm"; version="1.5"; sha256="1gjdcvpi84s0cy52a27n872ygb50mqw0w5117s3h7v1j68w88wv8"; depends=[boot coda ergm igraph lme4 Matrix network Rcpp ROCR sna speedglm statnet statnet_common texreg vegan]; }; xgobi = derive { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; -xkcd = derive { name="xkcd"; version="0.0.4"; sha256="1hwr3ylgflzizgp8ffwdv9cgcngpjwmpxvgrvg8ad89a40l1mxcr"; depends=[ggplot2 extrafont Hmisc]; }; +xkcd = derive { name="xkcd"; version="0.0.4"; sha256="1hwr3ylgflzizgp8ffwdv9cgcngpjwmpxvgrvg8ad89a40l1mxcr"; depends=[extrafont ggplot2 Hmisc]; }; xlsx = derive { name="xlsx"; version="0.5.7"; sha256="0qxkdpf1dvi0x7fy65abjx2j60rdx7fv5yi8l2wdm0f2631pnwin"; depends=[rJava xlsxjars]; }; xlsxjars = derive { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; -xml2 = derive { name="xml2"; version="0.1.0"; sha256="0p00lg8p5naw77k2fk6wbqmqdhj9iv2zn7g00gp7g253lmm8q740"; depends=[Rcpp Rcpp BH]; }; +xml2 = derive { name="xml2"; version="0.1.1"; sha256="1k6xzgx87vqzg1lkc1jaxxlw7zyhzqsis51q5p9jn0q3pw02qf53"; depends=[BH Rcpp]; }; xoi = derive { name="xoi"; version="0.61-1"; sha256="0ypy0rb0f0bns41vjzyln04k3hypgr3wysqbdi0b0r14ip5rb47k"; depends=[qtl]; }; -xpose4 = derive { name="xpose4"; version="4.5.3"; sha256="02m3ad4287ljsi4qrzwd84lfj1y6rz9nias2zk4cbqm14gf19pdf"; depends=[lattice gam Hmisc survival]; }; +xpose4 = derive { name="xpose4"; version="4.5.3"; sha256="02m3ad4287ljsi4qrzwd84lfj1y6rz9nias2zk4cbqm14gf19pdf"; depends=[gam Hmisc lattice survival]; }; xtable = derive { name="xtable"; version="1.7-4"; sha256="1fvx4p058ygsyj9f4xb9k5h0fdi4zibadqrsn4qbx4am30qrlqj7"; depends=[]; }; xtal = derive { name="xtal"; version="1.0"; sha256="1717pl64nbliwbdg5fs6cwj7zvgrm00zlyj2dhi06yyg16gq1w8k"; depends=[]; }; -xtermStyle = derive { name="xtermStyle"; version="2.2-4"; sha256="0m1lwr7smym7aczcqqgqj5bx46j38ymmljilxl54bby188qhfcyz"; depends=[]; }; +xtermStyle = derive { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xts = derive { name="xts"; version="0.9-7"; sha256="163hzcnxrdb4lbsnwwv7qa00h4qlg4jm289acgvbg4jbiywpq7zi"; depends=[zoo]; }; -yaImpute = derive { name="yaImpute"; version="1.0-23"; sha256="11k7ab5s9zldn0py7zhgi1zcbpsw3bp2xf6s6salv68fhzdgpzp8"; depends=[]; }; +yaImpute = derive { name="yaImpute"; version="1.0-24"; sha256="0vqzcxkrnsj99kpc4fx9lbm446fjgsjcbfakm9pdk013mxiii72d"; depends=[]; }; yacca = derive { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; }; yaml = derive { name="yaml"; version="2.1.13"; sha256="18kz5mfn7qpif5pn91w4vbrc5bkycsj85vwm5wxwzjlb02i9mxi6"; depends=[]; }; ycinterextra = derive { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; -yhat = derive { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[yacca miscTools plotrix boot]; }; -yhatr = derive { name="yhatr"; version="0.13.4"; sha256="1z1i48nhyadn1l00sw50qif2zyjvy1jbvq91chnapfdbjjsgfv2x"; depends=[httr RCurl rjson plyr jsonlite stringr]; }; -ykmeans = derive { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[plyr foreach]; }; -yuima = derive { name="yuima"; version="1.0.36"; sha256="1rz96v0c9sikjvm3i8x887v1bkiixps691vclpd6i4cchyayx63h"; depends=[zoo expm cubature mvtnorm]; }; +yhat = derive { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[boot miscTools plotrix yacca]; }; +yhatr = derive { name="yhatr"; version="0.13.4"; sha256="1z1i48nhyadn1l00sw50qif2zyjvy1jbvq91chnapfdbjjsgfv2x"; depends=[httr jsonlite plyr RCurl rjson stringr]; }; +ykmeans = derive { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; }; +yuima = derive { name="yuima"; version="1.0.71"; sha256="0aqb87jlvlq6iw2mlngiylvayd6y2wrc82zl1za442gqq8py00if"; depends=[cubature expm mvtnorm zoo]; }; zCompositions = derive { name="zCompositions"; version="1.0.3"; sha256="0lxy201ys9dvv8c09q8wbks1c2jkjyd1bbrxhjr7zi9j7m0parl7"; depends=[MASS NADA truncnorm]; }; zendeskR = derive { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; -zic = derive { name="zic"; version="0.8.1"; sha256="05mn894qdx6k7158dbsjy2b49n0gz5xnmlixr2dhkxc12ydj6zs5"; depends=[Rcpp RcppArmadillo coda Rcpp RcppArmadillo]; }; +zetadiv = derive { name="zetadiv"; version="0.1"; sha256="1p9mxy70mgqxjn7szh44217nvhjh90237kp5znli1r01ch64mx6b"; depends=[car mgcv vegan]; }; +zic = derive { name="zic"; version="0.8.1"; sha256="05mn894qdx6k7158dbsjy2b49n0gz5xnmlixr2dhkxc12ydj6zs5"; depends=[coda Rcpp RcppArmadillo]; }; zipcode = derive { name="zipcode"; version="1.0"; sha256="1lvlf1h5fv412idpdssjfh4fki933dm5nhr41ppl1mf45b9j7azn"; depends=[]; }; zipfR = derive { name="zipfR"; version="0.6-6"; sha256="1y3nqfjg5m89mdvcmqwjmwlc8p3hpcqnwv4ji1a7ggg4n63lwl3j"; depends=[]; }; zoeppritz = derive { name="zoeppritz"; version="1.0-5"; sha256="0a501411gjs02vvhxdy8z3a5449arkamdidf2q6qswkkiv68qq04"; depends=[]; }; -zoib = derive { name="zoib"; version="1.3.0"; sha256="15i2gczc6sh0vyi51k105qd3bymwkpbpv2xm99jwflpa170yd8jp"; depends=[rjags coda matrixcalc Formula]; }; +zoib = derive { name="zoib"; version="1.3.0"; sha256="15i2gczc6sh0vyi51k105qd3bymwkpbpv2xm99jwflpa170yd8jp"; depends=[coda Formula matrixcalc rjags]; }; zoo = derive { name="zoo"; version="1.7-12"; sha256="1n64pdmk2vrmiprwkncaaf936c97nlc1l78bvmzp991rijr9vqg5"; depends=[lattice]; }; zooaRch = derive { name="zooaRch"; version="1.0"; sha256="1krzwrk2cknlsmd3hn8c2lly10pd8k8jj2x12mbjhr2wws0i5fj4"; depends=[ggplot2]; }; -zooimage = derive { name="zooimage"; version="3.0-5"; sha256="1r3slmyw0dyqfa40dr5xga814z09ibhmmby8p1cii5lh61xm4c39"; depends=[svMisc svDialogs mlearning filehash jpeg png]; }; +zooimage = derive { name="zooimage"; version="3.0-5"; sha256="1r3slmyw0dyqfa40dr5xga814z09ibhmmby8p1cii5lh61xm4c39"; depends=[filehash jpeg mlearning png svDialogs svMisc]; }; zoom = derive { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; }; ztable = derive { name="ztable"; version="0.1.5"; sha256="1jfqnqy9544gfvz3bsb48v4177nwp4b4n9l2743asq8sbq305b5r"; depends=[]; }; -zyp = derive { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; }; +zyp = derive { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; }; } diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 11d7193edee7..34dbf4cba523 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -7,11 +7,11 @@ let buildRPackage = pkgs.callPackage ./generic-builder.nix { inherit R; }; - # Package template + # Generates package templates given per-repository settings # # some packages, e.g. cncaGUI, require X running while installation, # so that we use xvfb-run if requireX is true. - derive = lib.makeOverridable ({ + mkDerive = {mkHomepage, mkUrls}: lib.makeOverridable ({ name, version, sha256, depends ? [], doCheck ? true, @@ -21,21 +21,33 @@ let }: buildRPackage { name = "${name}-${version}"; src = fetchurl { - urls = [ - "mirror://cran/src/contrib/${name}_${version}.tar.gz" - "mirror://cran/src/contrib/00Archive/${name}/${name}_${version}.tar.gz" - ]; inherit sha256; + urls = mkUrls { inherit name version; }; }; inherit doCheck requireX; propagatedBuildInputs = depends; nativeBuildInputs = depends; - meta.homepage = "http://cran.r-project.org/web/packages/${name}/"; + meta.homepage = mkHomepage name; meta.platforms = R.meta.platforms; meta.hydraPlatforms = hydraPlatforms; meta.broken = broken; }); + # Templates for generating Bioconductor and CRAN packages + # from the name, version, sha256, and optional per-package arguments above + # + deriveBioc = mkDerive { + mkHomepage = name: "http://cran.r-project.org/web/packages/${name}/"; + mkUrls = {name, version}: [ "mirror://bioc/src/contrib/${name}_${version}.tar.gz" ]; + }; + deriveCran = mkDerive { + mkHomepage = name: "http://bioconductor.org/packages/release/bioc/html/${name}.html"; + mkUrls = {name, version}: [ + "mirror://cran/src/contrib/${name}_${version}.tar.gz" + "mirror://cran/src/contrib/00Archive/${name}/${name}_${version}.tar.gz" + ]; + }; + # Overrides package definitions with nativeBuildInputs. # For example, # @@ -193,12 +205,14 @@ let # `self` is `_self` with overridden packages; # packages in `_self` may depends on overridden packages. self = (defaultOverrides _self self) // overrides; - _self = import ./cran-packages.nix { inherit self derive; }; + _self = import ./bioc-packages.nix { inherit self; derive = deriveBioc; } // + import ./cran-packages.nix { inherit self; derive = deriveCran; }; # tweaks for the individual packages and "in self" follow packagesWithRDepends = { FactoMineR = [ self.car ]; + pander = [ self.codetools ]; }; packagesWithNativeBuildInputs = { @@ -209,14 +223,18 @@ let BayesVarSel = [ pkgs.gsl ]; BayesXsrc = [ pkgs.readline pkgs.ncurses ]; bigGP = [ pkgs.openmpi ]; + BiocCheck = [ pkgs.which ]; + Biostrings = [ pkgs.zlib ]; bnpmr = [ pkgs.gsl ]; BNSP = [ pkgs.gsl ]; cairoDevice = [ pkgs.gtk2 ]; Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo ]; + Cardinal = [ pkgs.which ]; CARramps = [ pkgs.linuxPackages.nvidia_x11 pkgs.liblapack ]; chebpol = [ pkgs.fftw ]; + ChemmineOB = [ pkgs.openbabel pkgs.pkgconfig ]; cit = [ pkgs.gsl ]; - curl = [ pkgs.curl pkgs.openldap ]; + curl = [ pkgs.curl ]; devEMF = [ pkgs.xlibs.libXft ]; diversitree = [ pkgs.gsl pkgs.fftw ]; EMCluster = [ pkgs.liblapack ]; @@ -225,11 +243,13 @@ let Formula = [ pkgs.gmp ]; geoCount = [ pkgs.gsl ]; git2r = [ pkgs.zlib pkgs.openssl ]; + GLAD = [ pkgs.gsl ]; glpkAPI = [ pkgs.gmp pkgs.glpk ]; gmp = [ pkgs.gmp ]; graphscan = [ pkgs.gsl ]; gsl = [ pkgs.gsl ]; HiCseg = [ pkgs.gsl ]; + iBMQ = [ pkgs.gsl ]; igraph = [ pkgs.gmp ]; JavaGD = [ pkgs.jdk ]; jpeg = [ pkgs.libjpeg ]; @@ -244,6 +264,7 @@ let nloptr = [ pkgs.nlopt ]; openssl = [ pkgs.openssl ]; outbreaker = [ pkgs.gsl ]; + pander = [ pkgs.pandoc pkgs.which ]; pbdMPI = [ pkgs.openmpi ]; pbdNCDF4 = [ pkgs.netcdf ]; pbdPROF = [ pkgs.openmpi ]; @@ -256,6 +277,8 @@ let R2GUESS = [ pkgs.gsl ]; R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ]; RAppArmor = [ pkgs.libapparmor ]; + rapportools = [ pkgs.which ]; + rapport = [ pkgs.which ]; rbamtools = [ pkgs.zlib ]; RCA = [ pkgs.gmp ]; rcdd = [ pkgs.gmp ]; @@ -265,11 +288,12 @@ let RcppZiggurat = [ pkgs.gsl ]; rgdal = [ pkgs.proj pkgs.gdal ]; rgeos = [ pkgs.geos ]; + rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ]; rgl = [ pkgs.mesa pkgs.x11 ]; Rglpk = [ pkgs.glpk ]; - rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ]; RGtk2 = [ pkgs.gtk2 ]; Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ]; + Rhtslib = [ pkgs.zlib ]; ridge = [ pkgs.gsl ]; RJaCGH = [ pkgs.zlib ]; rjags = [ pkgs.jags ]; @@ -323,6 +347,7 @@ let VBmix = [ pkgs.gsl pkgs.fftw pkgs.qt4 ]; WhopGenome = [ pkgs.zlib ]; XBRL = [ pkgs.zlib pkgs.libxml2 ]; + xml2 = [ pkgs.libxml2 ]; XML = [ pkgs.libtool pkgs.libxml2 pkgs.xmlsec pkgs.libxslt ]; }; @@ -373,251 +398,242 @@ let }; packagesRequireingX = [ - "AnalyzeFMRI" - "AnnotLists" - "AnthropMMD" - "AtelieR" - "BAT" - "BCA" - "BEQI2" - "BHMSMAfMRI" - "BioGeoBEARS" - "BiodiversityR" - "CCTpack" - "CommunityCorrelogram" - "ConvergenceConcepts" - "DALY" - "DSpat" - "Deducer" - "DeducerExtras" - "DeducerPlugInExample" - "DeducerPlugInScaling" - "DeducerSpatial" - "DeducerSurvival" - "HomoPolymer" - "MetSizeR" - "DeducerText" - "Demerelate" - "DescTools" - "DivMelt" - "ENiRG" - "EcoVirtual" - "EnQuireR" - "FAiR" - "FD" - "FFD" - "FeedbackTS" - "FreeSortR" - "GGEBiplotGUI" - "GPCSIV" - "GUniFrac" - "Geneland" - "GeoGenetix" - "GeoXp" - "GrammR" - "GrapheR" - "GroupSeq" - "HH" - "HiveR" - "IsotopeR" - "JGR" - "KappaGUI" - "LS2Wstat" - "MAR1" - "MTurkR" - "MareyMap" - "MergeGUI" - "Meth27QC" - "MicroStrategyR" - "MissingDataGUI" - "MplusAutomation" - "OligoSpecificitySystem" - "OpenRepGrid" - "PBSadmb" - "PBSmodelling" - "PCPS" - "PKgraph" - "PopGenReport" - "PredictABEL" - "PrevMap" - "ProbForecastGOP" - "QCAGUI" - "R2STATS" - "RHRV" - "RNCEP" - "RQDA" - "RSDA" - "RSurvey" - "RandomFields" - "Rcmdr" - "RcmdrPlugin_BCA" - "RcmdrPlugin_DoE" - "RcmdrPlugin_EACSPIR" - "RcmdrPlugin_EBM" - "RcmdrPlugin_EZR" - "RcmdrPlugin_EcoVirtual" - "RcmdrPlugin_FactoMineR" - "RcmdrPlugin_HH" - "RcmdrPlugin_IPSUR" - "RcmdrPlugin_KMggplot2" - "RcmdrPlugin_MA" - "RcmdrPlugin_MPAStats" - "RcmdrPlugin_ROC" - "RcmdrPlugin_SCDA" - "RcmdrPlugin_SLC" - "RcmdrPlugin_SM" - "RcmdrPlugin_StatisticalURV" - "RcmdrPlugin_TeachingDemos" - "RcmdrPlugin_UCA" - "RcmdrPlugin_coin" - "RcmdrPlugin_depthTools" - "RcmdrPlugin_doex" - "RcmdrPlugin_epack" - "RcmdrPlugin_lfstat" - "RcmdrPlugin_mosaic" - "RcmdrPlugin_orloca" - "RcmdrPlugin_plotByGroup" - "RcmdrPlugin_pointG" - "RcmdrPlugin_qual" - "RcmdrPlugin_sampling" - "RcmdrPlugin_sos" - "RcmdrPlugin_steepness" - "RcmdrPlugin_survival" - "RcmdrPlugin_temis" - "RenextGUI" - "RunuranGUI" - "SOLOMON" - "SPACECAP" - "SRRS" - "SSDforR" - "STEPCAM" - "SYNCSA" - "Simile" - "SimpleTable" - "StatDA" - "SyNet" - "TDMR" - "TED" - "TIMP" - "TTAinterfaceTrendAnalysis" - "TestScorer" - "VIMGUI" - "VecStatGraphs3D" - "WMCapacity" "accrual" "ade4TkGUI" "adehabitat" "analogue" "analogueExtra" + "AnalyzeFMRI" + "AnnotLists" + "AnthropMMD" "aplpack" "aqfig" "arf3DS4" "asbio" + "AtelieR" + "BAT" "bayesDem" + "BCA" + "BEQI2" "betapart" "betaper" + "BHMSMAfMRI" + "BiodiversityR" + "BioGeoBEARS" "bio_infer" "bipartite" "biplotbootGUI" "blender" "cairoDevice" + "CCTpack" "cncaGUI" "cocorresp" + "CommunityCorrelogram" "confidence" "constrainedKriging" + "ConvergenceConcepts" "cpa" + "DALY" "dave" "debug" + "Deducer" + "DeducerExtras" + "DeducerPlugInExample" + "DeducerPlugInScaling" + "DeducerSpatial" + "DeducerSurvival" + "DeducerText" + "Demerelate" + "DescTools" "detrendeR" "dgmb" + "DivMelt" "dpa" - "dynBiplotGUI" + "DSpat" "dynamicGraph" + "dynBiplotGUI" + "EasyqpcR" + "EcoVirtual" + "ENiRG" + "EnQuireR" "eVenn" "exactLoglinTest" - "fSRM" + "FAiR" "fat2Lpoly" "fbati" + "FD" "feature" + "FeedbackTS" + "FFD" "fgui" "fisheyeR" "fit4NM" "forams" "forensim" + "FreeSortR" "fscaret" - "gWidgets2RGtk2" - "gWidgets2tcltk" - "gWidgetsRGtk2" - "gWidgetstcltk" + "fSRM" "gcmr" + "Geneland" + "GeoGenetix" + "geomorph" "geoR" "geoRglm" - "geomorph" "georob" + "GeoXp" + "GGEBiplotGUI" "gnm" + "GPCSIV" + "GrammR" + "GrapheR" + "GroupSeq" "gsubfn" + "GUniFrac" + "gWidgets2RGtk2" + "gWidgets2tcltk" + "gWidgetsRGtk2" + "gWidgetstcltk" + "HH" + "HiveR" + "HomoPolymer" "iBUGS" - "iDynoR" "ic50" + "iDynoR" "in2extRemes" "iplots" "isopam" + "IsotopeR" + "JGR" + "KappaGUI" "likeLTD" "loe" "logmult" + "LS2Wstat" + "MAR1" + "MareyMap" "memgene" + "MergeGUI" "metacom" + "Meth27QC" + "MetSizeR" + "MicroStrategyR" "migui" "miniGUI" + "MissingDataGUI" "mixsep" "mlDNA" + "MplusAutomation" "mpmcorrelogram" "mritc" + "MTurkR" "multgee" "multibiplotGUI" "nodiv" + "OligoSpecificitySystem" "onemap" + "OpenRepGrid" "palaeoSig" "paleoMAS" "pbatR" + "PBSadmb" + "PBSmodelling" + "PCPS" "pez" "phylotools" "picante" + "PKgraph" "playwith" "plotSEMM" "plsRbeta" "plsRglm" "pmg" + "PopGenReport" "poppr" "powerpkg" + "PredictABEL" "prefmod" + "PrevMap" + "ProbForecastGOP" + "QCAGUI" "qtbase" "qtpaint" "qtutils" + "R2STATS" "r4ss" - "rAverage" + "RandomFields" "rareNMtests" + "rAverage" + "Rcmdr" + "RcmdrPlugin_BCA" + "RcmdrPlugin_coin" + "RcmdrPlugin_depthTools" + "RcmdrPlugin_DoE" + "RcmdrPlugin_doex" + "RcmdrPlugin_EACSPIR" + "RcmdrPlugin_EBM" + "RcmdrPlugin_EcoVirtual" + "RcmdrPlugin_epack" + "RcmdrPlugin_EZR" + "RcmdrPlugin_FactoMineR" + "RcmdrPlugin_HH" + "RcmdrPlugin_IPSUR" + "RcmdrPlugin_KMggplot2" + "RcmdrPlugin_lfstat" + "RcmdrPlugin_MA" + "RcmdrPlugin_mosaic" + "RcmdrPlugin_MPAStats" + "RcmdrPlugin_orloca" + "RcmdrPlugin_plotByGroup" + "RcmdrPlugin_pointG" + "RcmdrPlugin_qual" + "RcmdrPlugin_ROC" + "RcmdrPlugin_sampling" + "RcmdrPlugin_SCDA" + "RcmdrPlugin_SLC" + "RcmdrPlugin_SM" + "RcmdrPlugin_sos" + "RcmdrPlugin_StatisticalURV" + "RcmdrPlugin_steepness" + "RcmdrPlugin_survival" + "RcmdrPlugin_TeachingDemos" + "RcmdrPlugin_temis" + "RcmdrPlugin_UCA" "recluster" "relax" "relimp" + "RenextGUI" "reportRx" "reshapeGUI" "rgl" + "RHRV" "rich" "ringscale" "rioja" "ripa" "rite" "rnbn" + "RNCEP" + "RQDA" + "RSDA" "rsgcc" + "RSurvey" + "RunuranGUI" "sdcMicroGUI" "sharpshootR" "simba" + "Simile" + "SimpleTable" + "SOLOMON" "soundecology" + "SPACECAP" "spacodiR" "spatsurv" "sqldf" + "SRRS" + "SSDforR" "statcheck" + "StatDA" + "STEPCAM" "stosim" "strvalidator" "stylo" @@ -625,17 +641,27 @@ let "svIDE" "svSocket" "svWidgets" + "SYNCSA" + "SyNet" "tcltk2" + "TDMR" + "TED" + "TestScorer" + "TIMP" "titan" "tkrgl" "tkrplot" "tmap" "tspmeta" + "TTAinterfaceTrendAnalysis" "twiddler" "vcdExtra" + "VecStatGraphs3D" "vegan" "vegan3d" "vegclust" + "VIMGUI" + "WMCapacity" "x12GUI" "xergm" ]; @@ -649,320 +675,841 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ - "ACNE" # requires aroma_affymetrix - "Actigraphy" # SDMTools.so: undefined symbol: X - "adaptsmoFMRI" # requires spatstat - "ads" # requires spatstat - "agridat" # requires pcaMethods - "aLFQ" # requires protiq - "AntWeb" # requires leafletR - "aoristic" # requires spatstat - "apmsWAPP" # requires genefilter, Biobase, multtest, edgeR, DESeq, and aroma.light - "aroma_affymetrix" # requires aroma_core - "aroma_cn" # requires PSCBS - "aroma_core" # requires PSCBS - "ArrayBin" # requires SAGx - "babel" # requires edgeR - "BACA" # requires RDAVIDWebService - "BcDiag" # requires fabia - "bdvis" # requres taxize - "beadarrayFilter" # requires beadarray - "beadarrayMSV" # requires Biobase, geneplotter, andlimma - "bigGP" # requires MPI running. HELP WANTED! - "bigpca" # requires NCmisc - "Biograph" # requires mvna - "biotools" # requires rpanel - "BiSEp" # requires GOSemSim, GO.db, and org.Hs.eg.db - "BLCOP" # depends on broken fPortfolio - "bmrm" # requires clpAPI - "branchLars" # requires Rgraphviz - "BRugs" # requires OpenBUGS - "calmate" # requires aroma_core - "CARrampsOcl" # depends on OpenCL - "CHAT" # requires DNAcopy - "ChemoSpec" # depends on broken speaq - "classGraph" # requires graph, and Rgraphviz - "clpAPI" # requires clp - "compendiumdb" # requires Biobase - "CORM" # requires limma - "cplexAPI" # requires CPLEX - "crmn" # requires pcaMethods, and Biobase - "Crossover" # fails self-test - "CrypticIBDcheck" # requires rJPSGCS - "cudaBayesreg" # requres Rmath - "curvHDR" # requires flowCore - "D2C" # requires gRbase - "DAAGbio" # requires limma - "daff" # requires V8 to build - "dagbag" # requires Rlapack - "DBKGrad" # requires SDD - "dbmss" # requires spatstat - "DCGL" # requires limma - "dcGOR" # requires dnet - "demi" # requires affy, affxparser, and oligo - "DepthProc" # requires samr - "DiagrammeR" # requires V8 to build - "DiffCorr" # misses undeclared dependencies 'pcaMethods', 'multtest' - "Digiroo2" # requires spatstat - "dixon" # requires spatstat - "dnet" # requires supraHex, graph, Rgraphviz, and Biobase - "doMPI" # requires MPI running. HELP WANTED! - "dpcR" # requires spatstat - "DSpat" # requires spatstat - "ecespa" # requires spatstat - "ecoengine" # requires leafletR - "ecospat" # requires spatstat - "edgeRun" # requires edgeR - "EMA" # requires siggenes, affy, multtest, gcrma, biomaRt, and AnnotationDbi - "empiricalFDR_DESeq2" # requires DESeq2, and GenomicRanges - "epoc" # requires graph, and Rgraphviz - "erpR" # requires rpanel - "ETAS" # requires spatstat - "eulerian" # requires graph - "evobiR" # requres taxiz - "evora" # requires qvalue - "ExomeDepth" # requires GenomicRanges, and Rsamtools - "FAMT" # requires impute - "fdrDiscreteNull" # requires edgeR - "FHtest" # requires interval - "flexCWM" # depends on broken mixture - "fPortfolio" # requires rneos - "FunctionalNetworks" # requires breastCancerVDX, and Biobase - "gamlss_demo" # requires rpanel - "GeneticTools" # requires snpStats - "geojsonio" # requires V8 to build - "GExMap" # requires Biobase and multtest - "gitter" # requires EBImage - "glmgraph" # test suite says: "undefined symbol: dgemv_" - "gmatrix" # depends on proprietary cudatoolkit - "gMCP" # fails self-test - "GOGANPA" # requires WGCNA - "gputools" # depends on proprietary cudatoolkit - "gRain" # requires gRbase - "gRapHD" # requires graph - "gRbase" # requires RBGL, and graph - "gRc" # requires gRbase - "gridDebug" # requires gridGraphviz - "gridGraphviz" # requires graph, and Rgraphviz - "GriegSmith" # requires spatstat - "gRim" # requires gRbase - "GSAgm" # requires edgeR - "GUIDE" # requires rpanel - "h2o" # tries to download some h2o.jar during its build - "hasseDiagram" # requires Rgraphviz - "hddplot" # requires multtest - "HierO" # requires rneos - "HiPLARM" # requires MAGMA or PLASMA - "hpoPlot" # requires Rgraphviz - "hsdar" # fails to build - "HTSCluster" # requires edgeR - "iFes" # depends on proprietary cudatoolkit - "imputeLCMD" # requires pcaMethods, and impute - "intamapInteractive" # requires spatstat - "interval" # requires Icens - "ionflows" # requires Biostrings - "iRefR" # requires graph, and RBGL - "IsoGene" # requires Biobase, and affy - "isva" # requires qvalue - "jomo" # linking errors - "js" # requires broken V8 - "KANT" # requires affy, and Biobase - "ktspair" # requires Biobase - "latticeDensity" # requires spatstat - "leapp" # requires sva - "lefse" # SDMTools.so: undefined symbol: X - "lfe" # fails to compile - "lgcp" # requires rpanel - "LinRegInteractive" # requires Rpanel - "LogisticDx" # requires gRbase - "LOST" # requires pcaMethods - "ltsk" # requires Rlapack and Rblas - "magma" # requires MAGMA - "MAMA" # requires metaMA - "MEET" # requires pcaMethods, and seqLogo - "metabolomics" # depends on broken crmn - "MetaDE" # requires impute, and Biobase - "MetaLandSim" # requires Biobase - "metaMA" # requires limma - "metaMix" # requires MPI running. HELP WANTED! - "mGSZ" # requires Biobase, and limma - "MigClim" # SDMTools.So: Undefined Symbol: X - "minimist" # requires broken V8 - "miRtest" # requires globaltest, GlobalAncova, and limma - "MixGHD" # requires mixture to build - "mixture" # mixture.so: undefined symbol: dtrmm_ - "moduleColor" # requires impute - "mongolite" # doesn't find OpenSSL - "msarc" # requires AnnotationDbi - "MSeasy" # requires mzR, and xcms - "MSeasyTkGUI" # requires MSeasyTkGUI - "MSIseq" # requires IRanges - "msSurv" # requires graph - "muir" # requires DiagrammeR to build - "multiDimBio" # requires pcaMethods - "mutossGUI" # requires mutoss - "mutoss" # requires multtest - "MXM" # depends on broken gRbase - "NBPSeq" # requires qvalue - "NCmisc" # requires BiocInstaller - "netClass" # requires samr - "nettools" # requires WGCNA - "netweavers" # requires BiocGenerics, Biobase, and limma - "NLPutils" # requires qdap - "NORRRM" # can't load SDMTools properly - "NSA" # requires aroma_core - "OpenCL" # FIXME: requires CL/opencl.h - "optBiomarker" # requires rpanel - "ora" # requires ROracle - "orQA" # requires genefilter - "PairViz" # requires graph - "PANDA" # requires GO.db - "ParDNAcopy" # requires DNAcopy - "pathClass" # requires affy, and Biobase - "PatternClass" # SDMTools.So: Undefined Symbol: X - "pbdBASE" # requires pbdMPI - "pbdDEMO" # requires pbdMPI - "pbdDMAT" # requires pbdMPI - "pbdSLAP" # requires pbdMPI - "PBSddesolve" # fails its test suite for unclear reasons - "PBSmapping" # fails its test suite for unclear reasons - "pcaL1" # requires clp - "pcalg" # requires graph, and RBGL - "PCGSE" # requires safe - "PCS" # requires multtest - "PepPrep" # requires biomaRt - "PerfMeas" # requires limma, graph, and RBGL - "permGPU" # requires Biobase - "PhViD" # requires LBE - "pi0" # requires qvalue - "plmDE" # requires limma - "plsRcox" # requires survcomp - "PMA" # requires impute - "pmcgd" # depends on broken mixture - "pmclust" # requires MPI running. HELP WANTED! - "polyCub" # requires spatstat - "ppiPre" # requires AnnotationDbi, GOSemSim, GO.db - "pRF" # requires multtest - "propOverlap" # requires Biobase - "protiq" # requires graph, and RBGL - "PSCBS" # requires DNAcopy - "pubmed_mineR" # requires SSOAP - "PubMedWordcloud" # requires GOsummaries - "qdap" # requires gender - "qtlnet" # requires pcalg - "qtpaint" # can't find QtCore libraries - "QuACN" # requires graph, RBGL - "quanteda" # fails to build - "QuasiSeq" # requires edgeR - "RADami" # requires Biostrings - "raincpc" # SDMTools.so: undefined symbol: X - "rainfreq" # SDMTools.so: undefined symbol: X - "RAM" # requires Heatplus - "RapidPolygonLookup" # depends on broken PBSmapping - "RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges - "RbioRXN" # requires fmcsR, and KEGGREST - "RcmdrPlugin_seeg" # requires seeg - "Rcplex" # requires cplexAPI - "RcppAPT" # configure script depends on /bin/sh - "RcppRedis" # requires Hiredis - "rDEA" # no such file or directory - "RDieHarder" # requires libdieharder - "reader" # requires NCmisc - "REBayes" # requires Rmosek - "RefFreeEWAS" # requires isva - "retistruct" # depends on broken RImageJROI - "rgp" # fails self-test - "rgpui" # depends on broken rgp - "RImageJROI" # requires spatstat - "rjade" # requires V8 to build - "rJPSGCS" # requires chopsticks - "rLindo" # requires LINDO API - "Rmosek" # requires mosek - "RnavGraph" # requires graph, and RBGL - "rneos" # requires XMLRPC - "RNeXML" # requres taxize - "RobLoxBioC" # requires Biobase - "RobLox" # requires Biobase - "RockFab" # requires EBImage - "ROI_plugin_symphony" # depends on broken Rsymphony - "ROracle" # requires OCI - "rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED! - "RQuantLib" # requires QuantLib - "RSAP" # requires SAPNWRFCSDK - "RSeed" # requires RBGL, and graph - "rsig" # requires survcomp - "RSNPset" # requires qvalue - "Rsymphony" # FIXME: requires SYMPHONY - "RVideoPoker" # requires Rpanel - "rysgran" # requires soiltexture - "samr" # requires impute - "SDD" # requires rpanel - "seeg" # requires spatstat - "selectspm" # depends on broken ecespa - "semiArtificial" # requires RSNNS - "SeqFeatR" # requires Biostrings, qvalue, and widgetTools - "SeqGrapheR" # depends on Biostrings - "sequenza" # requires copynumber - "SGCS" # requires spatstat - "siar" # requires spatstat - "SID" # requires pcalg - "SimRAD" # requires Biostrings, and ShortRead - "SimSeq" # requires edgeR - "siplab" # requires spatstat - "smart" # requires PMA - "snpEnrichment" # requires snpStats - "snplist" # requires biomaRt - "snpStatsWriter" # requires snpStats - "SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools - "SOD" # depends on proprietary cudatoolkit - "soilphysics" # requires rpanel - "sparr" # requires spatstat - "spatialsegregation" # requires spatstat - "SpatialVx" # requires spatstat - "speaq" # requires MassSpecWavelet - "spocc" # requires leafletR - "SQDA" # requires limma - "stagePop" # depends on broken PBSddesolve - "statar" # depends on broken lfe - "Statomica" # requires Biobase, multtest - "stpp" # requires spatstat - "structSSI" # requires multtest - "strum" # requires Rgraphviz - "superbiclust" # requires fabia - "surveillance" # requires polyCub - "swamp" # requires impute - "sybilSBML" # requires libSBML - "taxize" # requres bold - "TcGSA" # requires multtest - "topologyGSA" # requires gRbase - "TR8" # requres taxize - "trip" # requires spatstat - "TROM" # misses undeclared dependencies topGO', 'AnnotationDbi', 'GO.db' - "ttScreening" # requires sva, and limma - "V8" # compilation error - "vmsbase" # depends on broken PBSmapping - "vows" # requires rpanel - "WGCNA" # requires impute - "wgsea" # requires snpStats - "WideLM" # depends on proprietary cudatoolkit - "x_ent" # requires opencpu - "zoib" # tarball is invalid on server - "timeSeq" # depends on missing edgeR - "survJamda" # depends on missing survcomp - "ssizeRNA" # depends on missing 'Biobase', 'edgeR', 'limma', 'qvalue' - "h5" # depends on missing h5 system library + "a4Base" # depends on broken package annaffy-1.41.1 + "a4" # depends on broken package annaffy-1.41.1 + "a4Reporting" # depends on broken package annaffy-1.41.1 + "abd" # depends on broken package nlopt-2.4.2 + "adabag" # depends on broken package nlopt-2.4.2 + "ADaCGH2" # depends on broken package tilingArray-1.47.0 + "adSplit" # build is broken + "AER" # depends on broken package nlopt-2.4.2 + "afex" # depends on broken package nlopt-2.4.2 + "affyContam" # depends on broken package affyio-1.37.0 + "affycoretools" # depends on broken package affyio-1.37.0 + "affy" # depends on broken package affyio-1.37.0 + "AffyExpress" # depends on broken package affyio-1.37.0 + "affyILM" # depends on broken package affyio-1.37.0 + "affyio" # build is broken + "affylmGUI" # depends on broken package affyio-1.37.0 + "affyPara" # depends on broken package affyio-1.37.0 + "affypdnn" # depends on broken package affyio-1.37.0 + "affyPLM" # depends on broken package affyio-1.37.0 + "affyQCReport" # depends on broken package affyio-1.37.0 + "AffyRNADegradation" # depends on broken package affyio-1.37.0 + "AffyTiling" # depends on broken package affyio-1.37.0 + "AgiMicroRna" # depends on broken package affyio-1.37.0 + "agRee" # depends on broken package nlopt-2.4.2 + "aLFQ" # depends on broken package nlopt-2.4.2 + "alr3" # depends on broken package nlopt-2.4.2 + "alr4" # depends on broken package nlopt-2.4.2 + "altcdfenvs" # depends on broken package affyio-1.37.0 + "anacor" # depends on broken package nlopt-2.4.2 + "annaffy" # build is broken + "AnnotationForge" # Build Is Broken + "AnnotationHub" # depends on broken package interactiveDisplayBase-1.7.0 + "aods3" # depends on broken package nlopt-2.4.2 + "apComplex" # build is broken + "apt" # depends on broken package nlopt-2.4.2 + "ArfimaMLM" # depends on broken package nlopt-2.4.2 + "arm" # depends on broken package nlopt-2.4.2 + "ArrayExpress" # depends on broken package affyio-1.37.0 + "arrayMvout" # depends on broken package affyio-1.37.0 + "arrayQualityMetrics" # depends on broken package affyio-1.37.0 + "ArrayTools" # depends on broken package affyio-1.37.0 + "ArrayTV" # depends on broken package affyio-1.37.0 + "ARRmNormalization" # Build Is Broken + "ARTool" # depends on broken package nlopt-2.4.2 + "attract" # depends on broken package AnnotationForge-1.11.3 + "BACA" # depends on broken package Category-2.35.1 + "BAGS" # build is broken + "bartMachine" # depends on broken package nlopt-2.4.2 + "bayesDem" # depends on broken package nlopt-2.4.2 + "bayesLife" # depends on broken package nlopt-2.4.2 + "bayesPop" # depends on broken package nlopt-2.4.2 + "Bayesthresh" # depends on broken package nlopt-2.4.2 + "BBRecapture" # depends on broken package nlopt-2.4.2 + "BCA" # depends on broken package nlopt-2.4.2 + "bgmm" # depends on broken package nlopt-2.4.2 + "bgx" # depends on broken package affyio-1.37.0 + "BIFIEsurvey" # depends on broken package nlopt-2.4.2 + "BiGGR" # depends on broken package rsbml-2.27.0 + "BiodiversityR" # depends on broken package nlopt-2.4.2 + "birte" # build is broken + "BiSEp" # depends on broken package GOSemSim-1.27.3 + "blmeco" # depends on broken package nlopt-2.4.2 + "blme" # depends on broken package nlopt-2.4.2 + "bmd" # depends on broken package nlopt-2.4.2 + "bmem" # depends on broken package nlopt-2.4.2 + "bootnet" # depends on broken package nlopt-2.4.2 + "boss" # depends on broken package nlopt-2.4.2 + "BradleyTerry2" # depends on broken package nlopt-2.4.2 + "BRugs" # build is broken + "CADFtest" # depends on broken package nlopt-2.4.2 + "CAFE" # depends on broken package affyio-1.37.0 + "cAIC4" # depends on broken package nlopt-2.4.2 + "canceR" # depends on broken package Category-2.35.1 + "candisc" # depends on broken package nlopt-2.4.2 + "carcass" # depends on broken package nlopt-2.4.2 + "car" # depends on broken package nlopt-2.4.2 + "caret" # depends on broken package nlopt-2.4.2 + "caretEnsemble" # depends on broken package nlopt-2.4.2 + "Category" # Build Is Broken + "categoryCompare" # depends on broken package Category-2.35.1 + "CCpop" # depends on broken package nlopt-2.4.2 + "cellHTS2" # depends on broken package Category-2.35.1 + "ChainLadder" # depends on broken package nlopt-2.4.2 + "ChAMP" # depends on broken package affyio-1.37.0 + "charm" # depends on broken package affyio-1.37.0 + "ChemmineR" # Build Is Broken + "chipenrich" # build is broken + "ChIPQC" # depends on broken package AnnotationForge-1.11.3 + "ChIPXpress" # depends on broken package affyio-1.37.0 + "climwin" # depends on broken package nlopt-2.4.2 + "CLME" # depends on broken package nlopt-2.4.2 + "clpAPI" # build is broken + "clusterPower" # depends on broken package nlopt-2.4.2 + "Actigraphy" # Build Is Broken + "Crossover" # Build Is Broken + "FunctionalNetworks" # Build Is Broken + "HiPLARM" # Build Is Broken + "HierO" # Build Is Broken + "KEGGprofile" # Build Is Broken + "MigClim" # Build Is Broken + "ROracle" # Build Is Broken + "Rcplex" # Build Is Broken + "RcppAPT" # Build Is Broken + "RnaSeqSampleSize" # Build Is Broken + "Rsamtools" # Build Is Broken + "SeqGrapheR" # Build Is Broken + "bamsignals" # build is broken + "bigGP" # build is broken + "cudaBayesreg" # build is broken + "dagbag" # build is broken + "gMCP" # build is broken + "h5" # build is broken + "lefse" # build is broken + "metaMix" # build is broken + "mirIntegrator" # build is broken + "pathview" # build is broken + "pcaL1" # build is broken + "permGPU" # build is broken + "pmclust" # build is broken + "qtbase" # build is broken + "rDEA" # build is broken + "rJPSGCS" # build is broken + "rLindo" # build is broken + "seqCNA" # build is broken + "sybilSBML" # build is broken + "AllelicImbalance" # depends on broken package Rsamtools-1.21.8 + "ArrayExpressHTS" # depends on broken package Rsamtools-1.21.8 + "BEAT" # depends on broken package Rsamtools-1.21.8 + "BLCOP" # 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depends on broken package nlopt-2.4.2 + "LMGene" # depends on broken package affyio-1.37.0 + "lmSupport" # depends on broken package nlopt-2.4.2 + "LogisticDx" # depends on broken package nlopt-2.4.2 + "logitT" # depends on broken package affyio-1.37.0 + "longpower" # depends on broken package nlopt-2.4.2 + "lumi" # depends on broken package affyio-1.37.0 + "LVSmiRNA" # depends on broken package affyio-1.37.0 + "MAIT" # depends on broken package nlopt-2.4.2 + "makecdfenv" # depends on broken package affyio-1.37.0 + "mAPKL" # build is broken + "maPredictDSC" # depends on broken package nlopt-2.4.2 + "marked" # depends on broken package nlopt-2.4.2 + "maskBAD" # depends on broken package affyio-1.37.0 + "MatrixRider" # depends on broken package DirichletMultinomial-1.11.1 + "MaxPro" # depends on broken package nlopt-2.4.2 + "mbest" # depends on broken package nlopt-2.4.2 + "mBPCR" # depends on broken package affyio-1.37.0 + "MCRestimate" # build is broken + "mdgsa" # build is broken + "meboot" # depends on broken package nlopt-2.4.2 + "MEDME" # depends on broken package nlopt-2.4.2 + "MEMSS" # depends on broken package nlopt-2.4.2 + "meshr" # depends on broken package Category-2.35.1 + "metagear" # build is broken + "metaplus" # depends on broken package nlopt-2.4.2 + "metaseqR" # depends on broken package affyio-1.37.0 + "Metatron" # depends on broken package nlopt-2.4.2 + "methyAnalysis" # depends on broken package affyio-1.37.0 + "miceadds" # depends on broken package nlopt-2.4.2 + "micEconAids" # depends on broken package nlopt-2.4.2 + "micEconCES" # depends on broken package nlopt-2.4.2 + "micEconSNQP" # depends on broken package nlopt-2.4.2 + "mi" # depends on broken package nlopt-2.4.2 + "migui" # depends on broken package nlopt-2.4.2 + "MineICA" # depends on broken package AnnotationForge-1.11.3 + "MinimumDistance" # depends on broken package affyio-1.37.0 + "missMDA" # depends on broken package nlopt-2.4.2 + "mitoODE" # build is broken + "mixAK" # depends on broken package nlopt-2.4.2 + "mixlm" # depends on broken package nlopt-2.4.2 + "MixMAP" # depends on broken package nlopt-2.4.2 + "mlmRev" # depends on broken package nlopt-2.4.2 + "MLP" # depends on broken package affyio-1.37.0 + "MLSeq" # depends on broken package nlopt-2.4.2 + "mlVAR" # depends on broken package nlopt-2.4.2 + "MMDiff" # depends on broken package AnnotationForge-1.11.3 + "MmPalateMiRNA" # depends on broken package affyio-1.37.0 + "mongolite" # build is broken + "monocle" # build is broken + "mosaic" # depends on broken package nlopt-2.4.2 + "MSGFgui" # depends on broken package MSGFplus-1.3.0 + "MSGFplus" # Build Is Broken + "msmsEDA" # depends on broken package affyio-1.37.0 + "msmsTests" # depends on broken package affyio-1.37.0 + "MSnbase" # depends on broken package affyio-1.37.0 + "MSnID" # depends on broken package affyio-1.37.0 + "MSstats" # depends on broken package nlopt-2.4.2 + "multiDimBio" # depends on broken package nlopt-2.4.2 + "MultiRR" # depends on broken package nlopt-2.4.2 + "muma" # depends on broken package nlopt-2.4.2 + "mutossGUI" # build is broken + "mvGST" # depends on broken package AnnotationForge-1.11.3 + "mvinfluence" # depends on broken package nlopt-2.4.2 + "mzR" # build is broken + "NanoStringQCPro" # build is broken + "nCal" # depends on broken package nlopt-2.4.2 + "ncdfFlow" # build is broken + "NCIgraph" # depends on broken package RCytoscape-1.19.0 + "netbenchmark" # build is broken + "NHPoisson" # depends on broken package nlopt-2.4.2 + "nloptr" # depends on broken package nlopt-2.4.2 + "nondetects" # depends on broken package affyio-1.37.0 + "nonrandom" # depends on broken package nlopt-2.4.2 + "NormqPCR" # depends on broken package affyio-1.37.0 + "NORRRM" # build is broken + "npIntFactRep" # depends on broken package nlopt-2.4.2 + "oligoClasses" # depends on broken package affyio-1.37.0 + "oligo" # depends on broken package affyio-1.37.0 + "OmicsMarkeR" # depends on broken package nlopt-2.4.2 + "oneChannelGUI" # depends on broken package affyio-1.37.0 + "OpenCL" # build is broken + "openCyto" # depends on broken package ncdfFlow-2.15.2 + "OpenMx" # build is broken + "OperaMate" # depends on broken package Category-2.35.1 + "ordBTL" # depends on broken package nlopt-2.4.2 + "OUwie" # depends on broken package nlopt-2.4.2 + "PADOG" # build is broken + "pamm" # depends on broken package nlopt-2.4.2 + "PANDA" # build is broken + "panelAR" # depends on broken package nlopt-2.4.2 + "panp" # depends on broken package affyio-1.37.0 + "papeR" # depends on broken package nlopt-2.4.2 + "parboost" # depends on broken package nlopt-2.4.2 + "parma" # depends on broken package nlopt-2.4.2 + "pathClass" # depends on broken package affyio-1.37.0 + "pathRender" # build is broken + "PatternClass" # build is broken + "Pbase" # depends on broken package affyio-1.37.0 + "pbdSLAP" # build is broken + "PBImisc" # depends on broken package nlopt-2.4.2 + "pbkrtest" # depends on broken package nlopt-2.4.2 + "PBSddesolve" # build is broken + "PBSmapping" # build is broken + "PCpheno" # depends on broken package Category-2.35.1 + "pdInfoBuilder" # depends on broken package affyio-1.37.0 + "pdmclass" # build is broken + "PECA" # depends on broken package affyio-1.37.0 + "pedigreemm" # depends on broken package nlopt-2.4.2 + "pedometrics" # depends on broken package nlopt-2.4.2 + "pequod" # depends on broken package nlopt-2.4.2 + "PGSEA" # depends on broken package annaffy-1.41.1 + "phenoDist" # depends on broken package Category-2.35.1 + "phenoTest" # depends on broken package Category-2.35.1 + "PhenStat" # depends on broken package nlopt-2.4.2 + "phia" # depends on broken package nlopt-2.4.2 + "phylocurve" # depends on broken package nlopt-2.4.2 + "phyloTop" # depends on broken package nlopt-2.4.2 + "plateCore" # depends on broken package ncdfFlow-2.15.2 + "plier" # depends on broken package affyio-1.37.0 + "plsRbeta" # depends on broken package nlopt-2.4.2 + "plsRcox" # depends on broken package nlopt-2.4.2 + "plsRglm" # depends on broken package nlopt-2.4.2 + "plw" # depends on broken package affyio-1.37.0 + "pmm" # depends on broken package nlopt-2.4.2 + "polytomous" # depends on broken package nlopt-2.4.2 + "pomp" # depends on broken package nlopt-2.4.2 + "ppiPre" # depends on broken package GOSemSim-1.27.3 + "ppiStats" # depends on broken package Category-2.35.1 + "prebs" # depends on broken package affyio-1.37.0 + "predictmeans" # depends on broken package nlopt-2.4.2 + "prLogistic" # depends on broken package nlopt-2.4.2 + "ProCoNA" # depends on broken package AnnotationForge-1.11.3 + "pRoloc" # depends on broken package nlopt-2.4.2 + "pRolocGUI" # depends on broken package nlopt-2.4.2 + "proteoQC" # depends on broken package affyio-1.37.0 + "PSAboot" # depends on broken package nlopt-2.4.2 + "puma" # depends on broken package affyio-1.37.0 + "pvac" # depends on broken package affyio-1.37.0 + "pvca" # depends on broken package nlopt-2.4.2 + "pwOmics" # depends on broken package interactiveDisplayBase-1.7.0 + "qcmetrics" # build is broken + "qgraph" # depends on broken package nlopt-2.4.2 + "qpcrNorm" # depends on broken package affyio-1.37.0 + "qtlnet" # depends on broken package nlopt-2.4.2 + "QUALIFIER" # depends on broken package ncdfFlow-2.15.2 + "quantification" # depends on broken package nlopt-2.4.2 + "R2STATS" # depends on broken package nlopt-2.4.2 + "radiant" # depends on broken package nlopt-2.4.2 + "raincpc" # build is broken + "rainfreq" # build is broken + "RamiGO" # depends on broken package RCytoscape-1.19.0 + "rasclass" # depends on broken package nlopt-2.4.2 + "RbioRXN" # depends on broken package ChemmineR-2.21.7 + "Rchemcpp" # depends on broken package ChemmineR-2.21.7 + "Rcmdr" # depends on broken package nlopt-2.4.2 + "RcmdrMisc" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_BCA" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_coin" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_depthTools" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_DoE" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_doex" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_EACSPIR" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_EBM" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_EcoVirtual" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_epack" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_EZR" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_FactoMineR" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_HH" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_IPSUR" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_KMggplot2" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_lfstat" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_MA" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_mosaic" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_MPAStats" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_NMBU" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_orloca" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_plotByGroup" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_pointG" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_qual" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_RMTCJags" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_ROC" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_sampling" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_SCDA" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_seeg" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_SLC" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_SM" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_sos" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_StatisticalURV" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_steepness" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_survival" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_TeachingDemos" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_temis" # depends on broken package nlopt-2.4.2 + "RcmdrPlugin_UCA" # depends on broken package nlopt-2.4.2 + "Rcpi" # depends on broken package ChemmineR-2.21.7 + "RcppOctave" # build is broken + "RcppRedis" # build is broken + "RCytoscape" # Build Is Broken + "RDAVIDWebService" # depends on broken package Category-2.35.1 + "rdd" # depends on broken package nlopt-2.4.2 + "RDieHarder" # build is broken + "ReactomePA" # depends on broken package GOSemSim-1.27.3 + "ReadqPCR" # depends on broken package affyio-1.37.0 + "referenceIntervals" # depends on broken package nlopt-2.4.2 + "RefNet" # depends on broken package interactiveDisplayBase-1.7.0 + "RefPlus" # depends on broken package affyio-1.37.0 + "refund" # depends on broken package nlopt-2.4.2 + "Repitools" # depends on broken package affyio-1.37.0 + "ReportingTools" # depends on broken package Category-2.35.1 + "REST" # depends on broken package nlopt-2.4.2 + "rgp" # build is broken + "rgsepd" # depends on broken package goseq-1.21.1 + "rhdf5" # build is broken + "rHVDM" # depends on broken package affyio-1.37.0 + "Ringo" # depends on broken package affyio-1.37.0 + "Risa" # depends on broken package affyio-1.37.0 + "rMAT" # build is broken + "rmgarch" # depends on broken package nlopt-2.4.2 + "rminer" # depends on broken package nlopt-2.4.2 + "RmiR" # Build Is Broken + "Rmosek" # build is broken + "RNAinteract" # depends on broken package Category-2.35.1 + "RNAither" # depends on broken package nlopt-2.4.2 + "RnavGraph" # build is broken + "Rnits" # depends on broken package affyio-1.37.0 + "RobLoxBioC" # depends on broken package affyio-1.37.0 + "robustlmm" # depends on broken package nlopt-2.4.2 + "rockchalk" # depends on broken package nlopt-2.4.2 + "rols" # build is broken + "RPA" # depends on broken package affyio-1.37.0 + "rpanel" # build is broken + "rpubchem" # depends on broken package nlopt-2.4.2 + "RQuantLib" # build is broken + "rr" # depends on broken package nlopt-2.4.2 + "RSAP" # build is broken + "rsbml" # build is broken + "rscala" # build is broken + "RSDA" # depends on broken package nlopt-2.4.2 + "Rsubread" # Build Is Broken + "Rsymphony" # build is broken + "rTANDEM" # build is broken + "RTN" # depends on broken package nlopt-2.4.2 + "rugarch" # depends on broken package nlopt-2.4.2 + "RUVcorr" # build is broken + "RUVnormalize" # Build Is Broken + "RVAideMemoire" # depends on broken package nlopt-2.4.2 + "RVFam" # depends on broken package nlopt-2.4.2 + "ryouready" # depends on broken package nlopt-2.4.2 + "sampleSelection" # depends on broken package nlopt-2.4.2 + "SCAN_UPC" # depends on broken package affyio-1.37.0 + "ScISI" # depends on broken package apComplex-2.35.0 + "sdcMicro" # depends on broken package nlopt-2.4.2 + "sdcMicroGUI" # depends on broken package nlopt-2.4.2 + "seeg" # depends on broken package nlopt-2.4.2 + "sem" # depends on broken package nlopt-2.4.2 + "semdiag" # depends on broken package nlopt-2.4.2 + "SemDist" # Build Is Broken + "semGOF" # depends on broken package nlopt-2.4.2 + "semPlot" # depends on broken package nlopt-2.4.2 + "SensoMineR" # depends on broken package nlopt-2.4.2 + "SEPA" # depends on broken package topGO-2.21.0 + "seqTools" # build is broken + "SimBindProfiles" # depends on broken package affyio-1.37.0 + "simpleaffy" # depends on broken package affyio-1.37.0 + "sirt" # depends on broken package nlopt-2.4.2 + "sjPlot" # depends on broken package nlopt-2.4.2 + "skewr" # depends on broken package affyio-1.37.0 + "SLGI" # depends on broken package apComplex-2.35.0 + "SNAGEE" # build is broken + "snapCGH" # depends on broken package tilingArray-1.47.0 + "snm" # depends on broken package nlopt-2.4.2 + "SNPchip" # depends on broken package affyio-1.37.0 + "snpEnrichment" # depends on broken package snpStats-1.19.0 + "snpStats" # build is broken + "snpStatsWriter" # depends on broken package snpStats-1.19.0 + "SOD" # depends on broken package cudatoolkit-5.5.22 + "spacom" # depends on broken package nlopt-2.4.2 + "specificity" # depends on broken package nlopt-2.4.2 + "sscore" # depends on broken package affyio-1.37.0 + "ssmrob" # depends on broken package nlopt-2.4.2 + "staRank" # depends on broken package Category-2.35.1 + "Starr" # depends on broken package affyio-1.37.0 + "STATegRa" # depends on broken package affyio-1.37.0 + "stcm" # depends on broken package nlopt-2.4.2 + "stepp" # depends on broken package nlopt-2.4.2 + "stringgaussnet" # build is broken + "Surrogate" # depends on broken package nlopt-2.4.2 + "synapter" # depends on broken package affyio-1.37.0 + "systemfit" # depends on broken package nlopt-2.4.2 + "systemPipeR" # depends on broken package AnnotationForge-1.11.3 + "TcGSA" # depends on broken package nlopt-2.4.2 + "TDMR" # depends on broken package nlopt-2.4.2 + "TFBSTools" # depends on broken package DirichletMultinomial-1.11.1 + "tigerstats" # depends on broken package nlopt-2.4.2 + "tilingArray" # depends on broken package affyio-1.37.0 + "topGO" # build is broken + "tRanslatome" # depends on broken package GOSemSim-1.27.3 + "TriMatch" # depends on broken package nlopt-2.4.2 + "TROM" # depends on broken package topGO-2.21.0 + "TurboNorm" # depends on broken package affyio-1.37.0 + "unifiedWMWqPCR" # depends on broken package affyio-1.37.0 + "userfriendlyscience" # depends on broken package nlopt-2.4.2 + "V8" # build is broken + "VanillaICE" # depends on broken package affyio-1.37.0 + "VIM" # depends on broken package nlopt-2.4.2 + "VIMGUI" # depends on broken package nlopt-2.4.2 + "vows" # depends on broken package nlopt-2.4.2 + "vsn" # depends on broken package affyio-1.37.0 + "vtpnet" # depends on broken package interactiveDisplayBase-1.7.0 + "wateRmelon" # depends on broken package affyio-1.37.0 + "waveTiling" # depends on broken package affyio-1.37.0 + "webbioc" # depends on broken package affyio-1.37.0 + "wfe" # depends on broken package nlopt-2.4.2 + "WGCNA" # build is broken + "wgsea" # depends on broken package snpStats-1.19.0 + "WideLM" # depends on broken package cudatoolkit-5.5.22 + "xergm" # depends on broken package nlopt-2.4.2 + "xps" # build is broken + "yaqcaffy" # depends on broken package affyio-1.37.0 + "ZeligMultilevel" # depends on broken package nlopt-2.4.2 + "zetadiv" # depends on broken package nlopt-2.4.2 ]; otherOverrides = old: new: { xml2 = old.xml2.overrideDerivation (attrs: { - preConfigure = '' - export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2 - export LIBXML_LIBDIR=${pkgs.libxml2}/lib - ''; + preConfigure = "export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2"; }); curl = old.curl.overrideDerivation (attrs: { - preConfigure = "export CURL_INCLUDES=${pkgs.curl}/include/curl"; + preConfigure = "export CURL_INCLUDES=${pkgs.curl}/include"; }); iFes = old.iFes.overrideDerivation (attrs: { @@ -997,7 +1544,7 @@ let }); Mposterior = old.Mposterior.overrideDerivation (attrs: { - PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas"; + PKG_LIBS = "-L${pkgs.openblasCompat}/lib -lopenblas"; }); qtbase = old.qtbase.overrideDerivation (attrs: { @@ -1037,11 +1584,11 @@ let }); slfm = old.slfm.overrideDerivation (attrs: { - PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas"; + PKG_LIBS = "-L${pkgs.openblasCompat}/lib -lopenblas"; }); SamplerCompare = old.SamplerCompare.overrideDerivation (attrs: { - PKG_LIBS = "-L${pkgs.atlas}/lib -lf77blas -latlas"; + PKG_LIBS = "-L${pkgs.openblasCompat}/lib -lopenblas"; }); gputools = old.gputools.overrideDerivation (attrs: { @@ -1087,6 +1634,7 @@ let BayesLogit = old.BayesLogit.overrideDerivation (attrs: { patches = [ ./patches/BayesLogit.patch ]; + buildInputs = (attrs.buildInputs or []) ++ [ pkgs.openblasCompat ]; }); BayesBridge = old.BayesBridge.overrideDerivation (attrs: { @@ -1111,6 +1659,10 @@ let ]; }); + V8 = old.V8.overrideDerivation (attrs: { + preConfigure = "export V8_INCLUDES=${pkgs.v8}/include"; + }); + }; in self diff --git a/pkgs/development/r-modules/generate-cran-packages.R b/pkgs/development/r-modules/generate-cran-packages.R deleted file mode 100644 index 3510a2fa92ce..000000000000 --- a/pkgs/development/r-modules/generate-cran-packages.R +++ /dev/null @@ -1,48 +0,0 @@ -library(data.table) -library(parallel) -cl <- makeCluster(10) -options(repos=structure(c(CRAN="http://cran.rstudio.com/"))) - - -readFormatted <- as.data.table(read.table(skip=6, sep='"', text=head(readLines('cran-packages.nix'), -1))) - -nixPrefetch <- function(name, version) { - prevV <- readFormatted$V2 == name & readFormatted$V4 == version - if (sum(prevV) == 1) as.character(readFormatted$V6[ prevV ]) else - system(paste0("nix-prefetch-url --type sha256 http://cran.rstudio.com/src/contrib/", name, "_", version, ".tar.gz"), intern=TRUE) - # system(paste0("nix-hash --flat --base32 --type sha256 /nix/store/*", name, "_", version, ".tar.gz", "| head -n 1"), intern=TRUE) -} - -formatPackage <- function(name, version, sha256, depends, imports, linkingTo, knownPackages) { - attr <- gsub(".", "_", name, fixed=TRUE) - if (is.na(depends)) depends <- ""; - depends <- unlist(strsplit(depends, split="[ \t\n]*,[ \t\n]*", fixed=FALSE)) - depends <- c(depends, unlist(strsplit(imports, split="[ \t\n]*,[ \t\n]*", fixed=FALSE))) - depends <- c(depends, unlist(strsplit(linkingTo, split="[ \t\n]*,[ \t\n]*", fixed=FALSE))) - depends <- sapply(depends, gsub, pattern="([^ \t\n(]+).*", replacement="\\1") - depends <- depends[depends %in% knownPackages] - depends <- sapply(depends, gsub, pattern=".", replacement="_", fixed=TRUE) - depends <- paste(depends, collapse=" ") - paste0(attr, " = derive { name=\"", name, "\"; version=\"", version, "\"; sha256=\"", sha256, "\"; depends=[", depends, "]; };") -} - -clusterExport(cl, c("nixPrefetch","readFormatted")) - -pkgs <- as.data.table(available.packages(filters=c("R_version", "OS_type", "CRAN", "duplicates"))) -pkgs <- subset(pkgs, Repository=="http://cran.rstudio.com/src/contrib") -pkgs <- pkgs[order(Package)] -pkgs$sha256 <- parApply(cl, pkgs, 1, function(p) nixPrefetch(p[1], p[2])) -knownPackages <- unique(pkgs$Package) - -nix <- apply(pkgs, 1, function(p) formatPackage(p[1], p[2], p[18], p[4], p[5], p[6], knownPackages)) - -cat("# This file is generated from generate-cran-packages.R. DO NOT EDIT.\n") -cat("# Execute the following command to update the file.\n") -cat("#\n") -cat("# Rscript generate-cran-packages.R > cran-packages.nix\n") -cat("\n") -cat("{ self, derive }: with self; {\n") -cat(paste(nix, collapse="\n"), "\n") -cat("}\n") - -stopCluster(cl) diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R new file mode 100755 index 000000000000..d78845796375 --- /dev/null +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -0,0 +1,61 @@ +#!/usr/bin/env Rscript + +library(data.table) +library(parallel) +cl <- makeCluster(10) + +mirrorType <- commandArgs(trailingOnly=TRUE)[1] +stopifnot(mirrorType %in% c("bioc","cran")) + +packagesFile <- paste(mirrorType, 'packages.nix', sep='-') +readFormatted <- as.data.table(read.table(skip=6, sep='"', text=head(readLines(packagesFile), -1))) + +mirrorUrls <- list( bioc="http://bioconductor.statistik.tu-dortmund.de/packages/3.2/bioc/src/contrib/" + , cran="http://cran.r-project.org/src/contrib/" + ) +mirrorUrl <- mirrorUrls[mirrorType][[1]] +knownPackages <- lapply(mirrorUrls, function(url) as.data.table(available.packages(url, filters=c("R_version", "OS_type", "duplicates")))) +pkgs <- knownPackages[mirrorType][[1]] +setkey(pkgs, Package) +knownPackages <- c(unique(do.call("rbind", knownPackages)$Package)) +knownPackages <- sapply(knownPackages, gsub, pattern=".", replacement="_", fixed=TRUE) + +nixPrefetch <- function(name, version) { + prevV <- readFormatted$V2 == name & readFormatted$V4 == version + if (sum(prevV) == 1) as.character(readFormatted$V6[ prevV ]) else + system(paste0("nix-prefetch-url --type sha256 ", mirrorUrl, name, "_", version, ".tar.gz"), intern=TRUE) +} + +formatPackage <- function(name, version, sha256, depends, imports, linkingTo) { + attr <- gsub(".", "_", name, fixed=TRUE) + depends <- paste( if (is.na(depends)) "" else gsub("[ \t\n]+", "", depends) + , if (is.na(imports)) "" else gsub("[ \t\n]+", "", imports) + , if (is.na(linkingTo)) "" else gsub("[ \t\n]+", "", linkingTo) + , sep="," + ) + depends <- unlist(strsplit(depends, split=",", fixed=TRUE)) + depends <- sapply(depends, gsub, pattern="([^ \t\n(]+).*", replacement="\\1") + depends <- sapply(depends, gsub, pattern=".", replacement="_", fixed=TRUE) + depends <- depends[depends %in% knownPackages] + depends <- paste(sort(unique(depends)), collapse=" ") + paste0(attr, " = derive { name=\"", name, "\"; version=\"", version, "\"; sha256=\"", sha256, "\"; depends=[", depends, "]; };") +} + +clusterExport(cl, c("nixPrefetch","readFormatted", "mirrorUrl", "knownPackages")) + +pkgs <- as.data.table(available.packages(mirrorUrl, filters=c("R_version", "OS_type", "duplicates"))) +pkgs <- pkgs[order(Package)] +pkgs$sha256 <- parApply(cl, pkgs, 1, function(p) nixPrefetch(p[1], p[2])) + +nix <- apply(pkgs, 1, function(p) formatPackage(p[1], p[2], p[18], p[4], p[5], p[6])) + +cat("# This file is generated from generate-r-packages.R. DO NOT EDIT.\n") +cat("# Execute the following command to update the file.\n") +cat("#\n") +cat(paste("# Rscript generate-r-packages.R", mirrorType, ">new && mv new", packagesFile)) +cat("\n\n") +cat("{ self, derive }: with self; {\n") +cat(paste(nix, collapse="\n"), "\n") +cat("}\n") + +stopCluster(cl) diff --git a/pkgs/development/r-modules/patches/BayesLogit_cblas.patch b/pkgs/development/r-modules/patches/BayesLogit_cblas.patch index 4c8778c46976..ef776f3531da 100644 --- a/pkgs/development/r-modules/patches/BayesLogit_cblas.patch +++ b/pkgs/development/r-modules/patches/BayesLogit_cblas.patch @@ -6,7 +6,7 @@ diff -ru -x '*~' BayesLogit_orig/src/Makevars BayesLogit/src/Makevars OBJECTS = Matrix.o MatrixFrame.o RRNG.o RNG.o FSF_nmix.o LogitWrapper.o \ PolyaGamma.o PolyaGammaAlt.o PolyaGammaSP.o InvertY.o -PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) -+PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) -llapack -lf77blas -lcblas -latlas -lgfortran ++PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) -lopenblas # PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW -Wall -pedantic -Wextra PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW diff --git a/pkgs/development/r-modules/test-evaluation.nix b/pkgs/development/r-modules/test-evaluation.nix new file mode 100644 index 000000000000..2ca0d42c6db4 --- /dev/null +++ b/pkgs/development/r-modules/test-evaluation.nix @@ -0,0 +1,21 @@ +# Run +# +# nix-build test-evaluation.nix --dry-run +# +# to test whether the R package set evaluates properly. + +let + + config = { + allowBroken = true; + allowUnfree = true; + }; + + inherit (import ../../.. { inherit config; }) pkgs; + + rWrapper = pkgs.rWrapper.override { + packages = pkgs.lib.filter pkgs.lib.isDerivation (pkgs.lib.attrValues pkgs.rPackages); + }; + +in + rWrapper diff --git a/pkgs/development/tools/analysis/coan/default.nix b/pkgs/development/tools/analysis/coan/default.nix index ce9b8a9a59d6..dd550064e263 100644 --- a/pkgs/development/tools/analysis/coan/default.nix +++ b/pkgs/development/tools/analysis/coan/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "1d041j0nd1hc0562lbj269dydjm4rbzagdgzdnmwdxr98544yw44"; }; - buildInputs = [ perl ]; + nativeBuildInputs = [ perl ]; enableParallelBuilding = true; diff --git a/pkgs/development/tools/analysis/frama-c/default.nix b/pkgs/development/tools/analysis/frama-c/default.nix index b7c71475d6c5..2132d1e19b47 100644 --- a/pkgs/development/tools/analysis/frama-c/default.nix +++ b/pkgs/development/tools/analysis/frama-c/default.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://frama-c.com/download/frama-c-${slang}-${version}.tar.gz"; - sha256 = "0wackacnnpxnh3612ld68bal8b1dm9cdsi180lw42bsyks03h5mn"; + sha256 = "0zask160vj8bxgc07dzxj5hqbdp6gz5g00j6za5397961imxhxaq"; }; why2 = fetchurl { diff --git a/pkgs/development/tools/analysis/include-what-you-use/default.nix b/pkgs/development/tools/analysis/include-what-you-use/default.nix index 9a8df0f46901..36164bffebf9 100644 --- a/pkgs/development/tools/analysis/include-what-you-use/default.nix +++ b/pkgs/development/tools/analysis/include-what-you-use/default.nix @@ -1,11 +1,13 @@ -{ stdenv, fetchurl, cmake, llvmPackages_35 }: +{ stdenv, fetchurl, cmake, llvmPackages_36 }: -let version = "3.5"; in with llvmPackages_35; -stdenv.mkDerivation rec { +let + version = "0.4"; + llvmPackages = llvmPackages_36; +in stdenv.mkDerivation rec { name = "include-what-you-use-${version}"; src = fetchurl { - sha256 = "1wfl78wkg8m2ssjnkb2rwcqy35nhc8fa63mk3sa60jrshpy7b15w"; + sha256 = "19pwhgwvfr86n8ks099p9r02v7zh8d3qs7g7snzkhpdgq1azww85"; url = "${meta.homepage}/downloads/${name}.src.tar.gz"; }; @@ -19,14 +21,16 @@ stdenv.mkDerivation rec { actually needed for this file (for both .cc and .h files), and by replacing #includes with forward-declares when possible. ''; - homepage = http://include-what-you-use.com; + homepage = http://include-what-you-use.org; license = licenses.bsd3; platforms = with platforms; linux; maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ clang cmake llvm ]; + buildInputs = with llvmPackages; [ clang llvm ]; + nativeBuildInputs = [ cmake ]; + + cmakeFlags = "-DIWYU_LLVM_ROOT_PATH=${llvmPackages.clang-unwrapped}"; - cmakeFlags = [ "-DLLVM_PATH=${llvm}" ]; enableParallelBuilding = true; } diff --git a/pkgs/development/tools/build-managers/cmake/3.2.2-cygwin.patch b/pkgs/development/tools/build-managers/cmake/3.2.2-cygwin.patch new file mode 100644 index 000000000000..982aba17e874 --- /dev/null +++ b/pkgs/development/tools/build-managers/cmake/3.2.2-cygwin.patch @@ -0,0 +1,274 @@ +--- cmake-3.2.2/Source/cmFileCommand.cxx 2015-04-13 19:09:00.000000000 +0200 ++++ cmake-3.2.2/Source/ccmFileCommand.cxx 2015-06-10 11:02:27.345598700 +0200 +@@ -1179,7 +1179,7 @@ + MatchProperties CollectMatchProperties(const char* file) + { + // Match rules are case-insensitive on some platforms. +-#if defined(_WIN32) || defined(__APPLE__) || defined(__CYGWIN__) ++#if defined(_WIN32) || defined(__APPLE__) + std::string lower = cmSystemTools::LowerCase(file); + const char* file_to_match = lower.c_str(); + #else +--- cmake-3.2.2/Source/cmInstallCommand.cxx 2015-04-13 19:09:00.000000000 +0200 ++++ cmake-3.2.2/Source/cmInstallCommand.cxx 2015-06-10 11:04:19.257935200 +0200 +@@ -1138,7 +1138,7 @@ + { + literal_args += " REGEX \""; + // Match rules are case-insensitive on some platforms. +-#if defined(_WIN32) || defined(__APPLE__) || defined(__CYGWIN__) ++#if defined(_WIN32) || defined(__APPLE__) + std::string regex = cmSystemTools::LowerCase(args[i]); + #else + std::string regex = args[i]; +--- cmake-3.2.2/Source/kwsys/Glob.cxx 2015-04-13 19:09:00.000000000 +0200 ++++ cmake-3.2.2/Source/kwsys/Glob.cxx 2015-06-10 11:05:51.602674000 +0200 +@@ -37,7 +37,7 @@ + #include <string.h> + namespace KWSYS_NAMESPACE + { +-#if defined(_WIN32) || defined(__APPLE__) || defined(__CYGWIN__) ++#if defined(_WIN32) || defined(__APPLE__) + // On Windows and apple, no difference between lower and upper case + # define KWSYS_GLOB_CASE_INDEPENDENT + #endif +--- cmake-3.2.2/Source/kwsys/SystemInformation.cxx 2015-04-13 19:09:00.000000000 +0200 ++++ cmake-3.2.2/Source/kwsys/SystemInformation.cxx 2015-06-10 11:13:00.308303500 +0200 +@@ -911,7 +911,7 @@ + // Hide implementation details in an anonymous namespace. + namespace { + // ***************************************************************************** +-#if defined(__linux) || defined(__APPLE__) ++#if defined(__linux) || defined(__APPLE__) || defined(__CYGWIN__) + int LoadLines( + FILE *file, + kwsys_stl::vector<kwsys_stl::string> &lines) +@@ -947,7 +947,7 @@ + return nRead; + } + +-# if defined(__linux) ++# if defined(__linux) || defined(__CYGWIN__) + // ***************************************************************************** + int LoadLines( + const char *fileName, +@@ -986,7 +986,7 @@ + } + #endif + +-#if defined(__linux) ++#if defined(__linux) || defined(__CYGWIN__) + // **************************************************************************** + template<typename T> + int GetFieldsFromFile( +@@ -3132,7 +3132,6 @@ + pos = buffer.find("processor\t",pos+1); + } + +-#ifdef __linux + // Find the largest physical id. + int maxId = -1; + kwsys_stl::string idc = +@@ -3165,14 +3164,6 @@ + atoi(this->ExtractValueFromCpuInfoFile(buffer,"ncpus active").c_str()); + } + +-#else // __CYGWIN__ +- // does not have "physical id" entries, neither "cpu cores" +- // this has to be fixed for hyper-threading. +- kwsys_stl::string cpucount = +- this->ExtractValueFromCpuInfoFile(buffer,"cpu count"); +- this->NumberOfPhysicalCPU= +- this->NumberOfLogicalCPU = atoi(cpucount.c_str()); +-#endif + // gotta have one, and if this is 0 then we get a / by 0n + // better to have a bad answer than a crash + if(this->NumberOfPhysicalCPU <= 0) +@@ -3370,7 +3361,7 @@ + GlobalMemoryStatusEx(&statex); + return statex.ullTotalPhys/1024; + # endif +-#elif defined(__linux) ++#elif defined(__linux) || defined(__CYGWIN__) + SystemInformation::LongLong memTotal=0; + int ierr=GetFieldFromFile("/proc/meminfo","MemTotal:",memTotal); + if (ierr) +@@ -3501,7 +3492,7 @@ + GlobalMemoryStatusEx(&statex); + return (statex.ullTotalPhys - statex.ullAvailPhys)/1024; + # endif +-#elif defined(__linux) ++#elif defined(__linux) || defined(__CYGWIN__) + const char *names[3]={"MemTotal:","MemFree:",NULL}; + SystemInformation::LongLong values[2]={SystemInformation::LongLong(0)}; + int ierr=GetFieldsFromFile("/proc/meminfo",names,values); +@@ -3560,7 +3551,7 @@ + return -2; + } + return pmc.WorkingSetSize/1024; +-#elif defined(__linux) ++#elif defined(__linux) || defined(__CYGWIN__) + SystemInformation::LongLong memUsed=0; + int ierr=GetFieldFromFile("/proc/self/status","VmRSS:",memUsed); + if (ierr) +@@ -3612,7 +3603,7 @@ + { + #if defined(_WIN32) + return GetCurrentProcessId(); +-#elif defined(__linux) || defined(__APPLE__) ++#elif defined(__linux) || defined(__APPLE__) || defined(__CYGWIN__) + return getpid(); + #else + return -1; +--- cmake-3.2.2/Source/kwsys/SystemTools.cxx 2015-04-13 19:09:00.000000000 +0200 ++++ cmake-3.2.2/Source/kwsys/SystemTools.cxx 2015-06-10 11:21:58.980443200 +0200 +@@ -93,19 +93,12 @@ + # if defined(_MSC_VER) && _MSC_VER >= 1800 + # define KWSYS_WINDOWS_DEPRECATED_GetVersionEx + # endif +-#elif defined (__CYGWIN__) +-# include <windows.h> +-# undef _WIN32 + #endif + + #if !KWSYS_CXX_HAS_ENVIRON_IN_STDLIB_H + extern char **environ; + #endif + +-#ifdef __CYGWIN__ +-# include <sys/cygwin.h> +-#endif +- + // getpwnam doesn't exist on Windows and Cray Xt3/Catamount + // same for TIOCGWINSZ + #if defined(_WIN32) || defined (__LIBCATAMOUNT__) +@@ -1148,15 +1141,7 @@ + { + return false; + } +-#if defined(__CYGWIN__) +- // Convert filename to native windows path if possible. +- char winpath[MAX_PATH]; +- if(SystemTools::PathCygwinToWin32(filename.c_str(), winpath)) +- { +- return (GetFileAttributesA(winpath) != INVALID_FILE_ATTRIBUTES); +- } +- return access(filename.c_str(), R_OK) == 0; +-#elif defined(_WIN32) ++#if defined(_WIN32) + return (GetFileAttributesW( + SystemTools::ConvertToWindowsExtendedPath(filename).c_str()) + != INVALID_FILE_ATTRIBUTES); +@@ -1190,28 +1175,6 @@ + } + + //---------------------------------------------------------------------------- +-#ifdef __CYGWIN__ +-bool SystemTools::PathCygwinToWin32(const char *path, char *win32_path) +-{ +- SystemToolsTranslationMap::iterator i = +- SystemTools::Cyg2Win32Map->find(path); +- +- if (i != SystemTools::Cyg2Win32Map->end()) +- { +- strncpy(win32_path, i->second.c_str(), MAX_PATH); +- } +- else +- { +- if(cygwin_conv_path(CCP_POSIX_TO_WIN_A, path, win32_path, MAX_PATH) != 0) +- { +- win32_path[0] = 0; +- } +- SystemToolsTranslationMap::value_type entry(path, win32_path); +- SystemTools::Cyg2Win32Map->insert(entry); +- } +- return win32_path[0] != 0; +-} +-#endif + + bool SystemTools::Touch(const kwsys_stl::string& filename, bool create) + { +@@ -4307,7 +4270,7 @@ + + bool SystemTools::FileIsFullPath(const char* in_name, size_t len) + { +-#if defined(_WIN32) || defined(__CYGWIN__) ++#if defined(_WIN32) + // On Windows, the name must be at least two characters long. + if(len < 2) + { +@@ -5078,9 +5041,6 @@ + static unsigned int SystemToolsManagerCount; + SystemToolsTranslationMap *SystemTools::TranslationMap; + SystemToolsTranslationMap *SystemTools::LongPathMap; +-#ifdef __CYGWIN__ +-SystemToolsTranslationMap *SystemTools::Cyg2Win32Map; +-#endif + + // SystemToolsManager manages the SystemTools singleton. + // SystemToolsManager should be included in any translation unit +@@ -5126,9 +5086,6 @@ + // Allocate the translation map first. + SystemTools::TranslationMap = new SystemToolsTranslationMap; + SystemTools::LongPathMap = new SystemToolsTranslationMap; +-#ifdef __CYGWIN__ +- SystemTools::Cyg2Win32Map = new SystemToolsTranslationMap; +-#endif + + // Add some special translation paths for unix. These are not added + // for windows because drive letters need to be maintained. Also, +@@ -5183,9 +5140,6 @@ + { + delete SystemTools::TranslationMap; + delete SystemTools::LongPathMap; +-#ifdef __CYGWIN__ +- delete SystemTools::Cyg2Win32Map; +-#endif + } + + +--- cmake-3.2.2/Source/kwsys/SystemTools.hxx.in 2015-04-13 19:09:00.000000000 +0200 ++++ cmake-3.2.2/Source/kwsys/SystemTools.hxx.in 2015-06-10 11:24:24.271286600 +0200 +@@ -298,15 +298,6 @@ + static bool FileExists(const kwsys_stl::string& filename); + + /** +- * Converts Cygwin path to Win32 path. Uses dictionary container for +- * caching and calls to cygwin_conv_to_win32_path from Cygwin dll +- * for actual translation. Returns true on success, else false. +- */ +-#ifdef __CYGWIN__ +- static bool PathCygwinToWin32(const char *path, char *win32_path); +-#endif +- +- /** + * Return file length + */ + static unsigned long FileLength(const kwsys_stl::string& filename); +@@ -942,9 +933,6 @@ + */ + static SystemToolsTranslationMap *TranslationMap; + static SystemToolsTranslationMap *LongPathMap; +-#ifdef __CYGWIN__ +- static SystemToolsTranslationMap *Cyg2Win32Map; +-#endif + friend class SystemToolsManager; + }; + +--- cmake-3.2.2/Modules/FindCurses.cmake 2015-04-13 19:09:00.000000000 +0200 ++++ cmake-3.2.2/Modules/FindCurses.cmake 2015-06-10 12:10:19.682030300 +0200 +@@ -60,15 +60,6 @@ + if(CURSES_NCURSES_LIBRARY AND ((NOT CURSES_CURSES_LIBRARY) OR CURSES_NEED_NCURSES)) + set(CURSES_USE_NCURSES TRUE) + endif() +-# http://cygwin.com/ml/cygwin-announce/2010-01/msg00002.html +-# cygwin ncurses stopped providing curses.h symlinks see above +-# message. Cygwin is an ncurses package, so force ncurses on +-# cygwin if the curses.h is missing +-if(CYGWIN) +- if(NOT EXISTS /usr/include/curses.h) +- set(CURSES_USE_NCURSES TRUE) +- endif() +-endif() + + + # Not sure the logic is correct here. diff --git a/pkgs/development/tools/build-managers/cmake/default.nix b/pkgs/development/tools/build-managers/cmake/default.nix index 9f2ed0a73524..8cdf231729f4 100644 --- a/pkgs/development/tools/build-managers/cmake/default.nix +++ b/pkgs/development/tools/build-managers/cmake/default.nix @@ -36,11 +36,11 @@ stdenv.mkDerivation rec { url = "http://public.kitware.com/Bug/file_download.php?" + "file_id=4981&type=bug"; sha256 = "16acmdr27adma7gs9rs0dxdiqppm15vl3vv3agy7y8s94wyh4ybv"; - }) ++ stdenv.lib.optional stdenv.isCygwin ./2.8.11-cygwin.patch; + }) ++ stdenv.lib.optional stdenv.isCygwin ./3.2.2-cygwin.patch; buildInputs = [ bzip2 curl expat libarchive xz zlib ] - ++ optional (jsoncpp != null) jsoncpp + ++ optional (jsoncpp != null && !stdenv.isCygwin) jsoncpp ++ optional useNcurses ncurses ++ optional useQt4 qt4; @@ -54,7 +54,7 @@ stdenv.mkDerivation rec { "--mandir=/share/man" ] ++ optional (!stdenv.isCygwin) "--system-libs" - ++ optional (jsoncpp == null) "--no-system-jsoncpp" + ++ optional (jsoncpp == null || stdenv.isCygwin) "--no-system-jsoncpp" ++ optional useQt4 "--qt-gui" ++ ["--"] ++ optional (!useNcurses) "-DBUILD_CursesDialog=OFF"; diff --git a/pkgs/development/tools/haskell/ihaskell/wrapper.nix b/pkgs/development/tools/haskell/ihaskell/wrapper.nix index 035ad738a824..c00f46577a80 100644 --- a/pkgs/development/tools/haskell/ihaskell/wrapper.nix +++ b/pkgs/development/tools/haskell/ihaskell/wrapper.nix @@ -7,7 +7,7 @@ let self.ihaskell-display ] ++ packages self); ihaskellSh = writeScriptBin "ihaskell-notebook" '' - #!/bin/sh + #! ${stdenv.shell} export GHC_PACKAGE_PATH="$(echo ${ihaskellEnv}/lib/*/package.conf.d| tr ' ' ':'):$GHC_PACKAGE_PATH" export PATH="${ihaskell}/bin:${ihaskellEnv}/bin:${ipython}/bin" ${ihaskell}/bin/ihaskell install -l $(${ihaskellEnv}/bin/ghc --print-libdir) && ${ipython}/bin/ipython notebook --kernel=haskell diff --git a/pkgs/development/tools/misc/cl-launch/default.nix b/pkgs/development/tools/misc/cl-launch/default.nix index 755e8001e881..40c4085adab4 100644 --- a/pkgs/development/tools/misc/cl-launch/default.nix +++ b/pkgs/development/tools/misc/cl-launch/default.nix @@ -3,11 +3,11 @@ let s = # Generated upstream information rec { baseName="cl-launch"; - version="4.1.3.1"; + version="4.1.3.3"; name="${baseName}-${version}"; - hash="0l5iwffrzmaxbpfh2h5y8lz6yap3q8xi14z080lhl193p8f3rk0z"; - url="http://common-lisp.net/project/xcvb/cl-launch/cl-launch-4.1.3.1.tar.gz"; - sha256="0l5iwffrzmaxbpfh2h5y8lz6yap3q8xi14z080lhl193p8f3rk0z"; + hash="1al7jrj4fy9w4lpgizgb1ppk4rhhlcrfkz1yxpjv3w0wij1h67zl"; + url="http://common-lisp.net/project/xcvb/cl-launch/cl-launch-4.1.3.3.tar.gz"; + sha256="1al7jrj4fy9w4lpgizgb1ppk4rhhlcrfkz1yxpjv3w0wij1h67zl"; }; buildInputs = [ ]; diff --git a/pkgs/development/tools/misc/global/default.nix b/pkgs/development/tools/misc/global/default.nix index 0fa547097885..13903b4c7b9b 100644 --- a/pkgs/development/tools/misc/global/default.nix +++ b/pkgs/development/tools/misc/global/default.nix @@ -3,11 +3,11 @@ }: stdenv.mkDerivation rec { - name = "global-6.4"; + name = "global-6.5"; src = fetchurl { url = "mirror://gnu/global/${name}.tar.gz"; - sha256 = "13i4zwx6gaibc4j79wd0hgxysw8ibxz9c018zxhydnxlyadzcnri"; + sha256 = "1af6lhwhrpdnigd3707fnk3dd6y53pbc4g0i75xjf0563bdi5zaa"; }; nativeBuildInputs = [ libtool makeWrapper ]; diff --git a/pkgs/development/tools/misc/intel-gpu-tools/compile-fix.patch b/pkgs/development/tools/misc/intel-gpu-tools/compile-fix.patch deleted file mode 100644 index 8285867d8eda..000000000000 --- a/pkgs/development/tools/misc/intel-gpu-tools/compile-fix.patch +++ /dev/null @@ -1,37 +0,0 @@ -From 233808a58db1f62d773b03f9dad599924170aca6 Mon Sep 17 00:00:00 2001 -From: Chris Wilson <chris@chris-wilson.co.uk> -Date: Wed, 18 Mar 2015 08:36:37 +0000 -Subject: lib/batch: Trivial compile fix for 32-bit builds - -intel_batchbuffer.c: In function 'fill_object': -intel_batchbuffer.c:589:20: error: cast from pointer to integer of different size [-Werror=pointer-to-int-cast] - obj->relocs_ptr = (uint64_t)relocs; - ^ -intel_batchbuffer.c: In function 'exec_blit': -intel_batchbuffer.c:598:21: error: cast from pointer to integer of different size [-Werror=pointer-to-int-cast] - exec.buffers_ptr = (uint64_t)objs; - -Signed-off-by: Chris Wilson <chris@chris-wilson.co.uk> - -diff --git a/lib/intel_batchbuffer.c b/lib/intel_batchbuffer.c -index 666c323..c1c27a6 100644 ---- a/lib/intel_batchbuffer.c -+++ b/lib/intel_batchbuffer.c -@@ -548,7 +548,7 @@ fill_object(struct drm_i915_gem_exec_object2 *obj, uint32_t gem_handle, - memset(obj, 0, sizeof(*obj)); - obj->handle = gem_handle; - obj->relocation_count = count; -- obj->relocs_ptr = (uint64_t)relocs; -+ obj->relocs_ptr = (uintptr_t)relocs; - } - - static void exec_blit(int fd, -@@ -557,7 +557,7 @@ static void exec_blit(int fd, - { - struct drm_i915_gem_execbuffer2 exec; - -- exec.buffers_ptr = (uint64_t)objs; -+ exec.buffers_ptr = (uintptr_t)objs; - exec.buffer_count = count; - exec.batch_start_offset = 0; - exec.batch_len = batch_len * 4; diff --git a/pkgs/development/tools/misc/intel-gpu-tools/default.nix b/pkgs/development/tools/misc/intel-gpu-tools/default.nix index 997f1bfc0120..b675565d0539 100644 --- a/pkgs/development/tools/misc/intel-gpu-tools/default.nix +++ b/pkgs/development/tools/misc/intel-gpu-tools/default.nix @@ -1,16 +1,16 @@ -{ stdenv, fetchurl, pkgconfig, libdrm, libpciaccess, cairo, dri2proto, udev, libX11, libXext, libXv, libXrandr, glib, bison }: +{ stdenv, fetchurl, pkgconfig, libdrm, libpciaccess, cairo, dri2proto, udev +, libX11, libXext, libXv, libXrandr, glib, bison, libunwind }: stdenv.mkDerivation rec { - name = "intel-gpu-tools-1.10"; + name = "intel-gpu-tools-1.11"; src = fetchurl { url = "http://xorg.freedesktop.org/archive/individual/app/${name}.tar.bz2"; - sha256 = "0x4q7gv14yaniycgdxym9nazlj6wzcvjjhg40bbm5lkw5pqvxwkd"; + sha256 = "1r5dbp2gdxqryv1fhxy83k4d1kfp7rv8q370fhncamrb8m8390j8"; }; - buildInputs = [ pkgconfig libdrm libpciaccess cairo dri2proto udev libX11 libXext libXv libXrandr glib bison ]; - - patches = [ ./compile-fix.patch ]; + buildInputs = [ pkgconfig libdrm libpciaccess cairo dri2proto udev libX11 + libXext libXv libXrandr glib bison libunwind ]; meta = with stdenv.lib; { homepage = https://01.org/linuxgraphics/; diff --git a/pkgs/development/tools/misc/lsof/default.nix b/pkgs/development/tools/misc/lsof/default.nix index 1ef292407a47..af9145bc4096 100644 --- a/pkgs/development/tools/misc/lsof/default.nix +++ b/pkgs/development/tools/misc/lsof/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchurl}: stdenv.mkDerivation { - name = "lsof-4.87"; + name = "lsof-4.88"; src = fetchurl { - url = ftp://lsof.itap.purdue.edu/pub/tools/unix/lsof/lsof_4.87.tar.bz2; - sha256 = "0b6si72sml7gr9784ak491cxxbm9mx5bh174yg6rrirbv04kgpfz"; + url = "ftp://sunsite.ualberta.ca/pub/Mirror/lsof/lsof_4.88.tar.bz2"; + sha256 = "16y9wm26rg81mihnzcbdg8h8vhxmq8kn62ssxb8cqydp4q79nvzy"; }; unpackPhase = "tar xvjf $src; cd lsof_*; tar xvf lsof_*.tar; sourceRoot=$( echo lsof_*/); "; diff --git a/pkgs/development/tools/misc/swig/default.nix b/pkgs/development/tools/misc/swig/default.nix index c4fcd3158457..e10fd25d046f 100644 --- a/pkgs/development/tools/misc/swig/default.nix +++ b/pkgs/development/tools/misc/swig/default.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { sha256 = "02dc8g8wy75nd2is1974rl24c6mdl0ai1vszs1xpg9nd7dlv6i8r"; }; - doCheck = true; + doCheck = !stdenv.isCygwin; # 'make check' uses boost and tcl buildInputs = stdenv.lib.optionals doCheck [ boost tcl ]; diff --git a/pkgs/development/tools/ocaml/ocp-build/default.nix b/pkgs/development/tools/ocaml/ocp-build/default.nix index fe174febc9e3..31b99ada2a38 100644 --- a/pkgs/development/tools/ocaml/ocp-build/default.nix +++ b/pkgs/development/tools/ocaml/ocp-build/default.nix @@ -1,17 +1,16 @@ -{ stdenv, fetchurl, ocaml, findlib, ncurses }: +{ stdenv, fetchurl, ocaml, findlib, ncurses, camlp4 }: stdenv.mkDerivation { - name = "ocp-build-1.99.8-beta"; + name = "ocp-build-1.99.9-beta"; src = fetchurl { - url = http://www.typerex.org/pub/ocp-build/ocp-build.1.99.8-beta.tar.gz; - sha256 = "03zqpl73ah0fji5baxmk8w0h7waamlnhhysi128yap4abzsh5w87"; + url = http://www.typerex.org/pub/ocp-build/ocp-build.1.99.9-beta.tar.gz; + sha256 = "0wcb49bp239ns9mz55ky0kfjcz80cp97k0j0rwaw4h5sp3phn4l0"; }; - buildInputs = [ ocaml findlib ncurses ]; - - patches = [ ./fix-for-no-term.patch ]; + buildInputs = [ ocaml findlib ncurses camlp4 ]; + preInstall = "mkdir -p $out/bin"; # In the Nix sandbox, the TERM variable is unset and stty does not # work. In such a case, ocp-build crashes due to a bug. The diff --git a/pkgs/development/tools/parsing/flexc++/default.nix b/pkgs/development/tools/parsing/flexc++/default.nix index 0a7e25305260..515fb9d251f2 100644 --- a/pkgs/development/tools/parsing/flexc++/default.nix +++ b/pkgs/development/tools/parsing/flexc++/default.nix @@ -24,7 +24,8 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ bobcat gcc49 icmake yodl ]; + buildInputs = [ bobcat gcc49 ]; + nativeBuildInputs = [ icmake yodl ]; postPatch = '' substituteInPlace INSTALL.im --replace /usr $out diff --git a/pkgs/development/tools/slimerjs/default.nix b/pkgs/development/tools/slimerjs/default.nix index 7c6cf82d741f..a35816e2511c 100644 --- a/pkgs/development/tools/slimerjs/default.nix +++ b/pkgs/development/tools/slimerjs/default.nix @@ -3,11 +3,11 @@ let s = # Generated upstream information rec { baseName="slimerjs"; - version="0.9.5"; + version="0.9.6"; name="${baseName}-${version}"; - hash="05p7cwbr2jly6sd6h69j577y48yr05zm2nj7wgnxw0rhyrhkl22s"; - url="http://download.slimerjs.org/releases/0.9.5/slimerjs-0.9.5.zip"; - sha256="05p7cwbr2jly6sd6h69j577y48yr05zm2nj7wgnxw0rhyrhkl22s"; + hash="0wry296iv63bmvm3qbkbgk42nbs80cbir0kv27v0ah5f6kvjc9cq"; + url="http://download.slimerjs.org/releases/0.9.6/slimerjs-0.9.6.zip"; + sha256="0wry296iv63bmvm3qbkbgk42nbs80cbir0kv27v0ah5f6kvjc9cq"; }; buildInputs = [ unzip zip diff --git a/pkgs/games/chocolate-doom/default.nix b/pkgs/games/chocolate-doom/default.nix index 75cee19c6805..8bb55702c599 100644 --- a/pkgs/games/chocolate-doom/default.nix +++ b/pkgs/games/chocolate-doom/default.nix @@ -1,15 +1,14 @@ -{ stdenv, autoconf, automake, pkgconfig, SDL, SDL_mixer, SDL_net, fetchurl }: +{ stdenv, autoreconfHook, pkgconfig, SDL, SDL_mixer, SDL_net, fetchurl }: stdenv.mkDerivation rec { - name = "chocolate-doom-2.1.0"; + name = "chocolate-doom-2.2.0"; src = fetchurl { url = "https://github.com/chocolate-doom/chocolate-doom/archive/${name}.tar.gz"; - sha256 = "1qwnc5j3n99jk35c487mxsij04m4kpkqzkbrb8qwqlsnqllyh1s1"; + sha256 = "0har8zcg3j41byxc3dx6a00aly8vpysf1q7h2qbw39nlrcghag7b"; }; - buildInputs = [ autoconf automake pkgconfig SDL SDL_mixer SDL_net ]; + buildInputs = [ autoreconfHook pkgconfig SDL SDL_mixer SDL_net ]; patchPhase = '' sed -e 's#/games#/bin#g' -i src{,/setup}/Makefile.am - ./autogen.sh --prefix=$out ''; enableParallelBuilding = true; diff --git a/pkgs/games/eduke32/default.nix b/pkgs/games/eduke32/default.nix index 46cd66d22af0..e0c5798d48d6 100644 --- a/pkgs/games/eduke32/default.nix +++ b/pkgs/games/eduke32/default.nix @@ -13,8 +13,9 @@ in stdenv.mkDerivation rec { sha256 = "1nlq5jbglg00c1z1vsyl627fh0mqfxvk5qyxav5vzla2b4svik2v"; }; - buildInputs = [ flac gtk libvorbis libvpx mesa pkgconfig SDL2 SDL2_mixer ] + buildInputs = [ flac gtk libvorbis libvpx mesa SDL2 SDL2_mixer ] ++ stdenv.lib.optional (stdenv.system == "i686-linux") nasm; + nativeBuildInputs = [ pkgconfig ]; postPatch = '' substituteInPlace build/src/glbuild.c \ diff --git a/pkgs/games/scrolls/default.nix b/pkgs/games/scrolls/default.nix index da4a34cfec8c..0f252a5043ff 100644 --- a/pkgs/games/scrolls/default.nix +++ b/pkgs/games/scrolls/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation { src = fetchurl { url = "http://download.scrolls.com/client/linux.tar.gz"; - sha256 = "0gpwb8f1wrj6dfd9ffxga07whnxdgk66bj7j9gkbxlvrx3sj8zbp"; + sha256 = "164d13ce5b81b215a58bae5a0d024b4cf6e32c986ca57a2c9d4e80326edb5004"; }; libPath = stdenv.lib.makeLibraryPath [ diff --git a/pkgs/games/steam/chrootenv.nix b/pkgs/games/steam/chrootenv.nix index 1876e81dc315..96f409faef87 100644 --- a/pkgs/games/steam/chrootenv.nix +++ b/pkgs/games/steam/chrootenv.nix @@ -13,6 +13,7 @@ buildFHSUserEnv { pkgs.python pkgs.gnome2.zenity pkgs.xdg_utils + pkgs.xlibs.xrandr ] ++ lib.optional (config.steam.java or false) pkgs.jdk ++ lib.optional (config.steam.primus or false) pkgs.primus diff --git a/pkgs/games/tibia/default.nix b/pkgs/games/tibia/default.nix index 1e4d1ad7f3fa..4d759c5f8898 100644 --- a/pkgs/games/tibia/default.nix +++ b/pkgs/games/tibia/default.nix @@ -3,11 +3,11 @@ with stdenv.lib; assert stdenv.isi686; stdenv.mkDerivation { - name = "tibia-10.78"; + name = "tibia-10.79"; src = fetchurl { - url = http://static.tibia.com/download/tibia1078.tgz; - sha256 = "087yi8jzi8bn1fp3b8lpp913bzdwf5nszv5p5gr6hx9xyhjj97ax"; + url = http://static.tibia.com/download/tibia1079.tgz; + sha256 = "04wpg5hdfhcp12kk2va3jdijr2p9jfmfivgqrn3cnbblxi83k2sn"; }; shell = stdenv.shell; diff --git a/pkgs/games/tome4/default.nix b/pkgs/games/tome4/default.nix new file mode 100644 index 000000000000..8ff82767cb7a --- /dev/null +++ b/pkgs/games/tome4/default.nix @@ -0,0 +1,29 @@ +{stdenv, fetchurl, openal, libvorbis, mesa_glu, premake4, SDL2, SDL2_image, SDL2_ttf}: + +stdenv.mkDerivation rec { + version = "1.3.1"; + name = "tome4-${version}"; + src = fetchurl { + url = "http://te4.org/dl/t-engine/t-engine4-src-1.3.1.tar.bz2"; + sha256 = "9b6658e29ad3be9f8469a61e724350f4dfec676777e471f633d616443dfbc7e7"; + }; + buildInputs = [ mesa_glu openal libvorbis SDL2 SDL2_ttf SDL2_image premake4 ]; + preConfigure = '' + sed -e "s@/opt/SDL-2.0/include/SDL2@${SDL2}/include/SDL2@g" -e "s@/usr/include/GL@/run/opengl-driver/include@g" -i premake4.lua + premake4 gmake + ''; + makeFlags = [ "config=release" ]; + installPhase = '' + install -Dm755 t-engine $out/opt/tome4/t-engine + echo "cd $out/opt/tome4" >> tome4 + echo "./t-engine &" >> tome4 + install -Dm755 tome4 $out/bin/tome4 + cp -r bootstrap $out/opt/tome4 + cp -r game $out/opt/tome4 + ''; + meta = { + homepage = "http://te4.org/"; + description = "Tales of Maj'eyal (rogue-like game)"; + license = stdenv.lib.licenses.gpl3; + }; +} diff --git a/pkgs/games/zandronum/bin.nix b/pkgs/games/zandronum/bin.nix new file mode 100644 index 000000000000..5d20686c2ae3 --- /dev/null +++ b/pkgs/games/zandronum/bin.nix @@ -0,0 +1,82 @@ +{ stdenv +, atk +, bzip2 +, cairo +, fetchurl +, fontconfig +, freetype +, gdk_pixbuf +, glib +, gtk +, libjpeg_turbo +, mesa_glu +, mesa_noglu +, openssl +, pango +, SDL +, zlib +}: + +stdenv.mkDerivation rec { + name = "zandronum-2.0"; + src = fetchurl { + url = "http://zandronum.com/downloads/zandronum2.0-linux-x86_64.tar.bz2"; + sha256 = "1k49az7x0ig40r2xisscpyhfcx9zzivx8w1l1ispj58g6qivicgc"; + }; + + libPath = stdenv.lib.makeLibraryPath [ + atk + bzip2 + cairo + fontconfig + freetype + gdk_pixbuf + glib + gtk + libjpeg_turbo + mesa_glu + mesa_noglu + openssl + pango + SDL + stdenv.cc.cc + zlib + ]; + + phases = [ "unpackPhase" "installPhase" ]; + + unpackPhase = '' + tar xf $src + ''; + + installPhase = '' + mkdir -p $out/bin + mkdir -p $out/share + cp * $out/share + + patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux-x86-64.so.2 $out/share/zandronum + patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux-x86-64.so.2 $out/share/zandronum-server + + cat > $out/bin/zandronum << EOF + #!/bin/sh + + LD_LIBRARY_PATH=$libPath:$out/share $out/share/zandronum "\$@" + EOF + + cat > $out/bin/zandronum-server << EOF + #!/bin/sh + + LD_LIBRARY_PATH=$libPath:$out/share $out/share/zandronum-server "\$@" + EOF + + chmod +x "$out/bin/zandronum" + chmod +x "$out/bin/zandronum-server" + ''; + + meta = { + homepage = http://zandronum.com/; + description = "multiplayer oriented port, based off Skulltag, for Doom and Doom II by id Software. Binary version for online play."; + maintainer = [ stdenv.lib.maintainers.lassulus ]; + }; +} + diff --git a/pkgs/games/zandronum/default.nix b/pkgs/games/zandronum/default.nix new file mode 100644 index 000000000000..ca60c364f0f3 --- /dev/null +++ b/pkgs/games/zandronum/default.nix @@ -0,0 +1,43 @@ +{ stdenv, fetchhg, cmake, SDL, mesa, fmod42416, openssl, sqlite, sqlite-amalgamation }: + +stdenv.mkDerivation { + name = "zandronum-2.0"; + src = fetchhg { + url = "https://bitbucket.org/Torr_Samaho/zandronum"; + rev = "2fc02c0"; + sha256 = "1syzy0iphm6jj5wag3xyr2fx7vyg2cjcmijhvgw2rc67rww85pv2"; + }; + + phases = [ "unpackPhase" "configurePhase" "buildPhase" "installPhase" ]; + + buildInputs = [ cmake SDL mesa fmod42416 openssl sqlite sqlite-amalgamation ]; + + preConfigure = '' + cp ${sqlite-amalgamation}/* sqlite/ + ''; + + cmakeFlags = [ + "-DFMOD_LIBRARY=${fmod42416}/lib/libfmodex.so" + ]; + + installPhase = '' + mkdir -p $out/bin + mkdir -p $out/share + cp zandronum zandronum.pk3 skulltag_actors.pk3 liboutput_sdl.so $out/share + + cat > $out/bin/zandronum << EOF + #!/bin/sh + + LD_LIBRARY_PATH=$out/share $out/share/zandronum "\$@" + EOF + + chmod +x "$out/bin/zandronum" + ''; + + meta = { + homepage = http://zandronum.com/; + description = "Multiplayer oriented port, based off Skulltag, for Doom and Doom II by id Software."; + maintainer = [ stdenv.lib.maintainers.lassulus ]; + }; +} + diff --git a/pkgs/games/zandronum/server.nix b/pkgs/games/zandronum/server.nix new file mode 100644 index 000000000000..506eee0e54f9 --- /dev/null +++ b/pkgs/games/zandronum/server.nix @@ -0,0 +1,44 @@ +{ stdenv, fetchhg, cmake, openssl, sqlite, sqlite-amalgamation, SDL }: + +stdenv.mkDerivation { + name = "zandronum-server-2.0"; + src = fetchhg { + url = "https://bitbucket.org/Torr_Samaho/zandronum"; + rev = "2fc02c0"; + sha256 = "1syzy0iphm6jj5wag3xyr2fx7vyg2cjcmijhvgw2rc67rww85pv2"; + }; + + phases = [ "unpackPhase" "configurePhase" "buildPhase" "installPhase" ]; + + buildInputs = [ cmake openssl sqlite sqlite-amalgamation SDL ]; + + preConfigure = '' + cp ${sqlite-amalgamation}/* sqlite/ + ''; + + cmakeFlags = [ + "-DSERVERONLY=ON" + ]; + + installPhase = '' + find + mkdir -p $out/bin + mkdir -p $out/share + cp zandronum-server zandronum.pk3 skulltag_actors.pk3 $out/share + + cat > $out/bin/zandronum-server << EOF + #!/bin/sh + + LD_LIBRARY_PATH=$out/share $out/share/zandronum-server "\$@" + EOF + + chmod +x "$out/bin/zandronum-server" + ''; + + meta = { + homepage = http://zandronum.com/; + description = "Server of the multiplayer oriented port, based off Skulltag, for Doom and Doom II by id Software"; + maintainer = [ stdenv.lib.maintainers.lassulus ]; + }; +} + diff --git a/pkgs/misc/drivers/hplip/default.nix b/pkgs/misc/drivers/hplip/default.nix index 8558d1f7deee..ba64b729393f 100644 --- a/pkgs/misc/drivers/hplip/default.nix +++ b/pkgs/misc/drivers/hplip/default.nix @@ -6,11 +6,11 @@ let - name = "hplip-3.15.4"; + name = "hplip-3.15.6"; src = fetchurl { url = "mirror://sourceforge/hplip/${name}.tar.gz"; - sha256 = "0s1yiifp002n8qy0i4cv6j0hq9ikp4jabki5w3xzlaqgd4bjz1x3"; + sha256 = "1jbnjw7vrn1qawrjfdv8j58w69q8ki1qkzvlh0nk8nxacpp17i9h"; }; hplip_state = @@ -31,7 +31,7 @@ let plugin = fetchurl { url = "http://www.openprinting.org/download/printdriver/auxfiles/HP/plugins/${name}-plugin.run"; - sha256 = "00zhaq48m7p6nrxfy16086hzghf2pfr32s53sndbpp2514v2j392"; + sha256 = "1rymxahz12s1s37rri5qyvka6q0yi0yai08kgspg24176ry3a3fx"; }; in @@ -139,9 +139,11 @@ stdenv.mkDerivation { pythonPackages.wrapPython saneBackends dbus - pkgconfig net_snmp ] ++ stdenv.lib.optional qtSupport qt4; + nativeBuildInputs = [ + pkgconfig + ]; pythonPath = with pythonPackages; [ dbus diff --git a/pkgs/misc/emulators/vbam/default.nix b/pkgs/misc/emulators/vbam/default.nix new file mode 100644 index 000000000000..9c79852a4aa6 --- /dev/null +++ b/pkgs/misc/emulators/vbam/default.nix @@ -0,0 +1,59 @@ +{ stdenv +, cairo +, cmake +, fetchsvn +, ffmpeg +, gettext +, libpng +, libpthreadstubs +, libXdmcp +, libxshmfence +, mesa +, openal +, pkgconfig +, SDL +, wxGTK +, zip +, zlib +}: + +stdenv.mkDerivation { + name = "VBAM-1507"; + src = fetchsvn { + url = "svn://svn.code.sf.net/p/vbam/code/trunk"; + rev = 1507; + sha256 = "0fqvgi5s0sacqr9yi7kv1klqlvfzr13sjq5ikipirz0jv50kjxa7"; + }; + + buildInputs = [ + cairo + cmake + ffmpeg + gettext + libpng + libpthreadstubs + libXdmcp + libxshmfence + mesa + openal + pkgconfig + SDL + wxGTK + zip + zlib + ]; + + cmakeFlags = [ + "-DCMAKE_BUILD_TYPE='Release'" + "-DENABLE_FFMPEG='true'" + #"-DENABLE_LINK='true'" currently broken :/ + "-DSYSCONFDIR='$out/etc'" + ]; + + meta = { + description = "A merge of the original Visual Boy Advance forks"; + license = stdenv.lib.licenses.gpl2; + maintainers = [ stdenv.lib.maintainers.lassulus ]; + homepage = http://vba-m.com/; + }; +} diff --git a/pkgs/misc/vim-plugins/default.nix b/pkgs/misc/vim-plugins/default.nix index d693d9df8576..28db4c343c12 100644 --- a/pkgs/misc/vim-plugins/default.nix +++ b/pkgs/misc/vim-plugins/default.nix @@ -35,13 +35,16 @@ rec { # Update with vimUtils.vimPlugins.pluginnames2Nix command # aliasess + "sourcemap.vim" = sourcemap; + Colour_Sampler_Pack = Colour-Sampler-Pack; + YouCompleteMe = youcompleteme; airline = vim-airline; alternative = a-vim; # backwards compat, added 2014-10-21 + calendar = calendar-vim; coffee-script = vim-coffee-script; coffeeScript = coffee-script; # backwards compat, added 2014-10-18 colors-solarized = Solarized; colorsamplerpack = Colour_Sampler_Pack; - Colour_Sampler_Pack = Colour-Sampler-Pack; command_T = command-t; # backwards compat, added 2014-10-18 easy-align = vim-easy-align; easymotion = vim-easymotion; @@ -52,36 +55,40 @@ rec { gundo = Gundo; haskellConceal = haskellconceal; # backwards compat, added 2014-10-18 haskellconceal = vim-haskellconceal; - hoogle = Hoogle; hier = vim-hier; + hoogle = Hoogle; ipython = vim-ipython; latex-live-preview = vim-latex-live-preview; necoGhc = neco-ghc; # backwards compat, added 2014-10-18 + neocomplete = neocomplete-vim; + neosnippet = neosnippet-vim; nerdcommenter = The_NERD_Commenter; nerdtree = The_NERD_tree; quickrun = vim-quickrun; signature = vim-signature; - "sourcemap.vim" = sourcemap; stylish-haskell = vim-stylish-haskell; stylishHaskell = stylish-haskell; # backwards compat, added 2014-10-18 supertab = Supertab; syntastic = Syntastic; tabular = Tabular; tagbar = Tagbar; + thumbnail = thumbnail-vim; tmux-navigator = vim-tmux-navigator; tmuxNavigator = tmux-navigator; # backwards compat, added 2014-10-18 + tslime = tslime-vim; + vimproc = vimproc-vim; + vimshell = vimshell-vim; watchdogs = vim-watchdogs; webapi-vim = WebAPI; yankring = YankRing; - YouCompleteMe = youcompleteme; Gist = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "Gist-2015-05-29"; + name = "Gist-2015-06-09"; src = fetchgit { url = "git://github.com/mattn/gist-vim"; - rev = "235955468c2d85e5d0ece46d84948acf2bedeb20"; - sha256 = "50ac95e145d00631acb3ae53261c880920b40b208fed1aaae71ed31d070e381e"; + rev = "c39e5e317d88da71da338c07af492c7a27efcf0a"; + sha256 = "97fa171cf239b54ee4ab102dd9f87810744bfa3edd34fe04d4dd8a879b22d5b4"; }; dependencies = []; @@ -132,11 +139,11 @@ rec { }; Syntastic = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "Syntastic-2015-05-29"; + name = "Syntastic-2015-06-12"; src = fetchgit { url = "git://github.com/scrooloose/syntastic"; - rev = "5c6e78a2711aa5d04d116123d78684b620033c3d"; - sha256 = "fa8781df0c37b5d120ab4b287a911a1545cd4342edf08f85d644097c50ff59b0"; + rev = "b8682c3029de5913e0a63a45e5f4d6f3b5e4920e"; + sha256 = "6ec2a6a3b4b3998612d21fcdccdb82799f8cf4022d6bc38e16f85ece8692d3a3"; }; dependencies = []; @@ -187,11 +194,11 @@ rec { }; UltiSnips = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "UltiSnips-2015-05-11"; + name = "UltiSnips-2015-06-11"; src = fetchgit { url = "git://github.com/sirver/ultisnips"; - rev = "188e00f7b87297ea7737f9494d531c7073637332"; - sha256 = "9fb127b32bd0e2ae139b3b6008849f4566cfb1c29087e787570428c770a3430c"; + rev = "c3a0924b777dbba2f8612950bd8f8a00df18d1bf"; + sha256 = "7ad0e5dc8e8713db38ef2875e5d512e6cf8ef3dd7885ce12aff22052da780593"; }; dependencies = []; @@ -269,11 +276,11 @@ rec { }; fugitive = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "fugitive-2015-05-31"; + name = "fugitive-2015-06-14"; src = fetchgit { url = "git://github.com/tpope/vim-fugitive"; - rev = "e065e4f841f4a033ac9a6156573a446007617b1d"; - sha256 = "339e2418da5f7e04490e6732010abd2f287c935e7a20df5832611f94ed42013f"; + rev = "1c844375fa2762e3b7c16294fa36afee6fef28b1"; + sha256 = "fa02d055243a386fe3fdb5069f36d3f035ace3594c1b1dd4a4bbc61df232fb97"; }; dependencies = []; @@ -291,11 +298,11 @@ rec { }; vim-addon-vim2nix = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-addon-vim2nix-2015-06-01"; + name = "vim-addon-vim2nix-2015-06-16"; src = fetchgit { url = "git://github.com/JagaJaga/vim-addon-vim2nix"; - rev = "cfa1f191b9e427dee77f8054a911a327c3cf4f79"; - sha256 = "9960dd3248ffc8d2d3b9bf322df2369feb7a6bf54d47253bd65de1988d2e5ec3"; + rev = "046702653f7af5829a3f3fda3b7cf89c2a8d03b5"; + sha256 = "b92068c32ce14e75159070acbd86c52e09aaa65a523fd566e44762ed33403161"; }; dependencies = ["vim-addon-manager"]; @@ -467,22 +474,22 @@ rec { }; vim-eighties = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-eighties-2015-04-16"; + name = "vim-eighties-2015-06-15"; src = fetchgit { url = "git://github.com/justincampbell/vim-eighties"; - rev = "d202e6015163bbb4f7c9973f2eac66c2351e8c24"; - sha256 = "ad7341c8d7ab659b062a67f893962b08596466a6a3a3395f28a4f4031a36eb9c"; + rev = "68dc644664bf569e96ac91f79fdf828e89d70e02"; + sha256 = "d6600665179395141d660c65dad3e03c13aeba164a6c1e6fabfc9e2499588132"; }; dependencies = []; }; latex-box = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "latex-box-2015-05-16"; + name = "latex-box-2015-06-01"; src = fetchgit { url = "git://github.com/latex-box-team/latex-box"; - rev = "55a88ed55a7631b91321916cf80c47077d478c9c"; - sha256 = "96203a95d919db65574e187b793a7d846463d91fe641349732cc5d9aeb8242ac"; + rev = "3c2901e12cb78bfb2be58ba4c62a488612550fe1"; + sha256 = "8af2c45209c39438da8481183a1f14885891db73454bb4b16d24799453184e81"; }; dependencies = []; @@ -517,11 +524,11 @@ rec { rev = "0854ac6a810daae4a5c99bcae61613266ce75c26"; sha256 = "886a173d48340ad0ddeb3c852e4f2bdfc7b513a9d5a954115d081a3e276fa655"; }; + dependencies = []; patchPhase = '' substituteInPlace plugin/xkbswitch.vim \ --replace /usr/local/lib/libxkbswitch.so ${xkb_switch}/lib/libxkbswitch.so ''; - dependencies = []; buildInputs = [ xkb_switch ]; }; @@ -548,22 +555,22 @@ rec { }; vim-watchdogs = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-watchdogs-2015-04-16"; + name = "vim-watchdogs-2015-06-15"; src = fetchgit { url = "git://github.com/osyo-manga/vim-watchdogs"; - rev = "5e3d1db592297f7d4c563900a6d224ff559f533e"; - sha256 = "3d4c9624d86815dd47d7655eb58a703574f2ecb92238ae4e65dc67fc9960820a"; + rev = "7dd19b1344e6bb89ecd469b085ad945435905eb9"; + sha256 = "8481b5e0efffec520f66920aaf3f2da843c01c70688a4c71f7b31ead8d4049d1"; }; dependencies = []; }; racer = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "racer-2015-06-01"; + name = "racer-2015-06-15"; src = fetchgit { url = "git://github.com/phildawes/racer"; - rev = "7425ae5299ed3f89817945fd867403e825070df6"; - sha256 = "0721528de38e179ab887ccb06339dabcc5aa43c564f47fa06a372ace6e9ba457"; + rev = "dd0671b8d6e66e3e503bd7049561fb08e7815ed3"; + sha256 = "ec996e7cbf46aec545b70781108f4290dacecd02b599a0d13b8b0cf431205403"; }; dependencies = []; buildPhase = '' @@ -573,33 +580,33 @@ rec { }; neocomplete-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "neocomplete-vim-2015-05-26"; + name = "neocomplete-vim-2015-06-15"; src = fetchgit { url = "git://github.com/shougo/neocomplete.vim"; - rev = "0a8a7e8a72a23459c2eda5116fe9b22b0dad7a3e"; - sha256 = "fe75653939e1299b71708a26a9af2ca1e4ac0f1daed8aa98ce46b8bb26c9bd71"; + rev = "15c6a63ca8807493df273c77be0754f44d68d30b"; + sha256 = "1a2a30da610e5f252bbe43717cf2cad76b8b09916c2082541fc3bb456b9b97a9"; }; dependencies = []; }; neosnippet-snippets = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "neosnippet-snippets-2015-05-28"; + name = "neosnippet-snippets-2015-06-11"; src = fetchgit { url = "git://github.com/shougo/neosnippet-snippets"; - rev = "842622af4ce0e559ba64f4b991d0de8b9cade6af"; - sha256 = "5d9a3c2d06edb3146e0dbdbba7d8c411197914bea8192844a3c849987e23a72a"; + rev = "522c38e28949ae53af8c96d7bcbda192b92e3656"; + sha256 = "ff0c09fb5a70e011cb7570951a67ef0253f544b3f61c8e7741d65d27b4d418c1"; }; dependencies = []; }; neosnippet-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "neosnippet-vim-2015-05-12"; + name = "neosnippet-vim-2015-06-13"; src = fetchgit { url = "git://github.com/shougo/neosnippet.vim"; - rev = "e2c830db87e50e8cdb1128f3096664f68cb05cad"; - sha256 = "bc950c1756d3c276dc231563749a9fbe7de0d5595e30428e1408bb530bc61e6f"; + rev = "3cfe8368cfccffdeab660ca1019696e0fd1aa944"; + sha256 = "049555be6a2aedee7fffc583d43c0cbe3aecc2f0efcf6cfab826e30b2e83f2fd"; }; dependencies = []; @@ -676,16 +683,17 @@ rec { }; youcompleteme = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "youcompleteme-2015-05-29"; + name = "youcompleteme-2015-06-12"; src = fetchgit { url = "git://github.com/valloric/youcompleteme"; - rev = "c2d962dddb4cc86f771722e9775d2345d31fe8bb"; - sha256 = "2543d42662e99401ac8b4ff938fe5452b6d0215befc155e9b24590533a4bfe06"; + rev = "d77ef96ebcca90381f38604d7fb2e90da91bd503"; + sha256 = "7a794986eebd8fa952be3dc903588d124dd14377a07bff1b877279c3b7d498f9"; }; dependencies = []; buildInputs = [ python cmake - llvmPackages.clang-unwrapped llvmPackages.llvm + (if stdenv.isDarwin then llvmPackages.clang else llvmPackages.clang-unwrapped) + llvmPackages.llvm ]; configurePhase = ":"; @@ -732,7 +740,7 @@ rec { }; a-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "a-vim-git-2010-11-06"; + name = "a-vim-2010-11-06"; src = fetchgit { url = "git://github.com/vim-scripts/a.vim"; rev = "2cbe946206ec622d9d8cf2c99317f204c4d41885"; @@ -743,7 +751,7 @@ rec { }; align = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "align-git-2012-08-07"; + name = "align-2012-08-07"; src = fetchgit { url = "git://github.com/vim-scripts/align"; rev = "787662fe90cd057942bc5b682fd70c87e1a9dd77"; @@ -765,11 +773,11 @@ rec { }; vim-wakatime = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-wakatime-2015-05-31"; + name = "vim-wakatime-2015-06-11"; src = fetchgit { url = "git://github.com/wakatime/vim-wakatime"; - rev = "1e2ba90f708965719ed52c4ea2728bc3cfa32f6d"; - sha256 = "ebd5a651554742727944f4a705ccbe990875d4ed656fc535183474091bcf1f1c"; + rev = "b2dcc7ccc2247274fe63168952de5db595a01e1c"; + sha256 = "883f92fcd45a824009e613d8a527effd1eac8bef0fe4299c0df366376afb6273"; }; dependencies = []; buildInputs = [ python ]; @@ -903,11 +911,11 @@ rec { }; table-mode = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "table-mode-2015-04-21"; + name = "table-mode-2015-06-05"; src = fetchgit { url = "git://github.com/dhruvasagar/vim-table-mode"; - rev = "cc723fe8cdab054f325292c288103229b0193147"; - sha256 = "4daee279dc4e9c48af41a70bc45385136fa02546bdc8525f68ce44404db7a84a"; + rev = "5395c9f52b91ae6083fd7b26577b8f926da6871e"; + sha256 = "784e51f7144790fcfad83c2dc5c7f250608826ce48706b80c41f88fa04914ae2"; }; dependencies = []; @@ -1166,11 +1174,11 @@ rec { }; vim-airline = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-airline-2015-05-25"; + name = "vim-airline-2015-06-09"; src = fetchgit { url = "git://github.com/bling/vim-airline"; - rev = "67de5f2257f8d5def7a31e3009d4298ce977cb80"; - sha256 = "0ca13f68b22ce3112117d7194f3d6b4e1280f032bc7bbca6fba4df185ff1da2a"; + rev = "b29e01fa22ee8b8eb02cf505382a90b045b4bc64"; + sha256 = "e943dd5900d4d49a6f7dd02434b394167a3802d68d17072fc767552a9fd16001"; }; dependencies = []; @@ -1199,11 +1207,11 @@ rec { }; vim-gista = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-gista-2015-01-29"; + name = "vim-gista-2015-06-04"; src = fetchgit { url = "git://github.com/lambdalisue/vim-gista"; - rev = "e450417a6eaeb99d3982b880507697dce85b7217"; - sha256 = "a7665dbc63a35d1fe9b7679a498deafb80c8dfb05fced37ac4722212c673f2ec"; + rev = "ffe85c0438cf5ad76b07ddb6524de3803c2bfdba"; + sha256 = "9f44d07a4f36fb4559c99a655501b3752e180458de9d76d1cb293abd0f990fb4"; }; dependencies = []; @@ -1254,11 +1262,11 @@ rec { }; vim-snippets = buildVimPluginFrom2Nix { # created by nix#NixDerivation - name = "vim-snippets-2015-05-31"; + name = "vim-snippets-2015-06-08"; src = fetchgit { url = "git://github.com/honza/vim-snippets"; - rev = "0e9eff1bf36728b6423171f962a8d6e5de7a4621"; - sha256 = "0d2342a184806ba9357871ef77229a29854a665fd4e75674638136d2054c0551"; + rev = "69c918175c77c0a0516c3ab587509a3eca38b3ae"; + sha256 = "1fe9c6d5f80513bc35c309723b57d73d42296fbe73d44c0df1de4244b2596bf0"; }; dependencies = []; @@ -1301,4 +1309,5 @@ rec { }; + } diff --git a/pkgs/os-specific/darwin/derez/default.nix b/pkgs/os-specific/darwin/derez/default.nix new file mode 100644 index 000000000000..f64f05aadf09 --- /dev/null +++ b/pkgs/os-specific/darwin/derez/default.nix @@ -0,0 +1,34 @@ +{ stdenv }: + +# this tool only exists on darwin +assert stdenv.isDarwin; + +stdenv.mkDerivation { + name = "derez"; + + src = "/usr/bin/DeRez"; + + unpackPhase = "true"; + configurePhase = "true"; + buildPhase = "true"; + + installPhase = '' + mkdir -p "$out/bin" + ln -s $src "$out/bin" + ''; + + meta = with stdenv.lib; { + description = "Decompiles resources"; + homepage = "https://developer.apple.com/library/mac/documentation/Darwin/Reference/ManPages/man1/DeRez.1.html"; + maintainers = [ maintainers.lnl7 ]; + platforms = platforms.darwin; + + longDescription = '' + The DeRez tool decompiles the resource fork of resourceFile according to the type declarations + supplied by the type declaration files. The resource description produced by this decompilation + contains the resource definitions (resource and data statements) associated with these type + declarations. If for some reason it cannot reproduce the appropriate resource statements, DeRez + generates hexadecimal data statements instead. + ''; + }; +} diff --git a/pkgs/os-specific/darwin/rez/default.nix b/pkgs/os-specific/darwin/rez/default.nix new file mode 100644 index 000000000000..847dfc6e6f34 --- /dev/null +++ b/pkgs/os-specific/darwin/rez/default.nix @@ -0,0 +1,33 @@ +{ stdenv }: + +# this tool only exists on darwin +assert stdenv.isDarwin; + +stdenv.mkDerivation { + name = "rez"; + + src = "/usr/bin/Rez"; + + unpackPhase = "true"; + configurePhase = "true"; + buildPhase = "true"; + + installPhase = '' + mkdir -p "$out/bin" + ln -s $src "$out/bin" + ''; + + meta = with stdenv.lib; { + description = "Compiles resources"; + homepage = "https://developer.apple.com/library/mac/documentation/Darwin/Reference/ManPages/man1/Rez.1.html"; + maintainers = [ maintainers.lnl7 ]; + platforms = platforms.darwin; + + longDescription = '' + The Rez tool compiles the resource fork of a file according to the textual description contained in + the resource description files. These resource description files must contain both the type + declarations and the resource definitions needed to compile the resources. This data can come + directly from the resource description files. + ''; + }; +} diff --git a/pkgs/os-specific/linux/bluez/bluez5.nix b/pkgs/os-specific/linux/bluez/bluez5.nix index 6e8fbdacf845..03c3d5943fe5 100644 --- a/pkgs/os-specific/linux/bluez/bluez5.nix +++ b/pkgs/os-specific/linux/bluez/bluez5.nix @@ -5,11 +5,11 @@ assert stdenv.isLinux; stdenv.mkDerivation rec { - name = "bluez-5.30"; + name = "bluez-5.31"; src = fetchurl { url = "mirror://kernel/linux/bluetooth/${name}.tar.xz"; - sha256 = "0b1qbnq1xzcdw5rajg9yyg31bf21jnff0n6gnf1snz89bbdllfhy"; + sha256 = "13w1cdybwyb9pww64hp8dwxqq9zs58wh1mq8sslsknb6b3663dn4"; }; pythonPath = with pythonPackages; diff --git a/pkgs/os-specific/linux/eudev/default.nix b/pkgs/os-specific/linux/eudev/default.nix index e2bcf9837e7a..de8ad00acc81 100644 --- a/pkgs/os-specific/linux/eudev/default.nix +++ b/pkgs/os-specific/linux/eudev/default.nix @@ -3,10 +3,10 @@ let s = # Generated upstream information rec { baseName="eudev"; - version = "3.0"; + version = "3.1.1"; name="${baseName}-${version}"; url="http://dev.gentoo.org/~blueness/eudev/eudev-${version}.tar.gz"; - sha256 = "0afva1vh3lwhw9bryh41dxg82kfnxj1ifa91p3gjwffc2fpqmnvl"; + sha256 = "1r1jbk1fwc4wl0ifm7xzkb2vjd8w1a39hx6mmy4pp4fl2gvcg86k"; }; buildInputs = [ glib pkgconfig gperf utillinux diff --git a/pkgs/os-specific/linux/i2c-tools/default.nix b/pkgs/os-specific/linux/i2c-tools/default.nix new file mode 100644 index 000000000000..5cac6069e727 --- /dev/null +++ b/pkgs/os-specific/linux/i2c-tools/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchurl, perl, read-edid }: + +stdenv.mkDerivation rec { + name = "i2c-tools-${version}"; + version = "3.1.1"; + + src = fetchurl { + url = "http://dl.lm-sensors.org/i2c-tools/releases/${name}.tar.bz2"; + sha256 = "000pvg995qy1b15ks59gd0klri55hb33kqpg5czy84hw1pbdgm0l"; + }; + + buildInputs = [ perl ]; + + patchPhase = '' + substituteInPlace eeprom/decode-edid --replace "/usr/sbin/parse-edid" "${read-edid}/bin/parse-edid" + substituteInPlace stub/i2c-stub-from-dump --replace "/sbin/" "" + ''; + + installPhase = '' + make install prefix=$out + rm -rf $out/include # Installs include/linux/i2c-dev.h that conflics with kernel headers + ''; + + meta = with stdenv.lib; { + description = "Set of I2C tools for Linux"; + homepage = http://www.lm-sensors.org/wiki/I2CTools; + license = licenses.gpl2; + maintainers = [ maintainers.dezgeg ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/os-specific/linux/kernel/linux-3.12.nix b/pkgs/os-specific/linux/kernel/linux-3.12.nix index 2646bf93b0ac..e34eccadda6b 100644 --- a/pkgs/os-specific/linux/kernel/linux-3.12.nix +++ b/pkgs/os-specific/linux/kernel/linux-3.12.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, ... } @ args: import ./generic.nix (args // rec { - version = "3.12.43"; + version = "3.12.44"; extraMeta.branch = "3.12"; src = fetchurl { url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz"; - sha256 = "08nsppn3rpwydkq0pd8k8fgjfm67y2nbbrcz1hri227crxxx13dm"; + sha256 = "05fyb49ibijq2iv4x25m5a77n8609b4lz8x8n8wfkdywm13479h8"; }; features.iwlwifi = true; diff --git a/pkgs/os-specific/linux/kernel/linux-3.18.nix b/pkgs/os-specific/linux/kernel/linux-3.18.nix index 592086b65474..168bfe5e94cd 100644 --- a/pkgs/os-specific/linux/kernel/linux-3.18.nix +++ b/pkgs/os-specific/linux/kernel/linux-3.18.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, ... } @ args: import ./generic.nix (args // rec { - version = "3.18.14"; + version = "3.18.16"; extraMeta.branch = "3.18"; src = fetchurl { url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz"; - sha256 = "1xh0vvn1l2g1kkg54f0mg0inbpsiqs24ybgsakksmcpcadjgqk1i"; + sha256 = "0c2530amgsk29ina9mfvlncki64w0zs16d2k8bghq3fv9k2qv3nr"; }; features.iwlwifi = true; diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index 60bc4e51209b..ec7e597e8713 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, ... } @ args: import ./generic.nix (args // rec { - version = "4.1-rc7"; - modDirVersion = "4.1.0-rc7"; + version = "4.1-rc8"; + modDirVersion = "4.1.0-rc8"; extraMeta.branch = "4.1"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/testing/linux-${version}.tar.xz"; - sha256 = "09bxkm0nl9vzlfb14500bl6zjzhgacy7y32b3mw1d9hx62yknk2f"; + sha256 = "0ia4lajpr3w9iivmwm2d7gqrpv97da5g4j8pkqa7q4mlr86jki2w"; }; features.iwlwifi = true; diff --git a/pkgs/os-specific/linux/kernel/patches.nix b/pkgs/os-specific/linux/kernel/patches.nix index f622bf9c7829..4815cae259be 100644 --- a/pkgs/os-specific/linux/kernel/patches.nix +++ b/pkgs/os-specific/linux/kernel/patches.nix @@ -65,17 +65,17 @@ rec { }; grsecurity_stable = grsecPatch - { kversion = "3.14.43"; - revision = "201506021902"; + { kversion = "3.14.44"; + revision = "201506082249"; branch = "stable"; - sha256 = "1b8kp9q9kslxz4adv1h0qahd96wnidpaa3k1mqmcaf8ia1b63dsk"; + sha256 = "11lclmiyg37bq3sgf6d6lky5yngr15hgmgkilrhy3081ifnsf7ax"; }; grsecurity_unstable = grsecPatch - { kversion = "4.0.4"; - revision = "201506021902"; + { kversion = "4.0.5"; + revision = "201506082251"; branch = "test"; - sha256 = "03fbx2vmlvh0bng3l4nxkfdxkgl9sgjkmwd0irq2bvb3gwk2bp03"; + sha256 = "03im0gq8b2n6fdxvrdd5iyi1viwl83zfjwqbamqyvkhmi2vbvhwk"; }; grsec_fix_path = diff --git a/pkgs/os-specific/linux/kmod/default.nix b/pkgs/os-specific/linux/kmod/default.nix index 1d190be71b8b..b5559e535ec5 100644 --- a/pkgs/os-specific/linux/kmod/default.nix +++ b/pkgs/os-specific/linux/kmod/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, xz, zlib, pkgconfig, libxslt }: stdenv.mkDerivation rec { - name = "kmod-20"; + name = "kmod-21"; src = fetchurl { url = "mirror://kernel/linux/utils/kernel/kmod/${name}.tar.xz"; - sha256 = "186sz8b82n02yykza6a1q8fk80fl5gx0nr42wpmzjc9w36ia3hc9"; + sha256 = "1h4m1mkknxcshsz1qbg9riszmynix2ikg7q8inq7bkvlmx4982hn"; }; # Disable xz/zlib support to prevent needing them in the initrd. diff --git a/pkgs/os-specific/linux/lvm2/default.nix b/pkgs/os-specific/linux/lvm2/default.nix index 228f7b34be01..250baa3fbc21 100644 --- a/pkgs/os-specific/linux/lvm2/default.nix +++ b/pkgs/os-specific/linux/lvm2/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, pkgconfig, udev, utillinux, coreutils, enable_dmeventd ? false }: let - version = "2.02.118"; + version = "2.02.120"; in stdenv.mkDerivation { @@ -9,7 +9,7 @@ stdenv.mkDerivation { src = fetchurl { url = "ftp://sources.redhat.com/pub/lvm2/releases/LVM2.${version}.tgz"; - sha256 = "1ishsibxn1l5fymrrc5fd3z05x1z2zh0y8939wpvwz0qp9rwxazn"; + sha256 = "06h8csqjy6b0khi73kklkp10j5yq3j1kxklfaf158c80glpx0swd"; }; configureFlags = diff --git a/pkgs/os-specific/linux/lxc/default.nix b/pkgs/os-specific/linux/lxc/default.nix index 8115aa1055be..1c6847cce822 100644 --- a/pkgs/os-specific/linux/lxc/default.nix +++ b/pkgs/os-specific/linux/lxc/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, perl, docbook2x -, docbook_xml_dtd_45, systemd +, docbook_xml_dtd_45, systemd, wrapPython , libapparmor ? null, gnutls ? null, libseccomp ? null, cgmanager ? null -, libnih ? null, dbus ? null, libcap ? null +, libnih ? null, dbus ? null, libcap ? null, python3 ? null }: let @@ -20,7 +20,8 @@ stdenv.mkDerivation rec { buildInputs = [ autoreconfHook pkgconfig perl docbook2x systemd - libapparmor gnutls libseccomp cgmanager libnih dbus libcap + libapparmor gnutls libseccomp cgmanager libnih dbus libcap python3 + wrapPython ]; patches = [ ./support-db2x.patch ]; @@ -49,6 +50,8 @@ stdenv.mkDerivation rec { "LXCPATH=\${TMPDIR}/var/lib/lxc" ]; + postInstall = "wrapPythonPrograms"; + meta = { homepage = "http://lxc.sourceforge.net"; description = "userspace tools for Linux Containers, a lightweight virtualization system"; @@ -63,6 +66,6 @@ stdenv.mkDerivation rec { ''; platforms = platforms.linux; - maintainers = with maintainers; [ simons wkennington ]; + maintainers = with maintainers; [ simons wkennington globin ]; }; } diff --git a/pkgs/os-specific/linux/mcelog/default.nix b/pkgs/os-specific/linux/mcelog/default.nix index 1706b8b87faa..63bab2ddd76c 100644 --- a/pkgs/os-specific/linux/mcelog/default.nix +++ b/pkgs/os-specific/linux/mcelog/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchFromGitHub }: -let version = "119"; in +let version = "120"; in stdenv.mkDerivation { name = "mcelog-${version}"; src = fetchFromGitHub { - sha256 = "04zm8pa7r6awjgza8m048srvqcyayzdzw93vl8yrjzhh37p5m4gp"; + sha256 = "1x50g0vrarcv31x4xszcxkpwklkq6mrv2xr1dxbbds26qz8jk11l"; rev = "v${version}"; repo = "mcelog"; owner = "andikleen"; diff --git a/pkgs/os-specific/linux/mdadm/default.nix b/pkgs/os-specific/linux/mdadm/default.nix index a7965a70b1c7..042c2225ff3a 100644 --- a/pkgs/os-specific/linux/mdadm/default.nix +++ b/pkgs/os-specific/linux/mdadm/default.nix @@ -19,6 +19,9 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ groff ]; + # Attempt removing if building with gcc5 when updating + NIX_CFLAGS_COMPILE = "-std=gnu89"; + preConfigure = "sed -e 's@/lib/udev@\${out}/lib/udev@' -e 's@ -Werror @ @' -i Makefile"; # Force mdadm to use /var/run/mdadm.map for its map file (or diff --git a/pkgs/os-specific/linux/nvidia-x11/default.nix b/pkgs/os-specific/linux/nvidia-x11/default.nix index e660004d1729..a1278af80843 100644 --- a/pkgs/os-specific/linux/nvidia-x11/default.nix +++ b/pkgs/os-specific/linux/nvidia-x11/default.nix @@ -12,7 +12,7 @@ assert (!libsOnly) -> kernel != null; let - versionNumber = "346.59"; + versionNumber = "352.21"; # Policy: use the highest stable version as the default (on our master). inherit (stdenv.lib) makeLibraryPath; @@ -28,12 +28,12 @@ stdenv.mkDerivation { if stdenv.system == "i686-linux" then fetchurl { url = "http://us.download.nvidia.com/XFree86/Linux-x86/${versionNumber}/NVIDIA-Linux-x86-${versionNumber}.run"; - sha256 = "0a91mmv9846chyx6rbf3hx39gr344cffmgic45a9sf82rky87kv5"; + sha256 = "1l206091frcpql8ql82i5jkf955wdr56ikh9aprwhqkyyjjq4qv1"; } else if stdenv.system == "x86_64-linux" then fetchurl { url = "http://us.download.nvidia.com/XFree86/Linux-x86_64/${versionNumber}/NVIDIA-Linux-x86_64-${versionNumber}-no-compat32.run"; - sha256 = "0rz7pdzdviz1086w8ks6qiv83ah84y13h3051xr1p4wa4kll2yac"; + sha256 = "1sv495i5s1fd7j4k4yr53xbgc9jind0y74mqivv36p5z6m8z5k6g"; } else throw "nvidia-x11 does not support platform ${stdenv.system}"; diff --git a/pkgs/os-specific/linux/procps-ng/default.nix b/pkgs/os-specific/linux/procps-ng/default.nix index 9ecc0c5bcb57..7a810e9fff97 100644 --- a/pkgs/os-specific/linux/procps-ng/default.nix +++ b/pkgs/os-specific/linux/procps-ng/default.nix @@ -1,14 +1,14 @@ -{ stdenv, fetchurl, pkgconfig, ncurses, systemd }: +{ lib, stdenv, fetchurl, ncurses }: -stdenv.mkDerivation rec { - name = "procps-ng-3.3.10"; +stdenv.mkDerivation { + name = "procps-3.3.10"; src = fetchurl { - url = "mirror://sourceforge/procps-ng/${name}.tar.xz"; + url = mirror://sourceforge/procps-ng/procps-ng-3.3.10.tar.xz; sha256 = "013z4rzy3p5m1zp6mmynpblv0c6zlcn91pw4k2vymz2djyc6ybm0"; }; - buildInputs = [ pkgconfig ncurses systemd ]; + buildInputs = [ ncurses ]; makeFlags = "usrbin_execdir=$(out)/bin"; @@ -19,21 +19,13 @@ stdenv.mkDerivation rec { }; # Too red - configureFlags = [ - "--disable-modern-top" - "--enable-watch8bit" - "--with-systemd" - "--enable-skill" - "--enable-oomem" - "--enable-sigwinch" - ]; - - meta = with stdenv.lib; { + configureFlags = [ "--disable-modern-top" ]; + + meta = { homepage = http://sourceforge.net/projects/procps-ng/; description = "Utilities that give information about processes using the /proc filesystem"; priority = 10; # less than coreutils, which also provides "kill" and "uptime" - maintainers = with maintainers; [ wkennington ]; - license = licenses.gpl2; - platforms = platforms.linux; + license = lib.licenses.gpl2; + platforms = lib.platforms.linux; }; } diff --git a/pkgs/os-specific/linux/radeontop/default.nix b/pkgs/os-specific/linux/radeontop/default.nix index 99100b85cb6e..05442abc5e80 100644 --- a/pkgs/os-specific/linux/radeontop/default.nix +++ b/pkgs/os-specific/linux/radeontop/default.nix @@ -11,7 +11,8 @@ stdenv.mkDerivation { owner = "clbr"; }; - buildInputs = [ pkgconfig gettext ncurses libdrm libpciaccess ]; + buildInputs = [ ncurses libdrm libpciaccess ]; + nativeBuildInputs = [ pkgconfig gettext ]; enableParallelBuilding = true; diff --git a/pkgs/os-specific/linux/read-edid/default.nix b/pkgs/os-specific/linux/read-edid/default.nix new file mode 100644 index 000000000000..fdf2c4c9f12b --- /dev/null +++ b/pkgs/os-specific/linux/read-edid/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchurl, cmake, libx86 }: + +stdenv.mkDerivation rec { + name = "read-edid-${version}"; + version = "3.0.2"; + + src = fetchurl { + url = "http://www.polypux.org/projects/read-edid/${name}.tar.gz"; + sha256 = "0vqqmwsgh2gchw7qmpqk6idgzcm5rqf2fab84y7gk42v1x2diin7"; + }; + + buildInputs = [ cmake libx86 ]; + + patchPhase = '' + substituteInPlace CMakeLists.txt --replace 'COPYING' 'LICENSE' + ''; + + meta = with stdenv.lib; { + description = "Tool for reading and parsing EDID data from monitors"; + homepage = http://www.polypux.org/projects/read-edid/; + license = licenses.bsd2; # Quoted: "This is an unofficial license. Let's call it BSD-like." + maintainers = [ maintainers.dezgeg ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/os-specific/linux/sysdig/default.nix b/pkgs/os-specific/linux/sysdig/default.nix index 5a7d07000046..9478e07468ee 100644 --- a/pkgs/os-specific/linux/sysdig/default.nix +++ b/pkgs/os-specific/linux/sysdig/default.nix @@ -1,15 +1,15 @@ -{stdenv, fetchurl, cmake, luajit, kernel, zlib}: +{stdenv, fetchurl, cmake, luajit, kernel, zlib, ncurses}: let inherit (stdenv.lib) optional optionalString; s = rec { baseName="sysdig"; - version = "0.1.99"; + version = "0.1.101"; name="${baseName}-${version}"; url="https://github.com/draios/sysdig/archive/${version}.tar.gz"; - sha256 = "02faw8s07i7jjydqzqfs0r9lc2qmny3sn26741bz0hmazs9h9w76"; + sha256 = "1dlx1v7wr0i36sbybr4kj8sziyrfxs4pcn6bnl0ljlb5wndy75b9"; }; buildInputs = [ - cmake zlib luajit + cmake zlib luajit ncurses ]; in stdenv.mkDerivation { @@ -22,6 +22,7 @@ stdenv.mkDerivation { cmakeFlags = [ "-DUSE_BUNDLED_LUAJIT=OFF" "-DUSE_BUNDLED_ZLIB=OFF" + "-DUSE_BUNDLED_NCURSES=OFF" ] ++ optional (kernel == null) "-DBUILD_DRIVER=OFF"; preConfigure = '' export INSTALL_MOD_PATH="$out" diff --git a/pkgs/os-specific/linux/wpa_supplicant/default.nix b/pkgs/os-specific/linux/wpa_supplicant/default.nix index c709880af2dc..3cf45697129f 100644 --- a/pkgs/os-specific/linux/wpa_supplicant/default.nix +++ b/pkgs/os-specific/linux/wpa_supplicant/default.nix @@ -84,6 +84,26 @@ stdenv.mkDerivation rec { url = "http://w1.fi/cgit/hostap/patch/?id=8a78e227df1ead19be8e12a4108e448887e64d6f"; sha256 = "1k2mcq1jv8xzi8061ixcz6j56n4i8wbq0vxcvml204q1syy2ika0"; }) + (fetchpatch { + url = http://w1.fi/security/2015-4/0001-EAP-pwd-peer-Fix-payload-length-validation-for-Commi.patch; + sha256 = "1cg4r638s4m9ar9lmzm534y657ppcm8bl1h363kjnng1zbzh8rfb"; + }) + (fetchpatch { + url = http://w1.fi/security/2015-4/0002-EAP-pwd-server-Fix-payload-length-validation-for-Com.patch; + sha256 = "0ky850rg1k9lwd1p4wzyvl2dpi5g7k1mwx1ndjclp4x7bshb6w79"; + }) + (fetchpatch { + url = http://w1.fi/security/2015-4/0003-EAP-pwd-peer-Fix-Total-Length-parsing-for-fragment-r.patch; + sha256 = "0hicw3vk1khk849xil75ckrg1xzbwcva7g01kp0lvab34dwhryy7"; + }) + (fetchpatch { + url = http://w1.fi/security/2015-4/0004-EAP-pwd-server-Fix-Total-Length-parsing-for-fragment.patch; + sha256 = "18d5r3zbwz96n4zzj9r27cv4kvc09zkj9x0p6qji68h8k2pcazxd"; + }) + (fetchpatch { + url = http://w1.fi/security/2015-4/0005-EAP-pwd-peer-Fix-asymmetric-fragmentation-behavior.patch; + sha256 = "1ndzyfpnxpvryiqal4kdic02kg9dgznh65kaqydaqqfj3rbjdqip"; + }) ]; postInstall = '' diff --git a/pkgs/servers/dns/nsd/default.nix b/pkgs/servers/dns/nsd/default.nix index a6bb4171934f..d3f6cc24e3b4 100644 --- a/pkgs/servers/dns/nsd/default.nix +++ b/pkgs/servers/dns/nsd/default.nix @@ -13,11 +13,11 @@ }: stdenv.mkDerivation rec { - name = "nsd-4.1.1"; + name = "nsd-4.1.2"; src = fetchurl { url = "http://www.nlnetlabs.nl/downloads/nsd/${name}.tar.gz"; - sha256 = "b0c3fab40ac7a8b5ffca642bc9e1b424aa72aebd03adf13a1f24ab4874734640"; + sha256 = "0kb4jcckf4di9c88c09vb8ngbq19yh8njrp16yk2cic8p1dvf545"; }; buildInputs = [ libevent openssl ]; diff --git a/pkgs/servers/dns/skydns/default.nix b/pkgs/servers/dns/skydns/default.nix index ba311918c71e..054c5c422e1c 100644 --- a/pkgs/servers/dns/skydns/default.nix +++ b/pkgs/servers/dns/skydns/default.nix @@ -4,15 +4,15 @@ with goPackages; buildGoPackage rec { name = "skydns-${version}"; - version = "2.1.0a"; + version = "2.5.0a"; goPackagePath = "github.com/skynetservices/skydns"; src = fetchFromGitHub { owner = "skynetservices"; repo = "skydns"; - rev = "f5141ee69309fb4c542d5a0b50fc7616370c5c06"; - sha256 = "1bnc9r22kwvmn1bgz7zaidkjqm7pmw99bn5n87r76vcrd7n2a9pd"; + rev = version; + sha256 = "18mw8bcz54i4yrv6pc73s3ffcj1vv9cwnn76c9k0bj1mxp1pmdl2"; }; buildInputs = with goPackages; [ go-etcd rcrowley.go-metrics influxdb go-systemd go-log dns stathat osext etcd ]; diff --git a/pkgs/servers/felix/default.nix b/pkgs/servers/felix/default.nix index c1114232ea8f..17a50506fa92 100644 --- a/pkgs/servers/felix/default.nix +++ b/pkgs/servers/felix/default.nix @@ -13,10 +13,10 @@ stdenv.mkDerivation { mkdir -p $out cp -av * $out ''; - meta = { + meta = with stdenv.lib; { description = "An OSGi gateway"; homepage = http://felix.apache.org; - license = "ASF"; - maintainers = [ stdenv.lib.maintainers.sander ]; + license = licenses.asl20; + maintainers = [ maintainers.sander ]; }; } diff --git a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix index 0e908acd74b3..90d0fb899c31 100644 --- a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix +++ b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, apacheHttpd, jdk }: stdenv.mkDerivation rec { - name = "tomcat-connectors-1.2.40"; + name = "tomcat-connectors-1.2.41-dev-1613051"; src = fetchurl { - url = "http://www.apache.si/tomcat/tomcat-connectors/jk/${name}-src.tar.gz"; - sha256 = "0pbh6s19ba5k2kahiiqgx8lz8v4fjllzn0w6hjd08x7z9my38pl9"; + url = "http://people.apache.org/~rjung/mod_jk-dev/${name}-src.tar.gz"; + sha256 = "11khipjpy3y84j1pp7yyx76y64jccvyhh3klwzqxylff49vjc2fc"; }; configureFlags = "--with-apxs=${apacheHttpd}/bin/apxs --with-java-home=${jdk}"; diff --git a/pkgs/servers/http/jboss/default.nix b/pkgs/servers/http/jboss/default.nix index 86d371898872..d0d336ad08e6 100644 --- a/pkgs/servers/http/jboss/default.nix +++ b/pkgs/servers/http/jboss/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, unzip, jdk, lib }: +{ stdenv, fetchurl, unzip, jdk }: stdenv.mkDerivation { name = "jboss-as-7.1.1.Final"; @@ -16,10 +16,10 @@ stdenv.mkDerivation { find $out/bin -name \*.sh -print0 | xargs -0 sed -i -e '/#!\/bin\/sh/aJAVA_HOME=${jdk}' ''; - meta = { - homepage = "http://www.jboss.org/"; + meta = with stdenv.lib; { + homepage = http://www.jboss.org/; description = "Open Source J2EE application server"; - license = "GPL/LGPL"; - maintainers = [ lib.maintainers.sander ]; + license = licenses.lgpl21; + maintainers = [ maintainers.sander ]; }; } diff --git a/pkgs/servers/http/jetty/9.2.nix b/pkgs/servers/http/jetty/9.2.nix index 41afc9b40af8..4ac38e8d3cb1 100644 --- a/pkgs/servers/http/jetty/9.2.nix +++ b/pkgs/servers/http/jetty/9.2.nix @@ -4,9 +4,9 @@ stdenv.mkDerivation rec { name = "jetty-9.2.5"; src = fetchurl { - url = "http://eclipse.org/downloads/download.php?file=/jetty/stable-9/dist/jetty-distribution-9.2.5.v20141112.tar.gz&r=1"; - name = "jetty-distribution-9.2.5.v20141112.tar.gz"; - sha256 = "1azqhvvqm9il5n07vms5vv27vr3qhmsy44nmqcgsaggq7p37swf1"; + url = "http://eclipse.org/downloads/download.php?file=/jetty/stable-9/dist/jetty-distribution-9.2.11.v20150529.tar.gz&r=1"; + name = "jetty-distribution-9.2.11.v20150529.tar.gz"; + sha256 = "1d9s9l64b1l3x6vkx8qwgzfqwm55iq5g9xjjm2h2akf494yx1mrd"; }; phases = [ "unpackPhase" "installPhase" ]; diff --git a/pkgs/servers/http/nginx/unstable.nix b/pkgs/servers/http/nginx/unstable.nix index d9d9857e33b8..ae8e2785d5fd 100644 --- a/pkgs/servers/http/nginx/unstable.nix +++ b/pkgs/servers/http/nginx/unstable.nix @@ -10,10 +10,10 @@ with stdenv.lib; let - version = "1.9.0"; + version = "1.9.1"; mainSrc = fetchurl { url = "http://nginx.org/download/nginx-${version}.tar.gz"; - sha256 = "0j7j4yfz39jl433ci9wgxnz3y70pr93vxixw1s4dxv81nzas2ap1"; + sha256 = "1b8xikrr19p07n28xnar8p8l0vgm7795lmrb2x7r9h4lwvx5bx89"; }; rtmp-ext = fetchFromGitHub { diff --git a/pkgs/servers/memcached/default.nix b/pkgs/servers/memcached/default.nix index 74033be8cf86..294cb003ab43 100644 --- a/pkgs/servers/memcached/default.nix +++ b/pkgs/servers/memcached/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { buildInputs = [cyrus_sasl libevent]; - meta = { + meta = with stdenv.lib; { description = "A distributed memory object caching system"; repositories.git = https://github.com/memcached/memcached.git; homepage = http://memcached.org/; - license = "bsd"; - maintainers = [ stdenv.lib.maintainers.coconnor ]; - platforms = stdenv.lib.platforms.linux; + license = licenses.bsd3; + maintainers = [ maintainers.coconnor ]; + platforms = platforms.linux; }; } diff --git a/pkgs/servers/monitoring/bosun/default.nix b/pkgs/servers/monitoring/bosun/default.nix index 807ee7022672..dfb2ffbb8386 100644 --- a/pkgs/servers/monitoring/bosun/default.nix +++ b/pkgs/servers/monitoring/bosun/default.nix @@ -3,14 +3,14 @@ with goPackages; buildGoPackage rec { - rev = "20150506172827"; + rev = "0.2.0"; name = "bosun-${rev}"; goPackagePath = "bosun.org"; src = fetchFromGitHub { inherit rev; owner = "bosun-monitor"; repo = "bosun"; - sha256 = "0rnfiv9b835b8j8r9qh9j2mz9mm9q45vfg9cqa4nngrgfd0cqvl8"; + sha256 = "146k37zg4l01l10vwhnhjs6jv8d35zf5l5rljmvy9ydq2npadsjd"; }; subPackages = [ "cmd/bosun" ]; diff --git a/pkgs/servers/monitoring/zabbix/2.0.nix b/pkgs/servers/monitoring/zabbix/2.0.nix index 9ce027409fdf..0aa32a66f0a5 100644 --- a/pkgs/servers/monitoring/zabbix/2.0.nix +++ b/pkgs/servers/monitoring/zabbix/2.0.nix @@ -78,13 +78,13 @@ in configureFlags = "--enable-agent"; - meta = { + meta = with stdenv.lib; { inherit branch; description = "An enterprise-class open source distributed monitoring solution (client-side agent)"; homepage = http://www.zabbix.com/; - license = "GPL"; - maintainers = [ stdenv.lib.maintainers.eelco ]; - platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; + license = licenses.gpl2; + maintainers = [ maintainers.eelco ]; + platforms = platforms.linux ++ platforms.darwin; }; }; diff --git a/pkgs/servers/monitoring/zabbix/2.2.nix b/pkgs/servers/monitoring/zabbix/2.2.nix index 1e8d03ec2b66..139786ba59d0 100644 --- a/pkgs/servers/monitoring/zabbix/2.2.nix +++ b/pkgs/servers/monitoring/zabbix/2.2.nix @@ -90,13 +90,13 @@ in configureFlags = "--enable-agent"; - meta = { + meta = with stdenv.lib; { inherit branch; description = "An enterprise-class open source distributed monitoring solution (client-side agent)"; homepage = http://www.zabbix.com/; - license = "GPL"; - maintainers = [ stdenv.lib.maintainers.eelco ]; - platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; + license = licenses.gpl2; + maintainers = [ maintainers.eelco ]; + platforms = platforms.linux ++ platforms.darwin; }; }; diff --git a/pkgs/servers/monitoring/zabbix/default.nix b/pkgs/servers/monitoring/zabbix/default.nix index 5d8541ab870e..0aa74599c3a4 100644 --- a/pkgs/servers/monitoring/zabbix/default.nix +++ b/pkgs/servers/monitoring/zabbix/default.nix @@ -57,12 +57,12 @@ in configureFlags = "--enable-agent"; - meta = { + meta = with stdenv.lib; { description = "An enterprise-class open source distributed monitoring solution (client-side agent)"; homepage = http://www.zabbix.com/; - license = "GPL"; - maintainers = [ stdenv.lib.maintainers.eelco ]; - platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; + license = licenses.gpl2; + maintainers = [ maintainers.eelco ]; + platforms = platforms.linux ++ platforms.darwin; }; }; diff --git a/pkgs/servers/nosql/cassandra/2.0.nix b/pkgs/servers/nosql/cassandra/2.0.nix index a0392d0f95ab..4f27452a0653 100644 --- a/pkgs/servers/nosql/cassandra/2.0.nix +++ b/pkgs/servers/nosql/cassandra/2.0.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { url = "http://apache.cs.utah.edu/cassandra/${version}/apache-${name}-bin.tar.gz"; }; - buildInputs = [ makeWrapper ]; + nativeBuildInputs = [ makeWrapper ]; installPhase = '' mkdir $out diff --git a/pkgs/servers/nosql/cassandra/2.1.nix b/pkgs/servers/nosql/cassandra/2.1.nix index 5d99af41cb21..94f920ffe11d 100644 --- a/pkgs/servers/nosql/cassandra/2.1.nix +++ b/pkgs/servers/nosql/cassandra/2.1.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { url = "http://apache.cs.utah.edu/cassandra/${version}/apache-${name}-bin.tar.gz"; }; - buildInputs = [ makeWrapper ]; + nativeBuildInputs = [ makeWrapper ]; installPhase = '' mkdir $out diff --git a/pkgs/servers/nosql/mongodb/default.nix b/pkgs/servers/nosql/mongodb/default.nix index a465d1c4a592..153f2f584d1e 100644 --- a/pkgs/servers/nosql/mongodb/default.nix +++ b/pkgs/servers/nosql/mongodb/default.nix @@ -4,7 +4,7 @@ with stdenv.lib; -let version = "3.0.3"; +let version = "3.0.4"; system-libraries = [ "pcre" "wiredtiger" @@ -36,7 +36,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "http://downloads.mongodb.org/src/mongodb-src-r${version}.tar.gz"; - sha256 = "01q8fas8afch50h4kjdrdrcrb1qx243wafz6zdsbc2waq60mlxjp"; + sha256 = "0q23hvi0axc14s1ah1p67rxvi36skw34kj9ahpijx2dd2a5smrvd"; }; nativeBuildInputs = [ scons ]; diff --git a/pkgs/servers/nosql/redis/3.0.nix b/pkgs/servers/nosql/redis/3.0.nix index 0e7a7d0f2507..ae5a98d5f0ae 100644 --- a/pkgs/servers/nosql/redis/3.0.nix +++ b/pkgs/servers/nosql/redis/3.0.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - version = "3.0.1"; + version = "3.0.2"; name = "redis-${version}"; src = fetchurl { url = "https://github.com/antirez/redis/archive/${version}.tar.gz"; - sha256 = "1m34s60qvj1xyqw7x7ar0graw52wypx47dhvfb0br67vfb62l8sl"; + sha256 = "00gazq98ccz64l4l5vzpynyk5wg15iwmwwvznaarkwm99b9rsz4g"; }; makeFlags = "PREFIX=$(out)"; diff --git a/pkgs/servers/nosql/rethinkdb/default.nix b/pkgs/servers/nosql/rethinkdb/default.nix index 79343b044836..2f47d542d00e 100644 --- a/pkgs/servers/nosql/rethinkdb/default.nix +++ b/pkgs/servers/nosql/rethinkdb/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "rethinkdb-${version}"; - version = "2.0.0-1"; + version = "2.0.3"; src = fetchurl { url = "http://download.rethinkdb.com/dist/${name}.tgz"; - sha256 = "0fbxs6gmlmgkbfrmi0f4xyr3vqwylr6i7fa4p68y12qy6kv7q9pc"; + sha256 = "1580h5clkw8kprdb9waaf8al3wa2vj5d2l2m394r91fq45ss23sd"; }; preConfigure = '' diff --git a/pkgs/servers/sql/postgresql/9.0.x.nix b/pkgs/servers/sql/postgresql/9.0.x.nix index f1abfa3fb0fe..ef7e5d3797fe 100644 --- a/pkgs/servers/sql/postgresql/9.0.x.nix +++ b/pkgs/servers/sql/postgresql/9.0.x.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, zlib, readline, openssl }: -let version = "9.0.20"; in +let version = "9.0.22"; in stdenv.mkDerivation rec { name = "postgresql-${version}"; src = fetchurl { url = "mirror://postgresql/source/v${version}/${name}.tar.bz2"; - sha256 = "0vxa90d1ghv6vg4c6kxvm2skypahvlq4sd968q7l9ff3dl145z02"; + sha256 = "19gq6axjhvlr5zlrzwnll1fbrvai4xh0nb1jki6gmmschl6v5m4l"; }; buildInputs = [ zlib readline openssl ]; diff --git a/pkgs/servers/sql/postgresql/9.1.x.nix b/pkgs/servers/sql/postgresql/9.1.x.nix index 93bf5e1e7164..7616f92ca624 100644 --- a/pkgs/servers/sql/postgresql/9.1.x.nix +++ b/pkgs/servers/sql/postgresql/9.1.x.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, zlib, readline, openssl }: -let version = "9.1.16"; in +let version = "9.1.18"; in stdenv.mkDerivation rec { name = "postgresql-${version}"; src = fetchurl { url = "mirror://postgresql/source/v${version}/${name}.tar.bz2"; - sha256 = "0mllj1r1648iwm0qj3cj9qxizhlyhqmz94iydnwhf48psvvy4r9b"; + sha256 = "1a44hmcvfaa8j169ladsibmvjakw6maaxqkzz1ab8139cqkda9i7"; }; buildInputs = [ zlib readline openssl ]; diff --git a/pkgs/servers/sql/postgresql/9.2.x.nix b/pkgs/servers/sql/postgresql/9.2.x.nix index e04309fc4664..51a265da7854 100644 --- a/pkgs/servers/sql/postgresql/9.2.x.nix +++ b/pkgs/servers/sql/postgresql/9.2.x.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, zlib, readline, openssl }: -let version = "9.2.11"; in +let version = "9.2.13"; in stdenv.mkDerivation rec { name = "postgresql-${version}"; src = fetchurl { url = "mirror://postgresql/source/v${version}/${name}.tar.bz2"; - sha256 = "1k5i73ninqyz76zzpi06ajj5qawf30zwr16x8wrgq6swzvsgbck5"; + sha256 = "0i3avdr8mnvn6ldkx0hc4jmclhisb2338hzs0j2m03wck8hddjsx"; }; buildInputs = [ zlib readline openssl ]; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { makeFlags = [ "world" ]; - configureFlags = [ "--with-openssl" ]; + configureFlags = stdenv.lib.optionals (!stdenv.isCygwin) [ "--with-openssl" ]; patches = [ ./disable-resolve_symlinks.patch ./less-is-more.patch ]; diff --git a/pkgs/servers/sql/postgresql/9.3.x.nix b/pkgs/servers/sql/postgresql/9.3.x.nix index 71f3d7a826f7..3e0b7d4a76ef 100644 --- a/pkgs/servers/sql/postgresql/9.3.x.nix +++ b/pkgs/servers/sql/postgresql/9.3.x.nix @@ -2,14 +2,14 @@ with stdenv.lib; -let version = "9.3.7"; in +let version = "9.3.9"; in stdenv.mkDerivation rec { name = "postgresql-${version}"; src = fetchurl { url = "mirror://postgresql/source/v${version}/${name}.tar.bz2"; - sha256 = "0ggz0i91znv053zx9qas7pjf93s5by3dk84z1jxbjkg8yyrnlx4b"; + sha256 = "0j85j69rf54cwz5yhrhk4ca22b82990j5sqb8cr1fl9843nd0fzp"; }; buildInputs = [ zlib readline openssl ] diff --git a/pkgs/servers/sql/postgresql/9.4.x.nix b/pkgs/servers/sql/postgresql/9.4.x.nix index f1834d301def..5c795329b2d4 100644 --- a/pkgs/servers/sql/postgresql/9.4.x.nix +++ b/pkgs/servers/sql/postgresql/9.4.x.nix @@ -2,14 +2,14 @@ with stdenv.lib; -let version = "9.4.2"; in +let version = "9.4.4"; in stdenv.mkDerivation rec { name = "postgresql-${version}"; src = fetchurl { url = "mirror://postgresql/source/v${version}/${name}.tar.bz2"; - sha256 = "04adpfg2f7ip96rh3jjygx5cpgasrrp1dl2wswjivfk5q68s3zc1"; + sha256 = "04q07g209y99xzjh88y52qpvz225rxwifv8nzp3bxzfni2bdk3jk"; }; buildInputs = [ zlib readline openssl ] diff --git a/pkgs/servers/sql/postgresql/jdbc/default.nix b/pkgs/servers/sql/postgresql/jdbc/default.nix index 61b12164f245..ba5a9ead698f 100644 --- a/pkgs/servers/sql/postgresql/jdbc/default.nix +++ b/pkgs/servers/sql/postgresql/jdbc/default.nix @@ -20,9 +20,9 @@ stdenv.mkDerivation rec { cp jars/*.jar $out/share/java ''; - meta = { + meta = with stdenv.lib; { homepage = http://jdbc.postgresql.org/; description = "JDBC driver for PostgreSQL allowing Java programs to connect to a PostgreSQL database"; - license = "bsd"; + license = licenses.bsd3; }; } diff --git a/pkgs/servers/sql/postgresql/psqlodbc/default.nix b/pkgs/servers/sql/postgresql/psqlodbc/default.nix index ce57c2141834..72221c0eec01 100644 --- a/pkgs/servers/sql/postgresql/psqlodbc/default.nix +++ b/pkgs/servers/sql/postgresql/psqlodbc/default.nix @@ -12,9 +12,9 @@ stdenv.mkDerivation rec { configureFlags = "--with-iodbc=${libiodbc}"; - meta = { + meta = with stdenv.lib; { homepage = http://psqlodbc.projects.postgresql.org/; description = "ODBC driver for PostgreSQL"; - license = "LGPL"; + license = licenses.lgpl2; }; } diff --git a/pkgs/servers/x11/xorg/overrides.nix b/pkgs/servers/x11/xorg/overrides.nix index e7a5bdb1018a..b5b58ab320c4 100644 --- a/pkgs/servers/x11/xorg/overrides.nix +++ b/pkgs/servers/x11/xorg/overrides.nix @@ -417,6 +417,7 @@ in xf86videointel = attrs: attrs // { buildInputs = attrs.buildInputs ++ [xorg.libXfixes]; + patches = [ ./xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch ]; }; xwd = attrs: attrs // { diff --git a/pkgs/servers/x11/xorg/xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch b/pkgs/servers/x11/xorg/xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch new file mode 100644 index 000000000000..ea3aa30ed13c --- /dev/null +++ b/pkgs/servers/x11/xorg/xf86-video-intel-2.99.917-libdrm-kernel-4_0-crash.patch @@ -0,0 +1,65 @@ +From 7fe2b2948652443ff43d907855bd7a051d54d309 Mon Sep 17 00:00:00 2001 +From: Chris Wilson <chris@chris-wilson.co.uk> +Date: Thu, 19 Mar 2015 23:14:17 +0000 +Subject: sna: Protect against ABI breakage in recent versions of libdrm + +Signed-off-by: Chris Wilson <chris@chris-wilson.co.uk> + +diff --git a/src/sna/kgem.c b/src/sna/kgem.c +index 11f0828..6f16cba 100644 +--- a/src/sna/kgem.c ++++ b/src/sna/kgem.c +@@ -182,6 +182,15 @@ struct local_i915_gem_caching { + #define LOCAL_IOCTL_I915_GEM_SET_CACHING DRM_IOW(DRM_COMMAND_BASE + LOCAL_I915_GEM_SET_CACHING, struct local_i915_gem_caching) + #define LOCAL_IOCTL_I915_GEM_GET_CACHING DRM_IOW(DRM_COMMAND_BASE + LOCAL_I915_GEM_GET_CACHING, struct local_i915_gem_caching) + ++struct local_i915_gem_mmap { ++ uint32_t handle; ++ uint32_t pad; ++ uint64_t offset; ++ uint64_t size; ++ uint64_t addr_ptr; ++}; ++#define LOCAL_IOCTL_I915_GEM_MMAP DRM_IOWR(DRM_COMMAND_BASE + DRM_I915_GEM_MMAP, struct local_i915_gem_mmap) ++ + struct local_i915_gem_mmap2 { + uint32_t handle; + uint32_t pad; +@@ -514,15 +523,15 @@ retry_wc: + + static void *__kgem_bo_map__cpu(struct kgem *kgem, struct kgem_bo *bo) + { +- struct drm_i915_gem_mmap mmap_arg; ++ struct local_i915_gem_mmap arg; + int err; + + retry: +- VG_CLEAR(mmap_arg); +- mmap_arg.handle = bo->handle; +- mmap_arg.offset = 0; +- mmap_arg.size = bytes(bo); +- if ((err = do_ioctl(kgem->fd, DRM_IOCTL_I915_GEM_MMAP, &mmap_arg))) { ++ VG_CLEAR(arg); ++ arg.handle = bo->handle; ++ arg.offset = 0; ++ arg.size = bytes(bo); ++ if ((err = do_ioctl(kgem->fd, LOCAL_IOCTL_I915_GEM_MMAP, &arg))) { + assert(err != EINVAL); + + if (__kgem_throttle_retire(kgem, 0)) +@@ -536,10 +545,10 @@ retry: + return NULL; + } + +- VG(VALGRIND_MAKE_MEM_DEFINED(mmap_arg.addr_ptr, bytes(bo))); ++ VG(VALGRIND_MAKE_MEM_DEFINED(arg.addr_ptr, bytes(bo))); + + DBG(("%s: caching CPU vma for %d\n", __FUNCTION__, bo->handle)); +- return bo->map__cpu = (void *)(uintptr_t)mmap_arg.addr_ptr; ++ return bo->map__cpu = (void *)(uintptr_t)arg.addr_ptr; + } + + static int gem_write(int fd, uint32_t handle, +-- +cgit v0.10.2 + diff --git a/pkgs/tools/X11/ratmen/default.nix b/pkgs/tools/X11/ratmen/default.nix new file mode 100644 index 000000000000..19e5fe69da5b --- /dev/null +++ b/pkgs/tools/X11/ratmen/default.nix @@ -0,0 +1,35 @@ +{stdenv, fetchurl, perl, xproto, libX11}: +let + s = # Generated upstream information + rec { + baseName="ratmen"; + version="2.2.3"; + name="${baseName}-${version}"; + hash="0gnfqhnch9x8jhr87gvdjcp1wsqhchfjilpnqcwx5j0nlqyz6wi6"; + url="http://www.update.uu.se/~zrajm/programs/ratmen/ratmen-2.2.3.tar.gz"; + sha256="0gnfqhnch9x8jhr87gvdjcp1wsqhchfjilpnqcwx5j0nlqyz6wi6"; + }; + buildInputs = [ + perl xproto libX11 + ]; +in +stdenv.mkDerivation { + inherit (s) name version; + inherit buildInputs; + src = fetchurl { + inherit (s) url sha256; + }; + makeFlags = [ + "PREFIX=$(out)" + ]; + meta = { + inherit (s) version; + description = ''A minimalistic X11 menu creator''; + license = stdenv.lib.licenses.free ; # 9menu derivative with 9menu license + maintainers = [stdenv.lib.maintainers.raskin]; + platforms = stdenv.lib.platforms.linux; + homepage = "http://www.update.uu.se/~zrajm/programs/"; + downloadPage = "http://www.update.uu.se/~zrajm/programs/ratmen/"; + updateWalker = true; + }; +} diff --git a/pkgs/tools/X11/skippy-xd/default.nix b/pkgs/tools/X11/skippy-xd/default.nix new file mode 100644 index 000000000000..b3e9ad759f19 --- /dev/null +++ b/pkgs/tools/X11/skippy-xd/default.nix @@ -0,0 +1,30 @@ +{stdenv, fetchgit, xproto, libX11, libXft, libXcomposite, libXdamage +, libXext, xextproto, libXinerama, libjpeg, giflib, pkgconfig +}: +let + buildInputs = [ + xproto libX11 libXft libXcomposite libXdamage libXext xextproto + libXinerama libjpeg giflib pkgconfig + ]; +in +stdenv.mkDerivation rec { + version = "git-2015-03-01"; + name = "skippy-xd-${version}"; + inherit buildInputs; + src = fetchgit { + url = "https://github.com/richardgv/skippy-xd/"; + rev = "397216ca67"; + sha256 = "19lvy5888j7rl52dsxv1wwxxijdlk8d7qn1zzzy0b8wvqknhxypm"; + }; + makeFlags = ["PREFIX=$(out)"]; + preInstall = '' + sed -e "s@/etc/xdg@$out&@" -i Makefile + ''; + meta = { + inherit version; + description = ''Expose-style compositing-based standalone window switcher''; + license = stdenv.lib.licenses.gpl2Plus ; + maintainers = [stdenv.lib.maintainers.raskin]; + platforms = stdenv.lib.platforms.linux; + }; +} diff --git a/pkgs/tools/X11/xcape/default.nix b/pkgs/tools/X11/xcape/default.nix index 272f1ca0907c..35d353d9861b 100644 --- a/pkgs/tools/X11/xcape/default.nix +++ b/pkgs/tools/X11/xcape/default.nix @@ -3,7 +3,7 @@ let s = rec { baseName = "xcape"; - version = "git-2013-05-30"; + version = "git-2015-03-01"; name = "${baseName}-${version}"; }; buildInputs = [ @@ -15,8 +15,8 @@ stdenv.mkDerivation { inherit buildInputs; src = fetchgit { url = https://github.com/alols/xcape; - rev = "39aa08c5da354a8fe495eba8787a01957cfa5fcb"; - sha256 = "1yh0vbaj4c5lflxm3d4xrfaric1lp0gfcyzq33bqphpsba439bmg"; + rev = "f3802fc086ce9d961d644a5d29ad5b650db56215"; + sha256 = "05mm4ap69ncwl4hhzf2dvbazqxjf27477cd3chpfc7qi7srqasvz"; }; preConfigure = '' makeFlags="$makeFlags PREFIX=$out" diff --git a/pkgs/tools/X11/xdg-utils/default.nix b/pkgs/tools/X11/xdg-utils/default.nix index 53b3531b685c..5f5619002d61 100644 --- a/pkgs/tools/X11/xdg-utils/default.nix +++ b/pkgs/tools/X11/xdg-utils/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchgit, file, libxslt, docbook_xml_dtd_412, docbook_xsl, xmlto, w3m }: +{ stdenv, fetchgit, file, libxslt, docbook_xml_dtd_412, docbook_xsl, xmlto +, w3m, which, gnugrep, gnused, coreutils }: stdenv.mkDerivation rec { name = "xdg-utils-1.1.0-rc3p7"; @@ -13,7 +14,14 @@ stdenv.mkDerivation rec { buildInputs = [ libxslt docbook_xml_dtd_412 docbook_xsl xmlto w3m ]; postInstall = '' - substituteInPlace $out/bin/xdg-mime --replace /usr/bin/file ${file}/bin/file + for item in $out/bin/*; do + substituteInPlace $item --replace "cut " "${coreutils}/bin/cut " + substituteInPlace $item --replace "sed " "${gnused}/bin/sed " + substituteInPlace $item --replace "grep " "${gnugrep}/bin/grep " + substituteInPlace $item --replace "egrep " "${gnugrep}/bin/egrep " + substituteInPlace $item --replace "which " "${which}/bin/which " + substituteInPlace $item --replace "/usr/bin/file" "${file}/bin/file" + done ''; meta = { diff --git a/pkgs/tools/X11/xwinmosaic/default.nix b/pkgs/tools/X11/xwinmosaic/default.nix new file mode 100644 index 000000000000..95f351297548 --- /dev/null +++ b/pkgs/tools/X11/xwinmosaic/default.nix @@ -0,0 +1,23 @@ +{stdenv, fetchgit, gtk2, cmake, pkgconfig}: +let + buildInputs = [ + gtk2 cmake pkgconfig + ]; +in +stdenv.mkDerivation rec { + version = "0.4.2"; + name = "xwinmosaic-${version}"; + inherit buildInputs; + src = fetchgit { + url = "https://github.com/soulthreads/xwinmosaic/"; + rev = "refs/tags/v0.4.2"; + sha256 = "0ddriqx4idyp55v8js5xazmhl09jwkmnv5nlfzhs2cpvshcj56ri"; + }; + meta = { + inherit version; + description = ''X window switcher drawing a colourful grid''; + license = stdenv.lib.licenses.bsd2 ; + maintainers = [stdenv.lib.maintainers.raskin]; + platforms = stdenv.lib.platforms.linux; + }; +} diff --git a/pkgs/tools/admin/nxproxy/0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch b/pkgs/tools/admin/nxproxy/0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch new file mode 100644 index 000000000000..3d4c584fb078 --- /dev/null +++ b/pkgs/tools/admin/nxproxy/0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch @@ -0,0 +1,67 @@ +commit f982cbc85e9ffff24a6a348c3637b54a7e8cbc34 +Author: Vadim Troshchinskiy <vtroshchinskiy@qindel.com> +Date: Wed May 20 15:47:45 2015 +0200 + +Fix negotiation in stage 10 error + +Problem fixed by adding a select() call to implement a timeout, +and retrying writes if needed. + +v2: backport to nx-libs 3.5.0.x (Mihai Moldovan) + +--- a/nxcomp/Loop.cpp ++++ b/nxcomp/Loop.cpp +@@ -8073,16 +8073,52 @@ int ReadRemoteData(int fd, char *buffer, + int WriteLocalData(int fd, const char *buffer, int size) + { + int position = 0; ++ int ret = 0; ++ fd_set writeSet; ++ struct timeval selectTs = {30, 0}; + + while (position < size) + { ++ ++ // A write to a non-blocking socket may fail with EAGAIN. The problem is ++ // that cache data is done in several writes, and there's no easy way ++ // to handle failure without rewriting a significant amount of code. ++ // ++ // Bailing out of the outer loop would result in restarting the sending ++ // of the entire cache list, which would confuse the other side. ++ ++ FD_ZERO(&writeSet); ++ FD_SET(fd, &writeSet); ++ ++ ret = select(fd+1, NULL, &writeSet, NULL, &selectTs); ++ ++ #ifdef DEBUG ++ *logofs << "Loop: WriteLocalData: select() returned with a code of " << ret << " and remaining timeout of " ++ << selectTs.tv_sec << " sec, " << selectTs.tv_usec << "usec\n" << logofs_flush; ++ #endif ++ ++ if ( ret < 0 ) ++ { ++ *logofs << "Loop: Error in select() when writing data to FD#" << fd << ": " << strerror(EGET()) << "\n" << logofs_flush; ++ ++ if ( EGET() == EINTR ) ++ continue; ++ ++ return -1; ++ } ++ else if ( ret == 0 ) ++ { ++ *logofs << "Loop: Timeout expired in select() when writing data to FD#" << fd << ": " << strerror(EGET()) << "\n" << logofs_flush; ++ return -1; ++ } ++ + int result = write(fd, buffer + position, size - position); + + getNewTimestamp(); + + if (result <= 0) + { +- if (result < 0 && EGET() == EINTR) ++ if (result < 0 && (EGET() == EINTR || EGET() == EAGAIN || EGET() == EWOULDBLOCK)) + { + continue; + } diff --git a/pkgs/tools/admin/nxproxy/default.nix b/pkgs/tools/admin/nxproxy/default.nix index 6da78f60630c..20b8f4059ad8 100644 --- a/pkgs/tools/admin/nxproxy/default.nix +++ b/pkgs/tools/admin/nxproxy/default.nix @@ -17,7 +17,12 @@ stdenv.mkDerivation { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ autoreconfHook libxcomp ]; + patches = [ + ./0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch + ]; + + buildInputs = [ libxcomp ]; + nativeBuildInputs = [ autoreconfHook ]; preAutoreconf = '' cd nxproxy/ diff --git a/pkgs/tools/compression/lzop/default.nix b/pkgs/tools/compression/lzop/default.nix index 383b7a0e079c..7d49bde68c11 100644 --- a/pkgs/tools/compression/lzop/default.nix +++ b/pkgs/tools/compression/lzop/default.nix @@ -9,9 +9,9 @@ stdenv.mkDerivation { buildInputs = [ lzo ]; - meta = { + meta = with stdenv.lib; { homepage = http://www.lzop.org; description = "Fast file compressor"; - license = "GPL"; + license = licenses.gpl2; }; } diff --git a/pkgs/tools/compression/xdelta/default.nix b/pkgs/tools/compression/xdelta/default.nix index 5355138ac8c4..68c4ea809bed 100644 --- a/pkgs/tools/compression/xdelta/default.nix +++ b/pkgs/tools/compression/xdelta/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { owner = "jmacd"; }; - buildInputs = [ autoreconfHook ]; + nativeBuildInputs = [ autoreconfHook ]; postPatch = '' cd xdelta3 diff --git a/pkgs/tools/filesystems/boxfs/default.nix b/pkgs/tools/filesystems/boxfs/default.nix index 69c2d046f1c1..e82e720c11bd 100644 --- a/pkgs/tools/filesystems/boxfs/default.nix +++ b/pkgs/tools/filesystems/boxfs/default.nix @@ -34,7 +34,8 @@ in stdenv.mkDerivation { patches = [ ./work-around-API-borkage.patch ]; - buildInputs = [ curl fuse libxml2 pkgconfig ]; + buildInputs = [ curl fuse libxml2 ]; + nativeBuildInputs = [ pkgconfig ]; buildFlags = "static"; diff --git a/pkgs/tools/filesystems/dosfstools/default.nix b/pkgs/tools/filesystems/dosfstools/default.nix index 6bd6bfe368c0..76df4f41257b 100644 --- a/pkgs/tools/filesystems/dosfstools/default.nix +++ b/pkgs/tools/filesystems/dosfstools/default.nix @@ -1,11 +1,14 @@ -{ stdenv, fetchurl }: +{ stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - name = "dosfstools-3.0.26"; + name = "dosfstools-${version}"; + version = "3.0.28"; - src = fetchurl { - url = "http://daniel-baumann.ch/files/software/dosfstools/${name}.tar.xz"; - sha256 = "0x9yi6s1419k678pr9h3a5bjccbrcxxpzmjwgl262ffrikz45126"; + src = fetchFromGitHub { + owner = "dosfstools"; + repo = "dosfstools"; + rev = "v${version}"; + sha256 = "0lqirpxcn8ml0anq8aqmaljfsji9h6mdzz0jrs0yqqfhgg90bkg2"; }; makeFlags = "PREFIX=$(out)"; diff --git a/pkgs/tools/filesystems/duff/default.nix b/pkgs/tools/filesystems/duff/default.nix index 59cb07dead0f..edb69aaef5cf 100644 --- a/pkgs/tools/filesystems/duff/default.nix +++ b/pkgs/tools/filesystems/duff/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { owner = "elmindreda"; }; - buildInputs = [ autoreconfHook gettext ]; + nativeBuildInputs = [ autoreconfHook gettext ]; preAutoreconf = '' # duff is currently badly packaged, requiring us to do extra work here that diff --git a/pkgs/tools/filesystems/encfs/default.nix b/pkgs/tools/filesystems/encfs/default.nix index 211690606efe..d85440c5475e 100644 --- a/pkgs/tools/filesystems/encfs/default.nix +++ b/pkgs/tools/filesystems/encfs/default.nix @@ -12,7 +12,8 @@ stdenv.mkDerivation rec { owner = "vgough"; }; - buildInputs = [ autoreconfHook boost fuse openssl perl pkgconfig rlog ]; + buildInputs = [ boost fuse openssl rlog ]; + nativeBuildInputs = [ autoreconfHook perl pkgconfig ]; configureFlags = [ "--with-boost-serialization=boost_wserialization" diff --git a/pkgs/tools/filesystems/exfat-utils/default.nix b/pkgs/tools/filesystems/exfat-utils/default.nix index 3215b0d9174d..eb7977c71a3b 100644 --- a/pkgs/tools/filesystems/exfat-utils/default.nix +++ b/pkgs/tools/filesystems/exfat-utils/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ nckx ]; }; - buildInputs = [ scons ]; + nativeBuildInputs = [ scons ]; buildPhase = '' export CCFLAGS="-std=c99" diff --git a/pkgs/tools/filesystems/fuse-exfat/default.nix b/pkgs/tools/filesystems/fuse-exfat/default.nix index ae9f9e32fa88..ef8bf5845dd6 100644 --- a/pkgs/tools/filesystems/fuse-exfat/default.nix +++ b/pkgs/tools/filesystems/fuse-exfat/default.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation rec { name = "${name}.tar.gz"; }; - buildInputs = [ pkgconfig fuse scons ]; + buildInputs = [ fuse ]; + nativeBuildInputs = [ pkgconfig scons ]; buildPhase = '' export CCFLAGS="-O2 -Wall -std=c99 -I${fuse}/include" diff --git a/pkgs/tools/filesystems/glusterfs/default.nix b/pkgs/tools/filesystems/glusterfs/default.nix index bfab9454d6df..57b36875a51d 100644 --- a/pkgs/tools/filesystems/glusterfs/default.nix +++ b/pkgs/tools/filesystems/glusterfs/default.nix @@ -1,18 +1,21 @@ {stdenv, fetchurl, fuse, bison, flex_2_5_35, openssl, python, ncurses, readline, - autoconf, automake, libtool, pkgconfig, zlib, libaio, libxml2}: + autoconf, automake, libtool, pkgconfig, zlib, libaio, libxml2, acl, sqlite + , liburcu, attr +}: let s = # Generated upstream information rec { baseName="glusterfs"; - version="3.6.3"; + version="3.7.1"; name="${baseName}-${version}"; - hash="084zkc1jd5ggkfl0f5d4s7lra5xgildnphyf6ywzxrb7g44vk0d4"; - url="http://download.gluster.org/pub/gluster/glusterfs/3.6/3.6.3/glusterfs-3.6.3.tar.gz"; - sha256="084zkc1jd5ggkfl0f5d4s7lra5xgildnphyf6ywzxrb7g44vk0d4"; + hash="0d1bcijwvc3rhr24xsn7nnp0b5xwlwvybamb05jzja5m7hapydpw"; + url="http://download.gluster.org/pub/gluster/glusterfs/3.7/3.7.1/glusterfs-3.7.1.tar.gz"; + sha256="0d1bcijwvc3rhr24xsn7nnp0b5xwlwvybamb05jzja5m7hapydpw"; }; buildInputs = [ fuse bison flex_2_5_35 openssl python ncurses readline autoconf automake libtool pkgconfig zlib libaio libxml2 + acl sqlite liburcu attr ]; in stdenv.mkDerivation diff --git a/pkgs/tools/filesystems/jmtpfs/default.nix b/pkgs/tools/filesystems/jmtpfs/default.nix index 2a2ff0a47a5d..091270deab66 100644 --- a/pkgs/tools/filesystems/jmtpfs/default.nix +++ b/pkgs/tools/filesystems/jmtpfs/default.nix @@ -17,6 +17,7 @@ stdenv.mkDerivation { description = "A FUSE filesystem for MTP devices like Android phones"; homepage = https://github.com/JasonFerrara/jmtpfs; license = licenses.gpl3; + platforms = platforms.linux; maintainers = [ maintainers.coconnor ]; }; } diff --git a/pkgs/tools/filesystems/mp3fs/default.nix b/pkgs/tools/filesystems/mp3fs/default.nix index 23ee5558e146..8859aa003ebf 100644 --- a/pkgs/tools/filesystems/mp3fs/default.nix +++ b/pkgs/tools/filesystems/mp3fs/default.nix @@ -11,7 +11,8 @@ stdenv.mkDerivation rec { patches = [ ./fix-statfs-operation.patch ]; - buildInputs = [ flac fuse lame libid3tag pkgconfig ]; + buildInputs = [ flac fuse lame libid3tag ]; + nativeBuildInputs = [ pkgconfig ]; enableParallelBuilding = true; diff --git a/pkgs/tools/graphics/asymptote/default.nix b/pkgs/tools/graphics/asymptote/default.nix index 90a7ce9efadf..01f3947cdfac 100644 --- a/pkgs/tools/graphics/asymptote/default.nix +++ b/pkgs/tools/graphics/asymptote/default.nix @@ -7,11 +7,11 @@ let s = # Generated upstream information rec { baseName="asymptote"; - version="2.32"; + version="2.35"; name="${baseName}-${version}"; - hash="19cgn5158p42igjbp8lf6xdbh3yjhlkdm22m5lqrhibp09g06d90"; - url="mirror://sourceforge/project/asymptote/2.32/asymptote-2.32.src.tgz"; - sha256="19cgn5158p42igjbp8lf6xdbh3yjhlkdm22m5lqrhibp09g06d90"; + hash="11f28vxw0ybhvl7vxmqcdwvw7y6gz55ykw9ybgzb2px6lsvgag7z"; + url="http://softlayer-ams.dl.sourceforge.net/project/asymptote/2.35/asymptote-2.35.src.tgz"; + sha256="11f28vxw0ybhvl7vxmqcdwvw7y6gz55ykw9ybgzb2px6lsvgag7z"; }; buildInputs = [ freeglut ghostscriptX imagemagick fftw diff --git a/pkgs/tools/graphics/maim/default.nix b/pkgs/tools/graphics/maim/default.nix new file mode 100644 index 000000000000..425fa5fb6cd2 --- /dev/null +++ b/pkgs/tools/graphics/maim/default.nix @@ -0,0 +1,30 @@ +{ stdenv, fetchurl, cmake, gengetopt, imlib2, libXrandr, libXfixes +, cppcheck}: + +stdenv.mkDerivation rec { + name = "maim-${version}"; + version = "3.3.41"; + + src = fetchurl { + url = "https://github.com/naelstrof/maim/archive/v${version}.tar.gz"; + sha256 = "12p9zd4skxds26hicy6hrxkxnhbqv1c5ys1h6jchaypvwdggcgnc"; + }; + + buildInputs = [ cmake gengetopt imlib2 libXrandr libXfixes ] + ++ stdenv.lib.optional doCheck cppcheck; + + doCheck = false; + + meta = with stdenv.lib; { + homepage = https://github.com/naelstrof/maim; + description = "A command-line screenshot utility"; + longDescription = '' + maim (make image) takes screenshots of your desktop. It has options to + take only a region, and relies on slop to query for regions. maim is + supposed to be an improved scrot. + ''; + platforms = stdenv.lib.platforms.all; + license = stdenv.lib.licenses.gpl3Plus; + maintainers = with maintainers; [ mbakke ]; + }; +} diff --git a/pkgs/tools/graphics/optipng/default.nix b/pkgs/tools/graphics/optipng/default.nix index bc1f86e36612..08f99469d255 100644 --- a/pkgs/tools/graphics/optipng/default.nix +++ b/pkgs/tools/graphics/optipng/default.nix @@ -30,9 +30,9 @@ stdenv.mkDerivation rec { ''; }; - meta = { + meta = with stdenv.lib; { homepage = http://optipng.sourceforge.net/; description = "A PNG optimizer"; - license = "bsd"; + license = licenses.zlib; }; } diff --git a/pkgs/tools/graphics/pdfread/default.nix b/pkgs/tools/graphics/pdfread/default.nix index fd26174f197a..f35553ea168f 100644 --- a/pkgs/tools/graphics/pdfread/default.nix +++ b/pkgs/tools/graphics/pdfread/default.nix @@ -40,9 +40,9 @@ stdenv.mkDerivation { --prefix PATH : ${ghostscript}/bin:${pngnq}/bin:${djvulibre}/bin:${unrar}/bin:${optipng}/bin ''; - meta = { + meta = with stdenv.lib; { description = "PDF/DJVU to ebook format converter"; homepage = http://www.mobileread.com/forums/showthread.php?t=21906; - license = "bsd"; + license = licenses.mit; }; } diff --git a/pkgs/tools/misc/bmon/default.nix b/pkgs/tools/misc/bmon/default.nix index 1a24ba700513..4416c3e1625d 100644 --- a/pkgs/tools/misc/bmon/default.nix +++ b/pkgs/tools/misc/bmon/default.nix @@ -12,6 +12,9 @@ stdenv.mkDerivation rec { sha256 = "16qwazays2j448kmfckv6wvh4rhmhc9q4vp1s75hm9z02cmhvk8q"; }; + # https://github.com/tgraf/bmon/pull/24#issuecomment-98068887 + postPatch = "sed '1i#include <net/if.h>' -i src/in_netlink.c"; + buildInputs = [ autoconf automake pkgconfig ncurses confuse libnl ]; preConfigure = "sh ./autogen.sh"; diff --git a/pkgs/tools/misc/gparted/default.nix b/pkgs/tools/misc/gparted/default.nix index dd2798de2729..847090101184 100644 --- a/pkgs/tools/misc/gparted/default.nix +++ b/pkgs/tools/misc/gparted/default.nix @@ -1,5 +1,6 @@ { stdenv, fetchurl, parted, gtk, glib, intltool, gettext, libuuid -, pkgconfig, gtkmm, libxml2 }: +, pkgconfig, gtkmm, libxml2, hicolor_icon_theme +}: stdenv.mkDerivation rec { name = "gparted-0.22.0"; @@ -11,9 +12,8 @@ stdenv.mkDerivation rec { configureFlags = "--disable-doc"; - buildInputs = [ - parted gtk glib intltool gettext libuuid pkgconfig gtkmm libxml2 - ]; + buildInputs = [ parted gtk glib libuuid gtkmm libxml2 hicolor_icon_theme ]; + nativeBuildInputs = [ intltool gettext pkgconfig ]; meta = with stdenv.lib; { description = "Graphical disk partitioning tool"; diff --git a/pkgs/tools/misc/i3minator/default.nix b/pkgs/tools/misc/i3minator/default.nix index 02b804936549..0c3907b89bfe 100644 --- a/pkgs/tools/misc/i3minator/default.nix +++ b/pkgs/tools/misc/i3minator/default.nix @@ -1,19 +1,6 @@ { stdenv, fetchurl, buildPythonPackage, pythonPackages, python }: -let - i3-py = buildPythonPackage rec { - version = "0.6.4"; - name = "i3-py-${version}"; - - src = fetchurl { - url = "https://pypi.python.org/packages/source/i/i3-py/i3-py-${version}.tar.gz"; - sha256 = "1sgl438jrb4cdyl7hbc3ymwsf7y3zy09g1gh7ynilxpllp37jc8y"; - }; - - # no tests in tarball - doCheck = false; - }; -in buildPythonPackage rec { +buildPythonPackage rec { name = "i3minator-${version}"; version = "0.0.4"; @@ -22,7 +9,7 @@ in buildPythonPackage rec { sha256 = "11dn062788kwfs8k2ry4v8zr2gn40r6lsw770s9g2gvhl5n469dw"; }; - propagatedBuildInputs = [ pythonPackages.pyyaml i3-py ]; + propagatedBuildInputs = [ pythonPackages.pyyaml pythonPackages.i3-py ]; meta = with stdenv.lib; { description = "i3 project manager similar to tmuxinator"; diff --git a/pkgs/tools/misc/rmlint/default.nix b/pkgs/tools/misc/rmlint/default.nix index 9e61a5c195e4..392734e2256d 100644 --- a/pkgs/tools/misc/rmlint/default.nix +++ b/pkgs/tools/misc/rmlint/default.nix @@ -4,11 +4,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "rmlint-${version}"; - version = "2.1.0"; + version = "2.2.0"; src = fetchurl { url = "https://github.com/sahib/rmlint/archive/v${version}.tar.gz"; - sha256 = "17hqkx1ji6rbvliji18my16b23ig9d6v4azgypwl0fam2ar4rm4g"; + sha256 = "1wg6br30ccvxl2189a75lb3d03kg8spfkkp9qlf3whl0xirsm15n"; }; configurePhase = "scons config"; diff --git a/pkgs/tools/misc/screen/default.nix b/pkgs/tools/misc/screen/default.nix index d4377c14fad4..e8a39623d9a6 100644 --- a/pkgs/tools/misc/screen/default.nix +++ b/pkgs/tools/misc/screen/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, ncurses, pam ? null }: stdenv.mkDerivation rec { - name = "screen-4.2.1"; + name = "screen-4.3.0"; src = fetchurl { url = "mirror://gnu/screen/${name}.tar.gz"; - sha256 = "105hp6qdd8rl71p81klmxiz4mlb60kh9r7czayrx40g38x858s2l"; + sha256 = "0ilccnwszaxr9wbrx0swh4fisha2rj2jiq76fwqikmv0rjdyhr2i"; }; preConfigure = '' diff --git a/pkgs/tools/misc/sdl-jstest/default.nix b/pkgs/tools/misc/sdl-jstest/default.nix new file mode 100644 index 000000000000..3da62874c13c --- /dev/null +++ b/pkgs/tools/misc/sdl-jstest/default.nix @@ -0,0 +1,21 @@ +{ fetchgit, stdenv, cmake, pkgconfig, SDL, SDL2, ncurses, docbook_xsl }: + +stdenv.mkDerivation rec { + name = "sdl-jstest-20150611"; + src = fetchgit { + url = "https://github.com/Grumbel/sdl-jstest"; + rev = "684d168e5526da16760dcfc6d40da0103ab284cc"; + sha256 = "fc110a858edc2defc5cd8b176a5ce74666d3957d0268b861d0f9669362a1bd03"; + }; + + buildInputs = [ SDL SDL2 ncurses ]; + nativeBuildInputs = [ cmake pkgconfig docbook_xsl ]; + + meta = with stdenv.lib; { + homepage = https://github.com/Grumbel/sdl-jstest; + description = "Simple SDL joystick test application for the console"; + license = licenses.gpl3; + platforms = platforms.linux; + maintainers = with maintainers; [ abbradar ]; + }; +} diff --git a/pkgs/tools/misc/slop/default.nix b/pkgs/tools/misc/slop/default.nix new file mode 100644 index 000000000000..62ec5ab2d63e --- /dev/null +++ b/pkgs/tools/misc/slop/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchurl, cmake, gengetopt, libX11, libXext, cppcheck}: + +stdenv.mkDerivation rec { + name = "slop-${version}"; + version = "4.1.15"; + + src = fetchurl { + url = "https://github.com/naelstrof/slop/archive/v${version}.tar.gz"; + sha256 = "e20fd47de898abcb537c8100faed859eef4955d7784dbc52470570dae403f02e"; + }; + + buildInputs = [ cmake gengetopt libX11 libXext ] + ++ stdenv.lib.optional doCheck cppcheck; + + doCheck = false; + + meta = with stdenv.lib; { + homepage = https://github.com/naelstrof/slop; + description = "Queries a selection from the user and prints to stdout"; + platforms = stdenv.lib.platforms.all; + license = stdenv.lib.licenses.gpl3Plus; + maintainers = with maintainers; [ mbakke ]; + }; +} diff --git a/pkgs/tools/misc/t1utils/default.nix b/pkgs/tools/misc/t1utils/default.nix index 5e473a5cd093..c00db07ed1f4 100644 --- a/pkgs/tools/misc/t1utils/default.nix +++ b/pkgs/tools/misc/t1utils/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "t1utils-1.38"; + name = "t1utils-1.39"; src = fetchurl { url = "http://www.lcdf.org/type/${name}.tar.gz"; - sha256 = "1pnxpjabjyzfjrp319wsq4acxw99c8nnsaalbz7nwamj8kkim7zw"; + sha256 = "1i6ln194ns2g4j5zjlj4bfzxpkfpnxvy37n9baq3hywjqkjz7bhg"; }; meta = with stdenv.lib; { diff --git a/pkgs/tools/misc/tmux/default.nix b/pkgs/tools/misc/tmux/default.nix index f559c77712af..c906f0a29101 100644 --- a/pkgs/tools/misc/tmux/default.nix +++ b/pkgs/tools/misc/tmux/default.nix @@ -1,10 +1,11 @@ { stdenv, fetchurl, ncurses, libevent, pkgconfig }: stdenv.mkDerivation rec { - name = "tmux-2.0"; + name = "tmux-${version}"; + version = "2.0"; src = fetchurl { - url = "mirror://sourceforge/tmux/${name}.tar.gz"; + url = "https://github.com/tmux/tmux/releases/download/${version}/${name}.tar.gz"; sha256 = "0qnkda8kb747vmbldjpb23ksv9pq3s65xhh1ja5rdsmh8r24npvr"; }; @@ -23,7 +24,7 @@ stdenv.mkDerivation rec { ''; meta = { - homepage = http://tmux.sourceforge.net/; + homepage = http://tmux.github.io/; description = "Terminal multiplexer"; longDescription = diff --git a/pkgs/tools/misc/ttylog/default.nix b/pkgs/tools/misc/ttylog/default.nix index 1c90bb842d62..16db6b62eb7a 100644 --- a/pkgs/tools/misc/ttylog/default.nix +++ b/pkgs/tools/misc/ttylog/default.nix @@ -1,11 +1,14 @@ -{ stdenv, fetchurl, cmake }: +{ stdenv, fetchFromGitHub, cmake }: stdenv.mkDerivation rec { - name = "ttylog-0.25"; + name = "ttylog-${version}"; + version = "0.26"; - src = fetchurl { - url = "mirror://sourceforge/ttylog/${name}.tar.gz"; - sha256 = "0546mj5gcxi7idvfw82p8qw27lk7wsk6j4b6zw7nb6z2wi517l40"; + src = fetchFromGitHub { + owner = "rocasa"; + repo = "ttylog"; + rev = version; + sha256 = "1xvqch1dwpl2d89n9cjcxhqbpvm50fspj5yn883wbii6dpg62p84"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/tools/misc/vdirsyncer/default.nix b/pkgs/tools/misc/vdirsyncer/default.nix index 5312445563a6..abe6a8adc146 100644 --- a/pkgs/tools/misc/vdirsyncer/default.nix +++ b/pkgs/tools/misc/vdirsyncer/default.nix @@ -1,32 +1,30 @@ -{ lib, fetchurl, pythonPackages }: +{ stdenv, fetchurl, pythonPackages }: pythonPackages.buildPythonPackage rec { - version = "0.4.3"; + version = "0.5.2"; name = "vdirsyncer-${version}"; namePrefix = ""; src = fetchurl { url = "https://github.com/untitaker/vdirsyncer/archive/${version}.tar.gz"; - sha256 = "0jrxmq8lq0dvqflmh42hhyvc3jjrg1cg3gzfhdcsskj9zz0m6wai"; + sha256 = "02k6ijj0z0r08l50ignm2ngd4ax84l0r1wshh1is0wcfr70d94h9"; }; - pythonPath = with pythonPackages; [ - icalendar + propagatedBuildInputs = with pythonPackages; [ click - requests lxml setuptools + setuptools_scm requests_toolbelt requests2 atomicwrites ]; - meta = { + meta = with stdenv.lib; { homepage = https://github.com/untitaker/vdirsyncer; description = "Synchronize calendars and contacts"; - maintainers = [ lib.maintainers.matthiasbeyer ]; - platforms = lib.platforms.all; - license = lib.licenses.mit; + maintainers = with maintainers; [ matthiasbeyer jgeerds ]; + platforms = platforms.all; + license = licenses.mit; }; } - diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix index 3985f8a0c838..eb3375730188 100644 --- a/pkgs/tools/misc/youtube-dl/default.nix +++ b/pkgs/tools/misc/youtube-dl/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchurl, makeWrapper, python, zip, ffmpeg, pandoc ? null }: +{ stdenv, fetchurl, makeWrapper, buildPythonPackage, zip, ffmpeg +, pandoc ? null }: # Pandoc is required to build the package's man page. Release tarballs # contain a formatted man page already, though, so it's fine to pass @@ -7,7 +8,7 @@ # case someone wants to use this derivation to build a Git version of # the tool that doesn't have the formatted man page included. -stdenv.mkDerivation rec { +buildPythonPackage rec { name = "youtube-dl-${version}"; version = "2015.05.29"; @@ -16,18 +17,11 @@ stdenv.mkDerivation rec { sha256 = "0lgxir2i5ipplg57wk8gnbbsdrk7szqnyb1bxr97f3h0rbm4dfij"; }; - buildInputs = [ python makeWrapper zip pandoc ]; - - patchPhase = "rm youtube-dl"; - - configurePhase = '' - makeFlagsArray=( PREFIX=$out SYSCONFDIR=$out/etc PYTHON=${python}/bin/python ) - ''; + buildInputs = [ makeWrapper zip pandoc ]; # Ensure ffmpeg is available in $PATH for post-processing & transcoding support. - postInstall = '' - wrapProgram $out/bin/youtube-dl --prefix PATH : "${ffmpeg}/bin" - ''; + postInstall = stdenv.lib.optionalString (ffmpeg != null) + ''wrapProgram $out/bin/youtube-dl --prefix PATH : "${ffmpeg}/bin"''; meta = with stdenv.lib; { homepage = "http://rg3.github.com/youtube-dl/"; diff --git a/pkgs/tools/networking/davix/default.nix b/pkgs/tools/networking/davix/default.nix new file mode 100644 index 000000000000..748e28407b26 --- /dev/null +++ b/pkgs/tools/networking/davix/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchFromGitHub, cmake, pkgconfig, openssl, libxml2, boost }: + +stdenv.mkDerivation rec { + name = "davix-0.4.0"; + buildInputs = [ stdenv pkgconfig cmake openssl libxml2 boost ]; + + src = fetchFromGitHub { + owner = "cern-it-sdc-id"; + repo = "davix"; + rev = "R_0_4_0-1"; + sha256 = "0i6ica7rmpc3hbybjql5mr500cd43w4qzc69cj1djkc6bqqb752v"; + }; + + + meta = with stdenv.lib; { + description = "Toolkit for Http-based file management"; + + longDescription = "Davix is a toolkit designed for file + operations with Http based protocols (WebDav, Amazon S3, ...). + Davix provides an API and a set of command line tools"; + + license = licenses.lgpl2Plus; + homepage = http://dmc.web.cern.ch/projects/davix/home; + maintainers = [ maintainers.adev ]; + platforms = platforms.all; + }; +} + diff --git a/pkgs/tools/networking/dnsmasq/default.nix b/pkgs/tools/networking/dnsmasq/default.nix index 4ae571f99e03..7752338c6bb2 100644 --- a/pkgs/tools/networking/dnsmasq/default.nix +++ b/pkgs/tools/networking/dnsmasq/default.nix @@ -1,20 +1,33 @@ -{ pkgconfig, dbus_libs, nettle, stdenv, fetchurl }: - +{ stdenv, fetchurl, pkgconfig, dbus_libs, nettle, libidn, libnetfilter_conntrack }: + +with stdenv.lib; +let + copts = concatStringsSep " " ([ + "-DHAVE_DBUS" + "-DHAVE_IDN" + "-DHAVE_DNSSEC" + ] ++ optionals stdenv.isLinux [ + "-DHAVE_CONNTRACK" + ]); +in stdenv.mkDerivation rec { - name = "dnsmasq-2.72"; + name = "dnsmasq-2.73"; src = fetchurl { url = "http://www.thekelleys.org.uk/dnsmasq/${name}.tar.xz"; - sha256 = "1c80hq09hfm8cp5pirfb8wdlc7dqkp7zzmbmdaradcvlblzx42vx"; + sha256 = "1xnqfaw2l78f4zw4z9sgr9nl9yc233gxc3sd7hxapz2k7q883zqb"; }; - # Can't rely on make flags because of space in one of the parameters - buildPhase = '' - make COPTS="-DHAVE_DNSSEC -DHAVE_DBUS" + preBuild = '' + makeFlagsArray=("COPTS=${copts}") ''; - # make flags used for installation only - makeFlags = "DESTDIR= BINDIR=$(out)/bin MANDIR=$(out)/man LOCALEDIR=$(out)/share/locale"; + makeFlags = [ + "DESTDIR=" + "BINDIR=$(out)/bin" + "MANDIR=$(out)/man" + "LOCALEDIR=$(out)/share/locale" + ]; postInstall = '' install -Dm644 dbus/dnsmasq.conf $out/etc/dbus-1/system.d/dnsmasq.conf @@ -24,15 +37,17 @@ stdenv.mkDerivation rec { cat <<END > $out/share/dbus-1/system-services/uk.org.thekelleys.dnsmasq.service [D-BUS Service] Name=uk.org.thekelleys.dnsmasq - Exec=$out/sbin/dnsmasq -k -1 + Exec=$out/bin/dnsmasq -k -1 User=root SystemdService=dnsmasq.service END ''; - buildInputs = [ pkgconfig dbus_libs nettle ]; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ dbus_libs nettle libidn ] + ++ optional stdenv.isLinux libnetfilter_conntrack; - meta = with stdenv.lib; { + meta = { description = "An integrated DNS, DHCP and TFTP server for small networks"; homepage = http://www.thekelleys.org.uk/dnsmasq/doc.html; license = licenses.gpl2; diff --git a/pkgs/tools/networking/getmail/default.nix b/pkgs/tools/networking/getmail/default.nix index dbd3c631c29f..a05b3ccfa9aa 100644 --- a/pkgs/tools/networking/getmail/default.nix +++ b/pkgs/tools/networking/getmail/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchurl, buildPythonPackage }: buildPythonPackage rec { - version = "4.47.0"; + version = "4.48.0"; name = "getmail-${version}"; namePrefix = ""; src = fetchurl { url = "http://pyropus.ca/software/getmail/old-versions/${name}.tar.gz"; - sha256 = "0h25irimigral9xspkvjmplzddqphyn51n5fq221m7nps39wqnjb"; + sha256 = "0k5rm5kag14izng2ajcagvli9sns5mzvkyfa65ri4xymxs91wi29"; }; doCheck = false; diff --git a/pkgs/tools/networking/httping/default.nix b/pkgs/tools/networking/httping/default.nix index 9243550a1b1b..9389d17900b1 100644 --- a/pkgs/tools/networking/httping/default.nix +++ b/pkgs/tools/networking/httping/default.nix @@ -10,7 +10,8 @@ stdenv.mkDerivation rec { sha256 = "1110r3gpsj9xmybdw7w4zkhj3zmn5mnv2nq0ijbvrywbn019zdfs"; }; - buildInputs = [ gettext ncurses ]; + buildInputs = [ ncurses ]; + nativeBuildInputs = [ gettext ]; makeFlags = [ "DESTDIR=$(out)" diff --git a/pkgs/tools/networking/inetutils/default.nix b/pkgs/tools/networking/inetutils/default.nix index 251462ecc27b..eca416b53d4e 100644 --- a/pkgs/tools/networking/inetutils/default.nix +++ b/pkgs/tools/networking/inetutils/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, ncurses }: stdenv.mkDerivation rec { - name = "inetutils-1.9.3"; + name = "inetutils-1.9.4"; src = fetchurl { url = "mirror://gnu/inetutils/${name}.tar.gz"; - sha256 = "06dshajjpyi9sxi7qfki9gnp5r3nxvyvf81r81gx0x2qkqzqcxlj"; + sha256 = "05n65k4ixl85dc6rxc51b1b732gnmm8xnqi424dy9f1nz7ppb3xy"; }; buildInputs = [ ncurses /* for `talk' */ ]; diff --git a/pkgs/tools/networking/ipv6calc/default.nix b/pkgs/tools/networking/ipv6calc/default.nix index f1abec0faf71..102d06882349 100644 --- a/pkgs/tools/networking/ipv6calc/default.nix +++ b/pkgs/tools/networking/ipv6calc/default.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation rec { sha256 = "02r0r4lgz10ivbmgdzivj7dvry1aad75ik9vyy6irjvngjkzg5r3"; }; - buildInputs = [ geoip geolite-legacy getopt openssl perl ]; + buildInputs = [ geoip geolite-legacy getopt openssl ]; + nativeBuildInputs = [ perl ]; patchPhase = '' for i in {,databases/}lib/Makefile.in; do diff --git a/pkgs/tools/networking/lftp/default.nix b/pkgs/tools/networking/lftp/default.nix index 1e1f1bd8b765..c77e20c24131 100644 --- a/pkgs/tools/networking/lftp/default.nix +++ b/pkgs/tools/networking/lftp/default.nix @@ -1,18 +1,16 @@ { stdenv, fetchurl, gnutls, pkgconfig, readline, zlib }: stdenv.mkDerivation rec { - name = "lftp-4.6.1"; + name = "lftp-4.6.3a"; src = fetchurl { urls = [ "http://lftp.yar.ru/ftp/${name}.tar.bz2" "http://lftp.yar.ru/ftp/old/${name}.tar.bz2" ]; - sha256 = "0w9nb24abqlnjzi30q8s0yv3h0zjxhynliyxwdgnrv0qag0k401s"; + sha256 = "0846p1z5v997lxaqanj8n1qkv470s8nlhs420kiby67k4j2zl576"; }; - patches = [ ./no-gets.patch ]; - buildInputs = [ gnutls pkgconfig readline zlib ]; meta = with stdenv.lib; { diff --git a/pkgs/tools/networking/lftp/no-gets.patch b/pkgs/tools/networking/lftp/no-gets.patch deleted file mode 100644 index 0c2cb7c8ae6c..000000000000 --- a/pkgs/tools/networking/lftp/no-gets.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- a/lib/stdio.in.h -+++ b/lib/stdio.in.h -@@ -702,10 +702,12 @@ - /* It is very rare that the developer ever has full control of stdin, - so any use of gets warrants an unconditional warning; besides, C11 - removed it. */ -+#ifdef gets - #undef gets - #if HAVE_RAW_DECL_GETS - _GL_WARN_ON_USE (gets, "gets is a security hole - use fgets instead"); - #endif -+#endif - - - #if @GNULIB_OBSTACK_PRINTF@ || @GNULIB_OBSTACK_PRINTF_POSIX@ diff --git a/pkgs/tools/networking/openconnect.nix b/pkgs/tools/networking/openconnect.nix index d53af5c9e40d..54239b766174 100644 --- a/pkgs/tools/networking/openconnect.nix +++ b/pkgs/tools/networking/openconnect.nix @@ -1,13 +1,19 @@ -{ stdenv, fetchurl, pkgconfig, vpnc, openssl, libxml2, zlib } : +{ stdenv, fetchurl, pkgconfig, vpnc, openssl ? null, gnutls ? null, libxml2, zlib } : + +let + xor = a: b: (a || b) && (!(a && b)); +in + +assert xor (openssl != null) (gnutls != null); stdenv.mkDerivation rec { - name = "openconnect-5.02"; + name = "openconnect-7.06"; src = fetchurl { urls = [ "ftp://ftp.infradead.org/pub/openconnect/${name}.tar.gz" ]; - sha256 = "1y7dn42gd3763sgwv2j72xy9hsikd6y9x142g84kwdbn0y0psgi4"; + sha256 = "1wkhmgfxkdkhy2p9w9idrgipxmxij2z4f88flfk3fifwd19nkkzs"; }; preConfigure = '' @@ -22,5 +28,6 @@ stdenv.mkDerivation rec { "--without-openssl-version-check" ]; - propagatedBuildInputs = [ vpnc openssl libxml2 zlib ]; + buildInputs = [ pkgconfig ]; + propagatedBuildInputs = [ vpnc openssl gnutls libxml2 zlib ]; } diff --git a/pkgs/tools/networking/strongswan/default.nix b/pkgs/tools/networking/strongswan/default.nix index 871cd3e8f473..d65f1ac43351 100644 --- a/pkgs/tools/networking/strongswan/default.nix +++ b/pkgs/tools/networking/strongswan/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, gmp, pkgconfig, python, autoreconfHook }: stdenv.mkDerivation rec { - name = "strongswan-5.2.1"; + name = "strongswan-5.3.2"; src = fetchurl { url = "http://download.strongswan.org/${name}.tar.bz2"; - sha256 = "05cjjd7gg65bl6fswj2r2i13nn1nk4x86s06y75gwfdvnlrsnlga"; + sha256 = "09gjrd5f8iykh926y35blxlm2hlzpw15m847d8vc9ga29s6brad4"; }; dontPatchELF = true; diff --git a/pkgs/tools/networking/wolfebin/default.nix b/pkgs/tools/networking/wolfebin/default.nix new file mode 100644 index 000000000000..05bf8d5dd11c --- /dev/null +++ b/pkgs/tools/networking/wolfebin/default.nix @@ -0,0 +1,29 @@ +{ stdenv, fetchFromGitHub, python }: + +stdenv.mkDerivation rec { + version = "5.4"; + name = "wolfebin-${version}"; + + src = fetchFromGitHub { + owner = "thejoshwolfe"; + repo = "wolfebin"; + rev = "${version}"; + sha256 = "16xj6zz30sn9q05p211bmmsl0i6fknfxf8dssn6knm6nkiym8088"; + }; + + buildInputs = [ python ]; + + installPhase = '' + install -m 755 -d $out/bin + install -m 755 wolfebin $out/bin + install -m 755 wolfebin_server.py $out/bin/wolfebin_server + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/thejoshwolfe/wolfebin; + description = "Quick and easy file sharing"; + license = licenses.mit; + maintainers = [ maintainers.andrewrk ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/tools/package-management/disnix/dysnomia/default.nix b/pkgs/tools/package-management/disnix/dysnomia/default.nix index 021225c1b4d4..0507ff45dc72 100644 --- a/pkgs/tools/package-management/disnix/dysnomia/default.nix +++ b/pkgs/tools/package-management/disnix/dysnomia/default.nix @@ -42,7 +42,7 @@ stdenv.mkDerivation { buildInputs = [ getopt ] ++ stdenv.lib.optional enableEjabberdDump ejabberd - ++ stdenv.lib.optional enableMySQLDatabase mysql.lib + ++ stdenv.lib.optional enableMySQLDatabase mysql.out ++ stdenv.lib.optional enablePostgreSQLDatabase postgresql ++ stdenv.lib.optional enableSubversionRepository subversion ++ stdenv.lib.optional enableMongoDatabase mongodb; diff --git a/pkgs/tools/package-management/dpkg/default.nix b/pkgs/tools/package-management/dpkg/default.nix index e5be41ed7f6f..022b8dfc2ca4 100644 --- a/pkgs/tools/package-management/dpkg/default.nix +++ b/pkgs/tools/package-management/dpkg/default.nix @@ -33,7 +33,8 @@ stdenv.mkDerivation { done ''; - buildInputs = [ perl zlib bzip2 xz makeWrapper ]; + buildInputs = [ perl zlib bzip2 xz ]; + nativeBuildInputs = [ makeWrapper ]; postInstall = '' diff --git a/pkgs/tools/package-management/nix-repl/default.nix b/pkgs/tools/package-management/nix-repl/default.nix index 35f4f36b4734..feba569d3987 100644 --- a/pkgs/tools/package-management/nix-repl/default.nix +++ b/pkgs/tools/package-management/nix-repl/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, nix, readline, boehmgc }: -let rev = "f92408136ed08804bab14b3e2a2def9b8effd7eb"; in +let rev = "45c6405a30bd1b2cb8ad6a94b23be8b10cf52069"; in stdenv.mkDerivation { name = "nix-repl-${lib.getVersion nix}-${lib.substring 0 7 rev}"; @@ -9,7 +9,7 @@ stdenv.mkDerivation { owner = "edolstra"; repo = "nix-repl"; inherit rev; - sha256 = "1vl36d3n7hrw4vy2n358zx210ygkj4lmd8zsiifna6x7w7q388bj"; + sha256 = "0c6sifpz8j898xznvy9dvm44w4nysqprrhs553in19jwwkf7kryp"; }; buildInputs = [ nix readline ]; diff --git a/pkgs/tools/package-management/nix-serve/default.nix b/pkgs/tools/package-management/nix-serve/default.nix index 9b42a722e96d..332576a9873c 100644 --- a/pkgs/tools/package-management/nix-serve/default.nix +++ b/pkgs/tools/package-management/nix-serve/default.nix @@ -1,18 +1,19 @@ { lib, stdenv, fetchFromGitHub, perl, nix, perlPackages }: -let rev = "4c24e3ffa7d267d67d87135e7ac4c9198e449cd3"; in +let rev = "7e09caa2a7a435aeb2cd5446aa590d6f9ae1699d"; in stdenv.mkDerivation rec { - name = "nix-serve-0.1-${lib.substring 0 7 rev}"; + name = "nix-serve-0.2-${lib.substring 0 7 rev}"; src = fetchFromGitHub { owner = "edolstra"; repo = "nix-serve"; inherit rev; - sha256 = "1c0ip4w00j86412l2qf0dwzjr9jzimiygbx82x15r46kr3cpk7kp"; + sha256 = "0mjzsiknln3isdri9004wwjjjpak5fj8ncizyncf5jv7g4m4q1pj"; }; - buildInputs = [ perl nix perlPackages.Plack perlPackages.Starman ]; + buildInputs = [ perl nix ] + ++ (with perlPackages; [ DBI DBDSQLite Plack Starman ]); buildPhase = "true"; diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index 2d1051131336..d64e194e93e2 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -1,22 +1,20 @@ -{ stdenv, fetchurl, perl, curl, bzip2, sqlite, openssl ? null -, pkgconfig, boehmgc, perlPackages +{ lib, stdenv, fetchurl, perl, curl, bzip2, sqlite, openssl ? null +, pkgconfig, boehmgc, perlPackages, libsodium , storeDir ? "/nix/store" , stateDir ? "/nix/var" }: stdenv.mkDerivation rec { - name = "nix-1.8"; + name = "nix-1.9"; src = fetchurl { url = "http://nixos.org/releases/nix/${name}/${name}.tar.xz"; - sha256 = "a30a5e801bc1cb1019cbc3456d961a307c45c9c588b8692cf1293ea6588ef01c"; + sha256 = "8a47cd7c35dfa628a4acfaef387e7451013c61d250bbcf1f38067a7c73f9f3e1"; }; - patches = [ ./xfs.patch ]; - nativeBuildInputs = [ perl pkgconfig ]; - buildInputs = [ curl openssl sqlite ]; + buildInputs = [ curl openssl sqlite ] ++ lib.optional stdenv.isLinux libsodium; propagatedBuildInputs = [ boehmgc ]; diff --git a/pkgs/tools/package-management/nix/xfs.patch b/pkgs/tools/package-management/nix/xfs.patch deleted file mode 100644 index 62ee9189ac1a..000000000000 --- a/pkgs/tools/package-management/nix/xfs.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/src/libexpr/primops.cc b/src/libexpr/primops.cc -index 119e71a..422ec97 100644 ---- a/src/libexpr/primops.cc -+++ b/src/libexpr/primops.cc -@@ -796,7 +796,7 @@ static void prim_readDir(EvalState & state, const Pos & pos, Value * * args, Val - for (auto & ent : entries) { - Value * ent_val = state.allocAttr(v, state.symbols.create(ent.name)); - if (ent.type == DT_UNKNOWN) -- ent.type = getFileType(path); -+ ent.type = getFileType(path + "/" + ent.name); - mkStringNoCopy(*ent_val, - ent.type == DT_REG ? "regular" : - ent.type == DT_DIR ? "directory" : diff --git a/pkgs/tools/security/afl/default.nix b/pkgs/tools/security/afl/default.nix index 2aed8df32605..ff9798b3f751 100644 --- a/pkgs/tools/security/afl/default.nix +++ b/pkgs/tools/security/afl/default.nix @@ -9,11 +9,11 @@ let in stdenv.mkDerivation rec { name = "afl-${version}"; - version = "1.80b"; + version = "1.83b"; src = fetchurl { url = "http://lcamtuf.coredump.cx/afl/releases/${name}.tgz"; - sha256 = "008l2qirwlf40yhlrybcpglsil9nw8498qcjmvrnvvq31piwyhp0"; + sha256 = "1zkf9vdhmm1h0flxl1ybmw41amgh9cyh4hyb18jp972lgd9q642v"; }; # Note: libcgroup isn't needed for building, just for the afl-cgroup diff --git a/pkgs/tools/security/clamav/default.nix b/pkgs/tools/security/clamav/default.nix index 9a0b947e99b7..1f36d54ff50a 100644 --- a/pkgs/tools/security/clamav/default.nix +++ b/pkgs/tools/security/clamav/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchurl, zlib, bzip2, libiconv, libxml2, openssl, ncurses, curl }: +{ stdenv, fetchurl, zlib, bzip2, libiconv, libxml2, openssl, ncurses, curl +, libmilter }: stdenv.mkDerivation rec { name = "clamav-${version}"; version = "0.98.7"; @@ -8,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "0wp2ad8km4cqmlndni5ljv7q3lfxm6y4r3giv0yf23bl0yvif918"; }; - buildInputs = [ zlib bzip2 libxml2 openssl ncurses curl libiconv ]; + buildInputs = [ zlib bzip2 libxml2 openssl ncurses curl libiconv libmilter ]; configureFlags = [ "--with-zlib=${zlib}" @@ -18,6 +19,7 @@ stdenv.mkDerivation rec { "--with-openssl=${openssl}" "--with-libncurses-prefix=${ncurses}" "--with-libcurl=${curl}" + "--enable-milter" "--disable-clamav" ]; diff --git a/pkgs/tools/security/eid-mw/default.nix b/pkgs/tools/security/eid-mw/default.nix index 1833d460081f..e02c58d3825b 100644 --- a/pkgs/tools/security/eid-mw/default.nix +++ b/pkgs/tools/security/eid-mw/default.nix @@ -12,7 +12,8 @@ stdenv.mkDerivation rec { owner = "Fedict"; }; - buildInputs = [ autoreconfHook gtk2 pcsclite pkgconfig ]; + buildInputs = [ gtk2 pcsclite ]; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; enableParallelBuilding = true; diff --git a/pkgs/tools/security/eid-viewer/default.nix b/pkgs/tools/security/eid-viewer/default.nix index 06307263e52e..f2dfd58a7fb1 100644 --- a/pkgs/tools/security/eid-viewer/default.nix +++ b/pkgs/tools/security/eid-viewer/default.nix @@ -11,7 +11,8 @@ stdenv.mkDerivation rec { sha256 = "e263e6751ef7c185e278a607fdc46c207306d9a56c6ddb2ce6f58fb4464a2893"; }; - buildInputs = [ jre makeWrapper pcsclite ]; + buildInputs = [ jre pcsclite ]; + nativeBuildInputs = [ makeWrapper ]; unpackPhase = "tar -xzf ${src} --strip-components=1"; diff --git a/pkgs/tools/security/gnupg/21.nix b/pkgs/tools/security/gnupg/21.nix index 31a6bd2c4602..34561c3c33dd 100644 --- a/pkgs/tools/security/gnupg/21.nix +++ b/pkgs/tools/security/gnupg/21.nix @@ -13,15 +13,13 @@ with stdenv.lib; assert x11Support -> pinentry != null; stdenv.mkDerivation rec { - name = "gnupg-2.1.4"; + name = "gnupg-2.1.5"; src = fetchurl { url = "mirror://gnupg/gnupg/${name}.tar.bz2"; - sha256 = "1c3c89b7ziknz6h1dnwmfjhgyy28g982rcncrhmhylb8v3npw4k4"; + sha256 = "0k5818r847zplbrwjp6i48s6xb5zy44rny2kmbisd6y3c1qml45m"; }; - patches = [ ./socket-activate-2.1.1.patch ]; - postPatch = stdenv.lib.optionalString stdenv.isLinux '' sed -i 's,"libpcsclite\.so[^"]*","${pcsclite}/lib/libpcsclite.so",g' scd/scdaemon.c ''; diff --git a/pkgs/tools/security/gnupg/socket-activate-2.1.1.patch b/pkgs/tools/security/gnupg/socket-activate-2.1.1.patch deleted file mode 100644 index 2c2d7b542501..000000000000 --- a/pkgs/tools/security/gnupg/socket-activate-2.1.1.patch +++ /dev/null @@ -1,170 +0,0 @@ -Port Shea Levy's socket activation patch to version 2.1.1. - -diff -Naur gnupg-2.1.1-upstream/agent/gpg-agent.c gnupg-2.1.1/agent/gpg-agent.c ---- gnupg-2.1.1-upstream/agent/gpg-agent.c 2014-12-01 05:04:57.000000000 -0430 -+++ gnupg-2.1.1/agent/gpg-agent.c 2014-12-23 17:13:48.029286035 -0430 -@@ -125,7 +125,9 @@ - oPuttySupport, - oDisableScdaemon, - oDisableCheckOwnSocket, -- oWriteEnvFile -+ oWriteEnvFile, -+ oAgentFD, -+ oSSHAgentFD - }; - - -@@ -143,6 +145,8 @@ - ARGPARSE_group (301, N_("@Options:\n ")), - - ARGPARSE_s_n (oDaemon, "daemon", N_("run in daemon mode (background)")), -+ ARGPARSE_s_i (oAgentFD, "agent-fd", "@"), -+ ARGPARSE_s_i (oSSHAgentFD, "ssh-agent-fd", "@"), - ARGPARSE_s_n (oServer, "server", N_("run in server mode (foreground)")), - ARGPARSE_s_n (oVerbose, "verbose", N_("verbose")), - ARGPARSE_s_n (oQuiet, "quiet", N_("be somewhat more quiet")), -@@ -627,6 +631,31 @@ - return 1; /* handled */ - } - -+/* Handle agent socket(s) */ -+static void -+handle_agent_socks(int fd, int fd_extra, int fd_ssh) -+{ -+#ifndef HAVE_W32_SYSTEM -+ if (chdir("/")) -+ { -+ log_error ("chdir to / failed: %s\n", strerror (errno)); -+ exit (1); -+ } -+ -+ { -+ struct sigaction sa; -+ -+ sa.sa_handler = SIG_IGN; -+ sigemptyset (&sa.sa_mask); -+ sa.sa_flags = 0; -+ sigaction (SIGPIPE, &sa, NULL); -+ } -+#endif /*!HAVE_W32_SYSTEM*/ -+ -+ log_info ("%s %s started\n", strusage(11), strusage(13) ); -+ handle_connections (fd, fd_extra, fd_ssh); -+ assuan_sock_close (fd); -+} - - /* The main entry point. */ - int -@@ -643,6 +672,8 @@ - int default_config =1; - int pipe_server = 0; - int is_daemon = 0; -+ int fd_agent = GNUPG_INVALID_FD; -+ int fd_ssh_agent = GNUPG_INVALID_FD; - int nodetach = 0; - int csh_style = 0; - char *logfile = NULL; -@@ -850,6 +881,8 @@ - case oSh: csh_style = 0; break; - case oServer: pipe_server = 1; break; - case oDaemon: is_daemon = 1; break; -+ case oAgentFD: fd_agent = pargs.r.ret_int; break; -+ case oSSHAgentFD: fd_ssh_agent = pargs.r.ret_int; break; - - case oDisplay: default_display = xstrdup (pargs.r.ret_str); break; - case oTTYname: default_ttyname = xstrdup (pargs.r.ret_str); break; -@@ -940,7 +973,8 @@ - bind_textdomain_codeset (PACKAGE_GT, "UTF-8"); - #endif - -- if (!pipe_server && !is_daemon && !gpgconf_list) -+ if (!pipe_server && !is_daemon && !gpgconf_list && -+ fd_agent == GNUPG_INVALID_FD) - { - /* We have been called without any options and thus we merely - check whether an agent is already running. We do this right -@@ -1090,6 +1124,10 @@ - agent_deinit_default_ctrl (ctrl); - xfree (ctrl); - } -+ else if (fd_agent != GNUPG_INVALID_FD) -+ { -+ handle_agent_socks(fd_agent, GNUPG_INVALID_FD, fd_ssh_agent); -+ } - else if (!is_daemon) - ; /* NOTREACHED */ - else -@@ -1287,26 +1325,8 @@ - log_set_prefix (NULL, oldflags | JNLIB_LOG_RUN_DETACHED); - opt.running_detached = 1; - } -- -- if (chdir("/")) -- { -- log_error ("chdir to / failed: %s\n", strerror (errno)); -- exit (1); -- } -- -- { -- struct sigaction sa; -- -- sa.sa_handler = SIG_IGN; -- sigemptyset (&sa.sa_mask); -- sa.sa_flags = 0; -- sigaction (SIGPIPE, &sa, NULL); -- } --#endif /*!HAVE_W32_SYSTEM*/ -- -- log_info ("%s %s started\n", strusage(11), strusage(13) ); -- handle_connections (fd, fd_extra, fd_ssh); -- assuan_sock_close (fd); -+#endif /*!HAVE_W32_SYSTEM*/ -+ handle_agent_socks(fd, fd_extra, fd_ssh); - } - - return 0; -diff -Naur gnupg-2.1.1-upstream/doc/gpg-agent.texi gnupg-2.1.1/doc/gpg-agent.texi ---- gnupg-2.1.1-upstream/doc/gpg-agent.texi 2014-12-05 09:56:37.000000000 -0430 -+++ gnupg-2.1.1/doc/gpg-agent.texi 2014-12-23 16:26:38.366391186 -0430 -@@ -43,7 +43,15 @@ - .IR file ] - .RI [ options ] - .B \-\-daemon --.RI [ command_line ] -+.br -+.B gpg-agent -+.RB [ \-\-homedir -+.IR dir ] -+.RB [ \-\-options -+.IR file ] -+.RI [ options ] -+.B \-\-agent-fd -+.IR fd - @end ifset - - @mansect description -@@ -186,6 +194,11 @@ - a new process as a child of gpg-agent: @code{gpg-agent --daemon - /bin/sh}. This way you get a new shell with the environment setup - properly; if you exit from this shell, gpg-agent terminates as well. -+ -+@item --agent-fd @var{fd} -+@opindex agent-fd -+Start the gpg-agent using @var{fd} as the listening socket. This is useful for -+socket activation a la systemd and launchd. - @end table - - @mansect options -@@ -545,6 +558,12 @@ - remote machine. - - -+@item --ssh-agent-fd @var{fd} -+@opindex ssh-agent-fd -+ -+When starting the agent with @option{--agent-fd}, use this to pass in a socket -+to be used for the OpenSSH agent protocol. -+ - @anchor{option --enable-ssh-support} - @item --enable-ssh-support - @opindex enable-ssh-support diff --git a/pkgs/tools/security/muscleframework/default.nix b/pkgs/tools/security/muscleframework/default.nix index 97b0617d3969..c1b9dad91ff4 100644 --- a/pkgs/tools/security/muscleframework/default.nix +++ b/pkgs/tools/security/muscleframework/default.nix @@ -20,11 +20,11 @@ stdenv.mkDerivation { buildInputs = [ libmusclecard pkgconfig pcsclite]; - meta = { + meta = with stdenv.lib; { description = "MUSCLE smart card framework - mcard plugin"; homepage = http://muscleplugins.alioth.debian.org/; - license = "BSD"; - maintainers = with stdenv.lib.maintainers; [viric]; + license = licenses.bsd3; + maintainers = with maintainers; [viric]; # XXX: don't build before libmusclecard is fixed # platforms = with stdenv.lib.platforms; linux; }; diff --git a/pkgs/tools/security/muscletool/default.nix b/pkgs/tools/security/muscletool/default.nix index cc369835f25c..34f75609e4ff 100644 --- a/pkgs/tools/security/muscletool/default.nix +++ b/pkgs/tools/security/muscletool/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation { buildInputs = [ libmusclecard pcsclite pkgconfig ]; - meta = { + meta = with stdenv.lib; { description = "Smart card applications for use with MUSCLE plugins"; homepage = http://muscleapps.alioth.debian.org/; - license = "BSD"; # http://anonscm.debian.org/viewvc/muscleapps/trunk/muscleTool/COPYING?view=markup - maintainers = with stdenv.lib.maintainers; [viric]; + license = licenses.bsd3; + maintainers = with maintainers; [viric]; # XXX: don't build before libmusclecard is fixed # platforms = with stdenv.lib.platforms; linux; }; diff --git a/pkgs/tools/security/opensc/default.nix b/pkgs/tools/security/opensc/default.nix index 8d9366bdc0fc..672b95dec450 100644 --- a/pkgs/tools/security/opensc/default.nix +++ b/pkgs/tools/security/opensc/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { name = "opensc-${version}"; - version = "0.14.0"; + version = "0.15.0"; src = fetchFromGitHub { owner = "OpenSC"; repo = "OpenSC"; rev = version; - sha256 = "02q3rndcfd7lga1ph0xcl556rgigzpp9bpwqyn42rfbx8lll7gzv"; + sha256 = "16y3ryx606nry2li05hm88bllrragdj3sfl3yh7pf71777n4lsk4"; }; postPatch = '' @@ -37,6 +37,10 @@ stdenv.mkDerivation rec { "--with-pcsc-provider=${pcsclite}/lib/libpcsclite.so" ]; + installFlags = [ + "sysconfdir=\${out}/etc" + ]; + meta = with stdenv.lib; { description = "Set of libraries and utilities to access smart cards"; homepage = https://github.com/OpenSC/OpenSC/wiki; diff --git a/pkgs/tools/security/pinentry/default.nix b/pkgs/tools/security/pinentry/default.nix index 757959f53451..6c87d8062eca 100644 --- a/pkgs/tools/security/pinentry/default.nix +++ b/pkgs/tools/security/pinentry/default.nix @@ -10,15 +10,21 @@ let in with stdenv.lib; stdenv.mkDerivation rec { - name = "pinentry-0.9.1"; + name = "pinentry-0.9.4"; src = fetchurl { url = "mirror://gnupg/pinentry/${name}.tar.bz2"; - sha256 = "15cn7q6wg3k433l9ks48pz4dbikp7ysp0h8jqynz6p9rdf2qxl4w"; + sha256 = "1q72ir9r9j70px61rdpd80an56k4ixmzy810nr14aildffxkb22b"; }; buildInputs = [ libcap gtk2 ncurses qt4 ]; + # configure cannot find moc on its own + preConfigure = stdenv.lib.optionalString (qt4 != null) '' + export QTDIR="${qt4}" + export MOC="${qt4}/bin/moc" + ''; + configureFlags = [ (mkWith (libcap != null) "libcap") (mkWith (hasX) "x") @@ -36,8 +42,9 @@ stdenv.mkDerivation rec { license = stdenv.lib.licenses.gpl2Plus; platforms = stdenv.lib.platforms.all; longDescription = '' - Pinentry provides a console and a GTK+ GUI that allows users to - enter a passphrase when `gpg' or `gpg2' is run and needs it. + Pinentry provides a console and (optional) GTK+ and Qt GUIs allowing users + to enter a passphrase when `gpg' or `gpg2' is run and needs it. ''; + maintainers = [ stdenv.lib.maintainers.ttuegel ]; }; } diff --git a/pkgs/tools/security/rhash/default.nix b/pkgs/tools/security/rhash/default.nix index 6a2710869bf8..40f5163d89d2 100644 --- a/pkgs/tools/security/rhash/default.nix +++ b/pkgs/tools/security/rhash/default.nix @@ -1,7 +1,8 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "rhash-1.3.3"; + version = "1.3.3"; + name = "rhash-${version}"; src = fetchurl { url = "mirror://sourceforge/rhash/${name}-src.tar.gz"; @@ -10,9 +11,24 @@ stdenv.mkDerivation rec { installFlags = [ "DESTDIR=$(out)" "PREFIX=/" ]; + # we build the static library because of two makefile bugs + # * .h files installed for static library target only + # * .so.0 -> .so link only created in the static library install target + buildPhase = '' + make lib-shared lib-static build-shared + ''; + + # we don't actually want the static library, so we remove it after it + # gets installed + installPhase = '' + make DESTDIR="$out" PREFIX="/" install-shared install-lib-shared install-lib-static + rm $out/lib/librhash.a + ''; + meta = with stdenv.lib; { homepage = http://rhash.anz.ru; - description = "Console utility for computing and verifying hash sums of files"; + description = "Console utility and library for computing and verifying hash sums of files"; platforms = platforms.linux; + maintainers = [ maintainers.andrewrk ]; }; } diff --git a/pkgs/tools/security/tor/default.nix b/pkgs/tools/security/tor/default.nix index c6a5917640e8..bfa1a0ab9f4d 100644 --- a/pkgs/tools/security/tor/default.nix +++ b/pkgs/tools/security/tor/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, libevent, openssl, zlib, torsocks }: stdenv.mkDerivation rec { - name = "tor-0.2.6.8"; + name = "tor-0.2.6.9"; src = fetchurl { url = "https://archive.torproject.org/tor-package-archive/${name}.tar.gz"; - sha256 = "0xlsc2pa7i8hm8dyilln6p4rb0pig62b9c31yp1m0hj5jqw3d2xq"; + sha256 = "171gjhapymfzql3bbx5qndgkamcfdl6lincrqlr7i3d9i6njjv2a"; }; # Note: torsocks is specified as a dependency, as the distributed diff --git a/pkgs/tools/security/tor/torbrowser.nix b/pkgs/tools/security/tor/torbrowser.nix index 4ab0cabbcd31..34803f03cd1e 100644 --- a/pkgs/tools/security/tor/torbrowser.nix +++ b/pkgs/tools/security/tor/torbrowser.nix @@ -20,13 +20,13 @@ let in stdenv.mkDerivation rec { name = "tor-browser-${version}"; - version = "4.5.1"; + version = "4.5.2"; src = fetchurl { url = "https://archive.torproject.org/tor-package-archive/torbrowser/${version}/tor-browser-linux${bits}-${version}_en-US.tar.xz"; sha256 = if bits == "64" then - "0nbjw04xbzb5d4q0j05nq9p8vdpzqxzhbywjxdgpc5mc73jyv8mr" else - "0fkzgdyxi7gl3kyfp0jmbky61a1b2yg9747h75bgkkndnqxnmkqw"; + "139c85096ee85a65222753fbbee7c04e8cc494021f9afaf5c1a0f520dd7869b9" else + "960277aea38a3958f3ac573535302e61b3b0137169e5d7b9687cee648a5d5bec"; }; patchPhase = '' diff --git a/pkgs/tools/security/trousers/default.nix b/pkgs/tools/security/trousers/default.nix index 9d15b16a1885..e910241113b9 100644 --- a/pkgs/tools/security/trousers/default.nix +++ b/pkgs/tools/security/trousers/default.nix @@ -15,7 +15,8 @@ stdenv.mkDerivation rec { configureFlags = [ "--disable-usercheck" ]; - NIX_CFLAGS_COMPILE = "-DALLOW_NON_TSS_CONFIG_FILE"; + # Attempt to remove -std=gnu89 when updating if using gcc5 + NIX_CFLAGS_COMPILE = "-std=gnu89 -DALLOW_NON_TSS_CONFIG_FILE"; NIX_LDFLAGS = "-lgcc_s"; # Fix broken libtool file diff --git a/pkgs/tools/system/ansible/default.nix b/pkgs/tools/system/ansible/default.nix index 374528872e8e..c23d10d20ee5 100644 --- a/pkgs/tools/system/ansible/default.nix +++ b/pkgs/tools/system/ansible/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pythonPackages, python }: +{ windowsSupport ? true, stdenv, fetchurl, pythonPackages, python }: pythonPackages.buildPythonPackage rec { version = "1.9.1"; @@ -21,7 +21,7 @@ pythonPackages.buildPythonPackage rec { propagatedBuildInputs = with pythonPackages; [ paramiko jinja2 pyyaml httplib2 boto six - ]; + ] ++ stdenv.lib.optional windowsSupport pywinrm; postFixup = '' wrapPythonProgramsIn $out/bin "$out $pythonPath" diff --git a/pkgs/tools/system/dd_rescue/default.nix b/pkgs/tools/system/dd_rescue/default.nix index 7b3e62a1bc03..a0ff9b063dd8 100644 --- a/pkgs/tools/system/dd_rescue/default.nix +++ b/pkgs/tools/system/dd_rescue/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, autoconf }: stdenv.mkDerivation rec { - version = "1.46"; + version = "1.98"; name = "dd_rescue-${version}"; src = fetchurl { - sha256 = "1fhs4jl5pkyn4aq75fxczrgnsj2m0kz9hfa7dhxy93vp7xcba2cy"; - url="http://www.garloff.de/kurt/linux/ddrescue/${name}.tar.gz"; + sha256 = "14lf2pv52sr16977qjq1rsr42rfd3ywsss2xw9svgaa14g49ss6b"; + url="http://www.garloff.de/kurt/linux/ddrescue/${name}.tar.bz2"; }; dd_rhelp_src = fetchurl { diff --git a/pkgs/tools/system/dfc/default.nix b/pkgs/tools/system/dfc/default.nix index 84150b468378..63a6e7e1fa30 100644 --- a/pkgs/tools/system/dfc/default.nix +++ b/pkgs/tools/system/dfc/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchurl, cmake, gettext}: stdenv.mkDerivation rec { - name = "dfc-3.0.4"; + name = "dfc-3.0.5"; src = fetchurl { - url = "http://projects.gw-computing.net/attachments/download/79/dfc-3.0.4.tar.gz"; - sha256 = "0bdc2edb92c7f740a0b7d3fa75eb134adf197ba711bfa589ab51c691fabd617e"; + url = "http://projects.gw-computing.net/attachments/download/467/${name}.tar.gz"; + sha256 = "0yl5dl1nydinji71zz37c7myg3vg9jzxq89rcjqlfcy5dcfpm51w"; }; buildInputs = [ cmake gettext ]; diff --git a/pkgs/tools/system/efibootmgr/default.nix b/pkgs/tools/system/efibootmgr/default.nix index 3f26760e621b..6364267fc479 100644 --- a/pkgs/tools/system/efibootmgr/default.nix +++ b/pkgs/tools/system/efibootmgr/default.nix @@ -1,17 +1,21 @@ -{ stdenv, fetchgit, perl, efivar, pciutils, zlib }: +{ stdenv, fetchFromGitHub, perl, efivar, pciutils, zlib }: stdenv.mkDerivation rec { name = "efibootmgr-${version}"; - version = "0.11.0"; + version = "0.12"; buildInputs = [ perl efivar pciutils zlib ]; - src = fetchgit { - url = "git://github.com/rhinstaller/efibootmgr.git"; - rev = "refs/tags/${name}"; - sha256 = "1di7cipi6jh4qaiq1ckyk6aimgpagb85yr37k3c1kj1m9p5qra4j"; + src = fetchFromGitHub { + owner = "rhinstaller"; + repo = "efibootmgr"; + rev = name; + sha256 = "0fmrsp67dln76896fvxalj2pamyp9dszf32kl06wdfi0km42z8sh"; }; + NIX_CFLAGS_COMPILE = "-I${efivar}/include/efivar"; + NIX_LDFLAGS = "-lefiboot -lefivar"; + postPatch = '' substituteInPlace "./tools/install.pl" \ --replace "/usr/bin/perl" "${perl}/bin/perl" diff --git a/pkgs/tools/system/efivar/default.nix b/pkgs/tools/system/efivar/default.nix index fadf99f9b977..d0c84d52daac 100644 --- a/pkgs/tools/system/efivar/default.nix +++ b/pkgs/tools/system/efivar/default.nix @@ -1,17 +1,21 @@ -{ stdenv, fetchgit, popt }: +{ stdenv, fetchFromGitHub, popt }: stdenv.mkDerivation rec { name = "efivar-${version}"; - version = "0.15"; + version = "0.20"; - src = fetchgit { - url = "git://github.com/rhinstaller/efivar.git"; - rev = "refs/tags/${version}"; - sha256 = "1k5krjghb2r04wv6kxnhs1amqwzk7khzm7bsh0wnbsz7qn92masr"; + src = fetchFromGitHub { + owner = "rhinstaller"; + repo = "efivar"; + rev = version; + sha256 = "14c8x9dhi4scj42n1cf513b551c1ccm8lwpaqx8h8ydpm2k35qi4"; }; buildInputs = [ popt ]; + # 0.20 Relies on symbols from libdl.so which breaks efibootmgr + NIX_LDFLAGS = "-ldl"; + installFlags = [ "libdir=$(out)/lib" "mandir=$(out)/share/man" diff --git a/pkgs/tools/system/freeipmi/default.nix b/pkgs/tools/system/freeipmi/default.nix index 346bbef0bdf4..7e3ec2358c70 100644 --- a/pkgs/tools/system/freeipmi/default.nix +++ b/pkgs/tools/system/freeipmi/default.nix @@ -1,12 +1,12 @@ { fetchurl, stdenv, libgcrypt, readline }: stdenv.mkDerivation rec { - version = "1.4.8"; + version = "1.4.9"; name = "freeipmi-${version}"; src = fetchurl { url = "mirror://gnu/freeipmi/${name}.tar.gz"; - sha256 = "06smdsri1v5v2smrd3jxq3n135x7cx0npcimc37lb144gzgyk9wz"; + sha256 = "0v2xfwik2mv6z8066raiypc4xymjvr8pb0mv3mc3g4ym4km132qp"; }; buildInputs = [ libgcrypt readline ]; diff --git a/pkgs/tools/system/logrotate/default.nix b/pkgs/tools/system/logrotate/default.nix index 771de9205a93..af7e4543579f 100644 --- a/pkgs/tools/system/logrotate/default.nix +++ b/pkgs/tools/system/logrotate/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, gzip, popt }: stdenv.mkDerivation rec { - name = "logrotate-3.8.9"; + name = "logrotate-3.9.1"; src = fetchurl { url = "https://fedorahosted.org/releases/l/o/logrotate/${name}.tar.gz"; - sha256 = "19yzs7gc8ixr6iqq22n5gbixmvzsgmwp96kp4jiwr8bjj37df3kh"; + sha256 = "0i95qnacv5wf7kfkcpi38ys3i14fr01ifhm8b4ari04c53inj9q2"; }; # Logrotate wants to access the 'mail' program; to be done. diff --git a/pkgs/tools/system/rsyslog/default.nix b/pkgs/tools/system/rsyslog/default.nix index a9fdcf6fa64d..0878902af868 100644 --- a/pkgs/tools/system/rsyslog/default.nix +++ b/pkgs/tools/system/rsyslog/default.nix @@ -11,11 +11,11 @@ let mkFlag = cond: name: if cond then "--enable-${name}" else "--disable-${name}"; in stdenv.mkDerivation rec { - name = "rsyslog-8.9.0"; + name = "rsyslog-8.10.0"; src = fetchurl { url = "http://www.rsyslog.com/files/download/rsyslog/${name}.tar.gz"; - sha256 = "1p3saxfs723479rbsdyvqwfrblcp0bw6mkz2ncrxvnccfn70xc7a"; + sha256 = "04k90v7fm1czg3lm5anfnf5cnxcxyhxldkgwzzi1k0hhczrz6bdr"; }; buildInputs = [ diff --git a/pkgs/tools/system/stress-ng/default.nix b/pkgs/tools/system/stress-ng/default.nix index 2a0b2816ba70..af09b7af0308 100644 --- a/pkgs/tools/system/stress-ng/default.nix +++ b/pkgs/tools/system/stress-ng/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, attr }: -let version = "0.04.05"; in +let version = "0.04.06"; in stdenv.mkDerivation rec { name = "stress-ng-${version}"; src = fetchurl { - sha256 = "1xj3rrcvpjl3sgvl22m0bdrkscxxnipzh4s1ivmrifw7lq2zq1kg"; + sha256 = "1iwl16gzxl1gq7gkn6pwhk6ss641n11wgf37yd47jcdr5pac6z9s"; url = "http://kernel.ubuntu.com/~cking/tarballs/stress-ng/${name}.tar.gz"; }; diff --git a/pkgs/tools/system/thermald/default.nix b/pkgs/tools/system/thermald/default.nix index 86d121f0c22f..85bc40caa274 100644 --- a/pkgs/tools/system/thermald/default.nix +++ b/pkgs/tools/system/thermald/default.nix @@ -1,13 +1,16 @@ -{ stdenv, fetchurl, unzip, autoconf, automake, libtool, pkgconfig, dbus_libs, dbus_glib, libxml2 }: +{ stdenv, fetchFromGitHub, autoconf, automake, libtool, pkgconfig, dbus_libs, dbus_glib, libxml2 }: stdenv.mkDerivation rec { - version = "1.3"; + version = "1.4.2"; name = "thermald-${version}"; - src = fetchurl { - url = "https://github.com/01org/thermal_daemon/archive/v${version}.zip"; - sha256 = "0jqxc8vvd4lx4z0kcdisk8lpdf823nysvjcfjxlr5wzla1xysqwc"; + src = fetchFromGitHub { + owner = "01org"; + repo = "thermal_daemon"; + rev = "v${version}"; + sha256 = "051119wb0n31rn15pnx56d1r58a2d1fmj030q991mcv7pcy6c8mg"; }; - buildInputs = [ unzip autoconf automake libtool pkgconfig dbus_libs dbus_glib libxml2 ]; + + buildInputs = [ autoconf automake libtool pkgconfig dbus_libs dbus_glib libxml2 ]; patchPhase = ''sed -e 's/upstartconfdir = \/etc\/init/upstartconfdir = $(out)\/etc\/init/' -i data/Makefile.am''; @@ -25,12 +28,11 @@ stdenv.mkDerivation rec { preInstall = "sysconfdir=$out/etc"; - meta = { + meta = with stdenv.lib; { description = "Thermal Daemon"; - longDescription = '' - Thermal Daemon - ''; homepage = https://01.org/linux-thermal-daemon; - license = stdenv.lib.licenses.gpl2; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = with maintainers; [ abbradar ]; }; } diff --git a/pkgs/tools/text/aha/default.nix b/pkgs/tools/text/aha/default.nix index a0be19607ea5..4ae8048623c9 100644 --- a/pkgs/tools/text/aha/default.nix +++ b/pkgs/tools/text/aha/default.nix @@ -18,7 +18,6 @@ stdenv.mkDerivation rec { aha takes ANSI SGR-coloured input and produces W3C-conformant HTML code. ''; homepage = https://github.com/theZiz/aha; - downloadPage = https://github.com/theZiz/aha/releases; license = with licenses; [ lgpl2Plus mpl11 ]; platforms = with platforms; linux; maintainers = with maintainers; [ nckx ]; diff --git a/pkgs/tools/text/cheetah-template/2.0.1.nix b/pkgs/tools/text/cheetah-template/2.0.1.nix deleted file mode 100644 index 0bfa72ca00d5..000000000000 --- a/pkgs/tools/text/cheetah-template/2.0.1.nix +++ /dev/null @@ -1,18 +0,0 @@ -args : with args; -rec { - src = fetchurl { - url = mirror://sourceforge/cheetahtemplate/Cheetah-2.0.1.tar.gz; - sha256 = "134k4s5f116k23vb7wf9bynlx3gf0wwl7y0zp9ciz0q66nh1idkh"; - }; - - buildInputs = [python makeWrapper]; - configureFlags = []; - - /* doConfigure should be specified separately */ - phaseNames = ["installPythonPackage" (makeManyWrappers ''$out/bin/*'' ''--prefix PYTHONPATH : $(toPythonPath $out)'')]; - - name = "cheetah-template-2.0.1"; - meta = { - description = "Templating engine"; - }; -} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 6cf9fed11ae2..552694be44ce 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -635,6 +635,9 @@ let oracle-instantclient = callPackage ../development/libraries/oracle-instantclient { }; + derez = callPackage ../os-specific/darwin/derez { }; + rez = callPackage ../os-specific/darwin/rez { }; + setfile = callPackage ../os-specific/darwin/setfile { }; install_name_tool = callPackage ../os-specific/darwin/install_name_tool { }; @@ -814,6 +817,8 @@ let ddate = callPackage ../tools/misc/ddate { }; + dfilemanager = callPackage ../applications/misc/dfilemanager { }; + diagrams-builder = callPackage ../tools/graphics/diagrams-builder { inherit (haskellngPackages) ghcWithPackages diagrams-builder; }; @@ -988,6 +993,8 @@ let cadaver = callPackage ../tools/networking/cadaver { }; + davix = callPackage ../tools/networking/davix { }; + cantata = callPackage ../applications/audio/cantata { }; can-utils = callPackage ../os-specific/linux/can-utils { }; @@ -1022,10 +1029,6 @@ let checkinstall = callPackage ../tools/package-management/checkinstall { }; - cheetahTemplate = builderDefsPackage (import ../tools/text/cheetah-template/2.0.1.nix) { - inherit makeWrapper python; - }; - chkrootkit = callPackage ../tools/security/chkrootkit { }; chocolateDoom = callPackage ../games/chocolate-doom { }; @@ -1278,6 +1281,8 @@ let doomseeker = callPackage ../applications/misc/doomseeker { }; + drive = callPackage ../applications/networking/drive { }; + dropbear = callPackage ../tools/networking/dropbear { }; dtach = callPackage ../tools/misc/dtach { }; @@ -1788,6 +1793,8 @@ let hwinfo = callPackage ../tools/system/hwinfo { }; + i2c-tools = callPackage ../os-specific/linux/i2c-tools { }; + i2p = callPackage ../tools/networking/i2p {}; i2pd = callPackage ../tools/networking/i2pd {}; @@ -1963,7 +1970,7 @@ let else nodePackages_0_12; - iojs = callPackage ../development/web/iojs { libuv = libuvVersions.v1_5_0; }; + iojs = callPackage ../development/web/iojs { libuv = libuvVersions.v1_6_1; }; iojsPackages = callPackage ./node-packages.nix { self = iojsPackages; nodejs = iojs; }; @@ -2039,7 +2046,9 @@ let lshw = callPackage ../tools/system/lshw { }; - lxc = callPackage ../os-specific/linux/lxc { }; + lxc = callPackage ../os-specific/linux/lxc { + wrapPython = python3Packages.wrapPython; + }; lzip = callPackage ../tools/compression/lzip { }; @@ -2057,6 +2066,8 @@ let maildrop = callPackage ../tools/networking/maildrop { }; + mailnag = callPackage ../applications/networking/mailreaders/mailnag { }; + mailsend = callPackage ../tools/networking/mailsend { }; mailpile = callPackage ../applications/networking/mailreaders/mailpile { }; @@ -2065,6 +2076,8 @@ let guile = guile_1_8; }; + maim = callPackage ../tools/graphics/maim {}; + mairix = callPackage ../tools/text/mairix { }; makemkv = callPackage ../applications/video/makemkv { }; @@ -2678,6 +2691,8 @@ let privateer = callPackage ../games/privateer { }; + read-edid = callPackage ../os-specific/linux/read-edid { }; + redmine = callPackage ../applications/version-management/redmine { }; rtmpdump = callPackage ../tools/video/rtmpdump { }; @@ -2813,6 +2828,8 @@ let sdcv = callPackage ../applications/misc/sdcv { }; + sdl-jstest = callPackage ../tools/misc/sdl-jstest { }; + sec = callPackage ../tools/admin/sec { }; seccure = callPackage ../tools/security/seccure { }; @@ -2848,6 +2865,8 @@ let simplescreenrecorder = callPackage ../applications/video/simplescreenrecorder { }; + skippy-xd = callPackage ../tools/X11/skippy-xd {}; + skydns = callPackage ../servers/dns/skydns { }; sleuthkit = callPackage ../tools/system/sleuthkit {}; @@ -3144,7 +3163,16 @@ let vpnc = callPackage ../tools/networking/vpnc { }; - openconnect = callPackage ../tools/networking/openconnect.nix { }; + openconnect = openconnect_openssl; + + openconnect_openssl = callPackage ../tools/networking/openconnect.nix { + gnutls = null; + }; + + openconnect_gnutls = lowPrio (openconnect.override { + openssl = null; + gnutls = gnutls; + }); vtun = callPackage ../tools/networking/vtun { }; @@ -3156,6 +3184,10 @@ let welkin = callPackage ../tools/graphics/welkin {}; + wolfebin = callPackage ../tools/networking/wolfebin { + python = python2; + }; + xl2tpd = callPackage ../tools/networking/xl2tpd { }; testdisk = callPackage ../tools/misc/testdisk { }; @@ -3395,15 +3427,11 @@ let inherit (xlibs) libXt libXaw libXtst xextproto libXi libXpm gccmakedep; }; + xwinmosaic = callPackage ../tools/X11/xwinmosaic {}; + # To expose more packages for Yi, override the extraPackages arg. yi = callPackage ../applications/editors/yi/wrapper.nix { }; - youtube-dl = callPackage ../tools/misc/youtube-dl { - # Release versions don't need pandoc because the formatted man page - # is included in the tarball. - pandoc = null; - }; - zbar = callPackage ../tools/graphics/zbar { pygtk = lib.overrideDerivation pygtk (x: { gtk = gtk2; @@ -3945,23 +3973,28 @@ let openjdk7 = callPackage ../development/compilers/openjdk { bootjdk = openjdk7-bootstrap; }; - openjdk7_jre = openjdk7.jre; + openjdk7_jdk = openjdk7 // { outputs = [ "out" ]; }; + openjdk7_jre = openjdk7.jre // { outputs = [ "jre" ]; }; openjdk8 = callPackage ../development/compilers/openjdk/openjdk8.nix { bootjdk = openjdk8-bootstrap; }; - openjdk8_jre = openjdk8.jre; + openjdk8_jdk = openjdk8 // { outputs = [ "out" ]; }; + openjdk8_jre = openjdk8.jre // { outputs = [ "jre" ]; }; openjdk = if stdenv.isDarwin then openjdk-darwin else openjdk8; - jdk7 = openjdk7; - jre7 = jdk7.jre; + java7 = openjdk7; + jdk7 = java7 // { outputs = [ "out" ]; }; + jre7 = java7.jre // { outputs = [ "jre" ]; }; - jdk8 = openjdk8; - jre8 = jdk8.jre; + java8 = openjdk8; + jdk8 = java8 // { outputs = [ "out" ]; }; + jre8 = java8.jre // { outputs = [ "jre" ]; }; - jdk = if stdenv.isDarwin then openjdk-darwin else jdk8; - jre = jdk.jre; + java = if stdenv.isDarwin then openjdk-darwin else jdk8; + jdk = java // { outputs = [ "out" ]; }; + jre = java.jre // { outputs = [ "jre" ]; }; oraclejdk = pkgs.jdkdistro true false; @@ -4008,18 +4041,11 @@ let jikes = callPackage ../development/compilers/jikes { }; julia02 = callPackage ../development/compilers/julia/0.2.nix { - liblapack = liblapack.override {shared = true;}; llvm = llvm_33; suitesparse = suitesparse_4_2; }; - julia03 = let - liblapack = liblapack_3_5_0.override {shared = true;}; - in callPackage ../development/compilers/julia/0.3.nix { - inherit liblapack; - suitesparse = suitesparse_4_2.override { - inherit liblapack; - }; + julia03 = callPackage ../development/compilers/julia/0.3.nix { llvm = llvm_33; }; julia = julia03; @@ -4845,6 +4871,7 @@ let glpk = null; suitesparse = null; jdk = null; + openblas = openblasCompat; }; octaveFull = (lowPrio (callPackage ../development/interpreters/octave { fltk = fltk13.override { cfg.xftSupport = true; }; @@ -5996,12 +6023,11 @@ let fcgi = callPackage ../development/libraries/fcgi { }; ffmpeg_0_10 = callPackage ../development/libraries/ffmpeg/0.10.nix { }; - ffmpeg_0_11 = callPackage ../development/libraries/ffmpeg/0.11.nix { }; ffmpeg_1_2 = callPackage ../development/libraries/ffmpeg/1.2.nix { }; ffmpeg_2_2 = callPackage ../development/libraries/ffmpeg/2.2.nix { }; ffmpeg_2_6 = callPackage ../development/libraries/ffmpeg/2.6.nix { }; # Aliases - ffmpeg_0 = ffmpeg_0_11; + ffmpeg_0 = ffmpeg_0_10; ffmpeg_1 = ffmpeg_1_2; ffmpeg_2 = ffmpeg_2_6; ffmpeg = ffmpeg_2; @@ -6044,6 +6070,8 @@ let fmod = callPackage ../development/libraries/fmod { }; + fmod42416 = callPackage ../development/libraries/fmod/4.24.16.nix { }; + freeimage = callPackage ../development/libraries/freeimage { }; freetts = callPackage ../development/libraries/freetts { }; @@ -6254,7 +6282,7 @@ let gst_plugins_ugly = callPackage ../development/libraries/gstreamer/legacy/gst-plugins-ugly {}; gst_ffmpeg = callPackage ../development/libraries/gstreamer/legacy/gst-ffmpeg { - ffmpeg = ffmpeg_0_10; + ffmpeg = ffmpeg_0; }; gst_python = callPackage ../development/libraries/gstreamer/legacy/gst-python {}; @@ -6718,6 +6746,8 @@ let libebml = callPackage ../development/libraries/libebml { }; + libebur128 = callPackage ../development/libraries/libebur128 { }; + libedit = callPackage ../development/libraries/libedit { }; libelf = callPackage ../development/libraries/libelf { }; @@ -6750,6 +6780,10 @@ let libgnurl = callPackage ../development/libraries/libgnurl { }; + libgringotts = callPackage ../development/libraries/libgringotts { }; + + libgroove = callPackage ../development/libraries/libgroove { }; + libseccomp = callPackage ../development/libraries/libseccomp { }; libsecret = callPackage ../development/libraries/libsecret { }; @@ -6760,6 +6794,8 @@ let libLAS = callPackage ../development/libraries/libLAS { }; + liblaxjson = callPackage ../development/libraries/liblaxjson { }; + liblo = callPackage ../development/libraries/liblo { }; liblrdf = librdf; @@ -7216,7 +7252,7 @@ let automake = automake113x; # fails with 14 }); - libuv = libuvVersions.v1_5_0; + libuv = libuvVersions.v1_6_1; libv4l = lowPrio (v4l_utils.override { alsaLib = null; @@ -7526,7 +7562,9 @@ let openbr = callPackage ../development/libraries/openbr { }; - opencascade = callPackage ../development/libraries/opencascade { }; + opencascade = callPackage ../development/libraries/opencascade { + tcl = tcl-8_5; + }; opencascade_6_5 = callPackage ../development/libraries/opencascade/6.5.nix { automake = automake111x; @@ -7571,7 +7609,7 @@ let openscenegraph = callPackage ../development/libraries/openscenegraph { giflib = giflib_4_1; - ffmpeg = ffmpeg_0_10; + ffmpeg = ffmpeg_0; }; openspades = callPackage ../games/openspades {}; @@ -7980,6 +8018,8 @@ let sqlite3_analyzer = lowPrio (callPackage ../development/libraries/sqlite/sqlite3_analyzer.nix { }); + sqlite-amalgamation = callPackage ../development/libraries/sqlite-amalgamation { }; + sqlite-interactive = appendToName "interactive" (sqlite.override { interactive = true; }); sqlcipher = lowPrio (callPackage ../development/libraries/sqlcipher { @@ -8057,7 +8097,10 @@ let tinyxml2 = callPackage ../development/libraries/tinyxml/2.6.2.nix { }; - tk = callPackage ../development/libraries/tk { }; + tk = tk-8_6; + + tk-8_6 = callPackage ../development/libraries/tk/8.6.nix { }; + tk-8_5 = callPackage ../development/libraries/tk/8.5.nix { tcl = tcl-8_5; }; tnt = callPackage ../development/libraries/tnt { }; @@ -8197,6 +8240,8 @@ let withMesa = lib.elem system lib.platforms.mesaPlatforms; }; + wxmac = callPackage ../development/libraries/wxmac { }; + wtk = callPackage ../development/libraries/wtk { }; x264 = callPackage ../development/libraries/x264 { }; @@ -8581,6 +8626,7 @@ let R = callPackage ../applications/science/math/R { inherit (xlibs) libX11 libXt; texLive = texLiveAggregationFun { paths = [ texLive texLiveExtra ]; }; + openblas = openblasCompat; withRecommendedPackages = false; }; @@ -8737,6 +8783,8 @@ let ghostOne = callPackage ../servers/games/ghost-one { }; + groovebasin = callPackage ../applications/audio/groovebasin { }; + ircdHybrid = callPackage ../servers/irc/ircd-hybrid { }; jboss = callPackage ../servers/http/jboss { }; @@ -10389,6 +10437,8 @@ let a2jmidid = callPackage ../applications/audio/a2jmidid { }; + aacgain = callPackage ../applications/audio/aacgain { }; + aangifte2006 = callPackage_i686 ../applications/taxes/aangifte-2006 { }; aangifte2007 = callPackage_i686 ../applications/taxes/aangifte-2007 { }; @@ -10412,6 +10462,7 @@ let abiword = callPackage ../applications/office/abiword { inherit (gnome) libglade libgnomecanvas; + iconTheme = gnome3.defaultIconTheme; }; abook = callPackage ../applications/misc/abook { }; @@ -10474,7 +10525,7 @@ let audacious = callPackage ../applications/audio/audacious { }; audacity = callPackage ../applications/audio/audacity { - ffmpeg = ffmpeg_0_10; + ffmpeg = ffmpeg_0; }; milkytracker = callPackage ../applications/audio/milkytracker { }; @@ -10708,7 +10759,10 @@ let darcs = haskell.lib.overrideCabal haskellPackages.darcs (drv: { configureFlags = (stdenv.lib.remove "-flibrary" drv.configureFlags or []) ++ ["-f-library"]; enableSharedExecutables = false; + enableSharedLibraries = false; isLibrary = false; + doHaddock = false; + postFixup = "rm -rf $out/lib $out/nix-support $out/share"; }); darktable = callPackage ../applications/graphics/darktable { @@ -10725,6 +10779,8 @@ let pulseSupport = config.pulseaudio or true; }; + dfasma = callPackage ../applications/audio/dfasma { }; + dia = callPackage ../applications/graphics/dia { inherit (pkgs.gnome) libart_lgpl libgnomeui; }; @@ -10769,6 +10825,8 @@ let dvdauthor = callPackage ../applications/video/dvdauthor { }; + dvd-slideshow = callPackage ../applications/video/dvd-slideshow { }; + dwb = callPackage ../applications/networking/browsers/dwb { dconf = gnome3.dconf; }; dwbWrapper = wrapFirefox @@ -10918,6 +10976,8 @@ let metaweblog = callPackage ../applications/editors/emacs-modes/metaweblog { }; + monky = callPackage ../applications/editors/emacs-modes/monky { }; + notmuch = lowPrio (pkgs.notmuch.override { inherit emacs; }); ocamlMode = callPackage ../applications/editors/emacs-modes/ocaml { }; @@ -11105,7 +11165,7 @@ let blas liblapack libjpeg libpng mysql unixODBC mesa postgresql python readline sqlite tcl tk libtiff freetype makeWrapper wxGTK; fftw = fftwSinglePrec; - ffmpeg = ffmpeg_0_10; + ffmpeg = ffmpeg_0; motif = lesstif; opendwg = libdwg; wxPython = wxPython28; @@ -11148,6 +11208,7 @@ let firefox = callPackage ../applications/networking/browsers/firefox { inherit (gnome) libIDL; inherit (pythonPackages) pysqlite; + enableGTK3 = false; }; firefoxWrapper = wrapFirefox { browser = pkgs.firefox; }; @@ -11259,7 +11320,13 @@ let goffice = goffice_0_8; }; - goffice_0_8 = gnome3.goffice_0_8; + goffice = callPackage ../development/libraries/goffice { }; + + goffice_0_8 = callPackage ../development/libraries/goffice/0.8.nix { + inherit (pkgs.gnome2) libglade libgnomeui; + gconf = pkgs.gnome2.GConf; + libart = pkgs.gnome2.libart_lgpl; + }; idea = recurseIntoAttrs (callPackage ../applications/editors/idea { androidsdk = androidsdk_4_4; }); @@ -11572,9 +11639,7 @@ let keymon = callPackage ../applications/video/key-mon { }; - khal = callPackage ../applications/misc/khal { - pythonPackages = python3Packages; - }; + khal = callPackage ../applications/misc/khal { }; kid3 = callPackage ../applications/audio/kid3 { qt = qt4; @@ -11600,6 +11665,10 @@ let fftw = fftwSinglePrec; }; + ladspaPlugins-git = callPackage ../applications/audio/ladspa-plugins/git.nix { + fftw = fftwSinglePrec; + }; + ladspa-sdk = callPackage ../applications/audio/ladspa-sdk { }; caps = callPackage ../applications/audio/caps { }; @@ -12013,6 +12082,8 @@ let opusTools = callPackage ../applications/audio/opus-tools { }; + osmo = callPackage ../applications/office/osmo { }; + pamixer = callPackage ../applications/audio/pamixer { }; pan = callPackage ../applications/networking/newsreaders/pan { @@ -12206,6 +12277,8 @@ let rapidsvn = callPackage ../applications/version-management/rapidsvn { }; + ratmen = callPackage ../tools/X11/ratmen {}; + ratox = callPackage ../applications/networking/instant-messengers/ratox { }; ratpoison = callPackage ../applications/window-managers/ratpoison { }; @@ -12319,6 +12392,8 @@ let slmenu = callPackage ../applications/misc/slmenu {}; + slop = callPackage ../tools/misc/slop {}; + slrn = callPackage ../applications/networking/newsreaders/slrn { }; sooperlooper = callPackage ../applications/audio/sooperlooper { }; @@ -12405,7 +12480,6 @@ let sonic-visualiser = callPackage ../applications/audio/sonic-visualiser { inherit (pkgs.vamp) vampSDK; inherit (pkgs.xlibs) libX11; - fftw = pkgs.fftwSinglePrec; }; sox = callPackage ../applications/misc/audio/sox { }; @@ -12477,7 +12551,9 @@ let # linux only by now synergy = callPackage ../applications/misc/synergy { }; - tabbed = callPackage ../applications/window-managers/tabbed { }; + tabbed = callPackage ../applications/window-managers/tabbed { + enableXft = true; + }; tagainijisho = callPackage ../applications/office/tagainijisho {}; @@ -12547,8 +12623,8 @@ let thunderbird-bin = callPackage ../applications/networking/mailreaders/thunderbird-bin { gconf = pkgs.gnome.GConf; inherit (pkgs.gnome) libgnome libgnomeui; - inherit (pkgs.xlibs) libX11 libXScrnSaver libXext - libXinerama libXrender libXt; + inherit (pkgs.xlibs) libX11 libXScrnSaver libXcomposite libXdamage libXext + libXfixes libXinerama libXrender libXt; }; tig = gitAndTools.tig; @@ -12641,9 +12717,7 @@ let vcprompt = callPackage ../applications/version-management/vcprompt { }; - vdirsyncer = callPackage ../tools/misc/vdirsyncer { - pythonPackages = python3Packages; - }; + vdirsyncer = callPackage ../tools/misc/vdirsyncer { }; vdpauinfo = callPackage ../tools/X11/vdpauinfo { }; @@ -13411,7 +13485,7 @@ let stardust = callPackage ../games/stardust {}; - steam-original = callPackage ../games/steam { }; + steam-original = lowPrio (callPackage ../games/steam { }); steam = callPackage ../games/steam/chrootenv.nix { }; @@ -13439,6 +13513,8 @@ let tintin = callPackage ../games/tintin { }; + tome4 = callPackage ../games/tome4 { }; + tpm = callPackage ../games/thePenguinMachine { }; tremulous = callPackage ../games/tremulous { }; @@ -13465,7 +13541,7 @@ let ultimatestunts = callPackage ../games/ultimatestunts { }; ultrastardx = callPackage ../games/ultrastardx { - ffmpeg = ffmpeg_0_10; + ffmpeg = ffmpeg_0; lua = lua5; }; @@ -13509,7 +13585,10 @@ let xboard = callPackage ../games/xboard { }; - xconq = callPackage ../games/xconq {}; + xconq = callPackage ../games/xconq { + tcl = tcl-8_5; + tk = tk-8_5; + }; # TODO: the corresponding nix file is missing # xracer = callPackage ../games/xracer { }; @@ -13524,6 +13603,10 @@ let inherit (xlibs) libX11 xproto libXpm libXt; }; + zandronum = callPackage ../games/zandronum { }; + zandronum-server = callPackage ../games/zandronum/server.nix { }; + zandronum-bin = callPackage ../games/zandronum/bin.nix { }; + zdoom = callPackage ../games/zdoom { }; zod = callPackage ../games/zod { }; @@ -13572,10 +13655,7 @@ let inherit (pkgs) libsoup libwnck gtk_doc gnome_doc_utils; }; - gnome3_16 = recurseIntoAttrs (callPackage ../desktops/gnome-3/3.16 { - callPackage = pkgs.newScope pkgs.gnome3_16; - self = pkgs.gnome3_16; - }); + gnome3_16 = recurseIntoAttrs (callPackage ../desktops/gnome-3/3.16 { }); gnome3 = gnome3_16; @@ -13818,6 +13898,7 @@ let plasma53 = recurseIntoAttrs (callPackage ../desktops/plasma-5.3 { kf5 = kf510; + kdeApps = kdeApps_15_04; }); plasma5_latest = plasma53; plasma5_stable = plasma53; @@ -13909,9 +13990,11 @@ let liblbfgs = callPackage ../development/libraries/science/math/liblbfgs { }; - openblas = callPackage ../development/libraries/science/math/openblas { - liblapack = liblapack_3_5_0; - }; + openblas = callPackage ../development/libraries/science/math/openblas { }; + + # A version of OpenBLAS using 32-bit integers on all platforms for compatibility with + # standard BLAS and LAPACK. + openblasCompat = openblas.override { blas64 = false; }; mathematica = callPackage ../applications/science/math/mathematica { }; mathematica9 = callPackage ../applications/science/math/mathematica/9.nix { }; @@ -13919,9 +14002,10 @@ let sage = callPackage ../applications/science/math/sage { }; suitesparse_4_2 = callPackage ../development/libraries/science/math/suitesparse/4.2.nix { }; - suitesparse_4_4_1 = callPackage ../development/libraries/science/math/suitesparse {}; + suitesparse_4_4 = callPackage ../development/libraries/science/math/suitesparse {}; + suitesparse = suitesparse_4_4; - ipopt = callPackage ../development/libraries/science/math/ipopt { }; + ipopt = callPackage ../development/libraries/science/math/ipopt { openblas = openblasCompat; }; ### SCIENCE/MOLECULAR-DYNAMICS @@ -13974,6 +14058,8 @@ let mkCoqPackages_8_4 = self: let callPackage = newScope self; in { + inherit callPackage; + bedrock = callPackage ../development/coq-modules/bedrock {}; contribs = @@ -14016,19 +14102,18 @@ let mkCoqPackages_8_5 = self: let callPackage = newScope self; in rec { - mathcomp = callPackage ../development/coq-modules/mathcomp/1.5.nix { - coq = coq_8_5; - ssreflect = ssreflect; - }; + inherit callPackage; - ssreflect = callPackage ../development/coq-modules/ssreflect/1.5.nix { - coq = coq_8_5; - }; + coq = coq_8_5; + + mathcomp = callPackage ../development/coq-modules/mathcomp { }; + + ssreflect = callPackage ../development/coq-modules/ssreflect { }; }; coqPackages = recurseIntoAttrs (mkCoqPackages_8_4 coqPackages); - coqPackages_8_5 = recurseIntoAttrs (mkCoqPackages_8_5 coqPackages); + coqPackages_8_5 = recurseIntoAttrs (mkCoqPackages_8_5 coqPackages_8_5); cvc3 = callPackage ../applications/science/logic/cvc3 {}; cvc4 = callPackage ../applications/science/logic/cvc4 {}; @@ -14103,6 +14188,8 @@ let satallax = callPackage ../applications/science/logic/satallax {}; + saw-tools = callPackage ../applications/science/logic/saw-tools {}; + spass = callPackage ../applications/science/logic/spass {}; tptp = callPackage ../applications/science/logic/tptp {}; @@ -14362,7 +14449,9 @@ let gnuk-unstable = callPackage ../misc/gnuk/unstable.nix { }; gnuk-git = callPackage ../misc/gnuk/git.nix { }; - guix = callPackage ../tools/package-management/guix { }; + guix = callPackage ../tools/package-management/guix { + libgcrypt = libgcrypt_1_5; + }; gxemul = callPackage ../misc/emulators/gxemul { }; @@ -14405,10 +14494,13 @@ let stateDir = config.nix.stateDir or "/nix/var"; }; - nixUnstable = callPackage ../tools/package-management/nix/unstable.nix { + nixUnstable = nixStable; + /* + nixUnstable = lowPrio (callPackage ../tools/package-management/nix/unstable.nix { storeDir = config.nix.storeDir or "/nix/store"; stateDir = config.nix.stateDir or "/nix/var"; - }; + }); + */ nixops = callPackage ../tools/package-management/nixops { }; @@ -14641,6 +14733,10 @@ let utf8proc = callPackage ../development/libraries/utf8proc { }; + vbam = callPackage ../misc/emulators/vbam { + inherit (xlibs) libpthreadstubs; + }; + vice = callPackage ../misc/emulators/vice { libX11 = xlibs.libX11; giflib = giflib_4_1; @@ -14790,6 +14886,7 @@ let lttngUst = lttng-ust; # added 2014-07-31 jquery_ui = jquery-ui; # added 2014-09-07 youtubeDL = youtube-dl; # added 2014-10-26 + youtube-dl = pythonPackages.youtube-dl; # added 2015-06-07 rdiff_backup = rdiff-backup; # added 2014-11-23 htmlTidy = html-tidy; # added 2014-12-06 libtidy = html-tidy; # added 2014-12-21 @@ -14802,6 +14899,7 @@ let haskell-ng = haskell; # 2015-04-19 haskellngPackages = haskellPackages; # 2015-04-19 inherit (haskell.compiler) jhc uhc; # 2015-05-15 + cheetahTemplate = pythonPackages.cheetah; # 2015-06-15 opentsdb = callPackage ../tools/misc/opentsdb {}; diff --git a/pkgs/top-level/dotnet-packages.nix b/pkgs/top-level/dotnet-packages.nix index 852856d4c693..e08af379da8d 100644 --- a/pkgs/top-level/dotnet-packages.nix +++ b/pkgs/top-level/dotnet-packages.nix @@ -14,6 +14,8 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; { + # BINARY PACKAGES + Autofac = fetchNuGet { baseName = "Autofac"; version = "3.5.2"; @@ -44,6 +46,13 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; { outputFiles = [ "lib/net40/*" ]; }; + FSharpDataSQLProvider = fetchNuGet { + baseName = "SQLProvider"; + version = "0.0.9-alpha"; + sha256 = "1wmgr5ca9hh6a7f0s8yc87n6arn7bq6nwc8n4crbbdil4r0bw46w"; + outputFiles = [ "lib/net40/*" ]; + }; + FsCheck = fetchNuGet { baseName = "FsCheck"; version = "1.0.4"; @@ -58,6 +67,13 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; { outputFiles = [ "lib/net45/*" ]; }; + FsPickler = fetchNuGet { + baseName = "FsPickler"; + version = "1.2.9"; + sha256 = "12fgcj7pvffsj1s1kaz15j22i1n98dy5mf4z84555xdf7mw7dpm4"; + outputFiles = [ "lib/net45/*" ]; + }; + FsUnit = fetchNuGet { baseName = "FsUnit"; version = "1.3.0.1"; @@ -87,6 +103,16 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; { outputFiles = [ "lib/portable-net45+win8+wp8+wpa81/*" ]; }; + Suave = fetchNuGet { + baseName = "Suave"; + version = "0.29.0"; + propagatedBuildInputs = [ FsPickler ]; + sha256 = "0rgqy0afwm50gq5ca94w16s565yx5wf961683ghfld6ir0k3dhln"; + outputFiles = [ "lib/net40/*" ]; + }; + + # SOURCE PACKAGES + ExtCore = buildDotnetPackage rec { baseName = "ExtCore"; version = "0.8.46"; @@ -492,4 +518,5 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; { platforms = with stdenv.lib.platforms; linux; }; }; + }; in self diff --git a/pkgs/top-level/go-packages.nix b/pkgs/top-level/go-packages.nix index 1181d8e2b607..874a5d316e60 100644 --- a/pkgs/top-level/go-packages.nix +++ b/pkgs/top-level/go-packages.nix @@ -84,11 +84,7 @@ let sha256 = "0hi54mm63ha7a75avydj6xm0a4dd2njdzllr9y2si1i1wnijqw2i"; }; - extraSrcs = [ - { inherit (gcloud-golang) src goPackagePath; } - ]; - - propagatedBuildInputs = [ net ]; + propagatedBuildInputs = [ net gcloud-golang-compute-metadata ]; }; @@ -106,6 +102,22 @@ let }; }; + gogo.protobuf = buildGoPackage rec { + rev = "499788908625f4d83de42a204d1350fde8588e4f"; + name = "protobuf-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/gogo/protobuf"; + goPackageAliases = [ "code.google.com/p/gogoprotobuf/proto" "code.google.com/p/goprotobuf/proto" ]; + + src = fetchFromGitHub { + inherit rev; + owner = "gogo"; + repo = "protobuf"; + sha256 = "09h2j0apl70709nbqasqrkss6fdk99xm7xr5ci311dl48rmm1dzn"; + }; + + subPackages = [ "proto" ]; + }; + text = buildGoPackage rec { rev = "c93e7c9fff19fb9139b5ab04ce041833add0134e"; name = "text-${stdenv.lib.strings.substring 0 7 rev}"; @@ -348,6 +360,18 @@ let propagatedBuildInputs = [ crypto ]; }; + cli-spinner = buildGoPackage rec { + rev = "610063bb4aeef25f7645b3e6080456655ec0fb33"; + name = "cli-spinner-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/cli-spinner"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "cli-spinner"; + sha256 = "13wzs2qrxd72ah32ym0ppswhvyimjw5cqaq3q153y68vlvxd048c"; + }; + }; + cobra = buildGoPackage rec { date = "20140617"; rev = "10a8494a87448bf5003222d9974f166437e7f042"; @@ -374,6 +398,18 @@ let }; }; + command = buildGoPackage rec { + rev = "076a2ad5f3a7ec92179f2d57208728432280ec4e"; + name = "command-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/command"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "command"; + sha256 = "093as4kxlabk3hrsd52kr9fhl6qafr4ghg89cjyglsva0mk0n7sb"; + }; + }; + copystructure = buildGoPackage rec { rev = "6fc66267e9da7d155a9d3bd489e00dad02666dc6"; name = "copystructure-${stdenv.lib.strings.substring 0 7 rev}"; @@ -533,6 +569,19 @@ let buildInputs = [ go-multierror go-syslog hcl logutils mapstructure ]; }; + context = buildGoPackage rec { + rev = "215affda49addc4c8ef7e2534915df2c8c35c6cd"; + name = "config-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/gorilla/context"; + + src = fetchFromGitHub { + inherit rev; + owner = "gorilla"; + repo = "context"; + sha256 = "1ybvjknncyx1f112mv28870n0l7yrymsr0861vzw10gc4yn1h97g"; + }; + }; + dbus = buildGoPackage rec { rev = "a5942dec6340eb0d57f43f2003c190ce06e43dea"; name = "dbus-${stdenv.lib.strings.substring 0 7 rev}"; @@ -574,6 +623,18 @@ let }; }; + dts = buildGoPackage rec { + rev = "ec2daabf2f9078e887405f7bcddb3d79cb65502d"; + name = "dts-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/dts"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "dts"; + sha256 = "0vq3cz4ab9vdsz9s0jjlp7z27w218jjabjzsh607ps4i8m5d441s"; + }; + }; + ed25519 = buildGoPackage rec { rev = "d2b94fd789ea21d12fac1a4443dd3a3f79cda72c"; name = "ed25519-${stdenv.lib.strings.substring 0 7 rev}"; @@ -652,6 +713,12 @@ let buildInputs = [ net oauth2 protobuf google-api-go-client grpc ]; }; + gcloud-golang-compute-metadata = buildGoPackage rec { + inherit (gcloud-golang) rev name goPackagePath src; + subPackages = [ "compute/metadata" ]; + buildInputs = [ net ]; + }; + ginkgo = buildGoPackage rec { rev = "5ed93e443a4b7dfe9f5e95ca87e6082e503021d2"; name = "ginkgo-${stdenv.lib.strings.substring 0 7 rev}"; @@ -719,6 +786,20 @@ let }; }; + dgnorton.goback = buildGoPackage rec { + rev = "a49ca3c0a18f50ae0b8a247e012db4385e516cf4"; + name = "goback-${stdenv.lib.strings.substring 0 7 rev}"; + + goPackagePath = "github.com/dgnorton/goback"; + + src = fetchFromGitHub { + inherit rev; + owner = "dgnorton"; + repo = "goback"; + sha256 = "1nyg6sckwd0iafs9vcmgbga2k3hid2q0avhwj29qbdhj3l78xi47"; + }; + }; + gocheck = buildGoPackage rec { rev = "87"; name = "gocheck-${rev}"; @@ -769,6 +850,19 @@ let }; }; + influx.gomdb = buildGoPackage rec { + rev = "29fe330c5ab33c4e48470bd4b980bf522471190a"; + name = "gomdb-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/influxdb/gomdb"; + + src = fetchFromGitHub { + inherit rev; + owner = "influxdb"; + repo = "gomdb"; + sha256 = "0yg1jpr7lcaqh6i8n9wbs9r128kk541qjv06r9a6fp9vj56rqr3m"; + }; + }; + govers = buildGoPackage rec { rev = "3b5f175f65d601d06f48d78fcbdb0add633565b9"; name = "govers-${stdenv.lib.strings.substring 0 7 rev}"; @@ -880,6 +974,23 @@ let buildInputs = [ net ]; }; + odeke-em.google-api-go-client = buildGoPackage rec { + rev = "30f4c144b02321ebbc712f35dc95c3e72a5a7fdc"; + name = "odeke-em-google-api-go-client-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/google-api-go-client"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "google-api-go-client"; + sha256 = "1fidlljxnd82i2r9yia0b9gh0vv3hwb5k65papnvw7sqpc4sriby"; + }; + preBuild = '' + rm -rf go/src/${goPackagePath}/examples + ''; + buildInputs = [ net ]; + propagatedBuildInputs = [ google-api-go-client ]; + }; + gopass = buildGoPackage rec { rev = "2c70fa70727c953c51695f800f25d6b44abb368e"; name = "gopass-${stdenv.lib.strings.substring 0 7 rev}"; @@ -1122,6 +1233,18 @@ let }; }; + go-isatty = buildGoPackage rec { + rev = "ae0b1f8f8004be68d791a576e3d8e7648ab41449"; + name = "go-isatty-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/mattn/go-isatty"; + src = fetchFromGitHub { + inherit rev; + owner = "mattn"; + repo = "go-isatty"; + sha256 = "0qrcsh7j9mxcaspw8lfxh9hhflz55vj4aq1xy00v78301czq6jlj"; + }; + }; + go-log = buildGoPackage rec { rev = "70d039bee4b0e389e5be560491d8291708506f59"; name = "go-log-${stdenv.lib.strings.substring 0 7 rev}"; @@ -1148,7 +1271,20 @@ let sha256 = "07dc74kiam8v5my7rhi3yxqrpnaapladhk8b3qbnrpjk3shvnx5f"; }; - buildInputs = [ influxdb stathat ]; + buildInputs = [ influxdb8 stathat ]; + }; + + appengine = buildGoPackage rec { + rev = "25b8450bec636c6b6e3b9b33d3a3f55230b10812"; + name = "appengine-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "google.golang.org/appengine"; + src = fetchFromGitHub { + inherit rev; + owner = "golang"; + repo = "appengine"; + sha256 = "1b0v244hmw8078601v18xda501aix0kw4q2m1g3ai33dl0p2dh2n"; + }; + buildInputs = [ protobuf net ]; }; armon.go-metrics = buildGoPackage rec { @@ -1378,6 +1514,7 @@ let sha256 = "07dfpwwk68rrhxmqj69gq2ncsf3kfmn0zhlwscda0gc5gb57n5x1"; }; + buildInputs = [ gcloud-golang-compute-metadata ]; propagatedBuildInputs = [ http2 glog net protobuf oauth2 ]; }; @@ -1469,7 +1606,7 @@ let }; influxdb = buildGoPackage rec { - rev = "d80ef2286d476d9e306548305e47c3ba967f5bc2"; + rev = "50a2b9ba0f189213fc399f59247787e71b872b2d"; name = "influxdb-${stdenv.lib.strings.substring 0 7 rev}"; goPackagePath = "github.com/influxdb/influxdb"; goPackageAliases = [ @@ -1480,10 +1617,10 @@ let inherit rev; owner = "influxdb"; repo = "influxdb"; - sha256 = "0p3s0pbn5x294qg2r0qgysb5wmspsvjxhccxh2hs6hc24dl6y93b"; + sha256 = "0spwnr9dwxwrjxrajpcspj3aci2ylkrm085jhq7rd99nmbsms6jq"; }; - propagatedBuildInputs = [ bolt crypto statik liner toml pat gollectd ]; + propagatedBuildInputs = [ bolt crypto statik liner toml pat gollectd gogo.protobuf raft raft-boltdb pool ]; }; influxdb8 = buildGoPackage rec { @@ -1501,7 +1638,7 @@ let sha256 = "0xpigp76rlsxqj93apjzkbi98ha5g4678j584l6hg57p711gqsdv"; }; - buildInputs = [ statik crypto protobuf log4go toml pmylund.go-cache ]; + buildInputs = [ statik crypto gogo.protobuf log4go toml pmylund.go-cache gollectd pat dgnorton.goback mux context gocheck influx.gomdb levigo ]; }; eckardt.influxdb-go = buildGoPackage rec { @@ -1557,6 +1694,23 @@ let propagatedBuildInputs = [ asn1-ber ]; }; + levigo = buildGoPackage rec { + rev = "1ddad808d437abb2b8a55a950ec2616caa88969b"; + name = "logrus-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/jmhodges/levigo"; + + excludedPackages = "examples"; + + src = fetchFromGitHub { + inherit rev; + owner = "jmhodges"; + repo = "levigo"; + sha256 = "1lmafyk7nglhig3n471jq4hmnqf45afj5ldb2jx0253f5ii4r2yq"; + }; + + buildInputs = [ pkgs.leveldb ]; + }; + liner = buildGoPackage rec { rev = "1bb0d1c1a25ed393d8feb09bab039b2b1b1fbced"; name = "liner-${stdenv.lib.strings.substring 0 7 rev}"; @@ -1570,6 +1724,18 @@ let }; }; + odeke-em.log = buildGoPackage rec { + rev = "cad53c4565a0b0304577bd13f3862350bdc5f907"; + name = "log-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/log"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "log"; + sha256 = "059c933qjikxlvaywzpzljqnab19svymbv6x32pc7khw156fh48w"; + }; + }; + log4go = buildGoPackage rec { rev = "cb4cc51cd03958183d3b637d0750497d88c2f7a8"; name = "log4go-${stdenv.lib.strings.substring 0 7 rev}"; @@ -1715,6 +1881,21 @@ let }; }; + mux = buildGoPackage rec { + rev = "47e8f450ef38c857cdd922ec08862ca9d65a1c6d"; + name = "mux-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/gorilla/mux"; + + src = fetchFromGitHub { + inherit rev; + owner = "gorilla"; + repo = "mux"; + sha256 = "03z7pk95z3314s3jryp6vs33209fj147g5jb2f331567gzld3b9g"; + }; + + buildInputs = [ context ]; + }; + muxado = buildGoPackage rec { rev = "f693c7e88ba316d1a0ae3e205e22a01aa3ec2848"; name = "muxado-${stdenv.lib.strings.substring 0 7 rev}"; @@ -1904,6 +2085,18 @@ let }; }; + pb = buildGoPackage rec { + rev = "e648e12b78cedf14ebb2fc1855033f07b034cfbb"; + name = "pb-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/cheggaaa/pb"; + src = fetchFromGitHub { + inherit rev; + owner = "cheggaaa"; + repo = "pb"; + sha256 = "03k4cars7hcqqgdsd0minfls2p7gjpm8q6y8vknh1s68kvxd4xam"; + }; + }; + beorn7.perks = buildGoPackage rec { rev = "b965b613227fddccbfffe13eae360ed3fa822f8d"; name = "beorn7.perks-${stdenv.lib.strings.substring 0 7 rev}"; @@ -1930,6 +2123,19 @@ let doCheck = false; # bad import path in tests }; + pool = buildGoPackage rec { + rev = "v2.0.0"; + name = "pq-${rev}"; + goPackagePath = "gopkg.in/fatih/pool.v2"; + + src = fetchFromGitHub { + inherit rev; + owner = "fatih"; + repo = "pool"; + sha256 = "1jlrakgnpvhi2ny87yrsj1gyrcncfzdhypa9i2mlvvzqlj4r0dn0"; + }; + }; + pq = buildGoPackage rec { rev = "93e9980741c9e593411b94e07d5bad8cfb4809db"; name = "pq-${stdenv.lib.strings.substring 0 7 rev}"; @@ -2168,6 +2374,18 @@ let }; }; + ripper = buildGoPackage rec { + rev = "bd1a682568fcb8a480b977bb5851452fc04f9ccb"; + name = "ripper-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/ripper"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "ripper"; + sha256 = "010jsclnmkaywdlyfqdmq372q7kh3qbz2zra0c4wn91qnkmkrnw1"; + }; + }; + sandblast = buildGoPackage rec { rev = "694d24817b9b7b8bacb6d458b7989b30d7fe3555"; name = "sandblast-${stdenv.lib.strings.substring 0 7 rev}"; @@ -2278,6 +2496,18 @@ let }; }; + statos = buildGoPackage rec { + rev = "f27d6ab69b62abd9d9fe80d355e23a3e45d347d6"; + name = "statos-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/statos"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "statos"; + sha256 = "17cpks8bi9i7p8j38x0wy60jb9g39wbzszcmhx4hlq6yzxr04jvs"; + }; + }; + statik = buildGoPackage rec { rev = "274df120e9065bdd08eb1120e0375e3dc1ae8465"; name = "statik-${stdenv.lib.strings.substring 0 7 rev}"; @@ -2462,4 +2692,16 @@ let }; }; + xon = buildGoPackage rec { + rev = "d580be739d723da4f6378083128f93017b8ab295"; + name = "xon-${stdenv.lib.strings.substring 0 7 rev}"; + goPackagePath = "github.com/odeke-em/xon"; + src = fetchFromGitHub { + inherit rev; + owner = "odeke-em"; + repo = "xon"; + sha256 = "07a7zj01d4a23xqp01m48jp2v5mw49islf4nbq2rj13sd5w4s6sc"; + }; + }; + }; in self diff --git a/pkgs/top-level/lua-packages.nix b/pkgs/top-level/lua-packages.nix index 84befe7f652f..c1b04afba38c 100644 --- a/pkgs/top-level/lua-packages.nix +++ b/pkgs/top-level/lua-packages.nix @@ -33,8 +33,11 @@ let sha256 = "16fffbrgfcw40kskh2bn9q7m3gajffwd2f35rafynlnd7llwj1qj"; }; + buildFlags = stdenv.lib.optionalString stdenv.isDarwin "macosx"; + preBuild = '' makeFlagsArray=( + ${stdenv.lib.optionalString stdenv.cc.isClang "CC=$CC"} INCLUDES="-I${lua}/include" LUA="${lua}/bin/lua"); ''; diff --git a/pkgs/top-level/python-packages-generated.nix b/pkgs/top-level/python-packages-generated.nix deleted file mode 100644 index 3876476623bc..000000000000 --- a/pkgs/top-level/python-packages-generated.nix +++ /dev/null @@ -1,5317 +0,0 @@ -{ pkgs, stdenv, fetchurl, python, self }: - -let -in -{ - -} // pkgs.lib.optionalAttrs (python.majorVersion == "2.7") { - - - "plone.uuid-1.0.3" = self.buildPythonPackage { - name = "plone.uuid-1.0.3"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/p/plone.uuid/plone.uuid-1.0.3.zip"; - md5 = "183fe2911a7d6c9f6b3103855e98ad8a"; - }; - doCheck = false; - buildInputs = [ pkgs.unzip ]; - propagatedBuildInputs = [ self.setuptools self."zope.browserpage-3.12.2" self."zope.interface-3.6.7" self."zope.lifecycleevent-3.6.2" self."zope.publisher-3.12.6" ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - UUIDs for content items - ''; - homepage = "http://plone.org"; - license = "BSD"; - }; - }; - - - "six-1.2.0" = self.buildPythonPackage { - name = "six-1.2.0"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/s/six/six-1.2.0.tar.gz"; - md5 = "2a5d1afc79912832ac78fd38e3d75d7e"; - }; - doCheck = false; - buildInputs = [ ]; - propagatedBuildInputs = [ ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - Python 2 and 3 compatibility utilities - ''; - homepage = "http://pypi.python.org/pypi/six/"; - license = "UNKNOWN"; - }; - }; - - - "Products.ZopeVersionControl-1.1.3" = self.buildPythonPackage { - name = "Products.ZopeVersionControl-1.1.3"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/P/Products.ZopeVersionControl/Products.ZopeVersionControl-1.1.3.zip"; - md5 = "238239102f3ac798ee4f4c53343a561f"; - }; - doCheck = false; - buildInputs = [ pkgs.unzip ]; - propagatedBuildInputs = [ self."Acquisition-2.13.8" self."DateTime-3.0.3" self.setuptools self."transaction-1.1.1" self."ZODB3-3.10.5" self."zope.interface-3.6.7" self."Zope2-2.13.22" ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - Zope Version Control - ''; - homepage = "http://pypi.python.org/pypi/Products.ZopeVersionControl"; - license = stdenv.lib.licenses.zpt20; - }; - }; - - - "Products.Archetypes-1.9.7" = self.buildPythonPackage { - name = "Products.Archetypes-1.9.7"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/P/Products.Archetypes/Products.Archetypes-1.9.7.zip"; - md5 = "35060c0ed8faf76c3c488fa642bb9715"; - }; - doCheck = false; - buildInputs = [ pkgs.unzip ]; - propagatedBuildInputs = [ self."Acquisition-2.13.8" self."DateTime-3.0.3" self."ExtensionClass-2.13.2" self."plone.app.folder-1.0.6" self."plone.folder-1.0.5" self."plone.uuid-1.0.3" self."Products.CMFCalendar-2.2.3" self."Products.CMFCore-2.2.7" self."Products.CMFDefault-2.2.4" self."Products.CMFFormController-3.0.3" self."Products.CMFQuickInstallerTool-3.0.6" self."Products.DCWorkflow-2.2.4" self."Products.GenericSetup-1.7.4" self."Products.Marshall-2.1.2" self."Products.MimetypesRegistry-2.0.5" self."Products.PlacelessTranslationService-2.0.4" self."Products.PortalTransforms-2.1.3" self."Products.statusmessages-4.0" self."Products.validation-2.0" self."Products.ZSQLMethods-2.13.4" self.setuptools self."transaction-1.1.1" self."ZODB3-3.10.5" self."zope.component__zcml-3.9.5" self."zope.contenttype-3.5.5" self."zope.datetime-3.4.1" self."zope.deferredimport-3.5.3" self."zope.event-3.5.2" self."zope.i18n__zcml-3.7.4" self."zope.i18nmessageid-3.5.3" self."zope.interface-3.6.7" self."zope.lifecycleevent-3.6.2" self."zope.publisher-3.12.6" self."zope.schema-4.2.2" self."zope.site-3.9.2" self."zope.tal-3.5.2" self."zope.viewlet-3.7.2" self."Zope2-2.13.22" ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - Archetypes is a developers framework for rapidly developing and deploying rich, full featured content types within the context of Zope/CMF and Plone. - ''; - homepage = "http://pypi.python.org/pypi/Products.Archetypes"; - license = "GPL"; - }; - }; - - - "cssselect-0.9.1" = self.buildPythonPackage { - name = "cssselect-0.9.1"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/c/cssselect/cssselect-0.9.1.tar.gz"; - md5 = "c74f45966277dc7a0f768b9b0f3522ac"; - }; - doCheck = false; - buildInputs = [ ]; - propagatedBuildInputs = [ ]; - installCommand = ''easy_install --always-unzip --prefix="$out" .''; - meta = { - description = '' - cssselect parses CSS3 Selectors and translates them to XPath 1.0 - ''; - homepage = "http://packages.python.org/cssselect/"; - license = "BSD"; - }; - }; - - - "Products.Marshall-2.1.2" = self.buildPythonPackage { - name = "Products.Marshall-2.1.2"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/P/Products.Marshall/Products.Marshall-2.1.2.zip"; - md5 = "bde4d7f75195c1ded8371554b04d2541"; - }; - doCheck = false; - buildInputs = [ pkgs.unzip ]; - propagatedBuildInputs = [ self."Acquisition-2.13.8" self."DateTime-3.0.3" self."ExtensionClass-2.13.2" self."plone.uuid-1.0.3" self."Products.CMFCore-2.2.7" self."Products.GenericSetup-1.7.4" self.setuptools self."transaction-1.1.1" self."zope.contenttype-3.5.5" self."zope.interface-3.6.7" self."Zope2-2.13.22" ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - Configurable Marshallers for Archetypes - ''; - homepage = "http://pypi.python.org/pypi/Products.Marshall"; - license = "GPL"; - }; - }; - - - "plone.folder-1.0.5" = self.buildPythonPackage { - name = "plone.folder-1.0.5"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/p/plone.folder/plone.folder-1.0.5.zip"; - md5 = "2722124a411e2d267b08d6f4d81e262c"; 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- src = fetchurl { - url = "https://pypi.python.org/packages/source/W/WebTest/WebTest-2.0.15.zip"; - md5 = "49314bdba23f4d0bd807facb2a6d3f90"; - }; - doCheck = true; - buildInputs = [ self."nose-1.3.3" self."unittest2-0.5.1" self."pyquery-1.2.8" self."WSGIProxy2-0.4.1" self."PasteDeploy-1.5.2" self."mock-1.0.1" self."coverage-3.7.1" pkgs.unzip ]; - propagatedBuildInputs = [ self."beautifulsoup4-4.3.2" self."six-1.6.1" self."waitress-0.8.9" self."WebOb-1.4" ]; - preConfigure = ''substituteInPlace setup.py --replace "nose<1.3.0" "nose"''; - installCommand = ''easy_install --always-unzip --prefix="$out" .''; - meta = { - description = '' - Helper to test WSGI applications - ''; - homepage = "http://webtest.pythonpaste.org/"; - license = stdenv.lib.licenses.mit; - }; - }; - - - "plone.app.linkintegrity-1.5.4" = self.buildPythonPackage { - name = "plone.app.linkintegrity-1.5.4"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/p/plone.app.linkintegrity/plone.app.linkintegrity-1.5.4.zip"; - md5 = "f82e73603ade6f588bc27f01c5aea404"; - }; - doCheck = false; - buildInputs = [ pkgs.unzip ]; - propagatedBuildInputs = [ self.setuptools ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - Manage link integrity in Plone. - ''; - homepage = "http://pypi.python.org/pypi/plone.app.linkintegrity"; - license = stdenv.lib.licenses.gpl2; - }; - }; - - - "zope.app.form-4.0.2" = self.buildPythonPackage { - name = "zope.app.form-4.0.2"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/z/zope.app.form/zope.app.form-4.0.2.tar.gz"; - md5 = "3d2b164d9d37a71490a024aaeb412e91"; - }; - doCheck = false; - buildInputs = [ ]; - propagatedBuildInputs = [ self.setuptools self."transaction-1.1.1" self."zope.browser-1.3" self."zope.browsermenu-3.9.1" self."zope.browserpage-3.12.2" self."zope.component__zcml-3.9.5" self."zope.configuration-3.7.4" self."zope.datetime-3.4.1" self."zope.exceptions-3.6.2" self."zope.formlib-4.0.6" self."zope.i18n__zcml-3.7.4" self."zope.interface-3.6.7" self."zope.proxy-3.6.1" self."zope.publisher-3.12.6" self."zope.schema-4.2.2" self."zope.security__untrustedpython-3.7.4" ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - The Original Zope 3 Form Framework - ''; - homepage = "http://pypi.python.org/pypi/zope.app.form"; - license = stdenv.lib.licenses.zpt21; - }; - }; - - - "five.localsitemanager-2.0.5" = self.buildPythonPackage { - name = "five.localsitemanager-2.0.5"; - src = fetchurl { - url = "https://pypi.python.org/packages/source/f/five.localsitemanager/five.localsitemanager-2.0.5.zip"; - md5 = "5e3a658e6068832bd802018ebc83f2d4"; - }; - doCheck = false; - buildInputs = [ pkgs.unzip ]; - propagatedBuildInputs = [ self."Acquisition-2.13.8" self.setuptools self."ZODB3-3.10.5" self."zope.component__zcml-3.9.5" self."zope.event-3.5.2" self."zope.interface-3.6.7" self."zope.lifecycleevent-3.6.2" self."zope.location-3.9.1" self."zope.site-3.9.2" self."zope.testing-3.9.7" self."Zope2-2.13.22" ]; - installCommand = ''easy_install --always-unzip --no-deps --prefix="$out" .''; - meta = { - description = '' - Local site manager implementation for Zope 2 - ''; - homepage = "http://pypi.python.org/pypi/five.localsitemanager"; - license = stdenv.lib.licenses.zpt21; - }; - }; - - -} diff --git a/pkgs/top-level/python-packages.json b/pkgs/top-level/python-packages.json deleted file mode 100644 index 8dbd010b9b69..000000000000 --- a/pkgs/top-level/python-packages.json +++ /dev/null @@ -1,150 +0,0 @@ -[ - { "name": "pyramid", - "buildInputs": [ "pkgs.libxml2", "pkgs.libxslt" ], - "override": { - "pyramid": { - "buildInputs": [ - "nose", - "WebTest", - "zope.component", - "zope.interface" - ] - }, - "cssselect": { - "doCheck": false - }, - "lxml": { - "buildInputs": [ "pkgs.libxml2", "pkgs.libxslt" ], - "doCheck": false - }, - "six": { - "doCheck": false - }, - "beautifulsoup4": { - "doCheck": false - }, - "zope.exceptions": { - "doCheck": false - }, - "zope.component": { - "doCheck": false - }, - "zope.schema": { - "doCheck": false - }, - "zope.testing": { - "buildInputs": [ "zope.location" ] - }, - "waitress": { - "doCheck": false - }, - "venusian": { - "buildInputs": [ "nose" ], - "doCheck": false - }, - "Mako": { - "buildInputs": [ "nose" ] - }, - "WebOb": { - "buildInputs": [ "nose" ], - "propagatedBuildInputs": [ "python.modules.ssl" ] - }, - "WebTest": { - "buildInputs": [ - "nose", - "unittest2", - "pyquery", - "WSGIProxy2", - "PasteDeploy", - "mock", - "coverage" - ] - }, - "mock": { - "buildInputs": [ "unittest2" ] - }, - "PasteDeploy": { - "buildInputs": [ "nose" ] - }, - "Chameleon": { - "buildInputs": [ "zope.event" ], - "doCheck": false - }, - "zope.interface": { - "buildInputs": [ "zope.event" ] - }, - "translationstring": { - "buildInputs": [ "nose" ] - }, - "repoze.lru": { - "buildInputs": [ "nose" ] - } - } - }, - { "name": "Plone", - "extends": "http://dist.plone.org/release/4.3.3/versions.cfg", - "doCheck": false, - "installCommand": "easy_install --always-unzip --no-deps --prefix=\"$out\" .", - "override": { - "Products.DCWorkflow": { - "propagatedBuildInputs": [ "eggtestinfo" ] - }, - "lxml": { - "buildInputs": [ "pkgs.libxml2", "pkgs.libxslt" ], - "doCheck": false - }, - "Products.CMFDefault": { - "propagatedBuildInputs": [ "eggtestinfo" ] - }, - "Products.CMFQuickInstallerTool": { - "propagatedBuildInputs": [ "eggtestinfo" ] - }, - "Products.CMFUid": { - "propagatedBuildInputs": [ "eggtestinfo" ] - }, - "Products.CMFActionIcons": { - "propagatedBuildInputs": [ "eggtestinfo" ] - }, - "Products.CMFCalendar": { - "propagatedBuildInputs": [ "eggtestinfo" ] - }, - "Pillow": { - "buildInputs": [ - "pkgs.freetype", - "pkgs.libjpeg", - "pkgs.zlib", - "pkgs.libtiff", - "pkgs.libwebp" - ], - "configurePhase": [ - "sed -i \"setup.py\" \\", - " -e 's|^FREETYPE_ROOT =.*$|FREETYPE_ROOT = _lib_include(\"${pkgs.freetype}\")|g ;", - " s|^JPEG_ROOT =.*$|JPEG_ROOT = _lib_include(\"${pkgs.libjpeg}\")|g ;", - " s|^ZLIB_ROOT =.*$|ZLIB_ROOT = _lib_include(\"${pkgs.zlib}\")|g ;", - " s|^LCMS_ROOT =.*$|LCMS_ROOT = _lib_include(\"${pkgs.libwebp}\")|g ;", - " s|^TIFF_ROOT =.*$|TIFF_ROOT = _lib_include(\"${pkgs.libtiff}\")|g ;'" - ] - } - } - }, - { "name": "plone.recipe.zope2instance", - "extends": "http://dist.plone.org/release/4.3.3/versions.cfg", - "doCheck": false - }, - { "name": "RelStorage", - "extends": "http://dist.plone.org/release/4.3.3/versions.cfg", - "doCheck": false - }, - { "name": "psycopg2", - "buildInputs": [ "pkgs.postgresql" ], - "doCheck": false - }, - { "name": "xlrd", - "doCheck": false - }, - { "name": "suds", - "doCheck": false - }, - { "name": "html2text" - } -] diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index c324ae1c00c7..de5afad6c478 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -32,12 +32,7 @@ let crypt = null; }; - pythonPackages = modules // import ./python-packages-generated.nix { - inherit pkgs python; - inherit (pkgs) stdenv fetchurl; - self = pythonPackages; - } -// { + pythonPackages = modules // { inherit python isPy26 isPy27 isPy33 isPy34 isPyPy isPy3k pythonName buildPythonPackage; @@ -522,17 +517,54 @@ let }; }; + funcsigs = buildPythonPackage rec { + name = "funcsigs-0.4"; + disabled = ! (isPy26 || isPy27 || isPy33 || isPyPy); + + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/f/funcsigs/${name}.tar.gz"; + md5 = "fb1d031f284233e09701f6db1281c2a5"; + }; + + buildInputs = with self; [ + unittest2 + ]; + + meta = with pkgs.stdenv.lib; { + description = "Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2+"; + homepage = "https://github.com/aliles/funcsigs"; + maintainers = with maintainers; [ garbas ]; + license = licenses.asl20; + }; + }; apscheduler = buildPythonPackage rec { name = "APScheduler-3.0.1"; - - propagatedBuildInputs = with self; [ futures tzlocal six pytest mock sqlalchemy9 ]; + disabled = !isPy27; src = pkgs.fetchurl { url = "https://pypi.python.org/packages/source/A/APScheduler/${name}.tar.gz"; - sha256 = "1dcyk58svhhd7flpq0fbyzcp0z3a1as4ddmdv1rxqvqng0sxhwaf"; + md5 = "7c3687b3dcd645fe9df48e34eb7a7592"; }; + buildInputs = with self; [ + pytest + sqlalchemy9 + tornado + twisted + mock + trollius + funcsigs + gevent + ]; + + propagatedBuildInputs = with self; [ + six + pytz + tzlocal + futures + ]; + meta = with pkgs.stdenv.lib; { description = "A Python library that lets you schedule your Python code to be executed"; homepage = http://pypi.python.org/pypi/APScheduler/; @@ -540,7 +572,6 @@ let }; }; - area53 = buildPythonPackage (rec { name = "Area53-0.94"; @@ -1037,7 +1068,12 @@ let sha256 = "f856ea2e9e2947abc1a6557625cc6b0e45228984f397a90c420b2f468dc4cb97"; }; doCheck = false; - buildInputs = with pkgs; [ liblapack blas ]; + buildInputs = with pkgs; [ openblasCompat ]; + preConfigure = '' + export CVXOPT_BLAS_LIB_DIR=${pkgs.openblasCompat}/lib + export CVXOPT_BLAS_LIB=openblas + export CVXOPT_LAPACK_LIB=openblas + ''; meta = { homepage = "http://cvxopt.org/"; description = "Python Software for Convex Optimization"; @@ -1269,6 +1305,7 @@ let homepage = http://pythonhosted.org/blinker/; description = "Fast, simple object-to-object and broadcast signaling"; license = licenses.mit; + maintainers = with maintainers; [ garbas ]; }; }; @@ -3373,6 +3410,26 @@ let }; }; + i3-py = buildPythonPackage rec { + version = "0.6.4"; + name = "i3-py-${version}"; + + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/i/i3-py/i3-py-${version}.tar.gz"; + sha256 = "1sgl438jrb4cdyl7hbc3ymwsf7y3zy09g1gh7ynilxpllp37jc8y"; + }; + + # no tests in tarball + doCheck = false; + + meta = { + description = "tools for i3 users and developers"; + homepage = "https://github.com/ziberna/i3-py"; + license = licenses.gpl3; + platforms = platforms.linux; + }; + }; + jsonpatch = buildPythonPackage rec { name = "jsonpatch-1.8"; @@ -3409,6 +3466,26 @@ let }; }; + jdcal = buildPythonPackage rec { + version = "1.0"; + name = "jdcal-${version}"; + + src = pkgs.fetchFromGitHub { + owner = "phn"; + repo = "jdcal"; + rev = "v${version}"; + sha256 = "0jjgrrylraqzk3n97hay4gj00ky6vlvkfaapfgqlbcxyq30j24vq"; + }; + + meta = { + description = "A module containing functions for converting between Julian dates and calendar dates"; + homepage = "https://github.com/phn/jdcal"; + license = licenses.bsd2; + maintainers = with maintainers; [ lihop ]; + platforms = platforms.all; + }; + }; + jsonwatch = buildPythonPackage rec { name = "jsonwatch-0.2.0"; @@ -4779,6 +4856,26 @@ let }; + django_pipeline = buildPythonPackage rec { + name = "django-pipeline-${version}"; + version = "1.5.1"; + + src = pkgs.fetchurl { + url = "http://pypi.python.org/packages/source/d/django-pipeline/${name}.tar.gz"; + md5 = "dff8a4abb2895ee5df335c3fb2775a02"; + sha256 = "1y49fa8jj7x9qjj5wzhns3zxwj0s73sggvkrv660cqw5qb7d8hha"; + }; + + propagatedBuildInputs = with self; [ django futures ]; + + meta = with stdenv.lib; { + description = "Pipeline is an asset packaging library for Django."; + homepage = https://github.com/cyberdelia/django-pipeline; + license = stdenv.lib.licenses.mit; + }; + }; + + djblets = buildPythonPackage rec { name = "Djblets-0.6.28"; @@ -4848,8 +4945,9 @@ let doCheck = false; meta = { - homepage = http://docutils.sourceforge.net/; description = "An open-source text processing system for processing plaintext documentation into useful formats, such as HTML or LaTeX"; + homepage = http://docutils.sourceforge.net/; + maintainers = with maintainers; [ garbas ]; }; }; @@ -5033,8 +5131,9 @@ let propagatedBuildInputs = with self; [ six pytz ]; meta = { - homepage = https://github.com/dmdm/feedgenerator-py3k.git; description = "Standalone version of django.utils.feedgenerator, compatible with Py3k"; + homepage = https://github.com/dmdm/feedgenerator-py3k.git; + maintainers = with maintainers; [ garbas ]; }; }); @@ -5509,18 +5608,18 @@ let }; futures = buildPythonPackage rec { - name = "futures-2.1.6"; - + name = "futures-3.0.2"; src = pkgs.fetchurl { - url = "https://pypi.python.org/packages/source/f/futures/futures-2.1.6.tar.gz"; - md5 = "cfab9ac3cd55d6c7ddd0546a9f22f453"; + url = "https://pypi.python.org/packages/source/f/futures/${name}.tar.gz"; + md5 = "42aaf1e4de48d6e871d77dc1f9d96d5a"; }; meta = with pkgs.stdenv.lib; { description = "Backport of the concurrent.futures package from Python 3.2"; - homepage = http://code.google.com/p/pythonfutures; + homepage = "https://github.com/agronholm/pythonfutures"; license = licenses.bsd2; + maintainers = with maintainers; [ garbas ]; }; }; @@ -5751,14 +5850,14 @@ let glances = buildPythonPackage rec { name = "glances-${version}"; - version = "2.3"; + version = "2.4.2"; disabled = isPyPy; src = pkgs.fetchFromGitHub { owner = "nicolargo"; repo = "glances"; rev = "v${version}"; - sha256 = "09x9g4wzfxfhpby3aa1fbhw3iqv1vyd6h526nrm9612ba5d0myh9"; + sha256 = "1ghx62z63yyf8wv4bcvfxwxs5mc7b4nrcss6lc1i5s0yjvzvyi6h"; }; doCheck = false; @@ -5889,12 +5988,12 @@ let gyp = buildPythonPackage rec { name = "gyp-${version}"; - version = "2015-05-15"; + version = "2015-06-11"; src = pkgs.fetchgit { url = "https://chromium.googlesource.com/external/gyp.git"; - rev = "9f594095c5b14f8bc518081a660e77890c294861"; - sha256 = "1xqi44alnw9c31jg2hz7flz5nabq003b4jyin12h3s9zl82y6vd5"; + rev = "fdc7b812f99e48c00e9a487bd56751bbeae07043"; + sha256 = "176sdxkva2irr1v645nn4q6rwc6grbb1wxj82n7x9hh09q4bxqcz"; }; patches = optionals pkgs.stdenv.isDarwin [ @@ -5910,28 +6009,6 @@ let }; }; - # Needed to build Chromium until #7402 is fixed. - gyp_svn1977 = pkgs.lowPrio (buildPythonPackage rec { - rev = "1977"; - name = "gyp-r${rev}"; - - src = pkgs.fetchsvn { - url = "http://gyp.googlecode.com/svn/trunk"; - inherit rev; - sha256 = "0vnr75yd3bidysiwl9lljvf1dv6v9m9xqdnx0hdgyl92w689n9j8"; - }; - - patches = optionals pkgs.stdenv.isDarwin [ - ../development/python-modules/gyp/no-darwin-cflags.patch - ]; - - meta = { - homepage = http://code.google.com/p/gyp; - license = licenses.bsd3; - description = "Generate Your Projects"; - }; - }); - guessit = buildPythonPackage rec { version = "0.9.4"; name = "guessit-${version}"; @@ -6396,7 +6473,7 @@ let sha256 = "2e24ac5d004db5714976a04ac0e80c6df6e47e98c354cb2c0d82f8879d4f8fdb"; }; - propagatedBuildInputs = with self; [ self.markupsafe ]; + propagatedBuildInputs = with self; [ markupsafe ]; meta = { homepage = http://jinja.pocoo.org/; @@ -6408,7 +6485,7 @@ let an optional sandboxed environment. ''; platforms = platforms.all; - maintainers = with maintainers; [ pierron ]; + maintainers = with maintainers; [ pierron garbas ]; }; }; @@ -6822,8 +6899,8 @@ let meta = { description = "Implements a XML/HTML/XHTML Markup safe string"; homepage = http://dev.pocoo.org; - license = "BSD"; - maintainers = with maintainers; [ iElectric ]; + license = licenses.bsd3; + maintainers = with maintainers; [ iElectric garbas ]; }; }; @@ -7841,7 +7918,7 @@ let numpy = let support = import ../development/python-modules/numpy-scipy-support.nix { inherit python; - atlas = pkgs.atlasWithLapack; + openblas = pkgs.openblasCompat; pkgName = "numpy"; }; in buildPythonPackage ( rec { @@ -7864,7 +7941,7 @@ let setupPyBuildFlags = ["--fcompiler='gnu95'"]; buildInputs = [ pkgs.gfortran self.nose ]; - propagatedBuildInputs = [ support.atlas ]; + propagatedBuildInputs = [ support.openblas ]; meta = { description = "Scientific tools for Python"; @@ -7907,8 +7984,13 @@ let sha256 = "1fp3d3z2grb1ls97smjkraazpxnvajda2d1g1378s6gzmda2jvjd"; }; - buildInputs = with self; [ pkgs.makeWrapper ]; - propagatedBuildInputs = with self; [ requests2 pkgs.rtmpdump pycrypto singledispatch futures ]; + buildInputs = [ pkgs.makeWrapper ]; + + propagatedBuildInputs = with self; [ pkgs.rtmpdump pycrypto requests2 ] + ++ optionals isPy26 [ singledispatch futures argparse ] + ++ optionals isPy27 [ singledispatch futures ] + ++ optionals isPy33 [ singledispatch ]; + postInstall = '' wrapProgram $out/bin/livestreamer --prefix PATH : ${pkgs.rtmpdump}/bin ''; @@ -8037,6 +8119,27 @@ let doCheck = false; }; + openpyxl = buildPythonPackage rec { + version = "2.2.4"; + name = "openpyxl-${version}"; + + src = pkgs.fetchhg { + url = "https://bitbucket.org/openpyxl/openpyxl"; + rev = "${version}"; + sha256 = "1g9imbg4sjfyv5sqg2s7h4svhdmbnvq16hvc1a8jpaqq8nc2vjj2"; + }; + + propagatedBuildInputs = with self; [ jdcal ]; + + meta = { + description = "A Python library to read/write Excel 2007 xlsx/xlsm files"; + homepage = "https://openpyxl.readthedocs.org"; + license = licenses.mit; + maintainers = with maintainers; [ lihop ]; + platforms = platforms.all; + }; + }; + # optfunc = buildPythonPackage ( rec { # name = "optfunc-git"; # @@ -8059,14 +8162,21 @@ let # }; # }); - ordereddict = if isPy26 then (buildPythonPackage { + ordereddict = buildPythonPackage rec { name = "ordereddict-1.1"; + disabled = !isPy26; + src = pkgs.fetchurl { - url = "http://pypi.python.org/packages/source/o/ordereddict/ordereddict-1.1.tar.gz"; + url = "http://pypi.python.org/packages/source/o/ordereddict/${name}.tar.gz"; md5 = "a0ed854ee442051b249bfad0f638bbec"; }; - doCheck = false; - }) else null; + + meta = { + description = "A drop-in substitute for Py2.7's new collections.OrderedDict that works in Python 2.4-2.6."; + license = licenses.bsd3; + maintainers = with maintainers; [ garbas ]; + }; + }; ply = buildPythonPackage (rec { name = "ply-3.4"; @@ -8388,33 +8498,46 @@ let pelican = buildPythonPackage rec { name = "pelican-${version}"; - version = "3.5.0"; + version = "3.6.0"; + disabled = isPy26; - src = pkgs.fetchurl { - url = "https://pypi.python.org/packages/source/p/pelican/${name}.tar.gz"; - sha256 = "0dl8i26sa20iijlg3z9gxn3p6f1d9v44b9742929xfaqwj4amvdp"; + src = pkgs.fetchFromGitHub { + owner = "getpelican"; + repo = "pelican"; + rev = version; + sha256 = "0a9r90d85rn2cvl6yyk6q5i5kwz9igfj8fdwi37zsx4ijhmn2b5j"; }; - preConfigure = '' - export LC_ALL="en_US.UTF-8" - ''; - - # Test data not provided - #buildInputs = [nose mock]; - doCheck = false; - - buildInputs = [ pkgs.glibcLocales ]; + buildInputs = with self; [ + pkgs.glibcLocales + pkgs.pandoc + pkgs.git + mock + nose + markdown + beautifulsoup4 + lxml + typogrify + ]; propagatedBuildInputs = with self; [ jinja2 pygments docutils pytz unidecode six dateutil feedgenerator blinker pillow beautifulsoup4 markupsafe ]; + postPatch= '' + sed -i -e "s|'git'|'${pkgs.git}/bin/git'|" pelican/tests/test_pelican.py + ''; + + preConfigure = '' + export LC_ALL="en_US.UTF-8" + ''; + meta = { - homepage = http://getpelican.com/; description = "A tool to generate a static blog from reStructuredText or Markdown input files"; + homepage = "http://getpelican.com/"; license = licenses.agpl3; - maintainers = with maintainers; [ offline prikhi ]; + maintainers = with maintainers; [ offline prikhi garbas ]; }; }; @@ -8822,11 +8945,11 @@ let prompt_toolkit = buildPythonPackage rec { name = "prompt_toolkit-${version}"; - version = "0.39"; + version = "0.40"; src = pkgs.fetchurl { + sha256 = "0zyp2zpbckpdhapijvg7jwli71ilhp02awn99ly70q3l1f44m9dj"; url = "https://pypi.python.org/packages/source/p/prompt_toolkit/${name}.tar.gz"; - sha256 = "1046fhgqd1171n8xyzcxwzcxgkcwa77r08g7iih8k5x7z59l94lb"; }; buildInputs = with self; [ jedi ipython pygments ]; @@ -9589,7 +9712,7 @@ let homepage = http://pygments.org/; description = "A generic syntax highlighter"; license = licenses.bsd2; - maintainers = with maintainers; [ nckx ]; + maintainers = with maintainers; [ nckx garbas ]; }; }; @@ -10548,6 +10671,24 @@ let }; }; + pywinrm = buildPythonPackage (rec { + name = "pywinrm"; + + src = pkgs.fetchgit { + url = https://github.com/diyan/pywinrm.git; + rev = "c9ce62d500007561ab31a8d0a5d417e779fb69d9"; + sha256 = "0n0qlcgin2g5lpby07qbdlnpq5v2qc2yns9zc4zm5prwh2mhs5za"; + }; + + propagatedBuildInputs = with self; [ xmltodict isodate ]; + + meta = { + homepage = "http://github.com/diyan/pywinrm/"; + description = "Python library for Windows Remote Management"; + license = licenses.mit; + }; + }); + pyxattr = buildPythonPackage (rec { name = "pyxattr-0.5.1"; @@ -10695,12 +10836,12 @@ let }; requests_toolbelt = buildPythonPackage rec { - version = "0.3.0"; + version = "0.4.0"; name = "requests-toolbelt-${version}"; src = pkgs.fetchurl { url = "https://github.com/sigmavirus24/requests-toolbelt/archive/${version}.tar.gz"; - sha256 = "177lqpm2czx81pjg0zfs1dkbbmcn5yf1y5qxj23x6y5d28518qwl"; + sha256 = "0zvfz4c9lqiwh2qh51rba6ckpjl3pbp9fcm0ri58qhcjd8mh8k34"; }; propagatedBuildInputs = with self; [ requests2 ]; @@ -10708,7 +10849,7 @@ let meta = { description = "A toolbelt of useful classes and functions to be used with python-requests"; homepage = http://toolbelt.rtfd.org; - maintainers = with maintainers; [ matthiasbeyer ]; + maintainers = with maintainers; [ matthiasbeyer jgeerds ]; }; }; @@ -11301,7 +11442,7 @@ let scipy = let support = import ../development/python-modules/numpy-scipy-support.nix { inherit python; - atlas = pkgs.atlasWithLapack; + openblas = pkgs.openblasCompat; pkgName = "numpy"; }; in buildPythonPackage rec { @@ -11339,15 +11480,14 @@ let }; buildInputs = with self; [ nose pillow pkgs.gfortran pkgs.glibcLocales ]; - propagatedBuildInputs = with self; [ numpy scipy pkgs.atlas ]; + propagatedBuildInputs = with self; [ numpy scipy pkgs.openblas ]; buildPhase = '' - export ATLAS=${pkgs.atlas} ${self.python.executable} setup.py build_ext -i --fcompiler='gnu95' ''; checkPhase = '' - LC_ALL="en_US.UTF-8" HOME=$TMPDIR ATLAS="" nosetests + LC_ALL="en_US.UTF-8" HOME=$TMPDIR OMP_NUM_THREADS=1 nosetests ''; meta = { @@ -11406,6 +11546,29 @@ let ''; }; + setuptools_scm = buildPythonPackage rec { + name = "setuptools_scm-${version}"; + version = "1.5.4"; + + src = pkgs.fetchurl { + url = "https://bitbucket.org/pypa/setuptools_scm/get/v${version}.tar.bz2"; + sha256 = "0vd6xsl7r0vn5gpw87d31s195j33sqw5c26zdagimy9qzydgq6y6"; + }; + + buildInputs = with self; [ pip ]; + + preBuild = '' + ${python.interpreter} setup.py egg_info + ''; + + meta = with stdenv.lib; { + homepage = https://bitbucket.org/pypa/setuptools_scm/; + description = "Handles managing your python package versions in scm metadata"; + license = licenses.mit; + maintainers = with maintainers; [ jgeerds ]; + }; + }; + setuptoolsDarcs = buildPythonPackage { name = "setuptools-darcs-1.2.9"; @@ -13492,6 +13655,36 @@ let }; }); + xmltodict = buildPythonPackage (rec { + name = "xmltodict-0.9.2"; + + src = pkgs.fetchurl { + url = "http://pypi.python.org/packages/source/x/xmltodict/${name}.tar.gz"; + sha256 = "00crqnjh1kbvcgfnn3b8c7vq30lf4ykkxp1xf3pf7mswr5l1wp97"; + }; + + buildInputs = with self; [ coverage nose ]; + + meta = { + description = "Makes working with XML feel like you are working with JSON"; + homepage = https://github.com/martinblech/xmltodict; + license = licenses.mit; + }; + }); + + youtube-dl = callPackage ../tools/misc/youtube-dl { + # Release versions don't need pandoc because the formatted man page + # is included in the tarball. + pandoc = null; + }; + + youtube-dl-light = callPackage ../tools/misc/youtube-dl { + # Release versions don't need pandoc because the formatted man page + # is included in the tarball. + ffmpeg = null; + pandoc = null; + }; + zbase32 = buildPythonPackage (rec { name = "zbase32-1.1.2"; @@ -14098,7 +14291,7 @@ let md5 = "6c73c5b668a67fdc116a25b884058ed9"; }; - doCheck = !(python.isPypy or false); + doCheck = !isPyPy; propagatedBuildInputs = with self; [ zope_interface zope_exceptions zope_location ]; @@ -15564,7 +15757,7 @@ let sha256 = "6380eb38d0b5770d7e50813c8a48ff7c373b2187b4220339c1adce803df01c59"; }; - buildInputs = with self; [ nose decorator ]; + propagatedBuildInputs = with self; [ nose decorator ]; meta = { homepage = "https://networkx.github.io/"; @@ -15718,4 +15911,137 @@ let }; }; + trollius = buildPythonPackage rec { + version = "1.0.4"; + name = "trollius-${version}"; + disabled = isPy34; + + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/t/trollius/${name}.tar.gz"; + md5 = "3631a464d49d0cbfd30ab2918ef2b783"; + }; + + buildInputs = with self; [ mock ] + ++ optional isPy26 unittest2; + + propagatedBuildInputs = with self; [] + ++ optional isPy26 ordereddict + ++ optional (isPy26 || isPy27 || isPyPy) futures; + + # Some of the tests fail on darwin with `error: AF_UNIX path too long' + # because of the *long* path names for sockets + patchPhase = optionalString stdenv.isDarwin '' + sed -i -e "s|test_create_ssl_unix_connection|skip_test_create_ssl_unix_connection|" tests/test_events.py + sed -i -e "s|test_create_unix_connection|skip_test_create_unix_connection|" tests/test_events.py + sed -i -e "s|test_create_unix_connection|skip_test_create_unix_connection|" tests/test_events.py + sed -i -e "s|test_create_unix_connection|skip_test_create_unix_connection|" tests/test_events.py + sed -i -e "s|test_create_unix_server_existing_path_nonsock|skip_test_create_unix_server_existing_path_nonsock|" tests/test_unix_events.py + sed -i -e "s|test_create_unix_server_existing_path_sock|skip_test_create_unix_server_existing_path_sock|" tests/test_unix_events.py + sed -i -e "s|test_create_unix_server_ssl_verified|skip_test_create_unix_server_ssl_verified|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl_verified|skip_test_create_unix_server_ssl_verified|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl_verified|skip_test_create_unix_server_ssl_verified|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl_verify_failed|skip_test_create_unix_server_ssl_verify_failed|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl_verify_failed|skip_test_create_unix_server_ssl_verify_failed|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl_verify_failed|skip_test_create_unix_server_ssl_verify_failed|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl|skip_test_create_unix_server_ssl|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl|skip_test_create_unix_server_ssl|" tests/test_events.py + sed -i -e "s|test_create_unix_server_ssl|skip_test_create_unix_server_ssl|" tests/test_events.py + sed -i -e "s|test_create_unix_server|skip_test_create_unix_server|" tests/test_events.py + sed -i -e "s|test_create_unix_server|skip_test_create_unix_server|" tests/test_events.py + sed -i -e "s|test_create_unix_server|skip_test_create_unix_server|" tests/test_events.py + sed -i -e "s|test_open_unix_connection_error|skip_test_open_unix_connection_error|" tests/test_streams.py + sed -i -e "s|test_open_unix_connection_no_loop_ssl|skip_test_open_unix_connection_no_loop_ssl|" tests/test_streams.py + sed -i -e "s|test_open_unix_connection|skip_test_open_unix_connection|" tests/test_streams.py + sed -i -e "s|test_start_unix_server|skip_test_start_unix_server|" tests/test_streams.py + sed -i -e "s|test_unix_sock_client_ops|skip_test_unix_sock_client_ops|" tests/test_events.py + sed -i -e "s|test_unix_sock_client_ops|skip_test_unix_sock_client_ops|" tests/test_events.py + sed -i -e "s|test_unix_sock_client_ops|skip_test_unix_sock_client_ops|" tests/test_events.py + '' + optionalString isPy26 '' + sed -i -e "s|test_env_var_debug|skip_test_env_var_debug|" tests/test_tasks.py + ''; + + meta = { + description = "Port of the Tulip project (asyncio module, PEP 3156) on Python 2"; + homepage = "https://bitbucket.org/enovance/trollius"; + license = licenses.asl20; + maintainers = with maintainers; [ garbas ]; + }; + }; + + neovim = buildPythonPackage rec { + version = "0.0.36"; + name = "neovim-${version}"; + + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/n/neovim/${name}.tar.gz"; + md5 = "8cdad23402e29c7c5a1e85770e976edf"; + }; + + propagatedBuildInputs = with self; [ msgpack ] + ++ optional (!isPyPy) greenlet + ++ optional (!isPy34) trollius; + + meta = { + description = "Python client for Neovim"; + homepage = "https://github.com/neovim/python-client"; + license = licenses.asl20; + maintainers = with maintainers; [ garbas ]; + }; + }; + + ghp-import = buildPythonPackage rec { + version = "0.4.1"; + name = "ghp-import-${version}"; + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/g/ghp-import/${name}.tar.gz"; + md5 = "99e018372990c03ab355aa62c34965c5"; + }; + disabled = isPyPy; + buildInputs = [ pkgs.glibcLocales ]; + preConfigure = '' + export LC_ALL="en_US.UTF-8" + ''; + meta = { + description = "Copy your docs directly to the gh-pages branch."; + homepage = "http://github.com/davisp/ghp-import"; + license = "Tumbolia Public License"; + maintainers = with maintainers; [ garbas ]; + }; + }; + + typogrify = buildPythonPackage rec { + name = "typogrify-2.0.7"; + src = pkgs.fetchurl { + url = "https://pypi.python.org/packages/source/t/typogrify/${name}.tar.gz"; + md5 = "63f38f80531996f187d2894cc497ba08"; + }; + disabled = isPyPy; + propagatedBuildInputs = with self; [ smartypants ]; + meta = { + description = "Filters to enhance web typography, including support for Django & Jinja templates"; + homepage = "https://github.com/mintchaos/typogrify"; + license = licenses.bsd3; + maintainers = with maintainers; [ garbas ]; + }; + }; + + smartypants = buildPythonPackage rec { + version = "1.8.6"; + name = "smartypants-${version}"; + src = pkgs.fetchhg { + url = "https://bitbucket.org/livibetter/smartypants.py"; + rev = "v${version}"; + sha256 = "1cmzz44d2hm6y8jj2xcq1wfr26760gi7iq92ha8xbhb1axzd7nq6"; + }; + disabled = isPyPy; + buildInputs = with self; [ ]; #docutils pygments ]; + meta = { + description = "Python with the SmartyPants"; + homepage = "https://bitbucket.org/livibetter/smartypants.py"; + license = licenses.bsd3; + maintainers = with maintainers; [ garbas ]; + }; + }; + + }; in pythonPackages diff --git a/pkgs/top-level/rust-packages.nix b/pkgs/top-level/rust-packages.nix index 0de95d59c8e4..fe723a038e27 100644 --- a/pkgs/top-level/rust-packages.nix +++ b/pkgs/top-level/rust-packages.nix @@ -7,15 +7,15 @@ { runCommand, fetchFromGitHub, git }: let - version = "2015-05-19"; - rev = "6280837d21e5a241d961daf968f5379e6e2e392f"; + version = "2015-06-12"; + rev = "020d1f3344ed8e7bd8fa740372bb7f03675fa708"; src = fetchFromGitHub { inherit rev; owner = "rust-lang"; repo = "crates.io-index"; - sha256 = "1y5zhpd9l0zsknjnhk1ris45y5jka6d6fklzwwhss39h48vymf91"; + sha256 = "0vkr0k1ga0jskvl8ss7m5m66b4wwi7ibjj5qw0x0khcg1b5skkq6"; }; in |