Merge branch 'master' into staging-next

There's been some large rebuild on master.
I don't really have time ATM to find what it was.

96 files changed, 2280 insertions, 2445 deletions

diff --git a/pkgs/applications/audio/ams-lv2/default.nix b/pkgs/applications/audio/ams-lv2/default.nix
index bc72c3e13144..7858631f7973 100644
--- a/pkgs/applications/audio/ams-lv2/default.nix
+++ b/pkgs/applications/audio/ams-lv2/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, cairo, fftw, gtkmm2, lv2, lvtk, pkgconfig, python }:
+{ stdenv, fetchFromGitHub, cairo, fftw, gtkmm2, lv2, lvtk, pkgconfig, python3 }:
 
 stdenv.mkDerivation  rec {
   name = "ams-lv2-${version}";
@@ -12,13 +12,13 @@ stdenv.mkDerivation  rec {
   };
 
   nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ cairo fftw gtkmm2 lv2 lvtk python ];
+  buildInputs = [ cairo fftw gtkmm2 lv2 lvtk ];
 
-  configurePhase = "python waf configure --prefix=$out";
+  configurePhase = "${python3.interpreter} waf configure --prefix=$out";
 
-  buildPhase = "python waf";
+  buildPhase = "${python3.interpreter} waf";
 
-  installPhase = "python waf install";
+  installPhase = "${python3.interpreter} waf install";
 
   meta = with stdenv.lib; {
     description = "An LV2 port of the internal modules found in Alsa Modular Synth";
diff --git a/pkgs/applications/audio/cadence/default.nix b/pkgs/applications/audio/cadence/default.nix
new file mode 100644
index 000000000000..87dbb3109958
--- /dev/null
+++ b/pkgs/applications/audio/cadence/default.nix
@@ -0,0 +1,65 @@
+{ stdenv
+, fetchurl
+, pkgconfig
+, qtbase
+, makeWrapper
+, jack2Full
+, python3Packages
+, a2jmidid
+}:
+
+ stdenv.mkDerivation rec {
+  version = "0.9.0";
+  name = "cadence";
+
+  src = fetchurl {
+    url = "https://github.com/falkTX/Cadence/archive/v${version}.tar.gz";
+    sha256 = "07z1mnb0bmldb3i31bgw816pnvlvr9gawr51rpx3mhixg5wpiqzb";
+  };
+
+  buildInputs = [
+    makeWrapper
+    pkgconfig
+    qtbase
+  ];
+
+  apps = [
+    "cadence"
+    "cadence-jacksettings"
+    "cadence-pulse2loopback"
+    "claudia"
+    "cadence-aloop-daemon"
+    "cadence-logs"
+    "cadence-render"
+    "catarina"
+    "claudia-launcher"
+    "cadence-pulse2jack"
+    "cadence-session-start"
+    "catia"
+  ];
+
+  makeFlags = ''
+    PREFIX=""
+    DESTDIR=$(out)
+  '';
+
+  propagatedBuildInputs = with python3Packages; [ pyqt5 ];
+
+  postInstall = ''
+    # replace with our own wrappers.
+    for app in $apps; do
+      rm $out/bin/$app
+      makeWrapper ${python3Packages.python.interpreter} $out/bin/$app \
+        --set PYTHONPATH "$PYTHONPATH:$out/share/cadence" \
+        --add-flags "-O $out/share/cadence/src/$app.py"
+    done
+  '';
+
+  meta = {
+    homepage = https://github.com/falkTX/Cadence/;
+    description = "Collection of tools useful for audio production";
+    license = stdenv.lib.licenses.mit;
+    maintainers = with stdenv.lib.maintainers; [ genesis ];
+    platforms = stdenv.lib.platforms.linux;
+  };
+}
diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix
index b8495465db55..04bdff3c8135 100644
--- a/pkgs/applications/audio/spotify/default.nix
+++ b/pkgs/applications/audio/spotify/default.nix
@@ -1,13 +1,18 @@
-{ fetchurl, stdenv, dpkg, xorg, alsaLib, makeWrapper, openssl, freetype
+{ fetchurl, stdenv, squashfsTools, xorg, alsaLib, makeWrapper, openssl, freetype
 , glib, pango, cairo, atk, gdk_pixbuf, gtk2, cups, nspr, nss, libpng
 , libgcrypt, systemd, fontconfig, dbus, expat, ffmpeg_0_10, curl, zlib, gnome3 }:
 
 let
-  # Please update the stable branch!
-  # Latest version number can be found at:
-  # http://repository-origin.spotify.com/pool/non-free/s/spotify-client/
-  # Be careful not to pick the testing version.
-  version = "1.0.80.480.g51b03ac3-13";
+  # "rev" decides what is actually being downloaded
+  version = "1.0.80.474.gef6b503e-7";
+  # To get the latest stable revision:
+  # curl -H 'X-Ubuntu-Series: 16' 'https://api.snapcraft.io/api/v1/snaps/details/spotify?channel=stable' | jq '.download_url,.version,.last_updated'
+  # To get general information:
+  # curl -H 'Snap-Device-Series: 16' 'https://api.snapcraft.io/v2/snaps/info/spotify' | jq '.'
+  # More exapmles of api usage:
+  # https://github.com/canonical-websites/snapcraft.io/blob/master/webapp/publisher/snaps/views.py
+  rev = "16";
+
 
   deps = [
     alsaLib
@@ -49,12 +54,20 @@ in
 stdenv.mkDerivation {
   name = "spotify-${version}";
 
+  # fetch from snapcraft instead of the debian repository most repos fetch from.
+  # That is a bit more cumbersome. But the debian repository only keeps the last
+  # two versions, while snapcraft should provide versions indefinately:
+  # https://forum.snapcraft.io/t/how-can-a-developer-remove-her-his-app-from-snap-store/512
+
+  # This is the next-best thing, since we're not allowed to re-distribute
+  # spotify ourselves:
+  # https://community.spotify.com/t5/Desktop-Linux/Redistribute-Spotify-on-Linux-Distributions/td-p/1695334
   src = fetchurl {
-    url = "https://repository-origin.spotify.com/pool/non-free/s/spotify-client/spotify-client_${version}_amd64.deb";
-    sha256 = "e32f4816ae79dbfa0c14086e76df3bc83d526402aac1dbba534127fc00fe50ea";
+    url = "https://api.snapcraft.io/api/v1/snaps/download/pOBIoZ2LrCB3rDohMxoYGnbN14EHOgD7_${rev}.snap";
+    sha512 = "45b7ab574b30fb368e0b6f4dd60addbfd1ddc02173b4f98b31c524eed49073432352a361e75959ce8e2f752231e93c79ca1b538c4bd295c935d1e2e0585d147f";
   };
 
-  buildInputs = [ dpkg makeWrapper ];
+  buildInputs = [ squashfsTools makeWrapper ];
 
   doConfigure = false;
   doBuild = false;
@@ -63,7 +76,23 @@ stdenv.mkDerivation {
 
   unpackPhase = ''
     runHook preUnpack
-    dpkg-deb -x $src .
+    unsquashfs "$src" '/usr/share/spotify' '/usr/bin/spotify' '/meta/snap.yaml'
+    cd squashfs-root
+    if ! grep -q 'grade: stable' meta/snap.yaml; then
+      # Unfortunately this check is not reliable: At the moment (2018-07-26) the
+      # latest version in the "edge" channel is also marked as stable.
+      echo "The snap package is marked as unstable:"
+      grep 'grade: ' meta/snap.yaml
+      echo "You probably chose the wrong revision."
+      exit 1
+    fi
+    if ! grep -q '${version}' meta/snap.yaml; then
+      echo "Package version differs from version found in snap metadata:"
+      grep 'version: ' meta/snap.yaml
+      echo "While the nix package specifies: ${version}."
+      echo "You probably chose the wrong revision or forgot to update the nix version."
+      exit 1
+    fi
     runHook postUnpack
   '';
 
@@ -75,6 +104,8 @@ stdenv.mkDerivation {
       mkdir -p $libdir
       mv ./usr/* $out/
 
+      cp meta/snap.yaml $out
+
       # Work around Spotify referring to a specific minor version of
       # OpenSSL.
 
diff --git a/pkgs/applications/audio/spotify/update.sh b/pkgs/applications/audio/spotify/update.sh
new file mode 100644
index 000000000000..114245f6d46c
--- /dev/null
+++ b/pkgs/applications/audio/spotify/update.sh
@@ -0,0 +1,49 @@
+channel="stable" # stable/candidate/edge
+nixpkgs="$(git rev-parse --show-toplevel)"
+spotify_nix="$nixpkgs/pkgs/applications/audio/spotify/default.nix"
+
+
+
+# create bash array from snap info
+snap_info=($(
+	curl -H 'X-Ubuntu-Series: 16' \
+		"https://api.snapcraft.io/api/v1/snaps/details/spotify?channel=$channel" \
+	| jq --raw-output \
+		'.revision,.download_sha512,.version,.last_updated'
+))
+
+revision="${snap_info[0]}"
+sha512="${snap_info[1]}"
+version="${snap_info[2]}"
+last_updated="${snap_info[3]}"
+
+# find the last commited version
+version_pre=$(
+	git  grep 'version\s*=' HEAD "$spotify_nix" \
+	| sed -Ene 's/.*"(.*)".*/\1/p'
+)
+
+if [[ "$version_pre" = "$version" ]]; then
+	echo "Spotify is already up ot date"
+	exit 0
+fi
+
+echo "Updating from ${version_pre} to ${version}, released on ${last_updated}"
+
+# search-andreplace revision, hash and version
+sed --regexp-extended \
+	-e 's/rev\s*=\s*"[0-9]+"\s*;/rev = "'"${revision}"'";/' \
+	-e 's/sha512\s*=\s*".{128}"\s*;/sha512 = "'"${sha512}"'";/' \
+	-e 's/version\s*=\s*".*"\s*;/version = "'"${version}"'";/' \
+	-i "$spotify_nix" 
+
+if ! nix-build -A spotify "$nixpkgs"; then
+	echo "The updated spotify failed to build."
+	exit 1
+fi
+
+git add "$spotify_nix"
+# show diff for review
+git diff HEAD
+# prepare commit message, but allow edit
+git commit --edit --message "spotify: $version_pre -> $version"
diff --git a/pkgs/applications/editors/atom/default.nix b/pkgs/applications/editors/atom/default.nix
index 83f0f1e82220..bc3f8baf5108 100644
--- a/pkgs/applications/editors/atom/default.nix
+++ b/pkgs/applications/editors/atom/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, pkgs, fetchurl, makeWrapper, gvfs, atomEnv}:
+{ stdenv, pkgs, fetchurl, makeWrapper, wrapGAppsHook, gvfs, gtk3, atomEnv }:
 
 let
   common = pname: {version, sha256, beta ? null}:
@@ -14,7 +14,19 @@ let
       inherit sha256;
     };
 
-    nativeBuildInputs = [ makeWrapper ];
+    nativeBuildInputs = [
+      wrapGAppsHook  # Fix error: GLib-GIO-ERROR **: No GSettings schemas are installed on the system
+    ];
+
+    buildInputs = [
+      gtk3  # Fix error: GLib-GIO-ERROR **: Settings schema 'org.gtk.Settings.FileChooser' is not installed
+    ];
+
+    preFixup = ''
+      gappsWrapperArgs+=(
+        --prefix "PATH" : "${gvfs}/bin" \
+      )
+    '';
 
     buildCommand = ''
       mkdir -p $out/usr/
@@ -25,9 +37,6 @@ let
       rm -r $out/share/lintian
       rm -r $out/usr/
       sed -i "s/${pname})/.${pname}-wrapped)/" $out/bin/${pname}
-      # sed -i "s/'${pname}'/'.${pname}-wrapped'/" $out/bin/${pname}
-      wrapProgram $out/bin/${pname} \
-        --prefix "PATH" : "${gvfs}/bin"
 
       fixupPhase
 
diff --git a/pkgs/applications/graphics/renderdoc/default.nix b/pkgs/applications/graphics/renderdoc/default.nix
index 9a21d457a83f..99e250e9e4d7 100644
--- a/pkgs/applications/graphics/renderdoc/default.nix
+++ b/pkgs/applications/graphics/renderdoc/default.nix
@@ -12,14 +12,14 @@ let
   };
 in
 stdenv.mkDerivation rec {
-  version = "1.0";
+  version = "1.1";
   name = "renderdoc-${version}";
 
   src = fetchFromGitHub {
     owner = "baldurk";
     repo = "renderdoc";
     rev = "v${version}";
-    sha256 = "0l7pjxfrly4llryjnwk42dzx65n78wc98h56qm4yh04ja8fdbx2y";
+    sha256 = "0kb9m1dm0mnglqyh1srvl0f1bgjghxzbqarn0xfqw49wphqwhmcd";
   };
 
   buildInputs = [
diff --git a/pkgs/applications/misc/antfs-cli/default.nix b/pkgs/applications/misc/antfs-cli/default.nix
index 30b8a435f906..f21438dfcec5 100644
--- a/pkgs/applications/misc/antfs-cli/default.nix
+++ b/pkgs/applications/misc/antfs-cli/default.nix
@@ -1,7 +1,8 @@
-{ stdenv, fetchFromGitHub, pythonPackages }:
+{ stdenv, fetchFromGitHub, python3Packages }:
 
-pythonPackages.buildPythonApplication rec {
-  name = "antfs-cli-unstable-2017-02-11";
+python3Packages.buildPythonApplication rec {
+  pname = "antfs-cli";
+  version = "unstable-2017-02-11";
 
   meta = with stdenv.lib; {
     homepage = https://github.com/Tigge/antfs-cli;
@@ -17,5 +18,5 @@ pythonPackages.buildPythonApplication rec {
     sha256 = "0v8y64kldfbs809j1g9d75dd1vxq7mfxnp4b45pz8anpxhjf64fy";
   };
 
-  propagatedBuildInputs = [ pythonPackages.openant ];
+  propagatedBuildInputs = [ python3Packages.openant ];
 }
diff --git a/pkgs/applications/misc/gutenberg/default.nix b/pkgs/applications/misc/gutenberg/default.nix
index 8ab840221815..186475e2cd59 100644
--- a/pkgs/applications/misc/gutenberg/default.nix
+++ b/pkgs/applications/misc/gutenberg/default.nix
@@ -1,19 +1,19 @@
-{ stdenv, fetchFromGitHub, rustPlatform, cmake, CoreServices, cf-private }:
+{ stdenv, fetchFromGitHub, rustPlatform, cmake, pkgconfig, openssl, CoreServices, cf-private }:
 
 rustPlatform.buildRustPackage rec {
   name = "gutenberg-${version}";
-  version = "0.3.4";
+  version = "0.4.0";
 
   src = fetchFromGitHub {
     owner = "Keats";
     repo = "gutenberg";
     rev = "v${version}";
-    sha256 = "1v26q1m3bx7mdmmwgd6p601ncf13rr4rrx9s06fiy8vnd0ar1vlf";
+    sha256 = "1i2jcyq6afswxyjifhl5irv84licsad7c83yiy17454mplvrmyg2";
   };
 
-  cargoSha256 = "0cdy0wvibkpnmlqwxvn02a2k2vqy6zdqzflj2dh6g1cjbz1j8qh5";
+  cargoSha256 = "0hzxwvb5m8mvpfxys4ikkaag6khflh5bfglmay11wf6ayighv834";
 
-  nativeBuildInputs = [ cmake ];
+  nativeBuildInputs = [ cmake pkgconfig openssl ];
   buildInputs = stdenv.lib.optionals stdenv.isDarwin [ CoreServices cf-private ];
 
   postInstall = ''
diff --git a/pkgs/applications/misc/rtl_433/default.nix b/pkgs/applications/misc/rtl_433/default.nix
index 819c6c9391a9..7097dda35740 100644
--- a/pkgs/applications/misc/rtl_433/default.nix
+++ b/pkgs/applications/misc/rtl_433/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, libusb1, rtl-sdr }:
 stdenv.mkDerivation rec {
 
-  version = "2018-02-23";
+  version = "18.05";
   name = "rtl_433-${version}";
 
   src = fetchFromGitHub {
     owner = "merbanan";
     repo = "rtl_433";
-    rev = "51d275c";
-    sha256 = "1j443wmws5xgc18s47bvw3pqljk747izypz52rmlrvs16v96cg2g";
+    rev = "18.05";
+    sha256 = "0vfhnjyrx6w1m8g1hww5vdz4zgdlhcaps9g0397mxlki4sm77wpc";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix
index f217d853f0b9..0ded6ca4c946 100644
--- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix
+++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix
@@ -1,995 +1,995 @@
 {
-  version = "62.0b10";
+  version = "62.0b14";
   sources = [
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/ach/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/ach/firefox-62.0b14.tar.bz2";
       locale = "ach";
       arch = "linux-x86_64";
-      sha512 = "141e5f280b13c1440012f6b796cc361e3b5a29bd3301a18ee13ca4b860e21b8c5ff8e6640cd2c57c577d4f4ba3922bd89d96dcd9dcde8f7090238d663604461c";
+      sha512 = "b2f8ed7231fd1e3ed6530a6458c4831c636b21011e532d90b5b72116d1537b569ea08340e83ace86ffc2d4fbc15ea706b6fd989b265d8da74f43effb86b66192";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/af/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/af/firefox-62.0b14.tar.bz2";
       locale = "af";
       arch = "linux-x86_64";
-      sha512 = "dec1fc688e936e24e390436d881eb2adebede9eede6ec5b15c7732413d7eaf545d5f93e5515f4e216aea8ee26d5ada2f02ab8f45fe045669659089839a3d2de4";
+      sha512 = "fc3d6e21f1650e107a2974107a96e1a3f0d338a3fb11a4550aee4147f4ccebc055497b02e30658cd8e34d2971a50b27d645bfdc497b7534af3680e6b2d025281";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/an/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/an/firefox-62.0b14.tar.bz2";
       locale = "an";
       arch = "linux-x86_64";
-      sha512 = "3c25a7ca65184198ae3618047fc9f7592164367926492da6839e50ef2f72866bade1f44e9991fa817503b1a6b02a5d7400339ba330018e21f6fe863f6b7f389b";
+      sha512 = "2fb2c2acd46e9405928ae90125edf41c59b30cb786a0273732a3529e9ef23dd7d179c832a68937acf05a602578c8c568ef9aa0fd535f77cedfae09b611292258";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/ar/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/ar/firefox-62.0b14.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "7d7edb00be607d01ed2e4dd50027b2839e4abeb26a89b4d85a2581545c8cd43002ec116e2073ffeaaf98b6c76fe185ed836e49aff2a2bab6f2e486dad55bf5da";
+      sha512 = "841a0eb8feb42a09bfd2c4145f9742533bbc7de3b0a79271be43a30bd3933f03f8d2ea0bb381937a5963ce23417ebfd50018a14002672bd403f4d86a41e107b7";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/as/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/as/firefox-62.0b14.tar.bz2";
       locale = "as";
       arch = "linux-x86_64";
-      sha512 = "0a8d24f7c1b67b97d511f545a108dcacad9a1c1ec5004a1f1f6571551c52c14e9f98b341a61d4a13e6e26490a3c74fcb1608ab9dbb260d5f1e4d421fc71bfab9";
+      sha512 = "9cbd161fa8cd987387a48e4587b6b9e109f2ebc0ff68d104a235e0a02af0df65f82186657f03d88b3ee2e6956452c97ff63622dda19cbb8164474783b438a561";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/ast/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/ast/firefox-62.0b14.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "5123dcd2f0d4dafbedf3efdac669ed9f3837e092d53f23a6b4802b83e8f61b401f03e41911645125138bd09da1c3f575c053b86cc27bad78ad49dedebaa79ce6";
+      sha512 = "e352479b16a20c8de5cad7d7483235f15f5a2aa14256d2a8f880083553c49b3926750c4d9383f781e04113e054623cdcae88fe3a1bf744ae66660d89c50aa666";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/az/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/az/firefox-62.0b14.tar.bz2";
       locale = "az";
       arch = "linux-x86_64";
-      sha512 = "aef97cda7e502651e88fa2099d39420da38ba06093516946223940fb18ea0fe52e0e5c83d1a7234003d70280320c40a83bd7e4a3329dd5c92e7b97144d884595";
+      sha512 = "8ad214e95cf493a9544fa587d8c790054470f7c5abeeffc11d7c8a0bc77438fabde6b3add423ff1ffe5a8db4c54b10419fd242780a6ac145c3b0513a0cac1bff";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/be/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/be/firefox-62.0b14.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha512 = "d6e04dce19047627906d38362012de87f6f64f919de2f1d23e60d4c686d1a7434290710def14a2cf3e932876949f64e74be3de1ab5318ef1a6118d32b916850a";
+      sha512 = "145adec7ea9af6c35b0b3a98839b96b9a7525adcff14beca171470877f2e6e2948b4f82a299e7e46939dde27a742705007be3b09f20b3767eb49f4c18697f135";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b10/linux-x86_64/bg/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/62.0b14/linux-x86_64/bg/firefox-62.0b14.tar.bz2";
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-      sha512 = "4a7a366523294ecddacdab2aa863f06eda275fa31cf5ddfbbebd5cb740399507185134c3950a24183da89f87a6cfffe54e2c934625b384084a424ce150e864a5";
+      sha512 = "d79c5431e4db23b52ead1bf6911b91c6672edefda033a20bca2ccbecff2e72afc2355934f5963dcb4f756a71c877dac09913b926c37415845b40bed63ce349a9";
     }
     ];
 }
diff --git a/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix
index a581f3f48fb6..eec00d399bd9 100644
--- a/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix
+++ b/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix
@@ -1,995 +1,995 @@
 {
-  version = "62.0b10";
+  version = "62.0b14";
   sources = [
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/ach/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/ach/firefox-62.0b14.tar.bz2";
       locale = "ach";
       arch = "linux-x86_64";
-      sha512 = "d28ef8bf25a809eac59456ae1952cf2f0b3f2e9d3b610b91d7bb263e206e24bb5c553be46c450d7c71ce16f0b65d559796e430b9f0700cee953c891088ea13b2";
+      sha512 = "da8d3b8da37ddc7e4be14cc620e0961d81da6ee5dc30726c042bfd788df26897e68331a581ed01920f39a77fa913f4844b5a7660e02799bc067aec9f0a25d63c";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/af/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/af/firefox-62.0b14.tar.bz2";
       locale = "af";
       arch = "linux-x86_64";
-      sha512 = "3967402c97db66c917ba06f6d2514ed6cdf072a34eef3b6a47c3751f8ebd04c80dfe6586abc7c5430a573fe0375761b448f5d60a062dbf6a3d2f84700924f2ea";
+      sha512 = "51b63bbddaac26f1f68298f874e063da760312eda8c2b42b8a090809aa75ea13dead3c6893f860603651ddf585baaf598a25f24bdd539902f046d02c3d821841";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/an/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/an/firefox-62.0b14.tar.bz2";
       locale = "an";
       arch = "linux-x86_64";
-      sha512 = "1aa485381ada3fab9df3a925bd143742976303576df3d30a7ef095b12628f9d0eb8bd21152dbfbb6d73d2f4e4c1364c3481e9b96a3a003b802c618aecd1237b5";
+      sha512 = "de8e4c5fcb5502ae3cd3eb4e44b668c9702c7cd51e8bc5c41a5384f984c7745ca3612f4b528cb0d01eaca2f52e82ff76b3e6bae764f61a2e96603f6a1f66ad74";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/ar/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/ar/firefox-62.0b14.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "0c7ae9d3de5710ea08ee80610a3e7b0ed5cd89d1bddf3c64b478a10f2250286b20ea062c663ec5ef92a5e8c3af9432929f47f1b2c760d1222aa3eacfee3f3979";
+      sha512 = "7fdc45292c3f5e37c13cb350be5c49d13eca7955bd0157578c7fe67f566d72ba9be70191e3f5e967301923a6d12115f3e369f00564518b2c114757d0bf9e2cf1";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/as/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/as/firefox-62.0b14.tar.bz2";
       locale = "as";
       arch = "linux-x86_64";
-      sha512 = "662f4a0a78329e80c9eb466308839036091f31b1f258b5eb5df31f3dcc7b6d0d6986d506392dec30f822c69fc207e5669e77ffdf26c7b7156b42a73e155b65ee";
+      sha512 = "3bf37c6b179a263a0db7e18a194d86aa66b735e313bfe9d21e3d71d2d16d5d490c13c2feb6cbf64bf3fc7a38a42a6ee0dfde30595eae24b8434273d8b0de93aa";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/ast/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/ast/firefox-62.0b14.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "ca0b3d4722075dc6ebef171bc36e1b4e9206bce04c8fdb1d038b0abbc120671a2ef4d6023bea627f0c99fbffcd999b70634de90e1b51c518d8642892545c29cc";
+      sha512 = "570f407929ce9a7562cc83b96d7ce430aae47b06c2ba76a6abab468f1399078131b30b1492dc0f156e3a578f4bbbe82bfd1ead03d61f7242e9928394865a6c32";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/az/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/az/firefox-62.0b14.tar.bz2";
       locale = "az";
       arch = "linux-x86_64";
-      sha512 = "b981b720cb776a8e83953f8e4dac7794c981681d8e6da010f0afcb7e90df5884058349cc6a12d4f5a360cf7f9067b87afbe862842f0ad016697999bc3d94ad82";
+      sha512 = "90e03b55ce56605f336e33dcfd0946dfc9e3070c11beb73ab2cf56c4876f40d189b9ff7b221765d362f4021931523b6820264367f3bcc23d7f3ed741e8c3d371";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/be/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/be/firefox-62.0b14.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha512 = "a7bd1f001152e4ea8a887e685b126bfb4dedc7a30270128d535eedc04dbd489a3d6117ccdd8893f5753b7d5227d4731cbdfa1f7bc292712ea2634006aa55d6ab";
+      sha512 = "3e129ac99041031a182c7f6c0111d4ecb44e870cdf718bad3073bd9fcc8da99e4ee3cccc5ed97bf468b398b5b5a554618291417fd2fde87cdf3e48925b519a4c";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/bg/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/bg/firefox-62.0b14.tar.bz2";
       locale = "bg";
       arch = "linux-x86_64";
-      sha512 = "a6b5f4d3aa3db7be416f4bb604a749c8118fcdf5d3bf01cc57dab87c874f0f52412658c9f509c2d09100f4cdf7f5b446d11fb45bfea2d25d4e65276f3257ddfd";
+      sha512 = "aac418365d09bcffb1ec5f501091d07e6f14d26c44af8abe9d630f9985b46ecedc67084da83b57bcaa42c5af3053a9d05344d341f911f8bb8f4046e364469333";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/bn-BD/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/bn-BD/firefox-62.0b14.tar.bz2";
       locale = "bn-BD";
       arch = "linux-x86_64";
-      sha512 = "3cf7f43ca3fcb538cc28c9ab7d3d6441f15123a1f3275cc81b1dec1007012a970d18ee52e8b8781568247c5a854aa78bc316656dcaef48edb11c7b6c99874bc9";
+      sha512 = "c06f2b032a60ad2e26d8847349e0019a87cfc74b7525914d3d1181b2a229ed2426c228729aa2e08acf54a8c99d07b647e0ea0d341f297d6b6dd94a4013f2ee60";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/bn-IN/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/bn-IN/firefox-62.0b14.tar.bz2";
       locale = "bn-IN";
       arch = "linux-x86_64";
-      sha512 = "0ebaa8740a3c215ee275c7ea7669ec4bebbfa4a20f46ef4bbb81b51362fecd72fa1d16bf7e58822024b59934f478699114ca744657aa523d90bff6655b776e5e";
+      sha512 = "fad4be3a483ebcaf2555b4753aed76dd03c45172a206b30d7c37a9d5943dc6b21739131c8eaff0e56bca7f8896f261d4a6e0902af51693e75213d9145562efa5";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/br/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/br/firefox-62.0b14.tar.bz2";
       locale = "br";
       arch = "linux-x86_64";
-      sha512 = "288ca47c3f89b6fec2312bd254e2d9aa4469a79a767b2fdd9787a7dcf9af589d17a8353a1260a773df63069628b69e916c2bf76c85076f123667f932b16d04c3";
+      sha512 = "65eae886ec548ccae53b6d6fc45181acb6c76b0376481c5103a3bd902b83a7175f5bdf88cff75bc06ceb48483dd33bcc9f09db0f92af66d9de09305469f4a000";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/bs/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/bs/firefox-62.0b14.tar.bz2";
       locale = "bs";
       arch = "linux-x86_64";
-      sha512 = "1099fa298f51a7f65dc585f0c777c37f49df0b6c1a18265d0f7460fcbe52e791a9ee8af2af37901f3d73c6acfe919a37966deb4ef5399f59f2ae66563a02ca44";
+      sha512 = "f23cb86e13c3fd8d6a972d590dc8f40847a9f4d486afb6a574f5377989f66b50745fd31be9a661e61c9a4baa408f04a64897c7e6aee756bcdef7983def8a552d";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/ca/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/ca/firefox-62.0b14.tar.bz2";
       locale = "ca";
       arch = "linux-x86_64";
-      sha512 = "775203aed14e61aed84e15ace9336799873804eee4907ff924a994fe8ba99d4e49960dc1543c4cd70c4fb805ec1474a657c14791ac8322a7d59c824887aa2f7e";
+      sha512 = "c353548ac0c7ce880fd51399a0534b17f6cb2273970560af0fb124425ae166aa75abad71d2080e92495164f34692c42be06456c74c93a43136df34c74fe0c7b0";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/cak/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/cak/firefox-62.0b14.tar.bz2";
       locale = "cak";
       arch = "linux-x86_64";
-      sha512 = "addc8fc89acffe5ed37f011b2ef9b3f1fcb815e2e0f2b3f944ab460688c99e54c92ddc35719e56770be3426d9380e33c2bff834fd3b327427efd20d8fa3f83ab";
+      sha512 = "f252e303170253f14d5e7294537b8c593e04ed7e9051b1fccd7446dc08e56a40a6c346203f1299e2520b2c4ed5a5346b31f9dfc3b20fa7dba5b63330302ebcaa";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/cs/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/cs/firefox-62.0b14.tar.bz2";
       locale = "cs";
       arch = "linux-x86_64";
-      sha512 = "33c038620535a829a445de6f1b9f9d09e4d6078df3c9172c9ce59a27ad99f7416976fead6ad5071f11fd4fb626b36dd269f072c293dac7fae59fa65c1514e95e";
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     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/cy/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/cy/firefox-62.0b14.tar.bz2";
       locale = "cy";
       arch = "linux-x86_64";
-      sha512 = "5355af8ce344786f3a81a7cb53a316cca445eda21b7d905cd4602436ce3d3635a0e99f1311c47014e95875deb50c7bfefbfe3efeceb3faf57e7276f95aeab723";
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     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/da/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/da/firefox-62.0b14.tar.bz2";
       locale = "da";
       arch = "linux-x86_64";
-      sha512 = "11a3139618cd5e822b467df2c1e4bb79caed748bdeb724dc29e6a4d94f6fa75d8434b219a3ce5128f70ba841cd30a8c21516840d7743be9f9015dc919251184d";
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-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/de/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/de/firefox-62.0b14.tar.bz2";
       locale = "de";
       arch = "linux-x86_64";
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-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/dsb/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/dsb/firefox-62.0b14.tar.bz2";
       locale = "dsb";
       arch = "linux-x86_64";
-      sha512 = "80e5f2192f0b4c7449bec3bacb15cea21f4afc2360c5860c76be29e65ad7894915f03b1bcd719d228ed7f66cdbeb3d20867dc9cbd4acdbb16b7afaddd56c3887";
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     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/el/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/el/firefox-62.0b14.tar.bz2";
       locale = "el";
       arch = "linux-x86_64";
-      sha512 = "3dc1eee7205d63c7788b1152f0632621e8f85c1f23e154119ac7106ebcb75c807f6f9c534519e1822f7c5c3fa58067f9c5814d60fd1c045169248e189cfca323";
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-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/en-CA/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/en-CA/firefox-62.0b14.tar.bz2";
       locale = "en-CA";
       arch = "linux-x86_64";
-      sha512 = "fe145a9519f1eae0099903e609bce27d59461e3760a9fa11ad9cb5b8b32e2377d014d7f56d275305669313cab3c9085901068ed30355dbaa5a988c9af1e28ee8";
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-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/en-GB/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/en-GB/firefox-62.0b14.tar.bz2";
       locale = "en-GB";
       arch = "linux-x86_64";
-      sha512 = "7afe1eab3f574a7c25230bfb09ea1d341b6cccfaebb36a659a5f7a1b3c5d6fe2ebf4bb6220cd8aa12159a67ec2cd42d0425c1aae4c5b672b542cd08a473efb79";
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-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/en-US/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/en-US/firefox-62.0b14.tar.bz2";
       locale = "en-US";
       arch = "linux-x86_64";
-      sha512 = "e0840f4e92de51086ec442a048adc62d5222a83e9ac6e5b3833b76c71a8559c764c7d44aa7e1aed24a1f58a3f2e71cdfe866b329b855d3c9f51d69537ab6e9f5";
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     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/en-ZA/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/en-ZA/firefox-62.0b14.tar.bz2";
       locale = "en-ZA";
       arch = "linux-x86_64";
-      sha512 = "7784aa459edc544cfbdc61f8e66832e29aba98883b818e5c304210618a5047dd775109a95d902a9c336c6a1011e0d414f02c43dd7e250d83b096758f2fe42a4b";
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     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-x86_64/eo/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-x86_64/eo/firefox-62.0b14.tar.bz2";
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       arch = "linux-i686";
-      sha512 = "3fbaf21aa3d1e4e8feade93d015eecc97a50d6dec6e3aa487d450f53348297d1c48e38cd221282fc6ab4fb00fec099962225406ac89329519ccaed588a75ef88";
+      sha512 = "34fec55bd47cf55ef0877e91fcf62125c277de7755c0a0991cd4d79acb3b1b56f732a79d9bdfeab8f4f3788187fd63f459f453576f7ff988581816584c0a5fef";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/ta/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/ta/firefox-62.0b14.tar.bz2";
       locale = "ta";
       arch = "linux-i686";
-      sha512 = "0dd9331f4ab4c35559551d433ecd1a2ea2ef917d1b04dc8b727a77540318100337b73a4500b0ccbfb24fa853b2749df5c74820af794a9579423e9aaa4b62a71f";
+      sha512 = "d92e0f051096dc1d2c21051fa805ce20e43c70ce68260f78565f2f506ad02adfc349996af4d64dd797f7b6961a344a90e7c686f857100ea8c4f6ef26c6d1f769";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/te/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/te/firefox-62.0b14.tar.bz2";
       locale = "te";
       arch = "linux-i686";
-      sha512 = "ddf351df58fdfcca150012fb033055ef0b3e5175b587dbe9a1ad92144c5170f765c90cd8b8405aac85b7f16da1f4bfbf6316eaa8f45144397a06a11aa944cc75";
+      sha512 = "e3f06f8a71ecaee56a7c0441758eb4f43d940b8a85699631229c64add60599d3d686e9d6db55bf2fe2b8b1fedeadf4d0cf729f3b9ca96094e9422b0077683a5f";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/th/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/th/firefox-62.0b14.tar.bz2";
       locale = "th";
       arch = "linux-i686";
-      sha512 = "d838e1ba30654631926a16ac3b8fec40989da3a0ffb95ae59990f9a22cf560e30222941777241c94b5cce9336f073df1d5a6472003481b36ac514c6ae12376be";
+      sha512 = "fb948deeb85930418bcfc41b445dbf448afca16711c37382b07202119aff770375a632f465e2e4dfe5367fd833fc6a8a5a4ce582b4eae39c09ca11293b7deb8d";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/tr/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/tr/firefox-62.0b14.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "3925df8ea333c2a9bf1c3e5fc09c5d6d662aa2644fd34f81f94221d895514989fe1e35ef3b688cafc13229744e3c8f6e2af08c5d08c10ee2544418195cbe3221";
+      sha512 = "de0a8aabe221ad6bcdc5f023a765f0af78002e9b266a7371b21ce62478007cd0e1e0ff6fbced9054a2d9439c9aad0571ec48c2f58281acecf5e598b2978798cf";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/uk/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/uk/firefox-62.0b14.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "ee80ae9b0332432a9afeac420484cb0649a0ea947fd869835c41973ef82c10ec1c469105efad08f6a6bba56f0fe7fa27ecdb8fa939fe210902f3dfe18fa6ae4f";
+      sha512 = "8041a47fb53ac91bdd702a4b77cab9c4f171ba202eb9f587cb2d9910ab1a6e3b631fbc03a93dbd935d024410db2d5438118c76818da0a8aadd10704fd445a1f9";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/ur/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/ur/firefox-62.0b14.tar.bz2";
       locale = "ur";
       arch = "linux-i686";
-      sha512 = "fc7f6bc1d948a3572ff3aa169858b0bb1b63c9dce3128cb4f55177e45f17554813e2a65daa4f7ff1a2c870022535ac556f98ac28f58490d5914abcaf8bb9c7ec";
+      sha512 = "d2b0f990f29b00a77093e3cc30cd03d2f83bd82d7246aa8f4dec2e8fc325c9dabb13b02014ddf55b52963a10ed9973b12fad58703d9544936560ec0ce736de99";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/uz/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/uz/firefox-62.0b14.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha512 = "ee9f587298401f6895503c109e735cb73bf60ef85891a189dc27dcb752b9c40d9b91e9bc943aa6d393be80575a90ed6f1dd1b181590133173735f71ffb517546";
+      sha512 = "4fe7543f8346abf4880ae86d2dea9515cc9c5275ff402239ecf2400bf76d37079c66584c34a13b690c43bb432e19610169ba4605406810a55758b50b16aa6e94";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/vi/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/vi/firefox-62.0b14.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "8a871f77be68b897cc5ac78a8f83984954f16b55459ab46ede1f970cb912ba7c0326de9c39ce1847bcb41c1eaf032707ad7dc8754f7c6c7520551ab8ab7c98d0";
+      sha512 = "7d7627ee7403e297fb0dccd4833807941846532fcf42d2235d0e80feca4f1d9cff74f6e715bf758b0a0a3952d56b3f9d25c3123ee8110ad4b08168df0dda031a";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/xh/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/xh/firefox-62.0b14.tar.bz2";
       locale = "xh";
       arch = "linux-i686";
-      sha512 = "6f592662d17b121d0b8d7dd25441b9c948432ab55ffc2f8e34415e9eaf75e97ba707bcff00afbba84d1b664e69598897c3a4595332b14e533378eaf52dc830c1";
+      sha512 = "0031e3080f1effdb659828479ded927152239781064242d48752a45cd6eaac6d3cc5736d5eadad6310955425d90cab790415d85541324c1566ca119060f3e57d";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/zh-CN/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/zh-CN/firefox-62.0b14.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "f69ed795a4262c4288a2942845caaab66375d9db4d955fb22535862a29b18217e8f8bedb2ffffeade15f5276e8a76bbac2f0c0ae31b7851b20c696ed1b8605bc";
+      sha512 = "52c9149f86c860dddf31dad70c0287b72c3eafa0f6d6ab86c7f40e7b3aff7d11c37678bb39d8c339118ae1846af152a432875e124a727c06b25d3f8ffe07db80";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b10/linux-i686/zh-TW/firefox-62.0b10.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/62.0b14/linux-i686/zh-TW/firefox-62.0b14.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "9834484be2696bc4caba686dd4a87bc2a15a1c6125468d570cc1ac837ec111e2fac22b04f6d2226ba705c04e69195e95258848ba9ef0711fc2cbdbb1521302b1";
+      sha512 = "1dd72bcb1d5e84c0f49e585b949a342a29173b437818be60b8e34000da6c85f35d838e1cdc58210d9f494b4d2d89c73d1788eca0e2db2f55dcf4d81eac3d84f9";
     }
     ];
 }
diff --git a/pkgs/applications/networking/cluster/openshift/default.nix b/pkgs/applications/networking/cluster/openshift/default.nix
index 6f836d27357a..0f137a872da6 100644
--- a/pkgs/applications/networking/cluster/openshift/default.nix
+++ b/pkgs/applications/networking/cluster/openshift/default.nix
@@ -9,15 +9,17 @@
 with lib;
 
 let
-  version = "3.9.0";
+  version = "3.10.0";
   ver = stdenv.lib.elemAt (stdenv.lib.splitString "." version);
   versionMajor = ver 0;
   versionMinor = ver 1;
   versionPatch = ver 2;
-  gitCommit = "191fece";
+  gitCommit = "dd10d17";
   # version is in vendor/k8s.io/kubernetes/pkg/version/base.go
-  k8sversion = "v1.9.1";
-  k8sgitcommit = "a0ce1bc657";
+  k8sversion = "v1.10.0";
+  k8sgitcommit = "b81c8f8";
+  k8sgitMajor = "0";
+  k8sgitMinor = "1";
 in stdenv.mkDerivation rec {
   name = "openshift-origin-${version}";
   inherit version;
@@ -26,7 +28,7 @@ in stdenv.mkDerivation rec {
     owner = "openshift";
     repo = "origin";
     rev = "v${version}";
-    sha256 = "06k0zilfyvll7z34yirraslgpwgah9k6y5i6wgi7f00a79k76k78";
+    sha256 = "13aglz005jl48z17vnggkvr39l5h6jcqgkfyvkaz4c3jakms1hi9";
 };
 
   # go > 1.10
@@ -38,15 +40,15 @@ in stdenv.mkDerivation rec {
   patchPhase = ''
     patchShebangs ./hack
 
-    substituteInPlace pkg/oc/bootstrap/docker/host/host.go  \
+    substituteInPlace pkg/oc/clusterup/docker/host/host.go  \
       --replace 'nsenter --mount=/rootfs/proc/1/ns/mnt findmnt' \
       'nsenter --mount=/rootfs/proc/1/ns/mnt ${utillinux}/bin/findmnt'
 
-    substituteInPlace pkg/oc/bootstrap/docker/host/host.go  \
+    substituteInPlace pkg/oc/clusterup/docker/host/host.go  \
       --replace 'nsenter --mount=/rootfs/proc/1/ns/mnt mount' \
       'nsenter --mount=/rootfs/proc/1/ns/mnt ${utillinux}/bin/mount'
 
-    substituteInPlace pkg/oc/bootstrap/docker/host/host.go  \
+    substituteInPlace pkg/oc/clusterup/docker/host/host.go  \
       --replace 'nsenter --mount=/rootfs/proc/1/ns/mnt mkdir' \
       'nsenter --mount=/rootfs/proc/1/ns/mnt ${coreutils}/bin/mkdir'
   '';
@@ -61,6 +63,8 @@ in stdenv.mkDerivation rec {
     echo "OS_GIT_COMMIT=${gitCommit}" >> os-version-defs
     echo "KUBE_GIT_VERSION=${k8sversion}" >> os-version-defs
     echo "KUBE_GIT_COMMIT=${k8sgitcommit}" >> os-version-defs
+    echo "KUBE_GIT_MAJOR=${k8sgitMajor}" >> os-version-defs
+    echo "KUBE_GIT_MINOR=${k8sgitMinor}" >> os-version-defs
     export OS_VERSION_FILE="os-version-defs"
     export CC=clang
     make all WHAT='${concatStringsSep " " components}'
diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
index b7066a501a3c..459bdf98b1e4 100644
--- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
+++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
@@ -3,9 +3,24 @@
 , dbus, libX11, xorg, libXi, libXcursor, libXdamage, libXrandr, libXcomposite
 , libXext, libXfixes, libXrender, libXtst, libXScrnSaver, nss, nspr, alsaLib
 , cups, expat, udev
+# Unfortunately this also overwrites the UI language (not just the spell
+# checking language!):
+, hunspellDicts, spellcheckerLanguage ? null # E.g. "de_DE"
+# For a full list of available languages:
+# $ cat pkgs/development/libraries/hunspell/dictionaries.nix | grep "dictFileName =" | awk '{ print $3 }'
 }:
 
 let
+  customLanguageWrapperArgs = (with lib;
+    let
+      # E.g. "de_DE" -> "de-de" (spellcheckerLanguage -> hunspellDict)
+      spellLangComponents = splitString "_" spellcheckerLanguage;
+      hunspellDict = elemAt spellLangComponents 0 + "-" + toLower (elemAt spellLangComponents 1);
+    in if spellcheckerLanguage != null
+      then ''
+        --set HUNSPELL_DICTIONARIES "${hunspellDicts.${hunspellDict}}/share/hunspell" \
+        --set LC_MESSAGES "${spellcheckerLanguage}"''
+      else "");
   rpath = lib.makeLibraryPath [
     alsaLib
     atk
@@ -68,6 +83,7 @@ in stdenv.mkDerivation rec {
              --set-rpath ${rpath}:$out/libexec $out/libexec/signal-desktop
     wrapProgram $out/libexec/signal-desktop \
       --prefix XDG_DATA_DIRS : "${gtk3}/share/gsettings-schemas/${gtk3.name}/" \
+      ${customLanguageWrapperArgs} \
       "''${gappsWrapperArgs[@]}"
 
     # Symlink to bin
diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix
index dab23e1cb4af..e1ced2df9f37 100644
--- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix
+++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix
@@ -14,7 +14,7 @@ in {
   stable = mkTelegram stableVersion;
   preview = mkTelegram (stableVersion // {
     stable = false;
-    version = "1.3.11";
-    sha256Hash = "057b7ccba7k2slzbp9xzcs3fni40x7gz3wy13xfgxywr12f04h1r";
+    version = "1.3.12";
+    sha256Hash = "00z4ljs4fvbk7sf8wv1v50kln26gv8q12x6q41ai9gfzkvq5f69a";
   });
 }
diff --git a/pkgs/applications/networking/p2p/soulseekqt/default.nix b/pkgs/applications/networking/p2p/soulseekqt/default.nix
index e525c564c509..44e434aa8ee9 100644
--- a/pkgs/applications/networking/p2p/soulseekqt/default.nix
+++ b/pkgs/applications/networking/p2p/soulseekqt/default.nix
@@ -2,41 +2,59 @@
 , fetchurl
 , dbus
 , zlib, fontconfig
+, qtbase, qtmultimedia
+, libjson, libgpgerror
 , libX11, libxcb, libXau, libXdmcp, freetype, libbsd
+, pythonPackages, squashfsTools, makeDesktopItem
 }:
 
 with stdenv.lib;
 let
   libPath = makeLibraryPath
-    [ stdenv.cc.cc dbus libX11 zlib libX11 libxcb libXau libXdmcp freetype fontconfig libbsd ];
+    [ stdenv.cc.cc qtbase qtmultimedia dbus libX11 zlib libX11 libxcb libXau libXdmcp freetype fontconfig libbsd libjson libgpgerror];
 
-  version = "2016-1-17";
+  version = "2018-1-30";
 
   mainbin = "SoulseekQt-" + (version) +"-"+ (if stdenv.is64bit then "64bit" else "32bit");
   srcs = {
-    "i686-linux" = fetchurl {
-      url = "https://www.dropbox.com/s/kebk1b5ib1m3xxw/${mainbin}.tgz";
-      sha256 = "0r9rhnfslkgbw3l7fnc0rcfqjh58amgh5p33kwam0qvn1h1frnir";
-    };
-
     "x86_64-linux" = fetchurl {
-      url = "https://www.dropbox.com/s/7qh902qv2sxyp6p/${mainbin}.tgz";
-      sha256 = "05l3smpdvw8xdhv4v8a28j0yi1kvzhrha2ck23g4bl7x9wkay4cc";
+      url = "https://www.dropbox.com/s/0vi87eef3ooh7iy/${mainbin}.tgz";
+      sha256 = "0d1cayxr1a4j19bc5a3qp9pg22ggzmd55b6f5av3lc6lvwqqg4w6";
     };
   };
 
+  desktopItem = makeDesktopItem {
+    name = "SoulseekQt";
+    exec = "soulseekqt";
+    icon = "$out/share/soulseekqt/";
+    comment = "Official Qt SoulSeek client"; 
+    desktopName = "SoulseekQt";
+    genericName = "SoulseekQt";
+    categories = "Network;";
+  };
+
 in stdenv.mkDerivation rec {
 
   name = "soulseekqt-${version}";
   inherit version;
   src = srcs."${stdenv.system}" or (throw "unsupported system: ${stdenv.system}");
 
-  sourceRoot = ".";
-  buildPhase = ":";   # nothing to build
+  dontBuild = true;
+
+  buildInputs = [ pythonPackages.binwalk squashfsTools ];
+
+  # avoid usage of appimagetool
+  unpackCmd = ''
+    export HOME=$(pwd) # workaround for binwalk
+    tar xvf $curSrc && binwalk --quiet \
+       ${mainbin}.AppImage -D 'squashfs:.squashfs:unsquashfs %e'
+    '';
 
   installPhase = ''
-    mkdir -p $out/bin
-    cp ${mainbin} $out/bin/soulseekqt
+    mkdir -p $out/{bin,share/soulseekqt}
+    cd squashfs-root/
+    cp -R soulseek.png translations $out/share/soulseekqt
+    cp SoulseekQt $out/bin/soulseekqt
   '';
 
   fixupPhase = ''
@@ -50,6 +68,6 @@ in stdenv.mkDerivation rec {
     homepage = http://www.soulseekqt.net;
     license = licenses.unfree;
     maintainers = [ maintainers.genesis ];
-    platforms = [ "i686-linux" "x86_64-linux" ];
+    platforms = [ "x86_64-linux" ];
   };
 }
diff --git a/pkgs/applications/science/math/sage/default.nix b/pkgs/applications/science/math/sage/default.nix
index 0bbf2cec0dcb..7e62f0cf75ee 100644
--- a/pkgs/applications/science/math/sage/default.nix
+++ b/pkgs/applications/science/math/sage/default.nix
@@ -8,10 +8,6 @@ let
   # https://trac.sagemath.org/ticket/15980 for tracking of python3 support
   python = nixpkgs.python2.override {
     packageOverrides = self: super: {
-      cypari2 = super.cypari2.override { inherit pari; };
-
-      cysignals = super.cysignals.override { inherit pari; };
-
       # python packages that appear unmaintained and were not accepted into the nixpkgs
       # tree because of that. These packages are only dependencies of the more-or-less
       # deprecated sagenb. However sagenb is still a default dependency and the doctests
@@ -24,7 +20,7 @@ let
       pybrial = self.callPackage ./pybrial.nix {};
 
       sagelib = self.callPackage ./sagelib.nix {
-        inherit flint ecl pari eclib ntl arb;
+        inherit flint ecl arb;
         inherit sage-src openblas-blas-pc openblas-cblas-pc openblas-lapack-pc pynac singular;
         linbox = nixpkgs.linbox.override { withSage = true; };
       };
@@ -38,20 +34,20 @@ let
       };
 
       env-locations = self.callPackage ./env-locations.nix {
-        inherit pari_data ecl pari;
+        inherit pari_data ecl;
         inherit singular;
         three = nodePackages_8_x.three;
         mathjax = nodePackages_8_x.mathjax;
       };
 
       sage-env = self.callPackage ./sage-env.nix {
-        inherit sage-src python rWrapper openblas-cblas-pc ecl singular eclib pari palp flint pynac pythonEnv giac ntl;
+        inherit sage-src python rWrapper openblas-cblas-pc ecl singular palp flint pynac pythonEnv;
         pkg-config = nixpkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
       };
 
       sage-with-env = self.callPackage ./sage-with-env.nix {
-        inherit pari eclib pythonEnv ntl;
-        inherit sage-src openblas-blas-pc openblas-cblas-pc openblas-lapack-pc pynac singular giac;
+        inherit pythonEnv;
+        inherit sage-src openblas-blas-pc openblas-cblas-pc openblas-lapack-pc pynac singular;
         pkg-config = nixpkgs.pkgconfig; # not to confuse with pythonPackages.pkgconfig
         three = nodePackages_8_x.three;
       };
@@ -106,41 +102,18 @@ let
     });
   };
 
-  # https://trac.sagemath.org/ticket/25532
-  ntl = nixpkgs.ntl.overrideAttrs (oldAttrs: rec {
-    name = "ntl-10.5.0";
-    sourceRoot = "${name}/src";
-    src = fetchurl {
-      url = "http://www.shoup.net/ntl/${name}.tar.gz";
-      sha256 = "1lmldaldgfr2b2a6585m3np5ds8bq1bis2s1ajycjm49vp4kc2xr";
-    };
-  });
-
-  giac = nixpkgs.giac.override { inherit ntl; };
   arb = nixpkgs.arb.override { inherit flint; };
 
-  # update causes issues
-  # https://groups.google.com/forum/#!topic/sage-packaging/cS3v05Q0zso
-  # https://trac.sagemath.org/ticket/24735
-  singular = (nixpkgs.singular.override { inherit ntl flint; }).overrideAttrs (oldAttrs: {
-    name = "singular-4.1.0p3";
-    src = fetchurl {
-      url = "http://www.mathematik.uni-kl.de/ftp/pub/Math/Singular/SOURCES/4-1-0/singular-4.1.0p3.tar.gz";
-      sha256 = "105zs3zk46b1cps403ap9423rl48824ap5gyrdgmg8fma34680a4";
-    };
-  });
+  singular = nixpkgs.singular.override { inherit flint; };
 
   # *not* to confuse with the python package "pynac"
-  # https://trac.sagemath.org/ticket/24838 (depends on arb update)
   pynac = nixpkgs.pynac.override { inherit singular flint; };
 
-  eclib = nixpkgs.eclib.override { inherit pari ntl; };
-
   # With openblas (64 bit), the tests fail the same way as when sage is build with
   # openblas instead of openblasCompat. Apparently other packages somehow use flints
   # blas when it is available. Alternative would be to override flint to use
   # openblasCompat.
-  flint = nixpkgs.flint.override { withBlas = false; inherit ntl; };
+  flint = nixpkgs.flint.override { withBlas = false; };
 
   # Multiple palp dimensions need to be available and sage expects them all to be
   # in the same folder.
@@ -165,15 +138,6 @@ let
 
   # https://trac.sagemath.org/ticket/22191
   ecl = nixpkgs.ecl_16_1_2;
-
-  # sage currently uses an unreleased version of pari
-  pari = (nixpkgs.pari.override { withThread = false; }).overrideAttrs (attrs: rec {
-    version = "2.10-1280-g88fb5b3"; # on update remove pari-stackwarn patch from `sage-src.nix`
-    src = fetchurl {
-      url = "mirror://sageupstream/pari/pari-${version}.tar.gz";
-      sha256 = "19gbsm8jqq3hraanbmsvzkbh88iwlqbckzbnga3y76r7k42akn7m";
-    };
-  });
 in
   python.pkgs.sage-wrapper // {
     doc = python.pkgs.sagedoc;
diff --git a/pkgs/applications/science/math/sage/patches/arb-2.13.0.patch b/pkgs/applications/science/math/sage/patches/arb-2.13.0.patch
deleted file mode 100644
index a20f1670a256..000000000000
--- a/pkgs/applications/science/math/sage/patches/arb-2.13.0.patch
+++ /dev/null
@@ -1,427 +0,0 @@
-commit c885927e25b29bd23869e02379c2918da430323e
-Author: Timo Kaufmann <timokau@zoho.com>
-Date:   Sat Jun 30 02:26:15 2018 +0200
-
-diff --git a/build/pkgs/arb/checksums.ini b/build/pkgs/arb/checksums.ini
-index 1924ee03c3..9323b97391 100644
---- a/build/pkgs/arb/checksums.ini
-+++ b/build/pkgs/arb/checksums.ini
-@@ -1,4 +1,4 @@
- tarball=arb-VERSION.tar.gz
--sha1=27476d0529e48a07d92da90bd0fb80dd18f443e3
--md5=733285d9705d10b8024e551ffa81952f
--cksum=2391183744
-+sha1=44eda7bf8eaa666c45b1fc2c1b5bd08756d94b58
-+md5=fa24de9fffe4394fb6a7a6792e2ecc5f
-+cksum=3689220688
-diff --git a/build/pkgs/arb/package-version.txt b/build/pkgs/arb/package-version.txt
-index c8810e9bdb..fb2c0766b7 100644
---- a/build/pkgs/arb/package-version.txt
-+++ b/build/pkgs/arb/package-version.txt
-@@ -1 +1 @@
--2.12.0.p0
-+2.13.0
-diff --git a/build/pkgs/arb/patches/arb-pie-hardening-conflict.patch b/build/pkgs/arb/patches/arb-pie-hardening-conflict.patch
-deleted file mode 100644
-index 3e5c0e708b..0000000000
---- a/build/pkgs/arb/patches/arb-pie-hardening-conflict.patch
-+++ /dev/null
-@@ -1,17 +0,0 @@
--In newer binutils, ld options -r and -pie conflict.
--Patch due to Jörg-Volker Peetz
--(source : https://groups.google.com/d/msg/sage-devel/TduebNoZuBE/sEULolL0BQAJ),
--packaged by Emmanuel Charpentier
--
--diff -ru arb-2.8.1-orig/Makefile.subdirs arb-2.8.1-new/Makefile.subdirs
----- arb-2.8.1-orig/Makefile.subdirs	2015-12-31 17:30:01.000000000 +0100
--+++ arb-2.8.1-new/Makefile.subdirs	2016-11-07 18:50:34.540051779 +0100
--@@ -52,7 +52,7 @@
-- 	$(QUIET_CC) $(CC) $(CFLAGS) $(INCS) -c $< -o $@ -MMD -MP -MF "$(BUILD_DIR)/$(MOD_DIR)_$*.d" -MT "$(BUILD_DIR)/$(MOD_DIR)_$*.d" -MT "$@"
-- 
-- $(MOD_LOBJ): $(LOBJS)
---	$(QUIET_CC) $(CC) $(ABI_FLAG) -Wl,-r $^ -o $@ -nostdlib
--+	$(QUIET_CC) $(CC) $(ABI_FLAG) -r $^ -o $@ -nostdlib
-- 
-- -include $(LOBJS:.lo=.d)
-- 
-diff --git a/src/sage/rings/complex_arb.pyx b/src/sage/rings/complex_arb.pyx
-index 70d51e655a..00e7caea2c 100644
---- a/src/sage/rings/complex_arb.pyx
-+++ b/src/sage/rings/complex_arb.pyx
-@@ -857,14 +857,14 @@ class ComplexBallField(UniqueRepresentation, Field):
-             [0.500000000000000 +/- 2.09e-16]
- 
-             sage: CBF.integral(lambda x, _: x.gamma(), 1 - CBF(i), 1 + CBF(i))
--            [+/- 3.95e-15] + [1.5723926694981 +/- 4.53e-14]*I
-+            [+/- 4...e-15] + [1.5723926694981 +/- 4...e-14]*I
- 
-             sage: C = ComplexBallField(100)
-             sage: C.integral(lambda x, _: x.cos() * x.sin(), 0, 1)
-             [0.35403670913678559674939205737 +/- 8.89e-30]
- 
-             sage: CBF.integral(lambda x, _: (x + x.exp()).sin(), 0, 8)
--            [0.34740017266 +/- 6.36e-12]
-+            [0.34740017266 +/- 6...e-12]
- 
-             sage: C = ComplexBallField(2000)
-             sage: C.integral(lambda x, _: (x + x.exp()).sin(), 0, 8) # long time
-@@ -879,14 +879,14 @@ class ComplexBallField(UniqueRepresentation, Field):
-             ....:     else:
-             ....:         return z.sqrt()
-             sage: CBF.integral(my_sqrt, -1 + CBF(i), -1 - CBF(i))
--            [+/- 1.14e-14] + [-0.4752076627926 +/- 5.18e-14]*I
-+            [+/- 1.14e-14] + [-0.4752076627926 +/- 5...e-14]*I
- 
-         Note, though, that proper handling of the ``analytic`` flag is required
-         even when the path does not touch the branch cut::
- 
-             sage: correct = CBF.integral(my_sqrt, 1, 2); correct
-             [1.21895141649746 +/- 3.73e-15]
--            sage: RBF(integral(sqrt(x), x, 1, 2))
-+            sage: RBF(integral(sqrt(x), x, 1, 2))  # long time
-             [1.21895141649746 +/- 1.79e-15]
-             sage: wrong = CBF.integral(lambda z, _: z.sqrt(), 1, 2) # WRONG!
-             sage: correct - wrong
-@@ -915,9 +915,9 @@ class ComplexBallField(UniqueRepresentation, Field):
-         the integrand is unbounded::
- 
-             sage: CBF.integral(lambda x, _: 1/x, -1, 1)
--            [+/- inf] + [+/- inf]*I
-+            nan + nan*I
-             sage: CBF.integral(lambda x, _: 1/x, 10^-1000, 1)
--            [+/- inf] + [+/- inf]*I
-+            nan + nan*I
-             sage: CBF.integral(lambda x, _: 1/x, 10^-1000, 1, abs_tol=1e-10)
-             [2302.5850930 +/- 1.26e-8]
- 
-@@ -928,14 +928,15 @@ class ComplexBallField(UniqueRepresentation, Field):
-             sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, abs_tol=1e-450)
-             [2.304377150950e-439 +/- 9.74e-452]
-             sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, abs_tol=0)
--            [2.304377150949e-439 +/- 7.53e-452]
--            sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, rel_tol=1e-4, abs_tol=0)
--            [2.30438e-439 +/- 3.90e-445]
-+            [2.304377150950e-439 +/- 7...e-452]
-+            sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, rel_tol=1e-2, abs_tol=0)
-+            [2.30438e-439 +/- 5.94e-445]
- 
--            sage: CBF.integral(lambda x, _: x*(1/x).sin(), 0, 1)
--            [+/- 0.644]
--            sage: CBF.integral(lambda x, _: x*(1/x).sin(), 0, 1, use_heap=True)
--            [0.3785300 +/- 4.32e-8]
-+            sage: epsi = CBF(1e-10)
-+            sage: CBF.integral(lambda x, _: x*(1/x).sin(), epsi, 1)
-+            [0.38 +/- 8.54e-3]
-+            sage: CBF.integral(lambda x, _: x*(1/x).sin(), epsi, 1, use_heap=True)
-+            [0.37853002 +/- 8.73e-9]
- 
-         ALGORITHM:
- 
-@@ -951,12 +952,12 @@ class ComplexBallField(UniqueRepresentation, Field):
- 
-             sage: i = QuadraticField(-1).gen()
-             sage: CBF.integral(lambda x, _: (1 + i*x).gamma(), -1, 1)
--            [1.5723926694981 +/- 4.53e-14] + [+/- 3.95e-15]*I
-+            [1.5723926694981 +/- 4...e-14] + [+/- 4...e-15]*I
- 
--            sage: ComplexBallField(10000).integral(lambda x, _: x.sin(), 0, 1, rel_tol=1e-400)
--            [0.459... +/- ...e-4...]
-+            sage: ComplexBallField(10000).integral(lambda x, _: x.sin(), 0, 1, rel_tol=1e-300)
-+            [0.459... +/- ...e-3...]
-             sage: CBF.integral(lambda x, _: x.sin(), 0, 100, rel_tol=10)
--            [+/- 7.61]
-+            [0.138 +/- 5.53e-4]
- 
-             sage: ComplexBallField(10000).integral(lambda x, _: x.sin(), 0, 1, abs_tol=1e-400)
-             [0.459697... +/- ...e-4...]
-@@ -2389,9 +2390,9 @@ cdef class ComplexBall(RingElement):
-             sage: ~CBF(i/3)
-             [-3.00000000000000 +/- 9.44e-16]*I
-             sage: ~CBF(0)
--            [+/- inf]
-+            nan
-             sage: ~CBF(RIF(10,11))
--            [0.1 +/- 9.53e-3]
-+            [0.1 +/- 9.10e-3]
-         """
-         cdef ComplexBall res = self._new()
-         if _do_sig(prec(self)): sig_on()
-@@ -2512,9 +2513,9 @@ cdef class ComplexBall(RingElement):
-             sage: CBF(-2, 1)/CBF(1, 1/3)
-             [-1.500000000000000 +/- 8.83e-16] + [1.500000000000000 +/- 5.64e-16]*I
-             sage: CBF(2+I)/CBF(0)
--            [+/- inf] + [+/- inf]*I
-+            nan + nan*I
-             sage: CBF(1)/CBF(0)
--            [+/- inf]
-+            nan
-             sage: CBF(1)/CBF(RBF(0, 1.))
-             nan
-         """
-@@ -2543,9 +2544,9 @@ cdef class ComplexBall(RingElement):
-             sage: CBF(0)^(1/3)
-             0
-             sage: CBF(0)^(-1)
--            [+/- inf]
-+            nan
-             sage: CBF(0)^(-2)
--            [+/- inf] + [+/- inf]*I
-+            nan + nan*I
- 
-         TESTS::
- 
-@@ -2656,12 +2657,12 @@ cdef class ComplexBall(RingElement):
-             sage: CBF(1).rising_factorial(5)
-             120.0000000000000
-             sage: CBF(1/3, 1/2).rising_factorial(300)
--            [-3.87949484514e+612 +/- 5.23e+600] + [-3.52042209763e+612 +/- 5.55e+600]*I
-+            [-3.87949484514e+612 +/- 5...e+600] + [-3.52042209763e+612 +/- 5...e+600]*I
- 
-             sage: CBF(1).rising_factorial(-1)
-             nan
-             sage: CBF(1).rising_factorial(2**64)
--            [+/- 2.30e+347382171305201370464]
-+            [+/- 2.30e+347382171326740403407]
-             sage: ComplexBallField(128)(1).rising_factorial(2**64)
-             [2.343691126796861348e+347382171305201285713 +/- 4.71e+347382171305201285694]
-             sage: CBF(1/2).rising_factorial(CBF(2,3))
-@@ -2700,7 +2701,7 @@ cdef class ComplexBall(RingElement):
-             [1.000000000000000 +/- 2.83e-16] + [-0.441271200305303 +/- 2.82e-16]*I
- 
-             sage: CBF('inf').log()
--            nan + nan*I
-+            [+/- inf]
-             sage: CBF(2).log(0)
-             nan + nan*I
-         """
-@@ -2808,7 +2809,7 @@ cdef class ComplexBall(RingElement):
-             sage: CBF(pi/2, 1/10).tan()
-             [+/- 2.87e-14] + [10.0333111322540 +/- 2.36e-14]*I
-             sage: CBF(pi/2).tan()
--            [+/- inf]
-+            nan
-         """
-         cdef ComplexBall res = self._new()
-         if _do_sig(prec(self)): sig_on()
-@@ -2825,7 +2826,7 @@ cdef class ComplexBall(RingElement):
-             sage: CBF(pi, 1/10).cot()
-             [+/- 5.74e-14] + [-10.0333111322540 +/- 2.81e-14]*I
-             sage: CBF(pi).cot()
--            [+/- inf]
-+            nan
-         """
-         cdef ComplexBall res = self._new()
-         if _do_sig(prec(self)): sig_on()
-@@ -3211,9 +3212,9 @@ cdef class ComplexBall(RingElement):
-             1.000000000000000*I
- 
-             sage: CBF(2+3*I).hypergeometric([1/4,1/3],[1/2])
--            [0.7871684267473 +/- 7.34e-14] + [0.2749254173721 +/- 9.23e-14]*I
-+            [0.7871684267473 +/- 7...e-14] + [0.2749254173721 +/- 9...e-14]*I
-             sage: CBF(2+3*I).hypergeometric([1/4,1/3],[1/2],regularized=True)
--            [0.4441122268685 +/- 3.96e-14] + [0.1551100567338 +/- 5.75e-14]*I
-+            [0.4441122268685 +/- 3...e-14] + [0.1551100567338 +/- 5...e-14]*I
- 
-             sage: CBF(5).hypergeometric([2,3], [-5])
-             nan + nan*I
-@@ -4041,9 +4042,9 @@ cdef class ComplexBall(RingElement):
- 
-             sage: phi = CBF(1,1)
-             sage: (CBF.pi()/2).elliptic_e_inc(phi)
--            [1.283840957898 +/- 3.23e-13] + [-0.5317843366915 +/- 7.79e-14]*I
-+            [1.283840957898 +/- 3...e-13] + [-0.5317843366915 +/- 7...e-14]*I
-             sage: phi.elliptic_e()
--            [1.2838409578982 +/- 5.90e-14] + [-0.5317843366915 +/- 3.35e-14]*I
-+            [1.2838409578982 +/- 5...e-14] + [-0.5317843366915 +/- 3...e-14]*I
- 
-             sage: phi = CBF(2, 3/7)
-             sage: (CBF.pi()/2).elliptic_e_inc(phi)
-@@ -4312,8 +4313,7 @@ cdef class ComplexBall(RingElement):
-             sage: CBF(10).laguerre_L(3, 2)
-             [-6.666666666667 +/- 4.15e-13]
-             sage: CBF(5,7).laguerre_L(CBF(2,3), CBF(1,-2))
--            [5515.315030271 +/- 4.37e-10] + [-12386.942845271 +/- 5.47e-10]*I
--
-+            [5515.315030271 +/- 4...e-10] + [-12386.942845271 +/- 5...e-10]*I
-         """
-         cdef ComplexBall my_n = self._parent.coerce(n)
-         cdef ComplexBall my_m = self._parent.coerce(m)
-@@ -4357,9 +4357,9 @@ cdef class ComplexBall(RingElement):
-         EXAMPLES::
- 
-             sage: CBF(1/2).legendre_P(5)
--            [0.08984375000000000 +/- 4.5...e-18]
-+            [0.0898437500000000 +/- 7...e-17]
-             sage: CBF(1,2).legendre_P(CBF(2,3), CBF(0,1))
--            [0.10996180744364 +/- 7.45e-15] + [0.14312767804055 +/- 8.38e-15]*I
-+            [0.10996180744364 +/- 7.12e-15] + [0.14312767804055 +/- 8.07e-15]*I
-             sage: CBF(-10).legendre_P(5, 325/100)
-             [-22104403.487377 +/- 6.81e-7] + [53364750.687392 +/- 7.25e-7]*I
-             sage: CBF(-10).legendre_P(5, 325/100, type=3)
-@@ -4393,9 +4393,9 @@ cdef class ComplexBall(RingElement):
-             sage: CBF(1/2).legendre_Q(5)
-             [0.55508089057168 +/- 2.79e-15]
-             sage: CBF(1,2).legendre_Q(CBF(2,3), CBF(0,1))
--            [0.167678710 +/- 4.60e-10] + [-0.161558598 +/- 7.47e-10]*I
-+            [0.167678710 +/- 3.91e-10] + [-0.161558598 +/- 6.77e-10]*I
-             sage: CBF(-10).legendre_Q(5, 325/100)
--            [-83825154.36008 +/- 4.94e-6] + [-34721515.80396 +/- 5.40e-6]*I
-+            [-83825154.36008 +/- 5.02e-6] + [-34721515.80396 +/- 5.42e-6]*I
-             sage: CBF(-10).legendre_Q(5, 325/100, type=3)
-             [-4.797306921692e-6 +/- 6.82e-19] + [-4.797306921692e-6 +/- 6.57e-19]*I
- 
-diff --git a/src/sage/rings/polynomial/polynomial_complex_arb.pyx b/src/sage/rings/polynomial/polynomial_complex_arb.pyx
-index c436d4705b..ef611a566b 100644
---- a/src/sage/rings/polynomial/polynomial_complex_arb.pyx
-+++ b/src/sage/rings/polynomial/polynomial_complex_arb.pyx
-@@ -543,7 +543,7 @@ cdef class Polynomial_complex_arb(Polynomial):
-             sage: (1 - x/3).inverse_series_trunc(3)
-             ([0.1111111111111111 +/- 5.99e-17])*x^2 + ([0.3333333333333333 +/- 7.04e-17])*x + 1.000000000000000
-             sage: x.inverse_series_trunc(1)
--            [+/- inf]
-+            nan
-             sage: Pol(0).inverse_series_trunc(2)
-             (nan + nan*I)*x + nan + nan*I
- 
-@@ -671,7 +671,7 @@ cdef class Polynomial_complex_arb(Polynomial):
-             sage: pol._sqrt_series(2)
-             ([+/- 7.51e-3] + [+/- 0.501]*I)*x + [+/- 5.01e-3] + [+/- 1.01]*I
-             sage: x._sqrt_series(2)
--            ([+/- inf] + [+/- inf]*I)*x
-+            (nan + nan*I)*x
-         """
-         cdef Polynomial_complex_arb res = self._new()
-         if n < 0:
-diff --git a/src/sage/rings/real_arb.pyx b/src/sage/rings/real_arb.pyx
-index c9f68e38d7..76e3037a9a 100644
---- a/src/sage/rings/real_arb.pyx
-+++ b/src/sage/rings/real_arb.pyx
-@@ -161,7 +161,7 @@ values and should be preferred::
- 
-     sage: RBF(NaN) < RBF(infinity)
-     False
--    sage: 1/RBF(0) <= RBF(infinity)
-+    sage: RBF(0).add_error(infinity) <= RBF(infinity)
-     True
- 
- TESTS::
-@@ -252,6 +252,8 @@ cdef void mpfi_to_arb(arb_t target, const mpfi_t source, const long precision):
-         (+infinity, +infinity)
-         sage: RBF(RIF(-infinity)).endpoints()
-         (-infinity, -infinity)
-+        sage: RBF(RIF(-infinity, infinity)).endpoints()
-+        (-infinity, +infinity)
-         sage: RIF(RBF(infinity)).endpoints()
-         (+infinity, +infinity)
-         sage: RIF(RBF(-infinity)).endpoints()
-@@ -266,10 +268,11 @@ cdef void mpfi_to_arb(arb_t target, const mpfi_t source, const long precision):
-     if _do_sig(precision): sig_on()
-     mpfi_get_left(left, source)
-     mpfi_get_right(right, source)
--    arb_set_interval_mpfr(target, left, right, precision)
--    # Work around weakness of arb_set_interval_mpfr(tgt, inf, inf)
--    if mpfr_equal_p(left, right):
--        mag_zero(arb_radref(target))
-+    if mpfr_inf_p(left) and mpfr_inf_p(right) and mpfr_sgn(left) < 0 < mpfr_sgn(right):
-+        # Work around a weakness of arb_set_interval_mpfr(tgt, -inf, inf)
-+        arb_zero_pm_inf(target)
-+    else:
-+        arb_set_interval_mpfr(target, left, right, precision)
-     if _do_sig(precision): sig_off()
- 
-     mpfr_clear(left)
-@@ -649,17 +652,15 @@ class RealBallField(UniqueRepresentation, Field):
-         EXAMPLES::
- 
-             sage: RBF.some_elements()
--            [1.000000000000000,
--            [0.3333333333333333 +/- 7.04e-17],
-+            [0, 1.000000000000000, [0.3333333333333333 +/- 7.04e-17],
-             [-4.733045976388941e+363922934236666733021124 +/- 3.46e+363922934236666733021108],
--            [+/- inf],
--            [+/- inf],
--            nan]
-+            [+/- inf], [+/- inf], [+/- inf], nan]
-         """
-         import sage.symbolic.constants
--        return [self(1), self(1)/3,
-+        inf = self(sage.rings.infinity.Infinity)
-+        return [self(0), self(1), self(1)/3,
-                 -self(2)**(Integer(2)**80),
--                self(sage.rings.infinity.Infinity), ~self(0),
-+                inf, -inf, self.zero().add_error(inf),
-                 self.element_class(self, sage.symbolic.constants.NotANumber())]
- 
-     def _sum_of_products(self, terms):
-@@ -881,7 +882,7 @@ class RealBallField(UniqueRepresentation, Field):
-             sage: RBF.gamma(5)
-             24.00000000000000
-             sage: RBF.gamma(10**20)
--            [+/- 5.92e+1956570551809674821757]
-+            [+/- 5.50e+1956570552410610660600]
-             sage: RBF.gamma(1/3)
-             [2.678938534707747 +/- 8.99e-16]
-             sage: RBF.gamma(-5)
-@@ -2247,7 +2248,7 @@ cdef class RealBall(RingElement):
-             sage: inf = RBF(+infinity)
-             sage: other_inf = RBF(+infinity, 42.r)
-             sage: neg_inf = RBF(-infinity)
--            sage: extended_line = 1/RBF(0)
-+            sage: extended_line = RBF(0).add_error(infinity)
-             sage: exact_nan = inf - inf
-             sage: exact_nan.mid(), exact_nan.rad()
-             (NaN, 0.00000000)
-@@ -2659,7 +2660,7 @@ cdef class RealBall(RingElement):
-             sage: ~RBF(5)
-             [0.2000000000000000 +/- 4.45e-17]
-             sage: ~RBF(0)
--            [+/- inf]
-+            nan
-             sage: RBF(RIF(-0.1,0.1))
-             [+/- 0.101]
- 
-@@ -2739,7 +2740,7 @@ cdef class RealBall(RingElement):
-             sage: RBF(pi)/RBF(e)
-             [1.155727349790922 +/- 8.43e-16]
-             sage: RBF(2)/RBF(0)
--            [+/- inf]
-+            nan
-         """
-         cdef RealBall res = self._new()
-         if _do_sig(prec(self)): sig_on()
-@@ -2765,7 +2766,7 @@ cdef class RealBall(RingElement):
-             sage: RBF(-1)^(1/3)
-             nan
-             sage: RBF(0)^(-1)
--            [+/- inf]
-+            nan
-             sage: RBF(-e)**RBF(pi)
-             nan
- 
-@@ -3129,7 +3130,7 @@ cdef class RealBall(RingElement):
-             sage: RBF(1).tan()
-             [1.557407724654902 +/- 3.26e-16]
-             sage: RBF(pi/2).tan()
--            [+/- inf]
-+            nan
-         """
-         cdef RealBall res = self._new()
-         if _do_sig(prec(self)): sig_on()
-@@ -3146,7 +3147,7 @@ cdef class RealBall(RingElement):
-             sage: RBF(1).cot()
-             [0.642092615934331 +/- 4.79e-16]
-             sage: RBF(pi).cot()
--            [+/- inf]
-+            nan
-         """
-         cdef RealBall res = self._new()
-         if _do_sig(prec(self)): sig_on()
-@@ -3257,7 +3258,7 @@ cdef class RealBall(RingElement):
-             sage: RBF(1).coth()
-             [1.313035285499331 +/- 4.97e-16]
-             sage: RBF(0).coth()
--            [+/- inf]
-+            nan
-         """
-         cdef RealBall res = self._new()
-         if _do_sig(prec(self)): sig_on()
diff --git a/pkgs/applications/science/math/sage/patches/known-padics-bug.patch b/pkgs/applications/science/math/sage/patches/known-padics-bug.patch
new file mode 100644
index 000000000000..bdccd73e0ce1
--- /dev/null
+++ b/pkgs/applications/science/math/sage/patches/known-padics-bug.patch
@@ -0,0 +1,15 @@
+diff --git a/build/pkgs/openblas/package-version.txt b/build/pkgs/openblas/package-version.txt
+index 3bc45c25d4..7c7c224887 100644
+--- a/src/sage/schemes/elliptic_curves/padics.py
++++ b/src/sage/schemes/elliptic_curves/padics.py
+@@ -292,8 +292,8 @@ def padic_regulator(self, p, prec=20, height=None, check_hypotheses=True):
+ 
+         sage: max_prec = 30    # make sure we get past p^2    # long time
+         sage: full = E.padic_regulator(5, max_prec)           # long time
+-        sage: for prec in range(1, max_prec):                 # long time
+-        ....:     assert E.padic_regulator(5, prec) == full   # long time
++        sage: for prec in range(1, max_prec):                 # known bug (#25969) # long time
++        ....:     assert E.padic_regulator(5, prec) == full   # known bug (#25969) # long time
+ 
+     A case where the generator belongs to the formal group already
+     (:trac:`3632`)::
diff --git a/pkgs/applications/science/math/sage/patches/maxima-5.41.0-doctests.patch b/pkgs/applications/science/math/sage/patches/maxima-5.41.0-doctests.patch
deleted file mode 100644
index fad434e52ada..000000000000
--- a/pkgs/applications/science/math/sage/patches/maxima-5.41.0-doctests.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-diff --git a/src/sage/interfaces/maxima_abstract.py b/src/sage/interfaces/maxima_abstract.py
-index 961c20aaac..3d601d8939 100644
---- a/src/sage/interfaces/maxima_abstract.py
-+++ b/src/sage/interfaces/maxima_abstract.py
-@@ -1743,7 +1743,7 @@ class MaximaAbstractElement(ExtraTabCompletion, InterfaceElement):
-             sage: y,d = var('y,d')
-             sage: f = function('f')
-             sage: latex(maxima(derivative(f(x*y), x)))
--            \left(\left.{{{\it \partial}}\over{{\it \partial}\,  {\it t_0}}}\,f\left({\it t_0}\right)  \right|_{{\it t_0}={\it x}\,  {\it y}}\right)\,{\it y}
-+            \left(\left.{{{\it \partial}}\over{{\it \partial}\,  {\it t}_{0}}}\,f\left({\it t}_{0}\right)  \right|_{{\it t}_{0}={\it x}\,  {\it y}}\right)\,{\it y}
-             sage: latex(maxima(derivative(f(x,y,d), d,x,x,y)))
-             {{{\it \partial}^4}\over{{\it \partial}\,{\it d}\,  {\it \partial}\,{\it x}^2\,{\it \partial}\,  {\it y}}}\,f\left({\it x} ,  {\it y} , {\it d}\right)
-             sage: latex(maxima(d/(d-2)))
-diff --git a/src/sage/manifolds/differentiable/metric.py b/src/sage/manifolds/differentiable/metric.py
-index 3cd6ad3235..1e18af1a6b 100644
---- a/src/sage/manifolds/differentiable/metric.py
-+++ b/src/sage/manifolds/differentiable/metric.py
-@@ -993,7 +993,7 @@ class PseudoRiemannianMetric(TensorField):
-              2-dimensional differentiable manifold S^2
-             sage: g.riemann()[:]
-             [[[[0, 0], [0, 0]], [[0, sin(th)^2], [-sin(th)^2, 0]]],
--             [[[0, (cos(th)^2 - 1)/sin(th)^2], [1, 0]], [[0, 0], [0, 0]]]]
-+             [[[0, -1], [1, 0]], [[0, 0], [0, 0]]]]
- 
-         In dimension 2, the Riemann tensor can be expressed entirely in terms of
-         the Ricci scalar `r`:
-diff --git a/src/sage/symbolic/expression.pyx b/src/sage/symbolic/expression.pyx
-index dfb8751467..27402e54ab 100644
---- a/src/sage/symbolic/expression.pyx
-+++ b/src/sage/symbolic/expression.pyx
-@@ -7154,7 +7154,7 @@ cdef class Expression(CommutativeRingElement):
-             sage: ex = lcm(sin(x)^2 - 1, sin(x)^2 + sin(x)); ex
-             (sin(x)^2 + sin(x))*(sin(x)^2 - 1)/(sin(x) + 1)
-             sage: ex.simplify_full()
--            -cos(x)^2*sin(x)
-+            sin(x)^3 - sin(x)
- 
-         TESTS:
- 
-@@ -10004,7 +10004,7 @@ cdef class Expression(CommutativeRingElement):
- 
-             sage: f=tan(3*x)
-             sage: f.simplify_trig()
--            (4*cos(x)^2 - 1)*sin(x)/(4*cos(x)^3 - 3*cos(x))
-+            -(4*cos(x)^2 - 1)*sin(x)/(4*cos(x)*sin(x)^2 - cos(x))
-             sage: f.simplify_trig(False)
-             sin(3*x)/cos(3*x)
- 
diff --git a/pkgs/applications/science/math/sage/patches/pari-no-threads.patch b/pkgs/applications/science/math/sage/patches/pari-no-threads.patch
new file mode 100644
index 000000000000..13b47dbdd31b
--- /dev/null
+++ b/pkgs/applications/science/math/sage/patches/pari-no-threads.patch
@@ -0,0 +1,18 @@
+diff --git a/src/sage/libs/pari/__init__.py b/src/sage/libs/pari/__init__.py
+index e451766474..77eda66097 100644
+--- a/src/sage/libs/pari/__init__.py
++++ b/src/sage/libs/pari/__init__.py
+@@ -205,6 +205,13 @@ def _get_pari_instance():
+     # messages in Sage.
+     P.default("debugmem", 0)
+ 
++    # Make sure pari doesn't use threads, regardless of how it was compiled.
++    # Threads cause some doctest failures (memory issues). Those could probably
++    # be solved without disabling threads. But that would require figuring out
++    # some sensible values for `threadsizemax`. See
++    # https://pari.math.u-bordeaux.fr/dochtml/html/GP_defaults.html
++    P.default("nbthreads", 1)
++
+     return P
+ 
+ pari = _get_pari_instance()
diff --git a/pkgs/applications/science/math/sage/patches/pynac-0.7.22.patch b/pkgs/applications/science/math/sage/patches/pynac-0.7.22.patch
deleted file mode 100644
index 22f274d608d4..000000000000
--- a/pkgs/applications/science/math/sage/patches/pynac-0.7.22.patch
+++ /dev/null
@@ -1,479 +0,0 @@
-diff --git a/src/sage/calculus/calculus.py b/src/sage/calculus/calculus.py
-index 3a417d9d5c..fadaadbaf6 100644
---- a/src/sage/calculus/calculus.py
-+++ b/src/sage/calculus/calculus.py
-@@ -231,7 +231,7 @@ Another example::
-     sage: f(x=3)
-     arcsinh(1)
-     sage: f.derivative(x)
--    1/3/sqrt(1/9*x^2 + 1)
-+    1/sqrt(x^2 + 9)
- 
- We compute the length of the parabola from 0 to 2::
- 
-@@ -1509,8 +1509,8 @@ def laplace(ex, t, s, algorithm='maxima'):
-     Testing SymPy::
- 
-         sage: laplace(t^n, t, s, algorithm='sympy')
--        (s^(-n)*gamma(n + 1)/s, 0, -re(n) < 1)
--        
-+        (gamma(n + 1)/(s*s^n), 0, -re(n) < 1)
-+
-     Testing Maxima::
- 
-         sage: laplace(t^n, t, s, algorithm='maxima')
-diff --git a/src/sage/functions/hypergeometric.py b/src/sage/functions/hypergeometric.py
-index 1fc2db5c94..f3e49b9cdb 100644
---- a/src/sage/functions/hypergeometric.py
-+++ b/src/sage/functions/hypergeometric.py
-@@ -34,7 +34,7 @@ Simplification (note that ``simplify_full`` does not yet call
-     sage: a.simplify_hypergeometric()
-     1/((-e^x + 1)^e^x)
-     sage: a.simplify_hypergeometric(algorithm='sage')
--    (-e^x + 1)^(-e^x)
-+    1/((-e^x + 1)^e^x)
- 
- Equality testing::
- 
-@@ -145,7 +145,7 @@ Series expansions of confluent hypergeometric functions::
- 
-     sage: hypergeometric_M(2, 2, x).series(x, 3)
-     1 + 1*x + 1/2*x^2 + Order(x^3)
--    sage: hypergeometric_U(2, 2, x).series(x == 3, 100).subs(x=1).n()
-+    sage: hypergeometric_U(2, 2, x).series(x == 3, 100).subs(x=1).n() # known bug (see :trac:`25688`)
-     0.403652637676806
-     sage: hypergeometric_U(2, 2, 1).n()
-     0.403652637676806
-@@ -773,7 +773,7 @@ def closed_form(hyp):
-         sage: closed_form(hypergeometric([], [], z))
-         e^z
-         sage: closed_form(hypergeometric([a], [], z))
--        (-z + 1)^(-a)
-+        1/((-z + 1)^a)
-         sage: closed_form(hypergeometric([1, 1, 2], [1, 1], z))
-         (z - 1)^(-2)
-         sage: closed_form(hypergeometric([2, 3], [1], x))
-@@ -1121,7 +1121,7 @@ class Hypergeometric_U(BuiltinFunction):
-                 sage: var('a b z')
-                 (a, b, z)
-                 sage: hypergeometric_U(a, b, z).generalized()
--                z^(-a)*hypergeometric((a, a - b + 1), (), -1/z)
-+                hypergeometric((a, a - b + 1), (), -1/z)/z^a
-                 sage: hypergeometric_U(1, 3, 1/2).generalized()
-                 2*hypergeometric((1, -1), (), -2)
-                 sage: hypergeometric_U(3, I, 2).generalized()
-diff --git a/src/sage/functions/log.py b/src/sage/functions/log.py
-index 75d1bf8060..61968582af 100644
---- a/src/sage/functions/log.py
-+++ b/src/sage/functions/log.py
-@@ -518,17 +518,17 @@ class Function_polylog(GinacFunction):
- 
-             sage: BF = RealBallField(100)
-             sage: polylog(2, BF(1/3))
--            [0.36621322997706348761674629766 +/- 4.51e-30]
-+            [0.36621322997706348761674629766... +/- ...]
-             sage: polylog(2, BF(4/3))
--            nan
-+            [2.27001825336107090380391448586 +/- 5.64e-30] + [-0.90377988538400159956755721265 +/- 8.39e-30]*I
-             sage: parent(_)
--            Real ball field with 100 bits of precision
-+            Complex ball field with 100 bits of precision
-             sage: polylog(2, CBF(1/3))
--            [0.366213229977063 +/- 5.85e-16]
-+            [0.366213229977063 +/- ...]
-             sage: parent(_)
-             Complex ball field with 53 bits of precision
-             sage: polylog(2, CBF(1))
--            [1.644934066848226 +/- 6.59e-16]
-+            [1.644934066848226 +/- ...]
-             sage: parent(_)
-             Complex ball field with 53 bits of precision
-         """
-diff --git a/src/sage/functions/trig.py b/src/sage/functions/trig.py
-index e7e7a311cd..1f2926d6c9 100644
---- a/src/sage/functions/trig.py
-+++ b/src/sage/functions/trig.py
-@@ -529,13 +529,8 @@ class Function_arcsin(GinacFunction):
-             arcsin
-             sage: asin(complex(1,1))
-             (0.6662394324925152+1.0612750619050357j)
--
--        Check that :trac:`22823` is fixed::
--
--            sage: bool(asin(SR(2.1)) == NaN)
--            True
--            sage: asin(SR(2.1)).is_real()
--            False
-+            sage: asin(SR(2.1))
-+            1.57079632679490 - 1.37285914424258*I
-         """
-         GinacFunction.__init__(self, 'arcsin', latex_name=r"\arcsin",
-                 conversions=dict(maxima='asin', sympy='asin', fricas="asin", giac="asin"))
-@@ -595,13 +590,8 @@ class Function_arccos(GinacFunction):
-             arccos
-             sage: acos(complex(1,1))
-             (0.9045568943023814-1.0612750619050357j)
--
--        Check that :trac:`22823` is fixed::
--
--            sage: bool(acos(SR(2.1)) == NaN)
--            True
--            sage: acos(SR(2.1)).is_real()
--            False
-+            sage: acos(SR(2.1))
-+            1.37285914424258*I
-         """
-         GinacFunction.__init__(self, 'arccos', latex_name=r"\arccos",
-                 conversions=dict(maxima='acos', sympy='acos', fricas='acos', giac='acos'))
-@@ -807,7 +797,7 @@ class Function_arcsec(GinacFunction):
-             sage: arcsec(2).n(100)
-             1.0471975511965977461542144611
-             sage: arcsec(1/2).n(100)
--            NaN
-+            1.3169578969248167086250463473*I
-             sage: RDF(arcsec(2))  # abs tol 1e-15
-             1.0471975511965976
-             sage: arcsec(1 + I)
-@@ -958,7 +948,9 @@ class Function_arctan2(GinacFunction):
-             sage: atan2(0,0,hold=True)
-             arctan2(0, 0)
-             sage: atan2(0,0,hold=True).n()
--            NaN
-+            Traceback (most recent call last):
-+            ...
-+            RuntimeError: atan2(): division by zero
- 
-         Check if :trac:`10062` is fixed, this was caused by
-         ``(I*I).is_positive()`` returning ``True``::
-diff --git a/src/sage/geometry/hyperbolic_space/hyperbolic_geodesic.py b/src/sage/geometry/hyperbolic_space/hyperbolic_geodesic.py
-index 3b5c8d1729..1c6b73a16c 100644
---- a/src/sage/geometry/hyperbolic_space/hyperbolic_geodesic.py
-+++ b/src/sage/geometry/hyperbolic_space/hyperbolic_geodesic.py
-@@ -1422,8 +1422,10 @@ class HyperbolicGeodesicUHP(HyperbolicGeodesic):
-         expressions do not generate runtime errors. ::
- 
-             sage: g=HyperbolicPlane().UHP().get_geodesic(-1+I,1+I)
--            sage: g.midpoint()
--            Point in UHP 1/2*(sqrt(2)*e^(1/2*arccosh(3)) - sqrt(2) + (I - 1)*e^(1/2*arccosh(3)) + I - 1)/((1/4*I - 1/4)*sqrt(2)*e^(1/2*arccosh(3)) - (1/4*I - 1/4)*sqrt(2) + 1/2*e^(1/2*arccosh(3)) + 1/2)
-+            sage: point = g.midpoint(); point
-+            Point in UHP -1/2*(sqrt(2)*...
-+            sage: QQbar(point.coordinates()).radical_expression()
-+            I*sqrt(2)
- 
-         Check that floating points remain floating points
-         in :meth:`midpoint` ::
-diff --git a/src/sage/interfaces/fricas.py b/src/sage/interfaces/fricas.py
-index 82aae78e37..8501ea2a18 100644
---- a/src/sage/interfaces/fricas.py
-+++ b/src/sage/interfaces/fricas.py
-@@ -1084,14 +1084,14 @@ class FriCASElement(ExpectElement):
-              0.451026811796262,
-              0.732815101786507,
-              0.837981225008390,
--             NaN,
--             NaN,
-+             1.57079632679490 - 0.467145308103262*I,
-+             0.467145308103262*I,
-              1.11976951499863,
-              0.451026811796262,
-              0.732815101786507,
-              0.837981225008390,
--             NaN,
--             NaN]
-+             1.57079632679490 - 0.467145308103262*I,
-+             0.467145308103262*I]
-             sage: l = [tanh, sinh, cosh, coth, sech, csch, asinh, acosh, atanh, acoth, asech, acsch, arcsinh, arccosh, arctanh, arccoth, arcsech, arccsch]
-             sage: [f(x)._fricas_().sage().subs(x=0.9) for f in l]               # optional - fricas
-             [0.716297870199024,
-diff --git a/src/sage/libs/pynac/pynac.pyx b/src/sage/libs/pynac/pynac.pyx
-index 9e9d8f664b..e3406f007e 100644
---- a/src/sage/libs/pynac/pynac.pyx
-+++ b/src/sage/libs/pynac/pynac.pyx
-@@ -1824,7 +1824,7 @@ cdef py_atan2(x, y):
-         sage: atan2(CC(I), CC(I+1))
-         0.553574358897045 + 0.402359478108525*I
-         sage: atan2(CBF(I), CBF(I+1))
--        [0.55357435889705 +/- 5.58e-15] + [0.402359478108525 +/- 7.11e-16]*I
-+        [0.55357435889705 +/- ...] + [0.402359478108525 +/- ...]*I
- 
-     Check that :trac:`23776` is fixed and RDF input gives real output::
- 
-diff --git a/src/sage/matrix/matrix_symbolic_dense.pyx b/src/sage/matrix/matrix_symbolic_dense.pyx
-index 46a15e53eb..7a0beb437b 100644
---- a/src/sage/matrix/matrix_symbolic_dense.pyx
-+++ b/src/sage/matrix/matrix_symbolic_dense.pyx
-@@ -200,7 +200,7 @@ cdef class Matrix_symbolic_dense(Matrix_generic_dense):
-             sage: eval, [evec], mult = es[0]
-             sage: delta = eval*evec - evec*A
-             sage: abs(abs(delta)) < 1e-10
--            sqrt(9/25*((2*sqrt(6) - 3)*(sqrt(6) - 2) + 7*sqrt(6) - 18)^2 + 9/25*((sqrt(6) - 2)*(sqrt(6) - 4) + 6*sqrt(6) - 14)^2) < (1.00000000000000e-10)
-+            3/5*sqrt(((2*sqrt(6) - 3)*(sqrt(6) - 2) + 7*sqrt(6) - 18)^2 + ((sqrt(6) - 2)*(sqrt(6) - 4) + 6*sqrt(6) - 14)^2) < (1.00000000000000e-10)
-             sage: abs(abs(delta)).n() < 1e-10
-             True
- 
-diff --git a/src/sage/modules/matrix_morphism.py b/src/sage/modules/matrix_morphism.py
-index 17a1d6e290..03892ceec0 100644
---- a/src/sage/modules/matrix_morphism.py
-+++ b/src/sage/modules/matrix_morphism.py
-@@ -214,9 +214,9 @@ class MatrixMorphism_abstract(sage.categories.morphism.Morphism):
-             sage: f((1, 0))
-             Traceback (most recent call last):
-             ...
--            TypeError: Unable to coerce entries (=[1.00000000000000*I, 0.000000000000000]) to coefficients in Real Field with 53 bits of precision
-+            TypeError: Unable to coerce entries (=[1.00000000000000*I, 0]) to coefficients in Real Field with 53 bits of precision
-             sage: f((1, 0), coerce=False)
--            (1.00000000000000*I, 0.000000000000000)
-+            (1.00000000000000*I, 0)
- 
-         """
-         if self.domain().is_ambient():
-diff --git a/src/sage/plot/plot.py b/src/sage/plot/plot.py
-index 77cdeb8c46..e501e74036 100644
---- a/src/sage/plot/plot.py
-+++ b/src/sage/plot/plot.py
-@@ -2061,7 +2061,7 @@ def _plot(funcs, xrange, parametric=False,
-     plot properly (:trac:`13246`)::
- 
-         sage: parametric_plot((x, arcsec(x)), (x, -2, 2))
--        Graphics object consisting of 1 graphics primitive
-+        Graphics object consisting of 2 graphics primitives
- 
-     """
-     from sage.plot.colors import Color
-diff --git a/src/sage/repl/display/formatter.py b/src/sage/repl/display/formatter.py
-index 8ce2e839d7..948207c95e 100644
---- a/src/sage/repl/display/formatter.py
-+++ b/src/sage/repl/display/formatter.py
-@@ -25,11 +25,11 @@ generally, all sage expression as an ASCII art object::
-     sage: shell = get_test_shell()
-     sage: shell.run_cell('%display ascii_art')
-     sage: shell.run_cell('integral(x^2/pi^x, x)')
--     / 2    2                      \  -x*log(pi)
--    -\x *log (pi) + 2*x*log(pi) + 2/*e
--    ---------------------------------------------
--                         3
--                      log (pi)
-+       -x / 2    2                      \ 
-+    -pi  *\x *log (pi) + 2*x*log(pi) + 2/ 
-+    --------------------------------------
-+                     3                   
-+                   log (pi)               
-     sage: shell.run_cell("i = var('i')")
-     sage: shell.run_cell('sum(i*x^i, i, 0, 10)')
-         10      9      8      7      6      5      4      3      2
-diff --git a/src/sage/rings/asymptotic/asymptotics_multivariate_generating_functions.py b/src/sage/rings/asymptotic/asymptotics_multivariate_generating_functions.py
-index d8ebbf4f76..8c60f65e99 100644
---- a/src/sage/rings/asymptotic/asymptotics_multivariate_generating_functions.py
-+++ b/src/sage/rings/asymptotic/asymptotics_multivariate_generating_functions.py
-@@ -151,8 +151,8 @@ A multiple point example (Example 6.5 of [RaWi2012]_)::
-      [(x + 2*y - 1, 1), (2*x + y - 1, 1)])
-     sage: F1 = decomp[1]
-     sage: F1.asymptotics(p, alpha, 2)
--    (-3*((2*a^2 - 5*a*b + 2*b^2)*r^2 + (a + b)*r + 3)*((1/3)^(-a)*(1/3)^(-b))^r,
--     (1/3)^(-a)*(1/3)^(-b), -3*(2*a^2 - 5*a*b + 2*b^2)*r^2 - 3*(a + b)*r - 9)
-+    (-3*((2*a^2 - 5*a*b + 2*b^2)*r^2 + (a + b)*r + 3)*(1/((1/3)^a*(1/3)^b))^r,
-+     1/((1/3)^a*(1/3)^b), -3*(2*a^2 - 5*a*b + 2*b^2)*r^2 - 3*(a + b)*r - 9)
-     sage: alpha = [4, 3]
-     sage: decomp =  F.asymptotic_decomposition(alpha)
-     sage: F1 = decomp[1]
-@@ -2159,7 +2159,7 @@ class FractionWithFactoredDenominator(RingElement):
-             sage: p = {x: 1/3, y: 1/3}
-             sage: alpha = (var('a'), var('b'))
-             sage: F.asymptotics_multiple(p, alpha, 2, var('r')) # long time
--            (3*((1/3)^(-a)*(1/3)^(-b))^r*e^(2/3), (1/3)^(-a)*(1/3)^(-b), 3*e^(2/3))
-+            (3*(1/((1/3)^a*(1/3)^b))^r*e^(2/3), 1/((1/3)^a*(1/3)^b), 3*e^(2/3))
-         """
-         from itertools import product
-         from sage.calculus.functions import jacobian
-diff --git a/src/sage/stats/basic_stats.py b/src/sage/stats/basic_stats.py
-index 16a268a02c..5fd244e93b 100644
---- a/src/sage/stats/basic_stats.py
-+++ b/src/sage/stats/basic_stats.py
-@@ -183,7 +183,7 @@ def std(v, bias=False):
-         sage: std([])
-         NaN
-         sage: std([I, sqrt(2), 3/5])
--        sqrt(1/450*(10*sqrt(2) - 5*I - 3)^2 + 1/450*(5*sqrt(2) - 10*I + 3)^2 + 1/450*(5*sqrt(2) + 5*I - 6)^2)
-+        1/15*sqrt(1/2)*sqrt((10*sqrt(2) - 5*I - 3)^2 + (5*sqrt(2) - 10*I + 3)^2 + (5*sqrt(2) + 5*I - 6)^2)
-         sage: std([RIF(1.0103, 1.0103), RIF(2)])
-         0.6998235813403261?
-         sage: import numpy
-diff --git a/src/sage/symbolic/expression.pyx b/src/sage/symbolic/expression.pyx
-index ab4c05de3a..60f0dc549a 100644
---- a/src/sage/symbolic/expression.pyx
-+++ b/src/sage/symbolic/expression.pyx
-@@ -622,7 +622,7 @@ cdef class Expression(CommutativeRingElement):
-             sage: x^(-5)
-             x^(-5)
-             sage: x^(-y)
--            x^(-y)
-+            1/(x^y)
-             sage: 2*x^(-1)
-             2/x
-             sage: i*x
-@@ -3621,14 +3621,14 @@ cdef class Expression(CommutativeRingElement):
-             sage: repl_dict = {b_0: b_0, b_3: b_1, b_2: b_3, b_1: b_2}
-             sage: P = precomp.substitute(repl_dict)
-             sage: P.expand()
--            -2^(-b_0)*2^(-b_2)*2^b_3 - 2^b_0*2^(-b_2)*2^b_3 -
--            2^(-b_0)*2^b_2*2^b_3 + 2^b_0*2^b_2*2^b_3 - 2*2^(-b_0)*2^(-b_2)
--            - 2*2^b_0*2^(-b_2) - 2*2^(-b_0)*2^b_2 + 2*2^b_0*2^b_2 +
--            2^(-b_0)*2^b_3 + 2^b_0*2^b_3 + 2^(-b_2)*2^b_3 + 2^b_2*2^b_3 +
--            2*2^(-b_0) + 2*2^b_0 + 2*2^(-b_2) + 2*2^b_2 - 9*2^b_3 -
--            2^(-b_0)*2^(-b_2)/2^b_3 - 2^b_0*2^(-b_2)/2^b_3 -
--            2^(-b_0)*2^b_2/2^b_3 + 2^b_0*2^b_2/2^b_3 + 2^(-b_0)/2^b_3 +
--            2^b_0/2^b_3 + 2^(-b_2)/2^b_3 + 2^b_2/2^b_3 - 9/2^b_3 - 18
-+            2^b_0*2^b_2*2^b_3 + 2*2^b_0*2^b_2 + 2^b_0*2^b_3 + 2^b_2*2^b_3 +
-+            2*2^b_0 + 2*2^b_2 - 9*2^b_3 + 2^b_0*2^b_2/2^b_3 -
-+            2^b_0*2^b_3/2^b_2 - 2^b_2*2^b_3/2^b_0 - 2*2^b_0/2^b_2 -
-+            2*2^b_2/2^b_0 + 2^b_0/2^b_3 + 2^b_2/2^b_3 + 2^b_3/2^b_0 +
-+            2^b_3/2^b_2 + 2/2^b_0 + 2/2^b_2 - 2^b_0/(2^b_2*2^b_3) -
-+            2^b_2/(2^b_0*2^b_3) - 9/2^b_3 - 2^b_3/(2^b_0*2^b_2) -
-+            2/(2^b_0*2^b_2) + 1/(2^b_0*2^b_3) + 1/(2^b_2*2^b_3) -
-+            1/(2^b_0*2^b_2*2^b_3) - 18
- 
-             sage: _0,b_1,b_2=var('b_0,b_1,b_2')
-             sage: f = 1/27*b_2^2/(2^b_2)^2 + 1/27*b_1^2/(2^b_1)^2 + \
-@@ -3809,7 +3809,7 @@ cdef class Expression(CommutativeRingElement):
- 
-             sage: x = SR.symbol('x', domain='real')
-             sage: (x^3)^(1/3)
--            (x^3)^(1/3)
-+            x
-             sage: (x^4)^(1/4)
-             abs(x)
-             sage: (x^8)^(1/4)
-@@ -3872,7 +3872,7 @@ cdef class Expression(CommutativeRingElement):
-             sage: 2^(x/log(2))
-             e^x
-             sage: 2^(-x^2/2/log(2))
--            e^(-1/2*x^2)
-+            1/e^(1/2*x^2)
-             sage: x^(x/log(x))
-             x^(x/log(x))
-             sage: assume(x > 0)
-@@ -4816,18 +4816,24 @@ cdef class Expression(CommutativeRingElement):
-             sage: ((x+y)^(x+y)).match(w0^w0)
-             {$0: x + y}
-             sage: t = ((a+b)*(a+c)).match((a+w0)*(a+w1))
--            sage: t[w0], t[w1]
--            (c, b)
-+            sage: set([t[w0], t[w1]]) == set([b, c])
-+            True
-             sage: ((a+b)*(a+c)).match((w0+b)*(w0+c))
-             {$0: a}
-             sage: t = ((a+b)*(a+c)).match((w0+w1)*(w0+w2))
--            sage: t[w0], t[w1], t[w2]
--            (a, c, b)
--            sage: print(((a+b)*(a+c)).match((w0+w1)*(w1+w2)))
--            None
-+            sage: t[w0]
-+            a
-+            sage: set([t[w1], t[w2]]) == set([b, c])
-+            True
-+            sage: t = ((a+b)*(a+c)).match((w0+w1)*(w1+w2))
-+            sage: t[w1]
-+            a
-+            sage: set([t[w0], t[w2]]) == set([b, c])
-+            True
-             sage: t = (a*(x+y)+a*z+b).match(a*w0+w1)
--            sage: t[w0], t[w1]
--            (x + y, a*z + b)
-+            sage: s = set([t[w0], t[w1]])
-+            sage: s == set([x+y, a*z+b]) or s == set([z, a*(x+y)+b])
-+            True
-             sage: print((a+b+c+d+f+g).match(c))
-             None
-             sage: (a+b+c+d+f+g).has(c)
-@@ -4836,7 +4842,7 @@ cdef class Expression(CommutativeRingElement):
-             {$0: a + b + d + f + g}
-             sage: (a+b+c+d+f+g).match(c+g+w0)
-             {$0: a + b + d + f}
--            sage: (a+b).match(a+b+w0)
-+            sage: (a+b).match(a+b+w0) # known bug
-             {$0: 0}
-             sage: print((a*b^2).match(a^w0*b^w1))
-             None
-@@ -5009,7 +5015,7 @@ cdef class Expression(CommutativeRingElement):
-             a^3 + b^3 + (x + y)^3
- 
-             sage: t.subs(w0 == w0^2)
--            (x^2 + y^2)^18 + a^16 + b^16
-+            a^8 + b^8 + (x^2 + y^2)^6
- 
-             sage: t.subs(a == b, b == c)
-             (x + y)^3 + b^2 + c^2
-@@ -8392,9 +8398,13 @@ cdef class Expression(CommutativeRingElement):
-             sage: SR(I).arctan2(1)
-             arctan2(I, 1)
-             sage: SR(CDF(0,1)).arctan2(1)
--            NaN + +infinity*I
--            sage: SR(1).arctan2(CDF(0,1))   # known bug
--            0.7853981633974484 - 19.012501686914433*I
-+            Traceback (most recent call last):
-+            ...
-+            ValueError: power::eval(): division by zero
-+            sage: SR(1).arctan2(CDF(0,1))
-+            Traceback (most recent call last):
-+            ...
-+            ValueError: power::eval(): division by zero
- 
-             sage: arctan2(0,oo)
-             0
-@@ -8656,7 +8666,7 @@ cdef class Expression(CommutativeRingElement):
-             1/2*I*pi
-             sage: SR(1/2).arccosh()
-             arccosh(1/2)
--            sage: SR(CDF(1/2)).arccosh()  # rel tol 1e-15
-+            sage: SR(CDF(1/2)).arccosh() #  rel tol 1e-15
-             1.0471975511965976*I
-             sage: maxima('acosh(0.5)')
-             1.04719755119659...*%i
-@@ -11687,7 +11697,7 @@ cdef class Expression(CommutativeRingElement):
-             sage: a.solve(t)
-             []
-             sage: b = a.canonicalize_radical(); b
--            -23040.0*(-2.0*e^(1800*t) + 25.0*e^(900*t) - 32.0)*e^(-2400*t)
-+            (46080.0*e^(1800*t) - 576000.0*e^(900*t) + 737280.0)*e^(-2400*t)
-             sage: b.solve(t)
-             []
-             sage: b.solve(t, to_poly_solve=True)
-@@ -12163,14 +12173,14 @@ cdef class Expression(CommutativeRingElement):
- 
-             sage: (n,k,j)=var('n,k,j')
-             sage: sum(binomial(n,k)*binomial(k-1,j)*(-1)**(k-1-j),k,j+1,n)
--            -(-1)^(-j)*sum((-1)^k*binomial(k - 1, j)*binomial(n, k), k, j + 1, n)
-+            -(-1)^j*sum((-1)^k*binomial(k - 1, j)*binomial(n, k), k, j + 1, n)
-             sage: assume(j>-1)
-             sage: sum(binomial(n,k)*binomial(k-1,j)*(-1)**(k-1-j),k,j+1,n)
-             1
-             sage: forget()
-             sage: assume(n>=j)
-             sage: sum(binomial(n,k)*binomial(k-1,j)*(-1)**(k-1-j),k,j+1,n)
--            -(-1)^(-j)*sum((-1)^k*binomial(k - 1, j)*binomial(n, k), k, j + 1, n)
-+            -(-1)^j*sum((-1)^k*binomial(k - 1, j)*binomial(n, k), k, j + 1, n)
-             sage: forget()
-             sage: assume(j==-1)
-             sage: sum(binomial(n,k)*binomial(k-1,j)*(-1)**(k-1-j),k,j+1,n)
-@@ -12178,7 +12188,7 @@ cdef class Expression(CommutativeRingElement):
-             sage: forget()
-             sage: assume(j<-1)
-             sage: sum(binomial(n,k)*binomial(k-1,j)*(-1)**(k-1-j),k,j+1,n)
--            -(-1)^(-j)*sum((-1)^k*binomial(k - 1, j)*binomial(n, k), k, j + 1, n)
-+            -(-1)^j*sum((-1)^k*binomial(k - 1, j)*binomial(n, k), k, j + 1, n)
-             sage: forget()
- 
-         Check that :trac:`16176` is fixed::
-diff --git a/src/sage/symbolic/relation.py b/src/sage/symbolic/relation.py
-index da6f0eef42..4bd65ef572 100644
---- a/src/sage/symbolic/relation.py
-+++ b/src/sage/symbolic/relation.py
-@@ -895,7 +895,7 @@ def solve(f, *args, **kwds):
-         sage: (r[0][x], r[0][y])
-         (2*lambert_w(1/2), 1)
-         sage: solve(-2*x**3 + 4*x**2 - 2*x + 6 > 0, x, algorithm='sympy')
--        [x < (1/6*sqrt(77) + 79/54)^(1/3) + 1/9/(1/6*sqrt(77) + 79/54)^(1/3) + 2/3]
-+        [x < 1/3*(1/2)^(1/3)*(9*sqrt(77) + 79)^(1/3) + 2/3*(1/2)^(2/3)/(9*sqrt(77) + 79)^(1/3) + 2/3]
-         sage: solve(sqrt(2*x^2 - 7) - (3 - x),x,algorithm='sympy')
-         [x == -8, x == 2]
-         sage: solve(sqrt(2*x + 9) - sqrt(x + 1) - sqrt(x + 4),x,algorithm='sympy')
diff --git a/pkgs/applications/science/math/sage/patches/python3-syntax-without-write.patch b/pkgs/applications/science/math/sage/patches/python3-syntax-without-write.patch
deleted file mode 100644
index ff1dcd22acf3..000000000000
--- a/pkgs/applications/science/math/sage/patches/python3-syntax-without-write.patch
+++ /dev/null
@@ -1,40 +0,0 @@
-diff --git a/src/sage/tests/py3_syntax.py b/src/sage/tests/py3_syntax.py
-index e564860b48..86ab3725f9 100644
---- a/src/sage/tests/py3_syntax.py
-+++ b/src/sage/tests/py3_syntax.py
-@@ -179,15 +179,30 @@ class Python3SyntaxTest(SortedDirectoryWalkerABC):
-             sage: py3_syntax = Python3SyntaxTest()
-             sage: py3_syntax.test(src.name)
-             Invalid Python 3 syntax found:
--              File "...py", line 1
--                print "invalid print statement"
--                                              ^
--            SyntaxError: Missing parentheses in call to 'print'
-+            Missing parentheses in call to 'print'...
-             sage: os.unlink(src.name)
-         """
-+
-+        # compile all given files in memory, printing all errors
-+        # inspired by the py_compile module (but without writing to file)
-+        script = """
-+import sys
-+import importlib.machinery
-+rv = 0
-+for file in sys.argv[1:]:
-+    loader = importlib.machinery.SourceFileLoader('<sage_test>', file)
-+    source_bytes = loader.get_data(file)
-+    try:
-+        code = loader.source_to_code(source_bytes, file)
-+    except Exception as err:
-+        print(err)
-+        rv = 1
-+sys.exit(rv)
-+"""
-         cmd = [
-             'python3',
--            '-m', 'py_compile'
-+            '-c',
-+            script,
-         ] + list(filenames)
-         process = subprocess.Popen(
-             cmd,
diff --git a/pkgs/applications/science/math/sage/patches/sagenb-sphinx-1.7.patch b/pkgs/applications/science/math/sage/patches/sagenb-sphinx-1.7.patch
deleted file mode 100644
index 42deef4eab0c..000000000000
--- a/pkgs/applications/science/math/sage/patches/sagenb-sphinx-1.7.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-From 7419e0246230594ebfd5e7a2fe6b80d67abfc98a Mon Sep 17 00:00:00 2001
-From: Jeroen Demeyer <jdemeyer@cage.ugent.be>
-Date: Tue, 20 Mar 2018 10:40:41 +0100
-Subject: Fix sphinxify doctests
-
----
- sagenb/misc/sphinxify.py | 6 +++---
- 1 file changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/sagenb/misc/sphinxify.py b/sagenb/misc/sphinxify.py
-index 4f76d41..15623d9 100644
---- a/sagenb/misc/sphinxify.py
-+++ b/sagenb/misc/sphinxify.py
-@@ -47,11 +47,11 @@ def sphinxify(docstring, format='html'):
- 
-         sage: from sage.misc.sphinxify import sphinxify
-         sage: sphinxify('A test')
--        '...<div class="docstring">\n    \n  <p>A test</p>\n\n\n</div>'
-+        '<div class="docstring">\n    \n  <p>A test</p>\n\n\n</div>'
-         sage: sphinxify('**Testing**\n`monospace`')
--        '...<div class="docstring"...<strong>Testing</strong>\n<span class="math"...</p>\n\n\n</div>'
-+        '<div class="docstring"...<strong>Testing</strong>\n<span class="math notranslate"...</p>\n\n\n</div>'
-         sage: sphinxify('`x=y`')
--        '...<div class="docstring">\n    \n  <p><span class="math">x=y</span></p>\n\n\n</div>'
-+        '<div class="docstring">\n    \n  <p><span class="math notranslate">x=y</span></p>\n\n\n</div>'
-         sage: sphinxify('`x=y`', format='text')
-         'x=y\n'
-         sage: sphinxify(':math:`x=y`', format='text')
--- 
-cgit v1.0-1-gd88e
-
diff --git a/pkgs/applications/science/math/sage/patches/singular-4.1.1p2.patch b/pkgs/applications/science/math/sage/patches/singular-4.1.1p2.patch
new file mode 100644
index 000000000000..4c8df92904ed
--- /dev/null
+++ b/pkgs/applications/science/math/sage/patches/singular-4.1.1p2.patch
@@ -0,0 +1,274 @@
+diff --git a/src/sage/interfaces/singular.py b/src/sage/interfaces/singular.py
+index 9d65c9fa6c..a028bbe719 100644
+--- a/src/sage/interfaces/singular.py
++++ b/src/sage/interfaces/singular.py
+@@ -654,7 +654,7 @@ class Singular(ExtraTabCompletion, Expect):
+ 
+         s = Expect.eval(self, x, **kwds)
+ 
+-        if s.find("error") != -1 or s.find("Segment fault") != -1:
++        if s.find("error occurred") != -1 or s.find("Segment fault") != -1:
+             raise SingularError('Singular error:\n%s'%s)
+ 
+         if get_verbose() > 0:
+@@ -1079,7 +1079,7 @@ class Singular(ExtraTabCompletion, Expect):
+             sage: S = singular.ring('real', '(a,b)', 'lp')
+             sage: singular.current_ring()
+             polynomial ring, over a field, global ordering
+-            //   coefficients: float
++            //   coefficients: Float()
+             //   number of vars : 2
+             //        block   1 : ordering lp
+             //                  : names    a b
+@@ -1157,7 +1157,7 @@ class Singular(ExtraTabCompletion, Expect):
+              sage: singular._tab_completion()
+              ['exteriorPower',
+               ...
+-              'flintZ']
++              'crossprod']
+          """
+         p = re.compile("// *([a-z0-9A-Z_]*).*") #compiles regular expression
+         proclist = self.eval("listvar(proc)").splitlines()
+@@ -1183,7 +1183,7 @@ class Singular(ExtraTabCompletion, Expect):
+         EXAMPLES::
+ 
+             sage: singular.version()
+-            "Singular ... version 4.1.0 ...
++            "Singular ... version 4...
+         """
+         return singular_version()
+ 
+@@ -1562,7 +1562,7 @@ class SingularElement(ExtraTabCompletion, ExpectElement):
+         elif charstr[0] in ['0', 'QQ']:
+             from sage.all import QQ
+             br = QQ
+-        elif charstr[0]=='real':
++        elif charstr[0].startswith('Float'):
+             from sage.all import RealField, ceil, log
+             prec = singular.eval('ringlist(basering)[1][2][1]')
+             br = RealField(ceil((ZZ(prec)+1)/log(2,10)))
+@@ -1750,7 +1750,7 @@ class SingularElement(ExtraTabCompletion, ExpectElement):
+ 
+         # Singular 4 puts parentheses around floats and sign outside them
+         charstr = self.parent().eval('charstr(basering)').split(',',1)
+-        if charstr[0] in ['real', 'complex']:
++        if charstr[0]=='complex' or charstr[0].startswith('Float'):
+               for i in range(coeff_start, 2 * coeff_start):
+                   singular_poly_list[i] = singular_poly_list[i].replace('(','').replace(')','')
+ 
+@@ -1992,7 +1992,7 @@ class SingularElement(ExtraTabCompletion, ExpectElement):
+             sage: S = singular.ring('real', '(a,b)', 'lp')
+             sage: singular.current_ring()
+             polynomial ring, over a field, global ordering
+-            //   coefficients: float
++            //   coefficients: Float()
+             //   number of vars : 2
+             //        block   1 : ordering lp
+             //                  : names    a b
+@@ -2072,7 +2072,7 @@ class SingularElement(ExtraTabCompletion, ExpectElement):
+             sage: R._tab_completion()
+             ['exteriorPower',
+              ...
+-             'flintZ']
++             'crossprod']
+         """
+         return self.parent()._tab_completion()
+ 
+@@ -2358,7 +2358,7 @@ def singular_version():
+     EXAMPLES::
+ 
+         sage: singular.version()
+-        "Singular ... version 4.1.0 ...
++        "Singular ... version 4...
+     """
+     return singular.eval('system("--version");')
+ 
+diff --git a/src/sage/libs/singular/decl.pxd b/src/sage/libs/singular/decl.pxd
+index 4b658c4807..d863740419 100644
+--- a/src/sage/libs/singular/decl.pxd
++++ b/src/sage/libs/singular/decl.pxd
+@@ -170,7 +170,7 @@ cdef extern from "singular/Singular/libsingular.h":
+ 
+     int n_NumberOfParameters(const n_Procs_s* r)
+ 
+-    ctypedef struct poly "polyrec":
++    ctypedef struct poly "spolyrec":
+         poly *next
+         number *coef
+         unsigned long exp[1]
+@@ -630,9 +630,13 @@ cdef extern from "singular/Singular/libsingular.h":
+     # return p*q, destroys p and q
+     poly *p_Mult_q(poly *p, poly *q, ring *r)
+ 
++    # polynomial division, ignoring the rest
++    # via singclap_pdivide resp. idLift, destroys p,q
++    poly *p_Divide(poly *p, poly *q, ring *r)
++
+     # divide monomial p by monomial q, p,q const
+ 
+-    poly *pDivide(poly *p,poly *q)
++    poly *pMDivide(poly *p,poly *q)
+ 
+     # return the i-th power of p; p destroyed, requires global ring
+ 
+diff --git a/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx b/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
+index 2a8d9ae021..aeff53af6c 100644
+--- a/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
++++ b/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
+@@ -190,8 +190,8 @@ from sage.libs.singular.decl cimport (
+     n_IsUnit, n_Invers,
+     p_ISet, rChangeCurrRing, p_Copy, p_Init, p_SetCoeff, p_Setm, p_SetExp, p_Add_q,
+     p_NSet, p_GetCoeff, p_Delete, p_GetExp, pNext, rRingVar, omAlloc0, omStrDup,
+-    omFree, pDivide, p_SetCoeff0, n_Init, p_DivisibleBy, pLcm, p_LmDivisibleBy,
+-    pDivide, p_IsConstant, p_ExpVectorEqual, p_String, p_LmInit, n_Copy,
++    omFree, pMDivide, p_Divide, p_SetCoeff0, n_Init, p_DivisibleBy, pLcm, p_LmDivisibleBy,
++    pMDivide, p_IsConstant, p_ExpVectorEqual, p_String, p_LmInit, n_Copy,
+     p_IsUnit, p_Series, p_Head, idInit, fast_map_common_subexp, id_Delete,
+     p_IsHomogeneous, p_Homogen, p_Totaldegree,pLDeg1_Totaldegree, singclap_pdivide, singclap_factorize,
+     idLift, IDELEMS, On, Off, SW_USE_CHINREM_GCD, SW_USE_EZGCD,
+@@ -1693,8 +1693,8 @@ cdef class MPolynomialRing_libsingular(MPolynomialRing_base):
+         if not g._poly:
+             raise ZeroDivisionError
+ 
+-        if r!=currRing: rChangeCurrRing(r)  # pDivide
+-        res = pDivide(f._poly, g._poly)
++        if r!=currRing: rChangeCurrRing(r)  # pMDivide
++        res = pMDivide(f._poly, g._poly)
+         if coeff:
+             if r.cf.type == n_unknown or r.cf.cfDivBy(p_GetCoeff(f._poly, r), p_GetCoeff(g._poly, r), r.cf):
+                 n = r.cf.cfDiv( p_GetCoeff(f._poly, r) , p_GetCoeff(g._poly, r), r.cf)
+@@ -1853,8 +1853,8 @@ cdef class MPolynomialRing_libsingular(MPolynomialRing_base):
+                    and (<MPolynomial_libsingular>g) \
+                    and g.parent() is self \
+                    and p_LmDivisibleBy((<MPolynomial_libsingular>g)._poly, m, r):
+-                if r!=currRing: rChangeCurrRing(r)  # pDivide
+-                flt = pDivide(f._poly, (<MPolynomial_libsingular>g)._poly)
++                if r!=currRing: rChangeCurrRing(r)  # pMDivide
++                flt = pMDivide(f._poly, (<MPolynomial_libsingular>g)._poly)
+                 #p_SetCoeff(flt, n_Div( p_GetCoeff(f._poly, r) , p_GetCoeff((<MPolynomial_libsingular>g)._poly, r), r), r)
+                 p_SetCoeff(flt, n_Init(1, r), r)
+                 return new_MP(self,flt), g
+@@ -4023,16 +4023,6 @@ cdef class MPolynomial_libsingular(MPolynomial):
+             Traceback (most recent call last):
+             ...
+             NotImplementedError: Division of multivariate polynomials over non fields by non-monomials not implemented.
+-
+-        TESTS::
+-
+-            sage: P.<x,y> = ZZ[]
+-            sage: p = 3*(-x^8*y^2 - x*y^9 + 6*x^8*y + 17*x^2*y^6 - x^3*y^2)
+-            sage: q = 7*(x^2 + x*y + y^2 + 1)
+-            sage: p*q//q == p
+-            True
+-            sage: p*q//p == q
+-            True
+         """
+         cdef MPolynomialRing_libsingular parent = self._parent
+         cdef ring *r = self._parent_ring
+@@ -4052,13 +4042,18 @@ cdef class MPolynomial_libsingular(MPolynomial):
+         _right = <MPolynomial_libsingular>right
+ 
+         if r.cf.type != n_unknown:
++            if r.cf.type == n_Z:
++                P = parent.change_ring(RationalField())
++                f = P(self)//P(right)
++                CM = list(f)
++                return parent(sum([c.floor()*m for c,m in CM]))
+             if _right.is_monomial():
+                 p = _self._poly
+                 quo = p_ISet(0,r)
+-                if r != currRing: rChangeCurrRing(r)   # pDivide
++                if r != currRing: rChangeCurrRing(r)   # pMDivide
+                 while p:
+                     if p_DivisibleBy(_right._poly, p, r):
+-                        temp = pDivide(p, _right._poly)
++                        temp = pMDivide(p, _right._poly)
+                         p_SetCoeff0(temp, n_Copy(p_GetCoeff(p, r), r), r)
+                         quo = p_Add_q(quo, temp, r)
+                     p = pNext(p)
+@@ -4794,6 +4789,8 @@ cdef class MPolynomial_libsingular(MPolynomial):
+             sage: p = -x*y + x*z + 54*x - 2
+             sage: (5*p^2).lcm(3*p) == 15*p^2
+             True
++            sage: lcm(2*x,2*x*y)
++            2*x*y
+         """
+         cdef ring *_ring = self._parent_ring
+         cdef poly *ret
+@@ -4821,9 +4818,7 @@ cdef class MPolynomial_libsingular(MPolynomial):
+         if _ring!=currRing: rChangeCurrRing(_ring)  # singclap_gcd
+         gcd = singclap_gcd(p_Copy(self._poly, _ring), p_Copy(_g._poly, _ring), _ring )
+         prod = pp_Mult_qq(self._poly, _g._poly, _ring)
+-        ret = singclap_pdivide(prod , gcd , _ring)
+-        p_Delete(&prod, _ring)
+-        p_Delete(&gcd, _ring)
++        ret = p_Divide(prod, gcd, _ring)
+         if count >= 20:
+             sig_off()
+         return new_MP(self._parent, ret)
+@@ -4866,7 +4861,7 @@ cdef class MPolynomial_libsingular(MPolynomial):
+             sage: f.quo_rem(y)
+             (2*x^2, x + 1)
+             sage: f.quo_rem(3*x)
+-            (2*x*y + 1, -4*x^2*y - 2*x + 1)
++            (0, 2*x^2*y + x + 1)
+ 
+         TESTS::
+ 
+@@ -4888,7 +4883,7 @@ cdef class MPolynomial_libsingular(MPolynomial):
+         if right.is_zero():
+             raise ZeroDivisionError
+ 
+-        if not self._parent._base.is_field() and not is_IntegerRing(self._parent._base):
++        if not self._parent._base.is_field():
+             py_quo = self//right
+             py_rem = self - right*py_quo
+             return py_quo, py_rem
+diff --git a/src/sage/rings/polynomial/plural.pyx b/src/sage/rings/polynomial/plural.pyx
+index d5439f7f08..ad20ebcca0 100644
+--- a/src/sage/rings/polynomial/plural.pyx
++++ b/src/sage/rings/polynomial/plural.pyx
+@@ -998,7 +998,7 @@ cdef class NCPolynomialRing_plural(Ring):
+         if not g._poly:
+             raise ZeroDivisionError
+ 
+-        res = pDivide(f._poly,g._poly)
++        res = pMDivide(f._poly,g._poly)
+         if coeff:
+             if (r.cf.type == n_unknown) or r.cf.cfDivBy(p_GetCoeff(f._poly, r), p_GetCoeff(g._poly, r), r.cf):
+                 n = r.cf.cfDiv( p_GetCoeff(f._poly, r) , p_GetCoeff(g._poly, r), r.cf)
+@@ -1193,7 +1193,7 @@ cdef class NCPolynomialRing_plural(Ring):
+             if isinstance(g, NCPolynomial_plural) \
+                    and (<NCPolynomial_plural>g) \
+                    and p_LmDivisibleBy((<NCPolynomial_plural>g)._poly, m, r):
+-                flt = pDivide(f._poly, (<NCPolynomial_plural>g)._poly)
++                flt = pMDivide(f._poly, (<NCPolynomial_plural>g)._poly)
+                 #p_SetCoeff(flt, n_Div( p_GetCoeff(f._poly, r) , p_GetCoeff((<NCPolynomial_plural>g)._poly, r), r), r)
+                 p_SetCoeff(flt, n_Init(1, r), r)
+                 return new_NCP(self,flt), g
+diff --git a/src/sage/rings/polynomial/polynomial_singular_interface.py b/src/sage/rings/polynomial/polynomial_singular_interface.py
+index 9331169f8b..f753610fd3 100644
+--- a/src/sage/rings/polynomial/polynomial_singular_interface.py
++++ b/src/sage/rings/polynomial/polynomial_singular_interface.py
+@@ -81,8 +81,8 @@ class PolynomialRing_singular_repr:
+             sage: R.<x,y> = PolynomialRing(CC)
+             sage: singular(R)
+             polynomial ring, over a field, global ordering
+-            //   coefficients: float[I](complex:15 digits, additional 0 digits)/(I^2+1)
+-            //   number of vars : 2
++            // coefficients: real[I](complex:15 digits, additional 0 digits)/(I^2+1)
++            // number of vars : 2
+             //        block   1 : ordering dp
+             //                  : names    x y
+             //        block   2 : ordering C
+@@ -90,8 +90,8 @@ class PolynomialRing_singular_repr:
+             sage: R.<x,y> = PolynomialRing(RealField(100))
+             sage: singular(R)
+             polynomial ring, over a field, global ordering
+-            //   coefficients: float
+-            //   number of vars : 2
++            // coefficients: Float()
++            // number of vars : 2
+             //        block   1 : ordering dp
+             //                  : names    x y
+             //        block   2 : ordering C
diff --git a/pkgs/applications/science/math/sage/patches/sphinx-1.7.patch b/pkgs/applications/science/math/sage/patches/sphinx-1.7.patch
deleted file mode 100644
index c67b8942e28b..000000000000
--- a/pkgs/applications/science/math/sage/patches/sphinx-1.7.patch
+++ /dev/null
@@ -1,62 +0,0 @@
-diff --git a/src/bin/sage b/src/bin/sage
-index 397f30cbed..3fc473c343 100755
---- a/src/bin/sage
-+++ b/src/bin/sage
-@@ -980,8 +980,11 @@ if [ "$1" = '-rsyncdist' -o "$1" = "--rsyncdist" ]; then
- fi
- 
- if [ "$1" = "-docbuild" -o "$1" = "--docbuild" ]; then
-+    # Redirect stdin from /dev/null. This helps with running TeX which
-+    # tends to ask interactive questions if something goes wrong. These
-+    # cause the build to hang. If stdin is /dev/null, TeX just aborts.
-     shift
--    exec sage-python23 -m "sage_setup.docbuild" "$@"
-+    exec sage-python23 -m sage_setup.docbuild "$@" </dev/null
- fi
- 
- if [ "$1" = '-gdb' -o "$1" = "--gdb" ]; then
-diff --git a/src/doc/common/conf.py b/src/doc/common/conf.py
-index 25f94f7b7d..3f07474d9b 100644
---- a/src/doc/common/conf.py
-+++ b/src/doc/common/conf.py
-@@ -627,7 +627,7 @@ def call_intersphinx(app, env, node, contnode):
-         sage: for line in open(thematic_index).readlines():
-         ....:     if "padics" in line:
-         ....:         sys.stdout.write(line)
--        <li><a class="reference external" href="../reference/padics/sage/rings/padics/tutorial.html#sage-rings-padics-tutorial" title="(in Sage Reference Manual: p-Adics ...)"><span>Introduction to the -adics</span></a></li>
-+        <li><a class="reference external" href="../reference/padics/sage/rings/padics/tutorial.html#sage-rings-padics-tutorial" title="(in Sage Reference Manual: p-Adics v...)"><span>Introduction to the -adics</span></a></li>
-     """
-     debug_inf(app, "???? Trying intersphinx for %s"%node['reftarget'])
-     builder = app.builder
-diff --git a/src/sage/misc/sphinxify.py b/src/sage/misc/sphinxify.py
-index 4f76d4113a..8f426b5989 100644
---- a/src/sage/misc/sphinxify.py
-+++ b/src/sage/misc/sphinxify.py
-@@ -47,11 +47,11 @@ def sphinxify(docstring, format='html'):
- 
-         sage: from sage.misc.sphinxify import sphinxify
-         sage: sphinxify('A test')
--        '...<div class="docstring">\n    \n  <p>A test</p>\n\n\n</div>'
-+        '<div class="docstring">\n    \n  <p>A test</p>\n\n\n</div>'
-         sage: sphinxify('**Testing**\n`monospace`')
--        '...<div class="docstring"...<strong>Testing</strong>\n<span class="math"...</p>\n\n\n</div>'
-+        '<div class="docstring"...<strong>Testing</strong>\n<span class="math...</p>\n\n\n</div>'
-         sage: sphinxify('`x=y`')
--        '...<div class="docstring">\n    \n  <p><span class="math">x=y</span></p>\n\n\n</div>'
-+        '<div class="docstring">\n    \n  <p><span class="math notranslate nohighlight">x=y</span></p>\n\n\n</div>'
-         sage: sphinxify('`x=y`', format='text')
-         'x=y\n'
-         sage: sphinxify(':math:`x=y`', format='text')
-diff --git a/src/sage_setup/docbuild/sphinxbuild.py b/src/sage_setup/docbuild/sphinxbuild.py
-index fda76a4174..d3413239dd 100644
---- a/src/sage_setup/docbuild/sphinxbuild.py
-+++ b/src/sage_setup/docbuild/sphinxbuild.py
-@@ -207,7 +207,7 @@ def runsphinx():
-     try:
-         sys.stdout = SageSphinxLogger(sys.stdout, os.path.basename(output_dir))
-         sys.stderr = SageSphinxLogger(sys.stderr, os.path.basename(output_dir))
--        sphinx.cmdline.main(sys.argv)
-+        sphinx.cmdline.main(sys.argv[1:])
-     finally:
-         sys.stdout = saved_stdout
-         sys.stderr = saved_stderr
diff --git a/pkgs/applications/science/math/sage/patches/spkg-scripts.patch b/pkgs/applications/science/math/sage/patches/spkg-scripts.patch
new file mode 100644
index 000000000000..4d37998b288b
--- /dev/null
+++ b/pkgs/applications/science/math/sage/patches/spkg-scripts.patch
@@ -0,0 +1,46 @@
+commit f02714d4aea80e17cb8df62bab75d7c1a1b61a8e
+Author: Timo Kaufmann <timokau@zoho.com>
+Date:   Mon Jul 9 18:26:18 2018 +0200
+
+    Don't attempt to create dirs when showing pkg info
+    
+    The script dir cannot be assumed to be writeable after installation.
+
+diff --git a/build/bin/sage-spkg b/build/bin/sage-spkg
+index f3e02aeae5..190d558ad1 100755
+--- a/build/bin/sage-spkg
++++ b/build/bin/sage-spkg
+@@ -167,14 +167,6 @@ if [ -z "$SAGE_BUILD_DIR" ]; then
+     export SAGE_BUILD_DIR="$SAGE_LOCAL/var/tmp/sage/build"
+ fi
+ 
+-for dir in "$SAGE_SPKG_INST" "$SAGE_SPKG_SCRIPTS"; do
+-    mkdir -p "$dir"
+-    if [ $? -ne 0 ]; then
+-        error_msg "Error creating directory $dir"
+-        exit 1
+-    fi
+-done
+-
+ 
+ # Remove '.' from PYTHONPATH, which may also come from SAGE_PATH, to avoid
+ # trouble with setuptools / easy_install (cf. #10192, #10176):
+@@ -563,11 +555,13 @@ fi
+ # Setup directories
+ ##################################################################
+ 
+-mkdir -p "$SAGE_BUILD_DIR"
+-if [ $? -ne 0 ]; then
+-    error_msg "Error creating directory $SAGE_BUILD_DIR"
+-    exit 1
+-fi
++for dir in "$SAGE_SPKG_INST" "$SAGE_SPKG_SCRIPTS" "$SAGE_BUILD_DIR"; do
++    mkdir -p "$dir"
++    if [ $? -ne 0 ]; then
++        error_msg "Error creating directory $dir"
++        exit 1
++    fi
++done
+ 
+ # Trac #5852: check write permissions
+ if [ ! -w "$SAGE_BUILD_DIR" ]; then
diff --git a/pkgs/applications/science/math/sage/patches/zn_poly_version.patch b/pkgs/applications/science/math/sage/patches/zn_poly_version.patch
deleted file mode 100644
index 92ea4303e477..000000000000
--- a/pkgs/applications/science/math/sage/patches/zn_poly_version.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/src/sage/misc/package.py b/src/sage/misc/package.py
-index 7ff4f21675..1d72168833 100644
---- a/src/sage/misc/package.py
-+++ b/src/sage/misc/package.py
-@@ -350,7 +350,7 @@ def package_versions(package_type, local=False):
-         sage: 'gap' in std
-         True
-         sage: std['zn_poly']
--        ('0.9.p11', '0.9.p11')
-+        ('0.9', '0.9.p11')
-     """
-     return {pkg['name']: (pkg['installed_version'], pkg['remote_version']) for pkg in list_packages(package_type, local=local).values()}
- 
diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix
index c97785c574cb..1144057b188d 100644
--- a/pkgs/applications/science/math/sage/sage-src.nix
+++ b/pkgs/applications/science/math/sage/sage-src.nix
@@ -3,17 +3,20 @@
 , fetchpatch
 }:
 stdenv.mkDerivation rec {
-  version = "8.2";
+  version = "8.3";
   name = "sage-src-${version}";
 
   src = fetchFromGitHub {
     owner = "sagemath";
     repo = "sage";
     rev = version;
-    sha256 = "0d7vc16s7dj23an2cb8v5bhbnc6nsw20qhnnxr0xh8qg629027b8";
+    sha256 = "0mbm99m5xry21xpi4q3q96gx392liwbifywf5awvl0j85a7rkfyx";
   };
 
   nixPatches = [
+    # https://trac.sagemath.org/ticket/25809
+    ./patches/spkg-scripts.patch
+
     # https://trac.sagemath.org/ticket/25309
     (fetchpatch {
       name = "spkg-paths.patch";
@@ -26,14 +29,7 @@ stdenv.mkDerivation rec {
       sha256 = "14s50yg3hpw9cp3v581dx7zfmpm2j972im7x30iwki8k45mjvk3i";
     })
 
-    # https://trac.sagemath.org/ticket/25328
-    # https://trac.sagemath.org/ticket/25546
     # https://trac.sagemath.org/ticket/25722
-    (fetchpatch {
-      name = "install-jupyter-kernel-in-correct-prefix.patch";
-      url = "https://git.sagemath.org/sage.git/patch?id=72167b98e3f64326df6b2c78785df25539472fcc";
-      sha256 = "0pscnjhm7r2yr2rxnv4kkkq626vwaja720lixa3m3w9rwlxll5a7";
-    })
     ./patches/test-in-tmpdir.patch
 
     # https://trac.sagemath.org/ticket/25358
@@ -43,27 +39,13 @@ stdenv.mkDerivation rec {
       sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7";
     })
 
-    # https://trac.sagemath.org/ticket/25357 rebased on 8.2
-    ./patches/python3-syntax-without-write.patch
-
-    # https://trac.sagemath.org/ticket/25314
-    (fetchpatch {
-      name = "make-qepcad-test-optional.patch";
-      url = "https://git.sagemath.org/sage.git/patch/?h=fe294c58bd035ef427e268901d54a6faa0058138";
-      sha256 = "003d5baf5c0n5rfg010ijwkwz8kg0s414cxwczs2vhdayxdixbix";
-    })
-
+    # Unfortunately inclusion in upstream sage was rejected. Instead the bug was
+    # fixed in python, but of course not backported to 2.7. So we'll probably
+    # have to keep this around until 2.7 is deprecated.
     # https://trac.sagemath.org/ticket/25316
+    # https://github.com/python/cpython/pull/7476
     ./patches/python-5755-hotpatch.patch
 
-    # https://trac.sagemath.org/ticket/25354
-    # https://trac.sagemath.org/ticket/25531
-    (fetchpatch {
-      name = "cysignals-include.patch";
-      url = "https://git.sagemath.org/sage.git/patch/?h=28778bd25a37c80884d2b24e0683fb2989300cef";
-      sha256 = "0fiiiw91pgs8avm9ggj8hb64bhqzl6jcw094d94nhirmh8w2jmc5";
-    })
-
     # https://trac.sagemath.org/ticket/25315
     (fetchpatch {
       name = "find-libraries-in-dyld-library-path.patch";
@@ -71,16 +53,13 @@ stdenv.mkDerivation rec {
       sha256 = "1k3afq3qlzmgqwx6rzs5wv153vv9dsf5rk8pi61g57l3r3npbjmc";
     })
 
-    # Pari upstream has since accepted a patch, so this patch won't be necessary once sage updates pari.
-    # https://trac.sagemath.org/ticket/25312
-    ./patches/pari-stackwarn.patch
-
-    # https://trac.sagemath.org/ticket/25311
-    ./patches/zn_poly_version.patch
-
     # https://trac.sagemath.org/ticket/25345
     # (upstream patch doesn't apply on 8.2 source)
     ./patches/dochtml-optional.patch
+
+    # work with pari with threads enabled at compile time (disable them at runtime)
+    # https://trac.sagemath.org/ticket/26002
+    ./patches/pari-no-threads.patch
   ];
 
   packageUpgradePatches = [
@@ -106,87 +85,55 @@ stdenv.mkDerivation rec {
     # the last version.
     ./patches/eclib-regulator-precision.patch
 
-    # sphinx 1.6 -> 1.7 upgrade
-    # https://trac.sagemath.org/ticket/24935
-    ./patches/sphinx-1.7.patch
-
-    # Adapt hashes to new boost version
-    # https://trac.sagemath.org/ticket/22243
-    # (this ticket doesn't only upgrade boost but also avoids this problem in the future)
-    (fetchpatch {
-      name = "boost-upgrade.patch";
-      url = "https://git.sagemath.org/sage.git/patch?id=a24a9c6b30b93957333a3116196214a931325b69";
-      sha256 = "0z3870g2ms2a81vnw08dc2i4k7jr62w8fggvcdwaavgd1wvdxwfl";
-    })
-
-    # gfan 0.6.2
-    # https://trac.sagemath.org/ticket/23353
-    (fetchpatch {
-      name = "gfan-update.patch";
-      url = "https://git.sagemath.org/sage.git/patch/?h=420215fc469cde733ec7a339e59b78ad6eec804c&id=112498a293ea2bf563e41aed35f1aa608f01b349";
-      sha256 = "0ga3hkx8cr23dpc919lgvpi5lmy0d728jkq9z6kf0fl9s8g31mxb";
-    })
-
     # New glpk version has new warnings, filter those out until upstream sage has found a solution
     # https://trac.sagemath.org/ticket/24824
+    ./patches/pari-stackwarn.patch # not actually necessary since tha pari upgrade, but necessary for the glpk patch to apply
     (fetchpatch {
       url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch";
       sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp";
       stripLen = 1;
     })
 
-    # https://trac.sagemath.org/ticket/25329
-    (fetchpatch {
-      name = "dont-check-exact-glpk-version.patch";
-      url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=89d068d8d77316bfffa6bf8e9ebf70b3b3b88e5c";
-      sha256 = "00knwxs6fmymfgfl0q5kcavmxm9sf90a4r76y35n5s55gj8pl918";
-    })
+    # Only formatting changes.
+    # https://trac.sagemath.org/ticket/25260
+    ./patches/numpy-1.14.3.patch
 
-    # https://trac.sagemath.org/ticket/25355
-    (fetchpatch {
-      name = "maxima-5.41.0.patch";
-      url = "https://git.sagemath.org/sage.git/patch/?id=87328023c4739abdf24108038201e3fa9bdfc739";
-      sha256 = "0hxi7qr5mfx1bc32r8j7iba4gzd7c6v63asylyf5cbyp86azpb7i";
-    })
+    # https://trac.sagemath.org/ticket/25862
+    ./patches/eclib-20180710.patch
+
+    # https://trac.sagemath.org/ticket/24735
+    ./patches/singular-4.1.1p2.patch
 
-    # Update cddlib from 0.94g to 0.94h.
-    # https://trac.sagemath.org/ticket/25341 (doesn't apply to 8.2 sources)
+    # https://trac.sagemath.org/ticket/25567 and dependency #25635
     (fetchpatch {
-      url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/u2-version-cddlib-094h.patch";
-      sha256 = "0fmw7pzbaxs2dshky6iw9pr8i23p9ih2y2lw661qypdrxh5xw03k";
-      stripLen = 1;
+      name = "pari-upgrade-dependency.patch";
+      url = "https://git.sagemath.org/sage.git/patch/?id=6995e7cae1b3476ad0145f8dfc897cf91f0c3c4d";
+      sha256 = "1dvhabl1c9pwd9xkjvbjjg15mvb14b24p1f3cby1mlqk34d4lrs6";
     })
     (fetchpatch {
-      name = "revert-cddlib-doctest-changes.patch";
-      url = "https://git.sagemath.org/sage.git/patch/?id=269c1e1551285566b8ba7a2b890989e5590e9f11";
-      sha256 = "12bcjhq7hm2pmmj2bgjvcffjyls2x7q61ivlnaj5v5bsvhc183iy";
-      revert = true;
+      name = "pari-2.11.0.patch";
+      url = "https://git.sagemath.org/sage.git/patch/?id=7af4748cab37d651eaa88be501db88f4a5ffc584";
+      sha256 = "13f740ly3c19gcmhjngiycvmc3mcfj61y00i6jv0wmfgpm2z3ank";
     })
 
-
-    # Only formatting changes.
-    # https://trac.sagemath.org/ticket/25260
-    ./patches/numpy-1.14.3.patch
-
-    # https://trac.sagemath.org/ticket/24374
+    # ntl upgrade
     (fetchpatch {
-      name = "networkx-2.1.patch";
-      url = "https://salsa.debian.org/science-team/sagemath/raw/487df9ae48ca1d93d9b1cb3af8745d31e30fb741/debian/patches/u0-version-networkx-2.1.patch";
-      sha256 = "1xxxawygbgxgvlv7b4w8hhzgdnva4rhmgdxaiaa3pwdwln0yc750";
-      stripLen = 1;
+      name = "lcalc-c++11.patch";
+      url = "https://git.archlinux.org/svntogit/community.git/plain/trunk/sagemath-lcalc-c++11.patch?h=packages/sagemath&id=0e31ae526ab7c6b5c0bfacb3f8b1c4fd490035aa";
+      sha256 = "0p5wnvbx65i7cp0bjyaqgp4rly8xgnk12pqwaq3dqby0j2bk6ijb";
     })
 
-    # https://trac.sagemath.org/ticket/24927 rebased
-    ./patches/arb-2.13.0.patch
-
-    # https://trac.sagemath.org/ticket/24838 rebased
-    ./patches/pynac-0.7.22.patch
-
-    # https://trac.sagemath.org/ticket/25862
-    ./patches/eclib-20180710.patch
+    # cddlib 0.94i -> 0.94j
+    (fetchpatch {
+      name = "cddlib-0.94j.patch";
+      url = "https://git.sagemath.org/sage.git/patch/?id=2ab1546b3e21d1d0ab3b4fcd58576848b3a2d888";
+      sha256 = "1c5gnasq7y9xxj762bn79bis0zi8d9bgg7jzlf64ifixsrc5cymb";
+    })
   ];
 
-  patches = nixPatches ++ packageUpgradePatches;
+  patches = nixPatches ++ packageUpgradePatches ++ [
+    ./patches/known-padics-bug.patch
+  ];
 
   postPatch = ''
     # make sure shebangs etc are fixed, but sage-python23 still works
diff --git a/pkgs/applications/science/math/scilab-bin/default.nix b/pkgs/applications/science/math/scilab-bin/default.nix
index ad0231d37b0e..dacd3e730736 100644
--- a/pkgs/applications/science/math/scilab-bin/default.nix
+++ b/pkgs/applications/science/math/scilab-bin/default.nix
@@ -3,7 +3,7 @@
 let
   name = "scilab-bin-${ver}";
 
-  ver = "5.5.2";
+  ver = "6.0.1";
 
   majorVer = builtins.elemAt (lib.splitString "." ver) 0;
 
@@ -24,9 +24,9 @@ stdenv.mkDerivation rec {
     url = "https://www.scilab.org/download/${ver}/scilab-${ver}.bin.linux-${architecture}.tar.gz";
     sha256 =
       if stdenv.system == "i686-linux" then
-        "6143a95ded40411a35630a89b365875a6526cd4db1e2865ac5612929a7db937a"
+        "0fgjc2ak3b2qi6yin3fy50qwk2bcj0zbz1h4lyyic9n1n1qcliib"
       else if stdenv.system == "x86_64-linux" then
-        "c0dd7a5f06ec7a1df7a6b1b8b14407ff7f45e56821dff9b3c46bd09d4df8d350"
+        "1scswlznc14vyzg0gqa1q9gcpwx05kz1sbn563463mzkdp7nd35d"
       else
         badArch;
   };
diff --git a/pkgs/applications/science/math/singular/default.nix b/pkgs/applications/science/math/singular/default.nix
index 98b75cd22d05..24063216db04 100644
--- a/pkgs/applications/science/math/singular/default.nix
+++ b/pkgs/applications/science/math/singular/default.nix
@@ -1,5 +1,6 @@
 { stdenv, fetchurl, gmp, bison, perl, ncurses, readline, coreutils, pkgconfig
 , lib
+, fetchpatch
 , autoreconfHook
 , file
 , flint
@@ -36,6 +37,18 @@ stdenv.mkDerivation rec {
     patchShebangs .
   '';
 
+  patches = [
+    # NTL error handler was introduced in the library part, preventing users of
+    # the library from implementing their own error handling
+    # https://www.singular.uni-kl.de/forum/viewtopic.php?t=2769
+    (fetchpatch {
+      name = "move_error_handler_out_of_libsingular.patch";
+      # rebased version of https://github.com/Singular/Sources/commit/502cf86d0bb2a96715be6764774b64a69c1ca34c.patch
+      url = "https://git.sagemath.org/sage.git/plain/build/pkgs/singular/patches/singular-ntl-error-handler.patch?h=50b9ae2fd233c30860e1cbb3e63a26f2cc10560a";
+      sha256 = "0vgh4m9zn1kjl0br68n04j4nmn5i1igfn28cph0chnwf7dvr9194";
+    })
+  ];
+
   # For reference (last checked on commit 75f460d):
   # https://github.com/Singular/Sources/blob/spielwiese/doc/Building-Singular-from-source.md
   # https://github.com/Singular/Sources/blob/spielwiese/doc/external-packages-dynamic-modules.md
diff --git a/pkgs/applications/video/mpv/default.nix b/pkgs/applications/video/mpv/default.nix
index 55ab1b954898..c384455d6722 100644
--- a/pkgs/applications/video/mpv/default.nix
+++ b/pkgs/applications/video/mpv/default.nix
@@ -171,9 +171,12 @@ in stdenv.mkDerivation rec {
 
   buildPhase = ''
     python3 ${waf} build
+  '' + optionalString stdenv.isDarwin ''
+    python3 TOOLS/osxbundle.py -s build/mpv
   '';
 
-  installPhase =
+  # Ensure youtube-dl is available in $PATH for mpv
+  wrapperFlags = 
   let
     getPath  = type : "${luasocket}/lib/lua/${lua.luaversion}/?.${type};" +
                       "${luasocket}/share/lua/${lua.luaversion}/?.${type}";
@@ -181,24 +184,32 @@ in stdenv.mkDerivation rec {
     luaCPath = getPath "so";
   in
   ''
-    python3 ${waf} install
-
-    # Use a standard font
-    mkdir -p $out/share/mpv
-    ln -s ${freefont_ttf}/share/fonts/truetype/FreeSans.ttf $out/share/mpv/subfont.ttf
-    # Ensure youtube-dl is available in $PATH for MPV
-    wrapProgram $out/bin/mpv \
       --prefix LUA_PATH : "${luaPath}" \
       --prefix LUA_CPATH : "${luaCPath}" \
   '' + optionalString youtubeSupport ''
       --prefix PATH : "${youtube-dl}/bin" \
   '' + optionalString vapoursynthSupport ''
       --prefix PYTHONPATH : "${vapoursynth}/lib/${python3.libPrefix}/site-packages:$PYTHONPATH"
-  '' + ''
+  '';
+
+  installPhase = ''
+    python3 ${waf} install
+
+    # Use a standard font
+    mkdir -p $out/share/mpv
+    ln -s ${freefont_ttf}/share/fonts/truetype/FreeSans.ttf $out/share/mpv/subfont.ttf
+    wrapProgram "$out/bin/mpv" \
+      ${wrapperFlags}
 
     cp TOOLS/umpv $out/bin
     wrapProgram $out/bin/umpv \
       --set MPV "$out/bin/mpv"
+
+  '' + optionalString stdenv.isDarwin ''
+    mkdir -p $out/Applications
+    cp -r build/mpv.app $out/Applications
+    wrapProgram "$out/Applications/mpv.app/Contents/MacOS/mpv" \
+      ${wrapperFlags}
   '';
 
   meta = with stdenv.lib; {
diff --git a/pkgs/applications/video/plex-media-player/default.nix b/pkgs/applications/video/plex-media-player/default.nix
new file mode 100644
index 000000000000..7386d95d0c2b
--- /dev/null
+++ b/pkgs/applications/video/plex-media-player/default.nix
@@ -0,0 +1,86 @@
+{ stdenv, fetchFromGitHub, fetchurl, makeDesktopItem, pkgconfig, cmake, python3
+, libX11, libXrandr, qtbase, qtwebchannel, qtwebengine, qtx11extras
+, libvdpau, SDL2, mpv, libGL }:
+let
+  # During compilation, a CMake bundle is downloaded from `artifacts.plex.tv`,
+  # which then downloads a handful of web client-related files. To enable
+  # sandboxed builds, we manually download them and save them so these files
+  # are fetched ahead-of-time instead of during the CMake build. Whenever
+  # plex-media-player is updated, the versions for these files are changed,
+  # so the build IDs (and SHAs) below will need to be updated!
+  depSrcs = rec {
+    webClientBuildId = "56-23317d81e49651";
+    webClientDesktopBuildId = "3.57.1-1e49651";
+    webClientTvBuildId = "3.60.1-23317d8";
+
+    webClient = fetchurl {
+      url = "https://artifacts.plex.tv/web-client-pmp/${webClientBuildId}/buildid.cmake";
+      sha256 = "1a48a65zzdx347kfnxriwkb0yjlhvn2g8jkda5pz10r3lwja0gbi";
+    };
+    webClientDesktopHash = fetchurl {
+      url = "https://artifacts.plex.tv/web-client-pmp/${webClientBuildId}/web-client-desktop-${webClientDesktopBuildId}.tar.xz.sha1";
+      sha256 = "04wdgpsh33y8hyjhjrfw6ymf9g002jny7hvhld4xp33lwxhd2j5w";
+    };
+    webClientDesktop = fetchurl {
+      url = "https://artifacts.plex.tv/web-client-pmp/${webClientBuildId}/web-client-desktop-${webClientDesktopBuildId}.tar.xz";
+      sha256 = "1asw9f84z9sm3w7ifnc7j631j84rgx23c6msmn2dnw48ckv3bj2z";
+    };
+    webClientTvHash = fetchurl {
+      url = "https://artifacts.plex.tv/web-client-pmp/${webClientBuildId}/web-client-tv-${webClientTvBuildId}.tar.xz.sha1";
+      sha256 = "0d1hsvmpwczwx442f8qdvfr8c3w84630j9qwpg2y4qm423sgdvja";
+    };
+    webClientTv = fetchurl {
+      url = "https://artifacts.plex.tv/web-client-pmp/${webClientBuildId}/web-client-tv-${webClientTvBuildId}.tar.xz";
+      sha256 = "1ih3l5paf1jl68b1xq3iqqmvs3m07fybz57hcz4f78v0gwq2kryq";
+    };
+  };
+in stdenv.mkDerivation rec {
+  name = "plex-media-player-${version}";
+  version = "2.14.1.880";
+  vsnHash = "301a4b6c";
+
+  src = fetchFromGitHub {
+    owner = "plexinc";
+    repo = "plex-media-player";
+    rev = "v${version}-${vsnHash}";
+    sha256 = "0xz41r697vl6s3qvy6jwriv3pb9cfy61j6sydvdq121x5a0jnh9a";
+  };
+
+  nativeBuildInputs = [ pkgconfig cmake python3 ];
+  buildInputs = [ libX11 libXrandr qtbase qtwebchannel qtwebengine qtx11extras
+                  libvdpau SDL2 mpv libGL ];
+
+  desktopItem = makeDesktopItem {
+    name = "plex-media-player";
+    exec = "plexmediaplayer";
+    icon = "plex-media-player";
+    comment = "View your media";
+    desktopName = "Plex Media Player";
+    genericName = "Media Player";
+    categories = "AudioVideo;Video;Player;TV;";
+  };
+
+  preConfigure = with depSrcs; ''
+    mkdir -p build/dependencies
+    ln -s ${webClient} build/dependencies/buildid-${webClientBuildId}.cmake
+    ln -s ${webClientDesktopHash} build/dependencies/web-client-desktop-${webClientDesktopBuildId}.tar.xz.sha1
+    ln -s ${webClientDesktop} build/dependencies/web-client-desktop-${webClientDesktopBuildId}.tar.xz
+    ln -s ${webClientTvHash} build/dependencies/web-client-tv-${webClientTvBuildId}.tar.xz.sha1
+    ln -s ${webClientTv} build/dependencies/web-client-tv-${webClientTvBuildId}.tar.xz
+  '';
+
+  postInstall = ''
+    mkdir -p $out/share/{applications,pixmaps}
+    cp ${src}/resources/images/icon.png $out/share/pixmaps/plex-media-player.png
+    cp ${desktopItem}/share/applications/* $out/share/applications
+  '';
+
+  cmakeFlags = [ "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DQTROOT=${qtbase}" ];
+
+  meta = with stdenv.lib; {
+    description = "Streaming media player for Plex";
+    license = licenses.gpl2;
+    maintainers = with maintainers; [ kylewlacy ];
+    homepage = https://plex.tv;
+  };
+}
diff --git a/pkgs/applications/video/shotcut/default.nix b/pkgs/applications/video/shotcut/default.nix
index 0df5d42ee0ea..950cd27937cc 100644
--- a/pkgs/applications/video/shotcut/default.nix
+++ b/pkgs/applications/video/shotcut/default.nix
@@ -1,20 +1,20 @@
 { stdenv, fetchFromGitHub, SDL2, frei0r, gettext, mlt, jack1, pkgconfig, qtbase
 , qtmultimedia, qtwebkit, qtx11extras, qtwebsockets, qtquickcontrols
 , qtgraphicaleffects, libmlt
-, qmake, makeWrapper, fetchpatch, qttools }:
+, qmake, makeWrapper, qttools }:
 
 assert stdenv.lib.versionAtLeast libmlt.version "6.8.0";
 assert stdenv.lib.versionAtLeast mlt.version "6.8.0";
 
 stdenv.mkDerivation rec {
   name = "shotcut-${version}";
-  version = "18.06.02";
+  version = "18.08";
 
   src = fetchFromGitHub {
     owner = "mltframework";
     repo = "shotcut";
     rev = "v${version}";
-    sha256 = "1pqpgsb8ix1akq326chf46vvl5h02dwmdskskf2n6impygsy4x7v";
+    sha256 = "1p2s4avm3bl5ippmgfzkkbb2w0xs4vhk2wbcd22g7bh1zq9w190n";
   };
 
   enableParallelBuilding = true;
@@ -26,7 +26,7 @@ stdenv.mkDerivation rec {
   ];
 
   NIX_CFLAGS_COMPILE = "-I${libmlt}/include/mlt++ -I${libmlt}/include/mlt";
-  qmakeFlags = [ "QMAKE_LRELEASE=${stdenv.lib.getDev qttools}/bin/lrelease" ];
+  qmakeFlags = [ "QMAKE_LRELEASE=${stdenv.lib.getDev qttools}/bin/lrelease" "SHOTCUT_VERSION=${version}" ];
 
   prePatch = ''
     sed 's_shotcutPath, "qmelt"_"${mlt}/bin/melt"_' -i src/jobs/meltjob.cpp
@@ -35,12 +35,6 @@ stdenv.mkDerivation rec {
     sed "s_/usr/bin/nice_''${NICE}_" -i src/jobs/meltjob.cpp src/jobs/ffmpegjob.cpp
   '';
 
-  patches = [ (fetchpatch {
-    url = https://github.com/mltframework/shotcut/commit/f304b7403cc7beb57b1610afd9c5c8173749e80b.patch;
-    name = "qt511.patch";
-    sha256 = "1ynvyjchcb33a33x4w1ddnah2gyzmnm125ailgg6xy60lqsnsmp9";
-    } ) ];
-
   postInstall = ''
     mkdir -p $out/share/shotcut
     cp -r src/qml $out/share/shotcut/
diff --git a/pkgs/data/fonts/tex-gyre/default.nix b/pkgs/data/fonts/tex-gyre/default.nix
index a801886350df..3229e58506d9 100644
--- a/pkgs/data/fonts/tex-gyre/default.nix
+++ b/pkgs/data/fonts/tex-gyre/default.nix
@@ -34,56 +34,48 @@ let
   };
 in stdenv.lib.mapAttrs mkVariant {
   adventor = {
-    displayName = "Adventor";
     version = "2_501";
     sha256 = "0qjg3x0adfppyx3x33cm07ww9i9sl88xaq07m7wfip8rmyp567fn";
     outputHash = "117h6f02m1r54b4f1a98q5kkjchl5pv9ibm1jla6xrzhk2pchb27";
     abbreviation = "qag";
   };
   bonum = {
-    displayName = "Bonum";
     version = "2.004";
     sha256 = "0qbrs98knx4h0b297c5n3vav4mkal1a95ai2dzmdc10pghfzl8vv";
     outputHash = "0bid8gzwz50ylmm8jyqf9s4nfvy6cp1x34wbyrh4gyk1ki6hf3z1";
     abbreviation = "qbk";
   };
   chorus = {
-    displayName = "Chorus";
     version = "2.003";
     sha256 = "1b0zak27fzmapwbf2jasvsd95vhnqyc92n985d1lc1ivwja1zgfa";
     outputHash = "0fqifd45c1ys6y98b66lmldfbv7wjb2414fs9swicv4n7xvl3cp1";
     abbreviation = "qzc";
   };
   cursor = {
-    displayName = "Cursor";
     version = "2.004";
     sha256 = "0ck3jm33bk2xsxp5d2irzd3j24zb49f0gnjvd1nikg1ivk8w85ng";
     outputHash = "0i76835xqlkrnlx303mx63m0f4899j056c2ag2fl6p9qk8s4rskp";
     abbreviation = "qcr";
   };
   heros = {
-    displayName = "Heros";
     version = "2.004";
     sha256 = "1fj2srxxf6ap913y5yd3dn4jzg828j7381gifs39nm5lnzmgw78y";
     outputHash = "16y76ab46fxm9k8wfmwx4w0cl96yrmjywz587lyr08s0agp1v3kf";
     abbreviation = "qhv";
   };
   pagella = {
-    displayName = "Pagella";
     version ="2_501";
     sha256 = "1kccaxs3vk93la2pz4nv05hx1x3diyla49cz4l33zifdcp2zgg9d";
     outputHash = "1nnjsgplimh29502pkd19rvfg93x31svxxmx4x7h51njrx1j8qa8";
     abbreviation = "qpl";
   };
   schola = {
-    displayName = "Schola";
     version = "2.005";
     sha256 = "05z3gk4mm0sa7wwjcv31j2xlzqhwhcncpamn0kn9y0221cdknyp8";
     outputHash = "1yqq1ngcylhldrh1v35l439k72szq9m4gx6g0wh235fk65chb2bm";
     abbreviation = "qcs";
   };
   termes = {
-    displayName = "Termes";
     version = "2.004";
     sha256 = "1aq3yqbgkc3z20dkcqyhicsyq0afbgg4l397z96sd8a16jyz2x8k";
     outputHash = "1igw821m601h8937pix6yish4d8fxmz3h4j9hripf41bxsiafzzg";
diff --git a/pkgs/desktops/gnome-3/apps/gnome-todo/default.nix b/pkgs/desktops/gnome-3/apps/gnome-todo/default.nix
new file mode 100644
index 000000000000..8e506b52270a
--- /dev/null
+++ b/pkgs/desktops/gnome-3/apps/gnome-todo/default.nix
@@ -0,0 +1,47 @@
+{ stdenv, fetchurl, meson, ninja, pkgconfig, wrapGAppsHook
+, gettext, gnome3, glib, gtk, libpeas
+, gnome-online-accounts, gsettings-desktop-schemas
+, evolution-data-server, libxml2, libsoup, libical, rest, json-glib }:
+
+let
+  pname = "gnome-todo";
+  version = "3.28.1";
+in stdenv.mkDerivation rec {
+  name = "${pname}-${version}";
+
+  src = fetchurl {
+    url = "mirror://gnome/sources/${pname}/${gnome3.versionBranch version}/${name}.tar.xz";
+    sha256 = "08ygqbib72jlf9y0a16k54zz51sncpq2wa18wp81v46q8301ymy7";
+  };
+
+  nativeBuildInputs = [
+    meson ninja pkgconfig gettext wrapGAppsHook
+  ];
+  buildInputs = [
+    glib gtk libpeas gnome-online-accounts
+    gsettings-desktop-schemas gnome3.defaultIconTheme
+    # Plug-ins
+    evolution-data-server libxml2 libsoup libical
+    rest json-glib
+  ];
+
+  postPatch = ''
+    chmod +x meson_post_install.py
+    patchShebangs meson_post_install.py
+  '';
+
+  passthru = {
+    updateScript = gnome3.updateScript {
+      packageName = pname;
+      attrPath = "gnome3.${pname}";
+    };
+  };
+
+  meta = with stdenv.lib; {
+    description = "Personal task manager for GNOME";
+    homepage = https://wiki.gnome.org/Apps/Todo;
+    license = licenses.gpl3Plus;
+    maintainers = gnome3.maintainers;
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/desktops/gnome-3/default.nix b/pkgs/desktops/gnome-3/default.nix
index 15707575e7f3..ce542e7f88b6 100644
--- a/pkgs/desktops/gnome-3/default.nix
+++ b/pkgs/desktops/gnome-3/default.nix
@@ -30,7 +30,7 @@ lib.makeScope pkgs.newScope (self: with self; {
     nautilus-sendto dconf-editor vinagre gnome-weather gnome-logs
     gnome-maps gnome-characters gnome-calendar accerciser gnome-nettool
     gnome-getting-started-docs gnome-packagekit gnome-software
-    gnome-power-manager gnome-usage
+    gnome-power-manager gnome-todo gnome-usage
   ];
 
   gamesPackages = with gnome3; [ swell-foop lightsoff iagno
@@ -291,6 +291,8 @@ lib.makeScope pkgs.newScope (self: with self; {
 
   gnome-sound-recorder = callPackage ./apps/gnome-sound-recorder { };
 
+  gnome-todo = callPackage ./apps/gnome-todo {};
+
   gnome-weather = callPackage ./apps/gnome-weather { };
 
   nautilus-sendto = callPackage ./apps/nautilus-sendto { };
diff --git a/pkgs/development/compilers/compcert/default.nix b/pkgs/development/compilers/compcert/default.nix
index 51392e23d8cf..631179c483bc 100644
--- a/pkgs/development/compilers/compcert/default.nix
+++ b/pkgs/development/compilers/compcert/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchurl
+{ stdenv, lib, fetchurl, fetchpatch
 , coq, ocamlPackages
 , tools ? stdenv.cc
 }:
@@ -7,11 +7,11 @@ assert lib.versionAtLeast ocamlPackages.ocaml.version "4.02";
 
 stdenv.mkDerivation rec {
   name    = "compcert-${version}";
-  version = "3.2";
+  version = "3.3";
 
   src = fetchurl {
     url    = "http://compcert.inria.fr/release/${name}.tgz";
-    sha256 = "11q4121s0rxva63njjwya7syfx9w0p4hzr6avh8s57vfbrcakc93";
+    sha256 = "16xrqcwak1v1fk5ndx6jf1yvxv3adsr7p7z34gfm2mpggxnq0xwn";
   };
 
   buildInputs = [ coq ]
@@ -19,9 +19,10 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  postPatch = ''
-    sed -i -e 's/8\.6\.1|8\.7\.0|8\.7\.1)/8.6.1|8.7.0|8.7.1|8.7.2)/' configure
-  '';
+  patches = [ (fetchpatch {
+    url = "https://github.com/AbsInt/CompCert/commit/679ecfeaa24c0615fa1999e9582bf2af6a9f35e7.patch";
+   sha256 = "04yrn6dp57aw6lmlr4yssjlx9cxix0mlmaw7gfhwyz5bzqc2za1a";
+  })];
 
   configurePhase = ''
     substituteInPlace ./configure --replace '{toolprefix}gcc' '{toolprefix}cc'
diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix
index a6cfef6f45f6..3164d23ca53e 100644
--- a/pkgs/development/haskell-modules/configuration-nix.nix
+++ b/pkgs/development/haskell-modules/configuration-nix.nix
@@ -264,11 +264,13 @@ self: super: builtins.intersectAttrs super {
       }
     );
 
-  llvm-hs = super.llvm-hs.override { llvm-config = pkgs.llvm; };
-  llvm-hs_6_3_0 = super.llvm-hs_6_3_0.override {
-    llvm-config = pkgs.llvm_6;
-    llvm-hs-pure = super.llvm-hs-pure_6_2_1;
-  };
+  llvm-hs =
+      let dontCheckDarwin = if pkgs.stdenv.isDarwin
+                            then dontCheck
+                            else pkgs.lib.id;
+      in dontCheckDarwin (super.llvm-hs.override {
+        llvm-config = pkgs.llvm_6;
+      });
 
   # Needs help finding LLVM.
   spaceprobe = addBuildTool super.spaceprobe self.llvmPackages.llvm;
diff --git a/pkgs/development/idris-modules/default.nix b/pkgs/development/idris-modules/default.nix
index 25f8dba00b02..0368c00d1238 100644
--- a/pkgs/development/idris-modules/default.nix
+++ b/pkgs/development/idris-modules/default.nix
@@ -153,6 +153,8 @@
 
     protobuf = callPackage ./protobuf.nix {};
 
+    quantities = callPackage ./quantities.nix {};
+
     rationals = callPackage ./rationals.nix {};
 
     recursion_schemes = callPackage ./recursion_schemes.nix {};
diff --git a/pkgs/development/idris-modules/quantities.nix b/pkgs/development/idris-modules/quantities.nix
new file mode 100644
index 000000000000..63cc2184504b
--- /dev/null
+++ b/pkgs/development/idris-modules/quantities.nix
@@ -0,0 +1,22 @@
+{ build-idris-package
+, fetchFromGitHub
+, lib
+}:
+build-idris-package  {
+  name = "quantities";
+  version = "2018-04-17";
+
+  src = fetchFromGitHub {
+    owner = "timjb";
+    repo = "quantities";
+    rev = "76bb872bd89122043083351993140ae26eb91ead";
+    sha256 = "0fv12kdi9089b4kkr6inhqvs2s8x62nv5vqj76wzk8hy0lrzylzj";
+  };
+
+  meta = {
+    description = "Type-safe physical computations and unit conversions in Idris";
+    homepage = https://github.com/timjb/quantities;
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ imuli ];
+  };
+}
diff --git a/pkgs/development/interpreters/elixir/generic-builder.nix b/pkgs/development/interpreters/elixir/generic-builder.nix
index 7d3c6476131d..b4e1cacfe267 100644
--- a/pkgs/development/interpreters/elixir/generic-builder.nix
+++ b/pkgs/development/interpreters/elixir/generic-builder.nix
@@ -40,6 +40,8 @@ in
       rm -vf rebar
       ln -s ${rebar}/bin/rebar rebar
 
+      patchShebangs lib/elixir/generate_app.escript || true
+
       substituteInPlace Makefile \
         --replace "/usr/local" $out
     '';
diff --git a/pkgs/development/libraries/appstream/default.nix b/pkgs/development/libraries/appstream/default.nix
index 61ee182ce627..5e4218852e51 100644
--- a/pkgs/development/libraries/appstream/default.nix
+++ b/pkgs/development/libraries/appstream/default.nix
@@ -1,36 +1,27 @@
 { stdenv, fetchpatch, fetchFromGitHub, meson, ninja, pkgconfig, gettext
 , xmlto, docbook_xsl, docbook_xml_dtd_45, libxslt
 , libstemmer, glib, xapian, libxml2, libyaml, gobjectIntrospection
-, pcre, itstool
+, pcre, itstool, gperf, vala
 }:
 
 stdenv.mkDerivation rec {
   name = "appstream-${version}";
-  version = "0.11.8";
+  version = "0.12.2";
 
   src = fetchFromGitHub {
     owner  = "ximion";
     repo   = "appstream";
     rev    = "APPSTREAM_${stdenv.lib.replaceStrings ["."] ["_"] version}";
-    sha256 = "07vzz57g1p5byj2jfg17y5n3il0g07d9wkiynzwra71mcxar1p08";
+    sha256 = "1g15c4bhyl730rgaiqia3jppraixh05c3yx098lyilidbddxp5xb";
   };
 
-  patches = [
-    # drop this in version 0.11.9 and above
-    (fetchpatch {
-      name   = "define-location-and-soname.patch";
-      url    = "https://github.com/ximion/appstream/commit/3e58f9c9.patch";
-      sha256 = "1ffgbdfg80yq5vahjrvdd4f8xsp32ksm9vyasfmc7hzhx294s78w";
-    })
-  ];
-
   nativeBuildInputs = [
     meson ninja pkgconfig gettext
     libxslt xmlto docbook_xsl docbook_xml_dtd_45
-    gobjectIntrospection itstool
+    gobjectIntrospection itstool vala
   ];
 
-  buildInputs = [ libstemmer pcre glib xapian libxml2 libyaml ];
+  buildInputs = [ libstemmer pcre glib xapian libxml2 libyaml gperf ];
 
   prePatch = ''
     substituteInPlace meson.build \
@@ -43,7 +34,7 @@ stdenv.mkDerivation rec {
   mesonFlags = [
     "-Dapidocs=false"
     "-Ddocs=false"
-    "-Dgir=false"
+    "-Dvapi=true"
   ];
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/libraries/appstream/qt.nix b/pkgs/development/libraries/appstream/qt.nix
index beff83f2365b..c5a251cd5f9f 100644
--- a/pkgs/development/libraries/appstream/qt.nix
+++ b/pkgs/development/libraries/appstream/qt.nix
@@ -2,7 +2,7 @@
 
 stdenv.mkDerivation rec {
   name = "appstream-qt-${version}";
-  inherit (appstream) version src patches prePatch;
+  inherit (appstream) version src prePatch;
 
   buildInputs = appstream.buildInputs ++ [ appstream qtbase ];
 
diff --git a/pkgs/development/libraries/cddlib/default.nix b/pkgs/development/libraries/cddlib/default.nix
index ee56b50e1da5..058ee893c37a 100644
--- a/pkgs/development/libraries/cddlib/default.nix
+++ b/pkgs/development/libraries/cddlib/default.nix
@@ -1,55 +1,33 @@
 { stdenv
-, fetchurl
-, fetchpatch
+, fetchFromGitHub
 , gmp
 , autoreconfHook
+, texlive
 }:
 
 stdenv.mkDerivation rec {
   name = "cddlib-${version}";
-  version = "0.94i";
-  src = let
-    fileVersion = stdenv.lib.replaceStrings ["."] [""] version;
-  in fetchurl {
-    # Might switch to github in the future, see
-    # https://trac.sagemath.org/ticket/21952#comment:20
-    urls = [
-      "http://archive.ubuntu.com/ubuntu/pool/universe/c/cddlib/cddlib_${fileVersion}.orig.tar.gz"
-      "ftp://ftp.math.ethz.ch/users/fukudak/cdd/cddlib-${fileVersion}.tar.gz"
-    ];
-    sha256 = "00zdgiqb91vx6gd2103h3ijij0llspsxc6zz3iw2bll39fvkl4xq";
+  version = "0.94j";
+  src = fetchFromGitHub {
+    owner = "cddlib";
+    repo = "cddlib";
+    rev = "${version}";
+    sha256 = "1z03ljy3rrr0qq5gq54vynnif6fn0xhn05g90nnv0dpyc3ps8lzp";
   };
   buildInputs = [gmp];
   nativeBuildInputs = [
     autoreconfHook
+    texlive.combined.scheme-small # for building the documentation
   ];
-  # compute reduced H and V representation of polytope
-  # this patch is included by most distributions (Debian, Conda, ArchLinux, SageMath)
-  # proposed upstream (no answer yet): https://github.com/cddlib/cddlib/pull/3
-  both_reps_c = (fetchurl {
-    name = "cdd_both_reps.c";
-    url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/sci-libs/cddlib/files/cdd_both_reps.c?id=56bd759df1d0c750a065b8c845e93d5dfa6b549d";
-    sha256 = "0r9yc5bgiz8i72c6vsn2y2mjk5581iw94gji9v7lg16kzzgrk9x0";
-  });
-  preAutoreconf = ''
-    # Required by sage.geometry.polyhedron
-    cp ${both_reps_c} src/cdd_both_reps.c
-    cp ${both_reps_c} src-gmp/cdd_both_reps.c
-  '';
-  patches = [
-    # add the cdd_both_reps binary
-    (fetchpatch {
-      name = "add-cdd_both_reps-binary.patch";
-      url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/sci-libs/cddlib/files/cddlib-094h-add-cdd_both_reps-binary.patch?id=78e3a61a68c916450aa4e5ceecd20041583af901";
-      sha256 = "162ni2fr7dpbdkz0b5nizxq7qr5k1i1d75g0smiylpzfb0hb761a";
-    })
-  ];
-  meta = {
+  # No actual checks yet (2018-05-05), but maybe one day.
+  # Requested here: https://github.com/cddlib/cddlib/issues/25
+  doCheck = true;
+  meta = with stdenv.lib; {
     inherit version;
     description = ''An implementation of the Double Description Method for generating all vertices of a convex polyhedron'';
-    license = stdenv.lib.licenses.gpl2Plus ;
-    maintainers = [stdenv.lib.maintainers.raskin];
-    platforms = stdenv.lib.platforms.linux;
+    license = licenses.gpl2Plus;
+    maintainers = with maintainers; [raskin timokau];
+    platforms = platforms.linux;
     homepage = https://www.inf.ethz.ch/personal/fukudak/cdd_home/index.html;
   };
 }
diff --git a/pkgs/development/libraries/exiv2/default.nix b/pkgs/development/libraries/exiv2/default.nix
index 7f5f19035179..f573a275aaab 100644
--- a/pkgs/development/libraries/exiv2/default.nix
+++ b/pkgs/development/libraries/exiv2/default.nix
@@ -1,11 +1,15 @@
-{ stdenv, fetchurl, fetchpatch, zlib, expat, gettext }:
+{ stdenv, fetchurl, fetchFromGitHub, fetchpatch, zlib, expat, gettext
+, autoconf }:
 
 stdenv.mkDerivation rec {
-  name = "exiv2-0.26";
+  name = "exiv2-0.26.2018.06.09";
 
-  src = fetchurl {
-    url = "http://www.exiv2.org/builds/${name}-trunk.tar.gz";
-    sha256 = "1yza317qxd8yshvqnay164imm0ks7cvij8y8j86p1gqi1153qpn7";
+    #url = "http://www.exiv2.org/builds/${name}-trunk.tar.gz";
+  src = fetchFromGitHub rec {
+    owner = "exiv2";
+    repo  = "exiv2";
+    rev = "4aa57ad";
+    sha256 = "1kblpxbi4wlb0l57xmr7g23zn9adjmfswhs6kcwmd7skwi2yivcd";
   };
 
   patches = [
@@ -16,25 +20,36 @@ stdenv.mkDerivation rec {
           + "/sha512/${sha512}/${patchname}";
       sha512 = "3f9242dbd4bfa9dcdf8c9820243b13dc14990373a800c4ebb6cf7eac5653cfef"
              + "e6f2c47a94fbee4ed24f0d8c2842729d721f6100a2b215e0f663c89bfefe9e32";
-     })
-     (fetchpatch {
-       # many CVEs - see https://github.com/Exiv2/exiv2/pull/120
-       url = "https://patch-diff.githubusercontent.com/raw/Exiv2/exiv2/pull/120.patch";
-       sha256 = "1szl22xmh12hibzaqf2zi8zl377x841m52x4jm5lziw6j8g81sj8";
-       excludes = [ "test/bugfixes-test.sh" ];
-     })
+    })
+    # Two backports from master, submitted as https://github.com/Exiv2/exiv2/pull/398
+    (fetchpatch {
+      name = "CVE-2018-12264.diff";
+      url = "https://github.com/vcunat/exiv2/commit/fd18e853.diff";
+      sha256 = "0y7ahh45lpaiazjnfllndfaa5pyixh6z4kcn2ywp7qy4ra7qpwdr";
+    })
+    (fetchpatch {
+      name = "CVE-2018-12265.diff";
+      url = "https://github.com/vcunat/exiv2/commit/9ed1671bd4.diff";
+      sha256 = "1cn446pfcgsh1bn9vxikkkcy1cqq7ghz2w291h1094ydqg6w7q6w";
+    })
   ];
 
   postPatch = "patchShebangs ./src/svn_version.sh";
 
+  preConfigure = "make config"; # needed because not using tarball
+
   outputs = [ "out" "dev" ];
 
-  nativeBuildInputs = [ gettext ];
+  nativeBuildInputs = [
+    gettext
+    autoconf # needed because not using tarball
+  ];
   propagatedBuildInputs = [ zlib expat ];
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = http://www.exiv2.org/;
     description = "A library and command-line utility to manage image metadata";
-    platforms = stdenv.lib.platforms.all;
+    platforms = platforms.all;
+    license = licenses.gpl2;
   };
 }
diff --git a/pkgs/development/libraries/libunity/default.nix b/pkgs/development/libraries/libunity/default.nix
new file mode 100644
index 000000000000..3d3764e9258b
--- /dev/null
+++ b/pkgs/development/libraries/libunity/default.nix
@@ -0,0 +1,53 @@
+{ stdenv, fetchurl, pkgconfig, automake, autoconf, libtool
+, glib, vala, dee, gobjectIntrospection, libdbusmenu-glib
+, gtk3, intltool, gnome-common, python3, icu }:
+
+stdenv.mkDerivation rec {
+  pname = "libunity";
+  version = "7.1.4";
+
+  name = "${pname}-${version}";
+
+  outputs = [ "out" "dev" ];
+
+  src = fetchurl {
+    url = "https://launchpad.net/ubuntu/+archive/primary/+files/${pname}_${version}+15.10.20151002.orig.tar.gz";
+    sha256 = "1sf98qcjkxfibxk03firnc12dm6il8jzaq5763qam8ydg4li4gij";
+  };
+
+  nativeBuildInputs = [
+    autoconf
+    automake
+    gnome-common
+    gobjectIntrospection
+    intltool
+    libtool
+    pkgconfig
+    python3
+    vala
+  ];
+
+  buildInputs = [
+    glib
+    gtk3
+  ];
+
+  propagatedBuildInputs = [ dee libdbusmenu-glib ];
+
+  preConfigure = "NOCONFIGURE=1 ./autogen.sh";
+
+  configureFlags = [
+    "--disable-static"
+    "--with-pygi-overrides-dir=$(out)/${python3.sitePackages}/gi/overrides"
+  ];
+
+  NIX_LDFLAGS = "-L${icu}/lib";
+
+  meta = with stdenv.lib; {
+    description = "A library for instrumenting and integrating with all aspects of the Unity shell";
+    homepage = https://launchpad.net/libunity;
+    license = licenses.lgpl3;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ worldofpeace ];
+  };
+}
diff --git a/pkgs/development/libraries/oracle-instantclient/default.nix b/pkgs/development/libraries/oracle-instantclient/default.nix
index 56f0cc084d14..a4196e0dc9f0 100644
--- a/pkgs/development/libraries/oracle-instantclient/default.nix
+++ b/pkgs/development/libraries/oracle-instantclient/default.nix
@@ -52,6 +52,9 @@ in stdenv.mkDerivation rec {
     install -Dm644 *.jar $out/share/java
     install -Dm644 sdk/include/* $out/include
     install -Dm644 sdk/demo/* $out/share/${name}/demo
+
+    # PECL::oci8 will not build without this
+    ln -s $out/lib/libclntsh.so.12.1 $out/lib/libclntsh.so
   '';
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/libraries/prototypejs/default.nix b/pkgs/development/libraries/prototypejs/default.nix
new file mode 100644
index 000000000000..a56b14384e5b
--- /dev/null
+++ b/pkgs/development/libraries/prototypejs/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, fetchurl, ... }:
+let
+  version = "1.7.3.0";
+in fetchurl {
+  name = "prototype-${version}.js";
+  url = "https://ajax.googleapis.com/ajax/libs/prototype/${version}/prototype.js";
+  sha256 = "0q43vvrsb22h4jvavs1gk3v4ps61yx9k85b5n6q9mxivhmxprg26";
+
+  meta = with stdenv.lib; {
+    description = "A foundation for ambitious web user interfaces";
+    longDescription = ''
+      Prototype takes the complexity out of client-side web
+      programming. Built to solve real-world problems, it adds
+      useful extensions to the browser scripting environment
+      and provides elegant APIs around the clumsy interfaces
+      of Ajax and the Document Object Model.
+    '';
+    homepage = http://prototypejs.org/;
+    downloadPage = http://prototypejs.org/download/;
+    license = licenses.mit;
+    maintainers = with maintainers; [ das_j ];
+  };
+}
diff --git a/pkgs/development/libraries/science/math/lcalc/default.nix b/pkgs/development/libraries/science/math/lcalc/default.nix
index 6bbd43b0c848..e55244b2a59f 100644
--- a/pkgs/development/libraries/science/math/lcalc/default.nix
+++ b/pkgs/development/libraries/science/math/lcalc/default.nix
@@ -57,6 +57,18 @@ stdenv.mkDerivation rec {
 
     # based on gentoos makefile patch -- fix paths, adhere to flags
     ./makefile.patch
+
+    # (fetchpatch {
+    #   name = "default-double.patch";
+    #   url = "https://github.com/dimpase/lcalc/pull/1/commits/0500c67b6aa1f492715591669f6647c8f7a3ea59.patch";
+    #   sha256 = "0dqwmxpm9wb53qbypsyfkgsvk2f8nf67sydphd4dkc2vw4yz6vla";
+    # })
+
+    (fetchpatch {
+      name = "c++11.patch";
+      url = "https://git.archlinux.org/svntogit/community.git/plain/trunk/lcalc-c++11.patch?h=packages/lcalc&id=3607b97df5a8c231191115b0cb5c62426b339e71";
+      sha256 = "1ccrl61lv2vvx8ggldq54m5d0n1iy6mym7qz0i8nj6yj0dshnpk3";
+    })
   ];
 
   installFlags = [
diff --git a/pkgs/development/libraries/science/math/libbraiding/default.nix b/pkgs/development/libraries/science/math/libbraiding/default.nix
new file mode 100644
index 000000000000..be650f3c3ce8
--- /dev/null
+++ b/pkgs/development/libraries/science/math/libbraiding/default.nix
@@ -0,0 +1,34 @@
+{ stdenv
+, fetchFromGitHub
+, autoreconfHook
+}:
+
+stdenv.mkDerivation rec {
+  version = "1.0";
+  name = "libbraiding-${version}";
+
+  src = fetchFromGitHub {
+    owner = "miguelmarco";
+    repo = "libbraiding";
+    rev = version;
+    sha256 = "0l68rikfr7k2l547gb3pp3g8cj5zzxwipm79xrb5r8ffj466ydxg";
+  };
+
+  nativeBuildInputs = [
+    autoreconfHook
+  ];
+
+  # no tests included for now (2018-08-05), but can't hurt to activate
+  doCheck = true;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/miguelmarco/libbraiding/;
+    description = "C++ library for computations on braid groups";
+    longDescription = ''
+      A library to compute several properties of braids, including centralizer and conjugacy check.
+    '';
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ timokau ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/development/libraries/science/math/libhomfly/default.nix b/pkgs/development/libraries/science/math/libhomfly/default.nix
new file mode 100644
index 000000000000..e96ee475d7d2
--- /dev/null
+++ b/pkgs/development/libraries/science/math/libhomfly/default.nix
@@ -0,0 +1,35 @@
+{ stdenv
+, fetchFromGitHub
+, autoreconfHook
+, boehmgc
+}:
+
+stdenv.mkDerivation rec {
+  version = "1.02r5";
+  name = "llibhomfly-${version}";
+
+  src = fetchFromGitHub {
+    owner = "miguelmarco";
+    repo = "libhomfly";
+    rev = version;
+    sha256 = "1szv8iwlhvmy3saigi15xz8vgch92p2lbsm6440v5s8vxj455bvd";
+  };
+
+  buildInputs = [
+    boehmgc
+  ];
+
+  nativeBuildInputs = [
+    autoreconfHook
+  ];
+
+  doCheck = true;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/miguelmarco/libhomfly/;
+    description = "Library to compute the homfly polynomial of knots and links";
+    license = licenses.unlicense;
+    maintainers = with maintainers; [ timokau ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/development/python-modules/basiciw/default.nix b/pkgs/development/python-modules/basiciw/default.nix
new file mode 100644
index 000000000000..0d25d7cdbe98
--- /dev/null
+++ b/pkgs/development/python-modules/basiciw/default.nix
@@ -0,0 +1,30 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, gcc
+, wirelesstools
+, isPy27
+, isPyPy
+}:
+
+buildPythonPackage rec {
+  pname = "basiciw";
+  version = "0.2.2";
+
+  disabled = isPy27 || isPyPy;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1ajmflvvlkflrcmqmkrx0zaira84z8kv4ssb2jprfwvjh8vfkysb";
+  };
+
+  buildInputs = [ gcc ];
+  propagatedBuildInputs = [ wirelesstools ];
+
+  meta = {
+    description = "Get info about wireless interfaces using libiw";
+    homepage = https://github.com/enkore/basiciw;
+    platforms = lib.platforms.linux;
+    license = lib.licenses.gpl2;
+  };
+}
diff --git a/pkgs/development/python-modules/beaker/default.nix b/pkgs/development/python-modules/beaker/default.nix
new file mode 100644
index 000000000000..7a17fd0f1d0a
--- /dev/null
+++ b/pkgs/development/python-modules/beaker/default.nix
@@ -0,0 +1,43 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, nose
+, mock
+, webtest
+, sqlalchemy
+, pycrypto
+, isPy27
+, funcsigs
+, pycryptopp
+}:
+
+buildPythonPackage rec {
+  pname = "Beaker";
+  version = "1.8.0";
+
+  # The pypy release do not contains the tests
+  src = fetchFromGitHub {
+    owner = "bbangert";
+    repo = "beaker";
+    rev = "${version}";
+    sha256 = "17yfr7a307n8rdl09was4j60xqk2s0hk0hywdkigrpj4qnw0is7g";
+  };
+
+  buildInputs =
+    [ nose
+      mock
+      webtest
+    ];
+  propagatedBuildInputs = [
+    sqlalchemy
+    pycrypto
+  ] ++ lib.optionals (isPy27) [
+    funcsigs
+    pycryptopp
+  ];
+
+  meta = {
+    description = "A Session and Caching library with WSGI Middleware";
+    maintainers = with lib.maintainers; [ garbas domenkozar ];
+  };
+}
\ No newline at end of file
diff --git a/pkgs/development/python-modules/ipython/5.nix b/pkgs/development/python-modules/ipython/5.nix
index f2066fee2a4a..36f581c98afb 100644
--- a/pkgs/development/python-modules/ipython/5.nix
+++ b/pkgs/development/python-modules/ipython/5.nix
@@ -2,6 +2,7 @@
 , stdenv
 , buildPythonPackage
 , fetchPypi
+, fetchpatch
 # Build dependencies
 , glibcLocales
 # Test dependencies
@@ -36,6 +37,16 @@ buildPythonPackage rec {
     substituteInPlace setup.py --replace "'gnureadline'" " "
   '';
 
+  patches = [
+    # improve cython support, needed by sage, accepted upstream
+    # https://github.com/ipython/ipython/pull/11139
+    (fetchpatch {
+      name = "signature-use-inspect.patch";
+      url = "https://github.com/ipython/ipython/commit/8d399b98d3ed5c765835594100c4d36fb2f739dc.patch";
+      sha256 = "1r7v9clwwbskmj4y160vcj6g0vzqbvnj4y1bm2n4bskafapm42g0";
+    })
+  ];
+
   buildInputs = [ glibcLocales ];
 
   checkInputs = [ nose pygments testpath ] ++ lib.optional isPy27 mock;
diff --git a/pkgs/development/python-modules/marionette-harness/mozlog.nix b/pkgs/development/python-modules/marionette-harness/mozlog.nix
index ce24fd48dd4b..b8d0c077d664 100644
--- a/pkgs/development/python-modules/marionette-harness/mozlog.nix
+++ b/pkgs/development/python-modules/marionette-harness/mozlog.nix
@@ -16,7 +16,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "af3a3252bc58f8642a641601ba59096c22e4aa49cdc1ed4b0df2314f4f027f0d";
+    sha256 = "00x28z6diw06gakb5isbfha5z2n63yyncv4za303nsgzxvlihmx0";
   };
 
   propagatedBuildInputs = [ blessings mozterm six ];
diff --git a/pkgs/development/python-modules/mozterm/default.nix b/pkgs/development/python-modules/mozterm/default.nix
index 358b21893fa6..c7f2b4cbc349 100644
--- a/pkgs/development/python-modules/mozterm/default.nix
+++ b/pkgs/development/python-modules/mozterm/default.nix
@@ -1,4 +1,4 @@
-{ lib, buildPythonPackage, fetchPypi, isPy3k }:
+{ lib, buildPythonPackage, fetchPypi, isPy3k, six }:
 
 buildPythonPackage rec {
   pname = "mozterm";
@@ -7,6 +7,8 @@ buildPythonPackage rec {
   # name 'unicode' is not defined
   disabled = isPy3k;
 
+  propagatedBuildInputs = [six];
+
   src = fetchPypi {
     inherit pname version;
     sha256 = "b1e91acec188de07c704dbb7b0100a7be5c1e06567b3beb67f6ea11d00a483a4";
diff --git a/pkgs/development/ruby-modules/solargraph/Gemfile.lock b/pkgs/development/ruby-modules/solargraph/Gemfile.lock
index b8bf4315c009..54a27076b7df 100644
--- a/pkgs/development/ruby-modules/solargraph/Gemfile.lock
+++ b/pkgs/development/ruby-modules/solargraph/Gemfile.lock
@@ -11,22 +11,22 @@ GEM
     nokogiri (1.8.4)
       mini_portile2 (~> 2.3.0)
     parallel (1.12.1)
-    parser (2.5.1.0)
+    parser (2.5.1.2)
       ast (~> 2.4.0)
     powerpack (0.1.2)
     rainbow (3.0.0)
     reverse_markdown (1.1.0)
       nokogiri
-    rubocop (0.58.0)
+    rubocop (0.58.2)
       jaro_winkler (~> 1.5.1)
       parallel (~> 1.10)
-      parser (>= 2.5)
+      parser (>= 2.5, != 2.5.1.1)
       powerpack (~> 0.1)
       rainbow (>= 2.2.2, < 4.0)
       ruby-progressbar (~> 1.7)
       unicode-display_width (~> 1.0, >= 1.0.1)
     ruby-progressbar (1.9.0)
-    solargraph (0.23.3)
+    solargraph (0.23.6)
       coderay (~> 1.1)
       eventmachine (~> 1.2, >= 1.2.5)
       htmlentities (~> 4.3, >= 4.3.4)
@@ -40,7 +40,7 @@ GEM
     thor (0.20.0)
     tilt (2.0.8)
     unicode-display_width (1.4.0)
-    yard (0.9.14)
+    yard (0.9.15)
 
 PLATFORMS
   ruby
diff --git a/pkgs/development/ruby-modules/solargraph/gemset.nix b/pkgs/development/ruby-modules/solargraph/gemset.nix
index 1205b730f212..f78f359e1582 100644
--- a/pkgs/development/ruby-modules/solargraph/gemset.nix
+++ b/pkgs/development/ruby-modules/solargraph/gemset.nix
@@ -76,10 +76,10 @@
     dependencies = ["ast"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1af7aa1c2npi8dkshgm3f8qyacabm94ckrdz7b8vd3f8zzswqzp9";
+      sha256 = "1zp89zg7iypncszxsjp8kiccrpbdf728jl449g6cnfkz990fyb5k";
       type = "gem";
     };
-    version = "2.5.1.0";
+    version = "2.5.1.2";
   };
   powerpack = {
     source = {
@@ -110,10 +110,10 @@
     dependencies = ["jaro_winkler" "parallel" "parser" "powerpack" "rainbow" "ruby-progressbar" "unicode-display_width"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "091simr4pvxnkm472ixk5lqbnhgznvmhjpjf98ppbx1r68a4mcp3";
+      sha256 = "0fc1fw9z98qd91ipsh9hdvpcb401qvkhw518s35l8a67sv4vdnj3";
       type = "gem";
     };
-    version = "0.58.0";
+    version = "0.58.2";
   };
   ruby-progressbar = {
     source = {
@@ -127,10 +127,10 @@
     dependencies = ["coderay" "eventmachine" "htmlentities" "kramdown" "parser" "reverse_markdown" "rubocop" "thor" "tilt" "yard"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1145g6x04fwmg8n51lsk7ybig31scndlj1i2i4lbrj9621bbqxfz";
+      sha256 = "01lh5vibr277vhhrgk6zl09ivb262c1qpk54ahzhc40zs309842b";
       type = "gem";
     };
-    version = "0.23.3";
+    version = "0.23.6";
   };
   thor = {
     source = {
@@ -159,9 +159,9 @@
   yard = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "08kww2m1izjq56q2va2my0x3f3f0xsg6f07b6sgb4nl0scr6y10q";
+      sha256 = "145pbc0x95s6x296kh1wp5ykwy6srfcz946dgj83s35g8p52z4q4";
       type = "gem";
     };
-    version = "0.9.14";
+    version = "0.9.15";
   };
 }
\ No newline at end of file
diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix
index bf8dbf671c01..dae90569a90b 100644
--- a/pkgs/development/tools/yarn/default.nix
+++ b/pkgs/development/tools/yarn/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "yarn-${version}";
-  version = "1.9.2";
+  version = "1.9.4";
 
   src = fetchzip {
     url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz";
-    sha256 = "0bk006zs1bk6nwj9x07ry314fgxi21sk79h1paljbs6yzrv62h4g";
+    sha256 = "0lxncqvz66167ijhsi76ds2yp8140d9ywn89y5vm92010irsgs20";
   };
 
   buildInputs = [ nodejs ];
diff --git a/pkgs/misc/emulators/caprice32/default.nix b/pkgs/misc/emulators/caprice32/default.nix
index c0c3b40f6b65..42b8e5229e99 100644
--- a/pkgs/misc/emulators/caprice32/default.nix
+++ b/pkgs/misc/emulators/caprice32/default.nix
@@ -3,14 +3,14 @@
 stdenv.mkDerivation rec {
 
   repo = "caprice32";
-  version = "unstable-2018-02-10";
-  rev = "53de69543300f81af85df32cbd21bb5c68cab61e";
+  version = "unstable-2018-03-05";
+  rev = "317fe638111e245d67e301f6f295094d3c859a70";
   name = "${repo}-${version}";
 
   src = fetchFromGitHub {
     inherit rev repo;
     owner = "ColinPitrat";
-    sha256 = "12yv56blm49qmshpk4mgc802bs51wv2ra87hmcbf2wxma39c45fy";
+    sha256 = "1bywpmkizixcnr057k8zq9nlw0zhcmwkiriln0krgdcm7d3h9b86";
   };
 
   postPatch = "substituteInPlace cap32.cfg --replace /usr/local $out";
diff --git a/pkgs/misc/tmux-plugins/default.nix b/pkgs/misc/tmux-plugins/default.nix
index b29565d01ecb..6d8a5a40c162 100644
--- a/pkgs/misc/tmux-plugins/default.nix
+++ b/pkgs/misc/tmux-plugins/default.nix
@@ -100,6 +100,15 @@ in rec {
     dependencies = [ pkgs.fpp ];
   };
 
+  fzf-tmux-url = buildTmuxPluginFrom2Nix {
+    pluginName = "fzf-tmux-url";
+    src = fetchgit {
+      url = "https://github.com/wfxr/tmux-fzf-url";
+      rev = "ecd518eec1067234598c01e655b048ff9d06ef2f";
+      sha256 = "0png8hdv91y2nivq5vdii2192mb2qcrkwwn69lzxrdnbfa27qrgv";
+    };
+  };
+
   logging = buildTmuxPluginFrom2Nix {
     pluginName = "logging";
     src = fetchgit {
diff --git a/pkgs/misc/urbit/default.nix b/pkgs/misc/urbit/default.nix
index df13c15562dd..e356e83436dd 100644
--- a/pkgs/misc/urbit/default.nix
+++ b/pkgs/misc/urbit/default.nix
@@ -1,39 +1,24 @@
-{ stdenv, fetchFromGitHub, gcc, gmp, libsigsegv, openssl, automake, autoconf, ragel,
-  cmake, re2c, libtool, ncurses, perl, zlib, python2, curl }:
+{ stdenv, fetchFromGitHub, curl, git, gmp, libsigsegv, meson, ncurses, ninja
+, openssl, pkgconfig, re2c, zlib
+}:
 
 stdenv.mkDerivation rec {
   name = "urbit-${version}";
-  version = "0.4.5";
+  version = "0.6.0";
 
   src = fetchFromGitHub {
     owner = "urbit";
     repo = "urbit";
-    rev = "v${version}";
-    sha256 = "1zgxgqbz74nsgfyrvsnjj6xxpb64mrnby7bb5qy733sy04gmzgik";
+    rev = "urbit-${version}";
+    sha256 = "158mz6c6y5z1b6piid8hvrl5mcqh8q1ny185gz51jayia51azmgs";
+    fetchSubmodules = true;
   };
 
-  buildInputs = with stdenv.lib; [
-    gcc gmp libsigsegv openssl automake autoconf ragel cmake re2c libtool
-    ncurses perl zlib python2 curl
-  ];
+  nativeBuildInputs = [ pkgconfig ninja meson ];
+  buildInputs = [ curl git gmp libsigsegv ncurses openssl re2c zlib ];
 
-  # uses 'readdir_r' deprecated by glibc 2.24
-  NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations";
-
-  configurePhase = ''
-    :
-  '';
-
-  buildPhase = ''
-    sed -i 's/-lcurses/-lncurses/' Makefile
-    mkdir -p $out
-    cp -r . $out/
-    cd $out
-    make
-  '';
-
-  installPhase = ''
-    :
+  postPatch = ''
+    patchShebangs .
   '';
 
   meta = with stdenv.lib; {
diff --git a/pkgs/os-specific/linux/bluez/default.nix b/pkgs/os-specific/linux/bluez/default.nix
index b095096caa76..3882a7425869 100644
--- a/pkgs/os-specific/linux/bluez/default.nix
+++ b/pkgs/os-specific/linux/bluez/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchurl, pkgconfig, dbus, glib, alsaLib,
-  pythonPackages, readline, udev, libical,
+  python3, readline, udev, libical,
   systemd, enableWiimote ? false, enableMidi ? false }:
 
 stdenv.mkDerivation rec {
@@ -10,12 +10,12 @@ stdenv.mkDerivation rec {
     sha256 = "048r91vx9gs5nwwbah2s0xig04nwk14c5s0vb7qmaqdvighsmz2z";
   };
 
-  pythonPath = with pythonPackages; [
+  pythonPath = with python3.pkgs; [
     dbus-python pygobject2 pygobject3 recursivePthLoader
   ];
 
   buildInputs = [
-    dbus glib alsaLib pythonPackages.python pythonPackages.wrapPython
+    dbus glib alsaLib python3 python3.pkgs.wrapPython
     readline udev libical
   ];
 
diff --git a/pkgs/servers/foundationdb/default.nix b/pkgs/servers/foundationdb/default.nix
index 7c7da3612465..265255c2f78a 100644
--- a/pkgs/servers/foundationdb/default.nix
+++ b/pkgs/servers/foundationdb/default.nix
@@ -88,7 +88,7 @@ let
         separateDebugInfo = true;
         enableParallelBuilding = true;
 
-        makeFlags = [ "all" "fdb_java" ]
+        makeFlags = [ "all" "fdb_java" "fdb_python" ]
           # Don't compile FDBLibTLS if we don't need it in 6.0 or later;
           # it gets statically linked in
           ++ lib.optional (!lib.versionAtLeast version "6.0") [ "fdb_c" ]
@@ -106,17 +106,28 @@ let
 
         installPhase = ''
           mkdir -vp $out/{bin,libexec/plugins} $lib/{lib,share/java} $dev/include/foundationdb
+          mkdir -vp $python/lib/${python.libPrefix}/site-packages
 
-          cp -v ./lib/libfdb_c.so     $lib/lib
         '' + lib.optionalString (!lib.versionAtLeast version "6.0") ''
+          # we only copy the TLS library on < 6.0, since it's compiled-in otherwise
           cp -v ./lib/libFDBLibTLS.so $out/libexec/plugins/FDBLibTLS.so
         '' + ''
 
+          # C API
+          cp -v ./lib/libfdb_c.so                           $lib/lib
           cp -v ./bindings/c/foundationdb/fdb_c.h           $dev/include/foundationdb
           cp -v ./bindings/c/foundationdb/fdb_c_options.g.h $dev/include/foundationdb
 
+          # java
           cp -v ./bindings/java/foundationdb-client.jar     $lib/share/java/fdb-java.jar
 
+          # python
+          rm -f ./bindings/python/fdb/*.pth # remove useless files
+          cp -R ./bindings/python/fdb                       $python/lib/${python.libPrefix}/site-packages/fdb
+          # symlink a copy of the shared object into place, so that impl.py can load it
+          ln -sv $lib/lib/libfdb_c.so                       $python/lib/${python.libPrefix}/site-packages/fdb/libfdb_c.so
+
+          # binaries
           for x in fdbbackup fdbcli fdbserver fdbmonitor; do
             cp -v "./bin/$x" $out/bin;
           done
@@ -128,7 +139,7 @@ let
           ln -sfv $out/bin/fdbbackup $out/libexec/backup_agent
         '';
 
-        outputs = [ "out" "lib" "dev" ];
+        outputs = [ "out" "lib" "dev" "python" ];
 
         meta = with stdenv.lib; {
           description = "Open source, distributed, transactional key-value store";
@@ -148,16 +159,15 @@ in with builtins; {
   };
 
   foundationdb52 = makeFdb rec {
-    version = "5.2.6";
+    version = "5.2.8";
     branch  = "release-5.2";
-    rev     = "refs/tags/v5.2.6"; # seemed to be tagged incorrectly
-    sha256  = "1q3lq1hqq0f53n51gd4cw5cpayyw65dmkfplhsw1m5mghymzmskk";
+    sha256  = "1kbmmhk2m9486r4kyjlc7bb3wd50204i0p6dxcmvl6pbp1bs0wlb";
   };
 
   foundationdb60 = makeFdb rec {
-    version = "6.0.3pre2446_${substring 0 8 rev}";
+    version = "6.0.4pre2497_${substring 0 8 rev}";
     branch  = "release-6.0";
-    rev     = "dd5481fb60ee1652986b2a028b31dcbb6cb171b5";
-    sha256  = "0mhlb728badk1h3410jbhy7f48m3jjnjna26wwyw5680xz72d6dm";
+    rev     = "73d64cb244714c19bcc651122f6e7a9236aa11b5";
+    sha256  = "1jzmrf9kj0brqddlmxvzhj27r6843790jnqwkv1s3ri21fqb3hs7";
   };
 }
diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index 5f41dbbdfa19..0d140387e4e8 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -2,7 +2,7 @@
 # Do not edit!
 
 {
-  version = "0.74.2";
+  version = "0.75.1";
   components = {
     "abode" = ps: with ps; [  ];
     "ads" = ps: with ps; [  ];
@@ -47,6 +47,7 @@
     "august" = ps: with ps; [  ];
     "auth" = ps: with ps; [ aiohttp-cors ];
     "auth.indieauth" = ps: with ps; [  ];
+    "auth.login_flow" = ps: with ps; [  ];
     "automation" = ps: with ps; [  ];
     "automation.event" = ps: with ps; [  ];
     "automation.homeassistant" = ps: with ps; [  ];
@@ -128,6 +129,7 @@
     "binary_sensor.skybell" = ps: with ps; [  ];
     "binary_sensor.sleepiq" = ps: with ps; [  ];
     "binary_sensor.spc" = ps: with ps; [  ];
+    "binary_sensor.tahoma" = ps: with ps; [  ];
     "binary_sensor.tapsaff" = ps: with ps; [  ];
     "binary_sensor.tcp" = ps: with ps; [  ];
     "binary_sensor.tellduslive" = ps: with ps; [  ];
@@ -225,10 +227,12 @@
     "climate.proliphix" = ps: with ps; [  ];
     "climate.radiotherm" = ps: with ps; [  ];
     "climate.sensibo" = ps: with ps; [  ];
+    "climate.spider" = ps: with ps; [  ];
     "climate.tado" = ps: with ps; [  ];
     "climate.tesla" = ps: with ps; [  ];
     "climate.toon" = ps: with ps; [  ];
     "climate.touchline" = ps: with ps; [  ];
+    "climate.tuya" = ps: with ps; [  ];
     "climate.venstar" = ps: with ps; [  ];
     "climate.vera" = ps: with ps; [  ];
     "climate.wink" = ps: with ps; [  ];
@@ -259,6 +263,8 @@
     "counter" = ps: with ps; [  ];
     "cover" = ps: with ps; [  ];
     "cover.abode" = ps: with ps; [  ];
+    "cover.aladdin_connect" = ps: with ps; [  ];
+    "cover.brunt" = ps: with ps; [  ];
     "cover.command_line" = ps: with ps; [  ];
     "cover.demo" = ps: with ps; [  ];
     "cover.garadget" = ps: with ps; [  ];
@@ -282,6 +288,7 @@
     "cover.tellduslive" = ps: with ps; [  ];
     "cover.tellstick" = ps: with ps; [  ];
     "cover.template" = ps: with ps; [  ];
+    "cover.tuya" = ps: with ps; [  ];
     "cover.velbus" = ps: with ps; [  ];
     "cover.vera" = ps: with ps; [  ];
     "cover.wink" = ps: with ps; [  ];
@@ -375,6 +382,7 @@
     "fan.isy994" = ps: with ps; [  ];
     "fan.mqtt" = ps: with ps; [ paho-mqtt ];
     "fan.template" = ps: with ps; [  ];
+    "fan.tuya" = ps: with ps; [  ];
     "fan.velbus" = ps: with ps; [  ];
     "fan.wink" = ps: with ps; [  ];
     "fan.xiaomi_miio" = ps: with ps; [ construct ];
@@ -482,6 +490,7 @@
     "light.enocean" = ps: with ps; [  ];
     "light.eufy" = ps: with ps; [  ];
     "light.flux_led" = ps: with ps; [  ];
+    "light.futurenow" = ps: with ps; [  ];
     "light.greenwave" = ps: with ps; [  ];
     "light.group" = ps: with ps; [  ];
     "light.hive" = ps: with ps; [  ];
@@ -518,6 +527,7 @@
     "light.rpi_gpio_pwm" = ps: with ps; [  ];
     "light.scsgate" = ps: with ps; [  ];
     "light.sensehat" = ps: with ps; [  ];
+    "light.sisyphus" = ps: with ps; [  ];
     "light.skybell" = ps: with ps; [  ];
     "light.tellduslive" = ps: with ps; [  ];
     "light.tellstick" = ps: with ps; [  ];
@@ -620,6 +630,7 @@
     "media_player.russound_rio" = ps: with ps; [  ];
     "media_player.russound_rnet" = ps: with ps; [  ];
     "media_player.samsungtv" = ps: with ps; [ wakeonlan ];
+    "media_player.sisyphus" = ps: with ps; [  ];
     "media_player.snapcast" = ps: with ps; [  ];
     "media_player.songpal" = ps: with ps; [  ];
     "media_player.sonos" = ps: with ps; [ soco ];
@@ -770,6 +781,7 @@
     "scene.litejet" = ps: with ps; [  ];
     "scene.lutron_caseta" = ps: with ps; [  ];
     "scene.tahoma" = ps: with ps; [  ];
+    "scene.tuya" = ps: with ps; [  ];
     "scene.velux" = ps: with ps; [  ];
     "scene.vera" = ps: with ps; [  ];
     "scene.wink" = ps: with ps; [  ];
@@ -896,6 +908,7 @@
     "sensor.loopenergy" = ps: with ps; [  ];
     "sensor.luftdaten" = ps: with ps; [ luftdaten ];
     "sensor.lyft" = ps: with ps; [  ];
+    "sensor.magicseaweed" = ps: with ps; [  ];
     "sensor.melissa" = ps: with ps; [  ];
     "sensor.metoffice" = ps: with ps; [  ];
     "sensor.mfi" = ps: with ps; [  ];
@@ -1048,6 +1061,7 @@
     "shell_command" = ps: with ps; [  ];
     "shiftr" = ps: with ps; [ paho-mqtt ];
     "shopping_list" = ps: with ps; [ aiohttp-cors ];
+    "sisyphus" = ps: with ps; [  ];
     "skybell" = ps: with ps; [  ];
     "sleepiq" = ps: with ps; [  ];
     "smappee" = ps: with ps; [  ];
@@ -1055,6 +1069,7 @@
     "sonos" = ps: with ps; [ soco ];
     "spaceapi" = ps: with ps; [ aiohttp-cors ];
     "spc" = ps: with ps; [ websockets ];
+    "spider" = ps: with ps; [  ];
     "splunk" = ps: with ps; [  ];
     "statsd" = ps: with ps; [ statsd ];
     "sun" = ps: with ps; [  ];
@@ -1128,6 +1143,7 @@
     "switch.skybell" = ps: with ps; [  ];
     "switch.smappee" = ps: with ps; [  ];
     "switch.snmp" = ps: with ps; [ pysnmp ];
+    "switch.spider" = ps: with ps; [  ];
     "switch.tahoma" = ps: with ps; [  ];
     "switch.tellduslive" = ps: with ps; [  ];
     "switch.tellstick" = ps: with ps; [  ];
diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix
index 700f8ed78627..643b0d70a26c 100644
--- a/pkgs/servers/home-assistant/default.nix
+++ b/pkgs/servers/home-assistant/default.nix
@@ -1,4 +1,4 @@
-{ lib, fetchFromGitHub, python3
+{ lib, fetchFromGitHub, fetchpatch, python3
 
 # Look up dependencies of specified components in component-packages.nix
 , extraComponents ? []
@@ -29,10 +29,10 @@ let
         };
       });
       voluptuous = super.voluptuous.overridePythonAttrs (oldAttrs: rec {
-        version = "0.11.1";
+        version = "0.11.5";
         src = oldAttrs.src.override {
           inherit version;
-          sha256 = "af7315c9fa99e0bfd195a21106c82c81619b42f0bd9b6e287b797c6b6b6a9918";
+          sha256 = "567a56286ef82a9d7ae0628c5842f65f516abcb496e74f3f59f1d7b28df314ef";
         };
       });
       attrs = super.attrs.overridePythonAttrs (oldAttrs: rec {
@@ -74,7 +74,7 @@ let
   extraBuildInputs = extraPackages py.pkgs;
 
   # Don't forget to run parse-requirements.py after updating
-  hassVersion = "0.74.2";
+  hassVersion = "0.75.1";
 
 in with py.pkgs; buildPythonApplication rec {
   pname = "homeassistant";
@@ -89,7 +89,16 @@ in with py.pkgs; buildPythonApplication rec {
     owner = "home-assistant";
     repo = "home-assistant";
     rev = version;
-    sha256 = "02wdvkcl4zjw009a5ylblk5blpf5rhlvch8vsg4cx07sj9xgjzmw";
+    sha256 = "1slm2r48yh4l57wnvalin6mnk3id2phsaqpd4qy0c0ksqc61ffqk";
+  };
+
+  # Upgrade voluptuous to 0.11.5
+  # Needed because voluptuous-0.11.3 requires pypandoc
+  # See https://github.com/home-assistant/home-assistant/pull/15830#issuecomment-410485197
+  patches = fetchpatch {
+    name = "upgrade-voluptuous.patch";
+    url = https://github.com/home-assistant/home-assistant/commit/9ea3be4dc112fb45544fa089cb367c7f4f91b5f0.patch;
+    sha256 = "0wacs9aifdysw6jpz86d6cqah8spi48pwwcbydj9l8zxndzqp6na";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix
index 4a4201b67330..864a91683eea 100644
--- a/pkgs/servers/home-assistant/frontend.nix
+++ b/pkgs/servers/home-assistant/frontend.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "home-assistant-frontend";
-  version = "20180720.0";
+  version = "20180804.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4a9d570cfc1d6b0e4b914897197d6772d48aa38b10202a648e79c5fb2a6a0293";
+    sha256 = "50a9e74efe2b56fbc34fba07205829e0ea77315183e85c235d177cabff3b62ee";
   };
 
   propagatedBuildInputs = [ user-agents ];
diff --git a/pkgs/servers/http/nginx/mainline.nix b/pkgs/servers/http/nginx/mainline.nix
index 5afd73c88686..ecde2430f522 100644
--- a/pkgs/servers/http/nginx/mainline.nix
+++ b/pkgs/servers/http/nginx/mainline.nix
@@ -1,6 +1,6 @@
 { callPackage, ... }@args:
 
 callPackage ./generic.nix (args // {
-  version = "1.15.1";
-  sha256 = "0q2lkpnfqf74p22vrcldx0gcnss3is7rnp54fgpvhcpqsxc6h867";
+  version = "1.15.2";
+  sha256 = "145dcypq8dqc5as03iy1ycwifwynq9p4i8m56fn7g0myryp0kfpf";
 })
diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 9f2cd319f0e7..0501bcc9e58b 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -94,6 +94,16 @@
     '';
   };
 
+  lua-upstream = {
+    src = fetchFromGitHub {
+      owner = "openresty";
+      repo = "lua-upstream-nginx-module";
+      rev = "v0.07";
+      sha256 = "1gqccg8airli3i9103zv1zfwbjm27h235qjabfbfqk503rjamkpk";
+    };
+    inputs = [ pkgs.luajit ];
+  };
+
   modsecurity = {
     src = "${pkgs.modsecurity_standalone.nginx}/nginx/modsecurity";
     inputs = [ pkgs.curl pkgs.apr pkgs.aprutil pkgs.apacheHttpd pkgs.yajl ];
@@ -215,6 +225,33 @@
     };
   };
 
+  stream-sts = {
+    src = fetchFromGitHub {
+      owner = "vozlt";
+      repo = "nginx-module-stream-sts";
+      rev = "v0.1.1";
+      sha256 = "1jdj1kik6l3rl9nyx61xkqk7hmqbncy0rrqjz3dmjqsz92y8zaya";
+    };
+  };
+
+  sts = {
+    src = fetchFromGitHub {
+      owner = "vozlt";
+      repo = "nginx-module-sts";
+      rev = "v0.1.1";
+      sha256 = "0nvb29641x1i7mdbydcny4qwlvdpws38xscxirajd2x7nnfdflrk";
+    };
+  };
+
+  sysguard = {
+    src = fetchFromGitHub {
+      owner = "vozlt";
+      repo = "nginx-module-sysguard";
+      rev = "e512897f5aba4f79ccaeeebb51138f1704a58608";
+      sha256 = "19c6w6wscbq9phnx7vzbdf4ay6p2ys0g7kp2rmc9d4fb53phrhfx";
+    };
+  };
+
   upstream-check = {
     src = fetchFromGitHub {
       owner = "yaoweibin";
@@ -234,6 +271,15 @@
     inputs = [ pkgs.msgpuck.dev pkgs.yajl ];
   };
 
+  url = {
+    src = fetchFromGitHub {
+      owner = "vozlt";
+      repo = "nginx-module-url";
+      rev = "9299816ca6bc395625c3683fbd2aa7b916bfe91e";
+      sha256 = "0mk1gjmfnry6hgdsnlavww9bn7223idw50jlkhh5k00q5509w4ip";
+    };
+  };
+
   vts = {
     src = fetchFromGitHub {
       owner = "vozlt";
diff --git a/pkgs/servers/mpd/default.nix b/pkgs/servers/mpd/default.nix
index 6ca338471119..82c159ebc82a 100644
--- a/pkgs/servers/mpd/default.nix
+++ b/pkgs/servers/mpd/default.nix
@@ -27,7 +27,7 @@
 , opusSupport ? true, libopus
 , soundcloudSupport ? true, yajl
 , nfsSupport ? true, libnfs
-, smbSupport ? true, smbclient
+, smbSupport ? true, samba
 }:
 
 assert avahiSupport -> avahi != null && dbus != null;
@@ -85,7 +85,7 @@ in stdenv.mkDerivation rec {
     ++ opt opusSupport libopus
     ++ opt soundcloudSupport yajl
     ++ opt (!stdenv.isDarwin && nfsSupport) libnfs
-    ++ opt (!stdenv.isDarwin && smbSupport) smbclient;
+    ++ opt (!stdenv.isDarwin && smbSupport) samba;
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
 
diff --git a/pkgs/servers/sql/mariadb/default.nix b/pkgs/servers/sql/mariadb/default.nix
index 7c1b6cc8702c..121e42f7a978 100644
--- a/pkgs/servers/sql/mariadb/default.nix
+++ b/pkgs/servers/sql/mariadb/default.nix
@@ -22,14 +22,14 @@ galeraLibs = buildEnv {
 };
 
 common = rec { # attributes common to both builds
-  version = "10.3.8";
+  version = "10.2.16";
 
   src = fetchurl {
     urls = [
       "https://downloads.mariadb.org/f/mariadb-${version}/source/mariadb-${version}.tar.gz"
       "https://downloads.mariadb.com/MariaDB/mariadb-${version}/source/mariadb-${version}.tar.gz"
     ];
-    sha256 = "1f0syfrv0my7sm8cbpic00ldy90psimy8yvm0ld82bfi2isw3gih";
+    sha256 = "1i2dwpp96ywjk147qqpcad8vqcy4rxmfbv2cb8ww3sffpa9yx0n1";
     name   = "mariadb-${version}.tar.gz";
   };
 
diff --git a/pkgs/servers/xmpp/ejabberd/default.nix b/pkgs/servers/xmpp/ejabberd/default.nix
index 6a0bedeab260..1436af024cd7 100644
--- a/pkgs/servers/xmpp/ejabberd/default.nix
+++ b/pkgs/servers/xmpp/ejabberd/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, writeScriptBin, lib, fetchurl, git, cacert
+{ stdenv, writeScriptBin, makeWrapper, lib, fetchurl, git, cacert, libpng, libjpeg, libwebp
 , erlang, openssl, expat, libyaml, bash, gnused, gnugrep, coreutils, utillinux, procps, gd
 , flock
 , withMysql ? false
@@ -24,17 +24,17 @@ let
   ctlpath = lib.makeBinPath [ bash gnused gnugrep coreutils utillinux procps ];
 
 in stdenv.mkDerivation rec {
-  version = "18.01";
+  version = "18.06";
   name = "ejabberd-${version}";
 
   src = fetchurl {
     url = "https://www.process-one.net/downloads/ejabberd/${version}/${name}.tgz";
-    sha256 = "01i2n8mlgw293jdf4172f9q8ca8m35vysjws791p7nynpfdb4cn6";
+    sha256 = "1c4h6qrckihm8v4vm52h31j5dxg7247vk374rwz41idfb25vx7dc";
   };
 
   nativeBuildInputs = [ fakegit ];
 
-  buildInputs = [ erlang openssl expat libyaml gd ]
+  buildInputs = [ erlang openssl expat libyaml gd makeWrapper ]
     ++ lib.optional withSqlite sqlite
     ++ lib.optional withPam pam
     ++ lib.optional withZlib zlib
@@ -75,7 +75,7 @@ in stdenv.mkDerivation rec {
 
     outputHashMode = "recursive";
     outputHashAlgo = "sha256";
-    outputHash = "1v3h0c7kfifb6wsfxyv5j1wc7rlxbb7r0pgd4s340wiyxnllzzhk";
+    outputHash = "1bk3yd10cq6vlgmh2qawl82m29yi5zcbsdlz17xyy76sg2ka622a";
   };
 
   configureFlags =
@@ -106,6 +106,7 @@ in stdenv.mkDerivation rec {
       -e 's,\(^ *JOT=\).*,\1,' \
       -e 's,\(^ *CONNLOCKDIR=\).*,\1/var/lock/ejabberdctl,' \
       $out/sbin/ejabberdctl
+    wrapProgram $out/lib/eimp-*/priv/bin/eimp --prefix LD_LIBRARY_PATH : "${stdenv.lib.makeLibraryPath [ libpng libjpeg libwebp ]}"
   '';
 
   meta = with stdenv.lib; {
diff --git a/pkgs/shells/zsh/antibody/default.nix b/pkgs/shells/zsh/antibody/default.nix
index 98ca9ce8f999..60304531bfbe 100644
--- a/pkgs/shells/zsh/antibody/default.nix
+++ b/pkgs/shells/zsh/antibody/default.nix
@@ -2,16 +2,16 @@
 
 buildGoPackage rec {
   name = "antibody-${version}";
-  version = "3.5.1";
+  version = "3.6.1";
   rev = "v${version}";
-  
+
   goPackagePath = "github.com/getantibody/antibody";
 
   src = fetchFromGitHub {
     inherit rev;
     owner  = "getantibody";
     repo   = "antibody";
-    sha256 = "0bqq59vnnm80jiqlhn7wfyzj96nkv8k9zp8i4sgcj8gvk1zq2lbc";
+    sha256 = "1xlaf3440hs1ffa23ja0fc185sj0rxjv0808ib8li3rq2qfkd0k8";
   };
 
   goDeps = ./deps.nix;
diff --git a/pkgs/tools/admin/simp_le/default.nix b/pkgs/tools/admin/simp_le/default.nix
index ca0e16c1185a..f5be7719d0d2 100644
--- a/pkgs/tools/admin/simp_le/default.nix
+++ b/pkgs/tools/admin/simp_le/default.nix
@@ -1,17 +1,19 @@
-{ stdenv, pythonPackages, bash }:
- 
-pythonPackages.buildPythonApplication rec {
+{ stdenv, python3Packages, bash }:
+
+python3Packages.buildPythonApplication rec {
   pname = "simp_le-client";
-  version = "0.8.0";
+  version = "0.9.0";
 
-  src = pythonPackages.fetchPypi {
+  src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "0nv9mm99rm8i9flgfgwvmajbsxb5rm162nfxlq3wk66bbbyr6y1i";
+    sha256 = "1yxfznd78zkg2f657v520zj5w4dvq5n594d0kpm4lra8xnpg4zcv";
   };
 
   postPatch = ''
     # drop upper bound of acme requirement
     sed -ri "s/'(acme>=[^,]+),<[^']+'/'\1'/" setup.py
+    # drop upper bound of idna requirement
+    sed -ri "s/'(idna)<[^']+'/'\1'/" setup.py
     substituteInPlace simp_le.py \
       --replace "/bin/sh" "${bash}/bin/sh"
   '';
@@ -20,14 +22,13 @@ pythonPackages.buildPythonApplication rec {
     $out/bin/simp_le --test
   '';
 
-  propagatedBuildInputs = with pythonPackages; [ acme setuptools_scm josepy ];
+  propagatedBuildInputs = with python3Packages; [ acme setuptools_scm josepy idna ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/zenhack/simp_le;
     description = "Simple Let's Encrypt client";
     license = licenses.gpl3;
     maintainers = with maintainers; [ gebner makefu ];
-    platforms = platforms.all;
+    platforms = platforms.linux;
   };
 }
-
diff --git a/pkgs/tools/archivers/sharutils/default.nix b/pkgs/tools/archivers/sharutils/default.nix
index 907ac58d15fe..292c0be20e57 100644
--- a/pkgs/tools/archivers/sharutils/default.nix
+++ b/pkgs/tools/archivers/sharutils/default.nix
@@ -19,7 +19,15 @@ stdenv.mkDerivation rec {
   # remaps /etc/passwd to a trivial file, but we can't do that on Darwin so I do this
   # instead. In this case, I pass in the very imaginative "submitter" as the submitter name
 
-  patchPhase = let
+  patches = [
+    # CVE-2018-1000097
+    (fetchurl {
+      url = "https://sources.debian.org/data/main/s/sharutils/1:4.15.2-2+deb9u1/debian/patches/01-fix-heap-buffer-overflow-cve-2018-1000097.patch";
+      sha256 = "19g0sxc8g79aj5gd5idz5409311253jf2q8wqkasf0handdvsbxx";
+    })
+  ];
+
+  postPatch = let
       # This evaluates to a string containing:
       #
       #     substituteInPlace tests/shar-2 --replace '${SHAR}' '${SHAR} -s submitter'
diff --git a/pkgs/tools/backup/ddar/default.nix b/pkgs/tools/backup/ddar/default.nix
index ce65ef4eb80b..3855152880e2 100644
--- a/pkgs/tools/backup/ddar/default.nix
+++ b/pkgs/tools/backup/ddar/default.nix
@@ -1,6 +1,6 @@
-{ lib, buildPythonApplication, fetchFromGitHub, protobuf, roundup }:
+{ lib, python2, fetchFromGitHub, roundup }:
 
-buildPythonApplication rec {
+python2.pkgs.buildPythonApplication rec {
   pname = "ddar";
   version = "1.0";
 
@@ -23,7 +23,7 @@ buildPythonApplication rec {
     make -f Makefile.prep synctus/ddar_pb2.py
   '';
 
-  propagatedBuildInputs = [ protobuf ];
+  propagatedBuildInputs = with python2.pkgs; [ protobuf ];
 
   checkInputs = [ roundup ];
 
diff --git a/pkgs/tools/backup/duply/default.nix b/pkgs/tools/backup/duply/default.nix
index e8d3a2e185ee..cc4785740a4e 100644
--- a/pkgs/tools/backup/duply/default.nix
+++ b/pkgs/tools/backup/duply/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, coreutils, python, duplicity, gawk, gnupg1, bash
+{ stdenv, fetchurl, coreutils, python2, duplicity, gawk, gnupg1, bash
 , gnugrep, txt2man, makeWrapper, which
 }:
 
@@ -19,7 +19,7 @@ stdenv.mkDerivation {
     mkdir -p "$out/share/man/man1"
     install -vD duply "$out/bin"
     wrapProgram "$out/bin/duply" --set PATH \
-        ${stdenv.lib.makeBinPath [ coreutils python duplicity gawk gnupg1 bash gnugrep txt2man which ]}
+        ${stdenv.lib.makeBinPath [ coreutils python2 duplicity gawk gnupg1 bash gnugrep txt2man which ]}
     "$out/bin/duply" txt2man > "$out/share/man/man1/duply.1"
   '';
 
diff --git a/pkgs/tools/bluetooth/blueman/default.nix b/pkgs/tools/bluetooth/blueman/default.nix
index da562fde1603..29c9a21465c7 100644
--- a/pkgs/tools/bluetooth/blueman/default.nix
+++ b/pkgs/tools/bluetooth/blueman/default.nix
@@ -1,9 +1,10 @@
-{ stdenv, lib, fetchurl, intltool, pkgconfig, pythonPackages, bluez, gtk3
+{ stdenv, lib, fetchurl, intltool, pkgconfig, python3Packages, bluez, gtk3
 , obex_data_server, xdg_utils, libnotify, dnsmasq, dhcp
 , hicolor-icon-theme, librsvg, wrapGAppsHook, gobjectIntrospection
 , withPulseAudio ? true, libpulseaudio }:
 
 let
+  pythonPackages = python3Packages;
   binPath = lib.makeBinPath [ xdg_utils dnsmasq dhcp ];
 
 in stdenv.mkDerivation rec {
diff --git a/pkgs/tools/filesystems/f2fs-tools/default.nix b/pkgs/tools/filesystems/f2fs-tools/default.nix
index 321259292ef4..20e1853a3af6 100644
--- a/pkgs/tools/filesystems/f2fs-tools/default.nix
+++ b/pkgs/tools/filesystems/f2fs-tools/default.nix
@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation rec {
   name = "f2fs-tools-${version}";
-  version = "1.10.0";
+  version = "1.11.0";
 
   src = fetchgit {
     url = "git://git.kernel.org/pub/scm/linux/kernel/git/jaegeuk/f2fs-tools.git";
     rev = "refs/tags/v${version}";
-    sha256 = "1254pd254l1hxkzkkzqmzc0j9vywj2wddg9apqaixjninj21jrbc";
+    sha256 = "188yv77ga466wpzbirsx6vspym8idaschgi7cx92z4jwqpnkk5gv";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
diff --git a/pkgs/tools/filesystems/squashfuse/default.nix b/pkgs/tools/filesystems/squashfuse/default.nix
index b3d8d70f0e29..d7d917d5e9fb 100644
--- a/pkgs/tools/filesystems/squashfuse/default.nix
+++ b/pkgs/tools/filesystems/squashfuse/default.nix
@@ -6,7 +6,7 @@ with stdenv.lib;
 stdenv.mkDerivation rec {
 
   pname = "squashfuse";
-  version = "unstable-2018-02-20";
+  version = "0.1.103";
   name = "${pname}-${version}";
 
   meta = {
@@ -24,7 +24,7 @@ stdenv.mkDerivation rec {
   src = fetchFromGitHub {
     owner = "vasi";
     repo  = "${pname}";
-    rev = "3f4a93f373796e88f7eee3a0c005ef60cb395d30";
+    rev = "540204955134eee44201d50132a5f66a246bcfaf";
     sha256 = "07jv4qjjz9ky3mw3p5prgs19g1bna9dcd7jjdz8083s1wyipdgcq";
   };
 
diff --git a/pkgs/tools/graphics/oxipng/default.nix b/pkgs/tools/graphics/oxipng/default.nix
index 21d86f4c44b6..4c565e91a4de 100644
--- a/pkgs/tools/graphics/oxipng/default.nix
+++ b/pkgs/tools/graphics/oxipng/default.nix
@@ -1,22 +1,26 @@
 { stdenv, fetchFromGitHub, rustPlatform }:
 
 rustPlatform.buildRustPackage rec {
-  version = "1.0.1";
+  version = "2.1.0";
   name = "oxipng-${version}";
 
   src = fetchFromGitHub {
     owner = "shssoichiro";
     repo = "oxipng";
     rev = "v${version}";
-    sha256 = "0w39f0dhq9cxk25vy0wh8vicxyckvj1vmglx5va4550i3q0hsrws";
+    sha256 = "13rzkfb025y4i9dj66fgc74whgs90gyw861dccsj16cpfl6kh5z0";
   };
 
-  cargoSha256 = "00nbx6n73yl4ax05pqkmim1vhy0pymgz5la1cc4y18gjbjjj9w4h";
+  cargoSha256 = "0l6ad8rnifd5hkv6x2cr0frdddsfwm1xd1v56imlglsjkgz56cva";
 
   meta = with stdenv.lib; {
     homepage = https://github.com/shssoichiro/oxipng;
     description = "A lossless PNG compression optimizer";
     license = licenses.mit;
+    maintainers = with maintainers; [ dywedir ];
     platforms = platforms.all;
+
+    # macro is_arm_feature_detected! is unstable
+    broken = stdenv.isAarch64;
   };
 }
diff --git a/pkgs/tools/graphics/scour/default.nix b/pkgs/tools/graphics/scour/default.nix
new file mode 100644
index 000000000000..11932aabe0bb
--- /dev/null
+++ b/pkgs/tools/graphics/scour/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, python3 }:
+
+with python3.pkgs;
+
+buildPythonApplication rec {
+  pname = "scour";
+  version = "0.37";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "05k1f8i8v7sp5v39lian865vwvapq05a6vmvk7fwnxv8kivi6ccn";
+  };
+
+  propagatedBuildInputs = [ six ];
+
+  meta = with stdenv.lib; {
+    description = "An SVG Optimizer / Cleaner ";
+    homepage    = https://github.com/scour-project/scour;
+    license     = licenses.asl20;
+    maintainers = with maintainers; [ worldofpeace ];
+    platforms   = platforms.unix;
+  };
+}
diff --git a/pkgs/tools/misc/svtplay-dl/default.nix b/pkgs/tools/misc/svtplay-dl/default.nix
index 9ba61221684a..e29e799898c3 100644
--- a/pkgs/tools/misc/svtplay-dl/default.nix
+++ b/pkgs/tools/misc/svtplay-dl/default.nix
@@ -1,8 +1,8 @@
-{ stdenv, fetchFromGitHub, makeWrapper, pythonPackages, perl, zip
+{ stdenv, fetchFromGitHub, makeWrapper, python3Packages, perl, zip
 , rtmpdump }:
 
 let
-  inherit (pythonPackages) python nose pycrypto requests mock;
+  inherit (python3Packages) python nose pycrypto requests mock;
 in stdenv.mkDerivation rec {
   name = "svtplay-dl-${version}";
   version = "1.9.11";
diff --git a/pkgs/tools/networking/haproxy/default.nix b/pkgs/tools/networking/haproxy/default.nix
index 1690d3fcc3e3..8f72976d7dce 100644
--- a/pkgs/tools/networking/haproxy/default.nix
+++ b/pkgs/tools/networking/haproxy/default.nix
@@ -1,6 +1,6 @@
 { useLua ? !stdenv.isDarwin
 , usePcre ? true
-, stdenv, fetchurl, fetchpatch
+, stdenv, fetchurl
 , openssl, zlib, lua5_3 ? null, pcre ? null
 }:
 
@@ -9,26 +9,14 @@ assert usePcre -> pcre != null;
 
 stdenv.mkDerivation rec {
   pname = "haproxy";
-  version = "1.8.9";
+  version = "1.8.13";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "https://www.haproxy.org/download/${stdenv.lib.versions.majorMinor version}/src/${name}.tar.gz";
-    sha256 = "00miblgwll3mycsgmp3gd3cn4lwsagxzgjxk5i6csnyqgj97fss3";
+    sha256 = "2bf5dafbb5f1530c0e67ab63666565de948591f8e0ee2a1d3c84c45e738220f1";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "CVE-2018-11469.patch";
-      url = "https://git.haproxy.org/?p=haproxy-1.8.git;a=patch;h=17514045e5d934dede62116216c1b016fe23dd06";
-      sha256 = "0hzcvghg8qz45n3mrcgsjgvrvicvbvm52cc4hs5jbk1yb50qvls7";
-    })
-  ] ++ stdenv.lib.optional stdenv.isDarwin (fetchpatch {
-    name = "fix-darwin-no-threads-build.patch";
-    url = "https://git.haproxy.org/?p=haproxy-1.8.git;a=patch;h=fbf09c441a4e72c4a690bc7ef25d3374767fe5c5;hp=3157ef219c493f3b01192f1b809a086a5b119a1e";
-    sha256 = "16ckzb160anf7xih7mmqy59pfz8sdywmyblxnr7lz9xix3jwk55r";
-  });
-
   buildInputs = [ openssl zlib ]
     ++ stdenv.lib.optional useLua lua5_3
     ++ stdenv.lib.optional usePcre pcre;
@@ -51,7 +39,8 @@ stdenv.mkDerivation rec {
     "USE_LUA=yes"
     "LUA_LIB=${lua5_3}/lib"
     "LUA_INC=${lua5_3}/include"
-  ] ++ stdenv.lib.optional stdenv.isDarwin "CC=cc";
+  ] ++ stdenv.lib.optional stdenv.isDarwin "CC=cc"
+    ++ stdenv.lib.optional stdenv.isLinux "USE_GETADDRINFO=1";
 
   meta = {
     description = "Reliable, high performance TCP/HTTP load balancer";
diff --git a/pkgs/tools/networking/p2p/libtorrent/default.nix b/pkgs/tools/networking/p2p/libtorrent/default.nix
index 87cf6d172c0c..9c6f5eec11b7 100644
--- a/pkgs/tools/networking/p2p/libtorrent/default.nix
+++ b/pkgs/tools/networking/p2p/libtorrent/default.nix
@@ -6,13 +6,13 @@
 
 stdenv.mkDerivation rec {
   name = "libtorrent-${version}";
-  version = "20161212";
+  version = "0.13.7";
 
   src = fetchFromGitHub {
     owner = "rakshasa";
     repo = "libtorrent";
-    rev = "c167c5a9e0bcf0df23ae5efd91396aae0e37eb87";
-    sha256 = "0y9759sxx5dyamyw8w58dsxq7bmnn57q7s2f4cw2zln2pp5gripw";
+    rev = "v${version}";
+    sha256 = "027qanwcisxhx0bq8dn8cpg8563q0k2pm8ls278f04n7jqvvwkp0";
   };
 
   nativeBuildInputs = [ pkgconfig ];
@@ -21,7 +21,7 @@ stdenv.mkDerivation rec {
   preConfigure = "./autogen.sh";
 
   meta = with stdenv.lib; {
-    homepage = "http://rtorrent.net/downloads/";
+    inherit (src.meta) homepage;
     description = "A BitTorrent library written in C++ for *nix, with focus on high performance and good code";
 
     platforms = platforms.unix;
diff --git a/pkgs/tools/networking/p2p/rtorrent/default.nix b/pkgs/tools/networking/p2p/rtorrent/default.nix
index 6ab462ac5a8c..658739c93aa0 100644
--- a/pkgs/tools/networking/p2p/rtorrent/default.nix
+++ b/pkgs/tools/networking/p2p/rtorrent/default.nix
@@ -9,13 +9,13 @@
 
 stdenv.mkDerivation rec {
   name = "rtorrent-${version}";
-  version = "20161023";
+  version = "0.9.7";
 
   src = fetchFromGitHub {
     owner = "rakshasa";
     repo = "rtorrent";
-    rev = "226e670decf92e7adaa845a6982aca4f164ea740";
-    sha256 = "0cxyakc09bn6wjfj42gh508hc62awx825skzacpizx2bqs6v7xvb";
+    rev = "v${version}";
+    sha256 = "0a9dk3cz56f7gad8ghsma79iy900rwdvzngs6k6x08nlwaqid8ga";
   };
 
   nativeBuildInputs = [ pkgconfig ];
@@ -42,7 +42,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    inherit (src.meta) homepage;
+    homepage = https://rakshasa.github.io/rtorrent/;
     description = "An ncurses client for libtorrent, ideal for use with screen, tmux, or dtach";
 
     platforms = platforms.unix;
diff --git a/pkgs/tools/security/ccid/default.nix b/pkgs/tools/security/ccid/default.nix
index 903794622fb0..0f515c518040 100644
--- a/pkgs/tools/security/ccid/default.nix
+++ b/pkgs/tools/security/ccid/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, pcsclite, pkgconfig, libusb1, perl }:
 
 stdenv.mkDerivation rec {
-  version = "1.4.27";
+  version = "1.4.29";
   name = "ccid-${version}";
 
   src = fetchurl {
-    url = "https://alioth.debian.org/frs/download.php/file/4218/ccid-1.4.27.tar.bz2";
-    sha256 = "0dyikpmhsph36ndgd61bs4yx437v5y0bmm8ahjacp1k9c1ly4q56";
+    url = "https://ccid.apdu.fr/files/${name}.tar.bz2";
+    sha256 = "0kdqmbma6sclsrbxy9w85h7cs0v11if4nc2r9v09613k8pl2lhx5";
   };
 
   postPatch = ''
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "ccid drivers for pcsclite";
-    homepage = http://pcsclite.alioth.debian.org/;
+    homepage = https://ccid.apdu.fr/;
     license = licenses.gpl2Plus;
     maintainers = with maintainers; [ wkennington ];
     platforms = platforms.linux;
diff --git a/pkgs/tools/system/logrotate/default.nix b/pkgs/tools/system/logrotate/default.nix
index 75e25bcc6730..75f609684406 100644
--- a/pkgs/tools/system/logrotate/default.nix
+++ b/pkgs/tools/system/logrotate/default.nix
@@ -1,4 +1,6 @@
-{ stdenv, fetchFromGitHub, mailutils, gzip, popt, autoreconfHook }:
+{ stdenv, fetchFromGitHub, gzip, popt, autoreconfHook
+, mailutils ? null
+}:
 
 stdenv.mkDerivation rec {
   name = "logrotate-${version}";
@@ -14,8 +16,11 @@ stdenv.mkDerivation rec {
   # Logrotate wants to access the 'mail' program; to be done.
   patchPhase = ''
     sed -i -e 's,[a-z/]\+gzip,${gzip}/bin/gzip,' \
-           -e 's,[a-z/]\+gunzip,${gzip}/bin/gunzip,' \
-           -e 's,[a-z/]\+mail,${mailutils}/bin/mail,' configure.ac
+           -e 's,[a-z/]\+gunzip,${gzip}/bin/gunzip,' configure.ac
+
+    ${stdenv.lib.optionalString (mailutils != null) ''
+    sed -i -e 's,[a-z/]\+mail,${mailutils}/bin/mail,' configure.ac
+    ''}
   '';
 
   autoreconfPhase = ''
diff --git a/pkgs/tools/system/netdata/default.nix b/pkgs/tools/system/netdata/default.nix
index 7bb98e8e80c4..6f86647f4c70 100644
--- a/pkgs/tools/system/netdata/default.nix
+++ b/pkgs/tools/system/netdata/default.nix
@@ -1,22 +1,19 @@
 { stdenv, fetchFromGitHub, autoreconfHook, zlib, pkgconfig, libuuid }:
 
 stdenv.mkDerivation rec{
-  version = "1.9.0";
+  version = "1.10.0";
   name = "netdata-${version}";
 
   src = fetchFromGitHub {
     rev = "v${version}";
     owner = "firehol";
     repo = "netdata";
-    sha256 = "1vy0jz5lxw63b830l9jgf1qqhp41gzapyhdr5k1gwg3zghvlg10w";
+    sha256 = "02spfisabjkkgd9fairldlf84n83vbv2xafg0g5jrpfa972pjl9r";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
   buildInputs = [ zlib libuuid ];
 
-  # Allow UI to load when running as non-root
-  patches = [ ./web_access.patch ];
-
   # Build will fail trying to create /var/{cache,lib,log}/netdata without this
   postPatch = ''
    sed -i '/dist_.*_DATA = \.keep/d' src/Makefile.am
diff --git a/pkgs/tools/system/netdata/web_access.patch b/pkgs/tools/system/netdata/web_access.patch
deleted file mode 100644
index ae4d29185de4..000000000000
--- a/pkgs/tools/system/netdata/web_access.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- a/src/web_client.c.orig
-+++ b/src/web_client.c
-@@ -302,7 +302,7 @@
-         buffer_strcat_htmlescape(w->response.data, webfilename);
-         return 404;
-     }
--
-+#if 0
-     // check if the file is owned by expected user
-     if(stat.st_uid != web_files_uid()) {
-         error("%llu: File '%s' is owned by user %u (expected user %u). Access Denied.", w->id, webfilename, stat.st_uid, web_files_uid());
-@@ -320,7 +320,7 @@
-         buffer_strcat_htmlescape(w->response.data, webfilename);
-         return 403;
-     }
--
-+#endif
-     if((stat.st_mode & S_IFMT) == S_IFDIR) {
-         snprintfz(webfilename, FILENAME_MAX, "%s/index.html", filename);
-         return mysendfile(w, webfilename);
diff --git a/pkgs/tools/text/ripgrep/default.nix b/pkgs/tools/text/ripgrep/default.nix
index aa41e7b7f60a..f70f0f3d75b2 100644
--- a/pkgs/tools/text/ripgrep/default.nix
+++ b/pkgs/tools/text/ripgrep/default.nix
@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   name = "ripgrep-${version}";
-  version = "0.8.1";
+  version = "0.9.0";
 
   src = fetchFromGitHub {
     owner = "BurntSushi";
     repo = "ripgrep";
-    rev = "${version}";
-    sha256 = "1h7k9ik723qzplwl0a5i0anzdr115wwklfgp0n11p4k2ckh7nygn";
+    rev = version;
+    sha256 = "089xffrqi4wm0w1lhy5iqxrcb82ca44bxl8qps4ilv0ih91vxwfj";
   };
 
-  cargoSha256 = "1gld93dxfm4vyiz1b43smbdhxmyzdk2236ksp8vw1zb1yyzn83nf";
+  cargoSha256 = "1wsw7s1bc1gnpq4kjzkas5zf2snhpx9f6cyrrf6g5jr8l0hcbyih";
 
   nativeBuildInputs = [ asciidoc docbook_xsl libxslt ];
 
diff --git a/pkgs/tools/typesetting/biber/default.nix b/pkgs/tools/typesetting/biber/default.nix
index c9280c102b70..d19838f9ff06 100644
--- a/pkgs/tools/typesetting/biber/default.nix
+++ b/pkgs/tools/typesetting/biber/default.nix
@@ -1,16 +1,9 @@
-{ stdenv, fetchFromGitHub, buildPerlModule, autovivification, BusinessISBN
-, BusinessISMN, BusinessISSN, ConfigAutoConf, DataCompare, DataDump, DateSimple
-, DateTime, DateTimeFormatBuilder, DateTimeCalendarJulian
-, EncodeEUCJPASCII, EncodeHanExtra, EncodeJIS2K, ExtUtilsLibBuilder
-, FileSlurp, FileWhich, IPCRun3, LogLog4perl, LWPProtocolHttps, ListAllUtils, ListMoreUtils
-, MozillaCA, ReadonlyXS, RegexpCommon, TextBibTeX, UnicodeCollate
-, UnicodeLineBreak, URI, XMLLibXMLSimple, XMLLibXSLT, XMLWriter, ClassAccessor
-, TextCSV, TextCSV_XS, TextRoman, DataUniqid, LinguaTranslit, UnicodeNormalize, SortKey
-, TestDifferences }:
+{ stdenv, fetchFromGitHub, perlPackages }:
 
-buildPerlModule rec {
+perlPackages.buildPerlModule rec {
   name = "biber-${version}";
   version = "2.7";
+
   src = fetchFromGitHub {
     owner = "plk";
     repo = "biber";
@@ -18,7 +11,7 @@ buildPerlModule rec {
     sha256 = "04jmsh59g2s0b61rm25z0hwb6yliqyh5gjs4y74va93d2b9mrd17";
   };
 
-  buildInputs = [
+  buildInputs = with perlPackages; [
     autovivification BusinessISBN BusinessISMN BusinessISSN ConfigAutoConf
     DataCompare DataDump DateSimple EncodeEUCJPASCII EncodeHanExtra EncodeJIS2K
     DateTime DateTimeFormatBuilder DateTimeCalendarJulian
@@ -32,10 +25,10 @@ buildPerlModule rec {
   # Tests depend on the precise Unicode-Collate version (expects 1.19, but we have 1.25)
   doCheck = false;
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Backend for BibLaTeX";
-    license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ];
-    platforms = stdenv.lib.platforms.unix;
-    maintainers = [ stdenv.lib.maintainers.ttuegel ];
+    license = with licenses; [ artistic1 gpl1Plus ];
+    platforms = platforms.unix;
+    maintainers = [ maintainers.ttuegel ];
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e7923c9f06ce..9236a92537af 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1147,7 +1147,7 @@ with pkgs;
 
   dateutils = callPackage ../tools/misc/dateutils { };
 
-  ddar = pythonPackages.callPackage ../tools/backup/ddar { };
+  ddar = callPackage ../tools/backup/ddar { };
 
   ddate = callPackage ../tools/misc/ddate { };
 
@@ -1456,6 +1456,8 @@ with pkgs;
 
   parallel-rust = callPackage ../tools/misc/parallel-rust { };
 
+  scour = callPackage ../tools/graphics/scour { };
+
   s2png = callPackage ../tools/graphics/s2png { };
 
   simg2img = callPackage ../tools/filesystems/simg2img { };
@@ -1605,17 +1607,7 @@ with pkgs;
 
   bgs = callPackage ../tools/X11/bgs { };
 
-  biber = callPackage ../tools/typesetting/biber {
-    inherit (perlPackages) buildPerlModule
-      autovivification BusinessISBN BusinessISMN BusinessISSN ConfigAutoConf
-      DataCompare DataDump DateSimple EncodeEUCJPASCII EncodeHanExtra EncodeJIS2K
-      DateTime DateTimeFormatBuilder DateTimeCalendarJulian
-      ExtUtilsLibBuilder FileSlurp FileWhich IPCRun3 LogLog4perl LWPProtocolHttps ListAllUtils
-      ListMoreUtils MozillaCA ReadonlyXS RegexpCommon TextBibTeX
-      UnicodeCollate UnicodeLineBreak URI XMLLibXMLSimple XMLLibXSLT XMLWriter
-      ClassAccessor TextCSV TextCSV_XS TextRoman DataUniqid LinguaTranslit UnicodeNormalize SortKey
-      TestDifferences;
-  };
+  biber = callPackage ../tools/typesetting/biber { };
 
   blueman = callPackage ../tools/bluetooth/blueman {
     withPulseAudio = config.pulseaudio or true;
@@ -4682,6 +4674,8 @@ with pkgs;
 
   proot = callPackage ../tools/system/proot { };
 
+  prototypejs = callPackage ../development/libraries/prototypejs { };
+
   proxychains = callPackage ../tools/networking/proxychains { };
 
   proxytunnel = callPackage ../tools/misc/proxytunnel { };
@@ -10105,6 +10099,10 @@ with pkgs;
 
   libdbiDrivers = callPackage ../development/libraries/libdbi-drivers { };
 
+  libunity = callPackage ../development/libraries/libunity {
+    inherit (gnome3) gnome-common;
+  };
+
   libdbusmenu = callPackage ../development/libraries/libdbusmenu { };
   libdbusmenu-gtk2 = libdbusmenu.override { gtkVersion = "2"; };
   libdbusmenu-gtk3 = libdbusmenu.override { gtkVersion = "3"; };
@@ -15268,6 +15266,8 @@ with pkgs;
 
   avocode = callPackage ../applications/graphics/avocode {};
 
+  cadence =  libsForQt5.callPackage ../applications/audio/cadence { };
+
   milkytracker = callPackage ../applications/audio/milkytracker { };
 
   schismtracker = callPackage ../applications/audio/schismtracker { };
@@ -17884,6 +17884,8 @@ with pkgs;
     gtksharp = gtk-sharp-2_0;
   };
 
+  plex-media-player = libsForQt59.callPackage ../applications/video/plex-media-player { };
+
   plover = recurseIntoAttrs (callPackage ../applications/misc/plover { });
 
   plugin-torture = callPackage ../applications/audio/plugin-torture { };
@@ -18404,7 +18406,7 @@ with pkgs;
     inherit (pkgs.vamp) vampSDK;
   };
 
-  soulseekqt = callPackage ../applications/networking/p2p/soulseekqt { };
+  soulseekqt = libsForQt5.callPackage ../applications/networking/p2p/soulseekqt { };
 
   sox = callPackage ../applications/misc/audio/sox {
     enableLame = config.sox.enableLame or false;
@@ -18774,6 +18776,7 @@ with pkgs;
     inherit (darwin.apple_sdk.frameworks) CoreServices Cocoa Foundation CoreData;
     inherit (darwin) libobjc cf-private;
     inherit lua;
+    guiSupport = "gtk3";
   });
 
   vimNox = lowPrio (vim_configurable.override {
@@ -20497,6 +20500,9 @@ with pkgs;
 
   jags = callPackage ../applications/science/math/jags { };
 
+  libbraiding = callPackage ../development/libraries/science/math/libbraiding { };
+
+  libhomfly = callPackage ../development/libraries/science/math/libhomfly { };
 
   # We have essentially 4 permutations of liblapack: version 3.4.1 or 3.5.0,
   # and with or without atlas as a dependency. The default `liblapack` is 3.4.1
diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index cb292af94641..46db9826e78e 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -206,6 +206,26 @@ let self = _self // overrides; _self = with self; {
     propagatedBuildInputs = [ Moose Mouse ];
   };
 
+  ApacheAuthCookie = buildPerlPackage rec {
+    name = "Apache-AuthCookie-3.27";
+    src = fetchurl {
+      url = "mirror://cpan/authors/id/M/MS/MSCHOUT/${name}.tar.gz";
+      sha256 = "58daeb3e44c681ff88f8fb00e4aabaa7a40cbee73dbdb84fcf6c285b15d357bd";
+    };
+    buildInputs = [ ApacheTest URI ];
+    propagatedBuildInputs = [ ClassLoad HTTPBody HashMultiValue WWWFormUrlEncoded ];
+
+    # Fails because /etc/protocols is not available in sandbox and make
+    # getprotobyname('tcp') in ApacheTest fail.
+    doCheck = !stdenv.isLinux;
+
+    meta = {
+      homepage = http://search.cpan.org/dist/Apache-AuthCookie/;
+      description = "Perl Authentication and Authorization via cookies";
+      license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ];
+    };
+  };
+
   ApacheLogFormatCompiler = buildPerlModule rec {
     name = "Apache-LogFormat-Compiler-0.35";
     src = fetchurl {
diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix
index 0057353c3e0b..8592e3136aee 100644
--- a/pkgs/top-level/php-packages.nix
+++ b/pkgs/top-level/php-packages.nix
@@ -160,6 +160,13 @@ let
     buildInputs = with pkgs; [ cyrus_sasl zlib ];
   };
 
+  oci8 = buildPecl rec {
+    name = "oci8-2.1.8";
+    sha256 = "1bp6fss2f2qmd5bdk7x22j8vx5qivrdhz4x7csf29vjgj6gvchxy";
+    buildInputs = [ pkgs.re2c pkgs.oracle-instantclient ];
+    configureFlags = [ "--with-oci8=shared,instantclient,${pkgs.oracle-instantclient}/lib" ];
+  };
+
   pcs = buildPecl rec {
     name = "pcs-1.3.3";
 
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 2cc655542848..4913e533f29b 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -925,26 +925,8 @@ in {
 
   babelfish = callPackage ../development/python-modules/babelfish {};
 
-  basiciw = buildPythonPackage rec {
-    name = "${pname}-${version}";
-    version = "0.2.2";
-    pname = "basiciw";
-    disabled = isPy27 || isPyPy;
-
-    src = pkgs.fetchurl {
-      url = "mirror://pypi/b/${pname}/${name}.tar.gz";
-      sha256 = "1ajmflvvlkflrcmqmkrx0zaira84z8kv4ssb2jprfwvjh8vfkysb";
-    };
-
-    buildInputs = [ pkgs.gcc ];
-    propagatedBuildInputs = [ pkgs.wirelesstools ];
-
-    meta = {
-      description = "Get info about wireless interfaces using libiw";
-      homepage = https://github.com/enkore/basiciw;
-      platforms = platforms.linux;
-      license = licenses.gpl2;
-    };
+  basiciw = callPackage ../development/python-modules/basiciw {
+    inherit (pkgs) gcc wirelesstools;
   };
 
   batinfo = callPackage ../development/python-modules/batinfo {};
@@ -955,37 +937,7 @@ in {
 
   beautifulsoup4 = callPackage ../development/python-modules/beautifulsoup4 { };
 
-  beaker = buildPythonPackage rec {
-    name = "Beaker-${version}";
-    version = "1.8.0";
-
-    # The pypy release do not contains the tests
-    src = pkgs.fetchFromGitHub {
-      owner = "bbangert";
-      repo = "beaker";
-      rev = "${version}";
-      sha256 = "17yfr7a307n8rdl09was4j60xqk2s0hk0hywdkigrpj4qnw0is7g";
-    };
-
-    buildInputs =
-      [ self.nose
-        self.mock
-        self.webtest
-      ];
-    propagatedBuildInputs = [
-      self.sqlalchemy
-      self.pycrypto
-    ] ++ optionals (isPy27) [
-      self.funcsigs
-      self.pycryptopp
-    ];
-
-    meta = {
-      description = "A Session and Caching library with WSGI Middleware";
-      maintainers = with maintainers; [ garbas domenkozar ];
-      platforms = platforms.all;
-    };
-  };
+  beaker = callPackage ../development/python-modules/beaker { };
 
   betamax = callPackage ../development/python-modules/betamax {};
 
@@ -17602,6 +17554,18 @@ EOF
   })).python;
 
   rfc7464 = callPackage ../development/python-modules/rfc7464 { };
+
+  foundationdb51 = (toPythonModule (pkgs.fdbPackages.override {
+    inherit python;
+  }).foundationdb51).python;
+
+  foundationdb52 = (toPythonModule (pkgs.fdbPackages.override {
+    inherit python;
+  }).foundationdb52).python;
+
+  foundationdb60 = (toPythonModule (pkgs.fdbPackages.override {
+    inherit python;
+  }).foundationdb60).python;
 });
 
 in fix' (extends overrides packages)